BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781193|ref|YP_003065606.1| putative DNA polymerase from
bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62]
         (675 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 675/675 (100%), Positives = 675/675 (100%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA
Sbjct: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS
Sbjct: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS
Sbjct: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
           KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK
Sbjct: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS
Sbjct: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII
Sbjct: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
           SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA
Sbjct: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN
Sbjct: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA
Sbjct: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
           RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN
Sbjct: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
           IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG
Sbjct: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660

Query: 661 LPLKAEGYESKRYRK 675
           LPLKAEGYESKRYRK
Sbjct: 661 LPLKAEGYESKRYRK 675


>gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 645

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 216/697 (30%), Positives = 315/697 (45%), Gaps = 75/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M ++ ID ET S + L K G+ KYAE  D  ++LF +  D   V++ D  +   +P+ + 
Sbjct: 1   MKSISIDVETFSSVPLAKAGVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIPKEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  VT  A N+ FER  L     + +  + W C+++ A + GLP +LK VG  L L
Sbjct: 61  AALTDETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLKDVGAVLWL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174
             QK+EEGK+LI  F   CK         RN P +  E W+LF EY K DV     I  R
Sbjct: 121 DRQKLEEGKDLIRYFCVPCKATRSNGGRTRNLPADAPEKWKLFTEYNKRDVETEMAIQAR 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L+  P+   E E + +DQ INDRG  VD           +  +    +  ++LT   + +
Sbjct: 181 LKKFPVPESEWENYVIDQEINDRGILVDTTFVTQAICCDERSKAVCLERAQNLTD--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  + GL +E L ++    V    K  T    +V   R + S+++V K  
Sbjct: 239 PNSPLQLMDWLHGK-GLSVESLAKS---EVTKMLKTATGDVREVLELRQQLSKTSVKKYM 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            +     +D R RG  QF GA+RTGR++G +   QNLP+   +  +  + +         
Sbjct: 295 AMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLAQLKEVRTLVKDGDFELL 354

Query: 353 D---PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
           D        ++S  +R+  +     + VVAD A IEARVLAW+AGEQW L  F    D+Y
Sbjct: 355 DMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLAGEQWVLDVFREHGDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             T +R F+    +     D R  GK   L+ GY G   A   M                
Sbjct: 415 CETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAMG--------------- 459

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+E        + +   WR  +  + + W ++ +A
Sbjct: 460 -------------------------AVESGMKEEELQPLVDLWRASNPHIVQFWWDVDRA 494

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTT-- 583
            +  ++    +     R V           L + LPSGR L Y    +G NR    +   
Sbjct: 495 VKTCVKRRVEVETHGIRCV------YKSGVLFIRLPSGRELAYAKPRIGENRFGGESVTY 548

Query: 584 -----TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                T++  R  T+GGKL ENI Q  +RD+L   M      G+DIV+ VHDEIV E P 
Sbjct: 549 EGLGMTKKWERIETFGGKLVENITQGTARDLLVFAMKQLRNRGFDIVMHVHDEIVLEVPY 608

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +   +  +M  NP WAKGLPLKA+GYE + YRK
Sbjct: 609 G-VSSVEEICSIMAENPPWAKGLPLKADGYECEFYRK 644


>gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 646

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 203/702 (28%), Positives = 305/702 (43%), Gaps = 84/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L K G+ +Y E  +  ++LFA+  D  PV++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIPEEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALE+  V   A N+ FER  L           +    W C+++ A + GLP +L+ VG 
Sbjct: 61  AALEDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLPLSLEGVGA 120

Query: 115 ALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  FC+            RN+P H  + W  F  Y   DV     
Sbjct: 121 VLGLEKQKLTEGKDLIKYFCQPCAATKANGGRTRNRPFHAPDKWEAFKRYNIRDVETEMG 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I  +L   P+ ++  E +++DQ INDRG  +D+ L      +    R +L   ++ +T  
Sbjct: 181 IQHKLRKFPVPNEVWEEYHIDQEINDRGVRLDMELVSQAIAMDTRSREELTAAIKDMT-- 238

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL    G+  + L +     +L            V   R + ++S+V
Sbjct: 239 ELENPNSVQQMKQWLSD-NGIETDSLDKKAVAELLKDAPDN---LADVLTLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   + + + SDGR RG  QF GA+RTGR+SG     QNLP+         + +     
Sbjct: 295 RKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLSEARSLVRSGD 354

Query: 349 ---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                    D    +S  +R+  I  E     VAD + IEARV+AW AGE W+ + FE G
Sbjct: 355 FDGVELLYEDVPDTLSQLIRTAFIPRENALFYVADFSAIEARVIAWFAGESWRQQVFEKG 414

Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462
            D+Y  + ++ F V   +       R  GK+ ELALGY G   A + M +   GLN    
Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLNEEEL 474

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                                      +  AWRQ + R+ E W 
Sbjct: 475 PA-----------------------------------------LVDAWRQANPRIVEFWW 493

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN---- 576
            + +A  + ++               +        L + LPSGR L Y    +G N    
Sbjct: 494 AVDRAVMEAVKYKHTTTDYG------LTFSCKSGMLFITLPSGRKLAYVKPKIGTNKFGG 547

Query: 577 --RSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
              +Y     T++  R  +YG K  ENIVQA +RDIL   M         IV+ +HDE+V
Sbjct: 548 SCITYEGVGGTKKWERLDSYGPKFVENIVQATARDILCYAMKTL--RCCSIVMHIHDELV 605

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E       +   +   M   P WAKGL L+A+GY +  Y+K
Sbjct: 606 IEADPK--VSLDAICEQMGRTPPWAKGLLLRADGYTTPFYKK 645


>gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
 gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
 gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
 gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
          Length = 644

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 210/697 (30%), Positives = 327/697 (46%), Gaps = 76/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL K G+ +YAE  D  ++LF +  D  PV++ D      +P+ ++
Sbjct: 1   MRTLSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKEIQ 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +A+ + +VT  A N+ FER  L   F + +    W CT+V +   GLP +L+        
Sbjct: 61  QAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVTGA 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             +K+ +GKELI  F   CK         RN P H  E W  F  Y   DV V   I ++
Sbjct: 121 DKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQEK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L+  P+  +E   + LDQ INDRG  +D+ L     Q  +  R +L   L+ LT   + +
Sbjct: 181 LQKFPMPEEEWNNYILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKELTD--LDN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + ++K+WL  + GL  + L + + + +L    +   +       R   ++S+V K  
Sbjct: 239 PNSVVQMKSWLSEK-GLETDSLDKASVKALLKEAPEHLSEV---LELRQLLAKSSVKKYT 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPTS 349
            +  A+ +DGR RG LQF GA+RTGR++G +   QNLP+   S  E  + +    H    
Sbjct: 295 AMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSDLEQARRLVRGGHFDAL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S+ +R+  +  +G K +VAD + IEARV+AW+AGE W+ + F T   +Y
Sbjct: 355 EILYDSIPGVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHGKIY 414

Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + ++ F V   +VTK    R  GK+ ELALGY G   A + M +              
Sbjct: 415 EASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMGA-------------- 460

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                     ++        + +  AWR  +  +  LW ++ +A
Sbjct: 461 --------------------------LDMGLTEEELKPLVYAWRNANPNIVRLWWDVDRA 494

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NNRSY 579
            ++ +         + R       +     L++ LPSGR L Y               +Y
Sbjct: 495 VKEAVTERCRTETHRIR------FEYRSGMLLIWLPSGRQLTYVKPRMGINSFGSEAVTY 548

Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                T++  R  +YG K  ENIVQA+SRD+L   M N  ++G +IV+ VHDE+V E P 
Sbjct: 549 EGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLNIVMHVHDEVVLEVP- 607

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             E     +  LM   P WA GL L+A+G+E   Y+K
Sbjct: 608 -LEICVQDVCVLMGQVPPWAHGLLLRADGFECDFYKK 643


>gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
 gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017]
          Length = 645

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 212/700 (30%), Positives = 322/700 (46%), Gaps = 81/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L +D ET S +DL+KCG+ KY+E  D  ++LFA+  D  PVE+ D   D  +P  + 
Sbjct: 1   MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +L +  V   A N+ FER  L     LD  +    W CT+V   + GLP +L  VG  L
Sbjct: 61  TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            L  QK+ EGK+LI  FC             RN P+H    W  F  Y   DV V   I 
Sbjct: 121 GLDKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIAIQ 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P+     + ++LDQ INDRG  +D        Q+ ++ +  L+Q+L+ LT   +
Sbjct: 181 GKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   + +++ WL    GL  E L +     +L     +     QV   R + ++S+V K
Sbjct: 239 ENPNSVLQMRGWLLDH-GLETESLGKKAVAELLEQ--PIDENLKQVLVLRQQLAKSSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL---P 347
              +     SD R RG  QF GA+RTGR++G     QNLP+   S     + +       
Sbjct: 296 YQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLSEARSLVKQSNFE 355

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +   ++S+ +R+  +  EG K +V+D + IEARV+AW++GE+W+ + F+ G D
Sbjct: 356 MLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGGD 415

Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKM-ASTTGLNLNTFAH 464
           +Y  + ++ F V   +       R  GK+ ELALGY G   A + M A   GL  +    
Sbjct: 416 IYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMDALEMGLTED---- 471

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                  + +  +WR  +  ++ELW  +
Sbjct: 472 -------------------------------------ELQPLVNSWRDSNINITELWWAV 494

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN- 581
            +A +  ++  ++           +  +     L + L SGR LVY    +G N+     
Sbjct: 495 DKAVKTCVKERRSTSTHG------IKFEYKSGFLFIQLLSGRKLVYVKPKIGENKFGGEA 548

Query: 582 ------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                   T++  R  +YG K  ENIVQA++RDIL   M N  K  Y IV  VHDE++ E
Sbjct: 549 VTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENLRK--YRIVGHVHDEVIIE 606

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P   E     +  LM+  P WA+GL L A+GYE + Y+K
Sbjct: 607 VP--MESKVEDICQLMSQTPKWAEGLLLNADGYECEFYQK 644


>gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM
           10507]
          Length = 645

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 214/697 (30%), Positives = 325/697 (46%), Gaps = 78/697 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL+KCG+ KYA      V+LF +  D   V + D      +P+ + 
Sbjct: 4   MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQIPEEVI 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +T VT  A N+ FER  L       +    W CT+V + + GLP +L++ G AL L
Sbjct: 64  SALSDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSLESAGAALGL 123

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+ EGK+LI  F   C+         RN+P H  E W  F  Y   DV    +I KR
Sbjct: 124 EKQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHDPEKWERFKAYNLRDVETEMQIQKR 183

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+     E ++LDQ INDRG  VD+ L      +    R +L   L+ LT   + +
Sbjct: 184 LSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAMDARSREQLTDALQELTG--LDN 241

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              ++++K WL    GL  + L +     ++   +        V + R + ++S+V K  
Sbjct: 242 PNSVQQMKQWLADH-GLETDTLGKKVVAELV---RSAPEPLKTVLSLRQQLAKSSVKKYA 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349
            +  A+ +DGR  G  QF GA+RTGR+SG +   QNLP+   S     + +    +    
Sbjct: 298 AMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMSDLAQARALMRGGNYEAI 357

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                D    +S  +R+  +  +G+K +VAD + IEARV+AW AGE+W+LK FE G+D+Y
Sbjct: 358 SMLYEDIPDTLSQLIRTAFVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGDDIY 417

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + ++ F+V   +       R  GK+ ELALGY G   A + M                
Sbjct: 418 SASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG--------------- 462

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+E        + +  AWR  +  +++ W ++ +A
Sbjct: 463 -------------------------ALEMGLAEEELQPLVDAWRTSNPMITQFWWDVDRA 497

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR------SY 579
            ++ ++    + +        ++       L + LPSGR L Y    +G N+      +Y
Sbjct: 498 VKECVKKRVPMESHG------LHFDYRSAMLFITLPSGRRLAYVKPRIGENQFGRESVTY 551

Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
           +  +  ++  R  +YG K  ENIVQ  +RDIL   M         IV  VHDEI+ E   
Sbjct: 552 MGVSGAKKWERLESYGPKFVENIVQGTARDILCYAMRTL--RNCAIVAHVHDEIIIEA-- 607

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               + S +   M   PSWAKGL L+A+GYE + Y+K
Sbjct: 608 DRRMSLSAVCEQMGRTPSWAKGLKLRADGYECEFYQK 644


>gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 646

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 203/701 (28%), Positives = 316/701 (45%), Gaps = 82/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S   L K G+ +Y E  +  ++LFA+  D  PV++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDHQPVQVIDLACGEQIPKEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALE+ DV   A N+ FER  L           +    W C++V A + GLP +L+ VG 
Sbjct: 61  LALEDEDVIKWAFNAAFERICLSRFLGYPTGEYLDPESWRCSMVWAATMGLPLSLEGVGA 120

Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  FC+            RN+P H  + W +F +Y   DV     
Sbjct: 121 VLGLEKQKLTEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETEMG 180

Query: 171 IFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I +R    P+ ++  + +++DQ INDRG  +D+ L     ++    RTKL + ++ +T  
Sbjct: 181 IQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTKLTETMKEIT-- 238

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL    GL  + L +     +L   K   P+  QV   R + ++S+V
Sbjct: 239 ELENPNSVQQMKAWLSD-NGLETDTLGKKAVAELL---KSAPPKLSQVLTLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---H 345
            K   + + + +DGR RG  QF GA+RTGR+SG     QNLP+   S     + +    +
Sbjct: 295 RKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLSDLAEARSLVRSGN 354

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                    D    +S  +R+  I  EG + +VAD + IEAR++AW AGE+W+   F  G
Sbjct: 355 FEAVELLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGEKWRQDVFAKG 414

Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ F V   +       R  GK+ ELALGY G   A + M +          
Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGA---------- 464

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                         ++          +  AWRQ +  + + W  
Sbjct: 465 ------------------------------LDMGLTEDELPPLVDAWRQSNPNIVKFWWN 494

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581
           +  A  + ++               +        L + LPSGR L Y    +G N+    
Sbjct: 495 VDHAVMEAVKFKHTTSEYG------LTFSCRSGMLFITLPSGRKLAYVKPKIGTNKFGGQ 548

Query: 582 -------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                   +T++  R  +YG K  ENIVQA +RDIL   M         IV+ +HDE+V 
Sbjct: 549 CITYEGIGSTKKWERLDSYGPKFVENIVQATARDILCYAMQTL--RCCSIVMHIHDEVVI 606

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E   +   +   +   M   P WAKGL L+A+GY +  Y+K
Sbjct: 607 EADPS--MSLDAICEQMGRTPPWAKGLLLRADGYATPFYKK 645


>gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 649

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 199/701 (28%), Positives = 317/701 (45%), Gaps = 79/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S ++L K G+ +YAE  D  ++LF +  D   V++ D      +P  + 
Sbjct: 1   MKFISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            AL +  V   A N+ FER  L     +     +    W CT++ A + GLP +L+ VG 
Sbjct: 61  NALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGVGA 120

Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L    QK+ +GK LI  FC             RN P+H  E W++F  Y K DV     
Sbjct: 121 VLGFKKQKLSQGKNLIKYFCIPCSPTKSNGGRTRNLPHHDIEKWKMFTFYNKRDVETEMA 180

Query: 171 IFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I  +L        E + ++LDQ IND G  +D+          +  + +  ++ + LT  
Sbjct: 181 IQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFVRQAISCDEKFKAENIKKAKELTG- 239

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +     +LK WL L+ G+  + L++     +L        +  +  + R + ++S+V
Sbjct: 240 -LENPNSPAQLKDWL-LKQGMKTDSLSKAVVSELLQ---DSDGEIHEALSIRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP- 347
            K  ++   + SD R RG +QF GA+RTGR+SG +   QNLP+      +  + +     
Sbjct: 295 KKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPDLKQARSLVKSGN 354

Query: 348 --TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                        ++S+ +R+  I   G + +VAD + IEARV+AW+AGE+W++  F  G
Sbjct: 355 FTALDLLYDSIPSVLSELIRTAFIPRYGSRFIVADFSAIEARVIAWLAGERWRIDVFAGG 414

Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ FNV   +       R  GK+ ELALGY G   A + M +          
Sbjct: 415 GDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGSVGALKAMGAIQ-------- 466

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                              +    + +  AWR  +  ++ LW  
Sbjct: 467 --------------------------------MGLVEDELKPIVDAWRNSNPNITSLWWR 494

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581
           + +A +  ++  + I                   L + LPSGR L Y    +G NR    
Sbjct: 495 IDRAVKTVVKTKQPIEIYGIGIF------YQSGILFIKLPSGRRLAYVKPLIGENRFGGE 548

Query: 582 TT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           +        T++  R  +YG K  ENIVQA+SRDILAE M+      + IV+ VHDE+V 
Sbjct: 549 SVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAMLKLATHEFQIVMHVHDEVVI 608

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P+    +   +  +M+  P+WAKGL L A+GYE + Y+K
Sbjct: 609 EAPNK-VSSVEEICRIMSETPAWAKGLILNADGYECEFYKK 648


>gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
 gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704]
          Length = 645

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 211/697 (30%), Positives = 314/697 (45%), Gaps = 78/697 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL+KCG+ KYA      V+LF +  D   V + D      +P+   
Sbjct: 4   MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYAADGGDVHVVDLACGEQIPEEAI 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +T VT    N+  ER  L       +    W CT+V + + GLP +L++ G AL L
Sbjct: 64  SALSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCTMVWSATLGLPLSLESAGAALGL 123

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+ EGK+LI  F   C+         RN+P H  E W  F  Y   DV    +I KR
Sbjct: 124 EKQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHAPEKWERFKAYNLRDVETEMQIQKR 183

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+     E ++LDQ INDRG  VD+ L      I    R +L   +  LT   + +
Sbjct: 184 LSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAIDTRSRERLTAAMRELT--ELEN 241

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               +++K WL    GL  + L +     ++ +  +      +V + R + ++S+V K  
Sbjct: 242 PNSAQQMKQWLADH-GLETDTLGKKAVAELVKTAPEP---LREVLSLRQQLAKSSVKKYT 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPTS 349
            +  A+ +D R  G  QF GA+RTGR+SG +   QNLP+         + +    +    
Sbjct: 298 AMENAVCADSRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMGDLAEARALVRSGNYEAL 357

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                D    +S  +R+  +  +G+K +VAD + IEARV+AW AGE+W+LK FE G D+Y
Sbjct: 358 SVLYEDIPDTLSQLIRTAYVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGGDIY 417

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + ++ F+V   +       R  GK+ ELALGY G   A + M                
Sbjct: 418 CASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG--------------- 462

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+E        + +  AWR  +  +++ W ++ +A
Sbjct: 463 -------------------------ALEMGLAEEELQPLVDAWRGSNPMITQFWWDVDRA 497

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR------SY 579
            +  I           R             L + LPSGR L Y    +G N+      +Y
Sbjct: 498 VKDCIRQRIPTETHGLR------FDYRSAMLFINLPSGRRLAYVKPRIGENQFGGESVTY 551

Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
           +  + T++  R  +YG K  ENIVQ  +RDIL   M         IV  VHDEI+ E   
Sbjct: 552 MGVSGTKKWERLESYGPKFVENIVQGTARDILCYAMQTL--KNCSIVAHVHDEIIIEA-- 607

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               + + +   M   P WAKGL L+A+GYE + Y+K
Sbjct: 608 DRRMSVAAVCEQMGRTPPWAKGLKLRADGYECEFYQK 644


>gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
 gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum
           WAL-14673]
          Length = 646

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 201/701 (28%), Positives = 315/701 (44%), Gaps = 82/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S   L K G+ +Y E  +  ++LFA+  D   V++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPKEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALEN  V   A N+ FER  L           +    W C+++ A + GLP +L+ VG 
Sbjct: 61  LALENETVIKWAFNANFERICLSRFLGYPTGEYLDSESWRCSMIWAATMGLPLSLEGVGA 120

Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  FC+            RN+P H  + W +F +Y   DV     
Sbjct: 121 VLGLEKQKLSEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETEMG 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I +RL   P+ ++  + +++DQ INDRG  +D+ L     ++    RT+L + ++ +T  
Sbjct: 181 IQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTELTETMKEIT-- 238

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL    GL  + L +   + V    K  +P+  QV   R + ++S+V
Sbjct: 239 ELENPNSVQQMKAWLSD-NGLETDTLGK---KAVTELLKSASPKLSQVLTLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---H 345
            K   + + + +DGR RG  QF GA+RTGR+SG     QNLP+         + +    +
Sbjct: 295 RKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLAEARSLVRSGN 354

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                    D    +S  +R+  I  EG + +VAD + IEARV+AW AGE+W+ + F  G
Sbjct: 355 FEAVKLLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGEKWRQEVFAKG 414

Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ F V   +       R  GK+ ELALGY G   A + M +          
Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGA---------- 464

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                         ++          +  AWRQ +  + + W  
Sbjct: 465 ------------------------------LDMGLTEEELPPLVDAWRQSNPNIVKFWWN 494

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581
           +  A  + ++      +        +        L + LPSGR L Y    +G N+    
Sbjct: 495 VDHAVMEAVKFKHTTSSYG------LTFSCRSGMLFITLPSGRKLAYVKPKLGTNKFGGQ 548

Query: 582 -------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                    T++  R  +YG K  ENIVQA +RDIL   M         IV+ +HDE+V 
Sbjct: 549 CITYEGIGGTKKWERLDSYGPKFVENIVQATARDILCYAMKTL--RCCSIVMHIHDEVVI 606

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E       +   +   M   P WAKGL L+A+GY +  Y+K
Sbjct: 607 EA--DPRMSLEAVCEQMGRTPPWAKGLLLRADGYATPFYKK 645


>gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6]
 gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200]
 gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6]
          Length = 645

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 205/699 (29%), Positives = 325/699 (46%), Gaps = 79/699 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID E+ S  D++KCG  KY+E  D  ++LFA+  D  PVE+ D      +P+ + 
Sbjct: 1   MKHLSIDIESFSSADISKCGAYKYSESSDFEILLFAYSVDGQPVEVVDLAQGETIPEDVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           ++L +  V   A N+ FER  L     L+  +    W CT+V A + GLP +L  VG  L
Sbjct: 61  KSLSDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVWAATLGLPLSLAGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
            L  QK+ EGK+L+  FC             RN P H  + WR F  Y   DV V   I 
Sbjct: 121 GLDKQKLSEGKDLVRYFCMPCNATKVNQGRTRNLPRHSLDKWRDFVAYNIRDVEVEVAIQ 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++L   P++ +  E ++LDQ INDRG  +D+ LA +   + +V + +++++L+ LT   +
Sbjct: 181 QKLSNFPVTQEIWEEYWLDQEINDRGIEIDMILADSAVNLDEVSKNEINEQLKKLTG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   + ++++WL    GL +E L +   + ++        +  +V   R + ++S+V K
Sbjct: 239 ENPNSVLQMRSWLSQH-GLEVESLGKAAVKELIEQ--TNDDKLKEVLLLRQQLAKSSVRK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +      D R RG  QF GA+RTGR++G     QNLP+   S     + +       
Sbjct: 296 YQAMQNYACLDNRARGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLAEARELVRNGEYE 355

Query: 351 ---TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +  +++S+ +R+  I   G K +V+D + IEARV+AW+AGE+W+ + F  G D
Sbjct: 356 LLALLYDNVPEVLSELIRTAFIPKPGMKFIVSDFSAIEARVIAWLAGEKWRKEVFRNGGD 415

Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + ++ F V   +       R  GK+ ELALGY G   A   M              
Sbjct: 416 IYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAMG------------- 462

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                      A+         + +  +WR+ +  +++LW ++ 
Sbjct: 463 ---------------------------ALNMGLTEDELQPLVASWRETNPAITKLWWDID 495

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN-- 581
            A +  +  G             +  +     + + L SGR L Y    +G NR      
Sbjct: 496 SAAKGCVSVGAKTETHG------ITFEYKSGFMFIQLLSGRRLAYVKPRIGQNRFGGAAV 549

Query: 582 -----TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                 TT++  R  +YG K  ENIVQA++RDIL   M N     Y IV  VHDE++ E 
Sbjct: 550 TYEGVGTTKKWERLESYGPKFVENIVQAMARDILCFAMQNL--KDYRIVGHVHDEVIIEV 607

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P         +  +M+  P+WAKGL L A+GYE   Y+K
Sbjct: 608 PKE--VTVEEVNSIMSQTPNWAKGLLLNADGYECDFYQK 644


>gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26]
 gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55]
 gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34]
 gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79]
 gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291]
 gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58]
 gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291]
          Length = 652

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 222/701 (31%), Positives = 336/701 (47%), Gaps = 76/701 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +D+ K G+ +Y +  +  ++LFA+ FD+  V++ D V+D  +P+ + 
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL +  V   A N+ FERT +    N+++  + W CT++ A + GLP +L +V +ALK 
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
               QKM+EGK LI  FCK            RN P H  E W  F EYCK DV V REI 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180

Query: 173 KRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L    + E+E+  WYLDQ IND G  VD  L     +       KL +E   +T   +
Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           ++     +LK WL  + G  +  LT+ +   +L          +++   R   S++++ K
Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDEN--VVRILELRKLMSKTSIKK 296

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A  +D R+RG LQF GA+RTGRW+G +   QNLP+      +L + +       
Sbjct: 297 YEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFD 356

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                      ++S  +R+  I SEG + +V+D + IEARV+AW AGE+W+L  F +   
Sbjct: 357 LIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLDVFNSHGK 416

Query: 408 LYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + +  F V     +     R  GK+ ELALGY G   A   M +            
Sbjct: 417 IYEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTSMGAIK---------- 466

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                 + +   WR  +  +++ W ++ 
Sbjct: 467 ------------------------------MGLDEEELQPLVTTWRNANPNITKFWWDVD 496

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDV-------GNN 576
           +A ++ I++   +  +       +    +   L + LPSGR L Y    +       G+ 
Sbjct: 497 KAAKKAIKDRTIVKLQ-----HGIKFIYNPGVLFIELPSGRRLSYLRPKIEPHTTFSGDK 551

Query: 577 RSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
            +Y  +  T++Q  R  TYG KL ENIVQA +RD L E M N T AGY IV+ VHDE+V 
Sbjct: 552 ITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVI 611

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +       +   +  +M    SWAKGLPLKA+GYE   Y+K
Sbjct: 612 DVDKK-GGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
 gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str.
           Langeland]
          Length = 658

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 224/702 (31%), Positives = 323/702 (46%), Gaps = 76/702 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + TL ID ET S +D+   G  KY E  D  ++LFA+ F+D PV++ D  +   +P  + 
Sbjct: 5   IDTLSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVF 64

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL + ++   A N+ FER  +K  +    P  +W CT+V A + GLPS+L  VG+ALK 
Sbjct: 65  YALTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKALKF 124

Query: 119 --SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
               QKM+EGK LI  F   CK         RN P H  E W  F EYCK DV V REI 
Sbjct: 125 EEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVEREIR 184

Query: 173 KRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             L    +K +E   W LDQ INDRG   D+ L     +       +L +    LT   +
Sbjct: 185 NLLNRYETKVEEQKLWQLDQHINDRGIGTDLILIKQAIECDTNYTERLTKAAIELTG--L 242

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT-PQAIQVFNNRMRASRSAVL 289
            +     ++K W+    G  ++ LT+T+   ++     L   + I++   R   +++++ 
Sbjct: 243 ENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLELRQLMAKTSIK 302

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HL 346
           K +T+  A   DGR+RG LQF GA+RTGRW+G +   QNLP+      +  +        
Sbjct: 303 KYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREGKF 362

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                        +S  +R+  I  EG + +V+D + IEARV+AW AGEQW+L  F T  
Sbjct: 363 QEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFSTHG 422

Query: 407 DLYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  + ++ F VA    +   + R  GK+ ELALGY G   A   M     +       
Sbjct: 423 KIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEEELP- 481

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                    + K+WR  +  +++ W ++
Sbjct: 482 ----------------------------------------GLVKSWRNANPNITKFWWDV 501

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS------ 578
            +A ++ I     +  +       +    D   L + LPSGR L Y              
Sbjct: 502 DKAAKKVIRERTTVNLQYG-----LKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETFSGD 556

Query: 579 -----YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                 +  T++Q  R  TYG KL ENIVQA SRD L E M    KAGYDIV+ VHDE+V
Sbjct: 557 KITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAGYDIVMHVHDEVV 616

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            + P         +  LM     WA GLPLKA+GYE   Y+K
Sbjct: 617 LDIPKDRA-TVKEINELMGQPIEWAPGLPLKADGYECNYYQK 657


>gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
 gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum
           WAL-14163]
          Length = 646

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 215/695 (30%), Positives = 327/695 (47%), Gaps = 75/695 (10%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
            L ID ET S +DL KCG+  YA+     V+LFA+ FD    ++ D      +P  +  A
Sbjct: 4   ILEIDIETYSDVDLIKCGVYAYADSPAFEVLLFAYSFDGGETQVIDLAQGEELPGEVSAA 63

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + + DV   A N+ FERT L   F   +    W C+ V A    LP +L+ VG  L L  
Sbjct: 64  IFDDDVMKTAFNANFERTCLSKHFGKQLSPESWHCSAVQAAMLALPRSLEEVGAVLGLEQ 123

Query: 121 QKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE 176
           QKM+EGK+LI  F   CK         RN P +  E W LF  YC  DV V +EI ++L+
Sbjct: 124 QKMKEGKDLIRYFCMPCKPTKANGGRTRNLPCHAPEKWELFKSYCIRDVDVEKEIRRKLQ 183

Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             P+   E EL+ LDQ INDRG  VD  L         + +  + +    LT   + +  
Sbjct: 184 HFPIPESEMELYRLDQKINDRGVLVDRELVRQAVSCDLLYKDVVTKRAYELTG--LENPN 241

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
            + ++K+WL    G+ +E L++ T   ++        +  ++   R+  ++++V K   +
Sbjct: 242 SVAQIKSWLGE-NGVEMESLSKKTVAGLIEE---SDGEVQELLRLRLLMAKTSVKKYEAM 297

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL---PTSIT 351
             ++ SDGR+ G LQF GA+RTGRW+G +   QNLP+      E+ + +           
Sbjct: 298 ERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHILDLEMARNLVKQGRFEDVEL 357

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                  ++S+ +R+  I   G + VVAD + IEARVLAW++GE+W+L+ F +   +Y  
Sbjct: 358 LYDSTPNVLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERWRLEVFASHGKIYEA 417

Query: 412 TYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           + +  F+V   +VTK       GK+ ELALGY G   A   M                  
Sbjct: 418 SASAMFHVPIEEVTKGSPFRQKGKISELALGYGGAVGALTSMG----------------- 460

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                  A++   +      +  AWR  +  +++ W ++  A  
Sbjct: 461 -----------------------ALDMGLVEEELAPLVSAWRSANPHITQFWWDVDAAAV 497

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT--- 584
           + +   K   A +      +  +     L + LPSGR L Y    +  N+   N  T   
Sbjct: 498 KAVTEKKKTRAGR------IVFEYKSGILFVELPSGRKLSYVKPRMALNKFGRNGLTYEG 551

Query: 585 ----RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
               ++  R  TYG KL ENIVQ  +RD+LAE M+   + GY IV+  HDEI+ E P+  
Sbjct: 552 IAENKKWDRIETYGPKLVENIVQGTARDLLAEAMLRVEEMGYPIVMHCHDEIIAEVPEGT 611

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             +   +  +M   P WA GLPL+A+GYE   Y+K
Sbjct: 612 -GSVEEMCAVMAVQPEWADGLPLRADGYECAFYKK 645


>gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 662

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 206/717 (28%), Positives = 315/717 (43%), Gaps = 98/717 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S ++L KCG+ KYAE     ++LF +  D  PV++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACF--------------------NLDIPIHRWICTLV 98
           +AL +  VT  A N+ FER  L                           +    W C++V
Sbjct: 61  DALTDDTVTKWAFNANFERVCLSRHLTDLGRSLDPFHDQHPLSKKCARFLNPAGWKCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAW 154
            +   GLP +L+ VG  L L +QKM+EG+ELI  F   CK         RN P H  + W
Sbjct: 121 WSAYLGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCIPCKETKANGGRTRNLPQHALDKW 180

Query: 155 RLFGEYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            LF  Y K DV V   I +R    P+  +  E ++LDQ INDRG  +D+ LA     +  
Sbjct: 181 NLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELAKQAVALDA 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             R  L   L+  T   + +   + ++  WL  + GL  + L +   Q +L + ++    
Sbjct: 241 KSRESLMAALKERTG--LENPNSVIQMLDWL-EQHGLKTDSLGKKNVQELLKTAQEP--- 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R + ++S+V K   +      DGR RG  QF GA+RTGR++G     QNLP+ 
Sbjct: 295 LRSVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGRFAGRHIQLQNLPQN 354

Query: 333 SRSHEELDQIIT---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                   + +    +             ++S  +R+  +   G K VV+D + IEARV+
Sbjct: 355 HLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARVI 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKA 447
           +W+AGE+WK + F  G+D+Y +T ++ F V   +     + R  GK+ ELA GY G   A
Sbjct: 415 SWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQKGKIAELACGYGGSVGA 474

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            + M                                         A++          + 
Sbjct: 475 LKAMG----------------------------------------ALDMGIPEEELGNLV 494

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           ++WR  +  + + W ++  A + TI+    +       V  +        L + LPSGR 
Sbjct: 495 QSWRSANPHIVDFWWQVDGAVKTTIKQRIPV------WVNNIRFFCQSGMLFIELPSGRR 548

Query: 568 LVY--RDVGNNRSYLNT-------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
           L Y    +G NR    +        T++  +  +YG K  ENIVQ +SRDIL   M    
Sbjct: 549 LSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENIVQGISRDILCYAMQTL- 607

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                IV  VHDE++ E P     +   +   M   P WA+GL L+A+GY  + Y+K
Sbjct: 608 -RCCAIVGHVHDELIIECPKD--TSVDAICEEMGRTPPWAEGLVLRADGYACEFYQK 661


>gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
 gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1]
          Length = 646

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 210/701 (29%), Positives = 315/701 (44%), Gaps = 82/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DL K G+ +Y E  D  ++LF +  D   V++ D +    +P  + 
Sbjct: 1   MRALNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIPSKVV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
           +AL + DVT  A N+ FER  L     L     +    W CT+V +   GLP +L+  G 
Sbjct: 61  DALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGTGA 120

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  F   CK         RN P H  + W  F  Y   DV     
Sbjct: 121 VLGLEKQKLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETEMA 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I ++L   P+       ++LDQ INDRG  +D+ L     ++ +  R+KL   +  LT  
Sbjct: 181 IQQKLAKFPVPEGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIRELT-- 238

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   + ++K WL    GL  + L +     +L +  +      +V   R   ++S+V
Sbjct: 239 ELENPNSVVQMKQWLSDH-GLETDTLGKKAVVELLKTASEP---LGKVLELRQSLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP- 347
            K   +   + +DGR RG  QF GA+RTGRW+G +   QNLP+      E  + +     
Sbjct: 295 KKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQNHMPDLEQARSLVRSGN 354

Query: 348 --TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                       +++S+ +R+  +  +G K +VAD + IEARV+AW+AGE+W+ + FE+G
Sbjct: 355 FAALEMLYDSVPEVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVFESG 414

Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ F+V   +       R  GK+ ELALGY G   A + M            
Sbjct: 415 GDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKAMG----------- 463

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                        A+E        + +  AWR  + ++  LW +
Sbjct: 464 -----------------------------ALEMGLEEEELQPLVSAWRSSNPKIVRLWWD 494

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581
           + +A  + +           R               + LPSGR L Y    +G NR   +
Sbjct: 495 IDRAAMKAVRERTTTETHGIR------FSYQSGMFFITLPSGRRLAYVKPRIGQNRFGSD 548

Query: 582 -------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                     ++  R  +YG KLTENIVQA SRDIL   M N       IV+ VHDEIV 
Sbjct: 549 CITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNLRH--CSIVMHVHDEIVI 606

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E       +   +   M   P WAKGL L+A+GYE+  Y+K
Sbjct: 607 EA--DRRMSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKK 645


>gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4]
          Length = 649

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/699 (32%), Positives = 338/699 (48%), Gaps = 75/699 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL KCG+  Y+E  D  ++LFA+  DD  VE+ D      +P  + 
Sbjct: 1   MKTLIIDIETYSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIPANIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +A+ +  V   A+N+ FERT L   F + +P  +W CT V A   GLP  L  V + LKL
Sbjct: 61  KAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALMLGLPGYLDGVAKCLKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QKM+EGK LI  F   CK         RN P H    W  F +YCK DV V REI K+
Sbjct: 121 QGQKMKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPARWDTFKDYCKQDVEVEREIRKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  PL + EQELW LDQ IND G  +D  L +   +     + +L +E   LT   + +
Sbjct: 181 LEVFPLPTMEQELWELDQKINDEGVVIDTNLVNHAIKADKAFQDELIEEAVRLTG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL L+ GL ++ L +   + ++S  +   P+  ++   R   S+++V K  
Sbjct: 239 PNSPAQLKGWL-LKQGLEVDSLAKKNVEALMSEVEN--PEVKRLLELRRAMSKTSVKKYE 295

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349
            +  ++ SD R+RG LQF GASRTGRW+G +    NLPR S    ++ + +         
Sbjct: 296 AMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSLKDLQVARELLESGKYEAL 355

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  +R+  I S+G + VVAD + IEARV+AW+AGE+W++  F++   +Y
Sbjct: 356 EVLFESVSDVLSQLIRTAFIPSKGHRFVVADFSAIEARVIAWLAGERWRMDVFQSHGKIY 415

Query: 410 VTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + A+ F V           R  GK+ ELALGY G   A  +M                
Sbjct: 416 EASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALMQMG--------------- 460

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+E          +  AWR+ + ++ +LW  +  A
Sbjct: 461 -------------------------ALEMGLTEDELPELVSAWREANPKIVKLWWGIEAA 495

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---------GNNRS 578
             + ++    +     +    +     K  L + LPSGRSL Y                +
Sbjct: 496 AIKAVKEKAVV-----KMQHGLTFHYTKGILFITLPSGRSLAYVRPKIGIDERFGKEQLT 550

Query: 579 YLN--TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           Y      ++Q  R  TYGGKLTENI+QA++RD LA  M+   +AGY I   VHDE++ + 
Sbjct: 551 YEGTEQGSKQWGRIPTYGGKLTENIIQAIARDCLAVSMLRLDEAGYRINFHVHDEVILDV 610

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P     +   + ++M  +  WA GLPL A+ +E+  Y+K
Sbjct: 611 PI-ATGSMEEVENIMGQSIDWAPGLPLGADSFETFYYKK 648


>gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932]
 gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196]
 gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196]
          Length = 652

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 338/701 (48%), Gaps = 76/701 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +D+ K G+ +Y +  +  ++LFA+ FD+  V++ D V+D  +P+ + 
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL +  V   A N+ FERT +    N+++  + W CT++ A + GLP +L +V +ALK 
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
               QKM+EGK LI  FCK            RN P H  E W  F EYCK DV V REI 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180

Query: 173 KRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L    + E+E+  WYLDQ IND G  VD  L     +       KL +E   +T   +
Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           ++     +LK WL  + G  +  LT+ +   +L          +++   R   S++++ K
Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDEN--VVRILELRKLMSKTSIKK 296

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A  +D R+RG LQF GA+RTGRW+G +   QNLP+      +L + +       
Sbjct: 297 YEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFD 356

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                      ++S  +R+  I SEG + +V+D + IEARV+AW+AGE+W+L  F +   
Sbjct: 357 LIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGK 416

Query: 408 LYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + ++ F +     +   + R  GK+ EL+ GY G   A   M +            
Sbjct: 417 IYEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALISMGAIK---------- 466

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                 + +  AWR  +  +++ W ++ 
Sbjct: 467 ------------------------------MGLKEEELQPIVTAWRNANPNITKFWWDVD 496

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDV-------GNN 576
           +A ++ I++   +  +       +    +   L + LPS R L Y    +       G+ 
Sbjct: 497 KAAKKAIKDRTIVEIQ-----HGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDK 551

Query: 577 RSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
            +Y  +  T++Q  R  TYG KL ENIVQA +RD L E M N T AGY IV+ VHDE+V 
Sbjct: 552 ITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVI 611

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +       +   +  +M    SWAKGLPLKA+GYE   Y+K
Sbjct: 612 DVDKK-GGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
 gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto]
          Length = 655

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/705 (32%), Positives = 325/705 (46%), Gaps = 81/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S ID+   G  KY E  D  ++LFA+ F+D PV++ D      +PQ + 
Sbjct: 1   MTTLAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALPQRVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSNGLPSALKAVGEA 115
           +AL + DV   A N+ FER+ +K  F +     P  +W CT++ A + GLPS+L  VG+A
Sbjct: 61  DALYDPDVIKTAFNANFERSAIK--FGVSSLPCPPGQWECTMIKALTLGLPSSLDMVGKA 118

Query: 116 LKL--SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           LKL    QKM+EGK LI  FCK            RN P H  E W  F EYCK DV V R
Sbjct: 119 LKLEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEVER 178

Query: 170 EIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           EI   L    +K +E   W LDQ INDRG   D+ L     +       +L +    LT 
Sbjct: 179 EIRNLLNRYETKAEEQKLWQLDQHINDRGIDTDLILIKQAIECDTNYTERLTKAAIKLTG 238

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT-PQAIQVFNNRMRASRS 286
             + +     ++K W+    G  ++ LT+T+   ++   K L   + I++   R   +++
Sbjct: 239 --LENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLELRQLMAKT 296

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT-- 344
           ++ K +T+  A   DGR+RG LQF GA+RTGRW+G +   QNLP+      +  +     
Sbjct: 297 SIKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVRE 356

Query: 345 -HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                           +S  +R+  I  EG + +V+D + IEARV+AW AGEQW+L  F 
Sbjct: 357 GKFEEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFS 416

Query: 404 TGEDLYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           T   +Y  + ++ F V     +   + R  GK+ ELALGY G   A   M     +    
Sbjct: 417 THGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEEE 476

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                       + K+WR  +  +++ W
Sbjct: 477 LP-----------------------------------------GLVKSWRNANPNITKFW 495

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS--- 578
            ++ +A ++ I     +  +       +    D   L + LPSGR L Y           
Sbjct: 496 WDVDKAAKKAIRERTTVNLQYG-----LKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETF 550

Query: 579 --------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                    +  T++Q  R  TYG KL ENIVQA SRD L E M    K GYDIV+ VHD
Sbjct: 551 SGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVNKEGYDIVMHVHD 610

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+V + P         +  LM     WA GLPLKA+GYE   Y K
Sbjct: 611 EVVLDIPKDRA-TVKEINELMGQPIKWAPGLPLKADGYECNYYMK 654


>gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
 gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528]
          Length = 650

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 214/700 (30%), Positives = 310/700 (44%), Gaps = 76/700 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET   +D+ K G  KY E     ++LFA+ F+D PVE+ D      +PQ +K
Sbjct: 1   MDTLAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELPQKVK 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL N  +   A N+ FE   LK      I    W CT+V +   GLP +L  VG+ L+ 
Sbjct: 61  TALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVLRF 120

Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
               QKM+EGK LI  FCK            RN P H  E W +F +Y K DV V R I 
Sbjct: 121 EEDKQKMKEGKALIQYFCKPCKPTKSNGGRTRNLPEHAPEKWEIFKKYNKQDVEVERAIR 180

Query: 173 KR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +    P +  EQ LW LDQ INDRG   D+ L     +  +    +L +E   LT   +
Sbjct: 181 NKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATELTG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           S+     +LK W+    G  ++ LT+ +   ++        +  ++   R   +++++ K
Sbjct: 239 SNPNSPTQLKRWIGERVGHEVKSLTKDSIPTLIKE--SKDEKVKKILELRQLMAKTSIKK 296

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLP 347
             T+  A   DGR+RG LQF GA+RTGRW+G +   QNLP+      +  +         
Sbjct: 297 YETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDDARNFIRTGQFD 356

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                       +S  +R+  I  EG + +VAD + IEARV+AW AGEQW+L  F    D
Sbjct: 357 KVEFLYDSIPDTLSQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGEQWRLDVFNNNGD 416

Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + ++ F V   +       R  GK+ ELALGY G   A   M     +  +     
Sbjct: 417 IYCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDKKKNIPEDELP-- 474

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                   + K WR     +++ W ++ 
Sbjct: 475 ---------------------------------------GLVKDWRDASPHITKFWWDVD 495

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN--------R 577
           +A ++ I     ++ +       +    D   L + LPSGR L Y               
Sbjct: 496 KAAKKAIRERTTVVLQ-----FGLKFIYDPGVLFIQLPSGRKLAYIRPKIEPGPYDKPII 550

Query: 578 SYLN--TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
           +Y     T++Q T   TYG K+ ENIVQA +RD L   M      G+ IV+ VHDE++C+
Sbjct: 551 TYEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVEDKGFHIVMHVHDELICD 610

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P   +     +  +      WA GLPLKA+GYE   Y K
Sbjct: 611 VPKG-KGTVEEICDIFGEPIEWAPGLPLKADGYECNYYMK 649


>gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016]
 gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555]
 gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 644

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 206/699 (29%), Positives = 318/699 (45%), Gaps = 80/699 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M ++ ID ET S  +L KCG+ +YAE  D  ++LF +  D   V++ D      +P  + 
Sbjct: 1   MNSISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIPNEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL +  VT  A N+ FER  L    NL   +    W C++V +   GLP +L+ VG  L
Sbjct: 61  NALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
            L  QK+ EGK+LI  FC             RN P H  + W  F  Y   DV     I 
Sbjct: 121 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRDVEAEMSIQ 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+       ++LDQ INDRG  +D+A      ++ +  R KL   ++ +T   +
Sbjct: 181 QRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALMQDITN--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   ++++K WL  + GL  + L +     +L +  +           R + ++S++ K
Sbjct: 239 ENPNSIQQMKEWL-ADNGLETDSLGKKAVAEMLKTAPEPLGTV---LELRQQLAKSSIKK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLP 347
              +  A+ +DGR RG  QF GA+RTGR+SG +   QNLP+      E  + +    +  
Sbjct: 295 YTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 354

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                     +++S+ +R+  +  EG K +VAD + IEARV+AW+AGE+W++  F+ G D
Sbjct: 355 ALTLIYDSIPEVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGGD 414

Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + ++ FNV   +       R  GK+ ELALGY G   A + M              
Sbjct: 415 IYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMG------------- 461

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                      A+E        + +  AWRQ +  +++LW ++ 
Sbjct: 462 ---------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDVD 494

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNR 577
            A +  ++               +        L ++LPSGR L Y           G + 
Sbjct: 495 HAVKTCVKQKIPTETHG------IKFIYQSGMLFIVLPSGRRLSYVKPRMGENVFGGESV 548

Query: 578 SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           +Y     T++  R  +YG K  ENIVQA+SRDIL   M         IV  VHDEI+ E 
Sbjct: 549 TYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTL--KNCSIVAHVHDEIIIEA 606

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                 + S +   M   P+WA GL L A+GYE + Y+K
Sbjct: 607 --DMRMSLSTICEQMARTPTWANGLLLSADGYECQFYQK 643


>gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 652

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 217/699 (31%), Positives = 331/699 (47%), Gaps = 75/699 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
             L ID ET S +DL KCG+ +Y E  D  ++LFA+ +DD P+ + D      +P+ + +
Sbjct: 3   KILSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELPEQVTK 62

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L + DV   A+N+ FERT +   +N  +P  +W CT V A + GLP  L  V + L L 
Sbjct: 63  DLTDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVLGLD 122

Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRL 175
           +QK   GK LI  F   CK         RN P+H  + W+ F +YCK DV V R I K++
Sbjct: 123 AQKDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAIRKKI 182

Query: 176 --EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              P+   E +LW LDQ IND G  +D  L     +      T+LD E + LT   + + 
Sbjct: 183 EKYPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELTG--LDNP 240

Query: 234 RCLEKLKTWLFLETGLHLEDL-TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               +L  WL  + GL +++   +     +L    K      ++   R   S+++  K  
Sbjct: 241 NSTTQLTVWL-KKQGLTVDNGLGKDYIPGLLDQ-AKGDETVTRMLELRKEMSKTSTKKYE 298

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349
            +  AM SD R RG LQF GA+RT RW+G +   QNLP+       + + +         
Sbjct: 299 AMERAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKFEAI 358

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                 P  ++S  +R+  I S+G + +V+D + IEARV+AW+AGE W++K F++   +Y
Sbjct: 359 ELLFNSPPFVLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHGKIY 418

Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + +  F+V   ++TK    R  GK+ ELALGY G   A + M +   GL+ +      
Sbjct: 419 EASASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMGALKMGLDADELP--- 475

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                  +  AWR  + ++ +LW ++ +
Sbjct: 476 --------------------------------------DLVTAWRNSNPKIVKLWWDVDK 497

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS-------- 578
           A    +     +     R    +        L + LPSGR L Y                
Sbjct: 498 AAMTAVREHMPV-----RIQYGITFSYKDGFLFIKLPSGRKLAYVKPKIKDGKFGRPALT 552

Query: 579 --YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
              ++   +   R  TYG KL ENIVQAV+RD LA  M+    AGYDI + VHDE++ + 
Sbjct: 553 YEGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVILDV 612

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P+TD    + +  +M+    WA GLPL+A+GYE++ Y+K
Sbjct: 613 PNTDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKK 651


>gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 662

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 209/717 (29%), Positives = 316/717 (44%), Gaps = 98/717 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S IDL KCG+ KYAE  +  ++LF +  D   V++ D      +PQ + 
Sbjct: 1   MKNISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIPQEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKAC---FNLD-----------------IPIHRWICTLV 98
           +AL + +VT  A N+ FER  L        +                  +    W C++V
Sbjct: 61  DALTDDEVTKWAFNANFERVCLSRYLSDLGVSLDPFHDNHPLSTECARFLNPEGWRCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154
            A + GLP +LK VG+ LKL  QKM+EGK LI  F   C          RN P H  E W
Sbjct: 121 WAATMGLPLSLKGVGQVLKLEDQKMDEGKALIKYFSVPCAPTKANGGRTRNMPFHDPEKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             F  Y K DV V   I +RL   P+     + + +DQ INDRG  +D+ L     ++  
Sbjct: 181 ETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDLVAKAIEMDT 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             RT+L   ++ +T   + +   ++++K WL    GL  + L +     ++ +      +
Sbjct: 241 RSRTELTTAMKDIT--ELDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIKTAPS---E 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R + ++S+V K  T+  A+  DGR RG   F GA+RTGRW+G +   QNLP+ 
Sbjct: 295 LQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQLQNLPQN 354

Query: 333 SRSHEELDQIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                   + +              D    +S  +R+  I  +G +L V+D + IEARV+
Sbjct: 355 HLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQLYVSDFSAIEARVI 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKA 447
           AW AGE W+ K F  G D+Y  + ++ F+V   +       R  GK+ ELALGY G   A
Sbjct: 415 AWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGA 474

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            + M +                                         E          + 
Sbjct: 475 LKAMGAI----------------------------------------EMGLSEDELPPLV 494

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            AWRQ +  + + W ++ +A  + +++     +        +        L + LPSGR+
Sbjct: 495 DAWRQTNPHIVKFWWDVDRAVMEAVKHKHTTSSYG------LTFSCRSGMLFITLPSGRN 548

Query: 568 LVYRDV--------GNNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
           L Y           G   +Y     T++  R  +YG K  ENIVQA SRDIL   M    
Sbjct: 549 LAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQATSRDILCYAMKTL- 607

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +IV+ +HDE+V E       +  +L   M   P WA+GL L+A+GY +  Y+K
Sbjct: 608 -RNCEIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWARGLQLRADGYTTPFYKK 661


>gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 644

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 204/699 (29%), Positives = 313/699 (44%), Gaps = 80/699 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M ++ ID ET S  +L K G+ +YAE  D  ++LF +  D   V++ D      +P  + 
Sbjct: 1   MNSISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIPDEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL +  VT  A N+ FER  L    NL   +    W C+++ +   GLP +L+ VG  L
Sbjct: 61  NALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
            L  QK+ EGK+LI  FC             RN P H  + W  F  Y   DV     I 
Sbjct: 121 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRDVEAEMSIQ 180

Query: 173 KRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +R           E ++LDQ INDRG  +D+        + +  R KL   ++ +T   +
Sbjct: 181 QRFSKFLVPENIWEEYHLDQEINDRGIAIDMTFVKQAVVMDEHSREKLMALMQDITN--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   ++++K WL  + GL  + L +     +L +  +           R + ++S+V K
Sbjct: 239 ENPNSVQQMKDWL-ADNGLETDTLGKKAVAEMLKTAPEPLGTV---LELRQQLAKSSVKK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLP 347
              +  A+ +DGR RG  QF GA+RTGR+SG +   QNLP+      E  + +    +  
Sbjct: 295 YTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 354

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                     +++S+ +R+  I  EG K +VAD + IEARV+AW+AGE+W++  F+ G D
Sbjct: 355 ALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGGD 414

Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + ++ FNV   +       R  GK+ ELALGY G   A + M              
Sbjct: 415 IYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG------------- 461

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                      A+E        + +  AWRQ +  +++LW ++ 
Sbjct: 462 ---------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDVD 494

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNR 577
           +A +  ++               +        L + LPSGR L Y           G + 
Sbjct: 495 RAVKTCVKQKTPTETHG------IKFIYQSGMLFIALPSGRRLAYVKPRMGENMFGGESV 548

Query: 578 SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           +Y     T++  R  +YG K  ENIVQA+SRDIL   M         IV  VHDEI+ E 
Sbjct: 549 TYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTL--KNCSIVAHVHDEIIIEA 606

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                 + S +   M   P+WA GL L A+GYE + Y+K
Sbjct: 607 --DMGTSLSAICEQMAKMPTWANGLLLSADGYECQFYQK 643


>gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255]
          Length = 652

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 219/701 (31%), Positives = 336/701 (47%), Gaps = 76/701 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +D+ K G+ +Y +  +  ++LFA+ FD+  V++ D V+D  +P+ + 
Sbjct: 1   MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL +  V   A N+ FERT +    N+++  + W CT++ A + GLP +L +V +ALK 
Sbjct: 61  EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120

Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
               QKM+EGK LI  FCK            RN P H  E W  F EYCK DV V REI 
Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180

Query: 173 KRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L    + E+E+  WYLDQ IND G  VD  L     +       KL +E   +T   +
Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           ++     +LK WL  +    +  LT+ +   +L          ++    R   S++++ K
Sbjct: 239 NNPNSPAQLKKWLSDKVSFEITSLTKESIPEILKQVDDEN--VVRTLELRKLMSKTSIKK 296

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A  +D R+RG LQF GA+RTGRW+G +   QNLP+      +L + +       
Sbjct: 297 YEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFD 356

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                      ++S  +R+  I SEG + +V+D + IEARV+AW+AGE+W+L  F +   
Sbjct: 357 LIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGK 416

Query: 408 LYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + ++ F V     +   + R  GK+ EL+ GY G   A   M +            
Sbjct: 417 IYEASASQMFKVPIESIKKGSELRQKGKLAELSNGYGGSVGALISMGAIK---------- 466

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                 + +  AWR  +  +++ W ++ 
Sbjct: 467 ------------------------------MGLKEEELQPIVTAWRNANPNITKFWWDVD 496

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDV-------GNN 576
           +A ++ I++   +  +       +    +   L + LPS R L Y    +       G+ 
Sbjct: 497 KAAKKAIKDRTIVEIQ-----HGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDK 551

Query: 577 RSY--LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
            +Y  +  T++Q  R  TYG KL ENIVQA +RD L E M N T AGY IV+ VHDE+V 
Sbjct: 552 ITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVI 611

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +       +   +  +M    SWAKGLPLKA+GYE   Y+K
Sbjct: 612 DVDKK-GGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651


>gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
 gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1]
          Length = 650

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 229/699 (32%), Positives = 322/699 (46%), Gaps = 74/699 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DLTK G+  YAE  D  ++LF + FDD PV+L D      +P  + 
Sbjct: 1   MTILGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLPDNVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL + ++   A N+ FERT +   FN  +P  +W CT V A + GLP  L  V + L L
Sbjct: 61  NALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK   GK LI  F   CK         RN P H  + W  F  YCK DV V R+I K 
Sbjct: 121 KQQKDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDRWAKFKSYCKQDVAVERDIRKT 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE  P+   E +LW LDQ IND G  VD  L           + KL  +   LT   + +
Sbjct: 181 LERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAKLTG--LDN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            + + +LK WL    GL +E L + +   +L   +  T    Q+   R   ++++V K  
Sbjct: 239 PKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTESST--VKQMLELRQEMAKTSVKKYL 296

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349
            +  A   DGR+RG LQF GA+RTGRW+G +   QNLPR S    +  + +         
Sbjct: 297 AMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRNSIKDLDQARQLLKAGDYEML 356

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  +R+  +  EG + +VAD + IEARV+AW+A E+W++  F T   +Y
Sbjct: 357 ELLFESVPTVLSQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKWRMDVFRTHGKIY 416

Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + +  F+V   ++TK    R  GKV ELALGYQGG  A   M                
Sbjct: 417 EASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMG--------------- 461

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+++         + K WRQ    + + W +   A
Sbjct: 462 -------------------------ALKEGLTEEELPGLVKLWRQSSPNIVKFWYDTEAA 496

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS--------- 578
             + ++    +          ++   +   L + LPSGR L Y       +         
Sbjct: 497 AIKAVKEKTTVELH-----HGIHFIYESGILFIRLPSGRRLAYIKPRIQNNPRLDKPALT 551

Query: 579 --YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                  T+Q  R YTYGGKL ENIVQAV+RD LAE ++    AGY  V+ VHDE V E 
Sbjct: 552 YEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVAGYKTVMHVHDESVMEM 611

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P     +      +M     WA GLP++A+G+ES  Y+K
Sbjct: 612 PHG-VGSLEDACRIMEQPIPWAPGLPMRADGFESNYYKK 649


>gi|332983347|ref|YP_004464788.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON]
 gi|332701025|gb|AEE97966.1| DNA-directed DNA polymerase [Mahella australiensis 50-1 BON]
          Length = 657

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 208/710 (29%), Positives = 323/710 (45%), Gaps = 89/710 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  LFID ET S  DL K G+ +Y+E  D  V+LF +  DD  V + D      +P  + 
Sbjct: 1   MRELFIDIETYSGTDLGKSGVYRYSEAPDFEVLLFGYCADDDEVRVIDLASGEALPTEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACF---NLDIP----------IHRWICTLVLARSNGL 105
           +AL +  V   AHN+ FER  L        +++              W CT+V +   GL
Sbjct: 61  DALTDETVVKWAHNAQFERVCLSRWLERQGINLKALNGNSNFLNPASWRCTMVWSAYLGL 120

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYC 161
           P +L+          QK+ EGKELI  F   CK         RN P H  + W  + EY 
Sbjct: 121 PLSLEGAALVTGAEKQKLTEGKELIRYFSSPCKPTKSNGGRTRNLPVHAPDKWEKYKEYN 180

Query: 162 KGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             DV     I KRL   P+   E + + LDQ INDRG C+D+ L     +     RT L 
Sbjct: 181 ARDVETEMAIMKRLSKFPVPEDEWKYYILDQEINDRGICLDMDLIREAIRCDRRSRTVLT 240

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           + +  +T   + +   + ++K W F E GL  E L +   + +L +  +   +       
Sbjct: 241 EAVRDITD--LDNPNSVAQMKAW-FAENGLETETLGKAAVKELLKTAPESFREV---LAL 294

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++S+V K   +  A+ SDGR+RG LQF GA+RTGR++G +   QNLP+        
Sbjct: 295 RQDLAKSSVKKYTAMENAVCSDGRVRGLLQFYGANRTGRFAGRLIQVQNLPQNHLPDLVQ 354

Query: 340 DQIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            + +                  ++S+ +R+  +   G K +VAD + IEARV+AW+AGEQ
Sbjct: 355 ARQLVKSGDFDALEILYDSVPGVLSELIRTAFVPMPGYKFIVADFSAIEARVIAWLAGEQ 414

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAST 454
           W+ + F +   +Y  + ++ F V   ++TK    R  GK+ ELALGY G   A + M   
Sbjct: 415 WRNEVFASHGKIYEASASQMFRVPIEEITKGSPLRQKGKIAELALGYGGSVGALKAMG-- 472

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                                 A++        + +  AWR  +
Sbjct: 473 --------------------------------------ALDMGLAEDELQPLVTAWRAAN 494

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RD 572
             ++ LW ++ +A +  +    A           +  +     L + LPSGR L Y    
Sbjct: 495 PNITRLWWDVDRAAKTAVREKTAEQT------HNILFEYRSGFLFITLPSGRKLAYVKPR 548

Query: 573 VGNNRSYLNT-------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
           +  NR   ++        +++  R  +YG K  ENIVQA+SRDIL   M   +  G+ IV
Sbjct: 549 IEANRFGSDSITYEGVGASKKWERIESYGPKFVENIVQAISRDILCYAMQRLSSMGFSIV 608

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + +HDE+V ET  + + +  ++  +M+  P WA+GL L A+G+E + Y+K
Sbjct: 609 MHIHDEVVIET--SCDVSPEIVCRIMSETPPWAEGLFLCADGFECQFYKK 656


>gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
 gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516]
          Length = 643

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/697 (32%), Positives = 334/697 (47%), Gaps = 77/697 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DL K G+ KYAE  D  ++LFA+  +D  V++ D  +  ++P+ + 
Sbjct: 1   MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSINDGEVKVIDLANGEIIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL + +V   A N+ FER  L       +    W CT++ +   GLP +L+ VGE LKL
Sbjct: 61  SALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QKM EGK LI  F   CK      +  RN  +H  E W  F EY + DV     I K+
Sbjct: 121 DKQKMNEGKALIRYFSTPCKPTKTNGMRIRNLSHHDLEKWSTFKEYNQRDVETEMAIKKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+S  E E +++DQ INDRG  +D  L  +  +   + R +       LT   + +
Sbjct: 181 LSAFPMSHSEWENYWIDQNINDRGILIDEVLVDSAIKFDGILREENMDRAIELTG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + GL ++ L +   + V S+ K       +V   R   S+S+V K +
Sbjct: 239 PNSPLQLKEWLNKK-GLEIDSLAK---KDVESALKNTEGDIKEVLELRQELSKSSVRKYD 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349
            +      D R RG +QF GA+RTGR+SG +   QNL R +    +L + +       T 
Sbjct: 295 AMKNVKGKDNRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYETM 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                 P  I+S  +R+  IA EG + +++D + IEARVLAW+AGEQW L AFE GED+Y
Sbjct: 355 EILYESPSDILSQLIRTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDAFENGEDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             T +R F V   +       R  GK+  LA GYQG   A + M                
Sbjct: 415 CRTASRMFGVPVEKHGVNGHLRQKGKIATLACGYQGALGALKAMG--------------- 459

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                     IE        + +  +WR+ +  +  LW ++   
Sbjct: 460 -------------------------GIEMGLSEDELQSIVDSWREANPNIVSLWWDIDSV 494

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNRSYLNTT-- 583
            ++ ++         +     + +  +K  L + LPS R L Y    +G NR    +   
Sbjct: 495 VKRVVKTRT------KEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTNRFGGESIVY 548

Query: 584 -----TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                  +  +  +YGGK  ENIVQA++RDILAE MM   K G++IV+ +HDE+V E   
Sbjct: 549 EGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE--- 605

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +D  +   +  +M+  PSWA GL L A+G+ES+ Y+K
Sbjct: 606 SDSSSIEEINQIMSLVPSWAPGLILDADGFESEFYKK 642


>gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
 gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756]
          Length = 644

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 206/697 (29%), Positives = 320/697 (45%), Gaps = 76/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L  CG+ +YA  E   ++LFA+  +D P ++ D      MP+ + 
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTKIIDIASGQTMPEEIM 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V   A N+ FER  +   F L +    W CT V A    LP +L+ VGEAL L
Sbjct: 61  ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174
             +KM EGK+LI  F   CK         RN P +  E W LF  YC  DV V ++I  +
Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIRNK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+  +EQEL+ +DQ INDRG  VD  L         + +    +    ++   + +
Sbjct: 181 LAKFPIPDREQELYCMDQRINDRGIMVDRELISNAVACDLLYKEAASKRAYEISG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  + G+ ++ L +   + ++        +  ++   R+  S+++V K  
Sbjct: 239 PNSVSQLKDWLNEK-GIEVDSLAKAAVEELVEK---TEGEVSEMMKLRLSMSKTSVKKYE 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349
            +  ++  DGR+ G LQF GA+RTGRW+G +    NLP+      EL + I         
Sbjct: 295 AMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDLV 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                   +++S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F     +Y
Sbjct: 355 ELLYDSTPEVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKIY 414

Query: 410 VTTYARSFNVAPAQVTKDQRAIG--KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             T ++ F++   ++TK        KV  LA  Y G   A   M +   +          
Sbjct: 415 EQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEE------- 467

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                               + + ++WR  +  +   W E+  A
Sbjct: 468 ----------------------------------ELKGLVQSWRTANPHIVNYWYEIDGA 493

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NNRSY 579
            +  ++  K     +      V +      L + LPSGR L Y             + SY
Sbjct: 494 VKAAVKERKMTTVGR------VTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVSY 547

Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
               T R+ TR  +YG K  ENIVQA +RD+LAE M+   K G+DIV  +HDE+V E P+
Sbjct: 548 EGVGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLEVPE 607

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +   +  +M   P W +GLPLKA G+ES  Y+K
Sbjct: 608 GT-SSVEEVNEIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4]
 gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Lactobacillus gasseri ATCC 33323]
 gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4]
          Length = 644

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 208/697 (29%), Positives = 321/697 (46%), Gaps = 76/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +PQ + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIPQPIV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L       +    W C+ V + + GLP +L  VG  L L
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           LE       E E +++DQ INDRG  +D  L +   +  +    +  Q  + LT     +
Sbjct: 181 LERFPVSQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQENFHDQYLQVSQKLTGLA--N 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL    G++++ L++ +  ++L +    T +  QV + R   S+S+V K  
Sbjct: 239 PNSPLQLKDWLNQR-GMNIDSLSKASVAQLLQT---TTGKVHQVLSLRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TS 349
            + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    E  + +         
Sbjct: 295 AMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNTTAL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  +R+  I S+G    VAD + +EARV+AW++GE+W+ KAF   ED+Y
Sbjct: 355 SMLYDSVPDVLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEWRQKAFANNEDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + ++ F V   +     + R  GK+ ELALGY G   A + M +T             
Sbjct: 415 CASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMGAT------------- 461

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                                 + + WR     + + W ++ +A
Sbjct: 462 ---------------------------NLGLTEEELHSLVQMWRNASPHIVQFWWDIDKA 494

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT- 584
            ++ I++              +        + L L SGR L Y    +G NR    + T 
Sbjct: 495 AKECIKSHLPQATHG------IKFIYRSGCMFLRLRSGRKLCYSKPKIGINRFGSESITF 548

Query: 585 ------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                 ++  R  TYG KL ENIVQA SRD+LAE M     AG  +V+ +HDE V + P 
Sbjct: 549 MGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGNPVVMHIHDEAVIDAP- 607

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              ++   +  +MT  P WA GL L A G+ S  Y+K
Sbjct: 608 -ANYSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKK 643


>gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [butyrate-producing bacterium SM4/1]
          Length = 646

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 206/702 (29%), Positives = 308/702 (43%), Gaps = 84/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S   L K G+ +Y E  D  ++LFA+  D  PV+  D      +P  + 
Sbjct: 1   MQTLSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIPSEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALE+  VT  A N+ FER  L           +    W C++V A   GLP +L+  G 
Sbjct: 61  CALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGAGA 120

Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  FC+            RN P H  + W  F +Y   DV     
Sbjct: 121 VLGLEKQKLAEGKDLIKYFCQPCAPTKSNGQRTRNLPKHSPDKWLAFKKYNIRDVETEMS 180

Query: 171 IFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I  R    P+     E ++LDQ INDRG  +D+ L     Q+    R++L Q ++ LT  
Sbjct: 181 IQARLLKYPVPDSVWEEYHLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQAMKELT-- 238

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL  + G+  + L +     +L +      Q  +V   R + ++S+V
Sbjct: 239 SLDNPNSVQQMKQWL-ADNGVETDTLGKKAVAELLKT---APQQLQKVLTLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH--- 345
            K   +  A+ +DGR RG  QF GA+RTGRW+G +   QNLP+         + +     
Sbjct: 295 KKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHLDDLTEARGLVRAGG 354

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                    D    +S  +R+  +    +K +VAD + IEARV+AW+A E+W+   F  G
Sbjct: 355 FDALEMLYEDVPDTLSQLIRTAFVPQGNRKFIVADFSAIEARVIAWLADEKWRQDVFAEG 414

Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462
           +D+Y  + ++ F V   +       R  GK+ ELALGY G   A + M +   GL+ +  
Sbjct: 415 KDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLSEDEL 474

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                                      +  AWRQ + ++ + W 
Sbjct: 475 PA-----------------------------------------LVSAWRQANPKIVQFWW 493

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYL 580
            + +A    +                +        L + LPSGRSL Y    +G NR   
Sbjct: 494 AVDRAVMDAVTRKTTTKTHG------IIFSARNGMLFITLPSGRSLSYVKPKIGENRFGG 547

Query: 581 N-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           +         T++  R  +YG K  ENIVQA SRDIL   M         IV+ +HDE+V
Sbjct: 548 DCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAMKTL--RCCSIVMHIHDEVV 605

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E       +   +   M   P WA GL L+A+GYE+  Y+K
Sbjct: 606 IEA--DRRMSLQAVCDQMGRTPPWANGLQLRADGYETDFYKK 645


>gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 646

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 203/701 (28%), Positives = 308/701 (43%), Gaps = 82/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L+K G+ +Y E  D  +ILF +  D   V++ D      +P+ + 
Sbjct: 1   MKNLEIDIETYSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIPKEVY 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
           +ALE+  VT  A N+ FER  L           +    W C++V +   GLP +L+ VG 
Sbjct: 61  DALEDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLPLSLEGVGV 120

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            L L  QK+ EGKELI  F   C          RN P+H  E W  F  Y   DV    +
Sbjct: 121 VLGLEKQKLTEGKELIKYFCTPCNPTKVNGGRMRNLPHHDTEKWERFKAYNIRDVEAEMQ 180

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I  RL+  P+     + ++LDQ INDRG  VD+       +I +V R  L  +++ LT  
Sbjct: 181 IQSRLQKFPVPDFVWDEYHLDQEINDRGIKVDMDFVEKCLEIDNVSRESLMTKMQVLTSL 240

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              +   + ++K WL    G+  E L +     ++    ++  +  ++   R + ++S+V
Sbjct: 241 T--NPNSVVQMKGWLSD-NGIETETLGKKAVAALI---DEVPDEMSEILALRQKLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            K   +  ++  DGR+RG  QF GA+RTGR++G +   QNLP+         + +     
Sbjct: 295 RKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNLPQNHMEDLAEARGLVRSGD 354

Query: 349 ---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                    D    +S  +R+  I +  +  +VAD + IEARV+AW AGE W+   F  G
Sbjct: 355 YDSLDLLYDDIPDTLSQLIRTAFIPTVNESFIVADFSAIEARVIAWFAGESWRADVFAKG 414

Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ F V   +       R  GK+ ELALGY G   A + M            
Sbjct: 415 GDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGALKAMG----------- 463

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                        A+E          +  AWR  +  +   W +
Sbjct: 464 -----------------------------ALEMGLAEEELPELVSAWRCSNPNIVRFWWD 494

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GN 575
           +  A ++ I++  +           V+       L + LPSGR L Y           G 
Sbjct: 495 VDSAVKKAIKSKTSTATHG------VHFSCRSGMLFITLPSGRVLSYVKPCMGENKFGGE 548

Query: 576 NRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           + +Y    +T++  R  +YG K  ENIVQA SRDIL   M         IV  VHDEI+ 
Sbjct: 549 SVTYEGVGSTKKWERLESYGPKFVENIVQATSRDILMYAMKTL--RCCSIVAHVHDEIII 606

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E       +   +   M   P WA+GL L+A+GYE + Y+K
Sbjct: 607 EA--DPRMSLDAICEQMGRTPPWAEGLLLRADGYECQFYKK 645


>gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes
           195]
 gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes
           195]
          Length = 646

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 200/702 (28%), Positives = 309/702 (44%), Gaps = 84/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M +L ID ET S  +L K G+ +Y E  D  ++LF +  D   V++ D      +P  + 
Sbjct: 1   MKSLSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLPSDVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            AL +  V   A N+ FER  L     L     I    W C++V A + GLP +L+ VG 
Sbjct: 61  TALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGVGS 120

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRN-KPNHREAWRLFGEYCKGDVTVTRE 170
            LKL  QK+ EGK+LI  F   C          RN   +  + W  F +Y   D+     
Sbjct: 121 VLKLDKQKLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETEMS 180

Query: 171 IFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I ++    P+     + ++LDQ INDRG  +D+ L      +    R++L   ++ LT  
Sbjct: 181 IQEKLTRFPVQDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTTAMKHLT-- 238

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL  + G+  + L +     +L +          V + R + ++S+V
Sbjct: 239 ELDNPNSVQQMKQWL-ADNGMETDTLGKKIVAELLKTAPLD---LADVLSLRQQLAKSSV 294

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---H 345
            K   +  A+ +DGR RG  QF GA+RTGRW+G +   QNLP+         + +     
Sbjct: 295 RKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQNHLEDLAEARALVRFGD 354

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                    D    +S  +R+  +   G +L+V+D + IEARV+AWMAGE+W+   F  G
Sbjct: 355 FDALEMLYEDVPDTLSQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQDVFAKG 414

Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTF 462
            D+Y  + ++ F V   +       R  GK+ ELALGY G   A + M +   GL  +  
Sbjct: 415 GDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLEEDEL 474

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                                      +  AWRQ +  + + W 
Sbjct: 475 PQ-----------------------------------------LVDAWRQANPCIVKFWW 493

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYL 580
           ++ +A  +       +  ++      +        L + LPSGR L Y    +G N+   
Sbjct: 494 DVDKAAMEA------VRYKRTNSTHGITFSCQSGMLFITLPSGRRLAYVKPRIGENKFGG 547

Query: 581 N-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                     T++  R  +YG K  ENIVQA +RDIL   M         IV+ VHDEIV
Sbjct: 548 QCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQTLQH--CSIVMHVHDEIV 605

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E       +   +   M   PSWAKGL L+A+GYE+  Y+K
Sbjct: 606 IEA--DPRMSLKAVCEQMGRTPSWAKGLLLRADGYETDFYKK 645


>gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
 gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149]
          Length = 644

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 205/697 (29%), Positives = 322/697 (46%), Gaps = 76/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L  CG+ +YA  E   ++LFA+  +D P ++ D      +P  + 
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTQIIDLASGEKIPDEIM 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V   A+N+ FER  +   F L +    W CTLV A    LP +L+ VGEAL L
Sbjct: 61  EYLTDDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQASMLSLPLSLEGVGEALNL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174
             +KM EGK+LI  F   CK         RN P +  E W LF  YC  DV V ++I  +
Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCTRDVDVEKQIRNK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+  +EQ+L+ +DQ INDRG  VD  L         + +  + ++   ++   + +
Sbjct: 181 LAKFPIPDREQKLYCMDQRINDRGIMVDQELIGHAVACDLLYKETVTKKAYEISG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  + G+ ++ L +   + ++           ++   R+  S+++V K  
Sbjct: 239 PNSVSQLKDWLNEK-GIEVDSLAKAAVEELVE---NTQGDVAEMMKLRLAMSKTSVKKYE 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349
            +  ++  DGR+ G LQF GA+RTGRW+G +    NLP+      EL + +         
Sbjct: 295 AMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSLVKEGRYDLV 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F     +Y
Sbjct: 355 ELLYDSTPDVLSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKIY 414

Query: 410 VTTYARSFNVAPAQVTKDQRAIG--KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             T ++ F++   ++TK        KV  LA  Y G   A   M +   +          
Sbjct: 415 EQTASKMFHIPIGEITKGSPYRARGKVASLACQYGGAEGALISMGALNFVEEE------- 467

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                               + + ++WR  +  +   W E+  A
Sbjct: 468 ----------------------------------ELKGLVQSWRTANPHIVNYWYEIDGA 493

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NNRSY 579
            +  ++  K         V +V +      L + LPSGR L Y             + SY
Sbjct: 494 VKAAVKERKMT------KVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNRFGSESVSY 547

Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
               T R+ TR  +YG K  ENIVQA +RD+LAE M+   K G+DIV  +HDE+V E P+
Sbjct: 548 EGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLEVPE 607

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +   +  +M   P W +GLPLKA G+ES  Y+K
Sbjct: 608 GT-SSVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 212/715 (29%), Positives = 314/715 (43%), Gaps = 96/715 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL KCG+ KY E  D  ++LF +  D  PV++ D      +PQ + 
Sbjct: 1   MKTLSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIPQEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACF------------------NLDIPIHRWICTLVLA 100
            AL N +VT  A N+ FER  L                         +    W CT++ +
Sbjct: 61  AALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMIWS 120

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPN-HREAWRL 156
              GLP +L+ VG  L L  QK+ EGKELI  FC+            RN P    + W  
Sbjct: 121 AYMGLPLSLEGVGAVLGLGKQKLTEGKELIKYFCQPCAPTKANSGRTRNLPENAPDKWAS 180

Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           F  Y   DV V   I ++L   P+     E ++LDQ INDRG  +D+ L      +    
Sbjct: 181 FKRYNARDVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDLVRQAIDMDTRS 240

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
           R +L   ++ LT   + +   ++++K WL    GL+++ L +   + V    K    +  
Sbjct: 241 RAELTAAMKKLTA--LDNPNSVQQMKQWLSD-NGLNVDSLGK---KEVAEMLKTAPAELQ 294

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           QV   R + ++S+V K   + +A+ +DGR RG  QF GA+RTGRW+G +   QNLP+   
Sbjct: 295 QVLLLRQQLAKSSVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHL 354

Query: 335 SHEELDQIIT---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                 + +              D    +S  +R+  +   G K +V+D + IEARVLAW
Sbjct: 355 PDLAEARALVRCGDFDGVELLYEDVPDTLSQLIRTAFVPRPGYKFIVSDFSAIEARVLAW 414

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQ 449
            AGE W+ + FE G D+Y  + ++ F V   +       R  GK+ ELALGY G   A +
Sbjct: 415 FAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALK 474

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            M                                         A+E        + +  A
Sbjct: 475 AMG----------------------------------------ALEMGLSEGELQPLVTA 494

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           WR  +  + + W ++ +A    ++           ++  +        L + LPSGR L 
Sbjct: 495 WRNSNQNIVKFWWDIDRAAMNAVK------YHMDSEICGIKFSYKSGMLFITLPSGRRLS 548

Query: 570 Y--RDVGNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
           Y    +G N+             T++  R  TYG KL ENIVQA SRDIL   M   +  
Sbjct: 549 YVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLVENIVQATSRDILCYAMRTLSH- 607

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              I + +HDE+V E       N   +   M   P+WA GL L+A+GYE+  Y+K
Sbjct: 608 -CFITMHIHDELVIEASLG--VNLKSICEQMGRTPTWANGLKLRADGYETMFYKK 659


>gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
 gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704]
          Length = 662

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 205/717 (28%), Positives = 310/717 (43%), Gaps = 98/717 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S I+L+KCG+ KYAE  D  ++LF +  D   V++ D      +PQ L 
Sbjct: 1   MQTLSIDIETYSSINLSKCGVYKYAEAPDFEILLFGYSVDGCDVKVIDLAQGEHLPQELI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKAC---FNLDIPI-----------------HRWICTLV 98
           +AL +  +   A N+ FER  L        + +                     W C++V
Sbjct: 61  DALTDDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLSQECSHFLNSESWRCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154
            A + GLP +L+ VG  L L  QK+ EGKELI  F   C          RN+P H  E W
Sbjct: 121 WAATMGLPLSLEGVGSVLGLEKQKLTEGKELIKYFSVPCAPTKANGGRTRNRPFHDPEKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             F  Y   DV     I  RL   P+       +++DQ INDRG  +D+ L     ++  
Sbjct: 181 DAFKRYNIRDVETEMGIKDRLSKFPVPEAVWYEYHIDQEINDRGVRIDMDLVTEAIEMDT 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             RT+L   ++ +T   + +   ++++K WL    GL  + L +     ++ +     P+
Sbjct: 241 RSRTELTSAIKKMTD--LENPNSVQQMKQWLSN-NGLETDSLGKKVVAELIKT---APPE 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R + ++S+V K  T+  A+  DGR RG   F GA+RTGRW+G +   QNLP+ 
Sbjct: 295 LQNVLELRQQLAKSSVRKYQTMERAVCDDGRARGMFAFYGANRTGRWAGRLIQLQNLPQN 354

Query: 333 SRSHEELDQIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                   + +              D    +S  +R+  I     +  V+D + IEARV+
Sbjct: 355 HLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKSDTQFYVSDFSAIEARVI 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKA 447
           AW AGE W+ K F  G D+Y  + ++ F+V   +       R  GK+ ELALGY G   A
Sbjct: 415 AWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSIGA 474

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            + M +                                         E          + 
Sbjct: 475 LKAMGAI----------------------------------------EMGLSEDELPPLV 494

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            AWRQ +  + + W ++ +A  + +++              +        L + LPSGR+
Sbjct: 495 DAWRQTNPNIVKFWWDVDRAVMEAVKHKHTTS------CYGLTFSCRSGMLFITLPSGRN 548

Query: 568 LVY--RDVGNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
           L Y    +G N+            +T++  R  +YG K  ENIVQA SRDIL   M    
Sbjct: 549 LAYVKPKIGTNKFGGECITYEGVGSTKKWERLDSYGPKFVENIVQATSRDILCYAMKTL- 607

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +IV+ +HDE+V E       +  +L   M   P WA+GL L+A+GY    Y+K
Sbjct: 608 -RNCEIVMHIHDELVIEA--DPCMSLDVLCEQMGRTPPWARGLKLRADGYTCPFYKK 661


>gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           DSM 7]
          Length = 648

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/699 (32%), Positives = 329/699 (47%), Gaps = 76/699 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL KCG+  Y E  D  ++LFA+ FD+ P+++ D      +P  + 
Sbjct: 1   MKTLSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALPHEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL ++ V   A+N+ FERT +   FN  +P  +W CT V A + GLP  L  V +ALKL
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
           S QK +EGK LI  F   CK         RN P H  + W  F  YC  DV V R I  R
Sbjct: 121 SEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVEVERSIKNR 180

Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +        EQELW LDQ INDRG  +D  L        +  +  L  E + LT     +
Sbjct: 181 ISKFEPLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTGLP--N 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + GL +  L +   + ++      +    +V   R   ++++V K  
Sbjct: 239 PNSTAQLKKWLEDK-GLSVSSLAKDKIEELIEKTDDAS--VHRVLRLRQEMAKTSVKKYL 295

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349
            + +A+  D R+RG LQF GASRTGRW+G +   QNLP+   +  +  + +    H    
Sbjct: 296 AMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEAI 355

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  VR+  I SEG +  V+D + IEARV+AW+AGE W+L  F T   +Y
Sbjct: 356 ELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKIY 415

Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + A+ F V    +TK    R  GKV ELALGYQGG  A  +M + T GL+ +      
Sbjct: 416 EASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELP--- 472

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                  + KAWR  + ++ + W ++  
Sbjct: 473 --------------------------------------GLVKAWRTANKKIVQFWYDVEA 494

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR--------- 577
           A  + ++  K +     +    +    +   L + LPSGR L Y                
Sbjct: 495 AAVKAVKERKPV-----KIQHGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549

Query: 578 SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           +Y     + +  R  TYGGKL ENIVQAV+RD LA  ++    AGY  V+ VHDE V + 
Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDETVLDV 609

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P   +     +  +M     WAKGLPL A+G+ +  Y+K
Sbjct: 610 PRG-KNELDKVESIMGEPIPWAKGLPLTADGFITDYYKK 647


>gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase
 gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2]
 gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2]
          Length = 648

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/698 (32%), Positives = 325/698 (46%), Gaps = 74/698 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL K G+  Y E  D  ++LFA+ FDD PV++ D      +P  + 
Sbjct: 1   MKTLSIDIETFSSVDLLKAGVYAYTEAPDFEILLFAYAFDDDPVKIIDLAQGDTLPHEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL ++ V   A+N+ FERT +   FNL +   +W CT V A + GLP  L  V +ALKL
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
           S+QK + GK LI  F   CK         RN P H  E W  F  YC  DV V R I  R
Sbjct: 121 SAQKDKAGKALIRYFSVPCKPTKANGQRVRNLPEHDPEKWEKFKVYCIQDVEVERAIKNR 180

Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +        E +LW LDQ INDRG  +DV L        +  +  L  E + LT     +
Sbjct: 181 ISKFEPLESEHKLWALDQEINDRGVRIDVDLVKHAIACDEQYQAGLIAEAKKLTGLP--N 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + GL +  L +   + ++ +         +V   R   ++++V K  
Sbjct: 239 PNSTAQLKKWLEEK-GLTISSLAKDKIEELIEN--TNDETVHRVLRLRQEMAKTSVKKYL 295

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349
            + +A+  D R+RG LQF GASRTGRW+G +   QNLP+      +  + +    H    
Sbjct: 296 AMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIEDLDTARNLLKGGHYEAI 355

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  VR+  I SEG +  V+D + IEARV+AW+AGE+W+L+ F T   +Y
Sbjct: 356 ELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHGKIY 415

Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + A+ F V    +TK    R  GKV ELALGYQGG  A  +M                
Sbjct: 416 EASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG--------------- 460

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+           + KAWR  + ++ + W ++  A
Sbjct: 461 -------------------------ALNMGLAEGELPELVKAWRTANKKIVKFWYDVEAA 495

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---------GNNRS 578
             + ++  K +  +       +    +   L + LPSGR L Y                +
Sbjct: 496 AIKAVKERKPVKLQ-----HGLTFLYESGILFVQLPSGRRLAYAKPKLELDERFGKEALT 550

Query: 579 YLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
           Y     + +  R  TYGGKL ENIVQA +RD LA  +M    AGY  V+ VHDE V + P
Sbjct: 551 YEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNAGYKTVMHVHDEAVLDVP 610

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              +     +  +M    SWAKGLPL A+G+ +  Y+K
Sbjct: 611 RG-KNELDKVEAIMGEPISWAKGLPLTADGFVTDYYKK 647


>gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 663

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 206/713 (28%), Positives = 317/713 (44%), Gaps = 96/713 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           TL ID ET S IDL KCG+ KY+E  D  V+LFA+  D   V + D  +   +P  + +A
Sbjct: 6   TLSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIPDEILQA 65

Query: 61  LENTDVTIVAHNSYFERT----VLKACF--------------NLDIPIHRWICTLVLARS 102
           L +  V   A N+ FER      LK  +                 +    W C+++ +  
Sbjct: 66  LVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMIWSAY 125

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFG 158
            GLP +L+ VG  L L  QK++EGK+LI  FCK            RN P H  + W LF 
Sbjct: 126 MGLPLSLEGVGAVLGLEEQKLKEGKDLIRYFCKPCAATKVNGGRTRNLPEHAPDKWELFK 185

Query: 159 EYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            Y K DV V   I K+    P+     E ++LDQ INDRG  +D+ +     +I  + + 
Sbjct: 186 AYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEINDRGIALDMDVVENAIRIDAISKA 245

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            L   ++ LT   + +   + ++K WL  + G+  + L +   + V+   K +      V
Sbjct: 246 TLMATMQDLTD--LENPNSVAQMKGWLAAK-GVDTDSLDK---KAVIELLKTVPTDVADV 299

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R + ++S+V K   +  A+  DGR RG  QF GA+R+GRW+G +   QNLP+     
Sbjct: 300 LTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQNLPQNHMED 359

Query: 337 EELDQIITHLPTSI---TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            ++ + I              +   ++S+ +R+  I  EG K  VAD + IEARV+A +A
Sbjct: 360 LDVARDIVKSGDYEILNMFYDNVPGVLSELIRTAFIPREGYKFAVADFSAIEARVIAHLA 419

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKM 451
            E+W++K F    D+Y  + +  F V   +       R  GK+ ELALGY G   A   M
Sbjct: 420 KERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGKIAELALGYGGSVGALTSM 479

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                                                    A++        + +  AWR
Sbjct: 480 G----------------------------------------ALDMGLAEEELQPLVDAWR 499

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570
             +  + + W ++  A ++ I+   A      R             L ++LPSGR L Y 
Sbjct: 500 AANPNIVQFWWDVDNAVKRAIKERTATKTHGIR------FIYKSAMLFIVLPSGRRLAYV 553

Query: 571 -RDVGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              +G N+    + T       ++  R  +YG K  ENIVQA+SRDIL   +   +    
Sbjct: 554 KPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENIVQAISRDILCYALRTLSH--C 611

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IV  VHDE++ E       +   +   M   P W +GL L+A+GYE++ Y+K
Sbjct: 612 FIVGHVHDEVIIECRQDA--SLEAICEQMGRVPEWIEGLLLRADGYETQFYKK 662


>gi|332800352|ref|YP_004461851.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1]
 gi|332698087|gb|AEE92544.1| DNA-directed DNA polymerase [Tepidanaerobacter sp. Re1]
          Length = 652

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 223/702 (31%), Positives = 331/702 (47%), Gaps = 78/702 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DLTKCG+  Y  AED  ++LF + F++ PVE+ D      +P  + 
Sbjct: 1   MTILSIDIETYSSVDLTKCGVYAYTQAEDFEILLFGYAFNNDPVEVIDLASGEQIPDEVT 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            A+ ++ V   A N+ FERT L    N  +P   W C+   A + GLP  L  V + L L
Sbjct: 61  NAITDSAVIKTAFNANFERTCLAKYLNKPMPPEEWRCSQAHALTLGLPLNLAGVAKCLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
           + QKM EGK LI  F   CK         RN P+H  E W  F  YCK DV V R I KR
Sbjct: 121 ADQKMSEGKALIRYFSIPCKPTKANGGRTRNLPHHDREKWETFKAYCKQDVVVERSIRKR 180

Query: 175 L--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P++ KE +LW LDQ IND G  VD  L         + + +L  E   LT   + +
Sbjct: 181 LENYPMTDKELKLWSLDQKINDYGVRVDRQLVENAICCDGIHQKELMAEAIDLTG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LKTWL     + ++ L++   + +L+      P   +V   R   S+++V K  
Sbjct: 239 PNSPAQLKTWLKGNHNIQVDSLSKANVEELLNKI--NHPTVTRVLELRQDMSKTSVRKYE 296

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349
            +  AM  DGR+RG LQ+ GA+RTGRW+G +   QNLPR +    +L + +       + 
Sbjct: 297 AMDRAMGGDGRIRGLLQYYGANRTGRWAGRLVQVQNLPRNNMKDLDLARKLLLAGDYESL 356

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  +R+  + S G + +++D + IEARV+AW+AGE+W +  F+    +Y
Sbjct: 357 ELLFDSVPDVLSQLIRTAFVPSPGHRFIISDFSAIEARVIAWLAGEKWVVDTFKGHGKIY 416

Query: 410 VTTYARSFNVAPA-----QVTKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFA 463
             T ++ F V            + R  GKV  LA GYQG   A + M +   GL  +   
Sbjct: 417 EMTASKMFGVPMELIVKGNPEYELRQKGKVAVLACGYQGSVGALKAMGALNMGLKEDELP 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                                     +  AWR+ +  + +LW +
Sbjct: 477 A-----------------------------------------IVAAWRESNPNIVKLWWD 495

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           +  A  + +++  +I  +       +        L + LPSGR+L Y             
Sbjct: 496 VEDAAIRAVKDRTSITMQYG-----LKFYYKSGVLFIRLPSGRNLAYVKPRIELDTRFNK 550

Query: 584 TR----------QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            +          +  R  TYGGKLTENI+QA++RD LAE ++   KAGY I   VHDE+V
Sbjct: 551 DKLTYEGIMLGNKWARIDTYGGKLTENIIQAIARDCLAESLLRLDKAGYKIAFHVHDEVV 610

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            + P     +   +  +M+ + +WAKGLPL+AEG+E+  Y K
Sbjct: 611 LDVPQGF-GSLKEVEEIMSQDINWAKGLPLRAEGFETNYYMK 651


>gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens
           LL3]
          Length = 648

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/699 (33%), Positives = 330/699 (47%), Gaps = 76/699 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL KCG+  Y E  D  ++LFA+ FD+ P+++ D      +P  + 
Sbjct: 1   MKTLSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL ++ V   A+N+ FERT +   FN  +P  +W CT V A + GLP  L  V +ALKL
Sbjct: 61  VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
           S QK +EGK LI  F   CK         RN P H  + W  F  YC  DV V R I  R
Sbjct: 121 SEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVEVERSIKNR 180

Query: 175 LEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +        EQELW LDQ INDRG  +D  L        +  +  L  E + LT     +
Sbjct: 181 ISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTGLP--N 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LKTWL  + GL +  L +   + ++      +    +V   R   ++++V K  
Sbjct: 239 PNSTAQLKTWLEDK-GLSVSSLAKDKIEELIEKTDDAS--VHRVLRLRQEMAKTSVKKYL 295

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTS 349
            + +A+  D R+RG LQF GASRTGRW+G +   QNLP+   +  +  + +    H    
Sbjct: 296 AMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEAI 355

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  VR+  I SEG +  V+D + IEARV+AW+AGE W+L  F T   +Y
Sbjct: 356 ELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKIY 415

Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + A+ F V    +TK    R  GKV ELALGYQGG  A  +M + T GL+ +      
Sbjct: 416 EASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELP--- 472

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                  + KAWR  + ++ + W ++  
Sbjct: 473 --------------------------------------GLVKAWRTANKKIVQFWYDVEA 494

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR--------- 577
           A  + ++  K +     +    +    +   L + LPSGR L Y                
Sbjct: 495 AAVKAVKERKPV-----KIQHGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549

Query: 578 SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           +Y     + +  R  TYGGKL ENIVQAV+RD LA  ++    AGY  V+ VHDE V + 
Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDEAVLDV 609

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P   +     +  +M     WAKGLPL A+G+ +  Y+K
Sbjct: 610 PRG-KNELDKVEAIMGEPIPWAKGLPLTADGFITDYYKK 647


>gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
 gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 645

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 215/697 (30%), Positives = 337/697 (48%), Gaps = 75/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DL K G+  Y    +  ++LFA+ FD   V++ D      +P  + 
Sbjct: 1   MQTLSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELPAEII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL N ++   A N+ FER  L    N  +  + W CT V A + G P +L  V + L L
Sbjct: 61  EALLNENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
           + QKM+EGKELI  F   CK         RN P H  E W  F +YC  DV V R I K+
Sbjct: 121 TEQKMKEGKELIRYFSIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVEVERAIRKK 180

Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+S  EQ  + LD  INDRG  VD+ L     +   + +     E + LT   + +
Sbjct: 181 LSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECDRLHKEDTFTEAQRLTG--LDN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL +E G+ ++ L++     +    K+   +  ++ N R++ +++++ K  
Sbjct: 239 PNSVAQLKQWL-IENGVEVDSLSKKAVSDL---AKEADGEVERLLNLRLQLAKTSIKKYE 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349
            +  A+  D R+RG LQF GA+RTGRW+G +   QNLP+       L + +         
Sbjct: 295 AIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLKDLTLARNLVKSGDFDTL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S+ +R+  I     + +VAD + IEARV+AW+AGE+W++  F T   +Y
Sbjct: 355 ALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGEKWRMDVFATHGKIY 414

Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + ++ F V   ++TK    R  GK+ ELALGY G   A   M                
Sbjct: 415 EASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMG--------------- 459

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A++        + +  AWRQ +  +++LW ++ +A
Sbjct: 460 -------------------------ALDMGVAEDELQGLVTAWRQANPNITKLWWDIDKA 494

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN--------RSY 579
             + ++    ++  K      + ++ +   + + LPSGR L Y               +Y
Sbjct: 495 AIKAVKKKTTVMVGK------IKLQYESGIMFITLPSGRRLSYIKPRIEPNKFERDAVTY 548

Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                T++  R  TYG KL ENIVQA++RD+LAE M+   + GY+IV+ +HDEIV E P 
Sbjct: 549 EGIGATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEIVMHIHDEIVIEAPL 608

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +   +  +M   P+WA+ LPL+A+G+E + YRK
Sbjct: 609 NF-GSLKDVCEVMAIAPTWAESLPLRADGFECEYYRK 644


>gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 204/697 (29%), Positives = 309/697 (44%), Gaps = 76/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L + G  +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L       +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+   E E +++DQ INDRG  +D  L +   +       +  Q  + LT     +
Sbjct: 181 FSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTGLA--N 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + G+  + L + +  ++L +    T    QV   R   S+S+V K  
Sbjct: 239 PNSPLQLKNWLHQQ-GVETDSLAKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TS 349
            + +AM  DG + G LQF GA+RTGRW+G +   QNLPR S    E  + +         
Sbjct: 295 AMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTAL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  +R+  I S+G    VAD + +EARV+AW++GE+W+  AF   ED+Y
Sbjct: 355 AMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + ++ F V   +     + R  GK+ ELALGY G   A + M +T             
Sbjct: 415 CASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK------------ 462

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                                 + + WR     + + W ++ +A
Sbjct: 463 ----------------------------LGLTDDELPPLVQMWRNASPHIVQFWWDVDKA 494

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR-------S 578
            ++ I+          +             + L L SGR L Y    +G NR        
Sbjct: 495 AKECIKTHLPQTTHGMK------FIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESITF 548

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
             N T ++  R  TYG KL ENIVQA SRD+LA  M     AG  +V+ +HDE V + P 
Sbjct: 549 MGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPT 608

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +   +  +MT  P WA GL L A G+    Y+K
Sbjct: 609 D--RSLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643


>gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 651

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/695 (33%), Positives = 323/695 (46%), Gaps = 73/695 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S   L   G+ +YA D    ++LFA+  D   V++ D      +P  + 
Sbjct: 9   MRTLSIDIETFSKASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARGEQIPGDVL 68

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +ALE+  V   A N+ FER  L A     +    W C++V A   G+P  L  V +AL L
Sbjct: 69  DALEDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVPLDLAGVAKALHL 128

Query: 119 SSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREI--F 172
            ++KM EGK LI  F    K        +RN P H  + W  F  YCK DV V   I   
Sbjct: 129 ETEKMGEGKNLIRYFSLPAKPTKANGGRERNLPEHAPDDWETFKAYCKRDVEVELAITKR 188

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+ ++E + ++ DQ INDRG  +D  LA       +  R    + +  LT   V +
Sbjct: 189 LHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTGRASALERMRELT--RVDN 246

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +L  WL  + GL ++ L +      L    +      +V   R   ++S+V K  
Sbjct: 247 PASVTQLLAWLRSQ-GLQIDSLAKADVAAALEGALE--GDVAEVLALRQEMAKSSVKKYE 303

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPTS 349
            ++     DGR  G LQF+GA RTGRW+G +   QNLPR S S  E    +    H    
Sbjct: 304 RMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPRQSISDLEAAADLVRTGHADML 363

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            T      Q++S+ +R+  +A  G + +VAD + IEAR +AW+AGEQW L  FE G D+Y
Sbjct: 364 ETLWGSAPQVLSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDLFEAGGDIY 423

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T  R F     + +   R   KV  LA GYQGG  A + M                  
Sbjct: 424 CETGTRMFRQVVEKHSP-LRQRAKVAVLACGYQGGVGALKTMG----------------- 465

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                    +          +  AWR  + ++++LW +++ A  
Sbjct: 466 -----------------------GEKLGLSEDEMADIVAAWRAANPKIAQLWWDINAAAI 502

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT--- 584
             I++G A    + R         DK  LI+ LPSGR LVY    +G NR    + T   
Sbjct: 503 AVIKDGGARAVGRIRLAH------DKGALIITLPSGRPLVYPSPRIGENRFGGESITHMG 556

Query: 585 ----RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
               R+  R  TYGGKLTENIVQA +RDILA  +    ++GY +V+ +HDE+V E P+  
Sbjct: 557 VGVNRKWGRIETYGGKLTENIVQATARDILAHAIARLERSGYPVVMHIHDEVVTEVPEG- 615

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             +   L  LM+  P WA GLPL AEG+ES  YRK
Sbjct: 616 RGSVEELCALMSQAPPWADGLPLAAEGFESTYYRK 650


>gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
 gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10]
          Length = 647

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 205/699 (29%), Positives = 316/699 (45%), Gaps = 80/699 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +L +D ET S ++L K G+ +YAE  D  ++LF +  D   V++ D      +P  + 
Sbjct: 4   INSLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIPDEII 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL +  VT  A N+ FER  L    NL   +    W C++V +   GLP +L+ VG  L
Sbjct: 64  NALMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGAVL 123

Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
            L  QK+ EGK+LI  FC             RN P H  + W  F  Y   DV     I 
Sbjct: 124 GLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRDVESEMLIQ 183

Query: 173 KRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL          + ++LDQ INDRG  +D+       ++ +  R KL   ++ +T   +
Sbjct: 184 QRLSKFQVPENIWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKLIALMQDITN--L 241

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   ++++K WL  + GL  + L +     +L +  +           R + ++S+V K
Sbjct: 242 ENPNSVQQMKDWL-ADNGLETDSLGKKVVAEMLKTAPEPLGTV---LELRQQLAKSSVKK 297

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLP 347
              +  A+ SDGR RG  QF GA+RTGR+SG +   QNLP+      E  + +    +  
Sbjct: 298 YTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNFD 357

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                     +++S+ +R+  I  EG K +VAD + IEARV+AW+AGE+W+L  F+ G D
Sbjct: 358 ALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRLNVFQKGGD 417

Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + ++ FNV   +       R  GK+ ELALGY G   A + M              
Sbjct: 418 IYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGAVGALKSMG------------- 464

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                      A+E        + +  AWRQ +  +++LW ++ 
Sbjct: 465 ---------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDVD 497

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NNR 577
           +A +  ++               +        L ++LPSGR L Y             + 
Sbjct: 498 RAVKTCVKQKTPTATHG------IKFIYQSGMLFIVLPSGRRLAYVKPRMGENMFGSESV 551

Query: 578 SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           +Y     T++  R  +YG K  ENIVQA+SRDIL   M         IV  VHDEI+ E 
Sbjct: 552 TYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTL--KNCSIVAHVHDEIIIEA 609

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                 + S +   M   P+WA GL L A+GYE + Y+K
Sbjct: 610 --DMGMSLSAICEQMAKTPTWANGLLLSADGYECQFYQK 646


>gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 662

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 201/717 (28%), Positives = 304/717 (42%), Gaps = 98/717 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M T+ ID ET S ++L KCG+ KYAE     ++LF +  D   V++ D      +P  + 
Sbjct: 1   MKTISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIPDDIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFN--------------------LDIPIHRWICTLV 98
           +AL +  VT  A N+ FER  L                           +    W C+++
Sbjct: 61  DALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCSMI 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154
            +   GLP +L+  G  LKL SQKM+EGK+LI  F   CK         RN P H  + W
Sbjct: 121 WSAYMGLPLSLEGAGAVLKLDSQKMKEGKDLIRYFCVPCKETKLNGGRTRNLPRHAPDKW 180

Query: 155 RLFGEYCKGDVTVTREIFK--RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            LF  Y K DV V   I +  +  P+     + ++LDQ INDRG  +D  LA     I  
Sbjct: 181 TLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYHLDQEINDRGIAIDRTLAENAIVIDA 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             R  L   L+  T   + +   + ++  WL  + G+  + L +   Q +L + ++    
Sbjct: 241 RSRDSLMAVLKGKTG--LENPNSVIQMIGWL-EQHGMKTDSLGKKQVQELLKTAEEP--- 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R + ++S+V K   +      D R RG  QF GA+RTGR++G     QNLP+ 
Sbjct: 295 LRSVLLLRQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHIQLQNLPQN 354

Query: 333 SRSHEELDQIIT---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                   + +    +             ++S  +R+  +  +G K VV+D + IEARVL
Sbjct: 355 HLPDLAEARELVRQGNYEALELLYDSIPDVLSQLIRTAFVPRKGMKFVVSDFSAIEARVL 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKA 447
           +W+AGE W+L  F    D+Y  + +  F V   +       R  GK+ ELALGY G   A
Sbjct: 415 SWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGA 474

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            + M                                         A++          + 
Sbjct: 475 LKAMG----------------------------------------ALDMGLTENELYPLV 494

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           ++WR  +  + + W ++    +  I+    + A   R             L + LPSGR 
Sbjct: 495 QSWRSANPHIVDFWWQVDATVKTAIKEQIPMRAGCIR------FLCQSGMLFIQLPSGRR 548

Query: 568 LVY--RDVGNNRSYLNT-------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
           L Y    +G NR    +        T++  R  +YG K  ENIVQ +SRDIL   M    
Sbjct: 549 LSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENIVQGISRDILCYAMQTL- 607

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                IV  VHDE++ E       +   +   M   P WA+GL L+A+GYE + Y+K
Sbjct: 608 -RCCAIVGHVHDELIIECSRDA--SVDAICEQMGRTPPWAEGLLLRADGYECEFYQK 661


>gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378]
          Length = 684

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 206/701 (29%), Positives = 321/701 (45%), Gaps = 82/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L K G+ +Y  A+D  VILF +  D   V++ D +    +P+ + 
Sbjct: 39  MKNLEIDIETYSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLMDGEKIPKEIL 98

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
           +AL +  +T  A N+ FER  L           +    W C++V +   GL  +L+ VG 
Sbjct: 99  DALTDETITKWAFNAQFERVCLSRYLGYPTGTYLNPSSWKCSMVWSAYMGLALSLEGVGA 158

Query: 115 ALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTRE 170
            L L  QK+ EGK+LI  F   C          RN        W+ F  Y K DV    +
Sbjct: 159 VLGLEKQKLTEGKDLIRYFCLPCTPTKINGGRTRNLSTDEIDKWQQFKAYNKRDVEAEIQ 218

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I +RL   P+     + ++LDQ INDRG  VD+        + D+   KL   ++ +T  
Sbjct: 219 IQQRLIKFPVPEDIWDEYHLDQEINDRGIKVDMDFVKQAIAMDDISHEKLLTVMQQITN- 277

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K+WL    GL +E L +          K+   +  +V + R + ++S+V
Sbjct: 278 -LDNPNSVQQMKSWLCE-NGLEMETLGKKAVA---EKLKETDGELNEVLSLRQQLAKSSV 332

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---H 345
            K   +  A+ SD R RG  QF GA+RTGR++G +   QNLP+      +  + I     
Sbjct: 333 KKYTAMENAVCSDSRARGMFQFYGANRTGRFAGRLVQLQNLPQNHMPDLKEARNIVRNGD 392

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           + T      D    +S  +R+  +   G K +VAD + IEARVL+W+AGE W+ K F +G
Sbjct: 393 VETLEMLYEDIPDTLSQLIRTAFVPRVGHKFIVADFSAIEARVLSWLAGETWRTKVFASG 452

Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ F V   +       R  GK+ ELALGY G   A + M            
Sbjct: 453 GDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG----------- 501

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                        A+E        + +  AWR  +  +++ W +
Sbjct: 502 -----------------------------ALEMGLEEEELKPLVNAWRMSNPNITQFWWD 532

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581
           + +A +Q ++  K+       +   +        L ++LPSGR L Y    +G N+    
Sbjct: 533 VDRAAKQCVKENKSQ------ETHSIEFHCFSGMLFIVLPSGRRLAYVKPRIGENQFGGE 586

Query: 582 TT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           +        T++  R  +YG K  ENIVQA+SRDIL   M +     Y IV  VHDE++ 
Sbjct: 587 SVTYEGVGGTKKWERLESYGPKFVENIVQAISRDILMHAMKSLRH--YRIVAHVHDEVII 644

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ET    + + + +   M+  P WAKGL L A+GYE   Y+K
Sbjct: 645 ET--NPQISVTEVCKQMSQVPPWAKGLLLDADGYECDFYQK 683


>gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC
           43243]
          Length = 644

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 206/697 (29%), Positives = 317/697 (45%), Gaps = 76/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L  CG+ +YA  E   ++LFA+  +D P  + D      MP  + 
Sbjct: 1   MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTRIIDLASGQTMPDEIM 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V   A N+ FER  +   F L +    W CT V A    LP +L+ VGEAL L
Sbjct: 61  ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKR 174
             +KM EGK+LI  F   CK         RN P +  E W LF  YC  DV V ++I  +
Sbjct: 121 DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIRNK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+  +EQEL+ +DQ INDRG  VD  L         + +    +    ++   + +
Sbjct: 181 LAKFPIPDREQELYCMDQRINDRGIMVDRELISHAVTCDLLYKEAASKRAYEISG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  + G+ ++ L +   + ++        +  ++   R+  S+++V K  
Sbjct: 239 PNSVSQLKEWLNEK-GIEVDSLAKAAVEELVEK---TEGEISEMMKLRLSMSKTSVKKYE 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---S 349
            +  ++  DGR+ G LQF GA+RTGRW+G +    NLP+      EL + I         
Sbjct: 295 AMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDLV 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S+ +R+  +A  G + +V+D + IEARV+ ++AGE W ++ F     +Y
Sbjct: 355 ELLYDSTPDVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKIY 414

Query: 410 VTTYARSFNVAPAQVTKDQRAIG--KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             T ++ F++   ++TK        KV  LA  Y G   A   M +   +          
Sbjct: 415 EQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEE------- 467

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                               + + ++WR  +  +   W E+  A
Sbjct: 468 ----------------------------------ELKGLVQSWRTANPHIVNYWYEIDGA 493

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--------NNRSY 579
            +  ++  K     +      V +      L + LPSGR L Y             + SY
Sbjct: 494 VKAAVKERKMTTVGR------VTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVSY 547

Query: 580 LN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
               T R+ TR  +YG K  ENIVQA +RD+LAE M+   K G+DIV  +HDE+V E P+
Sbjct: 548 EGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLCLEKKGFDIVCHIHDEVVLEVPE 607

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +   +  +M   P W +GLPLKA G+ES  Y+K
Sbjct: 608 GT-SSVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643


>gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
 gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3]
          Length = 662

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 208/717 (29%), Positives = 322/717 (44%), Gaps = 98/717 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M T+ ID ET S +DL KCG+ +Y       ++LF +  D  PV++ D      +P+ + 
Sbjct: 1   MKTISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIPEDIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACF-----NLD---------------IPIHRWICTLV 98
           +AL +  V   A N+ FER  L          LD               +    W C++V
Sbjct: 61  DALTDDTVLKWAFNANFERVCLSRYLRDMGRGLDPFHDNHPLSLEHARFLNPEGWRCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKP-NHREAW 154
            A + GLP +LK VG  L+L+ QKM+EGK LI  F   C          RN P +    W
Sbjct: 121 WAATMGLPLSLKGVGAVLQLADQKMDEGKALIKYFSVPCAPTKANGGRTRNLPSDDPGKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             F +Y + DV V   I ++L   P+     + +++DQ INDRG  +D+ L      +  
Sbjct: 181 ATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLVEKAIDMDT 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             R++L ++++++T   + +   ++++K WL    G+ ++ L +   + V +  K   P+
Sbjct: 241 RSRSELTEKMQAITN--LENPNSVQQMKQWLSD-NGMEVDSLGK---KAVTALLKTAPPE 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +V   R + ++S+V K  T+  A+ SD R RG   F GA+RTGRW+G +   QNLP+ 
Sbjct: 295 LTEVLELRQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQLQNLPQN 354

Query: 333 SRSHEELDQIITHL---PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                +  + +              D    +S  +R+  I  +G +  VAD + IEARV+
Sbjct: 355 HLPDLDAARALVKSGDYEAVKMIYEDVPDTLSQLIRTAFIPKDGCRFYVADFSAIEARVI 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKA 447
           AW AGE+WK  AF  GED+Y +T  R F+    +     + RA GK+ ELA GY G   A
Sbjct: 415 AWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAELACGYGGSTGA 474

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            + M                                         A+E          + 
Sbjct: 475 LKAMG----------------------------------------ALEMGLSEDELPDIV 494

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            +WR  + ++ + W ++ +A    ++N K     +      +        L + LPSGR+
Sbjct: 495 SSWRDANQQIVKFWWDVDKAVMAAVKNHKTTRLGR------LAFFWQAGMLFITLPSGRN 548

Query: 568 LVY--RDVGNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
           L Y    VG NR             T++  R  +YG K  ENIVQA SRDIL   M    
Sbjct: 549 LAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQATSRDILCNSMKMLR 608

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               D+ + +HDE+V E       +   L   M   P+WA GL L+A+GY    Y+K
Sbjct: 609 H--CDVCMHIHDELVIEA--DPRVSLDTLCEQMGRVPAWADGLVLRADGYVCDFYKK 661


>gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
 gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN]
          Length = 644

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 203/697 (29%), Positives = 316/697 (45%), Gaps = 76/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQLSIDIETYSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L    +  +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT     +
Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKKLTGLA--N 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + G+  + L++ +  ++L +    T    QV   R   S+S++ K  
Sbjct: 239 PNSPLQLKDWLHQQ-GIKTDSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSIKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349
            + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    E  + +     +P  
Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ ++F   ED+Y
Sbjct: 355 AMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + ++ F V   +     + R  GK+ ELALGY G   A + M +T             
Sbjct: 415 CASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGAT------------- 461

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                                 + + WR     + + W ++ +A
Sbjct: 462 ---------------------------NLGLTDDELPPLVQMWRNASPHIVQFWWDVDKA 494

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR-------S 578
            ++ I+          +             + L L SGR L Y    +G NR        
Sbjct: 495 AKECIKTHLPQTTHGMK------FIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESITF 548

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
             N T ++  R  TYG KL ENIVQA SRD+LA  M     AG  +V+ +HDE V + P 
Sbjct: 549 MGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPT 608

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +   +  +MT  P WA GL L A G+    Y+K
Sbjct: 609 D--RSLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643


>gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 662

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 202/717 (28%), Positives = 312/717 (43%), Gaps = 98/717 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S ++L+KCG+ KYAE  D  ++LF +  D   V + D      +PQ + 
Sbjct: 1   MQTLSIDIETYSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLPQKII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFN--------------------LDIPIHRWICTLV 98
           +AL +  V   A N+ FER  L                           +    W C++V
Sbjct: 61  DALTDDTVIKWAFNANFERVCLSRYLRDLGVSLDPFHDNHPLSTECARFLNPESWRCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAW 154
            A + GLP +L+ VG  L L  QK+ EGK+LI  F   C          RN P H  + W
Sbjct: 121 WAATMGLPLSLEGVGAVLGLEKQKLTEGKDLIKYFSVPCAPTKANGGRTRNHPFHAPDKW 180

Query: 155 RLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             F +Y   DV     I  RL   P+     + +++DQ INDRG  +D+ L     ++  
Sbjct: 181 EAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDLVKEAIEMDT 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             R++L   ++ +T   + +   ++++K WL    GL  + L +     ++ +     P+
Sbjct: 241 RSRSELTAAMKDMTA--LDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIKT---APPE 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R + ++S+V K  T+  A+  DGR RG   F G +RTGRW+G +   QNLP+ 
Sbjct: 295 LQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGRWAGRLIQLQNLPQN 354

Query: 333 SRSHEELDQIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                   + +              D    +S  +R+  I  +G +  V+D + IEARV+
Sbjct: 355 HLPDLADARALVKSGNFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQFYVSDFSAIEARVI 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKA 447
           AW AGE W+ K FETG D+Y  + ++ F+V   +       R  GK+ ELALGY G   A
Sbjct: 415 AWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSVGA 474

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            + M +                                         E          + 
Sbjct: 475 LKAMGAI----------------------------------------EMGLSEDELPPLV 494

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            AWRQ +  + + W ++ ++  + ++      +        +        L + LPSGR+
Sbjct: 495 DAWRQTNPNIVKFWWDVDRSVMEAVKYKHTTSSYG------LTFSCRSGMLFITLPSGRN 548

Query: 568 LVY--RDVGNNRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
           L Y    +G N+            +T++  +  +YG K  ENIVQA SRDIL   M    
Sbjct: 549 LAYVKPKIGTNKFGGECVTYEGIGSTKKWEQLDSYGPKFVENIVQATSRDILCYAMKTL- 607

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                IV+ +HDE+V E       +  +L   M   P WAKGL L+A+GY +  Y+K
Sbjct: 608 -RCCSIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWAKGLKLRADGYVTPFYKK 661


>gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
 gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii ATCC 51333]
          Length = 640

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 218/693 (31%), Positives = 317/693 (45%), Gaps = 72/693 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET SP+ L K G+ KY    D  ++LF++  D   V   D      +P  + 
Sbjct: 1   MRTLSIDIETYSPVILAKAGVYKYCNHPDFKILLFSYAIDSCTVRTVDLASGEQLPDAVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL ++ VT  A+N+ FERT L A     +    W C++V A + GLP +LK VG+ L L
Sbjct: 61  DALADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAATLGLPLSLKDVGKVLNL 120

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-- 176
            +QKM+EGK+LI  FC  + +     R   +    W+LF  Y   DV V   I ++L   
Sbjct: 121 DAQKMDEGKDLIKHFCVPDDNS--QRRLPSSDPAGWKLFKMYNARDVEVETAIRQKLADF 178

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           P+     E + +DQ INDRG  +D  LA     I +  R +       LT   + +    
Sbjct: 179 PVPDYLWEQYEVDQRINDRGIRIDTTLAANAIAIDEEHRAQALARAHKLTG--LDNPASP 236

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
            +L+ WL    G  +E + + +    L      T Q  +    R   SRS+V K   +++
Sbjct: 237 LQLQEWLNQH-GCPIESMAKESVDDAL---ANATGQVREALELRQELSRSSVAKYRKMID 292

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS---ITSD 353
              +D R  G LQF GA+RTGRW+G +   QNLPR         + +             
Sbjct: 293 VTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGETLEMLY 352

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                 +S  +R+  I S   + +VAD + IEARVLAW+AGE+  L AF+ GEDLY  T 
Sbjct: 353 SSVPDTLSQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCATA 412

Query: 414 ARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           +  F V   +     + R  GK+  LA GY G   A + M +                  
Sbjct: 413 SAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALK---------------- 456

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           + +  AWRQ +  + +LW+++  A  + 
Sbjct: 457 ------------------------MGLSEDELQPIVDAWRQANPNIVQLWHKVDNAATRA 492

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT----- 584
           I  G+ +  R       +  +K    L + LPSGR L Y    +G NR    + T     
Sbjct: 493 ISTGRPLTLR------NLGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGGTSITYWGQG 546

Query: 585 --RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
             R+  +  TYGGKL ENIVQA +RD+LAE +     AG+ IV+ +HDE+V + P     
Sbjct: 547 VARKWQKLETYGGKLVENIVQATARDLLAEAITRIENAGHQIVMHIHDEVVIDEPINSGT 606

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             + +  LM   P WA+GLP+ A GYE   Y+K
Sbjct: 607 TVADICALMNELPQWAEGLPIDAAGYECGFYQK 639


>gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 674

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 206/710 (29%), Positives = 319/710 (44%), Gaps = 94/710 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L +D ET S ++L KCG+ KYAE  D  ++LF +  D   V++ D      +P+V+  AL
Sbjct: 20  LSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVLSAL 79

Query: 62  ENTDVTIVAHNSYFERTVLKACF----------------NLDIPIHRWICTLVLARSNGL 105
            +  VT  A N+ FER  L                     L +    W CT++ + + GL
Sbjct: 80  TDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSSWHCTMIWSATLGL 139

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYC 161
           P +L+ VG  L L  QK+ EGK LI  F   C          RNK  H  E W  F  Y 
Sbjct: 140 PMSLENVGIVLGLDKQKLTEGKNLIKYFCLPCNPTKVNGGRTRNKYFHDKEKWEQFKSYN 199

Query: 162 KGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           K DV V   I ++L   P+     + +YLDQ INDRG  +D     +  ++    +T L 
Sbjct: 200 KRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESAIKLDLEVKTHLM 259

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            EL+ +T   + +   + ++++WL  + GL +E L +   + V    K +  +  +V   
Sbjct: 260 SELKRVTG--LENPNSVLQMRSWL-KKHGLEMESLGK---KEVAKELKTVGKELAEVLRL 313

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R + ++S+V K   +  A   D R RG  +F GA+RTGR++G +   QNLP+        
Sbjct: 314 RQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQNLPQNHLPDLAE 373

Query: 340 DQIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            + +     +        D    +S  +R+  I   G K +VAD + IEARVLAW+AGE+
Sbjct: 374 ARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGLKFIVADFSAIEARVLAWLAGEK 433

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           W+++ F  G+D+Y ++ ++ F+V   +       R  GK+ ELALGY G   A + M + 
Sbjct: 434 WRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGA- 492

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                                  ++        + +  AWR  +
Sbjct: 493 ---------------------------------------LDMGLTEDELQPLVDAWRSSN 513

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V+ LW ++ +A +Q +    ++          +        LI+ LPS R L Y    
Sbjct: 514 PMVTTLWWDVDRAVKQCVHEHVSVRT------HNIVFTYKSGFLIIKLPSKRCLYYVKPR 567

Query: 575 -NNRSYLN--------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                Y           +T++  R  +YG K  ENI QA++RDIL   M       Y IV
Sbjct: 568 VEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQAIARDILIYAMQTL--KEYRIV 625

Query: 626 LTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             VHDE + ET  +   +   +  LM   P WA+GL L+A+GYE + Y+K
Sbjct: 626 AHVHDEAIIETDKS--VSVQSVCELMGRTPPWAEGLLLRADGYECEFYKK 673


>gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
 gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112]
          Length = 644

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 204/697 (29%), Positives = 315/697 (45%), Gaps = 76/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L+N ++   A N+ FER  L       +    W C+ V + + GLP +L+ +G  L L
Sbjct: 61  EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT     +
Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTGLA--N 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + G+    L++ +  ++L +    T    QV   R   S+S+V K  
Sbjct: 239 PNSPLQLKDWLQQQ-GIKTNSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349
            + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    E  + +     +P  
Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ ++F   ED+Y
Sbjct: 355 AMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + ++ F V   +     + R  GK+ ELALGY G   A + M +T             
Sbjct: 415 CASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK------------ 462

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                                 + + WR     + + W ++ +A
Sbjct: 463 ----------------------------LGLTDDELPPLVQMWRNASPHIVQFWWDVDKA 494

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT- 584
            ++ I+          +             + L L SGR L Y    +G NR    + T 
Sbjct: 495 AKECIKTHLPQTTHGMK------FIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESITF 548

Query: 585 ------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                 ++  R  TYG KL ENIVQA SRD+LAE M      G  +V+ +HDE V + P 
Sbjct: 549 MGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAP- 607

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +   +  LMT  P WA GL L A G+ S  Y+K
Sbjct: 608 -FNRSLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 643


>gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
 gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2]
          Length = 649

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 225/701 (32%), Positives = 332/701 (47%), Gaps = 79/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DLT CG+  Y  A D  ++LF + +DD PVEL D      +P  + 
Sbjct: 1   MRTLAIDIETFSSVDLTSCGVYTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAIV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            A+E+ +V   A N+ FER  L    N  +    W CT + A   GLP  L  VG ALKL
Sbjct: 61  NAIESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGVGTALKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK   GK+LI  F   CK         RN P+H  E W+ F +YC  DV V RE+ ++
Sbjct: 121 KVQKDRAGKDLIRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRDVEVEREVRRK 180

Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+  KE +LW LDQ IND G  VD+AL +   +      ++L+ E ++LT   + +
Sbjct: 181 IERYPIPEKELKLWLLDQKINDTGVLVDMALVNQAVKCDTQYSSRLEVEAKTLT--KLDN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  + GL +E L++   Q +L+       +  ++   R   ++S++ K  
Sbjct: 239 PNSVAQLKEWLKEQ-GLEVESLSKQAVQNLLT---DADGEIERLLTLRQEMAKSSIAKYA 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL---PTS 349
            +  ++  D R+RG  QF GA+RTGRW+G +F  QNLP+      E+ +++         
Sbjct: 295 AVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNLPQNHMKDLEIARMLVKQGRFKEL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S+ +R+ +I  +G + +VAD + IEARVLAW+A E W L  F+    +Y
Sbjct: 355 ELLYESVPIVLSELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDTFKGHGKIY 414

Query: 410 VTTYARSFNVAPAQVTK-----DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
             T +R F V   ++ K     + RA GKV  LA GYQGG  A + M +           
Sbjct: 415 EQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGYQGGVNALKAMGADK--------- 465

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                               T  + + +AWR  + R+   W ++
Sbjct: 466 -------------------------------MGLSDTELDDIVRAWRSANQRIVRFWYDV 494

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR------- 577
            +A    +   +       R       K +   L + LPSGR L Y      +       
Sbjct: 495 EKAAVLAVREREPQRVGILR------FKVENGILFITLPSGRRLAYIRPKIEKDLRFDKD 548

Query: 578 --SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
             +Y      +Q  R+ TYGG+L ENIVQ  +RD LAE M+     GY IV  VHDEI+ 
Sbjct: 549 GLTYEGLGINKQWWRQKTYGGRLVENIVQGAARDCLAEAMLRVDAKGYKIVGHVHDEIIT 608

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E     + +   L  +M     WA GLPL+A+G+E+  Y+K
Sbjct: 609 EMRKG-QGSLEELCGIMGQEIPWALGLPLRADGFETMFYKK 648


>gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
 gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC
           29176]
          Length = 661

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 198/715 (27%), Positives = 310/715 (43%), Gaps = 96/715 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S ID++KCG  KYAE  +  ++LF    D+ PV ++D      +P  + 
Sbjct: 2   MKELSIDLETYSDIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVYDLASGDEIPAEIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD------------------IPIHRWICTLVLA 100
            AL + ++   A N+ FER  L                         +    W CT++ +
Sbjct: 62  AALSDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPASWKCTMIWS 121

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRL 156
              GLP +L+ VG  LKL  QKM+EGK+LI  FC   K         RN P H  + W  
Sbjct: 122 AYMGLPLSLEGVGAVLKLQDQKMKEGKDLIKYFCSPCKPTKVNGGRTRNLPEHAPDKWET 181

Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           F  Y + DV V   I +RL   P+       +++DQ IND G  +D+ +        +  
Sbjct: 182 FKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVVENAIAFDERS 241

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
           ++ L   ++++T   + +   + ++K WL    G+  E L +     ++   K+      
Sbjct: 242 KSALITAMKNITN--LDNPNSVVQMKQWLSD-NGVETESLGKKEVAGLI---KETDGDIS 295

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +    R++ ++S+V K   +  A+  DGR  G  QF GA+R+GRW+G +   QNLP+   
Sbjct: 296 KALKLRLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQLQNLPQNHM 355

Query: 335 SHEELDQIITHLPT---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
           S     + +              D    +S  +R+  IA  G K +V+D + IEARVLA 
Sbjct: 356 SDLTEARELVRTGDYDTLDMLYDDIPDTLSQLIRTAFIARPGYKFIVSDYSAIEARVLAH 415

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQ 449
           +AGE W+ K F  G+D+Y  + ++ F V   +       R  GK+ ELALGY G   A +
Sbjct: 416 LAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIAELALGYGGSVGALK 475

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            M +                                        +E        + +  +
Sbjct: 476 SMGA----------------------------------------LEMGLTEEELQPLVDS 495

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           WR  +  ++  W  +  A +  I+           +V  ++       L++  PSGR L 
Sbjct: 496 WRSSNPMITAFWWNVDNAIKTAIKMHIPT------EVNGIHFCYKSGMLLIKRPSGRVLS 549

Query: 570 Y--RDVGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
           Y    +G NR    +        T++  R  +YG K  ENIVQAVSRDIL   M      
Sbjct: 550 YVKPKIGENRFGGESVTYEGIGSTKKWERIESYGPKFVENIVQAVSRDILCNAMKTLRH- 608

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              IV  VHDE++ E     +   + +   M  +  W  G+ L+A+GYE+  Y+K
Sbjct: 609 -CFIVGHVHDELIIECSSGVD--LNEICKQMGRSLDWMPGILLRADGYETNFYKK 660


>gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 643

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 220/697 (31%), Positives = 332/697 (47%), Gaps = 77/697 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S +DL K G+ KYAE  D  ++LFA+  DD  V++ D     ++P+ + 
Sbjct: 1   MKKISIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  +   A N+ FER  L       +    W CT++ +   GLP +L+ VGE LKL
Sbjct: 61  SALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKR 174
             QKM EGK LI  F   CK      +  RN P+H    W +F EY + DV    EI K+
Sbjct: 121 DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYNQRDVETEMEIKKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+   E E +++DQ INDRG  +D  L  +  +  ++ R +       LT   + +
Sbjct: 181 LSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENMDRAIELTG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + GL ++ L +   + V S+ K       +V   R   S+S+V K +
Sbjct: 239 PNSPLQLKEWLNKK-GLEIDSLAK---KDVESAIKNAEGDIKEVLELRQELSKSSVRKYD 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349
            +      + R RG +QF GA+RTGR+SG +   QNL R +    +L + +       T 
Sbjct: 295 AMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYETM 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                 P  I+S  +R+  I  EG + +++D + IEARVLAW+A EQW L AFE GED+Y
Sbjct: 355 EFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVLDAFENGEDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             T +R F V   +       R  GK+  LA GYQG   A + M                
Sbjct: 415 CRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKAMG--------------- 459

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                     IE        + +  +WR+ +  +  LW ++   
Sbjct: 460 -------------------------GIEMGLSEDELQSIVDSWREANPNIVSLWWDIDSV 494

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR--DVGNNRSYLNT--- 582
            ++ ++         + +   + +  +K  L + LPS R L Y    +G NR    +   
Sbjct: 495 VKRVVKTRS------KEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESVVY 548

Query: 583 ----TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                  +  +  +YGGK  ENIVQA++RDILAE MM   K G++IV+ +HDE+V E   
Sbjct: 549 EGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE--- 605

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +D  +   +  +M+  P WA GL L A+G+ES+ Y+K
Sbjct: 606 SDSSSIEEVNQIMSIVPGWASGLILDADGFESEFYKK 642


>gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 675

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 397/677 (58%), Positives = 488/677 (72%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  LFID ETRSP  L K G+  YAE+  + L A+  +D  ++LWDC  +PVMP  L + 
Sbjct: 1   MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L++  V  VAHNS FER + K   N+ IP  RWICT  LAR NGLP++LK    ALK   
Sbjct: 61  LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG   E  YD  + NH +AW+LFGEYCK DV  TRE++KRL PL
Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E+ LW LDQ INDRGY +D+ L   L +++  ER +LD+E + LT G++ S+R  + 
Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDL 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L  +LFL TGL L D+ E+T    LS    +   +  + NNR+ +S+SA+LKLNTL  A+
Sbjct: 241 LNKYLFLYTGLDLPDMAESTVLTALSQ-PDIPQLSKAILNNRLSSSQSAILKLNTLSGAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           + D RLRGTLQF GASRTGRWSGCVF PQNLPR + + +E++++I  L +      DPL+
Sbjct: 300 SPDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSG-VPIKDPLR 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
             SDCVRSC+IAS GKKL+VADLAGIEARVLAW+AGEQWKL AF  GED+Y T Y+++FN
Sbjct: 359 FASDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V  + VTKDQRAIGKVMELALGYQGGA+ FQKMAST GLNL  F+  +K  +  E+WE A
Sbjct: 419 VPLSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           +  C WMQE HPE A+ D FIGTACE VK+AWR KH  V +LW +  +AF+  I++G++I
Sbjct: 479 QRRCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+   VP + MKK   N+ + LPS R LVYRDV ++RSYLNT T Q+ RE TYGGKLT
Sbjct: 539 SARRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDILA GM+NATKAGYDIVLTVHDEIVCE PDT EF++  L  LMT NP+WA
Sbjct: 599 ENIVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+ RYRK
Sbjct: 659 KGLPLKAEGYEAVRYRK 675


>gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK1057]
          Length = 643

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 218/698 (31%), Positives = 330/698 (47%), Gaps = 79/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DLTKCG+ +Y +     ++LFA+  D++  ++ D V    +P+ + 
Sbjct: 1   MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  +   A N+ FER  L       +    W CT VLA S GLP +L+ VG  L +
Sbjct: 61  LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QKM+EG  LI  F   CK      + +RN P+H  E W LF  YCK DV V + I  R
Sbjct: 121 EEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIRVR 180

Query: 175 L--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   PL   EQ  + LDQ INDRG  VD  L           + ++ +    L+   + +
Sbjct: 181 LRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  E G+ ++ L +   + V    K+   + +++   R+  S+++V K  
Sbjct: 239 PNSVSQLKGWL-EEQGVFMDSLGK---KEVAKHLKEADGEVLEMLKLRLLMSKTSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349
            +   + SDGR+ G LQF GA+RTGRW+G +   QNLP+       L + +     + T 
Sbjct: 295 AIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQVETL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            T   +   ++S+ +R+  +   G + +VAD A IEARVLAW++GE W+L+ FE G D+Y
Sbjct: 355 DTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + +  F V   +       R  GK+ ELALGY G   A   M +   GL         
Sbjct: 415 CASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEE------ 468

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                + +   WR  +  +   W E+ +
Sbjct: 469 -----------------------------------ELQPLVNQWRSANPHIVAFWWEIDK 493

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT--- 583
             +Q  E  +       + +  + +      L + LPSGR L Y       +        
Sbjct: 494 VAKQVYETREP------KKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLT 547

Query: 584 ------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                 +++ TR  TYG KL ENIVQ ++RD+LA GM+   + G  IVL VHDE V E  
Sbjct: 548 YEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEVR 607

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +    + + +  L+ + P WA+GLPL+A+GY  + Y+K
Sbjct: 608 E---ESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642


>gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK72]
          Length = 643

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 218/698 (31%), Positives = 329/698 (47%), Gaps = 79/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DLTKCG+ +Y +     ++LFA+  D++  ++ D V    +P+ + 
Sbjct: 1   MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  +   A N+ FER  L       +    W CT VLA S GLP +L+ VG  L +
Sbjct: 61  LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QKM+EG  LI  F   CK      + +RN P+H  E W LF  YCK DV V + I  R
Sbjct: 121 EEQKMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIRVR 180

Query: 175 L--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   PL   EQ  + LDQ INDRG  VD  L           + ++ +    L+   + +
Sbjct: 181 LRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL  E G+ ++ L +   + V    K+   + +++   R+  S+++V K  
Sbjct: 239 PNSVSQLKGWL-EEQGVFMDSLGK---KEVAKHLKEADGEVLEMLKLRLLMSKTSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL---PTS 349
            +   + SDGR+ G LQF GA+RTGRW+G +   QNLP+       L + +       T 
Sbjct: 295 AIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQFETL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
            T   +   ++S+ +R+  +   G + +VAD A IEARVLAW++GE W+L+ FE G D+Y
Sbjct: 355 DTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + +  F V   +       R  GK+ ELALGY G   A   M +   GL         
Sbjct: 415 CASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEE------ 468

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                + +   WR  +  +   W E+ +
Sbjct: 469 -----------------------------------ELQPLVNQWRSANPHIVAFWWEIDK 493

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT--- 583
             +Q  E  +       + +  + +      L + LPSGR L Y       +        
Sbjct: 494 VAKQVYETREP------KKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLT 547

Query: 584 ------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                 +++ TR  TYG KL ENIVQ ++RD+LA GM+   + G  IVL VHDE V E  
Sbjct: 548 YEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEVR 607

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +    + + +  L+ + P WA+GLPL+A+GY  + Y+K
Sbjct: 608 E---ESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642


>gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 644

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 202/697 (28%), Positives = 314/697 (45%), Gaps = 76/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L    +  +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGSVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT     +
Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTGLA--N 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  +  +    L++ +  ++L +    T    QV   R   S+S++ K  
Sbjct: 239 PNSPLQLKDWLQQQ-DIKTNSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSIKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349
            + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    E  + +     +P  
Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ ++F   ED+Y
Sbjct: 355 AMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + ++ F V   +     + R  GK+ ELALGY G   A + M +T             
Sbjct: 415 CASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGAT------------- 461

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                                 + + WR     + + W ++ +A
Sbjct: 462 ---------------------------NLGLTDDELPPLVQMWRNASPHIVQFWWDVDKA 494

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR-------S 578
            ++ I+          +             + L L SGR L Y    +G NR        
Sbjct: 495 AKECIKTHLPQTTHGMK------FIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESITF 548

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
             N T ++  R  TYG KL ENIVQA SRD+LAE M         +V+ +HDE V + P 
Sbjct: 549 MGNNTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDEAVIDAPS 608

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +   +  LMT  P WA GL L A G+ S  Y+K
Sbjct: 609 N--RSLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 643


>gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
 gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662]
          Length = 663

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 190/715 (26%), Positives = 314/715 (43%), Gaps = 96/715 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + T+ ID ET S +DL KCG+ KY  ++   ++LF +  D   V + D      +P  + 
Sbjct: 4   IKTISIDIETYSDVDLQKCGVYKYVQSDSFEILLFGYSVDGGEVSVVDLKQGEKIPMEII 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACF------------------NLDIPIHRWICTLVLA 100
            AL + ++T  A N+ FER  L                         +    W C++V +
Sbjct: 64  MALTDENITKWAFNANFERVCLSEYLRRFYPKKFVSYSIPEDSVGNYLDPSSWKCSMVWS 123

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRL 156
              GLP  L   G  L L  QK+ EGKELI  FC   K         RN P H    W +
Sbjct: 124 AYMGLPLLLAGAGAVLGLEEQKLTEGKELIRYFCVPCKPTKVNGGRTRNLPQHDMIKWEM 183

Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           F +Y K DV V   I  +L   P+ +   E ++LDQ INDRG  +D+ +        +  
Sbjct: 184 FKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDVVTNAIAFDEKS 243

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
           +  L  +++ +T   + +   ++++K WL    GL ++ L +     VL++  +      
Sbjct: 244 KAVLADKMQEMTG--LENPNSVQQMKQWLSC-NGLEMDSLGKKEVAAVLNTAPEP---LK 297

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            V   R + ++S+V K   +  A+ SDGR RG   F GA+R+GRW+G +   QNLP+   
Sbjct: 298 TVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLIQLQNLPQNHM 357

Query: 335 SHEELDQIITHLPTSIT---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
           S  E  + +              D    +S  +R+  +  +G + +V+D + IEARVL+ 
Sbjct: 358 SDLEEARSLVKQGNYEAMNMLYDDVPDTLSQLIRTAFVPRKGMEFIVSDFSAIEARVLSH 417

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQ 449
           +AGE+W+   F +G D+Y  + ++ F V   +       R  GK+ ELALGY G   A +
Sbjct: 418 LAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALK 477

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            M +                                        ++        + +   
Sbjct: 478 SMGA----------------------------------------LDMGLEEDELKPLVDM 497

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           WR+ +  + +LW ++ +A ++ ++  +         +  +        L + LPSGR L 
Sbjct: 498 WREANPNIVKLWWDVDRAVKKAVKQREP------SSIGSITFSYKSGMLFIGLPSGRCLS 551

Query: 570 YRDVG--------NNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
           Y             + +Y     T++  R  +YG K  ENIVQA+SRDIL   +   +  
Sbjct: 552 YVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILMYAIRTLSH- 610

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              I   VHDE++ E   +   +  ++   M   P W +G+ L+A+GYE++ Y+K
Sbjct: 611 -CFICGHVHDELIIECSKS--VSLDVICEQMGRTPPWIEGILLRADGYETEFYKK 662


>gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 641

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 199/704 (28%), Positives = 304/704 (43%), Gaps = 93/704 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M +L +D ETRS +D+ + G+ +Y  AED  ++LF +  D   V++ D V    +PQ + 
Sbjct: 1   MKSLSVDLETRSSVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIPQEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACF-----------NLDIPIHRWICTLVLARSNGLPS 107
           +AL +  V   A N+ FER  L                  +    W CT+V +   GLP 
Sbjct: 61  DALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVWSAYMGLPL 120

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           +L  V   L L  QKM EGK LI  F     HE           E W LF  Y + DV V
Sbjct: 121 SLAVVARVLGLEEQKMTEGKALIRYFSTPPFHEPTG--------EKWELFKSYNRRDVEV 172

Query: 168 TREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
              I +R    P+     E + LDQ INDRG C+D+       +I    + K+   L++L
Sbjct: 173 EMAIQQRLFKYPVPQSVWEEYVLDQEINDRGICLDMPFVENAVKIDAHTKEKMTDRLKTL 232

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           T   + +   + ++K WL  + G+  E L + T   +L++         +V   R + ++
Sbjct: 233 TG--LENPNSVAQMKAWLKEQ-GVETESLDKKTVAALLTNVSA---LLKEVLELRQQLAK 286

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           S+V K   +   + +D R RG  QF GA+RTGR+SG     QNLP+   ++ E  + +  
Sbjct: 287 SSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLANLEYARSLVR 346

Query: 346 LP---TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                           ++S  +R+  I  EG+K +VAD + IEARVL+W+A E+W++  F
Sbjct: 347 QGNFAALELLYESVSDVLSQLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKERWRMDVF 406

Query: 403 ETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
               D+Y  T  R F+    +       R  GK  ELA GY G   A +           
Sbjct: 407 ANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGSVGALKAFG-------- 458

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A+E        + +  AWR  +  + + 
Sbjct: 459 --------------------------------ALESGMKEDELKPLVDAWRTANPNIVDF 486

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRS 578
           W  + +A +  I+               +        + + LPSGR L Y    +G N+ 
Sbjct: 487 WWAVDRAAKDCIKERSITGTHG------IKFIYQSGMMFIELPSGRRLAYVKPRIGENQF 540

Query: 579 YLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
              + T       ++  R  +YG KL ENI QA+SRD+L   M         IV  VHDE
Sbjct: 541 GGESITYMGLDLSKKWARIESYGPKLVENITQAISRDLLCYAMQTLRSMD--IVAHVHDE 598

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++ E    +  + S     M   P WA+GL L+A+G+E + Y+K
Sbjct: 599 LIIEC--DERVSLSSACEQMARTPLWAEGLLLRADGFECQFYQK 640


>gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 650

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 205/713 (28%), Positives = 311/713 (43%), Gaps = 102/713 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M +L ID ETRS +D+ K G+ +YAE  D  ++LF +  D   V++ D  +   +PQ + 
Sbjct: 1   MESLSIDLETRSSVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIPQEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKAC---FNLDIP-----------------IHRWICTLV 98
           +AL +  V   A N+ FER  L        + +                   H W CT+V
Sbjct: 61  DALTDESVIKWAFNANFERVCLSRYLSDLGIALDPFHDNHPLSTECARFLSPHSWRCTMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            +   GLP +L  VG  L L  QKM EGK LI  F     HE    +        W LF 
Sbjct: 121 WSAYMGLPLSLAGVGRVLGLEEQKMNEGKALIRYFSTPPFHEPTGAK--------WDLFK 172

Query: 159 EYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            Y + DV V   I KR    P+     E + LDQ INDRG  +D+ L     QI    + 
Sbjct: 173 SYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENAVQIDVRTKE 232

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
           KL   L++LT   + +   + ++K WL  + G+  E L +   + V +    +     +V
Sbjct: 233 KLTDRLKTLT--SLENPNSVTQMKAWLKEQ-GVETESLDK---KSVTALLANVPDPLKEV 286

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R + ++S+V K   +   + SDGR RG  QF GA+RTGR+SG     QNLP+   + 
Sbjct: 287 LELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLAD 346

Query: 337 EELDQIITHLP---TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
            E  + +                  ++S  +R+  I+ EG+K +VAD + IEARVL+W+A
Sbjct: 347 LEYARSLVRQGSFAALELLYESVPDVLSQLIRTAFISKEGRKFIVADFSAIEARVLSWLA 406

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKM 451
            E+W++  F    D+Y  T  R F+    +       R  GK+ EL+ GY G   A +  
Sbjct: 407 KERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGSVGALKAF 466

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                                                    A+E          +  AWR
Sbjct: 467 G----------------------------------------ALESGMKEEELNPLVDAWR 486

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570
             +  + + W  + +A +  I+     +    R           + + + LP GR L Y 
Sbjct: 487 AANPNIVDFWWAVDRATKDCIKERSTKVTHGIR------FIYQGSMMFIELPCGRRLAYV 540

Query: 571 -RDVGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              +G N+      +Y+    +++  R  +YG KL EN+ QA+SRDIL   M        
Sbjct: 541 KPRIGENQFGGESVTYMGLNLSKKWARIESYGPKLVENVTQAISRDILCYAMQTLRTMD- 599

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IV  VHDE++ E    +  + S +   M   P WA GLPL+A+G+E + Y+K
Sbjct: 600 -IVAHVHDELIIEC--DERVSLSAICEQMARTPPWADGLPLRADGFECQFYQK 649


>gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
 gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF]
          Length = 649

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 208/701 (29%), Positives = 314/701 (44%), Gaps = 82/701 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + TL  D ET S ++L KCG+ +Y  A+D  ++LFA+  D   V++ D      +P ++ 
Sbjct: 4   IKTLHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLIL 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGE 114
            ALE+  V   AHN+ FER              I    W CT+  A   GLP +L  VG 
Sbjct: 64  SALEDDKVIKYAHNASFERICFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLVGVGA 123

Query: 115 ALKLSSQKMEEGKELIARFCK---GETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTRE 170
            L L  QKM EGK+LI  FC             RN P +  E W  F  Y   DV    E
Sbjct: 124 VLGLGKQKMTEGKDLIRFFCGPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDVEAEME 183

Query: 171 IFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I ++L   P+     + ++L + IND G  VD+        + ++  TKL  +++ +T  
Sbjct: 184 IEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQEIT-- 241

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +   ++++K WL    GL  + L +     +L   K       +V   R + ++S+V
Sbjct: 242 ELDNPNSVQQMKDWLSD-NGLETDTLGKKAVAELL---KDAPEHLAEVLKLRQQLAKSSV 297

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH--- 345
            K   +  A+ SDGR+RG   FLGA+RTGR+S  +   QNLP+      +  + I     
Sbjct: 298 KKYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHMMDLKEARSIVKNGD 357

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                    D    +S  +R+  +  EG K +VAD + IEARVL+W+AGEQW+ + F  G
Sbjct: 358 SEALELLYEDIPDTLSQLIRTAFVPKEGNKFIVADFSAIEARVLSWLAGEQWRNEVFANG 417

Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ F V   +       R  GK+ ELALGY G   A + M            
Sbjct: 418 GDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGALKAMG----------- 466

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                        A+E        + +  AWR  +  + + W +
Sbjct: 467 -----------------------------ALEMGLEEEELKPLVNAWRASNPNIVKFWWD 497

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN 581
           + +  ++ I+  K+       +V  +        L ++LPSGR L Y   ++G N     
Sbjct: 498 VDREVKKCIKEKKSQ------EVQNIKFHYMSGMLFIVLPSGRKLAYVKPNIGENIFGGE 551

Query: 582 T-------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           +        T++  R  +YG K  ENIVQA+SRDIL   M   +     IV  VHDE++ 
Sbjct: 552 SVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAMKTLS--TCSIVAHVHDEVII 609

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E       +  M+   M   P WAKGL L A+GYE   Y+K
Sbjct: 610 EA--DQSLSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKK 648


>gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 655

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 215/698 (30%), Positives = 324/698 (46%), Gaps = 77/698 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
            L ID ET S +DL + G+  YAE     ++L A+ FDD  V + D V D  +P  + +A
Sbjct: 9   VLSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPIPTTVLKA 68

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  +   A+N+ FERT L A  N  +P  +W C+ V A + GLP  L  V   L L  
Sbjct: 69  LIDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVLNLGD 128

Query: 121 QKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR-- 174
           QK   GK LI  F   CK         RN P H  E W  +  YC+ DV V R + KR  
Sbjct: 129 QKDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALRKRLA 188

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             P+  KEQ LW LDQ +ND G  +D  L     Q+   E+  L +E + +T   + +  
Sbjct: 189 SNPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQITG--LENPN 246

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
            + +L+ WL    G+    L +     +L +   L     +V   R   S+++V K   +
Sbjct: 247 SVAQLRDWLTSR-GIETSGLAKKQVSDLLQT--DLPGDVRRVLILRQMMSKTSVKKYEAM 303

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352
             ++  DG +RG LQF GA+RTGRW+G +    NLP+      +  + +           
Sbjct: 304 DRSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPKHRIGDLDEARQLVKTGNYELITT 363

Query: 353 -DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                  ++S   R+  I  +G + VV+D + IEARV+AW+AGE+W++K FE    +Y  
Sbjct: 364 LYGSLADLLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVFEGHGKIYEA 423

Query: 412 TYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKT 468
           + ++ F V   ++TK    R  GK+ ELALGY G   A  +M +   GL+ +        
Sbjct: 424 SASQMFGVPIEEITKASPLRQKGKIAELALGYGGAKGALTQMGALEMGLSEDELPA---- 479

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                + KAWR+ +  +  LW +L ++ 
Sbjct: 480 -------------------------------------LVKAWRKANPNIVNLWYDLEKSA 502

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---------GNNRSY 579
            + ++  K + A+       +        L   LPSGRSL Y                +Y
Sbjct: 503 FEAVKWQKVVTAK-----SGIQFYGGSGLLRARLPSGRSLSYVRPQIGIDERFGREEITY 557

Query: 580 LN--TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                 ++Q  R  TYGGK+ EN+VQA++RD LAE M+    AGY I   VHDE+V E P
Sbjct: 558 EGVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAAGYQIRFHVHDEVVIEVP 617

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             ++   + +  +M+    WA GLP+ A+ +E+  Y+K
Sbjct: 618 -NEQDAKADIERIMSEPIDWAPGLPMNADSFETGYYKK 654


>gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 646

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 219/696 (31%), Positives = 320/696 (45%), Gaps = 75/696 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            TL ID ET S +DL  CG+ KY+      ++L A+  DD      D  +    P+   E
Sbjct: 3   RTLAIDIETYSDVDLISCGVYKYSSSPHFEILLIAYSVDDEETVCIDVANGEEPPKEFIE 62

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L +  VT  A N+ FERT     ++       W CT V A    LP +L+ VG  L L 
Sbjct: 63  MLFDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGVGAVLGLD 122

Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRL 175
            QKM EGKELI  F   CK         RN P    E WR F  YC  DV V ++I +RL
Sbjct: 123 KQKMTEGKELIKYFCSPCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVEKQIRQRL 182

Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              P+  +EQE++ LDQ INDRG  VD  L +       + +         LT   + + 
Sbjct: 183 AKFPIPKREQEIYCLDQRINDRGIMVDRNLVNHAVACDLLYKETATARAYELTG--LENP 240

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             + +LK WL  + GL ++ L + T + +    +       +V   R+  S+++V K   
Sbjct: 241 NSVSQLKLWLKEK-GLEVDSLAKDTVKDLSMKAEGD---VQEVLKLRLATSKTSVKKYEA 296

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---SI 350
           +  ++ ++ R+ G LQF GA+RTGRW+G +    NLP+      EL + +          
Sbjct: 297 IDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLPDLELARALVSEGRYEEVE 356

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                   ++S+ +R+  +A  G + +++D + IEARVLAW+AGE+W+L+ FET   +Y 
Sbjct: 357 LFYESTPNVLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQVFETHGKIYE 416

Query: 411 TTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            + +  F+VA  ++TK    R  GK+ ELALGY G   A   M                 
Sbjct: 417 ASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTSMG---------------- 460

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                   A++          +   WR  +  ++  W  + +A 
Sbjct: 461 ------------------------ALKMGLTEEELPGLVSTWRSANPHITAFWWAVDEAA 496

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNRSYL 580
              + + K     +      V  +     L + LPSGR L Y               +Y 
Sbjct: 497 VTAVRDKKPSKVGR------VSFEYKSGILFVTLPSGRKLSYVKPRMMLNKFGREGLTYE 550

Query: 581 N-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               +++  R  TYG KL ENIVQA SRDILAE M+   K G+DIV  VHDE+V E PD 
Sbjct: 551 GIGESKKWMRLETYGPKLVENIVQAASRDILAEAMLRLEKEGFDIVCHVHDEVVLEVPDG 610

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            + +   +  +M  NP W +GLPLKA G+ES  Y+K
Sbjct: 611 -KSSVEEVNEIMAVNPVWTEGLPLKAAGFESPFYKK 645


>gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 655

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/706 (32%), Positives = 317/706 (44%), Gaps = 83/706 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TLF D E+ SP  L K G+  YAE  D  ++LF +  D  PV++ D      MP  + 
Sbjct: 1   MRTLFCDIESFSPAQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLARSNGLPSAL 109
            AL ++ V   AHN+ FER  L A              +   +W CT++ +   GLP +L
Sbjct: 61  AALVDSSVVKWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSL 120

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKPN-HREAWRLFGEYCKGDV 165
            AV   LKL  QK   GK+LI +FC             RN P+     W  F +Y + DV
Sbjct: 121 DAVAAVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDV 180

Query: 166 TVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I  R    P+   E + + LDQ IND G  +D  L      + +  R       +
Sbjct: 181 EVELAIHDRLAFFPMPEAEWDTYALDQCINDAGILLDHTLVDNAVAVDEHHRNASLARAQ 240

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            LT   + +     +LK WL    G  LE L +     V ++    T    +V   R   
Sbjct: 241 KLTG--LDNLNSPIQLKQWLVTR-GCELESLAK---AEVDAALDTATGVVKEVLELRGDL 294

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +     +DGR RG +QF GA RTGR++G +   QNLPR      +  + +
Sbjct: 295 AKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARSL 354

Query: 344 T---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +L             +S  +R+  I S G + +VAD + IEARV+AW+AGE   L 
Sbjct: 355 VQTGNLDALELLYESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTLA 414

Query: 401 AFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           AF  G+DLY  T +R F+V   +     + R  GK+  LA GY G   A + M       
Sbjct: 415 AFREGKDLYCETASRMFDVPVEKHGINGELRQKGKIAVLACGYGGSVGALKAMG------ 468

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A          + +  AWRQ +  + 
Sbjct: 469 ----------------------------------AFTMGLAEHELKPIVDAWRQANPHIV 494

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
           +LW ++ QA    I + + I  R  R         +   L + LPSGR L Y    +G N
Sbjct: 495 QLWADVEQAAIAAISSRQPIRLRNLR------FSVESGILFIELPSGRRLAYVQPRLGEN 548

Query: 577 R-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           R           TT R+  +  TYGGKL ENIVQA++RD+L  GM    KAG+ IV+ VH
Sbjct: 549 RWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVVGMHAVAKAGHRIVMHVH 608

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DEIV + P   +F  +    LM++ P+WA+GLPL A+GYE   YRK
Sbjct: 609 DEIVIDEPTNLDFAVADACKLMSTLPAWAEGLPLDADGYECNYYRK 654


>gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
 gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909]
          Length = 651

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 207/705 (29%), Positives = 315/705 (44%), Gaps = 87/705 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET   +DL K G+  YAED    ++L A   D+ PV ++D      +P  + 
Sbjct: 3   IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLT-KENLPDQIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           +AL N  +   A N+ FER  L        P          + W C++V +   GLP +L
Sbjct: 62  QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPLSL 121

Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           + VG  LKL  QK++EG ++I  FC   K         RN P+H  + W  F  Y K DV
Sbjct: 122 EGVGTVLKLKEQKLKEGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKRDV 181

Query: 166 TVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I  +L   P+     E ++ DQ INDRG  +DV        I +  ++K+ +EL+
Sbjct: 182 EVELAIKNKLRNHPVPDFLWEEYHQDQNINDRGIGIDVDFVKAAITIDEESKSKIQEELK 241

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            LT   + +   + ++  WL    G+    L +   + +L      T    +V   R +A
Sbjct: 242 ELTG--LENPNSVLQMIGWLREH-GVTTNSLDKKAVKELLKVVDAKT---TKVLKLRQQA 295

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +V  +  DGR RG  QF GA+RTGRW+G +   QNLP+      +  + +
Sbjct: 296 AKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARDL 355

Query: 344 THLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   +D        +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+   
Sbjct: 356 FKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMV 415

Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           FE G+D+Y  + ++ F V   +     D R  GK+ ELA GY G   A + M +      
Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAI----- 470

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                              +        + +  +WRQ +  +  
Sbjct: 471 -----------------------------------DMGLDEQELQPLVDSWRQANPNIVL 495

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV------ 573
            W ++ +A +  I+  K            +  K  K  L + LPSGR L Y         
Sbjct: 496 FWWDVDKAVKTAIKYQKQTETHG------IQFKVRKGMLFITLPSGRKLAYVKPKMGENQ 549

Query: 574 --GNNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
             G + +Y  T T ++  R  +YG K  ENI+QA+SRDILA  M       + IV  VHD
Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQL--KDFRIVGHVHD 607

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           EI+ E   +   N   +  LM   P W   + L+A+GYE   Y+K
Sbjct: 608 EIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650


>gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 655

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 227/706 (32%), Positives = 319/706 (45%), Gaps = 83/706 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TLF D ET SP+ L K G+  Y E  D  ++LF++  D  PVE+ D  +   MP  + 
Sbjct: 1   MRTLFCDIETFSPVQLAKAGVYPYCEHPDFDLLLFSYSVDGGPVEIVDLANGQSMPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLARSNGLPSAL 109
            AL + DV   AHN+ FER  L A  +           +   +W CT+V +   GLP +L
Sbjct: 61  AALVDPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDPRQWRCTMVWSAYLGLPMSL 120

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKP-NHREAWRLFGEYCKGDV 165
            A+   LKL  QK   G++LI +FC             RN P      W  F +Y + DV
Sbjct: 121 DAIAAVLKLDVQKDSAGRKLIKQFCTPATPSVLNGGKHRNPPSADPTGWAHFIDYNRRDV 180

Query: 166 TVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V + I  R    P+   E + + LDQ IND G  +D  L      + +  R       +
Sbjct: 181 EVEQAIHDRLACFPMPESEWDTYALDQRINDAGILLDHTLVDNAVAVDEHHRNASLARAQ 240

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            LT   + +     +LK WL    G  LE L +     V S+    T    +V   R   
Sbjct: 241 KLTG--LDNPNSPIQLKQWLATR-GCELESLAK---AEVDSALDTATGAVKEVLELRGDL 294

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +     SDGR RG +QF GA RTGR++G +   QNLPR      +  + +
Sbjct: 295 AKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARTL 354

Query: 344 T---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +L             +S  +R+  I S G + +VAD + IEARV+AW+AGE   L+
Sbjct: 355 VRTGNLDALELLYESVPDTLSQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAGETSTLE 414

Query: 401 AFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           AF  G+DLY  T +R F V   +     + R  GK+  LA GY G   A + M       
Sbjct: 415 AFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKIAVLACGYGGSVGALKAMG------ 468

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A+         + +  AWRQ +  + 
Sbjct: 469 ----------------------------------ALNMGLAEHELKPIVDAWRQANPHIV 494

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
            LW ++ +A    I + + I  R  R         +     + LPSGR L Y    +G N
Sbjct: 495 GLWADVEEAAIAAISSRQPIRLRNLR------FSVESGIFFIELPSGRRLAYVQPRLGEN 548

Query: 577 R-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           R           TT R+  +  TYGGKL ENIVQA++RD+L  GM    KAG+ IV+ VH
Sbjct: 549 RWGGTSVTYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVTGMHAVAKAGHQIVMHVH 608

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DEIV + P+   F  +    LM++ P+WA+GLPL A+GYE   YRK
Sbjct: 609 DEIVIDEPENSGFTVTDACALMSTLPAWAEGLPLDADGYECAYYRK 654


>gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
 gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM
           30120]
          Length = 685

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 262/693 (37%), Positives = 378/693 (54%), Gaps = 27/693 (3%)

Query: 1   MA-TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
           M  TL++D ET S   + K G   YAE V ++LFA+  +++ V++WD      +P  LK+
Sbjct: 1   MKNTLWLDLETFSEKPI-KYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQ 59

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK-- 117
           AL + +  I AHNS+F+RT+L     + I + RW  T+V A ++GLP AL A+ E L   
Sbjct: 60  ALSDPNTIIYAHNSHFDRTML-NHSGIKIDVSRWRDTMVQALAHGLPGALGALCEVLGVP 118

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           L   K +EGK LI  FCK         R     H E W+ F  Y   D+   RE+ KRL 
Sbjct: 119 LDKAKDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAMREVHKRLP 178

Query: 177 PLSSKE--QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             +  +   E W+ DQ INDRG  +D+ LA    + V++E+ +L +  + LT   V ++ 
Sbjct: 179 SWNYCDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLTDNEVQAAT 238

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             + L   +    G+ L D+ ++T +R ++      P   ++   R+++S ++  K   L
Sbjct: 239 QRDALLQHISAAFGVDLPDMQKSTLERRINDPDIPLPL-RELLAIRLQSSTTSTSKYKAL 297

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352
           +  ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRP+     +D+ I  L        
Sbjct: 298 MNGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNTIDKGIEALKAGCADLI 357

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-----D 407
             D +Q+ S  +R C++A EGKKLVV+DL+ IE R+LAW+AGE WK+ AF   +     D
Sbjct: 358 YDDIMQLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEAWKITAFSEFDKGIGAD 417

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           LY   YAR+FN++P  V K  R IGKVMEL LGY GG  AF   A T  L+L+  A    
Sbjct: 418 LYKLAYARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTFALTYSLDLDELAEAAL 477

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            N  P+   DA ++ +   E    + + +    T C+ +K+ WR  H      W EL   
Sbjct: 478 PNIPPKVKHDALSWYQKSVETKKTYGLSETVFIT-CDSLKRMWRNAHPETVSFWYELEDT 536

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS-----YLNT 582
               I +       ++     + +++DK  L ++LPSGR++ Y    N+        +N 
Sbjct: 537 VRHAISSPGITFPCRK-----LKVRRDKAWLRIVLPSGRAVCYPSPRNDNGQISYMGVNP 591

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
            +R+  R  TYGGKL EN+ QA +RD+LA  M      GYDIVLTVHDE++ E PD   F
Sbjct: 592 YSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPTIEDHGYDIVLTVHDEVLTEAPDNPAF 651

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           N   L  L+ +NP WA  LPL A G+E+  YRK
Sbjct: 652 NHEHLSELLATNPEWALDLPLSAGGFEAYHYRK 684


>gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
 gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10]
          Length = 644

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 209/697 (29%), Positives = 316/697 (45%), Gaps = 76/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID E+ S  DL K G+ +YAE  D  ++LFA+  D  PV + D      +P V++
Sbjct: 1   MKTLNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIPDVVR 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL +  V   A N+ FERT L    N  I    W C++V +   GLP +L+        
Sbjct: 61  QALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVTGA 120

Query: 119 SSQKMEEGKELIARFCKGET---HECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             +K++EGK+LI  FCK           +RN P+H  E W  F  Y + DV   + I  +
Sbjct: 121 DKKKLQEGKDLIRYFCKPCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVETEQAIQDK 180

Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+  +E   + LDQ INDRG  +D              R  L   L +LT   + +
Sbjct: 181 ISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLRTLT--KLEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + ++K WL  + G+    L +     +L S +       +V   R + ++S+V K  
Sbjct: 239 PNSVMQMKDWLAEQ-GVETGALDKAAVHELLKSAQGD---VAEVLTIRQKLAKSSVKKYT 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPTS 349
            + +    D R RG +QF GA+R+GR++G +   QNLP+      +  + +    +L   
Sbjct: 295 AMKQVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPDLKEARDLVRASNLEAL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
               P    ++S+ +R+  I  E  + +VAD + IEARV+AW+AGE W+ + F T   +Y
Sbjct: 355 DMLYPSVPDLLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWRNEVFATHGKIY 414

Query: 410 VTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             + ++ FNV   ++ K    R  GK+ ELALGY G   A + M                
Sbjct: 415 EASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMG--------------- 459

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A++        + + +AWRQ + ++ + W  + QA
Sbjct: 460 -------------------------ALDMGVEEEELKPLVQAWRQANPKIVQFWWAVDQA 494

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLN---- 581
            ++ ++               +        L++ LPSGR L Y    +  N         
Sbjct: 495 AQKAVKQRTTTSTHG------ISFTYQSGLLLVGLPSGRHLSYVKPTIVLNDFGREGLCF 548

Query: 582 ---TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                T++  R  TYG KL ENIVQAVSRD+LA  M    + GY IV+ VHDE+V E   
Sbjct: 549 EGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAIVMHVHDEVVVEA-- 606

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                 S +  LMT  P W+ GL LKAEGY    Y+K
Sbjct: 607 KQHVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQK 643


>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1]
 gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2]
 gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1]
          Length = 675

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 402/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 402/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes]
 gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 651

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 208/705 (29%), Positives = 326/705 (46%), Gaps = 87/705 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET   IDL K G+ +YAED    ++LFA   D+ PV ++D  +   +PQ + 
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYD-FNKEKLPQDIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           EAL +  V   A N+ FER  L        P          + W C+++ +   GLP +L
Sbjct: 62  EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121

Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           + VG  LKL  +KM EG +LI  FC   K         RN P+H  + W  F +Y + DV
Sbjct: 122 EGVGTVLKLKDKKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPDKWSAFIDYNRRDV 181

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I +RL+  P+     + ++ DQ INDRG  +DV       +I    + K+ +EL+
Sbjct: 182 EVELAIKERLKNFPVPDFVWDEYHQDQIINDRGLGIDVDFVKAAIKIDRESKAKIQEELK 241

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +LT   + +   + ++  WL    G+  + L +   + +L +  + T    QV   R +A
Sbjct: 242 ALTG--LENPNSVLQMIGWLREH-GVTTDSLDKKAVKGLLKTVDETT---AQVLKLRQQA 295

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+      E  + +
Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEAREL 355

Query: 344 THLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   ++   D    +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K 
Sbjct: 356 FGTGDLEATELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKV 415

Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           FE G+D+Y  + ++ F V   +     + R  GK+ ELA GY G   A + M        
Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------- 468

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A++        + +  +WR  +  +  
Sbjct: 469 ---------------------------------ALDMGLTEEELQPLVNSWRLANPNIVL 495

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577
            W ++  A +  ++               +  +  +  L + LPSGR L Y    +G+N+
Sbjct: 496 YWWDVDNAVKTAVKELIPTSTHG------IQFEVKRGILFITLPSGRKLAYIKPRIGDNQ 549

Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                 +Y  T T ++  R  +YG K  ENIVQA+SRDILA  M       + IV  VHD
Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQL--KNFKIVGHVHD 607

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  LM   P W   + L+A+GYE   Y+K
Sbjct: 608 EVIIECPIEQ--KLDEVASLMGIAPDWLSDINLRADGYECFFYQK 650


>gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
 gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC
           43734]
          Length = 653

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 217/707 (30%), Positives = 310/707 (43%), Gaps = 87/707 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  LFID ET SP++L   G+  YA+     ++LF +  D  PVE+ D  +   +P+ + 
Sbjct: 1   MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----------IPIHRWICTLVLARSNGLPSA 108
            AL +  V   A N+ FER  L +               +   +W CT+V +   GLP +
Sbjct: 61  SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKPN-HREAWRLFGEYCKGD 164
           L  V   L L  +K   GK+LI +FC             RN P    + W  F  Y + D
Sbjct: 121 LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD 180

Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           V V   I  RL   PL + E + + LDQ +ND G  +D  L           R       
Sbjct: 181 VEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLARA 240

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           + LT   + +     +LK WL    G  L+ LT+     V ++    T Q  +V   R  
Sbjct: 241 QELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKD---EVAAALDTATGQVREVLLLRGE 294

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++S+V K   +      DGR RG LQF GA RTGR++G +   QNLPR         + 
Sbjct: 295 LAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEARS 354

Query: 343 IT---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
           +                   +S  +R+  I ++G + VVAD + IEARV+AW+AGE   L
Sbjct: 355 LVRTGDFEAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGETTTL 414

Query: 400 KAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           +AF  G+DLY  T +R F V   +     + R  GK+  LA GYQGG  A + M      
Sbjct: 415 EAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG----- 469

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                              A+      +  + +  AWR  +  V
Sbjct: 470 -----------------------------------ALRMGLAESELQPLVDAWRAANPSV 494

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGN 575
            +LW +++ A  +TI   +            +    +   + + LPSGR L Y    +G 
Sbjct: 495 VQLWADINAAAIETISTRQPTSVG------ALTFTVESGIMFIRLPSGRRLAYVKPKLGE 548

Query: 576 NRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
           NR    + T       R+  +  TYGGKLTENIVQAV+RD+L   M    +AG+ IV+ V
Sbjct: 549 NRFGGTSITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTYAMHQVAEAGHRIVMHV 608

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           HDEIV ET          +  LM++ P WA GLPL+A+GY    Y K
Sbjct: 609 HDEIVVET---ATATVDEICKLMSTAPDWAAGLPLEADGYACDFYMK 652


>gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 401/677 (59%), Positives = 483/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL E +
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSETV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 226/707 (31%), Positives = 314/707 (44%), Gaps = 87/707 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  LF+D ET SP++LTK G+  YAE  D  V+LF +  D +PV++ D      +P  + 
Sbjct: 1   MHELFVDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLPAEVV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----------IPIHRWICTLVLARSNGLPSA 108
           EAL +  VT  A N+ FER  L A               +   +W CT+V +   GLP +
Sbjct: 61  EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPN-HREAWRLFGEYCKGD 164
           L+ V   L L  +K   GK+LI RFC   +         RN P    + W  F  Y + D
Sbjct: 121 LEQVATVLDLPVRKDSAGKKLITRFCTPARPSVLNQGEMRNLPASDPDGWEQFISYNRRD 180

Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           V V   I  RL   P+   E   + LDQ IND G  +D  L     Q     R       
Sbjct: 181 VEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHRATTLARA 240

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           + LT   + +     +LK WL    G  L+ LT+     V ++    T +  +V   R  
Sbjct: 241 QELTG--LENPNSPIQLKDWLTAH-GTPLQSLTKD---EVAAALDTATGEVREVLQLRGE 294

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++S+V K  T+      DGR RG LQF GA RTGR++G +   QNLPR         + 
Sbjct: 295 LAKSSVKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLCEARD 354

Query: 343 ITHL---PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
           +                   +S  +R+  + ++G + VVAD + IEARV+AW+AGE   L
Sbjct: 355 LVRTGEFEAVELLYDSVPDTLSQLIRTAFVPADGHRFVVADFSAIEARVIAWLAGEATTL 414

Query: 400 KAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           +AF  G+DLY  T +R F V   +     + R  GK+  LA GYQGG  A + M      
Sbjct: 415 QAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG----- 469

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                              A+      +  + +  AWR  +  V
Sbjct: 470 -----------------------------------ALRMGLAESELQPLVDAWRAANPNV 494

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGN 575
            +LW +++ A  + I   +         V  +    +   + + LPSGR L Y    +G 
Sbjct: 495 VQLWADINAAAIEAISTRQPT------GVGALTFTVESGIMFVRLPSGRRLAYVKPKLGE 548

Query: 576 NRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
           NR      T       R+  +  TYGGKLTENIVQAV+RD+L  GM    +AGY IV+ V
Sbjct: 549 NRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGYRIVMHV 608

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           HDEIV ET          +  LM + P WA GLPL A+GY    Y K
Sbjct: 609 HDEIVVET---ATATVDEICELMATAPDWAAGLPLAADGYACDFYMK 652


>gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14]
          Length = 651

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 207/705 (29%), Positives = 323/705 (45%), Gaps = 87/705 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET   IDL K G+ +YAED    ++LFA   ++ PV ++D      +PQ + 
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDL-SKEKLPQDIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACF---------NLDIPIHRWICTLVLARSNGLPSAL 109
           EAL +  V   A N+ FER  L             +  +    W C+++ +   GLP +L
Sbjct: 62  EALVDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSL 121

Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           + VG  LKL  QKM EG +LI  FC   K         RN P+H  + W  F +Y + DV
Sbjct: 122 EGVGTVLKLKDQKMREGADLIRYFCVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRRDV 181

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I +RL+  P+     + +  DQ INDRG  +DV       +I    + ++ +EL+
Sbjct: 182 EVELAIKERLKNFPVPDFVWDEYLQDQIINDRGIGIDVDFVKAAIKIDTESKAQIQEELK 241

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +LT   + +   + ++  WL    G+  + L +   + +L +    T    +V   R +A
Sbjct: 242 ALT--SLENPNSVLQMIGWLREH-GVTTDSLDKKAVKELLKTVDDKT---SKVLKLRQQA 295

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+      E  + +
Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARKL 355

Query: 344 THLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   ++   D    +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K 
Sbjct: 356 FKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGEKWRSKV 415

Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           FE G+D+Y  + ++ F V   +       R  GK+ ELA GY G   A + M        
Sbjct: 416 FELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALKAMG------- 468

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A++        + +  +WRQ +  +  
Sbjct: 469 ---------------------------------ALDMGLSEEELQPLVNSWRQANPNIVL 495

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577
           LW ++  A +  ++               +  +     L + LPSGR L Y    +G N+
Sbjct: 496 LWWDVDNAVKTAVKEQIPTSTHG------IQFEVRSGILFITLPSGRKLAYIKPRIGENQ 549

Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                 +Y  T T ++  R  +YG K  ENIVQA+SRDILA  +       + IV  VHD
Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSLKQL--KEFKIVGHVHD 607

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P   E     +  LM   P W   + L+A+GYE   Y+K
Sbjct: 608 EVIIECP--MEQKIDKIASLMGIAPDWMSDINLRADGYECLFYQK 650


>gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 401/677 (59%), Positives = 483/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFC G      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010]
          Length = 687

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 260/692 (37%), Positives = 379/692 (54%), Gaps = 26/692 (3%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            + +  +  HNS+F+RTVL+     L  P+ RW  T+V A ++GLP +L  + E L +  
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121

Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            K   +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            + +  EL  W+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++  
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L+
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353
           + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L         
Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408
            + +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF         DL
Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    
Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALP 480

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
           N   +   +A+++     +    + + +     AC+ +K+ WR+ H    + W EL +  
Sbjct: 481 NIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583
              I   +  +         + +++D   L + LPSGR++ Y        N +Y+  N+ 
Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
           +R+  R  TYGGKL ENI QA +RDILA  M     AGY IVLTVHDE++ E PDT++FN
Sbjct: 595 SRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFN 654

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              L  L++++P WA  +PL A G+E+  Y+K
Sbjct: 655 DKALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 649

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 213/704 (30%), Positives = 317/704 (45%), Gaps = 85/704 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M +L +D ET SP +L   G+ +YAED    ++LF +  D  P ++ D      +P  + 
Sbjct: 1   MRSLSLDLETFSPTNLATAGVYRYAEDEAFRILLFGYSIDGAPAKVIDLARGEPIPPGIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           +AL +  VT  A N+ FER  + A      P            W CT+V A S GLP +L
Sbjct: 61  QALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLGLPMSL 120

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
               +AL+L  +K   G++LI RF               +    W+ +  Y + DV V  
Sbjct: 121 DGAAKALRLPIEKDPAGQKLIRRFSIPGKD--GIRVLPSDDPVGWQQYISYNRRDVDVEV 178

Query: 170 EIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           ++  R    P+   E E ++LDQ IND G  +D  LA    ++    R       + LT 
Sbjct: 179 QLASRLARNPMLEAEWETYWLDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLARAQQLTG 238

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +LK WL    G  LE LT+T  +  L +   +T    +V   R   SRS+
Sbjct: 239 --LENPNSPIQLKDWL-AAHGCELESLTKTEVEAALET---VTGDVAEVLRLRQDLSRSS 292

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---T 344
           V K   ++    SD R RG +Q++GA RTGR++G +   QNLPR         + +    
Sbjct: 293 VKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPDLASARSLLNAG 352

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           +              +S  +R+  I S+  + +VAD + IEARVLAW+AGE+  L+AF  
Sbjct: 353 NSDALELLYSPLPDTLSQLIRTAFIPSKDHRFIVADFSAIEARVLAWLAGEEGTLQAFRE 412

Query: 405 GEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNT 461
           G+DLY  T +R F V   +     + R  GK+  LA GY G   A + M +   GL+ + 
Sbjct: 413 GKDLYCQTASRMFGVPVEKHGANSELRQKGKIAVLACGYGGSVGALKAMGALRMGLDESE 472

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                     + +  AWR  +  V + W
Sbjct: 473 L-----------------------------------------KPLVDAWRDANPMVVQFW 491

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY 579
           +++ QA   T+E        +      +++      L + LPS R L Y    +G NR  
Sbjct: 492 HDIEQAAITTVETRTPTQVGR------IHLSYRSGCLFIALPSRRELCYPRPRLGENRFG 545

Query: 580 LNT--------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
           + +        TTR+     TYGGKLTEN+VQA +RD+L   M +   AG+ IV+ +HDE
Sbjct: 546 MTSILFDGVDGTTRKWGPIETYGGKLTENLVQATARDLLTHAMHHVDAAGHRIVMHIHDE 605

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           IV + P     +   +  LMT  P+WA GLPL A+GYE   Y K
Sbjct: 606 IVVDEPTDGA-SVEDIVTLMTRLPTWADGLPLDADGYECGFYMK 648


>gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
 gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 400/677 (59%), Positives = 482/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFC G      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPD   F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDIPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+KRYRK
Sbjct: 659 KGLPLKAEGYEAKRYRK 675


>gi|332522757|ref|ZP_08399009.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
 gi|332314021|gb|EGJ27006.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
          Length = 653

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 204/706 (28%), Positives = 321/706 (45%), Gaps = 87/706 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCV-HDPVMPQVL 57
           +  L ID ET   IDL K G+ +YAED    ++LFA   D+ PV ++D       +PQ +
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDESFELLLFAVSVDNGPVTVYDLDLTKEKLPQDI 62

Query: 58  KEALENTDVTIVAHNSYFERTVLKACF---------NLDIPIHRWICTLVLARSNGLPSA 108
            E L +  V   A N+ FER  L             +  +    W C+++ +   GLP +
Sbjct: 63  LETLVDNSVIKWAFNASFERICLSNWLKKYHPDLLLDGFLSPVSWRCSMIWSAYLGLPLS 122

Query: 109 LKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGD 164
           L+ VG  LKL  QKM EG +LI  FC   K         RN P+H    W  F +Y + D
Sbjct: 123 LEGVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHASNKWSTFIDYNRRD 182

Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           V V   I +R++  P+ S     ++ DQ IND G  +DV       +I    + K+  EL
Sbjct: 183 VEVELAIKERVKNFPVPSFVWNEYHQDQIINDHGIGIDVDFVKAALKIDGESKAKIQAEL 242

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           ++LT   + +   + ++ +WL    G+  + L +   + +L +  + T    QV   R +
Sbjct: 243 KALTG--LENPNSVLQMISWLREH-GVATDSLDKNAVKELLKTVDETT---AQVLKLRQQ 296

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A++S+V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+      +  + 
Sbjct: 297 AAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARD 356

Query: 343 ITHLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
           +       +++   D    +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K
Sbjct: 357 LFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 416

Query: 401 AFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            FE G+D+Y  + ++ F V   +     + R  GK+ ELA GY G   A + M       
Sbjct: 417 VFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------ 470

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A++        + +  +WR  +  + 
Sbjct: 471 ----------------------------------ALDMGLSKEELQPLVNSWRLANPNIV 496

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
             W ++  A +  ++               +  +     L + LPSGR L Y    +G+N
Sbjct: 497 LYWWDVDNAVKTAVKELIPTSTHG------IQFEVKSGILFITLPSGRKLAYIKPRIGDN 550

Query: 577 RSYLNT-------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           +    +       T ++  R  +YG K  ENIVQA+SRDILA  M       + IV  VH
Sbjct: 551 QFGGESVTYEGSGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQL--KDFRIVGHVH 608

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DEI+ E   +   N   +  LM   P W   + L+A+GYE   Y+K
Sbjct: 609 DEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECFFYQK 652


>gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus]
          Length = 675

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 400/677 (59%), Positives = 482/677 (71%), Gaps = 4/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +DD PV+LWD      MP  L + 
Sbjct: 1   MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL  S 
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFC G      YD  + NH +AW+LFGEYCK DV  TRE+FKRL PL
Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E++LW LDQTINDRGY +D+ L   L +++  ER KLD+++  LT G++ SSR    
Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L+ +LFL TG+ L D++E T + +LS +  +T  A  +  NR+ +S SA+LKLNTL EA+
Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR  RS E L Q I  L    T   DPL 
Sbjct: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF  GED+YVTTYA++FN
Sbjct: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +V+K+QRAIGKVMELALGYQGGAK F+ MAS  GL+L  F+  VK+ S  E+WE A
Sbjct: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           E+   WMQ+ +PE A++D  IGTACE VKKAWR KH  V +LW +L + F   ++ G +I
Sbjct: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+  +VP + M++ K ++ ++LPS R LVY DV  + SYLNT T QL RE TYGGKLT
Sbjct: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT  F+   L  LMT NPSWA
Sbjct: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658

Query: 659 KGLPLKAEGYESKRYRK 675
           KG PLKAEGYE+KRYRK
Sbjct: 659 KGFPLKAEGYEAKRYRK 675


>gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
 gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains
           [Escherichia coli O55:H7 str. CB9615]
          Length = 687

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 259/692 (37%), Positives = 380/692 (54%), Gaps = 26/692 (3%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            + +  +  HNS+F+RTVL+     L  P+ RW  T+V A ++GLP +L  + E L +  
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 121

Query: 121 QKME--EGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            K +  EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL  
Sbjct: 122 DKAKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            + +  EL  W+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++  
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L+
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PHLPSAVKELLAIRLQASTTSTSKYKALM 300

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT--SD 353
           + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L         
Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCAGLLF 360

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408
            + +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF         DL
Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    
Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALP 480

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
           N   +   +A+++     ++     + +     AC+ +K+ WR+ H    + W EL +  
Sbjct: 481 NIPRDVIREAKSWYNESVKHKSTFGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583
              I   +  +         + +++D   L + LPSGR++ Y        N +Y+  N+ 
Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMGVNSY 594

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
           +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E PDT++FN
Sbjct: 595 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFN 654

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 655 DKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 673

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 398/677 (58%), Positives = 487/677 (71%), Gaps = 6/677 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  LFID ETRSP  L K G+  YAE+  + L A+  +D  ++LWDC  +PVMP  L + 
Sbjct: 1   MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L++  V  VAHNS FER + K   N+ IP  RWICT  LAR NGLP++LK    ALK   
Sbjct: 61  LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              KMEEGK LIARFCKG   E  YD  + NH +AW+LFGEYCK DV  TRE++KRL PL
Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           S  E+ LW LDQ INDRGY +D+ L   L +++  ER KLD+EL++LT+G++ SSR  + 
Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDL 240

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           L  +LFL  GL L D+ E+T    LS    +T +A  + NNR+ +S+SA+LKLNTL  A+
Sbjct: 241 LNKYLFLYMGLDLPDMAESTIATALSQ-PNITQRAKDILNNRLSSSQSAILKLNTLSGAV 299

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           + D RLRGTLQF GASRTGRWSGCVF PQNLPRP+ SHE +++ I           DPL+
Sbjct: 300 SPDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIESSNFPS---DDPLR 356

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
             SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGEQWKL AF  GED+Y T Y+++FN
Sbjct: 357 FASDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKAFN 416

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           +  + VTKDQRAIGKVMELALGYQGGA+ FQ MAS  GL+L  F+  +K  +  ++WE A
Sbjct: 417 IPLSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWEQA 476

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           +  C WMQE +PE A+ D FIGTACE VK AWR KH  V +LW +  +AF+  I++G++I
Sbjct: 477 QRRCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGRSI 536

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            AR+   VP + MKK   N+ + LPS R LVYRDV ++RSYLNT T Q+ RE TYGGKLT
Sbjct: 537 SARRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLT 596

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
           ENIVQA+SRDILA GM+NAT+AGYDIVLTVHDEIVCETPDT EF++  L  LMT NP WA
Sbjct: 597 ENIVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPKWA 656

Query: 659 KGLPLKAEGYESKRYRK 675
           KGLPLKAEGYE+ RYRK
Sbjct: 657 KGLPLKAEGYEALRYRK 673


>gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes]
 gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes]
 gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 651

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 208/705 (29%), Positives = 322/705 (45%), Gaps = 87/705 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET   IDL K G+ +YAED    ++L A   D+ PV ++D  +   +PQ + 
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYD-FNKEKLPQDIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           EAL    V   A N+ FER  L        P            W C+++ +   GLP +L
Sbjct: 62  EALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSL 121

Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           + VG  LKL  QKM EG +LI  FC   K         RN P+H    W  F +Y + DV
Sbjct: 122 EGVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDV 181

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I +R++  P+ S     ++ DQ INDRG  +DV       +I    + K+  EL+
Sbjct: 182 EVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAELK 241

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +LT   +     + ++ +WL    G+  + L +   + +L +  + T    QV   R +A
Sbjct: 242 TLTG--LEKPNSVLQMISWLREH-GVATDSLDKKAVKELLKTVDETT---AQVLKLRQQA 295

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+      +  + +
Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEAREL 355

Query: 344 THLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                  +++   D    +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K 
Sbjct: 356 FRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKV 415

Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           FE G+D+Y  + ++ F V   +     + R  GK+ ELA GY G   A + M        
Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------- 468

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A++        + +  +WRQ +  +  
Sbjct: 469 ---------------------------------ALDMGLSEEELQPLVNSWRQANPNIVL 495

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577
            W ++  A +  ++       +       +  +     L + LPSGR L Y    +G N+
Sbjct: 496 YWWDVDNAVKTAVKELLPTSTQ------NIQFEVKSGILFITLPSGRKLAYIKPRIGENQ 549

Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                 +Y  T T ++  R  +YG K  ENIVQA+SRDILA  M       + IV  VHD
Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLND--FKIVGHVHD 607

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  LM   P W   + L+A+GYE   Y+K
Sbjct: 608 EVIIECPIEQ--KLDEVASLMGIAPYWLSDINLRADGYECFFYQK 650


>gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
 gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli
           IAI1]
          Length = 687

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 260/692 (37%), Positives = 379/692 (54%), Gaps = 26/692 (3%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGVGIPHGLYEAI 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            + +  +  HNS+F+RTVL+     L  P+ RW  T+V A ++GLP +L  + E L +  
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121

Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            K   +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            + +  EL  W+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++  
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L+
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353
           + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L         
Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408
            + +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF         DL
Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    
Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALP 480

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
           N   +   +A+++     +    + + +     AC+ +K+ WR+ H    + W EL +  
Sbjct: 481 NIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583
              I   +  +         + +++D   L + LPSGR++ Y        N +Y+  N+ 
Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
           +R+  R  TYGGKL ENI QA +RDILA  M     AGY IVLTVHDE++ E PDT++FN
Sbjct: 595 SRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFN 654

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              L  L++++P WA  +PL A G+E+  Y+K
Sbjct: 655 DKALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis]
 gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 651

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 209/705 (29%), Positives = 330/705 (46%), Gaps = 87/705 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET   IDL K G+ +YAED    ++LFA   D+ PV ++D  +   +PQ + 
Sbjct: 3   IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYD-FNKEKLPQDIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           EAL +  V   A N+ FER  L        P          + W C+++ +   GLP +L
Sbjct: 62  EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121

Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           + VG  LKL  +KM EG +LI  FC   K         RN P+H    W  F +Y + DV
Sbjct: 122 EGVGTVLKLKDKKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDV 181

Query: 166 TVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I +RL+  P+     + ++ DQ INDRG  +D+       +I    + K+ +EL+
Sbjct: 182 EVELAIKERLKNFPVPDFVWDEYHQDQIINDRGIGIDIDFVKAAIKIDSESKAKIQEELK 241

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +LT   + +   + ++  WL    G+  + L +   + +L +  + T    QV   R +A
Sbjct: 242 ALT--RLENPNSVLQMIGWLREH-GVTTDSLDKKVVKELLKTADETT---AQVLKLRQQA 295

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   ++  +  DGR RG  QF GA+RTGRW+G +   QNLP+      E  + +
Sbjct: 296 AKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLEEAREL 355

Query: 344 THLPTSITSDP--DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   ++   D    +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+ K 
Sbjct: 356 FGTGDLEATEFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKV 415

Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           FE G+D+Y  + ++ F V   +     + R  GK+ ELA GY G   A + M        
Sbjct: 416 FEQGKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGSVGALKAMG------- 468

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A++          +  +WRQ +  +  
Sbjct: 469 ---------------------------------ALDMGLKDKELRPLVDSWRQANPNIVL 495

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577
            W ++ +A +  I+               +  + +K  L + LPSGR L Y    +G N+
Sbjct: 496 FWWDVDRAVKTAIKQHIQTETHG------IQFEVNKGMLSITLPSGRKLAYVKPKIGENQ 549

Query: 578 ------SYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                 +Y  T T ++  R  +YG K  ENIVQA+SRDILA  M    +  ++IV  VHD
Sbjct: 550 FGGESITYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAMKQLQE--FNIVGHVHD 607

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E     + +   + +LM   P W   + L+A+GYE   Y+K
Sbjct: 608 EVIIEC--GIDQSLDEIAYLMGIAPEWMTDIKLRADGYECSFYQK 650


>gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
 gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470]
          Length = 656

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 199/701 (28%), Positives = 299/701 (42%), Gaps = 72/701 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +D+ K G+ KY E     ++LFA+ +D   V + D      +P  + 
Sbjct: 1   MKHLSIDIETFSDVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIPDSVI 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L N +V   A+N+ FE T L           +W CT++     G P+ L  +G AL +
Sbjct: 61  SDLNNPEVIKHAYNASFEITGLNRY-GYATSPEQWRCTMLHGLYLGYPAGLAFLGAALGI 119

Query: 119 SSQK--MEEGKELIARFC---KGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIF 172
              K  +  GK LI  FC   K         RN P H    W LF EY   DV    E +
Sbjct: 120 PEDKRKLSTGKALIRYFCVPCKPTKRNGGRTRNLPKHDIDKWHLFKEYNAQDVVTEMEDY 179

Query: 173 KR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +R    P+    Q+ W +D  +N RG  +D+ L      I D  +T+L ++   +T    
Sbjct: 180 RRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRGALAIDDQHKTELVEKAIQITGLT- 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L TW+   + L LE LT+ T    L   +       +V + R   ++S++ K
Sbjct: 239 -NPNSRNQLLTWINDNSDLKLEKLTKETVAESLQIAEDQ---VAEVLHIRRALAKSSISK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
             ++  A+ +DGR+RG LQF GA+RTGRW+G +   QNLP       +    +     + 
Sbjct: 295 YESMKNAVCADGRIRGVLQFYGANRTGRWAGRLVQVQNLPHDVPVAMDTAIRLVKNGNAR 354

Query: 351 ---TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                       +S  +R+  +A EG  L V+D + IEARVL+W+A E+W+   F  G D
Sbjct: 355 GVKLMYGHISTSLSHLIRAAFVAPEGSLLCVSDFSAIEARVLSWLADEKWRQDVFAKGGD 414

Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + +  F V   +       R  GKV ELALGYQGG  A   M +            
Sbjct: 415 IYCASASSMFGVPVEKHGINGHLRQKGKVAELALGYQGGPPALITMGALKQ--------- 465

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                   +   WR  + R+   W ++ 
Sbjct: 466 -------------------------------GLTEDELPDIVHRWRGANPRICGFWYDVD 494

Query: 526 QAFEQTIENGKAIIARKRRDV-PLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRS---- 578
            A    + + + +       +     +    + L + LPSGR L Y    +  N+     
Sbjct: 495 GAALSVMSDARPVGLPHGILISRECNLLYGYDYLTIRLPSGRKLYYPQPYINENQFGKPA 554

Query: 579 --YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
             Y      + +   TYGGKL ENI QA++RD LA  +    KAGY  ++ +HDE+V E 
Sbjct: 555 LHYRVQAGIKWSHTSTYGGKLVENITQAIARDCLALAINRLVKAGYKPLMHIHDEVVLEV 614

Query: 637 PDT--DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P     E     +  +M +   WA GL L A+G+ S  Y K
Sbjct: 615 PKDKIHEDEIDRINQIMCAPIPWAPGLLLNADGFISPYYTK 655


>gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 653

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 218/707 (30%), Positives = 307/707 (43%), Gaps = 87/707 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  LFID ET SP++L   G+  YA+     ++LF +  D  PVE+ D  +   +P+ + 
Sbjct: 1   MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----------IPIHRWICTLVLARSNGLPSA 108
            AL +  V   A N+ FER  L +               +   +W CT+V +   GLP +
Sbjct: 61  SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKPN-HREAWRLFGEYCKGD 164
           L  V   L L  +K   GK+LI +FC             RN P    + W  F  Y + D
Sbjct: 121 LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD 180

Query: 165 VTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           V V   I  RL   PL + E + + LDQ +ND G  +D  L           R       
Sbjct: 181 VEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLARA 240

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           + LT   + +     +LK WL    G  L+ LT+     V ++    T Q  +V   R  
Sbjct: 241 QELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKD---EVAAALDTATGQVREVLLLRGE 294

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++S+V K   +      DGR RG LQF GA RTGR++G +   QNLPR         + 
Sbjct: 295 LAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEARS 354

Query: 343 IT---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
           +    +              +S  +R+  I ++G + VVAD + IEARV+AW+AGE   L
Sbjct: 355 LVRTGNYDAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEATTL 414

Query: 400 KAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           +AF  G+DLY  T +R F V   +     + R  GK+  LA GYQGG  A + M      
Sbjct: 415 EAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG----- 469

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                              A+      +  + +  AWR  +  V
Sbjct: 470 -----------------------------------ALRMGLAESELQPLVDAWRAANPNV 494

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGN 575
            +LW +++ A  + I                +    +   + + LPSGR L Y    +G 
Sbjct: 495 VQLWADINAAAIEAISTRLPTSVG------ALTFTVESGIMFIRLPSGRRLAYVKPKLGE 548

Query: 576 NRSYLN-------TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
           NR           TT R+  +  TYGGKLTENIVQAV+RD+L  GM    +AG+ IV+ V
Sbjct: 549 NRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGHRIVMHV 608

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           HDEIV ET          +  LM   P WA GLPL A+GY    Y K
Sbjct: 609 HDEIVVET---ATATVDEICKLMAITPDWAAGLPLAADGYACDFYMK 652


>gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
 gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111]
          Length = 651

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 206/705 (29%), Positives = 314/705 (44%), Gaps = 87/705 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET   +DL K G+  YAED    ++L A   D+ PV ++D      +P  + 
Sbjct: 3   IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLT-KENLPDQIL 61

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
           +AL N  +   A N+ FER  L        P          + W C++V +   GLP +L
Sbjct: 62  QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPLSL 121

Query: 110 KAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDV 165
           + VG  LKL  QK++EG ++I  FC   K         RN P+H  + W  F  Y K DV
Sbjct: 122 EGVGTVLKLKEQKLKEGGDVIRYFCLPYKPTKINGGRKRNFPHHAPDKWAAFINYNKRDV 181

Query: 166 TVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I  +L   P+     E ++ DQ IND G  +DV        I +  ++K+ +EL+
Sbjct: 182 EVELAIKNKLRNHPVPDFLWEEYHQDQNINDSGIGIDVDFVKAAITIDEESKSKIQEELK 241

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
            LT   + +   + ++  WL    G+    L +   + +L      T    +V   R +A
Sbjct: 242 ELTG--LENPNSVLQMIGWLREH-GVTTNSLDKKAVKELLKVVDAKT---TKVLKLRQQA 295

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +V  +  DGR RG  QF GA+RTGRW+G +   QNLP+      +  + +
Sbjct: 296 AKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARDL 355

Query: 344 THLPTSITSD--PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   +D        +S  +R+  + S+GKK +V D + IEARVL+ +AGE+W+   
Sbjct: 356 FKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSMV 415

Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           FE G+D+Y  + ++ F V   +     D R  GK+ ELA GY G   A + M +      
Sbjct: 416 FEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAI----- 470

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                              +        + +  +WRQ +  +  
Sbjct: 471 -----------------------------------DMGLDEQELQPLVDSWRQANPNIVL 495

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV------ 573
            W ++ +A +  I+  K            +  K  K  L + LPSGR L Y         
Sbjct: 496 FWWDVDKAVKTAIKYQKQTETHG------IQFKVRKGMLFITLPSGRKLAYVKPKMGENQ 549

Query: 574 --GNNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
             G + +Y  T T ++  R  +YG K  ENI+QA+SRDILA  M       + IV  VHD
Sbjct: 550 FGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQL--KDFRIVGHVHD 607

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           EI+ E   +   N   +  LM   P W   + L+A+GYE   Y+K
Sbjct: 608 EIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650


>gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11]
 gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11]
 gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1]
          Length = 687

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 259/692 (37%), Positives = 378/692 (54%), Gaps = 26/692 (3%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAI 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
              +  +  HNS+F+RTVL+     L  P+ RW  T+V A ++GLP +L  + E L +  
Sbjct: 62  AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121

Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            K   +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            + +  EL  W+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++  
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L+
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353
           + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L         
Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408
            + +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF         DL
Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    
Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALP 480

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
           N   +   +A+++     +      + +     AC+ +K+ WR+ H    + W EL +  
Sbjct: 481 NIPRDVIREAKSWYNESVKRKSTFGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583
              I   +  +         + +++D   L + LPSGR++ Y        N +Y+  N+ 
Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
           +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E PDT++FN
Sbjct: 595 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFN 654

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 655 DKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188]
 gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
          Length = 653

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 229/703 (32%), Positives = 324/703 (46%), Gaps = 79/703 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S  DLTK G+ KYA+  +  ++LFA+  D  PVE  D      +P  + 
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL + +V  +A N+ FER  L     +   +   +W CT+V A   GLP++L    + L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            +  QK   G +LI  F   CK      +  RN P H  E W+ F EYC  DV V   I 
Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P+   E +L+ LDQ INDRG  +D  LA     I+         E++ LT   +
Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTG--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   L +LK WL  E G   E L +    + L+    L     +V   R+  S S+  K
Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  A  SD R+ G LQF GA+RTGRW+G +   QNLPR   S  +  + +       
Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355

Query: 351 TS---DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  D    +   +R+ ++A EG + +V+D + IEARV+AW A + W L+ F T   
Sbjct: 356 GIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHGK 415

Query: 408 LYVTTYARSFNV-------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           +Y  T A+ F++         +   KD R  GKV  LALGYQGG  A + M         
Sbjct: 416 IYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG-------- 467

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A+E+       + +   WR  + R+   
Sbjct: 468 --------------------------------ALENGIEEHELQDIVDRWRTANKRIKNF 495

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR--- 577
           W+E  +A    ++NG       ++    +   K    L + LPSGR L Y      +   
Sbjct: 496 WHETQKAVIDCLQNG-----GIKKGPRGLKFYKKAGFLFIQLPSGRKLAYAKAHLEQGDY 550

Query: 578 ----SYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                Y     +   T + TYGGKL ENIVQA +RD+LAE M+   KAGY IV  VHDE 
Sbjct: 551 GPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVHDEA 610

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V E P+ +  +   +  +M+  P WA+GLPL AEG+E+K Y K
Sbjct: 611 VAEVPEGE-KSIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 653

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 215/701 (30%), Positives = 330/701 (47%), Gaps = 78/701 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID ET S +D+   G  +YAE+  ++LFA+ +DD PV++ D   +  +P  +  AL 
Sbjct: 2   ILSIDLETYSALDIKTVGGYRYAENAEILLFAYAWDDTPVQIVDLTAEETIPADVLSALT 61

Query: 63  NTDVTIVAHNSYFERTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + D+   A N+ FERTVL    + +      +    W CT+V A + GLP +L  V + L
Sbjct: 62  DNDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSCTMVHALTLGLPGSLAEVSKTL 121

Query: 117 KLSS--QKMEEGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTRE 170
           KL    +KM  G +LI  F   CK         RN P +  E W  F  YC  DV   RE
Sbjct: 122 KLGEEKEKMSVGTQLITYFCKPCKPTKSNGGRTRNLPNDAPEKWATFKAYCVRDVEAERE 181

Query: 171 IFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           + +RL   P+   E+ LW LDQ INDRG  +D  LA          R ++  E  +L+  
Sbjct: 182 VRRRLSGYPVPETERALWALDQRINDRGVRIDEILAQNAIAFDSAFRAEVTAEASALSG- 240

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
            + +    E+LK W++ + G     LT+ T   ++ + K  T     +   +M  S+++V
Sbjct: 241 -LENPNSGEQLKHWIYEQEGARPLSLTKETIPELIETAKSET--VKTMLQLKMLLSKTSV 297

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---TH 345
            K   +V+A  SDGR  G LQF GA+RTGRW+G +   QNLPR + +  +  + +     
Sbjct: 298 KKYEAMVQAQCSDGRAHGLLQFYGANRTGRWAGRLVQVQNLPRNTMAELDDARALLRCGD 357

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                    +P  ++S  +R+  I + G +  VAD + IEARV+AW+AGE+W++  F  G
Sbjct: 358 TDALEMLFDNPPDVLSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWRMDVFADG 417

Query: 406 EDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            D+Y  + ++ F+V   +       R  GKV ELALGY GG  A ++M +          
Sbjct: 418 GDIYCASASKMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVSALKRMGADK-------- 469

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                                   E +K++WR+   R+  LW++
Sbjct: 470 --------------------------------LGLTDAELEEIKQSWRKASPRIVRLWSD 497

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN------- 576
              A  + +     +  +       + ++     L + LPSGRSL Y             
Sbjct: 498 FESAALEAVRERSTVSLQ-----HGIKLECRSGILFIRLPSGRSLAYVKPRIEYEESFDR 552

Query: 577 --RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              +Y         ++ TYGG+L EN +QA++RD LA  M     AGY IV+ +HDE+V 
Sbjct: 553 EGLTYYGRDVGGWGKQRTYGGRLVENAIQAIARDCLAVAMTRLEAAGYPIVMHIHDEVVV 612

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ETP +     + +  +M+    WA GL L A+GY +  Y+K
Sbjct: 613 ETPRS-VDCLADVCEIMSKPVDWAPGLVLTADGYTTNYYKK 652


>gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605]
 gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605]
          Length = 687

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 258/692 (37%), Positives = 380/692 (54%), Gaps = 26/692 (3%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 3   NILWGDLETYCDIPINN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            + +  +  HNS+F+RTVL+     L  P+ RW  T+V A ++GLP +L  + E L +  
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 121

Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            K   +EGK LI  FCK         R     H E WR F  Y   D+   RE+ KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKRLPK 181

Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            + +  EL  W+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++  
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L+
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353
           + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L         
Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408
            + +++ S  +R C+IA  GKK+VV+DL+ IE R+LAW+AGE+WKL AF         DL
Sbjct: 361 DNIMELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    
Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALP 480

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
           N   +   +A+++     +    + + +     AC+ +K+ WR+ H    + W EL +  
Sbjct: 481 NIPRDVIREAKSWYGESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583
              I   +  +         + +++D   L + LPSGR++ Y        N +Y+  N+ 
Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
           +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E+PDT++FN
Sbjct: 595 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFN 654

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 655 DKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 651

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 213/697 (30%), Positives = 325/697 (46%), Gaps = 78/697 (11%)

Query: 9   ETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66
           ET S +DL  CG+ KY  +ED  ++LFA+  DD PV++ D      +P  + + ++   +
Sbjct: 2   ETYSSVDLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLDLIDEPAI 61

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SSQKME 124
              AHN+ FER  L       +   +W C+++ A   GLP++LK VG  L L    QKM 
Sbjct: 62  IKYAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKMR 121

Query: 125 EGKELIARF---CKGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFKRLE--PL 178
            GK LI+ F   CK         RN P +  E W+LF +YC  DV   REI  +L+  P+
Sbjct: 122 IGKTLISYFCKPCKPTRVNGQRSRNTPADAPEKWQLFKDYCHRDVETEREISNKLDKFPI 181

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
            + E ELW  DQ +ND G  +D+ + HT+         +L  E E +T G     + + +
Sbjct: 182 PASEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNG--IGPKKIAQ 239

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           LK W+  +    +E L +     +L     ++P+  +V   R  + ++++ K   +  ++
Sbjct: 240 LKEWICRKEDRSIESLDKDAVIELLKD-SSISPETRRVLQIRQESGKTSITKYAAIQRSV 298

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD---PD 355
            +D RL G LQF GA+RTGRW+G +F PQNLPR + +  EL + +       + D     
Sbjct: 299 CNDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESLDMLYGS 358

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
             Q+ S  +R+ VI   G    +AD + IEAR+ AW   E+W+ + F T   +Y  + A+
Sbjct: 359 YNQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIYEASAAQ 418

Query: 416 SFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            F+V    VTK  D R  GKV ELALGY GG  A ++M                      
Sbjct: 419 MFHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMG--------------------- 457

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                +        + +   WR     + ++W  +  A    + 
Sbjct: 458 -------------------GADMGLSEDEMQDIVNKWRLASPNIKKMWYRVQDAAYTAVR 498

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV-------GNNRSYLNTT--- 583
             K     +   V  V        L   LPSGR L Y          G+  +Y       
Sbjct: 499 ERK-----RVSVVHGVRYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDELTYEGYGSDQ 553

Query: 584 ----TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP-D 638
               T++  R+ T+GGKL EN++QA++RD LA+ M+     GY I++ +HDE+V E P +
Sbjct: 554 DGKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDDVGYKIIMHIHDEVVVEVPSE 613

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           T E     +  +M     WA GL L A+G+ S+ YRK
Sbjct: 614 TAESCLIDIERIMGEPIPWAPGLILTADGFISEYYRK 650


>gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171]
 gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171]
          Length = 687

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 259/692 (37%), Positives = 379/692 (54%), Gaps = 26/692 (3%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            + +  +  HNS+F+RTVL+     L  P+ RW  T+V A ++GLP +L  + E L +  
Sbjct: 62  ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121

Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            K   +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            + +  EL  W+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++  
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L+
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353
           + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L         
Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408
            + +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF         DL
Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    
Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALP 480

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
           N   +   +A+++     +    + + +     AC+ +K+ WR+ H    + W EL +  
Sbjct: 481 NIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583
              I   +  +         + +++D   L + LPSGR++ Y        N +Y+  N+ 
Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSY 594

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
           +R+  R  TYGGKL ENI QA +RDILA  M     AGY IVLTVH+E++ E PDT++FN
Sbjct: 595 SRKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHNEVITEAPDTEDFN 654

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              L  L++++P WA  +PL A G+E+  Y+K
Sbjct: 655 DKALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686


>gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718]
 gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718]
          Length = 687

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 260/692 (37%), Positives = 378/692 (54%), Gaps = 26/692 (3%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
              +  +  HNS+F+RTVL+     L  P+ RW  T+V A ++GLP +L  + E L +  
Sbjct: 62  AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121

Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            K   +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            + +  EL  W+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++  
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L+
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353
           + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L         
Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408
            + +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF         DL
Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    
Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALP 480

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
           N   +   +A+++     +    + + +     AC+ +K+ WR+ H    + W EL    
Sbjct: 481 NIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELECTV 539

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583
              I   +  +         + +++D   L + LPSGR++ Y        N +Y+  N+ 
Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSY 594

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
           +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E+PDT++FN
Sbjct: 595 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFN 654

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 655 DKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus
           sanguinis SK115]
          Length = 645

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 217/698 (31%), Positives = 326/698 (46%), Gaps = 77/698 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +DLTKCG+ +Y +     ++LFA+  D+   ++ D      +P+ + 
Sbjct: 1   MRTLSIDIETYSDVDLTKCGVYRYVDSPQFEILLFAYKIDEENTQIVDLAQGEELPKGIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FER  L       +    W CT V A S GLP +L+ VG  L +
Sbjct: 61  SALRDDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAASLGLPLSLEGVGRVLNI 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QKM+EG+ LI  F   C+      + +RN P+H  E W LF  YCK DV V + I KR
Sbjct: 121 EEQKMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELFKRYCKRDVEVEQAIRKR 180

Query: 175 L--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   PL   EQ L+ LDQ INDRG  VD  L           + ++ Q    L+   + +
Sbjct: 181 LSNYPLLESEQLLYQLDQAINDRGIAVDQELVSQAILGDLSYKEQVTQRAYELSG--LDN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + +LK WL    G+ ++ L +   + V    K++  + +++   R+  S+++V K  
Sbjct: 239 PNSVSQLKGWL-ENQGVFMDSLGK---KDVAKQLKEVDGEILEMLKLRLLMSKTSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349
            +   + SD R+ G LQF GA+RTGRW+G +   QNLP+      +L + +     L   
Sbjct: 295 AMERCVCSDDRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLDLARTLVKDGQLKAL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                +   ++S+ +R+  +   G + +VAD A IEARVLAW++GE W+L+ FE G D+Y
Sbjct: 355 DLLYDNVPNVLSELIRTAFVPKSGHQFIVADFAAIEARVLAWLSGETWRLEVFEQGGDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLV 466
             + A  F V   +       R  GK+ ELALGY G   A + M +   GL+        
Sbjct: 415 CASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALDMGLDEE------ 468

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                + +   WR  +  +   W  + +
Sbjct: 469 -----------------------------------ELQPLVNQWRMANPHIVAFWWVIDK 493

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT-- 584
           A ++  E  +         V  + +        + LPSGR L Y       +        
Sbjct: 494 ASKEVYETREPQ------KVGNLLLYYQAGMFFIALPSGRKLAYVKPRMELNAFGKPGLT 547

Query: 585 -------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                  ++ +R  TYG KL ENIVQ ++RD+LA GMM   K   DIVL VHDE V E  
Sbjct: 548 YEGIGENKKWSRIDTYGPKLVENIVQGIARDLLAHGMMQLQKQELDIVLHVHDEAVVEVK 607

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + +  +   +  L  + P WA+GLPL+A+GY  + Y+K
Sbjct: 608 EGEA-SVEEVCQLFATLPDWAEGLPLRADGYACQFYQK 644


>gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
          Length = 653

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/703 (32%), Positives = 323/703 (45%), Gaps = 79/703 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S  DLTK G+ KYA+  +  ++LFA+  D  PVE  D      +P  + 
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL + +V  +A N+ FER  L     +   +   +W CT+V A   GLP++L    + L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKHLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            +  QK   G +LI  F   CK      +  RN P H  E W+ F EYC  DV V   I 
Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P+   E +L+ LDQ INDRG  +D  LA     I+         E+++LT   +
Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTG--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   L +LK WL  E G   E L +    + L+    L     +V   R+  S S+  K
Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  A  SD R+ G LQF GA+RTGRW+G +   QNLPR   S  +  + +       
Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355

Query: 351 TS---DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +    +   +R+ ++A EG + +V+D + IEARV+AW A + W L  F T   
Sbjct: 356 GIELMYENVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLDVFRTHGK 415

Query: 408 LYVTTYARSFNV-------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           +Y  T A+ F++         +   KD R  GKV  LALGYQGG  A + M         
Sbjct: 416 IYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG-------- 467

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A+E+       + +   WR  + R+   
Sbjct: 468 --------------------------------ALENGIEEHELQDIVDRWRTANKRIKNF 495

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---- 576
           W+E  +A    ++NG       ++    +   K    L + LPSGR L Y          
Sbjct: 496 WHETQKAVIDCLQNG-----GIKKGPRGLKFYKKAGFLFIQLPSGRKLAYAKAHLKEGDY 550

Query: 577 ---RSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                Y     +   T + TYGGKL ENIVQA +RD+LAE M+   KAGY IV  VHDE 
Sbjct: 551 GPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVHDEA 610

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V E P+ +  +   +  +M+  P WA+GLPL AEG+E+K Y K
Sbjct: 611 VAEVPEGE-KSIEEMNKIMSIVPDWAEGLPLNAEGFETKYYMK 652


>gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes
           L99]
          Length = 644

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 217/692 (31%), Positives = 323/692 (46%), Gaps = 70/692 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
             L ID ET S  D+  CG   Y  +ED  ++LFA+ +DD PV++ D   D  +P  + E
Sbjct: 4   KVLRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLTIDE-IPDTVLE 62

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L N  V   AHN+ FERT L   +N  +P  +W CT+V     GLP++L  + +AL+L+
Sbjct: 63  DLNNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLA 122

Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRL 175
            +K  EGK LI  F   CK         RN P H  E W  F EYC+ DV V R I K++
Sbjct: 123 QEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVERSIAKKI 182

Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              P    EQ  W LDQ I D+G  +DV L        +  +  L ++ + LT   + + 
Sbjct: 183 AKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLTG--LENP 240

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             +++LK WL  + G  +  L + +   +L+  + L     ++   R   S++++ K   
Sbjct: 241 NSVQQLKDWL-ADMGYPVSSLNKDSVSELLAD-EDLDEDVREMLLLRQEMSKTSIKKYEK 298

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL---DQIITHLPTSI 350
           +  A   DGR+RG LQF GA+RTGRW+G +   QNLPR           D          
Sbjct: 299 MQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKDIAEVRKDLKAGDYEAFE 358

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
               +   ++S  +R+  IA +G    + D + IEARV+AW+AGEQW+L  F +   +Y 
Sbjct: 359 MMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYE 418

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            + ++ F++   +V K+ R  GKV ELALGY GG  A   M                   
Sbjct: 419 ASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNALIAMG------------------ 460

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                 A+E        + +  AWR+    ++ LW  + +  + 
Sbjct: 461 ----------------------ALEMGLKENELQGIVDAWRKASPAITSLWRGVEKHAKL 498

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYLNTT 583
            I   K+           +    +   L + LPSGR+L Y          G    Y   T
Sbjct: 499 AISTRKSQ------KYKGLTFYYEAGILFIKLPSGRNLAYFRAKLVPGKYGPQICYEGVT 552

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
            +   ++YTYGGKL ENIVQA++RD LA  +      G D V+ VHDE + E  +++  +
Sbjct: 553 DKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGIDTVMHVHDEAITEVQESE-SS 611

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              L  ++    SWA GLPL+ +G+ S  Y K
Sbjct: 612 VDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 643


>gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
 gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009]
          Length = 687

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 261/692 (37%), Positives = 378/692 (54%), Gaps = 26/692 (3%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
              +  +  HNS+F+RTVL+     L  P+ RW  T+V A ++GLP AL  + E L +  
Sbjct: 62  AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGALGELCEVLGVPQ 121

Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            K   +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181

Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            + +  EL  W+ DQ INDRG C+DV LA      VD E+ +L +  + +T G V ++  
Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L+
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRLQASTTSTSKYKALM 300

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353
           + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L         
Sbjct: 301 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 360

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408
            + +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF         DL
Sbjct: 361 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 420

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YA++F++AP  V K  R IGKVMEL LGY GG  AF   A   GL+L+  A+    
Sbjct: 421 YKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALP 480

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
           N   +   +A+++     +    + + +     AC+ +K+ WR+ H    + W EL    
Sbjct: 481 NIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELECTV 539

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTT 583
              I   +  +         + +++D   L + LPSGR++ Y        N +Y+  N+ 
Sbjct: 540 RTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSY 594

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
           +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++ E+PDT++FN
Sbjct: 595 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFN 654

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 655 DKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686


>gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A]
 gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A]
          Length = 653

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/703 (32%), Positives = 321/703 (45%), Gaps = 79/703 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S  DLTK G+ KYA+  +  ++LFA+  D  PVE  D      +P  + 
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL + +V  +A N+ FER  L     +   +   +W CT+V A   GLP++L    + L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            +  QK   G +LI  F   CK      +  RN P H  E W+ F EYC  DV V   I 
Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P+   E +L+ LDQ INDRG  +D  LA     I+         E++ LT   +
Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTG--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   L +LK WL  E G   E L +    + L+    L     +V   R+  S S+  K
Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  A  SD R+ G LQF GA+RTGRW+G +   QNLPR   S  +  + +       
Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355

Query: 351 TS---DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  D    +   +R+ ++A EG + +V+D + IEARV+AW A + W L+ F T   
Sbjct: 356 GIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHGK 415

Query: 408 LYVTTYARSFNV-------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           +Y  T A+ F++         +   KD R  GKV  LALGYQGG  A + M         
Sbjct: 416 IYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG-------- 467

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A+E+       + +   WR  + R+   
Sbjct: 468 --------------------------------ALENGIEEHELQDIVDRWRTANKRIKNF 495

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---- 576
           W+E  +A    ++NG       ++    +   K    L + LPSGR L Y          
Sbjct: 496 WHETQKAVIDCLQNG-----GIKKGPRGLKFYKKAGFLFIQLPSGRKLAYAKAHLKEGDY 550

Query: 577 ---RSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                Y     +   T + TYGGKL ENIVQA +RD+LAE M    + GY IV  VHDE 
Sbjct: 551 GPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVHDEA 610

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V E P+ +  +   +  +M+  P WA+GLPL AEG+E+K Y K
Sbjct: 611 VAEVPEGE-KSIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725]
 gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725]
          Length = 657

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 219/703 (31%), Positives = 323/703 (45%), Gaps = 75/703 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +D+ K G+ KYA  +D  ++LFA+  D   V++ D     ++P+V+ 
Sbjct: 1   MKHLSIDIETYSSVDIKKAGMYKYALSDDFQILLFAYSIDFGEVKIIDLAKGEILPEVII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL + ++   A+N+ FE   L         I +W  T+      G  + L A G A+ L
Sbjct: 61  EALNDKNIIKHAYNAPFEWWCL-NQAGYKTSIEQWRDTMFHGLYCGYTAGLGATGAAIGL 119

Query: 119 --SSQKMEEGKELIARFC---KGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
               +K   GK LI  FC   K         RN P+H  E W LF  YC  DV    EI+
Sbjct: 120 PQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPHHEPEKWELFKNYCIQDVVTETEIY 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           KRL   P+  +EQELW LDQ IN  G  +D  L      I D+   +L +E   +T   +
Sbjct: 180 KRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSINDIVTAELTEEAIQVTG--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  +TG  +E+L + T   ++ S +    +A++V   R   +++++ K
Sbjct: 238 DNPNSAAQLGKWLKEKTGQDIENLQKGTVSELIGSLEDK--EAVRVLEIRQELAKTSIKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              + EA+  DGR+RG LQF GA+RTGRW+G +   QNLPR      +  + I     + 
Sbjct: 296 YVAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQNLPRNYLETLDYAREIVKSQDAD 355

Query: 351 ---TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +    +S  +R+  + SEG K VVAD + IEARV+AW+AGEQW+ + F T   
Sbjct: 356 FLKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQWRQEVFATHGK 415

Query: 408 LYVTTYARSFNVAPA-----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           +Y  + ++ F V              R  GKV ELALGY G + A   M           
Sbjct: 416 IYEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAMG---------- 465

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                         A++          V + WR  + R+++LW 
Sbjct: 466 ------------------------------ALDMGLEEKELPDVVRRWRNANKRITDLWY 495

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR----- 577
            +  A  + +E G+    +       + +  D++ L + LPSGR L Y            
Sbjct: 496 GIENAVIKLMETGETQGLKGIIFSREIDLIYDQDFLTIKLPSGRKLYYPKPHLKENRFGS 555

Query: 578 -----SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                  +N TT++   + TYGGKL ENIVQA+SRD LA  +      G   V+ +HDE 
Sbjct: 556 NALHYFGVNQTTKKWEVQETYGGKLVENIVQAISRDCLAVTLKRLETEGLQTVMHIHDEA 615

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V +     +   + +  LM     WA GL LKA G+ES  Y K
Sbjct: 616 VIDADPNVD--LNKVCELMGQPIEWAPGLLLKAAGFESGYYMK 656


>gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583]
 gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
          Length = 653

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/703 (32%), Positives = 322/703 (45%), Gaps = 79/703 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S  DLTK G+ KYA+  +  ++LFA+  D  PVE  D      +P  + 
Sbjct: 1   MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLTISE-IPDEIV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            AL + +V  +A N+ FER  L     +   +   +W CT+V A   GLP++L    + L
Sbjct: 60  AALTDKNVLKIAFNAQFERVCLSKYLGIPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            +  QK   G +LI  F   CK      +  RN P H  E W+ F EYC  DV V   I 
Sbjct: 120 NIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMAIA 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P+   E +L+ LDQ INDRG  +D  LA     I+         E+++LT   +
Sbjct: 180 NKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTG--L 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   L +LK WL  E G   E L +    + L+    L     +V   R+  S S+  K
Sbjct: 238 ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALA-LGNLPENVAEVLKLRLSLSNSSTKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              +  A  SD R+ G LQF GA+RTGRW+G +   QNLPR   S  +  + +       
Sbjct: 296 YLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDVE 355

Query: 351 TS---DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  D    +   +R+ ++A EG + +V+D + IEARV+AW A + W L+ F T   
Sbjct: 356 GIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHGK 415

Query: 408 LYVTTYARSFNV-------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           +Y  T A+ F++         +   KD R  GKV  LALGYQGG  A + M         
Sbjct: 416 IYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG-------- 467

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A+E+       + +   WR  + R+   
Sbjct: 468 --------------------------------ALENGIEEHELQDIVDRWRTANKRIKNF 495

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN---- 576
           W+E  +A    ++NG       ++    +   K    L + LPSGR L Y          
Sbjct: 496 WHETQKAVIDCLQNG-----GIKKGPRGLKFYKKAGFLFIQLPSGRKLAYAKAHLKEGDY 550

Query: 577 ---RSYLNTTTR-QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                Y     +   T + TYGGKL ENIVQA +RD+LAE M    + GY IV  VHDE 
Sbjct: 551 GPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVHDEA 610

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V E P+ +  +   +  +M+  P WA+GLPL AEG+E+K Y K
Sbjct: 611 VAEVPEGE-KSIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK 652


>gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
 gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239]
          Length = 655

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/706 (31%), Positives = 318/706 (45%), Gaps = 83/706 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TLF D E+ S   L K G+  YAE  D  ++LF +  D  P+E+ D  +   +P  + 
Sbjct: 1   MRTLFCDIESFSLAQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP---------IHRWICTLVLARSNGLPSAL 109
            AL +  V   AHN+ FER  L A      P           +W CT++ +   GLP +L
Sbjct: 61  AALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPMSL 120

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKP-NHREAWRLFGEYCKGDV 165
            AV   LKL  QK   GK+LI +FC             RN P      W  F +Y + DV
Sbjct: 121 DAVATVLKLDVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRRDV 180

Query: 166 TVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            V   I  R    P+   E + + LDQ IND G  +D  L      + +  R       +
Sbjct: 181 EVELAIHDRLACFPMPESEWDTYTLDQRINDAGILLDHTLVDNAVGVDEHHRNATLARAQ 240

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           +LT   + +     +LK WL    G  L+ L +     V ++    T    +V   R   
Sbjct: 241 TLTG--LENPNSPIQLKQWLASR-GCVLDSLAK---AEVDAALDTATGTVKEVLGLRGDL 294

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           ++S+V K   +     SDGR RG +QF GA RTGR++G +   QNLPR      +  + +
Sbjct: 295 AKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARTL 354

Query: 344 T---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +L             +S  +R+  I S G + +VAD + IEARV+AW+AGE   L+
Sbjct: 355 VRTGNLEALELLHESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTLQ 414

Query: 401 AFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           AF  G+DLY  T +R F V   +     + R  GK+  LA G+ G   A ++M       
Sbjct: 415 AFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKLAVLACGFGGSTGALERMG------ 468

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A+         + +  AWR  +  + 
Sbjct: 469 ----------------------------------ALTMGLAEHELKPIVDAWRAANPHIV 494

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNN 576
            LW  + +A    I + ++I  R  R         +   L + LPSGR L Y    +G N
Sbjct: 495 ALWAGVEEAAIAAIASRQSIRLRNLR------FSVEAGILFIELPSGRRLAYVKPRLGEN 548

Query: 577 R-------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           R           TT R+  +  TYGGKLTENIVQA++RD+L  GM    KAG+ IV+ VH
Sbjct: 549 RWGGTSITYTGTTTARRWGQLETYGGKLTENIVQAIARDLLVTGMHAVAKAGHQIVMHVH 608

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           DEIV + P+   F A+    LM++ P+WA+GLPL A+GYE   YRK
Sbjct: 609 DEIVIDEPENSGFTATGACELMSTLPAWAEGLPLDADGYECAYYRK 654


>gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 658

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 207/692 (29%), Positives = 311/692 (44%), Gaps = 72/692 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            +L +D ET S ++L++CG+ +Y +D    ++L ++  DD  V   D      +P  +  
Sbjct: 20  KSLALDLETFSAVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLASGEQLPPEVVA 79

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           AL++  V   A+N+ FERT L A     +    W CT+V A + GLP +LK VG  L L+
Sbjct: 80  ALDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVLGLA 139

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR--LEP 177
            QK+ EGK+LI  F               +   AW LF +Y   DV V   I ++    P
Sbjct: 140 HQKLAEGKDLIKYFSLPTKT--GIRHQPSDDSAAWALFKQYNARDVEVETTIRRKLSHHP 197

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           +  +    + +DQ INDRG  +D  LA          R +     + LT   + +     
Sbjct: 198 VPDEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELTG--LDNPASPL 255

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L++WL  + G  +  + +   + V S+    T    +    R   S+S+V K   + +A
Sbjct: 256 QLQSWLAEQ-GCKISSMAK---EDVDSALDTATGSVREALELRQDLSKSSVAKYRKMADA 311

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT---SITSDP 354
             +DGR  G LQF GASRTGRW+G +   QNLPR         + + H           P
Sbjct: 312 TCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPDLAQARSLVHYGDFDVLEMLYP 371

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                +S  +R+  I SE  + +VAD + IEARVLAW+AGE+  L AF  GEDLY  T +
Sbjct: 372 SVPDTLSQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTNGEDLYCATAS 431

Query: 415 RSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
             F V   +     + R  GK+  LA GY G   A + M                     
Sbjct: 432 AMFGVPVEKHGANAELRQKGKIAVLACGYNGSVGALKAMG-------------------- 471

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                               A++     +  + +  AWR  +  +  +W+++ Q   Q I
Sbjct: 472 --------------------ALKMGLTASELQPIVDAWRAANPNIVAMWHDVDQTAIQAI 511

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT------ 584
                +          +     K  L + LPSGR L Y    +G NR    + T      
Sbjct: 512 TTRSTVTLG------NLSFTGTKGMLFITLPSGRRLAYVKPGLGVNRFGGTSITYWGQGI 565

Query: 585 -RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
            R+  +  TYGGKL ENIVQA +RD+LAE +     AG+++V+ +HDE+V +        
Sbjct: 566 NRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAGHEVVMHIHDEVVVDESKDSGTT 625

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            + +  LM   P+WA GLP+ A GY+   Y K
Sbjct: 626 VADICTLMNQLPTWALGLPIDAAGYKCDFYMK 657


>gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
 gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9]
          Length = 653

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/700 (32%), Positives = 331/700 (47%), Gaps = 73/700 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S ID+ K G  KYA+  D  +++FA+ +D  PV++ D      +PQ + 
Sbjct: 1   MRTLNIDIETYSSIDIKKAGAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQEIV 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL +  V   A+N+ FE   L   F   I   +W CT V     G  + L AVGEAL +
Sbjct: 61  EALADPAVVKHAYNAAFEWYCLNRFFYSPIE--QWRCTQVHGLYCGYTAGLGAVGEALGI 118

Query: 119 SSQ--KMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
                K+  G  LI  F   CK      +  R  P+H  E W+LF EYC GDV    EI 
Sbjct: 119 PQDKRKLGTGGSLIRTFCIPCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGDVVAEMEIQ 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+  +E +LW+LDQ IN RG   D+ +      + +   ++L  E  SLT   +
Sbjct: 179 RRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEAISLTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            + + +++L  WL  ETG  +E+L + T  +++    +   +A +V   R   S+++  K
Sbjct: 237 DNPKSVQQLSKWLAEETGEEVENLQKGTVSKLIDKLDE--GKARRVLEIRQELSKTSTKK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLP 347
              +  A  SD R+RG LQF GA+RTGRW+G +   QNLPR   S  E  + +     + 
Sbjct: 295 YAAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVVERKVE 354

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +    +S  +R+  +   GK+L VAD + IEARV+AW+AGEQW+L  F T   
Sbjct: 355 MLKFVYGNVPDTLSQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVFATHGK 414

Query: 408 LYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + ++ F V   Q+ K  D R  GKV ELALGYQGG  A   M              
Sbjct: 415 IYEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMG------------- 461

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                      A++          +   WR  + R+ +LW  + 
Sbjct: 462 ---------------------------ALDQGLTEAELPEIVTRWRNANRRIVDLWYSME 494

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRS----- 578
            A  + +E G+ +  R        +    ++   + LPSGR L Y    +  N       
Sbjct: 495 AAAIEVMETGQPVGVRGLIFARESHHATKQDFFTITLPSGRKLFYAKPFLRENDFGKPAL 554

Query: 579 ---YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
               ++ T+++ T   TYGGKL EN VQA++RD LA  +M     GY IVL VHDE+  E
Sbjct: 555 HYWGMDQTSKKWTVLNTYGGKLVENCVQAIARDCLAVTLMRLDHVGYPIVLHVHDEVGAE 614

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              +       +  +M     WA GLPLK +G+ +  Y K
Sbjct: 615 L--SSADELDRMLEIMAQPIQWAPGLPLKGDGFVTNFYMK 652


>gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
 gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7]
          Length = 646

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 216/696 (31%), Positives = 329/696 (47%), Gaps = 76/696 (10%)

Query: 4   LFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET S +D+TK G+  Y  AED  ++LFA+ ++D  + + D      +PQ + E L
Sbjct: 2   LSIDIETYSSVDITKSGVYAYTEAEDFEILLFAYAYEDKEINIIDLAFGEKLPQGIIEDL 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +   A N+ FERT L    N  +P  +W C+ V A + G   +L+   ++L L  Q
Sbjct: 62  TNPKLIKTAFNANFERTCLAKYLNKPMPPEQWRCSAVHALALGFGGSLEGAAKSLNLQQQ 121

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLEPLS- 179
           KM+EGK LI  F           RN P H  E W++F  YCK DV V R + K+LE    
Sbjct: 122 KMKEGKALIRYFSMPCKR-GERSRNLPQHNIEKWKVFKTYCKQDVEVERAVRKKLEKYPV 180

Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
             KE ELW LDQ IND G  +D  L H+  +     ++K  +E  +LT   + +     +
Sbjct: 181 TKKEWELWALDQKINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALTG--LENPNSQVQ 238

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           LK WL  + G+  E L++   + +L   +    +  +V   R   S+++V K   +  A+
Sbjct: 239 LKGWLETK-GVKAESLSKEKVRELLKEVEDE--KVKRVLKLRQELSKTSVKKYEAIKRAV 295

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTSITSDPD 355
             D R+RG L+F GA+RTGRWSG +   QNLPR +  + E  +++    +          
Sbjct: 296 CKDERVRGLLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEMLEVLFYS 355

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
             +++S  +R+  I +   + +V+D + IEARV+AW+AGE+W +  F+    +Y    +R
Sbjct: 356 VPEVLSQLIRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSGKVYEMAASR 415

Query: 416 SFNVAPAQVTKD-----QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            F V   ++ K       R  GKV  LA GYQG   A   M +                 
Sbjct: 416 MFGVPIEKIVKGNMEYSLRQKGKVATLACGYQGSTGALIAMGAVK--------------- 460

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                              +  AWR+ +S + +LW ++  A  +
Sbjct: 461 -------------------------MGLKEEELSGIVAAWRKSNSNIVKLWRKIEDAAIK 495

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS-----------Y 579
            +   K +  +       +     +  L + LPSGRSL Y      +             
Sbjct: 496 AVREKKVVKMQYG-----LEFFGSEEFLFIKLPSGRSLSYVRPRIEKDFRFNKLKLTYEG 550

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
           +   T+   R  TYGGKLTENIVQA++RD LA  M+   +AGY IV  VHDE++ + P+ 
Sbjct: 551 IEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRAGYKIVFHVHDEVILDVPNG 610

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              +   +  +M     WAKGLPLKA+G+E+  Y+K
Sbjct: 611 F-GSLKEVNEIMGKPIEWAKGLPLKADGFETDYYKK 645


>gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 662

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 215/703 (30%), Positives = 315/703 (44%), Gaps = 78/703 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DL  CG+ +Y E  D  V+LFA+ +DD PV++ D      +P  + 
Sbjct: 9   MKILQIDLETYSSVDLKDCGVYRYVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVV 68

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L + +V   A N+ FERT +K  F +     +W CT V A + GLP  L+ V E LKL
Sbjct: 69  HDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRCTAVWALALGLPGYLEGVAEVLKL 128

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFK 173
            +QK   GK LI  F   CK         RN P H   E W  +  Y   DV V RE+ +
Sbjct: 129 EAQKDTRGKNLIKYFSVPCKPTKANGGRTRNHPPHHDMEKWEQYKAYNIQDVVVEREVRR 188

Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +LE  P+   E +LW LDQ INDRG  +D  L +      D  +T L QE + +T   + 
Sbjct: 189 KLERFPVPQHEWDLWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKDIT--QLE 246

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +   L KLK WL  +     + L +     +L           +V   R    +++V K 
Sbjct: 247 NPNSLTKLKEWLAEQGLETPDGLGKEHMPTLLVQAPDEDT--RRVLQIRQELGKTSVDKY 304

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT--- 348
           N +  ++ +DGR RG LQF GA+RTGRW+G +   QNLP+   +   + + +        
Sbjct: 305 NAMARSICADGRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNALWMAREVLKSGDFDL 364

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                     ++S  +R+  I S G + +V+D + IEAR++AW+A E W L  F+    +
Sbjct: 365 LEMLYGALPSVLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEHWVLNVFQDHGKI 424

Query: 409 YVTTYARSFNVAPA-----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           Y    ++ F V            + RA GKV  LA GYQGG  A  KM            
Sbjct: 425 YEAAASQMFKVPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKMG----------- 473

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                        A++          + K WR+ + R+ +LW  
Sbjct: 474 -----------------------------ALKSGIPEEELPGIVKRWRKANPRIVKLWYA 504

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR------ 577
             +A    +   + +          V  +     L   LPSGRSL Y +           
Sbjct: 505 AEEAALTAVREKRTVPLA-----HGVKYRYKSGTLFADLPSGRSLAYVNPRIKPDPNFGK 559

Query: 578 -----SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                  ++   ++     TYGG+L EN+VQA++RD LAE +M    A Y  V+ VHDE+
Sbjct: 560 DGLVFDGMDQIKKKWMSHRTYGGRLVENLVQAIARDCLAESLMRLDAAEYRTVMHVHDEV 619

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V + P     +   +  +M+    WA GLPL A G+E + Y+K
Sbjct: 620 VLDVPIGT-GSVDHVTGIMSQPIDWAPGLPLSAAGFECEFYQK 661


>gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC
           BAA-613]
          Length = 661

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 219/707 (30%), Positives = 321/707 (45%), Gaps = 82/707 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQ----V 56
           T+ +D ET S ID+ + G+  YA   D  ++L  + +D   V++ D       P+     
Sbjct: 2   TMNVDIETYSSIDIREAGVYAYASAPDFEILLIGYRYDGQDVKVIDLTDPLADPERDFPD 61

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
             E L + DV   A+N+ FERT L +     +P  +W CT V A + GLP  L  VGEAL
Sbjct: 62  FWEGLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAATLGLPGTLGGVGEAL 121

Query: 117 KL--SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDV--TVT 168
            L    QK + GK LI  F   CK      +  RN P H  + W+LF EY + DV    T
Sbjct: 122 GLPEDKQKDKIGKSLIQYFCKPCKPTKTNGMRSRNLPEHAPDKWQLFIEYNRQDVVAEAT 181

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                ++ P++ +EQELW LDQ IND G  +D+ LA  + Q   + + +L QE   LT  
Sbjct: 182 IREKLQIYPVARQEQELWNLDQHINDHGVRLDMDLADKIIQYDGIYQERLKQEARKLTG- 240

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQAI--QVFNNRMRA 283
            +++   L +LK W F+  GL +  +T+ +    +  L   K         ++   R   
Sbjct: 241 -LNNPNSLPQLKMWFFMTYGLDVPSITKDSIPVIEAQLKELKTTHDVLPGLRMLQIRKEL 299

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +++V K   +  A+  DG LRG LQF GA+RTGRW+G +    NLP+      +L + +
Sbjct: 300 GKTSVKKYQAMRHAVCPDGYLRGILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLARDL 359

Query: 344 THLPT---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                             + S  +R+  I SEG + VV+D + IEARV+AW+A E+W+L 
Sbjct: 360 VKQEDFDTLELLFEGIPFVFSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADEKWRLN 419

Query: 401 AFETGEDLYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            F T   +Y  + A+ F+V     +     R  GKV ELALGY GG  A + M       
Sbjct: 420 VFRTHGKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYGGGFGAMKAMDKAG--- 476

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                                          +   WR+    + 
Sbjct: 477 --------------------------------------TIPDDEIPMIIANWRKASPNIC 498

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR- 577
           +LW     A    IE  + I  +       +        L + LPSGR L Y D      
Sbjct: 499 KLWRNAEAAARAAIEERRTIKLK-----HGLSFSYINRILFIGLPSGRKLAYYDTRIEDD 553

Query: 578 ---------SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                    + ++  T++  R  T+GGKL ENIVQA +RD LA  M   + AGY IV+ V
Sbjct: 554 EKGKSVITYAGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERVSGAGYQIVMHV 613

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           HDEI+ + P+TD      +  +M     WA+ LPL+ +GYE+  Y+K
Sbjct: 614 HDEIIVDVPETDIDALEKITAIMAQPVPWAQELPLRGDGYETPFYKK 660


>gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916]
 gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916]
          Length = 653

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/701 (29%), Positives = 315/701 (44%), Gaps = 75/701 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVL- 57
           M TL ID ET   +D+   G  KY E     ++L A+ +DD PV++ D ++   +P+VL 
Sbjct: 1   MRTLAIDVETYCELDIKSVGAYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIPEVLE 60

Query: 58  KEALEN-TDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            +  E+ + V   A N+ FER  +KA F  L      W CT+V A + GLPS+L  VG+A
Sbjct: 61  FDIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTLGLPSSLDMVGKA 120

Query: 116 LKL--SSQKMEEGKELIARFCKG---ETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           LK     QKM+EGK LI  FCK            RN P H  E W  F EYCK DV V R
Sbjct: 121 LKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVER 180

Query: 170 EIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           EI         + KE+ELW LDQ INDRG  VD+ L     +  +  + +L +E  +LT 
Sbjct: 181 EIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLKEEAINLTG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             +++     +LK W+    G  +  LT+ +   ++  +K       ++   R   ++++
Sbjct: 241 --LNNPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESKDKN--VKKILELRQLMAKTS 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---T 344
           + K  T++ A   D R+RG LQF GA+RTGRW+G +   QNLP+      E  + +    
Sbjct: 297 IKKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLEEARNLLRNG 356

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
              T           +S  +R+  I ++G + +VAD + IEARV+A++A EQW+L  F+ 
Sbjct: 357 DFETIEFLFDSIPDTLSQLIRTAFIPTDGNRFIVADFSAIEARVIAYLANEQWRLDVFKE 416

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D+Y  + ++ F V   +   +     K                               
Sbjct: 417 GGDIYCASASKMFKVPVEKHGINGHLRAKG------------------------------ 446

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                    +  +                           ++   WR+    +++ W  +
Sbjct: 447 ---------KIAELALGYGGAGGAIRAFDKTGSIPDEDLPKLVSDWRKASPHITQFWWNV 497

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS------ 578
            +A ++ I     +          +    D   L + LPSGR L Y              
Sbjct: 498 DKAAKKAITEKTTVALH-----HGIKFIYDPGVLFIQLPSGRKLSYLRPKIEEGKFGSDV 552

Query: 579 ----YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                +  T++Q  R  TYG KL ENIVQA +RD LAE M    K G+ +V+ VHDE+V 
Sbjct: 553 ITYEGMEQTSKQWKRIETYGPKLVENIVQAFARDCLAETMARVEKKGFKVVMHVHDELVL 612

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +    +  +   +  +   +  WA GLPLKA+GYE   Y K
Sbjct: 613 DVSK-EIGSVEEICSIFAESIEWAPGLPLKADGYECNYYMK 652


>gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9]
 gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9]
          Length = 640

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/696 (32%), Positives = 324/696 (46%), Gaps = 78/696 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLPS+L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H  E W++F +YC  DV V   I 
Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL+++T    
Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITGLA- 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL    G     LT+     V    K    +  +V   +++ + S++ K
Sbjct: 238 -NPNSRAQLLPWLKEH-GYSANGLTK---ADVEQELKTAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R      +  +       + 
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                       +   VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F T   
Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                
Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+         + +   WR+ + ++ + W ++ +A
Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580
             + I++   I   K R       +  K  L + LPSGR+L Y        D G+   Y 
Sbjct: 493 AIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYE 546

Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               +   T + TYGGKL ENIVQA +RDILAE ++    AGY +V  VHDE + E    
Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE---G 603

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +  LM   P WA+GLPL +EGY +K Y K
Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes
           MGAS315]
 gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage
           315.6]
 gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1]
 gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 640

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 222/696 (31%), Positives = 324/696 (46%), Gaps = 78/696 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLPS+L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H  E W++F +YC  DV V   I 
Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT   +
Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL    G     LT+     V    K    +  +V   +++ + S++ K
Sbjct: 237 DNPNSRTQLLPWLKEH-GYSASGLTK---ADVEKELKTAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347
              +  A  SDGR+ G LQF GASRTGRW+G V   QNL R      +  +       + 
Sbjct: 293 YEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                       +   VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F T   
Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                
Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+         + +   WR+ + ++ + W ++ +A
Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580
             + I++   +   K R       +  K  L + LPSGR+L Y        D G+   Y 
Sbjct: 493 AIKAIKSRAPVRLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYE 546

Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               +   T + TYGGKL ENIVQA +RDILAE ++    AG+ +V  VHDE + E    
Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE---G 603

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +  LM   P WA+GLPL +EGY +K Y K
Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMK 639


>gi|139473888|ref|YP_001128604.1| phage DNA polymerase [Streptococcus pyogenes str. Manfredo]
 gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2]
 gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str.
           Manfredo]
 gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2]
          Length = 640

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/696 (32%), Positives = 325/696 (46%), Gaps = 78/696 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLPS+L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H  E W++F +YC  DV V   I 
Sbjct: 119 KLAQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT   +
Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL    G  +  LT+     V    K    +  +V   +++ + S++ K
Sbjct: 237 DNPNSRAQLLPWLKEH-GYSVNGLTK---ADVEQELKTAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R      +  +       + 
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                       +   VR+ ++A +     V+D + IEARV+AW AGEQW+L  F T   
Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                
Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+         + +   WR+ + ++ + W ++ +A
Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580
             + I++   I   K R       +  K  L + LPSGR+L Y        D G+   Y 
Sbjct: 493 AIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYE 546

Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               +   T + TYGGKL ENIVQA +RDILAE ++    AGY +V  VHDE + E    
Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE---G 603

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +  LM   P WA+GLPL +EGY +K Y K
Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047]
 gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047]
          Length = 640

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/696 (32%), Positives = 324/696 (46%), Gaps = 78/696 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLPS+L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           KL  +K   GK LI  F   CK         RN P H  E W++F +YC  DV V   I 
Sbjct: 119 KLVQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT   +
Sbjct: 179 EKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL    G  +  LT+     V    K    +  +V   +++ + S++ K
Sbjct: 237 DNPNSRAQLLPWLKEH-GYSVNGLTK---ADVEQELKTAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R      +  +       + 
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                       +   VR+ ++A +     V+D + IEARV+AW AGEQW+L  F T   
Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                
Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+         + +   WR+ + ++ + W ++ +A
Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580
             + I++   I   K R       +  K  L + LPSGR+L Y        D G+   Y 
Sbjct: 493 AIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVYE 546

Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               +   T + TYGGKL ENIVQA +RDILAE ++    AGY +V  VHDE + E    
Sbjct: 547 GQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE---G 603

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +  LM   P WA+GLPL +EGY +K Y K
Sbjct: 604 SGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
 gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398]
          Length = 653

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/705 (31%), Positives = 324/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D  P+   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++       E   W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KESTGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
 gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429]
          Length = 640

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/696 (32%), Positives = 326/696 (46%), Gaps = 78/696 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLP++L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H    W++F  YC  DV V   I 
Sbjct: 119 KLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT   +
Sbjct: 179 EKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL    G     LT+     V    KK   +  +V   +++ + S++ K
Sbjct: 237 DNPNSRAQLLPWLKEH-GYSANGLTK---ADVEQELKKAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R      +  +       + 
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                       +   VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F T   
Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                
Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+         + V   WR+ + ++ + W ++ +A
Sbjct: 458 -------------------------ALNMGVKEEELQGVVDDWRRANKKIVQFWKDVQRA 492

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580
             + I++   I   K R       +  K  L + LPSGR+L Y        D G+   Y 
Sbjct: 493 AIKAIKSRAPIKLGKIR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYE 546

Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               R   T + TYGGKL ENIVQA +RDILAE ++    AGYD+V  VHDE + E    
Sbjct: 547 GQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE---G 603

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +  LM+  P WA+GLPL +EGY +K Y K
Sbjct: 604 SGLIIEEVNDLMSQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1]
          Length = 658

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 204/713 (28%), Positives = 302/713 (42%), Gaps = 94/713 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M T+ ID ETRS  D+TKCG+  YA+     + L +   DD  V+L+D  +   +P+ + 
Sbjct: 1   MKTIEIDLETRSDRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVPEDIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIP------------------IHRWICTLVLA 100
            AL +  V   A N  FER  L      + P                     W CT++  
Sbjct: 61  TALVDESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVGWQCTMIHC 120

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR--NKPNHREAWRLFG 158
           R+ GL S L + G ALKL  QKM EGK LI  FC          +  +  +  E W  F 
Sbjct: 121 RTLGLSSTLASAGAALKLEQQKMPEGKALIKYFCVPYDTVDGIPQFHSPADAPEKWETFK 180

Query: 159 EYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            Y K DV     I +RL   P+     E +YLDQ INDRG  VD+ L      +    + 
Sbjct: 181 AYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVDMELVEAALTLDAQAKA 240

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            L  E+  LT   + +   + +L  WL  + G   + L +   + +L + K        V
Sbjct: 241 TLSSEMRRLTG--IENPNSVYQLLEWLGEQ-GYKSDCLDKAAVKELLKTVKDP---VKSV 294

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R+  S+S+V K   +  A  SD R RG   F GASRTGRW+G +   QNLP+     
Sbjct: 295 LELRLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTGRWAGRIIQLQNLPQNHIPD 354

Query: 337 EELDQI---ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               +      +         D    +S  +R+  +   G K ++AD + IEARV+AW+A
Sbjct: 355 LTEARNTVKYGYYDEVEMFYGDVPDTLSQLIRTAFVPRPGYKFIIADFSAIEARVIAWLA 414

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKM 451
           GE+W++ AF  G D+Y  + ++ F V   +     + R  GKV ELA GY G   A + M
Sbjct: 415 GEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGYGGSVGAMKAM 474

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                                                            +  +++   WR
Sbjct: 475 G----------------------------------------GDALNLSDSELKQIVTDWR 494

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY- 570
                + + W  +  A ++ I+               +        L + LPSGR L Y 
Sbjct: 495 DASPNIVKFWWTVDDAVKKAIKQKITTETHG------LQFSYQSKMLFITLPSGRKLCYA 548

Query: 571 -RDVGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              +G N+      +Y+    +++  R  +YG K  ENIVQAV+RD+L   M        
Sbjct: 549 HPQIGENQFGGESVTYMGVGASKKWERIESYGPKFVENIVQAVARDLLMFSMQTM--RCC 606

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IV  +HDE++ E       +   +   M   P+WA+GL L+A+GYE + YRK
Sbjct: 607 FIVGHIHDEMIIEA--DRRMSLDEVCRQMERTPAWAEGLLLRADGYECEFYRK 657


>gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
 gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937]
          Length = 653

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/705 (31%), Positives = 325/705 (46%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG+ KY  AED  +++ A+  D  P+   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++       E   W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
 gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005]
 gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096]
          Length = 640

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/696 (32%), Positives = 325/696 (46%), Gaps = 78/696 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+ K G+ KYA  ED  ++LFA+  D   VE  D      +P+ +K
Sbjct: 1   MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
           + L +  V   A N+ FER  L     L   +   +W CT+VLA+  GLP++L+     L
Sbjct: 59  DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIF 172
           KL+ +K   GK LI  F   CK         RN P H    W++F  YC  DV V   I 
Sbjct: 119 KLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMAIA 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL++LT   +
Sbjct: 179 EKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL    G     LT+     V    KK   +  +V   +++ + S++ K
Sbjct: 237 DNPNSRAQLLPWLKEH-GYSANGLTK---ADVEQELKKAEGELKRVLELKLQTAMSSLKK 292

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347
              +  AM SDGR+ G LQF GASRTGRW+G V   QNL R      +  +       + 
Sbjct: 293 YEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDID 352

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                       +   VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F T   
Sbjct: 353 AVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK 412

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M                
Sbjct: 413 IYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG--------------- 457

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A+         + +   WR+ + ++ + W ++ +A
Sbjct: 458 -------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQRA 492

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNNRSYL 580
             + I++   I   K R       +  K  L + LPSGR+L Y        D G+   Y 
Sbjct: 493 AIKAIKSRAPIKLGKIR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIYE 546

Query: 581 NTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               R   T + TYGGKL ENIVQA +RDILAE ++    AGYD+V  VHDE + E    
Sbjct: 547 GQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE---G 603

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                  +  LM   P WA+GLPL +EGY +K Y K
Sbjct: 604 SGLIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639


>gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 726

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 212/697 (30%), Positives = 330/697 (47%), Gaps = 73/697 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  L ID ET S  ++   G+  Y +  +  ++LFA+  D   V+L D      +P  + 
Sbjct: 80  IKILSIDIETYSDNEI-TNGVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIPAKIL 138

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL ++++   A N+ FER  +     L +   +W CT + A   GLP++L++ GE LKL
Sbjct: 139 DALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVLKL 198

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             +K+ EG ELI  F   CK         RN P H  + W  F  YC  DV V + I ++
Sbjct: 199 KHKKLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQRK 258

Query: 175 L-----EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +      P++  E+ L+  DQT+ND+G C+D  LA+   ++ D  + +L  E++ +T   
Sbjct: 259 VCNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN-- 316

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           + +     +LK WL  + G  ++ L +   + + +   +      +V   R  +S+++V 
Sbjct: 317 LENPNSPVQLKQWLSSKLGRPIQSLAKEDAKELATGASED---VKRVLYLRSMSSKTSVK 373

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---L 346
           K   +  A  SD +L   LQF GA +TGRW+G +    NLPR S     L + +      
Sbjct: 374 KYEAMTLAKCSDNKLHDLLQFYGA-KTGRWAGRIVQVHNLPRNSSKDLALARELVKKNDF 432

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                +  +   I+S  +R+  IA E   L V D + IEARV+AW+AGE+W+LK F    
Sbjct: 433 ELLELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKVFRGSG 492

Query: 407 DLYVTTYARSFNVAPAQVTKD--QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  + AR F V    +T D   R  GK+ ELALGY+GGA A + M +           
Sbjct: 493 RIYEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIMGADK--------- 543

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                   ++   WR     + +LW ++
Sbjct: 544 -------------------------------MGLSDPEIAQIVSGWRNSSPNIVKLWRDV 572

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG---NNRSYL- 580
            +A ++ I + + I  ++   +     +K  N L + LPSGR L Y       N   Y+ 
Sbjct: 573 ERAAKEAILSDRIIKLKQGGLI----FRKTSNILQIKLPSGRLLSYPLAKIVDNKICYMS 628

Query: 581 -NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP-D 638
            N TTRQ     TYGGKL ENIVQA++RD L E ++   K GY+I   VHDEI+ E P D
Sbjct: 629 QNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDKKGYNICFHVHDEIIAEVPTD 688

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                   + ++  +  ++A  LPLK EGY +  Y K
Sbjct: 689 ESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLK 725


>gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A]
 gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A]
          Length = 653

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 223/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D  PV   D       P    
Sbjct: 1   MKYMNIDIETYSSNDISKCGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL + +V   A N+ FER  L   FN ++P   W CT+V     GLP++L  VG
Sbjct: 61  YETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTR 169
           E L L +QK + GK LI  F   CK         RN P H  + W+ F +YC  DV V  
Sbjct: 121 EVLNLQNQKDKAGKNLIRYFSVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYCVRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++      +EQ+ W LDQ INDRG  +  +L    N++  + + +L ++   +T 
Sbjct: 181 SIATKIKDFPVTKEEQKYWSLDQHINDRGIKLSKSLMLGANELDKISKAELLKQATKITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L      T +A Q+   R++ S+++
Sbjct: 241 --LENPNSPSQLLKWLNEEQGLDIPNLQKKTVQEYLKY---ATGKAKQMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M  D R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCGDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELNIARDFIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG  L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPA--QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + A+ F V     +     R  GKV ELALGYQGG  A + M        
Sbjct: 415 FNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALGYQGGPGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A++     +  + +  +WR+ +  +  
Sbjct: 468 ---------------------------------ALDMGIDESELQGLVDSWRKANPNIVA 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            W     A  +T+   +  +    R          K  L++ LPSGRSL Y       + 
Sbjct: 495 FWKGCQDAAIETVRTRQTHLTHGLR------FYMKKGFLMIELPSGRSLAYPKARVGENS 548

Query: 580 LNTT---------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
             +           R+ T+  TYGGKL ENIVQA +RD+LA  M     AG+ IV  VHD
Sbjct: 549 WGSPVVEFMGLDLNRKWTKLKTYGGKLVENIVQATARDLLAISMYRIEHAGFSIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E PD        + ++M+    WA+GL L ++G+ S  Y K
Sbjct: 609 EVIVEIPDGS-GGLKAIENIMSKPVKWAEGLKLNSDGFTSPFYMK 652


>gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp.
           aureus C427]
          Length = 653

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 225/705 (31%), Positives = 325/705 (46%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG+ KY  AED  +++ A+  D  P+   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++       E   W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K  T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y   +    S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30]
 gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30]
          Length = 653

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 225/705 (31%), Positives = 325/705 (46%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG+ KY  AED  +++ A+  D  P+   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++       E   W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K  T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y   +    S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVIEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
 gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII]
          Length = 693

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 249/697 (35%), Positives = 373/697 (53%), Gaps = 32/697 (4%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L++D ET S   +   G   YA +  ++L A+  DD PV + +      +P  L  AL 
Sbjct: 4   ILWLDLETYSETPIRN-GTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVPLCTALR 62

Query: 63  NTDVTIVAHNSYFERTVLKACFN-LDIP------IHRWICTLVLARSNGLPSALKAVGEA 115
           + +  + AHNS F+RTVL+        P      + RW  T+V A ++GLP +L  + + 
Sbjct: 63  DGETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVKALAHGLPGSLSDLCDI 122

Query: 116 LKL--SSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIF 172
           L +     K + GK LI  FCK         R  K  H E W+ F +Y   D+   REI 
Sbjct: 123 LGVAQDKAKDKAGKALIQLFCKPRAKNSAIRRATKQTHPEEWKRFIDYAGLDIEAMREID 182

Query: 173 KRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           K+L   + +  EL  W+ DQ INDRG  +D  LA      V++E+ +L    + LT   V
Sbjct: 183 KKLPVWNYQSNELALWHFDQRINDRGVQMDTVLAEAAVSAVEIEQKRLAVRTQDLTDNEV 242

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            ++   + L   +    G+ L D+  +T QR +S    L  +  ++   R++AS ++  K
Sbjct: 243 QAATQRDVLLKHIVEAFGVTLPDMQASTIQRRVSD-PDLPIELRELLAIRLQASTTSTSK 301

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
             TL++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRP    E +D  I  L    
Sbjct: 302 YKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLGQETIDTGIEALKAGC 361

Query: 351 TS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG--- 405
                 + +++IS  +R C++A EGKKLVV+DL+ IE R L W++GE+WKL+AF      
Sbjct: 362 ADLLFDNVMELISSALRGCIVAPEGKKLVVSDLSNIEGRALVWLSGEEWKLQAFRDYDAG 421

Query: 406 --EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              DLY+  YAR+FN++P  V K QR IGKVMEL LG+ GG  AF   A   GL+L+  A
Sbjct: 422 TGHDLYMLAYARAFNISPDNVDKIQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDGLA 481

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                N       +A+++ +   +    + + +     AC+ +K+ WR  H +    W E
Sbjct: 482 KAALPNVPASIQREAQSWYKASVKQKRTYGLSEQVFI-ACDSLKRMWRNAHPKTVSFWYE 540

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG---NNRSYL 580
           +     + I   +     ++  +     ++D + L + LPSGR++ Y  +       SY+
Sbjct: 541 IEDTVRRAIAAPRQTFTCRKLKI-----RRDGSWLRIQLPSGRAVCYPGIRIDEGKISYM 595

Query: 581 --NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
             N+ +R+  R  TYGGKLTEN+ QA +RD++A  M     +GY+I LTVHDE++ E PD
Sbjct: 596 GINSYSRKWQRLKTYGGKLTENVTQAAARDVMANNMPLIETSGYEITLTVHDEVLTEAPD 655

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           T++F +  L  L+ +NP WA  LPL A G+E+  YRK
Sbjct: 656 TEQFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 692


>gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47]
 gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47]
 gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 653

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/705 (31%), Positives = 322/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++       E   W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q      K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y   +    S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +      G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
 gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM
           13479]
          Length = 656

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 213/703 (30%), Positives = 309/703 (43%), Gaps = 76/703 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ETRS ID+ K G  KYA+  D  ++LFA+ +++ PV++ D  +   +P  L 
Sbjct: 1   MHHLSIDIETRSSIDIGKAGAYKYAQSPDFEILLFAYQWNNDPVKVIDLKNGEELPCWLM 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL + +V   A+N+ FE   L  C   + PI +W CT+      G  + L A G+A+ L
Sbjct: 61  QALADPNVIKHAYNAAFEWYCL-NCAGYETPIEQWRCTMAHGLYCGYTAGLDATGKAIGL 119

Query: 119 --SSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIF 172
               QK+  GK LI  FC   K          N+P H  + W LF EYC  DV   REI 
Sbjct: 120 PQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDKWELFKEYCLQDVVTEREIL 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           KRL+  P+  +E+ LW +D  +N  G  VD  L      I  +   +L  E  SLT    
Sbjct: 180 KRLDLFPMPEEEEHLWQMDVLMNAYGVRVDTDLIEGALYIDQISTQRLTDEAISLTGLQ- 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL    G   ++L + T   +L        +  ++   R +  ++++ K
Sbjct: 239 -NPNSAAQLLQWLRD-NGTEADNLQKATVAELLGGI--NPNKVRRMLEIRQQLGKTSIKK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A     R+RG  Q+ GA+RTGRW+G +   QNLPR      +  + +       
Sbjct: 295 YVAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVKAKNYD 354

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +    +S  +R+  I S G K VVAD + IEARV+AW+AGEQW  + F T   
Sbjct: 355 GVRILYGNVPDTLSQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQWVNEVFATHGK 414

Query: 408 LYVTTYARSFNVAPAQVTKD-----QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           +Y  T ++ F V   ++ K       R  GKV  LALGYQGG  A   M           
Sbjct: 415 IYEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIAMG---------- 464

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                         A++          + + WRQ + R+  LW 
Sbjct: 465 ------------------------------ALQMGLTEEELPDIVQRWRQANPRIKGLWY 494

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSY- 579
            +  A    +E  +              +   ++ L + LPSGR L Y    +  NR   
Sbjct: 495 AIENAALAVMETAQPQGINGLIFALEGDIIYGQSFLTVRLPSGRKLFYPKPFLKENRFEK 554

Query: 580 -------LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                  +   TR+     TYGGK+ ENIVQA++RD LA  +      G  +V  VHDE+
Sbjct: 555 MAVHYYTVGQQTRKWEVTSTYGGKMVENIVQAIARDCLAVTLERIASKGLQVVFHVHDEV 614

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + + P   E     +  LM     WA GL LK  G+ES  Y K
Sbjct: 615 IIDAP--METTVEEICDLMAEPIPWAPGLVLKGAGFESSYYMK 655


>gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703]
          Length = 699

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 256/704 (36%), Positives = 373/704 (52%), Gaps = 38/704 (5%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET     + K G   YAE V V++  +  +D PV  WD      MP+ LK  L
Sbjct: 3   KKLWFDSETFCETPI-KNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYL 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEALKL- 118
           ++  + I A NS+F+RT+++      I     RW  T+V A ++GLP  L  + E L + 
Sbjct: 62  QDPSIEIYAQNSHFDRTMMRHDMPSVIAGGIERWRDTMVKALAHGLPGGLGVLCEILGIT 121

Query: 119 -SSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
               K +EGK LI  FCK         R     H E W+ F +Y   D+   R I K+L 
Sbjct: 122 QDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKLP 181

Query: 177 PLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             + + +EL  W+ DQ INDRG  +D  LA      V  E+  L +  ++LT   V ++ 
Sbjct: 182 VWNYQGKELALWHFDQLINDRGVQMDTVLAEAAVTAVVDEQKLLAKRTQNLTDNEVQAAT 241

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             + L   +    G+ L D+ ++T +R ++   +L     ++   R++AS ++  K  TL
Sbjct: 242 QRDALLRHIVESFGVDLPDMQKSTLERRIAD-PELPSVLRELLAIRLQASTTSTSKYKTL 300

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352
           ++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRP    E +D  I  L        
Sbjct: 301 LKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAGCADLL 360

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG------- 405
             + +++IS  +R C++A +GKKLVV+DL+ IE RVLAW+AGE+WKL+AF          
Sbjct: 361 FDNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYD 420

Query: 406 ---------EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
                     DLY   YAR+FN++P  VTK QR IGKVMEL LG+ GG  AF   A   G
Sbjct: 421 EGGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYG 480

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L+L+  A+    N       +A+++ +   +      + +     AC+ +K+ WR  H  
Sbjct: 481 LDLDELANAALPNVPTSIQREAQSWYQASVKQKRTFGLSEQVFI-ACDSLKRMWRNAHPE 539

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--- 573
               W+E+     + I N K     ++  +     ++D + L + LPSGRS+ Y  +   
Sbjct: 540 TVSFWSEIENTVRRAIINPKQTFVCRKLKI-----RRDGSWLRIQLPSGRSVCYPGIRIE 594

Query: 574 GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
           G+  SY+  NT +R+  R  TYGGKL EN  QA +RD++A  M      GY+I LTVHDE
Sbjct: 595 GDKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEARGYEITLTVHDE 654

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++ E PDTD F +  L  L+ +NP WA  LPL A G+E+  YRK
Sbjct: 655 VLTEAPDTDAFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 698


>gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
 gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102]
          Length = 653

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 222/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++     + EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q      K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WA+GL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVEWAEGLNLNSDGFTSPFYMK 652


>gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 653

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 224/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++       E   W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           JH1]
          Length = 653

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 223/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++     + EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q      K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224]
 gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224]
          Length = 653

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 222/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT++ +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMINSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++     + EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q      K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2]
 gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 653

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++     + EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q      K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGVR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
 gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719]
 gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765]
          Length = 653

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++     + EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q      K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
 gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3]
          Length = 653

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++     + EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q      K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYIKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 653

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++     + EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L      T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKAEQGLDIPNLQKKTVQDYLKR---ATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M +D R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCNDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPKDS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410]
          Length = 653

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/705 (31%), Positives = 324/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++     + EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q      K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y   +    S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 653

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 222/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AE+  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++     + EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q      K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLNNDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           132]
          Length = 653

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 224/705 (31%), Positives = 324/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG+ KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++       E   W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K  T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y   +    S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31]
 gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31]
          Length = 656

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 216/703 (30%), Positives = 321/703 (45%), Gaps = 76/703 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S +D+ K G  KYA  +D  ++LFA+  D   V++ D      +P  + 
Sbjct: 1   MRTLNIDIETFSSVDIGKSGAYKYAMSDDFQILLFAYSVDGQDVKIIDLAQGEAIPGEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L++      A+N+ FE   L     ++ P+ +W CT+V     G  + L A+G A+ L
Sbjct: 61  DLLKDETCIKYAYNAVFEWWCL-NMAGIETPLEQWHCTMVHGLYCGYTAGLAAIGNAMGL 119

Query: 119 --SSQKMEEGKELIARFCKG---ETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
               +K+  G  LI  FC             RN P+H  E W LF EYC  DV    EI 
Sbjct: 120 PQDKKKLTTGSALIRYFCIPCNPTKSNGNRTRNLPHHAPEKWELFKEYCIQDVVTEMEIG 179

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+  +E +LW LD  +N  G  VD  L +    I  + R  L +E   +T   +
Sbjct: 180 RRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYIDALSRANLLEEARDIT--KL 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +     +L  WL  E G  +E+L + T  +++ +      +A +V   R   S+++V K
Sbjct: 238 DNPNSTSQLLNWL-EEAGEEVENLQKATVGKMIDTLDD--GKAKRVLEIRQELSKTSVKK 294

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              + EAM  D R+RG LQF GA+RTGR++G +   QNLPR      ++ + +       
Sbjct: 295 YKAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQNLPRNYIETLDVARDVIKKGDGE 354

Query: 351 T---SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +    +S  +R+  I SEG   VV+D + IEARV+AW+AGE+W+++ F+T   
Sbjct: 355 LLEMLYGNIPDTLSQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEEWRMEVFKTHGK 414

Query: 408 LYVTTYARSFNVAPA-----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           +Y  + ++ F V        +     RA GKV ELALGYQG   A   M +         
Sbjct: 415 IYEASASQMFGVPINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAMGAA-------- 466

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                           +        + +   WR+   R+ ELW 
Sbjct: 467 --------------------------------DMGLTDEEMKDIVDRWRKSSKRIVELWY 494

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR----- 577
            L  A  + +E G+  I +  +          ++   + LPSGR L Y            
Sbjct: 495 ALENAAVEVLETGEPQIVKCVKLAKEYDFIYGQDFFTIELPSGRKLFYPKPFLKENQFGQ 554

Query: 578 -----SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                  +N TT++     TYGGKLTENIVQA++RD LAE ++     G+ IV  VHDEI
Sbjct: 555 MQMHYMGINQTTKKWEVIPTYGGKLTENIVQAIARDCLAETLLRVKAKGWPIVFHVHDEI 614

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + + P + E     +   MT   SWAKGL L A G+    Y K
Sbjct: 615 ILDVPKSVE--LEEVIKTMTEEISWAKGLILNAAGFTGSYYMK 655


>gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2]
 gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2]
          Length = 650

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 224/700 (32%), Positives = 320/700 (45%), Gaps = 83/700 (11%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIANK 182

Query: 175 LEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++       E   W  DQ INDRG  +  +L    N +    + +L ++ + +T   + +
Sbjct: 183 IKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--LEN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  E GL + +L + T Q      K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M             
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                       A+E        + +  +WR  +  +   W   
Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRSYLNTT 583
            +A   T+++ K       R          K  L++ LPSGR+L Y   +    S+ +  
Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENSWGSQV 550

Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                    R+ ++  TYGGKL ENIVQA +RD+LA  +      GY IV  VHDE++ E
Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGYKIVGHVHDEVIVE 610

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 611 IPRGS-NGLKEIETIMNKPVEWAKGLNLNSDGFTSPFYMK 649


>gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 653

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/705 (31%), Positives = 325/705 (46%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDDEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++     + EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   + EG +L V+D + IEARV+AW A E+W+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKERWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A]
 gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A]
          Length = 650

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 224/700 (32%), Positives = 322/700 (46%), Gaps = 83/700 (11%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG+ KY  AED  +++ A+  D  P+   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIANK 182

Query: 175 LEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++       E   W  DQ INDRG  +  +L    N +    + +L ++ + +T   + +
Sbjct: 183 IKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--LEN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  E GL + +L + T Q  L   K  T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KVATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M             
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                       A+E        + +  +WR  +  +   W   
Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRSYLNTT 583
            +A   T+++ K       R          K  L++ LPSGR+L Y   +    S+ +  
Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENSWGSQV 550

Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                    R+ ++  TYGGKL ENIVQA +RD+LA  +      G+ IV  VHDE++ E
Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEVIVE 610

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 611 IPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 653

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 222/705 (31%), Positives = 323/705 (45%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AE+  +++ A+  D   +   D       P    
Sbjct: 1   MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++     + EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  + GL + +L + T Q      K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
 gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12]
 gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299]
          Length = 650

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/700 (31%), Positives = 320/700 (45%), Gaps = 83/700 (11%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIANK 182

Query: 175 LEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++       E   W  DQ INDRG  +  +L    N +    + +L ++ + +T   + +
Sbjct: 183 IKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--LEN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  E GL + +L + T Q      K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M             
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                       A+E        + +  +WR  +  +   W   
Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRSYLNTT 583
            +A   T+++ K       R          K  L++ LPSGR+L Y   +    S+ +  
Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENSWGSQV 550

Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                    R+ ++  TYGGKL ENIVQA +RD+LA  +      G+ IV  VHDE++ E
Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEVIVE 610

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 611 IPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
 gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748]
          Length = 644

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 217/695 (31%), Positives = 311/695 (44%), Gaps = 75/695 (10%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
            L ID ET S   + K G  +Y +D    ++LFA+ FDD PVE+ D      +P+ + +A
Sbjct: 2   ELSIDVETYSDCPI-KYGAQRYVDDTTFEILLFAYSFDDEPVEVIDMT-KDPLPERVVDA 59

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L N ++T  A N+ FE   LK  F  D     W CT VLA    LP++L  V +AL+L  
Sbjct: 60  LYNKEITKTAFNAAFEMLCLKKYFP-DADYTNWECTSVLALYCSLPASLDNVSKALRLGE 118

Query: 121 QKMEEGKELIARFC---KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR--L 175
            K   GK LI  F    K             +  E W  + EY + DV V R I KR   
Sbjct: 119 AKDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEYIEYNRQDVVVERAIRKRLLS 178

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
               + E E W LDQ IN RG  VD+ L        D    +  +  + LT   + +   
Sbjct: 179 LKPPAIEHEYWLLDQDINWRGVKVDMELVDAALACNDEIVEEATESSKILTG--LENPNS 236

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
             +LK WL    G  LE + +     +L+    +     +V  NR     S++ K   + 
Sbjct: 237 TMQLKEWLTARLGYDLETMRKDDVSNLLAQ--DIPSDVRKVLQNRQVLGNSSIKKYLAMK 294

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII---THLPTSITS 352
            A+ SDGR+ G LQF GA R+GRW+G V   QNLPR      +  + +     +      
Sbjct: 295 NAVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQNLPRNYLEDLDTARDVLKSRDVEMLDLL 354

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
             +P  +I   +R+ ++A +G + +VAD + IEARV+AW+A E+W+   F  G D+Y  +
Sbjct: 355 YGNPGDVIKQLIRTALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGGDIYCAS 414

Query: 413 YARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            +  F+V   +       R  GKV ELALGY GG  A + M S   +             
Sbjct: 415 ASSMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVGAMKAMDSKGEIPE----------- 463

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                              + +AWRQ   R+++ W +   A +Q
Sbjct: 464 ------------------------------KELPGIIEAWRQASPRITKFWKDADSAAKQ 493

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRS--------YL 580
            +  G+ +    R     +   K K  L + LPSGR L Y    +G N+          +
Sbjct: 494 VVRTGEPV----RIIQGNIKFFKSKGFLFIELPSGRRLAYARPRLGLNQFGSESIEYDGM 549

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           +       R  TYGGKL ENIVQAV+RD LA  M+  +KAGY IV  +HDE+V E P   
Sbjct: 550 DQVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKAGYKIVAHIHDEVVIEAPIG- 608

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             +   +  +M     W +GL L A G+E+  Y K
Sbjct: 609 VGSLEEVIDIMCEPEPWNEGLILNAAGFENPYYMK 643


>gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
 gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300]
          Length = 653

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 223/705 (31%), Positives = 325/705 (46%), Gaps = 83/705 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++     + EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 TIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   + EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y        S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +R++LA  +     +G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARELLAISIARLEASGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652


>gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754]
 gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 650

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 222/700 (31%), Positives = 321/700 (45%), Gaps = 83/700 (11%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK 182

Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++     + EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T   + +
Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--LEN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  + GL + +L + T Q      K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M             
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                       A+E        + +  +WR  +  +   W   
Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTT 583
            +A   T+++ K       R          K  L++ LPSGR+L Y        S+ +  
Sbjct: 497 QEAAINTVKSRKTHHTHGVR------FYMKKGFLMIELPSGRALAYPKASVGENSWGSQV 550

Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                    R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE++ E
Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVE 610

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 611 IPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
 gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819]
 gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796]
          Length = 650

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 222/700 (31%), Positives = 321/700 (45%), Gaps = 83/700 (11%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK 182

Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++     + EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T   + +
Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--LEN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  + GL + +L + T Q      K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M             
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                       A+E        + +  +WR  +  +   W   
Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTT 583
            +A   T+++ K       R          K  L++ LPSGR+L Y        S+ +  
Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENSWGSQV 550

Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                    R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE++ E
Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVE 610

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 611 IPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35]
 gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35]
          Length = 650

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 226/700 (32%), Positives = 325/700 (46%), Gaps = 83/700 (11%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSNNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL + DV   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIANK 182

Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++     + EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T   + +
Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--LEN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKDQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQ--RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  + ++ FNV    +TK    R  GKV ELALGYQGGA A + M             
Sbjct: 417 KIYEASASQMFNVPVESITKGDSLRQKGKVSELALGYQGGAGALKAMG------------ 464

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                       A+E        + +  +WR  +  +   W   
Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTT 583
            +A   T+++ K       R          K  L++ LPSGR+L Y        S+ +  
Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENSWGSQV 550

Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                    R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE++ E
Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVE 610

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 611 IPKDS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL]
 gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL]
          Length = 650

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 222/700 (31%), Positives = 321/700 (45%), Gaps = 83/700 (11%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
            +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK 182

Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++     + EQ  W  DQ INDRG  +  +L    N +    + +L  + + +T   + +
Sbjct: 183 IKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--LEN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  + GL + +L + T Q      K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDDQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M             
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                       A+E        + +  +WR  +  +   W   
Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTT 583
            +A   T+++ K       R          K  L++ LPSGR+L Y        S+ +  
Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENSWGSQV 550

Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                    R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE++ E
Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVE 610

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 611 IPRGS-NGLKEIETIMNKPADWAKGLNLNSDGFTSPFYMK 649


>gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11]
          Length = 650

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 224/700 (32%), Positives = 321/700 (45%), Gaps = 83/700 (11%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P     +  K
Sbjct: 3   IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPVHADYETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
            SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QSQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMTIANK 182

Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++       EQ  W  DQ INDRG  +  +L    N +    + +L ++ + +T   + +
Sbjct: 183 IKDFPVTEIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--LEN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L  WL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     +      
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD 356

Query: 353 DPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
           D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  F T  
Sbjct: 357 DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG 416

Query: 407 DLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M             
Sbjct: 417 KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------------ 464

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                       A+E        + +  +WR  +  +   W   
Sbjct: 465 ----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKAC 496

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTT 583
            +A   T+++ K       R          K  L++ LPSGR+L Y        S+ +  
Sbjct: 497 QEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENSWGSQV 550

Query: 584 --------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                    R+ ++  TYGGKL ENIVQA +RD+LA  +     + + IV  VHDE++ E
Sbjct: 551 VEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASVFKIVGHVHDEVIVE 610

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 611 IPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649


>gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
 gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme
           DSM 15981]
          Length = 668

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 212/708 (29%), Positives = 305/708 (43%), Gaps = 80/708 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE- 59
            L ID ETRS +D++K G  +YA+  D  ++LFA+ +DD PVE+ D   D   P  + E 
Sbjct: 5   HLSIDIETRSSVDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTADESFPPEIWEE 64

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL- 118
           AL + DV   A+N+ FE   L        P+ +W CT+      G  + L A G+A+ L 
Sbjct: 65  ALRDPDVIKHAYNAAFEWYCLNRA-GYATPLDQWRCTMAHGLYCGYTAGLDATGKAIGLP 123

Query: 119 -SSQKMEEGKELIARFC---KGETHECLYDRNKP-NHREAWRLFGEYCKGDVTVTREIFK 173
              QK+  GK LI  FC   K          N+P +  + W LF EYC+ DV    EI +
Sbjct: 124 QDKQKLAVGKALIRYFCVPCKPTKSNGGRTWNQPRHDPDKWTLFKEYCRQDVVTEHEILR 183

Query: 174 RLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           RL   P+   E+ LW LD  +N  G  VD  L      + +V   KL  E   LT   + 
Sbjct: 184 RLNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVSTEKLTAEAVELTG--LD 241

Query: 232 SSRCLEKLKTWLFLETGLHLED------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           +     +L  W+      H +D      L + T +  L     L     ++   R +  +
Sbjct: 242 NPNSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLPEDVARMLEIRQQLGK 301

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           ++V K   +  A     R+RG  Q+ GA+RTGRW+G +   QNLPR      +  + +  
Sbjct: 302 TSVKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLPRNYLKTLDYARELVK 361

Query: 346 LPT---SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                       +    +S  +R+  I SEG K VVAD + IEAR +AW+AGEQW  + F
Sbjct: 362 AKNYDGLRILYGNVPDTLSQLIRTAFIPSEGHKFVVADFSAIEARAIAWLAGEQWVNEVF 421

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKD-----QRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            T   +Y  T A+ F V   ++TK       R  GKV  LALGYQG   A   M      
Sbjct: 422 ATHGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQGSTAALIAMG----- 476

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                              A++          +   WR  + R+
Sbjct: 477 -----------------------------------ALKMGLTEDELPDIVTRWRNANKRI 501

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGN 575
             LW  +     + ++  +              +   ++ L + LPSGR L Y    +  
Sbjct: 502 CGLWYAVENTALRVMQTAQPQGLNGLIFALEGDLIYGQSFLTVRLPSGRKLYYPKPFLQE 561

Query: 576 NRS--------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
           NR          +   TR+   + TYGGK+TENIVQA++RD LA  +    + G   V  
Sbjct: 562 NRFGKQAIHYYAVGQQTRKWEIDSTYGGKMTENIVQAIARDCLAVTLRRIAQKGLQTVFH 621

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VHDE++ + P   E     +  LM     WA GL LK  G+ES  Y K
Sbjct: 622 VHDEVIIDAP--METTVDEICDLMAEPIPWAPGLILKGAGFESSYYMK 667


>gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1]
 gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1]
 gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1]
 gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1]
          Length = 688

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 270/694 (38%), Positives = 380/694 (54%), Gaps = 26/694 (3%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+TLF+D ET   + +   G   YAE   V+LFA+  D+ PV +WD      MP  L+ A
Sbjct: 1   MSTLFLDLETYCEVPIQN-GTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWA 59

Query: 61  LENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           L + +V + AHNS+F+RTVL+    +  + + RW  T+V A ++ LP AL  + + LK+ 
Sbjct: 60  LIDENVALCAHNSHFDRTVLRHAMPDYPLALPRWRDTMVKALAHSLPGALGDLCDILKVP 119

Query: 120 SQK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           + K   + GK+LI  FCK         R  +  H   W  F EY   D+   R I ++L 
Sbjct: 120 TDKAKDKAGKQLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKLP 179

Query: 177 PLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             + +  EL  W+LDQTINDRG  VD  LAH   + V+  +  L      +T G V ++ 
Sbjct: 180 AWNYQGTELALWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAAT 239

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             + +   +    GL L D+ ++T +R ++    L  +  ++   R++AS ++  K  TL
Sbjct: 240 QRDAMLRHVLAAYGLDLPDMQQSTLERRIAD-PDLPAELRELLGIRLQASTTSTSKYKTL 298

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS-- 352
            + ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRP    + +++ I  L        
Sbjct: 299 AKGVSSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLL 358

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----ED 407
             + +++ S  +R C++A EGKKLVVADL+ IE R++AW+AGE WKL AF         D
Sbjct: 359 FANVMELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPD 418

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           LY   YA++F V+P  V KDQR IGKVMEL LGY+GG  AF   A+T G++L+  A    
Sbjct: 419 LYKLAYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMADAAW 478

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            +   +   +AE F  W  E               C+ +K+ WR+ H  VS  W EL +A
Sbjct: 479 PSIPADIIAEAEQFLAWRTEQRLGDFGLKPKTFVVCDALKRLWRRAHPAVSSFWKELEEA 538

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYL--N 581
               +            D   +  ++D   L + LPSGR L Y     D     SY+  N
Sbjct: 539 ARLAVLRPGTT-----YDCRTLKARRDGAWLRIRLPSGRFLCYPSPQLDDAGKLSYMGVN 593

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
             +R+ +R  TYGGKL EN+ QA SRD+LA  M     AGY IVL+VHDE + E  D DE
Sbjct: 594 QYSRKWSRLKTYGGKLAENVTQAASRDVLAANMPAIEAAGYQIVLSVHDENITEADDRDE 653

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           F+A+ L  LM +NP WA GLPL A G+E+ RYRK
Sbjct: 654 FSAAHLAGLMATNPPWAAGLPLAAAGFEAYRYRK 687


>gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens
           FD-1]
          Length = 654

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 198/709 (27%), Positives = 309/709 (43%), Gaps = 90/709 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  D+++CG+ +YAE     ++L ++  D  PV   D      +P  + 
Sbjct: 1   MKQLTIDIETASDEDISECGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLPDEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACF--------------NLDIPIHRWICTLVLARSNG 104
            AL +  V   A N  FER  L                     I    W C ++ +R  G
Sbjct: 61  SALTDKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCDMIHSRYLG 120

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR--NKPNHREAWRLFGEYCK 162
           + S+L  +G+ L+L  +K++EGK+LI  FC     +       +K +  + W+ F EY +
Sbjct: 121 MMSSLDDMGKLLRLKEKKLDEGKDLIKYFCTLHQDKQGNLLFYDKSDAPKKWKEFIEYNR 180

Query: 163 GDVTVTREIFKRL--EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            DV V  +I + L   P+     E +Y+DQ INDRG  VD   A    ++    + +L  
Sbjct: 181 RDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDSNVKKELFP 240

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +L+ LT   + +     ++K WL +  G+  + L + +   +L           +V    
Sbjct: 241 KLKELT--RLDNPNSPAQMKDWL-MRQGIEADSLDKKSMPLLL---ASAPDDVKEVLMLY 294

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            + S+S+V K +T++ A   DGR RG   F GA+RTGR++G +   QNLP+    +    
Sbjct: 295 QQLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNLPQNHLDNLAET 354

Query: 341 QIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           + +     L        D   ++S  +R+  I  EGKK VVAD + IEARV++W+AGE W
Sbjct: 355 KWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEARVISWLAGETW 414

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +++AF  GED+Y    A+ F V   +       R  GK+ ELA GY G   A + M    
Sbjct: 415 RMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGSIGAIKAMG--- 471

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                                  E          + + WR+   
Sbjct: 472 -------------------------------------GTELNLTDDELYSLVEDWRKTSP 494

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            + +LW+++     + I +  ++   +      +    +   L + LPSGR L Y     
Sbjct: 495 NIVKLWSDVQSVAVKVITDQSSMTFGR------LKFSYEIGILFIELPSGRRLAYVRPKV 548

Query: 576 N--------RSYLNTTT-RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
                     +Y      ++  R  TYG KL ENI Q ++RD+L   M        DIV 
Sbjct: 549 EKDDNGKTIITYEGVGDNKKWLRLETYGAKLVENITQGIARDLLLHSMAAM--KDMDIVG 606

Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            VHDE++ E           + HLM   P WA+GL L+A+GYE + Y K
Sbjct: 607 HVHDEVIVECDPD--TTVVQVCHLMEQTPDWAEGLLLRADGYECEFYMK 653


>gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 643

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 202/699 (28%), Positives = 299/699 (42%), Gaps = 81/699 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S ID+ K G  +YA  E   ++LFA+ FD   V++ D  +   +P  + 
Sbjct: 1   MRHLSIDIETFSDIDIQKAGAYRYAQSEQFRIMLFAYSFDGEEVQVVDLENGEEIPHFIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL++ +V   A+N+ FE   L  C  +  P+ +W CT+V A    LP+ L   GEAL +
Sbjct: 61  TALQDMEVIKHAYNAAFEWYCL-NCAGIKTPLDQWQCTMVHAMYLSLPAGLANTGEALGI 119

Query: 119 SSQKMEE--GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +  K +   GK+LI  FC          +        W+ F EY + DV    EI  RL 
Sbjct: 120 AEDKKKSAVGKQLIRYFCV---------KPYKPDAVKWKAFKEYNRQDVVSEMEIENRLS 170

Query: 177 --PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             P+   E E W  D  +N  G  VD  L +   +I +    +L  E   LT   + +  
Sbjct: 171 GFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQEQCEEELLNEAVRLT--QLENPN 228

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              +L  W+  + G  LE+  + T +  L     L  +  +V   R +  +++V K   +
Sbjct: 229 SPTQLLNWVNAQ-GYPLENTQKATIESALKE--DLPLKVRRVLEIRQQLGKTSVKKYEAM 285

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI---ITHLPTSIT 351
              +    R+RG  QF GAS+TGR+SG +   QNLPR         +         T   
Sbjct: 286 TNTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYLEPLAETRECVKRQDYETLKL 345

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                   +S  +R+  I S G + VVAD + IEARV+AW+A E W  + F T   +Y  
Sbjct: 346 LFDSIPDTLSQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKETWVQEVFATHGKIYEA 405

Query: 412 TYARSFNVAPAQVTKDQRAIG-----KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           T ++ F+V   ++ K           KV  LALGYQGG  A   M               
Sbjct: 406 TASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALISMG-------------- 451

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                     A++          +   WR  + R+  LW+ +  
Sbjct: 452 --------------------------ALKMGLSEEELPEIVTRWRAANQRIVALWSAVGS 485

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY----- 579
              +T+ +G+A             +K     L + LPS R L Y    +G N+       
Sbjct: 486 YALRTVRDGRARQVNGLIFRMEQDLKHGLRFLTIELPSKRKLFYCKPYIGLNQFGGESLY 545

Query: 580 ---LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
               N TT++     T+GGKL ENIVQ ++RD L E +   T  GY IV  VHDE++ + 
Sbjct: 546 FYTQNQTTKKWEESSTFGGKLVENIVQGIARDCLCETLDRITSKGYRIVFHVHDEVIVDA 605

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               +     L  +M     WAKGL LK  G+  + Y+K
Sbjct: 606 --GMDLTVEELCGIMAEPIPWAKGLILKGAGFSGQFYQK 642


>gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 654

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 202/700 (28%), Positives = 302/700 (43%), Gaps = 72/700 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET SP D++  G+ KY+E  +  ++LF++ +    V + D      +P  + 
Sbjct: 1   MRHLNIDIETYSPNDIS-FGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVV 59

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L+  +V   A+N+ FE T L         + +W CT++     G P  L  +G+AL L
Sbjct: 60  LDLKRDEVIKHAYNAQFEITCLNRA-GYQTFVEQWRCTMIHGAYLGYPMGLAKLGKALGL 118

Query: 119 SSQKMEE--GKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
           +  KM++  G  LI  F   CK         RN P H  + W  +  Y K DV    E +
Sbjct: 119 TQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDKWAAYIAYNKQDVVTEMECY 178

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +RL   P+  + ++ W +D  +N  G  +D  L      I +  +  L +E   LT   +
Sbjct: 179 RRLSAFPVPEEVEKQWQVDIRMNATGVGIDRQLVDGALTIDEENKKALLEEAYELTG--L 236

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           S+     +L  WL   T L LE LT+ +     ++       A +V   R + ++S+V K
Sbjct: 237 SNPNSRNQLLDWLNSNTNLELEKLTKDSVA---AAMTDADDLAKKVLTIRKKLAKSSVSK 293

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT-- 348
              +  A   DGRLRGTLQF GA+RTGRW+G +   QNLPR   ++ +  + +       
Sbjct: 294 YEMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVKASNRV 353

Query: 349 -SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  D    +S  +R+ +IA EG  L VAD + IEARV+AW++GE W+ K F  G D
Sbjct: 354 GLGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVFAEGGD 413

Query: 408 LYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +Y  + +  F V   +       R  GKV ELALGYQGG  A + M              
Sbjct: 414 IYCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMG------------- 460

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                      A++          +   WRQ    + + W  + 
Sbjct: 461 ---------------------------ALDMGLTEEELPNIVGLWRQASPNIVKFWYTVE 493

Query: 526 QAFEQTIENGKAIIA-RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS------ 578
           +A   T+  G  +           V        + + LPSGR L Y D     +      
Sbjct: 494 KAAVYTVTTGNPMTLDHGITFRLEVDPFYGYRYMTIELPSGRKLFYPDPHIKLNNFDKEA 553

Query: 579 --YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
             +          E TYGGKL ENI QAV+RD LA  +M  +  G   ++ +HDE V E 
Sbjct: 554 VHFKTQLNNAWVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIHDEAVIEV 613

Query: 637 PDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P  +      ++         WA+GL L A G+ +  Y K
Sbjct: 614 PKDEADEYLDIVEKTFALPIPWAEGLALTAAGFTNDYYMK 653


>gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G]
          Length = 726

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 249/730 (34%), Positives = 344/730 (47%), Gaps = 59/730 (8%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M+ LF+DFET S  DL K G   YAE     V++  + FDD PV++WDC +   MP  L 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60

Query: 59  EALE-----NTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            AL      N+ + +V HN   F+R ++K C+  DIP+   I T++ A  + LP +L A+
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +S+   K + GK LI RF K         R     H + W LF +Y   D+T  R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E+F +L     S  E  +  LDQ INDRG+ VDVALA    + V+  + +L +E +    
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+          + +  ++T   +  ++  L   A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILRELAPAH---RIHNAQKSTLNDL-LADDDLPDDARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346
             K N L+   +SD R RG +Q+ GA RT R++G  F PQNL R     +ELD+ I+ L 
Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPA---QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           D+Y  T  + F + P    +  KD R IGK  EL LGY GG  AF + A   GL+L   A
Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMA 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENH------------PEHAIEDLFIGTACERVKKAWR 511
             +        W        W +                   I D  +   C+ +K+ WR
Sbjct: 477 KTMDGTFPDYIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWR 536

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM--------KKDKNNLILMLP 563
           + H      W ++  A    I N         R V             K     L + LP
Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596

Query: 564 SGRSLVYR------------------DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           SGR + Y                   +V       N  TRQ   +YTY GKL EN  QA+
Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            RD+LA  ++N    GY IVL VHDEI+CETPD  E+N + L  LM   P WA+G PL A
Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716

Query: 666 EGYESKRYRK 675
           EG E KRY K
Sbjct: 717 EGAEMKRYAK 726


>gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H]
          Length = 726

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 248/730 (33%), Positives = 343/730 (46%), Gaps = 59/730 (8%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M+ LF+DFET S  DL K G   YAE     V++  + FDD PV++WDC +   MP  L 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60

Query: 59  EALE-----NTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            AL      N+ + +V HN   F+R ++K C+  DIP+   I T++ A  + LP +L A+
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +S+   K + GK LI RF K         R     H + W LF +Y   D+T  R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E+F +L     S  E  +  LDQ INDRG+ VDVALA    + V+  + +L +E +    
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+          + +  ++T   +  ++  L   A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILRELAPAH---RIHNAQKSTLNDL-LADDDLPDDARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346
             K N L+   +SD R RG +Q+ GA RT R++G  F PQNL R     +ELD+ I+ L 
Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPA---QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           D+Y  T  + F + P    +  KD R IGK  EL LGY GG  AF + A   GL+L    
Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMT 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENH------------PEHAIEDLFIGTACERVKKAWR 511
             +        W        W +                   I D  +   C+ +K+ WR
Sbjct: 477 KTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWR 536

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM--------KKDKNNLILMLP 563
           + H      W ++  A    I N         R V             K     L + LP
Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596

Query: 564 SGRSLVYR------------------DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           SGR + Y                   +V       N  TRQ   +YTY GKL EN  QA+
Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            RD+LA  ++N    GY IVL VHDEI+CETPD  E+N + L  LM   P WA+G PL A
Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716

Query: 666 EGYESKRYRK 675
           EG E KRY K
Sbjct: 717 EGAEMKRYAK 726


>gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 270/726 (37%), Positives = 366/726 (50%), Gaps = 63/726 (8%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     +P  L  AL 
Sbjct: 10  ILWGDLETYSPVPMAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALH 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
           +  V +  HNS+F+RTVL     +DIP+ RW  ++  A ++ LP AL  + E L++  + 
Sbjct: 69  DPAVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEH 127

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K ++GK L+A FCK     C   R  +  H   W  F EY + DV   R++ KRL   +
Sbjct: 128 AKDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHN 187

Query: 180 S--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  LW+LDQTINDRG  +D  L     + V+  +  L Q  E+LT G V ++   +
Sbjct: 188 YAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRD 247

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   L    G+ L D+ + T  R +  +  L     ++ + R +AS ++  K   L+  
Sbjct: 248 ALLQHLNTAHGVALPDMQQHTVARCV-DDPALPETVRELLSIRRQASSTSTAKYQALLHC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +          D
Sbjct: 307 TSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVFDD 366

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408
            + + S  +RSC+IA + KKLVVADL+ IE RVLAW+AGE  KL AF   +         
Sbjct: 367 VMALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGTW 426

Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435
                                            Y   YA SF +AP  V+K+QR IGKV 
Sbjct: 427 HTGAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQ 486

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
           ELALGY GG  AF   A+   ++L   A        P   + A     W + NH      
Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAAQAAL--PPLLLQQATELLEWTKANHRPTFDL 544

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETA-----HTCCGITVQYRR 599

Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG++
Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFD 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 TYRYRK 725


>gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c]
 gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c]
          Length = 726

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 270/726 (37%), Positives = 366/726 (50%), Gaps = 63/726 (8%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     +P  L  AL 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALH 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
           +  V +  HNS+F+RTVL     +DIP+ RW  ++  A ++ LP AL  + E L++  + 
Sbjct: 69  DPGVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEH 127

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K ++GK L+A FCK     C   R  +  H   W  F EY + DV   R++ KRL   +
Sbjct: 128 AKDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHN 187

Query: 180 S--KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  LW+LDQTINDRG  +D  L     + V+  +  L Q  E+LT G V ++   +
Sbjct: 188 YAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRD 247

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   L    G+ L D+ + T  R +  +  L     ++ + R +AS ++  K   L+  
Sbjct: 248 ALLQHLNTAHGVALPDMQQHTVARCV-DDPALPETVRELLSIRRQASSTSTAKYQALLHC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +          D
Sbjct: 307 TSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDLVFDD 366

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408
            + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF   +         
Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGCW 426

Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435
                                            Y   YA SF +AP  V+K+QR IGKV 
Sbjct: 427 HTGAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQ 486

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
           ELALGY GG  AF   A+   ++L   A        P   ++A     W + NH      
Sbjct: 487 ELALGYGGGVGAFAAFAALYHIDLEAMAAQ--AVFPPLLLQEATELLEWTKANHRPTFDL 544

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETT-----HTCCGITVQYRR 599

Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG++
Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFD 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 TYRYRK 725


>gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
 gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396]
          Length = 911

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 109/705 (15%), Positives = 203/705 (28%), Gaps = 162/705 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T   D ET S           Y E   ++  +F  +          HD           
Sbjct: 332 KTFSFDTETTSLN---------YME-AEIVGVSFAVEPGKAAYVPVAHDYMGAPEQLERD 381

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            +   LK  LE+     +  N  ++  VL     + +       T++ +      +    
Sbjct: 382 KVLAALKPLLEDPAYRKIGQNLKYDAHVLANH-GVQLNGIA-EDTMLESYVLNSTAN--- 436

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                +     +   K L       E       +    ++ +    G Y   D  +T ++
Sbjct: 437 -----RHDMDTLAS-KHLGRETIHFEDIAGKGAKQLTFNQISLEQAGPYAAEDADITLQL 490

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   +  RG  VD     T +Q +     +L++
Sbjct: 491 HHALNPKLKKEGRLEQVYRDIELPLVPVLMRMEHRGALVDSQRLRTHSQELAERMLELEE 550

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETG----LHLEDLTETTCQRVLSSNKKLTPQAIQV 276
           E          +    ++L+   + + G            +T + VL    +       +
Sbjct: 551 EAYEKAGQK-FNLGSPKQLQEIFYEKLGFDIIKKTPKGQPSTAEPVLQELAEKYELPRVL 609

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   S+      + L E +N       T      + TGR S      QN+P  +   
Sbjct: 610 LEYR-GLSKLKSTYTDKLPEMINPRTGRVHTSYQQAVAATGRLSSSDPNLQNIPVRNEQG 668

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA +G KL+ AD + IE R++A ++G++
Sbjct: 669 RR-------------------------IRQAFIAPKGCKLISADYSQIELRIMAHLSGDE 703

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF  G D++  T A  FNVA  +V+ +QR   K +                    G
Sbjct: 704 GLLKAFSEGLDVHQATAAEVFNVAFDEVSSEQRRKAKAIN--------------FGLIYG 749

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    A  +                                  +  +     + +++  
Sbjct: 750 MSAFGLARQIHVE------------------------------RSEAQSYIDKYFERYPG 779

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V    N +    + T                            +    GR L   D+ ++
Sbjct: 780 VLNYMNRIRAEAQDT--------------------------GYVETLFGRRLYLPDIRSS 813

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVH 629
                   +   R            +Q  + DI+   M+               +++ VH
Sbjct: 814 N---RNLQQAAERTAINAP------MQGTAADIIKRAMLAVDAWLEGDSAPPAKMIMQVH 864

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE++ E  ++        L  +M+S       +PL  E      +
Sbjct: 865 DELILEVEESAVEAVKEKLTQIMSSAAD--LNVPLLVEAGVGNNW 907


>gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3]
 gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2]
          Length = 726

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 248/730 (33%), Positives = 344/730 (47%), Gaps = 59/730 (8%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M+ LF+DFET S  DL K G   YAE     V++  + FDD  V++WDC     MP  L 
Sbjct: 1   MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLH 60

Query: 59  EALE-----NTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            AL      N+ + +V HN   F+R ++K C+  DIP+   I T++ A  + LP +L A+
Sbjct: 61  RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +S+   K + GK LI RF K         R     H + W LF +Y   D+T  R
Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E+F +L     S  E  +  LDQ INDRG+ VDVALA    + V+  + +L +E +    
Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+          + +  ++T   +  ++  L   A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILRELAPAH---RIHNAQKSTLNDL-LADDDLPDDARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL- 346
             K N L+   +SD R RG +Q+ GA RT R++G  F PQNL R     +ELD+ I+ L 
Sbjct: 297 STKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALL 356

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPA---QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           D+Y  T  + F + P    +  KD R IGK  EL LGY GG  AF + A   GL+L   A
Sbjct: 417 DIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMA 476

Query: 464 HLVKTNSAPEEWEDAENFCRWMQ------------ENHPEHAIEDLFIGTACERVKKAWR 511
             +        W        W +            ++     I D  +   C+ +K+ WR
Sbjct: 477 KTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWRTCDAIKRMWR 536

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM--------KKDKNNLILMLP 563
           + H      W ++  A    I N         R V             K     L + LP
Sbjct: 537 ESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLP 596

Query: 564 SGRSLVYR------------------DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           SGR + Y                   +V       N  TRQ   +YTY GKL EN  QA+
Sbjct: 597 SGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQAL 656

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            RD+LA  ++N    GY IVL VHDEI+CETPD  E+N + L  LM   P WA+G PL A
Sbjct: 657 CRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVA 716

Query: 666 EGYESKRYRK 675
           EG E KRY K
Sbjct: 717 EGAEMKRYAK 726


>gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40]
 gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40]
          Length = 926

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 106/705 (15%), Positives = 207/705 (29%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S           Y E   V+  +F             HD            + 
Sbjct: 351 AFDTETTSLN---------YME-AKVVGVSFAVAPGEAAYVPFGHDYLGAPEQLSEEQVL 400

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
             LK  LE+ +V  V  N  ++ +VL     + +       T++ +      +    +  
Sbjct: 401 GKLKPLLEDENVKKVGQNLKYDASVLANH-GIALQGIA-FDTMLESYVVNSTANRHDMDT 458

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +  A          G   I+     E       +    ++        Y   D  +T  +
Sbjct: 459 LALAH--------LGHTNISF----EEIAGKGAKQLTFNQIQLDQAAPYAAEDADITLRL 506

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   +   G  +D  +    +  +  +  ++ +
Sbjct: 507 HQALWPQVEAVEGIKSLFENVELPLVPVLSKVERTGALIDATILGQQSAELAADLERIQR 566

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           E   L      +    ++L   LF + G+ +   T+    +T + VL       P    +
Sbjct: 567 EAWELAG-EEFNLASPKQLGVILFEKLGIPVIKKTKTGAPSTAEEVLQELALDYPLPALL 625

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  + +
Sbjct: 626 LEQR-GLAKLKSTYTDKLPTMINPHTGRVHTSYNQAV-TATGRLSSTDPNLQNIPIKTEA 683

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       VR   IA EG ++V AD + IE R++A ++G+
Sbjct: 684 GRR-------------------------VRKAFIAPEGYRIVAADYSQIELRIMAHLSGD 718

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +    AF  G D++  T A  F  +   VT +QR   K +                    
Sbjct: 719 EGLTNAFNQGLDVHSATAAEVFGTSVESVTPEQRRSAKAINF--------------GLIY 764

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +R    +  ++ 
Sbjct: 765 GMS------------------------------AFGLARQLHIGRNDAQRYIDTYFDRYP 794

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V+    ++    ++                          +  +    GR L   ++  
Sbjct: 795 GVARYMEDIRVFAKE--------------------------HGYVETLMGRRLYLPEINA 828

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
           +            R            +Q  + DI+ + M++        K    +++ VH
Sbjct: 829 SNGMRRQA---AERTAINAP------MQGSAADIIKKAMIDVDKWLSTLKVDAKMIMQVH 879

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +       + L  +M++       +PL  E      +
Sbjct: 880 DELVLEVAEDQIEPVTATLCDIMSAALK--LDVPLLVEAGVGMNW 922


>gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 669

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 245/673 (36%), Positives = 358/673 (53%), Gaps = 37/673 (5%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH- 91
             +  +D PV  WD      MP+ LK  L++  + I A NS+F+RT+++      I    
Sbjct: 3   ITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFDRTMMRHDMPSVIAGGI 62

Query: 92  -RWICTLVLARSNGLPSALKAVGEALKL--SSQKMEEGKELIARFCKGETHECLYDR-NK 147
            RW  T+V A ++GLP  L  + E L +     K +EGK LI  FCK         R   
Sbjct: 63  ERWRDTMVKALAHGLPGGLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNSTIHRATS 122

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAH 205
             H E W+ F +Y   D+   R I K+L   + + +EL  W+ DQ INDRG  +D  LA 
Sbjct: 123 KTHPEEWKRFLKYAGNDIEAMRAIDKKLPVWNYQGKELALWHFDQLINDRGVQMDTVLAE 182

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
                V  E+  L +  ++LT   V ++   + L   +    G+ L D+ ++T +R ++ 
Sbjct: 183 AAVTAVVDEQKLLAKRTQNLTDNEVQAATQRDALLRHIVESFGVDLPDMQKSTLERRIAD 242

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             +L     ++   R++AS ++  K  TL++ ++ DGRLRGTLQF GASRTGRW+G +F 
Sbjct: 243 -PELPSVLRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQ 301

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
           PQNLPRP    E +D  I  L          + +++IS  +R C++A +GKKLVV+DL+ 
Sbjct: 302 PQNLPRPVLDQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKLVVSDLSN 361

Query: 384 IEARVLAWMAGEQWKLKAFETG----------------EDLYVTTYARSFNVAPAQVTKD 427
           IE RVLAW+AGE+WKL+AF                    DLY   YAR+FN++P  VTK 
Sbjct: 362 IEGRVLAWLAGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNISPDDVTKL 421

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR IGKVMEL LG+ GG  AF   A   GL+L+  A+    N       +A+++ +   +
Sbjct: 422 QRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQSWYQASVK 481

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                 + +     AC+ +K+ WR  H      W+E+     + I N K     ++  + 
Sbjct: 482 QKRTFGLSEQVFI-ACDSLKRMWRNAHPETVSFWSEIENTVRRAIINPKQTFVCRKLKI- 539

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIV 602
               ++D + L + LPSGRS+ Y  +   G+  SY+  NT +R+  R  TYGGKL EN  
Sbjct: 540 ----RRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKLAENAT 595

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLP 662
           QA +RD++A  M      GY+I LTVHDE++ E PDTD F +  L  L+ +NP WA  LP
Sbjct: 596 QAAARDVMANNMPLIEARGYEITLTVHDEVLTEAPDTDAFTSDKLSELLATNPEWALDLP 655

Query: 663 LKAEGYESKRYRK 675
           L A G+E+  YRK
Sbjct: 656 LSAGGFEAYHYRK 668


>gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
 gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC
           49989]
          Length = 666

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 223/705 (31%), Positives = 311/705 (44%), Gaps = 76/705 (10%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
            L+ID ET S +D+   G+ KYAE  D  V+L A+  DD  VEL D      + Q     
Sbjct: 5   KLYIDIETFSSVDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLVG 64

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           ++  LE+ +    AHN++FE   LK   ++ I   RW CT+V     G P++L+ +GEAL
Sbjct: 65  VRRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMVKGMYRGYPASLEKMGEAL 124

Query: 117 KLSSQ--KMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTRE 170
            +     K+  GK LI  F   CK         RN P H  E W LF EYCK DV V RE
Sbjct: 125 DMPEDKAKLRTGKALINYFCKPCKPTKTNGGRTRNLPKHASEKWELFREYCKRDVEVARE 184

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           I K L  +       W  D  +N RG  VD AL      I    ++     ++ +T   V
Sbjct: 185 IDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALVEAAIAIDGEVKSAHLDTIKRITG--V 242

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            + R   ++  WL       +  L   + + +L     LT  A  V        +++  K
Sbjct: 243 DNPRSRAQVLDWLNDTLDEEITSLNAASVKALLE--SDLTDDARAVLTAWQGLGKTSTKK 300

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LP 347
             TL  A   D R+RG LQF GASRTGRW+G +  P NLPR    +      +       
Sbjct: 301 YETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVYNLNQAGELVKAGHKK 360

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                       +S  +R+C +  EG K V+ D + IEARVLAW+AGE W L+ F+    
Sbjct: 361 DIELLHGSVPNTLSGLIRTCFVPREGCKFVICDYSAIEARVLAWLAGEHWVLEEFKGDGK 420

Query: 408 LYVTTYARSFNVAPAQVTKDQ-----RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           +Y  T AR +N+  + + K       R  GK+  LALGYQG   A ++M ++        
Sbjct: 421 IYEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGYQGAVGALRQMGAS-------- 472

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                           ED F       + +AWR  +  ++ELW 
Sbjct: 473 --------------------------------EDEFTDDELRGLVRAWRVANPCIAELWR 500

Query: 523 ELHQAFEQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNR 577
                 + T+ +                     +  NL + LPSGR L Y +        
Sbjct: 501 YTEMMAKSTVSDEFYSGTNPMIPISFKSTLNAVNGINLAIGLPSGRELYYHNPVIVDGAI 560

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDE 631
            Y + T    T+E TYGGKL ENIVQA++RD+LA+ +   TK          IVL VHDE
Sbjct: 561 YYTDYTHAGKTKEQTYGGKLVENIVQAIARDVLADAINRITKTLVVGGINAHIVLHVHDE 620

Query: 632 IVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYRK 675
           +V E           L   + ++ PSWA+GLPLK E + S  Y+K
Sbjct: 621 VVVEAEAGCAEKVQELLEGVFSTPPSWAEGLPLKGESFISDYYKK 665


>gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           MR1]
          Length = 631

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 214/684 (31%), Positives = 309/684 (45%), Gaps = 83/684 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++       E   W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             + +     +L  WL  E GL + +L + T Q      K+ T +A ++   R++ S+++
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQ---EYLKEATGKAKKMLEIRLQMSKTS 295

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL+     + 
Sbjct: 296 VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK 354

Query: 348 TSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A EQW+L  
Sbjct: 355 EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV 414

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M        
Sbjct: 415 FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------- 467

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A+E        + +  +WR  +  +  
Sbjct: 468 ---------------------------------ALEMGIEENELQGLVDSWRNANPNIVN 494

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578
            W    +A   T+++ K       R          K  L++ LPSGR+L Y   +    S
Sbjct: 495 FWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKALVGENS 548

Query: 579 YLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           + +           R+ ++  TYGGKL ENIVQA +RD+LA  +      G+ IV  VHD
Sbjct: 549 WGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHD 608

Query: 631 EIVCETPDTDEFNASMLYHLMTSN 654
           E++ E P         +  +M   
Sbjct: 609 EVIVEIPRGS-NGLKEIETIMNKP 631


>gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
 gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684]
          Length = 891

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 106/705 (15%), Positives = 202/705 (28%), Gaps = 166/705 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPV 52
            + +D ET S   L             V+ F F  +          H             
Sbjct: 317 VISVDTETTSLNPLL----------AEVVGFCFAVEPGHGWYVPVGHCGGGAEEQLPRDE 366

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109
           +   ++  LE+  +  V  N  ++  VL+    + +       T++ +           L
Sbjct: 367 VVAQVQPLLEDATLAKVGQNLKYDALVLRRA-GIALR-GVVADTMLQSYLLYPAARSHGL 424

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            A+             G ++I+             +       A  +   Y   D  +T 
Sbjct: 425 DALAA--------DHLGYKMISY----SEVAGTGKKQIGFDEVALDVATRYAAEDADITL 472

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           ++++R +              E  L  +   +   G  VD      L+        +L+Q
Sbjct: 473 QLYQRFDAELDGTLRELFETVEMPLLQVLIDMEWWGVRVDRERLDALSAGFSTSIKQLEQ 532

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           ++  L      +    ++L   LF +  L     T+   +T   VL +          + 
Sbjct: 533 QIYELAG-EEFNINSPKQLGVILFEKLDLPHGKKTKTGWSTAVDVLKNLADKHDVVALIL 591

Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             R   ++      + L   ++ D GR+  +      + TGR S      QN+P  S   
Sbjct: 592 QYR-SLAKLKGTYTDALPLLIHPDSGRIHTSFNQAV-TATGRLSSSDPNLQNIPIRSEEG 649

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   +   G+ L+ AD + IE RV+A MA E 
Sbjct: 650 RA-------------------------IREAFVPDAGQVLLAADYSQIELRVMAHMADEP 684

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              ++F  GED++  T +  F+V P  V  + R   K +                    G
Sbjct: 685 ILQESFRQGEDIHQRTASEIFSVFPDMVDSEMRRRAKTIN--------------FGVLYG 730

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +                                   A +        ++    + +++  
Sbjct: 731 MG------------------------------AFSLAKDLGISNKEAKQYIDHYFERYPA 760

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E   +  Q   +                          +L +    GR     D+ + 
Sbjct: 761 VLEFIEQQKQFGRE--------------------------HLYVETLLGRRCAVSDINSK 794

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                       R            VQ  + DI+   M+   +          +VL VHD
Sbjct: 795 N---GQVRSYAERNA------VNYPVQGSAADIIKVAMVRIHQRLQDLQLKTRMVLQVHD 845

Query: 631 EIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+V + P  +  +  +++   M         +PL+        +R
Sbjct: 846 ELVFDVPKDEVDDVVALVVQEMEQAVE--LRVPLEVSLGRGANWR 888


>gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501]
 gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501]
          Length = 931

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 195/701 (27%), Gaps = 160/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S            A+   ++  +F  +          H             + 
Sbjct: 355 AFDTETTSLD----------AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+   T +  +  ++  VL   + +++       T++ +              
Sbjct: 405 SALKPLLEDPAKTKICQHGKYDMNVLM-HYGIEMRGMA-FDTMLESYVLD--------AT 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +     +   K L     + E       +     + A    G Y   D  VT  + + 
Sbjct: 455 ATRHDMDSLAL-KYLGRGTIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQT 513

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L     +           E  L  +   I   G  VD  L    +  +  +  +L++E  
Sbjct: 514 LLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQLEREAF 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L   L+ + G  +   T     +T + VL+   +      +V   
Sbjct: 574 DIAG-EEFNLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLPKVIMQ 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               S+      + L + +N       T      + TGR S      QN+P  +      
Sbjct: 633 HRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRR- 691

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A+ G KL+ AD + IE R++A +A +   L
Sbjct: 692 ------------------------IRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLL 727

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+   D++  T A  F V   QV+ DQR   K +                    G++ 
Sbjct: 728 HAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFG--------------LIYGMSA 773

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +                                     +     +  ++  V  
Sbjct: 774 FGLAKQID------------------------------VGRKEAQEYIDRYFARYPGVLA 803

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                     +                             +    GR L   ++ +    
Sbjct: 804 YMERTRTQAAE--------------------------QGYVETLFGRRLYLPEINSKNGA 837

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633
           +    +   R            +Q  + DI+   M+              ++L VHDE+V
Sbjct: 838 MR---KGAERTAINAP------MQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELV 888

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  +         +  LM+        +PL  E      +
Sbjct: 889 LEVREDLVEQVREAICPLMSGAAQ--LDVPLLVEAGVGNNW 927


>gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 912

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 107/703 (15%), Positives = 201/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +          D  ++  A              H+            + 
Sbjct: 336 AFDLETSSLNYM----------DAEIVGVALAVGAGEAAYVPLAHEGPDTPTQLDRDRVL 385

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
             LK  LE+ D   V  N  ++ +VL      DI +      T++ +      ++     
Sbjct: 386 AALKPLLEDPDRAKVGQNLKYDMSVLARY---DIHLEGVAYDTMLESYVLDSTAS----- 437

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     +   K L     K E       +  P  + A      Y   D  +T  + +
Sbjct: 438 ---RHDMDSLAL-KYLGRATVKYEDVCGKGAKQIPFAQVAVETATRYAGEDADITLRLHQ 493

Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L  +   +   G  VD AL    +  +      L+Q  
Sbjct: 494 TLYPRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVKVDRALLEQQSTELAEGMAALEQRA 553

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
                G   +    ++++  LF   GL           +T + VL        +  ++  
Sbjct: 554 HEEAEGP-FNLSSPKQIQEILFERMGLPVLQKTPKGAPSTAESVLEELAARGYELPRLIL 612

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                ++      + L   ++   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 613 AYRSLAKLKTTYTDKLPRLIHPKTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPVRTAEGR 671

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   +A  G KL+ AD + +E R++A ++G++ 
Sbjct: 672 R-------------------------IRKAFVAEPGCKLLAADYSQVELRIMAHLSGDEG 706

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF  G D++  T A  F +AP +V  +QR   K +                    G+
Sbjct: 707 LRQAFAEGADIHSATAAEVFGLAPERVGGEQRRAAKAINF--------------GLIYGM 752

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A +        +     + +++  V
Sbjct: 753 S------------------------------AYGLARQLGIERGEAQAYVDRYFERYPGV 782

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            E  +       +                             +    GR L   ++    
Sbjct: 783 KEYMDRTRAEARE--------------------------RGYVETLFGRRLYLPEINARN 816

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
                      R            +Q  + D++   M+          +   +V+ VHDE
Sbjct: 817 ---RQRREYAERTAINAP------MQGTAADLIKRAMVAVDAWLTEAHSKARMVMQVHDE 867

Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E P  D    +  L   M +    A  +PL+ +   +  +
Sbjct: 868 LVLEVPAADVPAVAEGLRERMQAAGELA--VPLEVDVGVADDW 908


>gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
 gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99]
          Length = 929

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 114/705 (16%), Positives = 212/705 (30%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L+            +I  +F             HD            + 
Sbjct: 353 AFDLETDSLDTLS----------ANIIGLSFATAPGVAAYLPVAHDYLDAPAQLDRNDVL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LEN     V  N  F+R VLK+  ++++   R   T++ + +         +  
Sbjct: 403 ARLKPLLENPQALKVGQNLKFDRGVLKSY-DIELQGIR-FDTMLESYALNSVIGRHDMDT 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L  +    E       +    ++ A    G Y   D  VT ++
Sbjct: 461 LALR------------WLNHKTVTFEEIAGKGKKQLTFNQIALEQAGHYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   KEQ            L  +   I   G  +D  +  T +Q +     +L+Q
Sbjct: 509 HLKMWPALEKEQGPKNVFEQLEMPLVPVMSRIERNGVLIDQGILATHSQELGSRLAELEQ 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+T LF + G+     T     +T + VL+      P    +
Sbjct: 569 KAHELAG-EPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   S+      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEHR-GLSKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G ++V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPPGYRIVAADYSQIELRIMAHLSQDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF + +D++  T A  F V+  +V+ +QR   K +   L Y            +  
Sbjct: 722 GLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGM-----SSFGLSRQ 776

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L                                              ++    + +++  
Sbjct: 777 L---------------------------------------NIGAGEAKKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +      +   +                             +    GR L   D+  +
Sbjct: 798 VLQYMESTRELAAE--------------------------KGYVSTLDGRRLYLPDINAS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVH 629
            +      +   R            +Q  + DI+   M+               +++ VH
Sbjct: 832 NAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDGWLEQQTSPDVKMIMQVH 882

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E        A + +  LM  +   A  +PL+ +      +
Sbjct: 883 DELVFEVRADAVEAASAQIRALMEGSM--ALDVPLRVDIGVGDNW 925


>gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
 gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060]
          Length = 1024

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 110/715 (15%), Positives = 201/715 (28%), Gaps = 173/715 (24%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
             L +D ET +            A    ++  +              H             
Sbjct: 437  VLAVDTETNALD----------AHRADLVGVSLATAPGRAAYIPLSHRGSEDLFGEGLLP 486

Query: 51   -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                   +   LK  LE+  V  V  N  ++  VL       I +  +  T++++     
Sbjct: 487  NQLPWEAVRARLKPLLEDPAVLKVGQNLKYDWLVLARH---GIEVRPYDDTMLISYVLDA 543

Query: 106  ---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                  +  +             G + I                    R        Y  
Sbjct: 544  GKGSHGMDELARRH--------LGHQPITF----ADVTGTGRTKVTFDRVPLDKATAYAA 591

Query: 163  GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             D  VT  +++ ++P            + E+ L  +   +   G  VD  +   L+    
Sbjct: 592  EDADVTLRLWRLMKPRLAAERRATVYETLERPLVPVLARMESCGIRVDRGMLSRLSGDFS 651

Query: 213  VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268
                +L+ E++ +      S    +++   LF + GL     T +    T   +L     
Sbjct: 652  QSLARLEAEIQEMAG-ESFSVSSPKQIGDILFGKFGLPGAKKTPSGQWATPATLLEELAG 710

Query: 269  LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                  +      + S+      +TL E  + +     T   L A+ TGR S      QN
Sbjct: 711  QGHALPKKILEWRQLSKLKSTYTDTLQEHADRETNRVHTSFALAATTTGRLSSSDPNLQN 770

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            +P  +                              +R   +A EG KL+ AD + IE R+
Sbjct: 771  IPIRTEEGRR-------------------------IRQAFVADEGHKLISADYSQIELRL 805

Query: 389  LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            LA +A      +AF  G D++  T +  F V   Q+T D R   K +             
Sbjct: 806  LAHIADIPQLREAFAAGIDIHAATASAMFGVPLDQMTPDLRRRAKTINF----------- 854

Query: 449  QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   G++                                  A              K
Sbjct: 855  ---GIIYGIS------------------------------AFGLADRLGIPQGEAAAFIK 881

Query: 509  AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
             + ++   +    +++    +   + G                             GR  
Sbjct: 882  QYFERFPGIRAYIDDIK---KTCRDKGYVTTL-----------------------FGRVC 915

Query: 569  VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------ 622
             Y  + +N          + R+           +Q  + DI+   M+    A        
Sbjct: 916  HYPQIRSNNP---QERASVERQAINAP------IQGSAADIIRRAMVRMEGALAAAGLTT 966

Query: 623  DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWA--KGLPLKAEGYESKRYR 674
             ++L VHDE+V E PD +      ++  +M   P  A    +PL  E   +  ++
Sbjct: 967  RMLLQVHDELVFEAPDDEVERALPIIARVMEEAPHPAVQLRVPLAVEAKAATNWQ 1021


>gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
 gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782]
          Length = 643

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 214/700 (30%), Positives = 311/700 (44%), Gaps = 83/700 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + +D ET S  D+ K G+ KYA  ED  ++  ++  +   V L D       P+ LK
Sbjct: 1   MR-IDLDLETYSSNDI-KNGVYKYADAEDFDILFMSYSINFGDVVLVDLT-KEEFPEFLK 57

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAV 112
             + N D T  A N+ FER  L   F              W   +V A+  GLP++L+  
Sbjct: 58  NHILNADATFWAWNTVFERICLSMYFQKKGWSKGYFDPKNWKDIMVHAQELGLPASLERC 117

Query: 113 GEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVT 168
              L L  QK   GK LI  F   CK         RN P H  E W  +GEY   DV   
Sbjct: 118 ASYLGLEEQKDTRGKALIRYFSIPCKPTKANGGRTRNLPEHDPEKWEEYGEYNVQDVVTQ 177

Query: 169 REIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             I ++LE  P+  +E + +  DQ INDRG  +D  L  +     DV+   L  EL+++T
Sbjct: 178 MAIAEKLESVPVHDREWDHYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAIT 237

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                +     +L  WL    G     LT+     V    K    +  +V   +++ + S
Sbjct: 238 GLA--NPNSRAQLLPWLKEH-GYSANGLTK---ADVEQELKTAEGELKRVLELKLQTAMS 291

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH- 345
           ++ K   +  AM SDGR+ G LQF GASRTGRW+G V   QNL R      +  +     
Sbjct: 292 SLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDARGYVKK 351

Query: 346 --LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
             +             +   VR+ ++A +G    V+D + IEARV+AW AGEQW+L  F 
Sbjct: 352 RDIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFS 411

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           T   +Y  + ++ F +   ++ K+ R  GK+ ELALGYQGG  A ++M            
Sbjct: 412 THGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG----------- 460

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                        A+         + +   WR+ + ++ + W +
Sbjct: 461 -----------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKD 491

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVGNN 576
           + +A  + I++   I   K R       +  K  L + LPSGR+L Y        D G+ 
Sbjct: 492 VQRAAIKAIKSRAPIKLGKLR------FRYRKGFLFITLPSGRNLAYARAKVEPGDYGDK 545

Query: 577 RSYLNTTTRQ-LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
             Y     +   T + TYGGKL ENIVQA +RDILAE ++    AG+ +V  VHDE + E
Sbjct: 546 IIYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE 605

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                      +  LM   P WA+GLPL +EGY +K Y K
Sbjct: 606 ---GSGLTIEEVNDLMAQAPDWAEGLPLNSEGYVTKYYMK 642


>gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
 gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7]
          Length = 917

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 108/706 (15%), Positives = 197/706 (27%), Gaps = 166/706 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET S            A+   V+  +F   +         H             +
Sbjct: 338 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPDQLERDAV 387

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
            + LK  LE+     V  ++ ++  VL               T++ +           + 
Sbjct: 388 LRALKPLLEDPQKLKVGQHAKYDINVLANASTPIAMQGVAYDTMLESYVLDSTATRHDMD 447

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           ++             G   I      E       +     + A    G Y   D  VT  
Sbjct: 448 SLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLR 495

Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L                 E  L  +   I   G  VD  L    ++ +  +   L+
Sbjct: 496 LHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALE 555

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQ 275
           ++   L      +    ++L   L+ + GL +   T     +T + VL+   +   +  +
Sbjct: 556 RQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELPK 614

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           V       S+      + L E +N   GR+  +     A+ TGR S      QN+P  + 
Sbjct: 615 VIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRTA 673

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA +G KL+ AD + IE R++A +A 
Sbjct: 674 EGRR-------------------------IRQAFIAPQGYKLLAADYSQIELRIMAHLAK 708

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF    D++  T A  F V    V+ DQR   K +                   
Sbjct: 709 DEGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF--------------GLI 754

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    A  +                                     +     +  ++
Sbjct: 755 YGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFARY 784

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V            +                             +    GR L   ++ 
Sbjct: 785 PGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEIH 818

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
           +    +    +   R            +Q  + DI+   M+              ++L V
Sbjct: 819 SKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLRESGLDARVILQV 869

Query: 629 HDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E  +         +  LM+   S    +PL  E      +
Sbjct: 870 HDELVLEVREDLVEQVREGIRPLMSGAAS--LDVPLVVEAGIGSNW 913


>gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1]
          Length = 913

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 199/707 (28%), Gaps = 168/707 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET S            A+   V+  +F   +         H             +
Sbjct: 334 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP---SAL 109
            + LK  LE+     V  ++ ++  VL      + +    +  T++ +           +
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++             G   I      E       +     + A    G Y   D  VT 
Sbjct: 443 DSLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTL 490

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + + L                 E  L  +   I   G  VD  L    ++ +  +   L
Sbjct: 491 RLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVAL 550

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274
           +++   L      +    ++L   L+ + GL +   T     +T + VL+   +   +  
Sbjct: 551 ERQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELP 609

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           +V       S+      + L E +N   GR+  +     A+ TGR S      QN+P  +
Sbjct: 610 KVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 668

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A +G KL+ AD + IE R++A +A
Sbjct: 669 AEGRR-------------------------IRQAFVAPQGYKLLAADYSQIELRIMAHLA 703

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L AF    D++  T A  F V    V+ DQR   K +                  
Sbjct: 704 KDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF--------------GL 749

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++    A  +                                     +     +  +
Sbjct: 750 IYGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFAR 779

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V            +                             +    GR L   ++
Sbjct: 780 YPGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEI 813

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
            +    +    +   R            +Q  + DI+   M+              ++L 
Sbjct: 814 HSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLLESGLDARVILQ 864

Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E  +         +  LM+   +    +PL  E      +
Sbjct: 865 VHDELVLEVREDLVEQVREGIRPLMSGAAT--LDVPLVVEAGVGSNW 909


>gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 913

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 199/707 (28%), Gaps = 168/707 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET S            A+   V+  +F   +         H             +
Sbjct: 334 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP---SAL 109
            + LK  LE+     V  ++ ++  VL      + +    +  T++ +           +
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++             G   I      E       +     + A    G Y   D  VT 
Sbjct: 443 DSLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTL 490

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + + L                 E  L  +   I   G  VD  L    ++ +  +   L
Sbjct: 491 RLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVAL 550

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274
           +++   L      +    ++L   L+ + GL +   T     +T + VL+   +   +  
Sbjct: 551 ERQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELP 609

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           +V       S+      + L E +N   GR+  +     A+ TGR S      QN+P  +
Sbjct: 610 KVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 668

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A +G KL+ AD + IE R++A +A
Sbjct: 669 AEGRR-------------------------IRQAFVAPQGYKLLAADYSQIELRIMAHLA 703

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L AF    D++  T A  F V    V+ DQR   K +                  
Sbjct: 704 KDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF--------------GL 749

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++    A  +                                     +     +  +
Sbjct: 750 IYGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFAR 779

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V            +                             +    GR L   ++
Sbjct: 780 YPGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEI 813

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
            +    +    +   R            +Q  + DI+   M+              ++L 
Sbjct: 814 HSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVILQ 864

Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E  +         +  LM+   +    +PL  E      +
Sbjct: 865 VHDELVLEVREDLVEQVREGIRPLMSGAAT--LDVPLVVEAGVGSNW 909


>gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
 gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599]
          Length = 977

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 103/706 (14%), Positives = 192/706 (27%), Gaps = 166/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + ID ET S                 ++  +              H+           
Sbjct: 400 DRVAIDTETTSKDP----------HAARLVGISLAVTPWQGCYIPVGHNYAGVPEQLPLD 449

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +  VLK  LE+     V  N  ++  VL     + +       T++ +          +
Sbjct: 450 EVLAVLKPWLESDAQQKVGQNIKYDMHVLANH-GITLR-GVVDDTMLESYVLEAHRTHGM 507

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            A+                L       E       +     + A  +   Y   D  VT 
Sbjct: 508 DALAGRH------------LNRTTITYEEVAGKGAKAIGFDQVALDVATPYAAEDADVTL 555

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L P               E     +   +   G  +D       +Q +  +  +L
Sbjct: 556 QLHRTLWPAIEASERLRHIYRNIEMPTLQVLYDMERHGVLLDRDRLRAQSQQLAEQLQEL 615

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274
           +++   L      +    ++L   LF   GL +   T     +T + VL       P   
Sbjct: 616 ERQAHELAGQP-FNLGSTKQLGEILFERLGLPVVKKTPAGKPSTDESVLEKLALDYPLPK 674

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +       ++      + L E ++       T      + TGR +      QN+P  + 
Sbjct: 675 VLLQ-WRGLAKLKSTYTDKLPEMVDPKTGRVHTTYSQAVAITGRLASSDPNLQNIPVRTP 733

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA  G +++ AD + IE R++A ++ 
Sbjct: 734 EGRR-------------------------IREAFIAPPGHQMMSADYSQIELRIMAHISQ 768

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   LKAF  GED++  T +  F V  A+V  +QR                         
Sbjct: 769 DAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYA--------------KVINFGLI 814

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  A        A +     +  ++
Sbjct: 815 YGMS------------------------------AFGLAANLGIERGAAQAYIDRYFARY 844

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V+           +                             +    GR L   ++G
Sbjct: 845 PGVAAYMERTRAQARE--------------------------QGYVETVFGRRLWLPEIG 878

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
           ++            R            +Q  + D++   M++          G  +V+ V
Sbjct: 879 SSNMGRRQM---AERAAINAP------MQGTAADLIKLAMIDVHAWLRRENLGARLVMQV 929

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E PD +       L   M         +PL AE    + +
Sbjct: 930 HDELVLEVPDAEVERLKTDLPARMAGVAQ--LSVPLLAEVGVGENW 973


>gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131]
 gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131]
          Length = 930

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 216/701 (30%), Gaps = 159/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S             ++  ++  +F  +          HD            + 
Sbjct: 353 AFDTETDSLD----------TQEARLVGMSFAIEPGHAAYLPLGHDYLDAPVQLPLEEVL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +++K  LE+ ++  +  N  ++  VL+   ++++    +  T++ +      + +     
Sbjct: 403 ELMKPILESENILKIGQNLKYDAEVLENY-DIELKGIGY-DTMLESYVLNSVAGMG---- 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + +   L  +    E       +    ++ A      Y   D  VT  + + 
Sbjct: 457 --RHDMDSLADRH-LNHKTVSFEEIAGKGKKQLTFNQIALEEAANYAAEDADVTLLLHQA 513

Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   +  +G  +D  +    ++++     +L++E  
Sbjct: 514 LYPQLEAEPKLNHIFQNIEMPLVPVLVRMERKGVLIDANVLAAQSKVITARLAELEKEAF 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L+T LF +  L +   T +    T + VL            +  +
Sbjct: 574 ELAG-EEFNLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNHALPKLLLEH 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N   +   T      + TGR S      QN+P  +      
Sbjct: 633 R-SLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGRR- 690

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA EG K++ AD + IE R++A ++ ++  L
Sbjct: 691 ------------------------IRQAFIAREGYKVMAADYSQIELRIMAHLSQDKGLL 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F V   QVT DQR   K +                    G++ 
Sbjct: 727 TAFAEGKDIHKATAAEVFGVPLEQVTSDQRRSAKAINF--------------GLIYGMS- 771

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        +R    + +++  V  
Sbjct: 772 -----------------------------AFGLARQLGIPRGEAQRYMDLYFERYPGVLR 802

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                                   +    GR L   D+ ++   
Sbjct: 803 YMENTRLQA--------------------------SEQGYVETLEGRRLYLADIKSSNGM 836

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                +   RE           +Q  + DI+ + M+         K   D+++ VHDE+V
Sbjct: 837 RR---KAAEREAINAP------MQGTAADIIKKAMIAVDNWLQTEKPHADMLMQVHDELV 887

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  +++     + +  LM  +      +PLK +      +
Sbjct: 888 FEVKESELERVQAQVQSLMEQSMK--LDVPLKVDVGIGDNW 926


>gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166]
          Length = 914

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 195/701 (27%), Gaps = 160/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S            A+   ++  +F  +          H             + 
Sbjct: 338 AFDTETTSLD----------AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVL 387

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+   T +  +  ++  VL   + +++       T++ +              
Sbjct: 388 GALKPLLEDPAKTKICQHGKYDMNVLM-HYGIEMRGMA-FDTMLESYVLD--------AT 437

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           A +     +   K L     + E       +     + A    G Y   D  VT  + + 
Sbjct: 438 ATRHDMDSLAL-KYLGRGTIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQT 496

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L     +           E  L  +   I   G  VD  L    +  +  +  +L++E  
Sbjct: 497 LLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQLEREAF 556

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L   L+ + G  +   T     +T + VL+   +      +V   
Sbjct: 557 DIAG-EEFNLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLPKVIMQ 615

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               S+      + L + +N       T      + TGR S      QN+P  +      
Sbjct: 616 HRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRR- 674

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A+ G KL+ AD + IE R++A +A +   L
Sbjct: 675 ------------------------IRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLL 710

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+   D++  T A  F V   QV+ DQR   K +                    G++ 
Sbjct: 711 HAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFG--------------LIYGMSA 756

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +                                     +     +  ++  V  
Sbjct: 757 FGLAKQID------------------------------VGRKEAQEYIDRYFARYPGVLA 786

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                     +                             +    GR L   ++ +    
Sbjct: 787 YMERTRTQAAE--------------------------QGYVETLFGRRLYLPEINSKNGA 820

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633
           +    +   R            +Q  + DI+   M+              ++L VHDE+V
Sbjct: 821 MR---KGAERTAINAP------MQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELV 871

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  +         +  LM+        +PL  E      +
Sbjct: 872 LEVREDLVEQVREAICPLMSGAAQ--LDVPLLVEAGVGNSW 910


>gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1]
 gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I
 gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1]
          Length = 913

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 199/707 (28%), Gaps = 168/707 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET S            A+   V+  +F   +         H             +
Sbjct: 334 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP---SAL 109
            + LK  LE+     V  ++ ++  VL      + +    +  T++ +           +
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++             G   I      E       +     + A    G Y   D  VT 
Sbjct: 443 DSLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTL 490

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + + L                 E  L  +   I   G  VD  L    ++ +  +   L
Sbjct: 491 RLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVAL 550

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274
           +++   L      +    ++L   L+ + GL +   T     +T + VL+   +   +  
Sbjct: 551 ERQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELP 609

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           +V       S+      + L E +N   GR+  +     A+ TGR S      QN+P  +
Sbjct: 610 KVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 668

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A +G KL+ AD + IE R++A +A
Sbjct: 669 AEGRR-------------------------IRQAFVAPQGYKLLAADYSQIELRIMAHLA 703

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L AF    D++  T A  F V    V+ DQR   K +                  
Sbjct: 704 KDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF--------------GL 749

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++    A  +                                     +     +  +
Sbjct: 750 IYGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFAR 779

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V            +                             +    GR L   ++
Sbjct: 780 YPGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEI 813

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
            +    +    +   R            +Q  + DI+   M+              ++L 
Sbjct: 814 HSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVILQ 864

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E  +         +  LM+   +    +PL  E      +
Sbjct: 865 VHDELVLEVREDLVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909


>gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
 gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301]
          Length = 985

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 104/714 (14%), Positives = 205/714 (28%), Gaps = 174/714 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           L  D ET S   +             ++ F+              H              
Sbjct: 398 LAFDTETTSVDPM----------QAELVGFSLALAPGRAAYIPLQHKSGAGDLLGGGTVE 447

Query: 51  -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                      LK  LE+  V  +A N  ++  +++      I    +  T++++     
Sbjct: 448 GQIPLGEALAALKTVLEDASVLKIAQNMKYDWLIMRRY---GINTVSFDDTMLISYVLDA 504

Query: 106 ---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                 +  + E           G   IA     +        +             Y  
Sbjct: 505 GTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSSVTFDMVDIDRATAYAA 552

Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  + 
Sbjct: 553 EDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLA 612

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268
                 + E+  L      +    ++L   LF + GL     T+    +T  +VL     
Sbjct: 613 QAAAAYEDEIYELAG-ERFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLAA 671

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                 +   +  + ++      + L   +N   R   T   + ++ TGR S      QN
Sbjct: 672 EGHPLPRKIVDWRQLTKLKSTYTDALPGFINPATRRVHTCYAMASTSTGRLSSSDPNLQN 731

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +    +                         +R+  IA  G KL+ AD + IE RV
Sbjct: 732 IPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELRV 766

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF  G D++  T +  F V    +  + R   K +             
Sbjct: 767 LAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF----------- 815

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G++    A+ +                                      +  +
Sbjct: 816 ---GIIYGISAFGLANQLSI------------------------------PREEAGQYIR 842

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            + ++   + +          +                          +  +    GR  
Sbjct: 843 TYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRRA 876

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGY 622
            Y D+  +            R            +Q  + DI+   M+         K   
Sbjct: 877 HYPDIRASNP---QIRAFNERAAINAP------IQGSAADIIRRAMIRMEDALAKEKLAA 927

Query: 623 DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E P+ +     S++ H+M +   P+ +  +PL  +   +  +
Sbjct: 928 RMLLQVHDELIFEVPENEVEKTVSVVRHVMENAAMPAVSLAVPLHVDARAAHNW 981


>gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2]
          Length = 913

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 199/707 (28%), Gaps = 168/707 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET S            A+   V+  +F   +         H             +
Sbjct: 334 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP---SAL 109
            + LK  LE+     V  ++ ++  VL      + +    +  T++ +           +
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++             G   I      E       +     + A    G Y   D  VT 
Sbjct: 443 DSLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTL 490

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + + L                 E  L  +   I   G  VD  L    ++ +  +   L
Sbjct: 491 RLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVAL 550

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274
           +++   L      +    ++L   L+ + GL +   T     +T + VL+   +   +  
Sbjct: 551 ERQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELP 609

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           +V       S+      + L E +N   GR+  +     A+ TGR S      QN+P  +
Sbjct: 610 KVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 668

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A +G KL+ AD + IE R++A +A
Sbjct: 669 AEGRR-------------------------IRQAFVAPQGYKLLAADYSQIELRIMAHLA 703

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L AF    D++  T A  F V    V+ DQR   K +                  
Sbjct: 704 KDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF--------------GL 749

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++    A  +                                     +     +  +
Sbjct: 750 IYGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFAR 779

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V            +                             +    GR L   ++
Sbjct: 780 YPGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEI 813

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
            +    +    +   R            +Q  + DI+   M+              ++L 
Sbjct: 814 HSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVILQ 864

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E  +         +  LM+   +    +PL  E      +
Sbjct: 865 VHDELVLEVREELVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909


>gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
 gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58]
          Length = 913

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 200/707 (28%), Gaps = 168/707 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET S            A+   V+  +F   +         H             +
Sbjct: 334 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP---SAL 109
            + LK  LE+     V  ++ ++  VL      + +    +  T++ +           +
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++             G   I      E       +     + A    G Y   D  VT 
Sbjct: 443 DSLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTL 490

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + + L                 E  L  +   I   G  VD  L    ++ +  +   L
Sbjct: 491 RLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVAL 550

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274
           +++   L      +    ++L   L+ + GL +   T     +T + VL+   +   +  
Sbjct: 551 ERQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELP 609

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           +V       S+      + L E +N   GR+  +     A+ TGR S      QN+P  +
Sbjct: 610 KVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 668

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A +G KL+ AD + IE R++A +A
Sbjct: 669 AEGRR-------------------------IRQAFVAPQGYKLLAADYSQIELRIMAHLA 703

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L AF  G D++  T A  F V    V+ DQR   K +                  
Sbjct: 704 KDDGLLDAFRHGLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF--------------GL 749

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++    A  +                                     +     +  +
Sbjct: 750 IYGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFAR 779

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V            +                             +    GR L   ++
Sbjct: 780 YPGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEI 813

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
            +    +    +   R            +Q  + DI+   M+              ++L 
Sbjct: 814 HSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVILQ 864

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E  +         +  LM+   +    +PL  E      +
Sbjct: 865 VHDELVLEVREELVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909


>gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320]
 gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320]
          Length = 932

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 221/702 (31%), Gaps = 162/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++          D  +I  +F  +          HD            + 
Sbjct: 356 AFDTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+  +  +  N  F+R +++    +++    +  T++ +      S+      
Sbjct: 406 TALKPILEDKTILKIGQNLKFDRGIMEN-EGIELNGI-YFDTMLESYVLNSVSS------ 457

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + E K L  +    E            ++        Y   D  +T  + + 
Sbjct: 458 --RHDMDTLAE-KHLNHKTTTFEEIAGKGKGQLTFNQIEVEQATLYAAEDADITLLLHQA 514

Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   +  +G  +D  +    +Q +     ++++E  
Sbjct: 515 LYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKETF 574

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +    ++L+  LF +  L +   T     +T + VL +          +  +
Sbjct: 575 ALAGQ-EFNLSSPKQLQEILFEKLNLPIIKKTPKGAPSTNEEVLEALAHSHELPRLILEH 633

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +NS  +   T      + TGR S      QN+P  +      
Sbjct: 634 R-GLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRR- 691

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA +G K+V AD + IE R++A ++ ++  L
Sbjct: 692 ------------------------IRQAFIARDGFKIVAADYSQIELRIMAHLSQDKGLL 727

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T +  F +   +VT +QR   K +                    G++ 
Sbjct: 728 DAFAQGKDIHRATASEVFGIPLDEVTSEQRRSAKAINFG--------------LIYGMSA 773

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              +  +                                     +R    + +++  V +
Sbjct: 774 FGLSQQI------------------------------GVERKEAQRYMDLYFERYPGVLD 803

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q  + G                             GR L   ++ +  + 
Sbjct: 804 YM---ERTRKQASQQGYVETL-----------------------DGRRLYLPEINSKNAI 837

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEI 632
                +   RE           +Q  + DI+ + M+               +++ VHDE+
Sbjct: 838 RR---KASEREAINAP------MQGTAADIIKKAMIAVDNWICHECPDDVHMIMQVHDEL 888

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E  ++    A +M++ LM S+   A  +PLK E      +
Sbjct: 889 VFEVRESYLEKANAMIHKLMESSMELA--IPLKVEVGVGNNW 928


>gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
 gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11]
          Length = 1001

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 107/716 (14%), Positives = 201/716 (28%), Gaps = 175/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            +  D ET S            A    ++  +              H             
Sbjct: 412 YVAFDTETTSLD----------AMQAELVGISLSCKPGKACYIPLTHKDGEGDLLGGGGL 461

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                      + LK  LE+  +  +A N  ++  V+       + +  +  T++L+ + 
Sbjct: 462 LPDQIPLDDALKALKPMLEDRGILKIAQNLKYDWLVMTRH---GVDVDPYDDTMLLSYTV 518

Query: 104 GLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E           G + I      +             + A      Y
Sbjct: 519 DAGKGGNGMDELSERW--------LGHKPIPF----KEVCGSGKSMITFDKVAIDKATAY 566

Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  ++  L+P  + +            +  +   +  RG  VD  +   L+  
Sbjct: 567 AAEDADVTLRLWLTLKPRLASDHMATVYETLERPMVPVLARMEKRGISVDRQMLSRLSGD 626

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
                  L+ E+  L      +    ++L   LF + GL     T+    +T  +VL   
Sbjct: 627 FAQGAAALESEIYELAG-ETFNVGSPKQLGDILFGKMGLPGGKKTKTGAWSTSAQVLEDL 685

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                          + S+      + L   +N + +   T   L A+ TGR S      
Sbjct: 686 AAEGHPLPSKIVEWRQLSKLKSTYTDALPGYINPETKRVHTSYSLAATTTGRLSSSEPNL 745

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  + +  +                         +R   IA +G+KL+ AD + IE 
Sbjct: 746 QNIPVRTEAGRK-------------------------IRQAFIAEKGQKLISADYSQIEL 780

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA MA      KAFE G D++  T +  F      +    R   K +           
Sbjct: 781 RVLAHMADIPQLKKAFEDGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINF--------- 831

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A +           
Sbjct: 832 -----GIIYGIS------------------------------AFGLANQLGISRGEAGDY 856

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            K + Q+   + +    + +                              +  +    GR
Sbjct: 857 IKTYFQRFPGIKDYMEAVKKQVH--------------------------ADGYVTTIFGR 890

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KA 620
              Y +V      +        R            +Q  + DIL   M+         K 
Sbjct: 891 KAHYPEVNTKNPNMR---AFYERAAINAP------IQGSAADILRRAMVRMEDRLTASKL 941

Query: 621 GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
              ++L VHDE++ E P+        ++  +M +   P+    +PL+ +   +  +
Sbjct: 942 DAQMLLQVHDELIFEVPEDQVEATIPLIKDVMENACDPALKFSVPLQVDARAADNW 997


>gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
 gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016]
          Length = 913

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 198/707 (28%), Gaps = 168/707 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET S            A+   V+  +F   +         H             +
Sbjct: 334 IAFDTETTS----------IDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP---SAL 109
            + LK  LE+     V  ++ ++  VL      + +    +  T++ +           +
Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++             G   I      E       +     + A    G Y   D  VT 
Sbjct: 443 DSLALKY--------LGHSTIRF----EDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTL 490

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + + L                 E  L  +   I   G  VD  L    ++ +  +   L
Sbjct: 491 RLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVAL 550

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274
           +++   L      +    ++L   L+ + GL +   T     +T + VL+   +   +  
Sbjct: 551 ERQAYDLAGQ-EFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELP 609

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           +V       S+      + L E +N   GR+  +     A+ TGR S      QN+P  +
Sbjct: 610 KVIMQYRSMSKLKSTYTDRLPEQINLRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 668

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A +G KL+ AD + IE R++A +A
Sbjct: 669 AEGRR-------------------------IRQAFVAPQGYKLLAADYSQIELRIMAHLA 703

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L AF    D++  T A  F V    V  DQR   K +                  
Sbjct: 704 KDDGLLDAFRHDLDVHRATAAEVFGVPLEDVNGDQRRSAKAINF--------------GL 749

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++    A  +                                     +     +  +
Sbjct: 750 IYGMSAFGLAKQI------------------------------GVERKEAQAYIDRYFAR 779

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V            +                             +    GR L   ++
Sbjct: 780 YPGVLAYMERTRAQAAE--------------------------QGFVETLFGRRLYLPEI 813

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
            +    +    +   R            +Q  + DI+   M+              ++L 
Sbjct: 814 HSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVILQ 864

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E  +         +  LM+   +    +PL  E      +
Sbjct: 865 VHDELVLEVREDLVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909


>gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2]
 gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2]
          Length = 978

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 204/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 VLAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                       LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1]
 gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1]
          Length = 978

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 204/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 VLAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                       LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTISSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688]
 gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688]
          Length = 918

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/705 (16%), Positives = 202/705 (28%), Gaps = 168/705 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP---- 54
           +  D ET S   LT            ++  +F             HD       +P    
Sbjct: 343 VCFDTETTSLDPLT----------AKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAAT 392

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111
              +K  LEN  +  V  N  +++ VL     + +       TL+ +          +  
Sbjct: 393 LARIKPLLENPAIKKVGQNLKYDKHVLANH-GIVLNGIA-HDTLLQSYVLESHRTHGMDD 450

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G + I      E       +     + A     EY   D  VT ++
Sbjct: 451 LAMRH--------LGVQTITY----EQVAGKGAKQVSFSQVALEQASEYAAEDADVTLQL 498

Query: 172 FKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  +  +  TI   G  +D  + +  +  +  +   L+Q
Sbjct: 499 HENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMALEQ 558

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF + G+         T +T + VL       P    +
Sbjct: 559 QAYELAGQP-FNLGSPKQLQEILFGKLGIKPLKKTPSGTPSTDEDVLQELALDYPLPKVL 617

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +     A  TGR S      QN+P  +  
Sbjct: 618 LEYR-GLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVA-VTGRLSSSDPNLQNIPVRTAE 675

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G  +V AD + IE R++A ++ +
Sbjct: 676 GRR-------------------------IREAFVAPAGGHIVSADYSQIELRIMAHLSQD 710

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  GED++  T A  F V    V+ +QR   KV+   L Y   A          
Sbjct: 711 DGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSA-----FGLAQ 765

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +   A           +    ++ +  +E        + F G               
Sbjct: 766 NLGIERQAAQNYIERYFTRYPGVRDYMQNTRERAKAQGYVETFFGR-------------- 811

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
               LW                                      +  P+G          
Sbjct: 812 ---RLW-----------------------------------VPEINSPNGMRRA------ 827

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
                        R            +Q  + D++   M+         K    +++ VH
Sbjct: 828 ----------GAERAAINAP------MQGTAADLIKLAMIAVQGWLESEKLATKLIMQVH 871

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E PD +       L  LM         +PL AE      +
Sbjct: 872 DELVLEVPDNELALVKEKLPQLMQDVAK--LDVPLLAEVGVGSNW 914


>gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU]
 gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF]
 gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS]
          Length = 735

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 244/735 (33%), Positives = 349/735 (47%), Gaps = 67/735 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWD--CVHDPV------- 52
           LF+DFET S  DL K G   YAE     ++L ++ FDD P ++WD  C            
Sbjct: 5   LFLDFETFSEADLKKVGAYAYAEHDSTEILLASYAFDDGPAKVWDATCASGESDIDLDNN 64

Query: 53  -MPQVLKEALENTD---VTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
             P  L   L       V +V HN   F+R +++ C  LDIP      T+V A  + LP 
Sbjct: 65  SAPDDLLRGLRRAKRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAFRHALPG 124

Query: 108 ALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGD 164
           +L  + E L + +   K + GK LI RFCK         R ++  H + W+ F  Y + D
Sbjct: 125 SLDKLCEVLNVDADLAKDKAGKALIKRFCKPTPKNYKIRRYDRNTHPDEWKQFKHYARND 184

Query: 165 VTVTREIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +T  REI+ ++       KE E+  LDQ INDRG+ VD  LA      V   R +L +  
Sbjct: 185 ITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAAVAAARAELQEAA 244

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           ++   G ++ +  L  L+          + +  ++T   +   +  L  +A QV   R+ 
Sbjct: 245 QATYGGGLTGADFLPLLRDLAPAHH---IPNAQKSTLGDL-LDDADLPDEARQVIEMRLG 300

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A+ +A  K   L+  M++DGR RG LQ+ GA RT RW+G  F PQNL R     + L + 
Sbjct: 301 AASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYFKEKPLARG 360

Query: 343 ITHLPTSITSD-PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
           I  L         D +++ +  VR C+I + GKKLVVAD + +E R LAW+AGE   L  
Sbjct: 361 IEALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSALDT 420

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D+Y  T  + F ++P  V   +R IGK  EL LGY GG  AF   +   GL+L  
Sbjct: 421 FRAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVAAFLTFSKNLGLDLEE 480

Query: 462 FA------------HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
            A                      + ++ +      +++     +        C+ +K+ 
Sbjct: 481 MAVTMAGTFPDYHWRAALRAYEFMKLQEVKRKPLPGKKDDRTTVVLSKKAWLTCDCIKRM 540

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARK-----------RRDVPLVYMKKDKNNL 558
           WR+ H R  + W +L +A    I+N  A                R +  L    K  N L
Sbjct: 541 WRESHPRTVQFWYDLEEACLMAIDNPGASYWAGAKVRQDGKRAIRIERTLTRSGKPGNWL 600

Query: 559 ILMLPSGRSLVYRDVG------------------NNRSYLNTTTRQLTREYTYGGKLTEN 600
            + LPSGR L Y  +G                        N  TRQ   ++TYGGKL EN
Sbjct: 601 KIELPSGRILSYPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLAEN 660

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
           + QA+ RDILA  M+    AGY+I+L+VHDE++ ETPDT E+N + L  LM   P+WAKG
Sbjct: 661 VTQALCRDILAWCMLPVDNAGYEIILSVHDELITETPDTAEYNVAELERLMCDLPAWAKG 720

Query: 661 LPLKAEGYESKRYRK 675
            PLKAEG+E  RY+K
Sbjct: 721 FPLKAEGWEGYRYKK 735


>gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015]
 gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015]
          Length = 900

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 100/707 (14%), Positives = 199/707 (28%), Gaps = 170/707 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  + +        HD            + 
Sbjct: 324 SFDTETTSLNYM----------QAEIVGVSFAVEYNKAAYVPLGHDYPGAPEQLDRDAVL 373

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+T    V  +  +++ VL     +++       T++ +           + +
Sbjct: 374 NALKPLLEDTGKAKVGQHLKYDKNVLARY-GIELKGIA-HDTMLASYVLNSVAGRHDMDS 431

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L       E       +    ++        Y   D  +T ++
Sbjct: 432 LAERY------------LDRHTVHYEDIAGKGAKQLTFNQIDLEQAAPYAAEDADITLQL 479

Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P    E             L  +   I   G  VD    +  +Q +     + ++
Sbjct: 480 HRELWPKLQTEPSLERVYQSLEVPLVDVLARIEQNGVKVDADALYAQSQELAEGMRQAEE 539

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKL-TPQAIQ 275
              +       +    ++L+  LF + GL           +T + VL        P    
Sbjct: 540 AAHNEAG-ESFNLGSPKQLQAILFEKQGLPVVRKTPKGQPSTAEDVLEELAAQGHPLPQW 598

Query: 276 VFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +   R   S+      + L + ++   GR+  +     A+ TGR S      QN+P  S 
Sbjct: 599 ILRYR-ALSKLKSTYTDKLPQLIDSKTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPIRSE 656

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   +A  G K++ AD + IE R++A ++G
Sbjct: 657 EGRR-------------------------IREAFVAEPGHKILAADYSQIELRIMAHLSG 691

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AF+ G D++  T +  F V   +V  +QR   K +                   
Sbjct: 692 DETLIRAFKEGRDIHQATASEVFGVPLDEVESEQRRRAKAVN--------------FGLI 737

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  A +        +     + +++
Sbjct: 738 YGMS------------------------------AFGLAKQLGISRGEAQGYVDTYFERY 767

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +      +   +                             +    GR L   ++ 
Sbjct: 768 PGVRDYMERTREQARE--------------------------QGYVETEFGRRLYLPEIQ 801

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
           +             R            +Q  + DI+   M+    A         +V+ V
Sbjct: 802 SRNVPRRQH---AERTAINAP------MQGTAADIIKRAMIAIHDALEKELPDVRMVMQV 852

Query: 629 HDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674
           HDE+V E P+        L    M         + L  E   +  + 
Sbjct: 853 HDELVFEVPEDQAKQTQALVETKMVEAAD--LRVALDVESDIADSWG 897


>gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1]
 gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1]
          Length = 994

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 513 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 680 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 775 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 885 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614]
 gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614]
          Length = 996

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 110/716 (15%), Positives = 200/716 (27%), Gaps = 175/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            +  D ET S            A    ++  +   +          H             
Sbjct: 407 YVSFDTETTSLD----------AMQAELVGVSLSTEPGKACYVPLGHVDGEGDLLGGGGL 456

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                       VLK  LE+  V  +A N  ++  V+       I I  +  T++L+ + 
Sbjct: 457 VEGQIPLKDALDVLKPMLEDRSVLKIAQNLKYDWLVMTRY---GIDITPFDDTMLLSYTV 513

Query: 104 GLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E              L  +    +             + A      Y
Sbjct: 514 DAGKGGNGMDELSER------------WLDHKPIPFKEICGSGKSMITFDKVAIDKATAY 561

Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  ++  L+P            + E+ +  +   +  RG  VD  +   L+  
Sbjct: 562 AAEDADVTLRLWLILKPRLASERMATVYETLERPMVPVLARMEKRGISVDRQMLSRLSGE 621

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
                   + E+  L      +    ++L   LF + GL     T+    +T  +VL   
Sbjct: 622 FAQGMAGKESEIYELAG-ENFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSAQVLEDL 680

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                +      +  + S+      + L   +N +     T   L A+ TGR S      
Sbjct: 681 AAEGHELPSRIVSWRQLSKLKSTYTDALPGYINPETGRVHTSYALAATTTGRLSSSEPNL 740

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +    +                         +R   IA +G KL+ AD + IE 
Sbjct: 741 QNIPVRTEEGRK-------------------------IRKAFIAEKGHKLISADYSQIEL 775

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA MA      KAF+ G D++  T +  F      +    R   K +           
Sbjct: 776 RVLAHMADIPQLKKAFDDGLDIHAMTASEMFGTPIEGMDPMVRRRAKAINF--------- 826

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A +           
Sbjct: 827 -----GIIYGIS------------------------------AFGLANQLGISRGEAGDY 851

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            K + ++   + +    + +                              N  +    GR
Sbjct: 852 IKTYFERFPGIKDYMEAIKKQVH--------------------------ANGYVTTIFGR 885

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KA 620
              Y +V      +        R            +Q  + DIL   M+         K 
Sbjct: 886 KAHYPEVNTKNPNMR---AFYERAAINAP------IQGSAADILRRAMVRMENRLEGSKL 936

Query: 621 GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
              ++L VHDE++ E PD        ++  +M +   P+    +PL+ +   +  +
Sbjct: 937 DAQMLLQVHDELIFEVPDAQVETTIPVIKDVMENACDPALKLSVPLQVDARAANNW 992


>gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
          Length = 994

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 513 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 680 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 775 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 885 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
 gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 994

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 513 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 680 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 775 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 885 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M]
 gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
          Length = 994

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 100/715 (13%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 513 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 680 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 775 ILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 885 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
          Length = 995

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 407 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 456

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 457 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 513

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 514 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 561

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 562 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 621

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 622 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 680

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 681 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 740

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 741 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 775

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 776 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 825

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 826 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 851

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 852 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 885

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 886 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 936

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 937 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 991


>gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4]
 gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4]
          Length = 918

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/705 (16%), Positives = 202/705 (28%), Gaps = 168/705 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP---- 54
           +  D ET S   LT            ++  +F             HD       +P    
Sbjct: 343 VCFDTETTSLDPLT----------AKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAAT 392

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111
              +K  LEN  +  V  N  +++ VL     + +       TL+ +          +  
Sbjct: 393 LARIKPLLENPAIKKVGQNLKYDKHVLANH-GIALNGIA-HDTLLQSYVLESHRTHGMDD 450

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G + I      E       +     + A     EY   D  VT ++
Sbjct: 451 LAMRH--------LGVQTITY----EQVAGKGAKQVSFSQVALEQASEYAAEDADVTLQL 498

Query: 172 FKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  +  +  TI   G  +D  + +  +  +  +   L+Q
Sbjct: 499 HENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMALEQ 558

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF + G+         T +T + VL       P    +
Sbjct: 559 QAYELAGQP-FNLGSPKQLQEILFGKLGIKPLKKTPSGTPSTDEDVLQELALDYPLPKVL 617

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +     A  TGR S      QN+P  +  
Sbjct: 618 LEYR-GLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVA-VTGRLSSSDPNLQNIPVRTAE 675

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G  +V AD + IE R++A ++ +
Sbjct: 676 GRR-------------------------IREAFVAPAGGHIVSADYSQIELRIMAHLSQD 710

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  GED++  T A  F V    V+ +QR   KV+   L Y   A          
Sbjct: 711 DGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSA-----FGLAQ 765

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +   A           +    ++ +  +E        + F G               
Sbjct: 766 NLGIERQAAQNYIERYFTRYPGVRDYMQNTRERAKAQGYVETFFGR-------------- 811

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
               LW                                      +  P+G          
Sbjct: 812 ---RLW-----------------------------------VPEINSPNGMRRA------ 827

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
                        R            +Q  + D++   M+         K    +++ VH
Sbjct: 828 ----------GAERAAINAP------MQGTAADLIKLAMIAVQGWLESEKLATKLIMQVH 871

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E PD +       L  LM         +PL AE      +
Sbjct: 872 DELVLEVPDNELALVKEKLPQLMQDVAK--LDVPLLAEVGVGSNW 914


>gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94]
 gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94]
 gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1]
          Length = 994

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 513 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 680 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 775 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 885 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS]
 gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS]
          Length = 928

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 103/704 (14%), Positives = 206/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N   R   T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTRRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1043

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 109/716 (15%), Positives = 205/716 (28%), Gaps = 176/716 (24%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
            L ID ET S   +             +   +   +          H              
Sbjct: 454  LAIDTETTSLDPML----------ADLAGLSLCAEPGKAFYVPVGHTSGEGQDLFEGKGL 503

Query: 51   -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                    V+ + LK  LE+  +  +  N  ++  VLK      + +     TL+L+   
Sbjct: 504  LPGQLPIGVVLERLKPLLEDPSILKIGQNVKYDWIVLKQH---GVEMRPLDDTLLLSYVL 560

Query: 104  GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                    +  + E           G + I                    R A     EY
Sbjct: 561  DAGLTDHGMDVLSEKH--------LGHKPIPFSA----VAGSGRTFIGFARVAIDKATEY 608

Query: 161  CKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQI 210
               D  VT  +++ L+P    E          + +  +   +  RG  +D  L   L+  
Sbjct: 609  AAEDADVTLRLWRVLKPRLPAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLGRLSSD 668

Query: 211  VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
               +  + + E+  L      +    ++L   LF + GL     T     +T   VL   
Sbjct: 669  FAQDMARYEAEIYELAG-EKFNLGSPKQLGDILFGKLGLPGAKKTATGAWSTAAGVLEDL 727

Query: 267  KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
             +          +  + ++      + L   +N       T   L A+ TGR S      
Sbjct: 728  AEQGVDLAARILDWRQLAKLKSTYTDALPNYINPSSGRVHTSYALAATTTGRLSSSEPNL 787

Query: 327  QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
            QN+P  + +  +                         +R   IA  G+KLV AD + IE 
Sbjct: 788  QNIPVRNEAGRK-------------------------IRRAFIAPPGRKLVSADYSQIEL 822

Query: 387  RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
            R+LA +A  +    AF    D++  T +  F V    +  + R   K +           
Sbjct: 823  RLLAHIADIKSLKNAFAENLDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------- 873

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                     G++    A+ +                                        
Sbjct: 874  -----GIIYGISAFGLANQLAI------------------------------PREEAAAY 898

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             K + ++   +    ++  +   +                          N  +    GR
Sbjct: 899  IKKYFERFPGIRAYMDDTKKKARE--------------------------NGYVETIFGR 932

Query: 567  SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KA 620
               Y  +  +            R            +Q  + DI+   M++        K 
Sbjct: 933  KCHYPRIKASNPSERAL---NERAAINAP------IQGSAADIIRRAMIHMEAALAAEKL 983

Query: 621  GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
               ++L VHDE++ E PD +     +++  +M   P  A    +PL+ +   ++ +
Sbjct: 984  SAQMLLQVHDELIFEVPDDEVEATIAVVRKIMVEAPLPAVHLSVPLQVDAKAAQNW 1039


>gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71]
 gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71]
          Length = 909

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 194/701 (27%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S           Y E   ++  +F  +          H             + 
Sbjct: 334 AFDTETTSLN---------YME-ADIVGLSFAVERGEAAYVPLAHSYPGAPAQLDRDAIL 383

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+     +  N  ++ +VL    ++ +       T++ +              
Sbjct: 384 AALKPLLEDPAKPKLGQNLKYDASVLARY-DIHMQGIA-FDTMLESYVLDSTGT------ 435

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     +   K L       E       +     +      G Y   D  VT  + + 
Sbjct: 436 --RHDMDSLAL-KYLGRSTTHFEDVAGKGAKQITFDQVGIEQAGPYAAEDAEVTLALHET 492

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   +   G  +D       ++ +      L++E  
Sbjct: 493 LWPKLQESAGLASVFSDIELPLVPVLSRMERTGALLDEERLWEQSRELGGRLQALEEEAH 552

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L    V +    ++L   LF +  L +   T     +T + VL       P    +  +
Sbjct: 553 NLAGQ-VFNLGSPKQLGQILFEKLELPVIKKTPKGAPSTAEEVLQELALDYPLPKLLIEH 611

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 612 R-GLSKLKSTYTDKLPGMINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRR- 669

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA+EG ++V AD + IE R++A ++ +   L
Sbjct: 670 ------------------------IRQAFIAAEGYQVVAADYSQIELRIMAHLSKDAGLL 705

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF    D++  T A  F V+   V+ +QR   K +                    G++ 
Sbjct: 706 EAFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINF--------------GLIYGMS- 750

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        +R    + +++  V E
Sbjct: 751 -----------------------------AFGLARQLRLDRGEAQRYIDVYFERYPGVRE 781

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             +       +                             +    GR L   ++      
Sbjct: 782 YMDNTRALAHE--------------------------QGYVETLFGRRLYLPEINVRNKN 815

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633
                    R            +Q  + DI+   M+   +          +++ VHDE+V
Sbjct: 816 RQQA---AERTAINAP------MQGTAADIIKRAMITVDRWIADDSVDAKMIMQVHDELV 866

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  +         L   M++    A  +PL  E      +
Sbjct: 867 LEVAEDQLDPVCDELCKQMSAAAELA--VPLLVEVGRGANW 905


>gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1]
 gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1]
          Length = 978

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445]
 gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445]
          Length = 978

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 ILAFDTETTSLDPM----------QGELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10]
 gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94]
 gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1]
 gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33]
 gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99]
 gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99]
 gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915]
 gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99]
          Length = 978

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
 gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906]
          Length = 949

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 107/702 (15%), Positives = 220/702 (31%), Gaps = 162/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++          D  +I  +F  +          HD            + 
Sbjct: 373 AFDTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEVL 422

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+  +  +  N  F+R +++    +++    +  T++ +      S+      
Sbjct: 423 TALKPILEDKTILKIGQNLKFDRGIMEN-EGIELNGI-YFDTMLESYVLNSVSS------ 474

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + E K L  +    E            ++        Y   D  +T  + + 
Sbjct: 475 --RHDMDTLAE-KHLNHKTTTFEEIAGKGKGQLTFNQIEVEQATLYAAEDADITLLLHQA 531

Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   +  +G  +D  +    +Q +     ++++E  
Sbjct: 532 LYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKETF 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +    ++L+  LF +  L +   T     +T + VL +          +  +
Sbjct: 592 ALAGQ-EFNLSSPKQLQEILFEKLNLPIIKKTPKGAPSTNEEVLEALAHSHELPRLILEH 650

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +NS  +   T      + TGR S      QN+P  +      
Sbjct: 651 R-GLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRR- 708

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  +G K+V AD + IE R++A ++ ++  L
Sbjct: 709 ------------------------IRQAFIVRDGFKIVAADYSQIELRIMAHLSQDKGLL 744

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T +  F +   +VT +QR   K +                    G++ 
Sbjct: 745 DAFAQGKDIHRATASEVFGIPLDEVTAEQRRSAKAINFG--------------LIYGMSA 790

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              +  +                                     +R    + +++  V +
Sbjct: 791 FGLSQQI------------------------------GVERKEAQRYMDLYFERYPGVLD 820

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q  + G                             GR L   ++ +  + 
Sbjct: 821 YM---ERTRKQASQQGYVETL-----------------------DGRRLYLPEINSKNAI 854

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEI 632
                +   RE           +Q  + DI+ + M+               +++ VHDE+
Sbjct: 855 RR---KASEREAINAP------MQGTAADIIKKAMIAVDNWICHECPDDVHMIMQVHDEL 905

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E  ++    A +M++ LM S+   A  +PLK E      +
Sbjct: 906 VFEVRESYLEKANAMIHKLMESSMELA--IPLKVEVGVGNNW 945


>gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513]
          Length = 978

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541]
 gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541]
          Length = 934

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 209/701 (29%), Gaps = 159/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S             ++  ++  +F  +          HD            + 
Sbjct: 357 AFDTETDSLD----------TQEARLVGMSFAIEAGHAAYLPIGHDYLDAPVQLSLDDVI 406

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            V+K  LEN  +  +  N  ++  VL+    +++       T++ +      + +     
Sbjct: 407 AVMKPILENEKIGKIGQNLKYDAEVLENY-GIELKGIA-FDTMLESYVLNSVAGMG---- 460

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + +   L  +    E       +    ++        Y   D  VT  + + 
Sbjct: 461 --RHDMDSLADRH-LNHKTVSFEEIAGKGKKQLTFNQIPLEQAANYAAEDADVTLLLHQA 517

Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   +  +G  +D       ++I+     +L+++  
Sbjct: 518 LFPQLEEEPKLAHVFQNIEMPLVPVLVRMERKGVLIDAPTLAAQSKIITARLAELEKQAF 577

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L+T LF +  L +   T +    T + VL            +  +
Sbjct: 578 ELAG-EEFNLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNHELPKLLLEH 636

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 637 R-SLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGRR- 694

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA +G K++ AD + IE R++A ++ ++  L
Sbjct: 695 ------------------------IRQAFIARKGYKVMAADYSQIELRIMAHLSQDKGLL 730

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F V   QVT DQR   K +                    G++ 
Sbjct: 731 TAFAEGKDIHKATAAEVFGVPLDQVTSDQRRSAKAINF--------------GLIYGMS- 775

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        +R    + +++  V  
Sbjct: 776 -----------------------------AFGLARQLGIPRGEAQRYMDLYFERYPGVLR 806

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                                   +    GR L   D+ ++   
Sbjct: 807 YMENTRLQA--------------------------SEQGYVETLEGRRLYLADIKSSNGM 840

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                +   RE           +Q  + DI+ + M+         K   D+++ VHDE+V
Sbjct: 841 RR---KAAEREAINAP------MQGTAADIIKKAMIAVDHWLQTEKPEADMLMQVHDELV 891

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  +++     + +  LM  +      +PLK E      +
Sbjct: 892 FEVKESELEKVQAKVQELMEQSMK--LDVPLKVEVGVGMNW 930


>gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
 gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198]
          Length = 949

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 110/702 (15%), Positives = 221/702 (31%), Gaps = 162/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++          D  +I  +F  +          H+            + 
Sbjct: 373 AFDTETDSLNNI----------DARLIGMSFAIEPGKAAYIPLRHEYLDAPEQLPVNDVL 422

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ ++  +  N  F+R +++    +++       T++ +      S       
Sbjct: 423 AALKPILEDKNILKIGQNLKFDRGIMEN-EGIELNGIH-FDTMLESYVLNSVSN------ 474

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + E K L  +    E            ++        Y   D  +T  + + 
Sbjct: 475 --RHDMDTLAE-KHLNHKTTTFEEIAGKGKGQLTFNQIEVEQATLYAAEDADITLLLHQA 531

Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   +  +G  +D  +    +Q +     ++++E  
Sbjct: 532 LYPQIEAIEPLKHVYRDIEMPLVPVLSRMERKGVLIDAQVLAVQSQEITQRLAEIEKETF 591

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +    ++L+  LF +  L +   T     +T + VL            +  +
Sbjct: 592 ALAGQ-EFNLSSPKQLQEILFDKLQLPVIKKTPKGAPSTNEEVLEELAHSHELPRLILEH 650

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +NS  +   T      + TGR S      QN+P  +      
Sbjct: 651 R-GLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRR- 708

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA EG K+V AD + IE R++A ++ ++  L
Sbjct: 709 ------------------------IRQAFIAREGFKIVAADYSQIELRIMAHLSQDKGLL 744

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T +  F +   +VT +QR   K +                    G++ 
Sbjct: 745 DAFAQGKDIHRATASEVFGIPLEEVTSEQRRSAKAINF--------------GLIYGMSA 790

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              +  +                                     +R    + +++  V +
Sbjct: 791 FGLSQQI------------------------------GVERREAQRYMDLYFERYPGVLD 820

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q  E G                             GR L   ++ +  + 
Sbjct: 821 YM---ERTRKQASEQGYVETLE-----------------------GRRLYLPEINSKNAI 854

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEI 632
                +   RE           +Q  + DI+ + M+           A   +++ VHDE+
Sbjct: 855 RR---KASEREAINAP------MQGTAADIIKKAMIAVDNWICNECPADVHMIMQVHDEL 905

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E  ++   NA++ ++ LM S+   A  +PLK E      +
Sbjct: 906 VFEVRESYLENANIMIHKLMESSMELA--IPLKVEVGVGNNW 945


>gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
 gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M]
          Length = 978

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 100/715 (13%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 ILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
 gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686]
 gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
 gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330]
 gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365]
 gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40]
          Length = 979

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 391 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 440

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 441 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 497

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 498 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 545

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 546 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 605

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 606 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 664

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 665 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 724

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 725 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 759

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 760 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 809

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 810 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 835

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 836 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 869

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 870 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 920

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 921 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 975


>gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1]
 gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94]
          Length = 978

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457]
 gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9]
 gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28]
 gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90]
          Length = 978

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTDSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A]
 gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
          Length = 994

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 206/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 513 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                 ++   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 680 AEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 775 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 885 THYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840]
 gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840]
          Length = 978

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGRHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032]
 gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032]
          Length = 966

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 103/706 (14%), Positives = 211/706 (29%), Gaps = 167/706 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
            + +D ET S  +LT            ++  +F  +          HD            
Sbjct: 389 VVAVDTETDSLDNLT----------ANLVGISFATEPGLAAYIPVAHDYLDAPDQLPRDR 438

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109
           + ++LK  LE+  +  V  N  F+R +L+    +++       T++ +           +
Sbjct: 439 VLELLKPLLEDESLVKVGQNLKFDRGILQNY-GIELRGI-VFDTMLESYILDSVSGRHDM 496

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++                L       E            ++      G Y   D  VT 
Sbjct: 497 DSLSSR------------WLKHTTITFEQIAGKGKNQLTFNQIDLEQAGRYAAEDADVTL 544

Query: 170 EIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++  ++ P   +              L  +   I   G  +D A+ H  +Q + ++  +L
Sbjct: 545 QLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLAEL 604

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274
           +Q+   +      +    ++L+T LF + G+     T     +T + VL       P   
Sbjct: 605 EQKAHEIAG-EPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPK 663

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +   R   ++      + L + +N       T      + TGR S      QN+P  + 
Sbjct: 664 VILQYR-GLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRND 722

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA E   +V AD + IE R++A ++ 
Sbjct: 723 EGRR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSR 757

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    V+ +QR   K +                   
Sbjct: 758 DKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINF--------------GLI 803

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  + +        ++    + +++
Sbjct: 804 YGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFERY 833

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V E      +  ++                             +    GR L   D+ 
Sbjct: 834 PGVLEYMERTRKQAKE--------------------------QGYVETLDGRRLYLPDIN 867

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
            + +       +               +Q  + DI+   M+         +    +++ V
Sbjct: 868 ASNAARRAGAER---------AAINAPMQGTAADIIKRAMIAVDGWLEKEQPRVKMIMQV 918

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E    D       ++ LM ++      +PL  E      +
Sbjct: 919 HDELVFEVHKDDVEAVSQKIHELMENSMQ--LDVPLLVEVGSGVNW 962


>gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
 gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026]
          Length = 978

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 VQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143]
 gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143]
          Length = 928

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +         ++                             +    GR L   D+ ++
Sbjct: 798 VLQYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 696

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 108 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 157

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 158 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 214

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 215 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 262

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 263 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 322

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 323 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 381

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 382 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 441

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 442 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 476

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 477 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 526

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 527 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 552

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 553 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 586

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 587 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 637

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 638 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 692


>gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308]
 gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19]
 gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870]
 gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292]
 gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68]
 gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
 gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941]
 gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA
           polymerase, family A:5'-3' exonuclease:3'-5'
           exonuclease:Hel [Brucella melitensis biovar Abortus
           2308]
 gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19]
 gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038]
 gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196]
          Length = 978

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 206/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                 ++   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 THYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 927

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 210/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD            + 
Sbjct: 352 AFDTETDSLDNIS----------ANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +LK  LE+  V  V  N  ++R +L    ++++       T++ +        L +V  
Sbjct: 402 ALLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYI------LDSVAG 453

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 454 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 510

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  +Q +     +L+Q   
Sbjct: 511 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 570

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 571 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 629

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 630 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 687

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 688 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 723

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    V+ +QR   K +                    G++ 
Sbjct: 724 TAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINF--------------GLIYGMS- 768

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        ++    + +++  V E
Sbjct: 769 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 799

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++   
Sbjct: 800 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 833

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+         K    +++ VHDE+V
Sbjct: 834 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELV 884

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    +       ++ LM ++ + A  +PL  E    + +
Sbjct: 885 FEVHKDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 923


>gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 923

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 111/705 (15%), Positives = 210/705 (29%), Gaps = 166/705 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + +D ET S   +             ++  +F  +          HD             
Sbjct: 346 IAVDTETTSLDYM----------QAELVGLSFAIEAGKAAYLPLGHDYPGAPSQLPREAT 395

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAV 112
              LK  LEN D+  V  N  ++ +VL     + +       T++ +      ++     
Sbjct: 396 LAKLKPLLENPDIKKVGQNLKYDMSVLANA-GIQLKGVA-FDTMLESYVFNSVASRHDMD 453

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           G ALK    K    +E                +    ++ A      Y   D  +T  + 
Sbjct: 454 GLALKYLGHKNISFEE----------IAGKGAKQLTFNQIALEQAAPYAAEDADITLRLH 503

Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P               E  L  +   I  RG  +D  L    ++ +  +  +L+Q 
Sbjct: 504 QHLWPRLSKEEGLESVFTELELPLIEVLSDIERRGVLIDSMLLGQQSEELARKIDELEQH 563

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L+   F + G  +   T     +T + VL       P    + 
Sbjct: 564 AHEIAG-EPFNLSSTKQLQELFFTKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKIIL 622

Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            +R   ++      + L   +N   GR+  +     A+ TGR S      QN+P  +   
Sbjct: 623 EHR-SLTKLKSTYTDKLPLMINGRTGRVHTSYHQANAA-TGRLSSSDPNLQNIPIRTEEG 680

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   +A EGK+++ AD + IE R++A ++ ++
Sbjct: 681 RR-------------------------IRQAFVAPEGKRILAADYSQIELRIMAHLSQDE 715

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  G+D++  T A  F+VA   VT +QR   K +                    G
Sbjct: 716 GLLRAFAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVN--------------FGLIYG 761

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    A  +                                     +     + +++  
Sbjct: 762 MSAFGLARQLDI------------------------------PRNEAQSYIDTYFKRYPG 791

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +   E                                    +    GR L   ++ + 
Sbjct: 792 VLKYMEETRAMA--------------------------SEQGYVSTLFGRRLYLPEIRDR 825

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVH 629
            +          R            +Q  + DI+ + M+               +++ VH
Sbjct: 826 NAMRRQA---AERAAINAP------MQGTAADIIKKAMIAIQHWIKTETQGEIQMIMQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  LM +  S    +PL AE      +
Sbjct: 877 DELVFEVDADKADALKEKVCELMAAAAS--LDVPLLAEAGLGDNW 919


>gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 273/726 (37%), Positives = 367/726 (50%), Gaps = 63/726 (8%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     MP+ L  AL 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALH 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
           N  V +  HNS+F+RTVL     +DIP+ RW  ++  A ++ LP AL  + E L++  + 
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K ++GK L+A FCK     C   R  +  H   W  F EY + DV   R++ KRL   +
Sbjct: 128 AKAKDGKRLVALFCKPRPAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLPSHN 187

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               EL  W+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   +
Sbjct: 188 YTGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   L  E G+ L D+ + T +R L  +  L     ++ + R +AS ++  K   L+  
Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S   +   I  +          D
Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDD 366

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408
            + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF   +         
Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTW 426

Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435
                                            Y   YA SF +AP  VTK+QR IGKV 
Sbjct: 427 HSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQ 486

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
           ELALGY GG  AF   A+   ++L   A        P   ++A    +W + N       
Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL--PPLLLQEAVEALQWTKANQRPTFGL 544

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 AC+  K+AWR  H  ++  W  L  A    I + +            + M+  +
Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQYSR 599

Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609
             L + LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG++
Sbjct: 660 LAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQ 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens]
          Length = 939

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 104/712 (14%), Positives = 200/712 (28%), Gaps = 168/712 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
                D ET              A+   ++  +F    +        H            
Sbjct: 352 KLFAFDTETT----------GIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRD 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSNG 104
            + + LK  LE+ +   V  ++ F+  +L  C         + +       T++ +    
Sbjct: 402 TVLRALKPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIA-FDTMLESYVLN 460

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
             +         +     + + K L       +       +     + A    G Y   D
Sbjct: 461 STAT--------RHDMDSLAQ-KYLNHTTVSFQDIAGKGAKQLTFDQIALEQAGPYAAED 511

Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
             VT  + + L                 E  L  +   I  +G  VD  L    +  +  
Sbjct: 512 ADVTLRLHQTLFEKLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDADLLGIQSIELGN 571

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKL 269
           +   L++E   +      +    ++L   L+ + GL +   T     +T + VL+   + 
Sbjct: 572 KMVALEREAFEIAG-EEFNLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEEVLAKLAED 630

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQN 328
             +  +V       S+      + L E +N   GR+  +     A  TGR S      QN
Sbjct: 631 DHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-STGRLSSSDPNLQN 689

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +                              +R   +A +G KL+ AD + IE R+
Sbjct: 690 IPVRTAEGRR-------------------------IRQAFVAPKGYKLLAADYSQIELRI 724

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  + AF    D++  T A  F V   +VT DQR   K +             
Sbjct: 725 MAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINF----------- 773

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G+                                 +   +        +    
Sbjct: 774 ---GLIYGMG------------------------------AQKLGKDIGVDTKTAKAYID 800

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            +  ++  V E  +                                 +   +    GR L
Sbjct: 801 TYFARYPGVREYMDRTRAQA--------------------------ADQGFVETIFGRRL 834

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGY 622
              D+ +N+           R            +Q  + DI+ + M+             
Sbjct: 835 YLPDINSNKP---QERAAAERTAINAP------MQGTAADIIKKAMVAVDNWLCASGLDA 885

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E  +         +   M+        +PL  E      +
Sbjct: 886 KVILQVHDELVLEVREDLVDQVREEIRVHMSEAAK--LDVPLLVEVGVGNNW 935


>gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128]
 gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1]
 gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1]
 gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1]
 gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1]
          Length = 928

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39]
 gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI39]
          Length = 928

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605]
 gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86]
 gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
 gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972]
 gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972]
 gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1]
 gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1]
 gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1]
 gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972]
 gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101]
 gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+  LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQNILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
 gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath]
          Length = 906

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 106/705 (15%), Positives = 202/705 (28%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
             D ET S   +             VI  +F  +          HD            + 
Sbjct: 331 AFDTETSSLDYMR----------AEVIGLSFAVEPGAAAYVPLAHDYPGAPPQLDRAMVL 380

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           + L+  LE+     +  +  ++  VL     + +   R   T++ +           + +
Sbjct: 381 ERLRPLLEDPGKAKLGQHLKYDANVLLNH-GIMLRGIR-HDTMLESYVLNSTATRHDMDS 438

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E       +  P  R +      Y   D  VT  +
Sbjct: 439 LAERY------------LDRKTLHYEDVAGKGAKQIPFARVSVEDACRYAAEDADVTLCL 486

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   I   G  VDV      ++ ++    +++ 
Sbjct: 487 HRALWPRLESIPSLRAVYETIEIPLVPVLSRIERAGVLVDVYKLAEQSRELERRMAEVEA 546

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           E  ++      +    ++++T L+ + GL +   T     +T + VL    +       +
Sbjct: 547 EARAVAG-ETFNLGSPKQIQTILYDKLGLPVIKKTPTGQPSTDESVLQDLAETFELPRLI 605

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   S+      + L   +N   GR+  +     A+ TGR S      QN+P  +  
Sbjct: 606 LEYR-SLSKLKSTYTDKLPHQVNPVSGRVHTSYHQAVAA-TGRLSSSDPNLQNIPVRTEE 663

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G KL+ AD + IE R++A ++G+
Sbjct: 664 GRR-------------------------IRQAFVAPPGHKLLAADYSQIELRIMAHLSGD 698

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF    D++  T A  F VA  +VT  QR   K +                    
Sbjct: 699 ANLLAAFAEDADVHRATAAEVFGVALEEVTSSQRRSAKAIN--------------FGLIY 744

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     +  ++ 
Sbjct: 745 GMS------------------------------AFGLAKQLGIQQKLAQGYIDLYFARYP 774

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V    +   ++  +                             +    GR L   D+ +
Sbjct: 775 GVRAYMDRTRESARE--------------------------LGYVETLFGRRLHVPDIQS 808

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629
                        R            +Q  + DI+   M+          A   +++ VH
Sbjct: 809 RNGQRRQY---AERTAINAP------MQGTAADIIKRAMIALDAWIESSGAPLRMIMQVH 859

Query: 630 DEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +       + +   M+     A  +PL  +      +
Sbjct: 860 DELVFEVAEDFVSEATATVREHMSRAAELA--VPLMVDIGTGDNW 902


>gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661]
 gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 110/703 (15%), Positives = 222/703 (31%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L+            ++  +F  +          HD            + 
Sbjct: 352 AFDLETDSLDTLS----------ANIVGISFAIEPGKAAYLPVAHDYLDAPAQLDRNSVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + LK  LE+  +  V  N  ++R VLK   ++++   +   T++ + +     +      
Sbjct: 402 ERLKPLLEDPALLKVGQNLKYDRGVLKNY-DIELQGIK-FDTMLESYALSSVGS------ 453

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     +   + L  +    E       +    ++        Y   D  VT ++  +
Sbjct: 454 --RHDMDTLSS-RWLNHKTVSFEEIAGKGKKQLTFNQIDLEQAAHYAAEDADVTLQLHLK 510

Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   KEQ            L  +   I   G  +D  +    ++ + +   +L+Q+  
Sbjct: 511 MWPELEKEQGPKEVFENIEMPLLTVISRIERNGVLIDQGILAAHSKELTIRLAELEQKAH 570

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L+T LF + G+     T     +T + VL+      P    +  N
Sbjct: 571 ELAG-EPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVILEN 629

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   ++      + L   +N   GR+  +      + TGR S      QN+P  +     
Sbjct: 630 R-GLAKLKSTYTDKLPLMINPITGRVHTSYHQAV-TATGRLSSTDPNLQNIPVRNEEGRR 687

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS+G K+V AD + IE R++A ++ ++  
Sbjct: 688 -------------------------IRQAFIASKGHKIVAADYSQIELRIMAHLSQDKGL 722

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G D++  T A  F +A  +VT +QR   K +                    G++
Sbjct: 723 LSAFAEGMDIHRATAAEVFGMALDKVTGEQRRSAKAIN--------------FGLIYGMS 768

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             + +        ++    + +++  V 
Sbjct: 769 ------------------------------AFGLSRQLNIGAGEAKKYMDLYFERYPGVL 798

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E      Q   +                             +    GR L   D+  + +
Sbjct: 799 EYMESTRQQAAE--------------------------KGYVSTLDGRRLYLPDINASNA 832

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 833 MRR---KAAERAAINAP------MQGTAADIIKKAMIAVDGWLTPQSAPDVKMIMQVHDE 883

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E   ++   A + +  LM ++      +PL+ +      +
Sbjct: 884 LVFEVKTSEVEAATAKIRDLMENSMK--LDVPLQVDVGVGDNW 924


>gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ]
 gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ]
          Length = 908

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 107/702 (15%), Positives = 196/702 (27%), Gaps = 160/702 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET S            A+   ++  +F             H             +
Sbjct: 331 IAFDSETTSLD----------AQQAELVGLSFAVAPLEAAYIPLAHSYMGVPDQLDRDAV 380

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
              L+  LE+     V  ++ ++  VL   + +++    +  T++ +      +      
Sbjct: 381 LAALRPILEDPARAKVGQHAKYDMNVLA-HYGIEVRGVAY-DTMLESYVLDSTAT----- 433

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     +   K L     + E       +     + A    G Y   D  VT  + +
Sbjct: 434 ---RHDMDSLAL-KYLGQGTIRFEDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQ 489

Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L                 E  L  +   I   G  VD  L    +  +  +  +L++E 
Sbjct: 490 CLWQKLEAIPALAKVLKEIEMPLVPVLARIERHGALVDAKLLGEQSLELGEKLQQLEREA 549

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L   L+ + GL +   T     +T + VL+   +      QV  
Sbjct: 550 HELAG-EPFNLASPKQLGAILYDKLGLPVLSKTAKGQPSTAESVLADLAEQGYPLPQVIM 608

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 609 RHRSLNKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTTEGRR 668

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A EG +LV AD + IE R++A +A +   
Sbjct: 669 -------------------------IRQAFVAPEGYRLVAADYSQIELRIMAHLAQDTSL 703

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF    D++  T A  F VAP  V+ DQR   K +                    G++
Sbjct: 704 LHAFRNDLDVHRATAAEVFGVAPEAVSADQRRSAKAINF--------------GLIYGMS 749

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     +  ++  V 
Sbjct: 750 ------------------------------AFGLARQIGVERKEAQAYIDRYFARYPGVL 779

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                      +                             +    GR L   ++ +   
Sbjct: 780 AYMERTRAQAAE--------------------------QGYVETLFGRRLYLPEIHSKNG 813

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632
            L    +   R            +Q  + DI+   M+              ++L VHDE+
Sbjct: 814 ALR---KAAERTAINAP------MQGSAADIIKRAMVTVDAWLLESGLDARMILQVHDEL 864

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E  +         L   M+     A  +PL  E      +
Sbjct: 865 VLEVREDQVEALKAGLLPRMSGAA--ALDVPLLVEAGVGGNW 904


>gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14]
 gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14]
          Length = 923

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 96/708 (13%), Positives = 199/708 (28%), Gaps = 168/708 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET     +T            V+  +F  ++         HD           
Sbjct: 344 KAFAFDTETDGLDYMT----------ANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRD 393

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            + + LK  LE+     +  N  F+ +++     +++       T++ +           
Sbjct: 394 WVLEQLKPLLEDPKQAKIGQNLKFDASIVARY-GIEMQGI-VFDTMLESYVFNSVVGRHD 451

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + ++                L  +    E       +    ++      G Y   D  +T
Sbjct: 452 MDSLALRY------------LEHKNISFEEVAGKGKKQLTFNQIDLEQAGPYAAEDADIT 499

Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             +   L P               E  L  +   +   G  VD  L    +  +     +
Sbjct: 500 LRLHNTLYPKVEADDKLNHVFETIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAARLDE 559

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQA 273
           ++++   +      +    ++L+  LF + GL         T +T + VL       P  
Sbjct: 560 IEKKAFEI-AEQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLP 618

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   R   ++      + L + +N       T      + TGR S      QN+P  +
Sbjct: 619 KLLLEYR-GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRN 677

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A  G K++  D + IE R++A ++
Sbjct: 678 EEGRR-------------------------IRQAFVAQSGYKILAVDYSQIELRIMAHLS 712

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  L AF  G+D++  T A   ++   +V+ +QR   K +                  
Sbjct: 713 GDKALLDAFRHGKDIHAATAAEILSLDIEEVSSEQRRRAKAINF--------------GL 758

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++    A  +                                     +     + ++
Sbjct: 759 IYGMSAFGLAKQLDM------------------------------GRNEAQNYMNVYFER 788

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V E       A                                +    GR L   D+
Sbjct: 789 YPGVLEYMESTRNAA--------------------------SEQGYVETLFGRRLYLPDI 822

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVL 626
            +         +   R            +Q  + DI+   M+          +    +++
Sbjct: 823 KSRNGLRR---KAAERAAINAP------MQGTAADIIKLAMIAVDGWVQQQPEGNVRLLM 873

Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE+V E  ++      + +  LM    +    +PL A+      +
Sbjct: 874 QVHDELVFEVKESALEAVTASVKALMEQAAT--LDVPLIADTGYGDNW 919


>gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536]
 gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11]
 gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536]
 gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11]
 gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1]
 gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2]
 gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
 gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------LGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T]
 gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease
           [Shigella flexneri 2002017]
 gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671]
 gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71]
 gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------LGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5]
 gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 103/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LEN     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLENEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
 gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206]
 gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3]
 gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206]
          Length = 928

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13]
 gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13]
          Length = 994

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 406 VLAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                       LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 456 ENQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 513 AGTGSHGMNPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 560

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 561 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 620

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 621 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 679

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 680 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 739

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 740 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 774

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 775 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 824

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 825 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 850

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 851 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 884

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 885 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 935

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++ H+M +   P+ +  +PL+ +   +  +
Sbjct: 936 ARMLLQVHDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDARAAHNW 990


>gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69]
 gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75]
 gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5'
           exonuclease [Escherichia coli O127:H6 str. E2348/69]
 gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75]
          Length = 928

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 101/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V           ++                             +    GR L   D+ ++
Sbjct: 798 VLGYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263]
          Length = 928

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924


>gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469]
 gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia fergusonii ATCC 35469]
          Length = 928

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K-12 substr.
           W3110]
 gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A]
 gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638]
 gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A]
 gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22]
 gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019]
 gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171]
 gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11]
 gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1]
 gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989]
 gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952]
 gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9]
 gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B]
 gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088]
 gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736]
 gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
 gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I
 gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli]
 gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli]
 gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655]
 gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Escherichia coli str. K-12 substr. MG1655]
 gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046]
 gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and
           3'->5' exonuclease [Escherichia coli str. K12 substr.
           W3110]
 gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A]
 gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739]
 gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B]
 gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94]
 gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638]
 gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A]
 gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22]
 gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019]
 gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171]
 gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1]
 gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11]
 gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli 55989]
 gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli IAI1]
 gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952]
 gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Escherichia coli BL21(DE3)]
 gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606]
 gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)]
 gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1]
 gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088]
 gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1]
 gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1]
 gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1]
 gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1]
 gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7]
 gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1]
 gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1]
 gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7]
 gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1]
 gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112]
 gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010]
 gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68]
 gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1]
 gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482]
 gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489]
 gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007]
 gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3]
 gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736]
 gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718]
 gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271]
 gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280]
 gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591]
 gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Shigella sp. D9]
          Length = 928

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509]
          Length = 928

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272]
          Length = 928

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------TAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70]
 gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218]
          Length = 928

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------LGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
 gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1]
          Length = 935

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 104/712 (14%), Positives = 200/712 (28%), Gaps = 168/712 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
                D ET              A+   ++  +F    +        H            
Sbjct: 348 KLFAFDTETT----------GIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRD 397

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSNG 104
            + + LK  LE+ +   V  ++ F+  +L  C         + +       T++ +    
Sbjct: 398 TVLRALKPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIA-FDTMLESYVLN 456

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
             +         +     + + K L       +       +     + A    G Y   D
Sbjct: 457 STAT--------RHDMDSLAQ-KYLDHTTVSFQDIAGKGAKQLTFDQIALEQAGPYAAED 507

Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
             VT  + + L                 E  L  +   I  +G  VD  L    +  +  
Sbjct: 508 ADVTLRLHQTLFDKLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDAELLGIQSIELGN 567

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKL 269
           +   L++E   +      +    ++L   L+ + GL +   T     +T + VL+   + 
Sbjct: 568 KMIALEREAFEIAG-EEFNLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEEVLAKLAED 626

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQN 328
             +  +V       S+      + L E +N   GR+  +     A  TGR S      QN
Sbjct: 627 DHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-STGRLSSSDPNLQN 685

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +                              +R   +A +G KL+ AD + IE R+
Sbjct: 686 IPVRTAEGRR-------------------------IRQAFVAPKGYKLLAADYSQIELRI 720

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  + AF    D++  T A  F V   +VT DQR   K +             
Sbjct: 721 MAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINF----------- 769

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G+                                 +   +        +    
Sbjct: 770 ---GLIYGMG------------------------------AQKLGKDIGVDTKTAKAYID 796

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            +  ++  V E  +                                 +   +    GR L
Sbjct: 797 TYFARYPGVREYMDRTRAQA--------------------------ADQGFVETIFGRRL 830

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGY 622
              D+ +N+           R            +Q  + DI+ + M+             
Sbjct: 831 YLPDINSNKP---QERAAAERTAINAP------MQGTAADIIKKAMVAVDNWLCASGLDA 881

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E  +         +   M+        +PL  E      +
Sbjct: 882 KVILQVHDELVLEVREDLVDQVREEIRVHMSEAAK--LDVPLLVEVGVGNNW 931


>gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354]
 gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354]
          Length = 928

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044]
 gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 930

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 210/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD            + 
Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +LK  LE+  V  V  N  ++R +L    ++++       T++ +        L +V  
Sbjct: 405 TLLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYI------LDSVAG 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  +Q +     +L+Q   
Sbjct: 514 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 690

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 691 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    V+ +QR   K +                    G++ 
Sbjct: 727 TAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINF--------------GLIYGMS- 771

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        ++    + +++  V E
Sbjct: 772 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 802

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++   
Sbjct: 803 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 836

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+         K    +++ VHDE+V
Sbjct: 837 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELV 887

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    +       ++ LM ++ + A  +PL  E    + +
Sbjct: 888 FEVHKDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926


>gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89]
 gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88]
 gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89]
 gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1]
 gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli S88]
 gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA]
 gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034]
 gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146]
 gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3]
 gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252]
          Length = 928

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924


>gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012]
 gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012]
          Length = 928

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 103/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   KL++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAKLEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
 gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3]
          Length = 930

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 210/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD            + 
Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +LK  LE+  V  V  N  ++R +L    ++++       T++ +        L +V  
Sbjct: 405 TLLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYI------LDSVAG 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  +Q +     +L+Q   
Sbjct: 514 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 690

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 691 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    V+ +QR   K +                    G++ 
Sbjct: 727 TAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINF--------------GLIYGMS- 771

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        ++    + +++  V E
Sbjct: 772 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 802

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++   
Sbjct: 803 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 836

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+         K    +++ VHDE+V
Sbjct: 837 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELV 887

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    +       ++ LM ++ + A  +PL  E    + +
Sbjct: 888 FEVHKDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926


>gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a]
 gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli ED1a]
          Length = 928

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924


>gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82]
 gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C]
          Length = 928

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924


>gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863]
          Length = 928

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D       ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4]
 gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4]
          Length = 793

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 109/716 (15%), Positives = 197/716 (27%), Gaps = 175/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
            +  D ET S            A    ++  +              H             
Sbjct: 204 YVAFDTETTSLN----------AMQAELVGISLSTSTGKACYIPLAHIDGEGDLLGGGAL 253

Query: 50  ------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                       +LK  LE+  V  +A N  ++  V+       + +  +  T++L+ + 
Sbjct: 254 IEGQIPLKDALAILKPMLEDPAVLKIAQNLKYDWLVMTHY---GVNVTSYDDTMLLSYTV 310

Query: 104 GLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E           G + I      +             +        Y
Sbjct: 311 DAGKGGNGMDELSERW--------LGHKPIPF----KEVCGSGKSMITFDKVPLDKATAY 358

Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  +++ L+P            + E+ +  +   +  RG  VD  +   L+  
Sbjct: 359 AAEDADVTLRLWQVLKPRLASDRMATVYETLERPMVPVLARMEQRGIAVDRQMLSRLSGD 418

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
                  L+ E+  L      +    ++L   LF + GL     T+    +T   VL   
Sbjct: 419 FAQGMAGLEAEIHELAG-ESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSASVLEDL 477

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                          + S+      + L   ++ D +   T   L A+ TGR S      
Sbjct: 478 AAEGHTLPSKIVEWRQLSKLKSTYSDALPGYIHPDTKRVHTSYALAATTTGRLSSSEPNL 537

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  + +  +                         +R   +A +G KL+ AD + IE 
Sbjct: 538 QNIPVRTAAGRK-------------------------IRQAFVAEKGMKLISADYSQIEL 572

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA MA      KAFE G D++  T +  F      +    R   K +           
Sbjct: 573 RVLAHMADIPQLKKAFEEGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFG-------- 624

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++    A                                           
Sbjct: 625 ------IIYGISAFGLAAQ------------------------------LGISRGEASDY 648

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            K + ++   + E      +    T                            +    GR
Sbjct: 649 IKTYFERFPGIKEYMEATKKQVHAT--------------------------GYVTTIFGR 682

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KA 620
              Y DV      +        R            +Q  + DIL   M+         K 
Sbjct: 683 KAHYPDVNTKNPNMRNF---YERAAINAP------IQGSAADILRRAMVRMEDRLLSSKL 733

Query: 621 GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
              ++L VHDE++ E P+        ++  +M +   P     +PL+ +   +  +
Sbjct: 734 DAQMLLQVHDELIFEVPEVQVDATIPLIKDVMENACDPVLKLSVPLQVDARAADNW 789


>gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 930

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 210/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD            + 
Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +LK  LE+  V  V  N  ++R +L    ++++       T++ +        L +V  
Sbjct: 405 ALLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYI------LDSVAG 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  +Q +     +L+Q   
Sbjct: 514 MWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 690

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 691 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    V+ +QR   K +                    G++ 
Sbjct: 727 TAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINF--------------GLIYGMS- 771

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        ++    + +++  V E
Sbjct: 772 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 802

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++   
Sbjct: 803 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 836

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+         K    +++ VHDE+V
Sbjct: 837 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELV 887

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    +       ++ LM ++ + A  +PL  E    + +
Sbjct: 888 FEVHKDELNAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926


>gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933]
 gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966]
 gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933]
 gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai]
 gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076]
 gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401]
 gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486]
 gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206]
 gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045]
 gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042]
 gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115]
 gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli]
 gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli]
 gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588]
 gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43]
 gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359]
 gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407]
 gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212]
 gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89]
 gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61]
 gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520]
 gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044]
 gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125]
 gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88]
          Length = 928

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253]
          Length = 928

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D       ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8]
 gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8]
          Length = 908

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 108/706 (15%), Positives = 210/706 (29%), Gaps = 170/706 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S          +Y  D  ++  +F  +          HD            + 
Sbjct: 332 AFDTETTSL---------RYM-DAEIVGVSFAVEPGKAAYVPLGHDYMGAPEQLDRDSVL 381

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110
           + LK  LE+     V  N  +++ VL      DI +      T+V +           + 
Sbjct: 382 EQLKPLLEDPKHKKVGQNLKYDKNVLANH---DIQLEGIAEDTMVESYVLNSVGTRHDMD 438

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           ++                L       E+      +    ++      G Y   D  +T  
Sbjct: 439 SLARTY------------LDEETITYESIAGKGAKQLTFNQIDLESAGPYAAEDADITLR 486

Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L P               +  L  +   +  RG  +  +     +Q +     +L+
Sbjct: 487 LHQTLAPRLKDTGKLESVYREIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAELE 546

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           +E   +      +    ++L+  L+ + GL +   T     +T + VL            
Sbjct: 547 KEAHEVAG-EAFNLGSTKQLQAILYDKLGLRVIKKTPKGAPSTAEPVLQELAHEHELPRL 605

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R   S+      +TL E ++       T      + TGR S      QN+P  ++ 
Sbjct: 606 IVEHR-SLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRTQE 664

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G KL+ AD + IE R++A ++G+
Sbjct: 665 GRR-------------------------IRQAFIAPKGYKLLAADYSQIELRIMAHLSGD 699

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AFE GED++  T A  F V   +VT DQR   K +   L                
Sbjct: 700 RGLLTAFEHGEDIHKATAAEVFGVTVDEVTGDQRRSAKAINFGLI--------------Y 745

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    +  ++ +                                  +     + +++ 
Sbjct: 746 GMSAFGLSRQLEVD------------------------------RKTAQEYIDRYFERYP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +  + + +                              +  +    GR L   ++  
Sbjct: 776 GVLKYMDNIRKQAHD--------------------------DGYVETLYGRRLYLPEINA 809

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTV 628
                    +   R            +Q  + DI+   M+           +   + + V
Sbjct: 810 RN---KQLQQAAERTAINAP------MQGTAADIIKRAMIEVDNWLRSEHASDACMTMQV 860

Query: 629 HDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE++ E  +         L   M++  S    +PL  E      +
Sbjct: 861 HDELIIEVREEAVDKVKDGLVKRMSAAAS--LDVPLLVEAGVGDNW 904


>gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
 gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether]
          Length = 688

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 100 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 149

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 150 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 206

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 207 AGTGSHGMDPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 254

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 255 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 314

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 315 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 373

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 374 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 433

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 434 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 468

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 469 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 518

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 519 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 544

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 545 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 578

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 579 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 629

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 630 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 684


>gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W]
 gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W]
 gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W]
 gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11]
          Length = 928

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 101/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++      G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQITLEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13]
 gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653]
 gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653]
          Length = 978

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/715 (14%), Positives = 205/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 VLAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                       LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGSHGMNPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 AHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++ H+M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2]
 gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2]
          Length = 956

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 99/703 (14%), Positives = 198/703 (28%), Gaps = 161/703 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPV 52
               D ET S   +          +  ++ FA    D         H            +
Sbjct: 379 EFAFDTETTSLNYM----------NAELVGFAVAVSD-KAAYIPFGHNYPGAPDQIDKQL 427

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
           +    K  LE+  +  +  N  ++ +VL     + +       T++ +        L +V
Sbjct: 428 VIDKFKPLLEDDSLKKIGQNLKYDMSVLAEDAGITLRGVA-FDTMLESYV------LDSV 480

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                + S  +   K L  +            +    ++        Y   D  VT  + 
Sbjct: 481 ATRHDMDSLAL---KYLGRKTISFTDIAGKGAKQLTFNQIGLHEASPYAAEDADVTLRLH 537

Query: 173 KRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P               E  L  +   I   G  VD  L    +Q +     +L ++
Sbjct: 538 QTLWPKLEAEDRLPEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRMAELQEK 597

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L   L+ +  + +   T     +T + VL       P    + 
Sbjct: 598 AFDIAGQ-EFNLASPKQLGEILYEKLEIPVIKKTPKGAPSTAEAVLQELAHDYPLPQVIM 656

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           + R   ++      + L E +N       T      + TGR S      QN+P  S    
Sbjct: 657 DYR-GVAKLKNTYTDKLPELINQRTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRSEEGR 715

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +                         +R   +A +GKK+V  D + IE R++A ++G++ 
Sbjct: 716 K-------------------------IRQAFLAPKGKKIVACDYSQIELRIMAHLSGDKG 750

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
              AFE G D++  T A  +     +V+ + R   K +                    G+
Sbjct: 751 LTDAFEQGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINF--------------GLIYGM 796

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A +        +     + +++  V
Sbjct: 797 S------------------------------AFGLAKQLGLPRKEAQEYIDLYFERYPGV 826

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +   +                                    +    GR L   ++ +  
Sbjct: 827 KKYMEDTRALAID--------------------------KGYVETVYGRRLYLPEIHSKN 860

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
                  +   R            +Q  + DI+ + M+              +++ VHDE
Sbjct: 861 ---GQRRQGAERAAINAP------MQGTAADIIKKAMIKVHDWLETTHFDAKMIMQVHDE 911

Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  D    +    +   M S       +PL  +    + +
Sbjct: 912 LVFEVADDQVDDLVKEVKARMESAAE--LKVPLIVDAGAGENW 952


>gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185]
 gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185]
          Length = 928

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIESGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALDEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687]
          Length = 928

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227]
          Length = 928

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D       ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368]
 gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14]
          Length = 928

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 206/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F++    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFSLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
 gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615]
          Length = 928

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QSYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
 gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS]
          Length = 914

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 191/703 (27%), Gaps = 166/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L             ++  +F             HD            + 
Sbjct: 340 AFDTETTSLDYL----------QAQIVGVSFAVQVGEAAYVPLAHDYLGAPQQLSCDNVL 389

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112
            VLK  LEN     +  N  ++  VL     + +       T++ +          + ++
Sbjct: 390 AVLKPLLENPKKRKIGQNLKYDAHVLANH-GIHLQGMA-FDTMLESYVLNSTTKHDMDSL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            +              L       E       +    ++        Y   D  +T ++ 
Sbjct: 448 AQIY------------LQKTTITFEDVAGKGKKQLSFNQIPLEHATPYACEDADITLQLH 495

Query: 173 KRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L                    L  +   +   G  +D  L H  +  +     +L+Q 
Sbjct: 496 QNLWEQLQNRPKLERIFDDLEMPLIPVLIRMERHGVKIDATLLHQQSAELATRLQQLEQA 555

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVF 277
                     +    ++L+T LF +  L           +T   VL       P    + 
Sbjct: 556 AYEEAGT-EFNLNSPKQLQTILFDKLSLPVLKKTPKKDPSTAVEVLEELAIDYPLPQLIL 614

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R   S+      +TL + +N       T      + TGR S      QN+P  S    
Sbjct: 615 IYR-SLSKLKSTYTDTLPQQINPKTGRVHTSYHQAVTTTGRLSSTNPNLQNIPIRSAEGR 673

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA +G  L+ AD + IE R++A ++ ++ 
Sbjct: 674 R-------------------------IRQAFIAPKGYCLLAADYSQIELRIMAHLSEDEK 708

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L A   GED++    A  F++A  +VT +QR   K +                    G+
Sbjct: 709 LLSALTAGEDIHKAVAAEVFDLAMDEVTTEQRRQAKAVN--------------FGLMYGM 754

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                              A +        +    A+  ++  V
Sbjct: 755 ------------------------------QAFGLAKQLGIERHQAQIYMDAYFARYPGV 784

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
               +++    +Q                             +    GR L   ++    
Sbjct: 785 KAYMDDMRVLAKQ--------------------------QGYVETVFGRRLYIPEIKTRH 818

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDE 631
                      R            +Q  + D++   M+              +++ VHDE
Sbjct: 819 IGRRQA---AERTAINAP------MQGTAADLIKRAMLTVDDWIEKSGLDVKMLMQVHDE 869

Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  +T    A + +   MT        +PL  +    K +
Sbjct: 870 LVFEIAETVIEEAKVAIIEAMTQVAE--LKVPLIVDIGIGKNW 910


>gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894]
 gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894]
          Length = 927

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 104/706 (14%), Positives = 212/706 (30%), Gaps = 167/706 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
            + +D ET S  +LT            ++  +F  +          HD            
Sbjct: 350 VVAVDTETDSLDNLT----------ANLVGISFATEPGLAAYIPVAHDYLDAPDQLSRDR 399

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109
           + ++LK  LE+  +  V  N  F+R +L+    +++       T++ +           +
Sbjct: 400 VLELLKPLLEDESLVKVGQNLKFDRGILQNY-GIELRGIA-FDTMLESYILDSVSGRHDM 457

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++                L       E            ++      G Y   D  VT 
Sbjct: 458 DSLSSR------------WLKHTTITFEQIAGKGKNQLTFNQIDLEQAGRYAAEDADVTL 505

Query: 170 EIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++  ++ P   +              L  +   I   G  +D A+ H  +Q + ++ T+L
Sbjct: 506 QLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLTEL 565

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274
           +Q+   +      +    ++L+T LF + G+     T     +T + VL       P   
Sbjct: 566 EQKAHEIAG-EPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPK 624

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +   R   ++      + L + +N       T      + TGR S      QN+P  + 
Sbjct: 625 VILQYR-GLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRND 683

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA E   +V AD + IE R++A ++ 
Sbjct: 684 EGRR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSR 718

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +    V+ +QR   K +                   
Sbjct: 719 DKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINF--------------GLI 764

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  + +        ++    + +++
Sbjct: 765 YGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFERY 794

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V E      +  ++                             +    GR L   D+ 
Sbjct: 795 PGVLEYMERTRKQAKE--------------------------QGYVETLDGRRLYLPDIN 828

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
            + +       +               +Q  + DI+   M+         +    +++ V
Sbjct: 829 ASNAARRAGAER---------AAINAPMQGTAADIIKRAMIAVDGWLQKEQPRVKMIMQV 879

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E    D       ++ LM ++      +PL  E      +
Sbjct: 880 HDELVFEVHKDDVEAVSQKIHELMENSMQ--LDVPLLVEVGSGVNW 923


>gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101]
          Length = 916

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 341 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 391 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 448

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 449 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 496

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 497 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 556

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 557 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 615

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 616 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 674

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 675 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 709

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 710 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 755

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 756 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 785

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 786 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 819

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 820 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 870

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 871 ELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 912


>gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
 gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya]
          Length = 978

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 206/715 (28%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                  +    LK  LE+  +  +A N  ++  V++      I    +  T++++    
Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +                      Y 
Sbjct: 497 AGTGSHGMAPLSERW--------LGHTPIAY----KDVAGSGKSAVTFDMVDIDRATAYA 544

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 545 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDL 604

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+ +L      +    ++L   LF + GL     T+    +T  +VL    
Sbjct: 605 AQAAAAYEDEIYALAG-EKFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLEDLA 663

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                 ++   +  + ++      + L   +N   +   T   + ++ TGR S      Q
Sbjct: 664 AEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQ 723

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KL+ AD + IE R
Sbjct: 724 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLISADYSQIELR 758

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 759 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF---------- 808

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      +  
Sbjct: 809 ----GIIYGISAFGLANQLSI------------------------------PREEAGQYI 834

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +          +                          +  +    GR 
Sbjct: 835 RTYFERFPGIKDYMEATKAFARE--------------------------HGYVETIFGRR 868

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
             Y D+  +            R            +Q  + DI+   M+    A       
Sbjct: 869 THYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENLA 919

Query: 622 YDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +      ++  +M +   P+ +  +PL+ +   +  +
Sbjct: 920 ARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974


>gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227]
 gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227]
          Length = 928

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 923

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 97/708 (13%), Positives = 197/708 (27%), Gaps = 168/708 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET     +T            V+  +F  ++         HD           
Sbjct: 344 KAFAFDTETDGLDYMT----------ANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRD 393

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   LK  LE+ +   +  N  F+ +++     +++       T++ +           
Sbjct: 394 WVLAQLKPLLEDPNQAKIGQNLKFDASIVARY-GIEMQGI-VFDTMLESYVFNSVVGRHD 451

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + ++                L  +    E       +    ++      G Y   D  +T
Sbjct: 452 MDSLALRY------------LEHKNISFEEIAGKGKKQLTFNQIDLAQAGPYAAEDADIT 499

Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             +   L P               E  L  +   +   G  VD  L    +  +     +
Sbjct: 500 LRLHNALYPKVEADEKLKHVFETIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAARLDE 559

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQA 273
           L+++   +      +    ++L+  LF + GL         T +T + VL       P  
Sbjct: 560 LEKKAFEIADQ-EFNLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLP 618

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   R   ++      + L + +N       T      + TGR S      QN+P  +
Sbjct: 619 KLILEYR-GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRN 677

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A  G K++  D + IE R++A ++
Sbjct: 678 EEGRR-------------------------IRQAFVAQSGYKILAVDYSQIELRIMAHLS 712

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  L AF  G+D++  T A    +   QV+ +QR   K +                  
Sbjct: 713 GDKALLDAFRHGKDIHAATAAEILGLDIEQVSSEQRRRAKAINF--------------GL 758

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++    A  +                                     +     + ++
Sbjct: 759 IYGMSAFGLAKQLDM------------------------------GRNEAQDYMNVYFER 788

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V E                                        +    GR L   D+
Sbjct: 789 YPGVLEYMESTRNTA--------------------------SEKGYVETLFGRRLYLPDI 822

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVL 626
            +         +   R            +Q  + DI+   M+               +++
Sbjct: 823 KSRNGLRR---KAAERAAINAP------MQGTAADIIKLAMIAVDNWVQQQPQDEVRLLM 873

Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE+V E  ++   +  + +  LM    +    +PL A+      +
Sbjct: 874 QVHDELVFEVKESALESVTAEVKALMEQAAT--LDVPLIADAGFGDNW 919


>gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565]
 gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565]
          Length = 921

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 112/706 (15%), Positives = 211/706 (29%), Gaps = 170/706 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET S           Y E   ++  +F  +          HD           V+ 
Sbjct: 345 AFDTETTSLD---------YME-ARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLSEAVVL 394

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
             LK  LE+     V  N  ++R VL    ++D+    +  T++ +      ++   + +
Sbjct: 395 GKLKPLLEDPTCLKVGQNLKYDRNVLLNH-DIDLQGIAY-DTMLESYVLNSTASRHDMDS 452

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L       E       +    ++        Y   D  +T  +
Sbjct: 453 LAKRY------------LGVETTSFEDIAGKGVKQLTFNQIELEQAAPYAAEDADITLRL 500

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L                 E  L  +   +   G  +D  L H  +Q +++   +L++
Sbjct: 501 HQTLWGQLEAVPGLAKVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLAELEK 560

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L   LF + GL +   T     +T + VL+   +       +
Sbjct: 561 QAHELAGQ-EFNLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYELPQ-L 618

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                  ++      + L   +    GR+  +     A+ TGR S      QN+P  +  
Sbjct: 619 LMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPVRNEQ 677

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   I S G KLV AD + IE R++A ++G+
Sbjct: 678 GRR-------------------------IRQAFIPSAGYKLVAADYSQIELRIMAHLSGD 712

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F VA   VT D R   K +                    
Sbjct: 713 KGLLTAFAEGKDIHKATAAEVFGVAIDAVTTDMRRSAKAINF--------------GLIY 758

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        ++    + +++ 
Sbjct: 759 GMS------------------------------AFGLAKQLGIGRAEAQKYMDLYFERYP 788

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V E      Q  E                              +    GR L   D+ +
Sbjct: 789 GVLEYMERTRQQAE--------------------------AQGYVETLFGRRLYLPDIKS 822

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-------ATKAGYDIVLTV 628
             + L    +   R            +Q  + DI+   M+N              +++ V
Sbjct: 823 RNAGLR---KAAERAAINAP------MQGTAADIIKRAMINVDSWIRGIEDESIRMLMQV 873

Query: 629 HDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E  +       +++   M++       +PL  E      +
Sbjct: 874 HDELVFEIREEKLEEYIAIIKEKMSAAAE--LDVPLVVEAGTGDNW 917


>gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83]
          Length = 928

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
 gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1]
          Length = 928

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYATEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B]
          Length = 928

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDANVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22]
 gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342]
 gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22]
          Length = 930

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 210/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD            + 
Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +LK  LE+  +  V  N  ++R +L    ++++       T++ +        L +V  
Sbjct: 405 ALLKPLLEDEKLLKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYI------LDSVAG 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  +Q +     +L+Q   
Sbjct: 514 MWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 690

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 691 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    V+ +QR   K +                    G++ 
Sbjct: 727 TAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINF--------------GLIYGMS- 771

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        ++    + +++  V E
Sbjct: 772 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 802

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++   
Sbjct: 803 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 836

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+   +          +++ VHDE+V
Sbjct: 837 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELV 887

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    +       ++ LM ++ + A  +PL  E    + +
Sbjct: 888 FEVHKDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926


>gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
 gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143]
          Length = 920

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 209/707 (29%), Gaps = 169/707 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
               D ET S           Y E   V+  +F  +          HD            
Sbjct: 343 YFAFDTETTSLN---------YME-ARVVGVSFAVEAGSAAYVPFGHDYVGVEQQLSEDW 392

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SAL 109
           +   LK  LE++    V  N  ++R VL     +++   +   T++ +           +
Sbjct: 393 VLAQLKPLLEDSSRAKVGQNLKYDRNVLANH-GIELNGIQ-FDTMLESYVLNSTATRHDM 450

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++              K L     K E       +    ++   +  G Y   D  +T 
Sbjct: 451 DSLAR------------KYLDVGTIKFEDIAGKGAKQLTFNQIQLQQAGPYAAEDADITL 498

Query: 170 EIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L P             + E  L  +   I   G  V   L +  +  +     +L
Sbjct: 499 QLHEVLWPKLAAIDSLMSVFQTIELSLVPVLSRIERNGALVSRDLLNKQSAELGTRLQQL 558

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274
           ++E   L      +    ++L   LF +  L +   T     +T + VL+      P   
Sbjct: 559 EKEAHELAG-EAFNLSSPKQLGHILFDKLELPVIKKTPKGAASTAEEVLAELALDYPLP- 616

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           ++       S+      + L + ++   GR+  +      + TGR S      QN+P  +
Sbjct: 617 RILMEYRGLSKLKSTYTDKLPQMISEVTGRIHTSYHQAV-TATGRLSSSDPNLQNIPIRT 675

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               +                         VR   +A +G K+V AD + IE R++A ++
Sbjct: 676 EEGRK-------------------------VRQAFVARDGYKIVAADYSQIELRIMAHLS 710

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   LKAF  G+D++  T A  F +   QV+ +QR   K +                  
Sbjct: 711 QDNGLLKAFAEGKDIHQATAAEVFGLELEQVSTEQRRRAKAINF--------------GL 756

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++    A  +                                     +     +  +
Sbjct: 757 IYGMSAFGLAKQID------------------------------VGRHEAQEYIDTYFSR 786

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +  +       +                             +    GR L   ++
Sbjct: 787 YPGVRDYMDNTRADAAE--------------------------RGYVETLYGRRLYLPEI 820

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
             +            R            +Q  + DI+ + M++  +          +++ 
Sbjct: 821 NASNGMRRQA---AERTAINAP------MQGTAADIIKKAMVDVDRWLLESDVDGQMIMQ 871

Query: 628 VHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E  +       S +  LM+        +PL  +      +
Sbjct: 872 VHDELVFEVAEPSLDYLVSSVNDLMSGAV--VLDVPLIVDVGIGSNW 916


>gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327]
          Length = 884

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 309 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 358

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 359 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 416

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 417 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 464

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 465 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 524

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 525 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 583

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 584 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 642

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 643 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 677

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 678 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 723

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 724 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 753

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 754 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 787

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 788 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 838

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 839 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 880


>gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234]
 gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234]
          Length = 1040

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 106/721 (14%), Positives = 208/721 (28%), Gaps = 183/721 (25%)

Query: 6    IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---------VELWDCVHDP----- 51
             D ET S   +             +   +    D+                +H       
Sbjct: 446  FDTETTSLDPMR----------ADLCGVSLAIADYSNDPMGGTIRAAYVPLIHKNGVGDL 495

Query: 52   -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
                              LK  LE+  V  VA N  ++  V+K      I +  +  T++
Sbjct: 496  LGGGLVENQVPMREALSRLKNLLEDPSVLKVAQNLKYDYLVMKRH---GIAMQSFDDTML 552

Query: 99   LARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            ++           + ++ E           G   I      +        +         
Sbjct: 553  MSYVVDAGNGMHGMDSLSERW--------LGHTPIPY----KDIAGTGKASVSFDFVDID 600

Query: 156  LFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAH 205
                Y   D  VT  ++  L+P              E+ L  +   + +RG  VD  +  
Sbjct: 601  KATTYAAEDADVTLRLWHVLKPRLAAKGLTRVYERLERPLIAVLAHMEERGITVDRQILS 660

Query: 206  TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQR 261
             L+  +      L+ E+  L      +    ++L   LF + GL     T+    +T   
Sbjct: 661  RLSGELAQGAAALEDEIYRLAG-ETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAS 719

Query: 262  VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
            VL     +  +  +   +  + ++      + L   ++ + +   T   L A+ TGR S 
Sbjct: 720  VLEDLAAVGHELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTGYALAATTTGRLSS 779

Query: 322  CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                 QN+P  +                              +R+  IA+ G KLV AD 
Sbjct: 780  SEPNLQNIPVRTAEGRR-------------------------IRTAFIATPGHKLVSADY 814

Query: 382  AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            + IE RVLA +A      +AF  G D++  T +  F V    +  + R   K +   +  
Sbjct: 815  SQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGII- 873

Query: 442  QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                          G++    A+ +                                  +
Sbjct: 874  -------------YGISAFGLANQLSIE------------------------------RS 890

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                  K + ++   + +          +                          +  + 
Sbjct: 891  EAGDYIKRYFERFPGIRDYMENTKAFARE--------------------------HGYVE 924

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--- 618
               GR   Y D+ ++   +        R            +Q  + DI+   M+      
Sbjct: 925  TIFGRRAHYPDIRSSNPSMR---AFNERASINAP------IQGSAADIIRRAMVKMEPAL 975

Query: 619  ---KAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKG--LPLKAEGYESKR 672
               K    ++L VHDE++ E  + +      ++  +M +    A    +PLK +   ++ 
Sbjct: 976  DEAKLAARMLLQVHDELIFEVEEGEIERTLPVIVSVMENAAMPALDMRVPLKVDARAAQN 1035

Query: 673  Y 673
            +
Sbjct: 1036 W 1036


>gi|332764614|gb|EGJ94846.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5'
           exonuclease [Shigella flexneri 2930-71]
          Length = 884

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 309 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 358

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 359 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 416

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 417 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 464

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 465 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 524

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 525 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 583

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 584 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 642

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 643 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 677

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 678 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 723

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 724 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 753

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 754 VLEYMERTRAQAKE--------------------------LGYVETLDGRRLYLPDIKSS 787

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 788 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 838

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 839 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 880


>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
 gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
           exonuclease [Cupriavidus taiwanensis LMG 19424]
          Length = 939

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/709 (14%), Positives = 191/709 (26%), Gaps = 171/709 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + ID ET S   +             ++  +              H              
Sbjct: 359 VAIDTETTSLDPM----------QAQLVGISLSAAPGEACYIPVAHRGPDVAGLPEHGQL 408

Query: 51  --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106
               + + ++  LE+     +  N  ++  V      + +       T++ +        
Sbjct: 409 SREFVLERMRAWLEDASRPKLGQNLKYDIHVFANH-GIKLRGVA-HDTMLQSYVLASHRN 466

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             + ++ E L            L  +    E             +       EY   D  
Sbjct: 467 HGMDSLAERL------------LSLKTITYEEVCGKGASQIGFDQIDLARATEYAAEDAD 514

Query: 167 VTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           VT  + +R+ P               E  +  + Q +   G  +D       +  +    
Sbjct: 515 VTLRLHRRMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAAQSAELGQRM 574

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTP 271
             L+Q           +    +++   LF +  L +   T     +T + VL    +  P
Sbjct: 575 LALEQSAYEAAGQP-FNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLAEDYP 633

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               + + R   S+      + L + +N       T      + TGR +      QN+P 
Sbjct: 634 LPKLLLDYR-GLSKLKSTYTDKLPKMVNPRTGRVHTSYGQATAVTGRLASTEPNLQNIPV 692

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  G  +V AD + IE R++A 
Sbjct: 693 RTDEGRR-------------------------IREAFIAEPGSVIVSADYSQIELRIMAH 727

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G++  L+AF  GED++  T A  F V    V+ +QR   KV+                
Sbjct: 728 ISGDENLLRAFANGEDIHRATAAEIFGVERDAVSSEQRRYAKVIN--------------F 773

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++                                  A        A       + 
Sbjct: 774 GLIYGMS------------------------------AFGLASNLGIERDAARHYIDRYF 803

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  V+    E  Q   +                             +    GR L   
Sbjct: 804 MRYPGVAHYMEETRQTARE--------------------------QGYVETVFGRRLWLP 837

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625
           D+               R            +Q  + D++   M+               +
Sbjct: 838 DINGGSGPRRQA---AERAAINAP------MQGTAADLIKLSMIAVQDWLERDGLQTRQI 888

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + VHDE+V E P+ +       L  LM +       +PL AE      +
Sbjct: 889 MQVHDELVLEVPEHELELVKARLPELMCTVAE--LRVPLVAEVGSGANW 935


>gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
 gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5]
          Length = 929

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 104/712 (14%), Positives = 197/712 (27%), Gaps = 168/712 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
             +  D ET              A+   ++  +F             H            
Sbjct: 342 KLIAFDTETT----------GIDAQQAQLVGLSFSVKAGEAAYVPLTHSYMGAPAQLDRD 391

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSNG 104
            +   LK  LE+  +  V  ++ F+  +L  C         + +       T++ +    
Sbjct: 392 SVLLALKPLLEDPKLLKVGQHAKFDMNILANCAIGGDQANGITVRGVA-FDTMLESYVLN 450

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
             +         +     + + K L       +       +     +      G Y   D
Sbjct: 451 STAT--------RHDMDSLAQ-KYLDHSTVSFQDIAGKGAKQLTFDQIPLEQAGPYAAED 501

Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
             VT  + + L                 E  L  +   I  +G  VD  L    +  +  
Sbjct: 502 ADVTLRLHQVLFDKLSAIPSLASVLTDIEMPLVPVLARIERQGALVDDKLLGVQSIELGD 561

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKL 269
           +   L++E   +      +    ++L + L+ + GL +   T     +T + VL+   + 
Sbjct: 562 KMVALEREAFEIAG-EEFNLGSPKQLGSILYDKLGLPVLKKTAKGQPSTAEEVLAKLAED 620

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQN 328
                +V       S+      + L E +N   GR+  +     A  TGR S      QN
Sbjct: 621 DYPLPRVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-STGRLSSSDPNLQN 679

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +                              +R   IA  G KL+ AD + IE R+
Sbjct: 680 IPVRTAEGRR-------------------------IRQAFIAPPGYKLLAADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  L AF    D++  T A  F V    VT DQR   K +             
Sbjct: 715 MAHLSRDEGLLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAIN------------ 762

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G+                                 +   +        +    
Sbjct: 763 --FGLIYGMG------------------------------AQKLGKDIGVDTKQAKAYID 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            +  ++  V E  +                                 +   +    GR L
Sbjct: 791 TYFARYPGVREYMDRTRAQA--------------------------ADQGYVETIFGRRL 824

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGY 622
              ++ +N+           R            +Q  + DI+ + M+             
Sbjct: 825 YLPEINSNKP---QERAGAERTAINAP------MQGTAADIIKKAMVAVDNWLASSGLDA 875

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E  +         +   M+   +    +PL  E      +
Sbjct: 876 RVILQVHDELVLEVREDLVDQVREEIRGHMSGAAT--LDVPLLVEVGVGNNW 925


>gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55]
 gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55]
          Length = 930

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 210/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD            + 
Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +LK  LE+  +  V  N  ++R +L    ++++       T++ +        L +V  
Sbjct: 405 ALLKPLLEDEKLLKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYI------LDSVAG 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  +Q +     +L+Q   
Sbjct: 514 MWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVELEQRAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 690

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 691 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    V+ +QR   K +                    G++ 
Sbjct: 727 TAFSEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINF--------------GLIYGMS- 771

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        ++    + +++  V E
Sbjct: 772 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 802

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++   
Sbjct: 803 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 836

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+   +          +++ VHDE+V
Sbjct: 837 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELV 887

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    +       ++ LM ++ + A  +PL  E    + +
Sbjct: 888 FEVHKDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926


>gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187]
 gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187]
          Length = 910

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 193/705 (27%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             V+  +F             HD              
Sbjct: 334 SFDTETNSLDYI----------QAQVVGLSFAVAPGDAAYLPLAHDYLGAPEQLDREQTL 383

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             LK  LE+     V  +  F+R VL+    + +       T++ +           +  
Sbjct: 384 AKLKPLLEDPTRLKVGQHLKFDRNVLRNH-GIHLQGIA-FDTMLESYVLNSTASRHNMDD 441

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +            K L       E       +    ++        Y   D  +T  +
Sbjct: 442 LAK------------KYLNYTTQTFEDVAGKGVKQLTFNQVELEKAAFYAAEDADITLRL 489

Query: 172 FKRLEPL-----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   +   G  +D  L    +Q ++V   +L+ 
Sbjct: 490 HQTLWPQVEKEPALKSLLLEMELPLAEVLSDMERTGALIDPFLLQNQSQQIEVRLAELES 549

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +  G   +    ++L   LF +  L +   T     +T + VL       P    +
Sbjct: 550 QAHEIAGGP-FNLGSPKQLGEVLFEKLQLPVIKKTPKGAPSTAEEVLQELAYDYPLPKLL 608

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   S+      + L   +        T      + TGR S      QN+P  +   
Sbjct: 609 LEHR-SLSKLKSTYTDKLPLMIAPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRTEEG 667

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   +A  G K+V AD + IE R++A ++ + 
Sbjct: 668 RR-------------------------IRQAFVADHGYKIVAADYSQIELRIMAHLSEDD 702

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  G+D++  T A   N+ P  VT +QR   K +                    G
Sbjct: 703 GLLQAFAHGQDIHRATAAEIMNITPEAVTSEQRRNAKAINF--------------GLIYG 748

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        +R    + +++  
Sbjct: 749 MS------------------------------AFGLAKQLGIPRGEAQRYMDRYFERYPG 778

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V        +  EQ                             +    GR L   D+   
Sbjct: 779 VLTYMERTREQAEQA--------------------------GYVETLFGRRLYLPDIKAK 812

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVH 629
              L    +   R            +Q  + DI+   M+               +V+ VH
Sbjct: 813 NMGLR---KAAERAAINAP------MQGTAADIIKRAMIKLADWIKTCDNGTIRMVMQVH 863

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +        ++   M    S    +PL         +
Sbjct: 864 DELVFEVREDKLDAYVPVIRQYMMDAAS--LKVPLDVGIGVGDNW 906


>gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120]
          Length = 810

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 235 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 284

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 285 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 342

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 343 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDSDVTLQL 390

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 391 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 450

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 451 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 509

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 510 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 568

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 569 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 603

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 604 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 649

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 650 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 679

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 680 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 713

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 714 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 764

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 765 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 806


>gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
 gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2]
          Length = 940

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 111/705 (15%), Positives = 203/705 (28%), Gaps = 162/705 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------D 50
           M  +  D ET S  DL             ++  +F  +D+        H           
Sbjct: 362 MDWVAFDTETDSL-DLFA---------GRIVGVSFSIEDNRAAYVPLAHNYPGAPAQLDR 411

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
             +   LK  LE+   T V  N+ F+  +L     + +       T++ +      +   
Sbjct: 412 DTVLADLKPWLEDASRTKVMQNAKFDSHMLANH-GITLR-GVLFDTMLESYVLDSTAT-- 467

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
                 +     +   K L       E       +            G Y   D  VT +
Sbjct: 468 ------RHDMDSLAA-KYLGRSTITFEDIAGKGAKALSFPEIHLEQAGPYAAEDADVTGQ 520

Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L P             + EQ L  +   +   G  VD        + +      ++
Sbjct: 521 LQQCLWPKLSVEPDLRSVYETIEQPLIEVLVAMERAGVRVDRGELAIQGKAIGERIAAVE 580

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           Q           +    ++LK  LF E  L +   T     +T +  L       P    
Sbjct: 581 QAAFKEAG-REFNLGSTKQLKELLFDELKLPVGKKTPKGEPSTDEEALGELVGSHPLPAL 639

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           + + R   S+     ++ L E +++  GR+         + TGR S      QN+P  S 
Sbjct: 640 ILDYR-GLSKLKSTYIDRLPEDIHTHTGRVHSAFHQAV-TATGRLSSSNPNLQNIPIRSE 697

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   +A  G KL+ AD + IE R++A ++ 
Sbjct: 698 EGRR-------------------------IRQAFVADPGCKLISADYSQIELRIMAHLSE 732

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++    AF  GED++  T A  F V   +V+ +QR   K +                   
Sbjct: 733 DERLCAAFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINF--------------GLI 778

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    A  +                                     +     +  ++
Sbjct: 779 YGMSAFGLAKQLD------------------------------VPRGEAQAYIDLYFARY 808

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V++    + Q   Q                             +    GR L   ++ 
Sbjct: 809 PGVAKYMERMRQQARQ--------------------------MGYVETVFGRRLYLPEIH 842

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
           +             R            +Q  + DI+   M+   K         ++L VH
Sbjct: 843 SRNGQRRQY---AERTAINAP------MQGTAADIIKIAMIALHKLLVVPGRARMILQVH 893

Query: 630 DEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           DE++ E P++D      +    MT        +PL+      + +
Sbjct: 894 DELIFEVPESDVAEIEPIIRAQMTGAAK--LNVPLEVGIGIGRSW 936


>gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
 gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1]
          Length = 919

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 99/702 (14%), Positives = 206/702 (29%), Gaps = 162/702 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------M 53
           +  D ET S   +             ++  +   +          HD            +
Sbjct: 344 VAFDTETTSLNYM----------QAELVGVSVAIEAGKAAYIPVAHDYEDAPEQLDRDWV 393

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + LK  LE+     V  +  ++  VL    ++ +   +   T++ +             
Sbjct: 394 LEQLKPWLEDEGKAKVGQHLKYDANVLNNY-DITLRGIK-FDTMLESYVFNSTGT----- 446

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     +   K L     K E       + K  ++        Y   D  +T  + +
Sbjct: 447 ---RHDMDSLSS-KFLGHSTVKFEDIAGKGAKQKTFNQIDLEQAAFYAAEDADITLRLHQ 502

Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            + P               E  L  +   +   G  +D    H  +  +     +++ + 
Sbjct: 503 AILPKLEKTPELVSVFSDIELPLVPVLAKMEQTGALIDPDRLHAQSAEIASRLQEVEIKA 562

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
                    +    ++L+  LF + GL +   T     +T + +L    +       +  
Sbjct: 563 HEEAGQ-EFNLSSPKQLQEILFEKQGLPVIKKTPKGQPSTAEPILQELAENYELPRLIME 621

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   ++      + L E +   GR+  +      + TGR S      QN+P  ++    
Sbjct: 622 HR-SLAKLKSTYTDKLPEMIQHTGRIHTSYHQAV-TATGRLSSTDPNLQNIPIRTQEGRR 679

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A EG KLV AD + IE R++A ++ ++  
Sbjct: 680 -------------------------IRQAFVAPEGHKLVAADYSQIELRIMAHLSQDKGL 714

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF   ED++  T A  F VA   VT +QR   K +                    G++
Sbjct: 715 LDAFAHDEDVHKATAAEVFEVAVDDVTAEQRRRAKAIN--------------FGLIYGMS 760

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        ++  + + +++  V 
Sbjct: 761 ------------------------------AFGLAKQLGISRPEAQKYVQRYFERYPGVR 790

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +  ++                             +    GR L   ++    +
Sbjct: 791 TYMETTRENAKE--------------------------KGYVETIFGRRLYLPEIKARNA 824

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632
            +        R            +Q  + DI+   M+           G  +++ VHDE+
Sbjct: 825 MMRQA---AERTAINAP------MQGSAADIIKRAMIKMHNWLADTDLGVKMIMQVHDEL 875

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + E  + D   A + +  +M ++      +PL  E      +
Sbjct: 876 IFEVAEKDLEAAQAKIIDIMQNSTE--IDVPLLVEAGVGDNW 915


>gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905]
          Length = 884

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 309 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 358

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 359 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 416

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 417 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 464

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 465 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 524

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 525 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 583

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 584 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 642

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 643 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 677

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 678 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 723

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 724 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 753

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 754 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 787

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 788 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 838

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 839 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 880


>gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299]
 gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299]
          Length = 928

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 101/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF +  +     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQSIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 275/726 (37%), Positives = 367/726 (50%), Gaps = 63/726 (8%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L+ D ET SP+ +   G+  YAE   ++LFA+   D PV++WDC     MP+ L  AL 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
           N  V +  HNS+F+RTVL     ++IP+ RW  ++  A ++ LP AL  + E L++  + 
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K ++GK L+A FCK     C   R  +  H   W  F +Y + DV   R++ KRL   +
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHN 187

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               EL  W+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   +
Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   L  E G+ L D+ + T +R L  +  L     ++ + R +AS ++  K   L+  
Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +          D
Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDD 366

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408
            + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF   +         
Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTW 426

Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435
                                            Y   YA SF +AP  VTK QR IGKV 
Sbjct: 427 HSGEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQ 486

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
           ELALGY GG  AF   A+   ++L   A        P   ++A     W + NH      
Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAAQAAL--PPLLLQEATELLEWTKANHRPTFGL 544

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+E
Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167]
          Length = 928

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIELGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
 gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12]
          Length = 932

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 99/718 (13%), Positives = 197/718 (27%), Gaps = 180/718 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    ++             ++  +   D          H             
Sbjct: 344 VVAVDTETTGLNEMR----------ADLVGVSLCVDPGRAAYLPLAHKDGGGADDLFGGE 393

Query: 51  ----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
                          +LK  LE+  V  +  N  ++  +L       I +     T++L+
Sbjct: 394 AKLAEGQLDFETALGMLKPVLEDPAVLKIGQNMKYDAKILARN---GITVAPIDDTMLLS 450

Query: 101 RSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
            +         + A+ E            K L+                           
Sbjct: 451 YALHAGLHGHGMDALSERY--LDHTPIPIKTLL----------GTGKSAITFDFVPIEEA 498

Query: 158 GEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTL 207
            +Y   D  +T  +++RL+P              E+ +  +   +  RG  VD      +
Sbjct: 499 TKYAAEDAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKVDRDTLSRM 558

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263
           +     +   L+ E+  L      +     +L   LF + G       ++    T   VL
Sbjct: 559 SNAFAQKMAGLEAEIHELAG-ESFNVGSPAQLGEILFEKMGFEGGKTGKSGKYSTPADVL 617

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGC 322
                      +V + R   S+      + L + +N + GR+  +    GA+ TGR +  
Sbjct: 618 EDLATEHDLPRRVLDWRQ-LSKLKSTYTDALQDHINPETGRVHTSYSIAGAN-TGRLAST 675

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P  S                              +R   +A  G  LV  D +
Sbjct: 676 DPNLQNIPVRSEEGRR-------------------------IREAFVAEPGHVLVSLDYS 710

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA +AG      AF  G D++  T +  F+V   ++T + R   K +       
Sbjct: 711 QIELRILAHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINF----- 765

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G++                                  A         
Sbjct: 766 ---------GVIYGIS------------------------------GFGLARNLRIPRAE 786

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +     + ++   +    ++     ++                             +  
Sbjct: 787 AQAFIDTYFERFPGIRAYMDDTVAFAKEHK--------------------------YVQT 820

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----AT 618
             GR +   ++G              R            +Q  + DI+   M+       
Sbjct: 821 LFGRKIHTPEIGAK----GPQAGFAKRAAINAP------IQGTAADIIRRAMVRMPAAIA 870

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMT--SNPSWAKGLPLKAEGYESKRY 673
                ++L VHDE++ E  +         +  +M   + P     +PL  +  + + +
Sbjct: 871 DLPARMLLQVHDELIFEVEEDAVDRVIPAVRQVMEGAAAPVVHLDVPLTVDAGQGRSW 928


>gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113]
 gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113]
          Length = 901

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 110/704 (15%), Positives = 203/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S           Y E   ++  +F    H        H+            + 
Sbjct: 326 AFDLETNSLD---------YME-AEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVL 375

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             LK  LE+     V  N  F+R VL     +++       +++ +           + +
Sbjct: 376 ARLKPLLEDPRHGKVGQNLKFDRNVLANY-GIELQGIH-HDSMLESYVLDSTATRHNMDS 433

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +              K L       E       +  P ++        Y   D  ++ ++
Sbjct: 434 LAL------------KYLQRTTITYEMVAGKGSKQLPFNQVTIEKAAPYAAEDADISLQL 481

Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   P   +E+            L  +   +   G  VD     T +  +     KL+Q
Sbjct: 482 HRYFWPRIQQEESLRRLYQELEIPLIPVLSRMERNGVQVDTTQLKTQSDELAARLKKLEQ 541

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           E   L      +    ++++  L+ +  L +   T     +T + VL       P   ++
Sbjct: 542 EAFDLAG-ESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPLPQRL 600

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   S+      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 601 LQYR-TLSKLKSTYTDRLPLQVNPHTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTAEG 659

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G +LV AD + IE R++A ++ ++
Sbjct: 660 RR-------------------------IRQTFIAPPGYRLVAADYSQIELRIMAHLSEDE 694

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AFE  ED++  T    F     +VT +QR   K +                    G
Sbjct: 695 GLLAAFEAEEDIHQRTATEVFRTPLEEVTPEQRRSAKAINF--------------GLIYG 740

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                    +     TA +   + + Q++  
Sbjct: 741 MS------------------------------AHGLGRQLGINRTAAQHYIERYFQRYPG 770

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V    + + Q   Q                             +    GR L   D+ + 
Sbjct: 771 VKAYMDNICQQARQ--------------------------KGYVETLFGRRLYLPDIHSR 804

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA--GYDIVLTVHD 630
           ++       Q  R            +Q  + DI+   M++      K      +++ VHD
Sbjct: 805 QT---QRRNQAERTAINAP------MQGSAADIIKRAMIHTDGWLQKNSDNARMIMQVHD 855

Query: 631 EIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E  +         +   MT+       +PL  E      +
Sbjct: 856 ELVFEVAEDKLEITMRAIRENMTAAAQ--LKIPLIVEIGSGANW 897


>gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026]
 gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
 gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Escherichia coli UMN026]
 gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412]
 gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302]
 gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1]
          Length = 928

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LEN     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLENEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   I  E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIGPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus influenzae 10810]
          Length = 935

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 102/705 (14%), Positives = 213/705 (30%), Gaps = 165/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 359 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN ++  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 409 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 466

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 467 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 514

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 515 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 574

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 575 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 632

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 633 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 692

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 693 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 727

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +                   
Sbjct: 728 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------GLI 773

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  + +        ++    + Q++
Sbjct: 774 YGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQRY 803

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +   ++ +  +                              +    GR L   D+ 
Sbjct: 804 PSVQQFMTDIREKAKT--------------------------QGYVETLFGRRLYLPDIN 837

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
           ++ +      +   R            +Q  + DI+   M+   +        ++++ VH
Sbjct: 838 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIHHDPNIEMIMQVH 888

Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E   +   F    +   M S       +PL  E    + +
Sbjct: 889 DELVFEVRSEKVAFFREQIKQHMESAAELV--VPLIVEVGVGQNW 931


>gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48]
 gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Pseudomonas entomophila L48]
          Length = 922

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 193/701 (27%), Gaps = 158/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET              A+   ++  +F  + +        HD            + 
Sbjct: 344 AFDTETTGLD----------AQQASIVGLSFAVEPNEAAYVPLAHDYEGAPAQLDREAVL 393

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+     +  N+ ++  +L       +       T++ +      +       
Sbjct: 394 LALKPLLEDPAKGKIGQNAKYDINILANGSPAILMRGVAYDTMLESYVLDSTAT------ 447

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + + K L       E       +    ++      G Y   D  VT  +   
Sbjct: 448 --RHDMDSLAQ-KYLDHTTIGFEDIAGKGAKQLTFNQIPLEKAGPYAAEDADVTLRLHHA 504

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
           L+   +    +  +   I              G  VD AL    +  +  +  +L++E  
Sbjct: 505 LQARLANTPSVLPVLMDIEMPLVPVLAKIERQGALVDAALLGVQSGELGAKLVELEREAY 564

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +    ++L   L+ + G+ +   T     +T + VL    +      +V   
Sbjct: 565 ALAG-EEFNLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDDLAEQGYPLPKVLMQ 623

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               S+      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 624 YRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPVRTAEGRR- 682

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +AS G KL+ AD + IE R++A +A ++  L
Sbjct: 683 ------------------------IRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLL 718

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF    D++  T A  F VA A VT DQR   K +                    G++ 
Sbjct: 719 HAFRNDLDVHRATAAEVFGVALADVTTDQRRSAKAIN--------------FGLIYGMSA 764

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +                                     +     +  ++  V  
Sbjct: 765 FGLAKQI------------------------------GVDRKQSQDYIDRYFARYPGVLA 794

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                     +                             +    GR L   D+      
Sbjct: 795 YMERTRAQAAE--------------------------QGFVETLFGRRLYLPDINAKNPA 828

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
           L    +   R            +Q  + DI+   M+         K    ++L VHDE+V
Sbjct: 829 LR---KGAERTAINAP------MQGTAADIIKRAMVAVDNWLTDSKLDARVILQVHDELV 879

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  +         +   M+        +PL  E      +
Sbjct: 880 LEVREDLVEQVKDEIRGYMSGAAE--LDVPLLVEVGVGSNW 918


>gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20]
 gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 957

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 108/731 (14%), Positives = 217/731 (29%), Gaps = 192/731 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET +   ++            ++  +FG  +         H   +        
Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LEN DV  +  N  ++ T+        
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 462

Query: 88  IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           + +      T++ + +        +  + +           G + I      E       
Sbjct: 463 VQVAGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTIN 193
                 + A  +  +Y   D  VT ++ + L P               E  L  +   I 
Sbjct: 511 NQLTFDKIAIDVASKYAAEDADVTMKLHQVLVPELDKTPTLVKLFNEIEMPLVEVLSRIE 570

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D       +  ++    +L+Q + S     V +    ++L+  LF + GL +  
Sbjct: 571 RNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308
            T     +T + VL           ++       S+      + L   +N   GR+  + 
Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY 689

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P  +                              +R   
Sbjct: 690 HQAV-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAF 723

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA +G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +Q
Sbjct: 724 IARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHCATAAEIFGLALDQVTSEQ 783

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +   L                G++    ++                        
Sbjct: 784 RRSAKAINFGLI--------------YGMSEFGLSNQ----------------------- 806

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          ++  + + Q++  V +   ++ ++                     
Sbjct: 807 -------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA-------------------- 839

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                      +    GR L   ++ ++ +      +   R            +Q  + D
Sbjct: 840 ------SEKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAAD 884

Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662
           I+   M++  KA        +++ VHDE+V E  +      + ++   M         +P
Sbjct: 885 IIKVAMIDIDKAIRGDDNIKMIMQVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVP 942

Query: 663 LKAEGYESKRY 673
           L AE      +
Sbjct: 943 LIAEVGVGDNW 953


>gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 957

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 107/730 (14%), Positives = 214/730 (29%), Gaps = 190/730 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET +   ++            ++  +FG  +         H   +        
Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGISFGLANGDACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LEN DV  +  N  ++ T+        
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 462

Query: 88  IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           + +      T++ + +        +  + +           G + I      E       
Sbjct: 463 VQVAGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193
                 + A  +  +Y   D  VT ++ + L P               E  L  +   I 
Sbjct: 511 NQLTFDKIAIDIASQYAAEDADVTMKLHQVLSPELEKAPTLVKLFNEIEMPLVEVLSRIE 570

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D       +  ++    +L+Q + S     V +    ++L+  LF + GL +  
Sbjct: 571 RNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            T     +T + VL           ++       S+      + L   +N       T  
Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY 689

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               + TGR S      QN+P  +                              +R   I
Sbjct: 690 HQAVTATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFI 724

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A++G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR
Sbjct: 725 ANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQR 784

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   L                G++    ++                         
Sbjct: 785 RSAKAINFGLI--------------YGMSEFGLSNQ------------------------ 806

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                         ++  + + Q++  V +   ++ ++                      
Sbjct: 807 ------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA--------------------- 839

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                     +    GR L   ++ ++ +      +   R            +Q  + DI
Sbjct: 840 -----SKKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAADI 885

Query: 610 LAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPL 663
           +   M+   KA        +++ VHDE+V E  +      + ++   M         +PL
Sbjct: 886 IKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVPL 943

Query: 664 KAEGYESKRY 673
            AE      +
Sbjct: 944 IAEVGVGDNW 953


>gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
 gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1]
          Length = 928

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGPAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96]
 gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96]
          Length = 930

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/705 (15%), Positives = 205/705 (29%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S           Y++   ++  +F             HD            + 
Sbjct: 355 AFDTETTSLD---------YSK-AQIVGVSFAVTPGKAAYVPLAHDYPGVPDQLDRSEIL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           + L+  LEN     +  N  ++  VL     + +       T++ +           +  
Sbjct: 405 EKLRPLLENPRKAKLGQNLKYDTHVLANH-GIALRGIA-HDTMLESYVLNSTATKHNMDD 462

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G E I      E       +       +      Y   D  +T ++
Sbjct: 463 LAKEY--------LGVETIHY----EDVAGKGAKQIGFQEVSIDQAAPYAAEDADITLQL 510

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L                 E  L  +   I + G  +D A+    +  +  +   L+Q
Sbjct: 511 HQVLNAKLAQHPRLLELYSDMEVPLISVLARIENNGVLIDAAMLAQQSLELSSQIISLEQ 570

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
               L      +    ++++  L+ +  L           +T + VL       P    +
Sbjct: 571 HAHDLAGQT-FNLGSPKQIQDILYDQQKLPVLKKTPKGQPSTEESVLQELALDYPLPKLI 629

Query: 277 FNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   S+      + L + ++   GR+  +     A+ TGR S      QN+P  S  
Sbjct: 630 LEYR-SLSKLKSTYTDKLPQQIDGQTGRIHTSYHQAIAA-TGRLSSSDPNLQNIPIRSEE 687

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             +                         +R   IA EGKK+V AD + IE R++A ++ +
Sbjct: 688 GRK-------------------------IRQAFIAPEGKKIVAADYSQIELRIMAHLSAD 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  LKAF   +D++  T A  F VAP QVT D R   K +                    
Sbjct: 723 EGLLKAFSEEQDVHRATAAEVFGVAPEQVTTDLRRSAKAINF--------------GLIY 768

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    A                                     +  +     +  ++ 
Sbjct: 769 GMSSFGLAQQ------------------------------LGLSRSQAQSYIDLYFARYP 798

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V    + + +   +                             +    GR L   ++ +
Sbjct: 799 GVKNYMDRIREQARE--------------------------QGYIETLFGRRLYLPEINS 832

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA--GYDIVLTVH 629
             +          R            +Q  + DI+   M+       K      +++ VH
Sbjct: 833 RNAARRQY---AERTAINAP------MQGTAADIIKRAMIAADQWLYKEQPDAKMIMQVH 883

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +    + A+ +  +M +       +PL  +      +
Sbjct: 884 DELVFEIAEEHVDDCAAKIRSIMCAAAD--LDVPLIVDIGIGNNW 926


>gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 917

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 111/706 (15%), Positives = 208/706 (29%), Gaps = 170/706 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET S           Y E   V+  +F  +          HD           V+ 
Sbjct: 341 AFDTETTSLD---------YME-ARVVGVSFAIEPGKAAYVPFGHDYLGAPVQLTEAVVL 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
             LK  LE+     V  N  ++R VL     +++    +  T++ +      ++   + +
Sbjct: 391 GKLKPLLEDPARLKVGQNLKYDRNVLLNH-GIELQGIAY-DTMLESYVLNSTASRHDMDS 448

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L A     E       +    ++        Y   D  +T  +
Sbjct: 449 LARRY------------LNAETISFEEIAGKGVKQLTFNQIELEQAAPYAAEDADITLRL 496

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L                 E  L  +   +   G  ++  L H  +Q ++V   +L++
Sbjct: 497 HQALWGKLSAEPGLAKVFSEIELPLLPVLARMERLGTTIEPKLLHQQSQEIEVRLAELEK 556

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L   LF + GL +   T     +T + VL+   +       +
Sbjct: 557 QAHELAGQ-EFNLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYELPQ-L 614

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                  ++      + L   +    GR+  +     A+ TGR S      QN+P  +  
Sbjct: 615 LMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVAA-TGRLSSTDPNLQNIPVRNEQ 673

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   I   G KLV AD + IE R++A ++G+
Sbjct: 674 GRR-------------------------IRQAFIPCAGYKLVAADYSQIELRIMAHLSGD 708

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F VA   VT D R   K +                    
Sbjct: 709 KGLLTAFAEGKDIHKATAAEVFGVALEAVTSDMRRSAKAINF--------------GLIY 754

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        ++    + +++ 
Sbjct: 755 GMS------------------------------AFGLAKQLGIGRAEAQKYMDLYFERYP 784

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V E      Q                                 +    GR L   D+ +
Sbjct: 785 GVLEYMERTRQQA--------------------------DAQGYVETLFGRRLYLPDIKS 818

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-------ATKAGYDIVLTV 628
             + L    +   R            +Q  + DI+   M+N              +++ V
Sbjct: 819 RNAGLR---KAAERAAINAP------MQGTAADIIKRAMINVDGWIRGIEDQSIRMLMQV 869

Query: 629 HDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E  +       +++   M++       +PL  E      +
Sbjct: 870 HDELVFEIREEKLEEYIAIIKEKMSAAAE--LDVPLVVEAGTGDNW 913


>gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654]
 gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654]
          Length = 932

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 99/715 (13%), Positives = 200/715 (27%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET S  ++                                H             
Sbjct: 346 YVAVDTETTSLNEM----------QAEFAGICLAVVPGEACYIPVGHKVGDGEGLFADDK 395

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                     +   LK  LE+  +  +  N+ ++  +        + +     T++++ +
Sbjct: 396 LAEGQLSLDDVLAALKPVLEDPAILKIFQNAKYDTKIFSRH---GLNVAPIDDTMLMSYA 452

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  + E           G   I+     +T            +       +
Sbjct: 453 MFSGLHNHGMDTLSEHY--------LGHTPISI----KTLLGTGKSAITFDKVKIEDAVK 500

Query: 160 YCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  VT  +++  +P   +E          + L  +   +   G  VD      ++ 
Sbjct: 501 YAAEDADVTLRLWQLFKPRLHREKVTTVYETLERPLVPVLAQMEMHGVQVDRDTLSRMSN 560

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L      +    ++L   LF + GL      +T    T   VL  
Sbjct: 561 AFAQKMAGLEAEIHELAGQS-FNVGSPKQLGEILFDKLGLEGGKKGKTGAYATGADVLED 619

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    +V + R   S+      + L   ++ D     T      + TGR +     
Sbjct: 620 LAAQHDLPARVLDWRQ-LSKLKSTYTDALQTHIDPDTGRVHTSYLQTGASTGRLASTDPN 678

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +                              +R   +A EGK LV  D + IE
Sbjct: 679 LQNIPIRTEEGRR-------------------------IREAFVAPEGKVLVSLDYSQIE 713

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +AG +   +AF  GED++  T +  F+V   ++T D R   K +          
Sbjct: 714 LRILAHVAGIESMKQAFRDGEDIHAATASEMFDVPLDEMTPDVRRQAKAINF-------- 765

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 766 ------GVIYGIS------------------------------GFGLARNLRIARGEAQG 789

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + +K+  + E  ++     ++                          +  +    G
Sbjct: 790 FIDRYFEKYPGIKEYMDDTVAFAKE--------------------------HGHVATLFG 823

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--- 622
           R +   ++               R            +Q  + DI+   M+    A     
Sbjct: 824 RKIHTPEINAK----GPHAGFARRAAINAP------IQGSAADIIRRAMIRMPDAISGLP 873

Query: 623 -DIVLTVHDEIVCETPD-TDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E  +   +   S++  +M     P+    +PL  +  +   +
Sbjct: 874 VKMLLQVHDELIFEVEEGGVDKAVSVIRDVMEGAADPAVKLDIPLVVDAGQGANW 928


>gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53]
 gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53]
          Length = 726

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 275/726 (37%), Positives = 365/726 (50%), Gaps = 63/726 (8%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L+ D ET SP+ +   G+  YAE   ++LFA+     PV++WDC     MP+ L  AL 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALH 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
           N  V +  HNS+F+RTVL     + IP+ RW  ++  A ++ LP AL  + E L++  + 
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K ++GK L+A FCK     C   R  +  H   W  F EY + DVT  R++ KRL   +
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHN 187

Query: 180 SKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   +
Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   L    G+ L D+ + T +R L  +  L     ++ + R +AS ++  K   L+  
Sbjct: 248 ALLHHLSTAHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +          D
Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDD 366

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408
            + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF   +         
Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTW 426

Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435
                                            Y   YA SF +AP  VTK QR IGKV 
Sbjct: 427 HSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQ 486

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
           ELALGY GG  AF   A+   ++L   A        P   ++A     W + NH      
Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAAQAAL--PPLLLQEATELLEWTKANHRPTFGL 544

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+E
Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893]
 gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893]
          Length = 911

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 210/705 (29%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S          +Y  D  V+  +F  +          HD            + 
Sbjct: 335 AFDTETTSL---------RYM-DADVVGVSFAIEPGEAAYVPFGHDYMGAPEQLDRDTVL 384

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
             LK  LE+     +  N  +++ VL     +++       T++ +       +   + +
Sbjct: 385 SQLKPLLEDPKKAKLGQNLKYDKNVLANH-GINLNGIA-EDTMLESYVLNSVGSRHDMDS 442

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G++ I      E+      +    ++      G Y   D  +T  +
Sbjct: 443 LAMQY--------LGEQTITF----ESIAGKGAKQLTFNQIELEQAGPYAAEDADITLRL 490

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               +  L  +   +  RG  +  +     +Q +     +L++
Sbjct: 491 HQALRPQLEKTGRLQEVYEKIDLPLVPVLSRMEQRGAMISASTLRKHSQELAERMAELEK 550

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           E          +    ++L+   + + GL +   T     +T + VL            +
Sbjct: 551 EAHEEAG-ESFNLGSPKQLQAIFYDKMGLPVVKKTPKGAPSTAEPVLQELAHEHTLPRLI 609

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   S+      +TL E ++       T      + TGR S      QN+P  S   
Sbjct: 610 LEHR-SLSKLKSTYTDTLPELIHHRTGRIHTSYHQAVTATGRLSSSEPNLQNIPIRSEQG 668

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   +A EG KLV AD + IE R++A ++G++
Sbjct: 669 RR-------------------------IRQAFVAPEGYKLVAADYSQIELRIMAHLSGDK 703

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AFE GED++  T A  F VA   V+ DQR   K +                    G
Sbjct: 704 GLLTAFEKGEDIHRATAAEVFGVAVDDVSGDQRRSAKAINF--------------GLIYG 749

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    +  +                                     +     + +++  
Sbjct: 750 MSAFGLSRQLD------------------------------VGRHQAQEYIDRYFERYPA 779

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +  + + +                              +  +    GR L   ++   
Sbjct: 780 VLKYMDNIRKQAHD--------------------------DGYVETFYGRRLYLPEINAR 813

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVH 629
              +        R            +Q  + DI+   M++         +    ++L VH
Sbjct: 814 NKQMQQA---AERTAINAP------MQGTAADIIKRAMVSVEDWLQEHHQDDARMILQVH 864

Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE++ E  ++        L   M++  S    +PL  E      +
Sbjct: 865 DELILEVRESAVDTIREGLEKRMSAAAS--LDVPLLVEAGVGNNW 907


>gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92]
 gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92]
          Length = 922

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 104/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S           Y E   ++  +F  +          HD            + 
Sbjct: 347 AFDTETTSLN---------YME-AELVGVSFAIEPGKAAYVPVAHDYMGAPEQITRETLL 396

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           + +K  LE++D   V  +  ++  VL     +++       T++ +           + +
Sbjct: 397 EKMKPLLESSDHKKVGQHLKYDMNVLARY-GIELTGIE-FDTMLESYVLNSTATRHDMDS 454

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L  +  K E       +    ++        Y   D  +T  +
Sbjct: 455 LADRY------------LGLKTIKFEDIAGKGKKQLTFNQIELEQAAPYAAEDADITLRL 502

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + +                 E+ L  +   I   G  VD ++    +  +     +L++
Sbjct: 503 HQAINAQLSKDETLTSVFNDIERPLIPVLSHIERNGALVDASMLGEQSIELAERMVELER 562

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+  LF E  + +   T     +T + VL       P    +
Sbjct: 563 QAYDIAG-KEFNLASPKQLQQILFEELSIPVIKKTPKGAPSTAEEVLQELALDYPLPKLI 621

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   S+      + L   +N       T      + TGR S      QN+P  ++  
Sbjct: 622 LEHR-SLSKLKSTYTDKLPLMINPGTGRIHTSYHQAVTATGRLSSTDPNLQNIPVRTQEG 680

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA EG K+V AD + IE R++A ++ +Q
Sbjct: 681 RR-------------------------IRHAFIAPEGYKVVAADYSQIELRIMAHLSQDQ 715

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G D++  T A  F V   QV+ DQR   K +                    G
Sbjct: 716 GLLDAFSKGADIHRATAAEVFKVELDQVSDDQRRSAKAINF--------------GLIYG 761

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +         +  + + + +  
Sbjct: 762 MS------------------------------AFGLAKQLGIARKDAAQYIEHYFETYPG 791

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V    +++    ++                             +    GR L   ++   
Sbjct: 792 VQHYMDDIRAKAQE--------------------------QGYVETLFGRRLYLPEIKAR 825

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHD 630
            +          R            +Q  + DI+   M+   K          +++ VHD
Sbjct: 826 NAMRRQA---AERTAINAP------MQGTAADIIKRAMVTVDKWLAESDFDVRMIMQVHD 876

Query: 631 EIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E  DT   +    +   M +       +PL  E    + +
Sbjct: 877 ELVFEVRDTQVDSFVEAVKDKMATAAD--LDVPLLVEAGVGENW 918


>gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002]
 gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002]
          Length = 887

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 104/705 (14%), Positives = 201/705 (28%), Gaps = 166/705 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM---- 53
            + +D ET S   +          +  ++  +F   +         H        +    
Sbjct: 311 VVSLDTETTSLDQM----------EARLVGISFSVTEGEAAYLPLAHHYAGVPEQLDLAA 360

Query: 54  -PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110
               LK  LEN     +  N  ++R VL     + +       TL+ +          + 
Sbjct: 361 TLARLKPWLENPARKKLGQNLKYDRHVLANH-GIALAGVA-DDTLLASYVIESHLTHNMD 418

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +             G+  ++     E       +          +   Y   D  +T  
Sbjct: 419 DLARRH--------LGESTVSY----EEICGKGAKQIGFAEVDIAVASNYAAEDADITLR 466

Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + + L               E  +  +   +   G  +D       +  +  +  +L+QE
Sbjct: 467 LNRALAGKLEGRLASVYRDIELPVAEVLFAMERNGVLIDRQRLAEQSHQLGSQMLQLEQE 526

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTET----TCQRVLSSNKKLTPQAIQ 275
                     +    ++L+  LF + G+  +    T +    T + VL       P    
Sbjct: 527 AYQQAGQP-FNLNSPKQLQEILFGKLGIDTKGVKKTPSGGFSTDESVLEQLALDHPLPKL 585

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++      + L   +  D     T      + TGR S      QN+P  +  
Sbjct: 586 ILQYR-GLAKLKSTYTDKLPSLIRPDTGRVHTNYAQAVAITGRLSSSDPNLQNIPVRTAE 644

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       VR   IA  G ++V AD + IE R++A ++ +
Sbjct: 645 GRR-------------------------VREAFIAPPGHRIVSADYSQIELRIMAHLSDD 679

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF +GED++ TT A  F V   QVT +QR   K +   L                
Sbjct: 680 ANMLAAFASGEDIHKTTAAEVFGVTREQVTSEQRRAAKAINFGLI--------------Y 725

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    A  +                                   A ++    +  +  
Sbjct: 726 GMSAFGLAAQLDIE------------------------------RNAAQQYIDRYFMRFP 755

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V++      +   +                             +    GR L   ++  
Sbjct: 756 GVADYMQRTREMARE--------------------------QGYVETVFGRRLYLPEIRA 789

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629
           +     +      R            +Q  + D++   M+   +       G  +++ VH
Sbjct: 790 SNPGRRS---GAERAAINAP------MQGTAADLIKLAMIAVQRWLVAEGLGSKLIMQVH 840

Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P+ +       L  +M         +PL AE    + +
Sbjct: 841 DELVLEVPEAELARVKERLPQIMAGVAE--LKVPLLAEVGAGESW 883


>gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34]
 gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34]
          Length = 923

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 97/705 (13%), Positives = 198/705 (28%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     +T            V+  +F  ++         HD            + 
Sbjct: 347 AFDTETDGLDYMT----------ANVVGVSFAIEEGKAAYVPLAHDYLDAPAQLDRDWVL 396

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           + LK  LE+     +  N  F+ +++     +++       T++ +           + +
Sbjct: 397 EQLKPLLEDPKQAKIGQNLKFDASIVARY-GIEMQGI-VFDTMLESYVFNSVVGRHDMDS 454

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L  +    E       +    ++      G Y   D  +T  +
Sbjct: 455 LALRY------------LEHKNISFEEVAGKGKKQLTFNQIDLEQAGPYAAEDADITLRL 502

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   +   G  VD  L    +  + V   ++++
Sbjct: 503 HNTLYPKVEADDKLKHVFENIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAVRLDEIEK 562

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+  LF + GL         T +T + VL       P    +
Sbjct: 563 KAFEI-AEQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLPKLL 621

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L + +N       T      + TGR S      QN+P  +   
Sbjct: 622 LEYR-GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEG 680

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   +A  G K++  D + IE R++A ++G++
Sbjct: 681 RR-------------------------IRQAFVAQSGYKILAVDYSQIELRIMAHLSGDK 715

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A   ++    V+ +QR   K +                    G
Sbjct: 716 ALLDAFRHGKDIHAATAAEILSLDIENVSSEQRRRAKAINF--------------GLIYG 761

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    A  +                                     +     + +++  
Sbjct: 762 MSAFGLAKQLDM------------------------------GRNEAQNYMNVYFERYPG 791

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E       A                                +    GR L   D+ + 
Sbjct: 792 VLEYMESTRNAA--------------------------SEQGYVETLFGRRLYLPDIKSR 825

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVH 629
                   +   R            +Q  + DI+   M+          +    +++ VH
Sbjct: 826 NGLRR---KAAERAAINAP------MQGTAADIIKLAMIAVDDWVQQQPEGDVRLLMQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  ++      + +  LM         +PL A+      +
Sbjct: 877 DELVFEVKESALEAVTASVKALMEQAA--MLDVPLIADTGYGDNW 919


>gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS]
 gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS]
          Length = 937

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/704 (15%), Positives = 208/704 (29%), Gaps = 167/704 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55
           ID ET S  ++             ++  +F  +          H+            +  
Sbjct: 365 IDTETTSLDEMV----------AQIVGVSFSVEPGEAAYIPLTHNYPDAPAQLPIDEVLA 414

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG 113
            LK  LEN +   +  +  ++R V      +++  +    T++ +    +  P  L ++ 
Sbjct: 415 KLKPWLENPEKKKLGQHIKYDRHVFANH-GIEVEGYA-HDTMLQSYVLEVHKPHGLASLA 472

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E              L       E             +       EY   D   T ++ +
Sbjct: 473 ERH------------LGRSGISYEDLCGKGAHQISFSQVDIAKAAEYSCEDSDQTLDVHR 520

Query: 174 RLEPLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L P     ++L ++ Q           +   G  +D A     +  +      L+QE  
Sbjct: 521 TLWPQLEANEKLRFVYQLEMDSSEALYRVERNGVMIDSATLAAQSHELGTRIMALEQEAY 580

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            +      +    +++    F + GL +   T +    T + VL    +  P   ++  +
Sbjct: 581 EIAGQP-FNLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEH 639

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L +  N   GR+        A  TGR S      QN+P  +     
Sbjct: 640 R-GLSKLKGTYTDKLGQLANPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTPEGRR 697

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    VR   +A  G  +  AD + IE R++A ++G++  
Sbjct: 698 -------------------------VREAFVAPAGSVIASADYSQIELRIMAHISGDESL 732

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  G D++  T A  F   P QV+ +QR   KV+                    G++
Sbjct: 733 LRAFTEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVIN--------------FGLIYGMS 778

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A        A     + +  ++  V 
Sbjct: 779 SFGL------------------------------AKNLGIETKAAASYIERYFARYPGVK 808

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
              +E     ++                             +    GR L   ++ +   
Sbjct: 809 AYMDETKALAKE--------------------------QGYVETVFGRRLYLPEINSPNG 842

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                     R            +Q  + D++   M+         K    +++ VHDE+
Sbjct: 843 PRRG---GAERAAINAP------MQGTAADLIKLSMVKVQNVLDEEKRATKMIMQVHDEL 893

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V E P+ +     + +  LM      A  +PL AE      + K
Sbjct: 894 VFEVPEAEVEWVRAEIPRLMAGVA--ALKVPLLAEIGIGPNWDK 935


>gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301]
 gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5
           exonuclease [Shigella flexneri 2a str. 301]
          Length = 928

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 101/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y      VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEHADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------LGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069]
 gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069]
          Length = 915

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/702 (15%), Positives = 209/702 (29%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   +          +  ++  +F  D+         H             + 
Sbjct: 341 AFDTETTSLNYI----------EAELVGMSFALDNGEAAYLPVAHSYMGAPEQLERDEVL 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
           + LK  LE+     V  N  ++ +VL      DI +      T++ +      ++     
Sbjct: 391 KQLKPLLESEKHKKVGQNLKYDMSVLANY---DIELAGIEFDTMLESYCLNSVAS----- 442

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     +     L     K E             +        Y   D  +T  + +
Sbjct: 443 ---RHDMDTLAL-HHLNHVNIKFEEIAGKGKNQLTFDQIEVEQAAPYASEDADITMRLHQ 498

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +L P   +              L  +   +   G  VD  L    + + +    +L++E 
Sbjct: 499 KLWPELKQNEGPTQIFQHIEMPLLRILSKVERNGVLVDGKLLLEKSHLFEKRLKELEKEA 558

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+   + E GL           +T + VL       P    +  
Sbjct: 559 YEIAG-KEFNLGSPKQLQVIFYEELGLPILKKTPKGQPSTAEEVLQELALDYPLPKLILE 617

Query: 279 NRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L   + +  GR+  +     A+ TGR S      QN+P  +    
Sbjct: 618 HR-GLSKLKSTYTDKLPRMISDKTGRVHTSYHQAIAA-TGRLSSTEPNLQNIPIKTEEGR 675

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R+  IA +G K++ AD + IE R++A ++ ++ 
Sbjct: 676 -------------------------SIRTAFIAPKGSKILAADYSQIELRIMAHLSQDEG 710

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAFE G D++  T A  F+V   +VT +QR   K +   L Y              G+
Sbjct: 711 LLKAFEEGLDVHSATAAEVFDVPLDEVTSNQRRNAKAINFGLIY--------------GM 756

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  + T+                                  +     +  ++  V
Sbjct: 757 SAFGLAKQIDTD------------------------------RNTAQDYINTYFARYPGV 786

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   +                             +   +    GR L   ++ +  
Sbjct: 787 ETYMESTKEKA--------------------------ADLGYVETLYGRRLYLPEIHSKN 820

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGYDIVLTVHDEI 632
                  +   R            +Q  + DI+   M+   K      G  +++ VHDE+
Sbjct: 821 GMRR---KAAERTAINAP------MQGSAADIIKLAMLEVDKWLKDVKGIKMIMQVHDEL 871

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E  +     A   +  LM S       +PL A+      +
Sbjct: 872 VFEVEEDKLELAQKEIPKLMQSVAE--LSVPLIADVGVGDNW 911


>gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700]
 gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700]
          Length = 985

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 98/705 (13%), Positives = 203/705 (28%), Gaps = 165/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----------HDP 51
             + +D ET     ++            ++  +F  ++                      
Sbjct: 409 KLIAVDTETDGLDYMS----------ANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKS 458

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                LK  LEN ++  V  N  F+ T+      +++       T++L+ +        +
Sbjct: 459 TALAALKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIE-FDTMLLSYTLDSTGRHNM 516

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G + I      E            ++      GEY   D  VT 
Sbjct: 517 DDLAKRY--------LGHQTIGF----EDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTM 564

Query: 170 EIFKRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L      +  L  L Q            +   G  +D       +  +    T L
Sbjct: 565 KLQQVLWEKLKSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERLTAL 624

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           + +   L      +    ++L+  LF + GL           +T + VL           
Sbjct: 625 EMQAHELAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELAYSHELPK 683

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R   S+      + L + +N       T      + TGR S      QN+P  + 
Sbjct: 684 VLVEHR-GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 742

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA +G K++ AD + IE R++A ++ 
Sbjct: 743 EGRR-------------------------IRQAFIARDGYKIIAADYSQIELRIMAHLSN 777

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF  G+D++ +T A  F +   QVT +QR   K +                   
Sbjct: 778 DAGLINAFAQGKDIHRSTAAELFGLPLEQVTSEQRRNAKAINF--------------GLI 823

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    +                                        +R    + Q++
Sbjct: 824 YGMSSFGLSRQ------------------------------LGISRADAQRYMDLYFQRY 853

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V    +++ +  +                              +    GR L   ++ 
Sbjct: 854 PGVQTFMHDIREKAK--------------------------AQGYVETLFGRRLYLPEIN 887

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
           ++ +      +   R            +Q  + DI+   M+   +         +++ VH
Sbjct: 888 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEITRDDPDIHMIMQVH 938

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E           ++   M +       +PL  +    + +
Sbjct: 939 DELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 981


>gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB]
 gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB]
          Length = 906

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/704 (15%), Positives = 199/704 (28%), Gaps = 168/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
            +D ET S                 ++  +              H             + 
Sbjct: 332 ALDTETTSLDSFA----------ARIVGISLSVTPGEACYIPLAHTAPGVADQLPREEVL 381

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV 112
             LK  LE+     V  N+ +++ V      + +       T++ +          L  +
Sbjct: 382 ARLKSWLESAAHKKVLQNAKYDQHVFANH-GIALSGIA-HDTMLQSYVIESDKGHDLGQL 439

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                        G   IA     E       +     +        Y   D  VT  + 
Sbjct: 440 CTRH--------LGLATIAY----EDLCGKGAKQITFDQVDIERAATYAAEDSDVTLRVH 487

Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             L P               E     +   I   G  +D  +    +  +  +   L+ +
Sbjct: 488 NVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEMGQKIMALEAQ 547

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              L      +    ++L   LF + GL ++  T +    T + VLS      P    + 
Sbjct: 548 AYELAGQP-FNLASPKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELALDYPLPKLLL 606

Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            +R   S+      + L   +N   GR+        A  TGR +      QN+P  S   
Sbjct: 607 EHR-SLSKLKGTYTDKLPRMVNPQTGRVHTHFSQA-AVVTGRLASSDPNLQNIPVRSEEG 664

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +                         +R+  IA  G  +V AD + IE R++A ++G++
Sbjct: 665 RK-------------------------IRTAFIAPAGSSIVSADYSQIELRIMAHLSGDE 699

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  GED++  T    F V P +V  DQR + K +                    G
Sbjct: 700 RLLDAFAHGEDVHKATAGEIFGVTPLEVGPDQRRVAKSINF--------------GLIYG 745

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +     +A +     +  ++  
Sbjct: 746 MS------------------------------AFGLARQLGLERSAAQTYIDRYFARYPG 775

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V+    E  ++  Q                          +  +    GR L + D+ ++
Sbjct: 776 VARYMEEARESARQ--------------------------HGYVETAFGRRLWFPDIRSS 809

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
                       R            +Q  + D++   M+              ++L VHD
Sbjct: 810 NGNRRQ---GAERAAINAP------MQGTAADLIKLAMIAVQNWLEKSALKSRLILQVHD 860

Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E++ E PD +  +    L  LM         +PL  E      +
Sbjct: 861 ELLLEVPDGELMDVRTHLPRLMGQVAE--LKVPLVVEVGVGPNW 902


>gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042]
          Length = 928

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 101/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPSVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   I  E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIGPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1]
 gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1]
          Length = 928

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 102/701 (14%), Positives = 205/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +              ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDN----------HSANMVGLSFACEPGVAAYVPVAHDYIGAPEQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+     V  N  ++R +L     +++    W  T++ + +    +       
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAW-DTMLESYTLDSVAG------ 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + E + L  +    E            ++      G Y   D  VT ++  +
Sbjct: 455 --RHDMDSLSE-RWLKHKTITFEEIAGKGKNQLTFNQIDLEQAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K              L  +   I   G  +D  +    ++ + +   +L+Q+  
Sbjct: 512 MWPKLQKREGPLNVFRNIEMPLVPVLSRIERNGVKIDPQVLQKHSEEITLRLAELEQKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF  G+D++  T A  F +    V+ +QR   K +                    G++ 
Sbjct: 725 KAFAEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKESQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 835 RRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQEEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E            ++ LM S+   A  +PL  E      +
Sbjct: 886 FEVHKDALDAVSKKIHELMESSM--ALDVPLLVEVGSGDNW 924


>gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
 gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP]
          Length = 930

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 102/705 (14%), Positives = 209/705 (29%), Gaps = 165/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 354 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN D+  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 404 TALAAIKPILENPDIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 462 DDLAKRY--------LGHETIAF----ESIAGKGKNQLTFNQIPLEQATEYAAEDADVTM 509

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 510 KLQQALWLKLQQEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTAL 569

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++   L      +    ++L+  LF + GL           +T + VL           
Sbjct: 570 EEQAYELAGQP-FNLASTKQLQEILFDKLGLPILQKTPKGAPSTNEEVLEELAYSHELP- 627

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 688 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +                   
Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------GLI 768

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    +  +                                     ++    + Q++
Sbjct: 769 YGMSAFGLSRQLDI------------------------------SRPDAKKYMDLYFQRY 798

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +   ++ +  +                              +    GR L   D+ 
Sbjct: 799 PSVQQFMTDIREKAK--------------------------AQGYVETLFGRRLYLPDIN 832

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-----IVLTVH 629
           ++ +      +   R            +Q  + DI+   M+   +  Y      +++ VH
Sbjct: 833 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIYHDPDIEMIMQVH 883

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +   M         +PL  E    + +
Sbjct: 884 DELVFEVRSEKVEFFREQIKQQMEDASELV--VPLIVEVGVGQNW 926


>gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
 gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 726

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 275/726 (37%), Positives = 366/726 (50%), Gaps = 63/726 (8%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     MP+ L  AL 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALH 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
           N  V +  HNS+F+RTVL     + IP+ RW  ++  A ++ LP AL  + E L++  + 
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K ++GK L+A FCK     C   R  +  H   W  F EY + DVT  R++ KRL   +
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHN 187

Query: 180 SKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  LW+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   +
Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   L    G+ L D+ + T +R L  +  L     ++ + R +AS ++  K   L+  
Sbjct: 248 ALLHHLSTAHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S E +   I  +          D
Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDD 366

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408
            + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF   +         
Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTW 426

Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435
                                            Y   YA SF +AP  VTK QR IGKV 
Sbjct: 427 HSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQ 486

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
           ELALGY GG  AF   A+   ++L   A        P   ++A     W + NH      
Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAAQAAL--PPLLLQEATELLEWTKANHRPTFGL 544

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+E
Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
 gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043]
          Length = 928

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 103/705 (14%), Positives = 198/705 (28%), Gaps = 163/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
                D ET S           Y E   ++      D          H            
Sbjct: 350 DIFCFDLETTSLN---------YME-ADIVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRA 399

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LK 110
            +   LK   E+     +  N  ++ +VL    ++++   R   T++ +      +    
Sbjct: 400 SVLAALKPLWEDPAKAKIGQNLKYDISVLARY-DIEVA-GRLEDTMLASYVLNATATRHD 457

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               ALK   +K    +E                +     + A      Y   DV +T  
Sbjct: 458 MDSLALKYLGEKTISFEE----------IAGKGAKQLTFDQIALEQAAPYACEDVDITLR 507

Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L P               E  L  +   +   G  +D    H  ++ ++    +L+
Sbjct: 508 LHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSRELEKRLRELE 567

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
                L      +    ++L   LF E  + +   T     +T + VL       P    
Sbjct: 568 TRAYELAG-REFNLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEELALDYPLPKV 626

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R   ++      + L + +N+  R   T      + TGR S      QN+P  +  
Sbjct: 627 IIEHR-GFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNIPIRTEE 685

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             +                         +R   +A  G ++V AD + IE R++A ++G+
Sbjct: 686 GRK-------------------------IRQAFVARPGYRIVAADYSQIELRIMAHLSGD 720

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G D++  T A  F VA   V+ +QR   K +                    
Sbjct: 721 KGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINF--------------GLIY 766

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                    +        +     +  ++ 
Sbjct: 767 GMS------------------------------AWGLGRQLHIERNQAQTYIDRYFDRYP 796

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V+     +                               ++  +    GR L   ++  
Sbjct: 797 GVARFMERIRAQA--------------------------ADDGYVETVFGRRLYLPEINA 830

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
                 T  +   R            +Q  + DI+   M++  +          +V+ VH
Sbjct: 831 QN---RTRRQAAERTAINAP------MQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVH 881

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +         +   M         +PL  E      +
Sbjct: 882 DELVFEVKEAQVDAFTDAVRQRMEGAAK--LDVPLTVEANAGDNW 924


>gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
 gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 102/706 (14%), Positives = 201/706 (28%), Gaps = 164/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET S   +             ++  +F  ++         HD           
Sbjct: 350 DVFAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPAQLDRD 399

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110
            + + LK  LE+     V  N  ++ +VL     +++   +   T++ +           
Sbjct: 400 WVLEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHD 457

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               AL+                   E       +    ++        Y   D  VT  
Sbjct: 458 MDSLALRFLQHS----------CISFEQIAGKGKKQLTFNQIELDEASPYAAEDADVTLR 507

Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  RL     +++            L  +   I   G  +D       +Q +     +L+
Sbjct: 508 LHNRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDDMKLSAQSQEIAQRLDELE 567

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275
           Q+   +      +    ++L+  LF + GL         T +T + VL       P    
Sbjct: 568 QKAYEI-AEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKL 626

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++      + L + +N +     T      + TGR S      QN+P  +  
Sbjct: 627 ILEYR-GLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNDE 685

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G K++  D + IE R++A ++G+
Sbjct: 686 GRR-------------------------IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGD 720

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           Q  L AF+ G+D++  T A        QV+ +QR   K +                    
Sbjct: 721 QALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GLIY 766

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     + +++ 
Sbjct: 767 GMS------------------------------AFGLAKQLGIPRGEAQDYMNKYFERYP 796

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +   +   A                            +   +    GR L   ++ +
Sbjct: 797 GVMQYMEDTRSAA--------------------------ADQGYVETIFGRRLHLPEIKS 830

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTV 628
                    +   R            +Q  + DI+ + M+   +           +++ V
Sbjct: 831 RNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGQGRVKLLMQV 881

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E  ++        +  LM S       +PL AE      +
Sbjct: 882 HDELVFEVEESSLAEIESKVQQLMESAAD--LDVPLVAEAGHGDNW 925


>gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1]
 gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1]
          Length = 915

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 105/702 (14%), Positives = 193/702 (27%), Gaps = 160/702 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET              A+   ++  +F  + H        HD            + 
Sbjct: 337 AFDTETTGLD----------AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVL 386

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK  LE+     V  N+ ++  +L      +++    +  T++ +      +      
Sbjct: 387 LALKPLLEDPAKAKVGQNAKYDINILANGSPPIEMRGVAY-DTMLESYVLNSTAT----- 440

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     + + K L       E       +    ++      G Y   D  +T  +  
Sbjct: 441 ---RHDMDSLAQ-KYLDHTTIAFEDIAGKGAKQLTFNQITLDKAGPYAAEDADITLRLHH 496

Query: 174 RLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQEL 222
            L+   ++   +  +   I              G  VD  L    +  + V+  +L+   
Sbjct: 497 ALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRA 556

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L T L+ + G+ +   T     +T + VL    +      +V  
Sbjct: 557 YELAG-ETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELAEQGYPLPEVLM 615

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                S+      + L   +N       T      + TGR S      QN+P  +     
Sbjct: 616 QYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRR 675

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G KL+ AD + IE R++A +A ++  
Sbjct: 676 -------------------------IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF    D++  T A  F VA   VT DQR   K +                    G++
Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAIN--------------FGLIYGMS 756

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A  +                                     +     +  ++  V 
Sbjct: 757 AFGLAKQI------------------------------GVDRKQSQDYIDRYFARYPGVL 786

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                      +                             +    GR L   D+     
Sbjct: 787 AYMERTRAQAAE--------------------------QGFVETLFGRRLYLPDINAKNP 820

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632
            L    +   R            +Q  + DI+   M+              ++L VHDE+
Sbjct: 821 ALR---KGAERTAINAP------MQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDEL 871

Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E  +         +   M+        +PL  E      +
Sbjct: 872 VLEVREDLVEQVKDEIRQHMSQAAQ--LDVPLLVEAGVGANW 911


>gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110]
 gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110]
          Length = 940

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/704 (15%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55
           ID ET S  ++             ++  +F  +          H+            +  
Sbjct: 368 IDTETTSLDEMV----------ARIVGVSFSIEPGAAAYVPLAHNYPDAPAQLPFDEVLA 417

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG 113
            LK  LEN     +  +  ++R V      +++  +    T++ +       P  L ++ 
Sbjct: 418 RLKPWLENPAKKKLGQHIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEAHRPHGLASLA 475

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E              L       E          P  +       EY   D   T ++  
Sbjct: 476 ERH------------LGRSGISYEDLCGKGAHQIPFSQVDIAKAAEYSCEDSDQTLDVHL 523

Query: 174 RLEPLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L P   ++++L ++ Q           +   G  +D       +  +      L+QE  
Sbjct: 524 ALWPQIERDEKLRFIYQLEMDSSEALYRVERNGVLIDAPTLAAQSHELGTRIMALEQEAY 583

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            +      +    +++    F + GL +   T +    T + VL    +  P   ++  +
Sbjct: 584 EIAGQP-FNLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEH 642

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L +  N   GR+        A  TGR S      QN+P  +     
Sbjct: 643 R-GLSKLKGTYTDKLGQLANPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTPEGRR 700

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    VR   IA  G  +  AD + IE R++A ++G++  
Sbjct: 701 -------------------------VREAFIAPPGSVIASADYSQIELRIMAHISGDESL 735

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  G D++  T A  F   P QV+ +QR   KV+                    G++
Sbjct: 736 LRAFREGIDVHRATAAEVFGATPDQVSSEQRRYAKVIN--------------FGLIYGMS 781

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A        A       +  ++  V 
Sbjct: 782 SFGL------------------------------ARNLGIETKAAASYIDRYFARYPGVK 811

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
              +E     ++                             +    GR L   ++ +   
Sbjct: 812 AYMDETKALAKE--------------------------KGYVETVFGRRLYLPEINSPNG 845

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                     R            +Q  + D++   M+         K    +++ VHDE+
Sbjct: 846 PRRG---GAERAAINAP------MQGTAADLIKLSMIKVQNVLDEEKRATRMIMQVHDEL 896

Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V E P+ +       +  LM         +PL AE      + K
Sbjct: 897 VFEVPEAEIEWVRTEIPRLMAGVAE--LKVPLLAEIGIGPNWDK 938


>gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
 gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799]
          Length = 922

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/705 (15%), Positives = 200/705 (28%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            ID ET S   +             ++  +F  +          HD            + 
Sbjct: 347 AIDTETTSIDYMA----------AELVGLSFAVEAGKGAYLPVAHDYEGAPVQLDRDTVL 396

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             LK  LE+T    V  N  ++ +VL     + +       T++ +           +  
Sbjct: 397 AKLKPLLEDTAPRKVGQNLKYDMSVLAKY-GIALNGIA-FDTMLESYCFNSTAGRHNMDD 454

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G + I      E       + K  ++        Y   D  +T  +
Sbjct: 455 MALKY--------LGHKTIHF----EDIAGKGAKQKTFNQIPLEEAAPYAAEDADITLRL 502

Query: 172 FKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P   +           E+ L  +   +   G  +D    H  +  +      L+Q
Sbjct: 503 HQHLWPRLQELAGPTRVFEQLERPLVPIMSAMERHGVLIDTDQLHQQSSEIATTLDSLEQ 562

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +    V +    ++L+   F + G  +   T     +T + VL       P    +
Sbjct: 563 QAHEIAG-EVFNLGSTKQLQAIFFDKLGYPVLKKTPKGAPSTAEEVLQELALDYPLPKII 621

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   ++      + L + +   GR+  +      + TGR S      QN+P  +   
Sbjct: 622 LEHR-SLAKLKNTYTDKLPQLVKPSGRVHTSYHQAV-TATGRLSSSDPNLQNIPIRTAEG 679

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA EG KL+  D + IE R++A ++ ++
Sbjct: 680 RR-------------------------IRQAFIAPEGYKLLAIDYSQIELRIMAHLSQDK 714

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  G+D++  T A  F V    VT +QR   K +                    G
Sbjct: 715 GLLEAFAAGKDIHKATAAEVFGVDFDSVTTEQRRRAKAVNF--------------GLIYG 760

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    A  +                                     +     +  ++  
Sbjct: 761 MSAFGLAKQLDI------------------------------GRAEAQEYIDRYFHRYPG 790

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E  +                                     +    GR L   ++   
Sbjct: 791 VLEYMDRTRAQAHD--------------------------KEYVETLMGRRLHLPEINAR 824

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVH 629
                       R            +Q  + DI+ + M+          +    +++ VH
Sbjct: 825 NKMRQQA---AERTAINAP------MQGTAADIIKKAMLLVADYLSQQAEDEIHLIMQVH 875

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +         L  LM+        +PL AEG     +
Sbjct: 876 DELVFEVREGVAEQHKDALCELMSQAAE--LDVPLLAEGGLGDNW 918


>gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 927

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 105/706 (14%), Positives = 206/706 (29%), Gaps = 164/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             +  D ET S           Y E   ++  +F  ++         HD           
Sbjct: 348 DVIAFDTETDSLD---------YME-ANLVGVSFAIEEGVAAYVPVAHDYMDAPKQLERD 397

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110
            + + LK  LE+     V  N  ++ +VL     +D+   +   T++ +           
Sbjct: 398 WVLEQLKPILEDGSRAKVGQNLKYDASVLARY-GIDMRGIK-FDTMLASYVYNSVAGKHD 455

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               AL+                   E       +    ++        Y   D  VT  
Sbjct: 456 MDSLALRFLQHS----------CISFEQVAGKGKKQLTFNQIDLEQAAPYAAEDADVTFR 505

Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + +RL+                E  L  +   I   G  +D       +Q + +    L+
Sbjct: 506 LHQRLQKSLDASDKLASIYRDIEMPLVPVLSRIERTGVLIDDMKLSAQSQEIALRLDALE 565

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275
           Q+   +      +    ++L+  LF + GL         T +T + VL       P   +
Sbjct: 566 QQAFDIAGQ-EFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPEK 624

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++      + L + +N       T      + TGR S      QN+P  +  
Sbjct: 625 ILEYR-GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 683

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G K++  D + IE R++A ++G+
Sbjct: 684 GRR-------------------------IRQAFVAPHGYKIMAIDYSQIELRIMAHLSGD 718

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L+AF+ G+D++  T A    V  +QVT +QR   K +                    
Sbjct: 719 RALLEAFQQGKDIHAATAAEILGVDISQVTAEQRRRAKAVNF--------------GLIY 764

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        ++    + +++ 
Sbjct: 765 GMS------------------------------AFGLAKQLGIPRGEAQQYMDTYFERYP 794

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +   +      +                             +    GR L   ++ +
Sbjct: 795 GVMQYMEDTRSIAAE--------------------------QGYVETIFGRRLHLPEIQS 828

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTV 628
                    +   R            +Q  + DI+ + M+               +++ V
Sbjct: 829 RNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDDWIQTEGQGRVKLLMQV 879

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E  +T        + +LM         +PL AE    + +
Sbjct: 880 HDELVFEVEETSLPEIESKIRNLMEQAAQ--LKVPLVAEAGHGENW 923


>gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 957

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 107/730 (14%), Positives = 215/730 (29%), Gaps = 190/730 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET +   ++            ++  +FG  +         H   +        
Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LEN DV  +  N  ++ T+        
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 462

Query: 88  IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           + +      T++ + +        +  + +           G + I      E       
Sbjct: 463 VQVAGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193
                 + A  +  +Y   D  VT ++ + L P               E  L  +   I 
Sbjct: 511 NQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIE 570

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D       +  ++   ++L+Q + S     V +    ++L+  LF + GL +  
Sbjct: 571 RNGVLIDPEKLLAQSAEIEQRLSELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            T     +T + VL           ++       S+      + L   +N       T  
Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY 689

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               + TGR S      QN+P  +                              +R   I
Sbjct: 690 HQAVTATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFI 724

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A++G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR
Sbjct: 725 ANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQR 784

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   L                G++    ++                         
Sbjct: 785 RSAKAINFGLI--------------YGMSEFGLSNQ------------------------ 806

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                         ++  + + Q++  V +   ++ ++                      
Sbjct: 807 ------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA--------------------- 839

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                     +    GR L   ++ ++ +      +   R            +Q  + DI
Sbjct: 840 -----SKKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAADI 885

Query: 610 LAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPL 663
           +   M+   KA        +++ VHDE+V E  +      + ++   M         +PL
Sbjct: 886 IKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPL 943

Query: 664 KAEGYESKRY 673
            AE      +
Sbjct: 944 IAEVGVGDNW 953


>gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH]
 gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH]
          Length = 930

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 213/705 (30%), Gaps = 165/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 354 KLIAVDTETDSLDYIS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN ++  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 462 DDLAKRY--------LGHETIAF----ESIAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 569

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELAYSHELP- 627

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 688 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +                   
Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------GLI 768

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  + +        ++    + Q++
Sbjct: 769 YGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQRY 798

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +   ++ +  +                              +    GR L   D+ 
Sbjct: 799 PSVQQFMTDIREKAK--------------------------AQGYVETLFGRRLYLPDIN 832

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
           ++ +      +   R            +Q  + DI+   M+   +        ++++ VH
Sbjct: 833 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVH 883

Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E   +   F    +   M +       +PL  E    + +
Sbjct: 884 DELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926


>gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
 gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976]
          Length = 957

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 108/731 (14%), Positives = 216/731 (29%), Gaps = 192/731 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET S   ++            ++  +FG  +         H   +        
Sbjct: 356 KLVAVDTETDSLDSMS----------ANLVGISFGLANGEACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LEN DV  +  N  ++ T+        
Sbjct: 406 LFAEPTEAETITSFELAKNQLNLTACVTELKPLLENADVKKIGQNIKYDLTIFANH---G 462

Query: 88  IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           + +      T++ + +        +  + E           G + I      E       
Sbjct: 463 VQVEGVAFDTMLESYTLNSTGRHNMDELAERY--------LGHKTIEF----EEIAGKGK 510

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTIN 193
                 + A  +  +Y   D  VT ++ + L P               E  L  +   I 
Sbjct: 511 NQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELDKAPTLVKLFNEIEMPLVEVLSRIE 570

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  ++       +  ++    +L+Q + S     V +    ++L+  LF + GL +  
Sbjct: 571 RNGVLIEPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308
            T     +T + VL           ++       S+      + L   +N   GR+  + 
Sbjct: 630 KTPKGAPSTNEEVLDELAGRGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY 689

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P  +                              +R   
Sbjct: 690 HQAV-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAF 723

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           I ++G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +Q
Sbjct: 724 ITNKGYKIVAADYSQIELRIMAHLANDEGMIIAFAEGKDIHRATAAEIFGLALDQVTSEQ 783

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +   L                G++    ++                        
Sbjct: 784 RRSAKAINFGLI--------------YGMSEFGLSNQ----------------------- 806

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          ++  + + Q++  V +   ++ ++                     
Sbjct: 807 -------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA-------------------- 839

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                      +    GR L   ++ ++ +      +   R            +Q  + D
Sbjct: 840 ------SEKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAAD 884

Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662
           I+   M+   KA        +++ VHDE+V E  +      + ++   M         +P
Sbjct: 885 IIKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEERVEHYSQLIKAEMEKAIQ--LKVP 942

Query: 663 LKAEGYESKRY 673
           L AE      +
Sbjct: 943 LIAEVGVGDNW 953


>gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891]
 gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891]
          Length = 931

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 100/703 (14%), Positives = 200/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  ++         HD            + 
Sbjct: 355 AFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPAQLERDWVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL     +++   +   T++ +              
Sbjct: 405 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 462

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E       +    ++        Y   D  VT  +  
Sbjct: 463 LALRFLQHS----------CISFEQIAGKGKKQLTFNQIELDEASPYAAEDADVTLRLHN 512

Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     +++            L  +   I   G  +D       +Q +     +L+Q+ 
Sbjct: 513 RLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDDMKLGAQSQEIAQRLDELEQQA 572

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL         T +T + VL       P    +  
Sbjct: 573 YEI-AEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLILE 631

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N +     T      + TGR S      QN+P  +     
Sbjct: 632 YR-GLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 690

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA  G K++  D + IE R++A ++G++  
Sbjct: 691 -------------------------IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKAL 725

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF+ G+D++  T A        QV+ +QR   K +                    G++
Sbjct: 726 LEAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GLIYGMS 771

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 772 ------------------------------AFGLAKQLGIPRGEAQDYMNKYFERYPGVM 801

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +                                    +    GR L   ++ +   
Sbjct: 802 QYMEDTRSTA--------------------------SEQGYVETIYGRRLHLPEIQSRNG 835

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 836 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQTEGDGRVKLLMQVHDE 886

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S       +PL AE      +
Sbjct: 887 LVFEVQESALTEIESKVQELMESAAE--LDVPLVAEAGHGDNW 927


>gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
           Polymerase I Complexed With DTMP
 gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
           Polymerase I Complexed With Deoxynucleoside Triphosphate
           And Pyrophosphate
          Length = 605

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 30  AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 79

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 80  ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 137

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 138 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 185

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 246 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 305 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 363

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 364 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 398

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 399 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 444

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 445 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 474

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 475 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 508

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 509 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 559

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 560 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
 gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2]
          Length = 1000

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 112/714 (15%), Positives = 205/714 (28%), Gaps = 174/714 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------D 50
           L  D ET S   +             ++  +     +        H              
Sbjct: 413 LAFDTETNSLDPM----------QADLVGVSLALSPNEACYIPLAHTGAGDGLFSEGQLP 462

Query: 51  PVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
             +P       LK  LE+     V HN  +++ VL       I +  + CT+ ++ +   
Sbjct: 463 GQIPVRDAIAALKGVLEDKGTLKVGHNVKYDQLVLARH---GIDVAPFDCTMCMSYALDA 519

Query: 106 P---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                 +  +          +  G + IA                   + A      Y  
Sbjct: 520 GKNGHGMDELS--------VLHLGHQPIAF----SEVTGKGKGKVTFDKVALEPATHYAA 567

Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            D  VT  +++ L+P            + E+ L  +   +  RG  +D A+   L+    
Sbjct: 568 EDADVTLRLWQVLKPRLAAEGRTTVYETLERPLIAVLARMESRGISIDKAMLARLSSEFA 627

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268
               +++ E+  L      +    +++   LF + GL     T     +T    L    +
Sbjct: 628 QGAARIEDEIAELAG-ERLNVGSPKQMGDILFGKMGLPGGTKTATGMWSTKATALEELAE 686

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
              +  Q      + S+      + L   +N   R   T   L A+ TGR S      QN
Sbjct: 687 AGHKLPQKILEWRQLSKLRSTYTDALPNFVNPQTRRVHTSYALAATTTGRLSSSDPNLQN 746

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +                              +R   +A EG  LV AD + IE R+
Sbjct: 747 IPIRTEEGRR-------------------------IRRAFVAEEGNLLVSADYSQIELRL 781

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A       AF  G D++  T +  FNV    +  + R   K +             
Sbjct: 782 LAEIAEIPALRTAFTEGLDIHAMTASEMFNVPVKDMPAEVRRRAKAINF----------- 830

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G++                                  A +         +  K
Sbjct: 831 ---GIIYGIS------------------------------AFGLANQLGIPREEAGQYIK 857

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            + ++   + +   E      +                          +  +    GR  
Sbjct: 858 RYFERFPGIRDYMEETKTFCRE--------------------------HGYVETLFGRRC 891

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGY 622
            Y ++        +      R             Q  + DI+   M+         K   
Sbjct: 892 HYPEIAAKNP---SIRAFNERAAINARL------QGTAADIIRRAMIRMEPALEKAKLSA 942

Query: 623 DIVLTVHDEIVCETPDTDEFN-ASMLYHLMTS--NPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E P+ +      ++   M +   P+ A  +PLK +   +K +
Sbjct: 943 RMLLQVHDELVFEVPEGEADATIPVVRQCMETASAPAVALAVPLKVDARAAKNW 996


>gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
 gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146]
          Length = 930

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 105/705 (14%), Positives = 207/705 (29%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L+            ++  +              HD            + 
Sbjct: 354 AFDTETDSLDVLS----------ANLVGISCADKPGQACYIPLAHDYLDAPHQLDRQYVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             L+  LE+  +  +  N  ++  V+     + +       T++ +           + +
Sbjct: 404 ARLQPLLEDEGIAKIGQNLKYDIGVMARY-GITLRGVA-FDTMLESYVLNSVAGRHDMDS 461

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L  +    E            ++       EY   D  VT ++
Sbjct: 462 LSARH------------LDHKTITFEEIAGKGKGQLTFNQIPLEQASEYAAEDADVTLQL 509

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P+              +  L  +   +   G  +D A+    +Q + V    L+Q
Sbjct: 510 HQHLWPMLEGESGPSHIFRDIDMPLVPVLSRMERTGVLIDSAILGQHSQELAVRLEALEQ 569

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +  S       +    ++L++ LF +  L +   T     +T + VL    +      QV
Sbjct: 570 QAHSEAG-EPFNLSSTKQLQSILFEKQQLPVLKKTPGGAPSTNEEVLVELAEQGYALPQV 628

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                  ++      + L   +N   GR+  +      + TGR S      QN+P  S  
Sbjct: 629 ILEYRTLAKLKSTYTDKLPLMVNPLTGRVHTSYHQAV-TATGRLSSSDPNLQNIPVRSDE 687

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G ++V AD + IE R++A ++G+
Sbjct: 688 GRR-------------------------IRQAFIAPVGSRIVAADYSQIELRIMAHLSGD 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L+AF  G+D++  T A  F +    V+ DQR   K +                    
Sbjct: 723 KGLLQAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINF--------------GLIY 768

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +R    + +++ 
Sbjct: 769 GMS------------------------------AFGLARQLNIGRGEAQRYMDLYFERYP 798

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V        Q                             +   +    GR L   ++  
Sbjct: 799 GVLAYMERTRQLA--------------------------SDQGYVETLDGRRLYLPEINA 832

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
                    +   R            +Q  + DI+   M+         +    +++ VH
Sbjct: 833 RNGMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDGWLQETQLEVRMIMQVH 883

Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P++        +  LM ++ S A  +PLK +    + +
Sbjct: 884 DELVFEVPESQVEAVVCQVRVLMENSLSLA--VPLKVDIGCGENW 926


>gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
 gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444]
          Length = 929

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 111/711 (15%), Positives = 199/711 (27%), Gaps = 178/711 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            + +D ET S   ++            ++  +              H             
Sbjct: 339 HVAVDTETDSLDSVS----------GGLVGVSLALAPGEACYIPLAHVDPEAKGDGDMFG 388

Query: 52  ----------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
                        +VLK  LE+  V  +  N  ++ +V        I +H    T++++ 
Sbjct: 389 ADPPRQIKMAEALKVLKPMLEDPAVLKIGQNIKYDLSVFAQH---KIHVHPIDDTMLISF 445

Query: 102 SNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
           +         +  + E           G + I      +         K   + A     
Sbjct: 446 ALNAGIHGHGMDDLSERY--------LGHKPITF----KDVAGTGKAQKSFAQVALDKAT 493

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLN 208
           EY   D  VT  +++ L+P    EQ           L  +   +   G  VD  +   L+
Sbjct: 494 EYAAEDADVTLRLWQALKPRLRTEQVTAVYETLDRPLGPVLAEMEQAGVKVDRDMLSRLS 553

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLS 264
              +     L+ E          +    ++L   LF E  L     T+T    T   VL 
Sbjct: 554 ADFNQRMAALEAEAHEQAG-RSFNIGSPKQLGEILFDEMNLPGGKKTKTGAWVTDGDVLE 612

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                     +   +    S+        L  A+N       T   +  ++TGR S    
Sbjct: 613 GLAADGHALPRTIVDWRMLSKLRSTYTEALQAAINKKTGRVHTSYMMAGAQTGRLSSTDP 672

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  +    +                         +R   IA EG  LV AD + I
Sbjct: 673 NLQNIPVRTEEGRK-------------------------IRQAFIAEEGNVLVSADYSQI 707

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA MA      +AF+ G D++  T +  F V    +    R   K +         
Sbjct: 708 ELRILAHMADIPALKQAFKDGLDIHAMTASEMFGVPIEGMDPMVRRQAKAINF------- 760

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G++                                    +         
Sbjct: 761 -------GIIYGIS------------------------------GFGLGRQLGIPSGEAN 783

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           +  K + ++   + +  +E  +    T                            +    
Sbjct: 784 QYIKTYFERFPGIRQYMDETKEFARAT--------------------------GFVKTAF 817

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620
           GR +   D+ +             R+           +Q  + DI+   M+   +A    
Sbjct: 818 GRKIHLPDIKSK----GPARSFAERQAINAP------IQGSAADIIKRAMIRMPEALAEA 867

Query: 621 --GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAE 666
                ++L VHDE+V E P+ +      ++   M +   PS    +PL  E
Sbjct: 868 GLKAQMLLQVHDELVFECPEKEAEKLIKLVQKTMAAADGPSLRLSVPLVVE 918


>gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli]
 gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli]
          Length = 898

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 111/706 (15%), Positives = 203/706 (28%), Gaps = 167/706 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
             D ET S                 ++  +F             HD            + 
Sbjct: 323 SFDTETTSLN----------VMQAELVGLSFAIGGEKPVYIPLAHDYPDAPQQLNRQWVL 372

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           Q LK   E+     + H+  ++  +L   + + +       T++ +          +L +
Sbjct: 373 QQLKPLFEDPKQIKIGHHLKYDMNILA-HYGIQLRGID-FDTMLESYLLDSASNQHSLDS 430

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
               LK    K    +E                + K  ++   +  G Y   D  +   +
Sbjct: 431 AA--LKHLDHKTIRFEE----------IAGKGAKQKTFNQINLQDAGPYAAEDAAIALRL 478

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L+P               E  L  +   +   G  +D  L    ++ +      L+Q
Sbjct: 479 HETLKPQLDNVVGLSTVYTEIEMPLVTVLARMERHGVLIDAPLLKKQSRSIAKRLLTLEQ 538

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+T LF + GL           +T + VL +     P    +
Sbjct: 539 QAFQLAG-KPFNLGSPKQLQTILFDDHGLPILEKTPKGQASTSENVLQALALTFPLPKII 597

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   S+      + L E +N       T     A  TGR S      QN+P  +   
Sbjct: 598 LKHRR-LSKLKSTYTDKLPEQINPKTGRVHTSYHQAAVVTGRLSSSDPNLQNIPARTHEG 656

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +                         +R   IA  G  ++ AD + IE R++A  + ++
Sbjct: 657 RK-------------------------IRQAFIAPPGYFILAADYSQIELRIIAHFSQDK 691

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF  G D++  T A   N+   +VT +QR   K +                    G
Sbjct: 692 GLLKAFAQGLDIHQATAAEVLNIPLERVTHEQRRSAKAIN--------------FGLMYG 737

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        +   + +  ++  
Sbjct: 738 MS------------------------------AFGLARQLGISREDAKNYIERYFDRYPG 767

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V      + Q   +                             +    GR L    + +N
Sbjct: 768 VKRYMERIRQRAHEQR--------------------------YVTTLFGRRLNLAFINSN 801

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
            S      R   R             Q  + DI+ + M+         K    +++ VHD
Sbjct: 802 DSLQR---RASERAAINAPL------QGSAADIIKKAMIRIDAELIKKKLDAHMIMQVHD 852

Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+V E  + D   A  L   LM    +    +PL  +      + K
Sbjct: 853 ELVFEIAEHDLQRAKRLIENLMVHTTT--LSVPLVVDIQIGSNWNK 896


>gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222]
 gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222]
          Length = 933

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 205/703 (29%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  D+         HD            + 
Sbjct: 357 AFDTETDSLDYMV----------ANLVGLSFATDEGVAAYVPVAHDYLDAPQQLDRDWVL 406

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL     +++   +   T++ +              
Sbjct: 407 EQLKPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDS 464

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E       +    ++        Y   D  VT  +  
Sbjct: 465 LALRFLQHS----------CISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHN 514

Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     +++            L  +   I   G  +D  L    +Q + V   +L+Q+ 
Sbjct: 515 RLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKA 574

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL +   T +    T + VL       P    +  
Sbjct: 575 YEI-AEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLIIE 633

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N++     T      + TGR S      QN+P  +     
Sbjct: 634 YR-GLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 692

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G++  
Sbjct: 693 -------------------------IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKAL 727

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF+ G+D++  T A    V    VT +QR   K +                    G++
Sbjct: 728 LEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNF--------------GLIYGMS 773

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 774 ------------------------------AFGLAKQLGIPRGEAQHYMDTYFERYPGVM 803

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   A                                +    GR L   ++ +   
Sbjct: 804 QYMEDTRSAA--------------------------SEQGFVETIYGRRLHLPEIQSRNG 837

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 838 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDE 888

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S       +PL AE      +
Sbjct: 889 LVFEVEESALAEIESKVQELMESAAE--LEVPLVAEAGHGDNW 929


>gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae]
          Length = 936

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 103/705 (14%), Positives = 205/705 (29%), Gaps = 161/705 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET S   L+            +I  +F  +          H+           
Sbjct: 356 KCFAFDTETDSLDTLS----------AHLIGLSFAIEKGKGAYLPLGHNYLDAPQQLPLD 405

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALK 110
            +   +K  L + ++  +  N  F+  V+      DI +      T++ +      + L 
Sbjct: 406 EVLAAIKPILVDKNIQKIGQNLKFDYGVMANY---DIELKNMAFDTMLESYVLNSVAGLG 462

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
                 +     + +   L  +    E            ++        Y   D  VT  
Sbjct: 463 ------RHDMDSLAQRH-LNHKTITFEEIAGKGKNQLTFNQIPLEQASTYAAEDADVTLL 515

Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L P               E  L  +   +   G  +D       ++ +     +++
Sbjct: 516 LHQTLWPQLESEPKLKGIFQQIEMPLVPVLARMERVGVLIDANKLAKQSREIASRLMEIE 575

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275
           +E  ++      +    ++L+  LF +  L +   T +    T + VL            
Sbjct: 576 KEAYAI-AEQEFNLASPKQLQAILFEKLQLPVVKKTPSGAPSTNEEVLEELAFSHELPKI 634

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R   S+      + L   ++   +   T      + TGR S      QN+P  +  
Sbjct: 635 ILQHR-SLSKLKSTYTDKLPMMIHPKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEE 693

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA EG K+V AD + IE R++A ++ +
Sbjct: 694 GRR-------------------------IRQAFIAREGYKIVAADYSQIELRIMAHLSQD 728

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F V    VT +QR   K +                    
Sbjct: 729 KGLLDAFAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINF--------------GLIY 774

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  + +        +     + +++ 
Sbjct: 775 GMS------------------------------AFGLSRQLGITRGQAQHYMDRYFERYP 804

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V        +  +Q  E G                             GR L   D+ +
Sbjct: 805 GVLSYM---ERTRKQAAEQGYVETLA-----------------------GRRLYLPDINS 838

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
             +      +   RE           +Q  + DI+ + M+   K          +++ VH
Sbjct: 839 RNAMRR---KASEREAINAP------MQGTAADIIKKAMIALDKWIESVKPDLYMLMQVH 889

Query: 630 DEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  ++    +   +  LM  +      +PLK +      +
Sbjct: 890 DELVFEVKESAVDRSQQKIRQLMEQSMQ--LTVPLKVDVGIGDNW 932


>gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 726

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 275/726 (37%), Positives = 370/726 (50%), Gaps = 63/726 (8%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L+ D ET SP+ +   G+  YAE   ++LFA+   + PV++WDC     MP+ L  AL 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALH 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
           N  V +  HNS+F+RTVL     +DIP+ RW  ++  A ++ LP AL  + E L++  + 
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K ++GK L+A FCK     C   R  +  H   W  F EY + DV   R++ KRL   +
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLPSHN 187

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               EL  W+LDQTINDRG  VD  LA      V+  +  L    E+LT G V ++   +
Sbjct: 188 YSGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAATQRD 247

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   L  E G+ L D+ + T +R L  +  L     ++ + R +AS ++  K   L+  
Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S   +   I  +          D
Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDD 366

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF------------- 402
            + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF             
Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTW 426

Query: 403 ---------------------------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
                                        G+D+Y   YA SF +AP  VTK+QR IGKV 
Sbjct: 427 HSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQ 486

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
           ELALGY GG  AF   A+   ++L   A        P   ++A    +W + N       
Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL--PPLLLQEAVEALQWTKANQRPTFGL 544

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQFAATDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDE++ E  D   FNA+ L  LM + P WA+GLPL AEG++
Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQ 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145]
 gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145]
          Length = 920

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/705 (15%), Positives = 198/705 (28%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET S                 ++ F+  FD          HD           
Sbjct: 346 KRFAFDTETTSLD----------YRIAQIVGFSVAFDAQNAYYVPLAHDYEGAPEQLNRE 395

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
           V+   +K  LE+  V  + H+  ++  VL+    + +    +  T++ +           
Sbjct: 396 VILAQIKPILEDESVKKIGHHLKYDAHVLENH-GIHLA-GWYFDTMLASYVLNSVATRHG 453

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++        Y   D  VT
Sbjct: 454 MDDVARLY------------LSHLTTTYEQVAGKGAKQKTFNQIPLETAAHYAAEDAHVT 501

Query: 169 REIFKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL             +   + + G  +D+A    L          
Sbjct: 502 YRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQN 561

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L+ ++  +      +    +++   LF + GL     T     +T + VL       P A
Sbjct: 562 LENQIMEIAG-ESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEKI--EHPIA 618

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   R   S+      + L +  N D     T      + TGR S      QN+P  +
Sbjct: 619 QLILEYR-GLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQNIPIRA 677

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A EG+ L+ AD + IE R++A ++
Sbjct: 678 EIGR-------------------------QIRKAFVAPEGRVLLAADYSQIELRLMAHLS 712

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L AF  G+D++  T A    +A   VT DQR   K +                  
Sbjct: 713 QDEALLDAFIHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVN--------------FGL 758

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K +  +
Sbjct: 759 LYGMSEFGLIRQ------------------------------LGFTRQESQDYIKQYFHR 788

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + +      Q   +                             +    GR L   D+
Sbjct: 789 YPGIYDYMQRTRQVALE--------------------------QGFVETLLGRRLYTPDI 822

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVH 629
                 +    +   R             Q  + DI+   M+   K        ++L VH
Sbjct: 823 DARNMMVR---KAAERAAINAPL------QGSAADIIKMAMIEVDKMLPKDQAKMLLQVH 873

Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +      +  L  +M S       +PL  E  + K +
Sbjct: 874 DELVFEVDEDIADELAPKLAEVMQSVLQ--ISVPLVVEVGKGKNW 916


>gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 957

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 108/731 (14%), Positives = 216/731 (29%), Gaps = 192/731 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET +   ++            ++  +FG  +         H   +        
Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LEN DV  +  N  ++ T+        
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 462

Query: 88  IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           + +      T++ + +        +  + +           G + I      E       
Sbjct: 463 VQVAGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTIN 193
                 + A  +  +Y   D  VT ++ + L P               E  L  +   I 
Sbjct: 511 NQLTFDKIAIDVASKYAAEDADVTMKLHQVLTPELDKTPTLVKLFNEIEMPLVEVLSRIE 570

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D       +  ++    +L+Q + S     V +    ++L+  LF + GL +  
Sbjct: 571 RNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308
            T     +T + VL           ++       S+      + L   +N   GR+  + 
Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY 689

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P  +                              +R   
Sbjct: 690 HQAV-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAF 723

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA +G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +Q
Sbjct: 724 IARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ 783

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +   L                G++    ++                        
Sbjct: 784 RRSAKAINFGLI--------------YGMSEFGLSNQ----------------------- 806

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          ++  + + Q++  V +   ++ ++                     
Sbjct: 807 -------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA-------------------- 839

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                      +    GR L   ++ ++ +      +   R            +Q  + D
Sbjct: 840 ------SEKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAAD 884

Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662
           I+   M+   KA        +++ VHDE+V E  +      + ++   M         +P
Sbjct: 885 IIKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVP 942

Query: 663 LKAEGYESKRY 673
           L AE      +
Sbjct: 943 LIAEVGVGDNW 953


>gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627]
 gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627]
          Length = 928

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 208/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD            + 
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPEQISRERVL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L    ++++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-DIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPELQKHKGPLNVFENIEMPLVPVISRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA +   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPQDHVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
            +       +               +Q  + DI+   M+         K    +++ VHD
Sbjct: 832 NAARRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEKPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D       ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDLDVVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 957

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 107/731 (14%), Positives = 217/731 (29%), Gaps = 192/731 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET +   ++            ++  +FG  +         H   +        
Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGISFGLANGEACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LE+ DV  +  N  ++ T+        
Sbjct: 406 LFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH---G 462

Query: 88  IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           + +      T++ + +        +  + +           G + I      E       
Sbjct: 463 VQVEGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193
                 + A  +  +Y   D  VT ++ + L P               E  L  +   I 
Sbjct: 511 NQLTFDKIAIDIASQYAAEDADVTMKLHQVLSPELEKAPTLVKLFNEIEMPLVEVLSRIE 570

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D       +  ++   ++L+Q + S     V +    ++L+  LF + GL +  
Sbjct: 571 RNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308
            T     +T + VL           ++       S+      + L   +N   GR+  + 
Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY 689

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P  +                              +R   
Sbjct: 690 HQAV-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAF 723

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA +G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +Q
Sbjct: 724 IARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ 783

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +   L                G++    ++                        
Sbjct: 784 RRSAKAINFGLI--------------YGMSEFGLSNQ----------------------- 806

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          ++  + + Q++  V +   ++ ++                     
Sbjct: 807 -------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA-------------------- 839

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                      +    GR L   ++ ++ +      +   R            +Q  + D
Sbjct: 840 ------SEKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAAD 884

Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662
           I+   M+   KA        +++ VHDE+V E  +      + ++   M         +P
Sbjct: 885 IIKVAMIGIDKAIRGDDNIKMIMQVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVP 942

Query: 663 LKAEGYESKRY 673
           L AE      +
Sbjct: 943 LIAEVGVGDNW 953


>gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
 gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
           Manganese
 gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
           Only
 gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
           Manganese
 gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
 gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
           And Europium (Iii) Ion
 gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Short Dna Fragment Carrying 2'-0-
           Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
 gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna Tetramer Carrying
           2'-O-(3-Aminopropyl)- Rna Modification
           5'-D(Tt)-Ap(U)-D(T)-3'
 gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70]
 gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431]
 gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G]
 gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180]
 gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357]
 gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74]
          Length = 605

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 30  AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 79

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 80  ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 137

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 138 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 185

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 246 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 305 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 363

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 364 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 398

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 399 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 444

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 445 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 474

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 475 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 508

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 509 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 559

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 560 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 272/726 (37%), Positives = 365/726 (50%), Gaps = 63/726 (8%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L+ D ET SP+ +   G+  YAE   ++LFA+   D PV++WDC     MP+ L  AL 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
           N  V +  HNS+F+RTVL     ++IP+ RW  ++  A ++ LP AL  + E L++  + 
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K ++GK L+A FCK     C   R  +  H   W  F +Y + DVT  R++ KRL   +
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHN 187

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               EL  W+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   +
Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   L  E G+ L D+ + T +R L  +  L     ++ + R +AS ++  K   L+  
Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
            + DGRLRGTLQF GASRTGRW+G +  P NLPRP+ S   +   I  +          D
Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDD 366

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408
            + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL AF   +         
Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTW 426

Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435
                                            Y   YA SF +AP  VTK QR IGKV 
Sbjct: 427 HSGEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQ 486

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
           ELALGY GG  AF   A+   ++L   A        P   + A    +W + N       
Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL--PPLLLQQAMEALQWTKANQRPTFGL 544

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609
             L + LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+E
Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T]
 gi|332997589|gb|EGK17204.1| DNA polymerase I domain protein [Shigella flexneri VA-6]
          Length = 605

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 30  AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 79

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 80  ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 137

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 138 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 185

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 246 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 305 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 363

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 364 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 398

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 399 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 444

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 445 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 474

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 475 VLEYMERTRAQAKE--------------------------LGYVETLDGRRLYLPDIKSS 508

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 509 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 559

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 560 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|333014001|gb|EGK33362.1| DNA polymerase I domain protein [Shigella flexneri K-227]
          Length = 605

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 30  AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERAL 79

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 80  ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 137

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 138 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 185

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 246 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 305 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 363

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 364 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 398

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 399 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 444

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 445 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 474

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 475 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 508

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 509 NGARRAAAER---------TAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 559

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 560 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46]
 gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46]
          Length = 1016

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 105/711 (14%), Positives = 194/711 (27%), Gaps = 173/711 (24%)

Query: 7    DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---------------- 50
            D ET +            A    ++  +              H                 
Sbjct: 433  DTETNALD----------AHRADLVGVSLATAPGRAAYIPLAHRGSEDLFGEGLLPDQLP 482

Query: 51   -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
               +   LK  LE+  V  V  N  ++  VL     ++I    +  T++++         
Sbjct: 483  WDAVRARLKPLLEDPAVLKVGQNVKYDWLVLVRH-GIEIQP--YDDTMLISYVLDAGKGS 539

Query: 107  SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
              +  +             G + I                    R        Y   D  
Sbjct: 540  HGMDELARRH--------LGHQPITF----ADVTGTGRAKVTFDRVPLDKATAYAAEDAD 587

Query: 167  VTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            VT  +++ ++P  + E            L  +   +   G  VD  +   L+        
Sbjct: 588  VTLRLWRLMKPRLAAEHRATVYETLERPLVPVLARMEREGIRVDRDMLSRLSGDFSQSLA 647

Query: 217  KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272
            +L+ E++ +      S    +++   LF + GL     T +    T   +L         
Sbjct: 648  RLEAEIQEMAG-ETFSVSSPKQIGDILFGKLGLPGAKKTPSGQWATPATLLEELATQGHP 706

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +      + S+      ++L E    +     T   L A+ TGR S      QN+P  
Sbjct: 707  LPRKILEWRQLSKLKSTYTDSLQEHAERESDRVHTSFALAATTTGRLSSSDPNLQNIPIR 766

Query: 333  SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
            +                              +R   +A  G +L+ AD + IE R+LA M
Sbjct: 767  TEEGRR-------------------------IRQAFVADAGHQLISADYSQIELRLLAHM 801

Query: 393  AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
            A      +AF  G D++  T +  F V   ++T D R   K +                 
Sbjct: 802  ADIPQLRQAFADGLDIHAATASAMFGVPLGEMTPDLRRRAKTINF--------------G 847

Query: 453  STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               G++                                  A              K + +
Sbjct: 848  IIYGIS------------------------------AFGLADRLGIPQGEASAFIKQYFE 877

Query: 513  KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            +   +      +    +   + G                             GR   Y  
Sbjct: 878  RFPGIRAY---IEDTKKACRDKGYVTTL-----------------------FGRVCHYPQ 911

Query: 573  VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVL 626
            + +N          + R+           +Q  + DI+   M+    A         ++L
Sbjct: 912  IRSNNP---QERASVERQAINAP------IQGTAADIIRRAMVRMEGALAGAGLTTRMLL 962

Query: 627  TVHDEIVCETPDTDEF-NASMLYHLMTSNPSWA--KGLPLKAEGYESKRYR 674
             VHDE+V E P  +      ++  +M   P  A    +PL  E   +  ++
Sbjct: 963  QVHDELVFEAPQDEVARALPIIARVMEEAPQPAVRLTVPLAVEAKAAANWQ 1013


>gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 957

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 107/730 (14%), Positives = 215/730 (29%), Gaps = 190/730 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET +   ++            ++  +FG  +        +H   +        
Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLMHKEQVTLEPQQSD 405

Query: 54  --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LEN DV  +  N  ++ T+        
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 462

Query: 88  IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           + +      T++ + +        +  + +           G + I      E       
Sbjct: 463 VQVAGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193
                 + A  +  +Y   D  VT ++ + L P               E  L  +   I 
Sbjct: 511 NQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIE 570

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D       +  ++    +L+Q + S     V +    ++L+  LF + GL +  
Sbjct: 571 RNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            T     +T + VL           ++       S+      + L   +N       T  
Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY 689

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               + TGR S      QN+P  +                              +R   I
Sbjct: 690 HQAVTATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFI 724

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A++G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR
Sbjct: 725 ANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQR 784

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   L                G++    ++                         
Sbjct: 785 RSAKAINFGLI--------------YGMSEFGLSNQ------------------------ 806

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                         ++  + + Q++  V +   ++ ++                      
Sbjct: 807 ------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA--------------------- 839

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                     +    GR L   ++ ++ +      +   R            +Q  + DI
Sbjct: 840 -----SKKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAADI 885

Query: 610 LAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPL 663
           +   M+   KA        +++ VHDE+V E  +      + ++   M         +PL
Sbjct: 886 IKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPL 943

Query: 664 KAEGYESKRY 673
            AE      +
Sbjct: 944 IAEVGVGDNW 953


>gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 918

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 112/706 (15%), Positives = 212/706 (30%), Gaps = 170/706 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET S           Y E   ++  +F  +          HD           V+ 
Sbjct: 342 AFDTETTSLD---------YME-ARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLTEAVVL 391

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
             LK  LE+     V  N  ++R VL    ++D+    +  T++ +      ++   + +
Sbjct: 392 GKLKPLLEDPTRLKVGQNLKYDRNVLLNH-DIDLQGIAY-DTMLESYVLNSTASRHDMDS 449

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L       E       +    ++        Y   D  +T  +
Sbjct: 450 LAKRY------------LGVETTSFEDIAGKGVKQLTFNQIELEQAAPYAAEDADITLRL 497

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L                 E  L  +   +   G  +D  L H  +Q +++   +L++
Sbjct: 498 HQTLWGQLEAVPGLCQVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLAELER 557

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L   LF + GL +   T     +T + VL+   +      ++
Sbjct: 558 QAHELAGQ-EFNLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYELP-RL 615

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                  ++      + L   +    GR+  +     A+ TGR S      QN+P  +  
Sbjct: 616 LMEHRTLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPVRNEQ 674

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   I S G KLV AD + IE R++A ++G+
Sbjct: 675 GRR-------------------------IRQAFIPSAGYKLVAADYSQIELRIMAHLSGD 709

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F VA   VT D R   K +                    
Sbjct: 710 KGLLTAFAEGKDIHKATAAEVFGVALDAVTTDMRRSAKAINF--------------GLIY 755

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        ++    + +++ 
Sbjct: 756 GMS------------------------------AFGLAKQLGIGRAEAQKYMDLYFERYP 785

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V E      Q  E                              +    GR L   D+ +
Sbjct: 786 GVLEYMERTRQQAE--------------------------AQGYVETLFGRRLYLPDIKS 819

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-------ATKAGYDIVLTV 628
             + L    +   R            +Q  + DI+   M+N              +++ V
Sbjct: 820 RNAGLR---KGAERAAINAP------MQGTAADIIKRAMINVDGWIRGIEDESIRMLMQV 870

Query: 629 HDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E  +       +++   M++       +PL  E      +
Sbjct: 871 HDELVFEIREEKLEEYTAIIKEKMSAAAE--LHVPLLVEAGTGDNW 914


>gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
 gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3]
          Length = 932

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 205/703 (29%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  ++         HD            + 
Sbjct: 356 AFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL     +++   +   T++ +              
Sbjct: 406 EQLKPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDS 463

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E       +    ++        Y   D  VT  +  
Sbjct: 464 LALRFLQHS----------CISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHN 513

Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     +++            L  +   I   G  VD  L    +Q + V   +L+Q+ 
Sbjct: 514 RLMENIEQDEKLKAIYEEIEVPLIPVMSRIERTGVFVDDMLLGAQSQEIAVRLDELEQKA 573

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL +   T +    T + VL       P    +  
Sbjct: 574 YEI-AEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGSPSTNEEVLQELALDYPLPKLIIE 632

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N++     T      + TGR S      QN+P  +     
Sbjct: 633 YR-GLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 691

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G++  
Sbjct: 692 -------------------------IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKAL 726

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF+ G+D++  T A    V    VT +QR   K +                    G++
Sbjct: 727 LEAFQQGKDIHAATAAEIIGVNIEDVTSEQRRRAKAVNF--------------GLIYGMS 772

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 773 ------------------------------AFGLAKQLGIPRGEAQHYMDTYFERYPGVM 802

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   A                                +    GR L   ++ +   
Sbjct: 803 QYMEDTRSAA--------------------------SEQGFVETIYGRRLHLPEIQSRNG 836

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 837 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDE 887

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S       +PL AE      +
Sbjct: 888 LVFEVEESSLAEIESKVQELMESAAE--LEVPLVAEAGHGDNW 928


>gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51]
 gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51]
          Length = 915

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 108/701 (15%), Positives = 191/701 (27%), Gaps = 158/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET              A+   ++  +F    H        HD            + 
Sbjct: 337 AFDTETTGLD----------AQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAVL 386

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+     V  N+ ++  +L               T++ +      +       
Sbjct: 387 LALKPLLEDPAKAKVGQNAKYDINILANGSPAIAMRGVAYDTMLESYVLNSTAT------ 440

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + + K L       E       +    ++      G Y   D  +T  +   
Sbjct: 441 --RHDMDSLAQ-KYLDHTTIAFEDIAGKGAKQLTFNQIDLDKAGPYAAEDADITLRLHHA 497

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
           L+   ++   L  +   I              G  VD AL H  +  +  +  +L++   
Sbjct: 498 LQARLAQTPSLQPVLMDIEMPLVPVLAKIERQGALVDAALLHVQSGELGEKMAELERRAY 557

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L   L+ + G+ +   T     +T + VL    +L     +V   
Sbjct: 558 ELAG-EEFNLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDELAELGYPLPEVLMQ 616

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               S+      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 617 YRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRR- 675

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IAS G KL+ AD + IE R++A +A ++  L
Sbjct: 676 ------------------------IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLL 711

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF    D++  T A  F VA   VT DQR   K +                    G++ 
Sbjct: 712 HAFRNDLDVHRATAAEVFGVALENVTVDQRRKAKAIN--------------FGLIYGMSA 757

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +                                     +     +  ++  V  
Sbjct: 758 FGLAKQI------------------------------GVDRKQSQDYIDRYFARYPGVLA 787

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                     +                             +    GR L   D+      
Sbjct: 788 YMERTRTQAAE--------------------------QGFVETLFGRRLYLPDINAKNPA 821

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633
           L    +   R            +Q  + DI+   M+N             ++L VHDE+V
Sbjct: 822 LR---KGAERTAINAP------MQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELV 872

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  +         +   M+        +PL  E      +
Sbjct: 873 LEVREDLVEQVKDEIRQHMSKAAQ--LDVPLLVEAGIGANW 911


>gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32]
 gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32]
          Length = 933

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 205/703 (29%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  ++         HD            + 
Sbjct: 357 AFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVL 406

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL     +++   +   T++ +              
Sbjct: 407 EQLKPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDS 464

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E       +    ++        Y   D  VT  +  
Sbjct: 465 LALRFLQHS----------CISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHN 514

Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     +++            L  +   I   G  +D  L    +Q + V   +L+Q+ 
Sbjct: 515 RLMENIEQDEKLKTIYGEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKA 574

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL +   T +    T + VL       P    +  
Sbjct: 575 YEI-AEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLIIE 633

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N++     T      + TGR S      QN+P  +     
Sbjct: 634 YR-GLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 692

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G++  
Sbjct: 693 -------------------------IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKAL 727

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF+ G+D++  T A    V    VT +QR   K +                    G++
Sbjct: 728 LEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNF--------------GLIYGMS 773

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 774 ------------------------------AFGLAKQLGIPRGEAQHYMDTYFERYPGVM 803

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   A                                +    GR L   ++ +   
Sbjct: 804 QYMEDTRSAA--------------------------SEQGFVETIYGRRLHLPEIQSRNG 837

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 838 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDE 888

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S       +PL AE      +
Sbjct: 889 LVFEVEESALAEIESKVQELMESAAE--LEVPLVAEAGHGDNW 929


>gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 957

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/730 (14%), Positives = 214/730 (29%), Gaps = 190/730 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET +   ++            ++  +FG  +         H   +        
Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LE+ DV  +  N  ++ T+        
Sbjct: 406 LFAEPAEAETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH---G 462

Query: 88  IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           + +      T++ + +        +  + +           G + I      E       
Sbjct: 463 VQVEGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193
                 + A  +  +Y   D  VT ++ + L P               E  L  +   I 
Sbjct: 511 NQLTFDKIAIDIASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIE 570

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D       +  ++    +L+Q + S     V +    ++L+  LF + GL +  
Sbjct: 571 RNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            T     +T + VL           ++       S+      + L   +N       T  
Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY 689

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               + TGR S      QN+P  +                              +R   I
Sbjct: 690 HQAVTATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFI 724

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A++G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +QR
Sbjct: 725 ANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQR 784

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   L                G++    ++                         
Sbjct: 785 RSAKAINFGLI--------------YGMSEFGLSNQ------------------------ 806

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                         ++  + + Q++  V +   ++ ++                      
Sbjct: 807 ------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA--------------------- 839

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                     +    GR L   ++ ++ +      +   R            +Q  + DI
Sbjct: 840 -----SKKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAADI 885

Query: 610 LAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPL 663
           +   M+   KA        +++ VHDE+V E  +      + ++   M         +PL
Sbjct: 886 IKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPL 943

Query: 664 KAEGYESKRY 673
            AE      +
Sbjct: 944 IAEVGVGDNW 953


>gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6]
 gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6]
          Length = 931

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 103/712 (14%), Positives = 199/712 (27%), Gaps = 168/712 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
                D ET              A    ++  +F    H        H            
Sbjct: 344 KLFAFDTETT----------GIDAHQAQLVGVSFAVQPHEAAYIPLTHAYIGVPDQLDRD 393

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSNG 104
            + + LK  LE+     +  ++ F+  +L  C         + +       T++ +    
Sbjct: 394 TVLRALKPLLEDPTKLKIGQHAKFDMNILANCAIDGDPAQGITVQGIA-FDTMLESYVLN 452

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                     A +     + + K L       +       +     + A    G Y   D
Sbjct: 453 --------ATATRHDMDSLAK-KYLDYDTVSFQDIAGKGAKQLTFDQIALEQAGPYAAED 503

Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
             VT  + + L                 E  L  +   I  +G  VD  L    +  +  
Sbjct: 504 ADVTLRLHQELHAQLAAIPSLASVLTDIEMPLVPVLARIERQGALVDAQLLGVQSIELGN 563

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKL 269
           +  +L+++   +      +    ++L   L+ + G+ +   T     +T + VL+   + 
Sbjct: 564 KMVELERQAFEIAG-EAFNLGSPKQLGAILYEKLGMPVLKKTGKGQASTAEDVLAKLAED 622

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQN 328
                +V       S+      + L E +N   GR+  +     A+ TGR S      QN
Sbjct: 623 DYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQN 681

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +                              +R   +A +G KL+ AD + IE R+
Sbjct: 682 IPVRTAEGRR-------------------------IRQAFVAPKGYKLLAADYSQIELRI 716

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  + AF    D++  T A  F V   +VT DQR   K +             
Sbjct: 717 MAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGEVTSDQRRSAKAINF----------- 765

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G+                                 +   +        +    
Sbjct: 766 ---GLIYGMG------------------------------AQKLGKDIGVDTKTAKAYID 792

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            +  ++  V E                                    +   +    GR L
Sbjct: 793 VYFARYPGVREYMERTRAQA--------------------------SDQGYVETFFGRRL 826

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGY 622
              D+ +N+           R            +Q  + DI+ + M+             
Sbjct: 827 YLPDIHSNKP---QERAAAERTAINAP------MQGTAADIIKKAMVRVDNWLTASGLDA 877

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E  +         +   M++       +PL  E      +
Sbjct: 878 KVILQVHDELVLEVREDLVAEVSEKVREHMSAAAQ--LDVPLLVEVGVGDNW 927


>gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 933

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 100/705 (14%), Positives = 207/705 (29%), Gaps = 165/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----------HDP 51
             + +D ET     ++            ++  +F  ++                      
Sbjct: 357 KLIAVDTETDGLDYMS----------ANLVGISFALENGEAAYLPLHLDYLGAPKTLEKN 406

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                LK  LEN ++  +  N  F+ T+      +D+       T++L+ +        +
Sbjct: 407 TALSALKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIE-FDTMLLSYTLDSTGRHNM 464

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G + I+     E            ++      GEY   D  VT 
Sbjct: 465 DDLAKRY--------LGHQTISF----EDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTM 512

Query: 170 EIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L      +             L  +   +   G  +D       +  +    T L
Sbjct: 513 KLQQVLWEKLEPQPGLVALYQSIELPLLSVLSRMERCGVLIDSDALFLQSNEITERLTAL 572

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           + +  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 573 EMQAYALAGQP-FNLASTKQLQEILFGKLGLPVLQKTPKGAPSTNEEVLEELAYSHELPK 631

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R   S+      + L + +N       T      + TGR S      QN+P  + 
Sbjct: 632 VLVEHR-GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 690

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +                            +R   IA +G K++ AD + IE R++A ++ 
Sbjct: 691 AGRR-------------------------IRQAFIARDGYKIIAADYSQIELRIMAHLSN 725

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F +   QVT +QR   K +   L Y             
Sbjct: 726 DQGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIY------------- 772

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++   F                                         +R    + Q++
Sbjct: 773 -GMSSFVFPAR------------------------------LGISRADAQRYMDLYFQRY 801

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V    +++ +  +                              +    GR L   ++ 
Sbjct: 802 PNVQTFIHDIREKAK--------------------------AQGYVETLFGRRLYLPEIN 835

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVH 629
           ++ +      +   R            +Q  + DI+   M+             +++ VH
Sbjct: 836 SSNAMRR---KGTERVAINAP------MQGTAADIIKRAMIKLDGITRDDPDIHMIMQVH 886

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E           ++   M +       +PL  +    + +
Sbjct: 887 DELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 929


>gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1]
 gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1]
          Length = 904

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 96/702 (13%), Positives = 197/702 (28%), Gaps = 162/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
            ID ET S   +          D  ++  +   +          H             + 
Sbjct: 328 SIDLETNSLNYM----------DAEIVGVSLAVEPGQAAYLPVAHCGPGAPDQLDRDRVL 377

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L+  LE      +  N  ++ +VL     +++    +  +++ +      +       
Sbjct: 378 DALRPLLEAEQPEKMGQNLKYDMSVLARY-GIELRGVAY-DSMLESYVLDSTAT------ 429

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     +   K L       E       R  P         G Y   D  +   + + 
Sbjct: 430 --RHDMDSLAS-KYLGVEVTSYEQLCGKGVRQVPFAEIDVERAGHYAAEDADIALRLHQL 486

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P    E             L  +   +   G  VD  L    ++ +     +++Q   
Sbjct: 487 LYPRLQAESGLLRVFSQLEMPLLPVLSRMERHGVRVDCDLLERQSEELAGRMAEVEQRAH 546

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
                   +    ++++   F   GL           +T + VL        +  ++   
Sbjct: 547 EEAG-EAFNLGSPKQIQEIFFERMGLPVIQRTPKGQPSTAESVLEELSARGHELPRLILE 605

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
               S+      + L + ++ D GR+  +     A+ TGR S      QN+P  +     
Sbjct: 606 HRGLSKLKSTYTDKLPQLIHRDTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPVRTPEGRR 664

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +AS G +L+ AD + +E R++A ++G++  
Sbjct: 665 -------------------------IRKAFVASPGHRLITADYSQVELRIMAHLSGDEGL 699

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +AFE GED++  T A  F  A  +V  +QR   K +                    G++
Sbjct: 700 RRAFEQGEDIHRATAAEVF--AADEVNDEQRRAAKAIN--------------FGLIYGMS 743

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                               +        +     + +++  V 
Sbjct: 744 ------------------------------AWGLGRQLGIPRDEAQTYIDRYFERYPGVR 773

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
              +   +   +                             +    GR L   ++ +   
Sbjct: 774 AFMDRAREQARE--------------------------QGYVETVFGRRLHVPEIHSRN- 806

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
                     R            +Q  + D++   M++             +V+ VHDE+
Sbjct: 807 --RQRREYAERTAINAP------MQGTAADVIKRAMIDVDALLNERFPESRLVMQVHDEL 858

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E P+         +  LM  +      +PL+ E      +
Sbjct: 859 VLEVPEAQATAVGDEVRRLMEGSDRGMVSVPLEVELGVGDDW 900


>gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
 gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43]
          Length = 980

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 104/725 (14%), Positives = 208/725 (28%), Gaps = 184/725 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-----DDHP----VELWDCVHDPV- 52
            +  D ET S            A    ++ F+        D              H    
Sbjct: 382 VVAFDTETTSLD----------AMQAELVGFSLAVPEAAPDTGELKVRACYAPLAHSNGV 431

Query: 53  ------------------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
                                 LK  LE   V  +  N  ++  V+      +I I  + 
Sbjct: 432 GDLLGGGGLQPGQMPVRAALDELKALLEEPAVLKIGQNLKYDMLVMAQH---NIEIKSFD 488

Query: 95  CTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
            T++L+           + A+ E           G + I      +          P  +
Sbjct: 489 DTMLLSYVLDAGQGGHGMDALSERW--------LGHKTIGY----KDVTGSGKSAIPFAQ 536

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDV 201
            A      Y   D  VT  ++  L+               E+ L  +   +  RG  VD 
Sbjct: 537 VAIDKATAYAAEDAEVTLRLWHALKVRLVSEGMTSVYERLERPLAPVLMRMEQRGIRVDR 596

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----T 257
            +   L+  +      L+ E++ L      +    ++L   LF +  L     T+    +
Sbjct: 597 QILSRLSGELAQGAAALEAEIQELAG-ENFNVGSPKQLGEILFDKMSLPGGSKTKTGQWS 655

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T  + L        +  +   +  + ++      + L   +N + +   T   + A+ TG
Sbjct: 656 TSAQALEDLAAAGHELPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSFAMAATTTG 715

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P  +    +                         +R+  +A  G  L+
Sbjct: 716 RLSSSDPNIQNIPVRTAEGRK-------------------------IRTAFVAEPGNVLI 750

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +A      +AF  G D++  T +  F V    +  + R   K +  
Sbjct: 751 SADYSQIELRVLAHVANIPQLTQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINF 810

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            +                G++    A+ +                               
Sbjct: 811 GII--------------YGISAFGLANQLSIE---------------------------- 828

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
              +      + + ++   + +  +      ++                          N
Sbjct: 829 --RSEAGDYIRKYFERFPGIKDYMDATKAEAKE--------------------------N 860

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
             +    GR   Y ++ ++            R            +Q  + DI+   M+  
Sbjct: 861 GYVTTIFGRRAHYPEIRSSNP---QVRAFNERAAINAP------IQGSAADIIRRAMVRM 911

Query: 618 TKA------GYDIVLTVHDEIVCETPD-TDEFNASMLYHLMTSNPSWAKG--LPLKAEGY 668
             A         ++L VHDE++ ET +   +    ++  +M +    A    +PL+ +  
Sbjct: 912 EPALEAAGMQARMLLQVHDELIFETAEADADKIIPVIVEVMENAAMPAIDMAVPLQVDAR 971

Query: 669 ESKRY 673
            +K +
Sbjct: 972 AAKNW 976


>gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2]
 gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2]
          Length = 928

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 207/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQIARDRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+ +   V  N  ++R +L     +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDENAHKVGQNLKYDRGILANY-GIELRGIT-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ +     +L+Q+  
Sbjct: 512 MWPELQQHKGPLNVFENIDMPLVPVLSRVERNGVKIDPAVLHKHSEELTQRLNELEQKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINKKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++   
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNGA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+         +    +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D  +    ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLESVSKKIHQLMEN--ETQIDVPLLVEVGSGENW 924


>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis]
          Length = 920

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 109/705 (15%), Positives = 198/705 (28%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET S                 ++ F+  FD          HD           
Sbjct: 346 KRFAFDTETTSLD----------YRIAQIVGFSVAFDAQDAYYVPLAHDYEGAPEQLNRE 395

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
           V+   +K  LE+  V  + H+  ++  VL+    + +    +  T++ +           
Sbjct: 396 VILAQIKPILEDESVKKIGHHLKYDAHVLENH-GIHLA-GWYFDTMLASYVLYSVATRHG 453

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++        Y   D  VT
Sbjct: 454 MDDVARLY------------LSHLTTTYEQVAGRGAKQKTFNQIPLETAAHYAAEDAHVT 501

Query: 169 REIFKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL             +   + + G  +D+A    L          
Sbjct: 502 YRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQN 561

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L+ ++  +      +    +++   LF + GL     T     +T + VL       P A
Sbjct: 562 LENQIMEIAG-ESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEKI--EHPIA 618

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   R   S+      + L +  N D     T      + TGR S      QN+P  +
Sbjct: 619 QLILEYR-GLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQNIPIRA 677

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A EG+ L+ AD + IE R++A ++
Sbjct: 678 EIGR-------------------------QIRKAFVAPEGRVLLAADYSQIELRLMAHLS 712

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L AF  G+D++  T A    +   +VT DQR   K +                  
Sbjct: 713 QDEALLDAFIHGQDVHRRTAAEVLGIPLEEVTNDQRRQAKAVNF--------------GL 758

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K +  +
Sbjct: 759 LYGMSEFGLIRQ------------------------------LGFTRQESQDYIKQYFHR 788

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + +      Q   +                             +    GR L   D+
Sbjct: 789 YPGIYDYMQRTRQVALE--------------------------QGFVETLLGRRLYTPDI 822

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVH 629
                 +    +   R             Q  + DI+   M+   K        ++L VH
Sbjct: 823 DARNMMVR---KAAERAAINAPL------QGSAADIIKMAMIEVDKMLPKDQAKMLLQVH 873

Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +      +  L  +M S       +PL  E  + K +
Sbjct: 874 DELVFEVDEDIADELAPKLAEVMQSVLQ--ISVPLVVEVGKGKNW 916


>gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
 gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881]
          Length = 921

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 99/705 (14%), Positives = 205/705 (29%), Gaps = 162/705 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               +D ET S   +             ++  +   +          H            
Sbjct: 342 DVFALDTETTSLNYM----------QAELVGVSVAVEAGKAAYIPFGHNYPGAPDQLDKQ 391

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            +   LK  LE+ ++  V  N  ++ +VL     + +    +  T++ +        L +
Sbjct: 392 FVLDALKPILEDDNLKKVGQNLKYDMSVLAEDVGITLRGVAY-DTMLESYV------LDS 444

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           V     + S  +   K L  +    E       +    ++        Y   D  VT  +
Sbjct: 445 VATRHDMDSLAL---KYLGRKTISFEEIAGKGAKQLTFNQVGLHEASRYAAEDADVTLRL 501

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   I   G  VD  L    +Q +     +L +
Sbjct: 502 HQTLWPKLEKEGRLTEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRMAELQE 561

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L   L+ +  + +   T     +T + VL       P    +
Sbjct: 562 KACEIAGQ-EFNLSSPKQLGEILYQKLEIPVIKKTPKGAPSTAEAVLQELALEYPLPQVI 620

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
            + R   ++      + L E +N   GR+  +     A+ TGR S      QN+P  S  
Sbjct: 621 MDYR-GVAKLKNTYTDKLPELINQRTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPVRSEE 678

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             +                         +R   +A +G+K+V  D + IE R++A ++ +
Sbjct: 679 GRK-------------------------IRQAFLAPKGRKIVACDYSQIELRIMAHLSDD 713

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +    AFE G D++  T A  +     +V+ + R   K +                    
Sbjct: 714 KGLTDAFEKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINF--------------GLIY 759

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     + +++ 
Sbjct: 760 GMS------------------------------AFGLAKQLGLPRKEAQEYIDLYFERYP 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +   +                                +N  +    GR L   ++ +
Sbjct: 790 GVKKYMADTRALA--------------------------ADNGYVETVYGRRLYLPEIHS 823

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
                    +   R            +Q  + DI+ + M+              +++ VH
Sbjct: 824 KN---GQRRQAAERAAINAP------MQGTAADIIKKAMIKVHDWLETTDFDAKMIMQVH 874

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +    +    +   M S       +PL  +    + +
Sbjct: 875 DELVFEVAEDQVDDLVREVKARMESAAE--LKVPLIVDAGIGENW 917


>gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 930

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/702 (15%), Positives = 216/702 (30%), Gaps = 163/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++T            ++  +F  +          HD            + 
Sbjct: 355 AFDTETDSLDNIT----------ANMVGLSFATEPGIAAYVPVAHDYLDAPEQLSRERVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+ +   V  N  ++R +L+    +++       T++ +        L +V  
Sbjct: 405 ELLKPILEDDNALKVGQNLKYDRGILQNY-GIELRGIA-FDTMLESYI------LDSVAG 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K              L  +   I   G  +D  + H  +  +    T+L+Q+  
Sbjct: 514 MWPKLQKHEGPLNVFQNIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLTELEQKAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 ELAG-EPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   ++      + L   +N   GR+  +     A+ TGR S      QN+P  +     
Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAA-TGRLSSTDPNLQNIPVRNEEGRR 690

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA +   +V AD + IE R++A ++ ++  
Sbjct: 691 -------------------------IRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGL 725

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A  F +    VT +QR   K +                    G++
Sbjct: 726 LTAFAEGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINF--------------GLIYGMS 771

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             + +        ++    + +++  V 
Sbjct: 772 ------------------------------AFGLSRQLNIPRKESQKYMDLYFERYPGVL 801

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E         ++                             +    GR L   D+ ++ +
Sbjct: 802 EYMERTRAQAKE--------------------------KGYVETLDGRRLYLPDIKSSNA 835

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632
                  +               +Q  + DI+   M+         K    +++ VHDE+
Sbjct: 836 ARRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDEL 886

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E    D  + S  ++ LM ++      +PL  E    + +
Sbjct: 887 VFEVHKDDLDSVSKTIHELMENSMK--LDVPLLVEVGSGENW 926


>gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341]
 gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341]
          Length = 938

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 205/703 (29%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
             D ET S   +             ++  +F   +         HD +          + 
Sbjct: 362 AFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVI 411

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+ +   V  N  ++ +V+     +++   R   T++ +              
Sbjct: 412 AQLKPLLEDENKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 469

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++   +   +Y   D  VT  + +
Sbjct: 470 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQ 519

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+++ 
Sbjct: 520 RISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKA 579

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 580 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 638

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 639 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 697

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 698 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 732

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 733 LDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GLIYGMS 778

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 779 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 808

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      +                             +    GR L   ++ +   
Sbjct: 809 QYMEDTRSRAAE--------------------------QGYVETIFGRRLHLPEITSRNG 842

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 843 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDE 893

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL A+      +
Sbjct: 894 LVFEVEESSLSEIEIKVQELMESAAELA--VPLVADAGHGDNW 934


>gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
 gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107]
          Length = 937

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 104/707 (14%), Positives = 197/707 (27%), Gaps = 169/707 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
               D ET S              +  ++  +   +        C HD            
Sbjct: 360 EFSFDTETTSLD----------VMEARIVGVSVATEPGVAAYIPCGHDYMGAPEQLSLEW 409

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109
           +   LK  LE+     +  N  ++R+VL     + +   ++  T++ +           +
Sbjct: 410 VLNQLKPLLEDEHKIKIGQNIKYDRSVLLNY-GITLRGIKY-DTMLESYVWNSVASRHNM 467

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +       K    +EL               +    ++      G Y   D  +T 
Sbjct: 468 DDLAQTY--LDYKTVTFEEL----------AGKGVKQLTFNQLKIEDAGHYAAEDADITL 515

Query: 170 EIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + +   P   ++             L  +   I   G  VD  L    +  +     +L
Sbjct: 516 RLHQFFWPQLQQQSGLCKVFREIEMPLVPVLSHIERNGALVDAKLLGQHSIELGERMVQL 575

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274
           +++   L      +    ++L   LF +  L +   T     +T + VL       P   
Sbjct: 576 ERKAYELAGQ-EFNLSSPKQLGVILFEQLQLPVIKKTPTGTPSTAEEVLQELALDYPLPK 634

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +   R   ++      + L   +N   GR+        A+ TGR S      QN+P  +
Sbjct: 635 VIMEYR-AMAKLKSTYTDKLPLMINPATGRIHTNYHQAVAA-TGRLSSQDPNLQNIPIKT 692

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   IA  G KLV AD + IE R++A ++
Sbjct: 693 DEGRR-------------------------IRQAFIAPAGYKLVAADYSQIELRIMAHLS 727

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L AFE G D++  T A  F VA   VT + R   K +                  
Sbjct: 728 SDSGLLSAFEKGLDVHRATAAEVFGVALDSVTPEMRRSAKAINFG--------------L 773

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++    A  +                                     ++    + ++
Sbjct: 774 IYGMSAFGLAKQLH------------------------------VGRNEAQQYIDRYFER 803

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V    N +     +                             +    GR L   D+
Sbjct: 804 YPGVQRYMNNIRAQAHE--------------------------QGYVETLFGRRLYLPDI 837

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
                          R            +Q  + DI+   M+              +++ 
Sbjct: 838 NAKN---KNFQLAAERTAINAP------MQGTAADIIKTAMIAVDNWLVEAGLDAKLIMQ 888

Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E  ++        +   M++       +PL  +      +
Sbjct: 889 VHDELVLEVAESCLDEVCTGVVARMSAAAR--LNVPLIVDAGVGNNW 933


>gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
 gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC
           12472]
          Length = 928

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 97/706 (13%), Positives = 189/706 (26%), Gaps = 166/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             +  D ET S   +             ++  +F  +          H            
Sbjct: 351 KVVSFDTETTSLDPM----------QARIVGVSFSVEAGHAAYLPLEHHYAGAPQQLPLE 400

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                LK  LE+        N  ++  VL     + +       +++ +          +
Sbjct: 401 AALAKLKPWLEDASKKKCGQNLKYDCHVLANH-GIALAGIA-DDSMLASYVLESHQRHNM 458

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             +             G+  ++     E       +          +   Y   D  +T 
Sbjct: 459 DDLARRH--------LGENTVSY----EEICGKGAKQIGFSEVDVDIAANYAAEDADITL 506

Query: 170 EIFKRLEPLSSKEQELW---------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + +        + E            +   +   G  +D       +  +  +  +L+Q
Sbjct: 507 RLNQFFAGQLFGDLEKVYRDIELPVAEVLFKMERHGVLIDRDKLAAQSHQLGSQMLELEQ 566

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHL------EDLTETTCQRVLSSNKKLTPQAI 274
               L      +    ++L+  LF +  +             +T + VL       P   
Sbjct: 567 RAYELAGQP-FNLNSPKQLQEILFGKLAIPTKGVKKTPSGGYSTDESVLEQLALDHPLPK 625

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +   R   ++      + L   +        T      + TGR +      QN+P  + 
Sbjct: 626 CILEYR-GLAKLKSTYTDKLPTLIYPQTGRVHTTYAQAVAITGRLASNDPNLQNIPVRTA 684

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR   IA  G ++V AD + IE R++A ++ 
Sbjct: 685 EGRR-------------------------VREAFIAPAGWQIVSADYSQIELRIMAHLSD 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  LKAF +GED++  T A  F V  A VT DQR   K +   L               
Sbjct: 720 DEGMLKAFASGEDIHRATAAEVFGVELAAVTSDQRRAAKAINFGLI-------------- 765

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    A  +                                  +A ++    +  ++
Sbjct: 766 YGMSAFGLAAQLDIE------------------------------RSAAQQYIDRYFMRY 795

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V+E      +   +                             +    GR L   D+ 
Sbjct: 796 PGVAEYMQATREKARE--------------------------QGYVETVFGRRLYLPDIK 829

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
            +            R            +Q  + D++   M+              +++ V
Sbjct: 830 LSNPGRR---AGAERAAINAP------MQGTAADLIKLAMIAVQDWLERDGLQSKLIMQV 880

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E P  +       L  +M         +PL AE      +
Sbjct: 881 HDELVLEVPQAELEQVKRRLPEIMAGAAE--LKVPLLAEVGAGDSW 924


>gi|328545870|ref|YP_004305979.1| DNA polymerase I [polymorphum gilvum SL003B-26A1]
 gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1]
          Length = 994

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 103/715 (14%), Positives = 200/715 (27%), Gaps = 175/715 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51
           +  D ET S            A    ++  +              H              
Sbjct: 406 VAFDTETTSLD----------AMQAELVGVSLATAPGKACYVPLAHVDGEGDLLGGGGLV 455

Query: 52  -------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                      VL+  LE+  V  +A N  ++  V+       + I  +  T++L+    
Sbjct: 456 EGQIPLAEALDVLRPMLEDAGVLKIAQNLKYDWLVMARY---GVEIAPYDDTMLLSYVLD 512

Query: 105 LPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E              L       +             +        Y 
Sbjct: 513 AGKGGNGMDELAER------------WLDHTPIPFKEVAGSGKAMVTFDKVPIDKATAYA 560

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P            + E+ +  +   +  RG  VD  +   L+   
Sbjct: 561 AEDADVTLRLWRVLKPRLVAERMATVYETLERPMVPVLARMERRGISVDRQMLSRLSGDF 620

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                 L+ E+ +L      +    ++L   LF + GL     T+    +T   VL    
Sbjct: 621 AQGMAALEAEIHALAG-ESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSVSVLDDLA 679

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +         + S+      + L   ++ + +   T   L ++ TGR S      Q
Sbjct: 680 AEGHELPSKIVAWRQLSKLKSTYSDALPSYIHPETKRVHTSYSLASTTTGRLSSSEPNLQ 739

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R   +A +G+KL+ AD + IE R
Sbjct: 740 NIPVRTEEGRK-------------------------IRKAFVADKGRKLISADYSQIELR 774

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA MA      +AF  G D++  T +  F V    +    R   K +   +        
Sbjct: 775 VLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGI-------- 826

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A                                            
Sbjct: 827 ------IYGISAFGLAAQ------------------------------LGLSRGEAGDYI 850

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           K + ++   + +    + +                                 +    GR 
Sbjct: 851 KTYFERFPGIRDYMEAIKKEVHT--------------------------KGYVTTVFGRK 884

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY----- 622
             Y DV  +     +      R            +Q  + DI+   M+    A       
Sbjct: 885 AHYPDVNTSNP---SLRAFYERAAINAP------IQGSAADIIRRAMVRMDAALAAAKLD 935

Query: 623 -DIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
            +++L VHDE++ E P+        ++  +M +   P+    +PL+ +   +  +
Sbjct: 936 AEMLLQVHDELIFEVPEDQVEATIPVVRRVMETATEPALTLSVPLQVDARAADNW 990


>gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127]
 gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127]
          Length = 930

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 102/705 (14%), Positives = 213/705 (30%), Gaps = 165/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 354 KLIAVDTETDSLDYIS----------ANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN ++  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 627

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 688 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +                   
Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------GLI 768

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  + +        ++    + Q++
Sbjct: 769 YGMS------------------------------AFGLSRQLGISRADAQKYMNLYFQRY 798

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +   ++ +  +                              +    GR L   D+ 
Sbjct: 799 PSVQQFMTDIREKAK--------------------------AQGYVETLFGRRLYLPDIN 832

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
           ++ +      +   R            +Q  + DI+   M+   +        ++++ VH
Sbjct: 833 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVH 883

Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E   +   F    +   M S       +PL  E    + +
Sbjct: 884 DELVFEVRSEKVAFFREQIKQHMESAAELV--VPLIVEVGVGQNW 926


>gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
 gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831]
          Length = 1060

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/730 (15%), Positives = 201/730 (27%), Gaps = 188/730 (25%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
             + +D ET S            A    ++  +              H             
Sbjct: 458  VIAVDTETDSLD----------AHRAGLVGVSLAVATGRACYIPLAHVQAAKVQADATDL 507

Query: 51   -----------PVMP---------QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
                         +P           LK  LEN  V  V  N  ++  VL       I +
Sbjct: 508  FGEGAAPSDVVEPVPGQIPLKEAVARLKPLLENPGVLKVGQNLKYDWVVLARY---GIEV 564

Query: 91   HRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
              +  T++++           +  +             G + I                 
Sbjct: 565  APFDDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----SDVAGTGRNKV 612

Query: 148  PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGY 197
               R A      Y   D  VT  +++ ++P    E            L  +   +  RG 
Sbjct: 613  TFDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVAVYETLERPLLPVIARMEQRGI 672

Query: 198  CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
             VD  +   L+        +L++E++        S    +++   LF + GL     T +
Sbjct: 673  RVDREMLSRLSGDFSQILVRLEEEIQEDAG-EKFSVGSPKQIGDILFGKMGLPGAKKTPS 731

Query: 258  ----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
                T   +L    +   +  +      + S+      + L    + +     T   L A
Sbjct: 732  GQWATPATLLEELAQAGHELPKKILEWRQLSKLKSTYTDALQAHADRETARVHTSFSLAA 791

Query: 314  SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
            + TGR S      QN+P  +                              +R   +A+ G
Sbjct: 792  TTTGRLSSSEPNLQNIPIRTEEGRR-------------------------IRRAFVAAPG 826

Query: 374  KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             +L+ AD + IE R+LA MA      KAFE G D++  T +  F V   ++T D R   K
Sbjct: 827  NRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAATASAMFGVPLKEMTPDLRRRAK 886

Query: 434  VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
             +                    G++                                  A
Sbjct: 887  TINF--------------GIIYGIS------------------------------AFGLA 902

Query: 494  IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                          K + ++   + +    +    +   + G                  
Sbjct: 903  DRLGIGREEASAFIKQYFEQFPGIRDY---IETTKKSCRDKGYVTTL------------- 946

Query: 554  DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                       GR   Y  + +N      +     R+           +Q  + DI+   
Sbjct: 947  ----------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGSAADIIRRA 987

Query: 614  MMNATKAGY------DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWA--KGLPLK 664
            M     A         ++L VHDE+V E  + +      ++  +M   P+ A    +PL 
Sbjct: 988  MTRMEAALAAKKLNARMLLQVHDELVFEVAEDEVERTIPIIRGVMEEAPAPALTLKVPLV 1047

Query: 665  AEGYESKRYR 674
             E   +  ++
Sbjct: 1048 VEANAAGNWQ 1057


>gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v]
          Length = 605

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 30  AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 79

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 80  ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 137

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 138 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 185

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 246 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 305 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 363

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 364 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 398

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 399 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 444

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 445 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 474

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 475 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 508

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 509 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 559

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D       ++ LM +       +PL  E    + +
Sbjct: 560 ELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 957

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 108/731 (14%), Positives = 217/731 (29%), Gaps = 192/731 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET +   ++            ++  +FG  +         H   +        
Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LEN DV  +  N  ++ T+        
Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 462

Query: 88  IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           + +      T++ + +        +  + +           G + I      E       
Sbjct: 463 VQVAGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193
                 + A  +  +Y   D  VT ++ + L P               E  L  +   I 
Sbjct: 511 NQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIE 570

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D       +  ++   ++L+Q + S     V +    ++L+  LF + GL +  
Sbjct: 571 RNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 629

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308
            T     +T + VL           ++       S+      + L   +N   GR+  + 
Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY 689

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P  +                              +R   
Sbjct: 690 HQAV-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAF 723

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA +G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +Q
Sbjct: 724 IARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ 783

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +   L                G++    ++                        
Sbjct: 784 RRSAKAINFGLI--------------YGMSEFGLSNQ----------------------- 806

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          ++  + + Q++  V +   ++ ++                     
Sbjct: 807 -------LGISRADAKKYMELYFQRYPAVQQFMTDIRESA-------------------- 839

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                      +    GR L   ++ ++ +      +   R            +Q  + D
Sbjct: 840 ------SKKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAAD 884

Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662
           I+   M+   KA        +++ VHDE+V E  +      + ++   M         +P
Sbjct: 885 IIKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVP 942

Query: 663 LKAEGYESKRY 673
           L AE      +
Sbjct: 943 LIAEVGVGDNW 953


>gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
 gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393]
          Length = 950

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 98/705 (13%), Positives = 203/705 (28%), Gaps = 165/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----------HDP 51
             + +D ET     ++            ++  +F  ++                      
Sbjct: 374 KLIAVDTETDGLDYMS----------ANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKS 423

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                LK  LEN ++  V  N  F+ T+      +++       T++L+ +        +
Sbjct: 424 TALAALKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIE-FDTMLLSYTLDSTGRHNM 481

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G + I      E            ++      GEY   D  VT 
Sbjct: 482 DDLAKRY--------LGHQTIGF----EDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTM 529

Query: 170 EIFKRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L      +  L  L Q            +   G  +D       +  +    T L
Sbjct: 530 KLQQVLWGKLQSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERLTAL 589

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           + +   L      +    ++L+  LF + GL           +T + VL           
Sbjct: 590 EMQAHELAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEDVLEELAYSHELPK 648

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R   S+      + L + +N       T      + TGR S      QN+P  + 
Sbjct: 649 VLVEHR-GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 707

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA +G K++ AD + IE R++A ++ 
Sbjct: 708 EGRR-------------------------IRQAFIARDGYKIIAADYSQIELRIMAHLSN 742

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + AF  G+D++ +T A  F +   QVT +QR   K +                   
Sbjct: 743 DAGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINF--------------GLI 788

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    +                                        +R    + Q++
Sbjct: 789 YGMSSFGLSRQ------------------------------LGISRADAQRYMDLYFQRY 818

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V    +++ +  +                              +    GR L   ++ 
Sbjct: 819 PGVQTFMHDIREKAK--------------------------AQGYVETLFGRRLYLPEIN 852

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
           ++ +      +   R            +Q  + DI+   M+   +         +++ VH
Sbjct: 853 SSNAMRR---KGAERVAINAP------MQGTAADIIKCAMIKLDEITRDDPDIHMIMQVH 903

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E           ++   M +       +PL  +    + +
Sbjct: 904 DELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 946


>gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
 gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a]
          Length = 763

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 238/767 (31%), Positives = 343/767 (44%), Gaps = 96/767 (12%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQ 55
           M     LF+D ET S +DL K G   YAE     +++  +  D+  V+ WDC   P MP+
Sbjct: 1   MKDFERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPTMPR 60

Query: 56  VLKEALENTDVTI---VAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            L++AL          V  N   F+R V++  + +D+P+ +   T+++A  + LP +L  
Sbjct: 61  ELRKALRRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAFRHALPGSLDM 120

Query: 112 VGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVT 168
             + L + ++  K + GK LI RFCK         R  +  H E W  F  Y   D+   
Sbjct: 121 QCQVLGVDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAM 180

Query: 169 REIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           RE++ R+    +  +E     +DQ INDRG+ VDV LA    + V   + +L +E     
Sbjct: 181 REVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQAHKEELKEEAWERF 240

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G ++ +  L  L+    L     + +  ++T   +L        +   +   R+ AS +
Sbjct: 241 GGKLTGNDFLPALRD---LAPAFTIHNAQKSTLNDLLED-PDFPDEGKVLIEMRLGASST 296

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           A  K N LV  +++DGR RG LQ+ GA RT RW+G  F PQNL R   S +   +I    
Sbjct: 297 ASTKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRRE 356

Query: 347 PTSITSD----------------------PDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             S  +                        D  ++ +  VR C+I ++GKK VVAD + +
Sbjct: 357 GESDVAFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNV 416

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA---QVTKDQRAIGKVMELALGY 441
           E R LAW+AGE+  L  F+ G D+Y  T  + F + P       KD R IGK  EL LGY
Sbjct: 417 EGRGLAWIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKANRKDLRQIGKACELGLGY 476

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM------------QENH 489
            GG  AF + A   GL+L   A ++K       W  A+    +             +++ 
Sbjct: 477 GGGVAAFLQFAKNLGLDLYAMAEVMKGTFPDHIWAAAKRGYEYARINEAKRPPKPGKKDE 536

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
               I    +   C+ +K+ WR+ H +    W EL  A    I N            P  
Sbjct: 537 RPTYILPKNVWLTCDAIKRMWRESHPKTVAFWAELEDAVLCAIRNPGKAYWAGANVRPDG 596

Query: 550 YMKKD----------------------KNNLILMLPSGRSLVYRDVGNNRS--------- 578
                                         L + LPSGR + Y  +  + +         
Sbjct: 597 KKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEIDEDTGK 656

Query: 579 ----------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                       N TTRQ   +YTYGGKLTENIVQA+ RDILA  M     AGY+IVL+V
Sbjct: 657 KRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGYEIVLSV 716

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           HDE++ E PDTD++    L  LM   P WAKG PL AEG    RYRK
Sbjct: 717 HDELITEVPDTDDYTTEELCALMCDLPVWAKGFPLAAEGDIMYRYRK 763


>gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
 gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546]
          Length = 931

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/706 (14%), Positives = 202/706 (28%), Gaps = 164/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET S   +             ++  +F   +         HD           
Sbjct: 352 DVFAFDTETDSLDYMV----------ANLVGLSFATQEGVAAYVPVAHDYLDAPQQLDRD 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110
            + + LK  LE+     V  N  ++ +VL    ++++   +   T++ +           
Sbjct: 402 WVLEQLKPILEDDTQAKVGQNLKYDASVLARY-DIELKGIK-HDTMLASYVYNSVGGKHD 459

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               AL+                   E       +    ++        Y   D  VT  
Sbjct: 460 MDSLALRFLQHS----------CISFEQIAGKGKKQLTFNQIELDEASPYAAEDADVTLR 509

Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  RL     +++            L  +   I   G  +D       +Q +     +L+
Sbjct: 510 LHNRLMENIDQDEKLKAIYQDIEVPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLDELE 569

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275
           Q+   +      +    ++L+  LF + GL         T +T + VL       P    
Sbjct: 570 QKAYEI-AEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKL 628

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++      + L + +NS+     T      + TGR S      QN+P  +  
Sbjct: 629 ILEYR-GLAKLKSTYTDKLPKMINSETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 687

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G K++  D + IE R++A ++G+
Sbjct: 688 GRR-------------------------IRQAFVAPHGYKIMAVDYSQIELRIMAHLSGD 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           Q  L AF+ G+D++  T A        QV+ +QR   K +                    
Sbjct: 723 QALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GLIY 768

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     + +++ 
Sbjct: 769 GMS------------------------------AFGLAKQLGIPRGEAQDYMNKYFERYP 798

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +   +   A  +                             +    GR L   ++ +
Sbjct: 799 GVMQYMEDTRSAAAE--------------------------QGYVETIFGRRLHLPEIKS 832

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTV 628
                    +   R            +Q  + DI+ + M+               +++ V
Sbjct: 833 RNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQAEGDGRVKLLMQV 883

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E  ++        +  LM S    A  +PL AE      +
Sbjct: 884 HDELVFEVQESALTEIESKVQELMESAAELA--VPLVAEAGHGDNW 927


>gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 928

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC]
 gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC]
          Length = 921

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 208/705 (29%), Gaps = 167/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
            ID ET S  +L             ++  +F  +          HD            + 
Sbjct: 348 AIDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVL 397

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
             LK  LE+     +  +  ++R V      +++  +    T++ +    +  P  L ++
Sbjct: 398 ARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHGLASL 455

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E           G+  I+     E       +  P  +        Y   D   T ++ 
Sbjct: 456 AERH--------TGRTGISY----EDLCGKGAKQIPFSQVPVDKAAAYSCEDSDQTLDVH 503

Query: 173 KRLEPLSSKEQE----------LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           + L P    +++                 I   G  +D       +  +     +L+QE 
Sbjct: 504 RVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQEA 563

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L    F + G+ +   T     +T + VL    +  P   ++  
Sbjct: 564 YDIAGQP-FNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 622

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L +  +   GR+        A  TGR S      QN+P  +    
Sbjct: 623 HR-SLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTPEGR 680

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   +A  G+ +   D + IE R++A ++G++ 
Sbjct: 681 R-------------------------VREAFVAPPGRVIASCDYSQIELRIMAHISGDEA 715

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L+AF  G D++  T A  F VA  QVT +QR                          G+
Sbjct: 716 LLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYA--------------KVINFGLIYGM 761

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A       TA +     + Q++  V
Sbjct: 762 S------------------------------SYGLAKNLGIDNTAAKNYIDRYFQRYPGV 791

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +   +     +                              +    GR L   ++ +  
Sbjct: 792 WQYMQDTKAQAK--------------------------ARGYVETVFGRRLYLPEINSPN 825

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
               +      R            +Q  + D++ + M+    A         +++ VHDE
Sbjct: 826 GPRRSA---AERAAINAP------MQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHDE 876

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +V E P+ D     + +  +M         +PL AE      + K
Sbjct: 877 LVFELPEGDVDWLRAEVPRIMAGVAE--LKVPLLAEVGVGPDWDK 919


>gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121]
 gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121]
          Length = 925

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 97/701 (13%), Positives = 204/701 (29%), Gaps = 162/701 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
             D ET S   +             ++ F+   +          HD            + 
Sbjct: 351 AFDTETTSLNYMA----------AELVGFSVSVEAGKAAYIPVAHDYEGAPEQLDRDWVL 400

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + +K  LE+     V  +  ++  VL    ++++       T++ +      +       
Sbjct: 401 EQIKPVLEDASQLKVGQHLKYDANVLANY-DIELKGIE-FDTMLESYIFNSTAN------ 452

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + + K L  +    E       + K  ++        Y   D  +T  + + 
Sbjct: 453 --RHDMDSLAK-KFLSHKSVSFEEIAGKGAKQKTFNQIELEQAAFYAAEDADITFRLHQA 509

Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +                 E  L  +   +   G  +D  L H  +  +     +L+ +  
Sbjct: 510 IWAKLEKTPELVSIFKEIELPLVPVLAKMEQTGALIDPDLLHEQSSEIATRLEELEIKAH 569

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+  LF++  L           +T + +L           ++   
Sbjct: 570 EMAGQA-FNLSSPKQLQEILFVKLELPILKKTPKGQPSTAEPILQELALDYELP-RIIME 627

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               S+      + L E +   GR+  +      + TGR S      QN+P  +      
Sbjct: 628 HRSLSKLKSTYTDKLPEMIQKTGRIHTSYHQAV-TATGRLSSTDPNLQNIPIRTAEGRR- 685

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA EG KL+ AD + IE R+++ ++ +   L
Sbjct: 686 ------------------------IRQAFIAPEGYKLIAADYSQIELRIMSHLSQDPGLL 721

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF   +D++  T A  F VA  +VT +QR   K +                    G++ 
Sbjct: 722 EAFANNKDVHKATAAEVFEVALDEVTGEQRRRAKAIN--------------FGLIYGMS- 766

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        ++  + + +++  V  
Sbjct: 767 -----------------------------AFGLAKQLGIGRPEAQKYIQRYFERYPGVRT 797

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +   +                             +    GR L   D+  + + 
Sbjct: 798 YMENTREMARE--------------------------KGYVETLFGRRLYLPDIKASNAM 831

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
           +        R            +Q  + DI+   M+              ++L VHDE++
Sbjct: 832 MRQA---AERTAINAP------MQGTAADIIKRAMIEMHAWLKDTDLDIKMILQVHDELI 882

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  ++D   A   +  +M +    A  +PL  E      +
Sbjct: 883 FEVKESDLSAAQEKILDIMENTS--AIDVPLLVEAGIGDTW 921


>gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
 gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58]
          Length = 998

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 104/727 (14%), Positives = 213/727 (29%), Gaps = 186/727 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHP--------VELWDCVHD--- 50
            +  D ET S   +             ++ F+    D+                 H    
Sbjct: 398 VVAFDTETTSLDPM----------QAELVGFSLAIADNGKDASGTDIRAAYVPLTHKTGS 447

Query: 51  ------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
                                 + LK+ LE+  V  VA N  ++  ++K      + +  
Sbjct: 448 GGDLFSDGIKLAEGQAPFAEALERLKDLLEDEAVLKVAQNLKYDYLLMKRH---GVVMRS 504

Query: 93  WICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           +  T++++           +  + E           G   IA     +        +   
Sbjct: 505 FDDTMLISYVLEAGKTTHGMDTLSERW--------LGHTPIAY----KDVTGSGKSSITF 552

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCV 199
                     Y   D  VT  ++  L+P              E+ L  +   + +RG  V
Sbjct: 553 DFVNIDKATAYAAEDADVTLRLWMALKPRLVSERLTKVYERLERPLVPVLAHMEERGITV 612

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256
           D  +   L+  +  +    ++E+  L      +    ++L   LF   GL     T+   
Sbjct: 613 DRQILSRLSGELAQKAASFEEEIYELAG-ERFNIGSPKQLGDILFGRMGLPGGSKTKTGQ 671

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T  +VL        +  +   +  + ++      + L   ++ + +   T   L ++ 
Sbjct: 672 WSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPETKRVHTSYALASTT 731

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  +    +                         +R+  I++ G K
Sbjct: 732 TGRLSSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHK 766

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE RVLA +A       AFE G D++  T +  F V    +  + R   K +
Sbjct: 767 LLSADYSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAI 826

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    A+ +                             
Sbjct: 827 NF--------------GIIYGISAFGLANQLSIA-------------------------- 846

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                +      K + ++   + +          +                         
Sbjct: 847 ----RSEAGDYIKKYFERFPGIRDYMEATKAFARE------------------------- 877

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
            N  +    GR   Y ++ ++     +      R            +Q  + DI+   M+
Sbjct: 878 -NGYVETIFGRRAHYPEIRSSNP---SVKAFNERAAINAP------IQGSAADIIRRAMI 927

Query: 616 NA------TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAE 666
                    K    ++L VHDE++ E  + + E    ++  +M     P+ +  +PLK +
Sbjct: 928 RIEPALEAEKLSARMLLQVHDELIFEVEEAEIEKTLPVVVSVMEDAAMPAISMRVPLKVD 987

Query: 667 GYESKRY 673
              +  +
Sbjct: 988 ARAADNW 994


>gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74]
          Length = 605

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 30  AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 79

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 80  ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 137

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 138 LAER------------WLKHKTITFEEIAGKGKNPLTFNQIALEEAGRYAAEDADVTLQL 185

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 246 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 305 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 363

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 364 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 398

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 399 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 444

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 445 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 474

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 475 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 508

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 509 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 559

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 560 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I
 gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5'
           exonuclease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 928

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3]
 gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3]
          Length = 995

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/727 (14%), Positives = 212/727 (29%), Gaps = 186/727 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHP--------VELWDCVHD--- 50
            +  D ET S   +             ++ F+    D+                 H    
Sbjct: 395 VVAFDTETTSLDPM----------QAELVGFSLAIADNGKDASGTDIRAAYVPLTHKTGS 444

Query: 51  ------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
                                   LK+ LE+  V  +A N  ++  ++K      + +  
Sbjct: 445 GGDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDYLLMKRH---GVVMQS 501

Query: 93  WICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           +  T++++           +  + E           G   IA     +        +   
Sbjct: 502 FDDTMLISYVLEAGKTTHGMDTLSERW--------LGHTPIAY----KDVAGSGKSSITF 549

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCV 199
                     Y   D  VT  ++  L+P              E+ L  +   + +RG  V
Sbjct: 550 DFVDIDKATAYAAEDADVTLRLWMVLKPRLAAERLTSVYERLERPLVPVLAHMEERGITV 609

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256
           D  +   L+  +  +    ++E+  L      +    ++L   LF   GL     T+   
Sbjct: 610 DRQILSRLSGELAQKAAAFEEEVYQLAG-ERFNIGSPKQLGDILFGRMGLPGGSKTKTGQ 668

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T  +VL        +  +   +  + ++      + L   ++   +   T   L ++ 
Sbjct: 669 WSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYALASTT 728

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  +    +                         +R+  I++ G K
Sbjct: 729 TGRLSSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHK 763

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE RVLA +A       AFE G D++  T +  F V    +  + R   K +
Sbjct: 764 LLSADYSQIELRVLAHVADIPQLRSAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAI 823

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    A+ +                             
Sbjct: 824 NF--------------GIIYGISAFGLANQLSIA-------------------------- 843

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                +      K + ++   + +          +                         
Sbjct: 844 ----RSEAGEYIKKYFERFPGIRDYMEATKAFARE------------------------- 874

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
            N  +    GR   Y ++ ++   +        R            +Q  + DI+   M+
Sbjct: 875 -NGYVETIFGRRAHYPEIRSSNPSMK---AFNERAAINAP------IQGSAADIIRRAMV 924

Query: 616 NAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAE 666
                    K    ++L VHDE++ E  + + E    ++  +M +   P+ +  +PLK +
Sbjct: 925 RIEPVLEAEKLSARMLLQVHDELIFEVEEGEIEKTLPIVVSVMENAAMPAISMRVPLKVD 984

Query: 667 GYESKRY 673
              +  +
Sbjct: 985 ARAADNW 991


>gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 928

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619]
 gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619]
          Length = 915

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 106/702 (15%), Positives = 196/702 (27%), Gaps = 160/702 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S            A+   ++  +F  + H        HD            + 
Sbjct: 337 AFDTETTSLD----------AQKAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVL 386

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK  L++     V  N+ ++  +L      + +    +  T++ +      +      
Sbjct: 387 LALKPLLQDPAKEKVGQNAKYDINILANGSPAIQMQGVAY-DTMLESYVLNSTAT----- 440

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     + + K L       E       +    ++      G Y   D  +T  + +
Sbjct: 441 ---RHDMDSLAQ-KYLDHATIAFEDIAGKGAKQLTFNQIHLDKAGPYAAEDADITLRLHQ 496

Query: 174 RLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQEL 222
            L+   ++   +  +   I              G  VD AL    +  + V+   L++  
Sbjct: 497 ALQARLAQTPSVLPVLMDIEMPLVPVLAKIERQGALVDAALLQIQSGELGVKMADLERRA 556

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L + L+ + G+ +   T     +T + VL    +      +V  
Sbjct: 557 YELAG-EEFNLGSPKQLGSILYDKLGMPVLSKTAKGQPSTAEAVLDELAEQGYPLPEVLM 615

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                S+      + L   +N       T      + TGR S      QN+P  +     
Sbjct: 616 QYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRR 675

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G KL+ AD + IE R++A +A ++  
Sbjct: 676 -------------------------IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF    D++  T A  F VA   VT DQR   K +                    G++
Sbjct: 711 LHAFRNNLDVHRATAAEVFGVALEAVTTDQRRSAKAINF--------------GLIYGMS 756

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A  +                                     +     +  ++  V 
Sbjct: 757 AFGLAKQI------------------------------GVDRKQSQDYIDRYFARYPGVL 786

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                      +                             +    GR L   D+     
Sbjct: 787 AYMERTRAQAAE--------------------------QGFVETLFGRRLYLPDINAKNP 820

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632
            L    +   R            +Q  + DI+   M+N             ++L VHDE+
Sbjct: 821 ALR---KGAERTAINAP------MQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDEL 871

Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E  +         +   M+        +PL  E      +
Sbjct: 872 VLEVREDLVDQVKDEIRGQMSKAAQ--LDVPLLVEVGVGSNW 911


>gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 928

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180]
 gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180]
          Length = 911

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/704 (14%), Positives = 202/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET +            A    ++  +F  +          H             + 
Sbjct: 336 AFDTETTALD----------AMQAELVGVSFALEPGRAAYVPLAHVYPGAPDQLDRDRVL 385

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP--SALKA 111
             LK  LE+     V  N  ++ +VL      DI +      TL+ +          L +
Sbjct: 386 ARLKPLLEDPGRPKVGQNLKYDMSVLARY---DIALRGIAHDTLLESYVLDSTARHDLDS 442

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +             + I      E       +     +      G Y   D  VT  +
Sbjct: 443 LAKRF--------LDHDTIRF----EDVAGKGAKQIGFDQVPLEQAGPYAAEDAEVTLRL 490

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +  +P               E  L  +   +   G  +D A   T +  +  +  +L++
Sbjct: 491 HRVFQPRLAAVPALERLYREIEMPLVPVLSRLERAGVLIDSARLATQSAELARKILELEE 550

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
               +      +    +++    F E GL           +T + VL        +  ++
Sbjct: 551 SAYRVAGRR-FNLGSPKQIGAIFFDELGLPVVAKTPKGAPSTSEDVLERLAAEGHELPRI 609

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +    S+      + L   ++ D     T      + TGR S      QN+P  +   
Sbjct: 610 ILDHRGLSKLRSTYTDKLPRMVDRDTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEG 669

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA+ G +L+ AD + IE R++A ++G++
Sbjct: 670 RR-------------------------IRRAFIAASGHRLLAADYSQIELRIMAHLSGDE 704

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A    +AP  VT +QR   K +                    G
Sbjct: 705 RLLAAFAGGQDIHRATAAEILGLAPEDVTGEQRRSAKAIN--------------FGLIYG 750

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +      A +     + +++  
Sbjct: 751 MS------------------------------AFGLARQLGIERGAAQEYVDRYFERYPG 780

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +  +   +   +                          +  +    GR L   ++G+ 
Sbjct: 781 VRDFMDRTRRQVRE--------------------------DGYVETLFGRRLHLPEIGHG 814

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              ++L VHD
Sbjct: 815 NQARRAAAERT---------AINAPMQGTAADIIKRAMIAVDAWIEAEQPAARLILQVHD 865

Query: 631 EIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E  ++  E   + +   M +    A  +PL  +  E   +
Sbjct: 866 ELVLEVAESAVEETRARVCAAMETAAELA--VPLVVDIGEGANW 907


>gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 928

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 928

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 928

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193]
 gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193]
          Length = 935

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 96/715 (13%), Positives = 196/715 (27%), Gaps = 177/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + ID ET     +             ++  +   +          H             
Sbjct: 350 YVAIDTETTGLDAMVV----------DLVGVSLCVEPGTACYIPLTHKQGGDDLFGGEGL 399

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                      ++LK  LE+  V  +  N  ++  +L       I +     T++++ + 
Sbjct: 400 AEGQMPLEQALEMLKPMLEDPAVLKIGQNMKYDAKILHRY---GIDVAPIDDTMLMSYAL 456

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E       K    K L+                    R        Y
Sbjct: 457 HAGEHNHGMDILSERY--LDHKPIPIKPLL----------GTGKSAITFDRVPIADAVPY 504

Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  +++  +P   + Q           L  +   +   G  VD      ++  
Sbjct: 505 AAEDADITLRLWQHFKPELHQRQVTVVYETLERPLVPVLAEMERNGIKVDRDTLSRMSNA 564

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +   L+ E+ +L      +    ++L   LF +  L      +T    T   +L   
Sbjct: 565 FAQKMAALEDEIHALAGQP-FNVGSPKQLGEILFDKLELPGGKKGKTGAYATGADILEDL 623

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325
                    V + R   S+      + L + +N D GR+  +    GA+ TGR +     
Sbjct: 624 ATEHALPALVLDWRQ-LSKLKSTYTDALQDHINPDTGRVHTSYIQTGAN-TGRMASSDPN 681

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +  +G  L+  D + IE
Sbjct: 682 LQNIPVRSEEGRR-------------------------IREAFVPEQGNVLLSLDYSQIE 716

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +AG      AF  G+D++  T +  F+V   ++T D R   K +          
Sbjct: 717 LRILAHVAGIDALKAAFAAGQDIHAMTASEMFDVPMEEMTADIRRQAKAIN--------- 767

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 768 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 792

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    +   +  ++                          +  +    G
Sbjct: 793 FIDRYFERFPGIRAYMDRTVEFAKE--------------------------HGYVQTLFG 826

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621
           R +   ++    +          R            +Q  + D++   M+          
Sbjct: 827 RKIHTPEI----AAKGPRAGFAKRAAINAP------IQGTAADVIRRAMVKMPPAIAHLP 876

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+   E        +M +   P+    + L  +      +
Sbjct: 877 ARMLLQVHDELLFEVPEAAVEETIETARRVMENAADPALHLDVKLSVDAGRGNNW 931


>gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
 gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131]
          Length = 937

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/715 (14%), Positives = 196/715 (27%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + ID ET S  ++             ++  +   +          H             
Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400

Query: 51  --PVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
               MP      +LK  LE+  +  +  N  ++  +L       I +     T++++ + 
Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + +       K    K L+                    R        Y
Sbjct: 458 HAGRHGHGMDELCDTY--LGHKPIAIKTLL----------GSGKSQITFDRVPVEQAVCY 505

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  ++K  +P   +          E+ L  +   +   G  VD      ++  
Sbjct: 506 AAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNA 565

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
              +   L+ E+ +L  G   +    ++L   LF + GL      +     T   VL   
Sbjct: 566 FAQKMAGLEAEIHALAGGP-FNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDL 624

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325
                       +  + S+      + L E ++ + GR+  +    GA+ TGR +     
Sbjct: 625 AAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPN 683

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A  GK LV  D + IE
Sbjct: 684 LQNIPVRSEEGRR-------------------------IREAFVAPPGKLLVSLDYSQIE 718

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AF  G D++  T +  FNV    +    R   K +          
Sbjct: 719 LRILAHIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN--------- 769

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 770 -----FGVIYGIS------------------------------GFGLARNLRIPRADAQG 794

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    +E     +                           N  +    G
Sbjct: 795 FIDRYFERFPGIRGYMDETIAFAK--------------------------ANGHVETLFG 828

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621
           R +   ++               R            +Q  + D++   M+   KA     
Sbjct: 829 RRINTPEINAK----GPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMP 878

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E  +         +  +M     P+    +PL  E      +
Sbjct: 879 ATMLLQVHDELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933


>gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
 gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029]
          Length = 937

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/715 (14%), Positives = 196/715 (27%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + ID ET S  ++             ++  +   +          H             
Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400

Query: 51  --PVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
               MP      +LK  LE+  +  +  N  ++  +L       I +     T++++ + 
Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + +       K    K L+                    R        Y
Sbjct: 458 HAGRHGHGMDELCDTY--LGHKPIAIKTLL----------GSGKSQITFDRVPVEQAVCY 505

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  ++K  +P   +          E+ L  +   +   G  VD      ++  
Sbjct: 506 AAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNA 565

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
              +   L+ E+ +L  G   +    ++L   LF + GL      +     T   VL   
Sbjct: 566 FAQKMAGLEAEIHALAGGP-FNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDL 624

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325
                       +  + S+      + L E ++ + GR+  +    GA+ TGR +     
Sbjct: 625 AAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPN 683

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A  GK LV  D + IE
Sbjct: 684 LQNIPVRSEEGRR-------------------------IREAFVAPPGKLLVSLDYSQIE 718

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AF  G D++  T +  FNV    +    R   K +          
Sbjct: 719 LRILAHIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN--------- 769

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 770 -----FGVIYGIS------------------------------GFGLARNLRIPRADAQG 794

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    +E     +                           N  +    G
Sbjct: 795 FIDRYFERFPGIRGYMDETISFAK--------------------------ANGHVETLFG 828

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621
           R +   ++               R            +Q  + D++   M+   KA     
Sbjct: 829 RRINTPEINAK----GPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMP 878

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E  +         +  +M     P+    +PL  E      +
Sbjct: 879 ATMLLQVHDELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933


>gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
 gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6]
          Length = 936

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 95/714 (13%), Positives = 199/714 (27%), Gaps = 175/714 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    ++             ++  +   +          H             
Sbjct: 351 YVAVDTETTGLDEMVV----------DLVGISLCVEPGEACYIPLTHKVGGDDLFGGEGL 400

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                      ++LK  LE+  +  +  N  ++  +L         +     T++++ + 
Sbjct: 401 AEGQMPLDQALEMLKPVLEDPAILKIGQNMKYDAKILHRY---GADVAPIDDTMLMSYAL 457

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E       K    K L+                    R        Y
Sbjct: 458 HAGLHGHGMDTLSERY--LDHKPIPIKPLL----------GSGKSAITFDRVPIANAVPY 505

Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  +++  +P   +EQ           L  +   +   G  VD  +   ++  
Sbjct: 506 AAEDADITLRLWQLFKPQLHQEQVTTVYETLERPLVPVLAQMERHGIKVDREVLSRMSNA 565

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +   L+ E+  +      +    ++L   LF +  L      +T    T   +L   
Sbjct: 566 FAQKMAGLESEIHEMAGAD-FNVGSPKQLGEILFDKLELPGGKKGKTGAYATGADILEDL 624

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                    V + R   S+      + L + +N++ R   T      + TGR +      
Sbjct: 625 ATEHALPGLVLDWRQ-LSKLKSTYTDALQDHINAETRRVHTSYAQTGASTGRMASTDPNL 683

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +                              +R   +A EG  L+  D + IE 
Sbjct: 684 QNIPVRTEEGRR-------------------------IREAFVAGEGNVLLSLDYSQIEL 718

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA MAG     +AF  G+D++  T +  F+V  A++T D R   K +           
Sbjct: 719 RILAHMAGIDALKQAFAEGQDIHAMTASEMFDVPMAEMTPDIRRQAKAIN---------- 768

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A          +  
Sbjct: 769 ----FGVIYGIS------------------------------GFGLARNLRIPRKEAQDF 794

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + Q+   +    +   +  ++                          +  +    GR
Sbjct: 795 IDRYFQRFPGIRRYMDSTVEFAKE--------------------------HGFVQTLFGR 828

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622
            +   ++               R            +Q  + D++   M+           
Sbjct: 829 KIHTAEINAK----GPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPGAIAHLPA 878

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E P+   E   ++   +M     P+    + L  E  + + +
Sbjct: 879 RMLLQVHDELLFEVPEAAVEETIAVAKEVMEGAANPAVHLDVKLLVEAGQGQNW 932


>gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 928

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKSGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
 gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
 gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
          Length = 937

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 105/710 (14%), Positives = 192/710 (27%), Gaps = 169/710 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------- 50
             + ID ET S   +             ++  +              H            
Sbjct: 355 DLVCIDTETTSIDPML----------AQLVGISLSVKPGEACYIPVAHRGPDVAGFDAAA 404

Query: 51  ----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL 105
                 +   +K  LE+     V  +  ++  V       DI +      T++ +     
Sbjct: 405 QLSRDTVLARMKLWLEDESRKKVGQHLKYDAHVFANH---DIALRGIEHDTMLESYVLES 461

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                    A ++   K    +                               EY   D 
Sbjct: 462 HRNHGMDALAERVLHLKTITYEA----------VCGKGASQIGFDEVPLDRATEYAAEDA 511

Query: 166 TVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
            VT  + + L P               E     + Q +   G  +D       +  + + 
Sbjct: 512 DVTLRLHRTLFPKVAEDDKLRYVYEQIEMPASIVLQKMERNGVLIDADRLAKQSNELGLR 571

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLT 270
              L+ E   L      +    +++    F +  L +   T     +T + VL    +  
Sbjct: 572 LIDLEAEAHKLAGQP-FNLSSPKQIGDIFFNQMKLPVIKKTASGAPSTDEEVLQKLAEDY 630

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    + + R   ++      + L + +N       T      + TGR +      QN+P
Sbjct: 631 PLPKLLLDYR-GLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATAVTGRLASTDPNLQNIP 689

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
             +                              +R   IA EG  +V AD + IE R++A
Sbjct: 690 VRTEEGRR-------------------------IREAFIAPEGSVIVSADYSQIELRIMA 724

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ ++  ++AF  G+D++  T A  FNV P +VT DQR + KV+               
Sbjct: 725 HLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINF------------- 771

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G++                                  A        A +     +
Sbjct: 772 -GLIYGMS------------------------------AFGLASNLGIGRDAAKLYIDRY 800

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
             ++   +   +E  Q   +                             +    GR L  
Sbjct: 801 FARYPGAASYMDETRQRARE--------------------------QGYVETVFGRRLWL 834

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624
            D+               R            +Q  + D++   M+              +
Sbjct: 835 PDINGGNGPRRQA---AERAAINAP------MQGTAADLIKLSMLAVQGWLDAEAMRSRL 885

Query: 625 VLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V+ VHDE+V E P  +       L  LM S  +    +PL AE      +
Sbjct: 886 VMQVHDELVLEVPQDELAVVRERLPELMCSVAT--LRVPLVAEVGVGANW 933


>gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601]
 gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601]
          Length = 921

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 208/705 (29%), Gaps = 167/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
            ID ET S  +L             ++  +F  +          HD            + 
Sbjct: 348 AIDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVL 397

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
             LK  LE+     +  +  ++R V      +++  +    T++ +    +  P  L ++
Sbjct: 398 ARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHGLASL 455

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E           G+  I+     E       +  P  +        Y   D   T ++ 
Sbjct: 456 AERH--------TGRTGISY----EDLCGKGAKQIPFSQVPVDKAAAYSCEDSDQTLDVH 503

Query: 173 KRLEPLSSKEQE----------LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           + L P    +++                 I   G  +D       +  +     +L+QE 
Sbjct: 504 RVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQEA 563

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L    F + G+ +   T     +T + VL    +  P   ++  
Sbjct: 564 YDIAGQP-FNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 622

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L +  +   GR+        A  TGR S      QN+P  +    
Sbjct: 623 HR-SLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTPEGR 680

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   +A  G+ +   D + IE R++A ++G++ 
Sbjct: 681 R-------------------------VREAFVAPPGRVIASCDYSQIELRIMAHISGDEA 715

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L+AF  G D++  T A  F VA  QVT +QR                          G+
Sbjct: 716 LLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYA--------------KVINFGLIYGM 761

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A       TA +     + Q++  V
Sbjct: 762 S------------------------------SYGLAKNLGIDNTAAKNYIDRYFQRYPGV 791

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +   +     +                              +    GR L   ++ +  
Sbjct: 792 WQYMQDTKAQAK--------------------------ARGYVETVFGRRLYLPEINSPN 825

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
               +      R            +Q  + D++ + M+    A         +++ VHDE
Sbjct: 826 GPRRSA---AERAAINAP------MQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHDE 876

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +V E P+ D     + +  +M         +PL AE      + K
Sbjct: 877 LVFELPEGDVNWLRAEVPRIMAGVAE--LKVPLLAEVGVGPDWDK 919


>gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
 gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325]
          Length = 930

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 98/705 (13%), Positives = 204/705 (28%), Gaps = 165/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + +D ET +   ++            ++  +F  ++         H+           
Sbjct: 354 KLIAVDTETDNLDYMS----------ANLVGISFALENGEAAYLPLRHNYIGAPQQIDFD 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                LK  LEN  +  V  N  ++ ++      +++    +  T++L+          +
Sbjct: 404 TALSRLKPILENPVIEKVGQNIKYDLSIFARN-GINVQGVTY-DTMLLSYVLDSTGRHNM 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G + I+     E             +        Y   D  +T 
Sbjct: 462 DDLAKRY--------LGHQTISF----EEIAGKGKGQLTFDQIPLEHATTYAAEDADITM 509

Query: 170 EIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L               + E  L  +   +   G  +D     T +  +    T L
Sbjct: 510 KLQQVLWEKVSEQPTLVKLYRTMELPLLSVLSRMERNGVLIDSNTLLTQSNKIAERLTAL 569

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274
           +Q+   L      +    ++L+  LF + GL +   T     +T + VL           
Sbjct: 570 EQQAYELAGQT-FNLASTKQLQEILFDKLGLPVLKKTPKGAPSTNEEVLEELAYDHELPK 628

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R   S+      + L + +N       T      + TGR S      QN+P  + 
Sbjct: 629 LLVEHR-GLSKLKSTYTDKLPQMINKHTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   I  EG  +V AD + IE R++A ++ 
Sbjct: 688 EGRR-------------------------IRQAFIPREGFTMVAADYSQIELRIMAHLSK 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F +   QVT +QR   K +                   
Sbjct: 723 DQGLINAFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINF--------------GLI 768

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    +                                        ++    + Q++
Sbjct: 769 YGMSSFGLSRQ------------------------------LGIPRNDAQKYMDLYFQRY 798

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V     ++ +  +                              +     R L   D+ 
Sbjct: 799 PGVQTFMTDIRETAK--------------------------AQGYVATLFDRRLYLPDIN 832

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
           ++ +      +   R            +Q  + DI+   M++  K         +++ VH
Sbjct: 833 SSNAIRR---KAAERVAINAP------MQGTAADIIKRAMIDLDKQIVGNPDIQMIMQVH 883

Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E         S  +   M         +PL  +    + +
Sbjct: 884 DELVFEVRSEKVEEFSQLIKQTMEKAAQLV--VPLIVDVGVGQNW 926


>gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 928

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 207/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D       ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLDAVSKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
 gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1]
          Length = 937

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/715 (14%), Positives = 196/715 (27%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + ID ET S  ++             ++  +   +          H             
Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400

Query: 51  --PVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
               MP      +LK  LE+  +  +  N  ++  +L       I +     T++++ + 
Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + +       K    K L+                    R        Y
Sbjct: 458 HAGRHGHGMDELCDTY--LGHKPIAIKTLL----------GSGKSQITFDRVPVEQAVCY 505

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  ++K  +P   +          E+ L  +   +   G  VD      ++  
Sbjct: 506 AAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNA 565

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
              +   L+ E+ +L  G   +    ++L   LF + GL      +     T   VL   
Sbjct: 566 FAQKMAGLEAEIHALAGGP-FNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDL 624

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325
                       +  + S+      + L E ++ + GR+  +    GA+ TGR +     
Sbjct: 625 AAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPN 683

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A  GK LV  D + IE
Sbjct: 684 LQNIPVRSEEGRR-------------------------IREAFVAPPGKLLVSLDYSQIE 718

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AF  G D++  T +  FNV    +    R   K +          
Sbjct: 719 LRILAHIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN--------- 769

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 770 -----FGVIYGIS------------------------------GFGLARNLRIPRADAQG 794

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    +E     +                           N  +    G
Sbjct: 795 FIDRYFERFPGIRGYMDETIAFAK--------------------------ANGHVETLFG 828

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621
           R +   ++               R            +Q  + D++   M+   KA     
Sbjct: 829 RRINTPEINAK----GPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMP 878

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E  +         +  +M     P+    +PL  E      +
Sbjct: 879 ATMLLQVHDELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933


>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
 gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
          Length = 938

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 101/719 (14%), Positives = 192/719 (26%), Gaps = 179/719 (24%)

Query: 1   MATL------FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---- 50
           M  +       ID ET S   +             ++  +   +          H     
Sbjct: 349 MRRIEAAPLVAIDTETTSLDPM----------QAQLVGISLSVEPGVACYIPVAHRGPDV 398

Query: 51  -----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
                        +   ++  LE+     +  N  ++  V      + +       T++ 
Sbjct: 399 AGLPDHGQLSREFVLGRMRAWLEDASRPKLGQNLKYDVHVFANH-GVKLRGVA-HDTMLQ 456

Query: 100 ARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           +          + ++ E L            L  +    E             +      
Sbjct: 457 SYVLASHRNHGMDSLAERL------------LSLKTITYEEVCGKGASQIGFDQIDLARA 504

Query: 158 GEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHT 206
            EY   D  VT  + +++ P               E  +  + Q +   G  +D      
Sbjct: 505 TEYAAEDADVTLRLHRKMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAA 564

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRV 262
            +  +      L+Q           +    +++   LF +  L +   T     +T + V
Sbjct: 565 QSAELGQRMLALEQAAYEAAGQP-FNLGSPKQIGEILFSQMKLPVVKKTASGAPSTDEEV 623

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321
           L    +  P    + + R   ++      + L + +N   GR+  +     A  TGR + 
Sbjct: 624 LQKLAEDYPLPKLLLDYR-GLAKLKSTYTDKLPKMVNPQTGRVHTSYGQATA-VTGRLAS 681

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+P  +                              +R   IA  G  +V AD 
Sbjct: 682 TEPNLQNIPVRTEEGRR-------------------------IREAFIAEPGSVIVSADY 716

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R++A ++G++  L+AF  GED++  T    F V    V+ +QR            
Sbjct: 717 SQIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREAVSSEQRRYA--------- 767

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         G++                                  A        
Sbjct: 768 -----KVINFGLIYGMS------------------------------AFGLAGNLGIERE 792

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
           A +     +  ++  V+    E  Q   +                             + 
Sbjct: 793 AAKHYIDRYFMRYPGVAHYMEETRQTARE--------------------------QGYVE 826

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---- 617
              GR L   D+               R            +Q  + D++   M+      
Sbjct: 827 TVFGRRLWLPDINGGSGPRRQA---AERAAINAP------MQGTAADLIKLSMIAVQGWL 877

Query: 618 --TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                    ++ VHDE+V E P+ +       L  LM S       +PL AE      +
Sbjct: 878 ERDGLQTRQIMQVHDELVLEVPEHELELVKVRLPELMCSVAQ--LRVPLVAEVGSGANW 934


>gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039]
          Length = 921

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 205/700 (29%), Gaps = 159/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D ET S   L          +  ++  +F             ++    Q +  A 
Sbjct: 349 RIVSLDTETTSLNAL----------EAELVGLSFSVSPQEAFYVPIPNEQQKAQKIVNAF 398

Query: 62  ----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
               EN ++  V  N  ++  VL+    + +       T++            +  + E 
Sbjct: 399 QPLYENEEIEKVGQNIKYDIEVLRNY-GITMK-GPLFDTMIAHYLLQPELRHNMDDMAET 456

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 K     +LI                      A     +Y   D  +T ++    
Sbjct: 457 Y--LRYKTIHIDQLIG---------AKGKDQLNMRSLAPEQIVDYACEDADITLQLKNIF 505

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L Y+   +   G  +DV     +++  + + +  +Q++  L
Sbjct: 506 EPKLKEAGLYPLFKEVEMPLIYVLAEMECNGVKLDVQALSEVSKTFNEQLSLYEQKIYEL 565

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++ T LF +  +      T+T    T +  L       P   ++   R
Sbjct: 566 AG-ETFNISSPKQVGTILFEKLKVAEKPKKTKTGQYVTSEEELQKLINKHPIIDEILKYR 624

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L + +N       T      + TGR S      QN+P      +E  
Sbjct: 625 -GLKKLLSTYVDALPKLVNPKTGNIHTSFNQATTATGRLSSSDPNLQNIPVRGEDGKE-- 681

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R C I +EG     AD + IE R++A ++G++  ++
Sbjct: 682 -----------------------IRKCFIPNEGCLFFSADYSQIELRIMAHLSGDENMIE 718

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T A+ +     +VT+D+R   K     +                G+ + 
Sbjct: 719 AFIEGHDIHAATAAKIYKKPIDEVTRDERTKAKRANFGII--------------YGITVF 764

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  +                                     +++ + +     +V   
Sbjct: 765 GLAERLNIE------------------------------RNEAKQLIEGYFSTFPQVQAY 794

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             +  +  +Q                          N  +     R     D+ +  +  
Sbjct: 795 MEQCKETAKQ--------------------------NGYVETFMHRRRYLADINSQNA-- 826

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
            T      R            +Q  + DI+   M+   +          ++L VHDE+  
Sbjct: 827 -TVRGYAERNAINAP------IQGSAADIIKLAMVRIYERFNNEGIKSKMILQVHDELNF 879

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                ++     +    M +   +A  +PL A+      +
Sbjct: 880 SVLPNEKEQVEKIVLEEMQNA--FALKVPLIADAGWGANW 917


>gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
 gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
          Length = 915

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 206/705 (29%), Gaps = 168/705 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + ID ET S   +             ++  +F  +          H             +
Sbjct: 340 VAIDTETDSLEPMK----------ARIVGISFAVEPGRGAYVPLAHAGPDAPEQLPLDAV 389

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111
              LK  LE+     +  N  ++R V      + +   R   T++ +       P +L++
Sbjct: 390 LARLKPWLEDASRAKLGQNLKYDRHVFANA-GIALAGVR-HDTMLESYVLEAHKPHSLES 447

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E          P  +       EY   D  +   +
Sbjct: 448 LAERH------------LGRKGLSYEDLCGKGVNQIPFAQVDVARATEYSAEDSEMALHV 495

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  +  +   I   G  VD       ++ +      L+Q
Sbjct: 496 HQVLWPEIEADAGLRRVYEAIEMPVAEVLARIERHGVLVDPQELARQSRDLAERMVALEQ 555

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQV 276
           E+ ++      +    +++   LF + GL ++  T     +T + VL+      P   ++
Sbjct: 556 EVYAIAEQP-FNLGSPKQIGEILFGKLGLPVKKRTASGAPSTDEDVLTELAADYPLPARI 614

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
             +R   ++      + L   +N   GR+        A  TGR +      QN+P  +  
Sbjct: 615 LEHR-SLAKLKGTYTDKLPAMVNPATGRVHTNYAQAVA-VTGRLASNEPNLQNIPIRTPE 672

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       VR   +A  G  ++ AD + IE R++A ++ +
Sbjct: 673 GRR-------------------------VRRAFVAPPGHVILSADYSQIELRIMAHISED 707

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L+AF  G D++  T A  F +  A+VT +QR                          
Sbjct: 708 EGLLRAFSEGLDVHRATAAEVFGMPLAEVTSEQRRYA--------------KVINFGLIY 753

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+                                   A        A +     +  + +
Sbjct: 754 GMG------------------------------AYGLAANLGIEQKAAKDYIDRYFARFA 783

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V    +E     ++                             +    GR L   ++ +
Sbjct: 784 GVKRYMDETRVRAKE--------------------------KGYVETVFGRRLWLPEINS 817

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629
                 +      R+           +Q  + D++   M+   K          +V+ VH
Sbjct: 818 GNGPRRS---GAERQAINAP------MQGTAADLIKLAMIAVQKELDASGRATRMVMQVH 868

Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P+ +   A   +  LM      A  +PL AE      +
Sbjct: 869 DELVLEVPEAELDWAKDAIPRLMAGVA--ALKVPLLAEVGVGANW 911


>gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T]
 gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T]
          Length = 939

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 108/708 (15%), Positives = 196/708 (27%), Gaps = 172/708 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------------- 50
             D ET S   +             ++  +F  +          H               
Sbjct: 361 AFDTETTSLDPMA----------ARLVGMSFAVEPGEAAYLPLAHRGAAQLPEAPEQLPL 410

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSA 108
             +   L+   E+     +  N  ++  VL     + +       TL+ +          
Sbjct: 411 DEVLDRLRPWFESDRHAKLGQNLKYDAHVLANH-GIALRGIA-HDTLLESYVLESDKAHD 468

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + ++ +           G   I              +             EY   D  VT
Sbjct: 469 MDSLAKRH--------LGLATIPY----TEVCGKGAKQIGFDEVDVARATEYAAEDADVT 516

Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P               E  +  + Q +   G  +D  L    ++ +      
Sbjct: 517 LRLHQHLCPQLQALPQLEALYRELEMPVLGVLQRMERTGVLIDPFLLGQHSEELGRRLYT 576

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L+ E  +L      +    ++L   LF + GL +   T     +T + VL    +  P  
Sbjct: 577 LEGEAHALAGQP-FNLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLEKLAEDYPLP 635

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +  +R   S+      + L   +N   GR+  +     A  TGR S      QN+P  
Sbjct: 636 KLLLEHR-GLSKLKSTYADKLPRMVNPRTGRVHTSFSQATA-VTGRLSSSEPNLQNIPIR 693

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R+  IA     +V AD + IE R++A +
Sbjct: 694 TPEGRR-------------------------IRAAFIAPRDHLIVSADYSQIELRIMAHL 728

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   L+AF  GED++  T    F VAPA+VT +Q                        
Sbjct: 729 SDDARLLEAFARGEDVHRATAGEVFGVAPAEVTSEQ------------------------ 764

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                                 +    NF      +    A        A +     +  
Sbjct: 765 --------------------RRYAKVINFGLIYGMSAHGLAKNLGIERAAAQAWIDRYFA 804

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V+E  +       +                             +    GR L   D
Sbjct: 805 RYPGVAEYMDRTRAEARE--------------------------QGYVETVFGRRLYLPD 838

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVL 626
           +  +++          R            +Q  + D++ + M+              +VL
Sbjct: 839 IRASQAGRR---AGAERAAINAP------MQGTAADLIKKAMIATDAWLASCGLKSKLVL 889

Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE+V E P  +       L  LM    +    +PL  E      +
Sbjct: 890 QVHDELVLEVPGAELETVREELPRLMGGVAT--LKVPLLVEVGAGDNW 935


>gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168]
 gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168]
          Length = 928

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 207/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++T            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIT----------ANLVGLSFAVEPGVAAYVPVAHDYLDAPDQIARDRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V+ V  N  ++R +L     +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVSKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+Q+  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVMIDPAVLHKHSEEITLRLAELEQKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  +   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIPPKDHVIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLETVTNEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++   
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNGA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+         +    +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDGWLESEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D       ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLDVVSKKIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA]
 gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400]
          Length = 891

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 104/705 (14%), Positives = 198/705 (28%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
            +D ET S   L          +  ++  +  F DH        H             + 
Sbjct: 315 SVDLETTSLNPL----------EADIVGISLSFRDHEACYIPVGHAYDGAPAQLDRTLVL 364

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           + L+  L +  V  V  N  ++  VL+    + +    W  T+V +           L +
Sbjct: 365 EGLRPLLTDPAVRKVGQNLKYDYQVLRRH-GIVMA-GVWCDTMVASYLINPVRSGHGLDS 422

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                +I+     E             R        Y   D      +
Sbjct: 423 LAVEH--------LDHRMISY----EEVAGKGKDQLNFARVPVEKASTYSCEDADAAWLL 470

Query: 172 FKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            +   P              E  L  +   +   G  +D+AL   L+  +  + T L+++
Sbjct: 471 HRLFLPRVAEAGMERLFFDLEMPLVPILAEMETAGVKLDLALLGELSAGLGSQLTALEEQ 530

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276
           + +L      +    ++L   LF +  L     T+     +T    L    +   +    
Sbjct: 531 VMAL-APEPFNLNSPKQLGEVLFEKMKLPAGKKTKTKTGWSTNVEELERLAEAGHEIAAA 589

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                  ++      + L   ++   GR+  +      + TGR S      QN+P  +  
Sbjct: 590 ILRYRGLAKLKSTYTDALPRLVHPASGRVHTSYNQ-TVTNTGRLSSSEPNLQNIPVRTDE 648

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             +                         +R   IA EG  ++ AD + IE RVLA ++ +
Sbjct: 649 GRK-------------------------IRRAFIAEEGHLILSADYSQIELRVLAHLSED 683

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +    AF   ED++  T A  F + P  VT + R                          
Sbjct: 684 RVFCDAFARDEDIHTRTAAEVFGLFPEMVTPEMRRQA----------------------- 720

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                 A NF     +     A +        +     +  +H 
Sbjct: 721 ---------------------KAINFGVIYGQGAFSLAKQLGITTKVAKEFIDNYFARHP 759

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                 +       +    G                             GR L   D+ +
Sbjct: 760 GARAFLDGC---VAEAEARGYVTTL-----------------------MGRRLPIPDIAS 793

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVH 629
           +   +    ++               +Q  + DI+   M+  T+          +++ VH
Sbjct: 794 SNGNIRAFAQRN---------AVNYPIQGSAADIIKAAMVRVTERMRREGLTSRLIMQVH 844

Query: 630 DEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P+ +      L    M         +PL+A+    + +
Sbjct: 845 DELVFEVPEGERTAMERLVQHEMEHAAP--LRVPLRADVNVGRNW 887


>gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
 gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b]
          Length = 938

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 96/715 (13%), Positives = 200/715 (27%), Gaps = 178/715 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51
           + +D ET S  ++             ++  +   +          H              
Sbjct: 353 VAVDTETTSLNEM----------QAALVGISLAVEPGRACYIPLRHTEGASGDLFSSDAL 402

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                    +   LK  LE+  +  +  N  ++  +        I +  +  T++++ + 
Sbjct: 403 AEGQLDLDAVLGALKPMLEDDAILKIGQNMKYDAKIFARH---GIRVAPFDDTMLMSYAL 459

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E     S +    KEL+                    R       +Y
Sbjct: 460 NAGIHGHGMDTLSERY--LSHQPIPIKELL----------GTGKSAVTFDRVPVADAVKY 507

Query: 161 CKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  ++   +P   +E          + L  +   +   G  VD      ++  
Sbjct: 508 AAEDADITLRLWHVFKPQLHREKVTTVYETLERPLSPVLAQMERNGIKVDRETLSRMSGK 567

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +  +L++E+  L      +    ++L   LF E GL      +T    T   VL   
Sbjct: 568 FAQKMAQLEEEIHELAGRK-FNVGSPKQLGEILFDEMGLDGGKRGKTGAYATGADVLEDL 626

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325
                   +V  +    S+      + L + ++ D GR+  +    GA+ TGR +     
Sbjct: 627 ATEHDLPARVL-DWRALSKLKSTYTDALQDHIDPDTGRVHTSYVQTGAT-TGRLASTDPN 684

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A  G  LV  D + IE
Sbjct: 685 LQNIPVRSEEGRR-------------------------IREAFVAEPGNVLVSLDYSQIE 719

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AF  G+D++  T +  F+V   ++T + R   K +          
Sbjct: 720 LRILAHIADIDALRQAFRDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAIN--------- 770

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 771 -----FGVIYGIS------------------------------GFGLARNLRIPRGEAQG 795

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    ++     ++                          +  +     
Sbjct: 796 FIDRYFERFPGIKTYMDKTVDFAKE--------------------------HGFVQTLFN 829

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621
           R +   ++    S          R            +Q  + DI+   M+          
Sbjct: 830 RKIHTPEI----SAKGPRAGFARRAAINAP------IQGTAADIIRRAMIRMPAAIEGMP 879

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAK--GLPLKAEGYESKRY 673
             ++L VHDE++ E          +    +M +    A    +PL  +  +   +
Sbjct: 880 AKMLLQVHDELIFEVEAGAADALIATARDVMEAAADPAVKIDVPLVVDAGQGANW 934


>gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197]
 gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617]
 gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197]
 gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617]
          Length = 928

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 204/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T + +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTRLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELER 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLSDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + DI+   M+              +++ VHD
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHD 882

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 883 ELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924


>gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
 gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946]
          Length = 929

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 108/706 (15%), Positives = 207/706 (29%), Gaps = 170/706 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L+            +I  +F             HD            + 
Sbjct: 353 AFDLETDSLDTLS----------ANIIGISFATAPGEAAYLPVAHDYLDAPEQLDRSDVL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110
             LK  LE+     V  N  F+R VLK     DI +      T++ + +         + 
Sbjct: 403 ARLKPLLEDPQSQKVGQNLKFDRGVLKRY---DIELLGIRFDTMLESYALNSVAGRHDMD 459

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +                L  +    E            ++ A      Y   D  VT +
Sbjct: 460 TLASR------------WLQHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQ 507

Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  ++ P   KEQ            L  +   I   G  +D ++    +Q +     +L+
Sbjct: 508 LHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLAELE 567

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
            +   L      +    ++L+T LF + G+     T     +T + VL+      P    
Sbjct: 568 LKAHELAG-EPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKV 626

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R   ++      + L   +N       T      + TGR S      QN+P  +  
Sbjct: 627 ILEHR-GLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDE 685

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G +++ AD + IE R++A ++ +
Sbjct: 686 GRR-------------------------IRQAFIAPQGHRILAADYSQIELRIMAHLSQD 720

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF + +D++  T A  F VA  +V+ +QR   K +                    
Sbjct: 721 KGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINF--------------GLIY 766

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  + +        ++    + +++ 
Sbjct: 767 GMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFERYP 796

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +      +   Q                             +    GR L   D+  
Sbjct: 797 GVLQYMESTRELAAQ--------------------------KGYVSTLDGRRLYLPDINA 830

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTV 628
           + +      +   R            +Q  + DI+   M+               +++ V
Sbjct: 831 SNAMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQV 881

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E        A + +  LM  +      +PL+ +      +
Sbjct: 882 HDELVFEVQADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 925


>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
 gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
          Length = 937

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 104/710 (14%), Positives = 193/710 (27%), Gaps = 169/710 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------- 50
             + ID ET S   +             ++  +              H            
Sbjct: 355 DLVCIDTETTSIDPML----------AQLVGISLSVKPGEACYIPVAHRGPDVAGLDAAA 404

Query: 51  ----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL 105
                 +   +K  LE+     V  +  ++  V       DI +      T++ +     
Sbjct: 405 QLSRDTVLARMKLWLEDESRKKVGQHLKYDAHVFANH---DIALRGIEHDTMLESYVLES 461

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                    A ++   K    +                                Y   D 
Sbjct: 462 HRNHGMDALAERVLHLKTITYEA----------VCGKGASQIGFDEVPLDRATAYAAEDA 511

Query: 166 TVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
            VT  + + L P               E     + Q +   G  +D       +  + + 
Sbjct: 512 DVTLRLHRTLFPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDADRLAKQSNELGLR 571

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLT 270
             +L+ E   L      +    +++    F +  L +   T     +T + VL    +  
Sbjct: 572 LIELEAEAHKLAGQP-FNLGSPKQIGDIFFNQMKLPVIKKTASGAPSTDEEVLQKLAEDY 630

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    + + R   ++      + L + +N       T      + TGR +      QN+P
Sbjct: 631 PLPKLLLDYR-GLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATAVTGRLASTDPNLQNIP 689

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
             +                              +R   IA EG  +V AD + IE R++A
Sbjct: 690 VRTEEGRR-------------------------IREAFIAPEGSVIVSADYSQIELRIMA 724

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ ++  ++AF  G+D++  T A  FNV P +VT DQR + KV+               
Sbjct: 725 HLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINF------------- 771

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G++                                  A        A +     +
Sbjct: 772 -GLIYGMS------------------------------AFGLASNLGIGRDAAKLYIDRY 800

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
             ++   +    E  Q+  +                          +  +    GR L  
Sbjct: 801 FARYPGAANYMEETRQSARE--------------------------HGYVETVFGRRLWL 834

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624
            D+               R            +Q  + D++   M+              +
Sbjct: 835 PDINGGNGPRRQA---AERAAINAP------MQGTAADLIKLSMLAVQGWLEAEAMRSRL 885

Query: 625 VLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V+ VHDE+V E P  +       L  LM S  +    +PL AE      +
Sbjct: 886 VMQVHDELVLEVPQDELAVVRERLPELMCSVAT--LRVPLVAEVGVGANW 933


>gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 928

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLNAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
 gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150]
          Length = 931

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 95/716 (13%), Positives = 201/716 (28%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52
            + +D ET S  ++             ++  +   +         +H             
Sbjct: 345 HVAVDTETTSLNEMR----------AELVGISLCVEAGIACYIPLIHKAAASDDLFGSAD 394

Query: 53  ----------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                     +  +LK  LE+  V  +  N  ++  +        + +  +  T++++ +
Sbjct: 395 LAEGQLDTNVVLDLLKPVLEDPAVLKIGQNMKYDAKIFARY---GVKVAPFDDTMLMSYA 451

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   ++ ++ E           G   I+     +T            +       +
Sbjct: 452 QNAGKHNHSMDSLSERY--------LGHSPISI----KTLLGTGKSAITFDKVPVADAVK 499

Query: 160 YCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  VT  +++ L PL             E+ L  +   +   G  VD      ++ 
Sbjct: 500 YAAEDADVTLRLWQFLGPLLHIEKVTKVYERMERPLVPVLAEMEMHGIKVDRDTLSRMSN 559

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265
               +   L+ E+         +    ++L   LF +  L      +    +T   +L  
Sbjct: 560 AFAQKMAGLEAEIHEKAGQS-FNVGSPKQLGEILFDKLELPGGKKGKTGAYSTGADILED 618

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVF 324
                     V + R   S+      + L + +N   GR+  +    GA+ TGR +    
Sbjct: 619 LATEHELPALVLDWRQ-LSKLKSTYTDALQDHINAETGRVHTSYSIAGAN-TGRLASTDP 676

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  S                              +R   +A EG  L+  D + I
Sbjct: 677 NLQNIPIRSEEGRR-------------------------IREAFVAEEGNVLLALDYSQI 711

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA +A      +AF  G D++  T ++ FNV    +    R   K +         
Sbjct: 712 ELRILAHVAKIDALKEAFYNGVDIHALTASQMFNVPLEGMDPMVRRQAKAINF------- 764

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G++                                  A          +
Sbjct: 765 -------GVIYGIS------------------------------GFGLARNLRIPRAEAQ 787

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                + ++   +    +E  +  ++                          +  +    
Sbjct: 788 AFINTYFERFPGIRTYMDETVEFAKE--------------------------HNFVQTLF 821

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA 620
           GR +   D+               R            +Q  + D++   M+         
Sbjct: 822 GRKIHTPDINAK----GPGAGFAKRAAINAP------IQGTAADVIRRAMIRMPAAIKDL 871

Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
              ++L VHDE+V E  +    + +  +  +M +    A    +PL  +  +   +
Sbjct: 872 PAKMLLQVHDELVFEVAEDAVEDVTNAVRKVMENAAEPAIKLTVPLTVDAGQGANW 927


>gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316]
          Length = 930

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 109/702 (15%), Positives = 214/702 (30%), Gaps = 163/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F             HD            + 
Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFATAPGVAAYVPVAHDYLDAPDQIPRDRVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +++K  LE+     V  N  F+R +L+    +++       T++ +        L +V  
Sbjct: 405 ELMKPVLEDDKALKVGQNLKFDRGILQNY-GIELRGIA-FDTMLESYI------LDSVAG 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 457 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K              L  +   I   G  +D  + H  +  +    T+L+Q+  
Sbjct: 514 MWPKLQKHEGPLNVFQHIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLTELEQKAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 ELAG-EPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILQY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   ++      + L   +N   GR+  +     A+ TGR S      QN+P  +     
Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAA-TGRLSSTDPNLQNIPVRNEEGRR 690

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA +   +V AD + IE R++A ++ ++  
Sbjct: 691 -------------------------IRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGL 725

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A  F +    VT +QR   K +                    G++
Sbjct: 726 LTAFAEGQDIHRATAAEVFGLPLESVTNEQRRSAKAINF--------------GLIYGMS 771

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             + +        ++    + +++  V 
Sbjct: 772 ------------------------------AFGLSRQLNIPRKESQKYMDLYFERYPGVL 801

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E         ++                             +    GR L   D+ ++ +
Sbjct: 802 EYMERTRAQAKE--------------------------KGYVETLDGRRLYLPDIKSSNA 835

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632
                  +               +Q  + DI+   M+         K    +++ VHDE+
Sbjct: 836 ARRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDEL 886

Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E    D    S  ++ LM ++ +    +PL  E    + +
Sbjct: 887 VFEVHKDDLEAVSRKIHELMENSMT--LDVPLLVEVGSGENW 926


>gi|332559502|ref|ZP_08413824.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
 gi|332277214|gb|EGJ22529.1| DNA polymerase I [Rhodobacter sphaeroides WS8N]
          Length = 937

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/715 (14%), Positives = 196/715 (27%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + ID ET S  ++             ++  +   +          H             
Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400

Query: 51  --PVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
               MP      +LK  LE+  +  +  N  ++  +L       I +     T++++ + 
Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + +       K    K L+                    R        Y
Sbjct: 458 HAGRHGHGMDELCDTY--LGHKPIAIKTLL----------GSGKSQITFDRVPVEQAVCY 505

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  ++K  +P   +          E+ L  +   +   G  VD      ++  
Sbjct: 506 AAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNA 565

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
              +   L+ E+ +L  G   +    ++L   LF + GL      +     T   VL   
Sbjct: 566 FAQKMAGLEAEIHALAGGP-FNVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDL 624

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325
                       +  + S+      + L E ++ + GR+  +    GA+ TGR +     
Sbjct: 625 AAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPN 683

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A  GK LV  D + IE
Sbjct: 684 LQNIPVRSEEGRR-------------------------IREAFVAPPGKLLVSLDYSQIE 718

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AF  G D++  T +  FNV    +    R   K +          
Sbjct: 719 LRILAHIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN--------- 769

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 770 -----FGVIYGIS------------------------------GFGLARNLRIPRADAQG 794

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    +E     +                           N  +    G
Sbjct: 795 FIDRYFERFPGIRGYMDETIAFAK--------------------------ANGHVETLFG 828

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621
           R +   ++               R            +Q  + D++   M+   KA     
Sbjct: 829 RRINTPEINAK----GPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMP 878

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E  +         +  +M     P+    +PL  E      +
Sbjct: 879 ATMLLQVHDELLFEVEEKAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933


>gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
 gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1]
          Length = 917

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 108/709 (15%), Positives = 193/709 (27%), Gaps = 172/709 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + +D ET S            A D  ++  +F             H              
Sbjct: 336 IALDTETTSLQ----------AHDAELVGLSFATRAGEAWYIPVGHRSTDLLVPAPQQLP 385

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
              +   LK  LE+       HN  ++  VL+    +++       +++LA        P
Sbjct: 386 LQHVLAALKPLLEDAAKRKCGHNLKYDAQVLRRA-GIELAGIA-ADSMLLAYCLYPAKYP 443

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            +L +V E              L               +          +   Y   D  
Sbjct: 444 PSLDSVAEDY------------LNYHCTPYSEVAGKGAKQVCFDEVPVSIATPYACEDAD 491

Query: 167 VTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           +   +   L                E  L  +   I   G  VD  +   L+    +   
Sbjct: 492 IALRLTGLLSAQLLTEGRLTRHDEIELPLSQVLADIEWTGAHVDAEMLAGLSTGFGLRIA 551

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272
           +L+ ++ +       + +  ++L   LF    +     T++    T Q VL         
Sbjct: 552 ELESQIHAAAG-EKFNIQSPKQLGVLLFETLAIPGGKKTKSGQWATGQEVLEKLADEHEV 610

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              +   R   ++      + L + ++ + GR+  +      + TGR S      QN+P 
Sbjct: 611 PRLILQVRQ-LAKLKSTYTDALPKLIHRTTGRVHTSFNQAITT-TGRLSSSDPNLQNIPI 668

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            S    E                         +R   IA EG  L+ AD + IE R++A 
Sbjct: 669 RSAEGRE-------------------------IRKAFIAEEGHTLLAADYSQIELRLMAH 703

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G+     AF  GED++  T A    +A   V+ + R   K +   + Y   A      
Sbjct: 704 FSGDAALCAAFANGEDIHAATAAAVNGIALEDVSGEMRRRAKAINFGILYGMSA-----F 758

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                LN++        ++  E +     F         E    +               
Sbjct: 759 GLAKQLNISRGEAQTFIDTYFERYPSVRGFMDDTLVLAREQGYVETL------------- 805

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                                          R  VP +              +G    Y 
Sbjct: 806 ----------------------------LGHRVYVPEISSS-----------NGMRRAY- 825

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
                            R             Q  + DI+   M++  +          I+
Sbjct: 826 ---------------AERTAINAPL------QGSAADIIKVAMIHLHRRLRQEAPAAAII 864

Query: 626 LTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDE++ E P       S +    M    +    +PL  +      +
Sbjct: 865 LQVHDELIVEAPVDQIDAVSAIMRQTMEQAVT--LEVPLTVDIGSGHSW 911


>gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32]
 gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32]
          Length = 891

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 109/707 (15%), Positives = 197/707 (27%), Gaps = 169/707 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------V 52
              ID ET S              +  ++  +F F DH        H             
Sbjct: 314 IFAIDLETTSLNPF----------EAEIVGISFSFSDHQAYYIPVAHHYLGVPDQLSLAH 363

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109
           + Q L+  L +  +  +  N  ++  VL+    +++    W  T++ +           L
Sbjct: 364 VLQALRPLLLDPAIKKIGQNIKYDYQVLRRA-GIEMEGI-WCDTMLASYLLNPNRSSHGL 421

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            A+   L           ++I+               K   +        Y   D   T 
Sbjct: 422 NALAVEL--------LDHKMISY----ADVAGSGKDQKNFAQVEVEKASIYSCEDADATW 469

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            + K   P   +          E  L  +   +   G  +D+ L   L+     +  +L+
Sbjct: 470 LLHKLFLPQIEESGMERLLFELEMPLVKILAEMELYGVKLDLVLLQKLSAGFGSQLAELE 529

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAI 274
           +E+         +    ++L   LF    L     T+     +T    L           
Sbjct: 530 REIFQCAGTT-FNINSPKQLGEVLFEHLQLPCGKKTKTKTGWSTNVDELERLAAEHEIGR 588

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +   R   S+      + L + + S+ GR+  +      + TGR S      QN+P  S
Sbjct: 589 LILQYR-SLSKLKSTYTDALPKLVYSESGRIHTSYNQAV-TNTGRLSSSEPNLQNIPIRS 646

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   IA EG  ++ AD + IE RVLA ++
Sbjct: 647 EEGR-------------------------SIRHAFIAEEGCLILSADYSQIELRVLAHLS 681

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++    AF   ED++  T A  F + P  VT + R   K +                  
Sbjct: 682 QDRVFCDAFAKDEDIHTRTAAEVFGLFPGMVTPEMRRQAKTIN--------------FGV 727

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G    +                               A E        +     +  +
Sbjct: 728 IYGQGPFSL------------------------------AKELGVSTKVAKEFIDNYFDR 757

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           H+      +       +    G                             GR L   D+
Sbjct: 758 HAGARVFLDGC---VREAEAKGHVTTIL-----------------------GRRLPIPDI 791

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
            +             R            +Q  + DI+ + M+              +++ 
Sbjct: 792 NSTN---GNIRSFAQRNAI------NYPIQGSAADIIKQAMVRVSGRMRREGLKSRLIMQ 842

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E P  ++     L  H M +  +    +PLK +      +
Sbjct: 843 VHDELVFEVPLEEKLTMEKLVCHEMENALT--LRVPLKVDVNFGSNW 887


>gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
 gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196]
          Length = 905

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 199/702 (28%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET     +             ++  +F  + H        H             + 
Sbjct: 331 SLDTETTGLDPMR----------AELVGISFSVEPHHGAYIPLGHRYTGVPRQLPLDFVL 380

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + LK  L +     +  N  F+R V      + +       TL+ +              
Sbjct: 381 EKLKPWLTDPSAPKLGQNLKFDRHVFANH-GIGLKGI-VHDTLLQSYVFESHRPHDMDNL 438

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K     E                      +       +Y   D  VT ++ + 
Sbjct: 439 ALRHLGIKTITYDE----------VTGKGAARIGFEQVDIERAAQYAAEDADVTLQLHQH 488

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L               + E  +  +   +   G  +D+ L  T ++ +  +   L++   
Sbjct: 489 LYAEVGKDAKLDHIYRTLEMPVMDVLFEMERNGVLLDIKLLETQSRELGEKMLALEERAC 548

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           ++   L  +    ++++  LF    L +   T +    T + VL       P A  + + 
Sbjct: 549 TIAG-LPFNLNSPKQIQEILFDRLKLPVMKKTPSGVPSTDEDVLQKLALDYPLARALLDY 607

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   ++      + L   ++   GR+        A  TGR +      QN+P  +     
Sbjct: 608 R-GLAKLKSTYTDKLPRMVHPVTGRVHTNYAQAVA-VTGRLASNEPNLQNIPIRTAEGRR 665

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA  G +++ AD + IE R++A ++ +   
Sbjct: 666 -------------------------IREAFIAPSGYRIISADYSQIELRIMAHISQDAGL 700

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           LKAF  GED++  T +  F V    V  +QR   K++                    G++
Sbjct: 701 LKAFAQGEDIHRATGSEIFGVPLETVNSEQRRYAKIIN--------------FGLIYGMS 746

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A                                      A       +  ++  V+
Sbjct: 747 EFGLATQ------------------------------LGIERAAARTYMDRYFSRYPGVA 776

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +      +   +                          N  +    GR L   ++ ++  
Sbjct: 777 DYMQRTRKTARE--------------------------NRYVETVFGRRLWLSEINSSNG 810

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                     R            +Q  + DI+   M+         +    +V+ VHDE+
Sbjct: 811 MRRQA---AERAAINAP------MQGTAADIIKLAMIEVHDWLRRHELRSKLVMQVHDEL 861

Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E P+ +       L  LM +       +PL  E      +
Sbjct: 862 VLEVPENEIETIKRELPLLMGNVAQ--LQVPLLVEVGVGPNW 901


>gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 919

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 108/731 (14%), Positives = 216/731 (29%), Gaps = 192/731 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET +   ++            ++  +FG  +         H   +        
Sbjct: 318 KLVAVDTETDNLDSMS----------ANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 367

Query: 54  --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LEN DV  +  N  ++ T+        
Sbjct: 368 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH---G 424

Query: 88  IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           + +      T++ + +        +  + +           G + I      E       
Sbjct: 425 VQVEGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 472

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193
                 + A  +  +Y   D  VT ++ + L P               E  L  +   I 
Sbjct: 473 NQLTLDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIE 532

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D       +  ++    +L+Q + S     V +    ++L+  LF + GL +  
Sbjct: 533 RNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAG-EVFNLASTKQLQEILFTKLGLPVLK 591

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308
            T     +T + VL           ++       S+      + L   +N   GR+  + 
Sbjct: 592 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY 651

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P  +                              +R   
Sbjct: 652 HQAV-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAF 685

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA +G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F +A  QVT +Q
Sbjct: 686 IARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQ 745

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +   L                G++    ++                        
Sbjct: 746 RRSAKAINFGLI--------------YGMSEFGLSNQ----------------------- 768

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          ++  + + Q++  V +   ++ ++                     
Sbjct: 769 -------LGISRADAKKYMERYFQRYPAVQQFMTDIRESA-------------------- 801

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                      +    GR L   ++ ++ +      +   R            +Q  + D
Sbjct: 802 ------SEKGYVETLFGRRLYLPEIKSSNAMRR---KAAERVAINAP------MQGTAAD 846

Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662
           I+   M+   KA        +++ VHDE+V E  +      + ++   M         +P
Sbjct: 847 IIKVAMIGIDKAIRGDDNIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVP 904

Query: 663 LKAEGYESKRY 673
           L AE      +
Sbjct: 905 LIAEVGVGDNW 915


>gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454]
 gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
          Length = 927

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 107/703 (15%), Positives = 199/703 (28%), Gaps = 166/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 353 SFDTETTSLDPMR----------ARIVGVSFATEPGRAAYVPLAHRGPDHPVQLPRDEVL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
             LK  LE+     V  +  ++  VL +   + +       TL+ +       P  +  +
Sbjct: 403 ARLKPWLESPAHKKVGQHLKYDAQVLASH-GITLAGIE-HDTLLESYVLESHRPHDMDNL 460

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                           L  +  K E               +  +  EY   D  +T  + 
Sbjct: 461 ATRH------------LGVKTIKYEDVAGKGAAQIGFDEVSVDVATEYSAEDADITLRLH 508

Query: 173 KRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P               E     + Q I   G  +D       +  + +   +L  E
Sbjct: 509 QVLYPQIQVEKGLDYVYRSIELPTARVLQIIERNGVLIDKDRLVAQSNELGIRMLELQAE 568

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
             +L  G   +    +++    F +  L +   T +    T + VL    +  P    + 
Sbjct: 569 AYALAGG-EFNLNSPKQIGEIFFQQLQLPVVKKTPSGAPSTDEDVLQKLAEDYPLPKVLL 627

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           + R   ++      + L + +N D     T      + TGR +      QN+P  +    
Sbjct: 628 DYR-ALTKLKSTYTDKLPKMINPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTPEGR 686

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA  G  +V AD + IE R++A ++G+  
Sbjct: 687 R-------------------------IREAFIAPPGSSIVSADYSQIELRIMAHISGDAS 721

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AFE GED++  T +  F V   +VT +QR I KV+                    G+
Sbjct: 722 LMAAFEHGEDVHRATASEIFGVTRQEVTSEQRRIAKVIN--------------FGLIYGM 767

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A        A +     +  ++  V
Sbjct: 768 S------------------------------AFGLASNLGIARDAAKLYIDRYFARYPGV 797

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +   +E     +                              +    GR L   ++    
Sbjct: 798 ARYMDETRMEAKSC--------------------------GFVQTVFGRRLWLPEINGGN 831

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
                      R            +Q  + D++   M+         +    +++ VHDE
Sbjct: 832 GPRRQA---AERAAINAP------MQGTAADLIKLSMITVQDWIERARVKSRLIMQVHDE 882

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E PD +     + +  LM S       +PL AE      +
Sbjct: 883 LVLEVPDDELEIIRAKVPELMCSVAQ--LNVPLVAELGTGANW 923


>gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 726

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 272/726 (37%), Positives = 366/726 (50%), Gaps = 63/726 (8%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L+ D ET SP+ +   G+  YAE    +LFA+   D PV++WDC     MP+ L  AL 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALH 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
           N  V +  HNS+F+RTVL     ++IP+ RW  ++  A ++ LP AL  + E L++  + 
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K ++GK L+A FCK     C   R  +  H   W  F +Y + DV   R++ KRL   +
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHN 187

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               EL  W+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   +
Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   L    G+ L D+ + T +R L  +  L     ++ + R +AS ++  K   L+  
Sbjct: 248 ALLHHLSTAHGVALPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S   +   I  +          D
Sbjct: 307 TSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDD 366

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE-------------------- 395
            + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE                    
Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTW 426

Query: 396 --------------------QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
                                 + +    GED+Y   YA SF +AP  VTK QR IGKV 
Sbjct: 427 HSGEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFGIAPQAVTKQQRQIGKVQ 486

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
           ELALGY GG  AF   A+   ++L   A        P   ++A    +W + NH      
Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL--PPLLLQEAVEALQWTKANHRPTFGL 544

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609
             L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYE 669
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+E
Sbjct: 660 LAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFE 719

Query: 670 SKRYRK 675
           + RYRK
Sbjct: 720 THRYRK 725


>gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9]
 gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9]
          Length = 937

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 99/708 (13%), Positives = 202/708 (28%), Gaps = 168/708 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             +  D ET S   +T            ++  +F  ++         HD           
Sbjct: 358 DVVAFDTETDSLDYMT----------ANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRD 407

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   LK  LE+     V  N  F+ ++L    ++++   ++  T++ +           
Sbjct: 408 WVLAQLKPLLEDPAQNKVGQNLKFDMSILARY-DINMQGIKY-DTMLESYVFNSVVGRHD 465

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + ++                L  +    E       +    ++    + G Y   D  +T
Sbjct: 466 MDSLALRY------------LEHKNISFEEVAGKGKKQLTFNQIDLDVAGPYAAEDADIT 513

Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             +   L                 E  L  +   I   G  +D  L    +  +     +
Sbjct: 514 LRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLDE 573

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273
           L+ +   +      +    ++L+  LF + GL +   T +    T + VL       P  
Sbjct: 574 LETKAYEI-AEQEFNLSSPKQLQAILFEKMGLPILKKTPSGAPSTNEEVLQELALDYPLP 632

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   R   ++      + L + +N       T      + TGR S      QN+P  +
Sbjct: 633 KILLEYR-GLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRN 691

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   IA  G K++  D + IE R++A ++
Sbjct: 692 AEGRR-------------------------IRQAFIAPTGYKILAVDYSQIELRIMAHLS 726

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  L+AF+ G+D++  T A    +    VT +QR   K +                  
Sbjct: 727 GDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINF--------------GL 772

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++    A  +                                     +     + ++
Sbjct: 773 IYGMSAFGLAKQLDM------------------------------GRNEAQDYMNVYFER 802

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V E                                        +    GR L   D+
Sbjct: 803 YPGVLEYMESTRIHA--------------------------SEQGYVETLFGRRLYLPDI 836

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVL 626
            +         +   R            +Q  + DI+   M+   +           +++
Sbjct: 837 KSRNGIRR---KAAERAAINAP------MQGTAADIIKRAMVLVDEWVEQQETGRVRLLM 887

Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE+V E  +++     + +  LM         +PL A+      +
Sbjct: 888 QVHDELVFEVQESELDAVSADVRRLMELAAE--LDVPLIADTGSGDNW 933


>gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 884

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 309 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 358

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 359 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 410

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 411 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 467

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 468 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 527

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 528 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 586

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 587 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 644

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 645 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 680

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 681 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 725

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 726 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 756

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 757 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 790

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 791 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 841

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 842 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 880


>gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
          Length = 891

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 104/704 (14%), Positives = 200/704 (28%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
             D ET S +               ++  +F             H  +          + 
Sbjct: 318 AFDTETTSLVATR----------ADLVGISFAIKPGEGWYLPVGHRYLGVPEQLDRALVI 367

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             L+  + +T +  +A N+ ++  VL+    L++       T++ +           L  
Sbjct: 368 DKLRPLMADTQLAKIAQNAKYDLLVLRRA-GLEVAGLSC-DTMLASYLANPAAKSHGLDT 425

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +   L         G   I              +              Y   D  +T  +
Sbjct: 426 LASEL--------LGYRTIGY----TEVTGKGKKQIGFEEVEIEKATVYATEDADITLRL 473

Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             +LEP            + E  L  +   +  +G  +D      L+  +      L+ E
Sbjct: 474 ADKLEPQLAETGQGELFRTVELPLVTVLSDMEWQGVRIDADFLKGLSADMKTRLATLEGE 533

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           +  L+     +    ++L   LF    L     T+   +T   VL++  +  P A +V +
Sbjct: 534 IHELSG-RSFNVASPKQLGEVLFEHLKLPRGKKTKTGWSTDVEVLTNLAEEHPIAARVLD 592

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            R   ++      + L + ++ D GR+  +      + TGR S      QN+P  +    
Sbjct: 593 YR-SVAKLKSTYCDALPKLIHPDTGRIHTSFNQAV-TATGRLSSSDPNLQNIPIRTEEGR 650

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   + +EG  L+ AD + +E R+LA MA E  
Sbjct: 651 R-------------------------IREAFVPAEGNLLLAADYSQVELRILAHMADEPA 685

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             ++F  GED++  T +  F V    VT + R   K +                    G+
Sbjct: 686 LKESFAHGEDIHARTASEIFGVFLELVTPEMRRQAKTIN--------------FGVLYGM 731

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A          +     +  ++ +V
Sbjct: 732 S------------------------------AFGLAKSLGIARKEAQTYIDNYFARYPKV 761

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            E          +                             +    GR     ++ +  
Sbjct: 762 LEFMEAKKAEARE--------------------------KQYVTTLLGRRCAVPEIASKN 795

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
             +        R            +Q  + DI+   M+         K    +VL VHDE
Sbjct: 796 GAVRGY---AERNAI------NYPIQGSAADIIKVAMLRIHERLKAEKLETKMVLQVHDE 846

Query: 632 IVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
           +V + P  ++     L    M         +PL  +    + +R
Sbjct: 847 LVFDMPAAEQAAVENLVREQMEHAFE--LDVPLLVDMGVGRNWR 888


>gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 772

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 197 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 246

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 247 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 298

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 299 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 355

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 356 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 415

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 416 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 474

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 475 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 532

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 533 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 568

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 569 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 613

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 614 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 644

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 645 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 678

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 679 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 729

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 730 FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 768


>gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
 gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80]
          Length = 906

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 205/703 (29%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 330 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 379

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 380 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 437

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 438 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 487

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q+ 
Sbjct: 488 RIHPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLEQLEQKA 547

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 548 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 606

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N +     T      + TGR S      QN+P  +     
Sbjct: 607 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 665

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 666 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 700

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 701 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 746

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 747 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 776

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 777 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 810

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 811 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 861

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 862 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902


>gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430]
 gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158]
          Length = 891

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 108/706 (15%), Positives = 207/706 (29%), Gaps = 170/706 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L+            +I  +F             HD            + 
Sbjct: 315 AFDLETDSLDTLS----------ANIIGISFATAPGEAAYLPVAHDYLDAPEQLDRSDVL 364

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110
             LK  LE+     V  N  F+R VLK     DI +      T++ + +         + 
Sbjct: 365 ARLKPLLEDPQSQKVGQNLKFDRGVLKRY---DIELLGIRFDTMLESYALNSVAGRHDMD 421

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +                L  +    E            ++ A      Y   D  VT +
Sbjct: 422 TLASR------------WLQHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQ 469

Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  ++ P   KEQ            L  +   I   G  +D ++    +Q +     +L+
Sbjct: 470 LHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLAELE 529

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
            +   L      +    ++L+T LF + G+     T     +T + VL+      P    
Sbjct: 530 LKAHELAG-EPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKV 588

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R   ++      + L   +N       T      + TGR S      QN+P  +  
Sbjct: 589 ILEHR-GLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDE 647

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G +++ AD + IE R++A ++ +
Sbjct: 648 GRR-------------------------IRQAFIAPQGHRILAADYSQIELRIMAHLSQD 682

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF + +D++  T A  F VA  +V+ +QR   K +                    
Sbjct: 683 KGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINF--------------GLIY 728

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  + +        ++    + +++ 
Sbjct: 729 GMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFERYP 758

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +      +   Q                             +    GR L   D+  
Sbjct: 759 GVLQYMESTRELAAQ--------------------------KGYVSTLDGRRLYLPDINA 792

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTV 628
           + +      +   R            +Q  + DI+   M+               +++ V
Sbjct: 793 SNAMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQV 843

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E        A + +  LM  +      +PL+ +      +
Sbjct: 844 HDELVFEVQADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 887


>gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 207/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDDKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D       ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKGDLDAVSKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
 gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I]
          Length = 936

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 93/713 (13%), Positives = 195/713 (27%), Gaps = 175/713 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + +D ET    ++             ++  +   +          H              
Sbjct: 352 VAVDTETTGLDEMVV----------DLVGISLCVEAGEACYIPLAHKAGGDDLFGGEGLS 401

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                      +LK+ LE+  V  +  N  ++  +L       + +     T++++ +  
Sbjct: 402 EGQMPLEEAVAMLKDVLEDPAVLKIGQNMKYDAKILHRY---GVDVAPIDDTMLMSYALH 458

Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E            K L+                    R        Y 
Sbjct: 459 AGLHGHGMDTLSERY--LDHTPIPIKPLL----------GSGKSAVTFDRVPIEDAVPYA 506

Query: 162 KGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  +T  +++  +P   +E+           L  +   +   G  VD      ++   
Sbjct: 507 AEDADITLRLWQTFKPQLHQERVTTVYETLERPLVPVLAEMERNGIKVDRDTLSRMSNAF 566

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
             +   L+ E+  L      +     +L   LF + GL      +    +T   +L    
Sbjct: 567 AQKMAGLEAEIHELAG-ETFNVGSPAQLGEILFDKMGLEGGKRGKNGKYSTGADILEDLA 625

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +V + R   S+      + L + +N D     T      + TGR +      Q
Sbjct: 626 TEHDLPRRVLDWRQ-LSKLKSTYTDALQDHINKDTGRVHTSYAQTGASTGRMASTDPNLQ 684

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  S                              +R   +A EG  L+  D + IE R
Sbjct: 685 NIPVRSEEGRR-------------------------IREAFVAEEGNVLLSLDYSQIELR 719

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA MAG +   +AF  G+D++  T +  F V   ++T + R   K +            
Sbjct: 720 ILAHMAGIETLQQAFAEGQDIHALTASEMFGVPLEEMTPEIRRQAKAIN----------- 768

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++                                  A          +   
Sbjct: 769 ---FGVIYGIS------------------------------GFGLARNLRIPRKDAQGFI 795

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             + ++   + +  +   +  ++                          +  +    GR 
Sbjct: 796 DRYFERFPGIRKYMDSTVEFAKE--------------------------HGYVQTLFGRK 829

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYD 623
           +   ++               R            +Q  + D++   M+            
Sbjct: 830 IHTAEINAK----GPKAGFAKRAAINAP------IQGTAADVIRRAMIRMPEAIAHLPAR 879

Query: 624 IVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
           ++L VHDE++ E P+   E   +    +M +    A    + L  +    K +
Sbjct: 880 MLLQVHDELLFEVPEAAVEDTIAAAREVMENAADPAVHLDVKLVVDAGRGKNW 932


>gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
           Complex
          Length = 605

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 101/701 (14%), Positives = 204/701 (29%), Gaps = 167/701 (23%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVL 57
            ET S  +++            ++  +F  +          HD              ++L
Sbjct: 33  TETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGE 114
           K  LE+     V  N  ++R +L     +++       T++ +           + ++ E
Sbjct: 83  KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDSLAE 140

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                         L  +    E            ++ A    G Y   D  VT ++  +
Sbjct: 141 R------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 188

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K              L  +   I   G  +D  + H  ++ + +   +L+++  
Sbjct: 189 MWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAH 248

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 249 EIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 307

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 308 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 365

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 366 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 401

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 402 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYGMS- 446

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        ++    + +++  V E
Sbjct: 447 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 477

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++   
Sbjct: 478 YMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGA 511

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+              +++ VHDE+V
Sbjct: 512 RRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 562

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 563 FEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
 gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11]
          Length = 949

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 99/720 (13%), Positives = 205/720 (28%), Gaps = 180/720 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM---------- 53
           + +D ET    ++             ++  +   +          H              
Sbjct: 356 VAVDTETTGLDEMK----------ADLVGISLAVEPGAACYIPLAHKAEAGSDDLFGSDT 405

Query: 54  -----------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLV 98
                        +LK  LE+  +  +  N  ++  + +          I +  +  T++
Sbjct: 406 LAEGQMDFATALSMLKPVLEDPAILKIGQNMKYDAKIFRRQHGAGFEDGITVAPYDDTML 465

Query: 99  LARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           L+ +         +  + E     S      K L+                    R    
Sbjct: 466 LSYALFAGQHGHGMDTLSERY--LSHSPIPIKSLL----------GTGKSAITFDRVPIA 513

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAH 205
               Y   D  +T  ++K  +P   +++           L  +   +   G  VD     
Sbjct: 514 DAVAYAAEDADITLRLWKLFKPQLHQQRVTTVYETLERPLSPVLAKMEMEGVKVDRDTLS 573

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQR 261
            ++     +   L+ E+  L      +    ++L   LF + GL      +T    T   
Sbjct: 574 RMSNAFAQKMAALESEIHELAG-ETFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGAD 632

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWS 320
           +L           +V + R   S+      + L + ++ + GR+  +    GA+ TGR +
Sbjct: 633 ILEDLATEHDLPARVLDWRQ-LSKLKSTYTDALQDHIHPETGRVHTSYVQTGAN-TGRLA 690

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QN+P  S                              +R   +A EG  L+  D
Sbjct: 691 STDPNLQNIPIRSEEGRR-------------------------IREAFVAEEGNVLLALD 725

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +AG     +AF  G+D++  T +  FNV  +++T D R   K +     
Sbjct: 726 YSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLSEMTPDIRRQAKAIN---- 781

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G++                                  A       
Sbjct: 782 ----------FGVIYGIS------------------------------GFGLARNLRIPR 801

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              +     + ++   +    ++     ++                          +  +
Sbjct: 802 AEAQGFIDRYFERFPGIRRYMDDTVAFAKE--------------------------HGYV 835

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616
               GR +   ++    +          R            +Q  + D++   M+     
Sbjct: 836 QTLFGRKIHTPEI----AAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPEA 885

Query: 617 ATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
                  ++L VHDE++ E P++  E        +M S    A    + L A+  + K +
Sbjct: 886 IAHLPARMLLQVHDELLFEVPESAAEDTIEAARKVMESAADPAVHLDVKLVADAGQGKNW 945


>gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
 gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25]
          Length = 929

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 105/712 (14%), Positives = 198/712 (27%), Gaps = 168/712 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
                D ET              A+   ++  +F    H        H            
Sbjct: 342 KLFAFDTETT----------GIDAQQAQLVGVSFAVQPHEAAYIPLTHAYIGAPEQLDRD 391

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKAC-------FNLDIPIHRWICTLVLARSNG 104
            +   LK  LE+     V  ++ F+  +L  C         + +       T++ +    
Sbjct: 392 TVLLALKPLLEDPTKLKVGQHAKFDMNILANCAIGGDPAHGITVRGIA-FDTMLESYVLN 450

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                     A +     + + K L       +       +     + A    G Y   D
Sbjct: 451 --------ATATRHDMDSLAK-KYLDYDTVAFQDIAGKGAKQLTFDQIALEQAGPYAAED 501

Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
             VT  + + L                 E  L  +   I  +G  VD  L    +  +  
Sbjct: 502 ADVTLRLHQALFAQLSAIPSLASVLTDIEIPLVPVLARIERQGALVDKDLLGIQSIELGN 561

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKL 269
           +  +L+++   +      +    ++L   L+ + GL +   T     +T + VL+   + 
Sbjct: 562 KMVELERQAFEIAG-EEFNLGSPKQLGAILYEKLGLPVLKKTGKGQASTAEEVLAKLAED 620

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQN 328
                +V       S+      + L E +N   GR+  +     A+ TGR S      QN
Sbjct: 621 DYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQN 679

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +                              +R   IA +G K++ AD + IE R+
Sbjct: 680 IPVRTAEGRR-------------------------IRQAFIAPKGYKMLAADYSQIELRI 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  + AF    D++  T A  F V    VT DQR   K +             
Sbjct: 715 MAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINF----------- 763

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G+                                 +   +        +    
Sbjct: 764 ---GLIYGMG------------------------------AQKLGKDIGVDTKTAKAYID 790

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            +  ++  V E                                    +   +    GR L
Sbjct: 791 VYFARYPGVREYMERTRAQA--------------------------SDQGYVETFFGRRL 824

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGY 622
              D+ +N+           R            +Q  + DI+ + M+             
Sbjct: 825 YLPDIHSNKP---QERAAAERTAINAP------MQGTAADIIKKAMVLVDNWLTDSGLDA 875

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E  +         +   M++       +PL  E      +
Sbjct: 876 KVILQVHDELVLEVREDLVAEVSEKIREYMSAAAQ--LDVPLLVEVGVGDNW 925


>gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150]
 gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968]
 gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150]
          Length = 894

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 102/701 (14%), Positives = 202/701 (28%), Gaps = 164/701 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK------ 58
            ID ET S   +             ++  +   ++         HD   PQ+L+      
Sbjct: 322 CIDTETTSLDVMM----------AEIVGISLAIEEGKAAYIPLTHDDGSPQLLREEVLTA 371

Query: 59  --EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113
               LEN  +  +  N  ++ +VL+    + +    +  T++ +           + ++ 
Sbjct: 372 LNPILENPTIKKIGQNLKYDYSVLRNH-GITLKGI-YYDTMLESYVLNSGSGRHDMDSLA 429

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                       G + I+     E       +     +      G Y   D  +T ++  
Sbjct: 430 LKY--------LGHKTISY----EEIAGKGAKQLRFDQIPVEKAGAYAAEDADITLQLHH 477

Query: 174 RLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +L PL          + E  L  +   +   G  +D A      + +      L++E   
Sbjct: 478 KLYPLIPESVHHVFGNIEMPLVTVLADMERMGVLIDSATLKQHGERLKERIRTLEEEALH 537

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L      +    ++L+  LF    L           +T + VL         A  +   R
Sbjct: 538 LAG-KPFNLNSPKQLQEILFDSHKLPIIAKTPTGQPSTAEAVLQELAYDYRLAAVILEYR 596

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++     ++ L + +N       T      + TGR S      QN+P  S       
Sbjct: 597 -SLTKLVSTYIDALPKKINPKTNRVHTSYNQAVTATGRLSSSEPNLQNIPIRSEEGR--- 652

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R+  IA E   ++ AD + IE R++A ++ ++  LK
Sbjct: 653 ----------------------LIRTAFIAPEDNIILAADYSQIELRIMAHLSQDENLLK 690

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T +  F +   ++  +QR   K +                    G++  
Sbjct: 691 AFANGWDVHAATASEIFQIPLEEINNEQRRRAKAIN--------------FGLIYGMSSF 736

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  +                                     +     + Q++ +V E 
Sbjct: 737 GLAKQI------------------------------GVERQDAQYYIDTYFQRYPKVLEY 766

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            N   Q                             +   +    GR L   ++       
Sbjct: 767 MNRTRQQAH--------------------------HQGYVETLFGRRLYLPEINARNLMR 800

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIVLTVHDEIV 633
               +   R            +Q  + DI+   M+   K           +++ VHDE+V
Sbjct: 801 ---QKAAERTAINAP------MQGTAADIIKNAMICIAKWQNSHEKPPARMIMQVHDELV 851

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E       ++   +  LM    +    +PL         +
Sbjct: 852 FEVNKNAIESSKEMIRELMEHTVT--LSVPLVVSIGTGANW 890


>gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355]
          Length = 928

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 107/706 (15%), Positives = 211/706 (29%), Gaps = 170/706 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     LT            ++  +F             HD            + 
Sbjct: 352 AFDLETDGLDTLT----------ANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+ D + V  N  ++R VLK   ++++   ++  T++ +           + +
Sbjct: 402 AQLKPLLEDPDASKVGQNLKYDRGVLKNY-DIELAGIKY-DTMLESYILNSVVGKHDMDS 459

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L  +    E            ++ A      Y   D  VT ++
Sbjct: 460 LSAR------------WLNHKTITFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQL 507

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P               E  L  +   +   G  +D A+    ++ +     +L+ 
Sbjct: 508 HLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLAELEL 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF + G+     T     +T + VL+      P    +
Sbjct: 568 KAHELAG-EPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVI 626

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
             +R   S+      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 627 LEHR-GLSKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSTDPNLQNIPVRNDE 684

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A +G ++V AD + IE R++A ++ +
Sbjct: 685 GRR-------------------------IRQAFVAGKGNRIVAADYSQIELRIMAHLSQD 719

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  GED++  T +  F V  ++VT +QR   K +                    
Sbjct: 720 KGLLDAFSQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINF--------------GLIY 765

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  + +        ++    + +++ 
Sbjct: 766 GMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFERYP 795

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V        Q                             +N  +    GR L   D+ +
Sbjct: 796 GVLRYMENTRQLA--------------------------ASNGYVETLDGRRLWLPDIKS 829

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTV 628
           + +      +   R            +Q  + DI+   M+               +++ V
Sbjct: 830 SNAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDDWLQKQTDDAVRMIMQV 880

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E        A   +  LM  +   A  +PL  E      +
Sbjct: 881 HDELVFEIKAEAVDEASKQIRALMEGSM--ALDVPLLVEVGVGDNW 924


>gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895]
 gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895]
          Length = 928

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 101/701 (14%), Positives = 206/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +              ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDN----------HAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+     V  N  ++R VL+    +++       T++ +      +       
Sbjct: 403 ELLKPLLEDEKARKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILNSVAG------ 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + E + L  +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 --RHDMDSLSE-RWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQYKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA +   +  AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPQDYVIASADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLESVTAEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------RGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+   K          +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDKWLQDEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D       ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLDVVSKKIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51]
 gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51]
          Length = 930

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 205/703 (29%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 354 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVI 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 404 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 461

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 462 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 511

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q+ 
Sbjct: 512 RIHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKA 571

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 572 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 630

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N +     T      + TGR S      QN+P  +     
Sbjct: 631 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 689

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 690 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 724

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 725 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 770

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 771 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 800

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 801 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 834

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 835 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 885

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 886 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 926


>gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103]
 gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103]
          Length = 928

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 107/706 (15%), Positives = 211/706 (29%), Gaps = 170/706 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     LT            ++  +F             HD            + 
Sbjct: 352 AFDLETDGLDTLT----------ANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+ D + V  N  ++R VLK   ++++   ++  T++ +           + +
Sbjct: 402 AQLKPLLEDPDASKVGQNLKYDRGVLKNY-DIELAGIKY-DTMLESYILNSVVGKHDMDS 459

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L  +    E            ++ A      Y   D  VT ++
Sbjct: 460 LSAR------------WLNHKTITFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQL 507

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P               E  L  +   +   G  +D A+    ++ +     +L+ 
Sbjct: 508 HLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLAELEL 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF + G+     T     +T + VL+      P    +
Sbjct: 568 KAHELAG-EPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVI 626

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
             +R   S+      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 627 LEHR-GLSKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSTDPNLQNIPVRNDE 684

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A +G ++V AD + IE R++A ++ +
Sbjct: 685 GRR-------------------------IRQAFVAGKGNRIVAADYSQIELRIMAHLSQD 719

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  GED++  T +  F V  ++VT +QR   K +                    
Sbjct: 720 KGLLDAFSQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINF--------------GLIY 765

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  + +        ++    + +++ 
Sbjct: 766 GMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFERYP 795

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V        Q                             +N  +    GR L   D+ +
Sbjct: 796 GVLRYMENTRQLA--------------------------ASNGYVETLDGRRLWLPDIKS 829

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTV 628
           + +      +   R            +Q  + DI+   M+               +++ V
Sbjct: 830 SNAIRR---KAAERAAINAP------MQGTAADIIKRAMIALDDWLQKQTDDAVRMIMQV 880

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E        A   +  LM  +   A  +PL  E      +
Sbjct: 881 HDELVFEIKAEAVDEASKQIRALMEGSM--ALDVPLLVEVGVGDNW 924


>gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217]
 gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217]
          Length = 921

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 103/707 (14%), Positives = 205/707 (28%), Gaps = 166/707 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
             + ID ET S   +          D  ++  +F  +          HD           
Sbjct: 342 KLIAIDTETTSLNYM----------DAKLVGISFAIEAGEAAYLPLAHDYLDAPSQIDMA 391

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LK 110
              + L+  LE+ +   V  N  ++ ++      + +       T++ +      ++   
Sbjct: 392 TALEKLRPLLESDNPAKVGQNLKYDISIFAN-VGIKLKGVH-FDTMLESYVFNSVASRHD 449

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
             G ALK    K    ++                +    ++        Y   D  +T  
Sbjct: 450 MDGLALKYLGHKNISFED----------VAGKGAKQLTFNQIDLDTAAPYAAEDADITLR 499

Query: 171 IFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L P   KE             L  +   I  +G  +D  L    +  +  +  KL+
Sbjct: 500 LHQHLWPRLEKEPELAQVFTELELPLIQVLSDIERQGVLIDPMLLSQQSDELAQKIDKLE 559

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
            E   +      +    ++L+   F +    +   T     +T + VL       P    
Sbjct: 560 LEAYEIAG-EKFNLGSPKQLQVLFFEKLAYPIIKKTPKGAPSTAEEVLVELALDYPLPKI 618

Query: 276 VFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   ++      + L   +N + GR+  +     A+ TGR S      QN+P  + 
Sbjct: 619 ILAHR-SLAKLKSTYTDKLPLMVNGTTGRVHTSYHQANAA-TGRLSSSDPNLQNIPIRTE 676

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA  G+K++ AD + IE R++A ++ 
Sbjct: 677 EGRR-------------------------IRQAFIAPAGRKILAADYSQIELRIMAHLSQ 711

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F     +VT +QR   K +                   
Sbjct: 712 DKGLLTAFAEGKDIHRATAAEVFGAHFEEVTTEQRRRAKAVNF--------------GLI 757

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    A  +                                     +     +  ++
Sbjct: 758 YGMSAFGLAKQLDI------------------------------PRNEAQTYIDTYFARY 787

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +   E   +  +                             +    GR L   ++ 
Sbjct: 788 PGVLQYMEETRASAAE--------------------------LGYVSTLFGRRLYLPEIR 821

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLT 627
           +  +          R            +Q  + DI+ + M+N              +++ 
Sbjct: 822 DRNAMRRQA---AERAAINAP------MQGTAADIIKKAMINIANWIKTETQGEITMIMQ 872

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E  +         +  LM         + L AE      +
Sbjct: 873 VHDELVFEVDEAQAETLKAKICLLMAQAAD--LDVTLLAEAGIGNNW 917


>gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601]
 gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601]
          Length = 935

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 105/714 (14%), Positives = 200/714 (28%), Gaps = 176/714 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + +D ET    ++             ++  +   +          H              
Sbjct: 350 VAVDTETTGLNEMAC----------DLVGISLCTEPGEACYIPLAHRADSDGGLFGDGDL 399

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                       +LK  LE+  V  +  N  ++  +        + I     T++++ + 
Sbjct: 400 AEGQMPMQAALDLLKPLLEDPAVMKIGQNMKYDAKIFARY---GVRIAPIDDTMLMSYAM 456

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   + A+ E     S      KEL+              + K   +       +Y
Sbjct: 457 NAGLHGHGMDALSERY--LSHTPIPIKELL----------GSGKKMKTFDQVPIEDAVKY 504

Query: 161 CKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  ++  L+P              E+ L  +   +   G  VD      ++  
Sbjct: 505 AAEDADITLRLWTLLKPQLHRNHVTRVYETMERPLVPVLAEMEMAGVQVDRDTLSRMSNA 564

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +   L+ E+  L      +    ++L   LF + GL      +T    T   VL   
Sbjct: 565 FSQKMAALEAEIHELAG-ESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADVLEDL 623

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   +V + R   S+      + L E +N D     T   +  + TGR S      
Sbjct: 624 ATEHELPARVLDWRQ-LSKLKSTYTDALQEHINKDTGRVHTSYVISGANTGRLSSTDPNL 682

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  S                              +R   +A EGK +V  D + IE 
Sbjct: 683 QNIPVRSEEGRR-------------------------IREAFVAPEGKTIVALDYSQIEL 717

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA MA      +AF  G+D++  T +  FNV   ++T + R   K +           
Sbjct: 718 RILAHMAEIDALKQAFRDGQDIHAMTASEMFNVPMDEMTSEIRRQAKAIN---------- 767

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A       +  +  
Sbjct: 768 ----FGVIYGIS------------------------------GFGLARNLRIPRSEAQGF 793

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + ++   +    ++     ++                             +    GR
Sbjct: 794 IDRYFERFPGIRTYMDDTVAFAKEHK--------------------------RVETLFGR 827

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622
            +   ++    +          R            +Q  + DI+   M+       K   
Sbjct: 828 VIHTPEI----AAKGPRAGFAKRAAINAP------IQGTAADIIRRAMIRMPDAIEKLPA 877

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E     E    S    +M     P     +PL  +  + K +
Sbjct: 878 TMLLQVHDELIFEVEQGAEEALISAARTVMEGAAEPVVKLDVPLVVDAGQGKSW 931


>gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
 gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181]
          Length = 904

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 100/707 (14%), Positives = 208/707 (29%), Gaps = 168/707 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------- 52
               ID ET S   +             ++  +   +          H            
Sbjct: 327 KFFSIDTETNSLNTMK----------AELVGISLCINPGRACYIPLCHKNSSVDQLSLAA 376

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALK 110
           + + LK  LE++ +  +  N  ++  +      ++I       T++++          + 
Sbjct: 377 VLEDLKPILEDSSIKKLGQNLKYDAHIFLNY-GIEINGIS-DDTMLMSYVIESNQNHGMD 434

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +             G    +     E+            + +      Y   D  VT +
Sbjct: 435 KLSAKY--------LGHNCKSY----ESLVGKGVNQLTFDQVSVEDAVPYAAEDADVTLQ 482

Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           ++  ++                          I   G  +D  +    ++++  +   L+
Sbjct: 483 LYLAMKETLDSNPSLLRVYKDIEIPAMKALIHIERNGVLIDPKILGDQSKVIGEKLLLLE 542

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQ 275
           ++   L      +    ++L+  LF +  +         T +T + VLS      P    
Sbjct: 543 EKAFDLAGQP-FNLSSPKQLQEILFEKLEIKPLKKTPSGTPSTSEEVLSELALNYPLPKL 601

Query: 276 VFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +   R   ++      + L + +N S GR+  +     A  TGR +      QN+P  + 
Sbjct: 602 ILEYR-SLAKLKSTYTDKLPKMINESSGRVHTSYNQAIA-ITGRLASSDPNLQNIPIRTV 659

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
              +                         VR   IA +G K++ AD + IE R++A ++ 
Sbjct: 660 EGRK-------------------------VREAFIAPDGSKILSADYSQIELRIMAHLSK 694

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF+  ED++  T    FN+  + V+ +QR   KV+                   
Sbjct: 695 DKRLVAAFKNNEDIHTITAGEIFNIDNSAVSSEQRRYAKVIN--------------FGLI 740

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+ +                                 A        A +   + +  K+
Sbjct: 741 YGMGV------------------------------YGLAKNLNIERAAAQNYIERYFSKY 770

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V E   +  Q   +                          N  +    GR L   ++ 
Sbjct: 771 PSVREYMEDTKQDARK--------------------------NGYVETHFGRRLWVPEIN 804

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLT 627
            +            R    G       +Q  + D++   M+               +++ 
Sbjct: 805 GSNGMQR---AGAERAAINGP------MQGTAADLIKMAMVGVKTWLDGQRHLKGKMIMQ 855

Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E PDT+       +  +M +       +PL  +  E K +
Sbjct: 856 VHDELVFEVPDTEVTEFKENIKRIMENVAQ--MDVPLIVDLGEGKNW 900


>gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385]
 gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385]
          Length = 934

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 205/703 (29%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVI 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 466 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 515

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q+ 
Sbjct: 516 RIHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKA 575

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 576 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 634

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N +     T      + TGR S      QN+P  +     
Sbjct: 635 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 693

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 694 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 774

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 775 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 804

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 805 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 838

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 839 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 890 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930


>gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
 gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3]
          Length = 924

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 101/708 (14%), Positives = 197/708 (27%), Gaps = 169/708 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             +  D ET +   +             ++  +   +          HD           
Sbjct: 346 DLISFDTETDALDAMR----------ARLVGISLAVEPGKAAYIPVGHDYPGAPPQLPMQ 395

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108
            +   L+  L++     +  +  ++  VL+    +++  +    T++ +           
Sbjct: 396 QVLDALRPVLQDPAKKKLGQHGKYDLHVLRRH-GVEVQGYH-DDTMLESFVLNSTATRHD 453

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + ++             G   I    K E       +  P  +        Y   D  +T
Sbjct: 454 MDSLALRY--------LGYNTI----KFEDVAGKGAKQIPFSQVGIDEASRYAAEDADIT 501

Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L+P               E  L  +  +I   G  +D       +Q +      
Sbjct: 502 LRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTSIEANGVRIDTVELRRQSQDLSSRMLA 561

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQA 273
             Q+   L      +    ++L+  LF E  L           +T +  L +        
Sbjct: 562 AQQKATELAG-RSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELP 620

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +   R   ++      + L E +N D GR+  +    GA+ TGR S      QN+P  
Sbjct: 621 RVILEYR-GLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGAA-TGRLSSSDPNLQNIPIR 678

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R   IA EG +L+ AD + IE R++A +
Sbjct: 679 TEDGRR-------------------------IRRAFIAPEGFQLLAADYSQIELRIMAHL 713

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   + AFE G D++  T A  F     +VT ++R   K +                 
Sbjct: 714 SEDPGLVGAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINF--------------G 759

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++                                  A          +     +  
Sbjct: 760 LMYGMS------------------------------AFGLARNLGIDRGQAQDYVALYFS 789

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +    + Q                                 +    GR L   D
Sbjct: 790 RYPGVRDFMERMRQQARD--------------------------QGYVETLFGRRLYLND 823

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVL 626
           +      L        R            +Q  + DI+   M++  +      A   ++L
Sbjct: 824 IHARNQGLR---AGAERAAINAP------MQGTAADIIKRAMVDVDQWLRDSGAPARMIL 874

Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE+V ET  +        +   M+        +PL  +      +
Sbjct: 875 QVHDELVFETESSFVEELRLQVVERMSQAAK--LRVPLVVDTGIGNNW 920


>gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
 gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457]
          Length = 851

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 275 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 324

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 325 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 382

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 383 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 432

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q  
Sbjct: 433 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 492

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 493 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 551

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 552 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 610

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 611 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 645

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 646 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 691

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 692 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 721

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 722 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 755

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 756 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 806

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 807 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 847


>gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
 gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426]
          Length = 906

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 204/703 (29%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 330 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 379

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 380 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 437

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 438 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 487

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q+ 
Sbjct: 488 RIHPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKA 547

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 548 YELAG-KPFNVSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 606

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 607 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 665

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 666 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 700

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 701 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 746

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 747 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 776

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 777 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 810

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 811 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 861

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 862 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902


>gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035]
 gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035]
          Length = 934

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 98/715 (13%), Positives = 199/715 (27%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            +  D ET S  ++             ++  +              H             
Sbjct: 348 YVAFDTETTSLNEM----------QADLVGISLATAPGRACYIPVAHKDGAADDLFGSDA 397

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                     +   LK  LE+  +  +  N  ++  +L A     I +     T++++ +
Sbjct: 398 RAEGQLPLDEVLNALKPVLEDDAILKIGQNMKYDAKILAAH---GITVAPIDDTMLMSYA 454

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  + E              L        +            R       +
Sbjct: 455 LHAGLHGHGMDTLSERY------------LNHSPIPIRSLLGSGKAAVTFDRVPVAEAVK 502

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  ++  L+P   +          E+ L  +   +   G  VD      ++ 
Sbjct: 503 YAAEDADITLRLWLTLKPQLHRAQVTTVYETLERPLVPVLARMERDGVLVDRDTLRAMSG 562

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+ +L      +    ++L   LF E GL   +  +T    T   VL  
Sbjct: 563 KFAQKMAGLESEIHAL-ARRSFNVGSPKQLGEILFDEMGLPGGEKGKTGAYATGADVLED 621

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    +V + R   S+      + L + ++ D     T      + TGR+S     
Sbjct: 622 LATEHDLPARVLDWRQ-LSKLKSTYTDALQDHIDPDTGRVHTSYLQTGASTGRFSSSDPN 680

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A+ G +LV  D + IE
Sbjct: 681 LQNIPVRSEEGRR-------------------------IREAFVAAPGNRLVSLDYSQIE 715

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +AG +   +AF  G D++  T +  FNV  A++T + R   K +          
Sbjct: 716 LRILAHVAGIETLKQAFRDGHDIHAMTASEMFNVPLAEMTPEIRRQAKAIN--------- 766

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 767 -----FGVIYGIS------------------------------GFGLARNLRIPRGEAQG 791

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   + +  +      ++                          +  +    G
Sbjct: 792 FIDRYFERFPGIKDYMDATTAFAKE--------------------------HGYVQTLFG 825

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621
           R +   ++    +          R            +Q  + DI+   M+          
Sbjct: 826 RKIHTPEI----AAKGPRAGFARRAAINAP------IQGTAADIIRRAMIRMPEAIEGLP 875

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673
             ++L VHDE++ E  +        +   +M      A    +PL  +  + + +
Sbjct: 876 CKMLLQVHDELIFEVAEDSVDRLIDVARAVMQGAADPAVRLDVPLVVDAGQGRNW 930


>gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016]
 gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016]
          Length = 957

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 102/703 (14%), Positives = 201/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F   +         HD            + 
Sbjct: 381 AFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVL 430

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +VL     +++   +   T++ +              
Sbjct: 431 AQLKPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 488

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+         ++L                    ++        Y   D  VT  +  
Sbjct: 489 LALRFLQHSCISFEQL----------AGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHN 538

Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     +++            L  +   +   G  +D       +Q + V   +L+Q+ 
Sbjct: 539 RLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKA 598

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+T LF + GL         T +T + VL       P    +  
Sbjct: 599 YEIAGQP-FNMNSPKQLQTILFEQMGLPVIKKTPSGTPSTAEEVLQELALDYPLPSVIME 657

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 658 YR-GLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 716

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 717 -------------------------IRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQAL 751

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF+ G+D++  T A    V+  QV+ +QR   K +                    G++
Sbjct: 752 LDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVN--------------FGLIYGMS 797

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 798 ------------------------------AFGLAKQLGIPRGEAQTYMDKYFERYPGVM 827

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +                                 +  +    GR L   ++ +   
Sbjct: 828 QYMEDTRSNA--------------------------SQHGYVETIFGRRLHLPEITSRNV 861

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 862 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 912

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S       +PL AE      +
Sbjct: 913 LVFEVEESCLTEIESKVQQLMESAAQ--LNVPLVAEAGHGDNW 953


>gi|332288906|ref|YP_004419758.1| DNA polymerase I [Gallibacterium anatis UMN179]
 gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179]
          Length = 925

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 105/702 (14%), Positives = 211/702 (30%), Gaps = 165/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            ID ET S   +             ++  +F  ++         H             + 
Sbjct: 352 AIDTETNSLNYM----------QAKLVGLSFALENGEAAYLPLQHHYLDCPQQLSWKTVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112
             LK  LE+ ++  V  N  ++ T+L     +++       T++ + +        +  +
Sbjct: 402 AALKTVLEDPNIKKVGQNLKYDLTILARH-GVELQ-GVVYDTMLESYTLDSTGRHNMDDL 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            +             + I      E             +       EY   D  VT ++ 
Sbjct: 460 AKRFLH--------HDTIHF----EDLAGKGKGQLTFDQIEIDKAAEYAAEDADVTFKLH 507

Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P               E  L  +   +   G  +D  L +  +Q ++    +L+Q+
Sbjct: 508 QVLWPQLNQTPSLVKLFTEVELPLSQVLARMERNGVLIDSDLLYQQSQEINARLIQLEQQ 567

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              L      +    ++L+  LF + GL +   T     +T + VL            + 
Sbjct: 568 AHQLAGQA-FNLASTKQLQEILFGKLGLPVLKKTPKGAPSTNEEVLEELAYEHELPKLLV 626

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R   S+      + L + ++ +     T      + TGR S      QN+P  S    
Sbjct: 627 EHR-GFSKLKSTYTDKLPQMIDPNTGRVHTSYHQAVTITGRLSSSDPNLQNIPTRSEEGR 685

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +                         +R   IA +G K+V AD + IE R++A ++ +  
Sbjct: 686 K-------------------------IRQAFIAPQGFKVVAADYSQIELRIMAHLSADAG 720

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
              AF  G D++ +T A  F+V   QVT  QR   K +                    G+
Sbjct: 721 LAYAFSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAIN--------------FGLIYGM 766

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  ++                                    +     +  ++  V
Sbjct: 767 SAFGLARQLQI------------------------------PRNEAQTYIDRYFHRYPGV 796

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +  N++ +  +Q                             +    GR L   ++ ++ 
Sbjct: 797 KQFMNDIQEKAKQ--------------------------QGYVETLLGRRLYLPELKSSN 830

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTVHDEI 632
                  +   R            +Q  + DI+ + M++       K    +++ VHDE+
Sbjct: 831 GMRR---KAAERVAINAP------MQGTAADIIKKAMIDIDRFIADKNDIRMIMQVHDEL 881

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E  +         +  +M +       +PL  E      +
Sbjct: 882 VFEVKEDKVEYYEKIIKDMMENAVK--LSVPLIVEVNFGDNW 921


>gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
 gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O]
          Length = 931

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 202/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F   +         HD            + 
Sbjct: 355 AFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDREWVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +VL     +++   +   T++ +              
Sbjct: 405 AQLKPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 462

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+         ++L                    ++        Y   D  VT  +  
Sbjct: 463 LALRFLQHSCISFEQL----------AGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHN 512

Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     +++            L  +   +   G  +D       +Q + V   +L+Q+ 
Sbjct: 513 RLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKA 572

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+T LF + GL         T +T + VL       P    +  
Sbjct: 573 YEIAGQP-FNMNSPKQLQTILFEQMGLPVIKKTPSGTPSTAEEVLQELALDYPLPSVIME 631

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 632 YR-GLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 690

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 691 -------------------------IRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQAL 725

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF+ G+D++  T A    V+  QV+ +QR   K +                    G++
Sbjct: 726 LDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVN--------------FGLIYGMS 771

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 772 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 801

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                          +  +    GR L   ++ +   
Sbjct: 802 QYMEDTRSNAAQ--------------------------HGYVETIFGRRLHLPEITSRNV 835

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 836 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 886

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S       +PL AE      +
Sbjct: 887 LVFEVEESCLTEIESKVQQLMESAAQ--LNVPLVAEAGHGDNW 927


>gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
 gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84]
          Length = 1000

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 104/727 (14%), Positives = 214/727 (29%), Gaps = 186/727 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---------VELWDCVHDP-- 51
            +  D ET S                 ++ F+    D+                 H    
Sbjct: 400 IVAFDTETTSLD----------VMQAEIVGFSLAIADNKNDPSGASIRAAYVPLNHKNGV 449

Query: 52  ----------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                                LK  LE+T V  +A N  ++  ++K      I    +  
Sbjct: 450 GDLLGGGLADNQIPLRDALPRLKALLEDTSVLKIAQNLKYDYLLMKRY---GIETKGFDD 506

Query: 96  TLVLARSNG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
           T++L+            + ++ E           G + IA     +        N     
Sbjct: 507 TMLLSYVLDGGANATHGMDSLSERW--------LGHKPIAY----KDVAGSGKSNITFDL 554

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDV 201
                   Y   D  VT  ++  L+P              E+ L  +   + +RG  +D 
Sbjct: 555 VDIDRATAYAAEDADVTLRLWLVLKPRLAAEKLATVYERLERPLVPVLAHMEERGITIDR 614

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----T 257
            +   L+  +     +L+ E+ +L      +    ++L   LF + GL     T+    +
Sbjct: 615 QILSRLSGELAQGAARLEDEIYTLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWS 673

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T  +VL        +  +   +  + ++      + L   ++ + +   T   L ++ TG
Sbjct: 674 TSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTG 733

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P  +    +                         +R+  I++ G KL+
Sbjct: 734 RLSSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLI 768

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +A      +AF  G D++  T +  F V    +  + R   K +  
Sbjct: 769 SADYSQIELRVLAHVANIPQLEQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINF 828

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            +                G++    A+ +                               
Sbjct: 829 GII--------------YGISAFGLANQLSIE---------------------------- 846

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
              +      K + ++   + +                                      
Sbjct: 847 --RSEAGDYIKRYFERFPGIRDYMESTKATARD--------------------------K 878

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
             +    GR + + ++ ++     +      R            +Q  + D++   M+  
Sbjct: 879 GYVETIFGRRVHFPEIRSSNP---SVRAFNERASINAP------IQGSAADVIRRAMIKM 929

Query: 618 TKAGY--------DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAE 666
             A           ++L VHDE++ E  D D   +  ++  +M +   P+    +PLK +
Sbjct: 930 EPALADAGLGDRVRMLLQVHDELIFEVEDADVERSTPVIVSVMENAAMPAVNMSVPLKVD 989

Query: 667 GYESKRY 673
              +  +
Sbjct: 990 ARAANNW 996


>gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK]
 gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK]
          Length = 922

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 98/708 (13%), Positives = 201/708 (28%), Gaps = 168/708 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             +  D ET     +T            ++  +F  ++         HD           
Sbjct: 343 DVVAFDTETDGLDYMT----------ANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRD 392

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   LK  LE+     V  N  F+ ++L    ++++   ++  T++ +           
Sbjct: 393 WVLAQLKPLLEDPAQNKVGQNLKFDMSILARY-DINMQGIKY-DTMLESYVFNSVVGRHD 450

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + ++                L  +    E       +    ++    + G Y   D  +T
Sbjct: 451 MDSLALRY------------LEHKNISFEEVAGKGKKQLTFNQIDLDVAGPYAAEDADIT 498

Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             +   L                 E  L  +   I   G  +D  L    +  +     +
Sbjct: 499 LRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLDE 558

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273
           L+ +   +      +    ++L+  LF + GL +   T +    T + VL       P  
Sbjct: 559 LETKAYEI-AEQEFNLSSPKQLQAILFEKMGLPILKKTPSGAPSTNEEVLQELALDYPLP 617

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   R   ++      + L + +N       T      + TGR S      QN+P  +
Sbjct: 618 KILLEYR-GLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRN 676

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   IA  G K++  D + IE R++A ++
Sbjct: 677 AEGRR-------------------------IRQAFIAPTGYKILAVDYSQIELRIMAHLS 711

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  L+AF+ G+D++  T A    +    VT +QR   K +                  
Sbjct: 712 GDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINF--------------GL 757

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                  A +        +     + ++
Sbjct: 758 IYGMS------------------------------AFGLAKQLGMGRNEAQDYMNVYFER 787

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V E                                        +    GR L   D+
Sbjct: 788 YPGVLEYMESTRVHA--------------------------SEQGYVETLFGRRLYLPDI 821

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVL 626
            +         +   R            +Q  + DI+   M+   +           +++
Sbjct: 822 KSRNGIRR---KAAERAAINAP------MQGTAADIIKRAMVLVDEWVEQQETGRVRLLM 872

Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE+V E  +++     + +  LM         +PL A+      +
Sbjct: 873 QVHDELVFEVQESELDAVSADVRRLMELAAE--LDVPLIADAGAGNNW 918


>gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
 gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas tunicata D2]
          Length = 916

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 104/704 (14%), Positives = 201/704 (28%), Gaps = 164/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          HD           ++ 
Sbjct: 340 AFDTETTSLDYM----------QADLVGMSFAVEAGKAAYLPIGHDYLGAPEQLSKEMVF 389

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
             L   L +     V  N  ++++VL     L++   +   T++ +              
Sbjct: 390 AKLGPLLADEQRPKVGQNLKYDKSVLARA-GLELNGIK-FDTMLESYVLNSVGTRHDMDS 447

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    +E                     ++        Y   D  +T  + +
Sbjct: 448 LALKYLGHKNISFEE----------IAGKGKNQLTFNQIELDKAAPYAAEDADITLRLHQ 497

Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L  +   I   G  +D  +    +  +     +L++E 
Sbjct: 498 MLWPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDMLAKQSFEIGKRLDELEKEA 557

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+  LF +  L +   T     +T + VL       P    +  
Sbjct: 558 HELAG-EAFNLSSPKQLQVILFEKHELPVIKKTPKGAPSTAEEVLQELAHDYPLPKLIIE 616

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+      + L   +N+D +   T      + TGR S      QN+P  +    +
Sbjct: 617 HR-GLSKLKSTYTDKLPLMVNADTQRVHTSYHQAITATGRLSSTDPNLQNIPIRTEEGRK 675

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A++G K+  AD + IE R++A ++ ++  
Sbjct: 676 -------------------------IRQAFVAAKGYKIAAADYSQIELRIMAHLSQDKGL 710

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G D++  T A  F V+ A+VT D R   K +                    G++
Sbjct: 711 LNAFAQGLDVHSATAAEVFGVSVAEVTTDMRRKAKAVNF--------------GLIYGMS 756

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + ++   V 
Sbjct: 757 ------------------------------AFGLARQLDVPRHEAQHYIDKYFERFPGVL 786

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E      +   +                             +    GR L   ++     
Sbjct: 787 EYMESTREKAAE--------------------------LGYVETLFGRRLYLPEINARNG 820

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
               + +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 821 A---SRKAAERAAINAP------MQGTAADIIKKAMITVNAWVKAQPANTVRLLMQVHDE 871

Query: 632 IVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +V E  +         +  LM+     A  +PL  E      ++
Sbjct: 872 LVFEIKEECVGDYMQHICLLMSQAA--ALDVPLIVESDSGDNWQ 913


>gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105]
 gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105]
          Length = 927

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/704 (15%), Positives = 203/704 (28%), Gaps = 166/704 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VM 53
           +  D ET S   +          +  ++  +F             H             +
Sbjct: 352 VAFDTETDSLEPM----------NARIVGLSFSVKPGVGYYIPLTHQDLTAEPQLPLAEV 401

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111
              LK   E++D   +A N+ ++  V+    ++ +    +  T++ +       P  + A
Sbjct: 402 LAFLKPWFEDSDSPKIAQNAKYDLHVMANH-DVWVK-GLFEDTMLASYILEAHKPHGMDA 459

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L     K E             +       +Y   D  VT  +
Sbjct: 460 LALR------------WLNYNTIKYEEVAGKGASQITFDQVPIDTATKYAAEDAEVTLRL 507

Query: 172 FKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L+    K           E     +   +   G  +D       +  +  +   +++
Sbjct: 508 AHALKAELDKVPELAKLYRDVELPFGQVLFEVERNGVLIDSDKLEAQSAEIADKLKLIEE 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQV 276
           +   L  G   +    +++   LF + GL +   T     +T + VLS   +  P   ++
Sbjct: 568 QAFELAGGS-FNLNSPKQIGELLFDKLGLPVVKKTASGAPSTDEEVLSKLAEDYPLPAKL 626

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   ++      + L   +N+      T      + TGR +      QN+P  +   
Sbjct: 627 LEHR-SLAKLKSTYTDKLPRMVNARTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEG 685

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      VR   IA+ G  LV AD + IE R++A ++G++
Sbjct: 686 RR-------------------------VREAFIAAPGCVLVSADYSQIELRIMAHISGDE 720

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF  G D++  T +  F V   +VT D R   KV+   L Y   A           
Sbjct: 721 ALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVINFGLIYGMSA-----FGLAGN 775

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +   A  +  +     +     F   ++    E        G          R     
Sbjct: 776 LGITREAAKLYIDRYFARYPGVAKFMDNVRAQAKEDGFVQTVFGR---------RLWLPE 826

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +                                             P+G        G  
Sbjct: 827 IKS-------------------------------------------PNGPRRA----GAE 839

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630
           R+ +N                    +Q  S D++   M+         K    +++ VHD
Sbjct: 840 RAAINAP------------------MQGTSADLIKMAMVELSAWLKAEKLNSKMIMQVHD 881

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E++ E P  +       +  +MT        +PL+        +
Sbjct: 882 EVIFEVPKGELELIQKRVPEIMTQVAK--LRVPLEVGCGVGNNW 923


>gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108]
          Length = 927

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 101/700 (14%), Positives = 204/700 (29%), Gaps = 159/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57
             + +D ET S   +          D  ++  +F  ++                 +    
Sbjct: 355 DVISLDTETTSTNAI----------DAQLVGLSFAVEEKKAYYVPVPEQANEAQNIVDKF 404

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   EN +   V  N  ++  VL+    + +       T++            +  + E 
Sbjct: 405 KAIYENPNTLKVGQNIKYDLEVLRNY-GIMLQ-GPLFDTMIAHYLLQPELRHNMDFMAEV 462

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               + +      LI                K     A      Y   D  +T ++   L
Sbjct: 463 Y--LNYETVHIDALIG---------AKGKTQKNMRELAPSEVYAYACEDADITLQLKNVL 511

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P              E  L  +   +   G  +D A     +Q+      +L+QE+   
Sbjct: 512 QPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQA 571

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF E  +      T+T    T + VL + +   P    + + R
Sbjct: 572 AG-KTFNVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHILDYR 630

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L + +N       T      + TGR S      QN+P      +E  
Sbjct: 631 -ALKKLLGTYVDALPKLINPRTGHIHTSFNQAVTATGRLSSSDPNLQNIPVRGEDGKE-- 687

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R C I  EG +   AD + IE RV+A ++ +   L 
Sbjct: 688 -----------------------IRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLD 724

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T A+ ++   ++VT+D+R   K     +                G+ + 
Sbjct: 725 AFREGYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGII--------------YGITVF 770

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  +    A                                +++   + +   +V + 
Sbjct: 771 GLADRLNIERA------------------------------EAKQLIDGYFKMFPQVRDY 800

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             +  +  +                           N  +     R     D+ ++ + +
Sbjct: 801 MEQAKETAK--------------------------ANGYVETFFHRRRYLPDINSSNATV 834

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
                   R            +Q  + DI+   M+              ++L VHDE+  
Sbjct: 835 RGI---AERNAINAP------IQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNF 885

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               T++     +    M +   +   +PL A+G     +
Sbjct: 886 SVLPTEKELVERIVMEEMQAA--YPLDVPLVADGGWGNNW 923


>gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638]
 gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638]
          Length = 930

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 213/701 (30%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD            + 
Sbjct: 355 AFDTETDSLDNIS----------ANMVGLSFATEPGMAAYVPVAHDYLDAPNQISRERVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+     V  N  F+R +L+    +++    +  T++ +          +V  
Sbjct: 405 ELLKPLLEDEKAKKVGQNLKFDRGILQNY-GIELRGIAY-DTMLESYILN------SVAG 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 457 RHDMDSLSDRWLK---HKTVTFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 513

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K+             L  +   I   G  +D A+ H  ++ + +  ++L+Q+  
Sbjct: 514 MWPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKIDPAVLHKHSEELALRLSELEQKAH 573

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 574 EIAG-EPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILQY 632

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 633 R-GLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVAATGRLSSTEPNLQNIPVRNEEGRR- 690

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA +   +V AD + IE R++A ++ ++  L
Sbjct: 691 ------------------------IRQAFIAPKDYLIVSADYSQIELRIMAHLSRDKGLL 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT DQR   K +                    G++ 
Sbjct: 727 TAFAEGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINF--------------GLIYGMS- 771

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 772 -----------------------------AFGLSRQLNIPRKESQKYMDLYFERYPGVLE 802

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 803 YMERTRAQAKE--------------------------KGYVETLDGRRLYLPDITSSNAA 836

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+         K    +++ VHDE+V
Sbjct: 837 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDAWLEKDKPRVRMIMQVHDELV 887

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D       ++ LM  + +    +PL  E    + +
Sbjct: 888 FEVHHEDLEAVSKKIHELMEGSMT--LDVPLLVEVGSGENW 926


>gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
 gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14]
          Length = 924

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 101/706 (14%), Positives = 200/706 (28%), Gaps = 169/706 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           +  D ET +   +             ++  +   +          HD            +
Sbjct: 348 ISFDTETDALDAMR----------ARLVGVSLAVEPGRAAYIPVGHDYPGAPAQLPMQQV 397

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
              L+  L++     +  +  ++  VL+    +D+  +    T++ +           + 
Sbjct: 398 LDALRPVLQDPAKKKLGQHGKYDLHVLRRH-GVDVQGYH-DDTMLESFVLNSTATRHDMD 455

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           ++             G   I    K E       +  P  +        Y   D  +T  
Sbjct: 456 SLALRY--------LGYSTI----KFEDVAGKGAKQIPFSQVGIDEASRYAAEDADITLR 503

Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L+P               E  L  +  TI   G  +D       +Q +        
Sbjct: 504 LHRALQPQLLAEPALDSVYRDIEMPLVPVLTTIEANGVRIDTDELRRQSQDLSSRMLAAQ 563

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275
           Q+   L      +    ++L+  LF E  L           +T +  L +  +       
Sbjct: 564 QKATELAG-RSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIAEQHELPRV 622

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +   R   ++      + L E +N + GR+  +    GA+ TGR S      QN+P  + 
Sbjct: 623 ILEYR-GLAKLRSTYTDKLPEMVNPETGRVHTSYHQSGAA-TGRLSSSDPNLQNIPIRTE 680

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   +A EG +L+ AD + IE R++A ++ 
Sbjct: 681 DGRR-------------------------IRRAFVAPEGCQLLAADYSQIELRIMAHLSE 715

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   ++AFE G D++  T A  F     +VT ++R   K +                   
Sbjct: 716 DPGLVRAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINF--------------GLM 761

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  A          +     +  ++
Sbjct: 762 YGMS------------------------------AFGLARNLGIDRGQAQDYVALYFSRY 791

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +    + Q                                 +    GR L   D+ 
Sbjct: 792 PGVRDFMERMRQQARD--------------------------QGYVETLFGRRLYLNDIH 825

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
                L        R            +Q  + DI+   M++  +      A   ++L V
Sbjct: 826 ARNQGLR---AGAERAAINAP------MQGTAADIIKRAMVDVDQWLRDSGAPARMILQV 876

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V ET  +   +    +   M+        +PL  +      +
Sbjct: 877 HDELVFETESSFVEDLRLQVVERMSQAAK--LRVPLVVDTGIGSNW 920


>gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358]
          Length = 653

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 222/698 (31%), Positives = 316/698 (45%), Gaps = 69/698 (9%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
           M   L ID ET S +DL  CG+ +YA      + LF++ F D PV   D     V+P  +
Sbjct: 1   MKKPLHIDIETFSDVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPSKV 60

Query: 58  KEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
             AL +     VAHN+ FER  +        +    W CT+V     GLP +L  +G+AL
Sbjct: 61  LRALRDPKRIKVAHNAQFERVCIGYELDGRPLDPTNWRCTMVWGSCLGLPQSLDGMGKAL 120

Query: 117 KLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            L  QK +EGK LI  F   CK         +N P H  E W  +G+Y + DV V   I 
Sbjct: 121 GLDVQKDKEGKRLIQYFSKPCKPTKANGGRTQNLPEHAPEDWEHYGKYNEIDVEVETGIS 180

Query: 173 KR---LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +   +  L + E   +  DQ IND G  VDV       ++ D  + +   +L  LT   
Sbjct: 181 DKLAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKRSSMKLRRLTG-- 238

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS--SNKKLTPQAIQVFNNRMRASRSA 287
           V S   +++LK W   + G  +E L +  C+  L+     +  P+  ++      A  +A
Sbjct: 239 VESVTKVQQLKAWAAAQ-GYPVESLDKQHCEDYLNDPELHQDFPEVYRMIELYQEAGGAA 297

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           V K + ++  +  DG ++G L+F GA  T RW+G     QNLPR     ++L+     + 
Sbjct: 298 VAKYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYLKADKLEAARQIVA 357

Query: 348 TSI----TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                      +P+ +I+  VR+ +      +  V+D + IEARV+AW AGE W LKAFE
Sbjct: 358 KGKTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVAWFAGESWVLKAFE 417

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            GED+YV T ++ ++V   +     R  GK   LALGYQGGA A   M            
Sbjct: 418 DGEDIYVATASKMYHVTGEEAEA-MRQKGKQATLALGYQGGANALIVMG----------- 465

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                        A+           + + WR+ +  +  LW+ 
Sbjct: 466 -----------------------------ALRAGIPEEELPELVQLWRKANPNIVNLWHT 496

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG---NNRSYL 580
           + +A    I NG A          ++  K D++ L + LPSGR L Y D     N  SYL
Sbjct: 497 VDKAARMAINNGGAKRYVLADGKLVISYKGDEHVLQVQLPSGRKLNYFDCKIRDNKISYL 556

Query: 581 NTTTRQLTR--EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                  +R    TYGGKLTEN+VQA SRD+L   +M    AG   V  VHDE +   P+
Sbjct: 557 KGVRGDGSRFYADTYGGKLTENLVQATSRDLLLAALMRIEAAGIQTVFHVHDETINIVPE 616

Query: 639 TDEFNASMLYHLMTS-NPSWAKGLPLKAEGYESKRYRK 675
                   + +LMTS  P WA GLPL +EG   K YRK
Sbjct: 617 G--TKIEEINNLMTSPAPEWADGLPLDSEGDVIKYYRK 652


>gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1]
 gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1]
          Length = 978

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 103/716 (14%), Positives = 204/716 (28%), Gaps = 175/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET S   +             +   A     +        H             
Sbjct: 389 VVALDTETTSLDPM----------QAELCGIALATAPNRAAYLPLSHKNGAEDLLGGGMV 438

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                      VL+  L++  V  +  N  ++  +L       I I  +  T++++    
Sbjct: 439 DGQIRVEEALAVLRPLLQDPSVLKIGQNLKYDWVLLYRH---GIEIAPYDDTMLISYVLE 495

Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  + A+ E           G   ++     +                      Y 
Sbjct: 496 AGTQAHGMDALAERW--------LGHTPVSY----KEVTGSGRSKVTFDMVGLERATVYA 543

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  ++K L+P              E+ +  +   +  RG  VD  +   ++   
Sbjct: 544 SEDADVTLRLWKVLKPQLAAKGLVSVYERLERPMVSVICRMEHRGIMVDRQILSRMSGDF 603

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK 267
                 +++E+  L  G   +    ++L   LF   GL     T++    T  +VL    
Sbjct: 604 AQTAAAMEEEIYRLAGGR-FTIGSPKQLGDILFGRMGLPGGAKTKSGQWSTSAQVLEELA 662

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +  +   +  + ++      + L   ++ +     T   L ++ TGR S      Q
Sbjct: 663 AAGHELPRKIVDWRQVTKLKSTYTDALPGYIHPETGRVHTSYSLASTTTGRLSSSEPNLQ 722

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA+ G KL+ AD + IE R
Sbjct: 723 NIPVRTPEGRK-------------------------IRTAFIAAPGYKLISADYSQIELR 757

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      KAF  G D++  T +  F V    +  + R   K +            
Sbjct: 758 VLAHVADIPELKKAFAEGMDIHAMTASEMFGVPVEGMPGEVRRRAKAINF---------- 807

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                         
Sbjct: 808 ----GIIYGISAFGLANQLSI------------------------------PRDEAGAYI 833

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           K + ++   + +          +                             +    GR 
Sbjct: 834 KRYFERFPGIRDYMERTKAFCRE--------------------------KGYVETIFGRR 867

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY----- 622
             Y ++ ++     +      R            +Q  + DI+   MM    A       
Sbjct: 868 AHYPEIRSSNP---SVRAFNERASINAP------IQGSAADIIRRAMMRMEAALADSGLV 918

Query: 623 --DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
              ++L VHDE+V E P+        ++  +M     P+ +  +PLK +   +  +
Sbjct: 919 DVKMLLQVHDELVFEAPEDAIERAIPVIRTVMEGAAWPARSLSVPLKVDARAADNW 974


>gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666]
 gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666]
          Length = 944

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 105/706 (14%), Positives = 200/706 (28%), Gaps = 167/706 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + +D ET S  ++             ++  +F             HD            +
Sbjct: 370 VAVDTETTSLDEML----------AQIVGISFSVTPGEAAYIPLTHDYPDAPAQLPRDEV 419

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111
              LK  LEN  +  +  +  ++R V      +++  +    T++ +    +  P  L +
Sbjct: 420 LARLKPWLENPAIAKLGQHVKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVHKPHGLAS 477

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E           G+  I      E            ++       EY   D   T ++
Sbjct: 478 LAERH--------VGRSGINY----EDLCGKGVHQIKFNQVDIAKAAEYSCEDSDQTLDV 525

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L P                +       I   G  +D       +  +     +L+ E
Sbjct: 526 HRVLWPQIEANDKLRFVYELEMKSSETLYRIERNGVLIDAPTLAKQSGELGARIVQLEAE 585

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              L      +    +++    F + GL +   T +    T + VL    +  P   ++ 
Sbjct: 586 AHELAGQP-FNLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKIL 644

Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            +R   S+      + L +  +   GR+        A  TGR S      QN+P  +   
Sbjct: 645 EHR-GLSKLKGTYTDKLAQLAHPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPVKTAEG 702

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      VR   +A  G  +  AD + IE R++A ++ ++
Sbjct: 703 RR-------------------------VREAFVAPAGSVIASADYSQIELRIMAHLSEDE 737

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  G D++  T A  F VA  QV+ +QR                          G
Sbjct: 738 ALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYA--------------KVINFGLIYG 783

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A        A       + Q++  
Sbjct: 784 MSSFGL------------------------------ARNLGIETKAAAAYIDRYFQRYPG 813

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V    +E   + +                              +    GR L   ++ + 
Sbjct: 814 VKHYMDETRLSAKS--------------------------KGYVETVFGRRLYLPEINSP 847

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHD 630
                       R            +Q  + D++   M+         K    +++ VHD
Sbjct: 848 NGPRRG---GAERAAINAP------MQGTAADLIKLSMVKVQEVLDAEKRATKMIMQVHD 898

Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+V E P+ +       +  +M         +PL AE      + K
Sbjct: 899 ELVFEVPEAEVEWVRVEIPRIMAGVAD--LRVPLLAEIGVGPNWDK 942


>gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
 gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062]
          Length = 980

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 107/716 (14%), Positives = 197/716 (27%), Gaps = 175/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            + +D ET +   +             ++  +              H             
Sbjct: 391 YVAVDTETDALNAMESG----------LVGVSLSCTPGKACYIPLAHVDGEGDLLGGGAL 440

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                       +LK  LE+  V  +A N  ++  VLK      + +  +  T++L+ + 
Sbjct: 441 LEGQIPLAEAITLLKPMLEDPAVLKIAQNMKYDWLVLKRY---GVEMAPFDDTMLLSYAL 497

Query: 104 GLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + +              L       +             +        Y
Sbjct: 498 DAGMGGNGMDELSQR------------WLNHTPIPFKEVCGSGKSQISFDKVPLDKATAY 545

Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  ++K L+P              E+ +      +  RG  +D  +   L+  
Sbjct: 546 AAEDADVTLRLWKILKPRLAAEEMTVVYERLERPMVATLAKMERRGISIDRQMLSLLSGE 605

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
                 +L+ E+  +    + +    ++L   LF + GL     T+    +T   VL   
Sbjct: 606 FAQGAARLESEIHDVAG-EIFNVGSPKQLGEILFGKMGLPGGKKTKTGAWSTSASVLDDL 664

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                +         + S+      + L   +N +     T   L ++ TGR S      
Sbjct: 665 AAQGHELPSKIVEWRQLSKLKSTYTDALPSFINQETGRVHTSFSLASTSTGRLSSSEPNI 724

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +    +                         +R   IA +GKKL+ AD + IE 
Sbjct: 725 QNIPIRTSEGRK-------------------------IRQAFIAEKGKKLISADYSQIEL 759

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA MA      +AF  G D++  T +  F V    +    R   K +           
Sbjct: 760 RVLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINF--------- 810

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A +           
Sbjct: 811 -----GIIYGIS------------------------------AFGLANQLGIARGEAGDY 835

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            K + ++   + +   E  +                              N  +    GR
Sbjct: 836 IKTYFERFPGIKDYMEETKKFVH--------------------------ANGYVETIFGR 869

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------A 620
              Y DV      +        R            +Q  + DI+   M+   +       
Sbjct: 870 RAHYPDVNTKNPNMRQF---YERAAINAP------IQGSAADIIRRAMVRMDEVLETANL 920

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN--PSWAKGLPLKAEGYESKRY 673
              ++L VHDE++ E P+        L    M     P+    +PLK E   +  +
Sbjct: 921 DAQMLLQVHDELIFELPEDQVDETKKLVIATMEKATEPALQLSVPLKVEAEAADNW 976


>gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15]
 gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15]
          Length = 892

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 104/707 (14%), Positives = 189/707 (26%), Gaps = 168/707 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPV 52
           T  +D ET S   L          +  ++  +  + DH        H             
Sbjct: 314 TFAVDLETTSLNPL----------EAEIVGISLSYRDHEACYIPVGHFYLGAPEQLPRRR 363

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109
           +   L   L +  +  V  N  ++  V +    +++    W  T+V +           L
Sbjct: 364 VLDALTPLLIDPKIRKVGQNLKYDYQVFRRH-GIEL-GGVWCDTMVASYLLNPVRSGHGL 421

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++               ++I+     E             +        Y   D     
Sbjct: 422 DSLAVEH--------LDHKMISY----EEVAGKGKEQVNFAQVPVEKASTYSCEDSDAAW 469

Query: 170 EIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            + +   P              E  L  +   +   G  +D+ L   L+     +  +L+
Sbjct: 470 LLHRLFLPRVAVWGMERLFFDVEMPLVPILAEMELAGVKLDLPLLGELSAGFGKQLAELE 529

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT-----ETTCQRVLSSNKKLTPQAI 274
             +  L      +    ++L   LF +  L     T      +T    L    +   +  
Sbjct: 530 GRITGL-APEPFNLNSPKQLGEVLFEKLKLPTGKKTKTKTGWSTNVEELERLAEAGHEIA 588

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +       ++      + L + +    GR+  +      + TGR S      QN+P  +
Sbjct: 589 ALILQYRGLAKLKSTYTDALPKLVQPATGRVHTSYNQ-TVTNTGRLSSSEPNLQNIPVRT 647

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   IA EG  L+ AD + IE RVLA  +
Sbjct: 648 EEGRR-------------------------IRRAFIAEEGHLLLSADYSQIELRVLAHFS 682

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++    AF   ED++  T A  F + P  VT + R                        
Sbjct: 683 EDRVFCDAFAKDEDIHTRTAAEVFGLFPEMVTPEMRRQA--------------------- 721

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                                   A NF     +     A +              +  +
Sbjct: 722 -----------------------KAINFGVIYGQGAFSLAKQLGIATKVAREFIDNYFAR 758

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           H       +       +  E G                             GR L   D+
Sbjct: 759 HPGARAFLDGC---VREAEEKGHVTTLL-----------------------GRRLPIPDI 792

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627
            +    +    ++               +Q  + DI+ E M+  T        G  +++ 
Sbjct: 793 KSANGNIRAFAQRN---------AVNYPIQGSAADIIKEAMVKVTARMRRDVVGSRLIMQ 843

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E P  +      L    M    S    +PLK +      +
Sbjct: 844 VHDELVFEVPKGEVVAMEQLVRREMEHAVS--LRVPLKVDINHGGNW 888


>gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27]
 gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395]
 gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395]
 gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27]
          Length = 934

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 466 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 515

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q  
Sbjct: 516 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 575

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 576 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 634

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 635 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 693

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 694 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 774

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 775 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 804

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 805 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 838

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 839 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 890 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930


>gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10]
 gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10]
          Length = 934

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 466 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 515

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q  
Sbjct: 516 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 575

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 576 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 634

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 635 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 693

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 694 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 774

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 775 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 804

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 805 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 838

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 839 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 890 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930


>gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
 gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1]
          Length = 930

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 100/705 (14%), Positives = 213/705 (30%), Gaps = 165/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 354 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN ++  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++   +   EY   D  VT 
Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLQQATEYAAEDADVTM 509

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 569

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 627

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 688 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +                   
Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------GLI 768

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  + +        ++    + Q++
Sbjct: 769 YGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQRY 798

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +   ++    +                              +    GR L   D+ 
Sbjct: 799 PSVQQFMTDIRAKAK--------------------------AQGYVETLFGRRLYLPDIN 832

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
           ++ +      +   R            +Q  + DI+   M+   +        ++++ VH
Sbjct: 833 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVH 883

Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E   +   F    +   + +       +PL  E    + +
Sbjct: 884 DELVFEVRSEKVAFFREQIKQHIEAAAELV--VPLIVEVGVGQNW 926


>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757]
 gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33]
 gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2]
 gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101]
 gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757]
          Length = 934

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 466 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 515

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q  
Sbjct: 516 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 575

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 576 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 634

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 635 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 693

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 694 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 774

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 775 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 804

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 805 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 838

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 839 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 890 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930


>gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
 gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
          Length = 913

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 202/701 (28%), Gaps = 162/701 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S   +T            ++  +              H             + 
Sbjct: 339 SLDTETTSLDSMT----------ARLVGISLSVKPGFAAYIPLAHHPIEVAKQLPLDHVL 388

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + LK  LEN     V  N  ++  +      + +       TL+ +              
Sbjct: 389 KKLKSWLENPAKKKVGQNLKYDSHIFANYH-IHLQGIA-HDTLLESYVLESHRRHDMDSL 446

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +L   K              E             +        Y   D  +T ++ + 
Sbjct: 447 SERLLDYKPIS----------YEEICGKGASQIGFDQIELDCATRYAAEDADITFQLHEN 496

Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K +            +  + Q +   G  +D  L    +  + ++  +L+++  
Sbjct: 497 MWPRIEKNEGLRFIYEKIEIPVSLVLQKMERNGVLIDPDLLLGQSSELALKIDELEKKAY 556

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           S+      +    ++L   LF + GL L   T +    T + VL       P    + + 
Sbjct: 557 SV-AEQSFNLNSPKQLAEILFDKLGLPLVKKTPSGAPSTSEEVLEKLALDYPLPKIILDF 615

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N +     T      + TGR +      QN+P  +      
Sbjct: 616 R-GMAKLKSTYTDKLPRMINPETGRVHTNYAQAVAVTGRLASNDPNLQNIPVKTEEGRR- 673

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G  +V AD + IE R++A ++ +   L
Sbjct: 674 ------------------------IREAFIAPAGCYIVSADYSQIELRIMAHLSDDPGLL 709

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF  G+D++  T +  F++AP +VT +QR                          G++ 
Sbjct: 710 KAFREGQDVHKATASEIFDIAPLEVTPEQRRYA--------------KVINFGLIYGMS- 754

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A       T  +     + +++  V+E
Sbjct: 755 -----------------------------AFGVASNLGISRTDAKNYIDRYFRRYPGVAE 785

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             + + Q   +                             +    GR L   ++ +    
Sbjct: 786 YMDAIRQTARE--------------------------QGYVETVFGRRLWLPEINSPNGP 819

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633
                    R            +Q  + DI+   M+         +    +++ VHDE+V
Sbjct: 820 RRQA---AERAAINAP------MQGTAADIIKLSMIAVNDWIENEQLESKLIMQVHDELV 870

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E PD +       L  LM    S    +PL A+    K +
Sbjct: 871 LEVPDKELERVRKRLPELMGQVAS--LKVPLIADVGFGKNW 909


>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6]
 gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6]
          Length = 931

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 202/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F   +         HD            + 
Sbjct: 355 AFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +VL     +++   +   T++ +              
Sbjct: 405 AQLKPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 462

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+         ++L                    ++        Y   D  VT  +  
Sbjct: 463 LALRFLQHSCISFEQL----------AGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHN 512

Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     +++            L  +   +   G  +D       +Q + V   +L+Q+ 
Sbjct: 513 RLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKA 572

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+T LF + GL         T +T + VL       P    +  
Sbjct: 573 YEIAGQP-FNMNSPKQLQTILFEQMGLPVIKKTPSGTPSTAEEVLQELALDYPLPSVIME 631

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 632 YR-GLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 690

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 691 -------------------------IRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQAL 725

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF+ G+D++  T A    V+  QV+ +QR   K +                    G++
Sbjct: 726 LDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVN--------------FGLIYGMS 771

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 772 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 801

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                          +  +    GR L   ++ +   
Sbjct: 802 QYMEDTRSNAAQ--------------------------HGYVETIFGRRLHLPEITSRNV 835

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 836 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 886

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S       +PL AE      +
Sbjct: 887 LVFEVEESCLTEIESKVQQLMESAAQ--LNVPLVAEAGHGDNW 927


>gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4]
          Length = 934

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVI 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 466 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 515

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q  
Sbjct: 516 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 575

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 576 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 634

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 635 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 693

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 694 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 774

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 775 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 804

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 805 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 838

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 839 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 890 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930


>gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236]
 gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9]
 gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33]
 gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286]
 gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236]
          Length = 906

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 330 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 379

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 380 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 437

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 438 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 487

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q  
Sbjct: 488 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 547

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 548 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 606

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 607 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 665

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 666 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 700

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 701 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 746

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 747 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 776

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 777 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 810

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 811 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 861

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 862 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902


>gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
 gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908]
          Length = 945

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 104/709 (14%), Positives = 206/709 (29%), Gaps = 170/709 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + ID ET S   +T            ++  +F  +          HD           
Sbjct: 366 DLIAIDTETTSLDYMT----------AKLVGISFAVEVGKAAYLPLAHDYLDAPEQLDFD 415

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
                LK  LE+  +  V  N  ++ ++      + +       T++ +           
Sbjct: 416 EAIAKLKPLLEDPKLKKVGQNLKYDISIFAN-VGIKLQGVA-FDTMLESYVFNSVASKHN 473

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  +             G + I+     E       +    ++        Y   D  +T
Sbjct: 474 MDDLALKY--------LGHKNISF----EEIAGKGAKQLTFNQIDLETAAPYAAEDADIT 521

Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L                 E  L  +   I  +G  +D  +    +Q + +   K
Sbjct: 522 LRLHQHLWARLEKEPKLASVFTDIELPLVQVLSKIERQGVLIDSMMLGQQSQEIAISIDK 581

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+Q+   +      +    ++L+   F + G  +   T     +T + VL       P  
Sbjct: 582 LEQDAFEIAG-ETFNLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPLP 640

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +  +R   ++      + L   +N+  GR+  +     A+ TGR S      QN+P  
Sbjct: 641 KIILQHR-SLAKLKSTYTDKLPLMVNAQSGRVHTSYHQANAA-TGRLSSSEPNLQNIPIR 698

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R   IA EGKK++ AD + IE R++A +
Sbjct: 699 TEEGRR-------------------------IRHAFIAQEGKKVLAADYSQIELRIMAHL 733

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F V  ++VT +QR   K +                 
Sbjct: 734 SQDKGLLTAFAEGKDIHKATAAEVFGVDFSEVTTEQRRRAKAVNF--------------G 779

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++    A  +                                     ++    +  
Sbjct: 780 LIYGMSAFGLARQLDI------------------------------PRGEAQKYIDTYFD 809

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +   +                                +   +    GR L    
Sbjct: 810 RYPGVLKYMEDTRAEA--------------------------ADLGYVSTLYGRRLYLPA 843

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625
           + +  +          R            +Q  + DI+ + M+N              ++
Sbjct: 844 IKDRNAMRRQA---AERAAINAP------MQGTAADIIKKAMINIASWIESETHGEITMI 894

Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + VHDE+V E            +  +M    S    + L AEG     +
Sbjct: 895 MQVHDELVFEVDSDKAEALKEQICKMMADAVS--LDVELLAEGGIGDNW 941


>gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)]
 gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)]
          Length = 906

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 330 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVI 379

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 380 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 437

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 438 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 487

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q  
Sbjct: 488 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 547

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 548 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 606

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 607 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 665

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 666 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 700

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 701 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 746

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 747 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 776

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 777 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 810

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 811 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 861

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 862 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902


>gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255]
 gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255]
          Length = 932

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 91/714 (12%), Positives = 195/714 (27%), Gaps = 174/714 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    D+             ++      +          H             
Sbjct: 346 YVAVDTETTGLNDMIV----------DLVGICLSVEIGEACYIPVGHTNGENDLFGGASL 395

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                      ++L+  L++  +  +  N  ++  +       D+ +     T++L+ + 
Sbjct: 396 CNGQINLDEALEILRPVLQDPSIIKIGQNVKYDTKIFARY---DVNLAPVDDTMLLSYAI 452

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E     + K    K L+                    + +      Y
Sbjct: 453 NGGKHNHGMDYLSERY--LNHKPISIKTLL----------GSGKSAITFDKVSINDAVNY 500

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  ++K  +P+  +          E+ L  +   +   G  VD      ++  
Sbjct: 501 AAEDADITLRLWKLFKPMLHESSVTKIYETLERPLIPVLAKMEMNGIKVDRNTLSRMSNN 560

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
                + L+ E+ +L      +    ++L   LF +  L      +T    T   VL   
Sbjct: 561 FAQSMSGLEAEIYNLAGQT-FNVGSPKQLGEILFDKLELPGGKKGKTGAYGTGVDVLEDL 619

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                +      +  + S+      + L   +N +     T   +  + TGR S      
Sbjct: 620 ASEGHELPVKVLDWRQMSKLKSTYTDALQGHINPNTGRVHTSYVISGASTGRLSSTDPNL 679

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  S +  +                         +R   IA EG  L+  D + IE 
Sbjct: 680 QNIPIRSEAGRK-------------------------IREAFIAEEGNVLLSLDYSQIEL 714

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +A      +AF  G+D++  T ++ FNV    +    R   K +           
Sbjct: 715 RILAHIAKIDTLKQAFHEGQDIHALTASQMFNVPLENMDPMVRRQAKAIN---------- 764

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A          +  
Sbjct: 765 ----FGVIYGIS------------------------------GFGLARNLRIPRKEAQSF 790

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + ++   +    +E     ++                          N  +    GR
Sbjct: 791 IDTYFERFPGIRTYMDETVSFAKE--------------------------NGYVETLFGR 824

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622
            +   ++               R            +Q  + D++   M+      +    
Sbjct: 825 KIHTSEINAK----GPQAGFAKRAAINAP------IQGTAADVIRRAMVQMPNAISHLPA 874

Query: 623 DIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E           ++ ++M     P     +PL  +      +
Sbjct: 875 KMLLQVHDELIFEVNKDALNETTEVVRNIMEKASEPVVKLDVPLVVDAGFGNNW 928


>gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a]
 gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a]
          Length = 924

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 101/709 (14%), Positives = 197/709 (27%), Gaps = 171/709 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             +  D ET +   +             ++  +   +          HD           
Sbjct: 346 DLISFDTETDALDAMR----------ARLVGISLAVEPGRAAYIPVGHDYPGAPAQLPMQ 395

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLP---S 107
            +   L+  L++     +  +  ++  VL+      + +  +   T++ +          
Sbjct: 396 QVLDALRSVLQDPAKKKLGQHGKYDLHVLRRH---GVQVQGYHDDTMLESFVLNSTATRH 452

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            + ++             G   I    K E       +  P  +        Y   D  +
Sbjct: 453 DMDSLALRY--------LGYSTI----KFEDVAGKGAKQIPFSQVGIDEASRYAAEDADI 500

Query: 168 TREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           T  +   L+P               E  L  +  +I   G  VD       +Q +     
Sbjct: 501 TLRLHHALQPQLLAEPALDSVYRGIEMPLVPVLASIEANGVRVDTDELRRQSQDLSSRML 560

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQ 272
              Q+   L      +    ++L+  LF E  L           +T +  L +       
Sbjct: 561 AAQQKATELAG-RSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIADQHEL 619

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              +   R   ++      + L E +N D GR+  +    GA+ TGR S      QN+P 
Sbjct: 620 PRVILEYR-GLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGAA-TGRLSSSDPNLQNIPI 677

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +                              +R   +A EG +L+ AD + IE R++A 
Sbjct: 678 RTEDGRR-------------------------IRRAFVAPEGFQLLAADYSQIELRIMAH 712

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ +   ++AFE G D++  T A  F     +VT ++R   K +                
Sbjct: 713 LSEDPGLVRAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINF-------------- 758

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++                                  A          +     + 
Sbjct: 759 GLMYGMS------------------------------AFGLARNLGIDRGQAQDYVALYF 788

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  V +    + Q                                 +    GR L   
Sbjct: 789 SRYPGVRDFMERMRQQARD--------------------------QGYVETLFGRRLYLN 822

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625
           D+      L        R            +Q  + DI+   M++  +      A   ++
Sbjct: 823 DIHARNQGLR---AGAERAAINAP------MQGTAADIIKRAMVDVDQWLRDSGAPARMI 873

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDE+V ET  +   +    +   M+        +PL  +      +
Sbjct: 874 LQVHDELVFETESSFVEDLRLQVVERMSQAAK--LRVPLVVDTGVGNNW 920


>gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11]
 gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11]
          Length = 932

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 97/705 (13%), Positives = 200/705 (28%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             +I  +F  ++         HD            + 
Sbjct: 356 AFDTETDSLDYMV----------ANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           + LK  LE+ +   V  N  ++ +VL    ++++   +   T++ +           + +
Sbjct: 406 EQLKPYLEDDNKAKVGQNLKYDASVLARY-DIEMKGIK-FDTMLESYVYNSVAGKHNMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                 I+     E       +    ++ A      Y   D  +T  +
Sbjct: 464 LALRY--------LQHNTISF----EEIAGKGKKQLTFNQIALEQAAPYAAEDADITLRL 511

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L                 E  L  +   +  +G  +D  L    +  +     +L++
Sbjct: 512 HHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDDMLLSAQSLEIGQRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
               +      +    ++L+T LF +  L +   T +    T + VL       P    +
Sbjct: 572 AAFEVAG-EEFNMNSPKQLQTILFEKMELPVIKKTPSGAASTNEEVLQELALDYPLPKLI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L + +N       T      + TGR S      QN+P  +   
Sbjct: 631 LEYR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 689

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   +A  G K++  D + IE R++A ++ ++
Sbjct: 690 RR-------------------------IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDK 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A    V+  +VT + R   K +                    G
Sbjct: 725 ALLAAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINF--------------GLIYG 770

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    A  +                                     +     + +++  
Sbjct: 771 MSAFGLAKQI------------------------------GIPRGEAQDYMNVYFERYPG 800

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +   E      +                             +    GR L   ++   
Sbjct: 801 VMQYMEETRLLATE--------------------------QGYVETLYGRRLHLPEINAR 834

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVH 629
                   +   R            +Q  + DI+ + M+          K   ++++ VH
Sbjct: 835 NGMRR---KAAERAAINAP------MQGTAADIIKKAMILVDEWVETEGKDRVNLLMQVH 885

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +       + +  LM         +PL AE      +
Sbjct: 886 DELVFEVKEDALDEVTTKVRELMEQAVQ--LDVPLVAEAGFGNNW 928


>gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens]
 gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens]
          Length = 896

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 200/700 (28%), Gaps = 162/700 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56
            ID ET +                 ++  +   ++         H           +   
Sbjct: 324 CIDTETTNLD----------VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTA 373

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115
           LK  LEN  +  +  N  ++ +VLK    + +   R+  T++ +      +        A
Sbjct: 374 LKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDSLA 431

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           LK    K    ++                +     +      G Y   D  +T  +  +L
Sbjct: 432 LKYLGYKTISYED----------VAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKL 481

Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            P+  K               +   +   G  +D  +       +  +   L+QE   L 
Sbjct: 482 YPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAIQLA 541

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L+  LF E  L           +T + VL            +   R  
Sbjct: 542 G-KAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAVILEYR-S 599

Query: 283 ASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            S+     ++ L + +N    R+  +     A+ TGR S      QN+P  S        
Sbjct: 600 LSKLVSTYIDALPKRINPKTHRVHTSYNQAVAA-TGRLSSSDPNLQNIPIRSEEGR---- 654

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R+  IA EG  ++ AD + IE R++A ++ +   L+A
Sbjct: 655 ---------------------LIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRA 693

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D++  T +  F      V+K+QR   K +                    G++   
Sbjct: 694 FANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNF--------------GLIYGMSAFG 739

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  +                                     +     + +++ +V E  
Sbjct: 740 LAKQI------------------------------GVERQDAQHYIDTYFRRYPKVLEYM 769

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +   Q                             +    GR L   ++ +      
Sbjct: 770 ERTRKQAHQ--------------------------LGYVETLFGRRLYLPEINSRNLMR- 802

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIVLTVHDEIVC 634
              +   R    G       +Q  + DI+ + M+  +            +++ VHDE+V 
Sbjct: 803 --QKAAERTAINGP------MQGTAADIIKKTMLAVSNWEHSQKNPSAKMIMQVHDELVF 854

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E          ++++ LM         +PL         +
Sbjct: 855 EVRKEAVEECRAIIHKLMEQTVK--LSVPLVVSIGTGSNW 892


>gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1]
 gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1]
          Length = 932

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 103/705 (14%), Positives = 205/705 (29%), Gaps = 164/705 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52
            +  D ET S   +             ++  +F  ++         HD +          
Sbjct: 354 VIAFDTETDSLDYMV----------ANLVGLSFAIEEGVAAYVPVAHDYIGAPEQLDRQW 403

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKA 111
           + + LK  LE+  +  V  N  ++ +VL    ++++   +   T++ +            
Sbjct: 404 VLEQLKPLLEDDAIAKVGQNLKYDASVLARY-DIELKGIK-FDTMLASYVYNSVGGKHDM 461

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              AL+                   E            ++        Y   D  VT  +
Sbjct: 462 DSLALRFLQHS----------CISFEQIAGKGKAQLTFNQIDLEQASPYAAEDADVTFRL 511

Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +RL     K +            L  +   I   G  +D  L    +Q +     +L+Q
Sbjct: 512 HQRLNAELEKNEALNRIYQDIEVPLVPVLSRIERTGVLIDDMLLGAQSQEIAARLDELEQ 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T  F + GL +   T +    T + VL       P    +
Sbjct: 572 KAFEIAGQ-EFNLSSPKQLQTIFFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L + +N +     T      + TGR S      QN+P  +   
Sbjct: 631 LEYR-GLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 689

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G K++  D + IE R++A ++G++
Sbjct: 690 RR-------------------------IRQAFIAPHGWKILAVDYSQIELRIMAHLSGDK 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF+ G+D++  T A    V   QVT +QR   K +                    G
Sbjct: 725 ALLDAFKNGKDIHAATAAEIIGVDIDQVTSEQRRRAKAINF--------------GLIYG 770

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    +                                        ++    + +++  
Sbjct: 771 MSAFGLSKQ------------------------------LGIPRGEAQQYMDTYFERYPG 800

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +   +      +                             +    GR L   ++ + 
Sbjct: 801 VMQYMEDTRSLAAE--------------------------KGYVETIFGRRLHLPEIKSR 834

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVH 629
                   +   R            +Q  + DI+ + M+          +    +++ VH
Sbjct: 835 NGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWVQAEGEGKVKLLMQVH 885

Query: 630 DEIVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V      +     S +  LM S       +PL AE      +
Sbjct: 886 DELVFEVESSSLSEIESKIQKLMESAAE--LDVPLVAEAGHGDNW 928


>gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145]
 gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145]
          Length = 924

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 99/706 (14%), Positives = 204/706 (28%), Gaps = 164/706 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
            +  D ET S           Y E   ++  +F   +         HD            
Sbjct: 344 VIAFDTETTSLN---------YME-AQLVGVSFSIAEGEAVYIPVAHDYVGVEKQVDRDW 393

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
           + +VLK  LE++ +  V  N  ++  +L+    + +   +   T++ +       +    
Sbjct: 394 LLKVLKPLLEDSSIAKVGQNLKYDAHILRRY-GIKLRGIK-NDTMLASYVFNSVGS---- 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
               +     +     L  +  K E       +    ++        Y   D  +T  + 
Sbjct: 448 ----RHDMDTLSLQY-LNHKPIKFEEIAGKGAKQLTFNQIELAQAAPYAAEDADITLRLH 502

Query: 173 KRLEPLSSKEQEL------------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             L     +  E               +   + + G  VD  +    ++ +  +  +L+Q
Sbjct: 503 HILWDKVHQTGEQLASVLTDIEVPLVSILTDMEEYGVKVDAEMLGKQSEEIANKLDELEQ 562

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+  LF +  L +   T     +T + VL       P    +
Sbjct: 563 KAFEIAG-EEFNLGSPKQLQQILFEKLELPVIKKTPKGAPSTAEEVLQELAHDYPLPDVI 621

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   ++      + L   +N D     T      + TGR S      QN+P  +   
Sbjct: 622 LQHR-SLAKLKSTYTDKLPRMINPDTGRVHTSYQQAVAATGRLSSTEPNLQNIPIRTPEG 680

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      VR   +A EG  +V  D + IE R++A ++ + 
Sbjct: 681 RR-------------------------VRQAFVAEEGFTVVAIDYSQIELRIMAHLSQDA 715

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  G+D++  T +  F  +  +VT +QR   K +                    G
Sbjct: 716 SLLRAFAQGQDIHRATASEVFGCSLEEVTDEQRRRAKAVNF--------------GLIYG 761

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    +  +                                     +     + ++   
Sbjct: 762 MSAFGLSRQLDI------------------------------PRHEAQAYMDKYFERFPG 791

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E      +  ++                             +    GR L   ++  +
Sbjct: 792 VLEYMENTRETAKK--------------------------QGYVSTLFGRRLPLPEIKAS 825

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY----DIVLTV 628
                    +               +Q  + DI+   M+       + G      +++ V
Sbjct: 826 NGARRKAAER---------AAINAPMQGTAADIIKRAMIKVGDWIDEKGCQSDVRMLMQV 876

Query: 629 HDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E       + A  L  +M         +PL AE      +
Sbjct: 877 HDELVFEIRTEHAESYAKALADVMGEAAD--LDVPLLAEYGFGANW 920


>gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39]
 gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39]
          Length = 934

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 202/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 466 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 515

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q  
Sbjct: 516 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 575

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 576 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 634

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 635 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 693

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 694 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 774

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 775 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 804

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +   
Sbjct: 805 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNV 838

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 839 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 889

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 890 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930


>gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199]
 gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199]
          Length = 943

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 112/720 (15%), Positives = 209/720 (29%), Gaps = 176/720 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
           T+  D ET S   +             ++  +              H             
Sbjct: 347 TVAFDTETTSLDCMR----------ADLVGVSLAVAPGKACYIPLRHVGRQAQGDLLGAG 396

Query: 50  -----DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
                   +P       LK+ LEN  V  +AHN+ ++  VL    N  I +     T+ L
Sbjct: 397 PAEEAPKQIPFDTAMARLKDLLENPAVLKIAHNAKYDALVLSRPKNGGITVAPIDDTMCL 456

Query: 100 ARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           +           L  +          +  G   I    K E                   
Sbjct: 457 SYVLEGGLHGHGLDELAT--------LHLGHTNI----KFEEVCGKGKTQIGFAEAPIDK 504

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQEL----------WYLDQTINDRGYCVDVALAHT 206
              Y   D  VT  +   L+P    E+              +   +   G  VD  +   
Sbjct: 505 ACAYAAEDADVTFRLHALLKPRLVPERMTTVYETLERALIPVLVGMERNGIKVDPTILRD 564

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262
           ++         L+ E+         +    ++L   LF + GL      +T    T   V
Sbjct: 565 MSADFAKRLVTLEGEIHEQAG-EPFNVGSPKQLGEILFDKMGLAGGKKGKTGAYGTGADV 623

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L +         +   +  + ++      + LVE +N++     T   +  + TGR S  
Sbjct: 624 LETLAAEGSDFARKVLDWRQIAKLKSTYTDALVETINAETGRVHTSYSMVGAATGRLSSN 683

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P  +    +                         +R+  +A  G  L+  D +
Sbjct: 684 DPNLQNIPIRTEEGRK-------------------------IRTAFVAEPGNVLLSVDYS 718

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A +AG +   KAF  G D++  T +  F V  +++T D R   K +       
Sbjct: 719 QIELRLVADIAGIESLRKAFLDGIDIHAQTASEVFGVPLSEMTPDIRRKAKAINF----- 773

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G++    A  + T+ A                               
Sbjct: 774 ---------GIIYGISGFGLARQLSTSQA------------------------------E 794

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +    A+ ++   + +   E+     +                          +  +  
Sbjct: 795 AQAYINAYFERFPGIRDYMTEMKTFARE--------------------------HGFVET 828

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617
             GR +  + + +    +        R            +Q  + D++   M+       
Sbjct: 829 KFGRKVHIQAIRDKNPAMRNF---GERAAINAP------IQGTAADVIKRAMVRLPVALD 879

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMT--SNPSWAKGLPLKAEGYESKRY 673
             ++   ++L VHDE++ E P+ D    S L   +M   + P     +PL AE    K +
Sbjct: 880 KAQSKARMLLQVHDELLFEVPEDDVEATSALVREVMEGAAAPQLNLSVPLIAEAGWGKSW 939


>gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1]
 gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1]
          Length = 928

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 205/707 (28%), Gaps = 172/707 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET +   L+            ++  +F             HD            + 
Sbjct: 352 AFDLETDALDTLS----------ANIVGISFAIAPGEAAYLPVAHDYLDAPEQLDRAAVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110
             LK  LE+     V  N  ++R VLK     DI +      T++ +           + 
Sbjct: 402 AQLKPLLEDDSAWKVGQNLKYDRGVLKNY---DIELAGIKFDTMLESYILNSVVGKHDMD 458

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           ++                L  +    +            ++ A      Y   D  VT +
Sbjct: 459 SLAAR------------WLNHKTVTFQEIAGKGKNQLTFNQIALEQASHYAAEDADVTLQ 506

Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  ++ P               E  L  +   I   G  +D A+    ++ +     +L+
Sbjct: 507 LHLKMWPELEKEAGPRKVFEQIEMPLLTVISRIERNGVLIDQAILAQHSKELTARLAELE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
            +   L      +    ++L+  LF + G+     T     +T + VL+      P    
Sbjct: 567 LKAHELAG-EPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKV 625

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   S+      + L   +N   GR+  +      + TGR S      QN+P  + 
Sbjct: 626 ILEHR-GLSKLKSTYTDKLPLMINPLSGRVHTSYHQAV-TATGRLSSADPNLQNIPVRND 683

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   +A++G ++V AD + IE R++A ++ 
Sbjct: 684 EGRR-------------------------IRQAFVAAKGYRIVAADYSQIELRIMAHLSQ 718

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  GED++  T +  F V   +V+ +QR   K +                   
Sbjct: 719 DKGLLDAFAQGEDIHRATASEVFGVPLDKVSAEQRRSAKAINF--------------GLI 764

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  + +        ++    + +++
Sbjct: 765 YGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFERY 794

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V        Q      +     I                         GR L   D+ 
Sbjct: 795 PGVLRYMENTRQLA--ASKGYVETIE------------------------GRRLWLPDIK 828

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLT 627
           ++ +      +   R            +Q  + DI+   M+               +++ 
Sbjct: 829 SSNAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDAWLEQQNDNSVRMIMQ 879

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E        A   +  LM  +      +PL  E      +
Sbjct: 880 VHDELVFEVKAEAVEAASQKIRALMEGSVQ--LDVPLLVEVGVGDNW 924


>gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
 gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B]
          Length = 935

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 96/716 (13%), Positives = 200/716 (27%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    ++             ++                 H             
Sbjct: 349 YVAVDTETTGLNEMI----------ADLVGICLCVVPGQACYVPLTHKAGNSDDLFGSDD 398

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                       ++LK  LE+  +  +  N  ++  +        I I     T++L+ +
Sbjct: 399 LAEGQMPLETALEMLKPVLEDDAILKIGQNMKYDAKIFARN---GIDITPIDDTMLLSYA 455

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  + E   L  Q +   K L+                    R        
Sbjct: 456 LHGGMHGHGMDTLSERY-LDHQPIP-IKSLL----------GSGKSAITFDRVPIDDATP 503

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  ++++ +P   ++Q           L  +   +   G  VD      ++ 
Sbjct: 504 YAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQNGIKVDRDTLSRMSN 563

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L      +    ++L   LF +  L      +T    T   +L  
Sbjct: 564 AFSQKMAALEAEIHELAG-ESFNVGSPKQLGEILFDKLSLPGGKKGKTGAYATGADILED 622

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVF 324
                    +V + R   S+      + L E ++ + GR+  +    GA+ TGR +    
Sbjct: 623 LATEHELPARVLDWRQ-LSKLKSTYTDALQEHIHPETGRVHTSYLQTGAN-TGRLASSDP 680

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  S                              +R   +A EG  L+  D + I
Sbjct: 681 NLQNIPVRSEEGRR-------------------------IREAFVAEEGNVLLSLDYSQI 715

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA +AG     +AF  G D++  T +  F+V   ++T + R   K +         
Sbjct: 716 ELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPEIRRKAKAIN-------- 767

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G++                                  A          +
Sbjct: 768 ------FGVIYGIS------------------------------GFGLARNLRIPRGEAQ 791

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                + ++   + +  ++     +                           +  +    
Sbjct: 792 GFIDRYFERFPGIRQYMDDTVNFAKD--------------------------HGYVQTLF 825

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA 620
           GR +   ++    +          R            +Q  + D++   M+         
Sbjct: 826 GRKIHTPEI----AAKGPRASFAKRAAINAP------IQGTAADVIRRAMVRMPDAIAHL 875

Query: 621 GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
              ++L VHDE++ E P+   +   S+   +M      A    + L  +    + +
Sbjct: 876 PARMLLQVHDELLFEVPEDHVDETISVAREIMEGAADPAVHMDVKLVVDAGRGQNW 931


>gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088]
 gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088]
          Length = 908

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 111/706 (15%), Positives = 199/706 (28%), Gaps = 167/706 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
           T   D ET S           Y E   ++  +F  +          HD            
Sbjct: 331 TFAFDTETNSLD---------YME-AELVGLSFCAEPGVACYVPVAHDYPGAPDQLSRDY 380

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109
           +   LK+ LE+     V  +  ++  VL     + +       T++ +           +
Sbjct: 381 VLNQLKDLLEDPQYQKVGQHLKYDMHVLANY-GIALRGFA-GDTMLESYVLDSVGGRHDM 438

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++ E              L  R    E       +    ++ +      Y   D  +T 
Sbjct: 439 DSLAERY------------LGRRTISFEDVAGKGAKQLTFNQVSLEQAVPYACEDADITW 486

Query: 170 EIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++++ L                 E  L  + Q+I   G  V   +    + ++     +L
Sbjct: 487 QLYEYLTNQLTATESLHTVYTDIELPLAPVLQSIERNGALVSREILQQQSSVIGARLIEL 546

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274
           + E   L      +    ++L   LF E  L +   T     +T + VL       P   
Sbjct: 547 EAEAHDLAGRP-FNLGSTKQLGEILFDELKLPIIKKTPKGAPSTGEEVLVELALDYPLPK 605

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +   R   ++      + L   +N       T      + TGR S      QN+P  S 
Sbjct: 606 VLLEYR-GLAKLKSTYTDKLPTLINPRTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRSV 664

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA E   +V AD + IE R++A ++G
Sbjct: 665 EGRA-------------------------IRKAFIAPENHVIVAADYSQIELRIMAHLSG 699

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L AF  G D++  T A  F VA  +VT DQR   K +                   
Sbjct: 700 DAGLLTAFNEGLDVHAATAAEVFGVALDEVTSDQRRSAKAINF--------------GLI 745

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    A  +                                     +     + Q++
Sbjct: 746 YGMSAFGLAKQLHI------------------------------GRAESQAYIDTYFQRY 775

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +  +   Q   +                             +    GR L   ++ 
Sbjct: 776 PGVLDYMDRTRQGAHE--------------------------RGYVETIFGRRLYLPEIN 809

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
                         R            +Q  + DI+ + M+   +          +++ V
Sbjct: 810 ARNKMRVQA---AERTAINAP------MQGSAADIIKKAMLAVDRFLRDSSLESKMIMQV 860

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E P  +     + +   M S    A  +PL  E      +
Sbjct: 861 HDELVFEVPKHELDALRAGVITAMESAAQLA--VPLLVEVGLGDNW 904


>gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021]
 gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021]
          Length = 1004

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 103/706 (14%), Positives = 203/706 (28%), Gaps = 173/706 (24%)

Query: 21   ICKYAEDVCVILFAFGFDDH---------PVELWDCVH------------------DPVM 53
                A    ++ F+    D+                 H                      
Sbjct: 415  TSPDAMRADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPGRET 474

Query: 54   PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
               LKE LE+  V  V  N  +   V+K      I +  +  T++++           + 
Sbjct: 475  LSRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTMLMSYVLDAGNGAHGMD 531

Query: 111  AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            ++ E           G   IA     +        +             Y   D  +   
Sbjct: 532  SLAERW--------LGHTPIAY----KDVTGTGRSSLTFDFVDIDKATAYAAEDADIALR 579

Query: 171  IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            ++  L+P              E+ L  +   + +RG  VD  +   L+  +      L+ 
Sbjct: 580  LWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALED 639

Query: 221  ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
            E+  L      +    ++L   LF + GL     T+    +T  +VL           + 
Sbjct: 640  EIYRLAG-ETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRK 698

Query: 277  FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              +  + ++      + L   ++ + +   T   + A+ TGR S      QN+P  +   
Sbjct: 699  IVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEG 758

Query: 337  EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             +                         +R+  +A+ G KLV AD + IE RVLA +A   
Sbjct: 759  RK-------------------------IRTAFVATPGHKLVSADYSQIELRVLAHVADIP 793

Query: 397  WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
               +AF  G D++  T +  F V    +  + R   K +   +                G
Sbjct: 794  QLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGII--------------YG 839

Query: 457  LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
            ++    A+ +                                  +      K + ++   
Sbjct: 840  ISAFGLANQLSIE------------------------------RSEAGDYIKRYFERFPG 869

Query: 517  VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            + +          +                          N  +    GR   Y D+ ++
Sbjct: 870  IRDYMENTKAFARE--------------------------NGYVETIFGRRAHYPDIRSS 903

Query: 577  RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
               +        R            +Q  + DI+   M+         K    ++L VHD
Sbjct: 904  NPSMR---AFNERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHD 954

Query: 631  EIVCETPDTDEF-NASMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673
            E++ E  D +      ++  +M +    A    +PLK +   +  +
Sbjct: 955  ELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000


>gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR]
 gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR]
          Length = 921

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 103/708 (14%), Positives = 198/708 (27%), Gaps = 166/708 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET S           Y E   ++  +              HD           
Sbjct: 340 DYFAFDTETTSLN---------YME-AELVGVSLAMAPGEAVYIPVGHDYMEAPDQVGRD 389

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSALK 110
            + + LK  LE      V  N  ++  +L+      I +   +  T++ +       +  
Sbjct: 390 WLLEQLKPLLEAEKPQKVGQNLKYDSHILRRY---KIRLAGILNDTMLASYVFNSVGS-- 444

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
                 +     +     L  +    E       +    ++ A    G Y   D  +T  
Sbjct: 445 ------RHDMDTLSL-HYLNHKTISFEDIAGKGAKQLTFNQIALEQAGPYAAEDADITYR 497

Query: 171 IFKRLEPL------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +   L               +  E  L  +   +   G  +D  L    +Q +  +   L
Sbjct: 498 LHDVLWNKVKETGSELQSVLTDIEVPLVPILCDMEQYGVRIDANLLGKQSQEIAEKLDAL 557

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274
           +++   +      +    ++L+   F +  L +   T     +T + VL       P   
Sbjct: 558 EKKAFEIAG-EEFNLGSPKQLQRIFFEKLELPIVKKTPKGAPSTAEEVLHELAHDYPLPD 616

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R   S+      + L + +N D     T      + TGR S      QN+P  + 
Sbjct: 617 VILQHR-GLSKLKSTYTDKLPKMINPDTGRVHTSYQQAVTATGRLSSTDPNLQNIPIRTA 675

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR   I  +G K+V  D + IE R++A ++ 
Sbjct: 676 EGRR-------------------------VRQAFIPEQGYKIVAIDYSQIELRIMAHLSQ 710

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  LKAF  G D++  T A  F     +V+ DQR   K +                   
Sbjct: 711 DESLLKAFAEGLDIHRATAAEVFGCKADEVSNDQRRQAKAVNF--------------GLI 756

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  A +        +     + ++ 
Sbjct: 757 YGMS------------------------------AFGLARQLGIARHEAQHYMDKYFERF 786

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V     +  +  ++                             +    GR L   D+ 
Sbjct: 787 PGVLRYMEDTRKQAKE--------------------------QGYVKTLFGRRLPLPDIK 820

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--------AGYDIVL 626
            +        +   R            +Q  + DI+ + M+                +++
Sbjct: 821 ASNGARR---KGAERAAINAP------MQGTAADIIKKAMLKVADWIDSNNCQDDVRMLM 871

Query: 627 TVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE+V E  ++        L  +M    S    +PL AE  +   +
Sbjct: 872 QVHDELVFEIKESKLTDYIEQLTEVMEKAAS--LDVPLIAEAGKGNNW 917


>gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2]
 gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587]
 gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2]
          Length = 886

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 105/703 (14%), Positives = 203/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 310 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 359

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 360 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 417

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 418 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 467

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q  
Sbjct: 468 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 527

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 528 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 586

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 587 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 645

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 646 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 680

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 681 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 726

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 727 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 756

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 757 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 790

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 791 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 841

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL A+      +
Sbjct: 842 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVADAGHGDNW 882


>gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83]
 gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83]
          Length = 1004

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 103/706 (14%), Positives = 203/706 (28%), Gaps = 173/706 (24%)

Query: 21   ICKYAEDVCVILFAFGFDDH---------PVELWDCVHDP------------------VM 53
                A    ++ F+    D+                 H                      
Sbjct: 415  TSPDAMRADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPVREA 474

Query: 54   PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
               LKE LE+  V  V  N  +   V+K      I +  +  T++++           + 
Sbjct: 475  LSRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTMLMSYVLDAGNGAHGMD 531

Query: 111  AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            ++ E           G   IA     +        +             Y   D  +   
Sbjct: 532  SLAERW--------LGHTPIAY----KDVTGTGRSSLTFDFVDIDKATAYAAEDADIALR 579

Query: 171  IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            ++  L+P              E+ L  +   + +RG  VD  +   L+  +      L+ 
Sbjct: 580  LWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALED 639

Query: 221  ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
            E+  L      +    ++L   LF + GL     T+    +T  +VL           + 
Sbjct: 640  EIYRLAG-ETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRK 698

Query: 277  FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              +  + ++      + L   ++ + +   T   + A+ TGR S      QN+P  +   
Sbjct: 699  IVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEG 758

Query: 337  EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             +                         +R+  +A+ G KLV AD + IE RVLA +A   
Sbjct: 759  RK-------------------------IRTAFVATPGHKLVSADYSQIELRVLAHVADIP 793

Query: 397  WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
               +AF  G D++  T +  F V    +  + R   K +   +                G
Sbjct: 794  QLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGII--------------YG 839

Query: 457  LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
            ++    A+ +                                  +      K + ++   
Sbjct: 840  ISAFGLANQLSIE------------------------------RSEAGDYIKRYFERFPG 869

Query: 517  VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            + +          +                          N  +    GR   Y D+ ++
Sbjct: 870  IRDYMENTKAFARE--------------------------NGYVETIFGRRAHYPDIRSS 903

Query: 577  RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
               +        R            +Q  + DI+   M+         K    ++L VHD
Sbjct: 904  NPSMR---AFNERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHD 954

Query: 631  EIVCETPDTDEF-NASMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673
            E++ E  D +      ++  +M +    A    +PLK +   +  +
Sbjct: 955  ELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000


>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 943

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 103/713 (14%), Positives = 198/713 (27%), Gaps = 174/713 (24%)

Query: 1   MATL------FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---- 50
           M  +       +D ET S   L             ++  +              H     
Sbjct: 361 MKKIEAAELTAVDTETTSLDALA----------AELVGISLSVKPGEACYIPVAHRNGEA 410

Query: 51  ----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNG- 104
                ++ + +K  LE++    V  N  ++  +       DI +      TL+ +     
Sbjct: 411 QLSRELVLKRMKSWLESSSHLKVGQNLKYDIHIFANY---DIHLEGIAFDTLLESYVLES 467

Query: 105 -LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            LP  + ++ E           G + I      E             +   ++   Y   
Sbjct: 468 HLPHNMDSLAERH--------LGLKTIRY----EEVCGKGVHQIGFDQVDLQIATNYAAE 515

Query: 164 DVTVTREIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           D  +T  +   L P               E     +   +   G  +D AL     Q V 
Sbjct: 516 DADITLRLHLELWPQIQASPGLLYVYEKIEMPAMLVLGIMERNGIRIDSALLAKQGQQVG 575

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268
               +L+ E+  L      + +  +++   LF +  L +   T +    T + VL    +
Sbjct: 576 KRLLELEGEIHRLAGQP-FNIQSPKQIAEILFGQLELPIVKKTPSGAPSTDEEVLQKLAE 634

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQ 327
             P   ++ + R   ++     +  L    +   GR+        A  TGR +      Q
Sbjct: 635 DYPLPARILDYR-SLAKLMSTYIEKLPRMADPKTGRIHTNFSQATA-VTGRLASSDPNLQ 692

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +                              +R   I ++G KL+ AD + IE R
Sbjct: 693 NIPVRTEEGRR-------------------------IREAFIPADGCKLLSADYSQIELR 727

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A +A ++  L AF+ G+D++  T A  F +    V  +QR                  
Sbjct: 728 IMAHIAEDENLLTAFKEGKDVHQATAAEIFGIPLDDVNSEQRRYA--------------K 773

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++                                  A        A +   
Sbjct: 774 VINFGLIYGMS------------------------------AFGLAGNLGIERAAAQNYI 803

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             +  ++  V++          +                          N  +    GR 
Sbjct: 804 AKYFDRYPGVAQYMERTRLEARE--------------------------NGYVETVFGRR 837

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621
           L   ++  +            R            +Q  + D++   M+            
Sbjct: 838 LWLPEIKGSNGPRRQ---GAERAAINAP------MQGTAADLIKLAMIAVEDWLEKEQLK 888

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++L VHDE+V + P  +     + L  LM         +PL         +
Sbjct: 889 TKMLLQVHDELVFDVPLDEIDLLQAKLPDLMCHVAQ--LKVPLVVSIGIGDNW 939


>gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
 gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2]
          Length = 939

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 103/714 (14%), Positives = 204/714 (28%), Gaps = 173/714 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-------VELWDCVHD---- 50
               ID ET S            A +  ++  +F + +                HD    
Sbjct: 353 DVFAIDTETTSLN----------AMEAKIVGVSFAYAEKKDQAWQNFAAYVPLTHDYDGA 402

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                   +   LK  LEN  +  V  N  ++  + K    +++    +  T++ +    
Sbjct: 403 PEQLPIQEVLAKLKPLLENPAIKKVGQNFKYDWHIFKNA-GIEVQGMAY-DTMLESYCFN 460

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  +                L       +       + K  ++        Y 
Sbjct: 461 SVATRHNMDDLALTY------------LNHSTIHFKDIAGTGKKQKTFNQIELETASPYA 508

Query: 162 KGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
             D  +T ++ + L P               E  L  +   +   G  +D  +    +  
Sbjct: 509 AEDADITLQLHQTLLPKLQAEPTLYKVFEEIEMPLMPVLAKMERNGVLIDRQMLADQSYE 568

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSN 266
           +  + T+L+Q+   +      +    ++L+  LF    L           +T + VL   
Sbjct: 569 LGQKLTELEQKAHLIAGTP-FNLNSSKQLQEVLFERLELPIVKKTPKGQPSTAEPVLVQL 627

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
            +   +   +       ++      ++L + +N       T      + TGR S      
Sbjct: 628 AEDGHEMPNLILEYRSLAKLKSTYTDSLPKQINQQTGRVHTSYQQAVASTGRLSSTEPNL 687

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  S                              +R   IA  G +L+ +D + IE 
Sbjct: 688 QNIPIRSAEGRR-------------------------IRQAFIAQPGYRLMASDYSQIEL 722

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A ++G+   LKAF  G+D++  T A  FN+   +VT +QR   K +           
Sbjct: 723 RIMAHLSGDASLLKAFAEGKDIHQATAAEIFNMPLEEVTSEQRRSAKAVNF--------- 773

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A +        +  
Sbjct: 774 -----GLIYGMS------------------------------AFGLAKQLNISRGLAQEY 798

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              +  ++  V+       +  +QT                            +    GR
Sbjct: 799 INLYFARYPGVANYMESTKENAKQT--------------------------GYVETLMGR 832

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------A 620
            L   D+      L        R            +Q  + DI+   M+   +       
Sbjct: 833 RLYLPDINAKNGQLRQY---AERTAINAP------MQGTAADIIKTAMVKMQQWLDQTPC 883

Query: 621 GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +++ VHDE+V E  + D   A   +  +M +       +PL  E  +   +
Sbjct: 884 DIKMLMQVHDELVFEVAEADMDQARKEIKTIMEAALK--LDVPLIVEIGDGLNW 935


>gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
 gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas sp. SM9913]
          Length = 911

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 107/703 (15%), Positives = 200/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F             HD            + 
Sbjct: 335 AFDTETTSLEYMK----------AQLVGMSFAVKAGEAAYLPIAHDYPGAPEQLSLEFVM 384

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           Q L   L + +   V  N  ++++VL      ++   +   T++ +              
Sbjct: 385 QKLGPILADENKAKVGQNLKYDKSVLANA-GYELNGIK-FDTMLESYVFNSVGTRHDMDS 442

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    ++                +    ++        Y   D  +T  + +
Sbjct: 443 LALKYLGHKNISFED----------IAGKGKKQLTFNQIELEKAAPYAAEDADITLRLHQ 492

Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L  +   I   G  +D  +  T +Q +     +L++E 
Sbjct: 493 VLWPKLEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLATHSQRLGERLLELEKEA 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF +  L +   T     +T + VL       P    +  
Sbjct: 553 FEIAG-EPFNLSSPKQLQVLLFEKLELPVIKKTPKGAPSTAEEVLQELAHDYPLPKVIIE 611

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+      + L   +N   +   T      + TGR S      QN+P  S     
Sbjct: 612 HR-GLSKLKSTYTDKLPLIVNERTQRVHTSYHQAVTATGRLSSSDPNLQNIPIRSEEGRR 670

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA++G K+V AD + IE R++A ++ ++  
Sbjct: 671 -------------------------IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGL 705

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G D++  T A  F V   +VT D R   K +                    G++
Sbjct: 706 LSAFANGLDVHSATAAEVFGVELEEVTSDMRRKAKAVN--------------FGLIYGMS 751

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + ++   V 
Sbjct: 752 ------------------------------AFGLARQLDVPRHEAQHYIDKYFERFPGVL 781

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E      +   +                          N  +    GR L   ++     
Sbjct: 782 EYMETTREKAAE--------------------------NGYVETIFGRRLHLPEINARNG 815

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M++              +++ VHDE
Sbjct: 816 ARR---KGAERAAINAP------MQGTAADIIKKAMLSVHAWVNQQAPNTVKLLMQVHDE 866

Query: 632 IVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E   +  E     +  LM+        +PL  E  E   +
Sbjct: 867 LVFEIKTECTEQYTKQICELMSQAAQ--LDVPLIVEADEGDNW 907


>gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2]
 gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2]
          Length = 935

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 97/714 (13%), Positives = 198/714 (27%), Gaps = 175/714 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            + +D ET S  ++             ++  +              H             
Sbjct: 350 VVAVDTETTSLDEMR----------AELVGISLCVQAGTACYIPLGHRQGGGDLFGSSAL 399

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                       +LK  LE+  +  +  N  ++  +L     L I +     T++++ + 
Sbjct: 400 TEGQMPVAQALALLKPVLEDDAILKIGQNMKYDAKILAR---LGISVAPIDDTMLMSYAM 456

Query: 104 GL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   + A+ +           G + IA     +             R        Y
Sbjct: 457 HAGLNSHGMDALSDQY--------LGHQPIAI----KPLLGSGKSAVTFDRVPIDQAVAY 504

Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  +++  +P   +             L  +   +   G  VD      ++  
Sbjct: 505 AAEDADITLRLWELFKPQLHRAHVTTVYETLERPLVPVLAQMEMAGIQVDRDTLSRMSNA 564

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +   L+ E+  +      +    ++L   LF +  L   +  +T    T   VL   
Sbjct: 565 FAQKMAGLEAEIHDMAG-EKFNVGSPKQLGEILFDKMSLPGGEKGKTGAYATGADVLEDL 623

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   +V + R   S+      + L + +N +     T   L  + TGR +      
Sbjct: 624 ATEHELPGRVLDWRQ-LSKLKSTYTDALQDHINPETGRVHTSYSLTGAVTGRLASTDPNL 682

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  S                              +R   +A +G++LV  D + IE 
Sbjct: 683 QNIPVRSEEGRR-------------------------IREAFVAPKGRRLVSLDYSQIEL 717

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +A      +AF  G+D++  T +  FNV   Q+T D R   K +           
Sbjct: 718 RILAHVADIPALKQAFREGQDIHAMTASEMFNVPLDQMTPDIRRQAKAIN---------- 767

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A       +A +  
Sbjct: 768 ----FGVIYGIS------------------------------GFGLARNLRIPRSAAQGF 793

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + ++   +    ++     +                           N  +    GR
Sbjct: 794 IDRYFERFPGIKGYMDDTVAFAK--------------------------ANGFVQTLFGR 827

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622
            +   ++               R            +Q  + D++   M+    A      
Sbjct: 828 KIHTPEIN----ARGPGAGFAKRAAINAP------IQGTAADVIRRAMVRMPAAIAGIDA 877

Query: 623 DIVLTVHDEIVCETPDTDEFNASML-YHLMTSN--PSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E  +        +   +M +   P+    + L  E      +
Sbjct: 878 KMLLQVHDELLFEVAEDAVDTLIPIAREVMETACDPAVHLSVRLTVEAGHGANW 931


>gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
 gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1]
          Length = 890

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 314 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 363

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 364 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 421

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A     +Y   D  VT  + +
Sbjct: 422 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQ 471

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q  
Sbjct: 472 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 531

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 532 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 590

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 591 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 649

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 650 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 684

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 685 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 730

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 731 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 760

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 761 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 794

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 795 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 845

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 846 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 886


>gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA]
 gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655]
 gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA]
          Length = 935

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 100/705 (14%), Positives = 213/705 (30%), Gaps = 165/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 359 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN ++  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 409 TALAAIKLILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 466

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++   +   EY   D  VT 
Sbjct: 467 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLQQATEYAAEDADVTM 514

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 515 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 574

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 575 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 632

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 633 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 692

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 693 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 727

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +                   
Sbjct: 728 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------GLI 773

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  + +        ++    + Q++
Sbjct: 774 YGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQRY 803

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +   ++    +                              +    GR L   D+ 
Sbjct: 804 PSVQQFMTDIRAKAK--------------------------AQGYVETLFGRRLYLPDIN 837

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
           ++ +      +   R            +Q  + DI+   M+   +        ++++ VH
Sbjct: 838 SSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVH 888

Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E   +   F    +   + +       +PL  E    + +
Sbjct: 889 DELVFEVRSEKVAFFREQIKQHIEAAAELV--VPLIVEVGVGQNW 931


>gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114]
 gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Vibrio fischeri ES114]
          Length = 932

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 97/705 (13%), Positives = 200/705 (28%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             +I  +F  ++         HD            + 
Sbjct: 356 AFDTETDSLDYMV----------ANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           + LK  LE+ +   V  N  ++ +VL    ++++   +   T++ +           + +
Sbjct: 406 EQLKPYLEDDNKAKVGQNLKYDASVLARY-DIEMKGIK-FDTMLESYVYNSVAGKHNMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                 I+     E       +    ++ A      Y   D  +T  +
Sbjct: 464 LALRY--------LQHNTISF----EEIAGKGKKQLTFNQIALEQAAPYAAEDADITLRL 511

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L                 E  L  +   +  +G  +D  L    +  +     +L++
Sbjct: 512 HHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDDMLLSAQSVEIGQRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
               +      +    ++L+T LF +  L +   T +    T + VL       P    +
Sbjct: 572 AAFEVAG-EEFNMNSPKQLQTILFEKMELPVIKKTPSGAASTNEEVLQELALDYPLPKLI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L + +N       T      + TGR S      QN+P  +   
Sbjct: 631 LEYR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEG 689

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   +A  G K++  D + IE R++A ++ ++
Sbjct: 690 RR-------------------------IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDK 724

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A    V+  +VT + R   K +                    G
Sbjct: 725 ALLAAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINF--------------GLIYG 770

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    A  +                                     +     + +++  
Sbjct: 771 MSAFGLAKQI------------------------------GIPRGEAQDYMNVYFERYPG 800

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +   E      +                             +    GR L   ++   
Sbjct: 801 VMQYMEETRLLATE--------------------------QGYVETLYGRRLHLPEINAR 834

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVH 629
                   +   R            +Q  + DI+ + M+          K   ++++ VH
Sbjct: 835 NGMRR---KAAERAAINAP------MQGTAADIIKKAMILVDEWVETEGKDRVNLLMQVH 885

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +       + +  LM         +PL AE      +
Sbjct: 886 DELVFEVKEDALDEVTTKVRELMEQAAQ--LDVPLVAEAGFGNNW 928


>gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
 gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C]
          Length = 1004

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 103/706 (14%), Positives = 204/706 (28%), Gaps = 173/706 (24%)

Query: 21   ICKYAEDVCVILFAFGFDDH---------PVELWDCVHDPVM------------------ 53
                A    ++ F+    D+                 H   +                  
Sbjct: 415  TSPDAMRADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPVRET 474

Query: 54   PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
               LKE LE+  V  V  N  +   V+K      I +  +  T++++           + 
Sbjct: 475  LSRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTMLMSYVLDAGNGAHGMD 531

Query: 111  AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            ++ E           G   IA     +        +             Y   D  +   
Sbjct: 532  SLAERW--------LGHTPIAY----KDVTGTGRSSLTFDFVDIDKATAYAAEDADIALR 579

Query: 171  IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            ++  L+P              E+ L  +   + +RG  VD  +   L+  +      L+ 
Sbjct: 580  LWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALED 639

Query: 221  ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
            E+  L      +    ++L   LF + GL     T+    +T  +VL           + 
Sbjct: 640  EIYRLAG-ETFTIGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRK 698

Query: 277  FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              +  + ++      + L   ++ + +   T   + A+ TGR S      QN+P  +   
Sbjct: 699  IVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEG 758

Query: 337  EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
             +                         +R+  +A+ G KLV AD + IE RVLA +A   
Sbjct: 759  RK-------------------------IRTAFVATPGHKLVSADYSQIELRVLAHVADIP 793

Query: 397  WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
               +AF  G D++  T +  F V    +  + R   K +   +                G
Sbjct: 794  QLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGII--------------YG 839

Query: 457  LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
            ++    A+ +                                  +      K + ++   
Sbjct: 840  ISAFGLANQLSIE------------------------------RSEAGDYIKRYFERFPG 869

Query: 517  VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            + +          +                          N  +    GR   Y D+ ++
Sbjct: 870  IRDYMENTKAFARE--------------------------NGYVETIFGRRAHYPDIRSS 903

Query: 577  RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
               +        R            +Q  + DI+   M+         K    ++L VHD
Sbjct: 904  NPSMR---AFNERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHD 954

Query: 631  EIVCETPDTDEF-NASMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673
            E++ E  D +      ++  +M +    A    +PLK +   +  +
Sbjct: 955  ELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000


>gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922]
 gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922]
          Length = 941

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 118/704 (16%), Positives = 214/704 (30%), Gaps = 163/704 (23%)

Query: 1   MATL---FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVM 53
           M TL     D ET S   L          +  ++  +F ++           D      +
Sbjct: 366 MKTLDSFAFDTETTSLDPL----------EAKLVGISFSWEKGKGYYLPFPEDFDDAKNI 415

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111
                E   N  +  + HN  ++  VL     + I       T++            L  
Sbjct: 416 ILEFAELFSNPAIEKIGHNIKYDLKVLYKY-GIRIDGEN-FDTMIAHYLLNPDMRHNLDV 473

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E       K    + LI +              K           EY   D  VT ++
Sbjct: 474 LSETY--LGYKPVSIETLIGK---------KGKNQKNFREVDLIEQTEYGTEDSDVTFQL 522

Query: 172 FKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
               EP              E  L  +  T+   G  +DV     L++    +  +L+Q+
Sbjct: 523 KNIFEPELEKVSLTKLFRNIEMPLMKVLATMEIEGIRLDVDFLQQLSKKHQEKIKELEQK 582

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQAIQV 276
           + S       +    ++L   LF +  L  +         +T + +LS      P    +
Sbjct: 583 IFSEAG-EEFNLNSPKQLGDILFDKLKLEPKSKKTKTGQYSTGEEILSKLAH-YPIIKNI 640

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + R    +     ++ L E +N   +   T      + TGR S      QN+P  +   
Sbjct: 641 LHYRQ-LQKLKSTYIDALPELVNPVTQRVHTTFAQTVAATGRLSSVNPNLQNIPIRTEEG 699

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
                                      +R   IA     K++ AD + IE R++A MA +
Sbjct: 700 -------------------------QQIRKAFIARNPEYKIISADYSQIELRLIAQMAQD 734

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              +KAF+ GED++ +T A+ F VA  +VT++QR+  K +                    
Sbjct: 735 PVMVKAFQDGEDIHASTAAKIFGVALDEVTREQRSQAKTVNF--------------GIIY 780

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    A                                     T  +++  A+ + + 
Sbjct: 781 GVSAFGLAQQ------------------------------TGLSNTEAKKLIDAYYETYP 810

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            + +  ++   +  +                          N  +     R    +D+ +
Sbjct: 811 TLKKYIDQQIASARE--------------------------NGFVETLMRRRRYLKDINS 844

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHD 630
                NT      R            +Q  + DI+   M+   K         ++L VHD
Sbjct: 845 RN---NTVRSHAERNAVNAP------IQGSAADIVKLAMIQIQKELDKKFATKMLLQVHD 895

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V + P ++    S  +   M S       +PL AE      +
Sbjct: 896 ELVFDAPISEVEEVSKMIKTTMESVIQ--MEVPLVAEVGVGDNW 937


>gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99]
 gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99]
          Length = 917

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 209/709 (29%), Gaps = 170/709 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
             + ID ET S           Y E   ++  +F  +          HD           
Sbjct: 338 DLIAIDTETTSLN---------YME-AKLVGISFAIEAGKAAYLPLGHDYLDAPKQLDQA 387

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
                LK  LEN ++  V  N  ++ ++      + +       T++ +           
Sbjct: 388 EALAKLKPLLENPELKKVGQNLKYDISIFAN-VGIKLQGIA-FDTMLESYVFNSVATKHN 445

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  +             G + I+     E       +    ++    +   Y   D  +T
Sbjct: 446 MDDLALKY--------LGHKNISF----EEIAGKGVKQLTFNQIDLEIAAPYAAEDADIT 493

Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P               E  L  +   I   G  +D  +    ++ +     +
Sbjct: 494 LRLHQHLWPRLEKEPQLAAVFTDIELPLIQILSDIERGGVLIDGMMLGQQSEELARTIDE 553

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+Q+   +      +    ++L+   F + G  +   T     +T + VL       P  
Sbjct: 554 LEQKAFEIAG-EKFNLSSPKQLQALFFEKLGYPIIKKTPKGAPSTAEDVLVELALDYPLP 612

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +  +R   ++      + L   +N+  GR+  +     A+ TGR S      QN+P  
Sbjct: 613 KIILQHR-SLAKLKSTYTDKLPLMVNAQSGRIHTSYHQANAA-TGRLSSSEPNLQNIPIR 670

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R   IA EGKK++ AD + IE R++A +
Sbjct: 671 TEEGRR-------------------------IRQAFIAREGKKVLAADYSQIELRIMAHL 705

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F+V   +VT +QR   K +                 
Sbjct: 706 SQDKGLLTAFAAGKDIHRATAAEVFDVDFDEVTTEQRRRAKAVN--------------FG 751

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++    A  +                                     ++    + +
Sbjct: 752 LIYGMSAFGLAKQLDI------------------------------SRPEAQKYIDTYFK 781

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +   E                                +   +    GR L    
Sbjct: 782 RYPGVLKYMEETRAEA--------------------------ADLGYVSTLYGRRLYLPA 815

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625
           + +  +          R            +Q  + DI+ + M+N         +   +++
Sbjct: 816 IKDRNAMRRQA---AERAAINAP------MQGTAADIIKKAMINIAHWIATETRGEIEMI 866

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + VHDE+V E            +  LM    S    + L AE      +
Sbjct: 867 MQVHDELVFEVDSDKAEEMREKVCQLMADAVS--LDVELLAEAGIGDNW 913


>gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21]
 gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21]
          Length = 906

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 205/703 (29%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 330 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWVI 379

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 380 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 437

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++ A +   +Y   D  VT  + +
Sbjct: 438 LALRFLQHS----------CISFEQVAGKGKNQLTFNQIALQEAAQYAAEDADVTLRLHQ 487

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q+ 
Sbjct: 488 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKA 547

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 548 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 606

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 607 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 665

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 666 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 700

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 701 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS 746

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 747 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 776

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      Q                             +    GR L   ++ +  +
Sbjct: 777 QYMEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNA 810

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 811 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDE 861

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 862 LVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGGNW 902


>gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
 gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489]
          Length = 946

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 104/705 (14%), Positives = 217/705 (30%), Gaps = 164/705 (23%)

Query: 1   MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMP 54
           M    +  D ET     LT            ++  AF ++           D      + 
Sbjct: 370 MKQTSVCFDTETTGLNPLT----------AELVGIAFSWEASKGFYIPFPEDQDQAQELI 419

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112
           + L+   E+  +  +  N  ++  VL+    + I    +  T++            +  +
Sbjct: 420 EQLRPFFEDEKIEKIGQNLKYDIKVLRKYNLI-IK-GAYFDTMLAHYLINPDMRHNMDVL 477

Query: 113 GE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            E  L  +   + E   LI +                  +       EY   D  +T ++
Sbjct: 478 AETYLNYTPISITE---LIGK---------KGKNQLSMRQVPIEKQTEYAVEDADITYQL 525

Query: 172 FKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
               +P     +           L  +   +   G  +DV   ++L++ ++ +   L+  
Sbjct: 526 ASHFKPELKDAKTEELFNDIEIPLLSVLADMELEGINLDVDFLNSLSEELNTDIKNLETS 585

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +         +    ++L   LF +  L      T+    +T + VLS   +       +
Sbjct: 586 IYEAAG-EEFNIASPKQLGEILFGKLKLVDKPKKTKTGQYSTAEDVLSYLAQDHEIIKNI 644

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++     ++ L + +        T      + TGR S      QN+P  +   
Sbjct: 645 LEYR-GLAKLKSTYIDALPDQVEESTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERG 703

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
                                      VR   +   E   L+ AD + IE R++A ++ E
Sbjct: 704 R-------------------------QVRKAFVPRDENYTLLAADYSQIELRIIAALSDE 738

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++AF+ GED++ +T ++ FNV   QVT++QR+  K +   + Y            + 
Sbjct: 739 TTMIEAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNFGIIY-----GVSAFGLSN 793

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             +                                             + +  A+ + + 
Sbjct: 794 QTD---------------------------------------LSRGESKELIDAYYETYP 814

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           ++ +  +EL                                N  +    GR    +D+ +
Sbjct: 815 KLKKYMSELVDFARD--------------------------NGYVQTVLGRRRYLKDINS 848

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
             + + +   +               +Q  + DI+   M+N  K          ++L VH
Sbjct: 849 RNAVVRSAAERN---------AVNAPIQGSAADIIKIAMINIHKKLTGGNFKTKMLLQVH 899

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V +   T+     +++   M +  S A  +PL  E      +
Sbjct: 900 DELVFDAHKTELEEVRALIKTEMENAYSLA--VPLDVEIGTGDNW 942


>gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12]
 gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12]
          Length = 917

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/709 (14%), Positives = 206/709 (29%), Gaps = 170/709 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
             + ID ET S   +          D  ++  +F  +          HD           
Sbjct: 338 DLIAIDTETTSLNYM----------DAKLVGISFAIEAGKAAYLPLGHDYLDAPEQLDQA 387

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
                LK  LEN ++  V  N  ++ ++      + +       T++ +           
Sbjct: 388 EALAKLKPLLENPELKKVGQNLKYDISIFAN-VGIKLQGIA-FDTMLESYVFNSVATKHN 445

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  +             G + I+     E       +    ++        Y   D  +T
Sbjct: 446 MDDLALKY--------LGHKNISF----EEIAGKGVKQLTFNQIDLETAAPYAAEDADIT 493

Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P               E  L  +   I   G  +D  +    +  +     +
Sbjct: 494 LRLHQHLWPRLEKEPELASVFTDIELPLIQVLSDIERGGVLIDSMMLGQQSGELARTIDE 553

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+Q+   +      +    ++L+   F + G  +   T     +T + VL       P  
Sbjct: 554 LEQKAFEIAG-EKFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPLP 612

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +  +R   ++      + L   +N   GR+  +     A+ TGR S      QN+P  
Sbjct: 613 KIILQHR-SLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANAA-TGRLSSSEPNLQNIPIR 670

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R   IA EGKK++ AD + IE R++A +
Sbjct: 671 TEEGRR-------------------------IRHAFIAREGKKVLAADYSQIELRIMAHL 705

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F+V   +VT +QR   K +                 
Sbjct: 706 SQDEGLLTAFAAGKDIHRATAAEVFDVDFGEVTTEQRRRAKAVN--------------FG 751

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++    A  +                                     ++    + +
Sbjct: 752 LIYGMSAFGLAKQLDI------------------------------PRPEAQKYIDTYFK 781

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +   E                                +   +    GR L    
Sbjct: 782 RYPGVLKYMEETRAEA--------------------------ADLGYVSTLYGRRLYLPA 815

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIV 625
           + +  +          R            +Q  + DI+ + M+N             D++
Sbjct: 816 IKDRNAMRRQA---AERAAINAP------MQGTAADIIKKAMINIAHWIATETHGEIDMI 866

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + VHDE+V E          + +  LM    S    + L AE      +
Sbjct: 867 MQVHDELVFEVDSDRAEEMQAKVCQLMADAVS--LDVELLAEAGIGDNW 913


>gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4]
 gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4]
          Length = 892

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 109/705 (15%), Positives = 206/705 (29%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S   L          +  ++  +F F +H        H             + 
Sbjct: 317 AVDLETTSLNPL----------EAEIVGISFSFREHEAYYIPVGHRYPGAPHQLSRDDVL 366

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKA 111
             LK  L + +   +  N  ++  VL+    +D+    W  T++ +           L +
Sbjct: 367 GALKPLLLDPEKHKIGQNIKYDYQVLRRA-GIDMQGI-WCDTMLASYLLNPTRTSQGLDS 424

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                +I+               K   +        Y   D   T  +
Sbjct: 425 LAVEF--------LDHRMISY----AEVAGKGKEQKNFAQVEVEKASVYSCEDADATYLL 472

Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            K   P              E  L  +   +   G  +D+ L   L+     +   L++E
Sbjct: 473 HKLFLPRLAESGMERLFFELEMPLVKILAEMELYGVKLDLPLLQRLSDGFGGQLADLERE 532

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276
           + +L  G   +    ++L   LF    L +   T+     +T    L         A  +
Sbjct: 533 IFALAGG-EFNVNSPKQLGEVLFERLQLQVGKKTKTKTGWSTNVDELERLAGEHEIARLI 591

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   S+      + L + +++  GR+  +      + TGR S      QN+P  S  
Sbjct: 592 LQYR-SLSKLKSTYTDALPKLVDAASGRVHTSYNQAV-TNTGRLSSSEPNLQNIPIRSEE 649

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA+EG  L+ AD + IE RVLA ++ +
Sbjct: 650 GR-------------------------SIRHAFIAAEGCLLLSADYSQIELRVLAHLSAD 684

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +    AF   ED++  T A  F + P  VT++ R   K +                    
Sbjct: 685 RVFCDAFARDEDIHTRTAAEVFGLFPQMVTQEMRRQAKTIN--------------FGVIY 730

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G                              +     A E        +     +  +H+
Sbjct: 731 G------------------------------QGAFSLARELGVSTKVAKEFIDNYFARHA 760

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                 +       +  +NG                             GR L   D+ +
Sbjct: 761 GARTFLDGC---VREAEDNGYVTTIL-----------------------GRRLPIPDIKS 794

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
           +   +    ++               +Q  + DI+ + M+              +++ VH
Sbjct: 795 SNGNIRAFAQRN---------AVNYPIQGSAADIIKQAMVRVVDRMEREGMKSRLIMQVH 845

Query: 630 DEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P+ ++    ML    M    +    +PL+ +    + +
Sbjct: 846 DELVFEVPEEEKLAMEMLVKHEMEHAVT--LRVPLRVDMNFGRNW 888


>gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220]
 gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220]
          Length = 928

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 207/701 (29%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRDRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +LK  LE+ +   V  N  ++R +L    ++++       T++ +          +V  
Sbjct: 403 ALLKPLLEDENAHKVGQNLKYDRGILANY-DIELRGI-VFDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K              L  +   +   G  +  A+ H  ++ + +   +L+Q+  
Sbjct: 512 MWPELQKHKGPLNVFENIDMPLVPVLSRVERNGVKIAPAVLHKHSEELTLRLNELEQKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 EIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINKKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++   
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNGA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                 +               +Q  + DI+   M+         +    +++ VHDE+V
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELV 885

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D  +    ++ LM +       +PL  E    + +
Sbjct: 886 FEVHKDDLESVSKKIHQLMEN--ETHIDVPLLVEVGSGENW 924


>gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby]
 gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby]
          Length = 896

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 101/700 (14%), Positives = 200/700 (28%), Gaps = 162/700 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56
            ID ET +                 ++  +   ++         H           +   
Sbjct: 324 CIDTETTNLD----------VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTA 373

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115
           LK  LEN  +  +  N  ++ +VLK    + +   R+  T++ +      +        A
Sbjct: 374 LKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDSLA 431

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           LK    K    ++                +     +      G Y   D  +T  +  +L
Sbjct: 432 LKYLGYKTISYED----------VAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKL 481

Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            P+  +               +   +   G  +D  +       +  +   L+QE   L 
Sbjct: 482 YPMLDEPLRNVLHDIEMPLLTVLADMEIHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA 541

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L+  LF E  L           +T + VL            +   R  
Sbjct: 542 G-KAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAVILEYR-S 599

Query: 283 ASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            S+     ++ L + +N    R+  +     A+ TGR S      QN+P  S        
Sbjct: 600 LSKLVSTYIDALPKRINPKTHRVHTSYNQAVAA-TGRLSSSDPNLQNIPIRSEEGR---- 654

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R+  IA EG  ++ AD + IE R++A ++ +   L+A
Sbjct: 655 ---------------------LIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRA 693

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D++  T +  F      V+K+QR   K +                    G++   
Sbjct: 694 FANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF--------------GLIYGMSAFG 739

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  +                                     +     + +++ +V E  
Sbjct: 740 LAKQI------------------------------GVERQDAQHYIDTYFRRYPKVLEYM 769

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +   Q                             +    GR L   ++ +      
Sbjct: 770 ERTRKQAHQ--------------------------LGYVETLFGRRLYLPEINSRNLMR- 802

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVC 634
              +   R    G       +Q  + DI+ + M+  +            +++ VHDE+V 
Sbjct: 803 --QKAAERTAINGP------MQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVF 854

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E          ++++ LM         +PL         +
Sbjct: 855 EVRKEAVEECHAIIHKLMEQTVK--LSVPLVVSIGIGSNW 892


>gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45]
 gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45]
          Length = 935

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 100/714 (14%), Positives = 196/714 (27%), Gaps = 176/714 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + +D ET    ++             ++  +              H              
Sbjct: 350 VAVDTETTGLNEMAC----------DLVGISLCITPGKACYIPLAHRAAATDDLFGSDEL 399

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                       +LK  LE+  V  +  N  ++  +      + I       T++++ + 
Sbjct: 400 AEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIFARY-GIGITP--IDDTMLMSYAM 456

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E     S      K L+                    R       +Y
Sbjct: 457 HGGLHGHGMDTLSERY--LSHTPIPIKSLL----------GSGKSQITFDRVPVEDAVKY 504

Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  ++   +P   +++           L  +   +   G  VD      ++  
Sbjct: 505 AAEDADITLRLWTIFKPQLHQDRVTRVYEGLERPLVPVLAEMEMAGVQVDRDTLSRMSNA 564

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +  +L+ E+  L      +    ++L   LF + GL      +T    T   VL   
Sbjct: 565 FSQKMAQLEAEIHELAG-ESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADVLEDL 623

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   +V + R   S+      + L E +N +     T   +  + TGR +      
Sbjct: 624 ATEHELPARVLDWRQ-LSKLKSTYTDALQEHINKETGRVHTSYVIAGANTGRLASTDPNL 682

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  S                              +R   +A EGK +V  D + IE 
Sbjct: 683 QNIPVRSEEGRR-------------------------IREAFVAPEGKTIVSLDYSQIEL 717

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA MAG     +AF  G+D++  T +  FNV   ++T + R   K +           
Sbjct: 718 RILAHMAGIDALKEAFREGQDIHAMTASEMFNVPMEEMTPEIRRQAKAIN---------- 767

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A          +  
Sbjct: 768 ----FGVIYGIS------------------------------GFGLARNLRIPRGEAQAF 793

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + ++   +    +E     ++                             +    GR
Sbjct: 794 IDRYFERFPGIKTYMDETVAFAKEHK--------------------------RVETLFGR 827

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622
            +   ++    S          R            +Q  + DI+   M+       +   
Sbjct: 828 IIHTPEI----SASGPRAGFAKRAAINAP------IQGTAADIIRRAMVRMPGAIAEIPA 877

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E     E +  +    +M     P     +PL  +    K +
Sbjct: 878 KMLLQVHDELIFEVEQGAEDDLIAAARSVMEGAAEPVVKLDVPLVVDAGRGKSW 931


>gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
 gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy]
          Length = 896

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 200/700 (28%), Gaps = 162/700 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56
            ID ET +                 ++  +   ++         H           +   
Sbjct: 324 CIDTETTNLD----------VMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVLTA 373

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115
           LK  LEN  +  +  N  ++ +VLK    + +   R+  T++ +      +        A
Sbjct: 374 LKPILENPAIGKIGQNIKYDYSVLKNY-GITLQGIRY-DTMLESYVLNSGAGRHDMDSLA 431

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           LK    K    ++                +     +      G Y   D  +T  +  +L
Sbjct: 432 LKYLGYKTISYED----------VAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKL 481

Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            P+  K               +   +   G  +D  +       +  +   L+QE   L 
Sbjct: 482 YPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA 541

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L+  LF E  L           +T + VL            +   R  
Sbjct: 542 G-KAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAVILEYR-S 599

Query: 283 ASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            S+     ++ L + +N    R+  +     A+ TGR S      QN+P  S        
Sbjct: 600 LSKLVSTYIDALPKRINPKTHRVHTSYNQAVAA-TGRLSSSDPNLQNIPIRSEEGR---- 654

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R+  IA EG  ++ AD + IE R++A ++ +   L+A
Sbjct: 655 ---------------------LIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRA 693

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D++  T +  F      V+K+QR   K +                    G++   
Sbjct: 694 FANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF--------------GLIYGMSAFG 739

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  +                                     +     + +++ +V E  
Sbjct: 740 LAKQI------------------------------GVERQDAQHYIDTYFRRYPKVLEYM 769

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +   Q                             +    GR L   ++ +      
Sbjct: 770 ERTRKQAHQ--------------------------LGYVETLFGRRLYLPEINSRNLMR- 802

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVC 634
              +   R    G       +Q  + DI+ + M+  +            +++ VHDE+V 
Sbjct: 803 --QKAAERTAINGP------MQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVF 854

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E          ++++ LM         +PL         +
Sbjct: 855 EVRKEAVEECHAIIHKLMEQTVK--LSVPLVVSIGTGSNW 892


>gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 911

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 199/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F             HD            + 
Sbjct: 335 AFDTETTSLDYM----------QAQLVGMSFAVKAGEAAYLPVAHDYPGAPEQLSLEFVM 384

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           Q L   L +     V  N  ++++VL       +   +   T++ +              
Sbjct: 385 QKLGPILADAKKAKVGQNLKYDKSVLANA-GYQLNGIK-FDTMLESYVLNSVGTRHDMDS 442

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    ++                +    ++      G Y   D  +T  + +
Sbjct: 443 LALKFLGHKNISFED----------IAGKGKKQLTFNQVELDKAGPYAAEDADITLRLHQ 492

Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L  +   I   G  +D  +    +Q +     +L++E 
Sbjct: 493 VLWPKLAADEKLKSVFEDIEMPLVNVISDIERTGVAIDSKMLAAHSQRLGERLLELEKEA 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF +  L +   T     +T + VL       P    +  
Sbjct: 553 YEIAG-EPFNLSSPKQLQVLLFEKLELPIIKKTPKGAPSTAEEVLQELAHDYPLPKVIIE 611

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+      + L   +N   +   T      + TGR S      QN+P  S     
Sbjct: 612 HR-GLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRR 670

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA++G K+V AD + IE R++A ++ ++  
Sbjct: 671 -------------------------IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGL 705

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G D++  T A  F V+  +VT D R   K +                    G++
Sbjct: 706 LSAFANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNF--------------GLIYGMS 751

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + ++   V 
Sbjct: 752 ------------------------------AFGLARQLDVPRHEAQHYIDKYFERFPGVL 781

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E      +   +                          +  +    GR L   ++     
Sbjct: 782 EYMETTREKAAE--------------------------SGYVETIFGRRLYLPEIKAQNG 815

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDE 631
                 +   R            +Q  + DI+ + M++     Y        +++ VHDE
Sbjct: 816 ARR---KGAERAAINAP------MQGTAADIIKKAMLSVHSWVYEQAPNTVKLLMQVHDE 866

Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E            +  LM+   +    +PL  E  E   +
Sbjct: 867 LVFEIKTDCVDAYTKHICELMSQAAT--LDVPLIVEADEGDNW 907


>gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040]
 gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040]
          Length = 935

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 95/716 (13%), Positives = 201/716 (28%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    ++             ++  +              H             
Sbjct: 349 YVAVDTETTGLNEMI----------ADLVGISLCVVPGQACYVPLTHKTGNSDDLFGSDD 398

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                       ++LK  LE+  +  +  N  ++  +        I +     T++L+ +
Sbjct: 399 LAEGQMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARN---GIDVTPIDDTMLLSYA 455

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  + E       +    K L+                    R +      
Sbjct: 456 LHGGMHGHGMDTLSERY--LDHQPIPIKSLL----------GSGKSAITFDRVSIEDATP 503

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  ++++ +P   ++Q           L  +   +   G  VD      ++ 
Sbjct: 504 YAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQHGIKVDRDTLSRMSN 563

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L      +    ++L   LF +  L      +T    T   +L  
Sbjct: 564 AFSQKMAALEAEIHELAG-ETFNVGSPKQLGEILFDKMSLPGGKKGKTGAYATGADILED 622

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVF 324
                    +V + R   S+      + L E ++ + GR+  +    GA+ TGR +    
Sbjct: 623 LATEHTLPARVLDWRQ-LSKLKSTYTDALQEHIHPETGRVHTSYLQTGAN-TGRLASSDP 680

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  S                              +R   +A EG  L+  D + I
Sbjct: 681 NLQNIPVRSEEGRR-------------------------IREAFVADEGNVLLSLDYSQI 715

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA +AG     +AF  G D++  T +  F+V   ++T D R   K +         
Sbjct: 716 ELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPDIRRKAKAIN-------- 767

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G++                                  A          +
Sbjct: 768 ------FGVIYGIS------------------------------GFGLARNLRIPRGEAQ 791

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                + ++   + +  ++     ++                          +  +    
Sbjct: 792 GFIDRYFERFPGIRQYMDDTVNFAKE--------------------------HGYVQTLF 825

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA 620
           GR +   ++    +          R            +Q  + D++   M+         
Sbjct: 826 GRKIHTPEI----AAKGPRASFAKRAAINAP------IQGTAADVIRRAMVRMPEAIAHL 875

Query: 621 GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
              ++L VHDE++ E P+   E   S+   +M      A    + L  +    + +
Sbjct: 876 PARMLLQVHDELLFEVPEDHVEETISVAREIMEGAADPAVHMDVKLVVDAGRGQNW 931


>gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris]
 gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris]
          Length = 896

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 201/700 (28%), Gaps = 162/700 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56
            ID ET +                 ++  +   ++         H           +   
Sbjct: 324 CIDTETTNLD----------VMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVLTA 373

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115
           LK  LEN  +  +  N  ++ +VLK    + +   R+  T++ +      +        A
Sbjct: 374 LKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDSLA 431

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           LK    K    ++                +     +      G Y   D  +T  +  +L
Sbjct: 432 LKYLGYKTISYED----------VAGKGAKQLRFDQIPVEKAGIYAAEDADITLRLHHKL 481

Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            P+  K               +   +   G  +D  +       +  +   L+QE   L 
Sbjct: 482 YPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA 541

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L+  LF E  L           +T + VL            +   R  
Sbjct: 542 G-KAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAVILEYR-S 599

Query: 283 ASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            S+     ++ L + +N    R+  +     A+ TGR S      QN+P  S        
Sbjct: 600 LSKLVSTYIDALPKRINPKTHRVHTSYNQAVAA-TGRLSSSDPNLQNIPIRSEEGR---- 654

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R+  IA EG  ++ AD + IE R++A ++ +   L+A
Sbjct: 655 ---------------------LIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRA 693

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D++  T +  F      V+K+QR   K +                    G++   
Sbjct: 694 FANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF--------------GLIYGMSAFG 739

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  +                                     +     + +++ +V E  
Sbjct: 740 LAKQI------------------------------GVERQDAQHYIDTYFRRYPKVLEYM 769

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +   Q                             +    GR L   ++ +      
Sbjct: 770 ERTRKQAHQ--------------------------LGYVETLFGRRLYLPEINSRNLMR- 802

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIVLTVHDEIVC 634
              +   R    G       +Q  + DI+ + M+  +            +++ VHDE+V 
Sbjct: 803 --QKAAERTAINGP------MQGTAADIIKKTMLAISSWEHSQKSPSAKMIMQVHDELVF 854

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E          +++++LM         +PL         +
Sbjct: 855 EVRKEAVEECHAIIHNLMEQTVK--LSVPLVVSIGTGSNW 892


>gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
 gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14]
          Length = 887

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 102/705 (14%), Positives = 199/705 (28%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F   +         HD            + 
Sbjct: 311 AFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVGHDYLDAPQQLDRDWVL 360

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
             LK  LEN  +  V  N  ++ +V+     + +       T++ +           + +
Sbjct: 361 AQLKPLLENPQLAKVGQNLKYDASVVARY-GITMRGIA-HDTMLASYVYNSVGGKQDMDS 418

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L       E            ++        Y   D  VT  +
Sbjct: 419 LALRF------------LQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRL 466

Query: 172 FKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             RL+ L   +  L+            +   +   G  +D  L    +Q +     +L++
Sbjct: 467 HHRLQALLEADAPLFGVYRDIEVPLVPVLSRMERTGVLIDDQLLAIQSQEIAQRLVELER 526

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+T LF +  L         T +T + VL       P    +
Sbjct: 527 KAYELADQ-EFNLSSPKQLQTILFEQMKLPVVKKTPSGTPSTNEEVLQELALDYPLPAVI 585

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L + +N       T      + TGR S      QN+P  ++  
Sbjct: 586 LEYR-GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNQEG 644

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G K++  D + IE R++A ++G+ 
Sbjct: 645 RR-------------------------IRQAFIAPSGWKIMAVDYSQIELRIMAHLSGDP 679

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF+ G+D++  T A    V+  QVT +QR   K +                    G
Sbjct: 680 ALLDAFQQGKDIHTATAAEIIGVSIDQVTSEQRRRAKAVNF--------------GLIYG 725

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +     +  +     + +++  
Sbjct: 726 MS------------------------------AFGLAKQLGIPRSEAQHYMDKYFERYPG 755

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V     E      +                             +    GR L   ++ + 
Sbjct: 756 VLRYMEETRSMAAE--------------------------QGYVETLFGRRLHLPEIQSR 789

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVH 629
                   +   R            +Q  + DI+ + M+               +++ VH
Sbjct: 790 NGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDNWIETEGQGRVKLLMQVH 840

Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  ++        +  LM S       +PL A+      +
Sbjct: 841 DELVFEVQESALSEIESKVQELMESAAQ--LNVPLVADAGHGNNW 883


>gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
 gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100]
          Length = 1009

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 104/723 (14%), Positives = 202/723 (27%), Gaps = 182/723 (25%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
            +  D ET +            A    +   A   +          H              
Sbjct: 412  VAFDTETTALD----------AMSAKLCGVALALEPGRACYIPLAHRAGDGLDFTGAGEI 461

Query: 51   -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                       LK  LE+  V  +  N  ++  +++     DI +  +  T+++A +   
Sbjct: 462  AQLPMESALPRLKALLEDDSVLKIGQNIKYDALIMRRHG--DIRVAPYDDTMLMAYACDQ 519

Query: 106  PSA------LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                     +  + +           G   IA                     A     E
Sbjct: 520  GRGGLAGFGMDELSKRH--------LGHTPIAF----TDVAGKGKAQSTFDCIAVDKATE 567

Query: 160  YCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
            Y   D  VT  ++                 + E+ +  +   +   G  VD  +   L+ 
Sbjct: 568  YAAEDADVTLRLWHLFRARIAAEGMAAVYATLERPMPAVLGQMEFNGIEVDRTVLSRLSG 627

Query: 210  IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265
                   +L+ E+  L      +    +++   LF + GL     T     +T  +VL  
Sbjct: 628  DFAQSLARLEDEIYELAGQR-FNIGSPQQIADLLFGKFGLPGAKKTSTGKWSTGAKVLED 686

Query: 266  NKKLTPQ------AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
                                  + ++      ++L + +++D     T   L ++ TGR 
Sbjct: 687  LVSSEDLTEDQRRLPAKLLEWRQLAKLKSTYTDSLPQHIDADTGRIHTCYSLASTSTGRL 746

Query: 320  SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
            S      QN+P  +R                             +RS  IA+ GKKL+ A
Sbjct: 747  SSTEPNLQNIPIRTREGR-------------------------MIRSAFIAAPGKKLISA 781

Query: 380  DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
            D + IE RVLA MA       AF  G D++  T +  F V    +  + R   K +    
Sbjct: 782  DYSQIELRVLAHMADIPALKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAINF-- 839

Query: 440  GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                            G++    +                                    
Sbjct: 840  ------------GIIYGISAFGLSQQ------------------------------LGIP 857

Query: 500  GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                      + ++   +    + +     +                          +  
Sbjct: 858  RQEAGDYIAKYFERFPGIRAYMDAMRSKVHE--------------------------DGH 891

Query: 560  LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-- 617
            +    GR + + ++   +  +        R            +Q  + DI+   M+    
Sbjct: 892  VETLFGRKIHFPEIKTPKWNMRQF---FERAAINAP------IQGTAADIIRRAMVRVPA 942

Query: 618  --TKAG--YDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYES 670
               +AG    ++L VHDE+V E  D++       +  +M     P+ A  +PLK +   +
Sbjct: 943  ALEQAGVRARMLLQVHDELVFEADDSEVEATIKAVTRVMERAAEPAVAFSVPLKVDARAA 1002

Query: 671  KRY 673
            + +
Sbjct: 1003 QNW 1005


>gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 933

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 98/705 (13%), Positives = 205/705 (29%), Gaps = 165/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----------HDP 51
             + +D ET     ++            ++  +F  ++                      
Sbjct: 357 KLIAVDTETDGLDYMS----------ANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKN 406

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                LK  LEN ++  +  N  F+ T+      +D+       T++L+ +        +
Sbjct: 407 TALSALKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIE-FDTMLLSYTLDSTGRHNM 464

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G + I+     E            ++      GEY   D  VT 
Sbjct: 465 DDLAKRY--------LGHQTISF----EDIAGKGKNQLTFNQIPLEQAGEYAAEDADVTM 512

Query: 170 EIFKRLEPLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L      +  L  L Q            +   G  +D       +  +    T L
Sbjct: 513 KLQQVLWQKLQPQPGLVELYQSIELPLLGVLSRMERYGVLIDSDALFLQSNEITERLTAL 572

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           + +  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 573 EMQAHTLAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGVPSTNEEVLEELAYSHELPK 631

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R   S+      + L + +N       T      + TGR S      QN+P  + 
Sbjct: 632 VLVEHR-GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 690

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
           +                            +R   IA +G K++ AD + IE R++A ++ 
Sbjct: 691 AGRR-------------------------IRQAFIARDGYKIIAADYSQIELRIMAHLSN 725

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F +   QVT +QR   K +                   
Sbjct: 726 DQGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINF--------------GLI 771

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    +                                        +R    + Q++
Sbjct: 772 YGMSSFGLSRQ------------------------------LGISRADAQRYMDLYFQRY 801

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V    +++ +  +                              +    GR L   ++ 
Sbjct: 802 PNVQTFIHDIREKAK--------------------------AQGYVETLFGRRLYLPEIN 835

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTVH 629
           ++ +      +   R            +Q  + D +   M+             +++ VH
Sbjct: 836 SSNAMRR---KGAERVAINAP------MQGTAADTIKRAMIKLDGITRDDPDIHMIMQVH 886

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E           ++   M +       +PL  +    + +
Sbjct: 887 DELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 929


>gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
 gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841]
          Length = 923

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 95/700 (13%), Positives = 204/700 (29%), Gaps = 159/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     ++            ++  +F   ++         DP     +    
Sbjct: 351 DFLSLDTETTGTDPIS----------AKLVGLSFSVKENQAFYVPIPQDPEEAQKIVNEF 400

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   E+  +  +  N  ++  VL+    + +       T++            +  + E 
Sbjct: 401 KSVYEDERILKIGQNIKYDLMVLQNY-GITLK-GEIFDTMIAHYLLQPELRHGMDYLAEV 458

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               + +    +ELI                K           EY   D  +T ++    
Sbjct: 459 Y--LNYQTIHIEELIG---------PKGKNQKNMADLPPSQVYEYACEDADITLKLKNVF 507

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L  +   +   G C+D       + +   E   L++E+ +L
Sbjct: 508 EPKLKEEGCYDLFREVEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNCLEEEIHAL 567

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL + +   P   ++  +R
Sbjct: 568 AG-EPFNIASPKQVGEVLFEKLKISEKPKKTKTGQYVTSEEVLETLRTRHPIVEKILEHR 626

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L + +N +     T      + TGR S      QN+P  +   +E  
Sbjct: 627 -GLKKLLGTYIDALPKLINPETGHIHTSFNQTITTTGRLSSSNPNLQNIPVRNEEGKE-- 683

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I   G +   AD + IE R++A ++G+   ++
Sbjct: 684 -----------------------IRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIE 720

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T A+ +     +VT+++R+  K                      G+ + 
Sbjct: 721 AFREGHDIHAATAAKVYKKPLEEVTREERSKAKTANF--------------GIIYGITVF 766

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A                                        + +   +   + +V E 
Sbjct: 767 GLAER------------------------------MNVSRAEAKELIDGYFTTYPKVKEY 796

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             +  +   +                                   R    RD+ ++ + +
Sbjct: 797 MQKSIETARE--------------------------KGYTETIYHRKCYLRDINSHNAVV 830

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                   R            +Q  + DI+   M+   +          ++L VHDE+  
Sbjct: 831 RGY---AERNAINAP------IQGSAADIIKIAMIAIYRRFQKEHIRSKMILQVHDELNF 881

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                ++     +    M     +   +PL+A+    K +
Sbjct: 882 SVYPEEKERVQQIVIEEMERA--YTMQVPLEADYGWGKNW 919


>gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046]
 gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046]
          Length = 921

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 115/702 (16%), Positives = 203/702 (28%), Gaps = 161/702 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET S                 ++ F+  FD          HD           
Sbjct: 347 KRFAFDTETTSLD----------YRVAQIVGFSVAFDAQDAYYVPLAHDYENAPAQLDRE 396

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            +   +K  LE+  V  + H+  ++  VL+    +++    +  T++ +          A
Sbjct: 397 QILAQIKPILEDESVQKIGHHLKYDAHVLENH-GIELK-GWYFDTMLASYVLN------A 448

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           V     +          L   F   E       + K  ++        Y   D  VT  +
Sbjct: 449 VATRHGMDDVSRLYLSHLTTTF---EQVAGKGAKQKTFNQIEIETAAHYAAEDAHVTYRL 505

Query: 172 FKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQ 220
           F+ L+    K  EL  +   +              G  +D+     L          L+ 
Sbjct: 506 FEVLDAKLQKHPELVNILHNVEMPVARVLTIMEENGIELDLGFLDQLGIEFANTMANLES 565

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           ++  L      +    +++   LF + GL     T     +T + VL       P    +
Sbjct: 566 QITELAGQS-FNVSSPKQVGEILFDKLGLKGGKKTATGQYSTSESVLEKI--DHPITELI 622

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + R   S+      + L++  NSD     T      + TGR S      QN+P      
Sbjct: 623 LDYR-GLSKLKSTYTDGLLKQANSDTHRVHTSYHQALTATGRLSSTDPNLQNIPVREEIG 681

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA +G+ L+ AD + IE R++A  + ++
Sbjct: 682 R-------------------------QIRKAFIAPQGRVLLAADYSQIELRLMAHFSQDE 716

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF+ G+D++  T A    VA   VT DQR   K +                    G
Sbjct: 717 ALVDAFKHGQDVHRRTAAEVLGVALEDVTSDQRRQAKAVN--------------FGLLYG 762

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                       F           + Q++  
Sbjct: 763 MSEFGLTRQ------------------------------LGFSREESRGYIAKYFQRYPG 792

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +      Q   +                             +    GR L   D+  +
Sbjct: 793 VLDYMERTRQIARE--------------------------QGFVETILGRRLYTPDIMAS 826

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDEI 632
              +        R             Q  + DI+   M+       K    ++L VHDE+
Sbjct: 827 NKMIKQA---AERAAINAPL------QGSAADIIKMAMIAVDQMLPKDQTKMLLQVHDEL 877

Query: 633 VCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E  ++  +  AS L  +M S       +PL  E  + + +
Sbjct: 878 VFEVDESIADELASKLADVMQSVLQ--ISVPLLVEVGKGRNW 917


>gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 896

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 100/700 (14%), Positives = 199/700 (28%), Gaps = 162/700 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56
            ID ET +                 ++  +   ++         H           +   
Sbjct: 324 CIDTETTNLD----------VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVLTA 373

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEA 115
           LK  LEN  +  +  N  ++ +VLK    + +    +  T++ +      +        A
Sbjct: 374 LKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIGY-DTMLESYVLNSGAGRHDMDSLA 431

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           LK    K    ++                +     +      G Y   D  +T  +  +L
Sbjct: 432 LKYLGYKTISYED----------VAGKGAKQLRFDQIPVVKAGIYAAEDADITLRLHHKL 481

Query: 176 EPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            P+  +               +   +   G  +D  +       +  +   L+QE   L 
Sbjct: 482 YPMLDESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQLA 541

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L+  LF E  L           +T + VL            +   R  
Sbjct: 542 G-KAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAVILEYR-S 599

Query: 283 ASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            S+     ++ L + +N    R+  +     A+ TGR S      QN+P  S        
Sbjct: 600 LSKLVSTYIDALPKRINPKTHRVHTSYNQAVAA-TGRLSSSDPNLQNIPIRSEEGR---- 654

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R+  IA EG  ++ AD + IE R++A ++ +   L+A
Sbjct: 655 ---------------------LIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRA 693

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D++  T +  F      V+K+QR   K +                    G++   
Sbjct: 694 FANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNF--------------GLIYGMSAFG 739

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  +                                     +     + +++ +V E  
Sbjct: 740 LAKQI------------------------------GVERQDAQHYIDTYFRRYPKVLEYM 769

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +   Q                             +    GR L   ++ +      
Sbjct: 770 ERTRKQAHQ--------------------------LGYVETLFGRRLYLPEINSRNLMR- 802

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEIVC 634
              +   R    G       +Q  + DI+ + M+  +            +++ VHDE+V 
Sbjct: 803 --QKAAERTAINGP------MQGTAADIIKKTMLAISSWEHSQKNPSAKMIMQVHDELVF 854

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E          ++++ LM         +PL         +
Sbjct: 855 EVRKEAVEECRAIIHKLMEQTVK--LSVPLVVSIGTGSNW 892


>gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
 gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix]
          Length = 911

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 111/708 (15%), Positives = 206/708 (29%), Gaps = 169/708 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP-- 54
             +  D ET S   +             ++  +F F+          H     DP +P  
Sbjct: 333 DRVAFDTETTSLDAMR----------AEIVGMSFAFEPGTAWYLPLAHTGPDADPQLPRA 382

Query: 55  ---QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--- 108
              + LK  LE+     + H+  ++R VL     + +       TL+ +      +    
Sbjct: 383 ETLERLKPWLESERHGKLGHHLKYDRNVLGNH-GITLRGI-VDDTLLESFCLDAGANRHD 440

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L ++ E              L  +    E       +  P       +  +Y   D  + 
Sbjct: 441 LDSLAERH------------LDYKTTHYEDVAGKGVKQIPFAEVDIGIATDYAGEDADIC 488

Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
            ++    +P               E  L  +   I   G  VD       +Q +  E  +
Sbjct: 489 LQLDAVFQPRLQAAEGPAFVYREIEMPLVPVLADIERVGVKVDPDRLGEQSQELLAEMER 548

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQA 273
           +++E      G   +    ++++  LF   GL           +T + VL          
Sbjct: 549 IEREAFEEAGG-EFNLGSPKQIQEILFERLGLPVLRRTPKGQPSTAEDVLEQMADDYALP 607

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +  +R   S+       TL   ++ + GR+  +    GA+ TGR S      QN+P  
Sbjct: 608 RLILEHR-GLSKLRSTYTETLPRRIHPETGRVHTSYHQAGAA-TGRLSSSEPNLQNIPVR 665

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           + +                            +R   IA EG +L+ AD + IE R++A +
Sbjct: 666 TEAGRR-------------------------IRRAFIAEEGHQLLAADYSQIELRIMAHL 700

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   LKAF  G+D++  T A  F + P QV+ DQR   K +                 
Sbjct: 701 SQDAGLLKAFAEGQDIHRATAAEVFGLDPEQVSGDQRRAAKAIN--------------FG 746

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++                                  A                +  
Sbjct: 747 LIYGMS------------------------------AWGLARNLGIEQGEAREYIDRYFS 776

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +       +  +                          N  +    GR L   +
Sbjct: 777 RYPGVHDYMERARASGRE--------------------------NGYVETLFGRRLYLPE 810

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626
           + +          Q  R            +Q  + DI+   M+              +++
Sbjct: 811 INSRNGARRQ---QSERVAINAP------MQGTAADIIKRAMVRVAHDLEDTGIDARMIM 861

Query: 627 TVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE+V E  D    + + L    M+        + L  +      +
Sbjct: 862 QVHDELVFEVADAAVEDLTTLVRKAMSGAAD--LDVELVVDVGVGANW 907


>gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
           Klenow Fragment With Dna
          Length = 605

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 100/699 (14%), Positives = 203/699 (29%), Gaps = 167/699 (23%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKE 59
           T S  +++            ++  +F  +          HD              ++LK 
Sbjct: 35  TDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKP 84

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEAL 116
            LE+     V  N  ++R +L     +++       T++ +           + ++ E  
Sbjct: 85  LLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDSLAER- 141

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                       L  +    E            ++ A    G Y   D  VT ++  ++ 
Sbjct: 142 -----------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMW 190

Query: 177 PLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P   K              L  +   I   G  +D  + H  ++ + +   +L+++   +
Sbjct: 191 PDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEI 250

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281
                 +    ++L+T LF + G+     T     +T + VL       P    +   R 
Sbjct: 251 AG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYR- 308

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++      + L   +N       T      + TGR S      QN+P  +        
Sbjct: 309 GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR--- 365

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R   IA E   +V AD + IE R++A ++ ++  L A
Sbjct: 366 ----------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTA 403

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+D++  T A  F +    VT +QR   K +                    G++   
Sbjct: 404 FAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYGMS--- 446

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                          A +        ++    + +++  V E  
Sbjct: 447 ---------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLEYM 479

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                  ++                             +    GR L   D+ ++     
Sbjct: 480 ERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSSNGARR 513

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
               +               +Q  + DI+   M+              +++ VHDE+V E
Sbjct: 514 AAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFE 564

Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
               D    +  ++ LM +       +PL  E    + +
Sbjct: 565 VHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601


>gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155]
 gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155]
          Length = 921

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 105/704 (14%), Positives = 204/704 (28%), Gaps = 166/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
            +D ET S   +             ++  +F  +          HD V            
Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQINKTVAL 394

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           + L+  LE+  +  V  N  ++ ++L     + +       T++ +      ++     G
Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVA-FDTMLESYVFNSVASRHDMDG 452

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    +E                +    ++        Y   D  +T  + +
Sbjct: 453 LALKYLGHKNISFEE----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 502

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P   KE             L  +   I  +G  +D  L    +  +  +   L+++ 
Sbjct: 503 HLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKA 562

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+   F + G  +   T     +T + VL       P    +  
Sbjct: 563 YDIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILE 621

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L   +N   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 622 HR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 679

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 680 R-------------------------IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAF  G+D++  T A  F     +VT +QR   K +                    G+
Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVN--------------FGLIYGM 760

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  +                                     +     +  ++  V
Sbjct: 761 SAFGLARQLDI------------------------------PRHEAQTYIDTYFARYPGV 790

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                E                                +   +    GR L   ++ +  
Sbjct: 791 LRYMEETRAGA--------------------------ADLGYVSTLFGRRLYLPEIRDRN 824

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHD 630
           +          R            +Q  + DI+ + M+N         +    +++ VHD
Sbjct: 825 AMRRQ---GAERAAINAP------MQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHD 875

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E            +  LM         + L AE      +
Sbjct: 876 ELVFEVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917


>gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 928

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 100/702 (14%), Positives = 205/702 (29%), Gaps = 162/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  ++         HD            + 
Sbjct: 352 AFDTETTSLNYM----------QAELVGMSFCIEEGEAAYLPLAHDYADAPEQLDRDSVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            + K  LE+ +   V  +  +++ VL    ++++    +  T++ +        L +V  
Sbjct: 402 ALFKPLLEDKNKAKVGQHLKYDKNVLANY-DINLQGIAY-DTMLESYV------LDSVAT 453

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S        L       E       +    ++        Y   D  +T  +   
Sbjct: 454 RHDMDSL---AQHYLGLSTVHFEDIAGKGAKQLTFNQIPLEQAAHYAAEDADITLRLHNH 510

Query: 175 LEPLSSKEQELWYLD-----------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +    ++  EL  +              +   G  +D       +Q +     +L+ E+ 
Sbjct: 511 IWKKLNQSPELASVLSEIEVPLATVLAKMEQFGVLIDSQKLGQQSQDLASRILQLENEVH 570

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L+  LF +  L +   T     +T + VL       P   ++   
Sbjct: 571 ILAG-EEFNLGSTKQLQEILFKKLDLPVLKKTPKGAPSTSEEVLQELALTYPLP-KLLME 628

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               S+      + L + +N       T      + TGR S      QN+P  +      
Sbjct: 629 FRVLSKLKNTYTDKLPKMINQRSGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEQGRR- 687

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   VR   I   G K+V AD + IE R++A ++ ++  L
Sbjct: 688 ------------------------VRQAFIPRPGYKIVAADYSQIELRIMAHLSQDKGLL 723

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF  G+D++  T A  FNV+  +VT +QR   K +                    G++ 
Sbjct: 724 KAFSQGKDIHTATAAEVFNVSLEEVTTEQRRNAKAINF--------------GLIYGMSA 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              +                                        +     + +++  V +
Sbjct: 770 FGLSKQ------------------------------LNVSRQDAQHYMDLYFERYPGVLK 799

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
              +     ++                             +    GR L   D+  +   
Sbjct: 800 YMEDARVVAKE--------------------------KGYVSTVFGRRLYLPDINASNGL 833

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDEI 632
                +   R            +Q  + DI+ + M+               +++ VHDE+
Sbjct: 834 RR---KGAERAAINAP------MQGTAADIIKKAMLKVDAWIDTLPNDQTRMIMQVHDEL 884

Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + E  + +  +    +  LM    S    +PL  E    + +
Sbjct: 885 IFEIKEQNVESDKNTIVDLMEKAVS--LDVPLIVEAGVGENW 924


>gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
 gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510]
          Length = 971

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 95/701 (13%), Positives = 208/701 (29%), Gaps = 160/701 (22%)

Query: 2   ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56
             +  +D ET     +T            ++  +F + ++         D      +   
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRAEAQKIVNE 447

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114
            + A E   V  V  N  ++  VL      ++       T+V            +  + E
Sbjct: 448 FRPAFEKEGVLKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  +    +ELI                K     +     +Y   D  VT ++   
Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNI 554

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           LE               E  L  +   +   G  VD       ++       ++++E+  
Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLTYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           L      +    +++   LF +  +      T+T    T + VL S +       ++  +
Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    +     ++ L   +N +     T      + TGR S      QN+P  +   +E 
Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  +G +   AD + IE R++A ++G+   +
Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMI 767

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G+D++  T A+ + ++  +VT++QR+  K     +                G+++
Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGII--------------YGISV 813

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +                                  + +   + + + ++ E
Sbjct: 814 FGLAERMNVD------------------------------RKEAKELIDGYFETYPQIKE 843

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             ++                                    +    GR     D+ +  S 
Sbjct: 844 YMDKSIDLAR--------------------------GQGYIETIFGRKRYLPDINSRNSV 877

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
           +        R            +Q  + DI+   M+   +          ++L VHDE+ 
Sbjct: 878 VRGY---AERNAINAP------IQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDELN 928

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++     +    M +   +   +PL+A+      +
Sbjct: 929 FSVLPEEKEKVQKIVIEEMENA--YRMQVPLRADCGCGSNW 967


>gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37]
 gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37]
          Length = 934

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 104/717 (14%), Positives = 199/717 (27%), Gaps = 179/717 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
           T+ +D ET    ++             ++  +              H             
Sbjct: 347 TVAVDTETTGLNEMLC----------DLVGISLAVAPGEACYIPLAHLAEDGGEGLFASD 396

Query: 51  ---------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
                          LK  LE+  V  +  N  ++  +        I I     T++++ 
Sbjct: 397 AKAEGQIPMQQALDALKPLLEDASVMKIGQNMKYDAKIFSRY---GIEIAPIDDTMLMSY 453

Query: 102 SNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
           +         +  + E     +      K+L+                    R       
Sbjct: 454 ALHGGEHQHGMDTLSERY--LAHTPIPIKDLL----------GTGKSQITFDRVPLDKAT 501

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLN 208
            Y   D  +T  +    +P   +             L  + + +  RG  VD A    ++
Sbjct: 502 GYAAEDADITLRLALTFKPQLHRAHVTRVYETLERPLVPVLKAMEMRGIKVDRATLSRMS 561

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLS 264
                +  +L++E+ +L      +     +L   LF +  L      +    +T   VL 
Sbjct: 562 GKFAQKMAELEEEIHALAG-EKFNVGSPAQLGDILFEKMSLPGGKRGKNGKYSTPADVLE 620

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCV 323
                     +V + R   S+      + L E +N D GR+  +    GA+ TGR +   
Sbjct: 621 DLATEHDLPGRVLDWRQ-LSKLKSTYTDALQEHINPDTGRVHTSYSIAGAN-TGRLASND 678

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  S                              +R   +A EG  LV  D + 
Sbjct: 679 PNLQNIPVRSEEGRR-------------------------IREAFVAPEGHTLVSLDYSQ 713

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA MA      +AF  G D++  T +  FNV   ++T D R   K +        
Sbjct: 714 IELRILAHMADIDALKQAFRDGLDIHAMTASEMFNVPLDEMTPDIRRQAKAIN------- 766

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++                                  A          
Sbjct: 767 -------FGVIYGIS------------------------------GFGLARNLRIPRAEA 789

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +     + ++   + +  ++  +   +                             +   
Sbjct: 790 QGFIDRYFERFPGIKQYMDDTVKFANEHK--------------------------RVETM 823

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATK 619
            GR +   ++G              R            +Q  + DI+   M+       K
Sbjct: 824 FGRVIHTPEIGAK----GPRAGFAKRAAINAP------IQGTAADIIRRAMVRMPDAIAK 873

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSN--PSWAKGLPLKAEGYESKRY 673
               ++L VHDE++ E  D    +   +   +M +   P     +PL  +  +   +
Sbjct: 874 LPAKMLLQVHDELIFEVEDGAAGDLIDVAREVMQNACDPVVKLDVPLVVDAGQGANW 930


>gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223]
 gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223]
          Length = 921

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 105/704 (14%), Positives = 204/704 (28%), Gaps = 166/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
            +D ET S   +             ++  +F  +          HD V            
Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 394

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           + L+  LE+  +  V  N  ++ ++L     + +       T++ +      ++     G
Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVA-FDTMLESYVFNSVASRHDMDG 452

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    +E                +    ++        Y   D  +T  + +
Sbjct: 453 LALKYLGHKNISFEE----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 502

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P   KE             L  +   I  +G  +D  L    +  +  +   L+++ 
Sbjct: 503 HLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKA 562

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+   F + G  +   T     +T + VL       P    +  
Sbjct: 563 YDIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILE 621

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L   +N   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 622 HR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 679

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 680 R-------------------------IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAF  G+D++  T A  F     +VT +QR   K +                    G+
Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVN--------------FGLIYGM 760

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  +                                     +     +  ++  V
Sbjct: 761 SAFGLARQLDI------------------------------PRHEAQTYIDTYFARYPGV 790

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                E                                +   +    GR L   ++ +  
Sbjct: 791 LRYMEETRAGA--------------------------ADLGYVSTLFGRRLYLPEIRDRN 824

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHD 630
           +          R            +Q  + DI+ + M+N         +    +++ VHD
Sbjct: 825 AMRRQ---GAERAAINAP------MQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHD 875

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E            +  LM         + L AE      +
Sbjct: 876 ELVFEVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917


>gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
 gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238]
          Length = 934

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 96/705 (13%), Positives = 200/705 (28%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             +I  +F  ++         HD            + 
Sbjct: 358 AFDTETDSLDYMV----------ANLIGLSFSVEEGEAAYVPVAHDYLDAPEQLDRDWVL 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  ++ +VL    ++++   +   T++ +           + +
Sbjct: 408 AQLKPYLEDETKAKVGQNLKYDASVLARY-DIEMKGIK-FDTMLESYVYNSVAGKHNMDS 465

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                 I+     E       +    ++ A      Y   D  +T  +
Sbjct: 466 LALRY--------LQHNTISF----EEIAGKGKKQLTFNQIALEEAAPYAAEDADITLRL 513

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L                 E  L  +   +  +G  +D  L    +  +     +L+ 
Sbjct: 514 HNVLHAKLVTDEKLNAVFTDIELPLISVLSRMERKGVYIDDMLLSAQSLEIGQRLDELET 573

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
               +      +    ++L+T LF +  L +   T +    T + VL            +
Sbjct: 574 ASFEVAGQ-EFNMNSPKQLQTILFEKMELPVIKKTPSGAASTNEEVLQELALEYELPKLI 632

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L + +N       T      + TGR S      QN+P  ++  
Sbjct: 633 LEYR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNKEG 691

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   +A  G K++  D + IE R++A ++ ++
Sbjct: 692 RR-------------------------IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDR 726

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  G+D++  T A    V+  +VT + R   K +                    G
Sbjct: 727 ALLEAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINF--------------GLIYG 772

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    A  +                                     +     + +++  
Sbjct: 773 MSAFGLAKQI------------------------------GISRGEAQDYMNVYFERYPG 802

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +   E      +                             +    GR L   ++   
Sbjct: 803 VMQYMEETRLLATE--------------------------QGYVETLYGRRLYLPEINAR 836

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVH 629
            +      +   R            +Q  + DI+ + M+              ++++ VH
Sbjct: 837 NAIRR---KAAERAAINAP------MQGTAADIIKKAMILVDNWIEAEGTGRVNLLMQVH 887

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  + +       +  LM +  S    +PL AE      +
Sbjct: 888 DELVFEVKEDELEAITKQVTALMEAAVS--LDVPLIAESGFGDNW 930


>gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
 gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202]
          Length = 923

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 109/705 (15%), Positives = 196/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAQDAYYVPLAHTYENAPQQLNRE 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  T++ +           
Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDTMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVATHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 505 YRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFAKTMEG 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P A
Sbjct: 565 LENQAMEI-ADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLA 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + LVE  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTRQESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            + ++M S       +PL  E  +   +
Sbjct: 877 DELVFEVDQNIADELSKQIANVMESVLE--ISVPLVVEVGQGLNW 919


>gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1]
          Length = 645

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 187/682 (27%), Positives = 296/682 (43%), Gaps = 80/682 (11%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           A+  +   V+  D      +P  L+EALE+ DV   A N+ FER + +    +  P   W
Sbjct: 3   AWSINGGAVQHVDLHRGKKLPGELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAW 62

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECLY---DRNKP 148
            CT+ LA   G    L AVG  + L   K++  EGK LI  F K +          RN+ 
Sbjct: 63  RCTMALAYMLGFAGDLLAVGTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEA 122

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
              E W  F +Y   DV     I  R    P+   E +++ LDQ IND G  +D   A++
Sbjct: 123 TDPEDWWHFCKYNIRDVETELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYS 182

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
              + +  + ++ +E+  +T   +++     +L  WL    G    DL   T  +V+   
Sbjct: 183 ALALAEARKPQIIEEMADITG--LNNPNSPAQLTPWLKER-GYPFSDLRSDTVNKVIREA 239

Query: 267 KKLT--PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P+AI+V   R+ ++++++ K  T+++A   DGR R +LQF GASRT RW+G   
Sbjct: 240 DENGVDPEAIRVLQMRLNSAKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRI 299

Query: 325 PPQNLPRPSRSHEELDQII--------THLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
             QNLPR  +  E++  +           L        +P+  +  C+RS  I + G K 
Sbjct: 300 QTQNLPRTPKLIEDVTDLSIVNKMIHQRDLDALTLYVGEPMDALVGCIRSAFIPTPGHKF 359

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +VADL+ IE+ V+ W+   +W +       DLY +  A   ++   +     R+  K   
Sbjct: 360 IVADLSSIESVVIGWLTDCKWFMNTLAAKHDLYRSFAAHWLHLPYEETKPH-RSKAKPAT 418

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
           L  GY+ G     +    TGL                       +   M  +        
Sbjct: 419 LGAGYRLGGGHMDENGKKTGL---------------------WGYAENMGVH-------- 449

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  E   +A+R     +   W +L  A  + I   +A++         + ++  K 
Sbjct: 450 -MTQKEAEESVQAFRDLCPEIVRAWYDLENAVFKVIRTRQAVVWG------CLIIEYTKP 502

Query: 557 NLILMLPSGRSLVY---------------RDVGNNRSYLN--------TTTRQLTREYTY 593
            L + LPSGR + Y                  G   +  N         +  +  + Y++
Sbjct: 503 FLTIRLPSGRKMYYFRPRLVERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGTKWGKIYSH 562

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS 653
           GGKL ENIVQA++RD+LAEG+  A + G+ IV+ +HDEIV E P+        L   M +
Sbjct: 563 GGKLVENIVQALARDVLAEGLKKAHRMGFRIVMHIHDEIVTEVPEDSPLTVDDLISCMAA 622

Query: 654 NPSWAKGLPLKAEGYESKRYRK 675
              WA+GLPL A G+E   YRK
Sbjct: 623 ELPWAEGLPLGAAGWEGYFYRK 644


>gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130]
 gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130]
          Length = 978

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 102/719 (14%), Positives = 205/719 (28%), Gaps = 178/719 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            + +D ET S   +             ++  +              H             
Sbjct: 386 HVAVDTETTSLDAMAC----------DLVGVSLATGPGRACYIPLAHLKDGSSDDGDMFS 435

Query: 52  -----------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
                          +LK  LE   V  +A N  ++  VL       I +  +  T++L+
Sbjct: 436 EGLDPDQMDLKEALALLKPMLEAPSVLKIAQNLKYDWLVLSRY---GIEVGPFDDTMLLS 492

Query: 101 RSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                      + A+  A             L       +             + +    
Sbjct: 493 YVLDAGRGKHGMDALSLAH------------LDHTPIPFKEVAGSGKSMVTFDKVSIEKA 540

Query: 158 GEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTL 207
             Y   D  VT  ++  L+               E+ L  +   +  RG  +D  +   L
Sbjct: 541 SAYAAEDADVTLRLWTLLKARLVAEKMVTVYERLERPLVPVLCRMEARGVEIDRQILSRL 600

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263
           +  +  +   ++ ++  +    + +    ++L   LF +  L     T+T    T  + L
Sbjct: 601 SGELAQKAAGIEADIHEMAGEPI-NIASPKQLGELLFGKMELPGGKKTKTGQWATGAQAL 659

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                   +  +   +  + ++      + L   +N       T   + ++ TGR+S   
Sbjct: 660 EDLAAEGHELPRRIVDWRQLTKLKSTYTDALPTFINKTTGRVHTSYAMASTTTGRFSSSE 719

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  + +  +                         +R+  IA++G KLV AD + 
Sbjct: 720 PNLQNIPVRTEAGRK-------------------------IRTAFIAADGHKLVSADYSQ 754

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA MA      +AF  G D++  T +  FNV    +    R   K +        
Sbjct: 755 IELRVLAHMADISQLKQAFADGIDIHAMTASEMFNVPVEGMDPSIRRQAKAIN------- 807

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++                                  A          
Sbjct: 808 -------FGIIYGIS------------------------------AFGLANNLGIDRGEA 830

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
               K + ++   + +  +E  +   +                          +  +   
Sbjct: 831 SDYIKMYFERFPGIRDYMDETKKFARE--------------------------HGYVETI 864

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618
            GR   Y ++ ++   +        R            +Q  + DI+   M         
Sbjct: 865 FGRRAHYPEIKSSNPQMR---AFNERAAINAP------IQGSAADIIRRAMARMEGALAA 915

Query: 619 -KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
            K    ++L VHDE++ E PD +       +  +M   P  A    +PL+ +   ++ +
Sbjct: 916 EKLSAQMLLQVHDELIFEVPDDEVDATIETVVKVMEDAPMPALSLSVPLQVDARAAENW 974


>gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183]
 gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175]
 gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183]
 gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175]
          Length = 921

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 105/704 (14%), Positives = 204/704 (28%), Gaps = 166/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
            +D ET S   +             ++  +F  +          HD V            
Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 394

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           + L+  LE+  +  V  N  ++ ++L     + +       T++ +      ++     G
Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVA-FDTMLESYVFNSVASRHDMDG 452

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    +E                +    ++        Y   D  +T  + +
Sbjct: 453 LALKYLGHKNISFEE----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 502

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P   KE             L  +   I  +G  +D  L    +  +  +   L+++ 
Sbjct: 503 HLWPRLEKEAELAAMFIEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKA 562

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+   F + G  +   T     +T + VL       P    +  
Sbjct: 563 YDIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILE 621

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L   +N   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 622 HR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 679

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 680 R-------------------------IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAF  G+D++  T A  F     +VT +QR   K +                    G+
Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVN--------------FGLIYGM 760

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  +                                     +     +  ++  V
Sbjct: 761 SAFGLARQLDI------------------------------PRHEAQTYIDTYFARYPGV 790

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                E                                +   +    GR L   ++ +  
Sbjct: 791 LRYMEETRAGA--------------------------ADLGYVSTLFGRRLYLPEIRDRN 824

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHD 630
           +          R            +Q  + DI+ + M+N         +    +++ VHD
Sbjct: 825 AMRRQ---GAERAAINAP------MQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHD 875

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E            +  LM         + L AE      +
Sbjct: 876 ELVFEVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917


>gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus]
          Length = 923

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 110/705 (15%), Positives = 196/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDIETTSLD----------YRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQLNRE 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  T++ +           
Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDTMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+      R  
Sbjct: 505 YRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFAKTREG 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P A
Sbjct: 565 LENQAMEI-ADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLA 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + LVE  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTRQESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKVLPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  +   +
Sbjct: 877 DELVFEADQNIAEELSKQIAKVMESVVE--ISVPLVVEVGQGLNW 919


>gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
 gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1]
          Length = 937

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 204/705 (28%), Gaps = 166/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
             D ET     +          +  +I  +F             HD            + 
Sbjct: 345 AFDTETDGLDII----------NANLIGLSFAITPGEAAYLPLAHDYSDAPIQLDRTLVL 394

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKA 111
             LK  LEN     V  N  F++++L  C  + +       T++ +           + +
Sbjct: 395 DKLKPLLENPQKQKVGQNLKFDKSILARC-GIVLQGIA-FDTMLESYILNTVAGRHDMDS 452

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L  +    E            ++ A      Y   D  +T  +
Sbjct: 453 LSQRY------------LQHKTITFEEIAGKGKSQLTFNQIALEQAAPYAAEDADITLRL 500

Query: 172 FKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQ 220
              L P   + + L ++   I              G  +D A+    +Q +    T+L++
Sbjct: 501 HHCLWPQLQQSKALSWIFTHIEMPLLSVLSRIESTGVLIDRAVLAQHSQELTTRLTELEE 560

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+T L+ +  L +   T     +T + VL+      P A  +
Sbjct: 561 QAH-LLAEEPFNLASPKQLQTILYEKQQLPVLKKTPKGAPSTDEEVLAELALDYPLAKVL 619

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  S   
Sbjct: 620 LEYR-GLAKLKTTYTDKLPSMINPTSGRVHTSYHQAVTVTGRLSSREPNLQNIPIRSEEG 678

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G +++ AD + IE R++A ++ + 
Sbjct: 679 RR-------------------------IRQAFIAPPGYQIIAADYSQIELRIMAHLSQDS 713

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +KAF   +D++  T A  FNV+    T +QR   K +                    G
Sbjct: 714 GLIKAFTADKDIHRATAAEVFNVSVETATDEQRRSAKAINF--------------GLIYG 759

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        +     +  ++  
Sbjct: 760 MS------------------------------AFGLARQLGIARVEAQHYIDLYFARYPG 789

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V+     +    +Q    G                            SGR L   D+  +
Sbjct: 790 VANYMEAIR---KQAATQGYVTTL-----------------------SGRRLYLPDINAS 823

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDE 631
            +      +   RE           +Q  + DI+   M+        +    +++ VHDE
Sbjct: 824 SAMRR---KAAEREAINAP------MQGTAADIIKSAMIEIDAWLQHQPLVRMIMQVHDE 874

Query: 632 IVCETPDTDEF-NASMLYHLMTSNPS--WAKGLPLKAEGYESKRY 673
           +V E  ++        + HLM           +PL         +
Sbjct: 875 LVFEVHESVVQGAVEKIRHLMEQTTEKSMPLTVPLCVNIGVGANW 919


>gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ]
 gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ]
          Length = 888

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 107/704 (15%), Positives = 202/704 (28%), Gaps = 168/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET                   ++  +     H        H             + 
Sbjct: 314 AFDTETTGLDP----------RTAELVGISISLQAHEAFYIPVGHRYLGMPDQLPRETVL 363

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           + L+ A  N  +  V  N  F+  +L     L++    W  T++ +           L A
Sbjct: 364 ERLRPAFGNPAIRKVGQNLKFDLQILA-VAGLEVQ-GSWCDTMLCSYLLNPSRGGHGLDA 421

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +             ++I+                            Y   D   T  +
Sbjct: 422 LAQEH--------LNHKMISYD----EVTGSGKNRICFSEVEVEKATRYAAEDADATWLL 469

Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            ++L P+             E  L  +   +   G  +D+A    L         +L++ 
Sbjct: 470 HEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHGVLLDLAYLAELGNGFGQRMQELEKR 529

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276
           +  L  G   +    ++L+  LF   GL     T+     +T   VL+   +    A  +
Sbjct: 530 IIELAGGP-FNLNSPKQLEEVLFERLGLQAGKKTKGKTGRSTDNEVLTGLAEEHEIAKLL 588

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            + R   ++      + L +  +  GR+  +      + TGR S      QN+P  +   
Sbjct: 589 LDYR-GLTKLKSTYTDALAKLTDRQGRVHTSYNQAV-TATGRLSSSDPNLQNIPIRTDEG 646

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G  ++ AD + IE RVLA ++ + 
Sbjct: 647 RR-------------------------IREAFIAPPGCVILAADYSQIELRVLAHLSQDP 681

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
               AF   ED++  T +  F + P  VT + R   K +                    G
Sbjct: 682 VFCDAFSQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTIN--------------FGIIYG 727

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                         +     A +        E+   A++++HS 
Sbjct: 728 ------------------------------QGAFSLAKQLGVARNVAEKFIAAYKERHSG 757

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                +    + ++T                            +    GR L   D+ ++
Sbjct: 758 AIAFLDSCIASAKET--------------------------GYVTTILGRKLPIADITSS 791

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                       R            +Q  + DI+ + M+   +A         +++ VHD
Sbjct: 792 N---GNLRSFAERNAI------NYPIQGSAADIIKQAMLGVDRAIRAEGLQSRLIMQVHD 842

Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E  +T+      L    M+     A  +PLK +    K +
Sbjct: 843 ELVFEVLETELEQMRELVNREMSQAV--ALKVPLKVDIQWGKNW 884


>gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001]
 gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001]
          Length = 1047

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 111/726 (15%), Positives = 201/726 (27%), Gaps = 185/726 (25%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
             + +D ET +            A    ++  +              H             
Sbjct: 448  VIAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGD 497

Query: 51   -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
                                 ++LK  LE+     V  N  ++ +VL       I +  +
Sbjct: 498  GGAGADESDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDFSVLHRY---GIDVAPF 554

Query: 94   ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              T++++           +  +             G + I                    
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----ADVAGTGRNKVTFD 602

Query: 151  REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200
            R A      Y   D  VT  +++ ++P    E            L  +   +   G  +D
Sbjct: 603  RVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAID 662

Query: 201  VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257
              +   L+        +L++E++             +++   LF + GL     T +   
Sbjct: 663  RNMLSRLSGDFSQILARLEEEIQEDAG-EKFQVSSPKQIGDVLFGKMGLPGAKKTPSGQW 721

Query: 258  -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
             T   +L    +      +   N  + S+      ++L E  +       T   L A+ T
Sbjct: 722  ATPATLLEELAQAGHDLPKKILNWRQLSKLKSTYTDSLQEHADRGTNRVHTSFALAATTT 781

Query: 317  GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
            GR S      QN+P  +                              +R   +A EGKKL
Sbjct: 782  GRLSSSDPNLQNIPIRTEEGRR-------------------------IRRAFVAPEGKKL 816

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
            + AD + IE R+LA +A      +AFE G D++  T +  F V   Q+T D R   K + 
Sbjct: 817  ISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTIN 876

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                               G++                                  A   
Sbjct: 877  F--------------GIIYGIS------------------------------AFGLADRL 892

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                       K + ++   + +    +        E G                     
Sbjct: 893  GIGREEASAFIKQYFERFPGIRDY---IDTTKRSCREKGYVTTL---------------- 933

Query: 557  NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    GR   Y  + +N      +     R+           +Q  + DI+   M  
Sbjct: 934  -------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTR 977

Query: 617  AT------KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEG 667
                    K    ++L VHDE+V E PD +      ++ H+M   P+ A    +PL  E 
Sbjct: 978  MEDALGAEKLAARMLLQVHDELVFEVPDDEVEATIPVIAHVMEEAPAPALSLSVPLVVEA 1037

Query: 668  YESKRY 673
              +  +
Sbjct: 1038 RAAGNW 1043


>gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505]
          Length = 911

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 197/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F             HD            + 
Sbjct: 335 AFDTETTSLDYMK----------AQLVGMSFAVKAGEAVYLPLAHDYPGAPEQLSLEFVM 384

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           Q L   L + +   V  N  ++++VL       +   +   T++ +              
Sbjct: 385 QKLGPILADENKAKVGQNLKYDKSVLANA-GFALNGIK-FDTMLESYVFNSVGTRHDMDS 442

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    ++                +    ++        Y   D  +T  + +
Sbjct: 443 LALKYLGHKNISFED----------IAGKGKKQLTFNQIELEKAAPYAAEDADITLRLHE 492

Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L  +   I   G  +D  +    +  +     +L++E 
Sbjct: 493 VLWPKIAADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLAAHSMRLGERLIELEKEA 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL +   T     +T + VL       P    +  
Sbjct: 553 FEIAG-EPFNLSSPKQLQVLLFEKLGLPIIKKTPKGAPSTAEEVLQELAHDYPLPKVIIE 611

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+      + L   +N   +   T      + TGR S      QN+P  S     
Sbjct: 612 HR-GLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRSEEGRR 670

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA++G K+V AD + IE R++A ++ ++  
Sbjct: 671 -------------------------IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGL 705

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G D++  T A  F V    VT D R   K +                    G++
Sbjct: 706 LNAFANGLDVHSATAAEVFGVELDDVTTDMRRKAKAVN--------------FGLIYGMS 751

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + ++   V 
Sbjct: 752 ------------------------------AFGLARQLDVPRHEAQHYIDKYFERFPGVL 781

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E      +   +                          N  +    GR L   ++     
Sbjct: 782 EYMETTREKAAE--------------------------NGYVETIFGRRLHLPEINARNG 815

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M++  +           +++ VHDE
Sbjct: 816 ARR---KGAERAAINAP------MQGTAADIIKKAMLSVNRWVHEQAPNTIKLLMQVHDE 866

Query: 632 IVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E            +  LM+     A  +PL  E  E   +
Sbjct: 867 LVFEIKTDCAPEYTKHICELMSQAA--ALDVPLIVEADEGDNW 907


>gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185]
 gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185]
          Length = 935

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 105/704 (14%), Positives = 204/704 (28%), Gaps = 166/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
            +D ET S   +             ++  +F  +          HD V            
Sbjct: 359 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 408

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           + L+  LE+  +  V  N  ++ ++L     + +       T++ +      ++     G
Sbjct: 409 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVA-FDTMLESYVFNSVASRHDMDG 466

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    +E                +    ++        Y   D  +T  + +
Sbjct: 467 LALKYLGHKNISFEE----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 516

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P   KE             L  +   I  +G  +D  L    +  +  +   L+++ 
Sbjct: 517 HLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKA 576

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+   F + G  +   T     +T + VL       P    +  
Sbjct: 577 YDIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILE 635

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L   +N   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 636 HR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 693

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 694 R-------------------------IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 728

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAF  G+D++  T A  F     +VT +QR   K +                    G+
Sbjct: 729 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVN--------------FGLIYGM 774

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  +                                     +     +  ++  V
Sbjct: 775 SAFGLARQLDI------------------------------PRHEAQTYIDTYFARYPGV 804

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                E                                +   +    GR L   ++ +  
Sbjct: 805 LRYMEETRAGA--------------------------ADLGYVSTLFGRRLYLPEIRDRN 838

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHD 630
           +          R            +Q  + DI+ + M+N         +    +++ VHD
Sbjct: 839 AMRRQ---GAERAAINAP------MQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHD 889

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E            +  LM         + L AE      +
Sbjct: 890 ELVFEVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 931


>gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886]
 gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886]
          Length = 931

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 96/708 (13%), Positives = 197/708 (27%), Gaps = 168/708 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             +  D ET S           Y E   ++  +F   +         HD           
Sbjct: 352 DVVAFDTETDSLD---------YME-ANLVGISFAVAEGEAAYLPLAHDYLDAPKQLDRD 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LE+     V  N  ++ +VL    ++ +    +  T++ +           
Sbjct: 402 WVLAEMKLWLEDAGALKVGQNLKYDASVLARY-DIAMRGIAY-DTMLESYVFNSVAGKHD 459

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + ++                L  +    E       +    ++        Y   D  VT
Sbjct: 460 MDSLALRY------------LQHQCISFEEIAGKGKKQLTFNQIELDQAAPYAAEDADVT 507

Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             +   L                 E  L  +   +   G  +   +    +Q + V    
Sbjct: 508 LRLHNALMAQLNNDEKLKVIFEQYEMPLVPVLSRMERHGVLISAEMLAKQSQEIAVRLDT 567

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQA 273
           L++E+  L      +    ++L+  LF + GL         T +T + VL       P  
Sbjct: 568 LEKEVFELAG-EEFNLSSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLP 626

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++   R   ++      + L + +        T      + TGR S      QN+P  +
Sbjct: 627 KRILEYR-GLAKLKSTYTDKLPKMVKPATGRVHTSYHQAVTATGRLSSTDPNLQNIPIRN 685

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   IA  GK ++  D + IE R++A ++
Sbjct: 686 EEGRR-------------------------IRQAFIAPAGKTILAVDYSQIELRIMAHLS 720

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF  G+D++  T A    +  + VT + R   K +                  
Sbjct: 721 GDEALIDAFRHGKDIHAATAAEVMGIDISDVTPEMRRRAKAINF--------------GL 766

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                  A +        ++    + ++
Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQQYMDRYFER 796

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +          +                             +    GR L   ++
Sbjct: 797 YPGVRQYMENTRLQAAE--------------------------QGYVETIFGRRLHLPEI 830

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVL 626
            ++ +      +   R            +Q  + DI+   M+          +    +++
Sbjct: 831 KSSNAMRR---KGAERAAINAP------MQGTAADIIKRAMILVDAWIQQQPEGRVALIM 881

Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE+V E            +  LM S       +PL A+      +
Sbjct: 882 QVHDELVLEVDTEHLAEVEQQVCKLMESAA--LLDVPLVADSGSGANW 927


>gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
 gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482]
          Length = 971

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 95/701 (13%), Positives = 208/701 (29%), Gaps = 160/701 (22%)

Query: 2   ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56
             +  +D ET     +T            ++  +F + ++         D      +   
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRAEAQKIVNE 447

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114
            + A E   V  V  N  ++  VL      ++       T+V            +  + E
Sbjct: 448 FRPAFEKEGVLKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  +    +ELI                K     +     +Y   D  VT ++   
Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNI 554

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           LE               E  L  +   +   G  VD       ++       ++++E+  
Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           L      +    +++   LF +  +      T+T    T + VL S +       ++  +
Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    +     ++ L   +N +     T      + TGR S      QN+P  +   +E 
Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  +G +   AD + IE R++A ++G+   +
Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMI 767

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G+D++  T A+ + ++  +VT++QR+  K     +                G+++
Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGII--------------YGISV 813

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +                                  + +   + + + ++ E
Sbjct: 814 FGLAERMNVD------------------------------RKEAKELIDGYFETYPQIKE 843

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             ++                                    +    GR     D+ +  S 
Sbjct: 844 YMDKSIDLAR--------------------------GQGYIETIFGRKRYLPDINSRNSV 877

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
           +        R            +Q  + DI+   M+   +          ++L VHDE+ 
Sbjct: 878 VRGY---AERNAINAP------IQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDELN 928

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++     +    M +   +   +PL+A+      +
Sbjct: 929 FSVLPEEKEKVQKIVIEEMENA--YRMQVPLRADCGWGSNW 967


>gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36]
 gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36]
          Length = 931

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 203/705 (28%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F   +         HD            + 
Sbjct: 355 AFDTETTSLNYI----------QAELVGLSFAVAEGEAAYLPVAHDYIDAPEQLDRDHVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+++   V  N  ++++VL     +++    +  T++ +           + +
Sbjct: 405 ASLKTLLEDSNAKKVGQNLKYDKSVLANY-GINLAGIAY-DTMIESYVYNSIATRHDMDS 462

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + I+     E       +    ++        Y   D  VT  +
Sbjct: 463 LADKY--------LGHKTISF----EEIAGKGKKQLTFNQIELEQASAYAAEDADVTLRL 510

Query: 172 FKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P            +  E  L  +  ++  +G  +D +     +  +     +L+ 
Sbjct: 511 HNVLWPKIEAEPSLVALFNEVELPLVSILSSVERQGVLIDKSKLDAQSVELGARMLELEA 570

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+  LF++  L +   T     +T + VL       P    +
Sbjct: 571 KAHEIAEQP-FNLSSPKQLQEILFVKMELPVIKKTPKGAASTAEDVLQELALNYPLPKII 629

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   S+      + L   +        T      + TGR S      QN+P  +   
Sbjct: 630 LEYR-SLSKLKSTYTDKLPTLIEEKTGRVHTSYHQAVTATGRLSSSDPNLQNIPVRAGEG 688

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   I   G K V  D + IE R++A ++ ++
Sbjct: 689 RR-------------------------IRQAFIPETGYKYVAVDYSQIELRIMAHLSQDK 723

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F+V    VT DQR   K +                    G
Sbjct: 724 GLLTAFSEGKDIHRATAAEVFSVELDDVTSDQRRSAKAINF--------------GLIYG 769

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                    +        ++    + +++  
Sbjct: 770 MS------------------------------AFGLGRQLNIPQKEAKKYMTRYFERYPG 799

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V    +E  +  +                              +   SGR L   ++   
Sbjct: 800 VLTYMDETRKVAKD--------------------------KGYVETLSGRRLYLPEINAR 833

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVH 629
                 +     R            +Q  + DI+ + M+N              +++ VH
Sbjct: 834 NKM---SQMAAERAAINAP------MQGTASDIIKKAMINVAGWMETVETNSIRMLMQVH 884

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +         +  LM +  S    +PL AE      +
Sbjct: 885 DELVFEIKEEHVEAYVVKIKELMAAAMS--LDVPLLAEAGVGDNW 927


>gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
 gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231]
          Length = 898

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 202/705 (28%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   +          D  ++  +F  +          H             + 
Sbjct: 323 AFDLETTSLNYM----------DAEIVGLSFAVEPARAAYVPVAHIGQGVSPQLERGHVL 372

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           + L+  LE+     +  N  ++ +VL   +++ +   R   T++ +           + +
Sbjct: 373 EQLRPLLEDPRRAKLGQNLKYDMSVLA-HYDIALRGVR-FDTMLESYILDSTATRHDMDS 430

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G   I    K E       +     + A     EY   D  +   +
Sbjct: 431 LALKY--------LGHRTI----KFEDVAGKGAKQLTFDQVAIERATEYAAEDADIALRL 478

Query: 172 FKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P   +           E  L  +   +   G  V   L    +  +     +++ 
Sbjct: 479 HRVLYPKLRQLPGPERVFHAIEMPLLPVLSRMERTGVLVSRELLAAQSAELAQRLAEIEA 538

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
            +         +    ++++  L+   GL           +T + VL       P    +
Sbjct: 539 SVYRAAGC-EFNLGSPKQIQAVLYDRQGLPVLAKTPKGAPSTAESVLQELAATYPLPRMI 597

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
             +R   ++      + L   ++   GR+  + +   A+ TGR S      QN+P  S  
Sbjct: 598 LEHR-ALAKLKSTYTDKLPLLIHPRTGRVHTSYRQAVAA-TGRLSSSDPNLQNIPVRSPE 655

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G +L+  D + +E R++A  +G+
Sbjct: 656 GRR-------------------------IRRGFIARQGYRLLAVDYSQVELRIMAHFSGD 690

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +   +AF  GED++  T A  F  A  QVT +QR   K +                    
Sbjct: 691 ERLHRAFAAGEDIHRATAAEVFATALEQVTAEQRRAAKAIN--------------FGLIY 736

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +      A +   + + +++ 
Sbjct: 737 GMS------------------------------AYGLARQLGIERDAAQHYVERYFERYP 766

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V                                  ++ +    +    GR L   ++  
Sbjct: 767 GVKAFM--------------------------ERIRREARERQYVETVFGRRLYLPEINA 800

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
           + +          R            +Q  + DI+   M+         +    +VL VH
Sbjct: 801 SNAQRRQA---AERTAINAP------MQGSAADIIKRAMVRVDQWLQSEREDVFMVLQVH 851

Query: 630 DEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P    +  A  +   M         +PL  E      +
Sbjct: 852 DELVFEVPTPDVQAVAERIRAFMVGAAE--LSVPLTVEAGWGDNW 894


>gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157]
          Length = 933

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 88/714 (12%), Positives = 189/714 (26%), Gaps = 176/714 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51
           L +D ET    ++             ++  +   +          H              
Sbjct: 348 LAVDTETTGLNEMV----------ADLVGISLCIEPGEACYIPLTHRDGASDDLFGSDAL 397

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                      ++LK  LE+  +  +  N  ++  +        + +     T++++ + 
Sbjct: 398 AEGQMPLDEALKLLKPVLEDPSILKIGQNMKYDAKIFARY---GVDVAPIDDTMLMSYAM 454

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E           G   I      +             +        Y
Sbjct: 455 HAGEHGHGMDTLSERY--------LGHTPIPI----KPLLGSGKSAITFDKVPIDEATAY 502

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  ++K  +P   +          E+ L  +   +   G  VD  +   ++  
Sbjct: 503 AAEDADITLRLWKLFKPQLHRVQVTTVYETLERPLVPVLAQMEMHGIKVDRDVLSRMSNA 562

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSN 266
              +   L+ E+  L      +     +L   LF + GL           +T   VL   
Sbjct: 563 FAQKMAALEAEIHELAG-ETFNVGSPAQLGEILFEKMGLEGGKKGKTGKYSTGADVLEDL 621

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   +V + R   S+      + L   +N D     T   +  + TGR +      
Sbjct: 622 ATEHELPRKVLDWRQ-LSKLKSTYTDALQTHINPDTGRVHTSYAITGANTGRLASTDPNL 680

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +                              +R   +A  G  LV  D + IE 
Sbjct: 681 QNIPVRTEEGRR-------------------------IREAFVAEPGNVLVSLDYSQIEL 715

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +A      +AF  G D++  T +  F+V   ++T + R   K +           
Sbjct: 716 RILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRKAKAIN---------- 765

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A          +  
Sbjct: 766 ----FGVIYGIS------------------------------GFGLARNLRIPRAEAQGF 791

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + ++   +    ++     ++                          +  +    GR
Sbjct: 792 IDRYFERFPGIRRYMDDTIAFAKE--------------------------HGYVQTLFGR 825

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622
            +   ++               R            +Q  + D++   M+           
Sbjct: 826 KIHTPEINAK----GPHAGFARRAAINAP------IQGTAADVIRRAMVRMPEAIDGLPA 875

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673
            ++L VHDE++ E  +        +   +M + P  A    + L  +  +   +
Sbjct: 876 KMLLQVHDELLFEVAEDAVDQTIEIARDVMENAPDPAVKLDVKLTVDAGKGANW 929


>gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 923

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 93/700 (13%), Positives = 204/700 (29%), Gaps = 159/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57
             L +D ET     ++            ++  +F  +++         D      +    
Sbjct: 351 DFLSLDTETTGTDPIS----------AKLVGLSFSVEENQAFYVPIPQDFEEAQKIVNEF 400

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   E+  +  +  N  ++  VL+    + +       T++            +  + E 
Sbjct: 401 KSVYEDERILKIGQNIKYDLMVLQNY-GITLK-GEIFDTMIAHYLLQPELRHGMDYLAEV 458

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               + +    +ELI                K           EY   D  +T ++    
Sbjct: 459 Y--LNYQTIHIEELIG---------PKGKNQKNMADLPPSQVYEYACEDADITLKLKNVF 507

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L  +   +   G C+D       + +   E  +L++E+ +L
Sbjct: 508 EPKLKEEGCYDLFREVEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNRLEEEIHAL 567

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL + +   P   ++  +R
Sbjct: 568 AG-EPFNIASPKQVGEVLFEKLKISEKPKKTKTGQYVTSEEVLETLRTRHPIVEKILEHR 626

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L + +N +     T      + TGR S      QN+P  +   +E  
Sbjct: 627 -GLKKLLGTYIDALPKLINPETGHIHTSFNQTITTTGRLSSSNPNLQNIPVRNEEGKE-- 683

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I   G +   AD + IE R++A ++G+   ++
Sbjct: 684 -----------------------IRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIE 720

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T A+ +     +VT+++R+  K                      G+ + 
Sbjct: 721 AFREGHDIHAATAAKIYKKPLEEVTREERSKAKTANF--------------GIIYGITVF 766

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A                                        + +   +   + +V E 
Sbjct: 767 GLAER------------------------------MNVSRAEAKELIDGYFTTYPKVKEY 796

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             +  +   +                                   R    RD+ ++ + +
Sbjct: 797 MQKSIETARE--------------------------KGYTETIYHRKCYLRDINSHNAVV 830

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                   R            +Q  + DI+   M+              ++L VHDE+  
Sbjct: 831 RGY---AERNAINAP------IQGSAADIIKIAMIAIYHRFQKEHIRSKMILQVHDELNF 881

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                ++     +    M     +   +PL+A+    + +
Sbjct: 882 SVYPEEKERVQQIVIEEMERA--YTMQVPLEADYGWGRNW 919


>gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195]
 gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195]
 gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678]
          Length = 921

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 105/704 (14%), Positives = 203/704 (28%), Gaps = 166/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
            +D ET S   +             ++  +F  +          HD V            
Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 394

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           + L+  LE+  +  V  N  ++ ++L     + +       T++ +      ++     G
Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVA-FDTMLESYVFNSVASRHDMDG 452

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    +E                +    ++        Y   D  +T  + +
Sbjct: 453 LALKYLGHKNISFEE----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 502

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P   KE             L  +   I  +G  +D  L    +  +  +   L+++ 
Sbjct: 503 HLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKA 562

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+   F + G  +   T     +T + VL       P    +  
Sbjct: 563 YDIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILE 621

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L   +N   GR+        A+ TGR S      QN+P  +    
Sbjct: 622 HR-SLSKLKSTYTDKLPLMVNAKTGRVHTNYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 679

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 680 R-------------------------IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAF  G+D++  T A  F     +VT +QR   K +                    G+
Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVN--------------FGLIYGM 760

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  +                                     +     +  ++  V
Sbjct: 761 SAFGLARQLDI------------------------------PRHEAQTYIDTYFARYPGV 790

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                E                                +   +    GR L   ++ +  
Sbjct: 791 LRYMEETRAGA--------------------------ADLGYVSTLFGRRLYLPEIRDRN 824

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHD 630
           +          R            +Q  + DI+ + M+N         +    +++ VHD
Sbjct: 825 AMRRQ---GAERAAINAP------MQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHD 875

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E            +  LM         + L AE      +
Sbjct: 876 ELVFEVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917


>gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 927

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 200/700 (28%), Gaps = 159/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57
             + +D ET S   +          +  ++  +F  ++                 +    
Sbjct: 355 DVISLDTETTSTNAI----------EAQLVGLSFAIEEKKAYYVPVPEQADEAQNIVNRF 404

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   EN     V  N  ++  VL+    + +       T+V            +  + E 
Sbjct: 405 KAIYENPKTLKVGQNIKYDLEVLRNY-GIALQ-GPLFDTMVAHYLLQPELRHNMDFMAEV 462

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               + +      LI                K     A      Y   D  +T ++   L
Sbjct: 463 Y--LNYETVHIDALIG---------PKGKAQKNMRELAPSEVYNYACEDADITLQLKNVL 511

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P              E  L  +   +   G  +D A     +Q+      +L+QE+   
Sbjct: 512 QPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQA 571

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF E  +      T+T    T + VL + +   P    + + R
Sbjct: 572 AG-KTFNVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHILDYR 630

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L + +N       T      + TGR S      QN+P      +E  
Sbjct: 631 -ALKKLLGTYVDALPKLINPRTGHIHTSFNQAVTATGRLSSSDPNLQNIPVRGEDGKE-- 687

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R C I  EG +   AD + IE RV+A ++ +   L 
Sbjct: 688 -----------------------IRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLD 724

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T A+ +N   ++VT+D+R   K     +                G+ + 
Sbjct: 725 AFREGYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGII--------------YGITVF 770

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  +    A                                +++   + +   +V + 
Sbjct: 771 GLADRLNIERA------------------------------EAKQLIDGYFKMFPQVQQY 800

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             +  +                              N  +     R     D+ +  +  
Sbjct: 801 MEQAKETAR--------------------------ANGYVETFFHRRRYLPDINSGNA-- 832

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            T      R            +Q  + DI+   M+              ++L VHDE+  
Sbjct: 833 -TVRAIAERNAINAP------IQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNF 885

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               T++     +    M +   +   +PL A+      +
Sbjct: 886 SVLPTEKEQVERIVMEEMQAA--YLLDVPLVADSGWGNNW 923


>gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7]
 gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7]
          Length = 922

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 101/704 (14%), Positives = 201/704 (28%), Gaps = 166/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S   +             ++  +F  +          HD              
Sbjct: 346 AVDTETTSLDYMV----------AELVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTAL 395

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           + L+  LE+  +  V  N  ++ +VL     + +       T++ +      ++     G
Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLANA-GIQLK-GVVFDTMLESYVFNSVASRHDMDG 453

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    ++                +    ++        Y   D  +T  + +
Sbjct: 454 LALKYLGHKNIAFED----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 503

Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L  +   I  +G  +D  L    +  +  +  +L+ + 
Sbjct: 504 HLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETKA 563

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+   F + G  +   T     +T + VL       P    +  
Sbjct: 564 YDIAG-EKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVILE 622

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   ++      + L   +N   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 623 HR-SLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 680

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 681 R-------------------------IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAG 715

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAF  G+D++  T A  F      VT +QR   K +                    G+
Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVN--------------FGLIYGM 761

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  +                                     +     +  ++  V
Sbjct: 762 SAFGLARQLDI------------------------------PRNEAQTYIDTYFARYPGV 791

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                E   +  +                             +    GR L   ++ +  
Sbjct: 792 LRYMEETRASAAE--------------------------LGYVSTLFGRRLYLPEIRDRN 825

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHD 630
           +          R            +Q  + DI+ + M++              +++ VHD
Sbjct: 826 AMRRQA---AERAAINAP------MQGTAADIIKKAMISIADWIKTDTQGEITMIMQVHD 876

Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E            +  LM         + L AE      +
Sbjct: 877 ELVFEVDADKAETLKLKVCELMAKAA--NLDVELLAEAGIGDNW 918


>gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
 gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and
           3'->5' exonuclease [Psychromonas ingrahamii 37]
          Length = 938

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 105/711 (14%), Positives = 202/711 (28%), Gaps = 172/711 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHDP---- 51
             D ET S   +             ++  +F    +                 HD     
Sbjct: 354 SFDTETTSLDYM----------QARIVGLSFAVQSNVGSDEQPIIEAAYLPLAHDYIDAP 403

Query: 52  ------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                    + L+  LE+     V  N  ++R+VL     +++   +   T++ +     
Sbjct: 404 KQLDLTTTLEKLRPLLESEKYKKVGQNLKYDRSVLLNH-GIELKGIK-FDTMLESYVLDS 461

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                    ALK        G + I+     E       +  P ++ +      Y   D 
Sbjct: 462 TGRHDMDTLALKY------LGHQCISF----EEIAGKGKKQLPFNQISIIEAAPYAAEDA 511

Query: 166 TVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
            VT  +  +L               + E  L  +   I   G  +D  L    +  +   
Sbjct: 512 DVTLRLHLQLFEQLSAEPKLLSVFNNIELPLLTVLSDIERGGVEIDSDLLTKQSAEIGKR 571

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLT 270
             +L+            +    ++L+T L+ E  L +   T     +T + VL       
Sbjct: 572 LLELEALAYEEAG-KPFNLSSPKQLQTILYDELELPVLKKTPKGAPSTAEEVLQELALTY 630

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    +  +R   S+      + L + +N       T      + TGR S      QN+P
Sbjct: 631 PLPKLIIEHR-GLSKLKSTYTDKLPKMVNEKTGRLHTSYQQAVTVTGRLSSTDPNLQNIP 689

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
             S                              +R   IA  G K+V AD + IE R++A
Sbjct: 690 IRSAEGRR-------------------------IRQAFIAQPGYKIVAADYSQIELRIMA 724

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ ++  L AF TG+D++  T +  F+V   +VT +QR   K +               
Sbjct: 725 HLSQDKGLLDAFSTGKDIHKATASEVFSVPLDEVTTEQRRSAKAINF------------- 771

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G++                                  A +        +     +
Sbjct: 772 -GLIYGMS------------------------------AFGLAKQLNIGRHEAQLYMDKY 800

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
             ++  V     +      +                             +    GR L  
Sbjct: 801 FNRYPGVLIYMEDTRSLANE--------------------------KAYVETILGRRLQL 834

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------D 623
            ++ +    L    +   R            +Q  + DI+ + M++              
Sbjct: 835 PNIKSRNGMLK---KAAERAAINAP------MQGTAADIIKKAMIDMADWIAQKSPGSVQ 885

Query: 624 IVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +++ VHDE+V    +    +    +  +M         +PL A+      +
Sbjct: 886 MLMQVHDELVFSIKEELVESYTKEIQAIMAKAAD--LDVPLIADAGVGDNW 934


>gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583]
 gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583]
          Length = 968

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/715 (14%), Positives = 215/715 (30%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPVM 53
               D ET S   +             ++ F+     +        H            +
Sbjct: 380 YFSFDTETTSLDPM----------QAKLVGFSLALQPNKAAYIPLEHIEGGNDLFGGERI 429

Query: 54  PQV---------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                       LK  LEN  V  +  N  ++  V++     DI I  +  T++L+    
Sbjct: 430 VGQIETQRALALLKPILENQAVLKIGQNMKYDWLVMRQY---DITIRSFDDTMLLSYVLD 486

Query: 105 ---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   IA     +   C   +     +   +    Y 
Sbjct: 487 AGISTHGMDVLSERW--------LGHTPIAY----KNLTCDGKKIVSFAQVDLKQATLYA 534

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  +T  +++ L+P              ++ L  +   + +RG  VD  +   L+  +
Sbjct: 535 AEDADITLRLWQVLKPQLVAQGMTKIYERLDRPLIEVLARMEERGILVDRQILSCLSGEL 594

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                 L++E+  L      +    ++L   LF + GL     T+    +T  ++L    
Sbjct: 595 AQAALSLEEEIYQLAG-EQFNIASPKQLGDILFSKIGLPGGAKTKGGQWSTSAQILEELA 653

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   ++       T   L  + TGR S      Q
Sbjct: 654 AEGHMLPRKIVDWRQIAKLKSTYTDALPSYISPKTGRVHTNYSLATTSTGRLSSSEPNLQ 713

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IASEG  L+ AD + IE R
Sbjct: 714 NIPIRTIEGRK-------------------------IRTAFIASEGCLLLSADYSQIELR 748

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +A      +AF  G+D++  T ++ F VA  +++ D R   K +            
Sbjct: 749 LLAHIADITALKEAFAQGQDIHAMTASQMFGVAIERMSSDVRRRAKAINF---------- 798

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++                                  A +            
Sbjct: 799 ----GIIYGIS------------------------------AFGLANQLGISREEASHYI 824

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   +            Q                          +  +    GR 
Sbjct: 825 RVYFERFPGIQSYMEATKIFARQ--------------------------HGYVETIFGRR 858

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG-- 621
           + Y ++               R            +Q  + DI+   M+       K G  
Sbjct: 859 IHYPEIKARD---RQVRAFNERAAINAP------IQGSAADIIRRAMIQMEGALEKEGLS 909

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P  + E   +++  +M +   P+ +  +PL+ +   ++ +
Sbjct: 910 AKMLLQVHDELIFEIPKAESEKTKAIVKKVMENATMPALSLSVPLEVKVMVAQNW 964


>gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164]
 gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82]
 gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164]
          Length = 919

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/702 (15%), Positives = 194/702 (27%), Gaps = 167/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            ID ET S                 ++ F+  FD          HD            + 
Sbjct: 348 AIDTETTSLD----------YRVAEMVGFSVAFDAKDAYYVPLAHDYAGAPEQLNREQVL 397

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             +K  LEN  V  + H+  ++  +      +++    +  T++ +           +  
Sbjct: 398 AQIKPILENDQVEKIGHHLKYDAHIFANH-GIELK-GWFFDTMLASYVLNSVATRHGMDD 455

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           V                L       E       + K  ++    +   Y   D  VT  +
Sbjct: 456 VARLY------------LSHLTTTFEQVAGKGAKQKSFNQIELEVASPYAAEDAHVTYRL 503

Query: 172 FKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQ 220
           ++ L        EL  +   I              G  +D      L+        +L+Q
Sbjct: 504 YEVLAEKLKAHPELCNILYNIEMPVARILTGMEEDGIRLDHGFLDQLSIEFAKTMQELEQ 563

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    +++   LF + G+     T     +T + +L       P A  +
Sbjct: 564 QAMEMAG-ETFNIASPKQVGEVLFEKLGIKGGKKTTTGQFSTSESILEKI--EHPIAAVI 620

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   ++      + LV+  N+      T      + TGR S      QN+P      
Sbjct: 621 LEHR-SLAKLKSTYTDALVKQSNNSTHRVHTSYHQALTATGRLSSSDPNLQNIPIRGEIG 679

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G+ L+ AD + IE R++A  + + 
Sbjct: 680 R-------------------------QIRKAFIAPAGRVLLAADYSQIELRLMAHFSQDD 714

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A    +A   VT DQR   K +                    G
Sbjct: 715 ALLDAFRHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVN--------------FGLLYG 760

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                       F     +   K +  ++  
Sbjct: 761 MSEFGLIRQ------------------------------LGFTRQESQDYIKQYFHRYPG 790

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           + E      Q   +                             +    GR L   D+   
Sbjct: 791 IYEYMQRTRQLALE--------------------------QGFVDTLFGRRLYTPDIDAR 824

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEI 632
              +    +   R             Q  + DI+   M+   K        ++L VHDE+
Sbjct: 825 NMMVR---KAAERAAINAPL------QGSAADIIKLAMIAVDKILPKDQARLLLQVHDEL 875

Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E  +      +  L  +M S       +PL  E  +   +
Sbjct: 876 VFEVDENIADELAPQLAEVMESVVE--ISVPLLVEVGKGCNW 915


>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 942

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 197/702 (28%), Gaps = 166/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQV 56
            +D ET S            A    ++  +              H          ++   
Sbjct: 370 AVDTETTSLD----------AFAAELVGISLSVKPGEACYIPVAHRNGEAQLDRDLVLAR 419

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGE 114
           +K  LE+     V  N  ++  +      + +       TL+ +      LP  + ++ E
Sbjct: 420 MKSWLESATHLKVGQNLKYDSHIFANY-GITLK-GVVFDTLLESYVLESHLPHNMDSLAE 477

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                      G + I      E             +   ++  +Y   D  +T  +   
Sbjct: 478 RH--------LGMKTIRY----EEVCGKGVHQIGFDQVDLKIATDYAAEDADITLRLHLE 525

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P   +           E     +   +   G  +D AL     Q V     +L+ E+ 
Sbjct: 526 LWPQIQESPGLLYVYEKVEMPAMRVLGIMERNGIRIDSALLAKQGQQVGKRLLELEGEIH 585

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L      + +  +++   LF +  L +   T +    T + VL    +  P   ++ + 
Sbjct: 586 KLAGQP-FNIQSPKQIAEILFGQLELPVIKKTPSGAPSTDEEVLQKLAEDYPLPARILDY 644

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   ++     +  L    +   GR+        A  TGR +      QN+P  +     
Sbjct: 645 R-SLAKLMSTYIEKLPRMADPKTGRVHTNFSQATA-VTGRLASSDPNLQNIPVRTEEGRR 702

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   I +EG KL+ AD + IE R++A +A ++  
Sbjct: 703 -------------------------IREAFIPAEGCKLLSADYSQIELRIMAHIAEDENL 737

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A  F V    V+ +QR                          G++
Sbjct: 738 LTAFRDGKDVHQATAAEIFGVPLDDVSSEQRRYA--------------KVINFGLIYGMS 783

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A       +A +     +  ++  V+
Sbjct: 784 ------------------------------AFGLAGNLGIECSAAQNYIAKYFDRYPGVA 813

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +          +                          N  +    GR L   ++  +  
Sbjct: 814 QYMERTRLEARE--------------------------NGYVETVFGRRLWSPEIKGSNG 847

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632
                     R            +Q  + D++   M+              ++L VHDE+
Sbjct: 848 PRRQ---GAERAAINAP------MQGTAADLIKLAMIAVEDWFEKEQLKTKMLLQVHDEL 898

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V + P  +     + L +LM         +PL         +
Sbjct: 899 VFDVPLDEIELLQAKLPNLMCHVAQ--LKVPLAVSIGIGDNW 938


>gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
 gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z]
          Length = 956

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 98/728 (13%), Positives = 204/728 (28%), Gaps = 190/728 (26%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------- 49
           + +D ET S   +T            ++  +FG ++         H              
Sbjct: 357 IAVDTETDSLDAMT----------AELVGISFGLENGEACYIPLAHVHEVAEAEEQAQAD 406

Query: 50  ---------------------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
                                       LK  LEN D+  +  N  ++ T+      + +
Sbjct: 407 LFAEPKATGKTSWHRLPDQLNREDCLARLKPVLENADIRKIGQNLKYDLTIFANH-GIQV 465

Query: 89  PIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                  T++ +          +  + E           G + I+     ET        
Sbjct: 466 QGVA-FDTMLESYVLNSTGRHNMDDLAERY--------LGHQTISF----ETLAGKGKNQ 512

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTINDR 195
               +       EY   D  VT ++ + L                 E  L  +   I   
Sbjct: 513 LTFDKIPLAQAAEYAAEDADVTMKLHQTLWAELEKTPTLTTLFKDIELPLVSVLSRIERN 572

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----L 251
           G  +D       +Q      T L+ +   +      +    ++L+  LF +  L      
Sbjct: 573 GVLIDAQALRKQSQEFGERLTALEAKAHEIAG-EAFNLASPKQLQEILFNKLHLPVLQKT 631

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
                +T + VL            +  +R   ++      + L + +N       T    
Sbjct: 632 PKGDPSTKEEVLEELAFDHELPKLLVEHR-GLAKLKSTYTDKLPQMINPHTGRVHTSYHQ 690

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             + TGR S      QN+P  +                              +R   +A 
Sbjct: 691 AVTATGRLSSTDPNLQNIPIRNEEGRR-------------------------IRQAFVAR 725

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           +G +++ AD + IE R++A ++G++    AF  G D++ +T +  F +    V+ +QR  
Sbjct: 726 DGYRIIAADYSQIELRIMAHLSGDKGLTTAFVEGRDIHRSTASEIFGIPLEDVSAEQRRS 785

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +                    G++    +  +                         
Sbjct: 786 AKAINF--------------GLIYGMSAFGLSRQLAI----------------------- 808

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       ++    + Q++  V    +++ +  +                      
Sbjct: 809 -------SRMEAKKYMDLYFQRYPNVQTFMHDIQEKAK---------------------- 839

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +    GR L   D+ +  +   +  +   R            +Q  + DI+ 
Sbjct: 840 ----AQGFVETLFGRRLYLPDIKSGNA---SRRKGAERVAINAP------MQGTAADIIK 886

Query: 612 EGMMNATK-----AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665
             M++            +++ VHDE+V E   +  EF + ++   M +       +PL  
Sbjct: 887 RAMIDIDHVIAGDEDILMIMQVHDELVFEVRSEKVEFYSELIKQKMETAAQ--LDVPLIV 944

Query: 666 EGYESKRY 673
           E      +
Sbjct: 945 EAGVGANW 952


>gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
 gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3]
          Length = 933

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 86/714 (12%), Positives = 187/714 (26%), Gaps = 176/714 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51
           + +D ET S  ++T            ++  +   +          H              
Sbjct: 348 VAVDTETTSLNEMT----------ADLVGISLAVEPGAACYIPLGHRDGDAGDLFGSDKL 397

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                       +LK  LE+  +  +  N  ++  +        + +     T++L+ + 
Sbjct: 398 AEGQLPLQQTLDLLKPMLEDPAILKIGQNMKYDAKIFARY---GVAVAPIDDTMLLSYAM 454

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E              L       +             + A      Y
Sbjct: 455 HGGLHGHGMDTLSERY------------LSHTPIPIKPLLGSGKSAITFDKVAIDEATAY 502

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  +++  +P   +          E+ L  +   +   G  VD  +   ++  
Sbjct: 503 AAEDADITLRLWQLFKPQLHRAQVTTVYETLERPLVPVLAEMEMHGVKVDREVLSRMSNA 562

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSN 266
              +   L+ E+  L      +     ++   LF +  L           +T   VL   
Sbjct: 563 FAQKMAGLEAEIHELAG-EPFNVGSPAQVGEILFDKMSLEGGKKGKTGKYSTPADVLEDL 621

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   ++ + R   S+      + L   +N D     T   +  + TGR +      
Sbjct: 622 ATEHELPARILDWRQ-LSKLKSTYTDALQTHINPDTGRVHTSYSITGANTGRLASTDPNL 680

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +                              +R   +A  G  L+  D + IE 
Sbjct: 681 QNIPVRTEEGRR-------------------------IREAFVAEPGNVLLSLDYSQIEL 715

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +A      +AF  G D++  T +  F+V   Q+T + R   K +           
Sbjct: 716 RILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDQMTPEVRRRAKAINF--------- 766

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A          +  
Sbjct: 767 -----GVIYGIS------------------------------GFGLARNLRIPRAEAQEF 791

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + ++   +    ++     ++                          +  +    GR
Sbjct: 792 IDRYFERFPGIRTYMDDTIAFAKE--------------------------HGFVQTLFGR 825

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622
            +   ++               R            +Q  + D++   M+           
Sbjct: 826 RIHTPEINAK----GPHAGFARRAAINAP------IQGTAADVIRRAMVRMPDAIRDLPA 875

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
            ++L VHDE++ E  +   E   +    +M      A    + L  +      +
Sbjct: 876 KMLLQVHDELLFEVAEEAVEDTIAAARDIMEGAADPAVRLDVRLVVDAGRGANW 929


>gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 930

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 209/705 (29%), Gaps = 165/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + ID ET S   +             ++  +F  ++         HD           
Sbjct: 354 KCIAIDTETDSLDYMV----------AHLVGVSFALENGEAAYLPLRHDYLGAPQQVDFQ 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
               +LK  LEN ++  V  N  ++ ++      +++    +  T++L+          +
Sbjct: 404 TALSLLKPVLENPEIHKVGQNIKYDLSIFARH-GIEVQGVSY-DTMLLSYVLDSTGRHNM 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G + I      E            ++       EY   D  +T 
Sbjct: 462 DELAKRY--------LGHQTIHF----EDIAGKGKAQLTFNQIPLEQAAEYAAEDADITM 509

Query: 170 EIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L               + E  L  +   I   G  +D     + +Q + V  T L
Sbjct: 510 KLQQVLWEKVAAQPELVKLYQTMELPLASVLSRIERHGVLIDSDALFSQSQQIGVRLTAL 569

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274
           +Q+   L      +    ++L+  LF +  L +   T     +T + VL           
Sbjct: 570 EQQAYELAGQQ-FNLASTKQLQEILFDKLSLPVLKKTPKGAPSTNEEVLEELAYEHALP- 627

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L   +N D     T      + TGR S      QN+P  + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPLMVNKDTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG +++ AD + IE R++A ++ 
Sbjct: 688 EGRR-------------------------IRQAFIAPEGYQIMAADYSQIELRIMAHLSQ 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF  G+D++ +T A  F +  AQV+ +QR   K +                   
Sbjct: 723 DKGLINAFNEGKDIHRSTAAEIFGIPLAQVSSEQRRSAKAINF--------------GLI 768

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    +                                        ++    + Q++
Sbjct: 769 YGMSSFGLSRQ------------------------------LGIPRHEAQKYMDLYFQRY 798

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V    +++ +  +                              +     R L   D+ 
Sbjct: 799 PGVQAFMHDIRETAK--------------------------AQGYVTTLFDRRLYLPDIQ 832

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
           ++ +      +   R            +Q  + DI+   M+   +         +++ VH
Sbjct: 833 SSNAIRR---KAAERVAINAP------MQGTAADIIKRAMITLDREIAGQPDIKMIMQVH 883

Query: 630 DEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E       +   +    M         +PL  +    K +
Sbjct: 884 DELVFEVRTDKIEHFRTIIKTTMEQAAQLV--VPLIVDVGVGKNW 926


>gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1]
          Length = 897

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/702 (15%), Positives = 212/702 (30%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S              +  ++  +F   +         H             + 
Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK    ++    VAHN  F+  VL     ++I   +   T+++A              
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +      K   G E IA             + +   +    +  +Y   D  +T  +F  
Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
            + L  +++ L+ L   +              G  +D       +  ++    +L+ +  
Sbjct: 481 FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +     +L+  LF + GL     T     +T + VL    +    A  +   
Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++++GR+  +    G + TGR S      QN+P  S    + 
Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA +G  +V AD + IE R++A ++ ++  L
Sbjct: 657 ------------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLL 692

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF    D++  T A    ++  +V+ +QR   K +                    G++ 
Sbjct: 693 KAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  ++                                    +     +  ++  V E
Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q                          N  +    GR L   ++ +    
Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632
                    R            +Q  + DI+ + M+N          +   +V+ VHDE+
Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853

Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E      E   + +  +M +       +PL+      K +
Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
 gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1]
          Length = 923

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 109/705 (15%), Positives = 196/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQLDRE 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  +++ +           
Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 505 YRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEG 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P A
Sbjct: 565 LENQAMEI-ADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLA 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + LVE  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTRQESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKIAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  + K +
Sbjct: 877 DELVFEADQNIAEELSKQIAKVMESVVE--ISVPLVVEVGQGKNW 919


>gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG]
 gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG]
          Length = 897

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 211/702 (30%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S              +  ++  +F   +         H             + 
Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELEFVL 372

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK    ++    VAHN  F+  VL     ++I   +   T+++A              
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +      K   G E IA             + +   +    +  +Y   D  +T  +F  
Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNY 480

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
            + L  +++ L+ L   +              G  +D A     +  ++    +L+ +  
Sbjct: 481 FKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKCY 540

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L            +L+  LF + GL     T     +T + VL    +    A  +   
Sbjct: 541 NLAGQ-EFKLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++++GR+  +    G + TGR S      QN+P  S    + 
Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G  +V AD + IE R++A ++ ++  L
Sbjct: 657 ------------------------IREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLL 692

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF    D++  T A    ++  +V+ +QR   K +                    G++ 
Sbjct: 693 KAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  ++                                    +     +  ++  V E
Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q                          N  +    GR L   ++ +    
Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632
                    R            +Q  + DI+ + M+N          +   +V+ VHDE+
Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853

Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E      E   + +  +M +       +PL+      K +
Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
 gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503]
          Length = 940

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 97/715 (13%), Positives = 196/715 (27%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52
            + ID ET +   +             +   +F             H             
Sbjct: 352 IIAIDTETDNLEGMK----------ANLCGISFSIVPGKAYYVPVGHGQTDLSLDDPEHS 401

Query: 53  -------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                     +LK  L +  +  V  N  ++  +L+     DI +  +  T++L+ +   
Sbjct: 402 QQMSEATALDILKPVLLDPSILKVGQNLKYDLLILRE---RDIDVVGYDDTMLLSYAADC 458

Query: 106 P----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + +           G E I      +       + K       +    Y 
Sbjct: 459 GFASLHGMDELSKRH--------LGHEPIPY----KEIVGTGKKQKTFGDVPIKDAYIYA 506

Query: 162 KGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +   L+             + ++ L  +   +   G  VD      L+   
Sbjct: 507 AEDADVTLRLHTILKSRAIESQVYTVYETMDRPLVSVITDMERAGIKVDRDRLSALSGEF 566

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  +  +  +      +    +++   LF + GL     T+    +T    L +  
Sbjct: 567 AQRMAAHEAAVHDIAG-ERFNLASPKQIGDILFGKLGLPGGKKTKTGAWSTAADTLETLA 625

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +  Q   +    ++      + L E+++       T   L ++ TGR S      Q
Sbjct: 626 ADGAEIAQEILSHRGLAKLKGTYTDALSESIHPKTGRVHTSFSLASTTTGRLSSNDPNLQ 685

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R   I  +G  L+ AD + IE R
Sbjct: 686 NIPIRTEDGRK-------------------------IREAFIPEDGNVLISADYSQIELR 720

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +A     ++AF  G D++  T A  F V    +    R   K +            
Sbjct: 721 LLAHIAEIGPLIEAFHQGLDIHAMTAAEVFGVPLEGMDPSIRRQAKAIN----------- 769

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++                                  A              
Sbjct: 770 ---FGIIYGIS------------------------------AFGLARNLGIGRDEASLFI 796

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           K + ++   +    +E  +                              +  +    GR 
Sbjct: 797 KRYFERFPGIKAYMDETIEGAR--------------------------VHGYVETLFGRR 830

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621
               ++   +           R+           +Q  + DI+   M+         +  
Sbjct: 831 SHTPNIKAKQP---NIRMGAERQAINAP------IQGSAADIVKRAMIRVPAALAAHRLS 881

Query: 622 YDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE+V E P    +  A++L  +M     P+ +  +PL  E  +   +
Sbjct: 882 AKMLLQVHDELVVECPADQADETAAVLKDVMEGAAGPALSLSVPLVVEAGQGASW 936


>gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
 gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633]
          Length = 924

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 100/715 (13%), Positives = 204/715 (28%), Gaps = 172/715 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
             + +D ET +   +             ++  +     +        H+           
Sbjct: 337 RVIAVDVETDALSAVAS----------RLVGVSLATAPNEACYIPLGHEGGDLADGGMKP 386

Query: 52  ------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                      LK  LEN  +  V  N  ++  V +      + +  +  T++++     
Sbjct: 387 DQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRY---GVRVAPYDDTMLISYVQAA 443

Query: 106 P---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                 +  + E           G   I+     +         K       +   EY  
Sbjct: 444 GLHNHGMDELAERH--------LGHTCISF----KEVCGTGKSQKRFSEIDLKTATEYAA 491

Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            D  +T  +++ L+             + E+ L  +   +   G  VDVA    L+    
Sbjct: 492 EDADITLRLWELLKAGLAGKGLSTVYETLERPLPQVLTDMELAGVKVDVAQLSRLSSDFA 551

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268
            +  + ++    L      +    +++   LF E GL     T++    T   VL     
Sbjct: 552 QKMAEAEETAHKLAGTK-FNLGSPKQIGEILFGEMGLPGGKKTKSGAWSTDAAVLDELAA 610

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                 +      + S+      + L +A+N +     T   L A+ TGR S      QN
Sbjct: 611 QGHDLPKALLTWRQFSKLKSTYSDALKDAINPNTGRVHTSFSLAATTTGRLSSSEPNLQN 670

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +    +                         +R    A  G  +V AD + IE R+
Sbjct: 671 IPIRTEEGRK-------------------------IREAFTAEPGHVIVAADYSQIELRL 705

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A  +   +AF  G+D++  T +  F V    +    R   K +             
Sbjct: 706 LAHIADVEALKQAFREGQDIHALTASEMFGVPLENMDPTTRRNAKAINF----------- 754

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G++                                  A          +    
Sbjct: 755 ---GIIYGIS------------------------------AFGLANNLGIGRDEAKSYID 781

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           ++ +K   + +  + +    +                              +    GR +
Sbjct: 782 SYFKKFPGIKDYMDAMKDEAK--------------------------AKGCVSTIFGRRI 815

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGY 622
               + +    +   T    R+           +Q  + DI+   M+             
Sbjct: 816 HLPGIKDKNPSVRQFT---ERQAINAP------IQGAAADIIRRAMVRMPGALSDAGLKT 866

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN--PSWAKGLPLKAEGYESKRYR 674
            ++L VHDE+V E P+++      L   +M++   P+    +PL+ E   +  + 
Sbjct: 867 RMLLQVHDELVFEAPESEADQVIKLVTEVMSTAALPAQNLSVPLEVEAKAASTWG 921


>gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 976

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 104/720 (14%), Positives = 216/720 (30%), Gaps = 179/720 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------- 49
           L  D E  S   +             ++  +F             H              
Sbjct: 382 LAFDTEASSLSAMKC----------DLVGVSFATRAGRAAYVPLAHVSPSGEADLLSDKA 431

Query: 50  -----DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
                 P +P      +LK  LE+  V  +  N  ++  V++      I +  +  T+++
Sbjct: 432 VEDEIGPQLPIDEALAILKPVLEDDAVLKIGQNVKYDYLVMRRH---GITMAPFDDTMLI 488

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEE---GKELIARFCKGETHECLYDRNKPNHREAWRL 156
           + +    ++L            ++ E   G + ++     +         +P    A   
Sbjct: 489 SYALDASASLA------GHGMDELSERFLGHKPMSY----KELCGSGKGARPIAACAIDK 538

Query: 157 FGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHT 206
              Y   D  VT  +++ L+P              E+ L  +   + +RG  VD  +   
Sbjct: 539 VTAYAAEDADVTLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEERGIKVDRQILSR 598

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262
           L+     ++  L+ E+  +      +    ++L   LF + GL     T++    T  RV
Sbjct: 599 LSGRFAQKQAGLEAEIAEIAG-ETFNPGSPKQLGEVLFGKLGLPGGKKTKSGQWSTDVRV 657

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L           +   +  + ++      +TL   M++ GR+  +     ++ TGR S  
Sbjct: 658 LEDLAAEGHPLPRRIVDWRQLTKLKGTYTDTLPGHMDAQGRIHTSYSMA-STTTGRLSSS 716

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P  +                              +R+  +A  G  LV AD +
Sbjct: 717 EPNLQNIPVRTEEGRA-------------------------IRTAFVAPAGHSLVSADYS 751

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA +A      +AF  G D++  T +  F V    +  + R   K +       
Sbjct: 752 QIELRILAHIADIPQLKEAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAINF----- 806

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G++    A+ +                                    
Sbjct: 807 ---------GIIYGISAFGLANQLSI------------------------------PRDE 827

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                K + ++   + +  +      ++                          +  +  
Sbjct: 828 AGTYIKRYFERFPGIRDYMDSTKAFAKE--------------------------HGHVET 861

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             GR + Y D+ +  +   +      R            +Q  + DI+   M+    A  
Sbjct: 862 LFGRRVHYPDIRSPNA---SVRAFNERAAINAP------IQGTAADIIRRAMIRMEPALA 912

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
                  ++L VHDE++ E  D        ++  +M     P     +P++ +   +  +
Sbjct: 913 DAGLSARMLLQVHDELIFEVEDDQIDATLPVVRRVMEEAALPVVQLSVPIEVDAKAAANW 972


>gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
 gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Alteromonadales bacterium TW-7]
          Length = 911

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/703 (15%), Positives = 202/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F             HD            + 
Sbjct: 335 AFDTETTSLDYM----------QAQLVGMSFSVKAGEAAYLPVAHDYPDAPEQLSLEFVM 384

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           Q L   L + +   V  N  ++++VL      ++   +   T++ +              
Sbjct: 385 QKLGPILADANKAKVGQNLKYDKSVLANA-GYELNGIK-FDTMLESYVFNSVGTRHDMDS 442

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    ++                +    ++        Y   D  +T  + +
Sbjct: 443 LALKYLGHKNISFED----------IAGKGKKQLTFNQIELDKAAPYAAEDADITLRLHE 492

Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L  +   I   G  +D ++    +Q +     +L++E 
Sbjct: 493 VLWPKIEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSSMLGAHSQRLGERLIELEKEA 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF +  L +   T     +T + VL       P    +  
Sbjct: 553 FEIAG-EPFNLSSPKQLQVLLFEKLELPIIKKTPKGAPSTAEEVLQELAHDYPLPKVIIE 611

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+      + L   +N   +   T      + TGR S      QN+P  S     
Sbjct: 612 HR-GLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRR 670

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA++G K+V AD + IE R++A ++ ++  
Sbjct: 671 -------------------------IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGL 705

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G D++  T A  F V    VT D R   K +                    G++
Sbjct: 706 LNAFANGLDVHSATAAEVFGVDLDDVTTDMRRKAKAVNF--------------GLIYGMS 751

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + ++   V 
Sbjct: 752 ------------------------------AFGLARQLDVPRHEAQHYIDKYFERFPGVL 781

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E      +   +                          N  +    GR L   ++     
Sbjct: 782 EYMETTREKAAE--------------------------NGYVETIFGRRLHLPEINARNG 815

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTVHDE 631
                 +   R            +Q  + DI+ + M++  +  Y        +++ VHDE
Sbjct: 816 ARR---KGAERAAINAP------MQGTAADIIKKAMLSVNQWVYEQAPNTVKLLMQVHDE 866

Query: 632 IVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E      E     +  LM+   S    +PL  E  E + +
Sbjct: 867 LVFEIKTDCAEAYTKQICELMSQAAS--LDVPLIVEADEGENW 907


>gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
 gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium
           NOR51-B]
          Length = 911

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 197/701 (28%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++ F+              HD            + 
Sbjct: 336 AFDTETTSLNYM----------QARLVGFSMAIRPGTAAYVPLGHDYPGAPDQLDFEQVL 385

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LEN D+  +  N  ++  +L     + +       T++ +        L +VG 
Sbjct: 386 AKLKPILENADILKLGQNLKYDSNILCNH-GITLRGIT-EDTMLESYV------LDSVGT 437

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S  +   K L     K +       +    ++ A      Y   D  VT  + + 
Sbjct: 438 RHDMDSLAL---KYLGRGTTKFQDIAGKGAKQLTFNQIALEQAAPYAAEDADVTLRLHEV 494

Query: 175 LEPLSSKEQELWY-----------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P       L             +   I   G  +        +  +      L+   +
Sbjct: 495 LSPKLKAVPRLHQLYAELEVPLVAVLSRIERNGAYISRQSLADHSHELAGRLESLEARAQ 554

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L   LF + GL +   T     +T + VL    +  P    +   
Sbjct: 555 ELAGQA-FNLGSPKQLGEILFDKLGLPVIKKTPKGAPSTAEEVLLELAEDYPLPSVLMEY 613

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L E ++ D     T      + TGR S      QN+P  +      
Sbjct: 614 R-SLSKLKSTYTDRLPEVIDPDTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRR- 671

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A EG++++ AD + IE R++A ++ +   L
Sbjct: 672 ------------------------IRQAFVAPEGRRILAADYSQIELRIMAHLSRDAGLL 707

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T A  F V    VT DQR   K +                    G++ 
Sbjct: 708 RAFSEGLDVHSATAAEVFGVELNDVTVDQRRKAKAINF--------------GLIYGMS- 752

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        +   + +  ++  V++
Sbjct: 753 -----------------------------AFGLARQLHIGRGEAQEYIERYFSRYPGVAD 783

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                     +                             +    GR L   ++      
Sbjct: 784 YMARTRAEAHE--------------------------RGYVETHFGRRLQLPEINAKN-- 815

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633
                    R            +Q  + DI+ + M+              +++ VHDE+V
Sbjct: 816 -KQRQLAAERTAINAP------MQGTAADIIKKAMIAVDAWLQDSSLDALLIMQVHDELV 868

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  +T     S  L  LM      A  +PL  E      +
Sbjct: 869 FEVAETAVAQLSEALPSLMADVA--ALEVPLLVEAGVGANW 907


>gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200]
          Length = 897

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/702 (15%), Positives = 212/702 (30%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S            A +  ++  +F   +         H             + 
Sbjct: 323 AFDTETDSLN----------AYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK    ++    VAHN  F+  VL     ++I   +   T+++A              
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +      K   G E IA             + +   +    +  +Y   D  +T  +F  
Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
            + L  +++ L+ L   +              G  +D       +  ++    +L+ +  
Sbjct: 481 FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +     +L+  LF + GL     T     +T + VL    +    A  +   
Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++++GR+  +    G + TGR S      QN+P  S    + 
Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA +G  +V AD + IE R++A ++ ++  L
Sbjct: 657 ------------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLL 692

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           K F    D++  T A    ++  +V+ +QR   K +                    G++ 
Sbjct: 693 KVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  ++                                    +     +  ++  V E
Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q                          N  +    GR L   ++ +    
Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632
                    R            +Q  + DI+ + M+N          +   +V+ VHDE+
Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853

Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E      E   + +  +M +       +PL+      K +
Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
 gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107]
          Length = 937

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 94/715 (13%), Positives = 194/715 (27%), Gaps = 178/715 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + +D ET    ++             ++  +   +          H              
Sbjct: 352 VAVDTETTGFDEMVV----------DLVGISLCVEPGRACYIPLTHKSGSSDDLFGSDDL 401

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                       +LK  LE+  +  +  N  ++  +        I +     T++++ + 
Sbjct: 402 ADGQMPLQDALDLLKPVLEDNSILKIGQNMKYDAKIFAR---RGIDVAPIDDTMLMSYAM 458

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E              L       +             R        Y
Sbjct: 459 HAGQHGHGMDTLSERY------------LNHTPIPIKPLLGTGKSAITFDRVPIDDAVAY 506

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  +++  +P   +          E+ L  +   +   G  VD      ++  
Sbjct: 507 AAEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDTLSRMSNA 566

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +   L+ E+  L      +    ++L   LF + G+      +T    T   +L   
Sbjct: 567 FAQKMAGLEAEIHELAGQ-NFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGADILEDL 625

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFP 325
                    V + R   S+      + L + +N   GR+  +    GA+ TGR +     
Sbjct: 626 ATEHALPGLVLDWRQ-LSKLKSTYTDALQDHINAETGRVHTSYVQTGAN-TGRLASTDPN 683

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +  EG  L+  D + IE
Sbjct: 684 LQNIPIRSEEGRR-------------------------IREAFVPEEGNVLLALDYSQIE 718

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +AG     +AF  G+D++  T +  FNV   ++T D R   K +          
Sbjct: 719 LRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAIN--------- 769

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 770 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 794

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    +E     ++                          +  +    G
Sbjct: 795 FIDRYFERFPGIRRYMDETVAFAKE--------------------------HGHVQTLFG 828

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621
           R +   ++    S          R            +Q  + D++   M+          
Sbjct: 829 RKIHTPEI----SAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPAAIAHLP 878

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
             ++L VHDE++ E P+   E        +M +    A    + L  +    + +
Sbjct: 879 ARMLLQVHDELLFEVPEAAVEDTIETASQVMETAADPAVHLDVKLVVDAGRGQNW 933


>gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU]
 gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
 gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Acinetobacter baumannii ACICU]
 gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2]
 gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715]
 gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059]
          Length = 923

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRE 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  +++ +           
Sbjct: 399 QVLAQIKPILENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P  
Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + L+E  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  + K +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919


>gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
 gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022]
          Length = 897

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/702 (15%), Positives = 212/702 (30%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S              +  ++  +F   +         H             + 
Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK    ++    VAHN  F+  VL     ++I   +   T+++A              
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +      K   G E IA             + +   +    +  +Y   D  +T  +F  
Sbjct: 431 S------KEHLGIEPIAY----TVIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
            + L  +++ L+ L   +              G  +D       +  ++    +L+ +  
Sbjct: 481 FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +     +L+  LF + GL     T     +T + VL    +    A  +   
Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++++GR+  +    G + TGR S      QN+P  S    + 
Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA +G  +V AD + IE R++A ++ ++  L
Sbjct: 657 ------------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLL 692

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF    D++  T A    ++  +V+ +QR   K +                    G++ 
Sbjct: 693 KAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  ++                                    +     +  ++  V E
Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q                          N  +    GR L   ++ +    
Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632
                    R            +Q  + DI+ + M+N          +   +V+ VHDE+
Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853

Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E      E   + +  +M +       +PL+      K +
Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 923

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQLNRE 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  +++ +           
Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P  
Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + L+E  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  + K +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919


>gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
 gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606]
          Length = 923

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQLNRE 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  +++ +           
Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P  
Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + L+E  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  + K +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919


>gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217]
 gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217]
          Length = 936

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 102/716 (14%), Positives = 202/716 (28%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            + +D ET S  ++             ++  +              H             
Sbjct: 350 YVAVDTETTSLNEM----------QADLVGISLAIAPGRACYIPLTHKDGAADDLFGSDK 399

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                         LK  LE+  +  +  N  ++  +  A     I +     T++++ +
Sbjct: 400 MAEGQMPVADALAALKPVLEDHAILKIGQNMKYDAKIFAA---RGITVEPIDDTMLMSYA 456

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    + A+ E            K L+                    R       +
Sbjct: 457 LHAGLHGHGMDALSERY--LMHTPIPIKSLL----------GSGKTAVTFDRVPVDEAVK 504

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  ++   +P   +          E+ L  +   +   G  VD A    ++ 
Sbjct: 505 YAAEDADITLRLWLTFKPQLHRARVTTVYETLERPLVPVLAQMERYGVKVDRATLRAMSG 564

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L      +    ++L   LF E GL   +  +T    T   VL  
Sbjct: 565 KFAQKMAALESEIHELAG-RSFNVGSPKQLGEILFDEMGLSGGEKGKTGAYATGADVLED 623

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVF 324
                    +V + R   S+      + L + ++ D GR+  +    GA+ TGR +    
Sbjct: 624 LATEHELPARVLDWRQ-LSKLKSTYTDALQDHIDPDTGRVHTSYVQAGAN-TGRLASTDP 681

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  S                              +R   +A+ G +LV  D + I
Sbjct: 682 NLQNIPVRSEEGRR-------------------------IREAFVAASGHRLVSLDYSQI 716

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA +A  +   +AF  G D++  T +  FNV   Q+T + R   K +         
Sbjct: 717 ELRILAHVAEIETLKQAFREGHDIHAMTASEMFNVPLDQMTPEIRRQAKAIN-------- 768

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G++                                  A       +  +
Sbjct: 769 ------FGVIYGIS------------------------------GFGLARNLRIPRSEAQ 792

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                + ++   + +  +      ++                          +  +    
Sbjct: 793 GFIDRYFERFPGIKDYMDATVAFAKE--------------------------HGYVQTLF 826

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA 620
           GR +   ++    S          R            +Q  + DI+   M+         
Sbjct: 827 GRKIHTPEI----SAKGPRAGFARRAAINAP------IQGSAADIIRRAMIRMPDAIEGL 876

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673
              ++L VHDE++ E  +        +   +M    S A    +PL  +  +   +
Sbjct: 877 PCKMLLQVHDELIFEVAEEATDRLIEIARDVMQGAASPAVHLDVPLVVDAGQGVNW 932


>gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900]
          Length = 923

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRE 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  +++ +           
Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P  
Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + L+E  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  + K +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919


>gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7]
          Length = 921

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 97/698 (13%), Positives = 193/698 (27%), Gaps = 160/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60
             D ET     L             ++  +F   ++         +      + +    A
Sbjct: 351 AFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFSPA 400

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L+N     +  N  F+  VL+   N+ +       T++            +  + E    
Sbjct: 401 LQNPKSLKIGQNIKFDILVLRKY-NVKVA-GPLFDTMIAHYLLNPELRHGMDYLAETY-- 456

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              +    +ELI                            EY   D  VT ++     P 
Sbjct: 457 LKYQTVHIEELIG---------PKGKNQLSMRNVPVEQIAEYAAEDADVTLKLKNYFAPE 507

Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L Y+   +   G  +D       +  +     KL+QE+  L   
Sbjct: 508 LKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELAGT 567

Query: 229 LVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +    +++   LF    L  +   T+    +T + VL   +   P   ++   R   
Sbjct: 568 -EFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLEYR-GL 625

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     ++ L E +N       T      + TGR S      QN+P       E     
Sbjct: 626 KKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGRE----- 680

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   I          AD + IE R++A ++G+   ++AF
Sbjct: 681 --------------------IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAF 720

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           ++G D++  T A+ + +   +VT D R   K                      G+++   
Sbjct: 721 QSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANF--------------GIIYGISVFGL 766

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A                                     +  + +   +   + R+ E   
Sbjct: 767 AER------------------------------LGIPRSESKELIDGYFSTYPRIKEYME 796

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           E  +  ++                             +     R     D+ ++ + +  
Sbjct: 797 ESIKVAKE--------------------------KGYVETIFKRKRFLPDINSHNAVVRG 830

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q  + DI+   M+   +          ++L VHDE+    
Sbjct: 831 Y---AERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNV 881

Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              +      +    M +       +PL A+  E + +
Sbjct: 882 YKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917


>gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis]
          Length = 931

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 104/708 (14%), Positives = 210/708 (29%), Gaps = 167/708 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + +D ET +   +             ++  +F             H+           
Sbjct: 355 DLVALDTETSALDAMR----------AQIVGLSFSVQPGEAAYIPLRHEGPDAPVQLPLE 404

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109
            +   LK  LE+     +  +  ++R V      +++  +    T++ +    +  P  L
Sbjct: 405 QVLARLKPWLEDARHAKLGQHIKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHNL 462

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++ E                      E          P  + +      Y   D   T 
Sbjct: 463 ASLAERH------------TGRTGLNYEDLCGKGVHQIPFAQVSVDKAATYACEDSDQTL 510

Query: 170 EIFKRLEPLS---SKEQELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLD 219
           E+ + L PL     + + ++ L+         +   G  +D AL    +  +     +L+
Sbjct: 511 EVHQTLWPLLQANERLRAIYELEMHSSEALFRMERNGVLIDAALLAQQSHALGQRILRLE 570

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQ 275
            E   +      +    ++L    F + G+ +   T     +T + VL       P   +
Sbjct: 571 TEAYEIAGQP-FNLNSPKQLGEIFFDKLGMPVVRKTTTGARSTNEEVLEKLAADYPLPAR 629

Query: 276 VFNNRMRASRSAVLKLNTL-VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   S+      + L + A+   GR+        A  TGR S      QN+P  + 
Sbjct: 630 LLEHR-SLSKLKSTYTDKLGLLALPRTGRVHTHYAQAVA-VTGRLSSSDPNLQNIPVRTP 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   +A  G+ +  AD + IE R++A ++G
Sbjct: 688 EGRR-------------------------IREAFVAPPGRVIASADYSQIELRIMAHISG 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L AF  G D++  T A  F V  ++V+ +QR   KV+                   
Sbjct: 723 DPSLLHAFHHGLDVHRATAAEVFGVPVSEVSSEQRRYAKVIN--------------FGLI 768

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  A        A +   + + +++
Sbjct: 769 YGMSSFGL------------------------------AKNLGLDRQAAKNYIQRYFERY 798

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +   E     +                              +    GR L+  ++ 
Sbjct: 799 PGVRQYMEETKARAKS--------------------------LGYVETVFGRRLMLPEIN 832

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTV 628
           +          +               +Q  + D++ + M+         K    +++ V
Sbjct: 833 SPNGPRRAAAERA---------AINAPMQGTAADLIKKAMVAVQARLDAEKPEILMIMQV 883

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           HDE+V E P+       + +  LM      A  +PL AE      + K
Sbjct: 884 HDELVFELPENAVDWLRAEVPRLMAGVA--ALRVPLLAEVGVGGNWDK 929


>gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
 gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans']
          Length = 927

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 202/705 (28%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET     LT            +I   F             HD            + 
Sbjct: 352 AFDTETDGLDTLT----------ANLIGLCFAVKPGEAAYLPVGHDYLDAPDQLDRATVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110
             LK  +E+  +  +  N  F+R VLK     DI +      T++ +           + 
Sbjct: 402 AALKPVMEDPTIGKIGQNLKFDRGVLKRY---DIELAGIAFDTMLESYVLDSVAGRHDMD 458

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           ++ E              L       E            ++ A      Y   D  VT  
Sbjct: 459 SLAERF------------LQHTTVSFEEIAGKGRNQLTFNQIAMEQAASYAAEDADVTLR 506

Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + ++L P   +           E  L  +   I   G  +D ++    +  +     +L+
Sbjct: 507 LHQKLWPRIEQAPELRRVFEEIEMPLVPVLSRIERTGVLIDESILAAHSVELAKRLEELE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
            E   L      +    ++L+  L+ +  L +   T     +T + VL+      P    
Sbjct: 567 GEAHQL-AEEPFNLSSTKQLQEILYDKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKL 625

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++      + L + +N   +   T      + TGR S      QN+P  +  
Sbjct: 626 ILEYR-GLAKLKSTYTDKLPQMINPLSKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDE 684

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA     +V AD + IE R++A +A +
Sbjct: 685 GRR-------------------------IRQAFIAPPDALIVAADYSQIELRIMAHLARD 719

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  G+D++  T A  F ++  +VT+DQR   K +                    
Sbjct: 720 PGLLNAFAAGKDIHRATAAEVFGMSLEKVTQDQRRSAKAINF--------------GLIY 765

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +     +  ++    + +++ 
Sbjct: 766 GMS------------------------------AFGLARQLSVPRSEAQKYMNLYFERYP 795

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V E      +                             +   +    GR L   D+ +
Sbjct: 796 GVLEYMERTRRQA--------------------------SDRGYVETLDGRRLYLLDIHS 829

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
                    + + R            +Q  S DI+   M+              +++ VH
Sbjct: 830 RNGMRK---KGVERAAINAP------MQGTSADIIKRAMIAIDGWLQQEAPPVRMIMQVH 880

Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E       +A   +  LM         +PL+ +    + +
Sbjct: 881 DELVFEVQRDAVESAKARIKALMEGCFK--LDVPLQVDVGVGENW 923


>gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1]
 gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45
 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1]
          Length = 993

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 215/613 (35%), Positives = 325/613 (53%), Gaps = 26/613 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP  LK  L++
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDD 63

Query: 64  TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SS 120
           +++  V HN   F+  +LK   N+D+P+ R   TLV A ++GLP AL  + +   +    
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 121 QKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K +EGK LI+  CK         R     H E W+ F +Y   D+   REI++ L   +
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E   W LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   +
Sbjct: 184 MNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T QR ++    + P   ++ + R+++  ++  K   L+++
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRIND-PDIPPALRELLSVRLQSCTTSTSKYKALLKS 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           +++DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D
Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDD 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YV 410
            +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF   ++      Y 
Sbjct: 363 IMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YAR+FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N 
Sbjct: 423 LAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
            P    +A  + +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q
Sbjct: 483 PPGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQ 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---SYLNT--TTR 585
            I++       ++     + +++DK+ L + LPSGRSL Y          +Y+ T   +R
Sbjct: 542 AIQSPGIAFKCRK-----LSVRRDKSWLRICLPSGRSLCYPSARIENGQITYMGTNPYSR 596

Query: 586 QLTREYTYGGKLT 598
           +  R  TYGGK  
Sbjct: 597 KWERLKTYGGKSC 609



 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 54/78 (69%)

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI QA +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  W
Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974

Query: 658 AKGLPLKAEGYESKRYRK 675
           A  LPL A G+E+ RYRK
Sbjct: 975 AWDLPLSANGFETYRYRK 992


>gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1]
 gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS]
 gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257]
 gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 897

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/702 (15%), Positives = 211/702 (30%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S              +  ++  +F   +         H             + 
Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK    ++    VAHN  F+  VL     ++I   +   T+++A              
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +      K   G E IA             + +   +    +  +Y   D  +T  +F  
Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
            + L  +++ L+ L   +              G  +D       +  ++    +L+ +  
Sbjct: 481 FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +     +L+  LF + GL     T     +T + VL    +    A  +   
Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++++GR+  +    G + TGR S      QN+P  S    + 
Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA +G  +V AD + IE R++A ++ ++  L
Sbjct: 657 ------------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLL 692

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           K F    D++  T A    ++  +V+ +QR   K +                    G++ 
Sbjct: 693 KVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  ++                                    +     +  ++  V E
Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q                          N  +    GR L   ++ +    
Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632
                    R            +Q  + DI+ + M+N          +   +V+ VHDE+
Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853

Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E      E   + +  +M +       +PL+      K +
Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058]
 gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
 gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii AYE]
 gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294]
 gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150]
 gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113]
          Length = 923

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRE 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  +++ +           
Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P  
Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + L+E  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  + K +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919


>gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
 gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B]
          Length = 921

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 96/698 (13%), Positives = 193/698 (27%), Gaps = 160/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60
             D ET     L             ++  +F   ++         +      + +    A
Sbjct: 351 AFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFSPA 400

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L+N     +  N  F+  VL+   N+ +       T++            +  + E    
Sbjct: 401 LQNPKSLKIGQNIKFDILVLRKY-NVKVA-GPLFDTMIAHYLLNPELRHGMDYLAETY-- 456

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              +    +ELI                            EY   D  +T ++     P 
Sbjct: 457 LKYQTVHIEELIG---------PKGKNQLSMRNVPVEQIAEYAAEDADITLKLKNYFAPE 507

Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L Y+   +   G  +D       +  +     KL+QE+  L   
Sbjct: 508 LKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVALRQSSGELTASMNKLEQEVYELAGT 567

Query: 229 LVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +    +++   LF    L  +   T+    +T + VL   +   P   ++   R   
Sbjct: 568 -EFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLEYR-GL 625

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     ++ L E +N       T      + TGR S      QN+P       E     
Sbjct: 626 KKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGRE----- 680

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   I          AD + IE R++A ++G+   ++AF
Sbjct: 681 --------------------IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAF 720

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           ++G D++  T A+ + +   +VT D R   K                      G+++   
Sbjct: 721 QSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANF--------------GIIYGISVFGL 766

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A                                     +  + +   +   + R+ E   
Sbjct: 767 AER------------------------------LGIPRSESKELIDGYFSTYPRIKEYME 796

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           E  +  ++                             +     R     D+ ++ + +  
Sbjct: 797 ESIKVAKE--------------------------KGYVETIFKRKRFLPDINSHNAVVRG 830

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q  + DI+   M+   +          ++L VHDE+    
Sbjct: 831 Y---AERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNV 881

Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              +      +    M +       +PL A+  E + +
Sbjct: 882 YKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917


>gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198]
 gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033]
 gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 897

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/702 (15%), Positives = 211/702 (30%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S              +  ++  +F   +         H             + 
Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK    ++    VAHN  F+  VL     ++I   +   T+++A              
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +      K   G E IA             + +   +    +  +Y   D  +T  +F  
Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
            + L  +++ L+ L   +              G  +D       +  ++    +L+ +  
Sbjct: 481 FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +     +L+  LF + GL     T     +T + VL    +    A  +   
Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++++GR+  +    G + TGR S      QN+P  S    + 
Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA +G  +V AD + IE R++A ++ ++  L
Sbjct: 657 ------------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLL 692

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           K F    D++  T A    ++  +V+ +QR   K +                    G++ 
Sbjct: 693 KVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  ++                                    +     +  ++  V E
Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q                          N  +    GR L   ++ +    
Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632
                    R            +Q  + DI+ + M+N          +   +V+ VHDE+
Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853

Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E      E   + +  +M +       +PL+      K +
Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
 gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA]
 gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A]
          Length = 971

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 95/701 (13%), Positives = 208/701 (29%), Gaps = 160/701 (22%)

Query: 2   ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56
             +  +D ET     +T            ++  +F + ++         D      +   
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRAEAQKIVNE 447

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114
            + A E   V  V  N  ++  VL      ++       T+V            +  + E
Sbjct: 448 FRPAFEKEGVLKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  +    +ELI                K     +     +Y   D  VT ++   
Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNI 554

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           LE               E  L  +   +   G  VD       ++       ++++E+  
Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           L      +    +++   LF +  +      T+T    T + VL S +       ++  +
Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    +     ++ L   +N +     T      + TGR S      QN+P  +   +E 
Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  +G +   AD + IE R++A ++G+   +
Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMI 767

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G+D++  T A+ + ++  +VT++QR+  K     +                G+++
Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGII--------------YGISV 813

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +                                  + +   + + + ++ E
Sbjct: 814 FGLAERMNVD------------------------------RKEAKELIDGYFETYPQIKE 843

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             ++                                    +    GR     D+ +  S 
Sbjct: 844 YMDKSIDLAR--------------------------GQGYIETIFGRKRYLPDINSRNSV 877

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
           +        R            +Q  + DI+   M+   +          ++L VHDE+ 
Sbjct: 878 VRGY---AERNAINAP------IQGGAADIIKVAMVRIYQRFQSESIKSKMILQVHDELN 928

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++     +    M +   +   +PL+A+      +
Sbjct: 929 FSVLPEEKEKVQKIVIEEMENA--YRMQVPLRADCGWGSNW 967


>gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 938

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 204/703 (29%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F   +         HD            + 
Sbjct: 362 AFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRDWVI 411

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 412 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 469

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++   +   +Y   D  VT  + +
Sbjct: 470 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQ 519

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+++ 
Sbjct: 520 RISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKA 579

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 580 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 638

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N +     T      + TGR S      QN+P  +     
Sbjct: 639 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 697

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 698 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 732

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 733 LDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GLIYGMS 778

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 779 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 808

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      +                             +    GR L   ++ +  +
Sbjct: 809 QYMEDTRSRAAE--------------------------LGYVETIFGRRLHLPEITSRNA 842

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 843 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDE 893

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S +  LM S    A  +PL AE      +
Sbjct: 894 LVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934


>gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
 gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624]
          Length = 923

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 196/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRE 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  +++ +           
Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEG 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P A
Sbjct: 565 LENQAMEI-ADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLA 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + LVE  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTRQESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  + + +
Sbjct: 877 DELVFEADQNIAEELSKQIASVMESVVE--ISVPLVVEVGQGQNW 919


>gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603]
 gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603]
          Length = 938

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 204/703 (29%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F   +         HD            + 
Sbjct: 362 AFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDREWVI 411

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 412 TQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 469

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++   +   +Y   D  VT  + +
Sbjct: 470 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQ 519

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+++ 
Sbjct: 520 RISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKA 579

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 580 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 638

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N +     T      + TGR S      QN+P  +     
Sbjct: 639 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 697

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 698 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 732

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 733 LDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GLIYGMS 778

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 779 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 808

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      +                             +    GR L   ++ +  +
Sbjct: 809 QYMEDTRSRAAE--------------------------LGYVETIFGRRLHLPEITSRNA 842

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 843 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDE 893

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S +  LM S    A  +PL AE      +
Sbjct: 894 LVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934


>gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 933

 Score =  416 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 104/706 (14%), Positives = 208/706 (29%), Gaps = 170/706 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
            +D ET S           Y E   ++  +F  +          HD              
Sbjct: 357 AVDTETTSLN---------YME-AKLVGLSFAVEAGKAAYLPLAHDYLDAPQQLNQAEAL 406

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LEN ++  V  N  ++ ++L     + +       T++ +           +  
Sbjct: 407 AKLKPLLENPEIKKVGQNLKYDMSILAN-VGIKLQGIA-FDTMLESYVFNSVASKHNMDD 464

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G + I+     E       +    ++ +  +   Y   D  +T  +
Sbjct: 465 LALKY--------LGHKNISF----EEIAGKGAKQLTFNQISLEVAAPYAAEDADITLRL 512

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   +  +G  +D  L    ++ +     +L+Q
Sbjct: 513 HQHLWPRLQKEPELASIFTEIELPLVQVLSDMERQGVLIDSMLLGQQSEELARTIDELEQ 572

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+   F + G  +   T     +T + VL       P    +
Sbjct: 573 KAYEIAG-ESFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPLPKII 631

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
             +R   ++      + L   +N+  GR+  +     A+ TGR S      QN+P  +  
Sbjct: 632 LQHR-SLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEE 689

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA EG+K++ AD + IE R++A ++ +
Sbjct: 690 GRR-------------------------IRHAFIAREGRKVLAADYSQIELRIMAHLSQD 724

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F+V   +VT +QR   K +                    
Sbjct: 725 KGLLTAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVN--------------FGLIY 770

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    A  +                                     ++    + +++ 
Sbjct: 771 GMSAFGLARQLDI------------------------------PRGEAQKYIDTYFKRYP 800

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V     E                                +   +    GR L    + +
Sbjct: 801 GVLNYMEETRAIA--------------------------ADLGYVSTLYGRRLYLPAIKD 834

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-------IVLTV 628
             +          R            +Q  + DI+ + M+N      +       +++ V
Sbjct: 835 RNAMRRQA---AERAAINAP------MQGTAADIIKKAMINVADWIANETDGEITLIMQV 885

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E            +  LM         + L AE      +
Sbjct: 886 HDELVFEVDSDKAEALQEKVCQLMAEAAD--LDVELLAEAGLGDNW 929


>gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
 gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10]
          Length = 937

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 94/715 (13%), Positives = 194/715 (27%), Gaps = 178/715 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + +D ET    ++             ++  +   +          H              
Sbjct: 352 VAVDTETTGFDEMVV----------DLVGISLCVEPGSACYIPLTHKSGSSDDLFGSDDL 401

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                       +LK  LE+  +  +  N  ++  +        I +     T++++ + 
Sbjct: 402 ADGQMPLQDALNLLKPVLEDNSILKIGQNMKYDAKIFAR---RGIDVAPIDDTMLMSYAM 458

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E              L       +             R        Y
Sbjct: 459 HAGQHGHGMDTLSERY------------LNHTPIPIKPLLGTGKSAITFDRVPIDDAVAY 506

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  +++  +P   +          E+ L  +   +   G  VD      ++  
Sbjct: 507 AAEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDTLSRMSNA 566

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
              +   L+ E+  L      +    ++L   LF + G+      +T    T   +L   
Sbjct: 567 FAQKMAGLEAEIHELAGQ-NFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGADILEDL 625

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFP 325
                    V + R   S+      + L + +N   GR+  +    GA+ TGR +     
Sbjct: 626 ATEHALPGLVLDWRQ-LSKLKSTYTDALQDHINAETGRVHTSYVQTGAN-TGRLASTDPN 683

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +  EG  L+  D + IE
Sbjct: 684 LQNIPIRSEEGRR-------------------------IREAFVPEEGNVLLALDYSQIE 718

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +AG     +AF  G+D++  T +  FNV   ++T D R   K +          
Sbjct: 719 LRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAIN--------- 769

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 770 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 794

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    +E     ++                          +  +    G
Sbjct: 795 FIDRYFERFPGIRRYMDETVAFAKE--------------------------HGHVQTLFG 828

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621
           R +   ++    S          R            +Q  + D++   M+          
Sbjct: 829 RKIHTPEI----SAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPAAIAHLP 878

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
             ++L VHDE++ E P+   E        +M +    A    + L  +    + +
Sbjct: 879 ARMLLQVHDELLFEVPEAAVEDTIETARQVMETAADPAVHLDVKLVVDAGRGQNW 933


>gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I
 gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum]
          Length = 1016

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/725 (14%), Positives = 210/725 (28%), Gaps = 185/725 (25%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---------ELWDCVHDP--- 51
            +  D ET S            A    ++ F+    D+                VH     
Sbjct: 418  VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVG 467

Query: 52   ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                                LK  LE+  V  VA N  ++  +LK      I    +  T
Sbjct: 468  DLLGGGLADNQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDT 524

Query: 97   LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            ++++           +  + E           G   I      +        N       
Sbjct: 525  MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGKANVTFDLVD 572

Query: 154  WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203
                  Y   D  VT  ++  L+P              E+ L  +   +  RG  VD  +
Sbjct: 573  IDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 632

Query: 204  AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259
               L+  +     +L+ E+  L      +    ++L   LF + GL     T+    +T 
Sbjct: 633  LSRLSGELAQGAARLEDEIYVLAG-ERFNIGSPKQLGDILFGKMGLSGGSKTKTGQWSTS 691

Query: 260  QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             +VL        +  +   +  + ++      + L   ++ + +   T   L ++ TGR 
Sbjct: 692  AQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRL 751

Query: 320  SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
            S      QN+P  +    +                         +R+  I++ G KL+ A
Sbjct: 752  SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 786

Query: 380  DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
            D + IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +   +
Sbjct: 787  DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 846

Query: 440  GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                            G++    A+ +                                 
Sbjct: 847  I--------------YGISAFGLANQLSIE------------------------------ 862

Query: 500  GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
             +      K + ++   + +                                        
Sbjct: 863  RSEAGDYIKKYFERFPGIRDYMESRKAMARD--------------------------KGY 896

Query: 560  LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            +    GR + Y ++ ++     +      R            +Q  + D++   M+    
Sbjct: 897  VETIFGRRINYPEIRSSNP---SVRAFNERAAINAP------IQGSAADVIRRAMIKIEP 947

Query: 620  A--------GYDIVLTVHDEIVCETPD-TDEFNASMLYHLMTSN--PSWAKGLPLKAEGY 668
            A           ++L VHDE++ E  D   E    ++  +M +   P+    +PL+ +  
Sbjct: 948  ALVEVGLADRVRMLLQVHDELIFEVEDQDVEKAMPVIVSVMENATMPALEMRVPLRVDAR 1007

Query: 669  ESKRY 673
             +  +
Sbjct: 1008 AATNW 1012


>gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4]
 gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4]
          Length = 930

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 101/703 (14%), Positives = 197/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  D+         HD            + 
Sbjct: 354 AFDTETDSLDYMVTN----------LVGVSFATDEGVAAYVPLAHDYLDAPQQLDRDWVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL     +++   +   T++ +              
Sbjct: 404 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 461

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++        Y   D  VT  +  
Sbjct: 462 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLNEAAPYAAEDADVTLRLHN 511

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     ++             L  +   I   G  +D       +  +     +L+Q+ 
Sbjct: 512 RLAANIEQDKKLKAVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKA 571

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL         T +T + VL       P    +  
Sbjct: 572 YEI-AEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLILE 630

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 631 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 689

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 690 -------------------------IRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQAL 724

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V+   V+ +QR   K +                    G++
Sbjct: 725 LDAFRDGKDIHTATAAEIMGVSIEDVSSEQRRRAKAVN--------------FGLIYGMS 770

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 771 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 800

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   A  +                             +    GR L   ++ +   
Sbjct: 801 QYMEDTRSAAAE--------------------------QGYVETIFGRRLHLPEIQSRNG 834

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG---YDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+       + G     +++ VHDE
Sbjct: 835 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVGRWIEEHGDGRVKLLMQVHDE 885

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S +  LM S       +PL A+      +
Sbjct: 886 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVADAGHGDNW 926


>gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
 gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01]
          Length = 889

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 212/702 (30%), Gaps = 163/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET     +             ++  +F ++          HD              
Sbjct: 314 ALDTETTGLDPM----------QASLVGMSFSYEADRAFYAPLTHDYLGAPDQVGVEKAL 363

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++L   L N ++  +  N  ++  VL      D+       T+V +              
Sbjct: 364 EILGPVLSNPEIKKIGQNIKYDWIVLARH-GADLQGVA-FDTMVASYLLNPSH------R 415

Query: 115 ALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +  L    ME     +I+     E       +    ++        Y   D  VT +I+ 
Sbjct: 416 SHGLDQIAMELLEHRMISY----EEVCGKGAKAITFNQVPLEKAVPYACEDADVTFQIYG 471

Query: 174 RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+P   K Q           L  +   +   G  VD      L++         ++E+ 
Sbjct: 472 LLQPKLEKNQLLELFKTVEMPLVRVLVKMEMEGITVDSDQLQALSKEFQGGMESAEKEIY 531

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFN 278
            L      +    ++L   LF + GL ++  T+     +T  +VL++          +  
Sbjct: 532 QLAG-EEFNIASPQQLGHILFEKLGLPVQKKTKKKTGYSTDVKVLTTLASQHELPALILR 590

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            R   ++     ++ L   ++ + GR+  +      + TGR S      QN+P  +   +
Sbjct: 591 YR-SVAKLKSTYVDALQSLIHPETGRVHTSFNQNV-TATGRLSSSNPNLQNIPIRTPEGK 648

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   I  +G ++  AD + IE R+LA ++ +++
Sbjct: 649 R-------------------------IREAFIPRKGWEMFCADYSQIELRILAHLSQDEF 683

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++ F++GED++  T +  F + P  VT + R   K +                    G+
Sbjct: 684 LIELFKSGEDIHKRTASEVFELFPEFVTDEMRRQAKAIN--------------FGIIYGM 729

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                ++ +                                     +R    +   +  V
Sbjct: 730 GAFRLSNEI------------------------------GVSRKTAQRYIDNYFVTYKGV 759

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +   E      +T                           +     GR+    D+    
Sbjct: 760 KKFIEETIALAHET--------------------------GMTKTLLGRTRPLPDINAKN 793

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
                      R  T         +Q  + D++   M+    A         ++LTVHDE
Sbjct: 794 ---RVLMEAAERIATNTP------IQGTAADLIKVAMIKVQNALEEQNMQTKMLLTVHDE 844

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E+P  + F A +L   M     W   + LK      K +
Sbjct: 845 LVFESPPEEIFQAQVLAEQMMEGV-WDLDVALKVNIESGKNW 885


>gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii SDF]
 gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter baumannii]
          Length = 923

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/705 (15%), Positives = 194/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRE 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  +++ +           
Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P  
Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + L+E  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  +   +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGNNW 919


>gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116]
 gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116]
          Length = 930

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 101/703 (14%), Positives = 194/703 (27%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  D+         HD            + 
Sbjct: 354 AFDTETDSLDYMV----------ANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +VL     +++   +   T++ +              
Sbjct: 404 AQLKPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 461

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++        Y   D  VT  +  
Sbjct: 462 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLDEASPYAAEDADVTLRLHN 511

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     ++             L  +   I   G  +D       +  +     +L+Q+ 
Sbjct: 512 RLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLDELEQKA 571

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL         T +T + VL       P    +  
Sbjct: 572 YEI-AEQEFNMNSPKQLQALLFEKMGLPVINKTPSGTPSTNEEVLQELALDYPLPKLILE 630

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 631 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 689

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 690 -------------------------IRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQAL 724

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V+   V+ +QR   K +                    G++
Sbjct: 725 LDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVN--------------FGLIYGMS 770

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 771 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 800

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   A                                +    GR L   ++ +   
Sbjct: 801 QYMEDTRSAA--------------------------SEQGFVETIFGRRLHLPEIQSRNG 834

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 835 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 885

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S + +LM S       +PL AE      +
Sbjct: 886 LVFEVEESSLSEIESKVQNLMESAAE--LKVPLVAEAGHGDNW 926


>gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112]
 gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
 gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112]
 gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE]
          Length = 897

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 212/702 (30%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S              +  ++  +F   +         H             + 
Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK    ++    VAHN  F+  VL     ++I   +   T+++A              
Sbjct: 373 DKLKRLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +      K   G E IA             + +   +    +  +Y   D  +T  +F  
Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
            + L  +++ L+ L   +              G  +D A     +  ++    +L+ +  
Sbjct: 481 FKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSVSLETSIKELESKCY 540

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +     +L+  LF + GL     T     +T + VL    +    A  +   
Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++++GR+  +    G + TGR S      QN+P  S    + 
Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G  +V AD + IE R++A ++ ++  L
Sbjct: 657 ------------------------IREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLL 692

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF    D++  T A    ++  +V+ +QR   K +                    G++ 
Sbjct: 693 KAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  ++                                    +     +  ++  V E
Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q                          N  +    GR L   ++ +    
Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632
                    R            +Q  + DI+ + M+N          +   +V+ VHDE+
Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853

Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E      E   + +  +M +       +PL+      K +
Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1]
 gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1]
          Length = 968

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 105/713 (14%), Positives = 213/713 (29%), Gaps = 174/713 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------- 51
             D ET S   +             ++ F+              H               
Sbjct: 382 AFDTETTSLDPI----------QAKLVGFSLALQPEKAAYVPLEHVEGENDLLKGGRIVS 431

Query: 52  -----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-- 104
                    +LK  LE+  V  +  N  ++  V+K      I IH +  T++L+ +    
Sbjct: 432 QIETQKALTLLKPILEDQAVLKIGQNIKYDWLVMKQY---GIVIHCFDDTMLLSYALEAG 488

Query: 105 -LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            L   + A+ E           G + IA     +       +         +    Y   
Sbjct: 489 TLTHNMNALSERW--------LGHKPIAY----KDLTHNGKKITSFAEVDLKQATLYAAE 536

Query: 164 DVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           D  +T  +++ L+P              ++ L  +   + +RG  VD  +   L+  +  
Sbjct: 537 DADITLRLWQVLKPQLVAQGMTRIYERLDRPLIEVLARMEERGILVDRQILLRLSGELAQ 596

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL 269
               L++E+  L+     +    ++L   LF + GL     T+    +T  + L      
Sbjct: 597 AAFILEEEIYQLSG-EKFNLASPKQLGDILFGKMGLPGGAKTKGGQWSTSAQTLEELAAE 655

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                +   +  + ++      + L   +        T   L  + TGR S      QN+
Sbjct: 656 GHILPRKIIDWRQLAKLKSTYTDALPSYILPKTGRVHTNYSLAITSTGRLSSSEPNLQNI 715

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +    +                         +R+  +A +   L+ AD + IE R+L
Sbjct: 716 PVRTAEGRK-------------------------IRTAFVAPKRHVLLSADYSQIELRIL 750

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A      +AF  G+D++  T ++ F VA   +  D R   K +              
Sbjct: 751 AHIANITALKEAFSRGQDIHAITASQIFGVAIEGMPSDIRRRAKAINF------------ 798

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                 G++                                  A +         R  + 
Sbjct: 799 --GIIYGIS------------------------------AFGLANQLGLSRQEAGRYIQL 826

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           + ++   + +          Q                          N  +    GR + 
Sbjct: 827 YFERFPGIKDYIETTKTFARQ--------------------------NGYVETIFGRRIH 860

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYD 623
           Y ++    +          R            +Q  + DI+   M+         K    
Sbjct: 861 YPEIK---AASPQVRSFNERAAINAP------IQGSAADIIRRAMIQMEDALEKEKLSAK 911

Query: 624 IVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
           ++L VHDE+V E P+ + +   +++  +M +   P  +  +PL+ +   ++ +
Sbjct: 912 MLLQVHDELVFEVPEEESKKTMAVVKKVMENATMPVLSLSVPLEVKVMVAQNW 964


>gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB]
 gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB]
          Length = 928

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 104/707 (14%), Positives = 208/707 (29%), Gaps = 172/707 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET +   L+            ++  +F             HD            + 
Sbjct: 352 AFDLETDALDTLS----------ANIVGISFAVAPGEAAYLPVAHDYLDAPDQLDRAAVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110
             LK  LE+ +   V  N  ++R VLK     DI +       ++ +           + 
Sbjct: 402 AQLKPLLEDENAWKVGQNLKYDRGVLKNY---DIELAGIKFDAMLESYILNSVVGKHDMD 458

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           ++                L  +    +            ++ A      Y   D  VT +
Sbjct: 459 SLAAR------------WLNHKTVTFQEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQ 506

Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  ++ P               E  L  +   I   G  +D ++    ++ +     +L+
Sbjct: 507 LHLKMWPELEKEAGPKKVFEQIEMPLLTVISRIERNGVLIDQSILAQHSKELTARLAELE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
            +   L      +    ++L+  LF + G+     T     +T + VL+      P    
Sbjct: 567 LKAHELAG-EPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKV 625

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   S+      + L   +N   GR+  +      + TGR S      QN+P  + 
Sbjct: 626 ILEHR-GLSKLKSTYTDKLPLMINPISGRVHTSYHQAV-TATGRLSSADPNLQNIPVRND 683

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   +A++G ++V AD + IE R++A ++ 
Sbjct: 684 EGRR-------------------------IRQAFVAAKGHRIVAADYSQIELRIMAHLSQ 718

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  GED++  T +  F VA  +V+ +QR   K +                   
Sbjct: 719 DKGLLDAFAQGEDIHRATASEVFGVALDKVSGEQRRSAKAINF--------------GLI 764

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  + +        ++    + +++
Sbjct: 765 YGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFERY 794

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V        Q                             +N  +    GR L   D+ 
Sbjct: 795 PGVLRYMENTRQLA--------------------------ASNGYVETLEGRRLWLPDIK 828

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLT 627
           ++ +      +   R            +Q  + DI+   M+   +           +++ 
Sbjct: 829 SSNAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDEWLEQQNDNAVRMIMQ 879

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E        A   +  LM  +      +PL  E      +
Sbjct: 880 VHDELVFEVKAEAVEEASQKIRALMEGSVQ--LDVPLLVEVGVGNNW 924


>gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62]
 gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62]
          Length = 932

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 100/716 (13%), Positives = 201/716 (28%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            + +D ET S  ++             ++  +              H             
Sbjct: 346 YVAVDTETTSLNEMR----------AELVGISLCVKAGQACYIPINHKEGANDDLFGSDK 395

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                    V+  +LK  L++  +  +  N  ++  +   C    + +     T++++ +
Sbjct: 396 LAEGQMAEAVVLSMLKPMLQDDSILKIGQNMKYDAKIFARC---GVDVAPIDDTMLMSYA 452

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  + + L         G   I                    R       +
Sbjct: 453 QNAGLHNHGMDTLSDRL--------LGHTPIPIKS----LLGTGKSAITFDRVDVAEAVK 500

Query: 160 YCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  +++ L+P    +          + L  +   +   G  VD      ++ 
Sbjct: 501 YAAEDADITLRLWQHLKPQLHVKGVTTVYETLERPLVPVLAEMEMTGIKVDRDTLSRMSN 560

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L      +    ++L   LF E G+      +T    T   VL  
Sbjct: 561 AFAQKMAGLEAEIHELAG-RSFNVGSPKQLGEILFDEMGIEGGKKGKTGAYATGADVLED 619

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVF 324
                    +V + R   S+      + L   +N   GR+  +    GA+ TGR +    
Sbjct: 620 LAIEHELPGRVLDWRQ-LSKLKSTYTDALQNHINAETGRVHTSYSIAGAN-TGRLASTDP 677

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  S                              +R   IA EGK LV  D + I
Sbjct: 678 NLQNIPIRSEEGRR-------------------------IREAFIAEEGKVLVALDYSQI 712

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA +A      +AF  G D++  T +  F+V   Q+T D R   K +         
Sbjct: 713 ELRILAHVADIPSLKQAFADGMDIHAMTASEMFDVPLDQMTSDIRRQAKAIN-------- 764

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G++                                  A          +
Sbjct: 765 ------FGVIYGIS------------------------------GFGLARNLRIPRFEAQ 788

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                + ++   +    ++     ++                          +  +    
Sbjct: 789 GFIDRYFERFPGIRTYMDDTVAFAKE--------------------------HGYVQTLF 822

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA 620
           GR +   ++G              R            +Q  + D++   M+         
Sbjct: 823 GRKINTPEIGAK----GPQAGFAKRAAINAP------IQGTAADVIRRAMVRMPDAIADQ 872

Query: 621 GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
              ++L VHDE++ E  +  +         +M +   P+    + L A+  E + +
Sbjct: 873 PAKMLLQVHDELLFEVENGAQEKLIETARDVMENAAMPAVKLDVTLTADAGEGQNW 928


>gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 897

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 211/701 (30%), Gaps = 164/701 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55
            D ET S              +  ++  +F   +         H             +  
Sbjct: 324 FDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVLD 373

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            LK    ++    VAHN  F+  VL     ++I   +   T+++A              +
Sbjct: 374 KLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSLS 431

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 K   G E IA             + +   +    +  +Y   D  +T  +F   
Sbjct: 432 ------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHF 481

Query: 176 EPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELES 224
           + L  +++ L+ L   +              G  +D       +  ++    +L+ +  +
Sbjct: 482 KALLEQDKVLFKLYCELEMPLTTILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYN 541

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280
           L      +     +L+  LF + GL     T     +T + VL    +    A  +   R
Sbjct: 542 LAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYR 600

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              S+      + L + ++++GR+  +    G + TGR S      QN+P  S    +  
Sbjct: 601 H-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK-- 656

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   IA +G  +V AD + IE R++A ++ ++  LK
Sbjct: 657 -----------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLK 693

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            F    D++  T A    ++  +V+ +QR   K +                    G++  
Sbjct: 694 VFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSAF 739

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  ++                                    +     +  ++  V E 
Sbjct: 740 GLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKEY 769

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +  +Q                          N  +    GR L   ++ +     
Sbjct: 770 MTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVMQ 803

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633
                   R            +Q  + DI+ + M+N          +   +V+ VHDE+V
Sbjct: 804 RNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELV 854

Query: 634 CETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E      E   + +  +M +       +PL+      K +
Sbjct: 855 FEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73]
 gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73]
          Length = 968

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 208/715 (29%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
               D ET S   +             ++ F+              H             
Sbjct: 380 YFAFDTETTSLDPM----------QAKLVGFSLALQPGKAAYIPLEHTAGEDGLLAGGRI 429

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN- 103
                      +LK  LEN  +  +  N  ++  V+K     DI +  +  T++L+ +  
Sbjct: 430 VPQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQY---DIVMRSFDDTMLLSYALE 486

Query: 104 --GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G + I      +       +     +   +    Y 
Sbjct: 487 AGISTHGIDVLSERW--------LGHKPITY----KDLTYNGKKIVSFAQIDLKQATLYA 534

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  +T  +++ L+P              ++ L  +   + +RG  VD  +   L+  +
Sbjct: 535 AEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGEL 594

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                 L++E+  L      +    ++L   LF + GL     T+    +T  + L    
Sbjct: 595 AQAALNLEEEIYQLVG-ERFNIASPKQLGDILFGKMGLPGGAKTKNGQWSTSAQTLEELA 653

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   + +      T   L  + TGR S      Q
Sbjct: 654 TEGHILPRKIVDWRQLAKLKSTYTDALPSYILTKTGRVHTNYSLATTSTGRLSSSEPNLQ 713

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IASEG  L+ AD + IE R
Sbjct: 714 NIPARTAEGRK-------------------------IRAAFIASEGHILLSADYSQIELR 748

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA  A      +AF  G+D++  T ++ F VA   +  D R   K +   + Y      
Sbjct: 749 ILAHFADIGALKEAFLQGQDIHAMTASQMFGVAVEGMPSDIRQRAKAINFGIIYG----- 803

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                    L                                                  
Sbjct: 804 ISSFGLANQL---------------------------------------GISRKEAGNYI 824

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +   +                                ++  +    GR 
Sbjct: 825 RLYFERFPGIEDYMEKTKMFAR--------------------------HHGYVETIFGRR 858

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621
           + Y ++               R            +Q  + DI+   M+         K  
Sbjct: 859 IHYPEIKTANP---QIRAFNERAAINAP------IQGSAADIIRRAMIQVENALEKEKLS 909

Query: 622 YDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E   ++    A ++  +M +   P+ +  +PL+ +   ++ +
Sbjct: 910 AKMLLQVHDELIFEVSKSESTKTAILIKKVMENATMPALSLSVPLEVKVIAAQNW 964


>gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493]
 gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493]
          Length = 902

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/704 (15%), Positives = 201/704 (28%), Gaps = 161/704 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET     +             ++  +F    H        HD           
Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            + + LK  LE+ + TI+  N  ++  VL     L I   +   TL+ +      S    
Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIR-AKTYDTLLASYVLNSSSTRHD 431

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +              K L     K E       +    +         Y   D  VT ++
Sbjct: 432 L---------NTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQL 482

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +L PL              E  L  +   +  RG  VD A+    +  +      L+Q
Sbjct: 483 HHKLMPLIEKEKNLKKVFEQIEMPLVPILMKMEMRGVLVDTAMLQAQSIELGGRIALLEQ 542

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+T L+ E  L +   T     +T + VL       P    +
Sbjct: 543 QAYKLAG-REFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDYPLPKVI 601

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   ++      + L   ++   R   T      + TGR S      QN+P  +   
Sbjct: 602 LEHR-SLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEG 660

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +                         +R   IA  G ++V AD + +E R++A ++ + 
Sbjct: 661 RK-------------------------IRRAFIAPPGFQMVAADYSQVELRIIAHISKDP 695

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +KAF+   D++  T A  F V   QVT +QR   K +                    G
Sbjct: 696 SLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------GLLYG 741

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                    +        +     + +++ +
Sbjct: 742 MSSFGL------------------------------GRQLGIGRDLAKEYIDIYFKRYPK 771

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E   ++                                   +    GR +   D+  +
Sbjct: 772 VHEYMQKIRIVAFT--------------------------QGYVETLFGRRVYLPDIHAS 805

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
                   R   R            +Q  + DI+   M+  +           +++ VHD
Sbjct: 806 NM---QRRRAAERAAINAP------MQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHD 856

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E  + D       +   M      A  +PL  +      +
Sbjct: 857 ELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898


>gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01]
 gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01]
          Length = 930

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 101/703 (14%), Positives = 194/703 (27%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  D+         HD            + 
Sbjct: 354 AFDTETDSLDYMV----------ANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +VL     +++   +   T++ +              
Sbjct: 404 AQLKPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 461

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++        Y   D  VT  +  
Sbjct: 462 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLDEASPYAAEDADVTLRLHN 511

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     ++             L  +   I   G  +D       +  +     +L+Q+ 
Sbjct: 512 RLFANIEQDDKLKTVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLDELEQKA 571

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL         T +T + VL       P    +  
Sbjct: 572 YEI-AEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLILE 630

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 631 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 689

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 690 -------------------------IRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQAL 724

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V+   V+ +QR   K +                    G++
Sbjct: 725 LDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVN--------------FGLIYGMS 770

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 771 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 800

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   A                                +    GR L   ++ +   
Sbjct: 801 QYMEDTRSAA--------------------------SEQGFVETIFGRRLHLPEIQSRNG 834

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 835 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 885

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S + +LM S       +PL AE      +
Sbjct: 886 LVFEVEESSLSEIESKVQNLMESAAE--LKVPLVAEAGHGDNW 926


>gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18]
 gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 897

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/702 (15%), Positives = 211/702 (30%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S              +  ++  +F   +         H             + 
Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK    ++    VAHN  F+  VL     ++I   +   T+++A              
Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDIDSL 430

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +      K   G E IA             + +   +    +  +Y   D  +T  +F  
Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
            + L  +++ L+ L   +              G  +D       +  ++    +L+ +  
Sbjct: 481 FKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +     +L+  LF + GL     T     +T + VL    +    A  +   
Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++++GR+  +    G + TGR S      QN+P  S    + 
Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA +G  +V AD + IE R++A ++ ++  L
Sbjct: 657 ------------------------IREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLL 692

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           K F    D++  T A    ++  +V+ +QR   K +                    G++ 
Sbjct: 693 KVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  ++                                    +     +  ++  V E
Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q                          N  +    GR L   ++ +    
Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632
                    R            +Q  + DI+ + M+N          +   +V+ VHDE+
Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853

Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E      E   + +  +M +       +PL+      K +
Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus]
          Length = 924

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/698 (15%), Positives = 203/698 (29%), Gaps = 160/698 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHDPVMPQVLK 58
           L ID ET S            A    ++  AF ++            D      + + L 
Sbjct: 355 LAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLA 404

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
             L       V  N  ++  VL     + +P   +  T+V         P  L  +    
Sbjct: 405 PILRRAQR-KVGQNLKYDLVVLARH-GVQVPP-PYFDTMVAHYLIAPEEPHNLDVLARQY 461

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----- 171
                +M    ELI                K     +    G Y   D  +  ++     
Sbjct: 462 --LRYQMVSITELI----------GSGRDQKSMRDVSIDEVGPYACEDTDIALQLADVLA 509

Query: 172 -----FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   +   G C+D A+   + + ++ E  +L+ ++  + 
Sbjct: 510 AELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRAVLREIGKQLEAELHELEVKIYEVA 569

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L   LF + GL     T     +T + VL       P    + + R  
Sbjct: 570 GV-EFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRH- 627

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++     ++ L   ++ +     T      + TGR S      QN+P  +    E    
Sbjct: 628 LAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGRE---- 683

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R   +   G KL+ AD   IE R+LA ++G++   +AF
Sbjct: 684 ---------------------IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++  T AR F V P QVT +QR                          G++    
Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRA--------------KMVNYGIPYGIS---- 764

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                         A          + + + +++    V+    
Sbjct: 765 --------------------------AWGLAQRLRCSTREAQELIEEYQRAFPGVTRY-- 796

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            LH+  E+  + G                             GR     ++ +      +
Sbjct: 797 -LHRVVEEARQKGYVETLL-----------------------GRRRYVPNINSRNRAERS 832

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q    D++   M++             ++L VHDE+V E 
Sbjct: 833 M---AERIA------VNMPIQGTQADMIKLAMVHIYHRLKREGYRAKMLLQVHDELVFEM 883

Query: 637 PDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           P  +      L    M       +G+P++ +      +
Sbjct: 884 PPEEVEPVRQLVEQEMKQALPL-EGVPIEVDIGVGDNW 920


>gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331]
 gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331]
          Length = 902

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/704 (15%), Positives = 201/704 (28%), Gaps = 161/704 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET     +             ++  +F    H        HD           
Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            + + LK  LE+ + TI+  N  ++  VL     L I   +   TL+ +      S    
Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIR-AKTYDTLLASYVLNSSSTRHD 431

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +              K L     K E       +    +         Y   D  VT ++
Sbjct: 432 L---------NTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQL 482

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +L PL              E  L  +   +  RG  VD A+    +  +      L+Q
Sbjct: 483 HHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSLELGGRIALLEQ 542

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+T L+ E  L +   T     +T + VL       P    +
Sbjct: 543 QAYKLAG-REFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDYPLPKVI 601

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   ++      + L   ++   R   T      + TGR S      QN+P  +   
Sbjct: 602 LEHR-SLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEG 660

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +                         +R   IA  G ++V AD + +E R++A ++ + 
Sbjct: 661 RK-------------------------IRRAFIAPPGFQMVAADYSQVELRIIAHISKDP 695

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +KAF+   D++  T A  F V   QVT +QR   K +                    G
Sbjct: 696 SLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------GLLYG 741

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                    +        +     + +++ +
Sbjct: 742 MSSFGL------------------------------GRQLGIGRDLAQEYIDIYFKRYPK 771

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E   ++                                   +    GR +   D+  +
Sbjct: 772 VHEYMQKIRIVAFT--------------------------QGYVETLFGRRVYLPDIHAS 805

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
                   R   R            +Q  + DI+   M+  +           +++ VHD
Sbjct: 806 NM---QRRRAAERAAINAP------MQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHD 856

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E  + D       +   M      A  +PL  +      +
Sbjct: 857 ELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898


>gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4]
 gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1047

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/726 (15%), Positives = 201/726 (27%), Gaps = 185/726 (25%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
             + +D ET +            A    ++  +              H             
Sbjct: 448  VIAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGE 497

Query: 51   -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
                                 ++LK  LE+     V  N  ++ +VL       I +  +
Sbjct: 498  SGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVTPF 554

Query: 94   ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              T++++           +  +             G + I                    
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----ADVAGTGRNKVTFD 602

Query: 151  REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200
            R A      Y   D  VT  +++ ++P    E            L  +   +   G  +D
Sbjct: 603  RVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAID 662

Query: 201  VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257
              +   L+        +L++E++             +++   LF + GL     T +   
Sbjct: 663  RNMLSRLSGDFSQILARLEEEIQEDAG-ERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQW 721

Query: 258  -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
             T   +L    +      +   N  + S+      ++L +  +       T   L A+ T
Sbjct: 722  ATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTT 781

Query: 317  GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
            GR S      QN+P  +                              +R   +A EGKKL
Sbjct: 782  GRLSSSDPNLQNIPIRTEEGRR-------------------------IRRAFVAPEGKKL 816

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
            + AD + IE R+LA +A      +AFE G D++  T +  F VA  Q+T D R   K + 
Sbjct: 817  ISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTIN 876

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                               G++                                  A   
Sbjct: 877  --------------FGIIYGIS------------------------------AFGLADRL 892

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                       K + ++   + +    +        E G                     
Sbjct: 893  GIGREEASAFIKQYFERFPGIRDY---IDTTKRSCREKGYVTTL---------------- 933

Query: 557  NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    GR   Y  + +N      +     R+           +Q  + DI+   M  
Sbjct: 934  -------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTR 977

Query: 617  ATKAG------YDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEG 667
               A         ++L VHDE+V E PD +      ++  +M   P+ A    +PL  E 
Sbjct: 978  MEDALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037

Query: 668  YESKRY 673
              +  +
Sbjct: 1038 RAAGNW 1043


>gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4]
          Length = 1052

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/726 (15%), Positives = 201/726 (27%), Gaps = 185/726 (25%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
             + +D ET +            A    ++  +              H             
Sbjct: 453  VIAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGE 502

Query: 51   -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
                                 ++LK  LE+     V  N  ++ +VL       I +  +
Sbjct: 503  SGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVTPF 559

Query: 94   ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              T++++           +  +             G + I                    
Sbjct: 560  DDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----ADVAGTGRNKVTFD 607

Query: 151  REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200
            R A      Y   D  VT  +++ ++P    E            L  +   +   G  +D
Sbjct: 608  RVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAID 667

Query: 201  VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257
              +   L+        +L++E++             +++   LF + GL     T +   
Sbjct: 668  RNMLSRLSGDFSQILARLEEEIQEDAG-ERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQW 726

Query: 258  -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
             T   +L    +      +   N  + S+      ++L +  +       T   L A+ T
Sbjct: 727  ATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTT 786

Query: 317  GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
            GR S      QN+P  +                              +R   +A EGKKL
Sbjct: 787  GRLSSSDPNLQNIPIRTEEGRR-------------------------IRRAFVAPEGKKL 821

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
            + AD + IE R+LA +A      +AFE G D++  T +  F VA  Q+T D R   K + 
Sbjct: 822  ISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTIN 881

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                               G++                                  A   
Sbjct: 882  --------------FGIIYGIS------------------------------AFGLADRL 897

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                       K + ++   + +    +        E G                     
Sbjct: 898  GIGREEASAFIKQYFERFPGIRDY---IDTTKRSCREKGYVTTL---------------- 938

Query: 557  NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    GR   Y  + +N      +     R+           +Q  + DI+   M  
Sbjct: 939  -------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTR 982

Query: 617  ATKAG------YDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEG 667
               A         ++L VHDE+V E PD +      ++  +M   P+ A    +PL  E 
Sbjct: 983  MEDALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1042

Query: 668  YESKRY 673
              +  +
Sbjct: 1043 RAAGNW 1048


>gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
 gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4]
          Length = 1047

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/726 (15%), Positives = 201/726 (27%), Gaps = 185/726 (25%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
             + +D ET +            A    ++  +              H             
Sbjct: 448  VIAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGE 497

Query: 51   -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
                                 ++LK  LE+     V  N  ++ +VL       I +  +
Sbjct: 498  SGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVRPF 554

Query: 94   ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              T++++           +  +             G + I                    
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----ADVAGTGRNKVTFD 602

Query: 151  REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200
            R A      Y   D  VT  +++ ++P    E            L  +   +   G  +D
Sbjct: 603  RVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAID 662

Query: 201  VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257
              +   L+        +L++E++             +++   LF + GL     T +   
Sbjct: 663  RNMLSRLSGDFSQILARLEEEIQEDAG-ERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQW 721

Query: 258  -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
             T   +L    +      +   N  + S+      ++L +  +       T   L A+ T
Sbjct: 722  ATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTT 781

Query: 317  GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
            GR S      QN+P  +                              +R   +A EGKKL
Sbjct: 782  GRLSSSDPNLQNIPIRTEEGRR-------------------------IRRAFVAPEGKKL 816

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
            + AD + IE R+LA +A      +AFE G D++  T +  F VA  Q+T D R   K + 
Sbjct: 817  ISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTIN 876

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                               G++                                  A   
Sbjct: 877  --------------FGIIYGIS------------------------------AFGLADRL 892

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                       K + ++   + +    +        E G                     
Sbjct: 893  GIGREEASAFIKQYFERFPGIRDY---IDTTKRSCREKGYVTTL---------------- 933

Query: 557  NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    GR   Y  + +N      +     R+           +Q  + DI+   M  
Sbjct: 934  -------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTR 977

Query: 617  ATKAG------YDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEG 667
               A         ++L VHDE+V E PD +      ++  +M   P+ A    +PL  E 
Sbjct: 978  MEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037

Query: 668  YESKRY 673
              +  +
Sbjct: 1038 RAAGNW 1043


>gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
 gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3]
          Length = 971

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 102/720 (14%), Positives = 201/720 (27%), Gaps = 183/720 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV------------- 52
            D ET S            A    +   +     +        H+               
Sbjct: 379 FDTETSSLS----------ATHAGLCGVSLAVGPNEACYIPLTHEHEPQAGEGGLFGVPG 428

Query: 53  -------------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
                            LK  LEN  V  V  N+ ++  V+       I +  +  T+++
Sbjct: 429 EAREPIQQLDKAKALAKLKVLLENPSVLKVLQNAKYDLAVMAR---RGIRVAPYDDTMLI 485

Query: 100 ARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           +           +  +          +  G + +                K     A + 
Sbjct: 486 SYVLEGGLHGHGMDELAR--------LHLGHDPVPFKS----VAGTGKSQKSFRHVALKP 533

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHT 206
             +Y   D  VT  +++ L+P  ++E          + L  +   +   G  +D      
Sbjct: 534 ATQYAAEDADVTLRLWRLLKPRLAREGLSTVYETLERPLPAVLAEMETAGVRIDPDRLKR 593

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262
           L+    +   +L+ +   +      +     ++   LF E  L     T +    T   V
Sbjct: 594 LSSEFGLRMAELEAQAHEIAGRP-FNIGSPRQIGEILFGELNLPGGKKTASGQWGTDASV 652

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L            + + R   S+      + L  A +       T   L A+ TGR +  
Sbjct: 653 LEDLAATHALPRVLLDWRQ-LSKLKGTYTDALTAAADPATDRVHTSYQLAAATTGRLASS 711

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P  + +  E                         +R   IA+ G  L+ AD +
Sbjct: 712 DPNLQNIPIRTETGRE-------------------------IRQAFIAAPGHLLISADYS 746

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA +       +AF+ G D++  T +  F V    +  + R   K +   +   
Sbjct: 747 QIELRLLAHIGDIPELKRAFKAGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIV-- 804

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G++    A  +  +                                 
Sbjct: 805 ------------YGISAFGLAAQLGIDQG------------------------------E 822

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                K +  +   +    ++      Q                             +  
Sbjct: 823 AGAYIKTYFDRFPGIRTYMDKTRAEVRQA--------------------------GFVST 856

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----AT 618
             GR +    + +             R            +Q  + DI+   M+       
Sbjct: 857 VFGRRIHIPAIHSKSGAERQF---GERAAINAP------IQGAAADIIRRAMIRMPTALA 907

Query: 619 KAGY--DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
           +AG    ++L VHDE+V ETP+ +     +++  +M +   P+ A  +PL  +   +  +
Sbjct: 908 EAGLTTRMLLQVHDELVFETPEAEADRAITVIKRVMETASDPAVALTVPLVVDARAAPNW 967


>gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b]
 gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b]
          Length = 993

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/716 (15%), Positives = 202/716 (28%), Gaps = 176/716 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----------DPV 52
           + +D ET S   ++            ++  +              H              
Sbjct: 404 VAMDTETTSLDPMSC----------DLVGVSLATAPGRACYIPLRHVASAGPDLLGGGEP 453

Query: 53  MPQV---------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
            P           LK  LE   V  +A N  ++  VL  C    + +     T++++ + 
Sbjct: 454 PPAQIPFDDAIARLKPLLEARSVLKIAQNMKYDLLVLACC---GVDVAPIEDTMLISYAL 510

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   L  +         K   G E I                    R       EY
Sbjct: 511 DSGRNNHGLDELA--------KKHLGHECIPFAA----VAGSGRSFIGFARVPLDKATEY 558

Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  V   +++ L+P  + E            +  +   +  RG  +D  +   L+  
Sbjct: 559 AAEDADVALRLWRVLKPRLAAEHMTSVYETLERPMVGVLAAMERRGVAIDRNILSRLSGE 618

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
              +  +L+ E+  L      +    ++L   LF   GL     T     +T   VL   
Sbjct: 619 FAQDMARLEAEIYDLAG-ESFNLGSPKQLGDILFGRMGLPGAKKTATGAWSTSASVLEDL 677

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
            +          +  + S+      + L   +N       T   L A+ TGR S      
Sbjct: 678 AESGNTFAARILDWRQLSKLKSTYTDALPGFVNKATNRVHTSYALAATTTGRLSSSEPNL 737

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  + +  +                         +R   +A  G  L+ AD + IE 
Sbjct: 738 QNIPVRNEAGRK-------------------------IRKAFVAEPGHALISADYSQIEL 772

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +A      +AF  G D++  T +  F V    +  D R   K +           
Sbjct: 773 RLLAHIADIPQLRQAFAEGIDIHAKTASEMFGVPVQGMPSDVRRRAKAINF--------- 823

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A +           
Sbjct: 824 -----GIIYGIS------------------------------AFGLANQLGIPREEAAAY 848

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            K + ++   + +  ++  +   +    G                             GR
Sbjct: 849 IKRYFERFPGIRDYMDKTKRLVRE---QGVVTTI-----------------------FGR 882

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
              +  +G++ +          R            +Q  + DI+   M     A      
Sbjct: 883 KCHFPRIGSSNASER---AFFERAAINAP------IQGAAADIIRRAMARMDAALATAGC 933

Query: 621 GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
              +++ VHDE+V E P +  E   +++  +M   P  A    +PL+ E   ++ +
Sbjct: 934 SARMLMQVHDELVFEAPLEETETTIAVVKRVMEEAPHPAATLTVPLQVEARAAQNW 989


>gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
 gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252]
          Length = 924

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 109/698 (15%), Positives = 203/698 (29%), Gaps = 160/698 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHDPVMPQVLK 58
           L ID ET S            A    ++  AF ++            D      + + L 
Sbjct: 355 LAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLA 404

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
             L       V  N  ++  VL     +++P   +  T+V         P  L  +    
Sbjct: 405 PILRRAQR-KVGQNLKYDLVVLAQH-GVEVPP-PYFDTMVAHYLIAPEEPHNLDVLARQY 461

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----- 171
                +M    ELI                K     +    G Y   D  +  ++     
Sbjct: 462 --LRYQMVAITELI----------GSGRDQKSMRDVSIDEVGPYACEDTDIALQLADVLA 509

Query: 172 -----FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   +   G C+D  +   + + ++ E  +L+ ++  + 
Sbjct: 510 AELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKIYEVA 569

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L   LF + GL     T     +T + VL       P    + + R  
Sbjct: 570 GV-EFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRH- 627

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++     ++ L   ++ +     T      + TGR S      QN+P  +    E    
Sbjct: 628 LAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGRE---- 683

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R   +   G KL+ AD   IE R+LA ++G++   +AF
Sbjct: 684 ---------------------IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++  T AR F V P QVT +QR                          G++    
Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRA--------------KMVNYGIPYGIS---- 764

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                         A          + + + +++    V+    
Sbjct: 765 --------------------------AWGLAQRLRCSTREAQELIEEYQRAFPGVTRY-- 796

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            LH+  E+  + G                             GR     ++ +      +
Sbjct: 797 -LHRVVEEARQKGYVETLL-----------------------GRRRYVPNINSRNRAERS 832

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q    D++   M++             ++L VHDE+V E 
Sbjct: 833 M---AERIA------VNMPIQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDELVFEM 883

Query: 637 PDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           P  +      L    M       +G+P++ +      +
Sbjct: 884 PPEEVEPVRQLVEQEMKQALPL-EGVPIEVDIGVGDNW 920


>gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
 gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549]
 gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548]
          Length = 897

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 212/702 (30%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S              +  ++  +F   +         H             + 
Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK    ++    VAHN  F+  VL     ++I   +   T+++A              
Sbjct: 373 DKLKRLFADSKKVKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +      K   G E IA             + +   +    +  +Y   D  +T  +F  
Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNH 480

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
            + L  +++ L+ L   +              G  +D A     +  ++    +L+ +  
Sbjct: 481 FKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKCY 540

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +     +L+  LF + GL     T     +T + VL    +    A  +   
Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKMGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++++GR+  +    G + TGR S      QN+P  S    + 
Sbjct: 600 RH-LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G  +V AD + IE R++A ++ ++  L
Sbjct: 657 ------------------------IREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLL 692

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF    D++  T A    ++  +V+ +QR   K +                    G++ 
Sbjct: 693 KAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAIN--------------FGLIYGMSA 738

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  ++                                    +     +  ++  V E
Sbjct: 739 FGLARQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q                          N  +    GR L   ++ +    
Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632
                    R            +Q  + DI+ + M+N          +   +V+ VHDE+
Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDEL 853

Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E      E   + +  +M +       +PL+      K +
Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893


>gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 1047

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 109/726 (15%), Positives = 200/726 (27%), Gaps = 185/726 (25%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
             + +D ET +            A    ++  +              H             
Sbjct: 448  VIAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGE 497

Query: 51   -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
                                 ++LK  LE+     V  N  ++ +VL       I +  +
Sbjct: 498  SGAGADASDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVRPF 554

Query: 94   ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              T++++           +  +             G + I                    
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----ADVAGTGRNKVTFD 602

Query: 151  REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200
              A      Y   D  VT  +++ ++P    E            L  +   +   G  +D
Sbjct: 603  HVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAID 662

Query: 201  VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257
              +   L+        +L++E++             +++   LF + GL     T +   
Sbjct: 663  RNMLSRLSGDFSQILARLEEEIQEDAG-ERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQW 721

Query: 258  -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
             T   +L    +      +   N  + S+      ++L +  +       T   L A+ T
Sbjct: 722  ATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTT 781

Query: 317  GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
            GR S      QN+P  +                              +R   +A EGKKL
Sbjct: 782  GRLSSSDPNLQNIPIRTEEGRR-------------------------IRRAFVAPEGKKL 816

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
            + AD + IE R+LA +A      +AFE G D++  T +  F VA  Q+T D R   K + 
Sbjct: 817  ISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTIN 876

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                               G++                                  A   
Sbjct: 877  --------------FGIIYGIS------------------------------AFGLADRL 892

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                       K + ++   + +    +        E G                     
Sbjct: 893  GIGREEASAFIKQYFERFPGIRDY---IDTTKRSCREKGYVTTL---------------- 933

Query: 557  NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    GR   Y  + +N      +     R+           +Q  + DI+   M  
Sbjct: 934  -------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTR 977

Query: 617  ATKAG------YDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEG 667
               A         ++L VHDE+V E PD +      ++  +M   P+ A    +PL  E 
Sbjct: 978  MEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037

Query: 668  YESKRY 673
              +  +
Sbjct: 1038 RAAGNW 1043


>gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
 gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212]
          Length = 902

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/704 (15%), Positives = 201/704 (28%), Gaps = 161/704 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET     +             ++  +F    H        HD           
Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            + + LK  LE+ + TI+  N  ++  VL     L I   +   TL+ +      S    
Sbjct: 374 EVLRKLKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIR-AKTYDTLLASYVLNSSSTRHD 431

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +              K L     K E       +    +         Y   D  VT ++
Sbjct: 432 L---------NTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQL 482

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +L PL              E  L  +   +  RG  VD A+    +  +      L+Q
Sbjct: 483 HHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELSGRIALLEQ 542

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+T L+ E  L +   T     +T + VL       P    +
Sbjct: 543 QAYKLAG-REFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDYPLPKVI 601

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   ++      + L   ++   R   T      + TGR S      QN+P  +   
Sbjct: 602 LEHR-SLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEG 660

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +                         +R   IA  G ++V AD + +E R++A ++ + 
Sbjct: 661 RK-------------------------IRRAFIAPPGFQMVAADYSQVELRIIAHISKDP 695

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +KAF+   D++  T A  F V   QVT +QR   K +                    G
Sbjct: 696 SLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------GLLYG 741

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                    +        +     + +++ +
Sbjct: 742 MSSFGL------------------------------GRQLGIGRDLAQEYIDIYFKRYPK 771

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E   ++                                   +    GR +   D+  +
Sbjct: 772 VHEYMQKIRIVAFT--------------------------QGYVETLFGRRVYLPDIHAS 805

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
                   R   R            +Q  + DI+   M+  +           +++ VHD
Sbjct: 806 NM---QRRRAAERAAINAP------MQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHD 856

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E  + D       +   M      A  +PL  +      +
Sbjct: 857 ELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898


>gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1]
 gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1]
          Length = 1047

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/726 (15%), Positives = 201/726 (27%), Gaps = 185/726 (25%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
             + +D ET +            A    ++  +              H             
Sbjct: 448  VIAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGE 497

Query: 51   -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
                                 ++LK  LE+     V  N  ++ +VL       I +  +
Sbjct: 498  SGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVRPF 554

Query: 94   ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              T++++           +  +             G + I                    
Sbjct: 555  DDTMLISYVLDAGKGGHGMDELARRH--------LGHQPITF----ADVAGTGRNKVTFD 602

Query: 151  REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200
            R A      Y   D  VT  +++ ++P    E            L  +   +   G  +D
Sbjct: 603  RVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAID 662

Query: 201  VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257
              +   L+        +L++E++             +++   LF + GL     T +   
Sbjct: 663  RNMLSRLSGDFSQILARLEEEIQEDAG-ERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQW 721

Query: 258  -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
             T   +L    +      +   N  + S+      ++L +  +       T   L A+ T
Sbjct: 722  ATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTT 781

Query: 317  GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
            GR S      QN+P  +                              +R   +A EGKKL
Sbjct: 782  GRLSSSDPNLQNIPIRTEEGRR-------------------------IRRAFVAPEGKKL 816

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
            + AD + IE R+LA +A      +AFE G D++  T +  F VA  Q+T D R   K + 
Sbjct: 817  ISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTIN 876

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                               G++                                  A   
Sbjct: 877  --------------FGIIYGIS------------------------------AFGLADRL 892

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                       K + ++   + +    +        E G                     
Sbjct: 893  GIGREEASAFIKQYFERFPGIRDY---IDTTKRSCREKGYVTTL---------------- 933

Query: 557  NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    GR   Y  + +N      +     R+           +Q  + DI+   M  
Sbjct: 934  -------FGRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTR 977

Query: 617  ATKAG------YDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--KGLPLKAEG 667
               A         ++L VHDE+V E PD +      ++  +M   P+ A    +PL  E 
Sbjct: 978  MEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEA 1037

Query: 668  YESKRY 673
              +  +
Sbjct: 1038 RAAGNW 1043


>gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1]
          Length = 698

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 235/695 (33%), Positives = 327/695 (47%), Gaps = 57/695 (8%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALE-----NTDVTIVAHNS-YFERTVLKACFNLD 87
           A+ FDD PV++WDC +   MP  L  AL      N+ + +V HN   F+R ++K C+  D
Sbjct: 8   AYAFDDEPVQVWDCTNGSDMPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFD 67

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR 145
           IP+   I T++ A  + LP +L A+ E L +S+   K + GK LI RF K         R
Sbjct: 68  IPVSNTIDTMIWAFRHALPGSLDALCEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRR 127

Query: 146 -NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVA 202
                H + W LF +Y   D+T  RE+F +L     S  E  +  LDQ INDRG+ VDVA
Sbjct: 128 YTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVA 187

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
           LA    + V+  + +L +E +    G ++    L  L+          + +  ++T    
Sbjct: 188 LAEAAIEAVEKHKAQLQEEAQRKYGGSLTGKDFLPILRELAPAH---RIHNAQKSTL-ND 243

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L ++  L   A  +   R+ A+ +A  K N L+   +SD R RG +Q+ GA RT R++G 
Sbjct: 244 LLADDDLPDDASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGK 303

Query: 323 VFPPQNLPRPSRSHEELDQIITHL-PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
            F PQNL R     +ELD+ I+ L         D  ++ +  VRSC+I   G K VVAD 
Sbjct: 304 GFQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPETGHKFVVADY 363

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA---QVTKDQRAIGKVMELA 438
           + +E R LAW+AGE+  L  F  G D+Y  T  + F + P    +  KD R IGK  EL 
Sbjct: 364 SNVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELG 423

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ------------ 486
           LGY GG  AF + A   GL+L   A  +        W        W +            
Sbjct: 424 LGYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGE 483

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           ++     I D  +   C+ +K+ WR+ H      W ++  A    I N         R V
Sbjct: 484 KDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGV 543

Query: 547 PLVYM--------KKDKNNLILMLPSGRSLVYR------------------DVGNNRSYL 580
                        K     L + LPSGR + Y                   +V       
Sbjct: 544 KFSRNVETDNNGNKVAGWWLRMTLPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGE 603

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           N  TRQ   +YTY GKL EN  QA+ RD+LA  ++N    GY IVL VHDEI+CETPD  
Sbjct: 604 NQLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLP 663

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+N + L  LM   P WA+G PL AEG E KRY K
Sbjct: 664 EYNVAELERLMCELPEWAEGFPLVAEGAEMKRYAK 698


>gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978]
          Length = 879

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 305 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQLNRE 354

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  +++ +           
Sbjct: 355 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 412

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 413 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 460

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 461 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 520

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P  
Sbjct: 521 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 577

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + L+E  ++D     T      + TGR S      QN+P   
Sbjct: 578 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 635

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 636 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 671

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 672 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 717

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 718 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 747

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 748 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 781

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 782 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 832

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  + K +
Sbjct: 833 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 875


>gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
 gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244]
          Length = 921

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/706 (15%), Positives = 196/706 (27%), Gaps = 169/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
               ID ET +                 ++ F+  FD H        HD           
Sbjct: 347 DHFAIDTETTNLD----------YRIAELVGFSVAFDAHDAYYVPVAHDYEGAPEQLNRE 396

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            + + +K  LEN  V  + H+  ++  +      + I    +  T++ +           
Sbjct: 397 HVLEQIKPILENEQVKKIGHHLKYDAHIFANH-GITIQ-GWYFDTMLASYVLNAAATRHG 454

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 455 MDDVARVY------------LSHLTTTFEQIAGKGAKQKSFNQIELEVAAHYAAEDAHVT 502

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 503 YRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETMQT 562

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   L      +    +++   LF   GL     T     +T + +L       P A
Sbjct: 563 LENQATELAG-EAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEKI--EHPLA 619

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRP 332
             +  +R   ++      + LVE  + D   R    +  A + TGR S      QN+P  
Sbjct: 620 EVILEHR-GLAKLKNTYTDRLVEQSH-DSTHRVHTSYHQALTATGRLSSTDPNLQNIPIR 677

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R   IA EG+ L+ AD + IE R++A  
Sbjct: 678 TPIGR-------------------------QIRRAFIAPEGRVLLAADYSQIELRLMAHF 712

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   + AF+ G+D++  T A    +    VT DQR   K +                 
Sbjct: 713 SQDDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNF--------------G 758

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++                                       F           + Q
Sbjct: 759 LLYGMSEFGLTRQ------------------------------LGFTREESRSYIARYFQ 788

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +      Q   +                             +    GR L   D
Sbjct: 789 RYPGVLDYMERTRQIARE--------------------------QGFVETILGRRLYTPD 822

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTV 628
           +  N   +        R             Q  + DI+   M+       K    ++L V
Sbjct: 823 ILANNKMIKQA---AERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQV 873

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E  +T        +  +M S       +P   E  + + +
Sbjct: 874 HDELVFEADETIADELSKQIAEVMQSVLD--ISVPFVVEVGQGQNW 917


>gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6]
 gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6]
          Length = 934

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/705 (16%), Positives = 202/705 (28%), Gaps = 168/705 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + ID ET S   +             +I  +F             HD            +
Sbjct: 359 VAIDTETDSLDPMR----------ARIIGISFAVQPLEAAYVPVGHDYPGAPDQLPLDEV 408

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111
              L+  LE+     V  N  ++  V      + +  +    T++ +       P  L +
Sbjct: 409 LARLRPWLEDAGTRKVGQNIKYDSHVFANH-GVTVRGYA-HDTMLESYVLEAHKPHGLAS 466

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L       E          P    A      Y   D  +T ++
Sbjct: 467 LADRH------------LGRSGINYEDLCGKGAGQIPFSHVAVDQASTYSGEDSEMTLQV 514

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E     +   I   G  +D  +    +  +      L+Q
Sbjct: 515 HQTLWPQLEAEPRLRELYETIEMPSAEVLVRIERNGVLIDAGVLARQSHQLAQRMHTLEQ 574

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQV 276
           E  ++      +    +++   LF + GL ++  T     +T + VL       P   ++
Sbjct: 575 EAHAIAGQP-FNMSSPKQIGEILFTKLGLPVKKKTASGAPSTDEEVLQELAADYPLPARI 633

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
             +R   ++      + L   +N   GR+        A  TGR S      QN+P  +  
Sbjct: 634 LEHR-SLAKLKGTYTDKLPLMVNPSTGRVHTNYAQAVA-ITGRLSSNDPNLQNIPIRTAE 691

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       VR   +A+ G KLV AD + IE R++A ++G+
Sbjct: 692 GRR-------------------------VREAFVAAPGHKLVSADYSQIELRLMAHISGD 726

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              LKAF  G D++  T A  FN+A A VT +Q                           
Sbjct: 727 ANLLKAFADGMDVHRATAAEVFNIAAADVTSEQ--------------------------- 759

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                              +    NF           A        A     + +  ++ 
Sbjct: 760 -----------------RRYAKTINFGLIYGMGAFGLAASLGIEQKAARDYIERYFARYP 802

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V    +E      Q                             +    GR +V  ++  
Sbjct: 803 DVKRYMDETKAGAAQ--------------------------LGHVETLFGRRIVLPEIKG 836

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
                        R+           +Q  + D++   M+   KA         +++ VH
Sbjct: 837 GNGPRKAA---AERQAINAP------MQGTAADLIKLAMIAVQKAIDDEGRASKMIMQVH 887

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P+ +   A   L  LM         +PL AE  E   +
Sbjct: 888 DELVLEVPEAELGWAREALPRLMAGVAQ--LKVPLVAEVGEGANW 930


>gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
 gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
          Length = 704

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 222/702 (31%), Positives = 329/702 (46%), Gaps = 33/702 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L++D ET S  DL + G  +YAE    +LFA+   D P  +WDC     M   L  A+++
Sbjct: 5   LWLDRETWSERDLKEVGTARYAEVAEDLLFAYAIGDGPARVWDCTA-EEMHDELYHAMDD 63

Query: 64  TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL-- 118
            D    AHN++F+RT+           I   RW C++ +A S+ LP  L  +   LK+  
Sbjct: 64  ADSEAWAHNAFFDRTIHNGPAQAHLPRIADERWRCSMAMALSHALPGGLADLCRVLKVPA 123

Query: 119 SSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              K+ +GK+L+  F + +       R  +  H   W  F +Y   D+T  RE  +R+  
Sbjct: 124 DMAKLADGKKLVRLFTQPQPDNRKVRRATRLTHPAEWERFKQYAANDITAMRECVRRMPA 183

Query: 178 LSSKE--QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            +        W+LDQ IN RG+ VD AL     +    E+ ++      L+ G   +   
Sbjct: 184 WNWDASAIAEWHLDQRINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQ-FTPGQ 242

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            EK + +L    G  L++    T  +V+  +  L     ++    + +++++  K   L 
Sbjct: 243 REKFRVYLGQRLGYELDNTQAGTF-QVMLRDPGLPADVREMIELAIASNKTSTAKYAALD 301

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPTSITS 352
            A++ DGR RG LQF GASRT RW+G +F PQNLP       E+ +       + T    
Sbjct: 302 PAVSPDGRFRGGLQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHALF 361

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
             + + + +  +R CV+A+ GKKLVVADL+ IE RVLAW+A E+WKLKAF   +      
Sbjct: 362 FDNLMLLGAAALRGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTGPD 421

Query: 413 YARSFNVAPAQVTKDQRAI------GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
                 V+                 GKV +LA GYQGG   +Q  A + GL +  F   +
Sbjct: 422 LYNITAVSIIGGDPWNVEKKNRNAFGKVPDLASGYQGGVAGYQTFARSYGLKMADFWDTI 481

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           +     +    A            E    D     A E  K AWR +H   S+ W  L  
Sbjct: 482 QQMVPAQHVAKAWENLASWGHPQLESLEIDEIEWVASETCKLAWRARHPATSKFWYALGG 541

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG------------ 574
           A +  I N  ++              + +  L++ LPSGR L Y +              
Sbjct: 542 AAKDAIRNPGSVFTAGPFIKLRTVSHRGQKWLVVRLPSGRFLTYFEPHIVGQGRDETIAY 601

Query: 575 -NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
               S    TTRQ  R +T+GGK+T N  Q ++RDILA  M  A   GY  VL+VHDE +
Sbjct: 602 WGEASEEGKTTRQWVRVFTHGGKMTGNCCQTIARDILAPSMAVAENRGYLPVLSVHDEAL 661

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E PDTD+F A+ L  ++ +NP+WA  LPL A G+E+ RY+K
Sbjct: 662 TEVPDTDDFTAAGLVEILATNPAWAPDLPLAAAGFEAYRYKK 703


>gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse]
 gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse]
          Length = 968

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 104/713 (14%), Positives = 210/713 (29%), Gaps = 174/713 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------- 51
             D ET S   L             ++ F+              H               
Sbjct: 382 AFDTETTSLDPL----------QAKLVGFSLALQPGKAAYVPLEHFEGGGDLLGGGRIVG 431

Query: 52  -----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-- 104
                    +LK  LE+  V  +  N  ++  V+K    + I    +  T++L+ +    
Sbjct: 432 QIETRKALTLLKPILEDQAVLKIGQNIKYDWLVMKQY-GIVIRC--FDDTMLLSYALDAG 488

Query: 105 -LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            L   + A+ E           G + IA     +       +     +   +    Y   
Sbjct: 489 ALTHNMDALSERW--------LGHKPIAY----KDLTHNGKKITSFAQVDLKQATLYAAE 536

Query: 164 DVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           D  +T  +++ L+P              ++ L  +   + +RG  VD  +   L+  +  
Sbjct: 537 DADITLRLWQVLKPQLVARGMTKVYERLDRPLVEVLAKMEERGILVDRQILLRLSGELAQ 596

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL 269
               L++E+  L      +    ++L   LF +  L     T++    T  + L      
Sbjct: 597 AAFILEEEIYQLAG-EKFNLASPKQLGGILFGKMSLPGGTRTKSGQWSTSAQTLEELAAE 655

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                +   +  + ++      + L   + S      T   L  + TGR S      QN+
Sbjct: 656 GHILPRKIIDWRQLAKLKSTYADALPSYILSKTGRIHTNYSLAITSTGRLSSSEPNLQNI 715

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +    +                         +R+  IA +G  L+ AD + IE R+L
Sbjct: 716 PVRTTEGRK-------------------------IRTAFIAPKGHMLLSADYSQIELRIL 750

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A      +AF  G+D++  T ++ F VA   +  D R   K +              
Sbjct: 751 AHIADIIALKEAFAQGQDIHAITASQMFGVAIEGMNSDIRRRAKAIN------------- 797

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                 G++                                  A +            + 
Sbjct: 798 -FGIIYGIS------------------------------AFGLANQLGLSRQEASHYIQL 826

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           + ++   + +                                     N  +    GR + 
Sbjct: 827 YFERFPGIKDYMEMTKNFA--------------------------CRNGYVETIFGRRIH 860

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYD 623
           Y ++               R            +Q  + DI+   M+         K    
Sbjct: 861 YPEIKAANL---QVRSFNERAAINAP------IQGSAADIIRRAMIQMENALEKEKLSAK 911

Query: 624 IVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
           ++L VHDE++ E P+ + E   +++  +M +   P  +  +PL+ +   ++ +
Sbjct: 912 MLLQVHDELIFEVPEDESERTMALVKKVMENATMPVLSLSVPLEVKVMAAQNW 964


>gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
 gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1]
          Length = 928

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/715 (15%), Positives = 196/715 (27%), Gaps = 178/715 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------------- 51
            D ET     L             ++  +             +H P              
Sbjct: 343 FDTETTGLDPLR----------ARLVGVSLAVAPGRACYIPVLHAPAQAQGDLLGGPSTD 392

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                        LK  L +  V  V HN  ++  V+       + +  +  T++L+ + 
Sbjct: 393 APQIIPAAETLARLKPLLADPSVLKVGHNIKYDMQVMAMQ---GLAVEPFDDTMLLSYAL 449

Query: 104 GL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   L  +          +  G   I                    R       +Y
Sbjct: 450 DGASHGHGLDELCL--------LHLGHANIPF----SEVCGSGRNQVTFDRVPLDKARDY 497

Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  +   L+P            + E+ L  +   +   G  VD A    L++ 
Sbjct: 498 AAEDADMTLRLHALLKPRLLSERMVSVYETLERPLVPVIAAMERDGIKVDRAQLMALSED 557

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
                T+L+ E+ +L  G   +    ++L   LF    L     T+T    T   VL   
Sbjct: 558 FGRRLTELETEVIALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGADVLEEL 617

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
             L     ++ + R   S+      + LV  +N       T   L A+ TGR S      
Sbjct: 618 APLHALPARLLDWRQ-LSKLKGTYTDALVAQINPATGRVHTSYSLAATTTGRLSSSDPNL 676

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +    +                         +R   +A  GKKLV AD + IE 
Sbjct: 677 QNIPIRTEEGRK-------------------------IRHAFVAEPGKKLVSADYSQIEL 711

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A +A       AF  G D++  T ++ F V    +    R   K +           
Sbjct: 712 RLVAHVAEIAGLRDAFAHGADIHAITASQVFGVPLDGIDPALRRRAKAINF--------- 762

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++    A                                        +  
Sbjct: 763 -----GIIYGISAFGLAAQ------------------------------LGIPQGEAKAY 787

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            +A+  ++  +        +                                 +    GR
Sbjct: 788 IEAYFARYPEIRAYMERTKEEARD--------------------------QGFVTTLFGR 821

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
            +    + +    +        R    G       +Q  + DI+   M+    A     L
Sbjct: 822 KVFTPGIKDKNGAMR---AFAERAAINGP------IQGGAADIIKRAMIRLPAALAAAGL 872

Query: 627 ------TVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                  VHDE+V E P+ +     +++  +M +  S    +PL  E   +  + 
Sbjct: 873 SARLLLQVHDELVLEAPEAEADATVAVVKQVMEAAAS--LSVPLLVEAGIADTWG 925


>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
 gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030]
          Length = 931

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 197/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  D+         HD            + 
Sbjct: 355 AFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL     +++   ++  T++ +              
Sbjct: 405 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMDS 462

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++        Y   D  VT  +  
Sbjct: 463 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHN 512

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     ++             L  +   I   G  +D       +  +     +L+Q+ 
Sbjct: 513 RLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKA 572

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL         T +T + VL       P    +  
Sbjct: 573 YEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPKLILE 631

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 632 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 690

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 691 -------------------------IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQAL 725

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V+  QV+ +QR   K +                    G++
Sbjct: 726 LDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVN--------------FGLIYGMS 771

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 772 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 801

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   A     +     I                         GR L   ++ +   
Sbjct: 802 QYMEDTRSAA--ADKGYVETIF------------------------GRRLHLPEIKSRNG 835

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 836 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 886

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S +  LM S       +PL AE      +
Sbjct: 887 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 927


>gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586]
 gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586]
          Length = 938

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 102/703 (14%), Positives = 202/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +    +         HD            + 
Sbjct: 362 AFDTETDSLDYMV----------ANLVGVSCAVAEGEAAYIPVAHDYLDAPQQLDREWVI 411

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 412 AQLKPLLEDESKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 469

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++   +   +Y   D  VT  + +
Sbjct: 470 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQ 519

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  ++  L    +Q + +   +L+++ 
Sbjct: 520 RISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMINDMLLSAQSQEIALRLDELEKKA 579

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 580 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 638

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N +     T      + TGR S      QN+P  +     
Sbjct: 639 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 697

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 698 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 732

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 733 LDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GLIYGMS 778

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 779 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 808

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      +                             +    GR L   ++ +   
Sbjct: 809 QYMEDTRSRAAE--------------------------LGYVETIFGRRLHLPEITSRNG 842

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 843 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDE 893

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S +  LM S    A  +PL AE      +
Sbjct: 894 LVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934


>gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2]
 gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2]
 gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 993

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 216/613 (35%), Positives = 326/613 (53%), Gaps = 26/613 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP  LK   ++
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63

Query: 64  TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SS 120
           +++  V HN   F+  +LK   N+D+P+ R   TLV A ++GLP AL  + +   +    
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 121 QKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K +EGK LI+  CK         R     H E W+ F +Y   D+   REI++ L   +
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   +
Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T QR ++    + P   ++ + R+++  ++  K   L+++
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQSCTTSTSKYKALLKS 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           +++DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D
Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDD 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YV 410
            +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF   ++      Y 
Sbjct: 363 IMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YAR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     + 
Sbjct: 423 LAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
            P    +A ++ +   E    + + +      C+ +K+ WR  H +    W ++  A +Q
Sbjct: 483 PPGVKREATSWYQKSVETDKTYGLSEKIFVN-CDSLKRMWRNAHPQTVSFWYDIEDAVKQ 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---SYLNT--TTR 585
            I++       ++     + +++DK  L + LPSGRSL Y          +Y+ T   +R
Sbjct: 542 AIQSPGIAFKCRK-----LSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSR 596

Query: 586 QLTREYTYGGKLT 598
           +  R  TYGGK  
Sbjct: 597 KWERLKTYGGKSC 609



 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 54/78 (69%)

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI QA +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  W
Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974

Query: 658 AKGLPLKAEGYESKRYRK 675
           A  LPL A G+E+ RYRK
Sbjct: 975 AWDLPLSANGFETYRYRK 992


>gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
 gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111]
          Length = 902

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/704 (15%), Positives = 201/704 (28%), Gaps = 161/704 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET     +             ++  +F    H        HD           
Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLWHDYTGAPAQLDKE 373

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            + + LK  LE+ + TI+  N  ++  VL     L I   +   TL+ +      S    
Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIR-AKTYDTLLASYVLNSSSTRHD 431

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +              K L     K E       +    +         Y   D  VT ++
Sbjct: 432 L---------NTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQL 482

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +L PL              E  L  +   +  RG  VD A+    +  +      L+Q
Sbjct: 483 HHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELGGRIALLEQ 542

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+T L+ E  L +   T     +T + VL       P    +
Sbjct: 543 QAYKLAG-REFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDYPLPKVI 601

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   ++      + L   ++   R   T      + TGR S      QN+P  +   
Sbjct: 602 LEHR-SLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEG 660

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +                         +R   IA  G ++V AD + +E R++A ++ + 
Sbjct: 661 RK-------------------------IRRAFIAPPGFQMVAADYSQVELRIIAHVSKDP 695

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +KAF+   D++  T A  F V   QVT +QR   K +                    G
Sbjct: 696 SLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------GLLYG 741

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                    +        +     + +++ +
Sbjct: 742 MSSFGL------------------------------GRQLGIGRDLAQEYIDIYFKRYPK 771

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E   ++                                   +    GR +   D+  +
Sbjct: 772 VHEYMQKIRIVAFT--------------------------QGYVETLFGRRVYLPDIHAS 805

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
                   R   R            +Q  + DI+   M+  +           +++ VHD
Sbjct: 806 NM---QRRRAAERAAINAP------MQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHD 856

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E  + D       +   M      A  +PL  +      +
Sbjct: 857 ELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898


>gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
 gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056]
          Length = 952

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 99/698 (14%), Positives = 201/698 (28%), Gaps = 156/698 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            L ID ET     +          +  ++  +F   ++         +      +   L+
Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSDAENRAYYVPVPANRDEALKIVNELR 429

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
              EN +   V  N  ++  VL+    + +   +   T++                 L+ 
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVK-GKLFDTMLAHYVLQP---------ELRH 478

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   + E           E         K            Y   D  VT ++   LE  
Sbjct: 479 NMDYLAEIYLQYQTIHIDELIGARGKNQKNMRDLPAEDVYRYACEDADVTLKLKNVLEKE 538

Query: 179 S----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L  +   I   G  +D       ++   +   ++++E+ +L  G
Sbjct: 539 LKEQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALRQSSEHFTLRLQEIEKEIYALAGG 598

Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +    +++   LF    +      T+T    T + VL S +       ++   R   
Sbjct: 599 ETFNIASPKQVGEVLFDRLKIVDKAKKTKTGQYVTSEEVLESLRSKHAIIGKILEYR-GL 657

Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            +     ++ L + +N   GR+  +      + TGR S      QN+P      +E    
Sbjct: 658 KKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE---- 712

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R   I  +G +   AD + IE R++A ++ ++  + AF
Sbjct: 713 ---------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMIDAF 751

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            +G D++  T A+ + V    VT D R   K     +                G+++   
Sbjct: 752 LSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGII--------------YGISVFGL 797

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A                                        + +   + + + +V E  +
Sbjct: 798 AER------------------------------MNVPRQEAKELIDGYFETYPQVKEYMD 827

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              Q   +                          N  +     R     D+ +  + +  
Sbjct: 828 RSIQVARE--------------------------NGYVETIFHRKRFLPDINSRNAVVRG 861

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
                 R            +Q  + DI+   M               ++L VHDE+    
Sbjct: 862 Y---AERNAINAP------IQGSAADIIKVAMSLICQRLQSNNLKAKMILQVHDELNFSV 912

Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           P+ ++     +    M     +   +PLKA+    K +
Sbjct: 913 PEAEKEIIQKIVIEEMERA--YRMLVPLKADCGWGKNW 948


>gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 560

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 178/611 (29%), Positives = 276/611 (45%), Gaps = 76/611 (12%)

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHEC 141
            L +    W CT++ + + GLP +L++VG  L L  QK+ EGK LI  FC          
Sbjct: 5   GLFLNPCSWHCTMIWSATLGLPMSLESVGAVLGLDKQKLTEGKNLIKYFCLPCNPTKVNG 64

Query: 142 LYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYC 198
              RNK  H  E W LF  Y K DV V   I ++L   P+     + +YLDQTINDRG  
Sbjct: 65  GRTRNKYFHDKEKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFYLDQTINDRGIE 124

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
           +D     +  ++    +T L  EL+ +T   + +   + ++++WL    GL +E L +  
Sbjct: 125 IDSLFVESAIKLDQEVKTHLMSELKHVTG--LENPNSVLQMRSWLKEH-GLEMESLGK-- 179

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
            + V    K +  +  +V   R + ++S+V K   +  A   D R RG  +F GA+RTGR
Sbjct: 180 -KEVAKELKTVGKELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGR 238

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITH---LPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           ++G +   QNLP+         + +     +        D    +S  +R+  I   G K
Sbjct: 239 FAGRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGFK 298

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGK 433
            +VAD + IEARVLAW+AGE+W+++ F  G+D+Y ++ ++ F+V   +       R  GK
Sbjct: 299 FIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGK 358

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
           + ELALGY G   A + M                                         A
Sbjct: 359 IAELALGYGGSVGALKAMG----------------------------------------A 378

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
           ++        + +  AWR+ +  V+ LW ++ +A +Q +    ++          +    
Sbjct: 379 LDMGLTEEELQPLVDAWRKSNPMVTTLWWDVDRAVKQCVHEHISVRT------HNIVFTY 432

Query: 554 DKNNLILMLPSGRSLVYRDVG-NNRSYLN--------TTTRQLTREYTYGGKLTENIVQA 604
               LI+ LPS R L Y         Y           +T++  R  +YG K  ENI QA
Sbjct: 433 KSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQA 492

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664
           ++RDIL   M       Y IV  VHDE + ET      +   +  LM   P WA+GL L+
Sbjct: 493 IARDILLYAMQTL--KEYRIVAHVHDEAIIETDKN--VSVQSVCELMGRTPPWAEGLVLR 548

Query: 665 AEGYESKRYRK 675
           A+GYE + Y+K
Sbjct: 549 ADGYECEFYKK 559


>gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3]
 gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3]
          Length = 930

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 102/703 (14%), Positives = 195/703 (27%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  D+         HD            + 
Sbjct: 354 AFDTETDSLDYMV----------ANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +VL     +++   +   T++ +              
Sbjct: 404 AQLKPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDS 461

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++        Y   D  VT  +  
Sbjct: 462 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELDEASPYAAEDADVTLRLHN 511

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     ++             L  +   I   G  +D       +  +     +L+Q+ 
Sbjct: 512 RLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLDELEQKA 571

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL         T +T + VL       P    +  
Sbjct: 572 YEI-AEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKLILE 630

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 631 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 689

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +AS G K++  D + IE R++A ++G+Q  
Sbjct: 690 -------------------------IRQAFVASTGYKILAVDYSQIELRIMAHLSGDQAL 724

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V+   V+ +QR   K +                    G++
Sbjct: 725 LDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVN--------------FGLIYGMS 770

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 771 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 800

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   A                                +    GR L   ++ +   
Sbjct: 801 QYMEDTRSAA--------------------------SEQGFVETIFGRRLHLPEIQSRNG 834

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 835 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 885

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S + +LM S       +PL AE      +
Sbjct: 886 LVFEVEESSLSEIESKVQNLMESAAE--LKVPLVAEAGHGDNW 926


>gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter calcoaceticus PHEA-2]
          Length = 923

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 197/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRD 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  +++ +           
Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 505 YRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEG 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P A
Sbjct: 565 LENQAMEI-ADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLA 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + LVE  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDEALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTRQESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  + + +
Sbjct: 877 DELVFEADQNIADELSKQIATVMESVVK--ISVPLVVEVGQGQNW 919


>gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
 gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3]
          Length = 907

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/702 (15%), Positives = 194/702 (27%), Gaps = 163/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S           Y E   ++  +F  +          H             + 
Sbjct: 332 AFDTETTSLN---------YME-AEIVGLSFAVERGEAAYVPLAHSYPGTPAQLDRDAVL 381

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
             LK  LE+ D   +  N  ++ +VL      DI +      T++ +             
Sbjct: 382 AALKPLLEDPDKAKLGQNLKYDASVLARY---DIAMQGIAFDTMLESYVLDSTGT----- 433

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     +   K L       E       +     +        Y   D  VT  + +
Sbjct: 434 ---RHDMDSLAL-KYLGRSTTHFEDVAGKGAKQITFDKVGIEEAAAYAAEDAEVTLALHE 489

Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L  +   +   G  +D       ++ +      L++E 
Sbjct: 490 TLWPKLQETPSLASVLTDIELPLVPVLSRMERCGALLDEERLWEHSRELGQRLQALEEEA 549

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
            ++    V +    ++L   LF +  L +   T     +T + VL       P    +  
Sbjct: 550 HNVAGQ-VFNLGSPKQLGQILFEKLELPVLKKTPKGAPSTAEEVLQELALDYPLPKLLIE 608

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+      + L   +NS      T      + TGR S      QN+P  +     
Sbjct: 609 HR-GLSKLKSTYTDKLPGMINSHTGRIHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRR 667

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA+EG ++V AD + IE R++A ++ +   
Sbjct: 668 -------------------------IRQAFIAAEGYQIVAADYSQIELRIMAHLSEDPGL 702

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF    D++  T A  F V    V+ +QR   K +                    G++
Sbjct: 703 LAAFRENLDVHSATAAEVFGVPLDSVSGEQRRKAKAINF--------------GLIYGMS 748

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A  +  +                                  +R    + +++  V 
Sbjct: 749 AFGLARQLHLD------------------------------RGEAQRYIDVYFERYPGVR 778

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +          +                             +    GR L   ++     
Sbjct: 779 QYMVRTRALAHE--------------------------QGYVETLFGRRLYLPEINVRNK 812

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                     R            +Q  + DI+   M+              +++ VHDE+
Sbjct: 813 MRQQA---AERTAINAP------MQGTAADIIKMAMLAVDGWIADDGVDAKMIMQVHDEL 863

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E  ++        L  LM++    A  +PL  E      +
Sbjct: 864 VLEVAESQLDPVCDELCRLMSAAADLA--VPLLVEAGRGANW 903


>gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
 gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4]
          Length = 918

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 104/707 (14%), Positives = 215/707 (30%), Gaps = 170/707 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------M 53
           + ID ET S           Y E   ++  +F  +          HD +          +
Sbjct: 341 IAIDTETTSLN---------YME-AKLVGISFAVEAGKAAYLPLAHDYIDAPEQLDKAVV 390

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110
            + L+  LE+ ++  V  N  ++ ++      + + +     T++ +           + 
Sbjct: 391 FEKLQPLLEDENLKKVGQNLKYDISIFANA-GICL-LGVQFDTMLESYVFNSVASKHNMD 448

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +             G + I+     E       +    ++ +      Y   D  +T  
Sbjct: 449 DLALKY--------LGHKNISF----EEIAGKGVKQLTFNQISLETAAPYAAEDADITLR 496

Query: 171 IFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLD 219
           + + L     K  EL  +   I              G  +D  L    ++ +  +  +L+
Sbjct: 497 LHQHLWSRLEKLPELASVFTDIEMPLVNTLSTIERQGVLIDSMLLGQQSEELARKIDELE 556

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
            +   +      +    ++L+   F + G  +   T     +T + VL       P    
Sbjct: 557 HKAHEIAGQA-FNLSSPKQLQELFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKI 615

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   ++      + L   +N+  GR+  +     A+ TGR S      QN+P  + 
Sbjct: 616 ILEHR-SLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTE 673

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EGKK++ AD + IE R++A ++ 
Sbjct: 674 EGRR-------------------------IRHAFIAPEGKKILAADYSQIELRIMAHLSQ 708

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F+V  ++VT DQR   K +                   
Sbjct: 709 DKGLLTAFAEGKDIHKATAAEVFDVDFSEVTTDQRRRAKAVN--------------FGLI 754

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    A  +                                  +  +     + +++
Sbjct: 755 YGMSAFGLAKQLDI------------------------------PRSEAQSYIDTYFKRY 784

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +   E                                +   +    GR L    + 
Sbjct: 785 PGVLKYMEETRAIA--------------------------ADLGYVSTLFGRRLYLPAIK 818

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLT 627
           +  +          R            +Q  + DI+ + M+N              +++ 
Sbjct: 819 DRNAMRRQA---AERAAINAP------MQGTAADIIKKAMINIANWIETETDGEIIMIMQ 869

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E  +    +  + +  LM +       + L AE      +
Sbjct: 870 VHDELVFEVDEAKADSLQAKVCELMAAAAK--LDVELLAEAGIGDNW 914


>gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329]
          Length = 930

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 198/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  D+         HD            + 
Sbjct: 354 AFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL     +++   ++  T++ +              
Sbjct: 404 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMDS 461

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++        Y   D  VT  +  
Sbjct: 462 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHN 511

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     ++             L  +   I   G  +D       +  +     +L+Q+ 
Sbjct: 512 RLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKA 571

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL +   T +    T + VL       P    +  
Sbjct: 572 YEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGAPSTNEEVLQELALDYPLPKLILE 630

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 631 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 689

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 690 -------------------------IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQAL 724

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V+  QV+ +QR   K +                    G++
Sbjct: 725 LDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVN--------------FGLIYGMS 770

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 771 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 800

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   A     +     I                         GR L   ++ +   
Sbjct: 801 QYMEDTRSAA--ADKGYVETIF------------------------GRRLHLPEIKSRNG 834

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 835 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 885

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S +  LM S       +PL AE      +
Sbjct: 886 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 926


>gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451]
 gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451]
          Length = 938

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 203/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
             D ET S   +             ++  +F   +         HD +          + 
Sbjct: 362 AFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVI 411

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 412 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 469

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++   +   +Y   D  VT  + +
Sbjct: 470 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQ 519

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+++ 
Sbjct: 520 RISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKA 579

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 580 YELAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 638

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 639 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 697

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 698 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 732

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 733 LDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GLIYGMS 778

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 779 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 808

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      +                             +    GR L   ++ +   
Sbjct: 809 QYMEDTRSRAAE--------------------------LGYVETIFGRRLHLPEITSRNG 842

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 843 IRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDE 893

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S +  LM S    A  +PL AE      +
Sbjct: 894 LVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934


>gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972]
 gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972]
          Length = 932

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 101/703 (14%), Positives = 201/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F   +         HD            + 
Sbjct: 356 AFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ ++L    ++++       T++ +              
Sbjct: 406 AQLKPILEDAQQAKVGQNLKYDASILARY-DINMQGIA-HDTMLASYVYNSVGGKHDMDS 463

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++        Y   D  VT  +  
Sbjct: 464 LALRFMQHS----------CISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHH 513

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL PL  ++             L  +   I   G  ++  L    +Q +     +L+++ 
Sbjct: 514 RLLPLLEQDDKLLSVYRDIEMPLVPVLSRIERTGVLINDMLLGAQSQEIAQRLDELEKKA 573

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+T  F +  L         T +T + VL       P    +  
Sbjct: 574 FDIAGQ-EFNLSSPKQLQTIFFDQMKLPVIKKTPSGTPSTNEEVLQELALDYPLPAVILE 632

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 633 YR-GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 691

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G++  
Sbjct: 692 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKAL 726

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF+ G+D++  T A    ++  QVT +QR   K +                    G++
Sbjct: 727 LEAFQQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNF--------------GLIYGMS 772

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 773 ------------------------------AFGLAKQLGIPRGEAQAYMDTYFERYPGVM 802

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      +                             +    GR L   ++ +   
Sbjct: 803 QYMEDTRSTAAE--------------------------QGYVETLFGRRLHLPEITSRNG 836

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY---DIVLTVHDE 631
                 +   R            +Q  + DI+ + M+         G     +++ VHDE
Sbjct: 837 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDE 887

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 888 LVFEVEESALSEIESKVQKLMESAA--ALKVPLVAEAGHGDNW 928


>gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057]
 gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056]
 gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059]
 gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057]
          Length = 923

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 195/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRE 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  +++ +           
Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHISANH-GIELK-GWYFDSMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 505 YRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMED 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P  
Sbjct: 565 LENQAMEIAG-ETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLT 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + L+E  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  + K +
Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919


>gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 921

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/706 (15%), Positives = 196/706 (27%), Gaps = 169/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
               ID ET +                 ++ F+  FD H        HD           
Sbjct: 347 DHFAIDTETTNLD----------YRIAELVGFSVAFDAHDAYYVPVAHDYEGAPEQLNRE 396

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            + + +K  LEN  V  + H+  ++  +      + I    +  T++ +           
Sbjct: 397 HVLEQIKPILENEQVKKIGHHLKYDAHIFANH-GITIQ-GWYFDTMLASYVLNAAATRHG 454

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 455 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIELEVAAHYAAEDAHVT 502

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 503 YRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETMQT 562

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   L      +    +++   LF   GL     T     +T + +L       P A
Sbjct: 563 LENQATELAG-EAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEKI--EHPLA 619

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRP 332
             +  +R   ++      + LVE  + D   R    +  A + TGR S      QN+P  
Sbjct: 620 EVILEHR-GLAKLKNTYTDRLVEQSH-DSTHRVHTSYHQALTATGRLSSTDPNLQNIPIR 677

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R   IA EG+ L+ AD + IE R++A  
Sbjct: 678 TPIGR-------------------------QIRRAFIAPEGRVLLAADYSQIELRLMAHF 712

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   + AF+ G+D++  T A    +    VT DQR   K +                 
Sbjct: 713 SQDDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNF--------------G 758

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++                                       F           + Q
Sbjct: 759 LLYGMSEFGLTRQ------------------------------LGFTREESRSYIARYFQ 788

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V +      Q   +                             +    GR L   D
Sbjct: 789 RYPGVLDYMERTRQIARE--------------------------QGFVETILGRRLYTPD 822

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTV 628
           +  N   +        R             Q  + DI+   M+       K    ++L V
Sbjct: 823 ILANNKMIKQA---AERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQV 873

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E  +T        +  +M S       +P   E  + + +
Sbjct: 874 HDELVFEADETITDELSKQIAEVMQSVLD--ISVPFVVEVGQGQNW 917


>gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
 gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19]
          Length = 921

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 97/698 (13%), Positives = 193/698 (27%), Gaps = 160/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60
             D ET     L             ++  +F   ++         +      + +    A
Sbjct: 351 AFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFSPA 400

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L+N     +  N  F+  VL+   N+ +       T++            +  + E    
Sbjct: 401 LQNPKSLKIGQNIKFDILVLRKY-NVKVA-GPLFDTMIAHYLLNPELRHGMDYLAETY-- 456

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              +    +ELI                            EY   D  VT ++     P 
Sbjct: 457 LKYQTVHIEELIG---------PKGKNQLSMRNVPVEQIAEYAAEDADVTLKLKNYFAPE 507

Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L Y+   +   G  +D       +  +     KL+QE+  L   
Sbjct: 508 LKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELAGT 567

Query: 229 LVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +    +++   LF    L  +   T+    +T + VL   +   P   ++   R   
Sbjct: 568 -EFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGKLLEYR-GL 625

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     ++ L E +N       T      + TGR S      QN+P       E     
Sbjct: 626 KKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGRE----- 680

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   I          AD + IE R++A ++G+   ++AF
Sbjct: 681 --------------------IRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIEAF 720

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           ++G D++  T A+ + +   +VT D R   K                      G+++   
Sbjct: 721 QSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFG--------------IIYGISVFGL 766

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A                                     +  + +   +   + R+ E   
Sbjct: 767 AER------------------------------LGIPRSESKELIDGYFSTYPRIKEYME 796

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           E  +  ++                             +     R     D+ ++ + +  
Sbjct: 797 ESIKVAKE--------------------------KGYVETIFKRKRFLPDINSHNAVVRG 830

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q  + DI+   M+   +          ++L VHDE+    
Sbjct: 831 Y---AERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNI 881

Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              +      +    M +       +PL A+  E + +
Sbjct: 882 YKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917


>gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
 gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406]
          Length = 946

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 101/698 (14%), Positives = 199/698 (28%), Gaps = 161/698 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60
             D ET S   L          +  ++  A  F            D      +  +L+ A
Sbjct: 377 CFDTETTSLNAL----------EAELVGLAISFRAKEAYYIPFTSDQIQTQRILDLLQPA 426

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
            E + +T V  N  ++  VLK   N  I       T++            +  + E    
Sbjct: 427 FEKSSITKVGQNLKYDLLVLKKY-NFAIA-GPLFDTMLAHYLLEPEMRHGMDTLAEVY-- 482

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP- 177
            +      ++LI +            +             EY   D  +T +++K   P 
Sbjct: 483 LNYTPVSIEQLIGK---------KGAKQGTMRDVEIEAIKEYAAEDADITFQLYKFFSPL 533

Query: 178 ---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                     +  E  L  +   +   G  +D       + ++  E T +++E+      
Sbjct: 534 VKDQNLNPLFNEVEMPLSEVLADMELEGVKIDTQALSEFSSLLQTEITAVEKEIYEHAGV 593

Query: 229 LVSSSRCLEKLKTWLFLETGLHL-EDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +    ++L   LF +  L      T+T    T + VL+      P    + + R   
Sbjct: 594 Q-FNISSPKQLGEILFDKLKLDPNAKKTKTGQYATGEDVLTKLDSDHPILANILDYR-EF 651

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     ++ L   +  DGR+  +     A+ TGR S      QN+P  +   +E     
Sbjct: 652 QKLKSTYVDALPLLLGKDGRVHTSFNQAVAA-TGRLSSTNPNLQNIPIRTDRGKE----- 705

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   +A +    ++ AD + IE R++A  + ++  L AF
Sbjct: 706 --------------------IRRAFVARDNDHVILSADYSQIELRIMAAFSKDESMLNAF 745

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++ TT ++ F V    VT D R                          G++    
Sbjct: 746 RKGVDIHSTTASKVFKVPIEDVTADMRRKA--------------KMVNFGIIYGISAFGL 791

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           +  +                                       +  A+  +   V    +
Sbjct: 792 SQRLSI------------------------------PRKEAAEIITAYFTEFPAVKAYMD 821

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
               +  +                             +    GR    RD+ +    +  
Sbjct: 822 ACVNSAREVE--------------------------YVETILGRRRFLRDINSRNMTMRG 855

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET 636
                 R            +Q  + D++   M+              +VL VHDE++ + 
Sbjct: 856 F---AERNAINAP------IQGSAADMIKVAMIRIHDWMKKENLKSKMVLQVHDELLFDA 906

Query: 637 PDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
              +         + M      A  +P++      + +
Sbjct: 907 HKDEIDLLKTQVEIFMKEAI--ALDVPMEVGMGIGENW 942


>gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024]
 gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024]
          Length = 923

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 196/705 (27%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
               ID ET S                 ++ F+  FD          H            
Sbjct: 349 DHFAIDTETTSLD----------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRD 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      +++    +  +++ +           
Sbjct: 399 QILVQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELK-GWYFDSMLASYVLNAAATRHG 456

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 457 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVT 504

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D A    L+         
Sbjct: 505 YRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEG 564

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   +      +    +++   LF + G+     T     +T + VL       P A
Sbjct: 565 LENQAMEI-ADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI--EHPLA 621

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + LVE  ++D     T      + TGR S      QN+P   
Sbjct: 622 EIILEHR-GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR- 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                   + I   +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 680 ------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F     +   K + Q+
Sbjct: 762 LYGMSEFGLIRQ------------------------------LGFTRQESQNYIKQYFQR 791

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E      Q                                 +    GR L   D+
Sbjct: 792 YPGIYEYMQRTRQVA--------------------------SEQGFVETILGRRLYTPDI 825

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +    +   R             Q  + DI+   M+       K    ++L VH
Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +PL  E  + + +
Sbjct: 877 DELVFEADQNIAEELSKQIATVMESVVK--ISVPLVVEVGQGQNW 919


>gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01]
 gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03]
 gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07]
 gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22]
 gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26]
 gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32]
 gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12]
          Length = 933

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 102/710 (14%), Positives = 202/710 (28%), Gaps = 170/710 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
              +D ET     L             ++ F+              H+  +     E L 
Sbjct: 351 ICAVDTETDGLDPLA----------ANIVGFSIATAPGKACYVPLKHEGTLEAPTGEQLA 400

Query: 63  -------------NTDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARS--NGLP 106
                        +  V  + HN+ F+  +L     + +  I     T++++ S   GL 
Sbjct: 401 VDAALKLLAPLLQDDAVLKIFHNAKFDLLILD-HAGIPLSSITAVDDTMLISYSQSAGLH 459

Query: 107 S-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              +  +          M      I+                P  +       +Y   D 
Sbjct: 460 GQGMDELSA--------MHLSHTPISYDS----VTGTGRNRLPFAQVPVATATKYAAEDA 507

Query: 166 TVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
            VT  ++  L P              E+ L  +   +   G  VD A    L++  +   
Sbjct: 508 DVTLRLWHVLHPTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRAELDRLSKDFEARM 567

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTP 271
             ++ ++         +    ++L   LF E GL      +    +T   VL        
Sbjct: 568 QGMENDIYEAAGRQ-FNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTDSSVLQDLADQGH 626

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                     + ++      + L+     + R+  + Q    + TGR S      QN+P 
Sbjct: 627 DLPARILAWRQLAKLKSTYTDALLRQAGRNDRVHTSFQMAI-TSTGRLSSTDPNLQNIPV 685

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +                              +R   IA  GKKL+ AD + IE R+LA 
Sbjct: 686 RTEEGTR-------------------------IRQAFIAPPGKKLISADYSQIELRLLAD 720

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A      +AF+ G+D++  T +  FN+    +    R   K +                
Sbjct: 721 VANIPALREAFQLGQDIHARTASEVFNIPLEGMDALTRRRAKAIN--------------F 766

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++                                    +             A+ 
Sbjct: 767 GIIYGIS------------------------------AFGLGKQLGIPAGEARTYIDAYF 796

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  + +    + +                              +  ++ P GR     
Sbjct: 797 ARYPGIRDYMERMREEART--------------------------HGYVLTPFGRRCYVP 830

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGY---DI 624
            +    +          R+            Q  + DI+   M+       KAG+    +
Sbjct: 831 GIHEKSAARRQY---AERQAINAPL------QGGAADIIKRAMVHLPLALQKAGFGETRM 881

Query: 625 VLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +L VHDE++ ET +++     +++ ++M +    A  +PL  E    + +
Sbjct: 882 LLQVHDELLFETDESEAEAVAAIIKNVMEAAADLA--VPLVVETGIGQNW 929


>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518']
          Length = 924

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 109/698 (15%), Positives = 203/698 (29%), Gaps = 160/698 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHDPVMPQVLK 58
           L ID ET S            A    ++  AF ++            D      + + L 
Sbjct: 355 LAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLA 404

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
             L       V  N  ++  VL     +++P   +  T+V         P  L  +    
Sbjct: 405 PILRRAQR-KVGQNLKYDLVVLAQH-GVEVPP-PYFDTMVAHYLIAPEEPHNLDVLARQY 461

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----- 171
                +M    ELI                K     +    G Y   D  +  ++     
Sbjct: 462 --LRYQMVAITELI----------GSGRDQKSMRDVSIDEVGPYACEDTDIALQLADVLA 509

Query: 172 -----FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   +   G C+D  +   + + ++ E  +L+ ++  + 
Sbjct: 510 AELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKIYEVA 569

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L   LF + GL     T     +T + VL       P    + + R  
Sbjct: 570 GV-EFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRH- 627

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++     ++ L   ++ +     T      + TGR S      QN+P  +    E    
Sbjct: 628 LAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGRE---- 683

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R   +   G KL+ AD   IE R+LA ++G++   +AF
Sbjct: 684 ---------------------IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++  T AR F V P QVT +QR                          G++    
Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRA--------------KMVNYGIPYGIS---- 764

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                         A          + + + +++    V+    
Sbjct: 765 --------------------------AWGLAQRLRCSTREAQELIEEYQRAFPGVTRY-- 796

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            LH+  E+  + G                             GR     ++ +      +
Sbjct: 797 -LHRVVEKARQKGYVETLL-----------------------GRRRYVPNINSRNRAERS 832

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q    D++   M++             ++L VHDE+V E 
Sbjct: 833 M---AERIA------VNMPIQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDELVFEM 883

Query: 637 PDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           P  +      L    M       +G+P++ +      +
Sbjct: 884 PPEEVEPVRQLVEQEMKQALP-REGVPIEVDIGVGDNW 920


>gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1]
 gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1]
          Length = 941

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 217/702 (30%), Gaps = 162/702 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57
             L  D ET S            A +  ++  +F +         C  D      + + L
Sbjct: 368 DQLCFDTETTSVN----------AMEAELVGISFAYLSGEAYYIPCPADRAETDQILEQL 417

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   +N  +  +  N  ++  +LK   ++++   +   T++           ++  + E 
Sbjct: 418 KPVFQNEKILKIGQNIKYDLLILKNY-DVEVK-GKLYDTMLAHYLIEPEGKHSMDWLAEQ 475

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               + +     ELI +                          EY   D  +T ++ ++L
Sbjct: 476 Y--LNYQPVSITELIGK---------KGKNQGNMRDVDVDQVTEYASEDADITLQLKEKL 524

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P              E  L  +   +   G  +D      ++  ++ E  +++ ++  +
Sbjct: 525 DPFLKENLLEKLFYEVENPLINVLTEMEFEGIRIDTKSLAEMSISLEKESKEIENKVYEI 584

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    ++L   LF +  L  +   T+T    T + +LS        A  + + R
Sbjct: 585 AGVR-FNLASPKQLGDVLFEKLKLDPKAKKTKTGQYATGEEILSKLANEHEIARAILDFR 643

Query: 281 MRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L   +N   G++  T     A+ TGR S      QN+P  +    E 
Sbjct: 644 QMV-KLKSTYVDALPTMINSKTGKIHTTYNQFVAA-TGRLSSINPNLQNIPIRTERGRE- 700

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                                   +R   +   E   L+ AD + IE R++A  +G++  
Sbjct: 701 ------------------------IRKAFVPRDENHILLAADYSQIELRIMAAFSGDESM 736

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF+ G D++ TT A+ F V   +VT D R   K                      G++
Sbjct: 737 IEAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAKTANF--------------GIIYGIS 782

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               +  +                                  T  + +  A+ ++   V 
Sbjct: 783 AFGLSQRLSI------------------------------SRTEAKEIIDAYFKEFPAVK 812

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E  +   +                              +  +    GR    RD+ +  +
Sbjct: 813 EYMDRAIEKARN--------------------------DEYVETLLGRRRYLRDINSRNA 846

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632
            +        R            +Q  + D++   M++             ++L VHDE+
Sbjct: 847 TMRGF---AERNAINAP------IQGSAADLIKVAMIDVHNWMKKENLKSKMILQVHDEL 897

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V +    +       +  LM++       +P++ E      +
Sbjct: 898 VFDAHKDEVEILKKNIPELMSNAIK--MDVPVEVEVGTGDDW 937


>gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202]
 gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60]
          Length = 930

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 206/705 (29%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L+            ++  +              HD            + 
Sbjct: 354 AFDTETDSLDVLS----------ANLVGISCADAPGQACYIPLAHDYLDAPRQLDRQYVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             L+  LE+  V  +  N  ++  V+     + +       T++ +           + +
Sbjct: 404 ARLQPLLEDEGVAKIGQNLKYDIGVMARY-GITLRGVA-FDTMLESYVLNSVAGRHDMDS 461

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L  +    E            ++       EY   D  VT ++
Sbjct: 462 LAARH------------LDHKTITFEEIAGKGKGQLTFNQIPLEQAAEYAAEDADVTLQL 509

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +RL P               +  L  +   +   G  +D A+    +Q + V    L+Q
Sbjct: 510 HQRLWPTLEGESGPSHIFRDIDMPLIPVLSRMERTGVLIDSAILGQHSQELAVRLEALEQ 569

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +  S       +    ++L+  LF +  L +   T     +T + VL+          QV
Sbjct: 570 QAHSEAG-EPFNLSSTKQLQAILFEKQQLPVLKKTPGGAPSTNEEVLAELADQGYALPQV 628

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                  ++      + L + +N   GR+  +      + TGR S      QN+P  S  
Sbjct: 629 ILEYRTLAKLKSTYTDKLPQMVNPLTGRVHTSYHQAV-TATGRLSSSDPNLQNIPVRSDE 687

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G ++V AD + IE R++A ++G+
Sbjct: 688 GRR-------------------------IRQAFIAPAGSRIVAADYSQIELRIMAHLSGD 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F +    V+ DQR   K +                    
Sbjct: 723 KGLLAAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINF--------------GLIY 768

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +R    + +++ 
Sbjct: 769 GMS------------------------------AFGLARQLNIGRGEAQRYMDLYFERYP 798

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V        Q                             +   +    GR L   ++  
Sbjct: 799 GVLAYMERTRQLA--------------------------SDQGYVETLDGRRLYLPEINA 832

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
                    +   R            +Q  + DI+   M+         +    +++ VH
Sbjct: 833 RNGMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDGWLQEAQPEVRMIMQVH 883

Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P++        +  LM ++ S A  +PLK +    + +
Sbjct: 884 DELVFEVPESQVEAVVCQVRALMENSLSLA--VPLKVDIGCGENW 926


>gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1]
 gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5'
           exonuclease [Acinetobacter sp. ADP1]
          Length = 920

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 111/706 (15%), Positives = 195/706 (27%), Gaps = 169/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
               ID ET S                 ++ F+  FD          HD           
Sbjct: 346 KRFAIDTETTSLD----------YRVAEMVGFSVAFDAQDAYYVPLTHDYDNAPEQLNRE 395

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PS 107
            +   LK  LE+  V  + H+  ++  +        + +  W   T++ +          
Sbjct: 396 QILAQLKPILEDETVHKIGHHLKYDAHIFANH---SVELKGWYFDTMLASYVINSVATRH 452

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            +  V                L       E       + K  ++    +   Y   D  V
Sbjct: 453 GMDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV 500

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERT 216
           T  +++ L        EL  +   I              G  +D +    L+        
Sbjct: 501 TYRLYEVLAQKLKSAPELENILYNIEMPVARILTGMEEAGIKLDHSFLGQLSVEFTETIL 560

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272
            L+ +   L      +    +++   LF + GL     T     +T + +L       P 
Sbjct: 561 GLENQAIELAG-ESFNVSSPKQVGEILFDKMGLKGGKKTATGQHSTSESILEKV--EHPI 617

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
           A  +  +R   S+      + LVE  +++     T      + TGR S      QN+P  
Sbjct: 618 AEVILEHR-TLSKLKNTYTDRLVEQSHNETHRVHTSYHQALTATGRLSSSDPNLQNIPIR 676

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R   IA EG+ L+ AD + IE R++A  
Sbjct: 677 GEIGR-------------------------QIRKAFIAPEGRILLAADYSQIELRLMAHF 711

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF+ G+D++  T A   N+   +VT DQR   K +                 
Sbjct: 712 SQDEALLDAFQHGQDVHRRTAAEVLNIPLEEVTNDQRRQAKAVNF--------------G 757

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++                                       F     +   K +  
Sbjct: 758 LLYGMSEFGLIRQ------------------------------LGFTREESQNYIKQYFH 787

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  + E      Q   +                             +    GR L   D
Sbjct: 788 RYPGIYEYMQRTRQVALE--------------------------QGFVETILGRRLYTPD 821

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTV 628
           +      +    +   R             Q  + DI+   M+   K        ++L V
Sbjct: 822 IDARNMMVR---KGAERAAINAPL------QGSAADIIKLAMIEVDKMLPKDQAKLLLQV 872

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E         +  L   M S       +PL  E  +   +
Sbjct: 873 HDELVFEVDADLADELAPKLAETMQSVV--NISVPLLVEVGQGLNW 916


>gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9]
 gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9]
          Length = 932

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 198/703 (28%), Gaps = 166/703 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQ 55
            D ET S   +             ++  +F             H             +  
Sbjct: 359 FDTETDSLDPM----------QARIVGVSFAVTPGEAAYVPLAHVAPGVEPQLDRDRVLA 408

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113
            LK  LEN     V  N+ ++R VL     + +       T+++           + A+ 
Sbjct: 409 QLKPWLENPAAAKVLQNANYDRHVLANH-GIRLAGVA-DDTMLMDYVLASHERHNMDAMA 466

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E             EL     K E       R              Y   D  VT  +  
Sbjct: 467 ER------------ELGLATIKYEDICGKGARQIGFAEVDLDTATRYAAEDADVTLRLRD 514

Query: 174 RLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            L               E     +   +   G  +D A     +Q++  E   ++ E+  
Sbjct: 515 VLAGKLDGARDTLYSSIELPTAAVLFAMERTGVLIDRAELARQSQVLGEEMLAIETEVYE 574

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLE------DLTETTCQRVLSSNKKLTPQAIQVFN 278
           L      +    ++L   LF +  +  +          +T + VL    +  P    +  
Sbjct: 575 LAGQP-FNLNSPKQLSDILFNKLAIDTKGVKKTASGGYSTDESVLEKLAEDYPLPKALLR 633

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L   +N D     T     +  TGR +      QN+P  +     
Sbjct: 634 YR-GLAKLKSTYTDKLPAMINPDTGRVHTHYSQASVVTGRLASSDPNLQNIPIRTDEGRR 692

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    VR   +A  G  +V AD + IE R++A ++G+   
Sbjct: 693 -------------------------VREAFVAPAGSCIVSADYSQIELRIMAHLSGDAGL 727

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G D++  T +  F V    V+ +QR   K +                    G++
Sbjct: 728 IAAFREGRDIHRATASEVFGVPLEAVSAEQRRYAKTINF--------------GLIYGMS 773

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A  ++ ++                               A +   + +  ++  V 
Sbjct: 774 AFGLAKSLEIDN------------------------------KAAQTFIERYFARYPGVQ 803

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +      +A  +                             +    GR L   ++ ++ +
Sbjct: 804 DYMQRTREAARE--------------------------QGWVETVFGRRLYLPEIRSSNA 837

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                  +               +Q  + D++   M+         +    +++ VHDE+
Sbjct: 838 ARRAGAERA---------AINAPMQGTAADLIKLAMIRVADWLQREQLASRLIMQVHDEL 888

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           V E P+ +     + L   M +    A  +PL AE      + 
Sbjct: 889 VLEVPEAERERVCAALPQEMAAVAGLA--VPLVAEVGSGANWG 929


>gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
 gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307]
          Length = 941

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 99/715 (13%), Positives = 194/715 (27%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET S  ++             ++  +              H             
Sbjct: 355 YVAVDTETTSLNEMR----------AELVGVSLCVTAGEACYIPLTHKSGAADDLFGDDA 404

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                        +LK  LE+  +  +  N  ++  + K    + I +     T++++ +
Sbjct: 405 LAEGQMDFEECLAILKPMLEDDSILKIGQNMKYDAKIFKR---VGIDVDPIDDTMLMSYA 461

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  + E           G   I    K         +    +R        
Sbjct: 462 MNAGLHRHGMDVLSEQY--------LGHTPIP--IKPLLGAGKSAKT--FNRVPVEDAVR 509

Query: 160 YCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  +++  +P              E+ L  +   +   G  VD      ++ 
Sbjct: 510 YAAEDADITLRLWEVFKPQLHRKQVTSVYETMERPLVPVLAKMEMHGIKVDRDTLSRMSN 569

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSS 265
               +   L+ EL  L  G   +     ++   LF + GL            T   VL  
Sbjct: 570 AFAQKMAGLEDELYELAGGK-FNVGSPAQVGEILFDQMGLEGGKKGKNGKYATGADVLED 628

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    +V + R   S+      + L   +N++     T   +  + TGR S     
Sbjct: 629 LATEHDLPGRVLDWRQ-LSKLKSTYTDALQTHINAETGRVHTSYSITGANTGRLSSTDPN 687

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +    +                         +R   IA EGK LV  D + IE
Sbjct: 688 LQNIPIRTDEGRK-------------------------IREAFIADEGKVLVALDYSQIE 722

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AF  G D++  T +  FNV   ++T D R   K +          
Sbjct: 723 LRILAHVANIDALKQAFRDGHDIHAMTASEMFNVPLDEMTPDVRRQAKAINF-------- 774

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 775 ------GVIYGIS------------------------------GFGLARNLRIPRAEAQG 798

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    ++     ++                          +  +    G
Sbjct: 799 FIDRYFERFPGIRTYMDDTVAFAKE--------------------------HNRVETLFG 832

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621
           R +   ++               R            +Q  + D++   M+    A     
Sbjct: 833 RKIHTPEINAK----GPGAGFAKRAAINAP------IQGTAADVIRRAMIRMDDAIAHLP 882

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE+V E       +  +    +M +   P     +PL  +      +
Sbjct: 883 AKMLLQVHDELVFEVDKDAAEDLIAAARDVMENAANPVVKFDVPLVVDAGIGATW 937


>gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
 gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037]
          Length = 931

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 197/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  D+         HD            + 
Sbjct: 355 AFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL     +++   ++  T++ +              
Sbjct: 405 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMDS 462

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++        Y   D  VT  +  
Sbjct: 463 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHN 512

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     ++             L  +   I   G  +D       +  +     +L+Q+ 
Sbjct: 513 RLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKA 572

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL         T +T + VL       P    +  
Sbjct: 573 YEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLHELALDYPLPKLILE 631

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 632 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 690

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 691 -------------------------IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQAL 725

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V+  QV+ +QR   K +                    G++
Sbjct: 726 LDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVN--------------FGLIYGMS 771

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 772 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 801

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   A     +     I                         GR L   ++ +   
Sbjct: 802 QYMEDTRSAA--ADKGYVETIF------------------------GRRLHLPEIKSRNG 835

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 836 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 886

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S +  LM S       +PL AE      +
Sbjct: 887 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 927


>gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
 gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2]
          Length = 936

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/706 (15%), Positives = 202/706 (28%), Gaps = 167/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
             + +D ET S  ++             ++  +              H            
Sbjct: 360 DLVALDTETDSLDEMR----------AQIVGISLSVQPGAAAYIPLQHSGPDAPAQLPIG 409

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109
            +   LK  LE+     +  +  ++R V      +++  +    T++ +    +  P  L
Sbjct: 410 QVLARLKPWLEDGRRHKLGQHIKYDRHVFANH-GIEVQGY-VHDTMLQSYVLEVHKPHNL 467

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++ E           G++ I+     E          P  +        Y   D  +T 
Sbjct: 468 GSLAERH--------TGRKGISY----EDLCGKGAHQLPFAQVPVDKAAAYSCEDADLTL 515

Query: 170 EIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            + + L P       L ++             I   G  +D       +  +     +L 
Sbjct: 516 NVHQTLWPQLQAHDRLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRIEQLQ 575

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
            +  +L      +    ++L    F + G+ +   T     +T + VL    +  P   +
Sbjct: 576 ADAYALAGQP-FNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAENYPLPAK 634

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R    +      + L +      GR+        A  TGR S      QN+P  + 
Sbjct: 635 LLEHR-GLIKLKGTYTDKLTQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTP 692

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR   +A  G  +  AD + IE R++A ++ 
Sbjct: 693 EGRR-------------------------VREAFVAPAGCVIASADYSQIELRIMAHLSD 727

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  L AF  G D++  T A  F VA  QV+ +QR   KV+   L Y  G          
Sbjct: 728 DQALLHAFHAGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMG-----SFGLA 782

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L L   A     +   + +   + +    +     +   +   G          R   
Sbjct: 783 KNLGLENKAAAAYIDRYFQRYPGVKQYMDQTRAAAKSNGYVETVFGR---------RLYL 833

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             ++                                            P+G        G
Sbjct: 834 PEINS-------------------------------------------PNGPRRS----G 846

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
             RS +N                    +Q  + D++   M+   K          +++ V
Sbjct: 847 AERSAINAP------------------MQGTAADLIKMAMVAVQKELDAQQPAIRMIMQV 888

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E P          +  LM    +    +PL AE      +
Sbjct: 889 HDELVFELPGNAVDWLRTHVPRLMAEVAT--LKVPLLAEVGVGPNW 932


>gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223]
 gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223]
          Length = 890

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 105/703 (14%), Positives = 205/703 (29%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
             D ET S   +             ++  +F   +         HD +          + 
Sbjct: 314 AFDTETDSLDYMV----------ANLVGMSFAVAEGEAAYIPVAHDYLDAPQQLDRAWVI 363

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 364 AQLKPLLEDESKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 421

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++   +   +Y   D  VT  + +
Sbjct: 422 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQ 471

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           R+ PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q+ 
Sbjct: 472 RISPLIEQDSKLAQVYSEIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEQKA 531

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L+T LF +  L         T +T + VL       P    +  
Sbjct: 532 YELAGQS-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIE 590

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N +     T      + TGR S      QN+P  +     
Sbjct: 591 YR-GLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR 649

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 650 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 684

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V   QV+ +QR   K +                    G++
Sbjct: 685 LDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GLIYGMS 730

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 731 ------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVM 760

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      +                             +    GR L   ++ +  +
Sbjct: 761 QYMEDTRSRAAE--------------------------LGYVETIFGRRLHLPEITSRNA 794

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+   +           +++ VHDE
Sbjct: 795 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDE 845

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S +  LM S    A  +PL AE      +
Sbjct: 846 LVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 886


>gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
 gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003]
          Length = 950

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 96/720 (13%), Positives = 200/720 (27%), Gaps = 181/720 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L +D ET S  ++             ++  +              H             
Sbjct: 359 VLAVDTETTSLDEM----------QAELVGVSLSTGPGRACYIPLGHTTGGDDLFGTTAL 408

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                       +LK  LE+  +  +  N  ++  +        I +  +  T++++ + 
Sbjct: 409 APGQMPMDEALAILKPVLEDESLLKIGQNMKYDWKIFARH---GIRVAPFDDTMLMSYAM 465

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   + A+ E       +    KELI                    +        Y
Sbjct: 466 FSGLHGHGMDALSEEY--LRHRPIPIKELI----------GTGKAQITFDKVPLDKATAY 513

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  ++   +P   +          E+ L  +   +   G  VD  +   ++ +
Sbjct: 514 AAEDAEITYRLWAAFKPQLHRAQVTTVYETLERPLVPVLAEMEMAGVKVDPTVLARMSNV 573

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
                  L++E+++L      +    ++L   LF + G+   +  +T    T   VL   
Sbjct: 574 FAQRMAGLEEEIQALAGQS-FNVGSPKQLGEILFDKLGVPGGEKGKTGAYATGADVLEDI 632

Query: 267 --KKLTPQAIQV---FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWS 320
              +   QA  +     +  + ++      + L   +N D GR+  +    GA+ TGR +
Sbjct: 633 TTMEDHKQAADLAAKVLDWRQIAKLKSTYTDALQTHVNPDTGRVHTSYSIAGAN-TGRLA 691

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QN+P  S                              +R   +A+ G ++V  D
Sbjct: 692 STDPNLQNIPVRSDEGRR-------------------------IREAFVATPGHRIVSLD 726

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +A       AF  G D++  T +  F V    +    R   K +     
Sbjct: 727 YSQIELRILAHVANLPEMKAAFARGIDIHAMTASEMFGVPVEGMDPMVRRRAKAINF--- 783

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G++                                  A       
Sbjct: 784 -----------GVIYGIS------------------------------GFGLARNLRIPR 802

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
           +  +     + ++   +    +E     +                           N  +
Sbjct: 803 SEAQGFIDRYFERFPGIRAYMDETVAFAK--------------------------ANGFV 836

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616
               GR +   ++               R            +Q  + DI+   M+     
Sbjct: 837 QTLFGRKIHTPEINAK----GPGAGFAKRAAINAP------IQGAAADIIRRAMIRMPAA 886

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
                  ++L VHDE++ E  ++      +    +M      A    +PL  +  +   +
Sbjct: 887 IAHLPAKMLLQVHDELIFEVAESAVDPLIATARAVMEGAADPAVRLSVPLVVDAGQGASW 946


>gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
 gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503]
          Length = 921

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 96/698 (13%), Positives = 193/698 (27%), Gaps = 160/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60
             D ET     L             ++  +F   ++         +      + +    A
Sbjct: 351 AFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFSPA 400

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L+N     +  N  F+  VL+   N+ +       T++            +  + E    
Sbjct: 401 LQNPKSLKIGQNIKFDILVLRKY-NVKVA-GPLFDTMIAHYLLNPELRHGMDYLAETY-- 456

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              +    +ELI                            EY   D  +T ++     P 
Sbjct: 457 LKYQTVHIEELIG---------PKGKNQLSMRNVPVEQIAEYAAEDADITLKLKNYFAPE 507

Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L Y+   +   G  +D       +  +     KL+QE+  L   
Sbjct: 508 LKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELAGT 567

Query: 229 LVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +    +++   LF    L  +   T+    +T + VL   +   P   ++   R   
Sbjct: 568 -EFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGKLLEYR-GL 625

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     ++ L E +N       T      + TGR S      QN+P       E     
Sbjct: 626 KKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGRE----- 680

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   I          AD + IE R++A ++G+   ++AF
Sbjct: 681 --------------------IRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIEAF 720

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           ++G D++  T A+ + +   +VT D R   K                      G+++   
Sbjct: 721 QSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFG--------------IIYGISVFGL 766

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A                                     +  + +   +   + R+ E   
Sbjct: 767 AER------------------------------LGIPRSESKELIDGYFSTYPRIKEYME 796

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           E  +  ++                             +     R     D+ ++ + +  
Sbjct: 797 ESIKVAKE--------------------------KGYVETIFKRKRFLSDINSHNAVVRG 830

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q  + DI+   M+   +          ++L VHDE+    
Sbjct: 831 Y---AERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNV 881

Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              +      +    M +       +PL A+  E + +
Sbjct: 882 YKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917


>gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 932

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 101/703 (14%), Positives = 200/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F   +         HD              
Sbjct: 356 AFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWAL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ ++L    ++++       T++ +              
Sbjct: 406 AQLKPILEDAQQAKVGQNLKYDASILARY-DINMQGIA-HDTMLASYVYNSVGGKHDMDS 463

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++        Y   D  VT  +  
Sbjct: 464 LALRFMQHS----------CISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHH 513

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL PL  ++             L  +   I   G  ++  L    +Q +     +L+++ 
Sbjct: 514 RLLPLLEQDDKLLSVYRDIEMPLVPVLSRIERTGVLINDMLLGAQSQEIAQRLDELEKKA 573

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+T  F +  L         T +T + VL       P    +  
Sbjct: 574 FDIAGQ-EFNLSSPKQLQTIFFDQMKLPVIKKTPSGTPSTNEEVLQELALDYPLPAVILE 632

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 633 YR-GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 691

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G++  
Sbjct: 692 -------------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKAL 726

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF+ G+D++  T A    ++  QVT +QR   K +                    G++
Sbjct: 727 LEAFQQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNF--------------GLIYGMS 772

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 773 ------------------------------AFGLAKQLGIPRGEAQAYMDTYFERYPGVM 802

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +      +                             +    GR L   ++ +   
Sbjct: 803 QYMEDTRSTAAE--------------------------QGYVETLFGRRLHLPEITSRNG 836

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY---DIVLTVHDE 631
                 +   R            +Q  + DI+ + M+         G     +++ VHDE
Sbjct: 837 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDE 887

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  ++        +  LM S    A  +PL AE      +
Sbjct: 888 LVFEVEESALSEIESKVQKLMESAA--ALKVPLVAEAGHGDNW 928


>gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 922

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 106/705 (15%), Positives = 198/705 (28%), Gaps = 166/705 (23%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVL 57
            ET              A+   ++  +F    +        H             + + L
Sbjct: 341 TETNGGD----------AQHSQLVGLSFAVAPYEAAYIPLTHSYMGVPEQLDRDTVLKAL 390

Query: 58  KEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALK 110
           K  LEN +   V  ++ FE  +L  C         + +       T++ +      +   
Sbjct: 391 KPLLENPNKLKVGQHAKFETNILANCAIGGDQNNGILVQGIA-FDTMLESYVLDSTAT-- 447

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
                 +     +   K L       +       +     + +  L G Y   D  VT  
Sbjct: 448 ------RHDMDSLAL-KYLGQSKTDFQDIAGKGVKQLTFDQISLELAGPYAAEDADVTFR 500

Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L+                E  L  +   I  +G  VD  L    +  +  +   L+
Sbjct: 501 LHQALQEKLAATPSLGTVLNDIEMPLMPVLARIERQGALVDANLLGVQSVELGEKLVALE 560

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           +E  ++      +    ++L   L+ + GL +   T     +T + VL+   +      +
Sbjct: 561 REAFAIAG-EEFNLGSPKQLGVILYEKLGLPVLSKTAKGQASTAEAVLAELAEQDYPLPK 619

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           V       S+      + L E +NS      T      + TGR S      QN+P  +  
Sbjct: 620 VLMQYRSLSKLKSTYTDRLPEQINSRTGRVHTNYQQAVAATGRLSSIDPNLQNIPIRTSE 679

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A +G KL+ AD + IE R++A +A +
Sbjct: 680 GRR-------------------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKD 714

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF    D++  T A  F V    VT DQR   K +                    
Sbjct: 715 EGLLYAFRHNLDVHRATAAEVFGVELEAVTLDQRRSAKAINF--------------GLIY 760

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    A  +                                     +     +  ++ 
Sbjct: 761 GMSAFGLAKQI------------------------------GVDRKQSQAYIDRYFARYP 790

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V            +                             +    GR L   D+  
Sbjct: 791 GVLAYMERTRAQAAE--------------------------QGFVETIFGRRLYLPDINA 824

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629
               L    +   R            +Q  + DI+ + M+   +          ++L VH
Sbjct: 825 KNPALR---KGAERTAINAP------MQGTAADIIKKAMVAVDRWLTTSGLDAKVILQVH 875

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +         +   M++  +    +PL  E      +
Sbjct: 876 DELVLEVREDLVDQVRDEIRQHMSAAAT--LDVPLLVEVGVGNNW 918


>gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
 gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476]
          Length = 968

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 103/713 (14%), Positives = 213/713 (29%), Gaps = 174/713 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK------ 58
             D ET S   +             ++ F+              H      +LK      
Sbjct: 382 AFDTETTSLDPM----------QAKLVGFSLALQPGKAAYIPLEHFEGKEDLLKGGRIAS 431

Query: 59  ------------EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-- 104
                         LE++ V  +  N  ++  V+K     DI I  +  T++L+ +    
Sbjct: 432 QIETRKALALLKPLLEDSAVLKIGQNIKYDWLVVKQY---DIVIRSFDDTMLLSYALDAG 488

Query: 105 -LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            L   +  + E       K    K+L               +     +   +    Y   
Sbjct: 489 ALTHNMDDLSER--WLEHKPIAYKDLTHN----------GKKITSFAQVDLKQATLYAAE 536

Query: 164 DVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           D  +T  +++ L+P              ++ L  +   + +RG  VD  +   L+  +  
Sbjct: 537 DADITLRLWQVLKPQLVARGMTKIYERLDRPLVEVLARMEERGILVDRQILLRLSGELAQ 596

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL 269
               L++E+         +    ++L   LF + GL     T+    +T  + L      
Sbjct: 597 AALILEEEIYKQ-ADEKFNLASPKQLGDILFDKMGLPGGAKTKGGQWSTSAQTLEELSAE 655

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                +      + ++      + L   +        T   L  + TGR S      QN+
Sbjct: 656 GHTLPRKIIEWRQLAKLKSTYADALPSYILPKTGRVHTNYSLAITSTGRLSSSEPNLQNI 715

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +    +                         +R+  IA +G  L+ AD + IE R+L
Sbjct: 716 PVRTAEGRK-------------------------IRTAFIAPKGHVLLSADYSQIELRIL 750

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A  +   +AF  G D++  T ++ F VA   +  D R   K +              
Sbjct: 751 AHIADIKALKEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAIN------------- 797

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                 G++                                  A +         R  + 
Sbjct: 798 -FGIIYGIS------------------------------AFGLANQLGISRQEAGRYIQL 826

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           + ++   + +   +      +                          N  +    GR + 
Sbjct: 827 YFERFPGIKDYMEKTKSFARE--------------------------NGYVETIFGRRIH 860

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
           Y ++      + +      R            +Q  + DI+   M+    A         
Sbjct: 861 YPEIKAKNVKIRSL---NERAAINAP------IQGSAADIIRRAMIQMEDALKEENLSAK 911

Query: 624 IVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
           ++L VHDE++ E P+ + +   +++  +M +   P  +  +PL+ +   ++ +
Sbjct: 912 MLLQVHDELIFEVPEEESKKTMAVVKDVMENATMPVLSLSVPLEVKVMTAQNW 964


>gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 933

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 100/705 (14%), Positives = 186/705 (26%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   L             +I  +   +          H               
Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHAL 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  V  V  +  ++  V++    +++  +    TL+ +           + +
Sbjct: 408 AQLAPLLTDPAVRKVGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDMDS 465

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +  P  + +      Y   D  +T  +
Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLDDATRYAAEDADITLRL 513

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G CVD A     +  +        Q
Sbjct: 514 HHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 574 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIADQHELPRVI 632

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   S+      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 633 LEYR-GLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 691 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 725

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AF +G D++  T A  F      V+ D+R   K +                    
Sbjct: 726 PGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------GLMY 771

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     +  ++ 
Sbjct: 772 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 801

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +      Q                                 +    GR L    +  
Sbjct: 802 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 833

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
             +          R            +Q  + DI+   M+              ++L VH
Sbjct: 834 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMILQVH 886

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E          S +   M S       +PL  +      +
Sbjct: 887 DELVFEADVDFVDTLLSEVTTRMASAAE--LRVPLVVDSGVGDDW 929


>gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
 gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177']
 gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334]
 gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154]
          Length = 902

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/704 (15%), Positives = 200/704 (28%), Gaps = 161/704 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET     +             ++  +F    H        HD           
Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            + + LK  LE+ + TI+  N  ++  VL     L I   +   TL+ +      S    
Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIR-AKTYDTLLASYVLNSSSTRHD 431

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +              K L     K E       +    +         Y   D  VT ++
Sbjct: 432 L---------NTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDADVTLQL 482

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             +L PL              E  L  +   +  RG  VD A+    +  +      L+Q
Sbjct: 483 HHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELGGRIALLEQ 542

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+T L+ E  L +   T     +T + VL       P    +
Sbjct: 543 QAYKLAG-REFNLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDYPLPKVI 601

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   ++      + L   ++   R   T      + TGR S      QN+P  +   
Sbjct: 602 LEHR-SLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIPIRTEEG 660

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +                         +R   IA  G ++V AD + +E R++A ++ + 
Sbjct: 661 RK-------------------------IRRAFIAPPGFQMVAADYSQVELRIIAHISKDP 695

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +KAF+   D++  T A  F V   QVT +QR   K +                    G
Sbjct: 696 SLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------GLLYG 741

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                    +        +     + +++ +
Sbjct: 742 MSSFGL------------------------------GRQLGIGRDLAQEYIDIYFKRYPK 771

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E   ++                                   +    GR +   D+  +
Sbjct: 772 VHEYMQKIRIVAFT--------------------------QGYVETLFGRRVYLPDIHAS 805

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
                    +               +Q  + DI+   M+  +           +++ VHD
Sbjct: 806 NMQRRRAAER---------AAINAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHD 856

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E  + D       +   M      A  +PL  +      +
Sbjct: 857 ELVFEMAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898


>gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1]
 gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1]
          Length = 947

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 104/705 (14%), Positives = 197/705 (27%), Gaps = 167/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S  ++             ++  +   +          H             + 
Sbjct: 374 ALDTETTSLDEMR----------AEIVGISLSVEPGAAAYIPLRHAGPDAPEQLPADEVL 423

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
           Q LK  LE+     +  +  ++R V      +++  +    T++ +    +  P  L ++
Sbjct: 424 QRLKPWLEDAARPKLGQHVKYDRHVFANA-GIEVHGY-VHDTMLQSYVLEVHRPHGLASL 481

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                                   E          P  +        Y   D   T ++ 
Sbjct: 482 ALRH------------TNRTGISYEDLCGKGAHQIPFAQVPVDKAAAYACEDADQTLDVH 529

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           + L P              E         I   G  +D A     +  +     +L+QE 
Sbjct: 530 RVLWPQLQANDGLRGVYELEIATSEALFRIERNGVLIDAATLARQSNDLGQRIVQLEQEA 589

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L    F + G+ +   T     +T + VL    +  P   ++  
Sbjct: 590 YDIAGQP-FNLASPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 648

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L +      GR+        A  TGR S      QN+P  +    
Sbjct: 649 HR-SLSKLKGTYTDKLAQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTPEGR 706

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   IA+ G  +  AD + IE R++A ++G++ 
Sbjct: 707 R-------------------------VREAFIAAPGHVIASADYSQIELRIMAHLSGDES 741

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L+AF  G D++  T +  FNV   QV+ +QR                          G+
Sbjct: 742 LLRAFHEGRDVHRATASEVFNVELEQVSSEQRRYA--------------KVINFGLIYGM 787

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A        A       + Q++  V
Sbjct: 788 SSFGL------------------------------AKNLGIETKAAAAYIDRYFQRYPGV 817

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
               +E  +                              +  +    GR L   D+    
Sbjct: 818 KRYMDETVEFARD--------------------------HGYVETVFGRRLYLVDI---N 848

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
                  +   R+           +Q  + D++ + M+              +++ VHDE
Sbjct: 849 GGSGPRKKAAERQAINAP------MQGTAADLIKKAMVAVQAELDARQSEVRVIMQVHDE 902

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +V E P+ +       +  LM         +PL AE      + K
Sbjct: 903 LVFELPEGESDWVRTEIPRLMAGVAD--LKVPLLAEVGLGPNWDK 945


>gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
 gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996]
          Length = 933

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/707 (16%), Positives = 210/707 (29%), Gaps = 166/707 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 354 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 404 DVLGRLKPHLENPVLKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 462 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIEQATEYAAQDADFAL 509

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 510 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 569

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +    L  +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 570 EAYAAAGQL-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 628

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 629 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 686

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 687 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 721

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F +AP  V+ +QR   K +                  
Sbjct: 722 GDKTLIAAFQNGEDVHCRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGL 767

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+     A  +  ++                                 +     +  +
Sbjct: 768 IYGMGQYGLAKSLGIDNLS------------------------------AKTFIDRYFAR 797

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V+E      +                                 +    GR L   D+
Sbjct: 798 YPGVAEYMQRTKEQA--------------------------AAQGFVETLFGRRLYLPDI 831

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
            N  +          R            +Q  + D++   M++ ++          +++ 
Sbjct: 832 RNKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQ 882

Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E P+++       L  LM         +PL AE    + +
Sbjct: 883 VHDELVLEVPESELDLVKTNLPELMADVGKGLLNVPLVAEVGVGENW 929


>gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
 gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25]
          Length = 607

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 95/716 (13%), Positives = 197/716 (27%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            +  D ET S  ++             ++  +              H             
Sbjct: 21  YVAFDTETTSLDEM----------QAELVGVSLALVPGRAAYIPLGHRMAAGDDLFADNR 70

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                    V+   L+  LE+  V  +  N  ++  ++       + +     T++L+ +
Sbjct: 71  LTEGQLPLEVVLNALRPVLEDPAVLKIGQNIKYDVKIMARY---GVHLAPVDDTMLLSYA 127

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  + E     + +    KELI                             
Sbjct: 128 LHAGLHNHGMDELSERY--LNHRPIPIKELI----------GSGKSAVTFDHVPVEKAVA 175

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  +++  +P   +          E+ L  +   +   G  VD      ++ 
Sbjct: 176 YAAEDADITLRLWQHFKPQLPQSRVTTVYETLERPLIPVLTRMEMAGVQVDRDTLSRMSN 235

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265
               +  +L++E+ +       +    ++L   LF E G       +     T   VL  
Sbjct: 236 AFAQKMVQLEEEIHAAAG-RSFNVGSPKQLGEILFDEMGFQGGVKGKNGAWGTGADVLED 294

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVF 324
                     + + R   ++      + L + +N D GR+  +    GA+ TGR +    
Sbjct: 295 LATEHALPGLILDWRQ-VAKLKSTYTDALQDHINPDSGRVHTSYSIAGAN-TGRLASTDP 352

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  +                              +R   +A  GK LV  D + I
Sbjct: 353 NLQNIPVRTEEGRR-------------------------IRGAFVAPAGKVLVSLDYSQI 387

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA +A      +AF+ G D++  T +  FNV   Q+T + R   K +         
Sbjct: 388 ELRILAQIAQIDALKEAFQQGLDIHAATASEMFNVPLDQMTPEIRRQAKAIN-------- 439

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G++                                  A          +
Sbjct: 440 ------FGVIYGIS------------------------------AFGLARNLRIPRDRAQ 463

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                + ++   +    ++     ++                          N  +    
Sbjct: 464 GFIDRYFERFPGIRAYMDQTIAFAKE--------------------------NGHVRTLF 497

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KA 620
           GR +   ++               R            +Q  + DI+   M+         
Sbjct: 498 GRRINTPEINAK----GPHAGFARRAAINAP------IQGTAADIIRRAMIQMDPAIAHL 547

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWA--KGLPLKAEGYESKRY 673
              ++L VHDE++ E  +      + +   +M      A    + L  +    + +
Sbjct: 548 PARMLLQVHDELLFEVEENAADELTAIAKRIMEGAADPAVHLDIKLVVDAGRGQNW 603


>gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419]
 gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419]
          Length = 1004

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 103/702 (14%), Positives = 207/702 (29%), Gaps = 173/702 (24%)

Query: 25   AEDVCVILFAFGFDDH---------PVELWDCVH-------------DPVMPQV-----L 57
            A    ++ F+    D+                 H             D  +P       L
Sbjct: 419  AMRADLVGFSLAIADYANDPSGSRIRAAYVPLAHKNGTGDLLGGGHIDNQIPAREALSRL 478

Query: 58   KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
            KE LE+  +  VA N  +   V+K      + +  +  T++++           ++++ E
Sbjct: 479  KELLEDPSILKVAQNLKYGYLVMKRH---GVTMQGFDDTMLISYVLDAGNGAHGMESLAE 535

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                       G   IA              +             Y   D  +   ++  
Sbjct: 536  RW--------LGHTPIASKG----ITGSGRSSLTIDFVDIDKAAAYSAEDADIALRLWHV 583

Query: 175  LEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            L+P  +            + L  +   + +RG  VD  +   L+  +      L+ E+  
Sbjct: 584  LKPRLTARGLTRVYERLERPLISVLAGMEERGIPVDRQILSRLSGELAQGAAALEDEIYR 643

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280
            L      +    ++L   LF + GL     T+    +T  +VL           +   + 
Sbjct: 644  LAG-ETFTIGSPKQLGDILFGKLGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDW 702

Query: 281  MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             + ++      + L   ++ + +   T   L A+ TGR S      QN+P  +    +  
Sbjct: 703  RQLTKLKSTYTDALPGFVHPETKRVHTCFALAATTTGRLSSSDPNLQNIPIRTGEGRK-- 760

Query: 341  QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                   +R+  +A+ G KLV AD + IE RVLA +A      +
Sbjct: 761  -----------------------IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQ 797

Query: 401  AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            AF  G D++  T +  F V    +  + R   K +   +                G++  
Sbjct: 798  AFADGVDIHAMTASEMFGVPVDGMPGEIRRRAKAINFGII--------------YGISAF 843

Query: 461  TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
              A+ +                                  +      K + ++   + + 
Sbjct: 844  GLANQLSIE------------------------------RSEAGDYIKRYFERFPGIRDY 873

Query: 521  WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                     +                          N  +    GR   Y D+ ++   +
Sbjct: 874  MENTKTFARE--------------------------NGYVETIFGRRAHYPDIRSSNPSM 907

Query: 581  NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634
                    R            +Q  + DI+   M+         K    ++L VHDE++ 
Sbjct: 908  R---AFNERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIF 958

Query: 635  ETPDTDEF-NASMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673
            E  + +      ++  +M +    A    +PLK +   +  +
Sbjct: 959  EVEEGEIERTIPVIVSVMENAAMPALDMRVPLKVDARAAHNW 1000


>gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
 gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366]
          Length = 939

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 101/700 (14%), Positives = 202/700 (28%), Gaps = 162/700 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKE 59
           +  D ET              A    ++  +F              +      + +  + 
Sbjct: 368 ISFDTETTGTD----------ANLAELVGLSFSIKPGEGYYIPVPAEMEAAQQIVEEFRP 417

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117
            LEN ++  +  N  ++  +LK    + +   R   T++            +  + E   
Sbjct: 418 VLENENIVKIGQNIKYDMLILKWY-GISVK-GRLFDTMLAHYLIDPDTRHNMDVLSE--N 473

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +        LI                            +Y   D  +T ++    EP
Sbjct: 474 YLNYSPISITTLIG---------PKGKSQGTMRDVPVEKVVDYAAEDADITLQLANVFEP 524

Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           L             E  L Y+   I   G  +D+      ++ ++++  K +Q +     
Sbjct: 525 LLKQLNAEKLATEVENPLIYVLADIEKEGVRIDMDTLINYSKELELDIRKFEQSVYDKCG 584

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    ++L   LF +  L  +   T+T    T + VL +    +     + + R  
Sbjct: 585 IK-FNLASPKQLGEVLFDKLQLDPKAKKTKTGQYQTGEDVLLALAHKSDIVQDILDFRQ- 642

Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             +     ++ L   +N   GR+  +     A+ TGR S      QN+P  +    E   
Sbjct: 643 LQKLKSTYVDALPLLVNPKTGRVHTSFNQAVAA-TGRLSSNNPNLQNIPIRTERGRE--- 698

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   I   E   L+ AD + IE R++A ++ E+  L 
Sbjct: 699 ----------------------VRKAFIPRDENHILLSADYSQIELRIIADISKEENMLD 736

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ G D++  T AR + +A  +VT  QR   K                      G +  
Sbjct: 737 AFKNGIDIHTATAARVYGIAIEEVTPTQRRNAKA--------------VNFGIIYGQS-- 780

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           +            + + +  ++  +   
Sbjct: 781 ----------------------------AFGLSQNLGIPRKEAAEIIEQYFTQYPGIKRY 812

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            ++      +                          N  +    GR    RD+ +     
Sbjct: 813 MSDTMNFARE--------------------------NGFVETILGRRRYLRDINSANQ-- 844

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVC 634
            T      R            +Q  + D++   M+N  K          + + VHDE+V 
Sbjct: 845 -TVRGFAERNAINAP------IQGSAADMIKVAMINIHKDIQDQGLQSKMTMQVHDELVF 897

Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +   ++      +    M +       +P++ E  E + +
Sbjct: 898 DVLKSEVEAMKKIIAHRMKTAIK--TTVPIEVEIGEGENW 935


>gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 965

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 100/707 (14%), Positives = 198/707 (28%), Gaps = 164/707 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
              +D ET     L             ++ F+              H+  +     E L 
Sbjct: 383 ICAVDTETDGLDPLA----------ANIVGFSIATAPGKACYVPLKHEGTLEAPTGEQLA 432

Query: 63  -------------NTDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARSNGLPSA 108
                        +  V  + HN+ F+  +L     + +  I     T++++      + 
Sbjct: 433 VDAALKLLAPLLQDDAVLKIFHNAKFDLLILD-HAGIPLSSITAVDDTMLISY--SQSAG 489

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L            ++     L       ++         P  +       +Y   D  VT
Sbjct: 490 L------HGQGMDELSNLH-LNHTPITYDSVTGTGRNRVPFAQVPVETATKYAAEDADVT 542

Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             ++  L P              E+ L  +   +   G  VD      L++  +     +
Sbjct: 543 LRLWYVLHPTLRTNKALALYEQIERPLSVILADMEKAGIAVDRTELDRLSKDFEARMQGM 602

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274
           + ++         +    ++L   LF E GL      +    +T   VL           
Sbjct: 603 ENDIYEAAGRQ-FNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTDSSVLQDLADQGHDLP 661

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                  + ++      + L+     D R+  + Q    + TGR S      QN+P  + 
Sbjct: 662 ARILAWRQLAKLKSTYTDALLRQAGRDDRVHTSFQMAI-TSTGRLSSTDPNLQNIPVRTE 720

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA  GKKL+ AD + IE R+LA +A 
Sbjct: 721 EGTR-------------------------IRQAFIAPSGKKLISADYSQIELRLLADVAN 755

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF+ G+D++  T +  FN+    +    R   K +                   
Sbjct: 756 IPALREAFQLGQDIHARTASEVFNIPLEGMDALTRRRAKAIN--------------FGII 801

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                    +             A+  ++
Sbjct: 802 YGIS------------------------------AFGLGKQLGIPAGEARTYIDAYFARY 831

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             + +    + +                              +  ++ P GR      + 
Sbjct: 832 PGIRDYMERMREEART--------------------------HGYVLTPFGRRCYVPGIH 865

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGY---DIVLT 627
              +          R+            Q  + DI+   M+       KAG+    ++L 
Sbjct: 866 EKSAARRQY---AERQAINAPL------QGGAADIIKRAMVHLPLALQKAGFGATRMLLQ 916

Query: 628 VHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE++ ET ++D    + +   +M +    A  +PL  E    + +
Sbjct: 917 VHDELLFETDESDAEAVAEIIKNVMEAAADLA--VPLVVETGIGQNW 961


>gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2]
 gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2]
          Length = 938

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 97/721 (13%), Positives = 204/721 (28%), Gaps = 183/721 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    ++             ++  +   +          H             
Sbjct: 347 YVAVDTETTGLNEMI----------AELVGISLCVEAGQACYIPLTHKSAASDDLFGSDE 396

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                        +LK  L++  V  +  N  ++  +      LDI +     T++++ +
Sbjct: 397 MAEGQMDFDECLAMLKPVLQDPAVIKIGQNMKYDAKIFAR---LDIDVAPIDDTMLMSYA 453

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  + E           G   I      +             R       +
Sbjct: 454 MNAGKHNHGMDTLSERY--------LGHTPIPI----KPLLGSGKSAITFDRVPVDDAVK 501

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  ++++ +P     +           L  +   +   G  VD      ++ 
Sbjct: 502 YAAEDADITLRLWQQFKPQLHMNRVTTVYETMERPLVPVLAQMERHGIKVDRDTLSRMSN 561

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---------TTCQ 260
               +   L+ E++ +      +    ++L   LF E GL + D  +         +T  
Sbjct: 562 AFAQKMAGLEDEIQEMAGRP-FNVGSPKQLGEILFDEMGLEMPDGKKPSTGKTGAYSTGA 620

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRW 319
            VL     L     ++ + R   S+      + L E +N   GR+  +    GA+ TGR 
Sbjct: 621 DVLEDLATLHDMPRRILDWRQ-LSKLKSTYTDALQEHINAETGRVHTSYSIAGAN-TGRL 678

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           +      QN+P  S                              +R   +A +GK +V  
Sbjct: 679 ASTDPNLQNIPVRSEEGRR-------------------------IREAFVAEDGKVIVSL 713

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA +AG     +AF  G D++  T +  F+V   ++T D R   K +    
Sbjct: 714 DYSQIELRILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDEMTPDVRRQAKAINF-- 771

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++                                  A      
Sbjct: 772 ------------GVIYGIS------------------------------GFGLARNLRIP 789

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +     + ++   + +  ++     ++                          N  
Sbjct: 790 RGEAQGFIDRYFERFPGIRKYMDDTVAFAKE--------------------------NSY 823

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +    GR +   ++               R            +Q  + D++   M+    
Sbjct: 824 VQTLFGRKINTPEINAK----GPHAGFAKRAAINAP------IQGTAADVIRRAMIRMPD 873

Query: 620 A----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKR 672
           A       ++L VHDE++ E  +    +       +M +   P+    + L  +  +   
Sbjct: 874 AIAGLPAKMLLQVHDELIFEVEEGAVDDLITAARDVMENASDPAVKLDVKLAVDAGQGAN 933

Query: 673 Y 673
           +
Sbjct: 934 W 934


>gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 933

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 100/705 (14%), Positives = 186/705 (26%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   L             +I  +   +          H               
Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHAL 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  V  V  +  ++  V++    +++  +    TL+ +           + +
Sbjct: 408 AQLAPLLTDPAVRKVGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDMDS 465

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +  P  + +      Y   D  +T  +
Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLDDATRYAAEDADITLRL 513

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G CVD A     +  +        Q
Sbjct: 514 HHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 574 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIADQHELPRVI 632

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   S+      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 633 LEYR-GLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 691 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 725

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AF +G D++  T A  F      V+ D+R   K +                    
Sbjct: 726 PGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------GLMY 771

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     +  ++ 
Sbjct: 772 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 801

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +      Q                                 +    GR L    +  
Sbjct: 802 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 833

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
             +          R            +Q  + DI+   M+              ++L VH
Sbjct: 834 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMILQVH 886

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E          S +   M S       +PL  +      +
Sbjct: 887 DELVFEADVDFVDTLLSEVTTRMASAAE--LRVPLVVDSGVGDDW 929


>gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 933

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 99/705 (14%), Positives = 186/705 (26%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   L             +I  +   +          H               
Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTHAL 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  V  V  +  ++  V++    +++  +    TL+ +           + +
Sbjct: 408 AQLAPLLTDPAVRKVGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDMDS 465

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +  P  + +      Y   D  +T  +
Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLDDATRYAAEDADITLRL 513

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G CVD A     +  +        Q
Sbjct: 514 HHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 574 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 632

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 633 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 691 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 725

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AF +G D++  T A  F      V+ D+R   K +                    
Sbjct: 726 PGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------GLMY 771

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     +  ++ 
Sbjct: 772 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 801

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +      Q                                 +    GR L    +  
Sbjct: 802 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 833

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
             +          R            +Q  + DI+   M+              ++L VH
Sbjct: 834 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMILQVH 886

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E          S +   M S       +PL  +      +
Sbjct: 887 DELVFEADVDFVDTLLSEVTTRMASAAE--LRVPLVVDSGVGDDW 929


>gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160]
 gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160]
          Length = 913

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/701 (15%), Positives = 204/701 (29%), Gaps = 162/701 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +   +          H             + 
Sbjct: 339 SFDTETTSLDPMI----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ D   V  +  ++  VL     +++       TL+ +              
Sbjct: 389 AKLKPWLESADHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLESYVLESHRTHDMDSL 446

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+   +K            K E       +       A     EY   D  +T  + + 
Sbjct: 447 ALRHLGEKTI----------KYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQA 496

Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P  + E+               + + +   G  +D       +  +     +L+ E  
Sbjct: 497 LYPQIAAEKTLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSSEIATRLIQLEGEAY 556

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F + GL +   T +    T + VL    +  P    +  +
Sbjct: 557 ELAGG-EFNLGSPKQIGQIFFEKLGLPVIKKTPSGAPSTDEEVLQKLAEDYPLPKVLLEH 615

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N       T      + TGR +      QN+P  +      
Sbjct: 616 R-GLSKLKSTYTDKLPRMVNRQTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRR- 673

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G KLV AD + IE R++A ++G++  +
Sbjct: 674 ------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLM 709

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T +  FNV P +V+ DQR + KV+                    G++ 
Sbjct: 710 RAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVINF--------------GLIYGMS- 754

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A        A +     +  ++  V+ 
Sbjct: 755 -----------------------------AFGLASNLGITRDAAKMYIDRYFARYPGVAR 785

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             +E   + +                              +    GR L   ++      
Sbjct: 786 YMDETRLSAK--------------------------AKGYVETVFGRRLWLPEINGGNGP 819

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                    R            +Q  + D++   M+         K G  +++ VHDE++
Sbjct: 820 RRQA---AERAAINAP------MQGTAADLIKMSMIAVQNWIEDSKIGTRMIMQVHDELI 870

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E PD +       L  LM      A  +PL AE      +
Sbjct: 871 LEVPDAELSEVRKRLPELMCGVA--ALKVPLVAEVGTGLNW 909


>gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868]
 gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868]
 gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM]
 gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Riemerella anatipestifer RA-GD]
          Length = 935

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 99/699 (14%), Positives = 218/699 (31%), Gaps = 161/699 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKE 59
           +  D ET S  ++          +  +I  +F +                   + +  + 
Sbjct: 365 VCFDTETTSLDEM----------EAELIGISFSYKKGLAYYVPIPENRAEAQAIVERFRP 414

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117
             E   +  +AHN  ++  VL     +++       T++            +  + E   
Sbjct: 415 FFEKESILKIAHNLKYDYKVLLNY-GIEV-TGNLFDTMIAHYLLNPDGRHGMDYLSEMY- 471

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             + K    + LI +              K           +Y   D  +T ++++   P
Sbjct: 472 -LNYKPIALETLIGK---------KGKGQKTLREIDLPTQTQYAAEDADITFQLYEIFSP 521

Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +   +   G  +D       +  ++ +   L+ ++     
Sbjct: 522 QLKKEEVEEVFYKIEMPLVKVLAKMELTGVALDEEWLKDESISLEQDLKILEGQIFEQAG 581

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    ++L   LF +  L  +   T+    +T + VL            +   R  
Sbjct: 582 -EEFNINSPKQLGDILFEKLKLDPKAKKTKTGQYSTSEDVLQKLSHKHEIIKLILEYRQ- 639

Query: 283 ASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             +     ++ L   ++  DGR+  +     A+ TGR +      QN+P  +        
Sbjct: 640 LQKLKSTYVDALPNQISPIDGRVHTSFAQTVAA-TGRLASNNPNLQNIPIRTERG----- 693

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 VR   +A +G K+V AD + IE R++A ++GE+  +KA
Sbjct: 694 --------------------QQVRGAFVAPKGSKIVSADYSQIELRLIAEISGEETMIKA 733

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+ G+D++ +T ++ F+V   +V+K QR+  K +   +                      
Sbjct: 734 FKEGQDIHASTASKLFDVPLNEVSKTQRSQAKTVNFGII--------------------- 772

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                    ++    A +     T  +++  ++ + + ++    
Sbjct: 773 -----------------------YGQSAFALADQTGLSRTDAKQLIDSYYETYPKLKAFM 809

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
            E  Q   +                             +    GR    +D+ +N   + 
Sbjct: 810 TEQVQVARK--------------------------KGYVETIMGRKRHLKDINSNNFVVR 843

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
               +               +Q  + DI+   M+              ++L VHDE+V E
Sbjct: 844 GHAERN---------AVNAPIQGSAADIIKLAMIKIDSEIKAQGLKTKMLLQVHDELVFE 894

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +   A +++   M +   ++  +PL  E      +
Sbjct: 895 VPNEEIEVATTLIKQEMETA--YSTKVPLLTEVGVGDNW 931


>gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12]
 gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12]
          Length = 859

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 101/699 (14%), Positives = 208/699 (29%), Gaps = 160/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56
            +D ET S   +             ++  +   ++        +H           +   
Sbjct: 287 CLDTETTSLDIMA----------AEIVGISLAIEEKKAAYIPFIHTDGSVQLLRDEVFAA 336

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +K  LEN  +  +  N  ++ +VLK    + +    +  T++ +      +         
Sbjct: 337 IKPILENPAIKKIGQNIKYDYSVLKNH-GIHLQGLAY-DTMLESYILNSNAG-------- 386

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +     +   K L  +    E       +     +        Y   D  +T ++  +L 
Sbjct: 387 RHDMDTLSL-KYLGHKTITFEDIAGKGAKQLRFDQIPVDKASVYAAEDADITLQLHHKLY 445

Query: 177 PL---------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           P+         +  E  L  +   +  RG  +D        + +      L++E   L  
Sbjct: 446 PMMAESLHSVFNDIEMPLIPVLAEMELRGVLIDANTLEQHGKRLKERIKILEEEAIQLAG 505

Query: 228 GLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               +    ++L+  LF E  +           +T + VL         A  +  +R   
Sbjct: 506 -KPFNLSSPKQLQEILFNEQKIPVIAKTPTGQPSTAESVLQELAFDYRLAAVILEHR-GL 563

Query: 284 SRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           ++     ++ L + +N   GR+  +     A+ TGR S      QN+P  +         
Sbjct: 564 TKLVSTYIDALPKKINAETGRVHTSYNQAVAA-TGRLSSSEPNLQNIPIRNEEGR----- 617

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R+  IA   + ++ AD + IE R++A ++ ++  L AF
Sbjct: 618 --------------------LIRTAFIAPPEQVILAADYSQIELRIMAHLSQDENLLTAF 657

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A  F++A  +VT +QR   K +                    G++    
Sbjct: 658 ANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVN--------------FGLIYGMSAFGL 703

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A  +                                     +     + Q++ +V E  N
Sbjct: 704 AKQI------------------------------GVERQDAQNYIDTYFQRYPKVLEYMN 733

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              Q   +                             +    GR L   ++         
Sbjct: 734 RTRQQAHE--------------------------QGYVETLCGRRLYLPEINTRNLMR-- 765

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIVLTVHDEIVCE 635
             +   R            +Q  + DI+ + M+N  K           +++ VHDE+V E
Sbjct: 766 -QKAAERTAINAP------MQGTAADIIKKAMINIAKWQNAQATPPARMIMQVHDELVFE 818

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +   ++  +  LM         +PL         +
Sbjct: 819 VASQEIEASTVKIRQLMEQAMQ--LSVPLLVSIGTGPNW 855


>gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65]
 gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65]
          Length = 916

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 206/700 (29%), Gaps = 157/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            ID ET S          KY E   ++  +     +        HD            + 
Sbjct: 341 AIDTETTSL---------KYME-AEIVGISLAVAPNEACYIPLAHDYAGAPEQLDRDWVL 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALK 110
           Q +K  LE+     V  N  ++  VLK     DI ++     T++ +           + 
Sbjct: 391 QKMKPLLEDETPKKVGQNLKYDAHVLKNY---DIELNGIAHDTMLESYVLNSTASKHNMD 447

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + +           G E I      E+      +    ++      GEY   D  +T  
Sbjct: 448 DLAKHY--------LGHECIDF----ESIAGKGAKQLTFNQIPVEQAGEYAAEDADITLR 495

Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L P               E  L  +   +   G  V+    H  +  ++    +L+
Sbjct: 496 LHQVLWPQLEADESLLTLYKKVELPLVQVLTNMEYVGASVNADKLHQQSSEIEQRLQELE 555

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           ++   +    V +    ++L+   F +  L +   T     +T + VL            
Sbjct: 556 RKAHDIAG-EVFNLGSTKQLQAIFFEKLELPVIKKTPKGQPSTAEEVLVELSHDYELPKV 614

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R   ++      + L   +NS  +   T      + TGR S      QN+P  +  
Sbjct: 615 ILEHR-GLAKLKNTYTDKLPLMINSKSQRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEE 673

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             +                         +R    A EG  LV AD + IE R++A ++G+
Sbjct: 674 GRK-------------------------IRQAFEAPEGYTLVAADYSQIELRIMAHLSGD 708

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF+ G+D++  T A    V  A V  +QR   K +   L Y   A          
Sbjct: 709 KGLLDAFKNGKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIYGMSA-----FGLAR 763

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +   + +   + +    +E   +    +   G      +   R    
Sbjct: 764 QLGIGRSEAQEYIDKYFDRYPGVKKYMESTRELAAKQGYVETLFGRRLYLPEINSRNGMR 823

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +                           
Sbjct: 824 R-----QAAERTAINAPMQGTAADIIKRAMIKMHQW------------------------ 854

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                     +Q  + D+              +++ VHDE++ E
Sbjct: 855 --------------------------IQESAHDV-------------HMIMQVHDELIFE 875

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            PD       + +  +M +       +PL  +      ++
Sbjct: 876 VPDGQLDAVSAEIKSIMEAAAD--LDVPLLVDVGHGDNWQ 913


>gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083]
 gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083]
          Length = 945

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 100/715 (13%), Positives = 191/715 (26%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    D+             ++  +   +          H             
Sbjct: 359 YVAVDTETTGLNDMI----------ADLVGISMCSEAGKACYIPLTHKDASTDDLFGSDE 408

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                    +    LK  LE+  V  +  N  ++  +        I I     T++++ +
Sbjct: 409 LADGQLDLEIAIAALKPLLEDPSVMKIGQNMKYDAKIFARY---GIEIAPIDDTMLISYA 465

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    + A+ E           G   I      +             R        
Sbjct: 466 QHAGLHNHGMDALSERY--------LGHTPIPI----KPLLGTGKSAITFDRVPIDHATP 513

Query: 160 YCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  +++ L+P              E+ L  +   +   G  VD  +   ++ 
Sbjct: 514 YAAEDADITLRLWQHLKPTLHSARTTRVYETMERPLVPVLAQMERYGIKVDRDVLSRMSN 573

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSS 265
               +   L+ E+  +      +     ++   LF E GL           +T   +L  
Sbjct: 574 AFAQKMAGLEAEIHEMAGHS-FNVGSPAQVGEILFDEMGLEGGKKGKNGKYSTGADILED 632

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    ++ + R   S+      + L + +N D     T   +  + TGR +     
Sbjct: 633 LATEHEMPRRILDWRQ-LSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 691

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   IA EGK LV  D + IE
Sbjct: 692 LQNIPIRSEEGRR-------------------------IREAFIAEEGKVLVALDYSQIE 726

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +AG     +AF  G D++  T +  F+V   ++T D R   K +          
Sbjct: 727 LRILAHVAGIDSLKQAFRDGHDIHAMTASEMFDVPLDEMTADVRRQAKAIN--------- 777

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A       +  + 
Sbjct: 778 -----FGVIYGIS------------------------------GFGLARNLRIPRSEAQG 802

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               +  +   + E  N+     +                           N  +    G
Sbjct: 803 FIDRYFDRFPGIKEYMNDTTAFAK--------------------------ANDRVETLFG 836

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621
           R +   ++               R            +Q  + DI+   M+          
Sbjct: 837 RVIHTPNINAK----GPQAGFAKRAAINAP------IQGTAADIIRRAMIRMPDAIKDQP 886

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E               +M +   P     +PL  +  +   +
Sbjct: 887 AKMLLQVHDELLFEVEKDGVDQLIKTAKDIMENAADPVVKLDVPLIVDAGQGANW 941


>gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
 gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559]
          Length = 956

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/699 (15%), Positives = 211/699 (30%), Gaps = 161/699 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKE 59
           +  D ET     LT            ++  AF +D                  + + L+ 
Sbjct: 386 VCFDTETTGLNPLT----------AELVGIAFSWDAGKGFYLPFSDNKEEAQQLIEELRP 435

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117
             EN D+  V  N  ++  VL    ++++       T++            +  + E   
Sbjct: 436 FFENEDIQKVGQNLKYDIKVLHKY-DIEVR-GPLFDTMLAHYLINPDMRHNMDVLAETY- 492

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +      + LI +              K           EY   D  +T ++ +  E 
Sbjct: 493 -LNYSPVSIETLIGK---------KGKNQKSMRDVPLEDQTEYAVEDADITLQLKEHFEK 542

Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +   +   G  +D A  + L + ++ +   L+  +     
Sbjct: 543 ELGDANTQKLFDDIEIPLLRVLAAMELEGINLDKAFLNNLAEDLNNDIATLEASIYKEAG 602

Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    ++L   LF +  L      T     +T + VLS           V + R  
Sbjct: 603 -EEFNIGSPKQLGEILFDKLKLVEKPKKTRTGQYSTAEDVLSYLAADHTIIQNVLDYR-G 660

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++     ++ L E +  DGR+        A+ TGR S      QN+P  +         
Sbjct: 661 LAKLKSTYVDALPEQVEEDGRVHTDYMQTVAA-TGRLSSNNPNLQNIPIRTERGR----- 714

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                VR   +   E   L+ AD + IE R++A ++ E   ++A
Sbjct: 715 --------------------QVRKAFVPKNEDYVLLAADYSQIELRIIAALSEEDTMIEA 754

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+ GED++ +T A+ FNV   +VT++QR+  K +   + Y            +   +   
Sbjct: 755 FKNGEDIHASTAAKVFNVPINEVTREQRSNAKTVNFGIIY-----GVSAFGLSNQTD--- 806

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                  +  + +   + + + ++    
Sbjct: 807 ------------------------------------LTRSESKDLIDTYYKTYPKLRNYM 830

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           + L     +                          +  +    GR    +D+ ++   + 
Sbjct: 831 SNLVDDARE--------------------------DGYVSTVLGRRRYLKDINSSNGVVR 864

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
               +               +Q  + DI+   M+N  K          ++L VHDE+V +
Sbjct: 865 GAAERN---------AVNAPIQGSAADIIKVAMINIHKKLAEGNFKTKMLLQVHDELVFD 915

Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
            P  +  +   L    M S   +   +PL  E      +
Sbjct: 916 VPKNELEDIKTLVKTEMESA--YTLSVPLDVEVGVGNDW 952


>gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523]
          Length = 897

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 105/702 (14%), Positives = 206/702 (29%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S              +  ++  +F   +         H             + 
Sbjct: 323 AFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVL 372

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK    +     VAHN  F+  VL     ++I   +   T+++A              
Sbjct: 373 DKLKPLFADVKKAKVAHNFKFDEKVLSKYA-IEIN-GKVDDTMIMAYVLKSSGKHDMDSL 430

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +      K   G E IA               +   +    +  +Y   D  +T  +F  
Sbjct: 431 S------KEHLGIEPIAY----TAIAGTGKHQQTLDQIDIEIVAKYAAEDADITFRLFNH 480

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
            + L  +++ L+ L   I              G  +D       +  ++    +L+ +  
Sbjct: 481 FKALLEQDETLYKLYCEIEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCY 540

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +L      +     +L+  LF + GL     T     +T + VL    +    A  +   
Sbjct: 541 NLAGQ-EFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKY 599

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++ + R+  +    G + TGR S      QN+P  S    + 
Sbjct: 600 RH-LSKLKNTYTDKLPKMLDVNSRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 656

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G  +V AD + IE R++A ++ ++  L
Sbjct: 657 ------------------------IREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLL 692

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF    D++  T A    +   +V+ +QR   K +                    G++ 
Sbjct: 693 KAFNQSLDIHSATAAEVLGIGIDEVSSEQRRKAKAINF--------------GLIYGMSA 738

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  ++                                    +     +  ++  V E
Sbjct: 739 FGLAKQLEI------------------------------PRAEAQEYIDIYFNRYPSVKE 768

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +  +Q                          N  +    GR L   ++ +    
Sbjct: 769 YMTTAKEFAKQ--------------------------NGYVETILGRRLYLPEINSKNVM 802

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632
                    R            +Q  + DI+ + M++          +   +V+ VHDE+
Sbjct: 803 QRNA---AERAAINAP------MQGTAADIIKKAMIDVNTMILQEYNSEVKMVMQVHDEL 853

Query: 633 VCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E      E   + +  +M +       +PL+      + +
Sbjct: 854 VFEVKKTKLEEIVAKIKSIMEAAVK--LSVPLEVNVDAGESW 893


>gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
 gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A]
          Length = 940

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 100/702 (14%), Positives = 209/702 (29%), Gaps = 162/702 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
            ++  D ET S   L          +  ++  AF ++           D      +    
Sbjct: 367 KSVCFDTETTSLNAL----------EAELVGIAFSWNKGKGYYLALPEDKTEVLEILDPF 416

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE- 114
           K   E+ ++  + HN  ++  VL+   ++ +       T++            +  + E 
Sbjct: 417 KAFFEHPEIEKIGHNLKYDLKVLRNY-DIHVK-APLFDTMIAHYLINPDMRHNMDILAET 474

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L  S+Q + E   LI +                    +     EY   D  +T ++ + 
Sbjct: 475 YLNYSAQSITE---LIGK---------KGKNQGTMREVSLEQQTEYAVEDADITLQLKEY 522

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                            E  L  +   +   G  +DV+   +L+  +  +  KL+  +  
Sbjct: 523 FHEEMSTAKTLELYQKVELPLVSVLTNMECEGINLDVSFLKSLSVTLAEDIQKLEAAIFE 582

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +      +    ++L   LF +  L      T+    +T + VLS   K  P    +  +
Sbjct: 583 VAG-ENFNLASPKQLGLILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHPIISDIL-D 640

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                +     ++ L   +N       T+     + TGR S      QN+P  +      
Sbjct: 641 WRSLQKLQNTYVDALPNEINPKTGRVHTIYNQAVAATGRLSSNNPNLQNIPIRTERG--- 697

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                                   VR   I   E   L+ AD + IE R++A ++G++  
Sbjct: 698 ----------------------QQVRKAFIPRDENHVLMAADYSQIELRIIAALSGDEGM 735

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF+  ED++  T ++ FNV   +VT++QR   K +   +                G++
Sbjct: 736 LSAFQNNEDIHSATASKVFNVPLEEVTREQRGNAKTVNFGII--------------YGVS 781

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               +                                     +  + + + +   + ++ 
Sbjct: 782 AFGLSQQ------------------------------TNLNRSEAKELIETYYATYPKLR 811

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
               +                                 N  +    GR    +D+ +  +
Sbjct: 812 SYMQDQVDFARD--------------------------NGYVSTVLGRRRYLKDINSQNA 845

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
            +     +               +Q  + DI+   M+              ++L VHDE+
Sbjct: 846 IVRGAAERN---------AVNAPIQGSAADIIKLAMIAIQNRLENKNWKSKMLLQVHDEL 896

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V + P  +       +   M +       +PL  +      +
Sbjct: 897 VFDVPKEEINTLQEMVKKEMENAFE--INVPLIVDIGIGNNW 936


>gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 677

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 102/703 (14%), Positives = 197/703 (28%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  D+         HD            + 
Sbjct: 101 AFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVL 150

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL     +++   ++  T++ +              
Sbjct: 151 EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMDS 208

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++        Y   D  VT  +  
Sbjct: 209 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHN 258

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     ++             L  +   I   G  +D       +  +     +L+Q+ 
Sbjct: 259 RLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKA 318

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL         T +T + VL       P    +  
Sbjct: 319 YEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPKLILE 377

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  +     
Sbjct: 378 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 436

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 437 -------------------------IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQAL 471

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V+  QV+ +QR   K +                    G++
Sbjct: 472 LDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVN--------------FGLIYGMS 517

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 518 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 547

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   A                            +   +    GR L   ++ +   
Sbjct: 548 QYMEDTRSAA--------------------------ADKGYVETIFGRRLHLPEIKSRNG 581

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 582 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 632

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S +  LM S       +PL AE      +
Sbjct: 633 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 673


>gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 934

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 99/705 (14%), Positives = 188/705 (26%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   L             +I  +   +          H               
Sbjct: 359 AFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQAL 408

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  V  +  +  ++  V++    +++  +    TL+ +           + +
Sbjct: 409 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDMDS 466

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +  P  + +      Y   D  +T  +
Sbjct: 467 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLEDATRYAAEDADITLRL 514

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   I   G CVD A     +  +        Q
Sbjct: 515 HRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 574

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 575 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 633

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 634 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 691

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 692 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 726

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++  T A  F      V+ D+R   K +                    
Sbjct: 727 PGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINF--------------GLMY 772

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     +  ++ 
Sbjct: 773 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 802

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +      Q                                 +    GR L    +  
Sbjct: 803 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 834

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
             +          R            +Q  + DI+   M+N             ++L VH
Sbjct: 835 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVNVDGWIADHAQRAKMILQVH 887

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E          S +   M         +PL  +      +
Sbjct: 888 DELVFEADVDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 930


>gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
 gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW]
          Length = 987

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 98/721 (13%), Positives = 193/721 (26%), Gaps = 182/721 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
           T+ +D ET     ++            ++  +   +          H             
Sbjct: 395 TVAVDTETDGLTPVS----------AGLVGISLSVEPGRACYIPVQHIDPATPKGATGGL 444

Query: 52  ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                               LK  LE+  V  V  N  F+  +        I +     T
Sbjct: 445 DLGGTPPPPPQIALADALARLKPLLEDPAVLKVGQNVKFDWQIFARH---GIAMAPIDDT 501

Query: 97  LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           ++++   G       +  +             G   I                    R  
Sbjct: 502 MLISYVLGTGLHGHGMDELALRH--------LGHTTIKYD----EVTGTGKSRITFDRVP 549

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVAL 203
                +Y   D  +T  + + L+    ++            L  +   +  RG  VD A+
Sbjct: 550 LDKARDYAAEDADITLRLHRVLKHDLVRQHMVTLYETVERPLVPVVARMESRGVLVDRAV 609

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TC 259
              ++        +++ E++ L      +    ++L   LF E  L      ++    T 
Sbjct: 610 LRQMSSDFAQRMLEMEAEIQKL-APRAFNVGSPKQLGEILFDEMKLPGGSKGKSGAWGTD 668

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL    +   +  Q   +  + ++      + L E +++      T   L A+ TGR 
Sbjct: 669 SGVLEGLAEQGVEIAQKVLDWRQLAKLKSTYTDALAEQIDARTGRVHTSFALAATATGRL 728

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  +    +                         +R   +A  G  L+  
Sbjct: 729 SSTDPNLQNIPIRTEEGRK-------------------------IRRAFVARPGHLLLSV 763

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R++A MAG     +AF  G D++  T ++ F V   Q+T + R   K +    
Sbjct: 764 DYSQIELRLVAEMAGVPALRRAFHDGIDIHAMTASQVFGVPLDQMTSEIRRKAKAIN--- 820

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++                                    +    
Sbjct: 821 -----------FGIIYGIS------------------------------GFGLGRQLGIT 839

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                   + + ++   +            +   +G                        
Sbjct: 840 PGEAGAFIRQYFERFPELQTYMETTKAFARE---HGYVTTLL------------------ 878

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT- 618
                GR    + +               R+           +Q  + DI+   M     
Sbjct: 879 -----GRRCWIQGIREKAPARRAY---AERQAINAP------IQGTAADIIKRAMARIEP 924

Query: 619 -----KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672
                K    ++L VHDE++ E P+      + +   +M        G+PL AE   +  
Sbjct: 925 ALAAAKLDAAMLLQVHDELLFEVPEAQVEETAAVVRGVMEGAA--GLGVPLVAEAGWAPN 982

Query: 673 Y 673
           +
Sbjct: 983 W 983


>gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 934

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 99/705 (14%), Positives = 188/705 (26%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   L             +I  +   +          H               
Sbjct: 359 AFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQAL 408

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  V  +  +  ++  V++    +++  +    TL+ +           + +
Sbjct: 409 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-EDTLLESFVLNSGSARHDMDS 466

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +  P  + +      Y   D  +T  +
Sbjct: 467 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLEDATRYAAEDADITLRL 514

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   I   G CVD A     +  +        Q
Sbjct: 515 HRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 574

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 575 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 633

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 634 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 691

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 692 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 726

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++  T A  F      V+ D+R   K +                    
Sbjct: 727 PGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINF--------------GLMY 772

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     +  ++ 
Sbjct: 773 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 802

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +      Q                                 +    GR L    +  
Sbjct: 803 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 834

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
             +          R            +Q  + DI+   M+N             ++L VH
Sbjct: 835 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVNVDGWIADHAQRAKMILQVH 887

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E          S +   M         +PL  +      +
Sbjct: 888 DELVFEADVDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 930


>gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
 gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
 gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192]
          Length = 897

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 116/702 (16%), Positives = 201/702 (28%), Gaps = 167/702 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-------QV 56
           + +D ET     LT            ++  +F  D+            V P       +V
Sbjct: 329 VAVDTETDGLDPLTC----------RLVGVSFAVDEGRACYVPLAAPDVRPLPADVVREV 378

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113
           L   L +T+V  V  N  F+  VL+       P   +  T+V A           L  + 
Sbjct: 379 LSPLLVSTEVVKVGQNLKFDYHVLRRWGVR--PEGPFFDTMVAAWLLESDAGRYNLDRLA 436

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E           G   I      E                    G Y   D  +   + +
Sbjct: 437 EKY--------LGWRTIHYKDVVEKGA-------SFETVPVAEAGVYAAEDADIALRLSR 481

Query: 174 RLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L+               E  L  +   + + G  +D        + ++   + +++E+ 
Sbjct: 482 VLKERLEAEGLGRVFYEMEMPLLSILARMEEWGIGLDGEALSAFGRELEERISTIEKEIF 541

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
            L      +    ++L+  LF+E GL     T+   +T   VL       P A +V   R
Sbjct: 542 ELVGH-EFNVGSTKQLQEVLFVERGLPPVKKTKTGFSTDTSVLEELAARDPVAAKVLEYR 600

Query: 281 MRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
              ++     ++ L   +N   GRL      +G + TGR S      QN+P  +      
Sbjct: 601 -SLTKLKNTYVDVLPGLVNPGTGRLHTWFSQVG-TATGRLSSKDPNLQNIPIKTEEGRR- 657

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +   G   + AD + IE  +LA ++ +    
Sbjct: 658 ------------------------IREAFVPQRGWWFLSADYSQIELVILAHLSEDPALC 693

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T +  F V P  VT +QR I K +                    G++ 
Sbjct: 694 RAFREGEDVHRATGSLLFGVPPEAVTPEQRRIAKTINF--------------GVIYGMS- 738

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + E        ER   A+   ++ V  
Sbjct: 739 -----------------------------AFRLSRELGIPRKEAERFIDAYFTTYAGVRA 769

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               + +   +  E G                             GR      + +    
Sbjct: 770 F---IERTIAEAEEKGYVTTL-----------------------FGRKRPLPYITSRN-- 801

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633
             T      R            +Q    DI+   M++             ++L VHDE++
Sbjct: 802 -KTQKTGAERIA------VNTPIQGSGADIIKLAMIDLDAQMRRMGLASRMILQVHDELI 854

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
            E P  +      L    M         +PL+ E    + + 
Sbjct: 855 FEVPPEELEVMKRLVRERMEGVVR--LSVPLRVEMGVGRNWG 894


>gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 958

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 111/707 (15%), Positives = 207/707 (29%), Gaps = 166/707 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 379 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 428

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 429 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 486

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 487 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 534

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 535 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 594

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           +  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 595 QAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 653

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 654 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 711

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 712 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 746

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F +AP  V+ +QR   K +                  
Sbjct: 747 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTIN--------------FGL 792

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+     A  +  ++                                 +     +  +
Sbjct: 793 IYGMGQYGLAKSLGIDNLS------------------------------AKTFIDRYFAR 822

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V+E      +                                 +    GR L   D+
Sbjct: 823 YPGVAEYMQRTKEQA--------------------------AAQGYVETLFGRRLYLPDI 856

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
            N  +          R            +Q  + D++   M++ ++          +++ 
Sbjct: 857 RNKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQ 907

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E P+ +       L  +M         +PL AE      +
Sbjct: 908 VHDELVLEVPEAELDLVKEKLPQIMEKVDEGMLNVPLVAEVGVGMNW 954


>gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
 gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136]
          Length = 954

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 98/700 (14%), Positives = 209/700 (29%), Gaps = 159/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPV---MPQVL 57
               +D ET     +T            ++  +F F ++         +      + + L
Sbjct: 382 DFFSLDTETTGTDPIT----------AELVGMSFSFAENQAFYVPVPANREEALAIVKKL 431

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           K  +EN     +  N  ++  VL     +++       T++            +  + E 
Sbjct: 432 KPIIENEKTLKIGQNIKYDMLVLGNY-GVEVR-GPMFDTMIAHYVLQPELHHGMDYLAEV 489

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +  + +ELI                K     +     +Y   D  VT ++ K L
Sbjct: 490 Y--LKYETIKIEELIG---------PKGKNQKNMRDLSPTSVYKYACEDADVTLKLKKVL 538

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E             + E  L  +   +   G  +D       +Q       +L++E+  L
Sbjct: 539 EKELIENNVNELFQTIEMPLVPVLAYMERNGVRIDTEALKETSQHFTARMKQLEEEVHQL 598

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF    +  +   T+T    T + VL S +       ++  +R
Sbjct: 599 AGM-EFNIASPKQVGEVLFDRLKITDKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR 657

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L   +N       T      + TGR S      QN+P  +   +E  
Sbjct: 658 -GLKKLLGTYIDALPLLINPKTGHIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE-- 714

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I  EG +   AD + IE R++A ++G+   ++
Sbjct: 715 -----------------------IRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIE 751

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ G+D++  T A+ +      VT++QR+  K                      G+++ 
Sbjct: 752 AFQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANF--------------GIIYGISVF 797

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  +                                     + +   + + +  V E 
Sbjct: 798 GLAERLNIE------------------------------RKEAKELIDGYFENYPHVKEY 827

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            ++  +  ++                             +     R     D+ +  + +
Sbjct: 828 MDQSIRLAQE--------------------------KGYIETIFKRKRYLPDINSRNAVV 861

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                   R            +Q  + DI+   M+   K          ++L VHDE+  
Sbjct: 862 RGY---AERNAINAP------IQGSAADIIKVAMIRIYKRFMEEGIRSKMILQVHDELNF 912

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                ++     +    M +   +   +PL+A+    K +
Sbjct: 913 SVVPEEKEKVQHIVISEMEAA--YKMKVPLQADCDWGKNW 950


>gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
 gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080]
          Length = 909

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 191/701 (27%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
             D ET S   +             ++  A              HD            + 
Sbjct: 334 AFDTETTSLDYM----------QAEIVGVALAVATDRAAYIPLAHDYPGAPEQLDRDLVL 383

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L+  LE++    V  N  ++  VL     + +       +++ +       +      
Sbjct: 384 TRLRPLLEDSQRAKVGQNLKYDANVLANY-GIALRGIA-HDSMLESYVLDATGS------ 435

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     +   K L  +    E       +    +  A      Y   D  VT ++ + 
Sbjct: 436 --RHDMDTLAL-KYLGEKTTHFEEVAGKGAKQITFNAVAIEQAAPYAAEDAAVTLKLHQT 492

Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   I   G  VD  L    +  +      L+Q   
Sbjct: 493 LWPKLESEAYLSTLYRDIELPLVPILSRIERNGARVDRQLLADQSHELGERLAILEQSAH 552

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L   LF +  L +   T     +T + VL+      P    +   
Sbjct: 553 DLAGQA-FNLGSPKQLGEILFQKLELPVLKKTPKGAPSTAEDVLAELALDYPLPAVLMEY 611

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++       T      + TGR S      QN+P  +      
Sbjct: 612 R-SLSKLRSTYTDRLPDMIDPGTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTAEGRR- 669

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R    A EG+ +V AD + IE R++A ++ ++  L
Sbjct: 670 ------------------------IRQAFCAPEGRSIVAADYSQIELRIMAHLSQDKGLL 705

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF    D++  T A  F V    V+ DQR   K +                    G++ 
Sbjct: 706 GAFGANLDVHSATAAEVFGVPLEDVSSDQRREAKAIN--------------FGLIYGMS- 750

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +        +     + +++  V++
Sbjct: 751 -----------------------------AFGLAKQLRLGRHEAQAYIDRYFERYPGVAD 781

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
              +  +                                 +    GR L   ++      
Sbjct: 782 YMTQTRELAHS--------------------------QGYVETLFGRRLYLPEINARN-- 813

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIV 633
                    R            +Q  + DI+   M+   +          +++ VHDE+V
Sbjct: 814 -KQRQMAAERTAINAP------MQGTAADIIKLAMIAVDEWLSKTDIDALMIMQVHDELV 866

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  DT+     S +  LM    S    +PL  E      +
Sbjct: 867 FEVADTEVATLTSAIPDLMADVAS--LDVPLLVEAGVGTNW 905


>gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
 gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057]
          Length = 953

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 98/700 (14%), Positives = 201/700 (28%), Gaps = 161/700 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            L ID ET     +          +  ++  +F   ++         +      +   L+
Sbjct: 382 ILSIDTETTGTEPM----------EAELVGMSFSDAENKGYYVPVPPNREEALKIINELR 431

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN     V  N  ++  VL+    + +       T++            +  + E  
Sbjct: 432 PLYENEKSLKVGQNIKYDMIVLQNY-GVQVR-GALFDTMLAHYVLQPELRHNMDYLAEIY 489

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +     ELI                K            Y   D  +T ++   LE
Sbjct: 490 LH--YQTIHIDELIG---------AKGKNQKNMRDLPAEDVYRYACEDADITLKLKNVLE 538

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       ++   V   ++++ +  L 
Sbjct: 539 KELKEQGAEHLFYEIEMPLVPVLVNIETNGMRLDTEALKQSSEHFTVRLQEIEKNIYELA 598

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL S +       ++   R 
Sbjct: 599 G-ETFNIGSPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRGKHAVIGKILEYR- 656

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +NS  GR+  +      + TGR S      QN+P      +E  
Sbjct: 657 GLKKLLSTYIDALPQLINSRTGRIHTSFNQAV-TSTGRLSSSNPNLQNIPIRDEDGKE-- 713

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I  +G +   AD + IE R++A ++ ++  + 
Sbjct: 714 -----------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMID 750

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ + +   +VT D R   K                      G+++ 
Sbjct: 751 AFLSGHDIHAATAAKIYKIDIEEVTSDMRRKAKTANFG--------------IIYGISVF 796

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A                                        + +   + + + +V E 
Sbjct: 797 GLAER------------------------------LNVSRQEAKELIDGYFETYPQVKEY 826

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            ++  Q   +                          N  +     R     D+ +  + +
Sbjct: 827 MDKSIQVARE--------------------------NGYVETIFHRKRFLPDINSRNAVV 860

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634
                   R            +Q  + DI+   M +        K    ++L VHDE+  
Sbjct: 861 RGY---AERNAINAP------IQGSAADIIKVAMAHIYQRITSNKLKAKMILQVHDELNF 911

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             P +++     +    M     +   +PLKA+      +
Sbjct: 912 SVPASEKELVQQIVIEEMEHA--YRMHVPLKADCGWGNNW 949


>gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
 gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685]
          Length = 930

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 109/705 (15%), Positives = 207/705 (29%), Gaps = 168/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L+            ++  +              HD            + 
Sbjct: 354 AFDTETDSLDVLS----------ANLVGISCADAPGQAYYIPLAHDYLDAPAQLDREWVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             L+  LE+  V  V  N  ++  V+     + +       T++ +           + +
Sbjct: 404 ARLQPLLEDEKVAKVGQNLKYDIGVMARH-GIILRGVA-FDTMLESYVLNSVAGRHDMDS 461

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L  +    E            ++       EY   D  VT  +
Sbjct: 462 LAARH------------LDHKTITFEEVAGKGKGQLTFNQIPLEQAAEYAAEDADVTLRL 509

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +RL P+              +  L  +   +   G  +D  +    +Q + V    L+Q
Sbjct: 510 HQRLWPMLESEAGPRHVFCDIDMPLVPVLSRMERTGVLIDSTILGQHSQELAVRLNALEQ 569

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +  +L      +    ++L++ LF +  L +   T     +T + VL    +   +  QV
Sbjct: 570 QAHTL-ADEPFNLSSTKQLQSILFDKQQLPILKKTPGGAPSTNEEVLVELAEQGYELPQV 628

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
             +    ++      + L + ++   GR+  +      + TGR S      QN+P  S  
Sbjct: 629 ILDYRTLAKLKSTYTDKLPQMVSPLTGRVHTSYHQAV-TATGRLSSSDPNLQNIPVRSDE 687

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G K+V AD + IE R++A ++G+
Sbjct: 688 GRR-------------------------IRQAFIAPAGSKIVAADYSQIELRIMAHLSGD 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L+AF  G+D++  T A  F +    VT DQR   K +                    
Sbjct: 723 RGLLEAFAAGKDIHRATAAEVFGLPLEAVTADQRRSAKAINF--------------GLIY 768

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +R    + +++ 
Sbjct: 769 GMS------------------------------AFGLARQLNIGRNEAQRYMDLYFERYP 798

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V        Q                                 +    GR L   ++  
Sbjct: 799 GVLAYMERTRQQA--------------------------SEQGYVETLDGRRLYLPEINA 832

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
             +      +   R            +Q  + DI+   M+              +++ VH
Sbjct: 833 RNAMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDAWLQQSQPQVRMIMQVH 883

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P+       S +  LM    S A  +PLK +    + +
Sbjct: 884 DELVFEVPEALVDEVVSHVRTLMEG--SLALAVPLKVDIGCGENW 926


>gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
 gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289]
          Length = 920

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 99/698 (14%), Positives = 194/698 (27%), Gaps = 159/698 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQ---VLKE 59
           + ID ET S   +             ++  +F  +++         +     +   + K 
Sbjct: 350 VSIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYVRIFKP 399

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117
             EN ++  +  N  ++  VL     + +   +   T++            +  + E L 
Sbjct: 400 LYENDNILKIGQNIKYDYEVLNNY-GVTLQ-GKMFDTMIAHYLIQPELHHNMDYMAETL- 456

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               +    +ELI              + K     +     EY   D  +T  +   LEP
Sbjct: 457 -LGYRTIHIEELIG---------PKGKKQKNMRDLSPTDICEYAAEDADITLRLKHLLEP 506

Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +   +   G C+D       ++I      + +QE+     
Sbjct: 507 RLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEAG 566

Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    +++   LF +  +      T+T    T + VL S +   P    + N R  
Sbjct: 567 -ETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNILNYR-G 624

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +     ++ L + +N       T      + TGR S      QN+P  +   +E    
Sbjct: 625 MKKLLSTYIDALPKLINPRTGHIHTSFNQAQTATGRLSSSDPNLQNIPVRTDDGKE---- 680

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R C I  +G     AD + IE R++A ++G++  ++AF
Sbjct: 681 ---------------------IRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAF 719

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A+ ++    +VT  QR   K                      G+     
Sbjct: 720 REGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANF--------------GIIYGITTYGL 765

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A                                          + + +     +V     
Sbjct: 766 AQR------------------------------MGIPNGEARELIQDYFHTFPKVKAYME 795

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           +  +                                       R     D+ +  +   T
Sbjct: 796 QAKETAR--------------------------AKGYAETLFHRRRYLPDINSRNA---T 826

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q    DI+   M+   K          ++L VHDE+    
Sbjct: 827 VRGFAERNAINAP------IQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSV 880

Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              +      +    M +       +PL A+      +
Sbjct: 881 YPEEREQVERIVIEEMQNACQ--LNVPLTADAGWGSNW 916


>gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36]
 gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36]
          Length = 932

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 94/715 (13%), Positives = 192/715 (26%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    D+             ++  +   +         +H             
Sbjct: 346 YVAVDTETTGLDDMV----------AQLVGVSLCVEPGKACYIPLIHKARGSDDLFGSDD 395

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                       ++L   LE+  +  +  N  ++  +      L I +     T++L+ +
Sbjct: 396 LAEGQIPTEEALRLLTPMLEDHSILKIGQNMKYDSKIFAQ---LGINVAPIDDTMLLSYA 452

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  + E              L       +             +       +
Sbjct: 453 MHAGLHGHGMDTLSERY------------LSHTPIPIKPLLGTGKSAITFDKVPLADAVK 500

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  +++  +P   +          E+ L  +   +   G  VD      ++ 
Sbjct: 501 YAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVSVLAAMERSGVKVDRDTLSRMSN 560

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L      +    ++L   LF E GL      +T    T   VL  
Sbjct: 561 AFAQKMAGLEDEIYELAGRK-FNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLED 619

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    +V + R   S+      + L + +N D     T   +  + TGR +     
Sbjct: 620 LATEHDLPARVLDWRQ-LSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 678

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A  GK LV  D + IE
Sbjct: 679 LQNIPIRSEEGRR-------------------------IREAFVAEPGKALVALDYSQIE 713

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AF+ G D++  T +  F V   ++T D R   K +          
Sbjct: 714 LRILAHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAIN--------- 764

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 765 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 789

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    N+     ++                          +  +    G
Sbjct: 790 FIDRYFERFPGIRTYMNDTKAFAKE--------------------------HGFVQTLFG 823

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621
           R +   ++               R            +Q  + D++   M+          
Sbjct: 824 RKIHTPEINAK----GPRAGFAQRAAINAP------IQGTAADVIRRAMIRMPHAIKDLP 873

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E     E +  +    +M +   P     + L  +      +
Sbjct: 874 ATMLLQVHDELLFEVEKGAEDDLIAAARQVMENAADPVVKLDVKLDVDAGVGASW 928


>gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
 gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A]
          Length = 920

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 99/698 (14%), Positives = 192/698 (27%), Gaps = 159/698 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQ---VLKE 59
           + ID ET S   +             ++  +F  +++         +     +   + K 
Sbjct: 350 VSIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYIRIFKP 399

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117
             EN  +  +  N  ++  VL     + +       T++            +  + E L 
Sbjct: 400 LYENDKILKIGQNIKYDYKVLNNY-GVTLQ-GEMFDTMIAHYLIQPELHHNMDYMAETL- 456

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               +    +ELI              + K     +     EY   D  +T  +   LEP
Sbjct: 457 -LGYRTIHIEELIG---------PKGKKQKNMRDLSPTDICEYAAEDADITLRLKHLLEP 506

Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +   +   G C+D       ++I      + +QE+     
Sbjct: 507 RLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEAG 566

Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    +++   LF +  +      T+T    T + VL S +   P    + N R  
Sbjct: 567 -ETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNILNYR-G 624

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +     ++ L + +N       T      + TGR S      QN+P  +   +E    
Sbjct: 625 MKKLLSTYIDALPKLINPRTGHIHTSFNQAQTATGRLSSSDPNLQNIPVRTDDGKE---- 680

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R C I  +G     AD + IE R++A ++G++  ++AF
Sbjct: 681 ---------------------IRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAF 719

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A+ ++    +VT  QR   K                      G+     
Sbjct: 720 REGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANF--------------GIIYGITTYGL 765

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A                                          + + +     +V     
Sbjct: 766 AQR------------------------------MGIPNGEARELIQDYFHTFPKVKAYME 795

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           +  +                                       R     D+ +  +   T
Sbjct: 796 QAKETAR--------------------------AKGYAETLFHRRRYLPDINSRNA---T 826

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q    DI+   M+   K          ++L VHDE+    
Sbjct: 827 VRGFAERNAINAP------IQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSV 880

Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              +      +    M +       +PL A+      +
Sbjct: 881 YPEEREQVERIVIEEMQNACQ--LNVPLTADAGWGSNW 916


>gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1]
 gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1]
          Length = 943

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 96/701 (13%), Positives = 207/701 (29%), Gaps = 164/701 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           +  D ET     L             ++  AF ++           D      + +  + 
Sbjct: 372 VCFDTETTGLKALEV----------ELVGIAFSWEKGKGYYVAFPEDQSETTAILEEFRP 421

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP--SALKAVGE-A 115
             E+T +  V  N  ++  VL      D+P+  +   T++            +  + E  
Sbjct: 422 FFESTTIEKVGQNLKYDIKVLSNY---DMPVKGQLFDTMIAHYLINPDMRHNMDVLSETY 478

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L      + E   LI +                  +       EY   D  +T ++ +  
Sbjct: 479 LNYQPVSIVE---LIGK---------KGKNQLSMRQVPLEQQTEYAVEDADITYQLKEHF 526

Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                              L  +   +   G  +D      L++ + V+  +L++++   
Sbjct: 527 IKELESGHLTKLFSDVEVPLVSVLSAMEIEGINLDPDFLGELSKALAVDIDRLEKDIYEQ 586

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +    ++L   LF +  L      T+    +T + VLS   K       +    
Sbjct: 587 AG-EEFNIGSPKQLGPILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHQIVADIL-EW 644

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +  +     ++ L   +N       T+     + TGR S      QN+P  +       
Sbjct: 645 RQYRKLQSTYVDALPNEINPKTNRIHTVYAQAVAATGRLSSNNPNLQNIPIRTERGR--- 701

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  VR   +   E   L+ AD + IE R++A ++ E   +
Sbjct: 702 ----------------------QVRKAFVPRDENYVLLAADYSQIELRIIAALSKEDTMM 739

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G D++ +T +R FNV   +VT++QR+  K +   +                G++ 
Sbjct: 740 QAFKDGADIHASTASRVFNVPLEEVTREQRSNAKTVNFGII--------------YGVSA 785

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              ++                                    +  + +   + + + ++  
Sbjct: 786 FGLSNQTD------------------------------LTRSESKELIDTYYETYPKLKA 815

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             +       +                          N  +    GR    +D+ +  + 
Sbjct: 816 YMSNQVAFARE--------------------------NGYVETVLGRRRYLKDINSRNAI 849

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
           +     +               +Q  + DI+   M+N             ++L VHDE+V
Sbjct: 850 VRGAAERN---------AVNAPIQGSAADIIKLAMINIYNRFEEEGFKSKMLLQVHDELV 900

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +    +      ++   M +       +PL  E    + +
Sbjct: 901 FDAHKDELEIIKPIIKEEMENAFK--MEVPLDVEIGVGQNW 939


>gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
 gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1]
          Length = 948

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 214/700 (30%), Gaps = 162/700 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKE 59
           +  D ET     LT            ++  AF ++           D      + +VL+ 
Sbjct: 377 VCFDTETTGLNPLT----------AELVGIAFSWETGKGFYVPFPEDKNEAQELIEVLRP 426

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-AL 116
             EN ++  +  N  ++  VL    N+++   +   T++            +  + E  L
Sbjct: 427 FFENDNIEKIGQNLKYDIKVLAKY-NVEVK-GKLFDTMLAHYLINPDMRHNMDVLAETYL 484

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             +   + E   LI +                          EY   D  +T ++ +  E
Sbjct: 485 NYTPISITE---LIGK---------KGKNQLSMREVPLDKQTEYAVEDADITLQLKEHFE 532

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   +   G  +D    ++L++ ++ +   L++ +    
Sbjct: 533 KELGEANTQKLFNDIELPLLRVLAAMELEGINLDKDFLNSLSEELNTDIANLEKSIYEAA 592

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L   LF +  L      T+    +T + VLS   K      QV + R 
Sbjct: 593 G-EEFNIASPKQLGVILFEKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHKIIQQVLDFR- 650

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+     ++ L   ++       T      + TGR S      QN+P  +        
Sbjct: 651 GLSKLKSTYVDALPLQVDESTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGR---- 706

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   +   E   L+ AD + IE R++A ++ E+  ++
Sbjct: 707 ---------------------QVRKAFVPRDENHILLAADYSQIELRIIAALSKEETMIE 745

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ GED++ +T ++ FNV   +VT++QR+  K +   + Y            +   +  
Sbjct: 746 AFKNGEDIHASTASKVFNVPITEVTREQRSNAKTVNFGIIY-----GVSAFGLSNQTD-- 798

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                   +  + + + +   + ++   
Sbjct: 799 -------------------------------------LSRSEAKELIETYYATYPKLRAY 821

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            +E                                 N  +    GR    +D+ +  + +
Sbjct: 822 MSEQVDFARD--------------------------NGYVQTVLGRRRYLKDINSRNAVV 855

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                +               +Q  + DI+   M+N  K          ++L VHDE+V 
Sbjct: 856 RGAAERN---------AVNAPIQGSAADIIKIAMINIYKKLQTGAYKTKMLLQVHDELVF 906

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +    +      ++   M +       +PL  +      +
Sbjct: 907 DVYKPELEGLKNLIKTEMENAYE--LSVPLDVDLDIGANW 944


>gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
 gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217]
          Length = 948

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 98/704 (13%), Positives = 209/704 (29%), Gaps = 162/704 (23%)

Query: 1   MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MP 54
           M    +  D ET     L             ++  AF ++           +      + 
Sbjct: 372 MKQTSVCFDTETTDLDPL----------QAELVGIAFSWEKTKGFYVPFPSEKEEVQKLI 421

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112
           + L+   E  ++  +  N  ++  VL    ++++   +   T++            +  +
Sbjct: 422 EALRPFFEAEEIEKIGQNLKYDIKVLAKY-DVEVK-GKLFDTMIAHYLINPDMRHNMDVL 479

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E     +      +ELI +              K           EY   D  VT ++ 
Sbjct: 480 AETY--LNYTPVSIEELIGK---------KGKNQKSMADVPVDQQTEYAVEDADVTLQLK 528

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +  +               E  L  +   +   G  +D     +L++ ++ +   L++ +
Sbjct: 529 EHFQKELGEANTQKLFDEIEIPLVQVLADMELEGINLDQEFLGSLSEALNNDIASLEKSI 588

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
                    +    ++L   LF +  L      T     +T + VLS           V 
Sbjct: 589 YEEAG-EEFNIGSPKQLGEILFDKLKLVDKPKKTRTGQYSTAEDVLSYLAPDHEIVQHVL 647

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           + R   S+     ++ L   +N+      T      + TGR S      QN+P  +    
Sbjct: 648 DYR-GLSKLKSTYVDALPAQVNAKTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGR 706

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQ 396
                                     VR   +   E   L+ AD + IE R++A ++ E+
Sbjct: 707 -------------------------QVRKAFVPRNEDYVLLAADYSQIELRIIAALSQEE 741

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +KAF+ GED++ +T A+ FNV   +VT++QR+  K +   + Y            +  
Sbjct: 742 TMMKAFQEGEDIHASTAAKVFNVPIDEVTREQRSNAKTVNFGIIY-----GVSAFGLSNQ 796

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
            +                                          +  + +   + + + +
Sbjct: 797 TD---------------------------------------LTRSESKELIDTYYKTYPK 817

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +    +E      +                          N  +    GR    +D+ ++
Sbjct: 818 LRNYMSEQVDFARE--------------------------NGYVSTVLGRRRYLKDINSS 851

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
            + +     +               +Q  + DI+   M+              ++L VHD
Sbjct: 852 NAVVRGAAERN---------AVNAPIQGSAADIIKIAMIKIHHKLKDKGLRTKMLLQVHD 902

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V +   ++      ++   M         +PL  E      +
Sbjct: 903 ELVFDVYKSELEEVQELIKSEMEHAFK--LDVPLDVEVGLGDNW 944


>gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5]
          Length = 949

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 220/700 (31%), Gaps = 163/700 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           +  D ET     L             ++  AF ++                  + + L+ 
Sbjct: 379 VCFDTETTGLDPLV----------AELVGIAFSWEAGKGYYIPFPESKEEAQALIEELRP 428

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-AL 116
             ENT +  +  N  ++  VL    N+ +   +   T++            +  + E  L
Sbjct: 429 FFENTAIEKIGQNLKYDIKVLAKY-NVKVK-GKLFDTMLAHYLINPDMRHNMDVLAETYL 486

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             +   + E   LI +              K     +     EY   D  +T ++ +  E
Sbjct: 487 NYTPVSITE---LIGK---------KGKNQKSMRDVSVDDQTEYAVEDADITLQLKQHFE 534

Query: 177 PLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   +   G  +DV+   +L+  ++ +  +L  E+ +  
Sbjct: 535 KELDEAGTRKLFDDIEIPLLRVLAAMEVEGINLDVSFLQSLSGDLNADIERLTSEIFAEA 594

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L   LF +  L      T+    +T + VLS   K      +V + R 
Sbjct: 595 G-EEFNIGSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDYR- 652

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+     ++ L E +  DGR+        A+ TGR S      QN+P  +        
Sbjct: 653 GLSKLKSTYVDALPEQVAQDGRVHTDYMQTVAA-TGRLSSNNPNLQNIPIRTERGR---- 707

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   +   E   L+ AD + IE R++A ++ E+  ++
Sbjct: 708 ---------------------QVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQ 746

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  GED++ +T A+ FNV   +VT++QR+  K +   +                G++  
Sbjct: 747 AFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGII--------------YGVSAF 792

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             ++                                       + +   + + + ++   
Sbjct: 793 GLSNQTD------------------------------LSRGEAKELIDNYYKSYPKLRNY 822

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            +EL +   +                          N  +     R      + ++   +
Sbjct: 823 MSELVEFARE--------------------------NGYVKTVLDRRRYLNGINSSNGVV 856

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                +               +Q  + DI+   M+N  +          ++L VHDE+V 
Sbjct: 857 RGAAERN---------AVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVF 907

Query: 635 ETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + P+ +       +   M S    A  +PL  E    + +
Sbjct: 908 DVPNDELDAIKELIKTEMESAFKMA--VPLDVEVGLGQNW 945


>gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
 gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1]
          Length = 932

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 95/715 (13%), Positives = 194/715 (27%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    D+             ++  +   +         +H             
Sbjct: 346 YVAVDTETTGLDDMV----------AQLVGVSLCVEPGKACYIPLIHKARGSDDLFGSDD 395

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                       ++L   LE+  +  +  N  ++  +      L I +     T++L+ +
Sbjct: 396 LAEGQIPTEEALRLLTPMLEDPSILKIGQNMKYDSKIFAQ---LGINVAPIDDTMLLSYA 452

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  + E              L       +             +       +
Sbjct: 453 MHAGLHGHGMDTLSERY------------LSHTPIPIKPLLGTGKSAITFDKVPLADAVK 500

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  +++  +P   +          E+ L  +   +   G  VD      ++ 
Sbjct: 501 YAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVPVLAAMERSGVKVDRDTLSRMSN 560

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ ++  L      +    ++L   LF E GL      +T    T   VL  
Sbjct: 561 AFAQKMAGLEDDIYELAGRK-FNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLED 619

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    +V + R   S+      + L + +N D     T   +  + TGR +     
Sbjct: 620 LATEHDLPARVLDWRQ-LSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 678

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A  GK LV  D + IE
Sbjct: 679 LQNIPIRSEEGRR-------------------------IREAFVAEPGKALVALDYSQIE 713

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AF+ G D++  T +  F V   ++T D R   K +          
Sbjct: 714 LRILAHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAIN--------- 764

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 765 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 789

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    N+     ++                          +  +    G
Sbjct: 790 FIDRYFERFPGIRTYMNDTKAFAKE--------------------------HGFVQTLFG 823

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621
           R +   ++    S          R            +Q  + D++   M+          
Sbjct: 824 RKIHTPEI----SAKGPRAGFAQRAAINAP------IQGTAADVIRRAMIRMPDAIKDLP 873

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E     E +  +   H+M +   P     + L  +      +
Sbjct: 874 ATMLLQVHDELLFEVEKGAEDDLIAAARHVMENAADPVVKLDVKLDVDAGVGASW 928


>gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578]
          Length = 897

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 113/702 (16%), Positives = 196/702 (27%), Gaps = 165/702 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-------Q 55
            + +D ET     LT            ++  +   D+            V P       +
Sbjct: 328 VVAVDTETDGLDPLTC----------RLVGVSLAVDEGRACYVPLAAPDVRPLPADVVRE 377

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112
           VL   L +  V+ V  N  F+  VL+       P   +  T+V A           L  +
Sbjct: 378 VLTPLLASQKVSKVGQNLKFDYHVLRRWGVR--PEGPFFDTMVAAWLLESDAGRYNLDRL 435

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E           G   I      E                    G Y   D  +   + 
Sbjct: 436 AEKY--------LGWRTIHYKDVVEKGA-------SFETVPVAEAGVYAAEDADIALRLS 480

Query: 173 KRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           + L+               E  L  +   + + G  +D        + +D   + ++ E+
Sbjct: 481 RVLKERLEAGDLGRVFYEMEMPLLSILARMEEWGIGLDGEALSAFGRELDERISNIENEI 540

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
             L      +    ++L+  LF+E GL     T+   +T   VL       P A +V   
Sbjct: 541 FDLVGH-EFNVGSTKQLQEVLFVERGLPPVKKTKTGFSTDTSVLEELAAQDPVAAKVLEY 599

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++     ++ L   +N +     T      + TGR S      QN+P  +      
Sbjct: 600 R-SLTKLKNTYVDVLPGLVNPETGRLHTWFSQVGTATGRLSSKDPNLQNIPIKTEEGRR- 657

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +   G   + AD + IE  +LA ++G+    
Sbjct: 658 ------------------------IREAFVPQRGWWFLSADYSQIELVILAHLSGDPALC 693

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T +  F V P  VT +QR I K +                    G++ 
Sbjct: 694 RAFREGEDVHRATGSLLFGVPPETVTPEQRRIAKTINF--------------GVIYGMS- 738

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + E        ER   A+   ++ V  
Sbjct: 739 -----------------------------AFRLSRELGIPRKEAERFINAYFTTYAGVRA 769

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               + +   +  E G                             GR      + +    
Sbjct: 770 F---IERTIAEAEEKGYVTTL-----------------------FGRKRPLPYITSRN-- 801

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633
             T      R            +Q    DI+   M++             ++L VHDE++
Sbjct: 802 -KTQKTGAERIA------VNTPIQGSGADIIKLAMIDLDAQMRRMGLASRMILQVHDELI 854

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
            E P  +      L    M         +PL+ E    + + 
Sbjct: 855 FEVPPEELEVMKRLVRERMEGVVR--LSVPLRVEIGVGRNWG 894


>gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
 gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC
           23834]
          Length = 928

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 111/706 (15%), Positives = 206/706 (29%), Gaps = 166/706 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
            + ID ET S            A +  ++  +  F           H             
Sbjct: 350 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 399

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110
           +   LK  LEN  +  +  N  +++ V      + +        ++ +          L 
Sbjct: 400 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 457

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E           G E I      E+      +       A     EY   D      
Sbjct: 458 ELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIEQATEYAAQDADFALR 505

Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +   L               E  +  +   +   G  +D A     +  +  E  KL+QE
Sbjct: 506 LDAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQE 565

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQ 275
             +       +    ++L+  LF + G+  + L +      +T + VL       P    
Sbjct: 566 AYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKI 624

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  + 
Sbjct: 625 ILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRTA 682

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR    A +G  +V AD + IE R++A ++G
Sbjct: 683 EGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLSG 717

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF+ GED++  T A  F +AP  V+ +QR   K +                   
Sbjct: 718 DKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTIN--------------FGLI 763

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+     A  +  ++                                 +     +  ++
Sbjct: 764 YGMGQYGLAKSLGIDNLS------------------------------AKTFIDRYFARY 793

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V+E      +                                 +    GR L   D+ 
Sbjct: 794 PGVAEYMQRTKEQA--------------------------AAQGYVETLFGRRLYLPDIR 827

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
           N  +          R            +Q  + D++   M++ ++          +++ V
Sbjct: 828 NKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQV 878

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E P+ +       L  +M         +PL AE      +
Sbjct: 879 HDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 924


>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306]
          Length = 934

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 98/705 (13%), Positives = 186/705 (26%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   L             +I  +   +          H               
Sbjct: 359 AFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGVPVQLDRTQAL 408

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  V  +  +  ++  V++    +++  +    TL+ +           + +
Sbjct: 409 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDMDS 466

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +  P  + +      Y   D  +T  +
Sbjct: 467 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLEDATRYAAEDADITLRL 514

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   I   G CVD A        +        Q
Sbjct: 515 HRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQRADLSKRMLAAQQ 574

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 575 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 633

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 634 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 691

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 692 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 726

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++  T A  F      V+ D+R   K +                    
Sbjct: 727 PGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINF--------------GLMY 772

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     +  ++ 
Sbjct: 773 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 802

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +      Q                                 +    GR L    +  
Sbjct: 803 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 834

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
             +          R            +Q  + DI+   M+              ++L VH
Sbjct: 835 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMILQVH 887

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E          S +   M         +PL  +      +
Sbjct: 888 DELVFEADIDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 930


>gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1]
 gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1]
          Length = 929

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 107/715 (14%), Positives = 204/715 (28%), Gaps = 177/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            +  D ET S  ++T            ++  +   +         +H             
Sbjct: 344 EVAFDTETTSLNEMT----------AELVGVSLCIEPGAACYIPLLHRGGGDDLFADTSL 393

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                      ++L+  LE+  V  VA N+ ++  VL       + +     T++L+ + 
Sbjct: 394 AEGQIPFDDAMEILQPMLEDRSVMKVAQNAKYDVKVLANY---GVEVAPIDDTMLLSYAL 450

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E            K LI                    R        Y
Sbjct: 451 HAGLHNHGMDGLAERY--LGHTPLPIKSLI----------GSGKSQITFDRVPIADAAPY 498

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T    K  +P   +          E+ L  +   +   G  VD  +   ++  
Sbjct: 499 AAEDADITLRFHKLFKPKLHQVGVTKVYERLERPLVPVLARMERSGIKVDKDVLSRMSNA 558

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSN 266
              +   L+ E+  L      +     +L   LF + GL           +T   +L   
Sbjct: 559 FAQKMAGLEAEIHELAG-ESFNVGSPAQLGEILFDKMGLQGGKKGKTGKYSTGADILEDL 617

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325
                   +V + R   S+      + L + +N+D GR+  +    GA+ TGR +     
Sbjct: 618 ATEHDLPGRVLDWRQ-LSKLKSTYTDALQDHINADTGRVHTSYSIAGAN-TGRLASTDPN 675

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A  GK LV  D + IE
Sbjct: 676 LQNIPIRSEEGRR-------------------------IREAFVAEPGKVLVALDYSQIE 710

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +AG      AF+ G+D++  T +  FNV   ++T D R   K +          
Sbjct: 711 LRILAHIAGIDALKDAFKDGQDIHAATASEMFNVPLEEMTPDVRRQAKAIN--------- 761

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 762 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 786

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    ++  +  ++                          NL +    G
Sbjct: 787 FIDRYFERFPGIRTYMDDTKKFAKE--------------------------NLYVQTLFG 820

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621
           R +   ++               R            +Q  + DI+   M+    A     
Sbjct: 821 RKIHTPEINAK----GPGAGFAGRAAINAP------IQGTAADIIRRAMIRMEDAIEGIP 870

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
             ++L VHDE+V E  +       +    +M      A    +P+  +  + + +
Sbjct: 871 AKMLLQVHDELVFEVDEDATDTLIARAREVMEGAADPAVHLSVPITVDAGQGETW 925


>gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
 gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2]
          Length = 907

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 103/705 (14%), Positives = 197/705 (27%), Gaps = 164/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + +D ET                D  ++  +F    H        H            
Sbjct: 330 DLVCLDTETTGLD----------VMDARLVGMSFAITPHEAAYLPLAHRYPGVPDQLDLD 379

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
                L+  LE+     +  N  +++ +      + +       TL+ +       +   
Sbjct: 380 ATLARLRPWLESEQHKKLGQNLKYDKHIFANH-GIALRGIS-DDTLLESYVLESHKSHDM 437

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              AL+    K              E       +     +    +   Y   D  +T ++
Sbjct: 438 DSLALRHLGVKTIS----------YEEVAGRGAKQICFDQVDLDIATRYAAEDADITLQL 487

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E     +   +   G  +D  L H  +  + V+   L+ 
Sbjct: 488 HQSLAPEITGKTGLQHVYRDIELPAMQVLFVMERNGVLLDANLLHVQSHELGVKLIALEA 547

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
                      +    ++++  LF +  L ++  T +    T + VL       P    +
Sbjct: 548 RAHE-AAEQPFNLNSPKQIQEILFDKLKLPVKKKTPSGAPSTDEEVLQELALDYPLPKIL 606

Query: 277 FNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L + +N + GR+  +     A  TGR +      QN+P  S  
Sbjct: 607 LEYR-GMAKLKSTYTDKLPKMVNRATGRVHTSYSQAVA-VTGRLASSDPNLQNIPIRSAE 664

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G  +V AD + IE R++A ++G+
Sbjct: 665 GRR-------------------------IREAFIAPSGSCIVAADYSQIELRIMAHLSGD 699

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AF   ED++  T A  F   P  VT +Q                           
Sbjct: 700 AGLLQAFAKNEDVHRATAAEIFMTTPVDVTTEQ--------------------------- 732

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                              +    NF      +    A +      A +     +  ++ 
Sbjct: 733 -----------------RRYAKVINFGLIYGMSAFGLAKQLGIERGAAQAYIARYFARYP 775

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +  +   +  +Q                             +    GR L   ++ +
Sbjct: 776 GVRDYMDSTREQAKQ--------------------------QGYVETVFGRRLWLPEINS 809

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
           + +          R            +Q  + D++   M+         K    +++ VH
Sbjct: 810 SNAMKRQ---GAERAAINAP------MQGTAADLIKLAMIQVQGWLETEKLKTRLIMQVH 860

Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E PD +       L  LM         +PL  E    K +
Sbjct: 861 DELVLEVPDDELSLIKASLPGLMCHVA--NLNVPLLVEVGSGKNW 903


>gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1]
          Length = 962

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 100/701 (14%), Positives = 204/701 (29%), Gaps = 160/701 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLK 58
            +  D ET                +  ++  +F           C  D      +    +
Sbjct: 388 EISFDTETTGLDP----------NEAELVGLSFCITKGEAYYVPCPADRNECIQLLNNFQ 437

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAV-GEA 115
               N  +T V  N  ++  +LK     ++       T++           ++  +  + 
Sbjct: 438 PLFNNASITWVGQNIKYDLLMLKWY-GFELQ-GNIFDTMLAHYVIEPDGKSSMDLLSAKF 495

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L      + E   LI +                          EY   D  +T ++    
Sbjct: 496 LGYQPVSITE---LIGK---------KGKGQGNMRDIEIEKIKEYAAEDADITLQLKNVF 543

Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            PL  KEQ           L  +   +   G  +D       + ++  +  + +Q +   
Sbjct: 544 LPLIKKEQVEKVFAEVENPLVKVLTNMEFEGIRIDEQFLKDYSIVLQKDAMEFEQSVYEQ 603

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    ++L   LF +  L  +   T+T    T + VL+           + + R
Sbjct: 604 AGVK-FNLASPKQLGEVLFDKMKLDPKAKKTKTGQYATGEDVLAKLANQHKICNDILSFR 662

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++     ++ L + +NS      T      + TGR S      QN+P  +    E  
Sbjct: 663 -ELTKLKNTYVDALPQLINSKTGRVHTSYAQAVAVTGRLSSTNPNLQNIPVRTERGRE-- 719

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  +R   I   E   LV AD + IE R++A ++ +    
Sbjct: 720 -----------------------IRKAFIPRDENHVLVSADYSQIELRIVAAISADVNMC 756

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+TG+D++  T A+ FNV  ++VTK+ R   K +   +                    
Sbjct: 757 EAFKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSVNFGII------------------- 797

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                      +     A       T  + +   ++++   + +
Sbjct: 798 -------------------------YGQGAFGLADNLGISRTEAKAIIDNYKKQFPNIQQ 832

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             +      ++T                            +    GR    +D+ +    
Sbjct: 833 YMDNTINFAKET--------------------------GYVETLMGRKRWLKDINSANF- 865

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
             T      R            +Q  + D++   M+    A         ++L VHDE+V
Sbjct: 866 --TVRGFAERNAINSP------IQGTAADMIKLAMIKIDAAFKAHHFKSKMLLQVHDELV 917

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +    +      ++   M    +    +P  AE  + + +
Sbjct: 918 FDVLKEELEKVKPVILDCMQHALALPNDVPTNAEIGDGENW 958


>gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C]
          Length = 968

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 100/715 (13%), Positives = 211/715 (29%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
               D ET S   +             ++ F+              H             
Sbjct: 380 YFSFDTETTSLNPM----------QAKLVGFSLALQPGKAAYVPLEHVAEEDNLLGGGRI 429

Query: 50  -----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN- 103
                      +LK  LEN  V  +  N  ++  V+K     +I +  +  T++L+ +  
Sbjct: 430 VPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQH---NIVMCSFDDTMLLSYALE 486

Query: 104 --GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G + I+     +       +     R   +    Y 
Sbjct: 487 AGISTHGMDVLSERW--------LGHKPISY----KDLTHSRRKIVSFARVDLKQATLYA 534

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  +T  +++ L+P              ++ L  +   + +RG  VD  +   L+  +
Sbjct: 535 AEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGEL 594

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK 267
                 L +E+  L      +    ++L   LF + GL     T++    T  + L    
Sbjct: 595 AQTVLNLGEEIYQLVG-EKFNIASPKQLGDILFGKMGLPGGTKTKSGQWSTSAQTLEELA 653

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +        T   L  + TGR S      Q
Sbjct: 654 AEGHILPRKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLATTLTGRLSSSEPNLQ 713

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  +AS+G  L+ AD + IE R
Sbjct: 714 NIPVRTAEGRK-------------------------IRAAFVASKGHLLLSADYSQIELR 748

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +A      +AF  G+D++  T ++ F VA   +T + R   K +            
Sbjct: 749 ILAHVADITALKEAFAKGQDIHAMTASQMFGVAVEGMTSEIRRRAKAINF---------- 798

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A                                            
Sbjct: 799 ----GIIYGISPFGLASQ------------------------------LGISRKEASDYI 824

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +                                    +   +    GR 
Sbjct: 825 QLYFERFPGIEDYMERTKIFAR--------------------------HYGYVETIFGRR 858

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
           + Y ++  ++           R            +Q  + DI+   M+    A       
Sbjct: 859 IHYPEIKTDKP---QIRSFNERAAINAP------IQGSAADIIRRAMIQMENALEKERLS 909

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P ++ +    ++  +M +   P+ +  +PL+ +   ++ +
Sbjct: 910 AKMLLQVHDELIFEVPKSESKKTTILIKKVMENATMPALSLSVPLEVKVIAAQNW 964


>gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4]
 gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4]
          Length = 917

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/703 (16%), Positives = 203/703 (28%), Gaps = 166/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +T            ++  +F  +          H             + 
Sbjct: 343 AFDTETTSLDPMT----------ARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDDVL 392

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
             LK  LE  D   V  +  ++  VL      DI ++     TL+ +             
Sbjct: 393 ARLKPWLEAADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESYVLESHRTHDMDS 449

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+    K            K E       +       A      Y   D  +T ++  
Sbjct: 450 LALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALDQAAAYAAEDADITLQLHH 499

Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  +  + + +   G  +D AL H  +  +     +L+ + 
Sbjct: 500 VLYPQIAREAGLERVYREIEMPVSLVLRKMERTGVLIDDALLHAQSNEIATRLIELEGQA 559

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    +++    F +  L +   T +    T + VL    +  P    +  
Sbjct: 560 YELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 618

Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L   +N   GR+        A  TGR +      QN+P  +    
Sbjct: 619 HR-GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNEPNLQNIPVRTAEGR 676

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IAS G ++V AD + IE R++A ++G+  
Sbjct: 677 R-------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDAS 711

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L+AF  GED++  T A  F V P +V  DQR I KV+                    G+
Sbjct: 712 LLRAFAHGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGM 757

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A        A +     +  ++  V
Sbjct: 758 S------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGV 787

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           ++   +   A +                              +    GR L   ++    
Sbjct: 788 AQYMEDTRAAAKD--------------------------QGYVETVFGRRLWLPEINGGN 821

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
                      R            +Q  + D++   M+         +    +++ VHDE
Sbjct: 822 GPRRQA---AERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDE 872

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E PD +       L  +M         +PL AE      +
Sbjct: 873 LVLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
 gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2]
          Length = 941

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 117/698 (16%), Positives = 216/698 (30%), Gaps = 155/698 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + +D ET S  ++             ++  +F             HD            +
Sbjct: 367 VAVDTETTSLDEMR----------AQIVGVSFSVTPGEAAYIPLTHDYPSAPEQLPLDEV 416

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111
              LK  LEN     +  N  ++R V      +++  +    T++ +    +  P  L +
Sbjct: 417 LARLKPWLENPARPKLGQNIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVTKPHGLAS 474

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E           G+  I      E            ++       EY   D   T ++
Sbjct: 475 LAERH--------VGRSGINY----EDLCGKGVHQIKFNQVDIARAAEYSCEDSDQTLDV 522

Query: 172 FKRLEPLSSKEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L P     ++L ++ Q           I   G  +D  +    +  +     +L+ E
Sbjct: 523 HRVLWPQLQANEKLLFIYQLEMQSSETLYRIERNGVLIDAPMLARQSHELGQRLLQLETE 582

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L    F + G+ +   T +    T + VL    +  P   ++ 
Sbjct: 583 AYEMAGQP-FNLGSPKQLAEIFFDKLGMKVVKKTPSGARSTDEDVLEKLAEDHPLPAKLL 641

Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            +R   S+      + L +  N   GR+        A  TGR S      QN+P  +   
Sbjct: 642 EHR-SLSKLKGTYTDKLAQLANPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPVKTAEG 699

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      VR   +A  G  +  AD + IE R++A ++G++
Sbjct: 700 RR-------------------------VREAFVAPAGSVIASADYSQIELRIMAHISGDE 734

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G D++  T A  F VA  QV+ +QR   KV+   L Y               
Sbjct: 735 SLLHAFTAGLDVHRATAAEVFGVALEQVSSEQRRYAKVINFGLIYGMS-----SFGLAKN 789

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L + T A     +   + +   +++    ++   E    +   G          R     
Sbjct: 790 LGIETKAAAAYIDRYFQRYPGVKHYMDSTRQLAKEQGYVETVFGR---------RLLLPE 840

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           ++                                            P+G        G  
Sbjct: 841 INS-------------------------------------------PNGPRRA----GAE 853

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           R+ +N   +          KL+   VQ          +++A K G  +++ VHDE+V E 
Sbjct: 854 RAAINAPMQG---TAADLIKLSMVKVQ---------QVLDAEKRGTKMIMQVHDELVFEV 901

Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           P+ +       +  LM         +PL AE      +
Sbjct: 902 PEAEVEWVRTEIPRLMAGVAE--LKVPLLAEIGFGPNW 937


>gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
 gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3]
          Length = 892

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 111/705 (15%), Positives = 205/705 (29%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET +   +             ++  +   +          H             + 
Sbjct: 317 AFDTETTALDPMK----------ARLVGISLALEPDEAFYIPVGHAYEGAPVQLDRDAVL 366

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++L  A ENT +T +  N  ++ TVL  C    I       T++ A           L  
Sbjct: 367 RILAPAFENTKITKIGQNVKYDWTVLSRC-GFKID-GPVFDTMIAAYLLNPTRRSYGLDR 424

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                +I+     +         K            Y   D  +T  +
Sbjct: 425 LAADY--------LNHRMISY----QDVTGTGKNAKCFSAVPLEEAIPYAAEDADITFSL 472

Query: 172 FKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + LE    +          E  L  +   +   G  VD      L++ ++ +  KL+ E
Sbjct: 473 HRLLEKELKQGGLFELLETIEMPLVPVLMHMEMAGVAVDREALAALSKELEGQLEKLEGE 532

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHL-----EDLTETTCQRVLSSNKKLTPQAIQV 276
           +  L      +    ++L   LF + GL       +    +T   VL++          +
Sbjct: 533 IYGLAG-ETFNINSPQQLGVILFEKLGLPTQKKTKKKTGYSTDADVLTTLADHHELPALL 591

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
             +R   ++      + L E +  + GR+  +     A+ TGR S      QN+P  +  
Sbjct: 592 LRHR-TLAKLKSTYADALAELILPETGRIHTSFNQ-TATATGRLSSTDPNLQNIPIRTEE 649

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +   G   V AD + +E R+LA  + +
Sbjct: 650 GR-------------------------QIRKAFVPRPGWTFVSADYSQVELRILAHYSQD 684

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++AFE  ED++  T +  F + P  +T+D R   K +                    
Sbjct: 685 PILIEAFENDEDIHTRTASEVFQLFPEMITEDVRRQAKAINF--------------GIVY 730

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +    ++  ++S
Sbjct: 731 GISPFGL------------------------------ARDLGISQKMAKNYMDSYFSRYS 760

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           RV E  ++      +T +                               GR     D+ +
Sbjct: 761 RVKEFMDKAIADARETGQTR--------------------------TMFGRIRYLPDIDS 794

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVH 629
                 T      R            +Q  + DI+   M+   KA         ++L+VH
Sbjct: 795 PN---RTLQGYAERAAINTP------IQGTAADIMKLAMIATEKALAKEKLVSVMLLSVH 845

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           DEIV E P  +    S L   +M +    A    LK    +   +
Sbjct: 846 DEIVLECPPDEVKTVSALVADIMENVCDLAVR--LKVNVAQGSNW 888


>gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87]
 gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87]
          Length = 941

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 98/702 (13%), Positives = 211/702 (30%), Gaps = 162/702 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD----CVHDPVMPQVL 57
            ++  D ET S   L          +  ++  AF ++                  + ++L
Sbjct: 368 KSVCFDTETTSLNPL----------EAQLVGIAFSWEGGKGYYLPFEDNIEKTQQLIELL 417

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE- 114
           +   E+ ++  +  N  ++  VL     + +       T++            +  + E 
Sbjct: 418 RPFFESPEIEKIGQNLKYDIKVLDKY-GIKVE-GPTFDTMIAHYLINPDMRHNMDILAET 475

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L  + Q + E   LI +              K           EY   D  +T ++ + 
Sbjct: 476 YLNYTPQPISE---LIGK---------KGKNQKSMRDVPLAEQTEYAAEDADITFQLKEF 523

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            E               E  L  +   +   G  +D+     L++ +D +  +L+ ++  
Sbjct: 524 FEKELDEAKTRKLFNEIEMPLVEVLADMEIEGINLDLDFLKKLSEALDRDIKELEAKIYE 583

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
                       ++L   LF +  L      T+    +T + VLS           V + 
Sbjct: 584 AAG-EEFKISSPKQLGIILFEKLALVKKPKKTKTGQYSTSEDVLSYLAPEHEIVQHVLDY 642

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    +     ++ L   +        T      + TGR S      QN+P  +      
Sbjct: 643 R-GLVKLQNTYVDALPGQVEKSSGRVHTDYVQTIAATGRLSSNNPNLQNIPIRTERGR-- 699

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                                   VR   I   +   L+ AD + IE R++A ++ E+  
Sbjct: 700 -----------------------QVRKAFIPRSDDYVLLAADYSQIELRIIAALSEEETM 736

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +KAF+ GED++ +T ++ FNV   +VT++QR+  K +   + Y            +   +
Sbjct: 737 IKAFKDGEDIHASTASQVFNVPLEEVTREQRSNAKTVNFGIIY-----GVSAFGLSNQTS 791

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                                     +  + +   + + + ++S
Sbjct: 792 ---------------------------------------LSRSESKELIDTYYKTYPKLS 812

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
               +      +                          +  +    GR    +D+ +  +
Sbjct: 813 NYIADQVAYARE--------------------------HGYVSTILGRRRYLKDINSQNA 846

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
            +     +               +Q  + DI+   M+N  K          ++L VHDE+
Sbjct: 847 VVRGAAERN---------AVNAPIQGSAADIIKIAMINIHKKLGEEKLQTKMLLQVHDEL 897

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V +    +       +   M +   +   +PL  +    + +
Sbjct: 898 VFDVYKPELDQVKKLIKSEMENA--YQLNVPLDVDLGVGQDW 937


>gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 933

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 85/714 (11%), Positives = 186/714 (26%), Gaps = 176/714 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL------ 57
           + +D ET    ++             ++  +   +          H       L      
Sbjct: 348 VAVDTETTGLNEMI----------ADLVGISLCIEPGEACYIPLTHRESATDDLFGSDAL 397

Query: 58  --------------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                         K   E++ +  +  N  ++  +        + +     T++++ + 
Sbjct: 398 AEGQMPLDEALTLLKPVFEDSSILKIGQNMKYDAKIFARY---GVNVVPIDDTMLMSYAM 454

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E              L       +             +        Y
Sbjct: 455 HGGKHGHGMDTLSERY------------LSHTPIPIKPLLGSGKSAITFDKVPIDEATAY 502

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  ++K  +P   +          E+ L  +   +   G  VD  +   ++  
Sbjct: 503 AAEDADITLRLWKLFKPQLHQVQVTTVYETLERPLVPVLAEMEMNGIKVDRDVLSRMSNA 562

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSN 266
              +   L+ E+  L      +     +L   LF + GL           +T   +L   
Sbjct: 563 FAQKMAGLEAEIHELAG-ENFNVGSPAQLGEILFDKMGLEGGKKGKTGKYSTGADILEDL 621

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   +V + R   S+      + L   +N D     T   +  + TGR +      
Sbjct: 622 ATEHELPRRVLDWRQ-LSKLKSTYTDALQTHINPDTGRVHTSYSITGANTGRLASTDPNL 680

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +                              +R   IA  G  LV  D + IE 
Sbjct: 681 QNIPVRTEEGRR-------------------------IRGAFIAEPGNVLVSLDYSQIEL 715

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +A      +AF  G D++  T +  F+V   ++T + R   K +           
Sbjct: 716 RILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRQAKAIN---------- 765

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A          +  
Sbjct: 766 ----FGVIYGIS------------------------------GFGLARNLRIPRAEAQGF 791

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + ++   +    ++     ++                          +  +    GR
Sbjct: 792 IDRYFERFPGIRRYMDDTVAFAKE--------------------------HGYVQTLFGR 825

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622
            +   ++               R            +Q  + D++   M+           
Sbjct: 826 KIHTPEINAK----GPHAGFSRRAAINAP------IQGTAADVIRRAMVRMPGAINGLPA 875

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E  +        +   +M     P+    + L A+  +   +
Sbjct: 876 KMLLQVHDELLFEVAEGAVDETIGIARDVMEGAADPAVKLDIKLVADAGQGANW 929


>gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3]
          Length = 925

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 102/715 (14%), Positives = 210/715 (29%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
               D ET S   +             +I F+              H             
Sbjct: 337 YFSFDTETTSLDPM----------QAKLIGFSLALQPGKAAYIPLEHVAGEDDLWGDRRI 386

Query: 50  -----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN- 103
                      +LK  LEN  +  +  N  ++  V+K     +I +  +  T++L+ +  
Sbjct: 387 VQQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQY---NIVMRSFDDTMLLSYALE 443

Query: 104 --GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G + I      +       +     +   +    Y 
Sbjct: 444 AGISTHGMDILSERW--------LGHKSITY----KDLTYNGRKVNSFAQIDLKQATLYA 491

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  +T  +++ L+P              ++ L  +   + +RG  VD  +   L+  +
Sbjct: 492 AEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGEL 551

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                 L++E+  L      +    ++L   LF + GL     T+    +T  + L    
Sbjct: 552 AQAALNLEEEIYQLVG-EKFNIASPKQLGDILFGKIGLPGGSKTKNGQWSTSAQTLEELA 610

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   N  + ++      + L   +        T   L  + TGR S      Q
Sbjct: 611 AEGHILPRKIVNWRQLTKLKSTYTDALPSYILPKTGRVHTNYSLATTSTGRLSSSEPNLQ 670

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IAS+G  L+ AD + IE R
Sbjct: 671 NIPVRTAEGRK-------------------------IRTAFIASKGYLLLSADYSQIELR 705

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA  A      +AF  G+D++  T A+ F VA   ++ + R   K +            
Sbjct: 706 VLAHFADITALKEAFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINF---------- 755

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+                                           
Sbjct: 756 ----GIIYGISPFGLANQ------------------------------LGISRKEASHYI 781

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +   +                                ++  +    GR 
Sbjct: 782 QLYFERFPGIKDYMEKTKMFAR--------------------------HHGYVETIFGRR 815

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAG 621
           +   ++               R            +Q  + DI+   M+         K  
Sbjct: 816 IHCPEIKAVNP---QVRAFNERAAINAP------IQGSAADIIRRAMIQMENALEKEKLS 866

Query: 622 YDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P ++    A ++  +M +   P+ +  +PL+ +   ++ +
Sbjct: 867 AKMLLQVHDELIFEVPKSESTKTAILVRKVMENATMPALSLSVPLEVKVITAQNW 921


>gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup]
 gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup]
          Length = 969

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 101/714 (14%), Positives = 214/714 (29%), Gaps = 175/714 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV------------ 52
             + ET S   +             ++ F+              H               
Sbjct: 382 AFNTETTSLDPM----------QAKLVGFSLALQPEKAAYIPLEHFDEGEEDLLRGGHIA 431

Query: 53  -------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG- 104
                     +LK  LE++ V  +  N  ++  V+K     DI I  +  T++L+ +   
Sbjct: 432 SQIETRKALALLKPILEDSSVLKIGQNIKYDWLVMKQY---DIIISSFDDTMLLSYAFDA 488

Query: 105 --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
             L   +  + E       K    K+L               +     +   +    Y  
Sbjct: 489 GILTHNMDDLSER--WLKHKPISYKDLTHN----------GKKITSFAQVDLKQATLYAA 536

Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
               +T  +++ L+P              ++ L  +   + +RG  +D  +   L+  + 
Sbjct: 537 ERADITLRLWQVLKPQLVARGMTKIYERLDRPLVEVLARMEERGILIDRQILLRLSGELA 596

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268
                L++E+         +    ++L   LF + GL     T+    +T  + L     
Sbjct: 597 QAALILEEEIYKQ-ADEKFNLASPKQLGDILFGKMGLSGGAKTKGGQWSTSAQTLEELAA 655

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                 +      + ++      + L   + S      T   L  + TGR S      QN
Sbjct: 656 EGHVLPRKIIEWRQLAKLKSTYTDALPSYIFSKTGRVHTNYSLAITSTGRLSSSEPNLQN 715

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +    +                         +R+  IA +G  L+ AD + IE R+
Sbjct: 716 IPVRTAEGRK-------------------------IRTAFIAPKGHVLLSADYSQIELRI 750

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A  +   +AF  G D++  T ++ F VA   +  D R   K +             
Sbjct: 751 LAHIADIKALKEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAIN------------ 798

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G++                                  A +         R  +
Sbjct: 799 --FGIIYGIS------------------------------AFGLANQLGISRQEAGRYIQ 826

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            + ++   + +   +      +                          N  +    GR +
Sbjct: 827 LYFERFPGIKDYMEKTKIFARE--------------------------NGYVETIFGRRI 860

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGY 622
            Y ++      + +      R            +Q  + DI+   M+         K   
Sbjct: 861 HYPEIKAKNVKIRSL---NERAAINAP------IQGSAADIIRRAMIQMENALKEEKLSA 911

Query: 623 DIVLTVHDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E P+ + +   +++ ++M +   P  +  +PL+ +   ++ +
Sbjct: 912 KMLLQVHDELIFEVPEEESKKTMAVVKNVMENATMPILSLSVPLEVKVMTAQNW 965


>gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
 gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865]
          Length = 933

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 97/705 (13%), Positives = 187/705 (26%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   L             +I  +   +          H               
Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGAPAQLERRQAL 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  V  +  +  ++  V++    + +  +    TL+ +           + +
Sbjct: 408 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GIALAGYS-DDTLLQSFVLNSGSARHDMDS 465

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +  P  + +      Y   D  +T  +
Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLDDATRYAAEDADITLRL 513

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G CVD A     +  +        Q
Sbjct: 514 HHVLGPKLAAEPGLERVYREIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 574 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 632

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 633 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 691 GRR-------------------------IRRAFVAPAGRKLIACDYSQIELRIMAHLSGD 725

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++  T A  F      V+ D+R   K +                    
Sbjct: 726 PGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------GLMY 771

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     +  ++ 
Sbjct: 772 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 801

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +      Q                                 +    GR L    +  
Sbjct: 802 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 833

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
             +          R            +Q  + DI+   M++             ++L VH
Sbjct: 834 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVSVDAWIADHAEHALMILQVH 886

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +   M++       +PL  +      +
Sbjct: 887 DELVFEADADFVDTLLGEVTARMSAAAE--LRVPLVVDSGVGDNW 929


>gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703]
 gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703]
          Length = 938

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 113/715 (15%), Positives = 206/715 (28%), Gaps = 175/715 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + ID ET S            A +  ++  +  F           H            
Sbjct: 352 DKIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--SA 108
            +   LK  LEN  +  +  N  +++ V       DI ++     +++ +          
Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY---DIALNGIAGDSMLASYIIESHLGHG 458

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L  + E           G E I      E+      +       A     EY   D    
Sbjct: 459 LDELSERW--------LGLETITY----ESLCGKGAKQISFADVAIVQATEYAAQDADFA 506

Query: 169 REIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L               E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDDKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQA 273
           QE  +       +    ++L+  LF + G+  + L +      +T + VL       P  
Sbjct: 567 QEAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  
Sbjct: 626 KIILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIR 683

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              VR    A +G  +V AD + IE R++A +
Sbjct: 684 TAEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHL 718

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  + AF+ GED++  T A  F  AP  V+ +QR   K +                 
Sbjct: 719 SGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINF--------------G 764

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+     A  +  ++                                 +     +  
Sbjct: 765 LIYGMGQYGLAKSLSIDNIS------------------------------AKNFIDRYFA 794

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++  V+E      +                                 +    GR L   D
Sbjct: 795 RYPGVAEYMQRTKEQA--------------------------AAQGFVETLFGRRLYLPD 828

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------------TK 619
           + N  +          R            +Q  + D++   M++                
Sbjct: 829 IHNKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSCWLSECEASPWDDL 879

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +++ VHDE+V E P+ +       L  +M         +PL AE      +
Sbjct: 880 LQSKLIMQVHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 934


>gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E]
 gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 965

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 102/731 (13%), Positives = 208/731 (28%), Gaps = 192/731 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET +   +             ++  +F  ++         H   +        
Sbjct: 364 KLVAVDTETNALDPML----------AELVGISFALENGEACYIPLAHVHQVAAQAENAQ 413

Query: 54  ---------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
                                         LK  LEN ++  +  N  ++ T+      +
Sbjct: 414 GDLFAESEQSSESRWEPVVGQLNKAECLSQLKPLLENPEIKKIGQNIKYDLTIFANN-GI 472

Query: 87  DIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           ++       T++ +          +  + E           G   IA     E       
Sbjct: 473 NMQ-GVTFDTMLESYVLNSTGRHNMDDLAERY--------LGHHTIAF----EDIAGKGK 519

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWYLDQTIN 193
                 +   +   EY   D  VT ++ + L                 E  L  +   I 
Sbjct: 520 NQLTFDQIELKKAAEYAAEDADVTMKLHQTLWREVAQSPELVKLYQEMELPLVSVLSRIE 579

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D       ++    + T L+ +   L      +    ++L+  LF + GL +  
Sbjct: 580 RNGVLIDSRALLAQSKEFSQKLTALENKAHELAGQH-FNLASTKQLQEILFDKLGLPVLK 638

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTL 308
            T     +T + VL           ++       S+      + L + +N   GR+  + 
Sbjct: 639 KTPKGAPSTNEEVLEELAYEHELP-KLLVEHRGLSKLKSTYTDKLPQMVNRKTGRVHTSY 697

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P  +                              +R   
Sbjct: 698 HQAV-TATGRLSSSDPNLQNIPVRNEEGRR-------------------------IRQAF 731

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA +G K++ AD + IE R++A ++ ++    AF  G+D++ +T A  F +A   VT +Q
Sbjct: 732 IARKGFKVIAADYSQIELRIMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALENVTAEQ 791

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++    +                         
Sbjct: 792 RRSAKAINF--------------GLIYGMSSFGLSRQ----------------------- 814

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          +R    + Q++  V      + +  +                   
Sbjct: 815 -------LGIARGDAQRYMDLYFQRYPGVQTFMTNIREKAKS------------------ 849

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                      +    GR L   D+ +  +      +   R            +Q  + D
Sbjct: 850 --------QGYVETLFGRRLYLPDIQSANAMRR---KAAERVAINAP------MQGTAAD 892

Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLP 662
           I+   M++  KA        +++ VHDE+V E  +      ++++  LM +       +P
Sbjct: 893 IIKRAMIDIDKAITDDPDILMIMQVHDELVFEVKEDKIEHYSALIKSLMENAAQ--LHVP 950

Query: 663 LKAEGYESKRY 673
           L  +      +
Sbjct: 951 LIVDVGVGDNW 961


>gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238]
 gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238]
          Length = 928

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 99/715 (13%), Positives = 193/715 (26%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET S  ++             ++  +              H             
Sbjct: 342 YVAVDTETTSLNEMR----------AELVGVSLCVMAGQACYIPLTHKGGAADDLFGDDA 391

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                        +LK  LE+  +  +  N  ++  + K    + I +     T++++ +
Sbjct: 392 LAEGQMDFEDCLAILKPMLEDDSILKIGQNMKYDAKIFKR---VGITVDPIDDTMLMSYA 448

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   ++  + E           G   I      +             R       +
Sbjct: 449 MNAGLNRHSMDVLSEQY--------LGHTPIPI----KPLLGAGKSAITFDRVPVEEAVK 496

Query: 160 YCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  +++ L+P              E+ L  +   +   G  VD      ++ 
Sbjct: 497 YAAEDADITLRLWQVLKPQLHSKQVTSVYETMERPLVPVLAKMEMYGIKVDRDTLSRMSN 556

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSS 265
               +   L+ EL  L  G   +     ++   LF + GL            T   +L  
Sbjct: 557 AFAQKMAGLEDELYELAGGK-FNVGSPAQVGEILFDQMGLEGGKKGKTGKYATGADILED 615

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                     V + R   S+      + L   +NS+     T   +  + TGR S     
Sbjct: 616 LATEHGFPGLVLDWRQ-LSKLKSTYTDALQTHINSETGRVHTSYSITGANTGRLSSTDPN 674

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +    +                         +R   IA EGK LV  D + IE
Sbjct: 675 LQNIPIRTDEGRK-------------------------IREAFIADEGKVLVALDYSQIE 709

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AF  G D++  T +  FNV   ++T D R   K +          
Sbjct: 710 LRILAHVANIDALKQAFRDGHDIHAMTASEMFNVPLDEMTSDVRRQAKAIN--------- 760

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 761 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 785

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    ++     ++                          +  +    G
Sbjct: 786 FIDRYFERFPGIRTYMDDTVAFAKE--------------------------HNRVETLFG 819

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621
           R +   ++               R            +Q  + D++   M+    A     
Sbjct: 820 RKIHTPEINAK----GPGAGFAKRAAINAP------IQGTAADVIRRAMIRMDAAIAHLP 869

Query: 622 YDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE+V E          +    +M +   P     +PL  +      +
Sbjct: 870 AKMLLQVHDELVFEVDKDAAHDLIAAAREVMENAANPVVKFDVPLVVDAGIGATW 924


>gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15]
          Length = 868

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 205/703 (29%), Gaps = 165/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S          +Y  D  ++  +F             HD            + 
Sbjct: 293 AFDTETTSL---------RYM-DAEIVGVSFAVKPGEAAYVPLGHDYMGAPEQLDRDQVL 342

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LEN D+  V  N  +++ VL     + +       T++ +           + +
Sbjct: 343 DQLKPLLENPDLAKVGQNLKYDKNVLANH-GITLEGIA-EDTMLESYVLNSVATRHDMDS 400

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L  +    E+      +    ++        Y   D  +T  +
Sbjct: 401 LAMYY------------LGEKTTSFESIAGKGAKQLTFNQIDLEKAAPYAAEDADITLRL 448

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               +  L  +   +  RG  +  +     +Q +     +L++
Sbjct: 449 HQTLRPKLKETGKLAAVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAELEK 508

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA--IQVFN 278
           E   +      +    ++L+   + + GL +    +   ++  S   + +P     +V  
Sbjct: 509 EAHEVAG-ETFNLGSTKQLQAIFYDKMGLPVIKKPQRARRQQRSRCFRNSPTNTNCRVIL 567

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                S+      +TL E ++       T      + TGR S      QN+P  S     
Sbjct: 568 EHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRSEQGRR 627

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA EG KLV AD + IE R++A ++G++  
Sbjct: 628 -------------------------IRQAFIAPEGYKLVAADYSQIELRIMAHLSGDKGL 662

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           LKAFE GED++  T +  F V+   V+ DQR   K +                    G++
Sbjct: 663 LKAFEKGEDIHKATASEVFGVSLDDVSSDQRRSAKAINF--------------GLIYGMS 708

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               +  +                                     +     + +++  V 
Sbjct: 709 AFGLSRQLDVE------------------------------RKLAQEYIDRYFERYPGVL 738

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +  + + +                              +  +    GR L   ++     
Sbjct: 739 KYMDNIRKQAHD--------------------------DGFVETLFGRRLYLPEINARN- 771

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDE 631
                 +   R            +Q  + DI+   M++              + + VHDE
Sbjct: 772 --KQLQQAAERTAINAP------MQGTAADIIKRAMVDVENWLLKEHADEARMTMQVHDE 823

Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++ E  ++        L   M++       +PL  E      +
Sbjct: 824 LILEVKESALDKIRSGLEKRMSAAAE--LDVPLLVEAGVGDNW 864


>gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222]
 gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222]
          Length = 940

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 93/714 (13%), Positives = 188/714 (26%), Gaps = 174/714 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            + ID ET    ++             ++  +              H             
Sbjct: 354 VVAIDTETTGLDEM----------QAELVGVSLCTGPGRAAYLPLGHVDGAADLFGSGAR 403

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                       +LK  LE+  V  +  N  ++  VL       I +     T++L+ + 
Sbjct: 404 VEGQMDLDRALAMLKPVLEDPSVLKIGQNIKYDWKVLARH---GIRMVPLDDTMLLSYAQ 460

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + +       +    K+LI                    + A     EY
Sbjct: 461 NAGAHNHGMDELADLY--LGHRCLPIKDLI----------GSGKSQINFSQVAIDKASEY 508

Query: 161 CKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  +++ L P  +              +  +   +   G  +D      ++  
Sbjct: 509 AAEDAEVTWRLWRHLRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDSEHLKRMSNA 568

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
              +   L+ E+  L  G   +    ++L   LF   GL      +    +T   VL   
Sbjct: 569 FAQKMAGLEAEIHELAGGP-FNVGSPKQLGEILFERMGLAGGKQGKTGAFSTGAEVLEDL 627

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                +      +    S+      + L   +N +     T   +  ++TGR +      
Sbjct: 628 AAEGHELPARVLDWRAISKLKSTYTDALPLHVNPETGRVHTSYSIAGAQTGRLASTDPNL 687

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +                              +R   +A+ G +LV  D + IE 
Sbjct: 688 QNIPVRTDEGRR-------------------------IREAFVAAPGMRLVSLDYSQIEL 722

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +A      +AF  G D++  T ++ F V    +    R   K +           
Sbjct: 723 RILAHVAQIPALQQAFRDGIDIHAMTASQMFGVPVEGMDPMIRRRAKAIN---------- 772

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A          +  
Sbjct: 773 ----FGVIYGIS------------------------------GFGLARNLRIPRAEAQAF 798

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + ++   +    +      +Q                          +  +    GR
Sbjct: 799 IDTYFERFPEIRAYMDRTVAGAKQ--------------------------DGFVRTLFGR 832

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY 622
            ++   +  +        R                +Q  + DI+   M+           
Sbjct: 833 RIMTPGINQSGPAAGGARRA----------AINAPIQGAAADIIRRAMIRMPQAIAHLPA 882

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673
            ++L VHDE+V E  +        +   +M      A    +PL  +  +   +
Sbjct: 883 RMLLQVHDELVFEVEEAAVPELVEVARGVMQGAADPAVRLDVPLIVDAGQGANW 936


>gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
 gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501]
          Length = 942

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 93/699 (13%), Positives = 205/699 (29%), Gaps = 160/699 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKE 59
           +  D ET S   L          +  ++  AF ++ H                + + L+ 
Sbjct: 371 VCFDTETTSLDPL----------EAELVGIAFSWEAHKGFYLPVPEGREAAGEVLEELRP 420

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117
             E+  +  V  N  ++  VL     + +       T++            +  + E   
Sbjct: 421 FFESDTIEKVGQNLKYDIKVLSTY-GIPVR-GPLFDTMLAHYLINPDMRHNMDVLAETY- 477

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +       +LI +                          EY   D  +T ++ +   P
Sbjct: 478 -LNYTPVPISDLIGK---------KGKNQLSMRDVPLEDQTEYAVEDADITLQLAQLFGP 527

Query: 178 LSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
              + Q           L  +   +   G  +D      L+  ++ +   L  ++     
Sbjct: 528 ELREAQTEELFKEIEIPLLRVLADMELEGINLDTGFLEKLSGELEKDIEGLVGKIYEAAG 587

Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    ++L   LF +  L      T     +T + VLS   K       V + R  
Sbjct: 588 -EEFNIGSPKQLGEILFDKMKLVDKPKKTRTGQYSTAEDVLSGLAKEHEIVQMVLDYR-G 645

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++     ++ L + +        T      + TGR S      QN+P  +         
Sbjct: 646 LTKLKSTYVDALPQQVAPSTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGR----- 700

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                +R   I      +L+ AD + IE R++A ++ E   +++
Sbjct: 701 --------------------QIRKAFIPRSPEYQLLAADYSQIELRIIAALSEEDTMIES 740

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+ GED++  T A+ F V   +VT++QR+  K +   +                G++   
Sbjct: 741 FKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFGII--------------YGVSAFG 786

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            ++                                    T  + +   + + + ++    
Sbjct: 787 LSNQ------------------------------TNLSRTEAKELIDTYYKTYPKLRNYI 816

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           ++      +                          +  +    GR    +D+  + + + 
Sbjct: 817 SDQIDFARE--------------------------HGYVQTVLGRRRYLKDINGSNAVVR 850

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
               +               +Q  + DI+   M+   +          ++L VHDE+V +
Sbjct: 851 GAAERN---------AVNAPIQGSAADIIKIAMIRIYQKLREGNFKTRMLLQVHDELVFD 901

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +     +++   M S    A  +PL  +    + +
Sbjct: 902 CYRGEADTVSALIKSEMESAYELA--VPLVVDMGFGETW 938


>gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25]
 gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25]
          Length = 928

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 99/703 (14%), Positives = 196/703 (27%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F  D+         HD            + 
Sbjct: 352 AFDTETDNLDYML----------ANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL    ++++   +   T++ +              
Sbjct: 402 EQLKPILEDAAKAKVGQNLKYDASVLARY-DIELKGIK-HDTMLESYIYNSVGGKHDMDS 459

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++        Y   D  VT  +  
Sbjct: 460 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHN 509

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     ++             L  +   I   G  +D       +  +     +L+++ 
Sbjct: 510 RLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDEMKLSAQSVEITARLDELEKKA 569

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL         T +T + VL       P    +  
Sbjct: 570 YEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPKLILE 628

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  + +   
Sbjct: 629 YR-GLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEAGRR 687

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 688 -------------------------IRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQAL 722

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    +   QV+ +QR   K +                    G++
Sbjct: 723 LDAFRDGKDIHAATAAEIMGLDIEQVSSEQRRRAKAVN--------------FGLIYGMS 768

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 769 ------------------------------AFGLAKQLGIPRGEAQAYMDKYFERYPGVM 798

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +         +     I                         GR L   ++ +   
Sbjct: 799 QYMEDTRSTA--ADKGYVETIF------------------------GRRLHLPEIKSRNG 832

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 833 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 883

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S +  LM S       +PL AE      +
Sbjct: 884 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 924


>gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
 gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53]
          Length = 936

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 95/719 (13%), Positives = 199/719 (27%), Gaps = 180/719 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            + +D ET S  ++             ++  +              H             
Sbjct: 346 HVAVDTETTSLDEMR----------ADLVGISLCVAAGQACYIPLAHKAGADDLFGSDAR 395

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                       +LK  LE+  +  +  N  ++  +      L I +     T++++ + 
Sbjct: 396 AEGQMDMAACLAMLKPVLEDASILKIGQNMKYDAKIFA---LLGIAVAPIDDTMLMSYAM 452

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E           G   I      +             R       +Y
Sbjct: 453 HAGLHNHGMDTLSERY--------LGHIPIPI----KPLLGSGKSAITFDRVPVDDAVKY 500

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  +++  +P   +          E+ L  +   +   G  VD      ++  
Sbjct: 501 AAEDADVTLRLWQMFKPQLHQSRVTTVYETLERPLVPVLAQMEMHGIKVDRDTLSRMSNA 560

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTE----TTCQR 261
              +   L+ E++ +      +    ++L   LF E GL      L    +    +T   
Sbjct: 561 FAQKMAGLEDEIQKMAGRP-FNVGSPKQLGEILFDELGLAMPDGKLPAKGKTGAYSTGAD 619

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL     +     ++ + R   ++      + L + +N D     T   +  + TGR + 
Sbjct: 620 VLEDLATIHDLPRRILDWRQ-LAKLKSTYTDALQDHINPDTGRVHTSYSIAGAITGRLAS 678

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+P  S                              +R   +A+ G  +V  D 
Sbjct: 679 TDPNLQNIPVRSDEGRR-------------------------IREAFVAAPGNVIVSLDY 713

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA +AG     +AF  G D++  T +  F+V   Q+T D R   K +      
Sbjct: 714 SQIELRILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDQMTPDIRRQAKAIN----- 768

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         G++                                  A       +
Sbjct: 769 ---------FGVIYGIS------------------------------GFGLARNLRIPRS 789

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             +     + ++   + +  ++                                    + 
Sbjct: 790 DAQGFIDRYFERFPGIRQYMDDTVAFARD--------------------------RGYVQ 823

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620
              GR +   ++               R            +Q  + D++   M+   KA 
Sbjct: 824 TLFGRRINTPEINTK----GPQAGFAKRAAINAP------IQGTAADVIRRAMIRMPKAI 873

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E   T   +   +   +M +   P+    + L  +  +   +
Sbjct: 874 AGLPAKMLLQVHDELLFEVDATAADDLIGIARQVMETASDPAVKLDVKLSVDAGQGPNW 932


>gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B]
 gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B]
          Length = 928

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 99/703 (14%), Positives = 196/703 (27%), Gaps = 164/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F  D+         HD            + 
Sbjct: 352 AFDTETDNLDYML----------ANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL    ++++   +   T++ +              
Sbjct: 402 EQLKPILEDAAKAKVGQNLKYDASVLARY-DIELKGIK-HDTMLESYIYNSVGGKHDMDS 459

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E            ++        Y   D  VT  +  
Sbjct: 460 LALRFLQHS----------CISFEQIAGKGKNQLTFNQIELEQASPYAAEDADVTLRLHN 509

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     ++             L  +   I   G  +D       +  +     +L+++ 
Sbjct: 510 RLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDEMKLSAQSVEITARLDELEKKA 569

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL         T +T + VL       P    +  
Sbjct: 570 YEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPKLILE 628

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N       T      + TGR S      QN+P  + +   
Sbjct: 629 YR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEAGRR 687

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G+Q  
Sbjct: 688 -------------------------IRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQAL 722

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A    V+   V+ +QR   K +                    G++
Sbjct: 723 LDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVN--------------FGLIYGMS 768

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A +        +     + +++  V 
Sbjct: 769 ------------------------------AFGLAKQLGIPRGEAQAYMDTYFERYPGVM 798

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +         +     I                         GR L   ++ +   
Sbjct: 799 QYMEDTRSTA--ADKGYVETIF------------------------GRRLHLPEIKSRNG 832

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------KAGYDIVLTVHDE 631
                 +   R            +Q  + DI+ + M+               +++ VHDE
Sbjct: 833 MRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 883

Query: 632 IVC-ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V      +     S +  LM S       +PL AE      +
Sbjct: 884 LVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 924


>gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3]
 gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3]
          Length = 919

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/702 (15%), Positives = 199/702 (28%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +   +          H             + 
Sbjct: 345 SFDTETTSLDPMV----------AQIVGISLSTEPGSAAYIPVAHRGPDAPEQLPRDEVL 394

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
             LK  LE+ +   V  +  ++  VL      +I ++     TL+ +             
Sbjct: 395 AKLKPWLESAERRKVGQHLKYDAQVLANY---EIALNGIEHDTLLESYVLESHRTHDMDS 451

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+    K            K E       +              Y   D  +T ++  
Sbjct: 452 LALRHLGVKTI----------KYEEVAGKGAQQIGFDEVPLETAAAYAAEDADITLQLHL 501

Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            + P               E  +  + + +   G  +D A     +  + V   +L++E 
Sbjct: 502 AMYPQVAREPGLKRVYAEIEMPVSLVLRRMERTGVLIDSARLDKQSHEIAVRLIELEREA 561

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    +++    F +  L +   T +    T + VL    +  P    +  
Sbjct: 562 YELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 620

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+      + L   +N+      T      + TGR +      QN+P  +     
Sbjct: 621 HR-GLSKLKSTYTDKLPRMINARTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR 679

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G ++V AD + IE R++A ++ ++  
Sbjct: 680 -------------------------IREAFIASPGCRIVSADYSQIELRIMAHISEDESL 714

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F V P +V+ DQR I KV+                    G++
Sbjct: 715 LRAFSQGEDIHRATAAEVFGVTPLEVSNDQRRIAKVINF--------------GLIYGMS 760

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A        A +     +  ++  V+
Sbjct: 761 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 790

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                     +                              +    GR L   ++     
Sbjct: 791 NYMETTRAVAKD--------------------------KGYVETVFGRRLWLPEINGGNG 824

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                     R            +Q  + D++   M+         K    +++ VHDE+
Sbjct: 825 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDGWLERDKLRSRMIMQVHDEL 875

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E P+ +       L  +M+        +PL AE      +
Sbjct: 876 VLEVPEDELALVREKLPEMMSGVAK--LKVPLVAEVGAGDNW 915


>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
 gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8]
          Length = 893

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 115/703 (16%), Positives = 215/703 (30%), Gaps = 165/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL 57
            ID ET S              D  ++  +  F           H       +  + + L
Sbjct: 321 AIDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           KE LE+    IV  N  F+  VL     ++ P+  +  T++ A           L  +  
Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVLM-VKGVE-PVPPYFDTMIAAYLLEPNEKKFNLDDLA- 427

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            LK    KM   +EL++                            Y   D  +T  ++K 
Sbjct: 428 -LKFLGYKMTSYQELMSF--------SFPLFGFSFADVPVEKAANYSCEDADITYRLYKT 478

Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L                E  L  +   +   G  VD      L++    +  +L +E+  
Sbjct: 479 LSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL-EDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +      +    +++   LF + G+      T+    +T   VL            +   
Sbjct: 539 IAG-EPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R +  +     ++ L + +N   GR+  +    G + TGR S      QNLP  S   +E
Sbjct: 598 R-KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLPTKSEEGKE 655

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397
                                    +R  ++       +V AD + IE R+LA ++G++ 
Sbjct: 656 -------------------------IRKAIVPQDPNWWIVSADYSQIELRILAHLSGDEN 690

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L+AFE G D++  T +R FNV P +VT++ R               A      +   G+
Sbjct: 691 LLRAFEEGIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGV 736

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                +                              +         E++   +   + +V
Sbjct: 737 TPYGLS------------------------------VRLGVPVKEAEKMIVNYFVLYPKV 766

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +    +    ++                             +    GR      +    
Sbjct: 767 RDYIQRVVSEAKE--------------------------KGYVRTLFGRKRDIPQLMARD 800

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
                T  +  R            +Q  + DI+   M+         K    +++ VHDE
Sbjct: 801 ---RNTQAEGERIAINTP------IQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDE 851

Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E P+ ++     ++   MT+       +PL+ +    K +
Sbjct: 852 LVFEVPNEEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892


>gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002]
 gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002]
          Length = 913

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/701 (15%), Positives = 199/701 (28%), Gaps = 162/701 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +   +          H             + 
Sbjct: 339 SFDSETTSLDPMV----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ D   V  +  ++  VL     +++       TL+ +              
Sbjct: 389 AKLKPWLESADHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLESYVLESHRTHDMDSL 446

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A     EY   D  +T  + + 
Sbjct: 447 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQA 496

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E     + + +   G  +D       +  +     +L+    
Sbjct: 497 LYPQIAVENSLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSGEIATRLIELEGSAY 556

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 557 ELAGG-EFNLGSPKQIGQIFFEKLELPVIKKTPSGAPSTDEEVLQKLAEDYPLPKILLEH 615

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N       T      + TGR +      QN+P  +      
Sbjct: 616 R-GLSKLKSTYTDKLPRMVNPRTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRR- 673

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G KLV AD + IE R++A ++G++  +
Sbjct: 674 ------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLM 709

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T +  FNV P +V+ DQR + KV+                    G++ 
Sbjct: 710 RAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVINF--------------GLIYGMS- 754

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A        A +     +  ++  V+ 
Sbjct: 755 -----------------------------AFGLASNLGITRDAAKMYIDRYFARYPGVAR 785

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             +E   + +                              +    GR L   ++      
Sbjct: 786 YMDETRLSAK--------------------------AKGYVETVFGRRLWLPEINGGNGP 819

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                    R            +Q  + D++   M+         K G  +++ VHDE++
Sbjct: 820 RRQA---AERAAINAP------MQGTAADLIKMSMIAVQNWIEDSKIGTRMIMQVHDELI 870

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E PD +       L  LM      A  +PL AE      +
Sbjct: 871 LEVPDAELSEVRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909


>gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 939

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 105/712 (14%), Positives = 205/712 (28%), Gaps = 171/712 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
            + ID ET S            A +  ++  +  F           H             
Sbjct: 354 KIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQY 403

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110
           +   LK  LEN  +  +  N  +++ V      + +        ++ +          L 
Sbjct: 404 VLDRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGI-VGDAMLASYIIESHLGHGLD 461

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +             G+ L       E+      +       A     EY   D      
Sbjct: 462 ELS------------GRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALR 509

Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +   L               E  +  +   +   G  +D A     +  +  E  KL+QE
Sbjct: 510 LEAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQE 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQ 275
             +       +    ++L+  LF + G+  + L +      +T + VL       P    
Sbjct: 570 AYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKI 628

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  NR   ++      + L E ++   +   T      + TGR +G     QN+P  +  
Sbjct: 629 ILKNR-SLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRLAGNNPNLQNIPIRTEE 687

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             +                         VR    A  G  +V AD + IE R++A ++G+
Sbjct: 688 GRK-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSGD 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+ GED++  T A  F +AP  V+ +QR   K +                    
Sbjct: 723 KTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTIN--------------FGLIY 768

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +  ++                                 +     +  ++ 
Sbjct: 769 GMGQYGLAKSLGIDNLS------------------------------AKNFIDRYFARYP 798

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V+E      +                                 +    GR L   D+ +
Sbjct: 799 GVAEYMQRARECA--------------------------AGQGYVETLFGRRLYLPDIRH 832

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------------AGY 622
             +       +  R            +Q  + D++   M++ ++                
Sbjct: 833 TNA---NIRARAERAAINAP------MQGTASDLIKRAMIDVSRWLSECEASPWDDLLQS 883

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +++ VHDE+V E P+ +       L  +M +       +PL AE      +
Sbjct: 884 KLIMQVHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAEVGAGMNW 935


>gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814]
 gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814]
          Length = 956

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 100/715 (13%), Positives = 194/715 (27%), Gaps = 170/715 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQ 55
            + +D ET     +             ++  +     +        H           P+
Sbjct: 364 VIGVDTETDGLDAI----------GANLVGVSLALGPNDACYIPLGHTGDGDLLGDGAPE 413

Query: 56  V---------LKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARS 102
                     LK  LE+  +  V  N  ++  V         +  I  +    T++L+ +
Sbjct: 414 QMDMKLALGILKPMLEDPTILKVGQNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAA 473

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                               + E      +    +       +     +       +Y  
Sbjct: 474 LE--------AGQHNHGMDVLSELH-FDHKPIPFKEVAGTGKKQITFDKVPVPEATKYAA 524

Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            D  VT  ++  L+P            + E+ +  +   +   G  V+      L+    
Sbjct: 525 EDADVTLRLWALLKPRLSAEGMATLYETIERPMVPVVAQMERAGIFVERETLSRLSGDFA 584

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKK 268
               + + E   L      +    ++L   LF E  L     T+T    T    L     
Sbjct: 585 QRMAQYEAEAYELAG-REFNMGSPKQLGEILFGEMELPGGKKTKTGAWATGADALEDLAA 643

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              +  ++       S+      + L E +N   GR+  +   +GA +TGR S      Q
Sbjct: 644 EGHELPKILLGWRSLSKLKSTYTDALGECINAETGRVHTSFNLVGA-QTGRLSSSDPNLQ 702

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  +A EG  L+ AD + IE R
Sbjct: 703 NIPIRTEEGRK-------------------------IRAAFVAQEGNVLIAADYSQIELR 737

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +        AF    D++  T +  F V    +    R   K +            
Sbjct: 738 LLAHIGNIDTLKDAFNNDLDIHAMTASEMFGVPIEGMDPMIRRKAKAIN----------- 786

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++                                  A +            
Sbjct: 787 ---FGIIYGIS------------------------------AFGLARQLGIPRGEASEYI 813

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           KA+  K   + +  +E+     +                             +    GR 
Sbjct: 814 KAYNAKFPGILKYMDEMKAFARE--------------------------KGYVETAFGRR 847

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG-- 621
           +  + +               R+            Q  + DI+   M+       K+G  
Sbjct: 848 IWMKGINGK----GPERGFAERQAINAPL------QGSAADIIKRAMVKMPAALEKSGLQ 897

Query: 622 YDIVLTVHDEIVCETPD-TDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P    E    ++  +M +   P     +PL  E   +  +
Sbjct: 898 AKMLLQVHDELIFEAPKAEAEKTIKLVKKIMETATFPVMDLSVPLLVEAEAAHSW 952


>gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
 gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
          Length = 917

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/702 (15%), Positives = 202/702 (28%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F  +          H             + 
Sbjct: 343 AFDTETTALDPMV----------ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVL 392

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ D   V  +  ++  VL     +++       TL+ +              
Sbjct: 393 ARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A     EY   D  +T ++ + 
Sbjct: 451 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHRA 500

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D A     +  +      L+ +  
Sbjct: 501 LYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIATRLVDLEAQAY 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 561 ALAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N   GR+        A  TGR +      QN+P  +     
Sbjct: 620 R-GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 677

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA+ G ++V AD + IE R++A ++G+   
Sbjct: 678 -------------------------IREAFIAAPGHRIVSADYSQIELRIMAHISGDASL 712

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F V P +V  DQR I KV+                    G++
Sbjct: 713 LRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVIN--------------FGLIYGMS 758

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A        A +     +  ++  V+
Sbjct: 759 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 788

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +     ++                             +    GR L   ++     
Sbjct: 789 QYMEDTRATAKE--------------------------RGYVETVFGRRLWLPEINGGNG 822

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                     R            +Q  + D++   M+         K    +++ VHDE+
Sbjct: 823 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDEL 873

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E PD +       L  +M         +PL AE      +
Sbjct: 874 VLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
 gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597]
          Length = 935

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 97/715 (13%), Positives = 200/715 (27%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            + +D ET    ++             ++      +          H             
Sbjct: 349 YVAVDTETTGLDEMR----------ADLVGICLATEPGLACYVPLGHKAAEGEGLFATED 398

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                       ++LK  LE+  +  +  N  ++  +LK C    I +     T++++ +
Sbjct: 399 LAEGQMAEAEALEMLKPVLEDEAILKIGQNMKYDAKILKRC---GIDVAPCDDTMLISYA 455

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    + A+ +              L       +             +        
Sbjct: 456 LNAGLHQHGMDALADRY------------LSHTCIPIKELLGTGKAMITFDKVPIDKATR 503

Query: 160 YCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  VT  +++ L+P    +          + L  +   +   G  VD      ++ 
Sbjct: 504 YAAEDADVTLRLWQVLKPQLHAKKVTTVYETLERPLAPVLAKMEMHGIKVDRDTLSRMSS 563

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L      +    ++L   LF + G+      +T    T   VL  
Sbjct: 564 AFAQKMGALEAEIHELAG-ERFNVGSPKQLGEILFDKMGMEGGKKGKTGAYATGADVLED 622

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
              L     +V + R   S+      ++L   ++ +     T      + TGR +     
Sbjct: 623 LATLHELPARVLDWRQ-LSKLKSTYTDSLQTHIHPETGRVHTSYQQTGANTGRLASTDPN 681

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   IA EGK L+  D + IE
Sbjct: 682 LQNIPVRSEEGRR-------------------------IREAFIAEEGKVLLSLDYSQIE 716

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AF+ G+D++  T +  F V   ++T + R   K +          
Sbjct: 717 LRILAHIADIPALKQAFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAIN--------- 767

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 768 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 792

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   + +   E  +  ++                          N  +    G
Sbjct: 793 FIDRYFERFPGIKDYMAETTEFGKK--------------------------NGYVQTLFG 826

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621
           R +   ++               R            +Q  + DI+   M+    A     
Sbjct: 827 RRIHTPEIDAK----GPRAGFARRAAINAP------IQGTAADIIRRAMIRMPDAILGLP 876

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAK--GLPLKAEGYESKRY 673
             ++L VHDE+V E  +      + +   +M +    A    +PL  +  + + +
Sbjct: 877 AKMLLQVHDELVFEVDEAAADEVAEVARGVMETAADPAVRIDVPLVVDAGQGRNW 931


>gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237]
 gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237]
          Length = 945

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 100/700 (14%), Positives = 215/700 (30%), Gaps = 162/700 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKE 59
           +  D ET     LT            ++  AF ++           D      + + L+ 
Sbjct: 374 VCFDTETTGLNPLT----------AELVGIAFSWEASKGFYIPFPADKTEAQEIIEQLRP 423

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-AL 116
             E+  +  +  N  ++  VL    N+ +   +   T++            ++ + E  L
Sbjct: 424 FFEDEAIEKIGQNLKYDIKVLDKY-NVKVK-GKCFDTMLAHYLINPDMRHNMEVLAETYL 481

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             +   + E   LI +                          EY   D  +T ++ ++ +
Sbjct: 482 NYTPVSITE---LIGK---------KGKNQLNMRDVPLPNQTEYAAEDADITYQLAQQFK 529

Query: 177 PLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P   + +           L ++   +   G  +D    ++L + +D +  KL+ ++    
Sbjct: 530 PELEEAKTQELFTDIEIPLLHVLADMELEGINLDTKFLNSLAEDLDNDIKKLEADIYEEA 589

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L   LF +  L      T+    +T + VLS   K       V + R 
Sbjct: 590 G-EEFNIASPKQLGDILFDKLALVKKPKKTKTGQYSTAEDVLSYLAKDHKIIENVLSYR- 647

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++     ++ L   +        T      + TGR S      QN+P  +        
Sbjct: 648 GLAKLKSTYVDALPAQVEESTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGR---- 703

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   +   +   LV AD + IE R++A ++ E   ++
Sbjct: 704 ---------------------QVRKAFVPRNKEYVLVAADYSQIELRIIAALSEETTMIE 742

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ GED++ +T ++ FNV   +VT++QR+  K +   +                G++  
Sbjct: 743 AFKNGEDIHASTASKVFNVPLEEVTREQRSNAKTVNFGII--------------YGVSAF 788

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             ++                                       + +   + + + ++   
Sbjct: 789 GLSNQTD------------------------------LSRAEAKELIDTYYKTYPKLKSY 818

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              L                                N  +    GR    +D+  + + +
Sbjct: 819 MGGLVDFARD--------------------------NGYVQTVLGRRRYLKDINGSNAIV 852

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                +               +Q  + DI+   M+N  K          ++L VHDE+V 
Sbjct: 853 RGAAERN---------AVNAPIQGSAADIIKIAMINIHKKLEEGKYKTKMLLQVHDELVF 903

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +    +      ++   M +   +   +PL  E    + +
Sbjct: 904 DVYKPELEEMKTLIKSEMENA--YKLEVPLDVEVGVGENW 941


>gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille]
 gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille]
          Length = 912

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/697 (15%), Positives = 198/697 (28%), Gaps = 150/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
            ID ET S I +             ++  +   +          H            ++ 
Sbjct: 338 SIDTETTSLIPM----------QAQLVGISLCCEPGVAAYIPVAHHYQDVPQQLSRELVL 387

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + +K  LE+     V  N  ++  +      +++       TL+ +       +      
Sbjct: 388 EKMKPWLEDASKAKVGQNLKYDSHIFANH-GVNLRGI-VHDTLLESYVFESHRSHDMDSL 445

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+  ++K              +             +       EY   D  +T ++ +R
Sbjct: 446 ALRHLNRKTIT----------FQEVCGKGASQIGFEQVEIGRATEYAAEDADITLQLHQR 495

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P               E     + Q I   G  +D  L    +  +     +++Q   
Sbjct: 496 MWPNVAEDNGLTFVYEKIELPTAVVLQKIERNGVLIDPDLLAKQSNELGKRMLEIEQNAY 555

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L      +    +++    F +  L +   T +    T + VL    +  P    +   
Sbjct: 556 ELAEQP-FNLNSPKQIGEIFFEKLKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPKVLLEY 614

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++       T      + TGR +      QN+P  +      
Sbjct: 615 R-GLSKLKSTYTDKLPKMIDPTTGRVHTNYAQAVAVTGRLASNDPNLQNIPIRNAEGRR- 672

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA+ G  +V AD + IE R++A ++G++  L
Sbjct: 673 ------------------------IREAFIAAPGNVIVSADYSQIELRIMAHISGDENML 708

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V    V  +QR   KV+   L Y   A           L +
Sbjct: 709 QAFADGEDIHRATAAEIFGVERRAVDSEQRRYAKVINFGLIYGMSA-----FGLAGNLGI 763

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A           +   + +    +             G                   
Sbjct: 764 ERSAAQSYIERYFHRFAGVKRYMDETRLEAKARGYVQTVFGR-----------------R 806

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           LW                                      +  P+G        G  R+ 
Sbjct: 807 LW-----------------------------------LPEINSPNGPRRQ----GAERAA 827

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
           +N   +          KL    VQ           +   K    +++ VHDE+V E P+T
Sbjct: 828 INAPMQG---TAADLIKLAMIAVQG---------WLETEKLQSKMIMQVHDELVLEVPET 875

Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +       L  LM         +PL AE      + K
Sbjct: 876 ELPLVREKLPELMRHVAQ--LKVPLIAEVGVGNNWDK 910


>gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M]
 gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2]
 gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M]
          Length = 920

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/702 (15%), Positives = 203/702 (28%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F  +          H             + 
Sbjct: 346 AFDTETTALDPMV----------ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVL 395

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ D   V  +  ++  VL     +++       TL+ +              
Sbjct: 396 ARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 453

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A     EY   D  +T ++   
Sbjct: 454 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHCA 503

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D A     +  + +    L+ +  
Sbjct: 504 LYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIAMRLVDLEAQAY 563

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 564 ALAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 622

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N   GR+        A  TGR +      QN+P  +     
Sbjct: 623 R-GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 680

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA+ G ++V AD + IE R++A ++G+   
Sbjct: 681 -------------------------IREAFIAAPGHRIVSADYSQIELRIMAHISGDASL 715

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F V P +V  DQR I KV+                    G++
Sbjct: 716 LRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVIN--------------FGLIYGMS 761

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A        A +     +  ++  V+
Sbjct: 762 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 791

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   + ++                             +    GR L   ++     
Sbjct: 792 QYMEDTRASAKE--------------------------RGYVETVFGRRLWLPEINGGNG 825

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                     R            +Q  + D++   M+         K    +++ VHDE+
Sbjct: 826 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDEL 876

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E PD +       L  +M         +PL AE      +
Sbjct: 877 VLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 916


>gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5]
 gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5]
          Length = 915

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 105/704 (14%), Positives = 189/704 (26%), Gaps = 170/704 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMP-----QVL 57
            ID ET                   ++  +              H   P +P     + L
Sbjct: 343 AIDTETTGLNP----------RHAKLVGISVATAPGRAAYVPLGHEDGPQLPRPLALERL 392

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              L +  +  + HN+ F+  VL+     D        T++++ + G             
Sbjct: 393 APVLADPSILKIFHNAKFDLHVLERAGLAD--ATPVDDTMLMSYTLG--------AGRHG 442

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT--------- 168
               ++     L  R    +                      Y   D  VT         
Sbjct: 443 HGMDELSALH-LDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRP 501

Query: 169 -------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
                    +++ +E           +   +   G  VD A   +++         + +E
Sbjct: 502 RLRTEAALALYETMERRL------LSVLLGMERAGIMVDRADLESMSAEFARRMDDIQRE 555

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
           +E L      +    ++L   LF E GL     T+T    T   VL              
Sbjct: 556 IEKLAGRA-FNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRV 614

Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
               +  +      + LV  ++ +D R+  +      + TGR S      QN+P  +   
Sbjct: 615 LEWRQLQKLKSTYADALVGEIDIADQRVHTSFSQAITT-TGRLSSNEPNLQNIPIRTSEG 673

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA+ GK L+ AD + IE R+LA +A   
Sbjct: 674 -------------------------ARIRRAFIAAPGKALISADYSQIELRLLAHVADIP 708

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              ++F  GED++  T A  F +    +    R   K +                    G
Sbjct: 709 ALKESFAKGEDIHARTAAEVFGLPMEGMDPMVRRRAKAINF--------------GIIYG 754

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +     +  +R   A+  ++  
Sbjct: 755 IS------------------------------AFGLARQLGIENSEAKRFIDAYFARYPE 784

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +    NE  +                              +  ++ P GR      +   
Sbjct: 785 IRRYMNETAEFART--------------------------HGYVLTPFGRRCYVPGITEK 818

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                       R+            Q  + DI+   M+    A         ++L VHD
Sbjct: 819 NPARRGY---AERQAINAPL------QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHD 869

Query: 631 EIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E P       + L   +M    S    +PL  E      +
Sbjct: 870 ELVFEAPKDQAEATAKLACAVMQGAAS--LSVPLLVETGIGANW 911


>gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945]
          Length = 930

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 199/705 (28%), Gaps = 163/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  L N  +  +  N  +++ V      + +        ++ +          L
Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  NR   ++      + L + ++       T      + TGR +      QN+P  + 
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPDMISPQDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 685

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR    A  G  +V AD + IE R++A ++G
Sbjct: 686 EGRR-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSG 720

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF+ GED++  T A  F  AP  V+ +QR   K +                   
Sbjct: 721 DKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTIN--------------FGLI 766

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+     A  +  ++                                 +     +  ++
Sbjct: 767 YGMGQYGLAKSLGIDNLS------------------------------AKNFIDRYFARY 796

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V+E      +                                 +    GR L   D+ 
Sbjct: 797 PGVAEYMQRAKEQA--------------------------AAQGYVETLFGRRLYLPDIR 830

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
           N  +          R            +Q  + D++   M++            +V+ VH
Sbjct: 831 NKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVRNWLSDGIDSKLVMQVH 881

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E  +T+       L  +M         +PL AE    + +
Sbjct: 882 DELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 911

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/696 (16%), Positives = 201/696 (28%), Gaps = 152/696 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
            ID ET S   +             ++  +   +          H             + 
Sbjct: 337 AIDTETTSLEPM----------QAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVL 386

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L+  LE+     V  N  ++  +      + +       TL+ +       +      
Sbjct: 387 EKLRSWLEDDSKPKVGQNLKYDSHIFANH-GVTLRGI-VHDTLLQSYVFESHRSHDMDSL 444

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+           L  +    +             +       EY   D  +T ++ +R
Sbjct: 445 ALRH----------LNRKTMTFQDVCGKGASQLCFDQVDIARATEYAAEDADITLQLHQR 494

Query: 175 LEPL-----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P               E     + Q +   G  +D  L  T +  +     +++Q+  
Sbjct: 495 MFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLEIEQQAY 554

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L      +    +++    F +  L +   T +    T + VL    +  P    +   
Sbjct: 555 ELAGQP-FNLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPKLLLEY 613

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L + ++   GR+        A  TGR S      QN+P  +     
Sbjct: 614 R-GLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVA-VTGRLSSNDPNLQNIPIRNAEGRR 671

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA  G  +V AD + IE R++A ++ ++  
Sbjct: 672 -------------------------IREAFIAPPGSVIVSADYSQIELRIMAHISEDENM 706

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F VA   V+ +QR   KV+   L Y   A           L 
Sbjct: 707 LRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSA-----FGLAGNLG 761

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +   A           +   + +    +             G                  
Sbjct: 762 IERAAAQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGR----------------- 804

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            LW                                      +  P+G        G  R+
Sbjct: 805 RLW-----------------------------------LPEINSPNGPRRQ----GAERA 825

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
            +N   +          KL    VQ    D      + A K    +++ VHDE+V E P+
Sbjct: 826 AINAPMQG---TAADLIKLAMIAVQ----DW-----LEAEKLQTKMIMQVHDELVLEVPE 873

Query: 639 TDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           T+       L  LM +       +PL AE    K +
Sbjct: 874 TELALVRVKLPELMRNVAQ--LKVPLIAEVGVGKNW 907


>gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
 gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271]
          Length = 932

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 96/700 (13%), Positives = 201/700 (28%), Gaps = 161/700 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLK 58
            +  D ET S   L          +  ++  +F +  H         D      + +  +
Sbjct: 361 EVCFDTETTSVNAL----------EAELVGISFCWSAHKGYYVPFPTDKAATTKLLETFR 410

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN  +  V  N  ++  VL+   N+++       T++            +  + E  
Sbjct: 411 PFFENEHIGKVGQNLKYDLKVLQNY-NIEVR-GALFDTMIAHYLLNPDMRHNMDILSETY 468

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              +      + LI                +           EY   D  VT ++    +
Sbjct: 469 --LNYTPIAIESLI----------GKGKAQRSMRTVPLDQVKEYAVEDADVTWQLKNVFK 516

Query: 177 PLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
               K             L  +   +   G  +DV       + +D +  +L+  +    
Sbjct: 517 EEMPKVNAEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIAEQA 576

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L   LF +  +      T+T    T + VL+           +     
Sbjct: 577 G-ENFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADIL-EWR 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           +  +     ++ L   +N       T      + TGR S      QN+P  +        
Sbjct: 635 QVQKLKSTYVDALPLEVNKLTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTPRG----- 689

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   IA      L+ AD + IE R++A ++ E   + 
Sbjct: 690 --------------------QQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMID 729

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           +F   ED++ +T A+ F+V   +VT++QR+  K +   +                G++  
Sbjct: 730 SFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGII--------------YGVSAF 775

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +                                     +  + +   +   +  +   
Sbjct: 776 GLSAQ------------------------------TNLSRSESKELIDTYYATYPNLRNY 805

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            ++  Q  ++                          +  +    GR     D+ +    +
Sbjct: 806 ISKQIQFAQE--------------------------HGYVETVLGRRRYLPDIHSRNQVV 839

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                +               +Q  + DI+   M+              ++L VHDE+V 
Sbjct: 840 RGAAERN---------AVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVF 890

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + P T+      ++   M S  + A  +PL A+      +
Sbjct: 891 DVPKTELNTVKPLIKEAMESAFTLA--VPLVADLGVGDNW 928


>gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205]
 gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205]
          Length = 921

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 105/705 (14%), Positives = 189/705 (26%), Gaps = 167/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
               ID ET +                 ++ F+  FD +        HD           
Sbjct: 347 DHFAIDTETTNLD----------YRVAELVGFSIAFDANEAYYVPLAHDYEGAPEQLSRE 396

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   +K  LEN  V  + H+  ++  +      + I    +  T++ +           
Sbjct: 397 QVLAQIKPILENEQVKKIGHHLKYDAHIFANH-GIIIQ-GWYFDTMLASYVLNAAATRHG 454

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++    +   Y   D  VT
Sbjct: 455 MDDVARVY------------LSHLTTTFEQIAGKGAKQKTFNQIELEVAAHYAAEDAHVT 502

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ L        EL  +   I              G  +D      L+         
Sbjct: 503 YRLYEVLSSKLKSHPELVNILHNIEMPVARVLTGMEEDGIKLDHKFLDQLSVEFSDTMQT 562

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   L      +    +++   LF + G+     T     +T + +L       P A
Sbjct: 563 LENQATELAG-ETFNIASPKQVGEVLFDKLGIKGGKKTATGQYSTSESILEKI--EHPLA 619

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +  +R   ++      + LVE  +       T      + TGR S      QN+P  +
Sbjct: 620 EVILEHR-GLAKLKNTYTDRLVEQSHDATHRVHTSYHQALTATGRLSSTDPNLQNIPIRT 678

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   IA EG+ L+ AD + IE R++A  +
Sbjct: 679 PIGR-------------------------QIRKAFIAPEGRVLLAADYSQIELRLMAHFS 713

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF+ G+D++  T A    +A   VT DQR   K +                  
Sbjct: 714 QDDALVHAFQQGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 759

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                       F           + Q+
Sbjct: 760 LYGMSEFGLTRQ------------------------------LGFTREESRSYIARYFQR 789

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V +      Q   +                             +    GR L   D+
Sbjct: 790 YPGVLDYMERTRQIARE--------------------------QGFVETILGRRLYTPDI 823

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVH 629
                 +        R             Q  + DI+   M+       K    ++L VH
Sbjct: 824 LATNKMIKQA---AERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQVH 874

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +  +M S       +P   E  +   +
Sbjct: 875 DELVFEADVAIADELSKQIADVMQSVLE--ISVPFVVEVGQGLNW 917


>gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54]
          Length = 948

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/703 (15%), Positives = 201/703 (28%), Gaps = 166/703 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           + +D ET S  ++             ++  +              H             +
Sbjct: 375 VAVDTETTSLDEM----------QAKLVGLSMAVAPGVACYIPVAHRGPDGATQLPKDEV 424

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111
              L+  LE+     + H++ ++  V      + +       T++ A          L  
Sbjct: 425 LARLRPWLEDASRAKLLHHAKYDTHVFAN-EGIRLAGIA-EDTMLQAYVLESHRGVGLND 482

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L       E       +       A    G Y   D   T ++
Sbjct: 483 LAQRY------------LGRSGVSYEDLCGKGAKQIGFDEVAVDKAGHYAAEDADFTLQL 530

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L P  + +           ++  +  TI   G  VD A     +  +  E  +L+Q+
Sbjct: 531 HQVLRPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQSHKLGQEMLQLEQK 590

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
              L      +    ++L   LF    L +   T     +T + VLS   +  P    + 
Sbjct: 591 AYELAGQP-FNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLL 649

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R   S+      + L   +N D     T     A  TGR +      QN+P  + +  
Sbjct: 650 EYR-GLSKLKSTYTDKLPRMINPDTGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGR 708

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   IA +G  L+ AD + IE R++A ++ +  
Sbjct: 709 R-------------------------VREAFIAEQG-LLLSADYSQIELRIMAHVSDDAN 742

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AF  GED++  T +  F VA A V+ +QR   K +                    G+
Sbjct: 743 LQRAFAAGEDIHRATASEVFGVALADVSSEQRRAAKAIN--------------FGLIYGM 788

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +                                 A        A +     +  ++  V
Sbjct: 789 GVFGL------------------------------ASNLGITRDAAQAYIDRYFARYPGV 818

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +       +   +                             +    GR L   ++   R
Sbjct: 819 AMYMENTRRVARE--------------------------QGYVETVFGRRLQLPEI---R 849

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
                  +   R            +Q  + D++   M+         K    +++ VHDE
Sbjct: 850 GASGPRRQGAERAAINAP------MQGTAADLIKMAMVAVQDWLEAEKLQTRMIMQVHDE 903

Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E PD +       L  LM +       +PL AE    K +
Sbjct: 904 LVLEAPDAELELVKQTLPRLMCNVAE--LRVPLVAEVGVGKNW 944


>gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
          Length = 917

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/696 (16%), Positives = 201/696 (28%), Gaps = 152/696 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
            ID ET S   +             ++  +   +          H             + 
Sbjct: 343 AIDTETTSLEPM----------QAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVL 392

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L+  LE+     V  N  ++  +      + +       TL+ +       +      
Sbjct: 393 EKLRSWLEDDSKPKVGQNLKYDSHIFANH-GVTLRGI-VHDTLLQSYVFESHRSHDMDSL 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+           L  +    +             +       EY   D  +T ++ +R
Sbjct: 451 ALRH----------LNRKTMTFQDVCGKGASQLCFDQVDIARATEYAAEDADITLQLHQR 500

Query: 175 LEPL-----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P               E     + Q +   G  +D  L  T +  +     +++Q+  
Sbjct: 501 MFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLEIEQQAY 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L      +    +++    F +  L +   T +    T + VL    +  P    +   
Sbjct: 561 ELAGQP-FNLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPKLLLEY 619

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L + ++   GR+        A  TGR S      QN+P  +     
Sbjct: 620 R-GLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVA-VTGRLSSNDPNLQNIPIRNAEGRR 677

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA  G  +V AD + IE R++A ++ ++  
Sbjct: 678 -------------------------IREAFIAPPGSVIVSADYSQIELRIMAHISEDENM 712

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F VA   V+ +QR   KV+   L Y   A           L 
Sbjct: 713 LRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSA-----FGLAGNLG 767

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +   A           +   + +    +             G                  
Sbjct: 768 IERAAAQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGR----------------- 810

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            LW                                      +  P+G        G  R+
Sbjct: 811 RLW-----------------------------------LPEINSPNGPRRQ----GAERA 831

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
            +N   +          KL    VQ    D      + A K    +++ VHDE+V E P+
Sbjct: 832 AINAPMQG---TAADLIKLAMIAVQ----DW-----LEAEKLQTKMIMQVHDELVLEVPE 879

Query: 639 TDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           T+       L  LM +       +PL AE    K +
Sbjct: 880 TELALVRVKLPELMRNVAQ--LKVPLIAEVGVGKNW 913


>gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
 gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101]
          Length = 931

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 95/715 (13%), Positives = 191/715 (26%), Gaps = 176/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    ++             ++  +             +H             
Sbjct: 345 YVAVDTETTGLDEMV----------AELVGISLCVQPGKACYIPLIHKTHTGDDLFGSED 394

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                       ++L   LE+  +  +  N  ++  +      L I +     T++L+  
Sbjct: 395 LAEGQIPTEEALRMLTPMLEDPSIMKIGQNMKYDSKIFAQ---LGITVAPIDDTMLLSYV 451

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    + A+ E           G   I      +             +        
Sbjct: 452 MHAGLHGHGMDALSERY--------LGHTPIPI----KPLLGSGKSAVTFDKVPLAQAVP 499

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  +++  +P   +          E+ L  +   +   G  VD      ++ 
Sbjct: 500 YAAEDADITLRLWQLFKPQLHRIQVTKVYETLERPLVPVLAAMERSGIKVDRDTLSRMSN 559

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L      +    ++L   LF E GL      +T    T   VL  
Sbjct: 560 AFAQKMAGLEDEIYELAGRK-FNVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLED 618

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    ++ + R   S+      + L + +N D     T   +  + TGR +     
Sbjct: 619 LATEHDLPGRILDWRQ-LSKLKSTYTDALQDHINKDTGRVHTSYSIAGASTGRLASTDPN 677

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A EGK LV  D + IE
Sbjct: 678 LQNIPIRSEEGRR-------------------------IREAFVAEEGKVLVALDYSQIE 712

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AF+ G D++  T +  F V   ++T D R   K +          
Sbjct: 713 LRILAHIADIPELKQAFKDGIDIHALTASEMFGVPLDEMTPDIRRQAKAIN--------- 763

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A          + 
Sbjct: 764 -----FGVIYGIS------------------------------GFGLARNLRIPRAEAQG 788

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   +    +      ++                          +  +    G
Sbjct: 789 FIDRYFERFPGIRTYMDNTKAFAKE--------------------------HGFVQTLFG 822

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621
           R +   ++G              R            +Q  + D++   M+          
Sbjct: 823 RKINTPEIGAK----GPRAGFAQRAAINAP------IQGTAADVIRRAMIRMPAAIKDIP 872

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E     E         +M +   P     + L  +  +   +
Sbjct: 873 ATMLLQVHDELLFEVEKGAEDALIKAARDVMENASEPVVKLDVKLIVDAGKGANW 927


>gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
 gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1]
          Length = 979

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 102/709 (14%), Positives = 204/709 (28%), Gaps = 164/709 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           L +D ET S   +             ++  +              H              
Sbjct: 392 LAVDTETDSLFPM----------QARLVGVSLSLLPGEACYIPLQHGAGGGLDFADAGGQ 441

Query: 51  -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                      LK  LE+  +  +  N  F+ TVL+      I +     T++++ +   
Sbjct: 442 PQIPLKEAIARLKPLLEDPSILKIGQNLKFDMTVLRQH---GIQLKGLDDTMLMSYALDA 498

Query: 106 P---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                 +  + E        +  G + I+                   +        Y  
Sbjct: 499 GVHGHGMDELSE--------LHLGHKPISF----AEVAGKGKAQITFDQVPVDRATAYAA 546

Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            D  VT  ++  L+P            + E+ L  +   +   G  VD A+   L+    
Sbjct: 547 EDADVTLRLWHILKPRLVAERRVTVYETLERPLVSVLAEMERAGVKVDKAVLARLSGDFS 606

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268
            +  + + E+  L      +    ++L   LF +  L     T+    +T    L +   
Sbjct: 607 QKMAQYEDEIYELAG-ERFNIGSPKQLGEILFDKQSLEGGRKTKTGAWSTDADTLEALAA 665

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
              +  Q   +    S+      + L E +N +     T   L ++ TGR +      QN
Sbjct: 666 KGHELPQRVLDWRGLSKLKSTYTDALPEYINPETGRIHTCYSLASTSTGRLASTEPNLQN 725

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +    +                         +R+  +A +G  L+ AD + IE R+
Sbjct: 726 IPVRTEDGRK-------------------------IRTAFVAEKGNLLISADYSQIELRL 760

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A  +   KAF  G D++  T +  F V    +    R   K +   + Y   A   
Sbjct: 761 LAHIADIEALKKAFAEGLDIHAMTASEMFGVPIEGMESSVRRRAKAINFGIIYGISA--- 817

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   L +         +   + +     +    ++   ++   +   G        
Sbjct: 818 --FGLANQLGIPRQEAGEYIDRYFKRFPGIRAYMDDTRDFAHKNGYVETIFGRRIH--LP 873

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           A   K+           +A       G A    +R               ++ +P     
Sbjct: 874 AINSKNPAEKSFM---ERAAINAPIQGSAADIIRR--------------AMIRMP----- 911

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS-RDILAEGMMNATKAGYDIVLT 627
                                             QA++   + A  ++            
Sbjct: 912 ----------------------------------QALADAKLAARMLLQVH--------- 928

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTS--NPSWAKGLPLKAEGYESKRY 673
             DE++ E P+ +    S +   +M+    P+ A  +PL  +   +K +
Sbjct: 929 --DELIFEVPEKEAEKTSKVVSRIMSDAAAPAVALTVPLDVDARAAKNW 975


>gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1]
 gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1]
          Length = 1027

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/704 (15%), Positives = 205/704 (29%), Gaps = 160/704 (22%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--------VMP 54
             L ID ET S           +A    ++  +  +                      ++ 
Sbjct: 448  VLAIDTETTST----------HARGCDLVGISIAWQPGEAAYIPVRAPDGDPAINELIVI 497

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
            ++L++ LE++ +  V HN  F+  VL     + +       T+V             L  
Sbjct: 498  EILRDVLESSAIEKVGHNLKFDVIVL-RSAGVQLGGITM-DTMVADYLLNSGGRNHGLDD 555

Query: 112  VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            + +            K+LI              +     +        Y   DV V   +
Sbjct: 556  LAQR--RLDHTNLSIKDLI----------GTGKKQITMDQVPVDDVSPYACEDVDVPIRL 603

Query: 172  FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
               L                E  L  +   +   G  V+      +++  D +   L   
Sbjct: 604  APTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRAL 663

Query: 222  LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
            + S       +    ++L   LF E GL +   T+   +T   VLS        A  V  
Sbjct: 664  VFSAAGH-EFNLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVLQ 722

Query: 279  NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R  A++     ++ L + +    GR+  + +   A+ TGR S      QN+P  +   +
Sbjct: 723  YRQ-ATKLKNTYIDALPQLICDKTGRVHTSFRQDVAA-TGRLSSSEPNLQNIPIRTEQGK 780

Query: 338  ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R+   A  EG  L+ AD + IE RVLA  +G++
Sbjct: 781  A-------------------------IRAAFTAGREGWSLLGADYSQIELRVLAHYSGDE 815

Query: 397  WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              + A+    D++    A    +  ++VT D R I K +   + Y               
Sbjct: 816  ALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSP-----FGLAKT 870

Query: 457  LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
            L ++            + +   E F                 +G          R++   
Sbjct: 871  LGISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGR---------RREIKG 921

Query: 517  VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            V +L                                         LP  +     +    
Sbjct: 922  VRDL---------------------------------------AKLPESKRRSLTEP--- 939

Query: 577  RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
                        R            +Q  + D++   M+   +          ++L +HD
Sbjct: 940  -----------ERIAINMP------IQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHD 982

Query: 631  EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E++ E+PD +       +   MTS       +PLK +    + +
Sbjct: 983  ELLLESPDEELDALSDTIREAMTSVME--LDVPLKVDVAHGRTW 1024


>gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1]
          Length = 927

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 101/704 (14%), Positives = 205/704 (29%), Gaps = 167/704 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VM 53
           + +D ET S  ++             ++  +F             H+            +
Sbjct: 353 VALDTETTSLDEMA----------ARLVGISFSVAPGEAAYLPLAHEDPGTAGQLPLDEV 402

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111
              L+  LE+        +  +++ VL     + +  +    T++ +    +  P  L++
Sbjct: 403 LARLRPWLEDPAAAKCGQHIKYDQHVLANH-GILVQGY-VHDTMLQSYVLEVHRPHNLES 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L     + E          P  R        Y   D      +
Sbjct: 461 LAERH------------LGRSAMRYEDLCGKGAAQIPFARVPIERAAPYACEDAEQCLAV 508

Query: 172 FKRLEPLSSKE---QELWY-------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L P    +   Q ++        +   +   G  +D A     +Q +      L+ E
Sbjct: 509 HQVLWPQLQAQPALQRIYELEVAVSGVLWRMERHGVLIDAAELQRQSQALGERIRALEAE 568

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
             +L      +    +++    +    L +   T     +T + VL    +  P   +V 
Sbjct: 569 AHALAGMP-FNLGSPKQIAEVFYDRLKLPVLKKTATGAPSTDEEVLEKLAEDYPLPARVL 627

Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            +R    +      + L   +N   GR+        A  TGR +      QN+P  +   
Sbjct: 628 EHR-SLVKLKSTYTDKLPTMINPATGRVHTHFAQAVA-VTGRLASAEPNLQNIPIRTPEG 685

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R+  IA  G  +  AD + IE R++A ++ + 
Sbjct: 686 RR-------------------------IRAAFIAPPGHVIASADYSQIELRIMAHLSQDP 720

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AFE G D++  T A  F V+P  VT +QR   K +                    G
Sbjct: 721 ALLRAFEQGLDVHRATAAEVFGVSPEHVTPEQRRYAKTINF--------------GLIYG 766

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    A  +  +++                                +   + + ++ + 
Sbjct: 767 MSPYGLAKALGIDASA------------------------------AKSYIERYFERFAG 796

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V     +                                    +    GR LV  ++ + 
Sbjct: 797 VRAYMEQTRAQAR--------------------------ARGYVETVFGRRLVLPEIQSP 830

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                    +               +Q  + D++   M+   +A         +VL VHD
Sbjct: 831 NGPRRAAAERA---------AINAPMQGTAADLIKMSMVAVQRALDEQQRRTRMVLQVHD 881

Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E P+ +       +  LM +  +    +PL A       +
Sbjct: 882 ELVFEVPNEEVDWVRTEVPRLMAAVAT--LRVPLVASVGVGANW 923


>gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
 gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134]
          Length = 949

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/700 (15%), Positives = 217/700 (31%), Gaps = 163/700 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           +  D ET     L             ++  AF ++                  + + L+ 
Sbjct: 379 VCFDTETTGLDPLV----------AELVGVAFSWEAGKGYYIPFPESKDEAQALIEELRP 428

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-AL 116
             E+T +  +  N  ++  VL    ++ +   +   T++            +  + E  L
Sbjct: 429 FFEHTGIEKIGQNLKYDIKVLAKY-DVKVK-GKLFDTMLAHYLINPDMRHNMDVLAETYL 486

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             +   + E   LI +              K           EY   D  +T ++ +  E
Sbjct: 487 NYTPVSITE---LIGK---------KGKNQKSMRDVPLDQQTEYAVEDADITLQLKQHFE 534

Query: 177 PLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   +   G  +DV    +L+  ++ +  +L  E+    
Sbjct: 535 KELDEAGTRKLFNDIEIPLLRVLAAMEVEGINLDVNFLESLSGDLNADIERLTSEIYEEA 594

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281
                     ++L   LF +  L      T+    +T + VLS   K      +V + R 
Sbjct: 595 G-EEFKISSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDYR- 652

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+     ++ L E +  DGR+        A+ TGR S      QN+P  +        
Sbjct: 653 GLSKLKSTYVDALPEQVAQDGRVHTDYMQTVAA-TGRLSSNNPNLQNIPIRTERGR---- 707

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   +   E   L+ AD + IE R++A ++ E+  ++
Sbjct: 708 ---------------------QVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQ 746

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  GED++ +T A+ FNV   +VT++QR+  K +   +                G++  
Sbjct: 747 AFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGII--------------YGVSAF 792

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             ++                                       + +   + + + ++   
Sbjct: 793 GLSNQTD------------------------------LSRGEAKELIDNYYKSYPKLRNY 822

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            +EL     +                          N  +     R      + ++   +
Sbjct: 823 MSELVDFARE--------------------------NGYVKTVLDRRRYLNGINSSNGVV 856

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                +               +Q  + DI+   M+N  +          ++L VHDE+V 
Sbjct: 857 RGAAERN---------AVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVF 907

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + P+ +  +   ++   M S    A  +PL  E    + +
Sbjct: 908 DVPNIELDDIKNLIKTEMESAFKMA--VPLDVEVGVGQNW 945


>gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
 gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22]
 gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a]
          Length = 949

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 94/700 (13%), Positives = 198/700 (28%), Gaps = 159/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         D      + +  
Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN +   V  N  ++  VL+    +         T++            +  + E 
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNYGAVV--KGPLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K       +    Y   D  +T ++   L
Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVL 533

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   I   G  +D       +     +  ++++E+  L
Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYEL 593

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +   P   ++  +R
Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L   +N   GR+  +      + TGR S      QN+P    + +E 
Sbjct: 653 -GLKKLLGTYIDALPLLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  EG     AD + IE R++A ++ ++  +
Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +  D++  T A+ + +    V  D R   K                      G+++
Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANF--------------GIIYGISV 791

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +                                  + +   + + +  V  
Sbjct: 792 FGLAERMNVD------------------------------RKEAKELIDGYFETYPGVKA 821

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             ++  Q  ++                             +     R     D+ +  + 
Sbjct: 822 YMDKSIQVAQE--------------------------KGYVETIFHRKRFLPDINSRNAV 855

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
           +        R            +Q  + DI+   M    +          ++L VHDE+ 
Sbjct: 856 VRGY---AERNAINAP------IQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELN 906

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              P  ++     +        ++   +PLKA+    K +
Sbjct: 907 FSVPVNEKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945


>gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
 gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147]
          Length = 930

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 206/703 (29%), Gaps = 162/703 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMP 54
            + +D ET S   +          +  ++  +  F           H           + 
Sbjct: 354 QIGLDTETTSLDPM----------NARLVGISMAFAAGEAVYIPINHTFAEQQLSWETLL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112
             LK  LE+  +  +  N  +++ V      + +        ++ +          L  +
Sbjct: 404 GSLKPYLESKTLLKIGQNLKYDQHVFANH-GIQLQGIA-GDAMLASYVLESHLGHGLDEL 461

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            +           G E I      E+      +       +     EY   D      I 
Sbjct: 462 AQRW--------LGLETITY----ESLCGKGAKQISFADVSVEQATEYACQDADFALRIE 509

Query: 173 KRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             L+              E  +  +   +   G  +D A     +  +  E  KL+Q+  
Sbjct: 510 AHLKAQMSDEQRKMYEEMELPVAQVLFHMERNGVLIDRAELAQQSAELGAELLKLEQQAY 569

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQVF 277
            L      +    ++L+  LF + G+  + L +      +T + VL       P    + 
Sbjct: 570 DLAGQP-FNLNSPKQLQEILFTKLGIPTKGLKKTSTGSISTNEAVLEQLAMDYPLPKIIL 628

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            NR   ++      + L E +N +     T      + TGR +      QN+P  +    
Sbjct: 629 QNR-SLAKLKSTYTDKLPEMINPNTHRIHTNYAQAVAITGRLASNNPNLQNIPIRTSEGR 687

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   IA E   +V AD + IE R++A ++G+  
Sbjct: 688 R-------------------------VRRAFIAPENSVIVSADYSQIELRIMAHLSGDAT 722

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF+ GED++  T A  F + P  +T +QR   K +                    G+
Sbjct: 723 LIEAFKNGEDVHRRTAAEVFGMQPENITPEQRRYAKTIN--------------FGLIYGM 768

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  +  ++A                                +   K +  +++ V
Sbjct: 769 SSYGLAKSLGIDNAS------------------------------ADMFIKRYFARYTGV 798

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           ++      +                             +   +    GR L   D+    
Sbjct: 799 ADYMQRTKEQA--------------------------ADLGYVETLFGRRLYLPDIHAKN 832

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDE 631
           +          R            +Q  + D++   M+              + + VHDE
Sbjct: 833 A---QARAGAERAAINAP------MQGTASDLIKRAMIAVDDFLLSGSLKTRLTMQVHDE 883

Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E P +++      +  LM S       +PL AE    K +
Sbjct: 884 LVLEVPKSEQERIVQNIPALMASVGKGVLDVPLVAEVGIGKNW 926


>gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301]
 gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301]
          Length = 892

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 105/704 (14%), Positives = 189/704 (26%), Gaps = 170/704 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMP-----QVL 57
            ID ET                   ++  +              H   P +P     + L
Sbjct: 320 AIDTETTGLNP----------RHAKLVGISVATAPGRAAYIPLGHEDGPQLPRPLALERL 369

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              L +  +  + HN+ F+  VL+     D        T++++ + G             
Sbjct: 370 APVLADPSILKIFHNAKFDLHVLERAGLAD--ATPVDDTMLMSYTLG--------AGRHG 419

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT--------- 168
               ++     L  R    +                      Y   D  VT         
Sbjct: 420 HGMDELSALH-LDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRP 478

Query: 169 -------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
                    +++ +E           +   +   G  VD A   +++         + +E
Sbjct: 479 RLRTEAALALYETMERRL------LSVLLGMERAGIMVDRADLESMSAEFARRMDDIQRE 532

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
           +E L      +    ++L   LF E GL     T+T    T   VL              
Sbjct: 533 IEKLAGRA-FNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRV 591

Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
               +  +      + LV  ++ +D R+  +      + TGR S      QN+P  +   
Sbjct: 592 LEWRQLQKLKSTYADALVGEIDIADQRVHTSFSQAITT-TGRLSSNEPNLQNIPIRTSEG 650

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA+ GK L+ AD + IE R+LA +A   
Sbjct: 651 -------------------------ARIRRAFIAAPGKALISADYSQIELRLLAHVADIP 685

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              ++F  GED++  T A  F +    +    R   K +                    G
Sbjct: 686 ALKESFAKGEDIHARTAAEVFGLPMEGMDPMVRRRAKAINF--------------GIIYG 731

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +     +  +R   A+  ++  
Sbjct: 732 IS------------------------------AFGLARQLGIENSEAKRFIDAYFARYPE 761

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +    NE  +                              +  ++ P GR      +   
Sbjct: 762 IRRYMNETAEFART--------------------------HGYVLTPFGRRCYVPGITEK 795

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                       R+            Q  + DI+   M+    A         ++L VHD
Sbjct: 796 NPARRGY---AERQAINAPL------QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHD 846

Query: 631 EIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E P       + L   +M    S    +PL  E      +
Sbjct: 847 ELVFEAPKDQAEATAKLACAVMQGAAS--LSVPLLVETGIGANW 888


>gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype']
          Length = 930

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 203/703 (28%), Gaps = 162/703 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           +  D ET S   +          D  ++  +F  ++         HD            +
Sbjct: 353 IAFDTETTSLNYM----------DAELVGVSFCIEEGEAAYVPVAHDYPDAPTQLSREFV 402

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
              LK  LE++++  V  +  +++ VL    ++ +       T++ +           + 
Sbjct: 403 LDALKPILESSNIIKVGQHIKYDKNVLANY-DITLNGIG-FDTMLESYVLNSTAQRHDMD 460

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           ++  A          G + I      E       +    ++ A    G Y   D  +T  
Sbjct: 461 SLALAY--------LGHKTIHF----EDIAGKGAKQLTFNQIALEEAGPYAAEDADITLR 508

Query: 171 IFKRLEPLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +   +     +  EL             +   +   G  +D       +Q +     +L+
Sbjct: 509 LHNTIWAKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQRLSQQSQDLAARIAELE 568

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           +E+         +    ++L+  LF +  L +   T     +T + VL       P   +
Sbjct: 569 KEVHEEAG-EPFNLGSTKQLQHILFEKMSLPIIKKTPKGAPSTSEDVLQELALEYPLPKK 627

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++      + L + +N       T      + TGR S      QN+P  +  
Sbjct: 628 IMEYR-GLTKLKNTYTDKLPKMINHRTGRVHTSYHQAITATGRLSSTDPNLQNIPIRNEE 686

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       VR   +  +G K V AD + IE R++A ++G+
Sbjct: 687 GRR-------------------------VRQAFVPRKGNKFVAADYSQIELRIMAHLSGD 721

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T +  F V   +VT +QR   K +   L Y   A          
Sbjct: 722 KGLLDAFAHGKDIHKATASEVFGVPLDEVTTEQRRSAKAINFGLIYGMSA-----FGLAK 776

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+         +   E +     +    +E+  E    +   G          R    
Sbjct: 777 QLNIPRNEAQKYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGR---------RLYLP 827

Query: 516 RVS----ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            +            +A       G A    K   + +                       
Sbjct: 828 DIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKVDDWISKN---------------- 871

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                                             + D               +++ VHDE
Sbjct: 872 ----------------------------------AAD------------DVTMMMQVHDE 885

Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  +    +    +  LM S  +    +PL  E    + +
Sbjct: 886 LVFEIKEDKVDSYVKTINTLMESAAT--LNVPLVVEAGVGENW 926


>gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 927

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/700 (16%), Positives = 214/700 (30%), Gaps = 155/700 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + +D ET S  +L             ++  +F  +          H             +
Sbjct: 353 VALDTETTSLDELR----------AEIVGLSFSVEPGAAAYIPLAHSGPDAPEQLPLDAV 402

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111
            + LK  LE+     +  +  ++R V     ++ +  +    T++ +    +  P  L +
Sbjct: 403 LERLKPWLEDGSRAKLGQHVKYDRHVFANH-DIGVRGY-VHDTMLQSYVLEVHKPHNLAS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E           G+  I+     E       +  P  +        Y   D   T ++
Sbjct: 461 LAERH--------TGRTGISY----EDLCGKGAKQIPFAQVPVEQAAAYSCEDSDQTLDV 508

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L PL   +           E   +   I   G  +D A     +  +     KL+QE
Sbjct: 509 HRVLWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDPATLQQQSHDLGQRILKLEQE 568

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L    F + GL +   T     +T + VL    +  P   ++ 
Sbjct: 569 AYDIAGQP-FNLGSPKQLGEIFFDKLGLPVVKKTATGARSTDEEVLEKLAEDYPLPAKIL 627

Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            +R   S+      + L +  +   GR+        A  TGR S      QN+P  +   
Sbjct: 628 EHR-SLSKLKGTYTDKLSQLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIPIRTSEG 685

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      VR   +A  G+ +  AD + IE R++A ++G+ 
Sbjct: 686 RR-------------------------VREAFVAPPGRVIASADYSQIELRIMAHLSGDD 720

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF  G D++  T A  F VA  QV+ +QR   KV+   L Y               
Sbjct: 721 ALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMS-----SFGLARN 775

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L ++  A     +   + +   + +    + +       +   G          R     
Sbjct: 776 LGIDNKAAAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGR---------RLYLPE 826

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           ++                                            P+G      +    
Sbjct: 827 INS-------------------------------------------PNGPRRGAAERAAI 843

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
            + +  T   L ++           VQ          +++A K    +++ VHDE+V E 
Sbjct: 844 NAPMQGTAADLIKKAMVA-------VQ---------AVLDADKPQVLMIMQVHDELVFEL 887

Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P+ +       +  LM         +PL AE      + K
Sbjct: 888 PEEEAGWLRTEIPRLMAGVAE--LKVPLLAEVGTGPNWEK 925


>gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
 gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5]
          Length = 988

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 100/719 (13%), Positives = 198/719 (27%), Gaps = 181/719 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------DPV 52
           ID ET S           Y     ++  +F    H        H                
Sbjct: 396 IDTETTS----------VYWRQAELVGLSFAVQAHEAYYIPLTHALEGDELIAKQLDRDT 445

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKAC-----FNLDIPIHRWI-CTLVLARSNGL- 105
           +   LK  LEN ++  +  +  ++  +L         N+    + W   T++ +      
Sbjct: 446 VLARLKPILENPNIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAA 505

Query: 106 --PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                +  +                L  +    E       +     + A  +  +Y   
Sbjct: 506 ITRHGMDDLARHY------------LQTQTISFEDVAGKGAKQVSFDQVAIDIASDYACE 553

Query: 164 DVTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           D  +T ++F                    E     +   +   G  +     + L++  D
Sbjct: 554 DADITYQLFDLFSKKLADDTNNAKLLHELEIPTAEILCQMEANGILIRRPFLNELSKRFD 613

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268
            E   L++    +      +    ++L   LF + G+     T+    +T + VLS    
Sbjct: 614 EEIIALEKRAYEVAG-EEFNLGSPKQLGEMLFDKLGVVGGKKTKTGQYSTGEAVLSKI-- 670

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P        R   S+      + L    ++      T      + TGR S      QN
Sbjct: 671 DHPLVDITLEYR-GLSKLKSTYTDALDNVADAKTDRVHTSYHQALTSTGRLSSTDPNLQN 729

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  + +                            +R   IA EG+ ++ AD + IE R+
Sbjct: 730 IPIRTATGR-------------------------LIRQAFIAPEGRVILAADYSQIELRL 764

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A  +G++    AF  G D++  T A       A+VT  +R   K +             
Sbjct: 765 MAHFSGDKNLTHAFNEGLDIHAATAAEVLGKEVAEVTATERRNAKAINF----------- 813

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G++    A  ++                                 +  +    
Sbjct: 814 ---GLLYGMSAFGLAKQLQM------------------------------SRSEAQDYID 840

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            + +++  V +       +  +                          +  +    GR L
Sbjct: 841 MYFERYPGVKDYMINTRASAYE--------------------------HGYIETILGRKL 874

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI 624
              D+ ++   +        R             Q  + D++   M+   K        +
Sbjct: 875 YTPDINHSNRMVKQ---GAERAAINAPL------QGSAADLIKLAMIAVDKVLPKEQAKM 925

Query: 625 VLTVHDEIVCETPDTDEFNASM-LYHLM-----TSNPS--WAKG--LPLKAEGYESKRY 673
           +L VHDE+V E         S  + + M      +     W     +PL  E    + +
Sbjct: 926 LLQVHDELVFEVDADKVDEISQLITNAMQDVLTATAVEKGWNVNFAVPLLVETDSGQNW 984


>gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu]
          Length = 917

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/701 (15%), Positives = 201/701 (28%), Gaps = 162/701 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +T            ++  +F  +          H             + 
Sbjct: 343 AFDTETTSLDPMT----------ARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDEVL 392

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ D   V  +  ++  VL     +++       TL+ +              
Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-GIELSGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A     EY   D  +T ++   
Sbjct: 451 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHHA 500

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D A     +  +     +L+ +  
Sbjct: 501 LYPQVAREPGLERVYREIEMPVSIVLRKMERTGVLIDDARLQAQSTEIATRLVELEAQAY 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N +     T      + TGR +      QN+P  +      
Sbjct: 620 R-GLSKLKSTYTDKLPRMVNPETGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 677

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IAS G ++V AD + IE R++A ++G+   L
Sbjct: 678 ------------------------IREAFIASPGHQIVSADYSQIELRIMAHISGDASLL 713

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+                    G++ 
Sbjct: 714 RAFSNGEDIHRATAAEVFGVTPLEVTADQRRIAKVINF--------------GLIYGMS- 758

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A        A +     +  ++  V++
Sbjct: 759 -----------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVAQ 789

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
              +     ++                             +    GR L   ++      
Sbjct: 790 YMEDTRAIAKE--------------------------KGYVETVFGRRLWLPEINGGNGP 823

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633
                    R            +Q  + D++   M+              +++ VHDE+V
Sbjct: 824 RRQA---AERAAINAP------MQGTAADLIKLSMIAVDDWLTRDGLASRMIMQVHDELV 874

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P+ +       L  +M         +PL AE      +
Sbjct: 875 LEVPEAELPRVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
 gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135]
          Length = 931

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 92/701 (13%), Positives = 208/701 (29%), Gaps = 161/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
               +D ET     +T            ++  +F F ++         +      +  + 
Sbjct: 359 KFFSLDTETTGIDPIT----------AELVGMSFSFAENQAFYVPVPANREEALTIVNIF 408

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K A EN D   +  N  ++  +L     + +   +   T++            +  + E 
Sbjct: 409 KPAFENPDSLKIGQNIKYDLIMLANY-GVTLK-GKMFDTMIAHYVLQPELRHGMDYLAEI 466

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +  + +ELI              +       A     +Y   D  VT ++ + L
Sbjct: 467 Y--LKYETIKIEELIG---------AKGKKQGNMRDLAPEAVYKYACEDADVTLKLKQVL 515

Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E                  L  +   +   G  +D       ++       ++++E+  L
Sbjct: 516 ENELETNGVKKLFEEIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHQL 575

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF    +      T+T    T + VL S +       ++  +R
Sbjct: 576 AGM-EFNIASPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR 634

Query: 281 MRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P  +   +E 
Sbjct: 635 -GLKKLLGTYIDALPQLINPATGRIHTSFNQ-TVTATGRLSSSNPNLQNIPIRNEDGKE- 691

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  EG +   AD + IE R++A ++ +   +
Sbjct: 692 ------------------------IRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMI 727

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+  +D++  T A+ + V   +VT++QR+  K     +                G+++
Sbjct: 728 EAFQKDQDIHAATAAKIYKVKLEEVTREQRSKAKTANFGII--------------YGISV 773

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +                                  + +   + + +  V  
Sbjct: 774 FGLAERLNVD------------------------------RKEAKALIDGYFENYPNVKA 803

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             ++  Q   +                             +     R     D+ +  + 
Sbjct: 804 YMDQSIQEARE--------------------------KGYIETIFKRKRYLPDINSKNAV 837

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
           +        R            +Q  + DI+   M+   +          ++L VHDE+ 
Sbjct: 838 VRGY---AERNAINAP------IQGSAADIIKVAMIRIYQRFQEEGIRSKMILQVHDELN 888

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++     +    M +   +    PL+A+      +
Sbjct: 889 FSVLPEEKEKVQQIVISEMEAA--YKMKAPLRADHGWGHNW 927


>gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
 gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594]
          Length = 948

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/715 (15%), Positives = 200/715 (27%), Gaps = 169/715 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------ 49
             + +D ET +   +             ++  +     +        H            
Sbjct: 356 RIIAVDTETSALDAMR----------ADLVGISLATGANEACYIPLGHLNDGGGGSDMFS 405

Query: 50  --DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                +P       LK  LE+  V  +  N  ++  VL       I +     T++L+  
Sbjct: 406 EKPEQVPLDDAVAALKPLLESDAVLKIGQNIKYDLNVLARY---GIAVAPIDDTMILSFD 462

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                +   VG        ++ E   L       +       +  P          EY  
Sbjct: 463 LDAGRSEGGVG---GHGMDELSERH-LGHTPLSFKEVCGTGRKQIPFGEVPLDKATEYAA 518

Query: 163 GDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            D  VT  + + L+P  + E            L  +   +   G  VD A    L++   
Sbjct: 519 EDADVTWRLHQHLKPRLAIEHGARIYERVDRPLIPVVAQMERHGIKVDRARLAKLSEEFA 578

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKK 268
            E  KL++ +  L      +    ++L   LF + G            +T Q VL     
Sbjct: 579 TETAKLEKTIHELAG-KEFTVGSPKQLGEVLFDDLGHKGGKKGKSGQYSTDQSVLERLSG 637

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
              +         + ++      + L +A+N D     T   L  ++TGR S      QN
Sbjct: 638 DGAEIADKVLEWRQLTKLKSTYTDALQQAINPDTGRVHTSYSLVGAQTGRLSSTDPNLQN 697

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +                              +R   +   G  L+ AD + IE R+
Sbjct: 698 IPIRTPIGR-------------------------QIREAFVPENGNVLLAADYSQIELRL 732

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            A MA      +AF  GED++  T    +     +  +D RA  K +  A+ Y       
Sbjct: 733 AAHMADVPELKEAFAEGEDIHARTAREMYG----EADRDTRARAKTINFAILYG-----I 783

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            +      L +                                            + +  
Sbjct: 784 SRWGLAGRLKIEP---------------------------------------DEAQELID 804

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            + ++   +    +E  +   +                                  GR  
Sbjct: 805 TYFKRFPGIQSYIHETLETVRE--------------------------RGYSETLFGRKT 838

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY-- 622
            +  +G+        +    R            +Q  S DI+   M         AG   
Sbjct: 839 WFPRIGSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMARMMPALEDAGLEH 889

Query: 623 -DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE+V E P+ D   AS +   +M     P+    +PL  E      +
Sbjct: 890 VRMLLQVHDELVFELPEGDVEAASPIIERVMAEAALPAVELSVPLGIEIGTGASW 944


>gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
 gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506]
          Length = 971

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/719 (14%), Positives = 210/719 (29%), Gaps = 181/719 (25%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------------- 49
             D ET              A    ++  +              H               
Sbjct: 380 AFDTETSELS----------AYKGHLVGVSMAITPGEAAYVPLGHVAADADLLTDPDSAE 429

Query: 50  --DPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                +P       LK+ LE+  +  +  N  ++  V+       I +     T++++ +
Sbjct: 430 ALGGQIPMDEALVALKDVLEDKSILKIGQNVKYDLLVMLQH---GIAMTPIDDTMLISYA 486

Query: 103 NGLP-----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                      +  + E           G + I+     +         KP         
Sbjct: 487 LDASSGLAGHGMDELSERF--------LGHKPISY----KELCGSGRSAKPIAAVEIDRV 534

Query: 158 GEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTL 207
            EY   D  VT  I++ L+P              E+ L  +   +  RG  VD  +   L
Sbjct: 535 TEYASEDADVTLRIWQVLKPRLAAEGLAHVYERLERPLAPVLARMEQRGIMVDRQILSRL 594

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263
           +     ++  L+ E+  +      +    ++L   LF + GL     T++    T  RVL
Sbjct: 595 SGNFAQKQAALEDEIAKMAG-EEFNPGSPKQLGEILFGKLGLPGGKKTKSGQWSTDARVL 653

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                   +  +   +  + ++      +TL   M+ +GR+  +     ++ TGR S   
Sbjct: 654 EDLAAEGHELPRRVVDWRQLTKLKGTYTDTLPHHMDENGRIHTSFSMA-STTTGRLSSSE 712

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  +                              +R+  +A +GKKL+ AD + 
Sbjct: 713 PNLQNIPVRTEEGRA-------------------------IRTAFVAPKGKKLLSADYSQ 747

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA +A       AF+ G D++  T +  FNV    +    R   K +        
Sbjct: 748 IELRILAHIADIPQLKDAFQNGVDIHAMTASEMFNVPVEGMEPSVRRRAKAINF------ 801

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++    A+ +                                     
Sbjct: 802 --------GIIYGISAFGLANQLAI------------------------------PREEA 823

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
            +  K + ++   + +  ++     ++                          +  +   
Sbjct: 824 GQYIKRYFERFPGIRDYMDKTKAFAKK--------------------------HGYVETL 857

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618
            GR   Y D+               R            +Q  + DI+   M+        
Sbjct: 858 FGRRAHYPDITAKNP---QIRSFNERAAINAP------IQGTAADIIRRAMVRMEGALAD 908

Query: 619 -KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN--PSWAKGLPLKAEGYESKRY 673
                 ++L VHDE+V E  + +      +  ++M +   P     +PL+ E   +  +
Sbjct: 909 ANLSAMMLLQVHDELVFEVEEDEIDETIEVVTNIMEAAASPRVILSVPLEVEAKAALNW 967


>gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila]
          Length = 893

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 117/703 (16%), Positives = 213/703 (30%), Gaps = 165/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL 57
            +D ET S              D  ++  +  F           H       +  + + L
Sbjct: 321 AVDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           KE LE+    IV  N  F+  VL       +P H    T++ A           L  +  
Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPH--FDTMIAAYLIEPNEKKFNLDDLA- 427

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            LK    KM   +EL++                            Y   D  +T  ++K 
Sbjct: 428 -LKFLGYKMTSYQELMSFSSP--------LFGFSFADVPVEKAANYSCEDADITYRLYKT 478

Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L                E  L  +   +   G  VD      L++    +  +L +E+  
Sbjct: 479 LSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL-EDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +      +    +++   LF + G+      T+    +T   VL            +   
Sbjct: 539 IAG-EPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R +  +     ++ L + +N   GR+  +    G + TGR S      QNLP  S   +E
Sbjct: 598 R-KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLPTKSEEGKE 655

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397
                                    +R  ++       +V AD + IE R+LA ++G++ 
Sbjct: 656 -------------------------IRKAIVPQDPNWWIVSADYSQIELRILAHLSGDEN 690

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAFE G D++  T +R FNV P +VT++ R               A      +   G+
Sbjct: 691 LLKAFEEGIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGV 736

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                +                              +         E++   +   + +V
Sbjct: 737 TPYGLS------------------------------VRLGVPVKEAEKMIVNYFVLYPKV 766

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +    +    ++                             +    GR      +    
Sbjct: 767 RDYIQRVVSEAKE--------------------------KGYVRTLFGRRRDIPQLMARD 800

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
                T  +  R            +Q  + DI+   M+         K    +++ VHDE
Sbjct: 801 ---RNTQAEGERIAINTP------IQGTAADIIKLAMIEIDRELKESKMKTKMIIQVHDE 851

Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E PD ++     ++   MT+       +PL+ +    K +
Sbjct: 852 LVFEVPDEEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892


>gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39]
 gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39]
          Length = 937

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 199/700 (28%), Gaps = 162/700 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKE 59
           +  D ET              A    ++  +F              +      +    K 
Sbjct: 366 ISFDTETTGTD----------ANLAELVGLSFSVKPGAGYYIPLPPERTLAQPILDEFKV 415

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117
            LEN ++  +  N  ++  +LK    L+I   +   T++            +  + E   
Sbjct: 416 VLENENIAKIGQNIKYDMLILKWY-GLEIK-GKLFDTMLAHYLIDPDTRHNMDVLSE--N 471

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                     +LI                            +Y   D  VT ++     P
Sbjct: 472 YLCYSPISITKLIG---------PKGKNQGNMRDVPVAQVVDYAAEDADVTLQLANVFRP 522

Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           +             E  L Y+   I   G  +D+      ++ ++ +  K ++ +     
Sbjct: 523 MLKDLNAEQLATEVENPLIYVLADIESEGVRIDIETLVNYSKELETDIRKFEKNVYDKCG 582

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    ++L   LF    L  +   T+T    T + VL +    +     + + R  
Sbjct: 583 V-EFNLASPKQLGEVLFDRLQLDPKAKKTKTGQYQTGEDVLLALASKSDIVQDILDFRQ- 640

Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             +     ++ L   +N   GR+  +     A+ TGR S      QN+P  +    E   
Sbjct: 641 LQKLKSTYVDALPLLVNPKTGRVHTSYNQAVAA-TGRLSSNNPNLQNIPIRTERGRE--- 696

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   I   E   L+ AD + IE R++A ++ E+  L+
Sbjct: 697 ----------------------VRRAFIPRDENHVLLSADYSQIELRIIADISKEENMLQ 734

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T A+ + VA  +VT  QR   K                      G +  
Sbjct: 735 AFNQGLDIHTATAAKVYGVAIEEVTSTQRRNAKA--------------VNFGIIYGQS-- 778

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           +            +   +  ++  + + 
Sbjct: 779 ----------------------------AFGLSQSLGIPRKEAAEIIDQYFTQYPGIKKY 810

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            ++      +                          N  +    GR    RD+ +     
Sbjct: 811 MSDTMNFARE--------------------------NGFVETILGRRRYLRDINSANQ-- 842

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVC 634
            T      R            +Q  + D++   M+N  K          + + VHDE+V 
Sbjct: 843 -TVRGFAERNAINAP------IQGSAADMIKVAMINIHKDMNARGMKSKMTMQVHDELVF 895

Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +   T+      +    M +    A  +P++ E  +   +
Sbjct: 896 DVLKTEVDEMKEIISHRMKTAI--ATTVPIEIEIGQGNNW 933


>gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1]
 gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1]
          Length = 920

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/702 (15%), Positives = 202/702 (28%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F  +          H             + 
Sbjct: 346 AFDTETTALDPMV----------ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVL 395

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ D   V  +  ++  VL     +++       TL+ +              
Sbjct: 396 ARLKSWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 453

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A     EY   D  +T ++ + 
Sbjct: 454 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHRA 503

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D A     +  +      L+ +  
Sbjct: 504 LYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIATRLVDLEAQAY 563

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 564 ALAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 622

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N   GR+        A  TGR +      QN+P  +     
Sbjct: 623 R-GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 680

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA+ G ++V AD + IE R++A ++G+   
Sbjct: 681 -------------------------IREAFIAAPGHRIVSADYSQIELRIMAHISGDASL 715

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F V P +V  DQR I KV+                    G++
Sbjct: 716 LRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVIN--------------FGLIYGMS 761

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A        A +     +  ++  V+
Sbjct: 762 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 791

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +     ++                             +    GR L   ++     
Sbjct: 792 QYMEDTRATAKE--------------------------RGYVETVFGRRLWLPEINGGNG 825

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                     R            +Q  + D++   M+         K    +++ VHDE+
Sbjct: 826 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDEL 876

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E PD +       L  +M         +PL AE      +
Sbjct: 877 VLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 916


>gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17]
 gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17]
          Length = 926

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 105/706 (14%), Positives = 197/706 (27%), Gaps = 170/706 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S          +Y     V+  +F             HD            + 
Sbjct: 350 AFDTETTSL---------RYMA-AEVVGVSFAVQPFEAAYVPFCHDYMGAPEQLDRDTVL 399

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110
             LK  LE+ D   V  N  +++ VL      DI +      T+V +           + 
Sbjct: 400 AQLKPLLESPDHKKVGQNLKYDKNVLANH---DICLEGIAEDTMVQSYVLNSVSSRHNMD 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           A+                L       E+      +    ++      G Y   D  +T  
Sbjct: 457 ALALHY------------LGEETTTFESLAGKGAKQLTFNQLELDKAGPYAAEDADITLR 504

Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L P               +  L  +   +  RG  +  +     +Q +     +L+
Sbjct: 505 LHQALRPQLAATGKLQSVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAELE 564

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
                       +    ++L+   + + GL +   T     +T + VL            
Sbjct: 565 TAAYEAAG-ETFNLGSPKQLQVIFYEKLGLPVLKKTPKGAPSTAEPVLQELAHRHELPRL 623

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R   S+      +TL E ++       T      + TGR S      QN+P  S  
Sbjct: 624 LLEHR-SLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSSSEPNLQNIPIRSEQ 682

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A +G KL+ AD + IE R++A ++ +
Sbjct: 683 GRR-------------------------IRQAFVAEKGYKLLAADYSQIELRIMAHLSED 717

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  GED++  T A  F V   +V  DQR   K +                    
Sbjct: 718 KGLLTAFAKGEDIHKATAAEVFGVTLEEVNTDQRRSAKAINF--------------GLIY 763

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    A  +                                     ++    + +++ 
Sbjct: 764 GMSAFGLARQLDVE------------------------------RKVAQQYIDRYFERYP 793

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V    + + +   +                          +  +    GR L   ++  
Sbjct: 794 GVLTYMDNIRKQAHE--------------------------DGYVETLFGRRLYLPEINT 827

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTV 628
                    +   R            +Q  + DI+   M+   +           + + V
Sbjct: 828 RN---KQLQQAAERTAINAP------MQGTAADIIKLAMIEVERWLLAEYPDSARMTMQV 878

Query: 629 HDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE++ E  +         L   M+     A  +PL  E      +
Sbjct: 879 HDELIIEVKEEAVEVVREGLIKRMSGAAELA--VPLLVEAGVGDNW 922


>gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M]
 gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M]
          Length = 913

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/701 (15%), Positives = 203/701 (28%), Gaps = 162/701 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 339 SFDTETTSLDPMV----------AQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLPRDEVL 388

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ +   V  +  ++  VL     +++       TL+ +              
Sbjct: 389 AKLKPWLESAEHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLQSYVLESHRPHDMDNL 446

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A     EY   D  +T  + + 
Sbjct: 447 ALRHLGIKTI----------KYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQT 496

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E     + + +   G  +D       +  +     +L+ E  
Sbjct: 497 LYPQLAAEETLEHVYRDIEVPTSRVLRKMERSGVLIDAEKLRQQSSEIATRLIQLESEAY 556

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 557 VLAGG-EFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEH 615

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N++     T      + TGR +      QN+P  +      
Sbjct: 616 R-GLSKLKSTYTDKLPRMVNANTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRR- 673

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G KLV AD + IE R++A ++G++  L
Sbjct: 674 ------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLL 709

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F+V P +V+ DQR + KV+                    G++ 
Sbjct: 710 RAFSEGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSS 755

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A        A +     +  ++  V+ 
Sbjct: 756 FGL------------------------------ASNLGITRDAAKLYIDRYFARYPGVAR 785

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             +E   + +                              +    GR L   ++      
Sbjct: 786 YMDETRLSAK--------------------------AKGYVETVFGRRLWLPEINGGNGP 819

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633
                    R            +Q  + D++   M+   K       G  +++ VHDE++
Sbjct: 820 RRQA---AERAAINAP------MQGTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDELI 870

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E PD +  +    L  LM      A  +PL AE      +
Sbjct: 871 LEVPDEELSDVRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909


>gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49]
          Length = 641

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/702 (15%), Positives = 201/702 (28%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 67  AFDTETTSLDPMV----------AQLVGLSFSTEPGKAAYLPVAHRGPDLPEQLPLDDVL 116

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ +   V  +  ++  VL     +++       TL+ +              
Sbjct: 117 ARLKPWLESAERKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 174

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A     EY   D  +T ++   
Sbjct: 175 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHHA 224

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D A     +  +     +L+ +  
Sbjct: 225 LYPQVAREPGLQRVYREIEMPVSLVLRKMERTGVLIDDARLQAQSTEIATRLIELEGQAY 284

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 285 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 343

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N   GR+        A  TGR +      QN+P  +     
Sbjct: 344 R-GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 401

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G ++V AD + IE R++A ++G+   
Sbjct: 402 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 436

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F V P +V  DQR I KV+                    G++
Sbjct: 437 LRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVIN--------------FGLIYGMS 482

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A        A +     +  ++  V+
Sbjct: 483 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 512

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +     ++                             +    GR L   ++     
Sbjct: 513 QYMEDTRTVAKE--------------------------KGYVETVFGRRLWLPEINGGNG 546

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                     R            +Q  + D++   M+         K    +++ VHDE+
Sbjct: 547 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDEL 597

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E PD +       L  +M         +PL AE      +
Sbjct: 598 VLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 637


>gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
 gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010]
          Length = 920

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 192/700 (27%), Gaps = 159/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57
             L +D ET S   +             ++  +F  ++          D         + 
Sbjct: 348 KVLSLDTETTSTDTM----------QAELVGLSFAIEEKKAFYVAIPSDRREAEKFVNIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           +   EN ++  V  N  ++  VL     +DI   +   T++            +  + E 
Sbjct: 398 RPLYENENILKVGQNIKYDYEVLAQY-GIDIK-GKMFDTMIAHYLIQPELHHNMDYMAET 455

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L     K     ELI                K     +     EY   D  +T +++K L
Sbjct: 456 L--LGYKTVHIDELIG---------AKGKHQKNMRDLSPTDIYEYASEDADITLQLYKVL 504

Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L  +   +   G C+D       ++I      + +  +   
Sbjct: 505 EPKLKEVNAEDLFWKIEMPLVRVLADMEMNGVCLDTDALAETSKIFTDRMNEYEALIYEQ 564

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +   P    +   R
Sbjct: 565 -ASEKFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLEASAPIVGNILKYR 623

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L + +N       T      + TGR S      QN+P  +   +E  
Sbjct: 624 -GIKKLLSTYIDALPKLINKRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKE-- 680

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R C I         AD + IE R++A ++ ++  ++
Sbjct: 681 -----------------------IRKCFIPEPKCLFFSADYSQIELRIMAHLSQDENMME 717

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ ++V   +V+  QR   K                      G+   
Sbjct: 718 AFRSGHDIHRATAAKIWHVPMEEVSDAQRKKAKQANF--------------GIIYGITTY 763

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A                                        + + + + +    V   
Sbjct: 764 GLAQR------------------------------MGIPNGEAKELIEGYFKTFPSVKAF 793

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             +  Q   +                                   R     D+ +     
Sbjct: 794 MEKAKQTARE--------------------------KGYAETLFNRRRYLSDINSKN--- 824

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            T      R            +Q    DI+   M+              ++L VHDE+  
Sbjct: 825 GTVRGFAERNAINAP------IQGTEADIIKVAMIRIWERFRRENIRSKMILQVHDELNF 878

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                ++     +    M +   +   +PL A+      +
Sbjct: 879 SVFPEEKEKVERIVIEEMQAA--YPLNVPLVADAGWGNNW 916


>gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
 gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970]
          Length = 939

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/712 (14%), Positives = 206/712 (28%), Gaps = 171/712 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
            + ID ET S            A +  ++  +  F           H             
Sbjct: 354 KIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQY 403

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110
           +   LK  LEN+ +  +  N  +++ V      + +        ++ +          L 
Sbjct: 404 VLDRLKPHLENSALKKIGQNLKYDQHVFANY-GIALNGI-VGDAMLASYIIESHLGHGLD 461

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +             G+ L       E+      +       A     EY   D      
Sbjct: 462 ELS------------GRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALR 509

Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +   L               E  +  +   +   G  +D A     +  +  E  KL+QE
Sbjct: 510 LEAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQE 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQ 275
             +       +    ++L+  LF + G+  + L +      +T + VL       P    
Sbjct: 570 AYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKI 628

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  NR   ++      + L E ++   +   T      + TGR +G     QN+P  +  
Sbjct: 629 ILKNR-SLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRLAGNNPNLQNIPIRTEE 687

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             +                         VR    A  G  +V AD + IE R++A ++G+
Sbjct: 688 GRK-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSGD 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+ GED++  T A  F +AP  V+ +QR   K +                    
Sbjct: 723 KTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGLIY 768

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +  ++                                 +     +  ++ 
Sbjct: 769 GMGQYGLAKSLGIDNLS------------------------------AKNFIDRYFARYP 798

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V+E      +                                 +    GR L   D+ +
Sbjct: 799 GVAEYMQRARECA--------------------------AGQGYVETLFGRRLYLPDIRH 832

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------------AGY 622
             +       +  R            +Q  + D++   M++ ++                
Sbjct: 833 TNA---NIRARAERAAINAP------MQGTASDLIKRAMIDVSRWLSECEASPWDDLLQS 883

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +++ VHDE+V E P+ +       L  +M +       +PL AE      +
Sbjct: 884 KLIMQVHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLAAEVGAGMNW 935


>gi|332531416|ref|ZP_08407320.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
 gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624]
          Length = 924

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/704 (15%), Positives = 200/704 (28%), Gaps = 159/704 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + +D ET S  ++             ++  +F            +HD            +
Sbjct: 346 VALDTETTSLDEMV----------AEIVGISFSVTPGEAAYIPLMHDYPDAPAQLPRDEV 395

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111
              LK  LEN     +  +  ++R V      +++  +    T++ +    +  P  L +
Sbjct: 396 LAKLKGWLENPAKKKLGQHVKYDRHVFANH-GIEVQGY-VHDTMLQSYVLEVHKPHGLAS 453

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E       +  P  + +     EY   D   T ++
Sbjct: 454 LAERH------------LGRKGINYEDLCGKGAKQIPFSQVSIDKAAEYSCEDSDQTLDV 501

Query: 172 FKRLEPLSSKE--------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
            + L P   K+                       I   G  +D       +  +     +
Sbjct: 502 HRTLWPRLEKDAQEGGKLRFIYELEIASSETLYRIERNGVLIDAPTLAQQSHELGQRILQ 561

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L+QE   L      +    +++    F + GL +   T     +T + VL       P  
Sbjct: 562 LEQEAYELAGQP-FNLGSPKQIGEIFFGKLGLPIVKKTATGAPSTDEEVLEKLADDYPLP 620

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            ++  +R   S+      + L +      GR+        A  TGR S      QN+P  
Sbjct: 621 AKILEHR-GLSKLKGTYTDKLAQMALPGTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIR 678

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              VR   IA  G  +  AD + IE R++A +
Sbjct: 679 TPEGRR-------------------------VREAFIAPPGCLIASADYSQIELRIMAHL 713

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+   L AF  G D++  T +  F V  + VT +QR   K +   L Y           
Sbjct: 714 SGDAALLLAFHDGMDVHRATASEVFGVPTSAVTSEQRRYAKTINFGLIYGMS-----SYG 768

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               L ++  A         + +   + +    + +       +   G          R 
Sbjct: 769 LAKSLGIDNTAAKNYIERYFDRFAGVKRYMDETRASAKAKGYVETVFGR---------RL 819

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
               ++                                            P+G      +
Sbjct: 820 YLPEINS-------------------------------------------PNGPRRGGAE 836

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                + +  T   L +      +                  ++A      +++ VHDE+
Sbjct: 837 RAAINAPMQGTAADLIKLSMNAVQRV----------------LDAEGRKTKMIMQVHDEL 880

Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           V E P+ +       +  LM         +PL AE      + K
Sbjct: 881 VFEVPENEVDWLKREVPKLMAGVAQ--LRVPLLAEVGVGVNWDK 922


>gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
 gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287]
          Length = 932

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 96/700 (13%), Positives = 201/700 (28%), Gaps = 161/700 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLK 58
            +  D ET S   L          +  ++  +F +  H         D      + +  +
Sbjct: 361 EVCFDTETTSVNAL----------EAELVGISFCWSAHKGYYVPFPTDKVEATKLLETFR 410

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN  +  V  N  ++  VL+   N+++       T++            +  + E  
Sbjct: 411 PFFENERIGKVGQNLKYDLKVLQNY-NIEVR-GALFDTMIAHYLLNPDMRHNMDILSETY 468

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              +      + LI                +           EY   D  VT ++    +
Sbjct: 469 --LNYTPIAIESLI----------GKGKAQRSMRTVPLDQVKEYAVEDADVTWQLKNVFK 516

Query: 177 PLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
               K             L  +   +   G  +DV       + +D +  +L+  +    
Sbjct: 517 EEMPKVNAEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIAEQA 576

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L   LF +  +      T+T    T + VL+           +     
Sbjct: 577 G-ESFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADIL-EWR 634

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           +  +     ++ L   +N       T      + TGR S      QN+P  +        
Sbjct: 635 QVQKLKSTYVDALPLEVNKLTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTPRG----- 689

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   IA      L+ AD + IE R++A ++ E   + 
Sbjct: 690 --------------------QQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMID 729

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           +F   ED++ +T A+ F+V   +VT++QR+  K +   +                G++  
Sbjct: 730 SFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGII--------------YGVSAF 775

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +                                     +  + +   +   +  +   
Sbjct: 776 GLSAQ------------------------------TNLSRSESKELIDTYYATYPNLRNY 805

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            ++  Q  ++                          +  +    GR     D+ +    +
Sbjct: 806 ISKQIQFAQE--------------------------HGYVETVLGRRRYLPDIHSRNQVV 839

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                +               +Q  + DI+   M+              ++L VHDE+V 
Sbjct: 840 RGAAERN---------AVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVF 890

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + P T+      ++   M S  + A  +PL A+      +
Sbjct: 891 DVPKTELNIVKPLIKEAMESAFNLA--VPLVADLGVGDNW 928


>gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 97/706 (13%), Positives = 189/706 (26%), Gaps = 169/706 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S                 ++  +F             HD            + 
Sbjct: 352 AVDTETTSLD----------YRLARIVGVSFALQAGEAFYIPIGHDYMGAPEQLDAQFVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALK 110
            +LK  LEN  +  +  +  ++  V        I +  W   T++ +           + 
Sbjct: 402 DILKPILENPAIGKIGQHMKYDAHVFNNH---GISLAGWAFDTMLASYVLNPTATRHGMD 458

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + +              L       E       +    ++        Y   D  +T  
Sbjct: 459 DLAQYY------------LNYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADITWR 506

Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++                   E     +   + + G  +D+     L Q    +   L+
Sbjct: 507 LYEHFSKELAKIPRLERLLLDAEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275
                L      +    ++L   LF + G+     T +    T + +L       P    
Sbjct: 567 SHAIELAGQP-FNVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEKI--DHPIIAT 623

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   S+      ++L+   +   +   T      + TGR S      QN+P     
Sbjct: 624 ILEYR-SLSKLKSTYTDSLIAQSDPATQRVHTSYHQAIAATGRLSSTDPNLQNIPIRGEV 682

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G+ ++ AD + IE R++A  + +
Sbjct: 683 GR-------------------------QIRQAFIAPKGRIILAADYSQIELRLMAHFSQD 717

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  LKAF  G D++  T A    +A   VT DQR   K +                    
Sbjct: 718 EALLKAFRDGRDIHQATAAEVMGIALEDVTSDQRRQAKAIN--------------FGLLY 763

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     +  ++ 
Sbjct: 764 GMS------------------------------AFGLAKQLNLSRAEAQEYITLYFSRYP 793

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +             +     +                         GR L   ++  
Sbjct: 794 SVHDYMENTR--ALAAEQGYVETVL------------------------GRRLYMENIRA 827

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDE 631
             + +        R             Q  + DI+   M++      K    ++L VHDE
Sbjct: 828 GNAMVRQA---AERAAINAPL------QGSAADIIKLAMISVDQSLPKEHAKMLLQVHDE 878

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKG--LPLKAEGYESKRYR 674
           +V E  +       ++L  LM +         +PL+ E      + 
Sbjct: 879 LVFEVDEDKADEVTALLKKLMPAVLQGRADIAVPLEIEVGRGVNWG 924


>gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
 gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4]
          Length = 901

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/698 (14%), Positives = 194/698 (27%), Gaps = 155/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S           Y E   ++  +F             HD            + 
Sbjct: 326 AFDLETNSLD---------YIE-AEIVGLSFAIKPKEAAYVPLAHDYDAAPLQLAREGVL 375

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L+  L++++   V  N  F+R VL     +++   R   +++ +           + +
Sbjct: 376 ARLQPLLQDSNRGKVGQNLKFDRNVLANY-GIELEGIR-HDSMLESYVLHSTASRHNMDS 433

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +              K L       E       +  P ++        Y   D  +  ++
Sbjct: 434 LAL------------KYLQRSTISYEEVAGKGAKQLPFNQVPIDKATRYAAEDADICLQL 481

Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
                P   +E+            L  +   +   G  +D       +  +     K++Q
Sbjct: 482 HHYFWPRLQQEEALCRLYQELEIPLIPVISRMERNGVQIDATQLKAHSAELTARLEKIEQ 541

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           E   L      +    ++++  L+ +  L +   T     +T + VL       P    +
Sbjct: 542 EAFELAG-EPFNLASPKQIQAILYDKLKLPITRKTPTGQPSTAETVLQELALDYPLPQLL 600

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   S+      + L   +N       T      + TGR S      QN+P  S   
Sbjct: 601 LEYR-ALSKLKSTYTDRLPLQVNPRTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRSAEG 659

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G  L+ AD + IE R++A ++ ++
Sbjct: 660 RR-------------------------IRQAFIAPPGYCLLAADYSQIELRIMAHLSDDE 694

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AFE GED++  T A  F      VT +QR   K +   L Y   A    +      
Sbjct: 695 GLLAAFEAGEDIHQRTAAEIFRTPLEGVTPEQRRSAKAINFGLIYGMSAHGLAQ-----Q 749

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L ++  A           +   + +   + +   +    +   G      +   RQ    
Sbjct: 750 LGISRSAAQHYIERYFHRYPGVKAYMDAICQQARQKGYVETLFGRRLYLPEIHSRQA--- 806

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
             +  N+  +        G A    KR  +      +                       
Sbjct: 807 --QRRNQAERMAINAPMQGTAADIIKRAMLRADQWLQK---------------------- 842

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                     Q  +                 +++ VHDE+V E 
Sbjct: 843 --------------------------QGSNA---------------RMIMQVHDELVFEV 861

Query: 637 PDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            + +     + +   M         +PL  E      +
Sbjct: 862 AEAELDTTTAAIRENMAGAAQ--IKVPLIVEMGSGANW 897


>gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
 gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444]
          Length = 945

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 100/711 (14%), Positives = 185/711 (26%), Gaps = 164/711 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
             + ID ET +   +             ++  +     +        H            
Sbjct: 358 RVVAIDTETSALDAMR----------ADLVGVSLALGPNDACYIPLGHGGSDMFAEKPLQ 407

Query: 52  ----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
                    LK  LE+  V  V  N  ++  +L       I +     T+V++       
Sbjct: 408 VDRAEALAALKPLLESDAVLKVGQNIKYDLNILARQ---GIMVSPIDDTMVMSFCLDAGR 464

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           +   +         ++ E   L+    K +       +              Y   D  V
Sbjct: 465 SETGLA---GHGMDELSERH-LLHTTMKFKELCGTGKKAISFAEVPLADATRYAAEDADV 520

Query: 168 TREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           T  + +  +P              ++ L  +   +   G  VD      L+     +  +
Sbjct: 521 TWRLHRLFQPRLAGEGGTRIYQKVDRPLIPVVAMMERNGIKVDRERLSGLSTEFAAQIAR 580

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKLTPQA 273
           L+  +         +    ++L   LF + G            +T Q VL        + 
Sbjct: 581 LEGVIHEKCGMS-FTIGSPKQLGEVLFDKLGYKGGKKGKTGQYSTDQSVLEGLAAQGAEV 639

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +     + S+      + L  A+N       T   L  ++TGR S      QN+P  +
Sbjct: 640 ATLVLEWRQLSKLKSTYTDALQAAINPHTGRVHTSYSLVGAQTGRLSSNEPNLQNIPIRT 699

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A  G  L+ AD + IE R+ A MA
Sbjct: 700 EIGR-------------------------QIRDAFVAEPGNVLLAADYSQIELRLAAHMA 734

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 +AF  GED++  T    F                          G       A 
Sbjct: 735 DVPALKEAFAAGEDIHARTAMEMFGTVDRDTR------------------GRAKTINFAI 776

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                             + +   + ++
Sbjct: 777 LYGIS------------------------------RWGLGGRLGVSADEAQAMIDRYFER 806

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              +    +E  ++  +                                  GR   +  +
Sbjct: 807 FPGIQRYIHETLESVRE--------------------------RGYSETLFGRKTWFPRI 840

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY---DIVL 626
            +        +    R            +Q  S DI+   M       T+AG     ++L
Sbjct: 841 SSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMARMMPALTEAGLGHVRMLL 891

Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWA--KGLPLKAEGYESKRYR 674
            VHDE+V E P  D   A  ++  +M +    A    +PL  E      + 
Sbjct: 892 QVHDELVFELPQGDVEAAKPVIERVMATAAEPAVKLSVPLGVEIGTGLSWG 942


>gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
 gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603]
          Length = 936

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 96/702 (13%), Positives = 193/702 (27%), Gaps = 162/702 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD----CVHDPVMPQVL 57
            ++  D ET              A    ++  +F               C     +    
Sbjct: 363 KSICFDTETTGTD----------ANQCELVGLSFSIKKGEAWYVPVPVNCDEIQPIVDEF 412

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   EN  +  +  N  F+  VLK  +N+ +       T++            +  + E 
Sbjct: 413 KPIFENPAIGKIGQNIKFDMLVLK-YYNVTMQ-GELFDTMLAHYIIDPDTRHNMDILAE- 469

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                        LI                            +Y   D  VT ++ +  
Sbjct: 470 -NYLGYSPVSITTLIG---------AKGKGQGTMRDVEIEKIKDYAAEDADVTLQLKEVF 519

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP   +          E  L Y+   I   G  +D       ++ ++ + +KL++ +   
Sbjct: 520 EPKLQQVGGTKLATDIENPLIYVLADIEFEGVRIDHDTLKEFSKDLETDISKLEKTVYEK 579

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    ++L   LF +  L  +   T+T    T + VL +    +     + + R
Sbjct: 580 AGVK-FNIASPKQLGEVLFEKLNLDAKAKKTKTGQYQTGEDVLLALANKSDIVRDILDFR 638

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L   +N   GR+  +     A+ TGR S      QN+P  +    E 
Sbjct: 639 Q-LQKLKSTYVDALPLMVNPKTGRVHTSYNQAVAA-TGRLSSNNPNLQNIPIRTERGRE- 695

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                                   VR   I   +   +V AD + IE R++A ++ +   
Sbjct: 696 ------------------------VRKAFIPRNDDHVIVSADYSQIELRIIAEISKDANM 731

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G D++  T A+ +     +V    R   K +                    G +
Sbjct: 732 MDAFIQGIDIHTATAAKVYGKTLDEVDGTMRRNAKAVN--------------FGIIYGQS 777

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             +            +   +  ++  + 
Sbjct: 778 ------------------------------AFGLSQNLNIPRKEAADIIDQYFAQYPGIK 807

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
              ++      +                          N  +    GR    RD+ +  +
Sbjct: 808 NYMSDTMNFARE--------------------------NGFVQTLMGRRRYLRDINSANA 841

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632
              T      R            +Q  + D++   M+N        K    + + VHDE+
Sbjct: 842 ---TVRGYAERNAINAP------IQGSAADMIKIAMINIHREFKKQKLDSRMTMQVHDEL 892

Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           V +   ++      +    M +       +P+  E      +
Sbjct: 893 VFDVHQSEIEIVKPIIMQNMQTAFK--TEVPIVVEIGTGANW 932


>gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205]
 gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205]
          Length = 923

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 96/701 (13%), Positives = 197/701 (28%), Gaps = 161/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQV---L 57
             L +D ET S   +          D  ++  +F   +          +     ++    
Sbjct: 351 NILSLDTETTSTTAI----------DAELVGLSFAVKEKEAFYVAIPANREEALKIVNIF 400

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   EN ++  V  N  ++  VL     ++I   +   T++            +  + E 
Sbjct: 401 KPLYENPEILKVGQNIKYDYEVLINY-GIEIQ-GKMFDTMLAHYLIQPELYHNMDYLAEV 458

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               + +    +ELI                K     A     EY   D  +T  +   L
Sbjct: 459 --FLNYQTIHIEELIG---------PKGKNQKSMRDLAPSDIYEYAAEDADITLRLKNVL 507

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E    +          E  L  +   +   G C+D       ++ +     +++  +  L
Sbjct: 508 ESKLKEIDCEDLFWNVEMPLVPVLAHMEMTGVCIDTDTLKETSENLTNRLNEIEHHIYEL 567

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +     ++   LF +  +      T+T    T + VL   +  +P   ++ N R
Sbjct: 568 AG-ESFNIASPRQVGEILFGKMKIVEKPKKTKTGQYVTSEEVLQQLRSKSPIIDEILNYR 626

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +NS  G +  +      + TGR S      QN+P      +E 
Sbjct: 627 -GLKKLLGTYIDALPKLINSRTGHIHASFNQAI-TATGRLSSSDPNLQNIPVRDDDGKE- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R C I   G     AD + IE R++A ++ +   +
Sbjct: 684 ------------------------IRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPNMV 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T A+ ++    +VT  QR   K                      G+  
Sbjct: 720 EAFREGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANF--------------GIIYGITT 765

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +   +                                 +++ + + +    V  
Sbjct: 766 FGLAQRMNIEN------------------------------REAKQIIEDYFRTFPGVQA 795

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
              +  +   +                                   R     D+ +    
Sbjct: 796 YMEKAKEMARE--------------------------KGYAETLFHRRRYLPDINSKN-- 827

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
             T      R            +Q    DI+   M+              +++ VHDE+ 
Sbjct: 828 -GTVRGFAERNAINAP------IQGSEADIIKVAMIRIFNRFRAEGIRSKMIIQVHDELN 880

Query: 634 CETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++     +    M +   +   +PL A+      +
Sbjct: 881 FSVYPEEKEKVEKIVVEEMQNA--YQLSVPLVADAGWGNNW 919


>gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
 gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
          Length = 917

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/702 (15%), Positives = 202/702 (28%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F  +          H             + 
Sbjct: 343 AFDTETTALDPMI----------ARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDEVL 392

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ D   V  +  ++  VL     +++       TL+ +              
Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A      Y   D  +T ++ + 
Sbjct: 451 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQA 500

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D AL    +  +     +L+ +  
Sbjct: 501 LYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAY 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N   GR+        A  TGR +      QN+P  +     
Sbjct: 620 R-GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 677

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G ++V AD + IE R++A ++G+   
Sbjct: 678 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 712

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F V P +V  DQR I KV+                    G++
Sbjct: 713 LRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS 758

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A        A +     +  ++  V+
Sbjct: 759 ------------------------------AFGLASNLGITRDAAKLYIDRYFTRYPGVA 788

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +   A +                              +    GR L   ++     
Sbjct: 789 QYMEDTRTAAKD--------------------------KGYVETVFGRRLWLPEINGGNG 822

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                     R            +Q  + D++   M+         +    +++ VHDE+
Sbjct: 823 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDEL 873

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E PD +       L  +M         +PL AE      +
Sbjct: 874 VLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
 gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1]
          Length = 896

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 119/708 (16%), Positives = 219/708 (30%), Gaps = 167/708 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVM 53
             + ID ET S              +  ++  +    D         H+          +
Sbjct: 322 DVISIDLETSSLDP----------HEAKIVGISVAIKDGEGFYIPVNHESSDWQADEKQV 371

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALK 110
              LKE LE++   IV  N  F+  +L+    ++ P+     T++ A      S    L 
Sbjct: 372 LLRLKELLEDSGTKIVGQNLKFDYEILEKH-GIE-PVVPHFDTMIAAYLLNPDSRRFNLD 429

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +   LK    +     EL+                    + +     +Y   D  +   
Sbjct: 430 DLA--LKFLGYRTTSFSELMN----------KNQLKDQFEKVSVEEAAKYSVEDADIALR 477

Query: 171 IFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +++ L                E EL  +   +   G  ++V     L++  +    K+ +
Sbjct: 478 LYRVLSKKLYESDLDNIFHKIEMELIPVLAELELNGVYMNVESLKNLSEEYEKRLGKIRE 537

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           EL  L      +     ++   LF + GL+    T+    +T   VL       P   ++
Sbjct: 538 ELFELAG-EPFNPNSPTQVSKILFEKLGLNPPKKTKHGAYSTSAAVLEELVNEHPIIQKL 596

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
            + R +  +     L+TL   +N   GR+  +    G + TGR S      QNLP     
Sbjct: 597 LDYR-KYQKLKSTYLDTLPTLVNPVTGRIHASYHQTG-TGTGRLSSSNPNMQNLPIKGEE 654

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAG 394
            +E                         +R CV+  +   K++ AD + IE RVLA  + 
Sbjct: 655 GKE-------------------------IRKCVVPQKSDWKIISADYSQIELRVLAHFSE 689

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF+ GED++  T +R + V+   VT + R +GK++  ++ Y             
Sbjct: 690 DERLISAFKNGEDVHALTASRLYGVSVKDVTPEMRQVGKMVNFSIIY-----GISPYGLA 744

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L + T                                          E +   +   +
Sbjct: 745 RRLKIKTHI---------------------------------------AENMISNYFNAY 765

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +  NE+    ++                             +    GR        
Sbjct: 766 PGVRKFINEVIHEAKE--------------------------KGYVRTLFGRKREIPHFR 799

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
                      +  R            +Q  + DI+   M+   K           +L V
Sbjct: 800 TRNKMKIQ---EGERIAINTP------IQGTAADIMKLAMIKIHKMVKEEGLEAFPILQV 850

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           HDE+V E P T+      +L   M+        +PL+ +   +  + K
Sbjct: 851 HDELVFEAPATEVDRVCDILTRGMSGVVE--LKVPLEVDVAVNSYWGK 896


>gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
 gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A]
          Length = 945

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 101/701 (14%), Positives = 199/701 (28%), Gaps = 161/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57
             L +D ET S   +             ++  +F  + +         D      M  + 
Sbjct: 373 DILSLDTETTSTNTM----------QAELVGLSFSIEPNKAFYIAIPSDRDKAQKMVNIF 422

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           K   E   +  +  N  ++  VL     ++I   +   T++            +  + E 
Sbjct: 423 KPLYEEDKILKIGQNIKYDYEVLAQY-GINIK-GKMFDTMIAHYLIQPELHHNMDYMAET 480

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L   + K     ELI    K +       RN            EY   D  +T +++  L
Sbjct: 481 L--LNYKTIHIDELIGAKGKEQ----KNMRNLSPTSI-----YEYACEDADITLQLYNVL 529

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P              E  L  +   +   G C+D       + I        + ++   
Sbjct: 530 LPKLKDVNAEKLFWDIEMPLVRVLANMEMNGVCLDTDALQETSNIFTKRMQTYEAQIYEQ 589

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+     T + VL S +  +P    + N R
Sbjct: 590 AG-EKFNISSPKQVGDILFGKMQIMEKPKKTKKGQYVTNEEVLQSLEASSPIVRNILNYR 648

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P  +   +E 
Sbjct: 649 -GIKKLLGTYVDALPKLINKRTGRIHTSFNQA-LTATGRLSSSDPNLQNIPVRTDDGKE- 705

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R C I         AD + IE R++A ++ ++  +
Sbjct: 706 ------------------------IRKCFIPEPECVFFSADYSQIELRIMAHLSKDENMI 741

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF +G D++  T A+ +++    VT  QR   K                      G+  
Sbjct: 742 EAFRSGYDIHRATAAKIWHIPMEDVTDTQRKKAKQANF--------------GIIYGITT 787

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A                                        +++ + +     +V +
Sbjct: 788 YGLAQR------------------------------MGIPNNEAKKLIEDYFNTFPKVHD 817

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +   +                                  GR     D+ +  S 
Sbjct: 818 FMESAKELARK--------------------------KGYAETIFGRRRYLNDINSKNS- 850

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
             T      R            +Q    DI+   M+   +          ++L VHDE+ 
Sbjct: 851 --TVRGFAERNAINAP------IQGTEADIIKVAMIRIYERFCRENIRSKMILQVHDELN 902

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++     +    M +  +    +PL A+    K +
Sbjct: 903 FSVFPDEKERVEHIVLEEMQAACT--LSVPLIADAGWGKNW 941


>gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
 gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM
           30120]
          Length = 934

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/695 (15%), Positives = 207/695 (29%), Gaps = 147/695 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S             ++  ++  +F  +          HD            + 
Sbjct: 357 AFDTETDSLD----------TQEARLVGMSFAIEAGRAAYLPVGHDYLDAPAQLSLDEVI 406

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            V+K  LEN  +  +  N  ++  VL    ++++       T++ +      + +     
Sbjct: 407 AVMKPILENEKIGKIGQNLKYDAEVLLNY-DIELKGIA-FDTMLESYVLNSVAGMG---- 460

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + +   L  +    E       +    ++        Y   D  VT  + + 
Sbjct: 461 --RHDMDSLADRH-LNHKTVSFEEIAGKGKKQLTFNQIPLEQAANYAAEDADVTLLLHQA 517

Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   +  +G  +D A+    +Q++     +L+++  
Sbjct: 518 LYPQLESEPKLAHVFQNIEMPLVPVLVRMERKGVLIDAAVLTAQSQVITARLAELEKQAF 577

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L+T LF +  L +   T +    T + VL            +  +
Sbjct: 578 DLAG-EEFNLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNHALPKLLLEH 636

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N   +   T      + TGR S      QN+P  +      
Sbjct: 637 R-SLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGRR- 694

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A +G K++ AD + IE R++A ++ ++  L
Sbjct: 695 ------------------------IRQAFVARDGYKVMAADYSQIELRIMAHLSQDKGLL 730

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F V   +VT DQR   K +   L Y   A           L +
Sbjct: 731 TAFAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIYGMSA-----FGLARQLGI 785

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    +   E +     +    +    E    +   G          +  +  +  
Sbjct: 786 PRGEAQRYMDLYFERYPGVLRYMENTRLQASERGYVETLEGR--RLYLADIKSSN-GMRR 842

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A    K+  + +       N L    PS               
Sbjct: 843 --KAAEREAINAPMQGTAADIIKKAMIAVD------NWLETEKPS--------------- 879

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                                       D+L               + VHDE+V E  ++
Sbjct: 880 ---------------------------ADML---------------MQVHDELVFEVKES 897

Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +     + +  LM  + +    +PLK E      +
Sbjct: 898 ELEKVQAKVQELMEQSMT--LDVPLKVEVGVGSNW 930


>gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383]
 gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383]
          Length = 917

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/703 (16%), Positives = 201/703 (28%), Gaps = 166/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 343 AFDTETTSLDPML----------ARLVGLSFSVESGKAAYLPVAHRGPDMPEQLPLDEVL 392

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
             LK  LE+ D   V  +  ++  VL      DI ++     TL+ +             
Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESYVVESHRTHDMDS 449

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+    K            K E       +       A     EY   D  +T ++  
Sbjct: 450 LALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALTQAAEYAAEDADITLQLHH 499

Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  +  + + +   G  +D       +  +     +L+ + 
Sbjct: 500 ALYPQVAREPGLLHVYREIEMPVSLVLRKMERTGVLIDDVRLQAQSTEIATRLIELEAQA 559

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    +++    F +  L +   T +    T + VL    +  P    +  
Sbjct: 560 YELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 618

Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L   +N   GR+        A  TGR +      QN+P  +    
Sbjct: 619 HR-GLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGR 676

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IAS G ++V AD + IE R++A ++G+  
Sbjct: 677 R-------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDAS 711

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L+AF  GED++  T A  F V P +V  DQR I KV+                    G+
Sbjct: 712 LLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGM 757

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A        A +     +  ++  V
Sbjct: 758 S------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGV 787

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           ++   +     ++                             +    GR L   ++    
Sbjct: 788 AQYMEDTRSVAKE--------------------------KGYVETVFGRRLWLPEINGGN 821

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
                      R            +Q  + D++   M+         K    +++ VHDE
Sbjct: 822 GPRRQA---AERAAINAP------MQGTAADLIKLSMIAVDDWLTRDKLASRMIMQVHDE 872

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E PD +       L  +M         +PL AE      +
Sbjct: 873 LVLEVPDGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1]
 gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1]
          Length = 920

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 102/699 (14%), Positives = 187/699 (26%), Gaps = 151/699 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
               +D ET S   +          D  ++  +F             H            
Sbjct: 342 DVFSVDTETTSLNYM----------DAELVGISFSLQAGEAAYVPVGHTAIGTPEQLPLD 391

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            +   LK  LE      +  N  ++  VL     + +   R   T++ +           
Sbjct: 392 YVLNALKPILEAETPAKIGQNLKYDMNVLARY-GITLSGVR-FDTMLESYVLD------- 442

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              A +     +   K L  +    E       +     +        Y   D  VT ++
Sbjct: 443 -AAATRHDMDSLAL-KYLGQKTIAFEDVAGKGAKQITFDQVPLLQAATYAAEDADVTLKL 500

Query: 172 FKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   +   G  +DVA     ++ +     +L+ 
Sbjct: 501 HQALWPRVQKTPTLTKVFQEIEMPLVGVLSRMEREGARIDVAALKQQSRQLGERMAELEA 560

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           E  +L      +    ++L   L+ +  L           +T + VL            +
Sbjct: 561 EAHTLAGQP-FNLASPKQLGEILYDQLQLPILKKTPKGAPSTDESVLQDLAHDYELPKVL 619

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L E +N   GR+  +     A  TGR S      QN+P  + S
Sbjct: 620 LEYR-GCAKLKSTYTDKLPELVNPRTGRIHTSYHQAVA-STGRLSSSDPNLQNIPIRNES 677

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             +                         +R   IA  G  +V AD + IE R++A ++ +
Sbjct: 678 GRK-------------------------IRQAFIAEPGFTMVAADYSQIELRIMAHLSDD 712

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF  G D++  T A    V    VT D R   K +   L Y   A          
Sbjct: 713 ESLIDAFARGLDIHRATAAEVMGVPLEDVTSDMRRSAKAVNFGLIYGMSA-----FGLAR 767

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L ++        +     +     +   +++   +    +   G          R    
Sbjct: 768 QLGISREQAQAYMDRYFHRYPGVLRYMEDIRKQAHDQGYVETLFGR--RLYLPEVRAASK 825

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
              +      +        G A    KR  + +    + +                    
Sbjct: 826 MRRQ---AAERVAINAPMQGSAADIIKRAMIDIDTWLRTQPA------------------ 864

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                                 M+          + VHDE+V E
Sbjct: 865 -----------------------------------KIRMI----------MQVHDELVFE 879

Query: 636 TPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+         +   M+   S    +PL  E      +
Sbjct: 880 VPNDVVPDAIEQIQKRMSGAAS--LKVPLIVEAGTGTNW 916


>gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1]
 gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1]
          Length = 937

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 102/705 (14%), Positives = 199/705 (28%), Gaps = 167/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S  ++             ++  +F             H+            + 
Sbjct: 364 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDLDKVL 413

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV 112
             L+  LE+     +  +  +++ V      + +  +    T++ +       P  L ++
Sbjct: 414 ARLRPWLEDASRKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 471

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                           +       E          P  +        Y   D   T ++ 
Sbjct: 472 ALRH------------VNRSGISYEDLCGKGKSQIPFAQVPVDKAAAYSCEDSDQTLDVH 519

Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             L P                +       I   G  +D       +  +     KL++E 
Sbjct: 520 NTLWPRIQVHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLEEEA 579

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L    F + G+ +   T     +T + VL    +  P   ++  
Sbjct: 580 YEIAGQP-FNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 638

Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L +     DGR+        A  TGR S      QN+P  +    
Sbjct: 639 HR-SLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVA-VTGRLSSNDPNLQNIPVRTPEGR 696

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   +A EGK +  AD + IE R++A ++G++ 
Sbjct: 697 R-------------------------VREAFVAPEGKLIASADYSQIELRIMAHLSGDEA 731

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF+ G D++  T A  F V+  +V+ +QR   KV+                    G+
Sbjct: 732 LLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVIN--------------FGLIYGM 777

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A        A       + Q++  V
Sbjct: 778 SSFGL------------------------------AKNLGIETKAAAAYIDKYFQRYPGV 807

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
               ++  +                                 +    GR LV  ++    
Sbjct: 808 KRYMDQTVELAH--------------------------AQGYVETVFGRRLVLPEINGGN 841

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
                  +   R            +Q  + D++ + M+         K    +++ VHDE
Sbjct: 842 GPRK---KAAERAAINAP------MQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDE 892

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +V E P+       + +  +M         +PL AE      + K
Sbjct: 893 LVFELPEAARDWVQAEIPAIMAGVAD--LSVPLLAEIGFGSSWEK 935


>gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
 gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1]
          Length = 927

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/702 (16%), Positives = 214/702 (30%), Gaps = 155/702 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + +D ET S  +L             ++  +F  +          H            
Sbjct: 351 DLVALDTETNSLDELR----------AQIVGLSFSVEPGAAAYIPLAHSGPEAPEQLPLD 400

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109
            + + LK  LE+     +  +  ++R V      +D+  +    T++ +    +  P  L
Sbjct: 401 TVLERLKPWLEDASRPKLGQHVKYDRHVFANH-GIDVRGYA-HDTMLQSYVLEVHRPHNL 458

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++ E           G+  I+     E       +  P  +        Y   D   T 
Sbjct: 459 ASLAERH--------TGRTGISY----EDLCGKGAKQIPFAQVPVEQAAAYSCEDSDQTL 506

Query: 170 EIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           ++ + L PL   +           E   +   I   G  +D A     +  +     +L+
Sbjct: 507 DVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDTATLQQQSHDLGQRILRLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           QE   +      +    ++L    F + GL +   T     +T + VL    +  P   +
Sbjct: 567 QEAYDIAGQP-FNLGSPKQLGEIFFDKLGLPVVKKTATGARSTDEEVLEKLAEDYPLPAK 625

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   S+      + L +  +   GR+        A  TGR S      QN+P  + 
Sbjct: 626 ILEHR-SLSKLKGTYTDKLGQLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIPIRTA 683

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR   +A  G+ +  AD + IE R++A ++G
Sbjct: 684 EGRR-------------------------VREAFVAPPGRVIASADYSQIELRIMAHLSG 718

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L+AF  G D++  T A  F VA  QV+ +QR   KV+   L Y             
Sbjct: 719 DDALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMS-----SFGLA 773

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++  A     +   + +   + +    + +       +   G          R   
Sbjct: 774 RNLGIDNKAAAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGR---------RLYL 824

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             ++                                            P+G      +  
Sbjct: 825 PEINS-------------------------------------------PNGPRRGAAERA 841

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
              + +  T   L ++           VQ          +++A K    +++ VHDE+V 
Sbjct: 842 AINAPMQGTAADLIKKAMVA-------VQ---------AVLDADKPQVLMIMQVHDELVF 885

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P+ +       +  LM         +PL AE      + K
Sbjct: 886 ELPEEESGWLRTEVPRLMAGVAE--LKVPLLAEVGMGPNWEK 925


>gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47]
          Length = 975

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/704 (15%), Positives = 205/704 (29%), Gaps = 160/704 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--------VMP 54
            L ID ET S           +A    ++  +  +                      ++ 
Sbjct: 396 VLAIDTETTST----------HARGCDLVGISIAWQPGEAAYIPVRAPDGDPAINELIVI 445

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           + L++ LE++ +  V HN  F+  VL     + +       T+V             L  
Sbjct: 446 ETLRDVLESSAIEKVGHNLKFDVIVL-RSAGVQLGGITM-DTMVADYLLNSGGRNHGLDD 503

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +            K+LI              +     +        Y   DV V   +
Sbjct: 504 LAQR--RLDHTNLSIKDLI----------GTGKKQITMDQVPVDDVSPYACEDVDVPIRL 551

Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              L                E  L  +   +   G  V+      +++  D +   L   
Sbjct: 552 APTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRAL 611

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           + S       +    ++L   LF E GL +   T+   +T   VLS        A  V  
Sbjct: 612 VFSAAGH-EFNLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVLQ 670

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            R  A++     ++ L + +    GR+  + +   A+ TGR S      QN+P  +   +
Sbjct: 671 YRQ-ATKLKNTYIDALPQLICDKTGRVHTSFRQDVAA-TGRLSSSEPNLQNIPIRTEQGK 728

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396
                                     +R+   A  EG  L+ AD + IE RVLA  +G++
Sbjct: 729 A-------------------------IRAAFTAGREGWSLLGADYSQIELRVLAHYSGDE 763

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + A+    D++    A    +  ++VT D R I K +   + Y               
Sbjct: 764 ALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSP-----FGLAKT 818

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L ++            + +   E F                 +G          R++   
Sbjct: 819 LGISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGR---------RREIKG 869

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +L                                         LP  +     +    
Sbjct: 870 VRDL---------------------------------------AKLPESKRRSLTEP--- 887

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
                       R            +Q  + D++   M+   +          ++L +HD
Sbjct: 888 -----------ERIAINMP------IQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHD 930

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E++ E+PD +      M+   MTS       +PLK +    + +
Sbjct: 931 ELLLESPDEELDALSDMIREAMTSVME--LDVPLKVDVAHGRTW 972


>gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1]
 gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1]
          Length = 922

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/698 (15%), Positives = 196/698 (28%), Gaps = 152/698 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + +D ET S   +             ++  +F  +          HD             
Sbjct: 345 IAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAV 112
            + L+  LE+  V  V  N  ++ +VL     + +       T++ +      ++     
Sbjct: 395 LEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQ-GVVFDTMLESYVFNSVASRHDMD 452

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           G ALK    K              E       +    ++    +   Y   D  +T  + 
Sbjct: 453 GLALKYLGHKNI----------GFEDIAGKGAKQLTFNQIPLEVAAPYAAEDADITLRLH 502

Query: 173 KRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P               E  L  +   I  +G  +D  L    +  +  +   L+++
Sbjct: 503 QHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 562

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L+   F + G  +   T     +T + VL       P    + 
Sbjct: 563 AYEIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVIL 621

Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            +R   S+      + L   +N   GR+  +     A+ TGR S      QN+P  +   
Sbjct: 622 EHR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEG 679

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G+K++ AD + IE R++A ++ + 
Sbjct: 680 RR-------------------------IRQAFIAPAGRKILAADYSQIELRIMAHLSQDA 714

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF  G+D++  T A  F      VT +QR   K +   L Y   A           
Sbjct: 715 GLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSA-----FGLARQ 769

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L++         ++    +     +    +    E        G      +   R    R
Sbjct: 770 LDIPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRR 829

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +A       G A    K+  + +    K +    +                
Sbjct: 830 -----QGAERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEI---------------- 868

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                                M+          + VHDE+V E 
Sbjct: 869 ------------------------------------AMI----------MQVHDELVFEV 882

Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                      +  LM         + L AE      +
Sbjct: 883 DADKAETLKQKVCELMAKAA--ILDVALLAEAGIGDNW 918


>gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200]
          Length = 922

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/698 (15%), Positives = 196/698 (28%), Gaps = 152/698 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + +D ET S   +             ++  +F  +          HD             
Sbjct: 345 IAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAV 112
            + L+  LE+  V  V  N  ++ +VL     + +       T++ +      ++     
Sbjct: 395 LEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQ-GVVFDTMLESYVFNSVASRHDMD 452

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           G ALK    K              E       +    ++    +   Y   D  +T  + 
Sbjct: 453 GLALKYLGHKNI----------GFEDIAGKGAKQLTFNQIPLEVAAPYAAEDADITLRLH 502

Query: 173 KRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P               E  L  +   I  +G  +D  L    +  +  +   L+++
Sbjct: 503 QHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 562

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L+   F + G  +   T     +T + VL       P    + 
Sbjct: 563 AYEIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVIL 621

Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            +R   S+      + L   +N   GR+  +     A+ TGR S      QN+P  +   
Sbjct: 622 EHR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEG 679

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G+K++ AD + IE R++A ++ + 
Sbjct: 680 RR-------------------------IRQAFIAPAGRKILAADYSQIELRIMAHLSQDA 714

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF  G+D++  T A  F      VT +QR   K +   L Y   A           
Sbjct: 715 GLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSA-----FGLARQ 769

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L++         ++    +     +    +    E        G      +   R    R
Sbjct: 770 LDIPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRR 829

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +A       G A    K+  + +    K +    +                
Sbjct: 830 -----QGAERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEI---------------- 868

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                                M+          + VHDE+V E 
Sbjct: 869 ------------------------------------AMI----------MQVHDELVFEV 882

Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                      +  LM         + L AE      +
Sbjct: 883 DADKAETLKQKVCELMAKAA--ILDVALLAEAGIGDNW 918


>gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
 gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335]
          Length = 920

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/699 (15%), Positives = 210/699 (30%), Gaps = 147/699 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHD-------PVMPQVL 57
           D ET S   L          +  ++     + + P         H          +   L
Sbjct: 335 DTETNSIDPL----------EADLVGIGCCWGEGPTALAYIPVGHTAGEQLSMETVLSAL 384

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K  LE+     V  N+ ++R VL+    + +        ++ +      ++      AL+
Sbjct: 385 KPILEDQQYPKVFQNAKYDRLVLRRA-GVSL-TGVVFDPMLASYVLNPENSHNLSDLALR 442

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                     +L+              + K     A     +YC  DV  T  +   L+ 
Sbjct: 443 YLELTTVSYTDLVP-------------KGKTIGEVAIAEVAQYCGSDVHTTYRLVPLLKA 489

Query: 178 LS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  +  +   +   G  +D A  +  ++ ++ +   +++      
Sbjct: 490 DLQEVPDLATLYTEVELPVEPVLAKMEATGIRIDKAYLNQFSKQLESDLAGIEKAAYDAA 549

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L    F + GL      +     +T    L   +   P    V   R 
Sbjct: 550 G-EEFNLGSPKQLSELFFEKLGLDKRKSRKNKTGYSTDAATLEKLQGDHPVVDSVVEYR- 607

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             S+     ++ L   +  + GR+         + TGR S      QN+P  +       
Sbjct: 608 TLSKLKSTYVDALPALIRPNTGRVHTDFNQAITT-TGRLSSSNPNLQNIPTRTA------ 660

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                               S  +R   +  EG +LV AD + IE R+LA ++ E   +K
Sbjct: 661 -------------------FSRQIRQAFLPKEGWQLVAADYSQIELRILAHLSEEPILIK 701

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            +   ED++  T    F+    ++T ++R + KV+   + Y  GA  F        ++++
Sbjct: 702 TYREDEDVHRLTATLLFDKDKDEITVEERRMAKVINFGVIYGMGAARF-----AREMDIH 756

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +   + + +   + + MQ     +       G       + +          
Sbjct: 757 RLDAKTFIDRFNQRYPNVFEYLQQMQREAIAYGYVKTIAGR------RRYFN-------- 802

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                       +   K  +   + L S R              
Sbjct: 803 -----------------------FTTRSLQALKGTDPTKIDLSSLR-------------T 826

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCET 636
           N     L R            +Q  S DI+   M+   +       +++L VHDE++ E 
Sbjct: 827 NGYDAGLLRAAANAP------IQGSSADIIKVAMIRLHELLKGYQANMLLQVHDELIFEV 880

Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           P  +       +   M    S A  +PLK E    K + 
Sbjct: 881 PPDEWEELQPKIEQTMEDAVSLA--VPLKVEAQAGKNWM 917


>gi|332969120|gb|EGK08156.1| DNA-directed DNA polymerase I [Psychrobacter sp. 1501(2011)]
          Length = 1018

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 99/744 (13%), Positives = 203/744 (27%), Gaps = 203/744 (27%)

Query: 2    ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------ 49
                +D ET S              +  ++  +F    H        H            
Sbjct: 402  KHFAVDTETTS----------IDWREAEIVGLSFSVQAHEAYYVPLAHVDYSEPQKKAKN 451

Query: 50   -------------------------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
                                       ++   LK  LEN ++  +  +  ++  VL+   
Sbjct: 452  KKEEAEQAELVANAEVDPLIAKQLDRDMVLTKLKPILENPEIGKIGQHLKYDAHVLRKY- 510

Query: 85   NLDIP--IHRWI-CTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
             +++      W   T++ +          ++  +      +                 E 
Sbjct: 511  GIELNTSPKNWEMDTMLASYVLNAAATRHSMDDLARHYLHTQ------------TISFED 558

Query: 139  HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ-----------ELWY 187
                  +     + A  +  +Y   D  +T ++F+  +     +             +  
Sbjct: 559  VAGKGAKQVTFDKVAINIASDYACEDADITYQLFELFQDRLKDDTVNQRLLHELEIPVAQ 618

Query: 188  LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
            +   +   G  +  +  + L++  D E  +L+++          +    ++L   LF + 
Sbjct: 619  ILCQMESEGIMIKRSFLNELSERFDEEIIELEKQAYVEAG-EEFNLGSPKQLGEVLFDKL 677

Query: 248  GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
            G+     T++    T + VLS      P A      R   ++      + L    + D  
Sbjct: 678  GVIGGKKTKSGQYSTGEAVLSKI--DHPLAEIALEYR-SLAKLKNTYTDALDAVADKDTD 734

Query: 304  LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
               T      + TGR S      QN+P  +++                            
Sbjct: 735  RVHTSYHQALTSTGRLSSTDPNLQNIPIRTKTGR-------------------------L 769

Query: 364  VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            +R   IA EG+ L+ AD + IE R++A  +G+    KAF  G D++  T A     +  +
Sbjct: 770  IRQAFIAPEGRVLLAADYSQIELRLMAHFSGDANLTKAFNEGLDIHTATAAEVLGKSVDE 829

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            VT  +R   K +                    G++    A  ++                
Sbjct: 830  VTPTERRNAKAINF--------------GLLYGMSAFGLAKQLQM--------------- 860

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                +     + +++  V     +                    
Sbjct: 861  ---------------SRGEAQDYIDQYFKRYPGVRRYMQDTRDNAVD------------- 892

Query: 544  RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                            +    GR L   D+ +N   +    R   R             Q
Sbjct: 893  -------------KGYIETILGRKLYTPDINSNNQMVR---RGAERAAINAPL------Q 930

Query: 604  AVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN---- 654
              + D++   M+   K        ++L VHDE+V E           ++ + M +     
Sbjct: 931  GSAADLIKLAMIAVDKVLPKQNAKMLLQVHDELVFEVDSDKADEIGELIKNAMQNVLSDT 990

Query: 655  ---PSWAKG--LPLKAEGYESKRY 673
                 W     +PL  E      +
Sbjct: 991  AKDMGWDVDFAVPLLVETGVGDNW 1014


>gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
 gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60]
          Length = 948

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 99/718 (13%), Positives = 195/718 (27%), Gaps = 177/718 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------ 49
               ID ET               +   ++  +F    H        H            
Sbjct: 358 KHFVIDTETTDVN----------WQHAELVGLSFALQSHEAYYVPVAHVDEMGNRIEQLT 407

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP-IHRWI-CTLVLARSNGL-- 105
              +   LK  L+N  +  +  +  ++  +L       I     W   T++ +       
Sbjct: 408 REDVLAQLKPILQNPQIGKIGQHLKYDAHILANYHINLINEPSNWAMDTMLASYVINAVA 467

Query: 106 -PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
               +  +      +                 E       +     +    +  +Y   D
Sbjct: 468 TRHGMDDLARHYLHTQ------------TITFEDVAGKGAKQITFDKVPLTVASDYACED 515

Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
             +T ++F+                   E  +  +   +   G  ++ A    L+   D 
Sbjct: 516 ADITYQLFELFSEKLKAEPNNAKLLHELEIPVAQILCQMEHDGILLNKAFLGELSARFDE 575

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKL 269
           +   L+    +       +    ++L   LF   G+     T+    +T + VL++    
Sbjct: 576 KIQALETVAFAQAG-ETFNLASPKQLGEVLFDRLGITGGKKTKTGQYSTSEAVLATI--D 632

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P    V  +R   S+      + L    +S+ R+  +      + TGR S      QN+
Sbjct: 633 HPLIETVLEHR-SLSKLKSTYTDALANVADSNDRVHTSYHQALTT-TGRLSSTEPNLQNI 690

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  + +                            +R   IA +G+K++ AD + IE R++
Sbjct: 691 PIRTDTGR-------------------------LIRGAFIAPKGRKVLSADYSQIELRLM 725

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A  A +   ++AF+ G D++  T A     A   VT ++R   K +              
Sbjct: 726 AHFANDPVLIRAFQEGHDIHRATAAEILGKAFDDVTSEERRQAKAVN------------- 772

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                 G++    A                                  F     +   K 
Sbjct: 773 -FGLLYGMSEFGLAKQ------------------------------LGFTRQQAQDYIKL 801

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           +  ++  V         A +                              +    GR L 
Sbjct: 802 YFARYPTVRAYMQATRTAAQN--------------------------QGYITTILGRKLF 835

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIV 625
             D+ +    +        R             Q  + DI+   M+   +        ++
Sbjct: 836 TPDMQHPNRGVRQA---AERAAINAPL------QGSAADIIKLAMIAVNEVLPTEHAKML 886

Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673
           L VHDE+V E  +      +  + + M    S       W     +PL  E      +
Sbjct: 887 LQVHDELVFEADEDKAEAIAELIKNAMQEVLSKTAKDKGWDVDFAVPLVVEVGIGDNW 944


>gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640]
 gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06]
          Length = 932

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/705 (15%), Positives = 205/705 (29%), Gaps = 164/705 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
            + ID ET S            A +   +  +  F           H             
Sbjct: 354 KIGIDTETTSLD----------AMNAAPVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQY 403

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110
           +   LK  LEN  +  +  N  +++ V   C  + +        ++ +          L 
Sbjct: 404 VLDRLKPHLENPALKKIGQNLKYDQHVFANC-GIALNGI-VGDAMLASYIIESHLGHGLD 461

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +             G+ L       E+      +       A     EY   D      
Sbjct: 462 ELS------------GRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALR 509

Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +   L               E  +  +   +   G  +D A     +  +  E  KL+QE
Sbjct: 510 LEAHLRAQMDDKQLEMYEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQE 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQ 275
             +       +    ++L+  LF + G+  + L +      +T + VL       P    
Sbjct: 570 AYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKI 628

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  NR   ++      + L E ++   +   T      + TGR +G     QN+P  +  
Sbjct: 629 ILKNR-SLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRLAGNNPNLQNIPIRTEE 687

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             +                         VR    A  G  +V AD + IE R++A ++G+
Sbjct: 688 GRK-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSGD 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+ GED++  T A  F +AP  V+ +QR   K +                    
Sbjct: 723 KTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGLIY 768

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     A  +  ++                                 +     +  ++ 
Sbjct: 769 GMGQYGLAKSLGIDNLS------------------------------AKNFIDRYFARYP 798

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V+E      +                                 +    GR L   D+ +
Sbjct: 799 GVAEYMQRARECA--------------------------AGQGYVETLFGRRLYLSDIRH 832

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVH 629
             +       +  R            +Q  + D++   M++ ++          +++ VH
Sbjct: 833 TNA---NIRARAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVH 883

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P+ +       L  +M +       +PL AE      +
Sbjct: 884 DELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAEVGAGMNW 928


>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
 gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
          Length = 905

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/703 (15%), Positives = 196/703 (27%), Gaps = 166/703 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VM 53
           + +D ET S   +             ++  +   +          H             +
Sbjct: 332 VALDTETTSLDQM----------QARLVGLSLAVEPGVACYIPVAHRGPDGATQLPKAEV 381

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111
              LK  LE+     + H++ ++  V      + +       T++ A          L  
Sbjct: 382 LARLKPWLEDASRAKLLHHAKYDAHVFAN-EGIALAGIT-DDTMLQAYVLESHRGVGLND 439

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L       E       +       A    G Y   D   T ++
Sbjct: 440 LAQRY------------LGRSGISYEDLCGKGAKQIGFDEVAVDKAGHYAAEDADFTLQL 487

Query: 172 FKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              L P+             E ++  +  TI   G  VD       +  +  E  +L+Q+
Sbjct: 488 HHVLRPMVAANEGLDRIYQLEIKVSAVLTTIERNGVKVDAEELGRQSHKLGQEMLRLEQK 547

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
              L      +    ++L   LF    L +   T     +T + VL+      P    + 
Sbjct: 548 AYELAGQP-FNLNSPKQLGEILFDRMQLPVVRKTASGAPSTDEDVLTKLALDYPLPQVLL 606

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R   S+      + L   +N       T     A  TGR +      QN+P  + +  
Sbjct: 607 EYR-GLSKLKSTYTDKLPRMINPATGRVHTRYSQAAVITGRLASSDPNLQNIPVRTEAGR 665

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   IA +G  L+ AD + IE R++A ++ +  
Sbjct: 666 R-------------------------VREAFIAEQG-MLLSADYSQIELRIMAHVSDDAN 699

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
              AF  GED++  T A  F VA A V+ DQR   K +                    G+
Sbjct: 700 LQSAFAAGEDIHRATAAEVFGVALADVSTDQRRAAKAIN--------------FGLIYGM 745

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +                                 A        A +     +  ++  V
Sbjct: 746 GVFGL------------------------------ASNLGITRDAAQAYIDRYFARYPGV 775

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +       +   +                             +    GR L   ++   R
Sbjct: 776 AMYMENTRRLARE--------------------------QGYVETVFGRRLQLPEI---R 806

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
                  +   R            +Q  + D++   M+         K    +++ VHDE
Sbjct: 807 GASGPRRQGAERAAINAP------MQGTAADLIKLAMVAVQDWLEAEKLQTRMIMQVHDE 860

Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E PD +       L  LM S       +PL AE    K +
Sbjct: 861 LVLEAPDNEIEVVKEALPRLMCSVAE--LRVPLVAEVGMGKNW 901


>gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31]
 gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31]
          Length = 973

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 100/716 (13%), Positives = 194/716 (27%), Gaps = 176/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
            +  D ET +                 +   +              H             
Sbjct: 385 IVAFDTETDALSS----------ATAGLCGVSLAISPGEACYIPVGHCEKDGLALEAAAD 434

Query: 50  -----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                   +   LK  LE+  V  +A N+ ++  VL       I +     T++++    
Sbjct: 435 LVQVPMEEVIAALKPLLEDPAVLKIAQNAKYDIAVLARY---GINVGPIEDTMLISYVLE 491

Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E        +  G + I+     +                      Y 
Sbjct: 492 AGLHGHGMDELSE--------LWLGHKPISF----KQVAGSGKGQISFKHVGLAEATAYA 539

Query: 162 KGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  ++  L+P  ++E          + L  +   + + G  VD      L+   
Sbjct: 540 AEDADVTLRLYNVLKPRLAREGLLTVYETLERPLPAVLAAMENDGIRVDPDTLRRLSNEF 599

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
            +     +   + L      +    +++   LF E  L     T     +T   VL +  
Sbjct: 600 SMRMADFEARAQELVGRP-FNLGSPKQIGDVLFGEMALKGGKKTATGQWSTDSDVLEALA 658

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL-GASRTGRWSGCVFPP 326
                   + + R   S+        L+ A+   G  R    +   A+ TGR S      
Sbjct: 659 LEHELPRVLLDWRQ-LSKLKGTYTENLIAAIAPGGGNRVHTSYALAATTTGRLSSSDPNL 717

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +    +                         +R   +A+ GK L+ AD + IE 
Sbjct: 718 QNIPIRTEEGRK-------------------------IRKAFVAAPGKVLISADYSQIEL 752

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +       KAF+ G D++  T +  FNV    +  + R   K +           
Sbjct: 753 RLLAHIGDIPQLKKAFQEGLDIHAMTASEMFNVPIEGMPSEVRRRAKAINF--------- 803

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++    A+ +                                        
Sbjct: 804 -----GIVYGISAFGLANQLSI------------------------------PQGEAGAY 828

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            K + ++   +            +                          +  +    GR
Sbjct: 829 IKTYFERFPGIQAYMEATKAFVRE--------------------------HGYVTTIFGR 862

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKA 620
            +   D+G              R            +Q  + D++   M+           
Sbjct: 863 KINIPDIGGKSVAHRQF---AERAAINAP------IQGAAADVMRRAMVRMPGALKAAGL 913

Query: 621 GYDIVLTVHDEIVCETPD-TDEFNASMLYHLM--TSNPSWAKGLPLKAEGYESKRY 673
              ++L VHDE+V E P+   +    +   +M   + P+    +PL  E   +  +
Sbjct: 914 SSRMLLQVHDELVFEAPEAEAQATIDVAREVMQGAAAPAVTISVPLTVEARAAANW 969


>gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO]
 gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO]
          Length = 892

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 115/704 (16%), Positives = 216/704 (30%), Gaps = 163/704 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQ 55
              +D ET S   +          D  +I F+              H             
Sbjct: 318 YFVLDLETDSLSPI----------DAEIIGFSISLPSKESYYVPLAHKNGPNVDKKSALN 367

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112
            LK  LEN    I+  N  ++ +VLK    ++ P+     T++ A           L  +
Sbjct: 368 NLKSILENQSAKIIGQNLKYDYSVLKMH-GIE-PVRPSFDTMIAAYLLNPDEKRFNLDEL 425

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              +K  + KM   +EL                       +     +Y   D  +TR ++
Sbjct: 426 A--MKFLNYKMISFEELF-------KDTSPLFGAVTFADVSVEDATKYSAEDADITRRLY 476

Query: 173 KRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           + L                E  L  +   +   G  +++     L+        +L Q++
Sbjct: 477 EILNIKLHEADLLEVLEKIEMPLIPVLVHMELEGVYMNIDYLKDLSSKYAARMNELSQQI 536

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278
            +       +    +++   LF +  +     T     +T   VL    +  P    +  
Sbjct: 537 YNHAG-EAFNLNSPKQVAHILFDKLKIQPTKKTSTGEPSTRADVLEELSEEHPIVRLILE 595

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            R +  +     L+ L + ++ + GR+  +    G + TGR S      QNLP       
Sbjct: 596 YR-KYQKIKSTYLDVLPKLVHPETGRIHSSFHQTG-TATGRLSSSDPNLQNLPSKQEESR 653

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396
           E                         +R  V+   +  K++ AD + IE RVLA ++ +Q
Sbjct: 654 E-------------------------IRKAVVPQRDSWKILSADYSQIELRVLAHLSNDQ 688

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF+  ED++  T +R F V   QVT   R+IGK++  ++ Y              G
Sbjct: 689 NLIEAFKKDEDIHNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIYGVSP---------YG 739

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L+                                             ++    +   +  
Sbjct: 740 LS-----------------------------------QRTGLSYDQAQKFIGEYFSLYPS 764

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E + ++    +                           +  +    GR      + + 
Sbjct: 765 VKEYFAKIVSYAKT--------------------------HGYVRTMFGRRREVPQLRSK 798

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
            + +     +  R            +Q  + DI+   M+N        +    ++L VHD
Sbjct: 799 NASVRQ---EGERIAINTP------IQGTAADIMKLAMINLYDKIKQMRLQSKMILQVHD 849

Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E PD +      L    M +       +PLK +   S  +
Sbjct: 850 ELVFEVPDEEVEIVKNLVRDSMENVVR--LSVPLKVDLKISDSW 891


>gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2]
 gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2]
          Length = 891

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/708 (14%), Positives = 209/708 (29%), Gaps = 169/708 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
             L +D ET S   +             ++  +F  + H        H            
Sbjct: 313 DILSVDTETTSKHPML----------AKLVGISFAVEPHRAYYIPVGHTGMDAKKQPDLS 362

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108
            +  +++  LEN +V  V  N  ++  VL     + +       T++ +          +
Sbjct: 363 RVIALIRPLLENPEVKKVGQNIKYDYIVLTRH-GIRMQGLG-FDTMIASHLLNPSQRGHS 420

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L  +   L           + I      +            +    +   +Y   D  +T
Sbjct: 421 LDKIAMDL--------LDHKTIRY----KEVTGSGKTQIGFNEVEIQTALDYAAEDADIT 468

Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
                 L+    +          E  L  +   +   G  VD      L++  + E   L
Sbjct: 469 LLCHGILKQKLQESNLLDLMNQVEMPLITVLADMEMHGIKVDRKKLGELSKTFEQEMMTL 528

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSNKKLTPQA 273
           + ++ +L      +    ++L T LF +  L       +    +T   VL+   +     
Sbjct: 529 ETQIYALAG-ETFNINSSQQLGTILFEKLQLPAKKKTKKKTGYSTDVEVLNELAEHHELP 587

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            ++   R    +      + L E ++ + GR+  +      + TGR S      QN+P  
Sbjct: 588 EKILRYR-SLGKLKSTYSDALQELIHPETGRIHTSFNQAI-TATGRLSSSDPNLQNIPIR 645

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +   +                          +R   +   G  LV AD + IE R+LA  
Sbjct: 646 TNEGK-------------------------MIREAFVPEPGHILVAADYSQIELRLLAHF 680

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A ++  +++F   ED++  T A  F   P  +T+D R   K                   
Sbjct: 681 AEDEILIQSFRNDEDIHTRTAAEVFQAFPEFITEDLRRQAKA--------------INFG 726

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++                                + A E        +    ++  
Sbjct: 727 IMYGMS------------------------------AFKLAKEINVTRKTAQTYIDSYFA 756

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +++ V    ++  +  + T E                          +    GR     D
Sbjct: 757 RYAGVKRFIDKTIEQAKTTGE--------------------------VTTILGRKRRLND 790

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626
           +  +        +   R            VQ  + D++   M+N  +          ++L
Sbjct: 791 INASNV---NLRKLAERAAINTP------VQGSAADLIKLAMINMDRELKKTPLKSRMLL 841

Query: 627 TVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +VHDEI+ ETP  ++     L   +M     +A  +PLK        +
Sbjct: 842 SVHDEIIFETPLAEKEALMDLARQVMEGV--FALKVPLKVNIAAGINW 887


>gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
 gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608]
          Length = 920

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 97/698 (13%), Positives = 195/698 (27%), Gaps = 159/698 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           + +D ET S   ++            ++  +F  +++         D      +  + K 
Sbjct: 350 VSLDTETTSTDAIS----------AELVGLSFSVEENRAFYVAIPADRQEATRIVGIFKP 399

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117
             EN  +  +  N  ++  VL   + + +   +   T++            +  + E L 
Sbjct: 400 LYENEQILKIGQNIKYDYEVLS-HYGVTLQ-GKMFDTMIAHYLIQPELHHNMDYMAETL- 456

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               +    +EL+              + +     +     EY   D  +T  +   LEP
Sbjct: 457 -LGYRTIHIEELLG---------PKGKKQRNMRDLSPTDIYEYAAEDADITLRLKHVLEP 506

Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +   +   G C+D       ++I      + +QE+     
Sbjct: 507 HLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEAG 566

Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    +++   LF +  +      T+T    T + VL S +   P    + N R  
Sbjct: 567 -ETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNILNYR-G 624

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +     ++ L + +N       T      + TGR S      QN+P  +   +E    
Sbjct: 625 MKKLLSTYIDALPKLINPRTGHIHTSFNQAQTSTGRLSSSDPNLQNIPVRTDDGKE---- 680

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R C I  +G     AD + IE R++A ++G++  ++AF
Sbjct: 681 ---------------------IRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAF 719

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A+ ++    +VT  QR   K                      G+     
Sbjct: 720 REGHDIHRATAAKIWHEDIEKVTDAQRKKAKQAN--------------FGIIYGITTYGL 765

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A                                     +    + + +     +V     
Sbjct: 766 AQR------------------------------MGIPNSEARELIQDYFHTFPKVKAYME 795

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           +  +                                       R     D+ +  +   T
Sbjct: 796 QAKETAR--------------------------AKGYAETLFHRRRYLPDINSRNA---T 826

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q    DI+   M+   K          ++L VHDE+    
Sbjct: 827 VRGFAERNAINAP------IQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSV 880

Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              +      +    M         +PL A+      +
Sbjct: 881 YPEEREQVERIVIEEMQHACQ--LNVPLTADAGWGSNW 916


>gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145]
 gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145]
          Length = 931

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 100/703 (14%), Positives = 205/703 (29%), Gaps = 164/703 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             + +D ET              A D  ++  +F +                     +VL
Sbjct: 358 KEVSMDTETTGLD----------ANDAELVGLSFAYKAREAYYIAVPKHEKGILEFLEVL 407

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE- 114
           +  LEN ++  +  N  ++  +LK    +++    +  T++            +  + E 
Sbjct: 408 RPLLENENIRKIGQNLKYDYIILKWY-GIELK-GEFFDTMLAHYLLDPDTRHNMDVLSEN 465

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L  +   + E                                 +Y   D  VT ++ + 
Sbjct: 466 YLGYTPISITEL-------------IGKGKNQLNMRDIDVAKVTDYAAEDADVTLQLQQV 512

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            EP+             E  L  +   +   G  +DV      ++ +  +  KL+  +  
Sbjct: 513 FEPMLIEAQAEKLAKEVENPLINVLGDMEKEGVKIDVEQLIRFSRDLQDDIGKLENTIYH 572

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L   LF +  L  +   T+T    T + VL +    +     + + 
Sbjct: 573 KAGHR-FNIASPKQLGEILFDKLQLDPKAKKTKTGQYQTGEDVLLALANKSDIVKDILDF 631

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R    +     ++ L   +N   GR+  +     A+ TGR S      QN+P  +    E
Sbjct: 632 RQ-LQKLKSTYVDALPLMINKKTGRVHTSYNQAVAA-TGRLSSNNPNLQNIPIRTEKGRE 689

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397
                                    VR   I   E   L+ AD + IE R++A ++ ++ 
Sbjct: 690 -------------------------VRKAFIPRDENHILLSADYSQIELRIIAEISKDEN 724

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF  G D++  T A+ + V                                      
Sbjct: 725 MMDAFSKGLDIHTATAAKVYGV-------------------------------------- 746

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                A+L    S       A NF     ++    +            + + + +++  +
Sbjct: 747 -----ANLEDVTSDQRRNAKAVNFGIIYGQSAFGLSQNLGIPRKEAAEIIENYFEQYKGI 801

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
               ++      +                          N  +    GR    RD+ +  
Sbjct: 802 KNYMSDTMNFARE--------------------------NGYVETIMGRRRYLRDINSAN 835

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
           +   T      R            +Q  + D++   M+N        K    + + VHDE
Sbjct: 836 A---TVRGFAERNAINAP------IQGSAADMIKIAMLNIHKDLIDRKLQSKMTMQVHDE 886

Query: 632 IVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +V +   T++     +    M +       +P+  E  E   +
Sbjct: 887 LVFDVLVTEKDIVKEIIMDRMKNAIKTT--VPIVVEIGEGLNW 927


>gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1]
 gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1]
          Length = 893

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 114/703 (16%), Positives = 212/703 (30%), Gaps = 165/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL 57
            ID ET S                 +   +  F           H       +  + + L
Sbjct: 321 AIDLETSSLDPFEC----------DIAGISLSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           KE LE+    IV  N  F+  VL     ++ P+     T++ A           L  +  
Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVLM-VKGIE-PVPPHFDTMIAAYLIEPNEKKFNLDDLA- 427

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            LK    KM   +EL++                            Y   D  +T  ++K 
Sbjct: 428 -LKFLGYKMTSYQELMSFSSP--------LFGFSFVDVPLEKAANYSCEDADITYRLYKT 478

Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L                E  L  +   +   G  VD      L++    +  +L +E+  
Sbjct: 479 LSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL-EDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +      +    +++   LF + G+      T+    +T   VL            +   
Sbjct: 539 IAG-EPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R +  +     ++ L + +N   GR+  +    G + TGR S      QNLP  S   +E
Sbjct: 598 R-KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLPTKSEEGKE 655

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397
                                    +R  ++       +V AD + IE R+LA ++G++ 
Sbjct: 656 -------------------------IRKAIVPQDPNWWIVSADYSQIELRILAHLSGDEN 690

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L+AFE G D++  T +R FNV P +VT++ R               A      +   G+
Sbjct: 691 LLRAFEEGIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGV 736

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                +                              +         E++   +   + +V
Sbjct: 737 TPYGLS------------------------------VRLGVPVKEAEKMIVNYFVLYPKV 766

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +    +    ++                             +    GR      +    
Sbjct: 767 RDYIQRVVSEAKE--------------------------KGYVRTLFGRKRDIPQLMARD 800

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
                T  +  R            +Q  + DI+   M+         K    +++ VHDE
Sbjct: 801 ---RNTQAEGERIAINTP------IQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDE 851

Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E P+ ++     ++   MT+       +PL+ +    K +
Sbjct: 852 LVFEVPNEEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892


>gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4]
 gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4]
          Length = 930

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/697 (15%), Positives = 200/697 (28%), Gaps = 156/697 (22%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQV 56
           D ET S           Y E   ++  +F  +          HD            +   
Sbjct: 356 DTETTSLN---------YME-AKMVGLSFAIEPGKAAYLPLAHDYADAPEQLDSEQVLAK 405

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVG 113
           LK  LE+  +  V  N  ++ ++L     + +       T++ +           +  + 
Sbjct: 406 LKPLLEDPSLLKVGQNLKYDMSILAN-VGIALKGVA-FDTMLESYVFNSVASKHNMDDLA 463

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                       G + I+     E       +    ++        Y   D  +T  + +
Sbjct: 464 LKY--------LGHKNISF----EEIAGKGVKQLTFNQIPLETAAPYAAEDADITLRLHQ 511

Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L  +   I  +G  +D  L    +  +  +  +L+Q+ 
Sbjct: 512 HLWPRLQKASELASVFTDIELPLVSILSQIERQGVLIDSMLLGQQSDELARKIDELEQKA 571

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+   F + G  +   T     +T + VL       P    +  
Sbjct: 572 YEIAG-EPFNLGSTKQLQALFFEKLGYPVLKKTPKGAPSTAEEVLVELALDYPLPKIILE 630

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L   ++   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 631 HR-SLSKLKSTYTDKLPLMVDGKTGRVHTSYHQAIAA-TGRLSSSEPNLQNIPIRTEEGR 688

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   +A EG+K++ AD + IE R++A ++ ++ 
Sbjct: 689 R-------------------------IRHAFVAPEGRKILAADYSQIELRIMAHLSQDKG 723

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G+D++  T A  F+V  ++VT +QR   K +   L Y   A           L
Sbjct: 724 LLSAFAEGKDIHRATAAEVFDVDFSEVTSEQRRRAKAVNFGLIYGMSA-----FGLARQL 778

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           ++         +   + +     +    +    E        G          R    R 
Sbjct: 779 DIPRHEAQQYIDIYFKRYPGVLKYMEDTRAAAAEQGYVSTLYGRRLYLPAIKDRNAMRR- 837

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   +A       G A    K+                                  
Sbjct: 838 ----QAAERAAINAPMQGTAADIIKK---------------------------------- 859

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                             +  E   Q    +I    M+          + VHDE+V E  
Sbjct: 860 ------------AMINIAQWIETETQG---EIT---MI----------MQVHDELVFEVD 891

Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                +    +  LM    S    + L AE      +
Sbjct: 892 ADKADSLKLKVCELMAQAAS--LDVELLAEAGIGDNW 926


>gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1]
          Length = 968

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/715 (13%), Positives = 208/715 (29%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52
               + ET S   +             +I F+              H             
Sbjct: 380 YFAFNIETTSLNPI----------QAKIIGFSLALQPEKAAYIPLEHTEEGCDLLGGGCV 429

Query: 53  --------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                   +  +LK  LE+  V  + +N  +   ++K      I    +   ++++ +  
Sbjct: 430 VTQIETQKVLALLKPILEDQAVLKIGYNMKYNWLIMKQYA---IVTQPFDDIMLISYALD 486

Query: 105 ---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                     + E       K    K+L               +     +   +    Y 
Sbjct: 487 AGTSTHNRDILSER--WLKHKPIAYKDLTHN----------GKKITSFAQVDLKQATFYA 534

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                +T  +++ L+P              ++ L  +   + +RG  VD  +   L+  +
Sbjct: 535 AEGADITLRLWQVLKPQLVAQGVTKIYERLDRPLIEVLAKMEERGILVDRQILSRLSCEL 594

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                 L++E+  L      +    ++L   LF + GL     T+    +T  ++L    
Sbjct: 595 AQAALSLEEEIYQLVG-ERFNIASPKQLSDILFGKMGLPGGVKTKNGQWSTSAQILEELA 653

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +  +     T   L  + TGR S      Q
Sbjct: 654 AEGHTLPRKIVDWRQLTKLKSTYTDALPYYILPETGRVHTNYSLATTSTGRLSSSEPNLQ 713

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA +G  L+ AD + IE R
Sbjct: 714 NIPIRTPEGRK-------------------------IRTAFIAPKGCVLLSADYSQIELR 748

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +A      +AF   +D++  T ++ F VA   +  D R   K +            
Sbjct: 749 ILAHIANITALKEAFAQDQDIHAITASQIFGVAVEGMPSDIRRRAKAINF---------- 798

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A+ +                                      R  
Sbjct: 799 ----GIIYGISAFGLANQLSI------------------------------SRNEASRYI 824

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             + ++   + +          Q                          +  +    GR 
Sbjct: 825 DIYFERFPGIKDYMETTKSFARQ--------------------------HGYVETIFGRR 858

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAG 621
           + Y ++    S          R            +Q  + DI+   M+         K  
Sbjct: 859 IHYPEIKATNS---QIRTFNERAAINAP------IQGSAADIIRRAMIQMEGALKKEKLS 909

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+T+     +L   +M +   P+ +  +PLK +   ++ +
Sbjct: 910 AKMLLQVHDELIFEVPETESEKTKVLVTKVMENAAMPALSLSVPLKVKVAAAQNW 964


>gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32]
 gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32]
          Length = 922

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/697 (14%), Positives = 196/697 (28%), Gaps = 150/697 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + +D ET S   +             ++  +F  +          HD             
Sbjct: 345 IAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + L+  LE+  V  V  N  ++ +VL     + +       T++ +      ++     
Sbjct: 395 LEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQ-GVVFDTMLESYVFNSVAS----- 447

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     +   K L  +    E       +    ++    +   Y   D  +T  + +
Sbjct: 448 ---RHDMDGL-AIKYLGHKNIGFEDIAGKGAKQLTFNQIPLEVAAPYAAEDADITLRLHQ 503

Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L  +   I  +G  +D  L    +  +  +   L+++ 
Sbjct: 504 HLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEKA 563

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+   F + G  +   T     +T + VL       P    +  
Sbjct: 564 YEIAG-EKFNLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLPKVILE 622

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L   +N   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 623 HR-SLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 680

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA  G+K++ AD + IE R++A ++ +  
Sbjct: 681 R-------------------------IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAG 715

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAF  G+D++  T A  F      VT +QR   K +   L Y   A           L
Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSA-----FGLARQL 770

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           ++         ++    +     +    +    E        G      +   R    R 
Sbjct: 771 DIPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRR- 829

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   +A       G A    K+  + +    K +    +                 
Sbjct: 830 ----QGAERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEI----------------- 868

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                                               M+          + VHDE+V E  
Sbjct: 869 -----------------------------------AMI----------MQVHDELVFEVD 883

Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                     +  LM         + L AE      +
Sbjct: 884 ADKAETLKQKVCELMAKAA--ILDVALLAEAGIGDNW 918


>gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498]
          Length = 968

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 98/715 (13%), Positives = 211/715 (29%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
               D +T S   +             ++ F+              H             
Sbjct: 380 YFSFDTKTISLDPM----------QAKLVGFSLALQPGKAAYVPLEHVAEEENLLGGGRI 429

Query: 50  -----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN- 103
                      +LK  LEN  V  +  N  ++  V+K     +I +  +  T++L+ +  
Sbjct: 430 VPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQY---NIVMCSFDDTMLLSYALE 486

Query: 104 --GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + +           G + I+     +       +     +   +    Y 
Sbjct: 487 AGISTHGMDVLSKRW--------LGHKPISY----KDLTHSGRKIVSFAQVDLKQATLYA 534

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  +T  +++ L+P              ++ L  +   + +RG  VD  +   L+  +
Sbjct: 535 AEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGEL 594

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL----HLEDLTETTCQRVLSSNK 267
                 L++E+  L      +    ++L   LF + GL      +    +T  + L    
Sbjct: 595 AQAALNLEEEIYQLVG-EKFNIASPKQLGDILFGKMGLLGGAKTKSGQWSTSAQTLEELA 653

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +        T   L  + TGR S      Q
Sbjct: 654 AEGHILPRKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLATTLTGRLSSSEPNLQ 713

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R   +AS+G  L+ AD + IE R
Sbjct: 714 NIPVRTAEGRK-------------------------IRKAFVASKGYLLLSADYSQIELR 748

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +A      +AF  G+D++  T ++ F VA   +T + R   K +            
Sbjct: 749 ILAHVADITALKEAFTKGQDIHTMTASQMFGVAVEGMTSEIRRRAKAINF---------- 798

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A                                            
Sbjct: 799 ----GIIYGISPFGLASQ------------------------------LGISRKEASDYI 824

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + ++   + +      +       +G                             GR 
Sbjct: 825 QLYFERFPGIEDYM---ERTKIFARHHGYVETI-----------------------FGRR 858

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
           + Y ++    +  +       R            +Q  + DI+   M+    A       
Sbjct: 859 IHYPEIK---TAKSQIRAFNERAAINAP------IQGSAADIIRRAMIQMENALEKERLS 909

Query: 622 YDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P ++    A ++  +M +   P+ +  +PL+ +   ++ +
Sbjct: 910 AKMLLQVHDELIFEVPKSESTKTAILIKKVMENATMPALSLSVPLEVKVIAAQNW 964


>gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44]
 gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44]
          Length = 937

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/705 (14%), Positives = 202/705 (28%), Gaps = 167/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S  ++             ++  +F             H+           ++ 
Sbjct: 364 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDMDMVL 413

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV 112
             LK  LE+     +  +  +++ V      + +  +    T++ +       P  L ++
Sbjct: 414 ARLKPWLEDAGKKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 471

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                           +       E          P  + +      Y   D   T ++ 
Sbjct: 472 ALRH------------VSRSGISYEDLCGKGKNQIPFAQVSVDKAAAYSCEDSDQTLDVH 519

Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             L P                +       I   G  +D       +  +     KL++E 
Sbjct: 520 NTLWPRIQAHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLEEEA 579

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L    F + G+ +   T     +T + VL    +  P   ++  
Sbjct: 580 YEIAGQP-FNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 638

Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L +     DGR+        A  TGR S      QN+P  +    
Sbjct: 639 HR-SLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVA-VTGRLSSNDPNLQNIPVRTPEGR 696

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   +A EGK +  AD + IE R++A ++G++ 
Sbjct: 697 R-------------------------VREAFVAPEGKLIASADYSQIELRIMAHLSGDEA 731

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF+ G D++  T A  F V+  +V+ +QR   KV+                    G+
Sbjct: 732 LLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVIN--------------FGLIYGM 777

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A        A       + Q++  V
Sbjct: 778 SSFGL------------------------------AKNLGIETKAAAAYIDKYFQRYPGV 807

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
               ++  +                                 +    GR LV  ++    
Sbjct: 808 KRYMDQTVELAH--------------------------AQGYVETVFGRRLVLPEINGGN 841

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
                  +   R            +Q  + D++ + M+         K    +++ VHDE
Sbjct: 842 GPRK---KAAERAAINAP------MQGTAADLIKKAMVAVQARLDTEKPEVLVIMQVHDE 892

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +V E P++      + +  +M         +PL AE      + K
Sbjct: 893 LVFELPESARDWVQAEIPAIMAGVAD--LSVPLLAEIGFGSSWEK 935


>gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
 gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno]
          Length = 928

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 94/700 (13%), Positives = 202/700 (28%), Gaps = 161/700 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            +  D ET +   L          +  ++  +F +  H         +      + +  +
Sbjct: 357 EVCFDTETTNVDAL----------EAELVGISFCWAAHKGHYLPFPKEKEAATKLIEQFR 406

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN  +  V  N  ++  VL+    +++       T++            +  + E  
Sbjct: 407 PFFENEQIAKVGQNLKYDLKVLQNY-GVEVQ-GALFDTMIAHYLLNPDMRHNMDILSETY 464

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              +      + LI                +           EY   D  VT ++    +
Sbjct: 465 --LNYTPIAIESLI----------GKGKAQRSMRTVPIDEVKEYAVEDADVTWQLKNVFQ 512

Query: 177 PLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
               +             L  +   +   G  +DV      ++ +D +  +L+  +    
Sbjct: 513 SQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDFLKEYSKTLDADIAQLETAIAQQA 572

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L   LF +  +      T+T    T + VL+           +     
Sbjct: 573 G-ETFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVADIL-EWR 630

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           +  +     ++ L   +N       T      + TGR S      QN+P  +        
Sbjct: 631 QVQKLKSTYVDALPLEVNKSTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTPRG----- 685

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   IA      L+ AD + IE R++A ++ E   ++
Sbjct: 686 --------------------QQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIE 725

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           +F  GED++  T A+ FNV   +VT++QR+  K +   +                G++  
Sbjct: 726 SFLHGEDIHRATAAKVFNVPLEEVTREQRSHAKTVNFGII--------------YGVSAF 771

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +                                     +  + +   +   +  +   
Sbjct: 772 GLSAQTD------------------------------LSRSESKELIDTYYATYPNLRNY 801

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            N   +   +                          +  +    GR     D+ ++   +
Sbjct: 802 INRQIEFARE--------------------------HGYVETILGRRRYLPDIHSHNQVV 835

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634
                +               +Q  + DI+   M+         K    ++L VHDE+V 
Sbjct: 836 RGGAERN---------AVNAPIQGSAADIIKIAMIRIHNQLQAQKLQTRMLLQVHDELVF 886

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + P T+      ++   M +  + A  +PL A+      +
Sbjct: 887 DVPKTELELVKPLIKDAMENAFTLA--VPLVADLGVGNNW 924


>gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18]
 gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18]
          Length = 892

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 115/705 (16%), Positives = 195/705 (27%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVLKEAL-- 61
            ID ET S   L          D  ++ +A     H        H     P+ L EAL  
Sbjct: 317 AIDLETTSLNPL----------DASIVGYAVSCLAHEAYYIPIGHRYLGAPEQLPEALVL 366

Query: 62  -------ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
                   + D   +  N  ++  VL+    +++    W  T++ A           L A
Sbjct: 367 ELLGPLLTDPDRKKIGQNLKYDYQVLQQ-SGVELAGI-WCDTMLAAYLVNPSRNSQGLDA 424

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                +I+                          G Y   D   T  +
Sbjct: 425 LALEY--------LDHRMISY----AEVAGTGKCELNFSEVDLDRAGPYSCEDADATYLL 472

Query: 172 FKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L P              E  L  +   +   G  +DV L   L+     +  +L+ +
Sbjct: 473 HEILLPKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKELSTGFGRQLIELEAK 532

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276
           +     G   +    ++L   LF   GL +   T+     +T    L    +    A  +
Sbjct: 533 IHEHCGGS-FNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVARLL 591

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   S+      + L   ++   GR+  +      + TGR S      QN+P     
Sbjct: 592 LQYR-SISKLKSTYTDALPRLVDPKTGRVHTSYNQAI-TNTGRLSSSDPNLQNIPVRGEE 649

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G  ++ AD + IE RVLA ++G+
Sbjct: 650 GRG-------------------------IRRAFIAEPGSLILSADYSQIELRVLAHLSGD 684

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +   +AF  GED++  T A  F + P  VT + R                          
Sbjct: 685 RVLCEAFAAGEDIHRRTAAEVFGMFPELVTAEMRRQA----------------------- 721

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                   NF     +     A E        +   + + ++HS
Sbjct: 722 ---------------------KVINFGVIYGQGAFSLAKELGVAPKQAKAFIENYFERHS 760

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                 +      E                              +    GR L   ++ +
Sbjct: 761 GARSFLDRCIAEAETC--------------------------GFVTTILGRRLQIPEIAS 794

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
                        R  T         +Q  + DI+   M+         K    +++ VH
Sbjct: 795 KN---GNARAFAQRNAT------NYPIQGSAADIIKAAMIRVTRRMLEEKVASRLIMQVH 845

Query: 630 DEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P  +      L    M         +PLK +      +
Sbjct: 846 DELVFEVPRNERELMEDLVRAEMEGALP--LSVPLKVDLNFGLNW 888


>gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319]
 gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319]
          Length = 920

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 98/698 (14%), Positives = 186/698 (26%), Gaps = 155/698 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-HDPVMPQV---L 57
            TL +D ET S   ++            ++  +F  ++          +     +     
Sbjct: 348 KTLSLDTETTSTDAIS----------AELVGLSFSVEEKEAYYVPIPENREEALKRVAIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K   EN  +  V  N  ++  VL     + +       T++                 L+
Sbjct: 398 KPVYENESILKVGQNIKYDYEVLSNY-GVKLK-GAMFDTMIAHYLIQP---------ELR 446

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            +   M E           E       + K     +     EY   D  +T  +   L P
Sbjct: 447 HNMDYMAETLLGYQTIHIEELLGSKGKKQKNMRDLSPTDIYEYAAEDADITLRLKNVLAP 506

Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +   +   G  +D       ++I      + + ++     
Sbjct: 507 KLKELNVEELFWSIEMPLVRVLADMELTGVRIDTEALKETSKIFTERMRQYEVKIFKEAG 566

Query: 228 GLVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    +++   LF +   L     T+T    T + VL S +   P    + N R  
Sbjct: 567 -EEFNISSPKQVGDILFGKMQILDKPKKTKTGQYVTSEEVLQSIESKHPIVRNILNYR-G 624

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +     +  L + +NS      T      + TGR S      QN+P  +   +E    
Sbjct: 625 MKKLLSTYVEALPKLINSRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKE---- 680

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R C I  EG     AD + IE R++A ++ +   ++AF
Sbjct: 681 ---------------------IRKCFIPEEGCMFFSADYSQIELRIMAHLSEDDNMMEAF 719

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A+ ++ A   VT  QR   K                      G+     
Sbjct: 720 REGYDIHRATAAKIWHEALDDVTDAQRKKAKQAN--------------FGIIYGITTFGL 765

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A  ++                                      + + + +   +V     
Sbjct: 766 AQRMEI------------------------------PNNEARALIQDYFRTFPKVQAYME 795

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +                                       R     ++ +      T
Sbjct: 796 HAKELARS--------------------------KGYAETLFHRRRYLPNINSRN---GT 826

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q    DI+   M+              ++L VHDE+    
Sbjct: 827 IRGFDERNAINAP------IQGTEADIIKVAMVRIWNRFKEEGIRSKMILQVHDELNFSV 880

Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              +      +    M +   +   +PL A+    K +
Sbjct: 881 YPDEREKVEKIVLEEMQNA--YPLNVPLIADAGWGKNW 916


>gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407]
          Length = 598

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 221/589 (37%), Positives = 321/589 (54%), Gaps = 24/589 (4%)

Query: 104 GLPSALKAVGEALKLSSQK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEY 160
           G   AL  + E L +   K   +EGK LI  FCK         R     H E WR F  Y
Sbjct: 16  GSGGALGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAY 75

Query: 161 CKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
              D+   RE++KRL   + +  EL  W+ DQ INDRG C+DV LA      VD E+ +L
Sbjct: 76  AGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRL 135

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
            +  + +T G V ++   + L   +    G+ L D+  +T +R ++    L     ++  
Sbjct: 136 AKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLA 194

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R++AS ++  K   L++ ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E+
Sbjct: 195 IRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQ 254

Query: 339 LDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           +D+ I  L          + +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+
Sbjct: 255 IDEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEE 314

Query: 397 WKLKAFETG-----EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           WKL AF         DLY   YA++F++AP  V K  R IGKVMEL LGY GG  AF   
Sbjct: 315 WKLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITF 374

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A   GL+L+  A+    N   +   +A+++     +    + + +     AC+ +K+ WR
Sbjct: 375 ALVYGLDLDGLANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWR 433

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           + H    + W EL       I   +  +         + +++D   L + LPSGR++ Y 
Sbjct: 434 RAHPATCDFWYELECTVRTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYP 488

Query: 572 DV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
                  N +Y+  N+ +R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVL
Sbjct: 489 SPVIEQGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVL 548

Query: 627 TVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           TVHDE++ E+PDT++FN   L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 549 TVHDEVITESPDTEDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 597


>gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2]
 gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2]
          Length = 931

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/705 (14%), Positives = 201/705 (28%), Gaps = 167/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S  ++             ++  +F             H+           ++ 
Sbjct: 358 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLNMDMVL 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV 112
             LK  LE+     +  +  +++ V      + +  +    T++ +       P  L ++
Sbjct: 408 ARLKPWLEDAGKKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 465

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                           +       E          P  + +      Y   D   T ++ 
Sbjct: 466 ALRH------------VSRSGISYEDLCGKGKNQIPFAQVSVDKAAAYSCEDSDQTLDVH 513

Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             L P                +       I   G  +D       +  +     KL++E 
Sbjct: 514 NTLWPRIQAHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLEEEA 573

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L    F + G+ +   T     +T + VL    +  P   ++  
Sbjct: 574 YEIAGQP-FNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 632

Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L +     DGR+        A  TGR S      QN+P  +    
Sbjct: 633 HR-SLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVA-VTGRLSSNDPNLQNIPVRTPEGR 690

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   +A EGK +  AD + IE R++A ++G++ 
Sbjct: 691 R-------------------------VREAFVAPEGKLIASADYSQIELRIMAHLSGDEA 725

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF+ G D++  T A  F V+  +V+ +QR   KV+                    G+
Sbjct: 726 LLSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVIN--------------FGLIYGM 771

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A        A       + Q++  V
Sbjct: 772 SSFGL------------------------------AKNLGIETKAAAAYIDKYFQRYPGV 801

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
               ++  +                                 +    GR LV  ++    
Sbjct: 802 KRYMDQTVELAH--------------------------AQGYVETVFGRRLVLPEINGGN 835

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
                  +   R            +Q  + D++ + M+         K    +++ VHDE
Sbjct: 836 GPRK---KAAERAAINAP------MQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDE 886

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +V E P+       + +  +M         +PL AE      + K
Sbjct: 887 LVFELPEAARDWVQAEIPSIMAGVAD--LSVPLLAEIGFGSSWEK 929


>gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
 gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19]
          Length = 959

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/721 (15%), Positives = 216/721 (29%), Gaps = 180/721 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    DL+       A    +   +   D +        H             
Sbjct: 365 VIAVDTET---DDLS-------ATHAKLCGISLSTDTNCACYIPLGHLASDGLDFGGGDD 414

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                      +LK  LEN ++  V  N  ++ +VLK      I +  +  T++++    
Sbjct: 415 LKQIPLDQAIALLKPVLENRNILKVGQNIKYDLSVLKRY---GIDVAPYDDTMLMSYVVE 471

Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + +        +  G   I      +         K     A +   +Y 
Sbjct: 472 GGLHGHGMDELSQ--------LHLGHTPIPF----KQVAGSGKTLKSFKFVALKEATQYA 519

Query: 162 KGDVTVTREIFKRLEPLSSKEQE----------LWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  ++  L+P   +++           +      +   G  VD  +   L+Q  
Sbjct: 520 AEDADVTLRLWHVLKPRLVRDRLNTVYETLERGMPKALSEMELNGIRVDPQVLRNLSQDF 579

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK 267
                 ++QE  +       +    ++L    F E  L     T +    T  +VL    
Sbjct: 580 GTRMNAIEQEAHAHLGRP-FNLNSPQQLGVVFFDEMKLPGGKRTASGQWATDVKVLEDIA 638

Query: 268 K------LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           +            ++  +  + ++      + LVE  +   +   T   L ++ TGR + 
Sbjct: 639 EGKNGTGAGQTLAKLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSFHLASTTTGRLAS 698

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+P  +    +                         +R+  IA  G KL+ AD 
Sbjct: 699 NEPNLQNIPIRTGEGRK-------------------------IRTAFIAKPGCKLISADY 733

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA +   +   KAF  G+D++  T +  F V  A +T + R   K +      
Sbjct: 734 SQIELRLLAHIGDIEQLKKAFSDGQDIHAMTASEMFGVPMADMTSEIRRRAKAINF---- 789

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         G++    A+ +  +                                
Sbjct: 790 ----------GIIYGISGFGLANQLGIDQG------------------------------ 809

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              R  K + ++   + +  +   Q                              N  + 
Sbjct: 810 EASRYIKTYFERFPGIKDYMDATKQFLRD--------------------------NGFVQ 843

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----A 617
              GR +   ++      +        R            +Q  + DI+   MM      
Sbjct: 844 TLMGRKIHIPEINGKGGAIK---AFAERAAINAP------IQGTAADIIRRAMMRMQPRL 894

Query: 618 TKAGY--DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKR 672
             AG+   ++L VHDE++ E P+ +      ++  +M +   P+    +PL  E   +  
Sbjct: 895 DAAGFTTRMLLQVHDELIFEAPEAEVAAVIPLIQEVMQNAALPAVQISVPLVVEAKAANN 954

Query: 673 Y 673
           +
Sbjct: 955 W 955


>gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae
           bacterium]
          Length = 894

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/704 (14%), Positives = 201/704 (28%), Gaps = 166/704 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEAL 61
              +D ET S   +             V+  +   +          H    +P+ L   L
Sbjct: 320 IFALDLETTSLNPV----------QAHVVGISLSCEAGVACYIPLAHRYFGVPEQLDLDL 369

Query: 62  EN---------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SAL 109
                        +  V  N  ++  VLK+   +++ +     T++ +           +
Sbjct: 370 VLKKLKPLLEDPKLKKVGQNIKYDLIVLKS-EGVNL-VGVAFDTMLASYILNPSGRRHNM 427

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             +                L     K +       +     +    L  EY   D  +T 
Sbjct: 428 NDMARDY------------LGYTTTKYKEVVGTASKEIGFDKVDIELATEYAAEDADITW 475

Query: 170 EIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +++ L PL            E  L  +   +   G  +D +    L+Q++  +     +
Sbjct: 476 RLYENLSPLLQGDDFKLLQELELPLIEVLAEMELHGMKLDKSHLQKLSQLIQQKLEDQQK 535

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           E+ SL      +    ++L   LF +  L +   T+   +T   VL            V 
Sbjct: 536 EIYSLAG-EEFNINSPKQLSVILFEKLELPVIKKTKNGYSTDVSVLEQLAAEHELPDVVL 594

Query: 278 NNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             R    +      + L E + N+ GR+  +     A+ TGR S      QN+P  +   
Sbjct: 595 TYRQ-LVKLKSTYADALQEDIFNNTGRVHTSFNQTVAA-TGRLSSSNPNLQNIPIRTEMG 652

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            E                         +R   +A     L+ AD + +E RVLA ++ ++
Sbjct: 653 RE-------------------------IRKAFVAEGNNHLLSADYSQVELRVLAHLSEDE 687

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF+ GED++  T    F   P ++  + R + K +                    G
Sbjct: 688 ALVDAFQMGEDIHTRTACEIFGTTPERLDAEARRMAKAVNF--------------GIVYG 733

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L+    +  +K                                    ++    +   + +
Sbjct: 734 LSAFGLSKQLKIY------------------------------PKDAKKFIDQYFALYKK 763

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V     E     ++                              +    R     D+ + 
Sbjct: 764 VKVYMVETVAQAKE--------------------------VGYTLTLMNRRRYLPDLKSQ 797

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
                       R            VQ  + D++   M+         K    ++L VHD
Sbjct: 798 N---RQVRESAERIAINSP------VQGSAADLIKLAMIRLAEQIRTKKLKSRMILQVHD 848

Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E P+ +E     L    M         +PL  +    + +
Sbjct: 849 ELVFECPEDEEQEMRALVTKEMEEVMP--LKVPLIVDIGWGENW 890


>gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E]
          Length = 959

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
              ID ET               +   ++  +    D+        H             
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
              +    K  LEN ++  +  +  ++  + K    ++I   +   T++ +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             + A+ +              L  +    E       +     + A     +Y   D  
Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 528

Query: 167 VTREIFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           +T  +F R     ++++               +   +   G  +D      L+   D + 
Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
             L  E E +      +    ++L   LF + G+     T+T    T + VLS      P
Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               V  +R   S+      +TL  A +  GR+  +      + TGR S      QN+P 
Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            + +                            +R   IA +G+ ++ AD + IE R++A 
Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G++  ++AF    D++  T A       ++VT  +R   K +   L            
Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 787

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  ++ + A                                +   K + 
Sbjct: 788 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 814

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  + E         +Q                             +    GR L   
Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627
           D+ ++   +        R             Q  + +I+   M+       K    ++L 
Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673
           VHDE+V E   D      +++   M +  +       WA    +PL  E    + +
Sbjct: 900 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
 gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
          Length = 913

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 202/701 (28%), Gaps = 162/701 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +T            ++  +   +          H             + 
Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ +   V  +  ++  VL     +++       TL+ +              
Sbjct: 389 ARLKPWLESAEHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSL 446

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E               A     EY   D  +T  + + 
Sbjct: 447 ALRHLGVKTI----------KYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQA 496

Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P  +            E     + + +   G  +D       +  +     +L+ E  
Sbjct: 497 LYPQVTAEKTLEYVYRAIELPTSRVLRKMERTGVLIDAEKLRLQSSEIATRLIQLESEAY 556

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 557 VLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEH 615

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N+      T      + TGR +      QN+P  +      
Sbjct: 616 R-GLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRR- 673

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G KLV AD + IE R++A ++G++  L
Sbjct: 674 ------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLL 709

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F+V P +V+ DQR + KV+                    G++ 
Sbjct: 710 RAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSS 755

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A                                      A +     +  ++  V+ 
Sbjct: 756 FGLAA------------------------------NLGITRDAAKLYIDRYFARYPGVAR 785

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             +E   + +                              +    GR L   ++      
Sbjct: 786 YMDETRVSAK--------------------------AKGYVETVFGRRLWLPEINGGNGP 819

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                    R            +Q  + D++   M+         K G  +++ VHDE++
Sbjct: 820 RRQA---AERAAINAP------MQGTAADLIKLSMIAVQNWIEESKIGTRMIMQVHDELI 870

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E PD +  +    L  LM         +PL AE      +
Sbjct: 871 LEVPDAELSDVRKRLPELMCGVAD--LKVPLVAEVGAGLNW 909


>gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100]
 gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris]
          Length = 927

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 97/705 (13%), Positives = 191/705 (27%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L             +I  +   +          HD              
Sbjct: 352 AFDTETDSLDAL----------QANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQAL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  V  +  +  ++  V++    + +  +    TL+ +           + +
Sbjct: 402 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GIALAGYA-DDTLLESFVLNSGSARHDMDS 459

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +     + +      Y   D  +T  +
Sbjct: 460 LAKRY--------LGYDTVKY----EDICGKGAKQIKFAQVSLEDATRYAAEDADITLRL 507

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L                 E  L  + + I   G CVD A     +  +        Q
Sbjct: 508 HQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 568 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 626

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
            + R   ++      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 627 LDYR-SLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 684

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 685 GRR-------------------------IRRAFVAPAGRKLIACDYSQIELRIMAHLSGD 719

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++  T A  F      V+ D+R   K +                    
Sbjct: 720 PGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------GLMY 765

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     +  ++ 
Sbjct: 766 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 795

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +      Q                                 +    GR L    +  
Sbjct: 796 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 827

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
             +          R            +Q  + DI+   M++             ++L VH
Sbjct: 828 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVSVDGWIADHAQRALMILQVH 880

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E          + +   M++  S    +PL  +      +
Sbjct: 881 DELVFEADADFVDTLLAEVTARMSAAAS--LRVPLVVDSGVGDNW 923


>gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14]
 gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14]
          Length = 920

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/700 (14%), Positives = 200/700 (28%), Gaps = 159/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET S   +          D  ++  +F  +++         +      +  + 
Sbjct: 348 KNLSLDTETTSTNAI----------DAELVGLSFAVEENKAFYVAIPAEREKALRIVNIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           K   EN  +  +  N  ++  VL    +++I   +   T++            +  + E 
Sbjct: 398 KPLYENKKILKIGQNIKYDYEVLLNY-DIEIK-GKMFDTMIAHYLIQPELHHNMDYLAEV 455

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               + +    +ELI                K       +   EY   D  +T  +   L
Sbjct: 456 --FLNYQTIHIEELIG---------PKGKNQKNMRDLNPKDVYEYAAEDADITLRLKNVL 504

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L  +   +   G C+D       +++      K ++++   
Sbjct: 505 EPKLGEVKAEHLFWEIEMPLIPVLADMERNGICLDTNALQETSKVFTERMRKYEEKIYEE 564

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +   P    + N R
Sbjct: 565 AA-EKFNISSPKQVGDILFGKMHIMEKPKKTKTGQYVTSEEVLQSIRAKNPIVENILNYR 623

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L   +N       T      + TGR S      QN+P  +   +E  
Sbjct: 624 -GMKKLLSTYVDNLPTLINKRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKE-- 680

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R C I   G     AD + IE R++A ++G++  ++
Sbjct: 681 -----------------------IRKCFIPEPGCLFFSADYSQIELRIMAHLSGDENMIE 717

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T A+ ++    +VT  QR   K                      G+   
Sbjct: 718 AFREGFDIHRATAAKIWHEEIDKVTDSQRKKAKQAN--------------FGIIYGITTY 763

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A                                     +  + +   + +   +V   
Sbjct: 764 GLAQR------------------------------MNISNSEAKDLITDYFKTFPKVQAY 793

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             +  +A  +                          N       GR     D+ ++    
Sbjct: 794 MEKAKEAARK--------------------------NGYAETIFGRRRYLADINSHN--- 824

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
            T      R            +Q    DI+   M+              ++L VHDE+  
Sbjct: 825 GTVRGFAERNAINAP------IQGSEADIIKVAMIKIWNRFRQEGIKSKMILQVHDELNF 878

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                ++     +    M +   +   +PL A+      +
Sbjct: 879 SVYPEEKEKVEQIVIQEMQNA--FHLDVPLTADAGWGNNW 916


>gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8]
          Length = 956

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
              ID ET               +   ++  +    D+        H             
Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
              +    K  LEN ++  +  +  ++  + K    ++I   +   T++ +         
Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             + A+ +              L  +    E       +     + A     +Y   D  
Sbjct: 478 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 525

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215
           +T  +F R     ++++    L   +              G  +D      L+   D + 
Sbjct: 526 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 585

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
             L  E E +      +    ++L   LF + G+     T+T    T + VLS      P
Sbjct: 586 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 642

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               V  +R   S+      +TL  A +  GR+  +      + TGR S      QN+P 
Sbjct: 643 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 700

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            + +                            +R   IA +G+ ++ AD + IE R++A 
Sbjct: 701 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 735

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G++  ++AF    D++  T A       ++VT  +R   K +   L            
Sbjct: 736 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 784

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  ++ + A                                +   K + 
Sbjct: 785 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 811

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  + E         +Q                             +    GR L   
Sbjct: 812 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 845

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627
           D+ ++   +        R             Q  + +I+   M+       K    ++L 
Sbjct: 846 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 896

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673
           VHDE+V E   D      +++   M +  +       WA    +PL  E    + +
Sbjct: 897 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 952


>gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184]
 gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184]
          Length = 920

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/702 (15%), Positives = 201/702 (28%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F  +          H             + 
Sbjct: 346 AFDTETTALDPML----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 395

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
             LK  LE+ D   V  +  ++  VL      DI ++     TL+ +             
Sbjct: 396 ARLKPWLESADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESYVVESHRTHDMDS 452

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+    K            K E       +       A     EY   D  +T ++  
Sbjct: 453 LALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHH 502

Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  +  + + +   G  +D A  H  +  +     +L+ E 
Sbjct: 503 ALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIELEGEA 562

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    +++    F +  L +   T +    T + VL    +  P    +  
Sbjct: 563 YELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 621

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+      + L   +N       T      + TGR +      QN+P  +     
Sbjct: 622 HR-GLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR 680

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G ++V AD + IE R++A ++G+   
Sbjct: 681 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 715

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F V P +V  DQR I KV+                    G++
Sbjct: 716 LRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS 761

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A        A +     +  ++  V+
Sbjct: 762 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 791

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +     ++                             +    GR L   ++     
Sbjct: 792 QYMEDTRATAKE--------------------------KGYVETVFGRRLWLPEINGGNG 825

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                     R            +Q  + D++   M+         +    +++ VHDE+
Sbjct: 826 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDEL 876

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E P+ +       L  +M         +PL AE      +
Sbjct: 877 VLEVPEGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 916


>gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1]
          Length = 959

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
              ID ET               +   ++  +    D+        H             
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
              +    K  LEN ++  +  +  ++  + K    ++I   +   T++ +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             + A+ +              L  +    E       +     + A     +Y   D  
Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 528

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215
           +T  +F R     ++++    L   +              G  +D      L+   D + 
Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
             L  E E +      +    ++L   LF + G+     T+T    T + VLS      P
Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               V  +R   S+      +TL  A +  GR+  +      + TGR S      QN+P 
Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            + +                            +R   IA +G+ ++ AD + IE R++A 
Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G++  ++AF    D++  T A       ++VT  +R   K +   L            
Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 787

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  ++ + A                                +   K + 
Sbjct: 788 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 814

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  + E         +Q                             +    GR L   
Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627
           D+ ++   +        R             Q  + +I+   M+       K    ++L 
Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673
           VHDE+V E   D      +++   M +  +       WA    +PL  E    + +
Sbjct: 900 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169]
          Length = 956

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
              ID ET               +   ++  +    D+        H             
Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
              +    K  LEN ++  +  +  ++  + K    ++I   +   T++ +         
Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             + A+ +              L  +    E       +     + A     +Y   D  
Sbjct: 478 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 525

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215
           +T  +F R     ++++    L   +              G  +D      L+   D + 
Sbjct: 526 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 585

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
             L  E E +      +    ++L   LF + G+     T+T    T + VLS      P
Sbjct: 586 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 642

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               V  +R   S+      +TL  A +  GR+  +      + TGR S      QN+P 
Sbjct: 643 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 700

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            + +                            +R   IA +G+ ++ AD + IE R++A 
Sbjct: 701 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 735

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G++  ++AF    D++  T A       ++VT  +R   K +   L            
Sbjct: 736 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 784

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  ++ + A                                +   K + 
Sbjct: 785 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 811

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  + E         +Q                             +    GR L   
Sbjct: 812 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 845

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627
           D+ ++   +        R             Q  + +I+   M+       K    ++L 
Sbjct: 846 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 896

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673
           VHDE+V E   D      +++   M +  +       WA    +PL  E    + +
Sbjct: 897 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 952


>gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1]
          Length = 959

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/716 (14%), Positives = 209/716 (29%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
              ID ET               +   ++  +    D+        H             
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
              +    K  LEN ++  +  +  ++  + K    ++I   +   T++ +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             + A+ +              L  +    E       +     + A     +Y   D  
Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 528

Query: 167 VTREIFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           +T  +F R     ++++               +   +   G  +D      L+   D + 
Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
             L  E E +      +    ++L   LF + G+     T+T    T + VLS      P
Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               V  +R   S+      +TL  A +  GR+  +      + TGR S      QN+P 
Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            + +                            +R   IA +G+ ++ AD + IE R++A 
Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G++  ++AF    D++  T A       ++VT  +R   K +   L            
Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 787

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  ++ + A                                +   K + 
Sbjct: 788 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 814

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  + E         +Q                             +    GR L   
Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627
           D+ ++   +        R             Q  + +I+   M+       K    ++L 
Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673
           VHDE+V E       N   ++   M +  +       WA    +PL  E    + +
Sbjct: 900 VHDELVFEVDTDKAHNIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73]
 gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans]
          Length = 922

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/705 (14%), Positives = 199/705 (28%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEA--- 60
             D ET +   +             ++  +F  +    +     HD    P  L      
Sbjct: 347 AFDTETDALDAMR----------ANLVGLSFAIEPGHADYLPLGHDYPGAPVQLDRVQAL 396

Query: 61  ------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
                 LE+     V  +  ++  VL+    + +  +    T++ +      ++   + +
Sbjct: 397 AALAPLLEDPAKRKVGQHGKYDLHVLRRH-GVQVHGYA-DDTMLESFVLNSTASRHDMDS 454

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +     + A      Y   D  +T  +
Sbjct: 455 LAKRY--------LGYDTVKY----EDVAGKGAKQIAFSQVAIDDATGYAAEDADITLRL 502

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L                 E  L  +   I   G CVD+A     +Q++        Q
Sbjct: 503 HRALSAQLDAEPALARVYREIEMPLVPVLTRIEANGVCVDIAELRKQSQVLSQRMLAAQQ 562

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +  +L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 563 KAVALAG-RSFNLDSPKQLQAVLFDELKLPALLKTPKGQPSTNEEALEAIADQHELPRVI 621

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L E +N + GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 622 LEYR-GLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 679

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++ +
Sbjct: 680 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSED 714

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AF  G D++  T A  F     QV+ ++R   K +                    
Sbjct: 715 PGLLRAFSQGVDVHRATAAEVFGRTLEQVSANERRAAKAINF--------------GLMY 760

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A          +     +  ++ 
Sbjct: 761 GMS------------------------------AFGLARNLGIGRGEAQDYVALYFSRYP 790

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +    + +                                 +    GR L   D+  
Sbjct: 791 AVRDFMERMREQART--------------------------QGYVETLFGRRLYLNDINA 824

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
            +  L        R            +Q  + DI+   M++        +A   ++L VH
Sbjct: 825 KQQGLR---AGAERAAINAP------MQGTAADIIKRAMVSVDTWLQDHRARALMILQVH 875

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E            +   M +       +PL  +      +
Sbjct: 876 DELVFEVDADFVEILLPEVTWRMAAAAE--LKVPLVVDSGVGDNW 918


>gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4]
 gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4]
          Length = 959

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
              ID ET               +   ++  +    D+        H             
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
              +    K  LEN ++  +  +  ++  + K    ++I   +   T++ +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             + A+ +              L  +    E       +     + A     +Y   D  
Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 528

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215
           +T  +F R     ++++    L   +              G  +D      L+   D + 
Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
             L  E E +      +    ++L   LF + G+     T+T    T + VLS      P
Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               V  +R   S+      +TL  A +  GR+  +      + TGR S      QN+P 
Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            + +                            +R   IA +G+ ++ AD + IE R++A 
Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G++  ++AF    D++  T A       ++VT  +R   K +   L            
Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 787

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  ++ + A                                +   K + 
Sbjct: 788 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 814

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  + E         +Q                             +    GR L   
Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627
           D+ ++   +        R             Q  + +I+   M+       K    ++L 
Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673
           VHDE+V E   D      +++   M +  +       WA    +PL  E    + +
Sbjct: 900 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 929

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/700 (14%), Positives = 202/700 (28%), Gaps = 161/700 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            +  D ET              A +  ++  +F +  H         D      +   L+
Sbjct: 358 EVCFDTETT----------AIDALEAELVGISFCWTAHKGYYVPFPVDKEEATALLNTLR 407

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN  +T V  N  ++  VL+    + +       T++            +  + E  
Sbjct: 408 PFFENEKITKVGQNLKYDLKVLQNY-GIKVQ-GALFDTMIAHYLINPDMRHNMDLLSETY 465

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + LI                +     A     EY   D  VT ++    +
Sbjct: 466 --LGYTPIAIESLI----------GKGKAQRSMRTVALEEVKEYAVEDADVTWQLKDVFK 513

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   +   G  +DVA     ++ +D E  +L+  +    
Sbjct: 514 AELPKVNAQKVYADLEMPLLKVLAVMEREGVTLDVAYLKEYSKTLDAEIAQLEATIAEQA 573

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH-LEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L   LF +  +      T+T    T + VL+           +     
Sbjct: 574 GTP-FNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVADIL-EWR 631

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           +  +     ++ L   +N       T      + TGR S      QN+P  +        
Sbjct: 632 QVQKLKSTYVDALPLEVNPRTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTERG----- 686

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   IA  +   L+ AD + IE R++A ++ E   ++
Sbjct: 687 --------------------QRVRKAFIARNDDYILLSADYSQIELRIIAALSEEHNMIE 726

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           +F  GED++  T A+ FNV    VT++QR+  K +   + Y              G++  
Sbjct: 727 SFLHGEDIHRATAAKVFNVPLEAVTREQRSHAKTVNFGIIY--------------GVSAF 772

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +                                     +  + +   +   +  +   
Sbjct: 773 GLSAQTD------------------------------LSRSQSKELIDTYYATYPNLRNY 802

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +      E+G                             GR     D+ +    +
Sbjct: 803 ---IQKQIHFAQEHGYVETVL-----------------------GRRRYLPDIHSRNQVV 836

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                +               +Q  + DI+   M+              ++L VHDE+V 
Sbjct: 837 RGAAERN---------AVNAPIQGSAADIIKIAMIRIYDLLQAQQLQTRMLLQVHDELVF 887

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + P T+      ++  +M S  + A  +PL A+      +
Sbjct: 888 DVPKTELEIVKPLIKEVMESAFTLA--VPLVADLGVGNNW 925


>gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 959

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
              ID ET               +   ++  +    D+        H             
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
              +    K  LEN ++  +  +  ++  + K    ++I   +   T++ +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             + A+ +              L  +    E       +     + A     +Y   D  
Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 528

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215
           +T  +F R     ++++    L   +              G  +D      L+   D + 
Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
             L  E E +      +    ++L   LF + G+     T+T    T + VLS      P
Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               V  +R   S+      +TL  A +  GR+  +      + TGR S      QN+P 
Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            + +                            +R   IA +G+ ++ AD + IE R++A 
Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G++  ++AF    D++  T A       ++VT  +R   K +   L            
Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 787

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  ++ + A                                +   K + 
Sbjct: 788 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 814

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  + E         +Q                             +    GR L   
Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627
           D+ ++   +        R             Q  + +I+   M+       K    ++L 
Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673
           VHDE+V E   D      +++   M +  +       WA    +PL  E    + +
Sbjct: 900 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72]
 gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72]
          Length = 918

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/706 (15%), Positives = 197/706 (27%), Gaps = 170/706 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           +  D ET S   ++            ++  +F             H             +
Sbjct: 343 VAFDTETTSLDPMS----------ARLVGMSFALAQGEAAYLPLAHRGTDVPQQLPLDEV 392

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSALK 110
              LK  LE+     +  N  ++  VL       I +      TL+ +       P  + 
Sbjct: 393 LARLKPWLESDRHAKLGQNLKYDAHVLLNH---GIRLGGITHDTLLESYVLESDKPHDMD 449

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           ++ +           G   I              +       A      Y   D  VT  
Sbjct: 450 SLAKRH--------LGLTTIPY----TEVCGKGAKQIGFDEVALDCAAAYAAEDADVTLR 497

Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L P               E     +   +   G  +D  L     + +      L+
Sbjct: 498 LHETLWPQVEALPRLAALYRDVELPTLQVLFEMERTGVLIDPFLLAQHGEELGRRLLGLE 557

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQ 275
            E   L      +    ++L   LF +  L +   T     +T + VL+   +  P    
Sbjct: 558 AEAHVLAGQP-FNLGSPKQLGEILFGKLALPVLKKTATGQPSTDEDVLTQLAEDYPLPKL 616

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   ++      + L   +N   GR+        A  TGR +      QN+P  + 
Sbjct: 617 LLEHR-SLAKLKSTYADKLPRMVNPKTGRVHTCFSQATA-VTGRLASTDPNLQNIPIRTA 674

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R+  IA     +V AD + IE R++A ++G
Sbjct: 675 EGRR-------------------------IRAAFIAPRDHVIVSADYSQIELRIMAHLSG 709

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L+AF  GED++  T A  F VAP++V+ +QR                         
Sbjct: 710 DARLLEAFAEGEDVHRATAAEVFGVAPSEVSSEQRRYA--------------KVINFGLI 755

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  A        A +     +  ++
Sbjct: 756 YGMS------------------------------AHGLAKNLGIERGAAQAWIDRYFARY 785

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V++    +    +                              +    GR L   D+ 
Sbjct: 786 PGVADYMERIKAEAKD--------------------------KGYVETVFGRRLHLPDIR 819

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
             ++          R            +Q  + D++ + M+  +           +VL V
Sbjct: 820 AQQAGRRQA---AERAAINAP------MQGTAADLIKKAMIAVSGWLRASGLKSRLVLQV 870

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E P  +     + L  LM      A  +PL  E      +
Sbjct: 871 HDELVLEVPVAEVETLRAALPGLMGGVA--ALSVPLLVEVGVGNNW 914


>gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
 gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004]
          Length = 927

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 97/705 (13%), Positives = 191/705 (27%), Gaps = 169/705 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L             +I  +   +          HD              
Sbjct: 352 AFDTETDSLDAL----------QANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQAL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  V  +  +  ++  V++    + +  +    TL+ +           + +
Sbjct: 402 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GIALAGYA-DDTLLESFVLNSGSARHDMDS 459

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +     + +      Y   D  +T  +
Sbjct: 460 LAKRY--------LGYDTVKY----EDICGKGAKQIKFAQVSLEDATRYAAEDADITLRL 507

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L                 E  L  + + I   G CVD A     +  +        Q
Sbjct: 508 HQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 568 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 626

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
            + R   ++      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 627 LDYR-SLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 684

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 685 GRR-------------------------IRRAFVAPAGRKLIACDYSQIELRIMAHLSGD 719

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++  T A  F      V+ D+R   K +                    
Sbjct: 720 PGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------GLMY 765

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     +  ++ 
Sbjct: 766 GMS------------------------------AFGLARQLGIGRGEAQDYIALYFSRYP 795

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +      Q                                 +    GR L    +  
Sbjct: 796 GVRDFMETTRQQARD--------------------------KGYVETVFGRRLYLDFI-- 827

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
             +          R            +Q  + DI+   M++             ++L VH
Sbjct: 828 -NAGSQGQRAGAERAAINAP------MQGTAADIIKRAMVSVDGWIADHAQRALMILQVH 880

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E          + +   M++  S    +PL  +      +
Sbjct: 881 DELVFEADADFVDTLLAEVTARMSAAAS--LRVPLVVDSGVGDNW 923


>gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581]
 gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581]
          Length = 922

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/697 (14%), Positives = 201/697 (28%), Gaps = 153/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S           Y E   ++      +          HD            + 
Sbjct: 347 CFDLETTSL---------SYME-ADIVGVGLALEPGEAAYIPLAHDYLDAPEQLDRQAVL 396

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           + L     +     +  N  ++ +VL      ++       T++ +      +       
Sbjct: 397 EALAPLWADAGKAKIGQNLKYDISVLARH-GHEVA-GPLHDTMLESYVLDSTATRHDMDS 454

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK   +K    ++                +    ++ A      Y   DV +T  + +
Sbjct: 455 LALKYLGEKTVSFED----------IAGKGAKQLTFNQIALEQAAPYACEDVDITLRLHR 504

Query: 174 RLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P    +           + L  +   +   G  +D    H  ++ +     +L+Q  
Sbjct: 505 ELRPRVEGQGRLAEVLDNLERPLVRVLSRMERNGVALDPERLHEQSRELGERIRELEQRA 564

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L   LF E  + +   T     +T + VL       P    +  
Sbjct: 565 HELAG-REFNLGSPKQLGEILFEEQKIPVIKKTPKGAPSTAEAVLEELALDYPLPKVIME 623

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L + ++   GRL  +      + TGR S      QN+P  +    
Sbjct: 624 HR-GFSKLRSTYTDKLPKLVDPTTGRLHTSYHQAV-TATGRLSSSDPNLQNIPIRTEQGR 681

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   +A  G +LV AD + IE R++A ++G++ 
Sbjct: 682 R-------------------------IRQAFVARPGYRLVAADYSQIELRIMAHLSGDKG 716

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G D++  T A  F VA  +V+ +QR   K +   L Y   A           L
Sbjct: 717 LLDAFAQGRDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSA-----WGLGRQL 771

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           ++      +  +   + +     +   ++    E    +   G      +   + ++ R 
Sbjct: 772 HIERNQAQIYIDRYFDRYPGVARYMERIRAQAAEDGYVETVFGRRLHLPEIHSQNRNRR- 830

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   +        G A    KR  + +     D                       
Sbjct: 831 ----QGAERTAINAPMQGTAADIIKRAMIDVDGWLADG---------------------- 864

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                                         DI  + M         +V+ VHDE+V E  
Sbjct: 865 ------------------------------DI--DAM---------MVMQVHDELVFEVA 883

Query: 638 DTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +++       +   M +       + L  E      +
Sbjct: 884 ESEVDAFMDQVKTRMENAAE--LDVALTVEAESGANW 918


>gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1]
          Length = 959

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/716 (14%), Positives = 210/716 (29%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
              ID ET               +   ++  +    D+        H             
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
              +    K  LEN ++  +  +  ++  + K    ++I   +   T++ +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             + A+ +              L  +    E       +     + A  +   Y   D  
Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDVASHYACEDAD 528

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215
           +T  +F R     ++++    L   +              G  +D      L+   D + 
Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
             L  E E +      +    ++L   LF + G+     T+T    T + VLS      P
Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               V  +R   S+      +TL  A +  GR+  +      + TGR S      QN+P 
Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            + +                            +R   IA +G+ ++ AD + IE R++A 
Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G++  ++AF    D++  T A       ++VT  +R   K +   L            
Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 787

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  ++ + A                                +   K + 
Sbjct: 788 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 814

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  + E         +Q                             +    GR L   
Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627
           D+ ++   +        R             Q  + +I+   M+       K    ++L 
Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673
           VHDE+V E   D      +++   M +  +       WA    +PL  E    + +
Sbjct: 900 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
 gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910]
          Length = 944

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/700 (15%), Positives = 218/700 (31%), Gaps = 159/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             +  D ET S  +L          +  ++  +F +            D        ++ 
Sbjct: 372 KVVCFDTETTSLNEL----------EAELVGMSFSYKKGLAYYIPLSEDRAEVLQTLEIF 421

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   E  D+  VAHN  F+  VLK   ++ +       T++            +  + E 
Sbjct: 422 RPFFEKEDLLKVAHNLKFDYKVLKQY-DITVK-GAMFDTMIAHYLLNPDGRHGMDYLSEV 479

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               + K    + +I +            +         R   +Y   D  VT ++++  
Sbjct: 480 Y--LNYKPVSIETIIGK---------KGKKQGNFRDADLRTQTDYAAEDADVTFQLYELF 528

Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P              E  L  +   +   G  +D       +  ++ +   L+ ++  L
Sbjct: 529 APQLKKENLEELFYNIEMPLMEVLAKMELSGISLDEKWLAQESVDLENDLKGLEAKIFEL 588

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           +     +     +L   LF +  L  +   T+T    T + VL            +   R
Sbjct: 589 SG-EEFNMNSPRQLGEILFEKMQLDPKAKKTKTGQYATSEDVLQKLSSKHEIIKHILEYR 647

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L   ++ D     T      + TGR +      QN+P  +       
Sbjct: 648 -TYQKLKSTYVDALPSQIDKDDNRVHTNFSQTTAATGRLASVNPNLQNIPIRTLRG---- 702

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   ++ EGKK++ AD + IE R++A ++GE+  +K
Sbjct: 703 ---------------------QQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENMIK 741

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ GED++ +T A+ F +  A+V+K QR+  K +                    G    
Sbjct: 742 AFQDGEDIHASTAAKLFKIPLAEVSKTQRSQAKTVN--------------FGIIYG---- 783

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                     +     A +     T  +++ +A+ + + ++ E 
Sbjct: 784 --------------------------QGAFALAEQTGLSRTEAKQMIEAYFETYPKLKEY 817

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             E      Q                             +    GR    +D+ +N   +
Sbjct: 818 MAEQVNKARQ--------------------------LGYVETILGRKRHLKDINSNNFVV 851

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                +               VQ  + DI+   M+   +          ++L VHDE+V 
Sbjct: 852 RGHAERN---------AVNAPVQGSAADIVKIAMIKIDRELEEQQLKTKMLLQVHDELVF 902

Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           E P  +  +AS L    M +       +PL  E      +
Sbjct: 903 EAPADEIESASHLIRTEMENALK--TQVPLLVEIGVGDNW 940


>gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1]
 gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1]
          Length = 917

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/703 (15%), Positives = 207/703 (29%), Gaps = 166/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +   +          H             + 
Sbjct: 343 SFDTETTSLDPMV----------AQIVGLSLCTEPGSAAYVPVAHRGPDAPEQLPRDEVL 392

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
             LK  LEN     V  +  ++  VL      DI ++     TL+ +             
Sbjct: 393 AKLKPWLENPARKKVGQHLKYDAQVLANY---DIALNGVEHDTLLESYVLESHRTHDMDS 449

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+    K            K E       +       A  +   Y   D  +T ++ +
Sbjct: 450 LALRHLGVKTI----------KYEDVAGKGAQQIGFDEVALDVAAAYAAEDADITLQLHR 499

Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            + P            +  E  + ++ + +   G  +D       ++ + V   +L++E 
Sbjct: 500 VMYPQVEREAGLKRVYTEIELPVSFVLRKMERTGVLIDSGRLEAQSREIAVRLVELEREA 559

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
            +L  G   +    +++    F +  L +   T +    T + VL    +  P    +  
Sbjct: 560 YALAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 618

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   S+      + L   +N S GR+        A  TGR +      QN+P  +    
Sbjct: 619 HR-GLSKLKSTYTDKLPRMINASTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGR 676

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA+ G K+V AD + IE R++A ++G++ 
Sbjct: 677 R-------------------------IREAFIAAPGCKIVSADYSQIELRIMAHISGDES 711

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L+AF  GED++  T A  F V P +V+ DQR I KV+                    G+
Sbjct: 712 LLRAFSQGEDIHRATAAEVFGVTPLEVSTDQRRIAKVINF--------------GLIYGM 757

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  A        A +     +  ++  V
Sbjct: 758 S------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGV 787

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +        + +                              +    GR L   ++    
Sbjct: 788 ANYMETTRASAK--------------------------AQGYVETVFGRRLWLPEINGGN 821

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDE 631
                      R            +Q  + D++   M+              +++ VHDE
Sbjct: 822 GPRRQA---AERAAINAP------MQGTAADLIKLSMIAVDGWLERDGLRSRMIMQVHDE 872

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E PD +       L  +M+        +PL AE      +
Sbjct: 873 LVLEVPDAELALVREKLPEMMSGVAK--LKVPLVAEVGAGTNW 913


>gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
 gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745]
          Length = 915

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 120/708 (16%), Positives = 210/708 (29%), Gaps = 170/708 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQ 55
           + +D ET S   +T            ++  A              H           + +
Sbjct: 334 IALDVETTSTDPMT----------ARLVGIALATSGQRSFYVPVNHANDDEQLDADEVRE 383

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            L   L + +  + AH+  ++  VL+              T++ A   G  + L     A
Sbjct: 384 ALSPLLADPNTVVYAHHGKYDALVLERAG--YPRPRIAFDTMIAAYLLGENA-LDLKSLA 440

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +M E   LI                        +  G+Y   DV  T  + + L
Sbjct: 441 FNRLGMEMTEITTLI----------GRGRNQLTMDLTDVQAAGDYACADVEATYRLVEVL 490

Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +P    +Q           L  +   +   G  VDV L   L++ +  +  +L++E+  L
Sbjct: 491 QPDLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRDLSRQLTGQLAELEREIYGL 550

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282
                 +     +L T LF E GL     T+   +  Q VL + +   P    +   R  
Sbjct: 551 AKH-EFNINSTRQLATVLFDELGLPAGRRTKTGYSVSQEVLENLRHAHPIVDCILEYRQL 609

Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             +     ++ L E +N + GR+  +     A+ TGR S      QN+P  +        
Sbjct: 610 L-KLKSTYVDALPEQVNPETGRIHTSFNQTIAA-TGRLSSTDPNLQNIPVRTELGR---- 663

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA--SEGK-------KLVVADLAGIEARVLAWM 392
                                 VR   IA    G         L+ AD + IE R++A +
Sbjct: 664 ---------------------SVRRAFIADNRPGYRPFDEEAVLLSADYSQIELRLMAHL 702

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  + AF  G+D++  T A  F V   QVT D R + K +                 
Sbjct: 703 SGDERLVHAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVN--------------FG 748

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G+                                   A +        +R    +  
Sbjct: 749 IMYGM------------------------------QAYGLARDTGMSRQDAQRFIDRYMA 778

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +   V      L +   Q ++ G                             GR     D
Sbjct: 779 RLPGVRAF---LERTKRQALQQGYVTSM-----------------------FGRRRYTPD 812

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVL 626
           + ++            R             Q  + DI+   M+              ++L
Sbjct: 813 IDSSNV---NRRLAAERMAINMPL------QGSAADIMKIAMIRVHDEMRRRGLRSRMLL 863

Query: 627 TVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE++ E P ++    + L   +M    +    +PL  E      +
Sbjct: 864 QVHDELLFEVPRSELRTMADLAVDVMEKVVT--LNVPLVVEVAAGANW 909


>gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18]
 gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18]
          Length = 920

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/698 (14%), Positives = 201/698 (28%), Gaps = 159/698 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           + ID ET S   ++            ++  +F  ++          +      + Q+ K 
Sbjct: 350 VSIDTETTSTDAIS----------AELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKP 399

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117
             E+  +  +  N  ++  VL     + +   +   T++            +  + E L 
Sbjct: 400 LYESDKIMKIGQNIKYDYEVLTRY-GVTLQ-GKMFDTMIAHYLIQPELHHNMDYMAETL- 456

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             S +    +EL+              + K     +     EY   D  +T  +   LEP
Sbjct: 457 -LSYQTIHIEELLG---------PKGKKQKNMRDLSPTDIYEYAAEDADITLRLKNVLEP 506

Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +   +   G C+D       ++I      + +QE+     
Sbjct: 507 RLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIYKEAG 566

Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    +++   LF +  +      T+T    T + VL S +  +P    + N R  
Sbjct: 567 -EEFNISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIVRNILNYR-G 624

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +     ++ L + +N       T      + TGR S      QN+P  +   +E    
Sbjct: 625 MKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKE---- 680

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R C I  EG     AD + IE R++A ++ ++  ++AF
Sbjct: 681 ---------------------IRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMMEAF 719

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A+ ++V   +VT  QR   K     +                G+     
Sbjct: 720 REGHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGII--------------YGITTYGL 765

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A  +                                     + + + + +   +V     
Sbjct: 766 AQRMDI------------------------------PNGEAKELIEGYFRTFPKVQAYME 795

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +                                       R     D+ +  +   T
Sbjct: 796 HAKEVAR--------------------------AKGYAETLFHRRRYLADINSRNA---T 826

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q    DI+   M+   +          ++L VHDE+    
Sbjct: 827 VRGFAERNAINAP------IQGTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSV 880

Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              +      +    M +   +   +PL A+    K +
Sbjct: 881 FPEEREQVERIVIEEMQNA--YPLNVPLIADAGWGKNW 916


>gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7]
          Length = 956

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/716 (14%), Positives = 207/716 (28%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
              ID ET               +   ++  +    D+        H             
Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
              +    K  LEN ++  +  +  ++  + K    ++I   +   T++ +         
Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             + A+ +              L  +    E       +     + A     +Y   D  
Sbjct: 478 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 525

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215
           +T  +F R     ++++    L   +              G  +D      L+   D + 
Sbjct: 526 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 585

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
             L  E E +      +    ++L   LF + G+     T+T    T + VLS      P
Sbjct: 586 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 642

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               V  +R   S+      +TL  A +  GR+  +      + TGR S      QN+P 
Sbjct: 643 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 700

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            + +                            +R   IA +G+ ++ AD + IE R++A 
Sbjct: 701 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 735

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G++  ++AF    D++  T A       ++VT  +R   K +                
Sbjct: 736 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF-------------- 781

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  +  + A                                +   K + 
Sbjct: 782 GLLYGMSAFGLAKQIGVDRAV------------------------------AQDYIKRYF 811

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  + E         +Q                             +    GR L   
Sbjct: 812 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 845

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627
           D+ ++   +        R             Q  + +I+   M+       K    ++L 
Sbjct: 846 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 896

Query: 628 VHDEIVCETPDTDEFNASMLYHL-MTSNPS-------WAKG--LPLKAEGYESKRY 673
           VHDE+V E       +   L  + M +  +       WA    +PL  E    + +
Sbjct: 897 VHDELVFEVDTDKAHDIGNLIKIAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 952


>gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315]
 gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315]
          Length = 917

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/702 (15%), Positives = 204/702 (29%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL------ 57
             D ET +   +             ++  +F  +          H  P MP+ L      
Sbjct: 343 AFDTETTALDPML----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 392

Query: 58  ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
              K  LE+ D   V  +  ++  VL      DI ++     TL+ +             
Sbjct: 393 TRLKPWLESADRKKVGQHLKYDAQVLANY---DIELNGIEHDTLLESYVVESHRTHDMDS 449

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+    K            K E       +       A     EY   D  +T ++  
Sbjct: 450 LALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHH 499

Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  +  + + +   G  +D A  H  +  +     +L+ + 
Sbjct: 500 ALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIELEGQA 559

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    +++    F +  L +   T +    T + VL    +  P    +  
Sbjct: 560 YELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 618

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+      + L   +N       T      + TGR +      QN+P  +     
Sbjct: 619 HR-GLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR 677

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA+ G ++V AD + IE R++A ++G+   
Sbjct: 678 -------------------------IREAFIAAPGHRIVSADYSQIELRIMAHISGDASL 712

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F V P +V  DQR I KV+                    G++
Sbjct: 713 LRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS 758

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A        A +     +  ++  V+
Sbjct: 759 ------------------------------AFGLASNLGITRDAAKLYIDRYFARYPGVA 788

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   +     ++                             +    GR L   ++     
Sbjct: 789 QYMEDTRATAKE--------------------------KGYVETVFGRRLWLPEINGGNG 822

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEI 632
                     R            +Q  + D++   M+         +    +++ VHDE+
Sbjct: 823 PRRQA---AERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDEL 873

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E P+ +       L  +M         +PL AE      +
Sbjct: 874 VLEVPEGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp]
 gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp]
          Length = 931

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/704 (15%), Positives = 198/704 (28%), Gaps = 162/704 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET S            A+   ++  +F             H             +
Sbjct: 352 IAFDSETTS----------IDAQQAQLVGLSFAVKAGEAAYVPLAHSYMGVPQQLDRDAV 401

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SAL 109
            + LK  LE+     V  ++ ++  VL       I +      T++ +           +
Sbjct: 402 LKALKPILEDPAKAKVGQHAKYDINVLANAST-PIAVQGVAFDTMLESYVLDSTATRHDM 460

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++             G   I      E       +     + A    G Y   D  VT 
Sbjct: 461 DSLALKY--------LGHSTIRF----EDIAGRGAKQLTFDQIALEQAGPYAAEDADVTL 508

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + + L                 E  L  +   I   G  VD  L    +  +  +  +L
Sbjct: 509 RLHQELWGRLEAVPSLAKVLREIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKLVEL 568

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274
           +++   +      +    ++L   L+ + G  +   T     +T + VL+   +   +  
Sbjct: 569 ERKAFEIAG-EEFNLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDFELP 627

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           +V       S+      + L E +N   GR+  +     A+ TGR S      QN+P  +
Sbjct: 628 KVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRT 686

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A +G K++ AD + IE R++A +A
Sbjct: 687 AEGRR-------------------------IRQAFVAPKGYKMMAADYSQIELRIMAHLA 721

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L AF    D++  T A  F VA  +VT DQR   K +   L Y   A        
Sbjct: 722 KDEGLLDAFRHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMSA-----FGL 776

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              +++         +     +    ++    +    E    +   G          R  
Sbjct: 777 AKQIDVERKEAQAYIDRYFARYPGVLSYMERTRAQAAEQGYVETVFGR---------RLY 827

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              +      + +  E+                                           
Sbjct: 828 LPEIHAQNQAMRKGAERAA----------------------------------------- 846

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAV---SRDILAEGMMNATKAGYDIVLTVHD 630
             N     T    + R         ++ +Q     +R IL                 VHD
Sbjct: 847 -INAPMQGTAADIIKRAMI----AVDDWLQGSGIDARIIL----------------QVHD 885

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E  +       + L  LM         +PL  E      +
Sbjct: 886 ELVLEVREDLLEEVGAQLKALMGGAAQ--LDVPLLVEVGVGANW 927


>gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118]
 gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118]
          Length = 957

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/702 (15%), Positives = 209/702 (29%), Gaps = 155/702 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
             + +D ET S  ++             ++  +F             H            
Sbjct: 381 DLVALDTETTSLDEMR----------AQIVGISFSVTPGEAAYIPLAHAYPDAPAQLPLA 430

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109
            +   LK  L++     +  +  ++R V      +++  +    T++ +    +  P  L
Sbjct: 431 DVLAKLKPWLQDASHKKLGQHVKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVTKPHGL 488

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            ++ E              L       E             +       +Y   D  +T 
Sbjct: 489 ASLAERH------------LGRSGISFEDLCGKGANQICFDQVDIAQAAQYSCEDSDMTL 536

Query: 170 EIFKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           ++ + L PL     +L ++             I   G  +D       +  +     +L+
Sbjct: 537 DVHRALWPLLQANDKLRFIYELEIASSEALYRIERNGVLIDGPTLAVQSHELGQRILQLE 596

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           +E   L      +    +++    F + GL +   T     +T   VL    +  P   +
Sbjct: 597 KEAHELAGQP-FNLSSPKQIAEIFFTKLGLPVVKKTPTGSPSTDDEVLQKLAEDYPLPAK 655

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   ++      + L +  +   GR+        A  TGR S      QN+P  + 
Sbjct: 656 ILEHR-GLAKLKGTYTDKLAQLAHPRTGRVHTHYAQAIA-VTGRLSSLEPNLQNIPVRTP 713

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR   +A  G  +  AD + IE R++A ++G
Sbjct: 714 EGRR-------------------------VREAFVAPPGSVIASADYSQIELRIMAHISG 748

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L AF  G D++  T +  F V  AQVT +QR   KV+   L Y   A         
Sbjct: 749 DAALLLAFHDGIDVHRATASEIFGVDRAQVTSEQRRYAKVINFGLIYGMSA-----YGLA 803

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L+++  A         + +   +N+    +         +   G          R   
Sbjct: 804 KALSIDNTAAKNYIERYFDRYPGVKNYMEHTRALAKRQGYVETVFGR---------RLYL 854

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             ++                                            P+G        G
Sbjct: 855 PEINS-------------------------------------------PNGPRRS----G 867

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
             R+ +N   +          KL+   VQ          +++  K    +++ VHDE+V 
Sbjct: 868 AERAAINAPMQG---TAADLIKLSMVKVQ---------QVIDEEKRATKMIMQVHDELVF 915

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P+++       +  LM         +PL AE      + K
Sbjct: 916 EVPESEIDWVRHEVPRLMAGVAH--LKVPLLAEVGVGANWDK 955


>gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80]
 gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80]
          Length = 525

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/641 (15%), Positives = 190/641 (29%), Gaps = 144/641 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEA 115
           LK  LE+     V  N  ++ +V+     +++   R   T++ +               A
Sbjct: 1   LKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLA 58

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L+                   E            ++ A     +Y   D  VT  + +R+
Sbjct: 59  LRFLQHS----------CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRI 108

Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            PL  ++             L  +   I   G  +D  L    +Q + +   +L+Q    
Sbjct: 109 HPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYE 168

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           L      +    ++L+T LF +  L         T +T + VL       P    +   R
Sbjct: 169 LAGQP-FNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEYR 227

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L + +N       T      + TGR S      QN+P  +       
Sbjct: 228 -GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR-- 284

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   +A  G K++  D + IE R++A ++G+Q  L 
Sbjct: 285 -----------------------IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLD 321

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A    V   QV+ +QR   K +                    G++  
Sbjct: 322 AFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYGMS-- 365

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A +        +     + +++  V + 
Sbjct: 366 ----------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPGVMQY 397

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             +      Q                             +    GR L   ++ +  +  
Sbjct: 398 MEDTRSRAAQ--------------------------LGYVETIFGRRLHLPEITSRNAMR 431

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIV 633
               +   R            +Q  + DI+ + M+   +           +++ VHDE+V
Sbjct: 432 R---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELV 482

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  ++        +  LM S    A  +PL AE      +
Sbjct: 483 FEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 521


>gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703]
 gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703]
          Length = 931

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/698 (15%), Positives = 199/698 (28%), Gaps = 154/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   ++            ++  +F  +          HD            + 
Sbjct: 355 AFDTETDSLDTISTT----------LVGVSFAINAGEAAYLPLGHDYLDAPEQLDRDKVL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
            +LK  LE+  V  +  N  F++ V+     + +       T++ +           + +
Sbjct: 405 ALLKPVLEDASVLKIGQNLKFDKGVMARY-GITLRGIA-FDTMLESYVLDSVAGRHDMDS 462

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++        Y   D  VT  +
Sbjct: 463 LSERY------------LNHKTITFEEIAGKGKNQLTFNQIPLEQAAVYAAEDADVTLRL 510

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L                 +  L  +   +  +G  +D A+    ++ +     +L+ 
Sbjct: 511 HQVLSEKLNKEPSLFQVFQDIDMPLVPILSRMERQGVLIDTAILAEHSKELTQRLAELEV 570

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
               L    V +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 571 RAHELAG-EVFNLSSTKQLQAILYEKLQLPVTKKTPKGAPSTNEEVLAELALDYPLPKVI 629

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N   +   T      + TGR S      QN+P  +   
Sbjct: 630 LEYR-GLAKLKSTYTDKLPMMINPLTKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEG 688

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA EG  +V AD + IE R++A ++ + 
Sbjct: 689 RR-------------------------IRQAFIAPEGYCIVAADYSQIELRIMAHLSCDA 723

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF  G D++  T A  F +   +VT +QR   K +   L Y   A        +  
Sbjct: 724 GLLKAFSDGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIYGMSA-----FGLSRQ 778

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +         N   E +   +++    ++   E        G          R   SR
Sbjct: 779 LGIGRNEAQKYMNLYFERYPGVQHYMEQTRQQAAEQGYVATLDGRRLYLPDIHSRNAISR 838

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +A       G A    K+    +      +   ++                
Sbjct: 839 -----KAAERAAINAPMQGTAADIIKKAMASIDAWLLSQEEPLI---------------- 877

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                   I+Q                        VHDE+V E 
Sbjct: 878 ----------------------NMIMQ------------------------VHDELVFEV 891

Query: 637 PDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++      + +  LM S       +PL+ +    K +
Sbjct: 892 HESVLEGAKAKIKALMESCMQ--LNVPLQVDVGSGKNW 927


>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
 gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
          Length = 914

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/695 (16%), Positives = 202/695 (29%), Gaps = 150/695 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            ID ET S              +  ++  +   +          H             + 
Sbjct: 340 AIDTETTSLD----------VMNAKLVGISLSIEPGHAAYIPLAHHSMEQSEQLPLQSVL 389

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LEN     V  N  ++  VL     + +       TL+ +              
Sbjct: 390 DKLKPWLENPKKHKVGQNLKYDSHVLANY-GIRLQGI-VHDTLLESYVLESHRRHDMDSL 447

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +    K                              A  +   Y   D  VT ++ + 
Sbjct: 448 SERFLDYKPVS----------YTDICGKGASQIGFDEIAIDVATHYAAEDADVTLQLHQS 497

Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +                 + Q +   G  +DV   +  ++ + V+   L +   
Sbjct: 498 MWPRLKENDGLRFIYEKIEIPTSIVLQKMERNGVLIDVDKLNVQSRELGVKMDSLQENAY 557

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            +T G   +    ++L   LF +  L +   T +    T + VL    +  P    + + 
Sbjct: 558 -VTAGQPFNLNSPKQLGELLFDKLKLPMIKKTPSGAPSTSEEVLEKLAEDFPLPKIILDY 616

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N +     T      + TGR +      QN+P  S      
Sbjct: 617 R-GMSKLKTTYTDKLPRMVNPETGRVHTNYAQAVAVTGRLASNDPNLQNIPIRSEEGRR- 674

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IAS G K++ AD + IE R++A ++ +   L
Sbjct: 675 ------------------------IREAFIASPGNKIISADYSQIELRIMAHLSDDASLL 710

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF  G+D++  T +  F++ P +VT DQR   KV+   L Y   A         + L +
Sbjct: 711 KAFHDGQDVHRATASEIFDITPLEVTSDQRRYAKVINFGLIYGMSA-----FGVASNLGI 765

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +     +    ++   E    +   G                   
Sbjct: 766 SRTDAKNYIDRYFERYPGVARYMDETRQLAREQGYVETVFGR-----------------R 808

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           LW                                      +  P+G      +     + 
Sbjct: 809 LW-----------------------------------LPEINSPNGPRRQAAERAAINAP 833

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
           +  T   +        KL+   VQ    D      +   K    +++ VHDE+V + P+ 
Sbjct: 834 MQGTAADII-------KLSMIAVQ----DW-----LEKEKLDSKLIMQVHDELVLDVPEK 877

Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +       L  LM         +PL AE      +
Sbjct: 878 ELVLVREKLPELMAQVAR--LKVPLIAEVGVGDNW 910


>gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8]
 gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8]
          Length = 905

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/703 (15%), Positives = 205/703 (29%), Gaps = 166/703 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VM 53
           + +D ET S  ++             ++  +              H             +
Sbjct: 332 VAVDTETTSLDEM----------QARMVGMSLAVSPGVACYIPVAHRGPDNAPQLPKAEV 381

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111
              LK  LE+     + H++ ++  V      + +       T++ A          L  
Sbjct: 382 LARLKPWLEDATRAKLLHHAKYDAHVFAN-EGIKLAGIT-EDTMLQAYVLESHRGVGLND 439

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L       E       +       A    G Y   D   T ++
Sbjct: 440 LAQRY------------LGRSGVSYEDLCGKGAKQIGFDEVAVDKAGHYAAEDSDFTLQL 487

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L P+ + +           ++  +  T+   G  VD A     +  +  E  +L+Q+
Sbjct: 488 HQVLRPMVAADEGLNRIYLLEMQVSEVLTTVERNGVKVDAAELGRQSHKLGQEMLQLEQK 547

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
              L      +    ++L   LF    L +   T     +T + VLS   +  P    + 
Sbjct: 548 AYELAGQP-FNLNSPKQLGEILFGRMQLPVVRKTASGAPSTDEEVLSKLAQDYPLPQVLL 606

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R   S+      + L   +N +     T     A  TGR +      QN+P  + +  
Sbjct: 607 EYR-GLSKLKSTYTDKLPRMINPNTGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGR 665

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   IA +G  L+ AD + IE R++A ++ +  
Sbjct: 666 R-------------------------VREAFIAEQG-MLLSADYSQIELRIMAHVSDDAN 699

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             +AFE GED++  T +  F V+   V+ +QR   K +                    G+
Sbjct: 700 LQRAFEAGEDIHRATASEVFGVSLEDVSTEQRRAAKAINF--------------GLIYGM 745

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +                                 A        A +     +  ++  V
Sbjct: 746 GVFGL------------------------------ASNLGITRDAAQAYIDRYFARYPGV 775

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +   ++  +   +                             +    GR L   ++   R
Sbjct: 776 AMYMDDTRRRARE--------------------------QGYVETVFGRRLQLPEI---R 806

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
                  +   R            +Q  + D++   M+         K    +++ VHDE
Sbjct: 807 GASGPRRQGAERAAINAP------MQGTAADLIKMAMIAVQDWLEAEKLQTRMIMQVHDE 860

Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E PD +       L  LM +  +    +PL AE    K +
Sbjct: 861 LVLEAPDAELELVKEALPRLMCNVAT--LRVPLVAEVGMGKNW 901


>gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152]
 gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152]
          Length = 945

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 95/700 (13%), Positives = 199/700 (28%), Gaps = 162/700 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           +  D ET     L             +I  AF ++           +      + +  + 
Sbjct: 374 VCFDTETTGLKALEV----------ELIGIAFSYEIGKGYYVSFPENQEETKAILEEFRP 423

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP--SALKAVGEAL 116
             E+  +  V HN  ++  VL      ++P+  +   T++            +  + E  
Sbjct: 424 FFESEMIEKVGHNLKYDIKVLSNY---NMPVKGKLFDTMIAHYLINPDMRHNMDVLAETY 480

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              +       ELI +                      +   EY   D  +T ++ +   
Sbjct: 481 --LNYHPVSITELIGK---------KGKNQLSMRVVPIKDQTEYAVEDADITYQLKQHFT 529

Query: 177 PLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   +   G  VD      L+  +  +  +L++E+    
Sbjct: 530 KELDSGNVTELFNKVELPLVSVLTAMEIEGINVDTNFLKQLSTALTDDINRLEKEIYEQA 589

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L   LF    L      T+     T + +LS   K       +   R 
Sbjct: 590 G-EEFNIASPKQLGIVLFENMKLVDKPKKTKTGQYKTGEDILSFLAKEHKIIRDIQEYRQ 648

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     ++ L   +N       T      + TGR S      QN+P  +    E   
Sbjct: 649 Y-KKLQSTYVDALPNEINKKTGRIHTQYMQAVAATGRLSSNNPNLQNIPIRTERGRE--- 704

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   +   E   L+ AD + IE R++A ++ E+  + 
Sbjct: 705 ----------------------VRKAFVPKDENYVLLAADYSQIELRIIAALSEEETMIN 742

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ GED++ +T A+ F V    VT++QR+  K +   + Y            +   +  
Sbjct: 743 AFKNGEDIHASTAAKVFGVDINDVTREQRSNAKTVNFGIVY-----GVSAFGLSNQTD-- 795

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                      + +   + + + ++   
Sbjct: 796 -------------------------------------LSRGEAKELIDTYYETYPKLKAY 818

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            +       +        +                          R    +D+ +  + +
Sbjct: 819 MSAQVDFARE--HGYVETVLN------------------------RRRYLKDINSRNAMV 852

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
            +   +               +Q  + DI+   M+N             ++L VHDE+V 
Sbjct: 853 RSGAERN---------AVNAPIQGSAADIIKLAMINIHNRFIQEGFKSKMLLQVHDELVF 903

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +    +      ++ + M +       +PL  E    + +
Sbjct: 904 DAHKDELETIKPIIKNEMENAFKMT--VPLDVEMGIGQNW 941


>gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1]
 gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1]
          Length = 913

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 200/701 (28%), Gaps = 162/701 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +   +          H             + 
Sbjct: 339 SFDTETTSLDPMI----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ +   V  +  ++  VL     +++       TL+ +              
Sbjct: 389 ARLKPWLESVEHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSL 446

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E               A     EY   D  +T  + + 
Sbjct: 447 ALRHLGVKTI----------KYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQV 496

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E     + + +   G  +D       +  +     +L+ E  
Sbjct: 497 LYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAY 556

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 557 VLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDFPLPKILLEH 615

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N+      T      + TGR +      QN+P  +      
Sbjct: 616 R-GLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRR- 673

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G KLV AD + IE R++A ++G++  L
Sbjct: 674 ------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLL 709

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           ++F  GED++  T A  F+V P +V+ DQR + KV+                    G++ 
Sbjct: 710 RSFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSS 755

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A        A +     +  ++  V+ 
Sbjct: 756 FGL------------------------------ASNLGITRDAAKLYIDRYFARYPGVAR 785

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             +E   + +                              +    GR L   ++      
Sbjct: 786 YMDETRVSAK--------------------------AKGYVETVFGRRLWLPEINGGNGP 819

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                    R            +Q  + D++   M+         K G  +++ VHDE++
Sbjct: 820 RRQA---AERAAINAP------MQGTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDELI 870

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E PD +  +    L  LM         +PL AE      +
Sbjct: 871 LEVPDAELSDVRKRLPELMCGVAD--LKVPLVAEVGAGLNW 909


>gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 930

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 97/701 (13%), Positives = 207/701 (29%), Gaps = 160/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQV---L 57
            +   D ET     L             ++  +F F+                 ++    
Sbjct: 357 KSFCFDTETTGLDALV----------ADIVGLSFAFEKGKAYYVPTPDSREQALEIVNIF 406

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K  LE+ ++  V  N  ++  +L    ++ +       T++            +  + E 
Sbjct: 407 KPVLEDANIEKVGQNIKYDILLLSRY-DVKVK-GTLFDTMLAHYLIDPDTRHGMDVLAE- 463

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                       +LI              +          L  EY   D  +T ++ ++ 
Sbjct: 464 -NYLGYIPVSITKLIGE---------KGKKQGNMRDVEIELIKEYASEDADITLQLKEKF 513

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EPL  +          E  L Y+   I   G  +DV +    ++ ++ +   L+  +   
Sbjct: 514 EPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASIYEK 573

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +    ++L   LF +  L  +   T+     T + VL +    +     + + R
Sbjct: 574 AGVK-FNIASPKQLGEVLFDKLQLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQDILDFR 632

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L   +N    L  T      + TGR S      QN+P  +    E  
Sbjct: 633 Q-LQKLKSTYVDALPGLINPTTGLIHTSYNQAVAATGRLSSTNPNLQNIPIRTERGRE-- 689

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  VR   I   E   ++ AD + IE R++A ++ +   L
Sbjct: 690 -----------------------VRKAFIPRSENNVILSADYSQIELRLMAELSQDANML 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G D++  T A+ + +   +V+ DQ                               
Sbjct: 727 EAFQKGYDIHRATAAKVYGLELDEVSSDQ------------------------------- 755

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                             A NF     ++    +            +   + Q++S + +
Sbjct: 756 -------------RRNAKAVNFGIIYGQSAFGLSQSLGIPRREAADIIDQYFQQYSGIRD 802

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
              +   + ++                          N  +     R    RD+ +    
Sbjct: 803 YMAKAIASAKE--------------------------NGFVETILKRRRYLRDINSANM- 835

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633
             T      R            +Q  + D++   M+   +          +++ VHDE+V
Sbjct: 836 --TVRGFAERNAINAP------IQGSAADMIKVAMLRIQEDIEQQQLSGKMIMQVHDELV 887

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            + P  +      ++ + M +       +P++ E  + K +
Sbjct: 888 FDVPLDEVEKFKTLIQNRMKTAIP--LQVPIEVEIGQGKNW 926


>gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium]
          Length = 927

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 98/706 (13%), Positives = 190/706 (26%), Gaps = 169/706 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S                 ++  +F             HD            + 
Sbjct: 352 AVDTETTSVD----------YRLARIVGVSFALQASEAFYIPIGHDYMGAPEQLDAKFVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALK 110
             LK  LEN  +  +  +  ++  V        I +  W   T++ +           + 
Sbjct: 402 DTLKPILENPAIGKIGQHMKYDAHVFNNH---GISLAGWAFDTMLASYVLNPTATRHGMD 458

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + +              L       E       +    ++        Y   D  +T  
Sbjct: 459 DLAQYY------------LDYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADITWR 506

Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +++                   E     +   + + G  +D+     L Q    +   L+
Sbjct: 507 LYEYFAQALAKIPKLEKLLLEIEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275
                L      +    ++L   LF + G+     T +    T + +L       P    
Sbjct: 567 SHAIELAGQP-FNVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEKI--DHPIIAT 623

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   S+      ++L+   +S+ +   T      + TGR S      QN+P     
Sbjct: 624 ILEYR-SLSKLKSTYTDSLIAQSDSETQRVHTSYHQAITATGRLSSTDPNLQNIPIRGEV 682

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G+ ++ AD + IE R++A  + +
Sbjct: 683 GR-------------------------QIRQAFIAPKGRIILAADYSQIELRLMAHFSQD 717

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  LKAF  G D++  T A    +A   VT DQR   K +                    
Sbjct: 718 EALLKAFRDGRDIHQATAAEVMGIALEDVTSDQRRQAKAIN--------------FGLLY 763

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A +        +     +  ++ 
Sbjct: 764 GMS------------------------------AFGLAKQLKLSRAEAQEYITLYFSRYP 793

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +             +     +                         GR L   ++  
Sbjct: 794 SVHDYMENTR--ALAAEQGYVETVL------------------------GRRLYMENIRA 827

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDE 631
             + +        R             Q  + DI+   M++      K    ++L VHDE
Sbjct: 828 GNAMVRQA---AERAAINAPL------QGSAADIIKLAMISVDQALPKEHAKMLLQVHDE 878

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKG--LPLKAEGYESKRYR 674
           +V E  +       ++L  LM +         +PL+ E      + 
Sbjct: 879 LVFEVDEDKADEVTALLKKLMPAVLQGRADIAVPLEIEVGRGVNWG 924


>gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
 gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1]
          Length = 944

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/715 (14%), Positives = 191/715 (26%), Gaps = 174/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
            +  D ET +                 +   +              H             
Sbjct: 356 IVAFDTETDALSS----------ATAGLCGVSLAVAPGEACYIPLGHCEAEGLQLEAAAD 405

Query: 50  -----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                       LK  LE+  V  VA N+ ++  VL       I +     T++++    
Sbjct: 406 LTQIPLEQAIARLKPLLEDPSVLKVAQNAKYDIAVLSRY---GIEVGPIDDTMLISYVLE 462

Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  +         K+    E IA               K            Y 
Sbjct: 463 AGLHNHGMDELS--------KLGLDHEPIAFKS----VAGTGKAQKSFKYVGLSEATCYA 510

Query: 162 KGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P  + E          + +  +   +   G  VD      L+   
Sbjct: 511 AEDADVTLRLWEHLKPRLAHEGLATVYETLERPMPKVLADMECAGAKVDAERLRQLSNEF 570

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                +L+ E   L      +    +++   LF E GL    +T     +T   +L    
Sbjct: 571 GQRMAELEAEAHRLAGRP-FNLGSPKQIGEVLFKEMGLASGRVTATGAFSTDASMLEDLA 629

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +  ++  +  + S+      + LV A++       T   L ++ TGR S       
Sbjct: 630 AQGHELPRILLDWRQLSKLKGTYTDALVAAISEQTGRVHTSFSLASTTTGRLSSSDPNLM 689

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R   +A  GK L+ AD + IE R
Sbjct: 690 NIPIRTEEGRK-------------------------IRRAFVAEPGKVLISADYSQIELR 724

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +       +AF  G D++  T +  F V    +  + R   K +            
Sbjct: 725 LLAHIGDIPQLKRAFREGLDIHAMTASEMFGVPVEGMPSETRRRAKAINF---------- 774

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++                                  A +            
Sbjct: 775 ----GIIYGIS------------------------------AFGLANQLGIPQDEAGAYI 800

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           K + ++   +    +   QA                                +    GR 
Sbjct: 801 KTYFERFPGIRAYMDRTKQAARS--------------------------QGFVHTIFGRK 834

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAG 621
           +    V +             R            +Q  + D++   M+            
Sbjct: 835 VNIPAVKSKSQAER---AFGDRAAINAP------IQGSAADVMRRAMIRMPGALKAEGLT 885

Query: 622 YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE+V E P+ +      +   +M     P+ A  +PL  E   +  +
Sbjct: 886 ARMLLQVHDELVFEAPEAEAEAVIRIAKAVMEKAAEPAVAISVPLVVEARAAPNW 940


>gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
 gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100]
          Length = 935

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 99/701 (14%), Positives = 206/701 (29%), Gaps = 161/701 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
               D ET                   ++  +F +                   + ++ +
Sbjct: 362 EFCFDTETTHVEPT----------QAELVGMSFAYKSGEAYYVPVPAGKENAQAVVEIFR 411

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
             LEN  +  +A N  ++  V K    +++    +  T+V            +  + E  
Sbjct: 412 PVLENEKILKIAQNLKYDAIVFKWY-GVEVR-GPYFDTMVAHYLLEPEMRHGMDYLAETY 469

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              S      + LI +                  +       +Y   D  +T ++ +   
Sbjct: 470 --LSYSPISIEMLIGK---------KGKDQLNMSQIDLEKVTDYAAEDADITLQLKELFA 518

Query: 177 PLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P              E  L  +   +   G  +D       ++ ++++   L+Q +    
Sbjct: 519 PKLEEGGVQELFDTIECPLIKVLADLEYEGIRIDSDYLDVYSKELEIQIQTLEQSIYEQA 578

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF    +       +    +T +  L       P    + N R 
Sbjct: 579 GVK-FNIGSPKQVGDLLFERLKVPYKGAKTKTGQYSTDEDKLLELAPEFPIIQTILNFR- 636

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             ++     ++ L + +N   GR+  +     A+ TGR S      QN+P  +    +  
Sbjct: 637 GLAKLKSTYVDALPKMVNPRTGRIHSSFNQALAA-TGRLSSNNPNLQNIPVRTPEGAK-- 693

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKL 399
                                  VR   I  +    L+ AD + IE R++A ++G+   L
Sbjct: 694 -----------------------VRRAFIPRDDQHTLLSADYSQIELRLIADISGDVAML 730

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+  +D++  T A+ FNV    VT++QR   K +                        
Sbjct: 731 EAFQNNQDIHTATAAKVFNVPFDLVTREQRYQAKTVN----------------------- 767

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                F           + +     T  + +  A+   +S +  
Sbjct: 768 ---------------------FSILYGAGATNLSRQLSIKRTEAKELIDAYFALYSGLKG 806

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               +    E   +NG                             GR    R++ +  S 
Sbjct: 807 YMVTV---VEDARKNGYVTTL-----------------------MGRRRYLREINSKSSL 840

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
             +      R            VQ  + D++   M+N  +A         ++L VHDE+V
Sbjct: 841 ERSN---AERVA------VNTPVQGSAADMIKVAMVNIHQALLEQGLKTKMILQVHDELV 891

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            + P+ +      ++   M S       +P++      + +
Sbjct: 892 FDVPNEELEIVKPIIVEKMRSALP-KLKVPIEVGLGTGQNW 931


>gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400]
 gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400]
          Length = 913

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 198/701 (28%), Gaps = 162/701 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +   +          H             + 
Sbjct: 339 SFDTETTSLDPMI----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+     V  +  ++  VL     +++       TL+ +              
Sbjct: 389 ARLKPWLESAGHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSL 446

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E               A     EY   D  +T  + + 
Sbjct: 447 ALRHLGVKTI----------KYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQV 496

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E     + + +   G  +D       +  +     +L+ E  
Sbjct: 497 LYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAY 556

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 557 VLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDFPLPKILLEH 615

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N+      T      + TGR +      QN+P  +      
Sbjct: 616 R-GLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTGEGRR- 673

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G KLV AD + IE R++A ++G++  L
Sbjct: 674 ------------------------IREAFIAPAGHKLVSADYSQIELRIMAHISGDESLL 709

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +F  GED++  T A  F+V P +V+ DQR + KV+                    G++ 
Sbjct: 710 HSFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSS 755

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A        A +     +  ++  V+ 
Sbjct: 756 FGL------------------------------ASNLGITRDAAKLYIDRYFARYPGVAR 785

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             +E   + +                              +    GR L   ++      
Sbjct: 786 YMDETRVSAK--------------------------AKGYVETVFGRRLWLPEINGGNGP 819

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
                    R            +Q  + D++   M+         K G  +++ VHDE++
Sbjct: 820 RRQA---AERAAINAP------MQGTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDELI 870

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E PD +  +    L  LM         +PL AE      +
Sbjct: 871 LEVPDAELSDVRKRLPELMCGVAD--LKVPLVAEVGAGLNW 909


>gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
 gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957]
          Length = 968

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/709 (15%), Positives = 198/709 (27%), Gaps = 162/709 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51
           L ID ET S   L          +  ++  +              H P            
Sbjct: 379 LAIDTETDSLDAL----------NANLVGLSLAVAPGRACYVPLRHGPPPGSGDLLAEAP 428

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                     + + L+  L +  V  + HN+ ++  VL    +  + I     T++++ S
Sbjct: 429 AAPAQLSQAEVVEALRPLLADPAVLKILHNAKYDLEVLARPEHGALDITPVDDTMLISYS 488

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  +             G   I                 P  + A      
Sbjct: 489 MDAGRHGHGMDELSLRH--------LGHRPIPFD----EVTGTGRARIPFSQVALDKATA 536

Query: 160 YCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  VT  +++ L P              E+ +  + + +   G  VD A    + +
Sbjct: 537 YAAEDADVTLRLWQALRPRLRPDRSLALYEQVERRMVAVLRDMEMAGIKVDGAELARIGE 596

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265
                   L+QE+  L      +    ++L   LF E  L      +     T   VL  
Sbjct: 597 DFSQRMVVLEQEIHELAG-KPFNVGSPKQLGEILFDEQKLPGGKRGKNGAWGTDASVLED 655

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                 +  +   +  + ++     +  L   ++       T   +  + TGR S     
Sbjct: 656 LAARGHELPRRVLHWRQLAKLKSTYVEGLAAQIDRRDGRVHTDFSMAVTSTGRLSSTEPN 715

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +                              +R   +A  G  L+ AD + IE
Sbjct: 716 LQNIPIRTEEGVR-------------------------IRRAFVAEPGHVLLAADYSQIE 750

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A       AF  GED++  T A  F +AP +V K+ R   K +   + Y   A
Sbjct: 751 LRLLAHLADVPSLRDAFAKGEDIHSRTAADIFGLAPDKVDKEARRRAKTINFGIIYGMSA 810

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                      L +         ++   ++         ++    E        G     
Sbjct: 811 -----FGLAARLGIGPGEARGIIDAYFSQYPGILEEMERLKSEAREKGYVLSPFGR---- 861

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                        +LW +  QA EQ                                   
Sbjct: 862 -------------KLWIDGIQAKEQARRG------------------------------- 877

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                      R+ +N    Q          +                 + A      ++
Sbjct: 878 --------NAERAAINAPF-QGGAAEIIKRAMVRMP-----------AALRAAGLSARML 917

Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDE++ E P+ +    +  +  +M S  +    +PLKAE      +
Sbjct: 918 LQVHDELLFEVPEAEVDATAECVRQVMESVAT--LRVPLKAEIGHGANW 964


>gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 984

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/700 (14%), Positives = 209/700 (29%), Gaps = 148/700 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVH-------DPVMPQVL 57
           D ET                +  ++     +             H          + + L
Sbjct: 398 DTETSDLKP----------RNAELVGIGCCWGLEATDTAYIPIAHNQGQNLDQQTVLEAL 447

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           +  LE      V  N  F+R VL     + +     + T++ +          L ++ E 
Sbjct: 448 RPILERDRYPKVLQNVKFDRLVL-RTQGIKLA-GVVMDTMLASYVLNPDNSHNLNSLTER 505

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +++  K+L               + K     + +    YC   V  T ++  +L
Sbjct: 506 Y-FPQIQLKSYKDL------------KIPKGKTIAELSSKTVANYCGMQVYATFKLVPKL 552

Query: 176 EPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                            EQ L  +   +  +G  +D A    L++ ++ +   ++Q    
Sbjct: 553 REKLEAIPAIEKLLLEVEQPLEPVLAQMEYQGIRIDTAYLKELSESLEKKLVDIEQNAYK 612

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L   LF +  L      +     +T    L   +   P    +  +
Sbjct: 613 QAG-EEFNLGSPKQLSELLFEKLNLDRRKSRKMKTGYSTDHATLEKLQGDHPVIDTILEH 671

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+     ++ L + ++ D +   T      + TGR S      QN+P  +      
Sbjct: 672 R-TLSKLKSTYVDALPKLVHKDTQRIHTDFNQTITSTGRLSSSNPNLQNIPIRTA----- 725

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                S  +R   +   G  LV AD + IE R+LA ++ E   +
Sbjct: 726 --------------------FSRQIRKAFLPESGWLLVSADYSQIELRILAHLSQEPVLV 765

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           + +   +D++  T    F      VT ++R +GK +   + Y  G + F + A      +
Sbjct: 766 ETYRNNQDIHAVTAKLLF--EKETVTPEERRLGKTINFGVIYGMGPQRFAREA-----GV 818

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   + +     +   M+ +       +  +G       + + + +S    
Sbjct: 819 SAAEGKEFIDRLKQRYPKVFGYLEQMKGDAIAKGYVETILGR------RRYFEFNSN--- 869

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                        +   K KN   + L            +    
Sbjct: 870 ----------------------------RLRDAKGKNPQEIDL------------DEFKG 889

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635
           +      L R            +Q  S DI+   M+   +        ++L VHDE+V E
Sbjct: 890 IGQYDSGLLRAAANAP------IQGSSADIIKIAMVKMHEVLQDYQARLLLQVHDELVFE 943

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            P  +       +   M S       +PL  +  E + + 
Sbjct: 944 VPPDEWEELQPKIRETMESAVE--LTVPLVVDVSEGENWM 981


>gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.]
          Length = 912

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/706 (15%), Positives = 205/706 (29%), Gaps = 165/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--- 57
               +D ET S   L             ++  +     +        H    +P+ L   
Sbjct: 334 NHFALDTETTSENPLK----------AKLVGISVSLKANEAFYIPLAHKYEGVPKQLDMN 383

Query: 58  ------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108
                 K   EN D+  +  N  ++  VLK    +DI    +  T++ +           
Sbjct: 384 ETLNMLKGVFENPDIKKIGQNIKYDWIVLKRH-GIDIA-GVYSDTMIASYLINPSKRAHN 441

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L  +             G + I      E                      Y   D  +T
Sbjct: 442 LDQIAL--------DFLGHKKITF----EETVGKKKPESGFSNVPLEKAVSYACEDADIT 489

Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
                 L P            + E  L  +   +  +G CVD      L++  + +   L
Sbjct: 490 LMAHDVLFPKLLEIGLKDLFENIEMPLIPVLMKMEIKGICVDRNRLSELSKHFEQQIEDL 549

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQA 273
           ++ + S+      + +  ++L   LF +  L ++         +T   VL+   +     
Sbjct: 550 EENIYSVAGMT-FNIKSPQQLGEVLFEKLMLPVKKKTKKKTGYSTDVDVLTELAQNHELP 608

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             V  +R   S+      + L+E  + +     T      + TGR S      QN+P  +
Sbjct: 609 ALVLRHR-TLSKLKSTYTDALLEIADPETERIHTSFNQTVTATGRLSSSNPNLQNIPVKT 667

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               E                         +RS  +  +G KL+ AD + IE R+LA  A
Sbjct: 668 DEGRE-------------------------IRSAFVPKKGWKLLSADYSQIELRLLAHCA 702

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF   ED++  T    F + P  +T + R   K +                + 
Sbjct: 703 EDEILINAFLEDEDIHTRTAIEIFQIFPEFITPELRYQAKTIN--------------FSI 748

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                  + +        +     +  +
Sbjct: 749 MYGIS------------------------------AFSLSKDLGISQKMAQTYINNYFAR 778

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V      + +       N K                            GR  +  D+
Sbjct: 779 YKEVKRF---IDKTISDAHVNKKTSTLL-----------------------GRIRLLPDI 812

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627
            ++   +        R            +Q  + D++   M+N  KA         ++L+
Sbjct: 813 DSSNKIV---IAAAERIA------VNTPIQGTAADLIKIAMINIDKAFTEKKLKAAMLLS 863

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E P  +    S L   M  N  W   +PLK      + +
Sbjct: 864 VHDELVFEVPPDELDMVSDLVKNMMENV-WTLKVPLKVNISSGENW 908


>gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 921

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/713 (14%), Positives = 208/713 (29%), Gaps = 175/713 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52
            + +D ET +            A    ++  +   +        C H             
Sbjct: 340 QVAVDTETDNLD----------ATQARLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQM 389

Query: 53  ----MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106
               + + LK  LE+  +  +  N  ++  VL       I +  +  T++L+        
Sbjct: 390 DLSLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRY---GISVQPFDDTMLLSYDLDAGRH 446

Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              +  +               + I+                  +         Y   D 
Sbjct: 447 GHGMDELSLLY--------FDHQPISFKS----VCGTGKSAITFNHVPIPAATRYAAEDA 494

Query: 166 TVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
            +T  ++  L+P              ++ L  +   +   G  VD    H L+     + 
Sbjct: 495 DITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDI 554

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
           ++L++E+  L           ++L   LF   GL     +++    T    L        
Sbjct: 555 SRLEEEIYVLAGCR-FLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLAAEGE 613

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                     + S+      + L+  +N +     T   L  ++TGR S      QN+P 
Sbjct: 614 VIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGAQTGRLSSTDPNLQNIPI 673

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +    E                         +R+  IA +G  L+ AD + IE R+ A 
Sbjct: 674 RTEIGRE-------------------------IRNAFIAKKGHLLLSADYSQIELRLAAH 708

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A E+  L+AF+  ED++  T  + F      V ++ RA  K +  A+ Y          
Sbjct: 709 VADEKALLQAFQEKEDIHALTAKQLFGH----VDRESRARAKTINFAILY---------- 754

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  ++ +                                  + +   + 
Sbjct: 755 ----GISAWGLAARLEIDRFS------------------------------AQEMIDRYF 780

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           ++   +    +                                  +  +  P GR     
Sbjct: 781 ERFPAIRHYIDRTLDFVR--------------------------LHGYVETPFGRKTHLP 814

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGY---DI 624
            + + +           R+           +Q +S DI+   M+       KAG     +
Sbjct: 815 AIKSRKVTERQA---AERQAINAP------IQGMSADIIKRAMVRMEPALAKAGLSSVKM 865

Query: 625 VLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674
           +L VHDE++ E P+ D   A  ++  +M     P     + L+ E      + 
Sbjct: 866 LLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSVDLEVEIGTGTSWG 918


>gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 891

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/702 (16%), Positives = 216/702 (30%), Gaps = 163/702 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC---VHDPVMPQVLK 58
             + +D ET     L          +  ++    G +            ++   +   LK
Sbjct: 322 KEICLDTETTDLRPL----------EAQLVGIGLGVEPKKAWYIPLNGQLNGDFVLSQLK 371

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALKAVGE 114
             LEN  +    HN  ++  VL+     +I +      T++ +          +L  +  
Sbjct: 372 PLLENPSIGFYGHNFKYDYHVLRNH---NISVANISFDTILASYLLNSHKRQHSLDHLA- 427

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L+L  +     +ELI                      A      YC  DV  T  +   
Sbjct: 428 -LELFDKVKIAIQELI----------GKGKNQLNMKNVALDKICHYCCEDVDYTIRLKNI 476

Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L     + +           L  +   +   G  +D A    L+Q +  E   L+Q + +
Sbjct: 477 LLSQLEERKLTSLLFDLELPLLSVLAQMERNGIFIDTAYLKHLSQFIGQEIHCLEQNIYA 536

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
           L    + +    ++L   LF + G+          +T   VL   K + P A ++   R 
Sbjct: 537 LAG-EIFNLNSPKQLSQILFHKLGIKPPKKIATGHSTNAEVLEILKHVYPIAEKLLEYR- 594

Query: 282 RASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     +N+L   +N   GR+        A+ TGR S      QN+P  +       
Sbjct: 595 TLEKLRSTYVNSLPLQVNAKTGRIHCNFNQSMAA-TGRLSCQDPNLQNIPVRTEVGR--- 650

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  +R       E    + AD + IE R+LA ++ +   +
Sbjct: 651 ----------------------QIREAFRPEKEDWSYLSADYSQIELRLLAHLSEDPVLI 688

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF + ED++  T +  F+V   QV+ +QR   K +   L                    
Sbjct: 689 KAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQAKAVNFGLI------------------- 729

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                      +     A E            + + +++ +V E
Sbjct: 730 -------------------------YGQQAFGLAHELGIDTKTAAAFIQRYFERYGKVKE 764

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 Q+  +T   GKA+                          GR  +  ++ +  + 
Sbjct: 765 FLEACKQSARET---GKAVTMY-----------------------GRERLLPEIRSQNAM 798

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633
           +  T  +               +Q    D++   M+         K    ++L +HDE++
Sbjct: 799 IRATADRF---------AVNTPIQGTQADLIKMAMLKINKLLIQEKKKGFMILQIHDELI 849

Query: 634 CETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
            E P+ +  + S L    M +       +PL    +  K ++
Sbjct: 850 FEVPNQELESISHLVKNTMENII--NLKVPLIVNIHIGKNWK 889


>gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
 gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1]
          Length = 937

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 115/701 (16%), Positives = 210/701 (29%), Gaps = 156/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + +D ET S   +             ++  +F    +        H            
Sbjct: 360 DLVALDTETDSLDGMR----------ARIVGLSFSVQPYEACYIPLAHTYPGAPDQLPLD 409

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109
            +   LK  LE+     +  N  ++  V      + +  +    TL+ +       P +L
Sbjct: 410 EVLAALKSWLEDGSRAKLGQNVKYDTHVFANH-GIAVRGY-VHDTLLQSYVLEAHKPHSL 467

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           +++                L  +    E       +  P  +       EY   D  +T 
Sbjct: 468 ESLASRH------------LDRKGLSYEDVAGKGAQQIPFAQVELTRATEYSGEDSDMTL 515

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L P               E     +   I   G  +D AL    +  +      L
Sbjct: 516 DVHRVLWPQLEAAPRLREVYERIEMPTSVILGRIERHGVLIDSALLARQSADLAQRMVAL 575

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAI 274
           +QE  +L      +    +++   LF + G+  +  T     +T + VL+      P   
Sbjct: 576 EQEAHALAGQP-FNLGSPKQIGEILFNKLGIPAKKKTASGAPSTDEEVLAELAADYPLPA 634

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           ++  +R   ++      + L   +N+  GR+        A  TGR +      QN+P  +
Sbjct: 635 KLLEHR-SLAKLKGTYTDKLPLMVNAATGRVHTNYAQAVA-VTGRLASNDPNLQNIPIRT 692

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR   IA  G  ++ AD + IE R++A ++
Sbjct: 693 PEGRR-------------------------VREAFIAPPGHVILSADYSQIELRIMAHIS 727

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   LKAF  G D++  T +  FNV  A+V+ +QR   KV+   L Y  GA        
Sbjct: 728 EDPGLLKAFAEGLDVHRATASEVFNVPVAEVSSEQRRYAKVINFGLIYGMGA-----FGL 782

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
            + L +   A     +     +   + +    +    E    +   G          R  
Sbjct: 783 ASNLGIEQKAAKDYIDRYFARFAGVKRYMDETRARAKELGYVETLFGR---------RIY 833

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              ++                                             +G        
Sbjct: 834 LPEING-------------------------------------------GNGPRRT---- 846

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           G  R  +N   +          KL    VQ           ++A +    +V+ VHDE+V
Sbjct: 847 GAERQAINAPMQG---TAADLIKLAMIAVQ---------AALDAQQRATCMVMQVHDELV 894

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P+ +   A   +  LM         +PL AE      +
Sbjct: 895 FEVPEAELDWARTAVPELMAGVAE--LKVPLLAEVGVGANW 933


>gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 930

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 95/701 (13%), Positives = 208/701 (29%), Gaps = 160/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL--- 57
            +   D ET     L             ++  +F  +                 +++   
Sbjct: 357 KSFCFDTETTGLDALV----------ADIVGLSFAIEKGKAYYVPTPDSREQALEIINIF 406

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K  LE+  +  +  N  ++  +L    ++ +       T++            +  + E 
Sbjct: 407 KPILEDPAIQKIGQNIKYDILLLSRY-DVKVK-GALFDTMLAHYLIDPDTRHGMDVLAE- 463

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                       +LI              +          L  EY   D  +T ++ ++ 
Sbjct: 464 -NYLGYIPVSITKLIGE---------KGKKQGNMRDVEIELIKEYASEDADITLQLKEKF 513

Query: 176 EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EPL  +          E  L Y+   I   G  +DV +    ++ ++ +   L+  +   
Sbjct: 514 EPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASIYEK 573

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +    ++L   LF +  L  +   T+     T + VL +    +     + + R
Sbjct: 574 AGVK-FNIASPKQLGEVLFDKLQLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQDILDFR 632

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L   +N +  L  T      + TGR S      QN+P  +    E  
Sbjct: 633 Q-LQKLKSTYVDALPSLINPNTGLIHTSYNQAVAATGRLSSTNPNLQNIPIRTERGRE-- 689

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  VR   I   E   ++ AD + IE R++A ++ +   L
Sbjct: 690 -----------------------VRKAFIPRSENNVILSADYSQIELRLMAELSQDANML 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G D++  T A+ + +   +V+ DQ                               
Sbjct: 727 EAFQKGYDIHRATAAKVYGLELDEVSSDQ------------------------------- 755

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                             A NF     ++    +            +   + Q++S + +
Sbjct: 756 -------------RRNAKAVNFGIIYGQSAFGLSQSLGIPRREAADIIDQYFQQYSGIRD 802

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             ++   + ++                          N  +     R    RD+ +    
Sbjct: 803 YMSKAIASAKE--------------------------NGFVETILKRRRYLRDINSANM- 835

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIV 633
             T      R            +Q  + D++   M+   +          +++ VHDE+V
Sbjct: 836 --TVRGFAERNAINAP------IQGSAADMIKVAMLRIQEDIEEQQLAGKMIMQVHDELV 887

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            + P  +      ++ + M +       +P++ E  + K +
Sbjct: 888 FDVPLDEVEKFKTLIQNRMKTAIP--MQVPIEVEIGQGKNW 926


>gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1]
          Length = 959

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/716 (14%), Positives = 208/716 (29%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
              ID ET               +   ++  +    D+        H             
Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
              +    K  LEN ++  +  +  ++  + K    ++I   +   T++ +         
Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             + A+ +              L  +    E       +     + A     +Y   D  
Sbjct: 481 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 528

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215
           +T  +F R     ++++    L   +              G  +D      L+   D + 
Sbjct: 529 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 588

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
             L  E E +      +    ++L   LF + G+     T+T    T + VLS      P
Sbjct: 589 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 645

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               V  +R   S+      +TL  A +  GR+  +      + TGR S      QN+P 
Sbjct: 646 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 703

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            + +                            +R   IA +G+ ++ AD + IE R++A 
Sbjct: 704 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 738

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G++  ++AF    D++  T A       ++VT  +R   K +                
Sbjct: 739 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF-------------- 784

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  +  + A                                +   K + 
Sbjct: 785 GLLYGMSAFGLAKQIGVDRAV------------------------------AQDYIKRYF 814

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  + E         +Q                             +    GR L   
Sbjct: 815 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 848

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627
           D+ ++   +        R             Q  + +I+   M+       K    ++L 
Sbjct: 849 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 899

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673
           VHDE+V E   D      +++   M +  +       WA    +PL  E    + +
Sbjct: 900 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955


>gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
 gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845]
          Length = 920

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 99/698 (14%), Positives = 199/698 (28%), Gaps = 159/698 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           + ID ET S   ++            ++  +F  ++          +      + Q+ K 
Sbjct: 350 VSIDTETTSTDAIS----------AELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKP 399

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117
             E+  +  +  N  ++  VL     + +   +   T++            +  + E L 
Sbjct: 400 LYESDKIMKIGQNIKYDYEVLTRY-GVTLQ-GKMFDTMIAHYLIQPELHHNMDYMAETL- 456

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                   G + I      E       + K     +     EY   D  +T  +   LEP
Sbjct: 457 -------LGYQTIH---IEELLGPKGKKQKNMRDLSPTDIYEYAAEDADITLRLKNVLEP 506

Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +   +   G C+D       ++I      + +QE+     
Sbjct: 507 RLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIYKEAG 566

Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    +++   LF +  +      T+T    T + VL S +  +P    + N R  
Sbjct: 567 -EEFNISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIVRNILNYR-G 624

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +     ++ L + +N       T      + TGR S      QN+P  +   +E    
Sbjct: 625 MKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKE---- 680

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R C I  +G     AD + IE R++A ++ ++  ++AF
Sbjct: 681 ---------------------IRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMMEAF 719

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A+ ++V   +VT  QR   K     +                G+     
Sbjct: 720 REGHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGII--------------YGITTYGL 765

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A  +                                     + + + + +   +V     
Sbjct: 766 AQRMDI------------------------------PNGEAKELIEGYFRTFPKVQVYME 795

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +                                       R     D+ +  +   T
Sbjct: 796 HAKEVAR--------------------------AKGYAETLFHRRRYLADINSRNA---T 826

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q    DI+   M+   +          ++L VHDE+    
Sbjct: 827 VRGFAERNAINAP------IQGTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSV 880

Query: 637 PDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              +      +    M +   +   +PL A+    K +
Sbjct: 881 FPEEREQVERIVIEEMQNA--YPLNVPLIADAGWGKNW 916


>gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 712

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 262/713 (36%), Positives = 355/713 (49%), Gaps = 63/713 (8%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L+ D ET SP+ +   G+  YAE   ++LFA+   D PV++WDC     MP+ L  AL 
Sbjct: 10  ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
           N  V +  HNS+F+RTVL     ++IP+ RW  ++  A ++ LP AL  + E L++  + 
Sbjct: 69  NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127

Query: 122 -KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K ++GK L+A FCK     C   R  +  H   W  F +Y + DVT  R++ KRL   +
Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHN 187

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               EL  W+LDQTINDRG  VD  LA      V+  +  L +    LT G+V ++   +
Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   L  E G+ L D+ + T +R L  +  L     ++ + R +AS ++  K   L+  
Sbjct: 248 ALLHHLSTEHGVVLPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
            + DGRLRGTLQF GASRTGRW+G +F P NLPRP+ S   +   I  +          D
Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDD 366

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------- 408
            + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  KL+AF   +         
Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTW 426

Query: 409 ---------------------------------YVTTYARSFNVAPAQVTKDQRAIGKVM 435
                                            Y   YA SF +AP  VTK+QR IGKV 
Sbjct: 427 HSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQ 486

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
           ELALGY GG  AF   A+   ++L   A        P   + A    +W + NH      
Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL--PPLLLQQAVEALQWTKANHRPTFGL 544

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 AC+  K+AWR  H  ++  W  L  A    I + +            + ++  +
Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA-----HTCCGITVQYSR 599

Query: 556 NNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDI 609
             L + LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+
Sbjct: 600 AWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLP 662
           LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P   +G P
Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPGHRGCP 712


>gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4]
 gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4]
          Length = 956

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/719 (13%), Positives = 199/719 (27%), Gaps = 181/719 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------DPV 52
           ID ET S           Y     ++  +F    H        H                
Sbjct: 364 IDTETTS----------VYWRQAELVGLSFAVQAHEAYYIPLTHSLEGDELTEKQLDRDT 413

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKAC-----FNLDIPIHRWI-CTLVLARSNGL- 105
           +   LK  LEN+ +  +  +  ++  +L         N+    + W   T++ +      
Sbjct: 414 VLVRLKSILENSSIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAA 473

Query: 106 --PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                +  +                L  +    E       +     + A  +  +Y   
Sbjct: 474 VTRHGMDDLARHY------------LQTQTISFEDVAGKGAKQVSFDQVAIDIASDYACE 521

Query: 164 DVTVTREIFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           D  +T ++F+      + +                +   +   G  +     + L++  D
Sbjct: 522 DADITYQLFELFSQKLADDTNNAKLLHALEIPTAEILCQMEAHGILIKRPFLNELSKRFD 581

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268
            E   L++    +      +    ++L   LF + G+     T+    +T + VLS    
Sbjct: 582 EEIIALEKRAYEVAG-EEFNLGSPKQLGEMLFDKLGVAGGKKTKTGQYSTGEAVLSKI-- 638

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P        R   S+      + L    +S+     T      + TGR S      QN
Sbjct: 639 DHPLVDITLEYR-GLSKLKSTYTDALDNVADSETDRVHTSYHQALTSTGRLSSTDPNLQN 697

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  + +                            +R   IA EG+ ++ AD + IE R+
Sbjct: 698 IPIRTATGR-------------------------LIRQAFIAPEGRVILAADYSQIELRL 732

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A  +G++    AF  G D++  T A       A VT  +R   K +             
Sbjct: 733 MAHFSGDKNLTHAFNEGLDIHAATAAEVLGKEVADVTATERRNAKAINF----------- 781

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G++    A  ++                                 +  +    
Sbjct: 782 ---GLLYGMSAFGLAKQLQM------------------------------SRSEAQDYID 808

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            + +++  V +       +  +                          +  +    GR L
Sbjct: 809 MYFERYPGVKDYMINTRASAYE--------------------------HGYVETILGRKL 842

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI 624
              D+ ++   +        R             Q  + D++   M+   K        +
Sbjct: 843 YTPDINHSNRMVKQ---GAERAAINAPL------QGSAADLIKLAMIAVDKVLPKHQAKM 893

Query: 625 VLTVHDEIVCETPDTDEFNASM-LYHLM-----TSNPS--WAKG--LPLKAEGYESKRY 673
           +L VHDE+V E         S  +   M      +     W     +PL  E    + +
Sbjct: 894 LLQVHDELVFEVDANKVDEISQLITDAMQNVLTATAVEKGWNVNFAVPLLVETDSGQNW 952


>gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 899

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 112/709 (15%), Positives = 203/709 (28%), Gaps = 170/709 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQ--- 55
             + +D ET S   L             ++  +  +    D+        H    PQ   
Sbjct: 319 DVVALDTETTSLDPL----------HADLVGISCAWQAGGDYQAVYVPVGHRDAGPQLDR 368

Query: 56  -----VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-- 108
                 L+  LE+     +A N+ ++  V      +  P      TL+ +          
Sbjct: 369 QTVLTALRPWLEDPQAAKLAQNAKYDWRVFWRH-GIH-PAGLARDTLLESYVLNSSHNGH 426

Query: 109 -LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L  + E             + I      E         +            Y   D  V
Sbjct: 427 DLDTLAERY--------LQHQNIRY----EEVVGKGKSARNFADVPVAEALPYAAEDADV 474

Query: 168 TREIFKRLEPL-----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              +   L P               E  L  +   + + G  +D A    L+  +  +  
Sbjct: 475 CLRVDALLWPRFASEPGLRRVLMEIEMPLVLVLARMEEAGVKIDRAQLEVLSTELSRDMA 534

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272
             +Q+   L      +    ++++  LF +  L +   T     +T + VL+        
Sbjct: 535 DCEQKAFVLAGQS-FNLNSPKQIQEILFDKMRLPVLKKTPGGQPSTNEDVLAQLAVHADL 593

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              + + R   ++      + L + +N D GR+    Q   A+ TGR S      QN+P 
Sbjct: 594 PRLILDYR-GMAKLKNTYADALPQMINPDTGRVHTHFQQAVAA-TGRLSSNDPNLQNIPV 651

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +                              +R   +A EG  L+ AD + IE R+LA 
Sbjct: 652 RTEQGRR-------------------------IRQAFVAEEGHWLLSADYSQIELRILAH 686

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G+   L+AF  GED++  T A  F++AP  V    R   K +                
Sbjct: 687 LSGDARLLQAFAEGEDIHAVTAAEVFDLAPEDVDSAARRAAKAIN--------------F 732

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G      A  +  + A                              A  +    + 
Sbjct: 733 GLIYGQTPYGLAQQLGIDQA------------------------------AARQYMDRYF 762

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           +++  V E   +     ++                             +    GR L   
Sbjct: 763 ERYLGVLEYMAQTRALAKK--------------------------QGYVETLFGRRLYVP 796

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625
           ++ ++     T      R            +Q  + D++   M+              ++
Sbjct: 797 EIRSSNPARRTY---AERAAINAP------MQGTAADLIKMAMIAVDAWLQERPERGRMI 847

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDE++ E P+     A   L   M      A  +PL       K +
Sbjct: 848 LQVHDELILEVPEAGLEAAKSALKARMEGVAELA--VPLLVGLGIGKHW 894


>gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
 gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345]
          Length = 918

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 207/700 (29%), Gaps = 156/700 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP---- 54
           + ID ET S           Y E   ++  +F  +          HD       +     
Sbjct: 341 IAIDTETTSLN---------YME-AKLVGISFAVEAGKAAYLPLEHDYVDAPEQLDRALV 390

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110
            + L+  LE+ ++  V  N  ++ ++      + +   +   T++ +           + 
Sbjct: 391 FEKLQPLLEDENLKKVGQNLKYDISIFAN-IGITLRGVQ-FDTMLESYVFNSVASKHNMD 448

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +             G + I+     E       +    ++        Y   D  +T  
Sbjct: 449 DLALKY--------LGHKNISF----EEIAGKGVKQLTFNQIPLETAAPYAAEDADITLR 496

Query: 171 IFKRLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L     K  EL  +              I  +G  +D  L    ++ +  +  +L+
Sbjct: 497 LHQHLWSRLEKLPELASVFTDIELPLVNTLSNIERQGVLIDSMLLGQQSEELARKIDELE 556

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
            +   +      +    ++L+   F + G  +   T     +T + VL       P    
Sbjct: 557 HKAHEIAG-EPFNLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKI 615

Query: 276 VFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   ++      + L   +N   GR+  +     A+ TGR S      QN+P  + 
Sbjct: 616 ILEHR-SLAKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTE 673

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EGKK++ AD + IE R++A ++ 
Sbjct: 674 EGRR-------------------------IRHAFIAPEGKKILAADYSQIELRIMAHLSQ 708

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L AF  G+D++  T A  F+V  ++VT DQR   K +   L Y   A         
Sbjct: 709 DTGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSA-----FGLA 763

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L++         ++  + +     +    +    +        G          R   
Sbjct: 764 KQLDIPRAEAQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAM 823

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +A       G A    K+                               
Sbjct: 824 RR-----QAAERAAINAPMQGTAADIIKK------------------------------- 847

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                +  E   Q    +I+             +++ VHDE+V 
Sbjct: 848 ---------------AMINIAQWIETETQG---EII-------------MIMQVHDELVF 876

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E  +    +  + +  LM +       + L AE      +
Sbjct: 877 EVDEAKADSLQAKVCELMAAAAK--LDVELLAEAGIGDNW 914


>gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN]
 gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN]
          Length = 926

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 118/700 (16%), Positives = 212/700 (30%), Gaps = 155/700 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL----- 57
           + +D ET S  ++             ++  +F             H  P  P+ L     
Sbjct: 352 VALDTETTSLDEMR----------AEIVGISFSVQPGEAAYIPLAHTGPDAPEQLPLGEV 401

Query: 58  ----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111
               K  LE+     +  +  ++R V     ++D+  +    T++ +    +  P  L +
Sbjct: 402 LARLKPWLEDARYPKLGQHVKYDRHVFANH-DIDVRGY-VHDTMLQSYVLEVHKPHGLAS 459

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E           G+  I+     E          P  +        Y   D   T ++
Sbjct: 460 LAERH--------TGRTGISY----EDLCGKGAHQIPFAQVPVDKAAAYSCEDSDQTLDV 507

Query: 172 FKRLEPLSSKEQELWYL----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              L PL   + +L ++             I   G  +D       +  +     +L+ E
Sbjct: 508 HLALWPLLQADDKLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRILQLETE 567

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L    F + G+ +   T     +T + VL    +  P   ++ 
Sbjct: 568 AYEIAGQP-FNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLL 626

Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            +R   ++      + L +      GR+        A  TGR S      QN+P  +   
Sbjct: 627 EHR-SLTKLKGTYTDKLAQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPIRTAEG 684

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      VR   +A  G  +  AD + IE R++A ++G+ 
Sbjct: 685 RR-------------------------VREAFVAPPGCVIASADYSQIELRIMAHISGDH 719

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G D++  T A  F VA  QVT +QR   KV+   L Y               
Sbjct: 720 ALLHAFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIYGMS-----SFGLAKN 774

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L + T A     +   + +   + +    +         +   G          R     
Sbjct: 775 LGIETKAAAAYIDRYFQRYPGVKQYMDETKAQAKARGYVETVFGR---------RLYLPE 825

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           ++                                            P+G        G  
Sbjct: 826 INS-------------------------------------------PNGPRRA----GAE 838

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           R+ +N   +          KL    VQ        E  ++A K G  +++ VHDE+V E 
Sbjct: 839 RAAINAPMQG---TAADLIKLAMVAVQ-------KE--LDAHKPGIKMIMQVHDELVFEL 886

Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           P+ +       +  LM      A  +PL AE      + K
Sbjct: 887 PEGEVDWLRGHIPRLMAEVA--ALKVPLLAEVGVGANWDK 924


>gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
 gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1]
          Length = 936

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 200/700 (28%), Gaps = 164/700 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60
            ID ET S              +  ++  +  +                    P  L++ 
Sbjct: 366 SIDTETTSLN----------TFEAELVGISICWKPGEAYFIHFTDKELSAKTFPGKLQDV 415

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           LEN D+     N  ++  VLK       P+     T++ +          L  + +    
Sbjct: 416 LENPDIKKTGQNLKYDILVLKNHHVRLAPVG--FDTMLASYVINPEEKHNLDDLAK---- 469

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                   K L  R            +  P           Y   D  V  ++ ++ + L
Sbjct: 470 --------KHLNHRTITYSELTGTGKKAIPIREVPIDRLTVYACQDADVALQLEQKQKIL 521

Query: 179 S-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                       + E  L  +   +   G  +D A      + V+ +  +L + +   T 
Sbjct: 522 LGENSELEQLCVNIEFPLVEVLADMEYLGIALDTAQLERTAETVNRQLLELTERIYD-TA 580

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           G + +    ++L   LF   GL  +  T+   +T  +VL     + P A  +   R    
Sbjct: 581 GTIFNIDSPKQLGNVLFNVLGLPAKKTTKTGFSTNVQVLEDLSLIHPVAKDLLEYR-SLQ 639

Query: 285 RSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           +     ++ L + +N   GR+  +      + TGR S      QN+P  +    E     
Sbjct: 640 KLKTTYIDALPKILNPKTGRVHTSFNQHI-TATGRLSSSNPNLQNIPIRTPLGRE----- 693

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   I S   + L+ AD + IE R+ A ++ +   + AF
Sbjct: 694 --------------------IRKAFIPSTSDRYLLSADYSQIELRIAAEISQDSHLIDAF 733

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
              ED++  T    F+     +TKD R                          G+     
Sbjct: 734 RNREDIHTATAKTIFDT--DDITKDMRRKA--------------KEVNFGVLYGIQPYGL 777

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A                                        + +   +  K+     L++
Sbjct: 778 AQR------------------------------LNISQKEAKAIIDTYISKYPG---LFS 804

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            L     +  E G                            +GR     ++ +       
Sbjct: 805 ALQTTITEAAEKGYVTTL-----------------------TGRRRYIENLRSRN---RN 838

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET 636
                 R            +Q  + DI+   M      +   +    ++L VHDE+V ET
Sbjct: 839 IRMAAERAAMNTP------IQGTAADIIKCAMGLVSEAIKKKRMQSAMLLQVHDELVFET 892

Query: 637 PDTDEFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673
            + ++   + +    M         + +P++ E    K +
Sbjct: 893 TEEEKAALAEIAEGCMQKAAELCGLETVPVEVEIGTGKNW 932


>gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 956

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/716 (14%), Positives = 209/716 (29%), Gaps = 178/716 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
              ID ET               +   ++  +    D+        H             
Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
              +    K  LEN ++  +  +  ++  + K    ++I   +   T++ +         
Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             + A+ +              L  +    E       +     + A     +Y   D  
Sbjct: 478 HGMDALAKHY------------LGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDAD 525

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215
           +T  +F R     ++++    L   +              G  +D      L+   D + 
Sbjct: 526 ITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKI 585

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
             L  E E +      +    ++L   LF + G+     T+T    T + VLS      P
Sbjct: 586 MALQIEAERI-ADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKI--EHP 642

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               V  +R   S+      +TL  A +  GR+  +      + TGR S      QN+P 
Sbjct: 643 LIDVVLEHR-SLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNIPI 700

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            + +                            +R   IA +G+ ++ AD + IE R++A 
Sbjct: 701 RTDTGR-------------------------LIREAFIAPKGRMILAADYSQIELRLMAH 735

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G++  ++AF    D++  T A       ++VT  +R   K +   L            
Sbjct: 736 FSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLL----------- 784

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  ++ + A                                +   K + 
Sbjct: 785 ---YGMSAFGLAKQIEVDRAV------------------------------AQDYIKRYF 811

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++  + E         +Q                             +    GR L   
Sbjct: 812 ARYPAILEYMERTKTMAKQ--------------------------LGYVQTILGRKLYSP 845

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLT 627
           D+ ++   +        R             Q  + +I+   M+       K    ++L 
Sbjct: 846 DIQSSNRMIKDA---AERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLLQ 896

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPS-------WAKG--LPLKAEGYESKRY 673
           VHDE+V E   D      +++   M +  +       WA    +P   E    + +
Sbjct: 897 VHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPFVVEIGIGENW 952


>gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3]
 gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3]
          Length = 922

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/697 (14%), Positives = 196/697 (28%), Gaps = 152/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S   +             ++  +F  +          HD              
Sbjct: 346 AVDTETTSLDYMV----------AELVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTAL 395

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           + L+  LE+  +  V  N  ++ +VL     + +       T++ +      ++     G
Sbjct: 396 EKLRPLLEDAKIKKVGQNLKYDISVLANA-GIKLQ-GVVFDTMLESYVFNSIASRHDMDG 453

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    ++                +    ++        Y   D  +T  + +
Sbjct: 454 LALKYLGHKNIAFED----------IAGKGAKQLTFNQIPLETAAPYAAEDADITLRLHQ 503

Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L  +   I  +G  +D  L    +  +  +  +L+ + 
Sbjct: 504 HLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETKA 563

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+   F + G  +   T     +T + VL       P    +  
Sbjct: 564 YDIAG-EKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVILE 622

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   ++      + L   +N   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 623 HR-SLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 680

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 681 R-------------------------IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAG 715

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAF  G+D++  T A  F      VT +QR   K +   L Y   A           L
Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSA-----FGLARQL 770

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           ++         ++    +     +    + +  E        G      +   R    R 
Sbjct: 771 DIPRNEAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRR- 829

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   +A       G A    K+  + +    K      +                 
Sbjct: 830 ----QAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEI----------------- 868

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                                               M+          + VHDE+V E  
Sbjct: 869 -----------------------------------AMI----------MQVHDELVFEVD 883

Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                     +  LM         + L AE      +
Sbjct: 884 ADKAETLKLKVCELMAKAA--NLDVELLAEAGIGDNW 918


>gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
 gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755]
          Length = 942

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/706 (14%), Positives = 226/706 (32%), Gaps = 166/706 (23%)

Query: 1   MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMP 54
           M    +  D ET S   L          D  ++  AF ++ H         D      + 
Sbjct: 366 MKQNSVCFDTETTSLKTL----------DAELVGIAFSWESHKGFYVAFPEDQNEAQELV 415

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP--SALKA 111
           + L+   E+T++  V  N  ++  VL       + +      T++            +  
Sbjct: 416 EKLRPFFESTEIEKVGQNLKYDIKVLANY---KLKVKGPLFDTMLAHYIINPDMRHNMNI 472

Query: 112 VGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           + E  L  S Q +   ++LI +            R K     +     +Y   D  +T +
Sbjct: 473 LAETYLNYSPQPI---EDLIGK---------KGKRQKTMRTVSLEDQTQYAVEDADITFQ 520

Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +    E               E  L  +   +   G  +D +    +++ +D +  +L++
Sbjct: 521 LKTYFEKELKEASNEPLFKDMEIPLLRVLAAMEIEGINLDKSALENISEKLDEDIERLEK 580

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQ 275
            +  +      +    ++L   LF +  +      T++    T + VLS+  K      +
Sbjct: 581 SVY-VEAEGEFNIGSPKQLGEILFGKLEIAKKPKKTKSGQYSTGEEVLSNYAKDHKIVRE 639

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           V     + S+     ++ L + ++   +   T      + TGR S      QN+P  +  
Sbjct: 640 VL-EWRQLSKLKSTYVDALPKQIHPRTKRVHTEFMQTVAATGRLSSNNPNLQNIPIRTER 698

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394
             E                         VR   +   E   L+ AD + IE R++A ++ 
Sbjct: 699 GRE-------------------------VRKAFVPRDENYVLLAADYSQIELRIIAALSQ 733

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           E+  + AF+ GED++ +T AR F V   +VT+ QR+  K +   +               
Sbjct: 734 EKTMMNAFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTVNFGII-------------- 779

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    ++                                       + + + + + +
Sbjct: 780 YGVSAFGLSNQTD------------------------------LTRNESKELIETYYKTY 809

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            ++ +  +E  +  ++                          +  +    GR    +D+ 
Sbjct: 810 PKLRDYMDEQVEFAKE--------------------------HGYVKTVMGRRRYLKDIN 843

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
                + +   +               +Q  + DI+   M+N   A         ++L V
Sbjct: 844 AKNHIVRSAAERN---------AVNAPIQGSAADIIKVAMINIYDALEEQNFKSKMLLQV 894

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE++ +    +     +++   M +       +PL  E    + +
Sbjct: 895 HDELIFDAHKDEIDALTALVKDKMENAFK--LDVPLDVEMGTGQNW 938


>gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
 gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011]
          Length = 928

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 93/700 (13%), Positives = 208/700 (29%), Gaps = 159/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----L 57
             + +D ET              A +  ++  +F    +         D    +     +
Sbjct: 356 KEIALDTETTGLE----------AMEAEIVGISFSVKKNEAYYIPFPKDQEETKKRLNII 405

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K  LEN     +  N  ++  +LK    +++ + +   T++            +  + E 
Sbjct: 406 KPLLENKKSLKIGQNIKYDLLILKNY-GIEV-VGKLFDTMIAHYVVQPELRHNMDYLAEI 463

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               +      ++LI                K     +      Y   D  +T ++   +
Sbjct: 464 Y--LNHITIPIEDLIG---------PKGKNQKSMRELSPEDVYIYACEDADITFQLKNAI 512

Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E    + Q           L  +   +   G  +D     +L++        +++E+  L
Sbjct: 513 EKDLKENQAEELFYTIEMPLVPVLTDMEYTGVLLDKKALKSLSKDFTDRLITIEEEIHKL 572

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +  +   T+T    T + VL S K   P   ++ + R
Sbjct: 573 ADND-FNVSSPKQVGEILFDKLKIDEKAKKTKTGQYVTSEEVLLSYKDKHPIVEKILDYR 631

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L + +N       T      + TGR S      QN+P      +E  
Sbjct: 632 -GLKKLLSTYVDALPKLINKKTGKIHTSFNQTVTATGRLSSSNPNLQNIPIRDSDGKE-- 688

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I  +      AD + IE R++A ++ +   ++
Sbjct: 689 -----------------------IRKAFIPDQDSLFFSADYSQIELRIMAHLSHDNNMME 725

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A+ +      +T DQR   K                      G+++ 
Sbjct: 726 AFLHGDDIHAATAAKVYKQDINTITSDQRRKAKTANF--------------GIIYGISVF 771

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  ++                                    + + + + + + +V E 
Sbjct: 772 GLAERMQVE------------------------------RKEAKELIEGYFETYPQVKEY 801

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            ++      +                             +     R     D+ +  + +
Sbjct: 802 MDQSIVEARE--------------------------KGYVETIFNRKRYLPDINSRNAVV 835

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
              +    R            +Q  + DI+   M+N  K          ++L VHDE+  
Sbjct: 836 RGFS---ERNAINAP------IQGSAADIIKVAMVNIHKRFKEEKLLSKMILQVHDELNF 886

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               +++     +    M +   +   +PLKA+    + +
Sbjct: 887 TVIPSEKEKVQQIVIQEMENA--YKLSVPLKADFGWGENW 924


>gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425]
 gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425]
          Length = 982

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/700 (14%), Positives = 218/700 (31%), Gaps = 147/700 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVHDPV-------MPQVL 57
           D ET +              D  ++     +   P  +      H            + L
Sbjct: 395 DTETTALSP----------RDAQLVGIGCCWGPAPDQIAYLPLGHSQGGNLDLTLALEQL 444

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           +  LE+        N+ ++R VLK    + +       T++ +       +      + K
Sbjct: 445 RPLLEDARYPKAFQNTKYDRLVLK-FQGVHLQ-GVVFDTMLASYVLNPEGSHNLTDLSRK 502

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 +   +L+             ++ +     +      YC  DV  T ++  +L  
Sbjct: 503 YLDITAQSYTDLV-------------EKGQNLADLSVEAIANYCGLDVYATFQLVPKLRA 549

Query: 178 LS------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                         + EQ L  +   +   G  +D      L+Q ++ +   L++    L
Sbjct: 550 DLLDANPKLLDLLLTVEQPLEPVLAIMETCGIRIDQDYLKQLSQQLEQDLHALEERAYGL 609

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +    ++L   LF +  L ++    T+   +T    L   +   P    +  +R
Sbjct: 610 AG-ETFNLGSPKQLSELLFNKLKLDVKKSRKTKLGYSTDAATLEKMQGDHPVIDLILEHR 668

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
              ++     ++ L   + SD GR+         + TGR S      QN+P  +      
Sbjct: 669 -TLAKLKSTYVDALPNLVRSDTGRVHTDFNQAI-TATGRLSSSNPNLQNIPIRTE----- 721

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                S  +R   I   G  LV AD + IE R+LA ++ E   +
Sbjct: 722 --------------------FSRQIRKAFIPEPGWMLVTADYSQIELRILAHLSQEPRLV 761

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +A++  +D++  T      +    +  ++R + K++   + Y  GA   Q+ A  +G++ 
Sbjct: 762 EAYQQHQDVHKLTAQLL--LEKEDINPEERRLAKIINFGVIYGMGA---QRFARESGVSF 816

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    +   E +     + + M+         +  +G       + +         
Sbjct: 817 --KQAKGFIDRFYERYPLVFRYLKQMEGQAIALGYVETLLGR------RRYFS------- 861

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                         +  ++   L    P        ++  ++  
Sbjct: 862 ------------------------------FDSRELQQLRGKDPD----SLAELDLSQLK 887

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635
           ++   R   R            +Q  S DI+   M+   +        ++L VHDE+V E
Sbjct: 888 VSQYDRGQLRAAANAP------IQGSSADIIKVAMIKLQQRLQPYQTRLLLQVHDELVFE 941

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            P ++     S++   M         +PL AE +    + 
Sbjct: 942 MPPSEWEPLRSLIQATMAEAVP--LSIPLLAEIHAGPNWM 979


>gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000]
 gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000]
          Length = 982

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 194/715 (27%), Gaps = 176/715 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51
           +  D ET +                 +   +              H              
Sbjct: 395 VAFDTETDALSS----------ATAGLCGVSLAIAPGEACYIPISHCEKADGLAFEAPAD 444

Query: 52  -------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                   +   LK  LE+  V  VA N+ ++  VL       I +     T++++    
Sbjct: 445 IEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH---GIQVAPIEDTMLISYVLE 501

Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E        +  G + I      +               A      Y 
Sbjct: 502 AGLHGHGMDELSE--------LHLGHKPIPF----KQVAGSGKGQISFKHVALPEATAYA 549

Query: 162 KGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  ++  L+P  ++          E+ +  +   + + G  VD      L+   
Sbjct: 550 AEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRLLSNEF 609

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
            +   + +   + L      +    +++   LF E  +     T     +T   VL S  
Sbjct: 610 SLRMAQFEARAQELVGRP-FNLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDVLESLA 668

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   + + R   S+        L+ A+        T   L A+ TGR S      Q
Sbjct: 669 LEHELPRVLLDWRQ-LSKLKGTYTENLIAAIAPSTGRVHTSYALAATTTGRLSSSDPNLQ 727

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R   +A+ G  L+ AD + IE R
Sbjct: 728 NIPVRTEEGRK-------------------------IRKAFVAAPGHVLISADYSQIELR 762

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +       KAF+ G D++  T +  F+     +    R   K +            
Sbjct: 763 LLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAIN----------- 811

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++                                  A +            
Sbjct: 812 ---FGIVYGIS------------------------------AFGLANQLGISQGEAGAYI 838

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           K + ++   +    +       +                          +  +    GR 
Sbjct: 839 KTYFERFPGIQAYMDATKAFVRE--------------------------HGYVTTIFGRK 872

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY- 622
           +   D+    +          R            +Q  + D++   M+        AG  
Sbjct: 873 INIPDIEAKSAAHRQF---AERAAINAP------IQGAAADVMRRAMIRMPVALEAAGLS 923

Query: 623 -DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE+V E P+ +   A  +   +M     P+ A  +PL  E   +  +
Sbjct: 924 TRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPLTVEARAASNW 978


>gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21]
 gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21]
          Length = 944

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/712 (15%), Positives = 201/712 (28%), Gaps = 165/712 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
             + +D ET S   +             ++  +     +        H            
Sbjct: 356 RLVAVDTETTSLDCMLC----------DLVGVSLATGPNQACYIPLGHGGSDMFAEKPQQ 405

Query: 52  ----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
                    LK  LE+  V  V  N  ++  VL       I +     T++++ +     
Sbjct: 406 IGKAEALAALKPLLEDDAVLKVFQNGKYDLNVLAR---EGIAVAPIDDTMIISFALDAGR 462

Query: 108 ALKAVGEALKLSSQKM-EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
           +   +G    +        G   I+     +       +  P          EY   D  
Sbjct: 463 SESGIGGGHGMDELAERHLGHPCISF----KELCGTGRKAIPFAEVPLDKATEYAAEDAD 518

Query: 167 VTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           VT  +   L+               ++ L  +   +   G  VD A    L++    E  
Sbjct: 519 VTWRLHAMLKRRLPVEGGTKIYERVDRPLVPVVAGMERHGIKVDRARLAKLSEEFATETK 578

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKLTPQ 272
           +L+ E+  +      +    ++L   LF + G            +T Q VL        +
Sbjct: 579 RLEGEIHEIAGQ-EFTVGSPKQLGEILFDKLGFKGGKKGKSGQYSTDQSVLEKLSGDGAE 637

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
                    + ++      + L EA+N       T   L  ++TGR S      QN+P  
Sbjct: 638 IAAKVLEWRQLAKLKSTYTDALQEAINPRSGRVHTSYSLVGAQTGRLSSTDPNLQNIPIR 697

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R   +A EG  L+ AD + IE R+ A M
Sbjct: 698 TEIGR-------------------------QIRDAFVAEEGNVLLAADYSQIELRLAAHM 732

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A      +AF  GED++  T    F     +VT+D RA  K +  A+ Y        +  
Sbjct: 733 ADVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGIS-----RWG 783

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               L +                                            + +   + +
Sbjct: 784 LAGRLGVEA---------------------------------------DEAQAMIDTYFK 804

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +   + +      +   +                                  GR   +  
Sbjct: 805 RFPGIQKYILHTLEYVRE--------------------------KGYSETLFGRKTWFPR 838

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY---DIV 625
           + +        +    R            +Q  S DI+   M+       +AG     ++
Sbjct: 839 INSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMVRMNSALEEAGLGHVRML 889

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674
           L VHDE+V E P+ D   A +++  +M     P     +PL  E    K + 
Sbjct: 890 LQVHDELVFELPEADVAAASAIIERVMAGAAQPYVELSVPLGVEIGTGKSWG 941


>gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336]
 gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336]
          Length = 951

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 101/722 (13%), Positives = 206/722 (28%), Gaps = 178/722 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------- 50
             + +D ET +   +             ++  +F   +         H            
Sbjct: 354 DLIAVDTETDALDPMR----------ANLVGISFALTNGEACYIPLAHKQAVKEMTQTDL 403

Query: 51  --------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
                                     LK  LEN  +  +  N  ++ T+        I +
Sbjct: 404 FTESEQNAEQFELVKNQLNKETCLAQLKPLLENPSIQKIGQNIKYDLTIFANHH---IQL 460

Query: 91  HRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +     T++ +          + A+ E           G ++I      E+      +  
Sbjct: 461 NGVCFDTMLQSYVLDSTGRHNMGALSERY--------LGHQVIEF----ESIAGKGKKQV 508

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRG 196
              + A     EY   D  +T ++ + L     +           E  L  +  T+   G
Sbjct: 509 TFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSTMERNG 568

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LE 252
             +D       ++ +    T L+Q++         +    ++L+  LF +  L       
Sbjct: 569 VLIDSQALLKQSEKIARRLTALEQQVYQEAG-AEFNLASTKQLQEILFTKLALPIIAKTP 627

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
               +T + VL +  +      ++       ++      + L   +N       T     
Sbjct: 628 KGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTSYHQA 687

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  +                             C+R   IA +
Sbjct: 688 VTATGRLSSSDPNLQNIPIKNEEGR-------------------------CIRQAFIARK 722

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G K++ AD + IE R++A ++ +   + AF  G+D++ +T A  F +   +VT +QR   
Sbjct: 723 GYKIIAADYSQIELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSA 782

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   L Y            +  L ++        +   + +   + F   ++E   E 
Sbjct: 783 KAINFGLIYGMS-----SFGLSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQ 837

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
              +   G          R     ++        A  +      AI A  +     +   
Sbjct: 838 GYVETLFGR---------RLYLPEINS-----SNAIRRKGAERVAINAPMQGTAADII-- 881

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                          L    + N                        N +Q         
Sbjct: 882 --------------KLAMIAIHNEIKK--------------------NDIQ--------- 898

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESK 671
            M+          + VHDE+V E  +      ++++  LM +       +PL  +     
Sbjct: 899 -MI----------MQVHDELVFEVKENKVDEYSALIKSLMENAAH--LSVPLIVDIGVGD 945

Query: 672 RY 673
            +
Sbjct: 946 NW 947


>gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
 gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/698 (15%), Positives = 199/698 (28%), Gaps = 156/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
            +D ET S            A    ++  +   +          H             + 
Sbjct: 346 AVDTETTSLE----------AMQAELVGISLCCEPGRAAYIPVAHNYQDAPVQLSRQHVL 395

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
           + LK  LE+     +  +  ++  +      + +   +   TL+ +       P  + ++
Sbjct: 396 EKLKPWLEDASKPKLGQHLKYDSHIFANY-GVRLAGVK-HDTLLESYVFESHRPHDMDSL 453

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                           L  +                 +  A     EY   D  VT  + 
Sbjct: 454 AARH------------LERKTITYAEVCGKGASQIGFNEVAIERATEYAAEDAEVTLALH 501

Query: 173 KRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + + P    +                + Q I   G  +D       +  +     +++Q+
Sbjct: 502 QAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLIDSERLGQQSHDLGKRMLEIEQQ 561

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
              L      +    ++L   LF +  L +   T     +T + VL    +  P    + 
Sbjct: 562 AYDLAGQP-FNLNSPKQLGEILFGKLELPVVKKTASGAPSTDEEVLQKLAEDYPLPKVLL 620

Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
           + R   ++      + L + +N   GR+        A  TGR S      QN+P  +   
Sbjct: 621 DYR-GLAKLKSTYTDKLPKMVNPATGRVHTNYAQAVA-VTGRLSSNDPNLQNIPIRTAEG 678

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   +A EG  +V AD + IE R++A ++ ++
Sbjct: 679 RR-------------------------IREAFVAPEGSVIVSADYSQIELRIMAHISEDE 713

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF   ED++  T A  F +AP QV  +QR   KV+   L Y   A         + 
Sbjct: 714 NMLKAFANNEDIHRATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSA-----FGLASN 768

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +   A  +  +     +   + +    +         +   G                
Sbjct: 769 LGIERAAAQMYIDKYFMRFSGVKRYMDETRLQAKARGYVETVFGR--------------- 813

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
              LW                                      +  P+G      +    
Sbjct: 814 --RLW-----------------------------------LPEINSPNGPRRQGAERAAI 836

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
            + +  T   L +            VQ    D      +        +++ VHDE+V E 
Sbjct: 837 NAPMQGTAADLIKMAMIA-------VQ----DW-----LETNSLQTRMIMQVHDELVLEV 880

Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           P  +       L  LM +       +PL AE    K +
Sbjct: 881 PQQELEMVREKLPELMKNVAE--LKVPLLAEVGIGKNW 916


>gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
 gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110]
          Length = 931

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/704 (15%), Positives = 212/704 (30%), Gaps = 166/704 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----DPVMPQVL 57
                D ET S   L          D  ++  +F F         C           +VL
Sbjct: 358 KEFAFDTETTSLTTL----------DAELVGISFSFAPGEAFFVYCAESALSRETAIRVL 407

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           K  LEN ++  +  N  ++  VLK    + +   R   T++ +          L  +   
Sbjct: 408 KPILENPEIGKIGQNLKYDMLVLKNY-GVRVQPVR-FDTMLASYVLNPDKTHNLDDLAAD 465

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                        L     K           K  +    +   +Y   D  V  ++   L
Sbjct: 466 H------------LGLETVKYADLVGKGKSEKSIYEVEPKTLSDYACQDADVALQLKNVL 513

Query: 176 EPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           E    + + L  +              +   G  +DVA+  TL++ +  E  ++ + +  
Sbjct: 514 EKALGENEPLKKICEELEFPLVGVLADMEHEGVRLDVAVLKTLSETLGTELGRVSKIIYD 573

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
                  +    ++L   LF +  L  +  T+   +T  RVL    +  P A Q+   R 
Sbjct: 574 AAG-EAFNLDSPKQLSEILFEKLKLPAKRRTKTGYSTDVRVLEELAESFPVAKQILEYR- 631

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L   ++   GR+  +     A+ TGR S      QN+P  +    E  
Sbjct: 632 SLQKLKSTYVDALPNLVHPKTGRIHTSFNQHIAA-TGRLSSSNPNLQNIPIRTEIGRE-- 688

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  +R   + S+    L+ AD + IE R+ A ++G+   L
Sbjct: 689 -----------------------IRGAFVPSDAHHTLLSADYSQIELRIAAELSGDPTML 725

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+  ED++ TT    F     +VTKD R   K +                    G+  
Sbjct: 726 GAFQNREDIHSTTAKLIF--ETDEVTKDMRRKAKEVNF--------------GVLYGIMP 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  + A                                + +   +++K+  +  
Sbjct: 770 FGLAQRLDISQA------------------------------EAKEIISQYKEKYPMIFS 799

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               +                                +  +    GR    RD+ +    
Sbjct: 800 YLEGILDKAR--------------------------ASGYVETLLGRRRYIRDLNSKNFS 833

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATK--AGYDIVLTVHDEIV 633
           + +      R            +Q  + D++ + M+    +  K      ++L VHDE++
Sbjct: 834 IRSA---AERAAINTP------IQGTAADMIKKAMLGIASDIHKQSLRSRMILQVHDELL 884

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKG---LPLKAEGYESKRY 673
               +++      L    M      A G   +P++ E      +
Sbjct: 885 FNMHESEVDILPELVQREMIEAAK-AIGIRNVPIEVEVGTGANW 927


>gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15]
 gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15]
          Length = 967

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 194/715 (27%), Gaps = 176/715 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51
           +  D ET +                 +   +              H              
Sbjct: 380 VAFDTETDALSS----------ATAGLCGVSLAIAPGEACYIPISHCEKADGLAFEAPAD 429

Query: 52  -------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                   +   LK  LE+  V  VA N+ ++  VL       I +     T++++    
Sbjct: 430 IEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH---GIQVAPIEDTMLISYVLE 486

Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E        +  G + I      +               A      Y 
Sbjct: 487 AGLHGHGMDELSE--------LHLGHKPIPF----KQVAGSGKGQISFKHVALPEATAYA 534

Query: 162 KGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  ++  L+P  ++          E+ +  +   + + G  VD      L+   
Sbjct: 535 AEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRLLSNEF 594

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
            +   + +   + L      +    +++   LF E  +     T     +T   VL S  
Sbjct: 595 SLRMAQFEARAQELVGRP-FNLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDVLESLA 653

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   + + R   S+        L+ A+        T   L A+ TGR S      Q
Sbjct: 654 LEHELPRVLLDWRQ-LSKLKGTYTENLIAAIAPSTGRVHTSYALAATTTGRLSSSDPNLQ 712

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R   +A+ G  L+ AD + IE R
Sbjct: 713 NIPVRTEEGRK-------------------------IRKAFVAAPGHVLISADYSQIELR 747

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +       KAF+ G D++  T +  F+     +    R   K +            
Sbjct: 748 LLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAIN----------- 796

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++                                  A +            
Sbjct: 797 ---FGIVYGIS------------------------------AFGLANQLGISQGEAGAYI 823

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           K + ++   +    +       +                          +  +    GR 
Sbjct: 824 KTYFERFPGIQAYMDATKAFVRE--------------------------HGYVTTIFGRK 857

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY- 622
           +   D+    +          R            +Q  + D++   M+        AG  
Sbjct: 858 INIPDIEAKSAAHRQF---AERAAINAP------IQGAAADVMRRAMIRMPVALEAAGLS 908

Query: 623 -DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE+V E P+ +   A  +   +M     P+ A  +PL  E   +  +
Sbjct: 909 TRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPLTVEARAASNW 963


>gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 579

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 208/581 (35%), Positives = 314/581 (54%), Gaps = 21/581 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP  LK   ++
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63

Query: 64  TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SS 120
           +++  V HN   F+  +LK   N+D+P+ R   TLV A ++GLP AL  + +   +    
Sbjct: 64  SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123

Query: 121 QKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K +EGK LI+  CK         R     H E W+ F +Y   D+   REI++ L   +
Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   +
Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
            L   +    G+ L D+  +T QR ++    + P   ++ + R+++  ++  K   L+++
Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQSCTTSTSKYKALLKS 302

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPD 355
           +++DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D
Sbjct: 303 VSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDD 362

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YV 410
            +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF   ++      Y 
Sbjct: 363 IMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYK 422

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
             YAR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     + 
Sbjct: 423 LAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHI 482

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
            P    +A ++ +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q
Sbjct: 483 PPGVKREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQ 541

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            I++       ++     + +++DK  L + LPSGRSL Y 
Sbjct: 542 AIQSPGIAFKCRK-----LSVRRDKGWLRICLPSGRSLCYP 577


>gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia
           stuttgartiensis]
          Length = 887

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 95/702 (13%), Positives = 194/702 (27%), Gaps = 164/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQV 56
            ID ET     L             ++  +F ++         +            +   
Sbjct: 316 AIDLETTGTDPLK----------AHIVGLSFSWEQKEAYYVPLMAPENTRHLTADIVLPE 365

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVG 113
           +++ LE+     +  N  ++  VLK   N+ +    +  +++ +           L  + 
Sbjct: 366 IRKVLEDESKKKIGQNIKYDLLVLKKH-NIGLKGI-YFDSMIASYLLNPAKRNHNLDDIA 423

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                 S K     ELI              +     +       +Y   D  +T  + +
Sbjct: 424 FEY--LSYKTIMIAELI----------GSGKQQITMDKVPVDKVCQYACQDADITFRLAE 471

Query: 174 RLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            + PL             E  L Y+   +   G C++      ++  +  +   L++E+ 
Sbjct: 472 TMAPLLKKEGLWQLFQEIEIPLIYVLAEMEGNGICINADFLRQMSGDLAAQLQCLEKEIY 531

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
            +      +    ++L   LF +  L     T+   +T   VL+S     P        R
Sbjct: 532 RV-AEQEFNISSHKQLGAILFDKFQLPKLRRTKTGVSTDANVLASLAWRHPLPKLALEYR 590

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L   +N D     T      + TGR S      QN+P  +       
Sbjct: 591 Q-LAKLKSTYADALPNLLNQDTGKIHTTFNQTVTSTGRLSSSNPNLQNIPVKT------- 642

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                              I   +R   I S +    + AD + IE R+LA  + +   +
Sbjct: 643 ------------------DIGKQIRRAFIPSGKNAVFLSADYSQIELRILAHFSEDTALM 684

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF    D++    +  ++V    VT + R   K +                    GLN 
Sbjct: 685 EAFREDLDIHAAVASSIYHVPLENVTTEMRRNAKAINF--------------GIIYGLNE 730

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              +                               +        +    A+   +  V E
Sbjct: 731 YGLS------------------------------RDTGLSLNDAKDFIDAYFTLYQGVRE 760

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             +++ +  ++                             +     R     D+      
Sbjct: 761 FRDKVVEEAKE--------------------------MGYVKTLFNRKRAIPDINAKN-- 792

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                    R           I+Q  + D++   M N             ++L +HDE++
Sbjct: 793 -KRFRNLAERIAI------NTIIQGSAADLIKVAMNNIYSKLKCGDYEARMLLQIHDELL 845

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
            E          ++    M    +    +P+K      K + 
Sbjct: 846 FEVGVQALEQTRIMVQEEMGHAVT--LRVPVKVNIKTGKNWM 885


>gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901]
 gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901]
          Length = 908

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 114/696 (16%), Positives = 206/696 (29%), Gaps = 151/696 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +          D  ++  +F  +          HD            + 
Sbjct: 333 AFDTETTSLNYM----------DAEIVGVSFAVEPGKAAYVPVAHDYLGAPEQLSREHVL 382

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LEN  +  V  N  ++  VL    ++ +    +  T++ +  +    +      
Sbjct: 383 ARLKPLLENDGLKKVGQNLKYDANVLANY-DIALKGIAY-DTMLESYVHNSTGS------ 434

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + E   L  +    E       +    ++      G Y   D  +T  + + 
Sbjct: 435 --RHDMDTLAELH-LGHKTIHFEDIAGKGAKQLTFNQIKLEEAGPYAAEDADITLRLHQA 491

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P            +  E  L  +   I   G  +D  L   L+        KL++E  
Sbjct: 492 LWPKVAEAEGLKTVFNDVELPLVSILSRIERNGALLDTKLLGELSLQHGASIVKLEKEAY 551

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L T LF +  L +   T     +T + V+       P    +  +
Sbjct: 552 ELAG-EEFNLGSPKQLATILFEKMNLPVVKKTAKGAPSTNEEVMQELALDYPLPSVILQH 610

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N   GR+  +     A+ TGR S      QN+P  +     
Sbjct: 611 R-SLSKLKSTYTDKLPTMVNKKTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPIKTDEGRR 668

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA  G K+V AD + IE R++A ++ +   
Sbjct: 669 -------------------------IRQAFIAPAGYKMVAADYSQIELRIMAHLSNDPGL 703

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            KAF  G D++ +T A  F  A   V+ +QR   K +   L Y   A           L 
Sbjct: 704 QKAFAEGLDVHKSTAAEVFGTALENVSSEQRRSAKAINFGLIYGMSA-----FGLARQLR 758

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +         ++  E +     +   ++++  E    +                      
Sbjct: 759 IGRNDAQTYIDTYFERYPGVAEYMANIRKSAAEKGYVETL-------------------- 798

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                  +R  +P +                R      V  N  
Sbjct: 799 ---------------------LGRRLYLPEINSSNGM----------RRQAAERVAINAP 827

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET-P 637
              T    + R                  D+  +  +   +    I++ VHDE+V E   
Sbjct: 828 MQGTAADIIKRAMI---------------DV--DAWLQTEQIDARIIMQVHDELVLEVAA 870

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              E  ++ L  +M+S       +PL  E      +
Sbjct: 871 ADAEAISAKLCDIMSSAV--VLSVPLLVEAGIGDNW 904


>gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370]
          Length = 994

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 110/718 (15%), Positives = 194/718 (27%), Gaps = 181/718 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------- 52
           + +D ET S +D         A    ++  +              H              
Sbjct: 408 VAVDTET-SALD---------AVGADLVGISLATGPGAACYIPLGHGNTTDMFAERPRQI 457

Query: 53  ----MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---- 104
                  +LK  LE+  V  V  N  ++ TVL       I +     T+V++        
Sbjct: 458 DKARALALLKPLLEDDSVLKVGQNIKYDLTVLARH---GIAVAPIDDTMVMSFCLDAGRG 514

Query: 105 ----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E           G   I    K +       +              Y
Sbjct: 515 EPMPFGHGMDELAERH--------LGHTTI----KFKDVAGTGKKAISFAEVPLPDATRY 562

Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  +   L P              ++ L  +  T+   G  VD     TL+  
Sbjct: 563 AAEDAEVTWRLHAVLAPRLAEEGGTRIYQRVDRPLVQVIATMEGHGIKVDRERLATLSGE 622

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSN 266
                  L+  +         +    ++L   LF + G            +T Q VL + 
Sbjct: 623 FATRIAALESVIHEKAGTT-FTIGSPKQLGEVLFDKLGYKGGKKGKSGQYSTDQSVLETL 681

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                +   +     + S+      + L  A+N       T   L  ++TGR S      
Sbjct: 682 ASQGAEVATLVLEWRQLSKLKSTYTDALQAAINPATGRVHTSYSLVGAQTGRLSSNDPNL 741

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +                              +R   +A  G  L+ AD + IE 
Sbjct: 742 QNIPVRTEIGR-------------------------QIRDAFVAEPGHVLLSADYSQIEL 776

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+ A +A      +AF  GED++  T    F     +V +D R   K +  A+       
Sbjct: 777 RLAAHIADVPALREAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAIL------ 826

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A          + +
Sbjct: 827 --------YGIS------------------------------RWGLATRLGTSADEAQAM 848

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + ++   +    +E  +                                      GR
Sbjct: 849 IDRYFERFPGIQRYIHETLEHVRD--------------------------RGYSETLFGR 882

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGY 622
              +  + +        +    R            +Q    DI+   M   T    +AG 
Sbjct: 883 KTWFPRIASKTQAERAGS---ERAAINAP------IQGTCADIIKRAMARMTPALVEAGL 933

Query: 623 ---DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEGYESKRYR 674
               ++L VHDE+V E P++D   A +++  +M +    A    +PL  E      + 
Sbjct: 934 GHVRMLLQVHDELVFELPESDVAAASAVIERVMATAAEPAVKLSVPLGVEIGTGPSWG 991


>gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 1009

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/709 (15%), Positives = 223/709 (31%), Gaps = 157/709 (22%)

Query: 7    DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHD-------PVMPQVL 57
            D ET +              D  ++     +             H         ++ + L
Sbjct: 414  DTETTALEP----------RDAELVGIGCCWGTGEADLAYIPTGHKTGQNLDKAIVLEAL 463

Query: 58   KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG---E 114
            +  LE+ +      N+ F+R +L  C  + +       T++ +       +        E
Sbjct: 464  RPILEDNNYPKALQNAKFDRLIL-RCQGIKLA-GVVFDTMLASYVIDPEGSHNLTALCKE 521

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             L+      +  K+L++             + +     A  +   YC  DV  T ++  +
Sbjct: 522  YLEDPKLTAKSYKDLVS-------------KEQTIADLAIPIVANYCGMDVYTTFQLVSK 568

Query: 175  LEPLSSK------------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            L     +                  EQ L  +   +  +G  ++    + L+Q ++ +  
Sbjct: 569  LREKLEELDAEKPLTASLEQLLIKVEQPLEPVLAQMEYKGIRINTEYLNELSQELENKLQ 628

Query: 217  KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271
             ++Q    +      S    ++L   LF    L ++         +T   VL   +    
Sbjct: 629  LIEQTAYEVAG-EEFSLSSPKQLSKLLFETLKLDIKKSRRIQSGYSTDAAVLEKLQDDHE 687

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                +  +R   S+     ++ L + +  D GR+        A+ TGR S      QN+P
Sbjct: 688  VVKTILEHR-TLSKLKSTYVDALPQLVRPDTGRVHTDFNQA-ATGTGRLSSSNPNLQNIP 745

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              +                           S  +R   +  EG  +V AD + IE R+LA
Sbjct: 746  IRTE-------------------------FSRQIRKAFLPKEGWLMVSADYSQIELRILA 780

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
             +  E   ++A++T +D++  T    F      VT D+R +GK +   + Y  GA+ F +
Sbjct: 781  HLTQEPVLVEAYKTNQDVHTVTAKLLF--EKETVTPDERRLGKTINFGVIYGMGAQRFAR 838

Query: 451  MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                    ++     +      + +     +   ++++          +G       + +
Sbjct: 839  SVE----GVSPTQAKLFIERFNQRYSRVFEYLNRVKKDAIAQGYVSTILGR------RRY 888

Query: 511  RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
             +                      G+++   K  DV  + +   KN              
Sbjct: 889  FK--------------------FEGESVRKLKDSDVQDINLATLKN-------------- 914

Query: 571  RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVL 626
                     +     QL R            +Q  S DI+   M+            ++L
Sbjct: 915  ---------IGQNDAQLLRAAANAP------IQGSSADIIKVAMVKLHDILKDRQARLLL 959

Query: 627  TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             VHDE+V E P  +       + + M +       +PL  + +  + + 
Sbjct: 960  QVHDELVLEVPPDEWEELQHKIKNTMENAVE--LSVPLVVDIHAGQNWM 1006


>gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602]
 gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602]
          Length = 934

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/698 (15%), Positives = 203/698 (29%), Gaps = 154/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     LT            +I  +F  +          HD            + 
Sbjct: 358 AFDTETDGLDTLT----------ANLIGLSFATEAGKAAYLPVAHDYLDAPVQLDRDEVL 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           + LK  LE+     V  N  F+R VL    ++++       T++ +           + +
Sbjct: 408 KQLKPILEDEKQLKVGQNLKFDRGVLLRY-DIELKGIA-FDTMLESYVLDSVSGRHDMDS 465

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + ++     E            ++ A      Y   D  VT ++
Sbjct: 466 LADRY--------LGHKTVSF----EEIAGKGKNQLTFNQIALEQAAPYAAEDADVTLQL 513

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   I   G  +D  +    ++ + +   +L+ 
Sbjct: 514 HQALWPRIAESESLKTVFTDIEMPLVPVLSHIERTGVLIDQNILAAHSKELAIRLNELEN 573

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 574 KAHEL-AEEPFNLSSTKQLQAILYEKQKLPILKKTPGGAPSTNEEVLAELALDYPLPKVI 632

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 633 LEYR-GLAKLKSTYTDKLPLMINPQSGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 691

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA +   ++ AD + IE R++A ++ ++
Sbjct: 692 RR-------------------------IRQAFIAPKDYIILAADYSQIELRIMAHLSKDE 726

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF  G+D++  T A  F     +V+ +QR   K +   L Y   A        +  
Sbjct: 727 GLLKAFAEGKDIHRATAAEVFGTPLEKVSGEQRRSAKAINFGLIYGMSA-----FGLSRQ 781

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           LN+         +   E +     +    +    E    +   G               R
Sbjct: 782 LNIPRKESQRYMDLYFERYPGVLEYMERTRTQASEQGYVETLDGRRLYLPDIKSSNAMRR 841

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +A       G A    KR  + +    K  +                    
Sbjct: 842 -----KGAERAAINAPMQGTAADIIKRAMISVADWLKQPDAPR----------------- 879

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                        +R I+                 VHDE+V E 
Sbjct: 880 -----------------------------ARIIM----------------QVHDELVFEV 894

Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              D   A   + +LM ++ + A  +PLK +    + +
Sbjct: 895 HKDDVEVASEKIRNLMEASMTLA--VPLKVDVGTGENW 930


>gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
 gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066]
          Length = 940

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 100/711 (14%), Positives = 199/711 (27%), Gaps = 173/711 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S             ED  ++  +F  ++         H             + 
Sbjct: 359 AFDTETTSLHP----------EDCTLVGVSFSVEEKEAFYLPLAHAYLGAPVQLAKDDVF 408

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAV 112
             L     +  +  + HN  F+  VL     L      +  T+++A       +  L  +
Sbjct: 409 AKLAPVFADPKIKKIGHNVKFDLLVL-YFAGLSAVKGVYADTMLMAHLLDSVQSCALDNL 467

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E            K L  +  K         ++         +   Y   D  V   +F
Sbjct: 468 AE------------KYLSYKTIKYSDVAGSGSKSVTFDNVPVDIACAYSGEDSEVALRLF 515

Query: 173 KRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             L P    E                +   +   G  V     +   +++  E   + ++
Sbjct: 516 NVLLPKIKDEGKANDILFNLEMPCLSVLFDMERVGALVSADELYRQTEVLKSELQAVQKD 575

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---------TTCQRVLSSNKKLTPQ 272
           + +       +    ++L   LF    +      +         +T + VL+    +   
Sbjct: 576 IYAAAGQ-EFNIASPKQLGNVLFESLAIPYPKKVKVDKNGNKQYSTAEDVLTEIAPMYDI 634

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
           A  V   R   S+        L   ++   GR+  +    G + TGR S      QN+P 
Sbjct: 635 ANLVLRFR-SVSKLIGTYTEKLPLLISKRTGRIHTSFNQAGTT-TGRLSSSDPNLQNIPA 692

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +   +                          +R   IA +G  LV AD + IE R++A 
Sbjct: 693 RTHEGK-------------------------LIRKAFIAPQGYTLVSADYSQIELRLIAH 727

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A +   +KAF+ G D++  T A        +VT ++R+  K     L            
Sbjct: 728 IAKDPNLIKAFKLGYDIHKATAAEVLGKDINEVTGEERSRAKATNFGLM----------- 776

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                                                    + +      A +     + 
Sbjct: 777 ---------------------------------YGMGAHGLSAQTGLSFKAAKAYIDCYF 803

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++ ++ +  + + +   +                          +  +    GR + + 
Sbjct: 804 TRYPKIRDYMDSIKKFAHE--------------------------HGYVETILGRRIDFP 837

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDI 624
            + +             R            +Q  + DI+   M+   K           +
Sbjct: 838 GINSTN---RIAVTGAERAAINAP------MQGSAADIIKIAMIAIEKWITSLPADTVRM 888

Query: 625 VLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +L VHDE+V E  +     A + +  LM +  +    +PL A     + + 
Sbjct: 889 ILQVHDELVFEVKNEFLDEATAKIKELMENAVT--LDVPLLAGIGIGQNWG 937


>gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 942

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/706 (14%), Positives = 207/706 (29%), Gaps = 166/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + ID ET S   +             ++  +F  +          H   +        
Sbjct: 365 KPISIDTETTSQDPMM----------AELLGISFSEEPGVAYYIAFSHSESIYSHLLPSA 414

Query: 54  ---PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---S 107
               ++LK  LE+++   +  N  ++  VLK    +++    +  T++ +          
Sbjct: 415 EESLKILKPMLEDSNWKKIGQNIKYDLLVLKNY-GIELKGI-YFDTMLASYLLNPGERRH 472

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            +  +       + K    +EL+              + +  +        EY   D  +
Sbjct: 473 NMDDMAVDY--LNYKTITYEELV----------GTGKKKQNLYDIDPDKVSEYACEDADI 520

Query: 168 TREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           T ++   L P              E  +      +   G  VD +   +L+   D +  +
Sbjct: 521 TLQLHNVLSPKMDENIHKKLFYEMEMPVLLTLADMEFEGIAVDKSYFESLSGTFDTKIKE 580

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAI 274
            ++ +     G   +    ++L+T LF +  L  E  T    +T   VL S +   P   
Sbjct: 581 HEKNIH-FYAGRQFNVNSTKELQTVLFEDLRLPAEKKTQTGYSTDHSVLESLQGTHPIID 639

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            + + R + S+      +TL   +N   +   T      + TGR S      QN+P    
Sbjct: 640 DLLSIR-KFSKLKSTYTDTLPLLVNPKTKRIHTSYNQTIAATGRLSSTNPNLQNIPIKDE 698

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA +G +++  D + IE R++A  + 
Sbjct: 699 EGR-------------------------LLRKGFIAKKGYEILSLDYSQIELRIMAHFSN 733

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + A+ +G D++  T A  F V   QVT D R                         
Sbjct: 734 DPNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDMRNKA---------------------- 771

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                    NF           +          +   + +   +
Sbjct: 772 ----------------------KVVNFSVIYGVTSFGLSNNLRISRKEAKEFIEKYFAAY 809

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V+    E+ +  +Q                          N  +    GR     D+ 
Sbjct: 810 KGVATYMEEIVEFCKQ--------------------------NGYVETLLGRRRYLPDIH 843

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
           ++   +   +    R            +Q  S D++   M+   +          ++L V
Sbjct: 844 SSHKMV---SEGAKRVAINSP------IQGTSADMIKIAMIQIHEKIKKESFRSKLLLQV 894

Query: 629 HDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E  P   +    M    M S       +P+  +G     +
Sbjct: 895 HDELVFEVDPKEKKEFFQMAKEEMESAMK--LKVPIVVQGKFGGNW 938


>gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134]
 gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134]
          Length = 955

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/718 (14%), Positives = 209/718 (29%), Gaps = 175/718 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
                D ET S +          A+D  ++  AF              D      +    
Sbjct: 363 DEFCFDTETTSLV----------AQDAELVGIAFATYAGEAYYVPTPADQKEAQAIVDEF 412

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEA 115
           KE  E+  +  +A N  ++  VLK    ++ P  ++  T++        +   +  + ++
Sbjct: 413 KEVFEDESIGKIAQNLKYDWVVLKNY-GIE-PKGKFFDTMLAHYLLQPDMRHNMDVLAKS 470

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               + +  E   LI +            +             EY   D  +T ++ +  
Sbjct: 471 Y--LNYEPVEITSLIGK---------KGKKQGSMRDVELDKITEYAGEDADITLQLKEIF 519

Query: 176 EPLS------------------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           +                             E  L  +  T+   G  +D      L++ +
Sbjct: 520 DAQIKAQDLRHPAPEDGGEKVTLEKLLDEVETPLIEVLATVETNGVRLDSESLAKLSKEL 579

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSN 266
             E   L++++  +      +    ++L   LF +  L  +   T++    T + +L   
Sbjct: 580 AKEVVVLEEKIYKIAG-EQFNIASPKQLGEILFGKLQLDPKAKKTKSGQYATGEEILVKL 638

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                    + + R    +     ++ L E +N    L  T      + TGR S      
Sbjct: 639 ADKNEIVQHILDFR-GLQKLKNTYVDALPELVNKKTGLIHTSYNQAVAATGRLSSTNPNL 697

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIE 385
           QN+P  +    E                         VR   I   +   L+ AD + IE
Sbjct: 698 QNIPIRTAQGRE-------------------------VRRAFIPRSDEFVLLAADYSQIE 732

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A  + +   +KAF+ GED++ TT ++ + V   QV  D R   K            
Sbjct: 733 LRIMAEFSQDATMIKAFQNGEDIHATTASKIYKVPLDQVDSDMRRKAKTANF-------- 784

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  +            
Sbjct: 785 ------GIIYGIS------------------------------AHGLSERLNIPRKEAGE 808

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           + KA+ ++   V +  +++     +                             +    G
Sbjct: 809 IIKAYFEEFPAVKQYMDDMINKAREQE--------------------------YVETILG 842

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------ 619
           R    R++ +  +          R            +Q  + D++   M+   +      
Sbjct: 843 RRRYLRNINSRNAVERGN---AERNAINAP------IQGSAADMIKIAMIRLHEFLKKEH 893

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWA---KGLPLKAEGYESKRY 673
               ++L VHDE+V +    +       +  LM +  S       +P++ E  E   +
Sbjct: 894 LKSKMILQVHDELVFDAHKDELGILKPAIVDLMKNALSSINRTMQVPMEVEVGEGTTW 951


>gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 925

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 101/714 (14%), Positives = 189/714 (26%), Gaps = 168/714 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            +  D ET     L             ++  +              HD            
Sbjct: 335 QVAFDTETTGLDPLR----------AELVGVSLATAPGRACYIPIKHDAGPAQGSLLLDP 384

Query: 51  ------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
                        V    L   L +  V  + HN  ++  V+       + +  +  T++
Sbjct: 385 SPAAAGPDILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQA---GLTVTAFDDTML 441

Query: 99  LARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           L+           +  +         K+    + I    K               R    
Sbjct: 442 LSYVLDGASHGHGMDELA--------KLHLDHDTI----KFADVCGTGKNQITFDRVPLD 489

Query: 156 LFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAH 205
               Y   D  +T  +   L+             + E+ L  +   +   G  VD     
Sbjct: 490 KALAYAAEDADITLRLHGALKARLLAERMVTVYETLERPLVPVIVAMEAAGIKVDRTALM 549

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQR 261
            L+        +L+ ++++L      +    ++L   LF    L     T+T    T   
Sbjct: 550 ALSAEFGGRMAELEVQIQNLAG-REFNVGSPQQLGKVLFENMSLPGGKKTKTGQWGTGAD 608

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
            L               +  + S+      + LV  +N       T   L  + TGR S 
Sbjct: 609 ALEELAAQGHDLPARVLDWRQLSKLKGTYTDALVAQINPRTGRVHTSFALALTTTGRLSS 668

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+P  S    +                         +R   IA  G  L+ AD 
Sbjct: 669 SDPNLQNIPIRSEEGRK-------------------------IRHAFIAEPGHVLLSADY 703

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R++A +A  +  ++AF  G D++  T A+ F V    +    R   K +   + Y
Sbjct: 704 SQIELRLVAHVACIKGLIQAFHDGADIHAITAAQVFGVPVEGMDPMLRRRAKAINFGIIY 763

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              A           L ++        ++    + +  +F    +E    +       G 
Sbjct: 764 GISA-----FGLAQQLGISNGEAKSYIDAYFGRYPEIRDFMERTKEEARANGFVLTPFGR 818

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                          + +    +    E+   NG                          
Sbjct: 819 KVFT---------PGIKDKNGAMRAFAERAAING-------------------------- 843

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
                                    + R              A++ + L           
Sbjct: 844 ----------------PIQGGAADIIKRAMIRLPA-------ALAAEGLK---------- 870

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             ++L VHDE+V E P  ++    +++  +M S       +PL AE      + 
Sbjct: 871 ARLLLQVHDELVLEVPVAEQDATRAVVCRVMESAAQ--LDVPLVAEAGFGTSWG 922


>gi|332705531|ref|ZP_08425609.1| DNA polymerase I [Lyngbya majuscula 3L]
 gi|332355891|gb|EGJ35353.1| DNA polymerase I [Lyngbya majuscula 3L]
          Length = 996

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 114/701 (16%), Positives = 208/701 (29%), Gaps = 152/701 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDP-------VMPQVL 57
           D ET                D  ++     +      V      H         ++ + L
Sbjct: 412 DTETSDLEP----------RDAQLVGIGCCWGKEFTDVAYIPIGHKDGTNLDKDIVLESL 461

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGE- 114
           +  LE++D   V  NS F+R VL  C  + +       T++ +          L  +G  
Sbjct: 462 RPILESSDYPKVLQNSKFDRLVL-RCNGIQLA-GVVFDTMLASYVLNPETSHKLSDLGLH 519

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L + +Q                    L  + K           +YC  D   T  I  +
Sbjct: 520 YLGIEAQSY----------------NDLVPKGKTIRDLDIPTVADYCGMDAYTTFGIVFK 563

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L     +           EQ L  +   +  +G  +D       +Q ++ +   + Q+  
Sbjct: 564 LREELEQIPALQQLLLEVEQPLEPVLAEMEYQGIRIDKDYLQQFSQELEKDLVAIKQQAY 623

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSNKKLTPQAIQVFN 278
                   +    ++L   LF + GL            +T   +L+  +   P    +  
Sbjct: 624 QDAG-EEFNLGSPKQLSQLLFEKLGLDRRKSRKTKTGYSTDATILAKLQGDHPVVDAIVE 682

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   S+     ++ L   M SD +   T      + TGR S      QN+P  +     
Sbjct: 683 YR-SLSKLKSTYVDALPALMRSDTKRVHTDFNQTVTTTGRLSSSSPNLQNIPIRT----- 736

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                 S  +R   I   G  LV AD + IE R+LA ++ E   
Sbjct: 737 --------------------DFSRQIRKGFIPESGWLLVSADYSQIELRILAHLSQEPVL 776

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++A++T  D++  T    F      +T ++R +GK++   + Y  GA+ F + A      
Sbjct: 777 VEAYQTQADVHTLTAQMLF--DKEDITAEERRLGKIINFGVIYGMGAQRFAREAK----- 829

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           ++T       +   + +     +    ++        +                      
Sbjct: 830 VSTAEGKEFIDRLNQRYPLVFAYLEETKKKAIAQGYVETI-------------------- 869

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                  +RR               L    G+ L   D+     
Sbjct: 870 ---------------------LGRRRYFSF-------GGNSLRRLQGKPLDQIDLD-KLK 900

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634
            +N       R            +Q  S DI+   M+   +        ++L VHDE++ 
Sbjct: 901 SINPYDAGSLRAAANSP------IQGSSADIIKIAMIKLYQELQKYKARLLLQVHDELIF 954

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E P  +       +   M S       +PL  E +    + 
Sbjct: 955 EIPPDEWEELQLKIRETMESAVE--LTVPLVVEIHAGDNWM 993


>gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4]
 gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4]
          Length = 922

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/697 (14%), Positives = 196/697 (28%), Gaps = 152/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S   +             ++  +F  +          HD              
Sbjct: 346 AVDTETTSLDYMV----------AELVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTAL 395

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           + L+  LE+  +  V  N  ++ +VL     + +       T++ +      ++     G
Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLANA-GIQLQ-GVVFDTMLESYVFNSVASRHDMDG 453

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    ++                +    ++        Y   D  +T  + +
Sbjct: 454 LALKYLGHKNIAFED----------IAGKGAKQLTFNQIQLETAAPYAAEDADITLRLHQ 503

Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L  +   I  +G  +D  L    +  +  +  +L+ + 
Sbjct: 504 HLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETKA 563

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+   F + G  +   T     +T + VL       P    +  
Sbjct: 564 YDIAG-EKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVILE 622

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   ++      + L   +N   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 623 HR-SLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEGR 680

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA +G+K++ AD + IE R++A ++ +  
Sbjct: 681 R-------------------------IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAG 715

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAF  G+D++  T A  F      VT +QR   K +   L Y   A           L
Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSA-----FGLARQL 770

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           ++         ++    +     +    + +  E        G      +   R    R 
Sbjct: 771 DIPRNEAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRR- 829

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   +A       G A    K+  + +    K      +                 
Sbjct: 830 ----QAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEI----------------- 868

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                                               M+          + VHDE+V E  
Sbjct: 869 -----------------------------------AMI----------MQVHDELVFEVD 883

Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                     +  LM         + L AE      +
Sbjct: 884 ADKAETLKLKVCELMAKAA--NLDVELLAEAGIGDNW 918


>gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 996

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/711 (15%), Positives = 202/711 (28%), Gaps = 164/711 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52
            + +D ET S   ++            ++  +              H             
Sbjct: 406 VVAVDTETTSLDPMSC----------ELVGVSLAITPGRACYIPLQHREPGDGDLFGGAA 455

Query: 53  ----------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                         LK  LE+  V  +AHN  ++  VL       + +     T++++ +
Sbjct: 456 LLQGQIPLDKAIATLKPLLEDDAVLKIAHNMKYDLLVLARY---GVDVAPIEDTMLISYT 512

Query: 103 NG---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    L  +             G E I                    R A     E
Sbjct: 513 LDTGRNNHGLDELTLKH--------LGHENIPFSA----VAGSGRNFIGFARVALDRATE 560

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  VT  +++ L+P  + E            +      +  RG  +D A+   L+ 
Sbjct: 561 YATEDADVTLRLWRALKPRLAAEHMTNVYETLERPMVATLAGMERRGITIDRAMLSRLSG 620

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265
               +  +L+ ++  L      +    ++L   LF + GL     T     +T   VL  
Sbjct: 621 EFAQDMARLEADIFDLAG-ETFNLGSPKQLGDILFGKMGLPGAKKTATGAWSTSASVLED 679

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    +   +  + S+      + L   +N +     T   L A+ TGR S     
Sbjct: 680 LANEGNDFARRILDWRQLSKLKSTYTDALPGFVNKETGRVHTSYALAATTTGRLSSSDPN 739

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  + +  +                         +R   +AS G  L+ AD + IE
Sbjct: 740 LQNIPVRNEAGRK-------------------------IRKAFVASPGHVLISADYSQIE 774

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      KAF  G D++  T +  F V    +  + R   K +   + Y   A
Sbjct: 775 LRLLAHIADIPQLKKAFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIYGISA 834

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                      L++             E +    ++    ++   E        G  C  
Sbjct: 835 -----FGLANQLSIPREEAGAYIKRYFERFPGIRDYMEATKKLVREKGAVTTIFGRVCHF 889

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
            +      ++     +    +A       G A    +R  V +                 
Sbjct: 890 PRIG--SANASDRAFY---ERAAINAPIQGAAADIIRRAMVRMDD--------------- 929

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                                                 A++ + L   M          +
Sbjct: 930 --------------------------------------ALASEGLKAQM----------L 941

Query: 626 LTVHDEIVCETPDTDEFNASML-YHLMTSNPSWA--KGLPLKAEGYESKRY 673
           L VHDE+V E P  +      +   +M   P+ A    +PLK +   +  +
Sbjct: 942 LQVHDELVFEAPKKEAEATIEIARRVMEEAPAPAVQLAVPLKVDARAAANW 992


>gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42]
 gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42]
          Length = 922

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/699 (15%), Positives = 207/699 (29%), Gaps = 155/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
            +D ET S  +L             ++  +F  +          H+            + 
Sbjct: 349 ALDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
           + L+  LE+     +  +  ++R V      + +  +    T++ +    +  P  L ++
Sbjct: 399 ERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYA-HDTMLQSYVLEVHKPHGLASL 456

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E           G+  I+     E       +  P  +        Y   D   T ++ 
Sbjct: 457 AERH--------TGRTGISY----EDLCGKGAKQIPFAQVPVDKAAAYSCEDSDQTLDVH 504

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           + L P              E         I   G  +D       +  +     +L+QE 
Sbjct: 505 RVLWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLEQEA 564

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
            ++      +    ++L    F + G+ +   T     +T + VL    +  P   ++  
Sbjct: 565 YAIAGQP-FNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 623

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R    +      + L    +   GR+        A  TGR S      QN+P  +    
Sbjct: 624 HR-SLCKLKGTYTDKLSTLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIPIRTPEGR 681

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   +A  G+ +  AD + IE R++A ++G++ 
Sbjct: 682 R-------------------------VREAFVAPAGRVIASADYSQIELRIMAHISGDEA 716

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G D++  T A  F VA  QV+ +QR   KV+   L Y               L
Sbjct: 717 LLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMS-----SFGLAKNL 771

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            + T A     +   + +   + +    +         +   G          R     +
Sbjct: 772 GIETKAAAAYIDRYFQRYPGVKQYMEETKARAKARGYVETVFGR---------RLYLPEI 822

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +                                            P+G      +     
Sbjct: 823 NS-------------------------------------------PNGPRRGAAERAAIN 839

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
           + +  T   L ++           VQ           ++A K    +++ VHDE+V E P
Sbjct: 840 APMQGTAADLIKKAMVA-------VQGE---------LDARKPEVLMIMQVHDELVFELP 883

Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + +       +  LM      A  +PL AE      + K
Sbjct: 884 EGEVDWLRREIPRLMAGVA--ALQVPLLAEVGVGPDWDK 920


>gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY]
 gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY]
          Length = 922

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/699 (15%), Positives = 207/699 (29%), Gaps = 155/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
            +D ET S  +L             ++  +F  +          H+            + 
Sbjct: 349 ALDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
           + L+  LE+     +  +  ++R V      + +  +    T++ +    +  P  L ++
Sbjct: 399 ERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYA-HDTMLQSYVLEVHKPHGLTSL 456

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E           G+  I+     E       +  P  +        Y   D   T ++ 
Sbjct: 457 AERH--------TGRTGISY----EDLCGKGAKQIPFAQVPVDKAAAYSCEDSDQTLDVH 504

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           + L P              E         I   G  +D       +  +     +L+QE 
Sbjct: 505 RVLWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLEQEA 564

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
            ++      +    ++L    F + G+ +   T     +T + VL    +  P   ++  
Sbjct: 565 YAIAGQP-FNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLE 623

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R    +      + L    +   GR+        A  TGR S      QN+P  +    
Sbjct: 624 HR-SLCKLKGTYTDKLSTLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIPIRTPEGR 681

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   +A  G+ +  AD + IE R++A ++G++ 
Sbjct: 682 R-------------------------VREAFVAPAGRVIASADYSQIELRIMAHISGDEA 716

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G D++  T A  F VA  QV+ +QR   KV+   L Y               L
Sbjct: 717 LLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMS-----SFGLAKNL 771

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            + T A     +   + +   + +    +         +   G          R     +
Sbjct: 772 GIETKAAAAYIDRYFQRYPGVKQYMEETKAQAKARGYVETVFGR---------RLYLPEI 822

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +                                            P+G      +     
Sbjct: 823 NS-------------------------------------------PNGPRRGAAERAAIN 839

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
           + +  T   L ++           VQ           ++A K    +++ VHDE+V E P
Sbjct: 840 APMQGTAADLIKKAMVA-------VQGE---------LDARKPEVLMIMQVHDELVFELP 883

Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + +       +  LM      A  +PL AE      + K
Sbjct: 884 EGEVDWLRREIPRLMAGVA--ALQVPLLAEVGVGPDWDK 920


>gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT]
 gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT]
          Length = 951

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/722 (13%), Positives = 205/722 (28%), Gaps = 178/722 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------- 50
             + +D ET +   +             ++  +F   +         H            
Sbjct: 354 DLIAVDTETDALDPMR----------ANLVGISFALTNSEACYIPLAHKQAVKEMTQTDL 403

Query: 51  --------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
                                     LK  LEN  +  V  N  ++ T+        I +
Sbjct: 404 FTESEQNAEQFELVKNQLNKETCLAQLKPLLENPSIQKVGQNIKYDLTIFANHH---IQL 460

Query: 91  HRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +     T++ +          + A+ E           G ++I      E+      +  
Sbjct: 461 NGVCFDTMLQSYVLDSTGRHNMGALSERY--------LGHQVIEF----ESIAGKGKKQV 508

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-----------EQELWYLDQTINDRG 196
              + A     EY   D  +T ++ + L     +           E  L  +   +   G
Sbjct: 509 TFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSKMERNG 568

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LE 252
             +D       ++ +    T L+Q++         +    ++L+  LF +  L       
Sbjct: 569 VLIDSQALLKQSEKIARRLTALEQQVYQEAG-AEFNLASTKQLQEILFTKLALPIIAKTP 627

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
               +T + VL +  +      ++       ++      + L   +N       T     
Sbjct: 628 KGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTSYHQA 687

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  +                             C+R   IA +
Sbjct: 688 VTATGRLSSSDPNLQNIPIKNEEG-------------------------HCIRQAFIARK 722

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G K++ AD + IE R++A ++ +   + AF  G+D++ +T A  F +   +VT +QR   
Sbjct: 723 GYKIIAADYSQIELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSA 782

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   L Y            +  L ++        +   + +   + F   ++E   E 
Sbjct: 783 KAINFGLIYGMS-----SFGLSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQ 837

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
              +   G          R     ++        A  +      AI A  +     +   
Sbjct: 838 GYVETLFGR---------RLYLPEINS-----SNAIRRKGAERVAINAPMQGTAADII-- 881

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                          L    + N                        N +Q         
Sbjct: 882 --------------KLAMIAIHNEIKK--------------------NDIQ--------- 898

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESK 671
            M+          + VHDE+V E  +      ++++  LM +       +PL  +     
Sbjct: 899 -MI----------MQVHDELVFEVKENKVDEYSALIKSLMENAAH--LSVPLIVDIGVGD 945

Query: 672 RY 673
            +
Sbjct: 946 NW 947


>gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 976

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/725 (15%), Positives = 204/725 (28%), Gaps = 177/725 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           L +D ET         G+   A D  ++  +              H              
Sbjct: 370 LAVDTETT--------GLNASAVD--LVGISMAIAPGQACYIPLRHGATNDSAVGSGVAV 419

Query: 51  --------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
                                     +K   E+  V  + HN  ++  VL    N  I +
Sbjct: 420 QGGLNFSDDDTPAHYPQLDFETAMAEIKPLFEDPAVLKIGHNLKYDAHVLMRPRNGGINL 479

Query: 91  HRWICTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                T+ L+           ++  +             G  L     K         + 
Sbjct: 480 APVDDTMCLSYVLDGGRVERHSMDYLA------------GHWLDYTTIKFSDVCGKGAKQ 527

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRG 196
            P    A     +Y   D  +T  ++  L+P              E+ L  +   + + G
Sbjct: 528 IPFSELAPEAALDYAAEDADITLRLWMILKPRLAGEKVASVYERLERPLIPVLAQMENYG 587

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD ++   ++         L Q++ +L      +    ++L   LF + GL      +
Sbjct: 588 ITVDRSILARMSNDFATRMEALAQDILALAG-EDFNIASPKQLGEILFDKMGLQGGKKAK 646

Query: 257 ----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFL 311
               +T   VL        +      +    ++      + LVE +    GR+  +   +
Sbjct: 647 TGAYSTSADVLEDLAASGVEIASKVLDWRHLAKLKSTYADALVECILPATGRVHTSFSMV 706

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
           GA  TGR S      QN+P  +                              +R+  IA+
Sbjct: 707 GA-STGRLSSSDPNVQNIPIRTSEGR-------------------------QIRTAFIAA 740

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           EG KL+  D + IE R++A +AGEQ  ++AF+ G D++  T +  F +   Q+  + R  
Sbjct: 741 EGCKLISVDYSQIELRLVAHVAGEQSMIEAFKDGIDIHARTASEVFGIPLDQMDSETRRR 800

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y   A           L++          S  E +     +   ++    E
Sbjct: 801 AKAINFGIIYGISA-----FGLARQLSIPQGEARDYIASYFENFPGIRAYMERIKTEARE 855

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
               +   G                                                 + 
Sbjct: 856 DGFVETLFGRRIH--------------------------------ITGMAGGSAAHRGFA 883

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
           ++   N  +                     +    + R         +      + DI  
Sbjct: 884 ERQAINAPIQ-------------------GSAADIIKRAMIRIPPALQ------AADI-- 916

Query: 612 EGMMNATKAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT--SNPSWAKGLPLKAEGY 668
                      D++L VHDE++ E P    +     +  +M   + P     +PL AE  
Sbjct: 917 ---------RADMLLQVHDELIFEAPAADADNAVKHITRIMEAAAAPVVDLKVPLVAEAG 967

Query: 669 ESKRY 673
            +  +
Sbjct: 968 IADSW 972


>gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126]
 gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126]
          Length = 936

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/702 (14%), Positives = 207/702 (29%), Gaps = 162/702 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
                D ET                D  ++  AF +            D      +    
Sbjct: 363 DEFCFDTETTDLEPT----------DAELVGLAFSYVAGEAYYVPFPADQKEAQKIADEF 412

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           KE LEN D+T +  N  ++  V++    + +   +   T++            +  + E 
Sbjct: 413 KEVLENEDITKIGQNLKYDIQVMRNY-GVRVQ-GKMFDTMLAHYLLDPETRHNMDVMAE- 469

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               +       +LI +            +             EY   D  +T ++   L
Sbjct: 470 -NYLNYSPVSITDLIGK---------KGVKQGNMRDVPVEDVVEYAGEDADITLQLKHIL 519

Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E    +             L Y+   +   G  +D      +++ ++    +  +++  L
Sbjct: 520 EKEIKENNLESLLHDVEEPLSYVLAEMEYEGVKIDKDALSKMSKELETAALEAQEKIFEL 579

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    ++L   LF +  L      T+T    T + +LS        A ++   R
Sbjct: 580 AGQ-EFNIASPKQLGEILFDKMKLVDKPKKTKTGQYATGEEILSKLANEHEIADKILEFR 638

Query: 281 MRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + ++  DGR+    +   A+ TGR S      QN+P  +      
Sbjct: 639 -EYQKLKSTYVDALPKLISKKDGRVHTDYRQAVAA-TGRLSSNNPNLQNIPIRTEKGR-- 694

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                                   +R   +   E  +L+ AD + IE R++A  + ++  
Sbjct: 695 -----------------------LIRKAFVPRDENYQLMAADYSQIELRIMAAFSQDEAM 731

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF+ G D++ TT A+ F V    V    R   K +                    G++
Sbjct: 732 MEAFKNGRDIHATTAAKVFGVDLDDVDPGMRRKAKEVNF--------------GIIYGIS 777

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A       T    + KA+ ++  RV 
Sbjct: 778 ------------------------------AFGLAQNLNISRTEASDIIKAYFKEFPRVH 807

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +   ++ +                              N  +    GR    RD+ +   
Sbjct: 808 DYMEKVKEDAR--------------------------ANEYVTTILGRKRWLRDINSRNQ 841

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632
            +        R            +Q  + D++   M+N  K          +++ VHDE+
Sbjct: 842 TIRGY---AERNAINAP------IQGSAADMIKIAMINIHKWMEKENLKSKMIMQVHDEL 892

Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + +    +       +  LM +       +P++     +  +
Sbjct: 893 IFDAHKDEIDKLKDKVVDLMKNAME--LDVPMEIGVGIADNW 932


>gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506]
 gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506]
          Length = 981

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/708 (14%), Positives = 205/708 (28%), Gaps = 162/708 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + +D ET     +             ++ F+     +        H              
Sbjct: 394 VAVDTETTGLDPM----------QADIVGFSLATAPNEACYVPLSHKGGDEGLFSEGLLP 443

Query: 51  PVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG- 104
             +P       +K  +E+  V  +  N  ++  +LK    L I +  +  T++++     
Sbjct: 444 DQIPIPDAVAAIKPLMEHPGVLKIGQNLKYDWLILKR---LGIELGPYDDTMLVSYVLDA 500

Query: 105 --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
              P  +  +             G   I    K E             R A     +Y  
Sbjct: 501 GASPHGMDPLSMRW--------LGHTPI----KFEEVCGKGKGQICFDRAAIDKATDYAA 548

Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            D  VT  +++ L+P            + E+ L  +   + +RG  +D  +   L+    
Sbjct: 549 EDADVTLRLWRVLKPRLAAEGKTTVYETLERPLVTVLAQMEERGITIDRQMLSRLSGEFA 608

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268
               +L+ E+  +      +    ++L   LF +  +     T     +T   VL    +
Sbjct: 609 QGMGRLEAEISEMAG-ETFNPGSPKQLGDILFGKMQIPGGRKTPTGAWSTGADVLEELAE 667

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
              +  +   +  +  +      + L   +N +     T   L A+ TGR S      QN
Sbjct: 668 QGHELPRRILDWRQLQKLKSTYTDALPTYVNKETGRVHTSFALAATTTGRLSSSEPNLQN 727

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +    +                         +R   IA+ G KLV AD + IE R+
Sbjct: 728 IPVRTEEGRK-------------------------IRKAFIAAPGHKLVSADYSQIELRL 762

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A      +AF+ G D++  T +  F V    +  + R   K +   + Y   A   
Sbjct: 763 LAEIADTPSLRQAFQDGLDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISA--- 819

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   L++             E +     +    +    EH   +   G  C     
Sbjct: 820 --FGLANQLSIPREEAGAYIKRYFERFPGIRAYMDETRNFAREHGYVETLFGRRCHYPDI 877

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           +   K+  +        +A       G A    +R                         
Sbjct: 878 S--AKNPSIRAFN---ERAAINARLQGSAADIIRR------------------------- 907

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                      +      L +               +S       ++             
Sbjct: 908 ----------AMARMDAALEKA-------------GLSA----RMLLQVH---------- 930

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
            DE++ E PD +      ++   M     P+ A  +PLK +   ++ +
Sbjct: 931 -DELIFEVPDDEIAATIPVVRETMELAPFPAVALKVPLKVDARAAENW 977


>gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1]
 gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1]
          Length = 922

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/697 (14%), Positives = 198/697 (28%), Gaps = 152/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S   +             ++  +F  +          HD              
Sbjct: 346 AVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFAL 395

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVG 113
           + L+  LE+  +  V  N  ++ +VL     + +       T++ +      ++     G
Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLANA-GITLQGVA-FDTMLESYVFNSVASRHDMDG 453

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            ALK    K    ++                +    ++ +      Y   D  +T  + +
Sbjct: 454 LALKYLGHKNIAFED----------IAGKGAKQLTFNQISLETAAPYAAEDADITLRLHQ 503

Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  L ++   I  +G  +D  L    ++ +  +  +L+ + 
Sbjct: 504 HLWPRLEKEAELASVFTDIELPLIHILSDIERQGVFIDSMLLGQQSEELARKIDELETKA 563

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+   F + G  +   T     +T + VL       P    +  
Sbjct: 564 YDIAG-EKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLPKVILE 622

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   ++      + L   +N   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 623 HR-SLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTVEGR 680

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA EG+K++ AD + IE R++A ++ +  
Sbjct: 681 R-------------------------IRQAFIAPEGRKILAADYSQIELRIMAHLSQDAG 715

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G+D++  T A  F      VT +QR   K +   L Y   A           L
Sbjct: 716 LLNAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSA-----FGLARQL 770

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           ++         ++    +     +    + +  +        G      +   R    R 
Sbjct: 771 DIPRNEAQTYIDTYFARYPGVLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRNAMRR- 829

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   +A       G A    K+  + +    K      +                 
Sbjct: 830 ----QAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEI----------------- 868

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                                               M+          + VHDE+V E  
Sbjct: 869 -----------------------------------AMI----------MQVHDELVFEVD 883

Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                     +  LM         + L AE      +
Sbjct: 884 ADKAETLKQKVCELMAKAA--NLDVELLAEAGIGDNW 918


>gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P]
 gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P]
          Length = 980

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/706 (14%), Positives = 204/706 (28%), Gaps = 167/706 (23%)

Query: 1   MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMP 54
           M    +  D ET     L             +I  AF ++           D      + 
Sbjct: 405 MKQTAVCFDTETTGLKALEV----------ELIGIAFSYETGKGYYVSFPEDQAETQRIL 454

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP--SALKA 111
           +  +   E+  +  + HN  ++  VL       +P+  +   T++            +  
Sbjct: 455 EDFRPFFESE-IEKIGHNLKYDIKVLSTY---KMPVKGKLFDTMIAHYLINPDMRHNMDV 510

Query: 112 VGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           + E  L      + E   LI +                      +   EY   D  +T +
Sbjct: 511 LAETYLNYQPISIAE---LIGK---------KGKNQLSMRSVPLKEQTEYAVEDADITFQ 558

Query: 171 IFKRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           + +            +  +  E  L  +   +   G  V+      L+  +  +  +L++
Sbjct: 559 LKQLFTGELENGNVTKLFNDIELPLVSVLTAMEIEGINVNTDFLKELSVALTADIDRLEK 618

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQ 275
            +         +    ++L   LF +  L      T+T    T + +LS   K       
Sbjct: 619 SIYEQAG-EEFNIASPKQLGIVLFEKMELVKKPKKTKTGQYATGEDILSYLAKEHDIIKD 677

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R    +     ++ L   +N       T      + TGR S      QN+P  +  
Sbjct: 678 IQEYRQY-KKLQSTYVDALPNEVNPKTGRIHTQYMQAVAATGRLSSNNPNLQNIPIRTAR 736

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394
             E                         VR   +   E   L+ AD + IE R++A ++ 
Sbjct: 737 GRE-------------------------VRKAFVPRDENHVLLAADYSQIELRIIAALSE 771

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           E+  + AF+ GED++ +T A+ FNV   +VT+DQR+  K +   + Y            +
Sbjct: 772 EENMINAFKNGEDIHASTAAKVFNVPLNEVTRDQRSNAKTVNFGIVY-----GVSAFGLS 826

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
              +                                          +  + +   + + +
Sbjct: 827 NQTD---------------------------------------LSRSEAKELIDTYYETY 847

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            ++    +       +        +                          R    +D+ 
Sbjct: 848 PKLKAYMSAQVDFARE--HGYVETVLN------------------------RRRYLKDIN 881

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
           +  + +     +               +Q  + DI+   M+N  K          ++L V
Sbjct: 882 SRNAVVRNGAERN---------AVNAPIQGSAADIIKLAMINIQKRFEKEGFRSRMLLQV 932

Query: 629 HDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V +T   +      +    M         +PL  E    + +
Sbjct: 933 HDELVFDTHKDELEIIKPIIKYEMEHAFK--MSVPLDVEVGIGENW 976


>gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
 gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
          Length = 538

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 187/588 (31%), Positives = 257/588 (43%), Gaps = 72/588 (12%)

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKPN-HREAWRLFGEYCKG 163
           +L AVG AL L  QK   GK LI +FC             RN P+    +W  F +Y + 
Sbjct: 2   SLDAVGAALDLDVQKDTAGKRLIKQFCTPATPSVLNGGGTRNLPSSDPTSWAQFIDYNQR 61

Query: 164 DVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           DV V   I  RL   P+   E + + LDQ IND G  +D  LA     + D  R      
Sbjct: 62  DVEVELAIHDRLSSFPIPEAEWDAYALDQRINDTGILLDHTLADAAVALDDQHRAATLAR 121

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
              LT   + +     +LK WL    G  +  L +   +  L      T +  +V   R 
Sbjct: 122 ARELTG--LENPNSPIQLKEWL-TTHGCEMSSLAKADVEAALE---SATGKVKEVLELRG 175

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++S+V K   +     +DGR RG +QF GA RTGR++G +   QNLPR      +  +
Sbjct: 176 DLAKSSVKKYQAMHNVTGTDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQAR 235

Query: 342 II---THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
            +    +L             +S  +R+  I S G + +VAD + IEARV+AW+AGE   
Sbjct: 236 TLTRQRNLDALELLYDSVPDTLSQLIRTAFIPSAGCRFIVADYSAIEARVIAWLAGETST 295

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
           L AF  G+DLY  T +R F V   +     + R  GK+  LA GY G   A + M     
Sbjct: 296 LAAFRDGKDLYCETASRMFGVPVEKHGINAELRQKGKIATLACGYNGSVGALKAMG---- 351

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                               A+         + +  AWR  +  
Sbjct: 352 ------------------------------------ALRMGLAEHELKPIVDAWRAANPN 375

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVG 574
           +  LW ++ QA    I   +A+  R  R         +   L + LPSGR L Y    +G
Sbjct: 376 IVRLWADVEQAALDAITTRQAVRLRNLR------FTAESGILFITLPSGRRLAYVKPQLG 429

Query: 575 NNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
            NR    + T       R+  R  TYGGKL ENIVQAV+RD+L   M    +AG+ IV+ 
Sbjct: 430 ENRWGGTSITYSGVTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQAGHKIVMH 489

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VHDEIV + P+   F  +    LMT+ P WA GLPL A+GYE   YRK
Sbjct: 490 VHDEIVIDEPEDSGFTIADACQLMTTPPDWAAGLPLDADGYECDYYRK 537


>gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424]
 gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424]
          Length = 966

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/701 (16%), Positives = 225/701 (32%), Gaps = 151/701 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVH--DPVMPQV-----L 57
           D ET S             +D  ++     + + P  V      H     +PQ      L
Sbjct: 381 DTETTSLEP----------KDTTLVGIGCCWGEQPTEVAYIPLNHTEGEQLPQEEVLSAL 430

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
              LE+ +   V  N+ F+R VL     + +       T++ +          L  + E 
Sbjct: 431 SVILESENYPKVFQNTKFDRIVLLN-KGIKLA-GVVFDTMLASYVLRPELSHKLSDLCER 488

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             L + K    ++L               + +     +      YC  D   T  +  +L
Sbjct: 489 Y-LENIKALNYRDL------------EIPKTQTIAHLSLEKVAHYCGMDAYATFMLVPKL 535

Query: 176 EPLSSKEQELWY-----------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                +  +L+            +   + + G C+D A  + L+Q ++ +   L+ +   
Sbjct: 536 IAELKQAPDLYELLLKVEQPLEPVLAEMENTGVCIDTAYLNQLSQQLEQDLQILETKAYE 595

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L   LF + GL+     +     +T    L   +   P    +  +
Sbjct: 596 AAG-ESFNLGSPKQLSEILFEKLGLNKRKSRKLKTGYSTDHATLEKLQGDHPIIDYILEH 654

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   ++     ++ L   ++   GR+         + TGR S      QN+P  +     
Sbjct: 655 R-TLAKLKSTYVDALPALVHPQTGRVHTDFNQAVTT-TGRLSSSNPNLQNIPIRTE---- 708

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                 S  +R   I  +   LV AD + IE R+LA ++ E   
Sbjct: 709 ---------------------FSRQIRKAFITQDDWLLVSADYSQIELRILAHLSQEPVL 747

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+A++  +D++  T    F+     +T ++R+IGK +   + Y  GA   Q+ A + GL+
Sbjct: 748 LEAYQNYQDVHRVTAQLLFDKEV--ITSEERSIGKTINFGVIYGMGA---QRFARSMGLS 802

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                     +   +++     +   +++            G       + + +      
Sbjct: 803 FQEGKD--FIDKYHQKYARVFEYLERVKKEAIAKGFVTTIKGR------RRYFE------ 848

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                          +     N+L    P        ++  ++ 
Sbjct: 849 -------------------------------FFDDKLNHLRGEKP-------ENLDLDKL 870

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634
            LN +  QL R            +Q  S DI+   M+   +        ++L VHDE+V 
Sbjct: 871 NLNYSDAQLLRAAANAP------IQGSSADIIKIAMVQLHEILQHYQARLLLQVHDELVF 924

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E P  +  +    +   M +       +PL  +    K + 
Sbjct: 925 EIPPDEWEDLQVKIKDTMENAVK--LTVPLVVDIRSGKNWM 963


>gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
 gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A]
          Length = 901

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 203/700 (29%), Gaps = 163/700 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------PQVLK 58
            D ET S   +              +  +F  +         VH   +          LK
Sbjct: 328 FDVETDSLNYM----------QAHWVGISFAVEAGEAWYLPLVHQNGINLPFAETLAALK 377

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA 115
              EN  +  +  +  F+R +L     + +       T++++           +  + + 
Sbjct: 378 NLFENASIRKIGQHLKFDRHILARY-GISLN-GVIDDTMLMSYCYNSTATRHNMDDLADF 435

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                        L  +  + E       + +           +Y   D  +T ++++  
Sbjct: 436 Y------------LNKQTIRFEDIAGSGAKQRRFDEIDLETAMQYACEDADITLQLYQFF 483

Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +              + E+ L  +   +  +G  +        +Q +  +   L ++   
Sbjct: 484 QQKLASEPTLQALYENVERPLAEILWAMEHQGVKIAGDKLAVQSQELAAQLKTLQKQAYQ 543

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKL-TPQAIQVFNN 279
           L  G V +    ++L+  LF    L           +T + VL    +L      ++  N
Sbjct: 544 LAGG-VFNLDSPKQLQEILFERLALPVIHKTPTGQASTNEEVLQKLAELRQSALPEIILN 602

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                +      + L E ++ D +   T      + TGR S      QN+P  S      
Sbjct: 603 YRALGKLKSTYTDKLPELIDPDSKRVHTSYHQAVTSTGRLSSSDPNLQNIPIRSDEGRR- 661

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA EG  ++ AD + IE R++A ++ ++   
Sbjct: 662 ------------------------IRQAFIAEEGYSILAADYSQIELRIMAHLSQDERLQ 697

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+  +D++  T A  F+VAP  V ++QR   K +                    G++ 
Sbjct: 698 RAFQLQQDIHTATAAELFSVAPEAVDRNQRRDAKAIN--------------FGLIYGMS- 742

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A +     T        +  ++ +V  
Sbjct: 743 -----------------------------AFGLARQLNISRTQAAEYIDKYFHRYPQVLA 773

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             +   Q  +Q                             +    GR L   D+ N    
Sbjct: 774 YMDSARQTAQQ--------------------------QGYVSTLLGRRLYIPDIHNKNM- 806

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVC 634
                R   R            +Q  + DI+   M+        +    +++ VHDE+V 
Sbjct: 807 --QRRRAAERLAINAP------MQGSAADIIKLAMVQFWQTYGAQKECRLLMQVHDELVF 858

Query: 635 ETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E            + H+M         +PL  +   SK +
Sbjct: 859 EVATAALDIWQPRITHIMEHALP--LSVPLIVDCGVSKDW 896


>gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 896

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 212/701 (30%), Gaps = 161/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC---VHDPVMPQVLK 58
             +  D ET     L             ++   FG              +    + + +K
Sbjct: 327 KQICFDTETTDIQPLK----------AELVGIGFGIHPKKAWYVPLNGKLGKQRVLEGVK 376

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA 115
              EN+ +    HN  ++  VL+    + I  +    T++ +          +L+ +   
Sbjct: 377 PLFENSAIGFYGHNVKYDWHVLQN-EGIQIQ-NICFDTILASYILNAHSRQHSLEVLA-- 432

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L+   +      ELI                            EYC  DV  T  + + L
Sbjct: 433 LEYFGKVTIPISELI----------GKGKNVLSMRDVPIERVTEYCCEDVDFTCRLKEVL 482

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   +  RG  VD+     L++ +  E   L + + ++
Sbjct: 483 EKQLKERDLLNLYHQIELPLLVVLAKMERRGIYVDIPYLEQLSKELTQELKTLQESIYTM 542

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282
                 +    +++   LF++ G+     T    +T   VL   K   P A ++   R+ 
Sbjct: 543 AG-EEFNLNSPKQVSELLFIKLGIPAPKKTATGHSTSAEVLEFLKNDYPLAGKILEYRL- 600

Query: 283 ASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             +     ++ L   +     R+  T     A+ TGR S      QN+P  +    +   
Sbjct: 601 LEKLRSTYVDALPSQVIPRTHRIHSTFNQSVAA-TGRLSSQDPNLQNIPIRTEEGRK--- 656

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +R       EG   + AD + IE R+LA ++ +   + 
Sbjct: 657 ----------------------IRGAFRPEKEGWSFLSADYSQIELRLLAHLSQDPVLMA 694

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+  ED++  T A  F +   QV+K+QR   K +                    G    
Sbjct: 695 AFQNNEDIHTYTAASMFEIPLEQVSKEQRYQAKAIN--------------FGIIYG---- 736

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                     +     A E         +    + Q++ ++ E 
Sbjct: 737 --------------------------QQAFGLARELGIEVKQASKFITMYFQRYPKIKEY 770

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              L Q+ E     GK++                         +GR  +  ++ +     
Sbjct: 771 ---LDQSKENARATGKSVTL-----------------------TGRERIIPEILSKNM-- 802

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVC 634
                   R            +Q  + D++   M+   +          ++L +HDE++ 
Sbjct: 803 -QIRAAAERLA------VNTPLQGTAADLIKMAMLKMDEEIEKQHLKGFMILQIHDELIF 855

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
           E PD +    S L   +M S       + L  +    K ++
Sbjct: 856 EIPDEEISLFSQLVPEVMQSVM--LLNVSLVVDINIGKNWK 894


>gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
 gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
          Length = 914

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/695 (14%), Positives = 193/695 (27%), Gaps = 150/695 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            ID ET S + L             ++  +   +          H            ++ 
Sbjct: 340 SIDTETTSLVPL----------QAQLVGISLCCEPGVAAYIPVAHRYADAPVQLSRELVL 389

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             ++  LE+     V  N  ++  +      + +       T++ +       +      
Sbjct: 390 GKMQAWLEDPAKAKVGQNLKYDSHIFANH-GITLRGIA-HDTMLESYVFESHRSHDMDSL 447

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+           L       +             +       EY   D  +T ++ + 
Sbjct: 448 ALRH----------LGRTTITFQEVCGKGASQICFDQVDIARATEYAAEDADITLQLHQA 497

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P               E     + Q I   G  +D  +    +  +     +++    
Sbjct: 498 MLPQVTSDEGLLFVYEKIEVPTAVVLQKIERNGVLIDTGILQVQSHELGKRMLEIETSAY 557

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L      +    +++    F +  L +   T +    T + VL+   +  P    +   
Sbjct: 558 ELAGQP-FNLNSPKQIGEIFFEKLQLPVVKKTPSGAPSTDEEVLAKLAEDYPLPKVLLEY 616

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++       T      + TGR +      QN+P  +      
Sbjct: 617 R-SLSKLKSTYTDKLPKMIDPTTGRVHTNYAQTVAVTGRLASNEPNLQNIPIRTAEGRR- 674

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G  +V AD + IE R++A ++G+   L
Sbjct: 675 ------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLSGDANML 710

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T A  F+   A VT +QR   KV+   L Y   A           L +
Sbjct: 711 RAFADGIDIHRATAAEIFSTGAADVTTEQRRYAKVINFGLIYGMSA-----FGLAGNLGI 765

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A     +     +   + F    +     H   +   G                   
Sbjct: 766 ERGAAQSYIDKYFARFSGVKQFMDETRLKAKAHGYVETVFGR-----------------R 808

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           LW                                      +  P+G        G  R+ 
Sbjct: 809 LW-----------------------------------LPEINSPNGPRRQ----GAERAA 829

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
           +N   +          KL+   VQ           +        +V+ VHDE+V E P  
Sbjct: 830 INAPMQG---TAADLIKLSMVAVQG---------WLETDGLKSLMVMQVHDELVLEVPQE 877

Query: 640 DEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +       L  LM         +PL AE    K +
Sbjct: 878 ELELVRVKLPALMAGVAE--LKVPLTAEVGIGKNW 910


>gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
 gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4]
          Length = 953

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 94/700 (13%), Positives = 204/700 (29%), Gaps = 162/700 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           +  D ET     LT            ++  AF ++           D      + + L+ 
Sbjct: 382 VCFDTETTGLNPLT----------AELVGIAFSWETGKGFYLPFPEDKQEAQAIIEALRC 431

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-AL 116
             E  ++  +  N  ++  VL    N+++       T++            +  + E  L
Sbjct: 432 FFEAENIQKIGQNLKYDIKVLAKY-NVEVK-GPLFDTMLAHYLINPDMRHNMDVLAETYL 489

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             +   + E   LI +                          EY   D  +T ++ +  E
Sbjct: 490 NYTPVSITE---LIGK---------KGKNQLSMRDVPLDKQTEYAVEDADITLQLKEHFE 537

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   +   G  +D     +L+  ++ +   L  ++  + 
Sbjct: 538 KELGEANTQKLFDDIEVPLLRVLAAMELEGINLDKDFLQSLSNDLNRDIEALVTKIYDVA 597

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L   LF +  L      T+     T + +LS   K       +   R 
Sbjct: 598 G-EEFNIASPKQLGIILFEKLKLVDKPKKTKTGQYKTGEDILSVLAKDHEIIRNILEYR- 655

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++     ++ L   +        T      + TGR S      QN+P  +        
Sbjct: 656 GLAKLKSTYVDALPLQVEESTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGR---- 711

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   I   +   L+ AD + IE R++A ++ E+  ++
Sbjct: 712 ---------------------QVRKAFIPRNDDYTLLAADYSQIELRIIAALSKEETMIE 750

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ GED++ +T ++ F V   +VT+ QR+  K +   +                G++  
Sbjct: 751 AFKNGEDIHASTASKVFGVPIEEVTRAQRSNAKTVNFGII--------------YGVSAF 796

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             ++                                       + +   + + + ++ + 
Sbjct: 797 GLSNQTD------------------------------LSRGEAKELIDTYYETYPKLKKY 826

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            +E                                 N  +     R    +D+ +  + +
Sbjct: 827 MSEQVHFARD--------------------------NGYVKTILDRRRYLKDINSRNAVV 860

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                +               +Q  + DI+   M+N             ++L VHDE+V 
Sbjct: 861 RGAAERN---------AVNAPIQGSAADIIKIAMINIYNKLEAGNYKTKMLLQVHDELVF 911

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +    +     +++   M +       +PL  E      +
Sbjct: 912 DVYKPELEKMTTLIKTEMENAFK--MEVPLDVEVDTGLNW 949


>gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136]
          Length = 971

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 208/699 (29%), Gaps = 159/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKEA 60
             D ET     L+            ++  AF    H    +    +      + + +K  
Sbjct: 398 CFDTETDGLDPLS----------ARMLGIAFSIAPHEGCYFHIPEERDEHLAVLKEVKTF 447

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L  +    + HN  F+  V  A   +++    +  T+++           +  + E    
Sbjct: 448 LSTSKAEKIGHNLKFDLRVFLAH-GIEVA-GPFFDTMLVHALVEPDQRHGMDYLSERY-- 503

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     LI                K           EY   D  VT ++ ++L P 
Sbjct: 504 LGYSPVSITTLIGEKKGATP-------QKSMAEVPLEPLAEYAAEDADVTLQLSQKLRPE 556

Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
             +          E  L  +   +   G  VDV       Q +  +   L + ++     
Sbjct: 557 LERLGLMKVFYEIEAPLLPVLAHMEHEGVKVDVPTLEEFGQELLSQANVLRERIQGYVDW 616

Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +    ++L   LF    L      T T    T ++ L + +   P    +   R   
Sbjct: 617 P-FNLNSPKQLGEVLFDHLKLMEKPKKTATGQYQTNEQTLLTLQGRHPIIDDILAYR-EC 674

Query: 284 SRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           ++     ++ L  A+N    R+  T   L A+ TGR +      QN+P  +    E    
Sbjct: 675 TKLKSTYVDALPAAVNPLTHRVHTTFHQLMAA-TGRMASTDPNLQNIPIRTDQGRE---- 729

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                +R   +   EG  L+ AD + IE RV+A ++ +   ++A
Sbjct: 730 ---------------------IRKAFVPEKEGWVLMSADYSQIELRVMAELSADPAMMEA 768

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+ G D++  T A+ + VA  +V  + R   K++   + Y   A    +           
Sbjct: 769 FQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIYGISAFGLSQ----------- 817

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                  T   ++ + + +++  V    
Sbjct: 818 --------------------------------RLGNTSRTEAAQIIENYFKQYPGVKRYM 845

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
            ++                                   +   +GR    RD+ ++   + 
Sbjct: 846 EDIVTQART--------------------------QGYVETLTGRRRYLRDINSSNMTVR 879

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
           + T    R            +Q  + D++   M+N  ++         ++L VHDE++ E
Sbjct: 880 SAT---ERVAMNAP------IQGTAADMIKLAMVNVARSLREGGFKTRMLLQVHDELLFE 930

Query: 636 TPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
            P  +      +    M         +P+  E    K +
Sbjct: 931 VPLEEVDKVKPVIEQGMREALP--LKVPVLVEAGTGKTW 967


>gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
 gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707]
 gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27]
          Length = 903

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/698 (15%), Positives = 193/698 (27%), Gaps = 155/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +           Y E   ++  +F    H        H+            + 
Sbjct: 328 AFDLETNNLD---------YIE-AEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVL 377

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             LK  LE+     V  N  F+  VL     +++   R   +++ +           + +
Sbjct: 378 ARLKPLLEDPRHGKVGQNLKFDCNVLANY-GIELQGIR-HDSMLESYVLDSTATRHNMDS 435

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +              K L       E       +  P ++        Y   D  ++ ++
Sbjct: 436 LAL------------KYLQRTTITYEMVAGKGAKQLPFNQVTIEKAAPYAAEDADISLQL 483

Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
                P   +E+            L  +   +   G  V+       +  +     +L+Q
Sbjct: 484 HHCFWPRLQQEEGLRQLYQELEIPLIPVLSRMERNGVQVNTEQLKAQSDELAARLKRLEQ 543

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           E   L      +    ++++  L+ +  L +   T     +T + VL       P    +
Sbjct: 544 EAFELAG-ESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPLPQLL 602

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   S+      + L   +NS      T      + TGR S      QN+P  S   
Sbjct: 603 LEYR-TLSKLKSTYTDRLPLQVNSHTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRSTEG 661

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G +LV AD + IE R++A ++ ++
Sbjct: 662 RR-------------------------IRQAFIAPPGYRLVAADYSQIELRIMAHLSEDE 696

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AFE  ED++  T    F      VT +QR   K +   L Y   A    +      
Sbjct: 697 GLLAAFEAEEDIHQRTATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSAHGLGR-----Q 751

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +N  A         + +   + +   + +   +    +   G      +   RQ    
Sbjct: 752 LGINRTAAQHYIERYFQRYPGVKAYMENICQQARQKGYVETLFGRRLYLPEIHSRQT--- 808

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
             +  N+  +        G A    KR                                 
Sbjct: 809 --QRRNQAERTAINAPMQGSAADIIKR--------------------------------- 833

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
              +    R L  +                       M+          + VHDE+V E 
Sbjct: 834 --AMIHADRWLQEQKANAR------------------MI----------MQVHDELVFEV 863

Query: 637 PDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +         +   M +       +PL  E      +
Sbjct: 864 AEDKLEATIRAIRENMAAAAQ--LKVPLIVEIGSGTNW 899


>gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
 gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568]
          Length = 964

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/723 (13%), Positives = 196/723 (27%), Gaps = 183/723 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
            +  D ET +                 +   +     +        H             
Sbjct: 369 VVGFDTETDALSST----------HAGLCGVSLAVGPNEACYIPLTHEHEPTGDGGLDFG 418

Query: 50  -------------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                         P     LK+ LE+  V  V  N  ++  V+       + +      
Sbjct: 419 DGGDARPPLQQIDKPTALARLKDLLEDPSVLKVGQNIKYDLAVMAR---RGVRVAPIDDV 475

Query: 97  LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           ++++           +  +          +  G E I                K      
Sbjct: 476 MLISYVLEGGLHGHGMDELAR--------LHLGHEPIPFKS----VAGTGKSQKSFKHVE 523

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203
            +    Y   D  VT  + + L+P            + E+ +  +   +   G  VD   
Sbjct: 524 LKSAVCYAAEDADVTLRLHRLLKPRLAAEGLSNVYETLERGMPAVLADMERAGVRVDPDR 583

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TC 259
             +L+        +L++E   L      +     ++   LF E  L     T +    T 
Sbjct: 584 LRSLSSTFGQRMAELEEEAHKLAGRP-FNVGSPRQIGEILFGEMNLPGGKKTASGQWGTD 642

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL    +  P    + + R   S+      + LV AM+       T   L A+ TGR 
Sbjct: 643 ASVLEDLAQSHPLPRTILDWRQ-LSKLKGTYTDALVAAMDPQTNRVHTSYQLAAATTGRL 701

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           +      QN+P  + +                            +R   IAS G  L+ A
Sbjct: 702 ASSDPNLQNIPIRTETGR-------------------------QIRQAFIASPGHVLISA 736

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA +       +AF++G D++  T +  F V    +  + R   K +   +
Sbjct: 737 DYSQIELRLLAHIGDIPELKRAFKSGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGI 796

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++    A  +  +                              
Sbjct: 797 I--------------YGISAFGLAAQLGIDQG---------------------------- 814

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                   K + ++   + +  +      ++                             
Sbjct: 815 --EAGAYIKTYFERFPGIRDYMDRTKALVKE--------------------------QGF 846

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN--- 616
           +    GR +    + +             R            +Q  + DI+   M+    
Sbjct: 847 VTTVFGRRIHIPAIHSKSGAERQF---GERAAINAP------IQGAAADIIRRAMIRMPG 897

Query: 617 -ATKAGY--DIVLTVHDEI-VCETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYES 670
              +AG    ++L VHDE+         E   +++  +M     P+ A  +PL  E   +
Sbjct: 898 ALAEAGLQTRMLLQVHDELVFEAPEAEAERAVAVIRRIMEGAALPAVALSVPLDVEAKAA 957

Query: 671 KRY 673
             +
Sbjct: 958 GNW 960


>gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48]
 gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48]
          Length = 953

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 99/718 (13%), Positives = 200/718 (27%), Gaps = 179/718 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------- 51
            +D ET S                 ++  +              H               
Sbjct: 362 AVDTETDSLSATASG----------LVGVSLSCAPGSGVYIPLSHQSDDGGLALSGDEFK 411

Query: 52  -----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
                     LK  LE+  V  V  N  ++ +V        I +  +  T++++      
Sbjct: 412 QIALVEALAELKPLLEDPTVLKVGQNIKYDLSVFARY---GIRVAPYDDTMLISYVLEGG 468

Query: 107 ---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                +  + E        +  G   I      +         K       +   EY   
Sbjct: 469 LHGHGMDELSE--------LHLGHTPIPF----KQVAGTGKSAKSFKFVDLKPATEYAAE 516

Query: 164 DVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           D  +T  ++  L+P  ++++           +  +   +   G  +D  +   L+Q   V
Sbjct: 517 DADITLRLWHVLKPQLAQKRLLTVYETLERAMPTVLSDMELAGVRIDPQVLRLLSQDFGV 576

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL 269
              +++ E  ++      +    ++L    F E  L     T T    T  +VL    + 
Sbjct: 577 RMGEIETEAHTVAGHP-FNLNSPQQLGAIFFDEMALPGGKKTATGQWATDVKVLEEIAEK 635

Query: 270 TPQ-----AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                     ++  +  + ++      + LVE  +   +   T   L ++ TGR S    
Sbjct: 636 GTHDQGQRLARLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSYQLASTTTGRLSSNEP 695

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  +    +                         +R+  +A  G KL+ AD + I
Sbjct: 696 NLQNIPIRTLEGRK-------------------------IRTAFVARAGHKLISADYSQI 730

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA +       KAF+ G D++  T +  F V    +  + R   K +         
Sbjct: 731 ELRLLAHIGDIGQLKKAFQDGIDIHALTASEMFGVPVEGMPSEVRRRAKAINF------- 783

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G++                                    +         
Sbjct: 784 -------GIIYGIS------------------------------AFGLGNQLGIDNQEAG 806

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           R  K + ++   +    +   +  + T                            +    
Sbjct: 807 RYIKTYFERFPGIKAYMDAAKEQVKAT--------------------------GYVETIF 840

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKA 620
           GR +   D+    +          R            +Q  + DI+   M+        A
Sbjct: 841 GRRIHIPDIHAKSAGQR---AFAERAAINAP------IQGTAADIIRRAMIRMPGALEAA 891

Query: 621 GYD--IVLTVHDEIVC-ETPDTDEFNASMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673
           G    ++L VHDE++        E   +++  +M      A    +PL+ E   +  +
Sbjct: 892 GLTTTMLLQVHDELIFEAPEAEVEAAKAVIVEVMKHAALPALDISVPLEVEAKAADNW 949


>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS]
 gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS]
          Length = 950

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/700 (15%), Positives = 196/700 (28%), Gaps = 164/700 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEA 60
            +D ET S    T            +   +                 +        LK  
Sbjct: 380 AVDTETTSLDTFT----------AELAGISCSVKPGEAFFVYFGTPGLDAKTTVARLKPL 429

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           LEN ++     N  ++  VLK    +++       T++ +          L  +      
Sbjct: 430 LENPEIPKTGQNLKYDILVLKKY-GVELAPVG-FDTMLASYVLNPEARHNLDDMAALY-- 485

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L  +  K         +         R   +Y   D  +   +   LE  
Sbjct: 486 ----------LGRQTTKYTELVGTGKQTIGIFEVEPRKLSDYACQDADIALRLRYSLEEQ 535

Query: 179 SSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             K  EL  +              +  +G  +D A    L+  V  E   L + +   T 
Sbjct: 536 LEKTPELLEVCRKLEFPLVRVLADMEHKGISIDTAHLEQLSIKVTGELATLTERIFEATG 595

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    ++L   LF    L  +  T+   +T  +VL     L P A  +   R    
Sbjct: 596 -ETFNIDSPKQLGHILFDVLKLPAKKATKTGYSTNVQVLEELAMLHPVASDLLEYR-SLQ 653

Query: 285 RSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           +     +  L + +N   GR+  +      + TGR S      QN+P  +   +E     
Sbjct: 654 KLKSTYIEALPKMINPLTGRVHTSFNQSI-TATGRLSSSNPNLQNIPIRTELGKE----- 707

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   I S  G  L+ AD + IE R+ A ++G+   ++AF
Sbjct: 708 --------------------IRRAFIPSNPGNLLLSADYSQIELRIAAELSGDPMLIEAF 747

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
              ED++  T    F+    ++T D R                          G+     
Sbjct: 748 RNHEDIHAATARVIFDT--KEITPDMRRKA--------------KEVNFGVLYGIQPFGL 791

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           +                                        + +   +  K+  +   ++
Sbjct: 792 SQR------------------------------LGIPQKEAKEIIDTYMAKYPGM---FS 818

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            L    E+  + G                             GR     D+ +  S    
Sbjct: 819 SLQTIIEEAKKKGYVTTL-----------------------MGRRRYVPDLNSANS---N 852

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
             +   R            +Q  + DI+   M + ++          ++L VHDE++ E 
Sbjct: 853 IRKAAERVTMNTP------IQGTAADIIKFAMCSISRELKKGEFRSAMLLQVHDELLFEM 906

Query: 637 PDTDEFNASMLYHL-MTSNPSWA--KGLPLKAEGYESKRY 673
           P  +E     +    M    S    K +P++ +    K +
Sbjct: 907 PPDEEARLREMVERNMIEAASKCGLKNVPVEVDTGSGKNW 946


>gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
 gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624]
          Length = 931

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/701 (14%), Positives = 203/701 (28%), Gaps = 160/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----L 57
             +  D ET S  ++          +  ++  AF ++ H         D  + +     L
Sbjct: 358 KEVCFDTETTSLDEM----------EAQIVGLAFSWEVHKGYYILFPEDFSLAKEWLSLL 407

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   E  ++  +  N  ++  +L    ++++   +   T++            +  + EA
Sbjct: 408 KPFFEAENILKIGQNLKYDLKILANY-DIEVR-GQLFDTMIAHYLLNPDMRHNMDLLAEA 465

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               S      + LI +                       L  EY   D  VT ++    
Sbjct: 466 Y--LSYAPVAIETLIGK---------KGKGQLSMCSVPAELQKEYAVEDTDVTLQLKHTF 514

Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            PL  K++           L  +   +   G  VD A    L++ ++ +   L   +   
Sbjct: 515 LPLLEKDKMTPLFTEVEAPLVRVLAQMEYEGIAVDTAFLSQLSKEINTDLIALQTAIFEQ 574

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVFNNR 280
                 +    ++L   LF +  L  +          T + VLS      P    V   R
Sbjct: 575 AG-ESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASQHPIVANVLEFR 633

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +      + L   +N       T      + TGR S      QN+P  +       
Sbjct: 634 -ALQKLQSTYTDALPREVNPRTGRIHTTFMQAVTATGRLSSNQPNLQNIPIRTPRG---- 688

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  +R   +   E   L+ AD + IE R++A ++ E   +
Sbjct: 689 ---------------------SQIRKAFVPRDENYTLLSADYSQIELRIIAALSEETHMI 727

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++ +T A+ F V    VTK+QR+  K +   +                    
Sbjct: 728 EAFLDGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGII------------------- 768

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                       +    + +     +  + +   + Q + ++  
Sbjct: 769 -------------------------YGVSAIGLSQQTSLSRSQSKELIDTYYQTYPKLKT 803

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
              +      +                          +  +    GR     D+ +    
Sbjct: 804 YIEQQIFFARE--------------------------HGYVQTLLGRRRYLPDIHSRNQV 837

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633
           +     +               +Q  + DI+   M+         K    ++L VHDE++
Sbjct: 838 VRGAAERN---------AVNAPIQGSAADIIKIAMVRIAERLEKEKLATRMLLQVHDELL 888

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            + P  +      ++   M     +A  +PL  E      +
Sbjct: 889 FDVPKRELEVVTPLIREEMGHA--YALSVPLIVEIGTGNNW 927


>gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 921

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/689 (15%), Positives = 196/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  +           
Sbjct: 457 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V            + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQVS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGHNW 917


>gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642]
          Length = 921

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  +           
Sbjct: 457 YLTHTPINFQDIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPVLSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V            + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 921

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/689 (15%), Positives = 196/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKAC-------FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCAIGGDQAHGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  E           
Sbjct: 457 YLTHTPVNFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFETRLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L+ E  ++      +    
Sbjct: 517 VLSDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALECEAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VLS   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLSELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRVHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLARDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TAAEVFGVELEGVTNDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNP---SLRKGAERMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVEQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 921

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ +   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +++   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRTQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+      L        R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNPSLRN---GAQRMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 925

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ +   V  ++ 
Sbjct: 351 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 410

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +++   R   T++ +      +         +     +   K
Sbjct: 411 FAINLLANCAIGGDQAQGIELQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 460

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  E           
Sbjct: 461 YLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 520

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 521 VLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 579

Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 580 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 639

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 640 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 685

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 686 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 733

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V    VT D R   K +                    G++    A  +     
Sbjct: 734 TASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 774

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 775 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRTQAAE- 808

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+      L        R  
Sbjct: 809 -------------------------QGFVETIFGRRLYLPDINAKNPSLRN---GAQRMA 840

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 841 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 894

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 895 EQIRPHMSGAAELA--VPLLVEVGVGNNW 921


>gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
 gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259]
          Length = 921

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/699 (14%), Positives = 200/699 (28%), Gaps = 159/699 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLK 58
            + +D ET     +             ++  +F              +        ++L+
Sbjct: 350 KVALDTETTDKEAIK----------AKLVGMSFSTAPGRAWYIPVSRETDTVKARLELLR 399

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              E  DV IV  N  ++ TVL +   +  P  R   T++            +  +    
Sbjct: 400 PFWEKADVLIVGQNLKYDLTVLASY-GVK-PKGRLFDTMLSHYVVQPELAHNMDYLASVY 457

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              + +    ++LI                +       +   EY   D  VT  +   LE
Sbjct: 458 --LNYRPIPIEQLIG---------PKGRGQRNMGDLDPKDVFEYACEDADVTLRLMAPLE 506

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   +   G C+D      ++        KL+ E+  L 
Sbjct: 507 KAMRENGVEQIFYDIEMPLMPVLARMERNGVCLDTNALQEISSEFTARMVKLEAEIYQLA 566

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                     +++   LF E  +  +   T++    T + VL           ++  +R 
Sbjct: 567 GHP-FMITSPKQVGEVLFGELKIDEKAKKTKSGQYSTSEEVLVRLSHKHEIVGKILAHR- 624

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L + +N       T      + TGR S      QN+P       E   
Sbjct: 625 GLKKLLSTYVEALPKLVNPQTGHLHTTFNQAVTSTGRLSSSNPNLQNIPVRGEDGRE--- 681

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R   I   G     AD + IE R++A ++ +   ++A
Sbjct: 682 ----------------------IRKAFIPEAGDVFFSADYSQIELRIMAHLSKDPHLIEA 719

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+ GED++  T AR F    ++V++D+R   K                      G++   
Sbjct: 720 FKKGEDIHAATAARIFKKDLSEVSRDERRKAKTAN--------------FGIIYGISAFG 765

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  +                                  T    +   +   + +V E  
Sbjct: 766 LAERMD------------------------------VSRTEARELIDNYFSTYPKVKEYM 795

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           +   +   +                             +    GR     D+ ++ + + 
Sbjct: 796 DSSIEKARR--------------------------RGYIETAFGRRQYLADINSHNAVVR 829

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
                  R            +Q  + DI+   M+   +          ++L VHDE+   
Sbjct: 830 GY---AERVAVNAP------IQGTAADIIKLAMIRIDQRLRAEGLKTKMILQVHDELNFS 880

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P  +   A  ++   M S   +   +PL+A+    K +
Sbjct: 881 IPPAELECAKAIIVSEMESA--YQMSVPLEADCGTGKNW 917


>gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
 gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266]
          Length = 946

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/701 (15%), Positives = 204/701 (29%), Gaps = 164/701 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           L +D ET S                 ++  +                 V       +LK 
Sbjct: 375 LAVDTETTSLD----------TFQAELVGISLSIKPKQAWFVYFGKGGVDRRVALDMLKP 424

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117
            LEN  +     N  ++  VLK    +DI       T++ +          L  +   L+
Sbjct: 425 VLENPSLRKTGQNLKYDLLVLKKY-GIDINPVA-FDTMLASYVLDPEAKHNLDDLA--LR 480

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             S K     EL+A             +             +Y   D  +   + +  + 
Sbjct: 481 HLSIKTTTYDELVAD----------GKKKMSILDVPPGELSDYACQDADLALRLQEVFKE 530

Query: 178 LSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              +E+            L  +  T+   G  +D          V  +  +L +++   +
Sbjct: 531 KLLQEKDLLWLCENIEFPLVPVLATMEYHGISIDTDHLKKTETTVSKQIGQLSEKIFEAS 590

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
              V +    ++L   LF   GL     T+   +T  +VL     + P A  +   R   
Sbjct: 591 G-RVFNLDSPKQLAHILFDILGLPSGKATKTGFSTNVQVLEDLAPIHPVAQDLLEYR-SL 648

Query: 284 SRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            +     +  L + +N   G+L  +      + TGR S      QN+P  +   +E    
Sbjct: 649 QKLRNTYIEALPKMINPLTGKLHTSFNQHV-TATGRLSSSHPNLQNIPIRTLIGKE---- 703

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                +R   I S     L+ AD + IE RV A ++G++  ++A
Sbjct: 704 ---------------------IRRAFIPSNPENLLLSADYSQIELRVAAEISGDEKLMEA 742

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F   ED++  T    FN    ++T + R                          G+    
Sbjct: 743 FRNREDIHSATARTIFNTT--EITPEMRRKA--------------KEVNFGVLYGI---- 782

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                          +          + +   + +K+  +    
Sbjct: 783 --------------------------MPFGLSRRLNISRNEAKNIIDTYTEKYPGIF--- 813

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                A +Q I +GK                       +    GR     D+ +    + 
Sbjct: 814 ----NALQQIISDGKE-------------------RGYVSTLLGRRRYIPDLNSRNKNM- 849

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCE 635
              +   R            +Q  + DI+   M      +   K    ++L VHDE++ E
Sbjct: 850 --QKAAERAAMNTP------IQGTAADIIKCAMNLCSTQLRLHKMKSVMLLQVHDELLFE 901

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAK--GLPLKAEGYESKRY 673
           TP+ ++     L   +M           +P++ +    K +
Sbjct: 902 TPENEKHRLKTLVEEVMIDAAKRCGLHNVPVEVDTGIGKNW 942


>gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
 gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13]
 gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40]
 gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1]
          Length = 921

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/689 (14%), Positives = 196/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ +   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +++   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRTQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+      L        R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNPSLRN---GAQRMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+ + M+              ++L VHDE+V E  +      S
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 646 -MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 GQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
 gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188]
          Length = 976

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/709 (14%), Positives = 199/709 (28%), Gaps = 162/709 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            L  D ET S   +             ++ F+              H             
Sbjct: 388 VLAFDTETTSLDPM----------QAELVGFSLALAPGRAAYIPLQHKSGAGDLLGGGMV 437

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                       LK  LE+  V  +A N  ++  V++      I    +  T++++    
Sbjct: 438 EGQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRH---GINTVSFDDTMLISYVLD 494

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E           G   I      +                      Y 
Sbjct: 495 AGTGSHGMDPLSERW--------LGHTPIPY----KDVAGSGKSAVSFDMVDLDRATAYA 542

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P              E+ L  +   + +RG  VD  +   L+  +
Sbjct: 543 AEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLACMEERGIAVDRQVLSRLSGDL 602

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
                  + E+  L      +    ++L   LF +  L     T+    +T  +VL    
Sbjct: 603 AQAAAAYEDEIYELAG-ERFNIGSPKQLGDILFGKMSLSGASKTKTGQWSTSAQVLEDLA 661

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                  +   +  + ++      + L   +N + +   T   + ++ TGR S      Q
Sbjct: 662 AEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSYAMASTSTGRLSSSDPNLQ 721

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R+  IA  G KLV AD + IE R
Sbjct: 722 NIPVRTAEGRK-------------------------IRTAFIAEPGNKLVSADYSQIELR 756

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A  
Sbjct: 757 VLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA-- 814

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                    L++          +  E +   +++    +    E+   +   G       
Sbjct: 815 ---FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFARENGYVETIFGRRAHYP- 870

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
              R  + +V        +A       G A    +R  + +     +             
Sbjct: 871 -DIRASNPQVRAFN---ERAAINAPIQGSAADIIRRAMIRMEDALAE------------- 913

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
                                              Q ++       ++            
Sbjct: 914 -----------------------------------QNLAA----RMLLQVHD-------- 926

Query: 628 VHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
              E++ E PD +      ++ H+M +   P+ +  +PL  +   +  +
Sbjct: 927 ---ELIFEVPDNEVEKTIPVVRHIMENAAMPAVSLAVPLHVDARAAHNW 972


>gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
 gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
          Length = 944

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/701 (14%), Positives = 189/701 (26%), Gaps = 147/701 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + ID ET S   +             ++  +              H              
Sbjct: 356 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQL 405

Query: 51  --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               +   ++  LE+     V  +  ++  V      + +       T++ +        
Sbjct: 406 SREAVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGIT-HDTMLQSYVLASHRN 463

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                 A ++   K              E               A     EY   D  +T
Sbjct: 464 HGMDALAERVLHLKTIT----------YEEVCGKGAAQIGFDEVALDRATEYAAEDADIT 513

Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P               E     + Q +   G  VD       +  +      
Sbjct: 514 LRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERNGVLVDAERLARQSAELGQRLLA 573

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L+QE  +L      +    +++    F +  L +   T     +T + VL    +  P  
Sbjct: 574 LEQEAYALAGQP-FNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLP 632

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             + + R   ++      + L + +N       T      + TGR +      QN+P  +
Sbjct: 633 KLLLDYR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 691

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A  G  +V AD + IE R++A ++
Sbjct: 692 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 726

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+   ++AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A        
Sbjct: 727 GDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 781

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
            + L +   A  +  +     +     +    ++   E    +   G             
Sbjct: 782 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLP-----DI 836

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +           +A       G A    K   + +    +                  + 
Sbjct: 837 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDWLEGS---------------PNA 881

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
               + + +                  ++Q                        VHDE+V
Sbjct: 882 DKPGTPMRSRL----------------VMQ------------------------VHDELV 901

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P  +       L  LM    S    +PL AE      +
Sbjct: 902 LEVPQDELARVRERLPELMCGVAS--LSVPLVAEVGVGSNW 940


>gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a]
 gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a]
          Length = 921

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  +           
Sbjct: 457 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V            + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1]
 gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1]
          Length = 916

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/700 (14%), Positives = 198/700 (28%), Gaps = 158/700 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------M 53
           +  D ET S   +             ++  +F  +          HD            +
Sbjct: 341 VAFDTETTSLNYMA----------AELVGLSFSVEAGEAAYVPVAHDYEGAPEQLDRDWV 390

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + LK  LE+     V  +  ++  VL     + +    +  T++ +      S+     
Sbjct: 391 LEQLKPWLEDDSKAKVGQHLKYDANVLNNYQ-ITLRGIAY-DTMLESYVYNSVSS----- 443

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     +   K L       E       + K  ++    +   Y   D  +T  + +
Sbjct: 444 ---RHDMNTLAS-KFLGHTCVSFEDIAGKGAKQKTFNQIDLEVAAFYAAEDADITLRLHQ 499

Query: 174 RLEPLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            + P      EL             +   +   G  +D  L H  +  +  +  +L+ + 
Sbjct: 500 AIWPKIETTPELVSIFKDIECPLIPVLAKMEQTGALIDPELLHAQSSEIAAKLQELEIKA 559

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
                    +    ++L+  LF + GL +   T     +T + +L    +       +  
Sbjct: 560 HEEAG-ESFNLSSPKQLQVILFEKQGLPVIKKTPKGQPSTAEPILQELAQDYELPRLIME 618

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+      + L E +   GR+  +      + TGR S      QN+P  S     
Sbjct: 619 HR-SLSKLKSTYTDKLPEMIQKTGRIHTSYHQAI-TATGRLSSTDPNLQNIPIRSAEGRR 676

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA +G KLV AD + +E R++A ++ +   
Sbjct: 677 -------------------------IRQAFIAPKGYKLVAADYSQVELRIMAHLSQDSGL 711

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF    D++  T A  F V+  +VT +QR   K +   L Y   A           L 
Sbjct: 712 LDAFTKDADVHKATAAEVFEVSLDEVTTEQRRRAKAINFGLIYGMSA-----FGLAKQLG 766

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +             E +   + +    +E   E    +   G          R     + 
Sbjct: 767 IGRPEAGKYIKRYFERYPGVQQYMENTREGAKEKGYVETIYGR---------RLYLPDIK 817

Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                +     +        G A    KR  + +                          
Sbjct: 818 AKNAMMRQAAERTAINAPMQGSAADIIKRAMIKMHDWL---------------------- 855

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                       Q                    +++ VHDE++ 
Sbjct: 856 ----------------------------QGT-------------DLDVKMIMQVHDELIF 874

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E  + D   A   +  +M ++      +PL  E      +
Sbjct: 875 EVAEKDLEAAQKKIVDIMQNSSK--IDVPLLVEAGVGDNW 912


>gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 921

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/689 (14%), Positives = 196/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+     V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDSVLKTLKPLLEDPGKIKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT+D R   K +                    G++    A  +     
Sbjct: 730 TAAEVFGVELEGVTQDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNP---SLRKGAERMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDASGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGIGNNW 917


>gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024]
          Length = 881

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 92/659 (13%), Positives = 187/659 (28%), Gaps = 164/659 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA E   +V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F +    VT +QR   K +                    G
Sbjct: 722 GLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYG 767

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        ++    + +++  
Sbjct: 768 MS------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPG 797

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E         ++                             +    GR L   D+ ++
Sbjct: 798 VLEYMERTRAQAKE--------------------------QGYVETLDGRRLYLPDIKSS 831

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
                    +               +Q  + DI+   M+              +++ VH
Sbjct: 832 NGARRAAAER---------AAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVH 881


>gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17]
 gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17]
          Length = 921

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/710 (15%), Positives = 189/710 (26%), Gaps = 170/710 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51
           + ID ET S            A    ++  +     +        H              
Sbjct: 340 IAIDTETSSTD----------ATQAELVGVSLCLSPNKACYIPLGHGGTDLLSEVPVQIP 389

Query: 52  --VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
                + +K   E+  V  +  N  F+  VL       I I     T+V++         
Sbjct: 390 VAEALERIKALCEDPSVLKIGQNLKFDMIVL---GERGISIAPHDDTIVMSFDLDAGL-- 444

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                       ++     L       +       +    H    +    Y   D  VT 
Sbjct: 445 ------HGHGMDELAATH-LSHTCLAFKEVVGTGKKQLGFHEVDLKTATRYAAEDADVTL 497

Query: 170 EIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            ++KR +     EQ           L  +   +  RG  VD      L+     +   L+
Sbjct: 498 RLWKRFKARLPMEQATRVYEMVDRPLVPVIANMERRGIKVDRERLSQLSTEFAGQIAGLE 557

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK-KLTPQAI 274
            E+ +L      +    ++L   LF   GL      ++    T    L         + +
Sbjct: 558 GEIHTLAGTP-FTIGSPKQLGEILFDRLGLKGGRKGKSGVYSTDVTELERLARDGGEEIV 616

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +      + S+      + L   +N       T   L  ++TGR S      QN+P  + 
Sbjct: 617 RKILEWRQLSKLKSTYTDALQAQINPKTGRVHTSYSLTGAQTGRLSSTEPNLQNIPIRTE 676

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA +G  L+ AD + IE R+ A MA 
Sbjct: 677 VGR-------------------------QLREAFIAEDGHVLIAADYSQIELRLAAHMAD 711

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                 AF  G+D++  T    F     +V +D R   K +  A+ Y        +    
Sbjct: 712 VPALRDAFANGDDIHSLTAKELFG----EVNRDTRGRAKTINFAILY-----GISRWGLA 762

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L+                                             + +   + ++ 
Sbjct: 763 GRLD---------------------------------------VSADEAQAMIDRYFERF 783

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             ++    E   +  +                                  GR   +  + 
Sbjct: 784 PGINRYIAETLSSVRE--------------------------KGFTETLFGRKTHFPRIA 817

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLT 627
           +             R            +Q  S DI+   M+    A          ++L 
Sbjct: 818 SRNQGERQ---GAERAAINAP------IQGTSADIIKRAMVRMEPALAAAGLGHVRMLLQ 868

Query: 628 VHDEIVCETPDTDEFNASM-LYHLMTSNPSWA--KGLPLKAEGYESKRYR 674
           VHDE+V E P+ D   A   +  +M      A    +PL  E    K + 
Sbjct: 869 VHDELVFEAPEADAEAAGAVIREVMAGAAEPAVKLSVPLGVEIGVGKNWG 918


>gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 832

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/689 (15%), Positives = 196/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 258 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 317

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 318 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 367

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  +           
Sbjct: 368 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 427

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 428 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 486

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 487 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 546

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 547 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 592

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 593 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 640

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 641 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 681

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V            + 
Sbjct: 682 -------------------------GVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE- 715

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 716 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 747

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 748 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQVS 801

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 802 EQIRPHMSGAAELA--VPLLVEVGVGNNW 828


>gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21]
 gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21]
          Length = 928

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 97/703 (13%), Positives = 193/703 (27%), Gaps = 164/703 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
            +   D ET         G         ++  +F  +           D      + Q  
Sbjct: 355 KSFCFDTETT--------GTDANCC--ELVGLSFSVEKGQAWYVPASADQKEAHALVQQF 404

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP--SALKAVGE 114
           K   EN  +  +  N  F+  VL      D+ +      T++            +  + E
Sbjct: 405 KPVFENPAIGKIGQNLKFDILVLSWY---DVKVAGELFDTMLAHYLIDPETRHGMDVLSE 461

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                         LI                        +   +Y   D  +T ++ + 
Sbjct: 462 --NYLGYTPVSITTLIG---------PKGKGQLNMRDVDPKTVSDYAAEDADITLQLKEI 510

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            EP+             E  L  +   +   G  +DV      +  +  E   L+  +  
Sbjct: 511 FEPMLIKVEADKLAHEVEFPLVPVLVDMERVGVRIDVKALSDFSLAIQNEVQILEARIYE 570

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L   LF +  L  +   T+T    T + VL +    +     +   
Sbjct: 571 KAGVP-FNIASPKQLGEVLFDKLQLDPKAKKTKTGQYQTGEDVLMALANKSDIVQDILEY 629

Query: 280 RMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R    +     ++ L + +N   GR+  +     A+ TGR S      QN+P  +    E
Sbjct: 630 RQ-LQKLRSTYVDALPQLINTKTGRVHTSYNQAVAA-TGRLSSNNPNLQNIPIRTERGRE 687

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQW 397
                                    VR   IA +    ++ AD + IE R++A ++ +  
Sbjct: 688 -------------------------VRKAFIARDDEHVILSADYSQIELRLIAEISKDAN 722

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G D++  T A+ + V   +VT +QR   K                      G 
Sbjct: 723 MLDAFAKGLDIHTATAAKVYGVGLEEVTGNQRRNAKA--------------VNFGIIYGQ 768

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  +            + + +  ++  +
Sbjct: 769 S------------------------------AFGLSQSLGIPRREAADMIEQYFIQYPGI 798

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +  N      ++                          +  +     R    RD+ +  
Sbjct: 799 RDYMNNTIAFAKE--------------------------HGYVETLLKRRRYLRDINSAN 832

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
           +   T      R            +Q  + D++   M++             + + VHDE
Sbjct: 833 A---TVRGFAERNAINAP------IQGSAADLIKIAMIHIHQDIQQANLKGKMTMQVHDE 883

Query: 632 IVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +V + P  +      +    M         +P+  E  E + +
Sbjct: 884 LVFDVPRNEVAAFKEIIEARMKGALK--TEVPIVVEIGEGQNW 924


>gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 921

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 102/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ +   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +++   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRTQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+      L        R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNPSLRN---GAQRMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 921

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 102/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ +   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +++   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQDIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRTQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+      L        R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNPSLRN---GAQRMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7]
          Length = 921

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ +   V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPEKIKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +              A +     +   K
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLD--------STAPRHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  +           
Sbjct: 457 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPVLSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V            + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1]
 gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1]
          Length = 941

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 95/712 (13%), Positives = 194/712 (27%), Gaps = 175/712 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + +D ET +   +             ++  +              H              
Sbjct: 361 IAVDTETDNVDPVR----------ANLVGVSLSTAPGKACYIPLAHIGDGLLSETPRQIA 410

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--- 106
                  LK  LE   +  +  N  ++  VL       + +  +  T++L+         
Sbjct: 411 MDAALAKLKPLLEAAHILKIGQNIKYDMVVLAKY---GVDVAPYDDTMLLSYDLDAGLGG 467

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             +  + +              L     + +T            +    +  EY   D  
Sbjct: 468 HGMDELAQRH------------LDHGCIEFKTVCGTGKSQISFDKVTLDVATEYAAEDAD 515

Query: 167 VTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           VT  +++ L+   +           ++ L  +   +   G  VD      L+     E T
Sbjct: 516 VTLRLWQLLKGRLAPEAATRVYELIDRPLVPVLTGMERAGIKVDREELARLSAEFSGEAT 575

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272
           +L+  + +       +    ++L   LF + GL      +    +T    L         
Sbjct: 576 RLEAAIHAEAGTP-FTVGSPKQLGDILFDKMGLKGGRKGKTGVYSTDVTELERLAGDGVA 634

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++  +  + ++      + L + +N       T   +  ++TGR S      QN+P  
Sbjct: 635 IARLVLDWRQLTKLRSTYTDALQQQINPATGRVHTCFSMAVAQTGRLSSTDPNLQNIPIR 694

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           S                              +R   +A  GK ++ AD + IE R+ A M
Sbjct: 695 SDHGRR-------------------------IRDAFVAEPGKLILSADYSQIELRLAAHM 729

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A       AF  G+D++  T    F     +V +D RA  K +  ++             
Sbjct: 730 ADVPALKDAFARGDDIHALTAQEVFG----EVNRDTRARAKTINFSIL------------ 773

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++                                  A          + +   +  
Sbjct: 774 --YGIS------------------------------AWGLAGRLEVSREEAQGMIDRYFS 801

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +   ++                                         +    GR      
Sbjct: 802 RFPGINHYIAATLGQVRD--------------------------QGYVSTLFGRKTHLPW 835

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIV 625
           + + +     +     R+           +Q  S DI+   M+    A          ++
Sbjct: 836 IRSAKQGERQS---AERQAINAP------IQGTSADIIKRAMVRMNPALAAAGLGDVKML 886

Query: 626 LTVHDEIVCE-TPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674
           L VHDE+V E  P+  E  ++++  +M     P     +PL  E      + 
Sbjct: 887 LQVHDELVFELAPEQVEPASAVIRAVMAGAAEPIVRLSVPLGVEIGTGPSWG 938


>gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7]
 gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7]
          Length = 860

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/705 (14%), Positives = 192/705 (27%), Gaps = 166/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DP 51
             + +D ET S   +             ++  +   +          H            
Sbjct: 285 DLVALDTETTSLDPM----------QARLVGLSMSVEAGVACYIPVAHRGPDHAPQLPKQ 334

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--AL 109
            +   L+  LE++    + HN+ ++  VL     + +       T++ A          +
Sbjct: 335 EVLDRLRPWLEDSKAHKLLHNAKYDTHVLMN-EGVALAGVA-EDTMLQAYVLESHKRVNM 392

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           + + E              L       E       +              Y   D   T 
Sbjct: 393 QELAER------------WLGRIGTTYEDLCGKGAKQIGFDEIDVDKASHYACEDADFTL 440

Query: 170 EIFKRLEPLS--SKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           ++ + L P        E  Y            I   G  +D  L    +  +  +  + +
Sbjct: 441 QLHQVLRPKVLADPGLENIYQLEVQASATLAIIERNGVAIDGKLLAAQSHELGQKLLEFE 500

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275
            +   L      +    ++L   LF    L           +T + VL+      P    
Sbjct: 501 AKAYELAGQP-FNLNSPKQLGEILFQRMQLPIVRKTPSGAPSTDEDVLTKLAHDYPLPAL 559

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++      + L + +N       T     A  TGR +      QN+P  +  
Sbjct: 560 LLEYR-GLAKLKSTYTDKLPKMINPRTGRVHTRYAQAAVITGRLASSDPNLQNIPVRTPE 618

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       VR+  +AS G ++V AD + IE RV+A ++ +
Sbjct: 619 GRR-------------------------VRAAFVAS-GGQIVSADYSQIELRVMAHVSDD 652

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +   +AFE G+D++  T A  F  A A+V+ +QR   K +                    
Sbjct: 653 ENLRQAFERGDDIHQATAAEVFGAAQAEVSAEQRRAAKAIN--------------FGLIY 698

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+                                   A        A       +  ++ 
Sbjct: 699 GMGEFGL------------------------------ASNLGITRDAARAYIDRYFARYP 728

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V+    +  +   +                             +    GR L   D+  
Sbjct: 729 GVAAYMEQTKRMANE--------------------------LGYVETVFGRRLWLPDL-- 760

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD--IVLTVH 629
            R           R            +Q  + D++   M+         G    +V+ VH
Sbjct: 761 -RGAKGPRRAAAERAAINAP------MQGTAADLIKMAMVAVQDWLEAEGLKTLMVMQVH 813

Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P  +       L  LM +       +PL AE      +
Sbjct: 814 DELVFEVPADEVDIIKKHLPALMCNVAQ--LSVPLVAEVGVGPNW 856


>gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305]
 gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305]
          Length = 950

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/722 (14%), Positives = 207/722 (28%), Gaps = 177/722 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------- 50
             + +D ET S   +             ++  +              H            
Sbjct: 352 KCIALDTETDSLDSMR----------ANLVGISLALASGEACYIPLAHKTLVTTSAGQGD 401

Query: 51  ------PVM--------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
                   +                 LK  LEN ++  +  N  ++ TV      +++  
Sbjct: 402 LFSSEMETVGYELAKNQLNLTACLAQLKPILENPEIKKIGQNIKYDLTVFANH-GINVQG 460

Query: 91  HRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                T++ + +        +  + +           G + I      E           
Sbjct: 461 VA-FDTMLESYTLNSTGRHNMDDLSDRY--------LGHKTIEF----EAIAGKGKNQLT 507

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGY 197
             +       EY   D  VT ++ + L                 E  L  +   I   G 
Sbjct: 508 FDQIEISTAAEYAAEDADVTMKLHQVLWSQLVQEPTLVKLFDEIELPLVSVLSRIERNGV 567

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE- 256
            +D A     +  ++    +L+QE+ S     V +    ++L+  LF + GL +   T  
Sbjct: 568 LIDPAKLKQQSSEIERRLAELEQEVHSEAGS-VFNLASTKQLQEILFEKLGLPILKKTPK 626

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLG 312
              +T + VL     +  +  ++       S+      + L   +N   GR+  +     
Sbjct: 627 GAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMINAKTGRVHTSYHQAV 686

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  +                              +R   IA +
Sbjct: 687 -TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFIARK 720

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G K+V AD + IE R++A +A ++  LKAF  G+D++ +T +  F V   +VT +QR   
Sbjct: 721 GYKIVAADYSQIELRIMAHLANDEGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNA 780

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   L Y        +   +  L ++         +    + +   F   ++    E 
Sbjct: 781 KAINFGLIYGMS-----EFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEK 835

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
              +  +G          R     +                                   
Sbjct: 836 GYVETLLGR---------RLYLPEIKS--------------------------------- 853

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                      +       +     + +  T   + +    G    + I+Q         
Sbjct: 854 ----------SNAMRRKAAERVAINAPMQGTAADIIKIAMIG---IDRIIQ--------- 891

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESK 671
                      +++ VHDE+V E  +      ++++   M         +PL AE     
Sbjct: 892 -----HSDEIKMIMQVHDELVFEVREDKVEHYSALIKAEMEKAIQ--LSVPLIAEVGIGD 944

Query: 672 RY 673
            +
Sbjct: 945 NW 946


>gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202]
 gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202]
          Length = 950

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/722 (14%), Positives = 210/722 (29%), Gaps = 177/722 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------- 50
             + +D ET S   ++            ++  +    +        VH            
Sbjct: 352 KCIALDTETDSLDSMS----------ANLVGVSLALANGEACYIPLVHKTLVTTSAEQGD 401

Query: 51  ------PVM--------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
                   +                 LK  LEN ++  +  N  ++ TV      +++  
Sbjct: 402 LFANEMETVGYELAKNQLNLTVCLAQLKPILENPEIKKIGQNIKYDLTVFANH-GINVQG 460

Query: 91  HRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                T++ + +        +  + E           G + I      E           
Sbjct: 461 VA-FDTMLESYTLNSTGRHNMDDLAERY--------LGHKTIEF----EAIAGKGKNQLT 507

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGY 197
             +       EY   D  VT ++ + L                 E  L  +   I   G 
Sbjct: 508 FDQIEISTAAEYAAEDADVTMKLHQVLWSQLAQEPALVKLFDEIELPLVSVLSRIERNGV 567

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE- 256
            +D A     +  ++    +L+QE+ S     V +    ++L+  LF + GL +   T  
Sbjct: 568 LIDPAKLKQQSSEIERRLAELEQEVHSEAGS-VFNLASTKQLQEILFEKLGLPILKKTPK 626

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLG 312
              +T + VL     +  +  ++       S+      + L   +N   GR+  +     
Sbjct: 627 GAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMINAKTGRVHTSYHQAV 686

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  +                              +R   IA +
Sbjct: 687 -TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFIARK 720

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G K+V AD + IE R++A +A ++  LKAF  G+D++ +T +  F V   +VT +QR   
Sbjct: 721 GYKIVAADYSQIELRIMAHLANDKGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNA 780

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   L Y        +   +  L ++         +    + +   F   ++    E 
Sbjct: 781 KAINFGLIYGMS-----EFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEK 835

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
              +  +G          R     +                                   
Sbjct: 836 GYVETLLGR---------RLYLPEIKS--------------------------------- 853

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                      +       +     + +  T   + +    G    + ++Q         
Sbjct: 854 ----------SNAMRRKAAERVAINAPMQGTAADIIKIAMIG---IDRVIQ--------- 891

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESK 671
                      +++ VHDE+V E  +      ++++   M         +PL AE     
Sbjct: 892 -----HSDEIKMIMQVHDELVFEVKEDKVEHYSAVIKAEMEKAIQ--LNVPLIAEVGVGD 944

Query: 672 RY 673
            +
Sbjct: 945 NW 946


>gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806]
          Length = 956

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 208/701 (29%), Gaps = 151/701 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PVMPQVL 57
           D ET                   ++     +      +      H         ++ + L
Sbjct: 371 DTETTDLNP----------RVAKLVGIGCCWGKELNAMAYIPIGHQNGDNLNLEIVLEKL 420

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           +  L + +   V  N+ F+  V      + +       T+V +          L+ + + 
Sbjct: 421 RPILASDNYPKVFQNAKFDIDVF-YHQGITVK-GLVFDTMVASYVLHPELTHNLEDLCDR 478

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             L        K L     K                        YC  D   T  + ++L
Sbjct: 479 Y-LDGITSLSYKSLGIPGGK------------TIADLDITTTANYCGLDAYATYLLREKL 525

Query: 176 EPLSSKEQELWY-----------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +   +K   L+            +   + + G  +++     L+Q ++ +   ++++   
Sbjct: 526 QAELTKIPSLYQLFSEVESPLVMVLWQMENYGIKININYLKNLSQQLERDLADIEKKAYE 585

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L   LF    L+ +    T+   +T Q VL   +   P    +  +
Sbjct: 586 SIG-ETFNLGSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQGDHPLIDYILEH 644

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+     ++ L +          T      + TGR S      QN+P  S      
Sbjct: 645 R-TLSKLKSTYVDALPKLAEPKTARVHTDFNQTITSTGRLSSSNPNLQNIPVRSE----- 698

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                S  +R   I  +G  LV AD + IE R+LA ++ E   L
Sbjct: 699 --------------------FSRRIRQAFIPEDGYLLVSADYSQIELRILAHLSQEPVLL 738

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +A+ + +D++  T    F     ++T ++R++GK +   + Y  GA+ F + +      L
Sbjct: 739 EAYRSNQDVHKVTAQLLF--DKGEITPEERSLGKTINFGVIYGMGAQKFARESK-----L 791

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ-KHSRVS 518
                        + +     +    ++        +  +G       + +    +  + 
Sbjct: 792 TVEQGRKFIEKYHQRYAQVFQYLENSKKQAIAQGYVETILGR------RRYFNFDNPLLK 845

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            L                                             R L   D+  +  
Sbjct: 846 RL---------------------------------------------RGLSLHDIDLDSL 860

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634
            LN    QL R            +Q  S DI+   M+   +        ++L VHDE+V 
Sbjct: 861 KLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQNYRARLLLQVHDELVL 914

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E P  +  +    +   M    S    +PL  E      + 
Sbjct: 915 EVPREEWPSLESKIKTTMEEAVS--LTVPLLVEIKAGDNWM 953


>gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 921

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/689 (15%), Positives = 196/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+   T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPGKTKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
 gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10]
          Length = 949

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/700 (14%), Positives = 211/700 (30%), Gaps = 159/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
             +  D ET +  ++          D  ++  +F +            D        ++ 
Sbjct: 377 KAVAFDTETTTLNEM----------DAELVGLSFSYRKGLAYYIPLSEDRSEAIQTLEIF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEA 115
           +E  E  DV+ VAHN  F+  +L+      +       T++               + E 
Sbjct: 427 REFFEKEDVSKVAHNLKFDYKILQQY-GFSLK-GLLFDTMIAHYLLNPDGKHVIDYLSEI 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               + K    + LI +                           Y   D  +T ++++  
Sbjct: 485 Y--LNYKPVALESLIGK---------KGKNQLTFRSLTVEEQTNYAAEDADITWQLYEVF 533

Query: 176 EPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P   KE            L  +   +   G  +D       +  ++ +   L+ ++  L
Sbjct: 534 APQLKKENLEDLFYKVEMPLLRVLAKMELEGVALDEKWLAQESIDLENDLRGLEAKIFEL 593

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +     +L   LF +  L  +   T+T    T + VL            +   R
Sbjct: 594 ADV-EFNVNSPRQLGEILFEKLKLDPKAKKTKTGQYATSEDVLQKLSAKHDIIKYILEYR 652

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L   ++ D     T      + TGR +      QN+P  +       
Sbjct: 653 -TYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTAATGRLASVNPNLQNIPIRTLRG---- 707

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   +A+EGKK++ AD + IE R++A ++ E+  + 
Sbjct: 708 ---------------------QQIRGAFVAAEGKKIISADYSQIELRLIAEISNEENMIL 746

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ GED++V+T AR F++   +VTK QR   K +                    G    
Sbjct: 747 AFQNGEDIHVSTAARLFDIPLEEVTKTQRGQAKTVN--------------FGIIYG---- 788

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                     +     A +     T  +++ +++ + + R+ + 
Sbjct: 789 --------------------------QGAFALAEQTGLSRTEAKQMIESYFENYPRLKKY 822

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             E  Q  ++                             +     R    +D+ +    +
Sbjct: 823 MGEQVQKAQE--------------------------LGYVETILNRKRHLKDINSANFVV 856

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                +               +Q  + D++   M+   +          ++L VHDE++ 
Sbjct: 857 KAHAERN---------AVNAPIQGSAADVIKLAMIKIDQKLSELNLKTKMLLQVHDELLF 907

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E P  +      ++   M S       +PL  E      +
Sbjct: 908 EAPQEEVEMVMKLIKTEMESAFE--TKVPLLVEVGVGDNW 945


>gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 921

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/689 (15%), Positives = 197/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TAAEVFGVELDNVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 921

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/689 (15%), Positives = 198/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G+Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 921

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/686 (15%), Positives = 195/686 (28%), Gaps = 158/686 (23%)

Query: 28  VCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSYFER 77
             ++  +F    H        H             + + LK  LE+ D T V  ++ F  
Sbjct: 350 AQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAKFAI 409

Query: 78  TVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            +L  C         +D+   R   T++ +      +         +     +   K L 
Sbjct: 410 NLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-KYLT 459

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------- 179
                 +       +     + A    G Y   +  +T  + +  E              
Sbjct: 460 HTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLN 519

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    ++L
Sbjct: 520 DIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSPKQL 578

Query: 240 KTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
              L+ + G+ +   T     +T + VL+   +      +V       S+      + L 
Sbjct: 579 GVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLP 638

Query: 296 EAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           E +N   GR+  +     A  TGR S      QN+P  +                     
Sbjct: 639 EQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR---------------- 681

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  T A
Sbjct: 682 ---------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAA 732

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F V    VT D R   K +                    G++    A  +        
Sbjct: 733 EVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI-------- 770

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                        +     +  ++  V +          +    
Sbjct: 771 ----------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE---- 804

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                    +    GR L   D+        +  +   R     
Sbjct: 805 ----------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMAINA 839

Query: 595 GKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SML 647
                  +Q  + DI+ + M+              ++L VHDE+V E  +         +
Sbjct: 840 P------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQI 893

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673
              M+     A  +PL  E      +
Sbjct: 894 RPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 921

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/689 (15%), Positives = 198/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G+Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 915

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 199/703 (28%), Gaps = 168/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPVMPQ 55
            +D ET     L+            ++  +              H            + +
Sbjct: 345 ALDTETTGLDALS----------ADLVGLSLAPAAGEGYYLPVGHSGVEGRQWTTDELKR 394

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNG-LPSALKAVG 113
            L   L +  +  +AHN+ ++  +L       + +      T++ A   G    +LK + 
Sbjct: 395 YLGPVLADVGIGKIAHNAKYDLHILA---GAGLLVAGLDFDTMLAAHLLGESSLSLKGLA 451

Query: 114 -EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              L +    M     LI                K       R   +Y   D  +T  ++
Sbjct: 452 FNRLGIE---MTPITALI----------GEGRHQKCISTCGLRETADYACADADMTLRLY 498

Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           + L P   KE            L  +   +   G  VDV +   ++  +  + T+++  +
Sbjct: 499 QLLLPELEKENQSRLFDEVEMPLVPVIMDMEAAGIAVDVTILSAMSARLGRQLTEIEAAI 558

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279
                    +     +L   LF E  L +   T +   T   VL   K        +   
Sbjct: 559 YEQ-ANRPFNIASPRQLGEVLFEELKLPVGRKTRSGYRTDAAVLEGLKDEHEIVRLILEY 617

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   ++     ++ L   +++ DGRL  +      + TGR S      QN+P   +   E
Sbjct: 618 R-TLAKLKSTYVDILPAMVSARDGRLHTSFNQAR-TATGRLSSSDPNLQNIPVRGQYGRE 675

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G  L+ AD + I+ R LA ++G+   
Sbjct: 676 -------------------------IRQAFVAPPGHFLLAADYSQIDLRALAHLSGDSAL 710

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF   ED++  T    + +   ++T + R   K +                    G++
Sbjct: 711 IAAFNAEEDIHTATAMSLYGLPRDEITPEMRRFAKTVN--------------FGVIYGMS 756

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                   +                                     R  + + +++  V 
Sbjct: 757 GYGLEQATEM------------------------------SREESTRFIQTYFERYPGVR 786

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
              N   +                                 +    GR     D+     
Sbjct: 787 AYLNLTKEQARS--------------------------RGYVETILGRRRYIPDINAAN- 819

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
                     R            VQ  S DI+   M+   +          ++L VHDE+
Sbjct: 820 --RQVREAAERMAINMP------VQGTSADIIKVAMLEVRREMDSQGLESRLLLQVHDEL 871

Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
           + E P  +    S L    M++       +PL+ +      + 
Sbjct: 872 IFEVPQAELMFMSELASRRMSAAVE--LKVPLRVDIKYGANWG 912


>gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/689 (15%), Positives = 198/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G+Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
 gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989]
          Length = 601

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 210/660 (31%), Positives = 310/660 (46%), Gaps = 76/660 (11%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACFNL-DIPI 90
            A+   D    LW  +    +P+ +     N    TI A NS+FE  +        + PI
Sbjct: 1   MAYAIGDEDPILW--LPGDDLPEFV----TNPSEFTIYAWNSFFEWCIWHHVQEWSNAPI 54

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKL--SSQKMEEGKELIARFCKGETHECLYDRNKP 148
             W  T  LA    +P AL A  +AL L    QK + GK LI R  K    +      + 
Sbjct: 55  FLWTDTAALAAVLAMPRALGACAKALGLPQDQQKDKRGKYLIQRLSKPNRGK------RI 108

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
              +    F EYC+ DV V R +  RL PLS++E+++W LDQTIN RG  +D        
Sbjct: 109 QDADLLEEFYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVENAL 168

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
            I+D    KL+QE+  LT   +++    +++  ++  E G  L    +   + VL   + 
Sbjct: 169 LIIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDKAYLETVLED-ET 227

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
           L P A ++   R +  +++  K   L + +  D R  G L + GA+ TGRWSG  F PQN
Sbjct: 228 LPPIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGAT-TGRWSGKHFQPQN 286

Query: 329 LPRPSRSHEELDQIITHL---PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           LPRPS    +    +              DP++ +S  +R  + A EGK+L+V D + IE
Sbjct: 287 LPRPSFKDTDNCIRLFKHADSELLELIYDDPMEALSSSLRGMICAPEGKRLIVVDYSQIE 346

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
           ARVL W+AG++  L     G ++Y  T ++ + V P +V ++QR IGKV  LALGYQGGA
Sbjct: 347 ARVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGYQGGA 406

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
           KAFQ MA   G+ ++                                           + 
Sbjct: 407 KAFQGMAEVYGVEID---------------------------------------TDLADE 427

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           +K  WR  + ++ + W  + +A              K  ++  +  +   N L   LPSG
Sbjct: 428 IKVDWRVANRKIVKFWWGVEKAALNA-----VTHPGKTFEIRAIKFRFTDNYLFCRLPSG 482

Query: 566 RSLVYRDVGNNRS----------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
           R L Y     +              N+ TR+  R+ TYGGKL ENI QAV+RD++AE M+
Sbjct: 483 RLLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYGGKLVENITQAVARDLMAEAML 542

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
               AGY++VL+VHDE++ E  + D  +      LM   P WAKGLP+ +EG+E  RYRK
Sbjct: 543 RVENAGYEVVLSVHDELIAEA-NDDFGSVEEFEQLMCELPVWAKGLPVTSEGFECLRYRK 601


>gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 929

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 101/701 (14%), Positives = 202/701 (28%), Gaps = 160/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----L 57
             +  D ET S  ++          +  ++  A  ++ H         D  + +     L
Sbjct: 356 KEICFDTETTSLNEM----------EAQIVGLALSYEIHKGYYILFPEDFSLAKQWFLLL 405

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   EN  +  +  N  ++  +L     +++    +  T++            +  + EA
Sbjct: 406 KPFFENESILKIGQNLKYDFKILANY-GIEVK-GEFFDTMIAHYLLNPDMRHNMDLLSEA 463

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                      + LI +                       L  EY   D  VT ++    
Sbjct: 464 Y--LGYSPISIETLIGK---------KGKGQLTMRAVPAELQKEYAVEDTDVTLQLKHVF 512

Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            PL  K+Q           L  +   +   G  VD      L++ +  +   L++ + S 
Sbjct: 513 LPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVDTHFLAQLSKEIAADLIGLEKTIFSQ 572

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVFNNR 280
                 +    ++L   LF +  L  +          T + VLS           V   R
Sbjct: 573 -AEESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASKHEIVANVLEFR 631

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     +  L   +N       T      + TGR S      QN+P  +       
Sbjct: 632 -ALQKLQSTYIEALPREVNPHTGRIHTTFMQAVTATGRLSSNQPNLQNIPIRTPRG---- 686

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  +R   +   E   L+ AD + IE R++A ++ E   +
Sbjct: 687 ---------------------SQIRKAFVPRNEDYTLLSADYSQIELRIIAALSEEDHMI 725

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++ +T A+ F V    VTK+QR+  K +   +                    
Sbjct: 726 EAFLEGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGII------------------- 766

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                       +    + +     +  + +   + Q + ++  
Sbjct: 767 -------------------------YGVSAIGLSQQTSLSRSQSKELIDTYYQTYPKLKT 801

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
              +      +                          +  +    GR     DV +    
Sbjct: 802 YIEKQIFFARE--------------------------HGYVQTILGRRRYLPDVYSRNQV 835

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGY--DIVLTVHDEIV 633
           +     +               +Q  + DI+   M+       K G    ++L VHDE++
Sbjct: 836 VRGAAERN---------AVNAPIQGSAADIIKIAMVRIAQRIQKEGLATRMLLQVHDELL 886

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            + P  +   A  ++   M +   +   +PL  E      +
Sbjct: 887 FDVPKKELEVAKALIREEMENA--YTLIVPLIVEIGTGNNW 925


>gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 822

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/689 (14%), Positives = 195/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D   V  ++ 
Sbjct: 248 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 307

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 308 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 357

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  +           
Sbjct: 358 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 417

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 418 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 476

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 477 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 536

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 537 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 582

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 583 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 630

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 631 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 671

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V            + 
Sbjct: 672 -------------------------GVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAE- 705

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 706 -------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMA 737

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 738 INAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQIS 791

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 792 EQIRPHMSGAAELA--VPLLVEVGVGNNW 818


>gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S]
 gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S]
          Length = 928

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/709 (14%), Positives = 196/709 (27%), Gaps = 167/709 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------- 52
           + +D ET    D+  C  C       ++  +     +        H              
Sbjct: 346 VAVDTET----DMLDCVSCA------LVGVSLAVGPNAACYIPVGHGGKDMFAEKPDQLP 395

Query: 53  ---MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
              +   LK  LE+  V  +  N  ++ TVL+      I I  +  T+V++       +L
Sbjct: 396 LPLVLAKLKPLLEDDSVLKIGQNLKYDITVLRRH---GIEIAPYDDTIVMSFDLDAGQSL 452

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                       +      L       +                     EY   D  VT 
Sbjct: 453 A------GHGMDEAARVH-LNHVCISFKDVCGTGRSQISFAEVPLDKATEYAAEDADVTL 505

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            +++  +   +           ++ L  +   +   G  VD      L+         L+
Sbjct: 506 RLWRLFKSRIANEGATRVYELVDRPLVGVIAKMEHEGIKVDREALSRLSAEFTAGIAALE 565

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQ 275
            E+ +L      +    ++L   LF + G       ++    T   +L   K    +   
Sbjct: 566 GEIHALAGQP-FAIGSTQQLGAILFDKMGYKGGRKGKSGAYSTDVTILEQLKAQGAEIAG 624

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              +  + S+      + L   +N D     T   L  ++TGR S      QN+P  +  
Sbjct: 625 KVLDWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLSGAQTGRLSSTDPNLQNIPIRTEV 684

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G  ++ AD + IE R+ A MA  
Sbjct: 685 GR-------------------------QIRHAFVAEPGNVILAADYSQIELRLAAHMADV 719

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  GED++  T  + F     +V +D R   K +  A+ Y        +     
Sbjct: 720 PALKEAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYG-----ISRWGLAG 770

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L ++                                           + +   + ++  
Sbjct: 771 RLEISA---------------------------------------DEAQDMISRYYERFP 791

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            +S    +  +                                      GR   +  +  
Sbjct: 792 GISLYITDTIEKARS--------------------------RGYTETLFGRKTWFPRIKA 825

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLTV 628
              +         R            +Q  S DI+   M     A          ++L V
Sbjct: 826 PVQHERQ---GAERAAINAP------IQGTSADIIKRAMARMGPALAAEGLHRVKMLLQV 876

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674
           HDE+V E P+ D  +A +++  +M     P     +PL  E      + 
Sbjct: 877 HDELVFELPEGDVEHAGAVIRRVMEGAAEPIVKLSVPLGVEIGHGSSWG 925


>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
 gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
          Length = 960

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 100/701 (14%), Positives = 190/701 (27%), Gaps = 147/701 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + ID ET S   +             ++  +              H              
Sbjct: 372 VCIDTETTSIDPML----------AQLVGISLSVQPGRACYIPVAHRGPDVSGLDAAAQL 421

Query: 51  --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               +   ++  LE+   + V  +  ++  V      + +       T++ +        
Sbjct: 422 SREAVLARMRLWLEDEIRSKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 479

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                 A ++   K              E               A     EY   D  +T
Sbjct: 480 HGMDALAERVLHLKTIT----------YEEVCGKGAAQIGFDEVALDRATEYAAEDADIT 529

Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P               E     + Q +   G  VD       +  +      
Sbjct: 530 LRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELGHRLLA 589

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L+QE  +L      +    +++    F +  L +   T     +T + VL    +  P  
Sbjct: 590 LEQEAYALAGQP-FNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLP 648

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             + + R   ++      + L + +N       T      + TGR +      QN+P  +
Sbjct: 649 KLLLDYR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 707

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A  G  +V AD + IE R++A ++
Sbjct: 708 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 742

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+   ++AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A        
Sbjct: 743 GDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 797

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
            + L +   A  +  +     +     +    ++   E    +   G             
Sbjct: 798 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLP-----DI 852

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +           +A       G A    K   + +    +                  + 
Sbjct: 853 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDWLEGS---------------PNA 897

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
               + + +                  ++Q                        VHDE+V
Sbjct: 898 DKPGTPMRSRL----------------VMQ------------------------VHDELV 917

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P  +       L  LM    S    +PL AE      +
Sbjct: 918 LEVPQDELARVRERLPELMCGVAS--LSVPLVAEVGVGSNW 956


>gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 921

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/688 (14%), Positives = 194/688 (28%), Gaps = 156/688 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G+Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L E +N       T        TGR S      QN+P  +                   
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVGVTGRLSSSDPNLQNIPIRTAEGRR-------------- 681

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                      +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  T
Sbjct: 682 -----------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRAT 730

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            A  F V    VT D R   K +                    G++    A  +      
Sbjct: 731 AAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI------ 770

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                          +     +  ++  V +          +  
Sbjct: 771 ------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE-- 804

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                                      +    GR L   D+        +  +   R   
Sbjct: 805 ------------------------QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMAI 837

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-S 645
                    +Q  + DI+ + M+              ++L VHDE+V E  +        
Sbjct: 838 NAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISE 891

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +   M+     A  +PL  E      +
Sbjct: 892 QIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165]
 gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165]
          Length = 954

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 106/724 (14%), Positives = 199/724 (27%), Gaps = 177/724 (24%)

Query: 1   MATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM------ 53
           MA L  +D ET +            A    ++  +FG ++         H   +      
Sbjct: 353 MAELVAVDTETDNLD----------AMQANLVGISFGLENGEACYIPLAHKGKIAQPTQV 402

Query: 54  --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LEN ++  +  N  ++ T+      ++
Sbjct: 403 DLFGESEAELDEVEALLPNQLNKADCLAQLKPILENPNIRKIGQNIKYDLTIFARY-GIE 461

Query: 88  IPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +       T++ + +        +  + E           G + I      E        
Sbjct: 462 LQGVA-FDTMLQSYTLDSTGRHNMDNLAERY--------LGHQTIPF----EELAGKGKH 508

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIND 194
                +       EY   D  +T ++ + L                 E  L  +   +  
Sbjct: 509 QLTFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQIEMPLVSVLSRVER 568

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +D A     +  ++    +L+  +       V +    ++L+  LF + GL     
Sbjct: 569 NGVLIDPAKLLAHSVEIEQRLKELETLVHQEAG-EVFNLASTKQLQEILFNKLGLPILKK 627

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
                 +T + VL    ++  Q   +       S+      + L + +N+      T   
Sbjct: 628 TPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQMINAQTGRVHTSYH 687

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P  +                              +R   IA
Sbjct: 688 QAVTATGRLSSSDPNLQNIPIRNEQGRR-------------------------IRQAFIA 722

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            +G  ++ AD + IE R++A +A +   +KAF  G+D++ +T A  F V    VT +QR 
Sbjct: 723 RDGYVILAADYSQIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRR 782

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   L Y        +      L ++            + +   + F   ++E   
Sbjct: 783 SAKAINFGLIYGMS-----EFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIREKAA 837

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           E    +                                             +R  +P + 
Sbjct: 838 EKGYVETLF-----------------------------------------GRRLYLPEIN 856

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                          R      V  N     T    +        +   N       DI 
Sbjct: 857 SSNQM----------RRKAAERVAINAPMQGTAADIIKVAMIGIDQAVRN-----CEDI- 900

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYE 669
              M+          + VHDE+V E           ++   M         +PL AE   
Sbjct: 901 --AMI----------MQVHDELVFEVKADRVEHYTQLIKAEMEKAIE--LKVPLIAEVGV 946

Query: 670 SKRY 673
              +
Sbjct: 947 GSNW 950


>gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23]
 gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23]
          Length = 545

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 178/595 (29%), Positives = 270/595 (45%), Gaps = 67/595 (11%)

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC---KGETHECLYDRNKPNHR-E 152
           +V     GLP++L  + +AL+L+ +K  EGK LI  FC   K         RN P H  E
Sbjct: 1   MVHGTLLGLPASLDMMSKALRLAQEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASE 60

Query: 153 AWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
            W  F EYC+ DV V R I K++   P    EQ  W LDQ I D+G  +DV L       
Sbjct: 61  KWAKFIEYCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIAC 120

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
            +  +  L ++ + LT   + +   +++LK WL  + G  +  L + +   +L+  + L 
Sbjct: 121 QERYQASLSKKAKGLTG--LENPNSVQQLKDWL-ADMGYPVSSLNKDSVSELLAD-EDLD 176

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
               ++   R   S++++ K   +  A   DGR+RG LQF GA+RTGRW+G +   QNLP
Sbjct: 177 EDVREMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLP 236

Query: 331 RPSRSHEEL---DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           R           D              +   ++S  +R+  IA +G    + D + IEAR
Sbjct: 237 RNYIKDIAEVRKDLKAGDYEAFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEAR 296

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           V+AW+AGEQW+L  F +   +Y  + ++ F++   +V K+ R  GKV ELALGY GG  A
Sbjct: 297 VIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNA 356

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              M                                         A+E        + + 
Sbjct: 357 LIAMG----------------------------------------ALEMGLKENELQGIV 376

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            AWR+    ++ LW  + +  +  I   K+           +    +   L + LPSGR+
Sbjct: 377 DAWRKASPAITSLWRGVEKHAKLAISTRKSQ------KYKGLTFYYEAGILFIKLPSGRN 430

Query: 568 LVYR-------DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
           L Y          G    Y   T +   ++YTYGGKL ENIVQA++RD LA  +      
Sbjct: 431 LAYFRAKLVPGKYGPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDT 490

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           G D V+ VHDE + E  +++  +   L  ++    SWA GLPL+ +G+ S  Y K
Sbjct: 491 GIDTVMHVHDEAITEVQESE-SSVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 544


>gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
 gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1]
          Length = 933

 Score =  386 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/708 (13%), Positives = 186/708 (26%), Gaps = 170/708 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK------ 58
            +D ET              A+   ++  +              H   + Q ++      
Sbjct: 355 AMDTETDGLD----------AQQCRLVGISLAIAPGKACYIPLDHQTTLDQPVRQPAIAE 404

Query: 59  ------EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SAL 109
                   L +  V  +  N  F+  VL+      I       T++++ +         +
Sbjct: 405 IAAALNPILADPTVLKIFQNGKFDLAVLRRHQMPVIAP--IDDTMLISYAQEAGAHGHGM 462

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             +          +  G   I+                P  +        Y   D  VT 
Sbjct: 463 DELS--------VLHLGHSPISYD----QVTGTGRNRLPFPQVPIDKATAYAAEDADVTL 510

Query: 170 EIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            ++  L P              E+ L  +   +   G  VD A    ++    +    ++
Sbjct: 511 RLWHALRPRLRETKSLTVYEQMERPLVPVLCAMEAAGIRVDEAELRRMSADFALRMADME 570

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKL--TPQA 273
            E+  L      +    ++L   LF E GL     ++T    T    L +          
Sbjct: 571 TEIHQLAGRP-FNLASPKQLGEVLFDEIGLTGSKRSKTGAWGTDAATLQAIADESGHALP 629

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R   ++      + LVE +N       T   +  + TGR S      QN+P  +
Sbjct: 630 ARILDWRQ-LAKLKSTYADALVEDVNPRTGRVHTSFQMAITTTGRLSSNEPNLQNIPIRT 688

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   IA  G  L+ AD + IE R+LA +A
Sbjct: 689 EEG-------------------------SRIRRAFIADPGHVLISADYSQIELRLLAHVA 723

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                  +F  GED++  T +  F V    +    R   K +                  
Sbjct: 724 DIPQLKDSFANGEDIHARTASEVFGVPMQGMDSLTRRRAKAINF--------------GI 769

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                  A           +   A+  +
Sbjct: 770 IYGIS------------------------------AFGLARSLAISPGEARQYIDAYFAR 799

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + +      +                              N  ++ P GR      +
Sbjct: 800 YPGIRDYMERTKEEAR--------------------------INGFVVTPFGRRCWVPGI 833

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLT 627
            +             R+            Q  + DI+   M+              ++L 
Sbjct: 834 ADRNPARRGY---AERQAINAPL------QGGAADIIKRAMVRLPAVLADNSFQTRMLLQ 884

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
           VHDE++ E P+ +    + L    M         +PL  E      + 
Sbjct: 885 VHDELLFEAPEAEAEAVARLVTTTMQDAAR--ISVPLVVETGIGTNWG 930


>gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05]
          Length = 970

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/701 (15%), Positives = 212/701 (30%), Gaps = 151/701 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHD-------PVMPQVL 57
           D ET +              +  ++     + + P         H          +   L
Sbjct: 385 DTETTALNP----------REAELVGIGCCWGNKPTDIAYIPIAHKQGKQLRKEQVLDRL 434

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           +  LE+ +   V  N+ F+R + K    +++     + T++ +          L  + E 
Sbjct: 435 QSILESNNYPKVFQNTKFDRLIFK-HQGINLD-GVVLDTMLASYVLHPEKSHKLSELCEQ 492

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                        L            +  +             EYC  D   T  + + L
Sbjct: 493 Y------------LEGITSLDYKDLGIGKKQ-TIADLDIETVAEYCGMDAYATFLLVEPL 539

Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +                EQ L  +   + D G  +D      L++ ++     L++    
Sbjct: 540 KNELKTLSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQHLLSLEENAYQ 599

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L   LF +  L+ +    T+   +T    L   K   P    +   
Sbjct: 600 AAG-EKFNLGSPKQLGHILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEY 658

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+     ++ L E ++  D R+         + TGR S      QN+P  +     
Sbjct: 659 R-TLSKLKSTYIDALPELVDKIDQRIHTNFNQSV-TATGRLSSSNPNLQNIPIRTE---- 712

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                 S  +R   I  +   LV AD + IE R+LA ++ EQ  
Sbjct: 713 ---------------------FSRQIRQAFIPQQDWLLVSADYSQIELRILAHLSQEQVL 751

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L A++  +D++  T    F     ++T  +R +GK +   + Y  G++ F + A      
Sbjct: 752 LNAYKNADDVHSVTARLLF--DKEEITPQERTLGKTINFGVIYGMGSQRFAREA-----G 804

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           ++        N   + +    ++   M++    +      +G       + +        
Sbjct: 805 VSAVEGKEFINKYRQRYAKVFDYLESMKKEAIANGYVTTILGR------RRYFN------ 852

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                          +   +        P        ++  N+ 
Sbjct: 853 -------------------------------FFDDNLYRFRGHDPQ-------NIDLNKI 874

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634
            +N    QL R            +Q  S DI+   M+   +       +++L VHDE+V 
Sbjct: 875 NINYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANLLLQVHDELVF 928

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E P  +       +   M +  +    +PL  E    K + 
Sbjct: 929 EIPHQEWEELEDKIKETMENAVT--LTVPLVVEINTGKNWM 967


>gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
 gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305]
          Length = 932

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/709 (15%), Positives = 205/709 (28%), Gaps = 169/709 (23%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--------H 49
           M     ++ID ET S            A +  ++ +A                       
Sbjct: 353 MKDCEEIYIDLETTSVT----------AMEADIVGWAVAAKPGEAFYIPVRGPAGQQTMD 402

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
           +  +  + +  LEN  + I   N  ++  V K    +++        +V           
Sbjct: 403 NQEVLDIFRPLLENPRIAISNQNIKYDLLVWKRH-GIELQKIGM-DPMVGHYLLDAGARS 460

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             L ++ +       +M    ELI                K           EY   D  
Sbjct: 461 HGLSSLADE--FLKHRMIPISELI----------GTGKNQKRMDEIDIDQVAEYASEDAD 508

Query: 167 VTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVALAHTLNQIVDVERT 216
              +I   +     +++              +   +   G  VD       +++V     
Sbjct: 509 AALQIADIIRDKLHEQELWNLYQDVERPLIGVLAEMEFAGIRVDDEELFRQSELVGRRVE 568

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQA 273
           +L +ELE +      +    ++L+  LF E GL +        +T Q VL     L P  
Sbjct: 569 ELLEELEGMADRP-FNPDSPKQLREVLFDEIGLPVQKRTKTGPSTDQSVLEKLAPLHPLP 627

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            ++   R   ++     L++L + +N   GR+  +   + A+ TGR S      QN+P  
Sbjct: 628 AKIIEYRQ-LAKLKGTYLDSLPKLINQQTGRIHASFNQVVAA-TGRLSSSDPNLQNIPIR 685

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391
           +                              VR   I    G +L+  D + IE RVLA 
Sbjct: 686 TPEGR-------------------------QVRKAFIPGEPGWELLCCDYSQIELRVLAH 720

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +G+    +AF++G+D++    A  F V  A V  D R + K +   + Y          
Sbjct: 721 FSGDAALQEAFQSGKDIHTAVAAEVFEVDEANVDSDMRRVAKAVNFGVIYGQSP-----Y 775

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                LN+         +     +     F     E                        
Sbjct: 776 GLAAALNIPQEQAAEFIDDYFMRYPGVSQFIEETLEQCARSGYA---------------- 819

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                                      +  +RR +             +    GR+    
Sbjct: 820 -------------------------YTMLGRRRPITG-----------IKNTGGRNRNMP 843

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
           +                R           ++Q  + D++   M+N  +          ++
Sbjct: 844 E----------------RTAI------NTVIQGSAADLIKLAMLNVHRELATSGLSARML 881

Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           L +HDE+V ETP  +      L    M +       +PL  +    + +
Sbjct: 882 LQIHDELVFETPVEELEPLRELVHREMVNAHP--LSVPLVVDMKHGENW 928


>gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020]
          Length = 921

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/689 (15%), Positives = 197/689 (28%), Gaps = 158/689 (22%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLHDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT D R   K +                    G++    A  +     
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMSAFGLAKQI----- 770

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  V +          + 
Sbjct: 771 -------------------------GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE- 804

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                       +    GR L   D+        +  +   R  
Sbjct: 805 -------------------------QGFVETIFGRRLYLPDINAK---TQSLRKGAERMA 836

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+ + M+              ++L VHDE+V E  +       
Sbjct: 837 INAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQIS 890

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +   M+     A  +PL  E      +
Sbjct: 891 EQIRPHMSGAAELA--VPLLVEVGVGNNW 917


>gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
 gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101]
          Length = 949

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 211/700 (30%), Gaps = 161/700 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           +  D ET     L             ++  +F ++                  +      
Sbjct: 377 VCFDTETTGIDAL----------HAELVGMSFSYEKGKAFYVPFPESQEEAKVLIDKFVP 426

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117
             EN ++  +  N  ++  +L     + +   +   T++            +  + E   
Sbjct: 427 FFENENIEKIGQNLKYDLKILSNY-GVTVK-GKLFDTMIAHYLINPDMRHNMDILAETY- 483

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 +  + LI +                          EY   D  VT ++ +    
Sbjct: 484 -LKYSPKSIETLIGK---------KGKNQLSMRDVPLEDIKEYAAEDADVTLQLKEIFTA 533

Query: 178 LSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
              K +           L  +   +   G  +DV     +++ +DVE   L++++   T 
Sbjct: 534 ELEKTETKKLFDEIEIPLVSVLADMETEGIRLDVEFLKQMSKEMDVEIKSLEEQIYE-TA 592

Query: 228 GLVSSSRCLEKLKTWLFLETGL------HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           G   +    ++L   LF +  +        +     T + VL+      P   Q+ + R 
Sbjct: 593 GEKFNLASPKQLGDILFDKLKIGGAKQKKTKTGQYATGEEVLTYLANDNPIVKQILDWRQ 652

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L E ++       T      + TGR S      QN+P  +        
Sbjct: 653 MV-KLQSTYILALPEQVDKKTLRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGR---- 707

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +R   +A  E   L+ AD + IE R++A ++GE+  + 
Sbjct: 708 ---------------------QIRKAFVARDENYTLISADYSQIELRIIAALSGEENMIA 746

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ GED++  T A+ F+VA  +V+++QR+  K +                    G++  
Sbjct: 747 AFQNGEDIHRATAAKVFDVALEEVSREQRSNAKTVNF--------------GIIYGVSAF 792

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             ++                                    +    +  A+ + + R+   
Sbjct: 793 GLSNQ------------------------------TSLSRSESAALIDAYYKTYPRLKSY 822

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            +E      +                             +    GR    +D+ +  + +
Sbjct: 823 ISEQVDFARE--------------------------KGYVQTILGRRRYLKDINSANAVV 856

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
            +   +               +Q  + D++   M+N  K          ++L VHDE+V 
Sbjct: 857 RSAAERN---------AVNAPIQGSAADVIKIAMINIHKKLREENWKSKMLLQVHDELVF 907

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  + +      M+ H M +       +PL+ E    K +
Sbjct: 908 DVHNDELEKIQPMIKHEMENAFK--MSVPLEVELGLGKDW 945


>gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
 gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142]
          Length = 970

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 215/700 (30%), Gaps = 149/700 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHD-------PVMPQVL 57
           D ET                   ++     + ++P         H          +   L
Sbjct: 385 DTETTDLNP----------RQANLVGIGCCWGNNPTDIAYIPIGHKQGKQLKKEQVLDSL 434

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           +  LE++D   V  N+ F+R + K    +++       T++ +          L  + E 
Sbjct: 435 RTILESSDYPKVFQNTKFDRLIFK-HQAINLD-GVVFDTMLASYVLHPEKSHKLSELCEQ 492

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                        L    C+      +  +             EYC  D   T  + + L
Sbjct: 493 Y------------LEGITCQNYDELGISKKQ-TIADLDIEKVAEYCGMDAYGTFLLVEPL 539

Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +    +           EQ L  +   + D G  +D      L++ ++ E + L+++   
Sbjct: 540 KNELQQVPTLEQLLLEVEQPLEAVLSIMEDTGILIDTEYLGKLSKELEQELSSLEKKAYD 599

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L   LF +  L+ +    T+   +T    L   K   P    +   
Sbjct: 600 -AAEEKFNLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEY 658

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+     ++ L E +N   +   T      + TGR S      QN+P  +      
Sbjct: 659 R-TLSKLKSTYIDALPELVNKKTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTE----- 712

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                S  +R   I  +   LV AD + IE R+LA ++ E   L
Sbjct: 713 --------------------FSRQIRQAFIPQKDWLLVSADYSQIELRILAHLSQESVLL 752

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            A++  ED++  T    F     ++T  +R +GK +   + Y  G++ F + A      +
Sbjct: 753 NAYQNAEDVHTVTAKLLF--EKEEITPQERNLGKTINFGVIYGMGSQRFAREA-----GV 805

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        N   + +     +   M++    +      +G       + +         
Sbjct: 806 SATEGKEFINKYRQRYAKVFEYLENMKKEAIANGYVTTILGR------RRYFNFFD---- 855

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                   +     + +                                    +  N+  
Sbjct: 856 -----DNLYRFRGHDPQT-----------------------------------IDLNKLN 875

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635
           +N    QL R            +Q  S DI+   M+   +       +++L VHDE+V E
Sbjct: 876 INYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILNYYQANLLLQVHDELVFE 929

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            P+ +    +  +   M +       +PL  E +  K + 
Sbjct: 930 IPEKEWEELNHKIKETMENAVK--LTIPLVVEIHAGKNWM 967


>gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017]
 gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017]
          Length = 957

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/699 (14%), Positives = 209/699 (29%), Gaps = 146/699 (20%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVHDP-------VMPQVL 57
           D ET S              D  ++     +      +      H            + L
Sbjct: 371 DTETDSLSP----------RDAHLVGIGCCWQGEEQAIAYIPVGHKEGDNLDLETALEGL 420

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           +  LE+     V  N+ F+R V      + +       T++         +      +  
Sbjct: 421 RPILESDVYPKVLQNAKFDRLVF-QFQGIQLQ-GVVFDTMLANYVLNPERSHNLTDLSRN 478

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 +  KEL+              + +     +     EYC  DV  T ++ ++LE 
Sbjct: 479 YLQITAKSYKELVK-------------KGQTIADLSITQVAEYCGLDVFTTYQLREKLEA 525

Query: 178 LS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   +   G  +D     TL+  ++ +  +L+     L 
Sbjct: 526 ELAAIPSLHGLFQEVELPLEAVLAVMETSGVRIDQEYLQTLSTQLEADLQRLEAGAYELA 585

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
              + +    ++L   LF    L ++    T+   +T    L   +   P    +   R 
Sbjct: 586 G-EIFNLGSPKQLSEILFGRLELDVKKSRKTKLGYSTDAATLEKLQGDHPIIDVLLEYR- 643

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++     ++ L   +  D     T      + TGR S      QN+P  +        
Sbjct: 644 TLAKLKSTYVDALPMLVRDDTHRIHTDFNQAVTATGRLSSSNPNLQNIPIRTE------- 696

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                              S  +R+  I      L+ AD + IE R+LA ++ E   L+A
Sbjct: 697 ------------------FSRQIRAAFIPESSWILMAADYSQIELRILAHLSQEPRLLEA 738

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           +  G+D++  T      +   Q+  ++R + K++   + Y  G   F + A      +  
Sbjct: 739 YRNGQDVHTLTAQLL--LEKDQIAAEERRLAKIINFGVIYGMGPHRFAREA-----GVKY 791

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH-SRVSEL 520
                      + + +   + + M+         +  +G       + + +     + + 
Sbjct: 792 SEAKDFIQRFYDRYPEVFAYLQRMEREAVSQGYVETILGR------RRYFEFDSRGLKKY 845

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             +  +                                             +V  +   +
Sbjct: 846 RGKALEE------------------------------------------LAEVDLSDIKM 863

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCET 636
           ++  R L R            +Q  S D++   M+    A       +++ VHDE+V E 
Sbjct: 864 SSYDRGLLRAAANAP------IQGSSADLIKIAMVQLQAALEPYKSRLLMQVHDELVLEV 917

Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           P  +  +  S +   M +       +PL AE +    + 
Sbjct: 918 PVDEVDDVRSQIKTTMETALP--LSIPLVAEVHTGANWM 954


>gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul]
 gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul]
          Length = 693

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/730 (26%), Positives = 310/730 (42%), Gaps = 96/730 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYA--EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
             + +D+E+RS  DL  CG+  Y+  E   +++ ++ F+   V+ W+       P  ++E
Sbjct: 3   DEIRLDYESRSEEDLPTCGLDIYSAHESTEILMASWSFNGGRVQQWEIRDGK-FPAEVRE 61

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           ALE+ +V   A N+ FER + +    ++ P   W CT+  A        L+ VG  L L 
Sbjct: 62  ALEDPNVIKRAWNAQFERVMTRRVLKINTPYKNWRCTMARAYMLSFAGNLEMVGGQLGLP 121

Query: 120 SQK--MEEGKELIARFCKGETHECLY-DRNKPN--HREAWRLFGEYCKGDVTVTREI--F 172
             K  +  GK+LI  F K +        +      +   W  F  Y + DV     I  +
Sbjct: 122 QDKVKLATGKKLINLFSKPQRITKKNPHKWLDWQTNPFEWDDFLIYNQQDVIAEAAIDEW 181

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P   +E EL+ LDQ INDRG  VD+   ++   + D  + +L +++ ++T   + +
Sbjct: 182 LAPYPTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQMRAITG--LEN 239

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVL 289
               ++LK W+    G   +DL + T ++VL+ +K          +V   RM+++R++V 
Sbjct: 240 PNSPQQLKPWVKAR-GYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKMRMQSARTSVG 298

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL---PRPSRSHEELDQIITHL 346
           K    V  +    RLR  LQF GA RT RW+G      NL   P+      + D  +  +
Sbjct: 299 KYKKFVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEPDGDNDWALCTV 358

Query: 347 PTSITSDP---------DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
             +I +           +P+  ++ CVRS + A EG + V  DL+ IE  V+AW+A  Q 
Sbjct: 359 TNAIRAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQP 418

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L  F  G   Y     R + V   +VT   R + K   L  GY+ G          TGL
Sbjct: 419 LLNVFREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGL 478

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                               +             K +R+ +  V
Sbjct: 479 ------------------------------WGYAENMGIDMSRQEAHDSVKMYREAYPEV 508

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---- 573
            +LW +L  A  +TI+            V  V  +     L+ +LPSGR + Y       
Sbjct: 509 PQLWKDLEAAIIRTIKTKAVT------RVRYVSFEIVGEFLVAILPSGRRMYYHRPRIEK 562

Query: 574 ------------------GNNRSYL---------NTTTRQLTREYTYGGKLTENIVQAVS 606
                             G+ ++Y          N   ++  R+ ++GGK+TEN+VQA++
Sbjct: 563 KKFQKKNWKTGELLWNEDGSPQTYEKIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQAIA 622

Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKA 665
           R+IL  G+ NA K G +IVL VHDEIV      D      +L   MT+   W + +P+ A
Sbjct: 623 REILKYGLFNAHKKGLNIVLHVHDEIVTLRKIGDASKGLHVLKECMTAKRKWYEEMPVGA 682

Query: 666 EGYESKRYRK 675
            G+ +  YRK
Sbjct: 683 AGWSAAFYRK 692


>gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999]
          Length = 931

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 96/705 (13%), Positives = 199/705 (28%), Gaps = 161/705 (22%)

Query: 8   FETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
            E  S   L          +  +  ++  +             +HD              
Sbjct: 345 IEKCSSAPLFGLQTFTSSAHYMEAQIVGISLCVAAGDACYIPLLHDYPDAPEQLNSQWAL 404

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           + L   L+N+    V HN  F++ VL     + +    +  T++ +           ++A
Sbjct: 405 EQLTPLLKNSKNQKVGHNLKFDKNVLANH-GITLNGVAY-DTMLESYVLNSVVTKHHIEA 462

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G   I      E+      +    ++        +   +  +   +
Sbjct: 463 LSLHY--------LGHSPITL----ESIAGKGAKQLTFNQIGLAEAAPFAAENADIILRL 510

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   +   G  +D       +Q +      L++
Sbjct: 511 HQLLWPQLVNAPELANVVSELEVPLSQVLSRMEQTGVLIDSQKLAQQSQSLAERILHLEE 570

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
            +  +      +    ++L+  LF +  L +   T     +T + VL       P    +
Sbjct: 571 TVHEMAG-EAFNLGSTKQLQHILFEKMNLPVIKKTPKGAPSTGEEVLQELALNYPLPKAI 629

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L + ++       T      + TGR S      QN+P  +   
Sbjct: 630 MEYR-GLTKLKNTYTDKLPKLIDHRTGRVHTSYQQAITATGRLSSTDPNLQNIPIRTEEG 688

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +                         VR   IA  G K+V AD + IE R++A ++ + 
Sbjct: 689 RK-------------------------VREAFIARPGYKIVAADYSQIELRIMAHLSSDS 723

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G D++  T +  F VA   VT +QR   K +                    G
Sbjct: 724 GLLHAFANGLDVHKATASEVFGVALEHVTSEQRRSSKAINF--------------GLIYG 769

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++                                  A +        +     + +++  
Sbjct: 770 MS------------------------------AFGLAKQLNIPRGDAQHYMDTYFERYPG 799

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +   +  +  +                              +    GR L   ++ ++
Sbjct: 800 VLQYMQDTREEAK--------------------------AQGYVKTVFGRRLYLPEITSS 833

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVH 629
                    +               +Q  + DI+   M+           +   +++ VH
Sbjct: 834 NGARRAGAER---------AAINAPMQGTAADIIKLSMLAVDNWIQTQDQSDICMIMQVH 884

Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE++ E  +      S  +  LM +  S A  +PL  E    + +
Sbjct: 885 DELIFEIKEQKVDAYSTKIIELMENAVSLA--VPLTVEFDVGENW 927


>gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510]
 gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510]
          Length = 972

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/708 (14%), Positives = 204/708 (28%), Gaps = 161/708 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------- 52
           L +D ET S                 ++  +   +          H              
Sbjct: 384 LAVDTETDSLTP----------ATATLVGVSLSTEPGIACYIPLAHKAEGSAAAGQLDFD 433

Query: 53  ------------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
                          +LK+ LE+  V  + HN  F+  +        I +     +++++
Sbjct: 434 APPPPAQIPAAEAMAILKDVLEDPSVLKIGHNFKFDHQLFGRN---GITVSPVDDSMLIS 490

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                       G +      ++ E   L       +             R        Y
Sbjct: 491 YVLE--------GGSHGHGMDELAELH-LAYTPIPFKEVCGTGKNQITFDRVPLDKALAY 541

Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  ++  L+P            + ++ L  +   +   G  +D      L+Q 
Sbjct: 542 AAEDADITLRLWTLLKPRLVDSRMVTVYETLDRPLVPVVANMEREGVRIDQQALARLSQD 601

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
           + V   ++++E+ +L      +    ++L   LF    L      +    +T   VL   
Sbjct: 602 LSVRLAEIEKEVHALAGQS-FNIGSPKQLGEILFDTLKLGTGKKGKTGAYSTDSSVLEEL 660

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
            +      Q   +  + ++      + L E ++       T   L A+ TGR S      
Sbjct: 661 AEQGHTIAQRVLDWRQLAKLKSTYTDALQEKISPVTGRVHTAFALAATNTGRLSSTDPNL 720

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +    +                         +R   +AS G KL+  D + IE 
Sbjct: 721 QNIPVRTEEGRK-------------------------IRRAFVASPGHKLLSVDYSQIEL 755

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A MA  Q    AF  G D++  T A+ F +  AQ+T D R   K +   + Y     
Sbjct: 756 RLVAEMADIQALKDAFRDGLDIHAATAAQVFGIPLAQMTPDIRRKAKAINFGIIYGISG- 814

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                     L +          +  E + + + +    +    +H       G  C   
Sbjct: 815 ----FGLGRQLGIAPGEANAFIKTYLERFHELKVWMEATKAFARQHGYVATLFGRRC--- 867

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                     + +       A  +     +AI A  +     +  +              
Sbjct: 868 ------YMPGIQD-----KNAARRAFAERQAINAPIQGTAADIMKRAMNRM--------- 907

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
                D                               A++             +   ++L
Sbjct: 908 ----PD-------------------------------ALAA----------AGSNARMLL 922

Query: 627 TVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE++ E P+ +  +A+ +   +M        G+PL AE      +
Sbjct: 923 QVHDELLFEVPEAEVDDAARIVREVMEGAAH--LGVPLVAEAGIGDNW 968


>gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106]
 gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106]
          Length = 927

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 208/701 (29%), Gaps = 146/701 (20%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PVMPQVL 57
           D ET +              D  ++     +      +      H          + + L
Sbjct: 337 DTETTALEP----------RDAKLVGIGCCWGSEKTEIAYIPLEHKTGNQLKKETVLEAL 386

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           +  LE+        N+ F+R + K    +++       T++ +          L  +   
Sbjct: 387 RPILESNKYPKALQNAKFDRLIFK-VQGINLA-GVVFDTMLASYVLNPDDSHNLTELSRK 444

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
              S    +  K+L               + +           EYC  DV  T  I  +L
Sbjct: 445 YLDSGILAKSYKQL------------SLSKKQTIADLDIPTAAEYCGLDVYATYLIVPKL 492

Query: 176 EPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                   EL             +   +  +G  ++V     L+  ++ +  +++++   
Sbjct: 493 RKELQDFPELHKLLLDIEQPLEPVLAEMEYQGIRINVDYLKQLSSQLEKKLEEIEKQAYQ 552

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L   LF    L  +    T+   +T  +VL   K   P    +  +
Sbjct: 553 EAGT-EFNLGSPKQLSKLLFETLELSTKKSRKTKTGYSTDAKVLEKLKGDHPIIDSILEH 611

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++     ++ L E ++   +   T      + TGR S      QN+P  +      
Sbjct: 612 R-TLAKLKSTYVDALPELVHPQTQRIHTDFNQAITTTGRLSSSNPNLQNIPIRTE----- 665

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                S  +R   +   G  LV AD + IE R+LA ++ E   +
Sbjct: 666 --------------------FSRQIRQAFLPEPGWLLVSADYSQIELRILAHLSDEPILV 705

Query: 400 KAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +A++T  D++  T    F       VT ++R  GK +   + Y  GA  F +      + 
Sbjct: 706 EAYKTNRDIHTVTAQFLFEKDDIKDVTPEERRFGKTINFGVIYGMGALRFSRE-----MK 760

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +NT           +++E    +    ++           +G       + +        
Sbjct: 761 VNTNKAKEFIERFNQQYEKLFEYLEEQKKQAISQGYVTTLLGR------RRYFH------ 808

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                     + P +   K+     + L            +   
Sbjct: 809 -------------------------FESPSLKALKESPLEDIPL------------DELK 831

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634
            +     Q  R            +Q  S DI+   M+            ++L VHDE+V 
Sbjct: 832 KIGQNDAQFLRAAANAP------IQGSSADIIKIAMVKLRDVLQNYRAKLLLQVHDELVF 885

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E P  +       +   M     ++  +PL  + +    + 
Sbjct: 886 EVPPEEWEELQPQIKQTMEDA--YSLKVPLLVDIHAGDNWM 924


>gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
 gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans]
          Length = 918

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/703 (15%), Positives = 207/703 (29%), Gaps = 162/703 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM---PQVLK 58
             + +D ET SP  +             ++  +F  D+         H   +      + 
Sbjct: 343 KQISLDTETDSPEPMR----------ANLVGISFCMDEKKAYYLPLGHQLAVNLPLPEVL 392

Query: 59  EALEN--TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113
             LE+      ++ HN  F+  VL     L++  +    T++ A          +L+   
Sbjct: 393 RHLEDALKGKLLLGHNLKFDLIVLARN-GLELD-NPLFDTMLAAYILDPGTLNYSLETCA 450

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L   + KM    +LI                             Y   D     +++ 
Sbjct: 451 --LNELNYKMIPISDLI----------GKGKNQSTFDLVEPEKACIYSAEDAWAVYKLYP 498

Query: 174 RLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                             E  L  + Q +   G  +D ++   ++  +++E   L  ++ 
Sbjct: 499 VYRRKVDFSVMANLFDTIELPLIKVLQQMEMNGVAIDCSVLSEISHQINLELKTLTDKIY 558

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
           +       +    ++L   LF E  L     T+   +T   VL         A  +   R
Sbjct: 559 AFAGY-EFNINSTQQLAKLLFEEKKLPYGRKTKTGYSTDNSVLEELAIDYEIAGIIIQYR 617

Query: 281 MRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
              S+     ++ L + +N   GR+  +      + TGR S      QN+P  +    E 
Sbjct: 618 Q-LSKLQSTYVSALPKMINPQTGRIHSSFNQ-TVTSTGRLSSSNPNLQNIPVRTEIGRE- 674

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWK 398
                                   +R    A +    ++ AD + IE R+LA M+ ++  
Sbjct: 675 ------------------------IRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVL 710

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF+   D++    A+ FNV   +VT DQR   K +                    G+ 
Sbjct: 711 IEAFKQDLDIHKRMAAKIFNVDIEKVTPDQRRAAKTINF--------------GILYGMG 756

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                           + + E        + +   +  +   + 
Sbjct: 757 Q------------------------------RKLSRELGISLNEAKDIIDGYYAQFPSIR 786

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
              N+      Q                                  GR L   ++ +   
Sbjct: 787 NFINQCVNKARQQH--------------------------YAETLFGRRLYLPNIDSKNQ 820

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGYDIVLTVHDEIV 633
            L +   +  R            +Q  + D++   M+N  K         ++L VHDE++
Sbjct: 821 GLKS---EAERIA------VNMPIQGTAADLIKIAMLNIHKQIDKREDIKMILQVHDELL 871

Query: 634 CETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRY 673
            E           +    M S   P +A+ + LK +    K +
Sbjct: 872 FEVQQEALEETKNIVKTCMESALPPKYAEKVHLKTDVGVGKNW 914


>gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
 gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755]
          Length = 954

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/724 (14%), Positives = 200/724 (27%), Gaps = 177/724 (24%)

Query: 1   MATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ---- 55
           MA L  +D ET +            A    ++  +FG ++         H   + Q    
Sbjct: 353 MAELVAVDTETDNLD----------AMQANLVGISFGLENGEACYIPLAHKGKITQPTQV 402

Query: 56  ----------------------------VLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LEN ++  +  N  ++ T+      ++
Sbjct: 403 DLFGESEAELDEVEALLPNQLNKADCLVQLKPILENPNIRKIGQNIKYDLTIFARN-GIE 461

Query: 88  IPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +       T++ + +        +  + E           G + I      E        
Sbjct: 462 LQGVA-FDTMLQSYTLDSTGRHNMDNLAERY--------LGHQTIPF----EELAGKGKH 508

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIND 194
                +       EY   D  +T ++ + L                 E  L  +   +  
Sbjct: 509 QLTFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQIEMPLVSVLSRVER 568

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +D A     +  ++    +L+  +       V +    ++L+  LF + GL     
Sbjct: 569 NGVLIDPAKLLAHSVEIEQRLKELETLVHQEAG-EVFNLASTKQLQEILFNKLGLPILKK 627

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
                 +T + VL    ++  Q   +       S+      + L + +N+      T   
Sbjct: 628 TPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQMINAQTGRVHTSYH 687

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P  +                              +R   IA
Sbjct: 688 QAVTATGRLSSSDPNLQNIPIRNEQGRR-------------------------IRQAFIA 722

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            +G  ++ AD + IE R++A +A +   +KAF  G+D++ +T A  F V    VT +QR 
Sbjct: 723 RDGYVILAADYSQIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRR 782

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   L Y        +      L ++            + +   + F   ++E   
Sbjct: 783 SAKAINFGLIYGMS-----EFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIREKAA 837

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           E    +                                             +R  +P + 
Sbjct: 838 EKGYVETLF-----------------------------------------GRRLYLPEIN 856

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                          R      V  N     T    +        +   N       DI 
Sbjct: 857 SSNQM----------RRKAAERVAINAPMQGTAADIIKVAMIGIDQAVRN-----CEDI- 900

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYE 669
              M+          + VHDE+V E           ++   M         +PL AE   
Sbjct: 901 --AMI----------MQVHDELVFEVKADRVEHYTQLIKAEMEKAIE--LKVPLIAEVGV 946

Query: 670 SKRY 673
              +
Sbjct: 947 GSNW 950


>gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
 gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264]
          Length = 994

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/724 (14%), Positives = 195/724 (26%), Gaps = 184/724 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
            +  D ET +            A    +   +     +        H             
Sbjct: 398 VVGFDTETDALS----------ATHAGLCGVSLAIGPNDACYVPLTHEHPPVEGAGGLDF 447

Query: 50  --------------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                          P +   LK  LE+  V  V  N  ++  V+       I +     
Sbjct: 448 GGDTDARPPLDQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMAR---RGIRVAPIDD 504

Query: 96  TLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           T++++           +  +          +  G E I                K     
Sbjct: 505 TMLISYVLEGGLHGHGMDELSR--------LHLGHEPIPFKS----VAGTGKAQKSFKHV 552

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE----------LWYLDQTINDRGYCVDVA 202
             +    Y   D  VT  +++ L+P  + E+           +  +   +  RG  VD A
Sbjct: 553 ELKPATCYAAEDADVTLRLWRILKPRLATERLATVYETLERGMPAVLADMELRGIRVDPA 612

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258
               L+    +   +L+ +   +      +     ++   LF E  L     T +    T
Sbjct: 613 RLRRLSSEFGLRMAELEAQAHEIAGRP-FNVGSPRQIGEILFGELNLPGGKKTASGQWET 671

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
               L    +       + + R   S+      + LV AM+       T   L A+ TGR
Sbjct: 672 GAATLEGLAETHALPRVLLDWRQ-LSKLKGTYTDALVAAMDPQTDRVHTSYQLAAATTGR 730

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
            +      QN+P  + +                            +R   IA +G  L+ 
Sbjct: 731 LASSDPNLQNIPIRTETGR-------------------------QIRQAFIAKDGHVLIS 765

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA +       +AF+ G D++  T +  F V  A +  + R   K +   
Sbjct: 766 ADYSQIELRLLAHIGDIPELKRAFKAGIDIHTATASEMFGVPVADMDPETRRRAKAINF- 824

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    A+ +  +                             
Sbjct: 825 -------------GIVYGISAFGLANQLGIDQG--------------------------- 844

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                    K + ++   +    +                                    
Sbjct: 845 ---EAGAYIKTYFERFPGIRTYMDATRAEVRS--------------------------LG 875

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-- 616
            +    GR +    + +             R            +Q  + DI+   M+   
Sbjct: 876 FVSTVFGRKIHIPAIASKSGAERQF---GERAAINAP------IQGAAADIIRRAMIRMP 926

Query: 617 --ATKAGY--DIVLTVHDEIVC-ETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYE 669
                AG    ++L VHDE+V        E    ++  +M     P+ A  +PL  +   
Sbjct: 927 GALEAAGLETKMLLQVHDELVFEAPEAEVEAAIPLIKRIMEGAAEPAVALSVPLVVDARA 986

Query: 670 SKRY 673
           +K +
Sbjct: 987 AKNW 990


>gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 921

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/713 (14%), Positives = 204/713 (28%), Gaps = 175/713 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--- 59
            + +D ET +            A    ++  +   +        C H        K    
Sbjct: 340 QVAVDTETDNLD----------ATQAQLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQM 389

Query: 60  -----------ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106
                       LE+  +  +  N  ++  VL       I +  +  T++L+        
Sbjct: 390 DLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRY---GISVQPFDDTMLLSYDLDAGRH 446

Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              +  +               + I+                  +         Y   D 
Sbjct: 447 GHGMDELSLLY--------FDHQPISFKS----VCGTGKSAITFNHVPIPAATRYAAEDA 494

Query: 166 TVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
            +T  ++  L+P              ++ L  +   +   G  VD    H L+     + 
Sbjct: 495 DITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDI 554

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
           ++L++E+ +L           ++L   LF   GL     +++    T    L        
Sbjct: 555 SRLEEEIYALAGCR-FLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLAAEGE 613

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                     + S+      + L+  +N +     T   L  ++TGR S      QN+P 
Sbjct: 614 VIASKILEWRQLSKLKSTYSDALIGKINPETGRVHTSFSLVGAQTGRLSSTDPNLQNIPI 673

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +    E                         +R+  IA +G  L+ AD + IE R+ A 
Sbjct: 674 RTEIGRE-------------------------IRNAFIAKKGHLLLSADYSQIELRLAAH 708

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A E+  L+AF+  ED++  T  + F      V ++ RA  K +  A+ Y          
Sbjct: 709 VADEKALLQAFQEKEDIHALTAKQLFGH----VDRESRARAKTINFAILY---------- 754

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  ++ +                                  + +   + 
Sbjct: 755 ----GISAWGLAARLEIDRFS------------------------------AQEMIDRYF 780

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           ++   +    +                                  +  +  P GR     
Sbjct: 781 ERFPAIRHYIDRTLDFVR--------------------------LHGYVETPFGRKTHLP 814

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-------I 624
            + + +           R+           +Q +S DI+   M+    A          +
Sbjct: 815 AIKSRKVTERQA---AERQAINAP------IQGMSADIIKRAMVRMEPALAKVGLSSVKM 865

Query: 625 VLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674
           +L VHDE++ E P+ D   A  ++  +M     P     + L+ E      + 
Sbjct: 866 LLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSVDLEVEIGTGTSWG 918


>gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
 gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756]
          Length = 966

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/715 (14%), Positives = 196/715 (27%), Gaps = 175/715 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            +  D ET +                 +   +              H             
Sbjct: 379 VVAFDTETDALSS----------ATAGLCGVSLAIAPGEACYIPVGHCEKEGLALEAAAD 428

Query: 52  -------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                   +   LK  LE+  V  VA N+ ++  VL       I +     T++++    
Sbjct: 429 LVQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH---GIQVSPIEDTMLISYVLE 485

Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  +  + E        +  G + I      +               A      Y 
Sbjct: 486 AGLHGHGMDELSE--------LWLGHKPIPF----KQVAGTGKAQISFKHVALSEATAYA 533

Query: 162 KGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  +++ L+P  ++E          + +  +   + + G  VD      L+   
Sbjct: 534 AEDADVTLRLYETLKPRLAREGLLTVYETLERPMPAVLAAMENDGIKVDPEALRRLSNEF 593

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
            +   + +     L      +    +++   LF E  +     T     +T   VL S  
Sbjct: 594 SLRMAEFEARATELVGRP-FNLGSPKQIGDVLFGEMQIKGGKKTATGQWSTDSDVLESLA 652

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   + + R   S+        LV A+        T   L A+ TGR S      Q
Sbjct: 653 LEHELPRVLLDWRQ-LSKLKGTYTENLVAAIAERTGRVHTSYALAATTTGRLSSSDPNLQ 711

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    +                         +R   IA +GK L+ AD + IE R
Sbjct: 712 NIPVRTEEGRK-------------------------IRKAFIAPQGKVLISADYSQIELR 746

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +       +AF+ G D++  T +  F+     +    R   K +            
Sbjct: 747 LLAHIGDIPQLKRAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAIN----------- 795

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++                                  A +            
Sbjct: 796 ---FGIVYGIS------------------------------AFGLANQLGIPQGEAGAYI 822

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           K + ++   +    +       +                          +  +    GR 
Sbjct: 823 KTYFERFPGIQAYMDATKAFVRE--------------------------HGYVTTIFGRK 856

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
           +   ++               R            +Q  + D++   M+   +A       
Sbjct: 857 INIPEIQAKSVGQRQF---AERAAINAP------IQGAAADVMRRAMIRMPEALQAAGLS 907

Query: 622 YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE+V E P+ +   A  ++ ++M     P+ A  +PL  E   +  +
Sbjct: 908 ARMLLQVHDELVFEAPEAEAETARGVIANVMEKAAEPAVALSVPLTVEVRAAHNW 962


>gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
 gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843]
          Length = 956

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 206/701 (29%), Gaps = 151/701 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PVMPQVL 57
           D ET                   ++     +      +      H         ++ + L
Sbjct: 371 DTETTDLNP----------RVAKLVGIGCCWGKELNAMAYIPIGHQSGDNLNLEIVLEKL 420

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           +  L + D   V  N+ F+  V      + +       T+V +          L+ + + 
Sbjct: 421 RPILASDDYPKVFQNAKFDIDVF-YHQGITVK-GLVFDTMVASYVLHPELTHNLEDLCDR 478

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             L+       K L     K                        YC  D   T  + ++L
Sbjct: 479 Y-LTGITSLSYKSLGIPAGK------------TIADLDIPTTANYCGLDAYATYLLREKL 525

Query: 176 EPLSSKEQELWY-----------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +   +K   L+            +   + + G  +++      +Q ++ +   +++    
Sbjct: 526 QAELTKIPPLYQLFSEIESPLVMVLWQMENYGIKININYLKNFSQQLERDLAYIEKNAYE 585

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L   LF    L+ +    T+   +T Q VL   +   P    +  +
Sbjct: 586 SIG-ETFNLSSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQGDHPLVDYILEH 644

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+     ++ L +          T      + TGR S      QN+P  S      
Sbjct: 645 R-TLSKLKSTYVDALPKLAEPKTARVHTDFNQTITSTGRLSSSNPNLQNIPIRSE----- 698

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                S  +R   I   G  LV AD + IE R+LA ++ E   L
Sbjct: 699 --------------------FSRRIRQAFIPENGYLLVSADYSQIELRILAHLSQEPVLL 738

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +A+ + +D++  T    F     ++T ++R++GK +   + Y  GA+ F + +      L
Sbjct: 739 EAYRSNQDVHKVTAQLLF--DKREITPEERSLGKTINFGVIYGMGAQKFARESK-----L 791

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ-KHSRVS 518
                        + +     +    ++        +  +G       + +    +  + 
Sbjct: 792 TVEQGRKFIEKYHQRYAQVFEYLENSKKQAITQGYVETILGR------RRYFNFDNPLLK 845

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            L                                             R L   D+  +  
Sbjct: 846 RL---------------------------------------------RGLSLHDIDLDSL 860

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634
            LN    QL R            +Q  S DI+   M+   +        ++L VHDE+V 
Sbjct: 861 KLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQNYRARLLLQVHDELVL 914

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E P  +  +    +   M    S    +PL  E      + 
Sbjct: 915 EVPREEWPSLESKIKTTMEEAVS--LTIPLLVEIKAGDNWM 953


>gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
 gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18]
          Length = 1021

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/712 (13%), Positives = 200/712 (28%), Gaps = 168/712 (23%)

Query: 8    FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------------- 51
             E ++  D+    +        +   A     +        H                  
Sbjct: 428  LEAKATFDIKSAVVDP--MQAELTGLALALGPNEACYVPLGHRQSGDAAGLFASGLEPDQ 485

Query: 52   ----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP- 106
                   + L+  LE+  V  +  N  F   VL A   + +         +++ +     
Sbjct: 486  IAARDALEALRPILESPGVLKIGFNIKF-TAVLLAQHGITLQNA--DDVQLMSYALDAGR 542

Query: 107  --SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                L A+ E           G + ++                   + A      Y   D
Sbjct: 543  HAHGLDALAE--------TWLGHKTLSY----GEVIGSGKAKLSFDQVAIDRATCYAAED 590

Query: 165  VTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
              V   +++ L+P            + E+ L  +   +  RG  +D A+   L+      
Sbjct: 591  ADVALRLWRVLKPRLVAERMTTVYETLERPLIGVLARMERRGISIDRAVLARLSGDFAQT 650

Query: 215  RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLT 270
              +++ E+  +      +    ++L   LF +  L     T+    +T  +VL    +  
Sbjct: 651  AARIEAEIREIAG-EEINIGSPKQLGDILFGKMQLPGGSKTKTGAWSTSAQVLEELAEQG 709

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
             +  +   +  + S+      + L   ++       T   L A+ TGR S      QN+P
Sbjct: 710  HEFPRKILDWRQVSKLRSTYTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIP 769

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              +    +                         +R   IA+ G KLV AD + IE R+LA
Sbjct: 770  VRTEDGRK-------------------------IRRAFIAAPGHKLVSADYSQIELRLLA 804

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
             +A      +AF+ G D++  T +  F V    +  + R   K +               
Sbjct: 805  EIADIPVLKQAFQDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINF------------- 851

Query: 451  MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                 G++                                  A +            K +
Sbjct: 852  -GIIYGIS------------------------------AFGLANQLGIPREEAGAYIKKY 880

Query: 511  RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
             ++   +    +                                  +  +    GR   Y
Sbjct: 881  FERFPGIRAYMDATRDFCR--------------------------AHGFVETLFGRKCHY 914

Query: 571  RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDI 624
             D+  + +   +      R             Q  + DI+   M+         K    +
Sbjct: 915  PDIKASNA---SVRAFNERAAINARL------QGTAADIIRRAMVRMEDALAEKKLSAQM 965

Query: 625  VLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
            +L VHDE++ E  D +      ++  +M     P+    +PL+ +   +  +
Sbjct: 966  LLQVHDELIFEVADDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDARAANNW 1017


>gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
 gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221]
          Length = 930

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/695 (15%), Positives = 196/695 (28%), Gaps = 159/695 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
             D ET +                 ++  +F    H                L+    + 
Sbjct: 365 AFDSETTALNP----------RQAELVGLSFATKAHSGWWVPASS--EALDALRPLFADN 412

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLP--SALKAVGEALKLSSQ 121
            +T + HN  F+  +L A      P+      T++            L  + E       
Sbjct: 413 SITKIGHNLKFDLAILAAQ---SCPVDGPCYDTMLAHALIEPEQRHNLDTLAEDY--LRY 467

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS- 180
                 EL+    KG                  +   +Y   D  VT ++++  +P    
Sbjct: 468 STIRFSELMPDAKKGSP--------LDYSSVDPQALADYATEDADVTLQLWECFKPKLEE 519

Query: 181 ---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  +   +   G  +         ++++ +     ++      G   
Sbjct: 520 SGQASIFYEIETPLLPVLVAMESEGIRLCTETLEETGRVLEGQIA-TLKDAVYAAAGREF 578

Query: 232 SSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +    ++L   LF E  L      T+T    T ++VLSS     P    +   R   S+ 
Sbjct: 579 NLNSPKQLGEVLFNELKLVDKPKKTKTGQFATNEQVLSSLAPKHPIVADLLEYRQ-LSKL 637

Query: 287 AVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               ++ L  A++   GR+      +  + TGR S      QN+P  S    E       
Sbjct: 638 KSTYIDALPNAVDPVSGRVHTHYGQVQ-TATGRLSSNDPNLQNIPVRSAQGRE------- 689

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                             +R   +  EG  L+ AD + IE R+LA +  ++  L AF  G
Sbjct: 690 ------------------IRKAFVPREGWTLLAADYSQIELRILAALTADEGLLTAFREG 731

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T A+ F V    V++DQR+  K++   + Y   A    +               
Sbjct: 732 RDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPYGISAFGLAQ--------------- 776

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                              T  + +   +  +   +        
Sbjct: 777 ----------------------------RLGTVSRTEAQNIIDNYFAQFPGIPGYMQAQQ 808

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           ++                                +    GR    RD+ +      T   
Sbjct: 809 ESAR--------------------------AKGYVATVCGRRRYLRDINSGN---GTIRA 839

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT 639
              R            +Q  + D++   M+    A         ++L VHDE++ +    
Sbjct: 840 AAERNAINMP------IQGTAADMIKLAMIRVHHAIIDAGLKSRMLLQVHDELIFDLAPG 893

Query: 640 DEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +E     L    M      A   P++ E      +
Sbjct: 894 EESALRQLVTGGMQDALQLA--CPIEIEIGTGMNW 926


>gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 929

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/695 (15%), Positives = 204/695 (29%), Gaps = 147/695 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   LT            ++  +F             HD           V+ 
Sbjct: 352 AFDTETDSLDTLT----------ANLVGVSFAISAGDAAYLPLGHDYLGAPEQLDREVVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE++++  +  N  F+R VL     +++    +  T++ +      + +     
Sbjct: 402 AALKPLLEDSNLLKIGQNIKFDRGVLARY-GIELQGIAY-DTMLESYVLNSVAGMG---- 455

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + E   L  +    E            ++ A      Y   D  VT  + + 
Sbjct: 456 --RHDMDSLAERH-LNHKTTTFEEIAGKGKNQLTFNQVAVEQAAMYAAEDADVTLLLHQA 512

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   K           E  L  +   +   G  +D  +    ++ +     +L++E  
Sbjct: 513 MWPQLEKAPTLEKVFLNTEMPLVMVLSRMERTGVLIDANILAEHSKEITARLDELEKEAH 572

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L    V +    ++L+T LF +  L +   T     +T + VL            +  +
Sbjct: 573 ELAG-EVFNLASPKQLQTILFEKLQLPVVKKTPNGAPSTNEEVLEELADTHALPKVILEH 631

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L + ++   +   T      + TGR S      QN+P  ++     
Sbjct: 632 R-GLAKLKSTYTDKLPQMVHPLTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNKEGRR- 689

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A EG +++ AD + IE R++A ++ +Q  L
Sbjct: 690 ------------------------IRQAFVAPEGYRIMAADYSQIELRIMAHLSQDQGLL 725

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF  G+D++  T A  F +   QVT +QR   K +   L Y   A        +  L +
Sbjct: 726 KAFAEGKDIHRATAAEVFGLPLEQVTSEQRRSAKAINFGLIYGMSA-----FGLSRQLGI 780

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    +   E +     +    ++   E    +   G          R    R   
Sbjct: 781 PRGEAQRYMDLYFERYPGVLAYMERTRKQAEEQGYVETLDGRRLYLSDIKSRNAMRR--- 837

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A    K+  + +      +                        
Sbjct: 838 --KAAEREAINAPMQGTAADIIKKAMIAVDDWIVSEEPK--------------------- 874

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                                I+Q                    +V  VH        ++
Sbjct: 875 ------------------VRMIMQ-------------VHDE---LVFEVH--------ES 892

Query: 640 DEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +   A   +  LM  +      +PLK +      +
Sbjct: 893 ELEYAEQKIRELMEKSM--VLDVPLKVDVGIGDNW 925


>gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
 gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501]
          Length = 970

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/701 (15%), Positives = 212/701 (30%), Gaps = 151/701 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHD-------PVMPQVL 57
           D ET +              +  ++     + + P         H          +   L
Sbjct: 385 DTETTALNP----------REAELVGIGCCWGNKPTDIAYIPIAHKQGKQLRKEQVFDRL 434

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           +  LE+ +   V  N+ F+R + K    +++     + T++ +          L  + E 
Sbjct: 435 QSILESNNYPKVFQNTKFDRLIFK-HQGINLD-GVVLDTMLASYVLHPEKSHKLSELCEQ 492

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                        L            +  +             EYC  D   T  + + L
Sbjct: 493 Y------------LEGITSLDYKDLGIGKKQ-TIADLDIETVAEYCGMDAYATFLLVEPL 539

Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +                EQ L  +   + D G  +D      L++ ++     L++    
Sbjct: 540 KNELKPLSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQHLLSLEENAYQ 599

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L   LF +  L+ +    T+   +T    L   K   P    +   
Sbjct: 600 AAG-EKFNLGSPKQLGHILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEY 658

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+     ++ L E ++  D R+         + TGR S      QN+P  +     
Sbjct: 659 R-TLSKLKSTYIDALPELVDKIDQRIHTNFNQSV-TATGRLSSSNPNLQNIPIRTE---- 712

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                 S  +R   I  +   LV AD + IE R+LA ++ EQ  
Sbjct: 713 ---------------------FSRRIRQAFIPQQDWLLVSADYSQIELRILAHLSQEQVL 751

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L A++  +D++  T    F     ++T  +R +GK +   + Y  G++ F + A      
Sbjct: 752 LNAYKNADDVHSVTARLLF--DKEEITPQERTLGKTINFGVIYGMGSQRFAREA-----G 804

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           ++        N   + +    ++   M++    +      +G       + +        
Sbjct: 805 VSAVEGKEFINKYRQRYAKVFDYLESMKKEAIANGYVTTILGR------RRYFN------ 852

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                          +   +        P        ++  N+ 
Sbjct: 853 -------------------------------FFDDNLYRFRGHDPQ-------NIDLNKI 874

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634
            +N    QL R            +Q  S DI+   M+   +       +++L VHDE+V 
Sbjct: 875 NINYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANLLLQVHDELVF 928

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E P  +       +   M +  +    +PL  E    K + 
Sbjct: 929 EIPHQEWEELEDKIKETMENAVT--LTVPLVVEINTGKNWM 967


>gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989]
 gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989]
          Length = 782

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 199/699 (28%), Gaps = 150/699 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +        C HD            + 
Sbjct: 200 AFDTETTSLDYM----------QAKIVGVSFAVNAGEAAYVPCGHDYMGAPEQLSLECVL 249

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LEN +   V  N  +++ VL    ++D+    +  T++ +           + +
Sbjct: 250 AALKPLLENPNKHKVGQNLKYDKHVLLNH-DIDLQGIAY-DTMLESYVCNSVATRHDMDS 307

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECL-YDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           +                L       E        +    ++    +   Y   D  VT +
Sbjct: 308 LARFY------------LDRSTIHFEDVAGKKGAKQLTFNQIDIEIAAPYAAEDADVTLQ 355

Query: 171 IFKRLEPLSSKEQELWYLD-----------QTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + + P   +E  L ++              I   G  VD  L    +  ++    +L+
Sbjct: 356 LHQAIWPTLQQEPTLQHVLESIEIPLLPVISRIERNGALVDATLLGQQSIELEQRLKELE 415

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           +E   +      +    ++L   LF +  L +   T     +T + VL       P    
Sbjct: 416 KEAFDIAG-EEFNLSSPKQLGVILFEKLELPIIKKTPKGAPSTAEEVLQELALDYPLPKV 474

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R   S+      + L + +N       T      + TGR S      QN+P  +  
Sbjct: 475 LIEHR-GLSKLKSTYTDKLPQMINPATGRIHTSYHQAVTATGRLSSSDPNLQNIPIRNAE 533

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A +G K++ AD + IE R++A ++G+
Sbjct: 534 GRR-------------------------IRQAFVAPKGYKILAADYSQIELRIMAHLSGD 568

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L+AF  G+D++  T A  F V   QVT++QR   K +   L Y   A          
Sbjct: 569 EGLLEAFNQGKDVHSATAAEVFGVELDQVTQEQRRRAKAINFGLIYGMSA-----FGLAK 623

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +   E +   +++   +++        +   G      +   R    
Sbjct: 624 QLGVGRNDAQQYIDVYFERYPGVKSYMDGVRQQAAVDGYVETLEGRRLYLPEINARNGMR 683

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +                           
Sbjct: 684 R-----QAAERTAINAPMQGTAADIIKRAMIAVDQWLC---------------------- 716

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                   T                             M                 +V E
Sbjct: 717 -------PTNPKDESAVNA----------------KMIM-QVHDE-----------LVLE 741

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++D       L  +MT+       +PL  +      +
Sbjct: 742 VKESDLDAVREKLKRVMTTTVE--LSVPLIVDVGVGDNW 778


>gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010]
 gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010]
          Length = 894

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/703 (14%), Positives = 200/703 (28%), Gaps = 158/703 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET S   L          +  ++  +F             HD           
Sbjct: 315 KLFAFDTETTSLDYL----------EARIVGVSFAVKAGEAAYLPLNHDYPGAPDQLDFD 364

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---S 107
            +   LK  LE+     V  N  ++R VL      DI +      T++ +          
Sbjct: 365 AVMADLKPLLEDPTKLKVGQNLKYDRHVLLNH---DINLQGIAHDTMLESYVLDSTATRH 421

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            + ++ +            K L       E       +    ++        Y   D  +
Sbjct: 422 DMDSLAK------------KYLDRDTIHFEDIAGKGKKQLTFNQIGLEEAAPYAAEDADI 469

Query: 168 TREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           T ++ + L P               E  L  +  T+   G  +D+ +  + +  +  +  
Sbjct: 470 TLQLHETLWPRIQAIPSLVKVYSELEMPLLPVLNTLERNGVNIDIWMLQSQSDNMAHQIA 529

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272
           +L+++          +    ++L+  L+ +  L ++  T     +T + VL        +
Sbjct: 530 ELEKQAHESAGQT-FNLGSPKQLQEILYEKQELPVKKKTPKGQPSTAEEVLQGLADDGYE 588

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             Q+       S+      + L   +N       T      + TGR S      QN+P  
Sbjct: 589 LPQIIMQYRGLSKLKSTYTDKLPLQVNKSSGRVHTSYHQAVTATGRLSSSDPNLQNIPIR 648

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           S +                            +R   +AS G  L+ AD + IE R++A +
Sbjct: 649 SENGRR-------------------------IREAFVASNGYTLLAADYSQIELRIMAHL 683

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  LKAF  GED++  T +  F++A   V+ DQR   K +   L Y   A       
Sbjct: 684 SGDESLLKAFAAGEDIHRHTASEIFDIALEDVSSDQRRSAKAINFGLIYGMSAHGL---- 739

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            +  L +          +  + +     +    +E   E    +                
Sbjct: 740 -SKQLGIERHQAADYMQTYFDRYPGVRQYMDNTREQAKEQGYVETIF------------- 785

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                                        +R  +P +              +G    Y +
Sbjct: 786 ----------------------------GRRLYLPEINSS-----------NGMRRQYAE 806

Query: 573 VGNNRSYL-NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                + +  +    + R                  D     M+          + VHDE
Sbjct: 807 RTAINAPMQGSAADIIKRAMIAIHSWL------SEAD-TGIRMI----------MQVHDE 849

Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E P      A   +   M         +PL+        +
Sbjct: 850 LVFEVPLEQLDMAKDTIEKFMMGAAE--LKVPLEVGIGVGDNW 890


>gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429]
 gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429]
          Length = 890

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 121/702 (17%), Positives = 221/702 (31%), Gaps = 160/702 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMP 54
            T  ID ET S    +            ++  +   ++         H         ++ 
Sbjct: 318 KTFSIDTETTSLDPFS----------AKLVGVSISTNEGEAYYIPISHVSENNLTKEIVL 367

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           + LKE LE     IV  N  F+  V      ++ P      T+V A           L+ 
Sbjct: 368 KFLKEILECERYNIVGQNLKFDYKVFM-VNGIE-PQIPHFDTMVAAYLINPEERRYNLEE 425

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +   LK    KM   +EL+           +          +     EY   DV +T  +
Sbjct: 426 LA--LKYLGYKMISFEELV--------DNNMPLFGNDFSFISIEKAAEYSCEDVDITFRL 475

Query: 172 FKRLEPLSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +  L     + +EL+Y        +   +   G   DV     L++  + E  KL++++ 
Sbjct: 476 YSYLSKYIGEMKELFYNIEMPLINVLAQMELNGVYFDVDYLKELSKRYEEEMKKLEEKIF 535

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            ++     +    +++   LF +  L +   T     +T   VL    K    A  +   
Sbjct: 536 EISG-EQFNINSSKQVAEILFEKLKLPIVKKTATGRNSTNAEVLEELAKDYEIARLILEY 594

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R +  +     ++++  ++N       +      + TGR S      QNLP  S   +E 
Sbjct: 595 R-KFQKLKSTYVDSIPSSVNITTNRVHSSFHQTGTSTGRLSSSAPNLQNLPTRSEEGKE- 652

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                                   +R  V    E   +V AD + IE RVLA M+ ++  
Sbjct: 653 ------------------------IRHAVKPQFENWYIVGADYSQIELRVLAHMSEDEKL 688

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AFE   D++  T ++ FNV+   VT+D R IGK++  A+                G++
Sbjct: 689 LDAFENDYDIHTITASKIFNVSELMVTEDMRRIGKMINFAII--------------YGIS 734

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               +  +                                     +++   + + +  V 
Sbjct: 735 PYGLSRRI------------------------------GLNVNETKKIIDNYFKYYQGVF 764

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E   +     ++                          N  +    GR      +     
Sbjct: 765 EFIKKTIDFAKK--------------------------NGFVKTLFGRKRFIPQLKLKN- 797

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
                 ++  R            VQ  + DI+   M+              ++L VHDE+
Sbjct: 798 --KNLIQEGERIAINTP------VQGTAADIIKIAMVKVHNELKRNSLKTKLILQVHDEL 849

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E P  +       +   M +       +PLK + YE + +
Sbjct: 850 VFEVPFDELQIVKEIIKDKMENAVK--LKVPLKVDLYEGREW 889


>gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 921

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/713 (14%), Positives = 204/713 (28%), Gaps = 175/713 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE--- 59
            + +D ET +            A    ++  +   +        C H        K    
Sbjct: 340 QVAVDTETDNLD----------ATQAQLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQM 389

Query: 60  -----------ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106
                       LE+  +  +  N  ++  VL       I +  +  T++L+        
Sbjct: 390 DLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRY---GISVQPFDDTMLLSYDLDAGRH 446

Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              +  +               + I+                  +         Y   D 
Sbjct: 447 GHGMDELSLLY--------FDHQPISFKS----VCGTGKSAITFNHVPIPAATRYAAEDA 494

Query: 166 TVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
            +T  ++  L+P              ++ L  +   +   G  VD    H L+     + 
Sbjct: 495 DITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDI 554

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
           ++L++E+  L           ++L   LF   GL     +++    T    L        
Sbjct: 555 SRLEEEIYVLAGCR-FLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLAAEGE 613

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                     + S+      + L+  +N +     T   L  ++TGR S      QN+P 
Sbjct: 614 AIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGAQTGRLSSTDPNLQNIPI 673

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +    E                         +R+  IA +G  L+ AD + IE R+ A 
Sbjct: 674 RTEIGRE-------------------------IRNAFIAKKGHLLLSADYSQIELRLAAH 708

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A E+  L+AF   ED++  T  + F      V ++ RA  K +  A+ Y          
Sbjct: 709 VADEKALLQAFREKEDIHALTAKQLFGH----VDRESRARAKTINFAILY---------- 754

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++    A  ++ +                                  + +   + 
Sbjct: 755 ----GISAWGLAARLEIDRFS------------------------------AQEMIDRYF 780

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           ++   +    +                                  +  +  P GR     
Sbjct: 781 ERFPAIRHYIDRTLDFVR--------------------------LHGYVETPFGRKTHLP 814

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGY---DI 624
            + + +           R+           +Q +S DI+   M+       KAG     +
Sbjct: 815 AIKSRKVTERQA---AERQAINAP------IQGMSADIIKRAMVRMEPALAKAGLSSVKM 865

Query: 625 VLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674
           +L VHDE++ E P+ D   A  ++  +M     P     + L+ E      + 
Sbjct: 866 LLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSVDLEVEIGTGTSWG 918


>gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802]
 gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801]
 gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802]
          Length = 972

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/700 (15%), Positives = 206/700 (29%), Gaps = 149/700 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVH-------DPVMPQVL 57
           D ET S              +  ++     + +    +      H          + Q L
Sbjct: 387 DTETTSLEP----------RNAELVGIGCCWGEKSTDIAYIPTGHNKGNQLKKEAVLQAL 436

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           K  LE+     V  N+ F+R +      +++       TL+ +          L  +   
Sbjct: 437 KPILESDRYPKVFQNTKFDRLIF-YHQGINLK-GVVFDTLLASYVLHPEMSHNLSDLCYR 494

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             LS    +  KEL               + K            YC  D   T  +  +L
Sbjct: 495 Y-LSGITSQSYKEL------------AIPKGKTIASLDIETVANYCGLDAYATFLLVSKL 541

Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +                EQ L  +   + D G  +D      L+Q ++ +   ++Q+   
Sbjct: 542 KQELKSFPSLEKLLLEVEQPLEPVLAAMEDIGIRIDTDYLQQLSQQLEQDLHIIEQQAYQ 601

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279
                + +    ++L   LF +  L+ +    T+   +T    L   +   P    + + 
Sbjct: 602 EAG-EIFNLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLEKLQGDHPIIDHILDY 660

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+     ++ L   +  D +   T      + TGR S      QN+P  +      
Sbjct: 661 R-TLSKLKSTYVDALPALVRPDTQRVHTNFNQTVTATGRLSSSNPNLQNIPIRTE----- 714

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                S  +R   I  E   LV AD + IE R+LA ++ E   L
Sbjct: 715 --------------------FSRKIRQAFIPQENWLLVSADYSQIELRILAHLSQEVVLL 754

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +A+   +D++  T    F      +T  +R +GK +   + Y  GA+ F + A      +
Sbjct: 755 EAYRNNQDVHSVTAKLLF--DKETITPQERNLGKTINFGVIYGMGAQRFAREA-----GV 807

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        N   + +    ++   M++                                
Sbjct: 808 SAAEGKTFINKYRQRYAKVFDYLERMKKEAIADGFVTTI--------------------- 846

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                 +RR    +     K                 +      
Sbjct: 847 --------------------LGRRRYFNFITESLQKLKGSDP---------EKINLEVLN 877

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635
           +N    QL R            +Q  S DI+   M+   +        ++L VHDE+V E
Sbjct: 878 INYADAQLLRAAANAP------IQGSSADIIKIAMIKMQEILSHYQARLLLQVHDELVFE 931

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            P  +       +   M +  +    +PL  E +    + 
Sbjct: 932 IPLNEWEELQTKIKETMENAVT--LTVPLVVEIHSGNNWM 969


>gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM]
 gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM]
          Length = 933

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 94/711 (13%), Positives = 183/711 (25%), Gaps = 168/711 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            + ID ET S  ++             ++  +   +          H             
Sbjct: 347 YVAIDTETTSLNEM----------QAELVGISLAVEPGQACYIPLGHREGASDDLFGSDA 396

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                     +   L+  LE+  V  +  N  ++  +      L + I     T++++ +
Sbjct: 397 LAEGQLPRDAVLSALRPVLEDAAVLKIGQNMKYDAKIFA---GLGLTIAPIDDTMLMSYA 453

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    + A+ E     +      K L+                    +       +
Sbjct: 454 LNSGIHNHGMDALSERY--LAHNPIPIKTLL----------GTGKSAVTFDKVPIDEAVK 501

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  ++   +P   ++Q           L  +   +   G  VD  +   ++ 
Sbjct: 502 YAAEDADITLRLWHMFKPQLHQKQVTTVYETLERPLVPVLARMERHGILVDRDVLSRMSN 561

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+  L      +    ++L   LF E  L      +T    T   VL  
Sbjct: 562 AFAQKMGGLEAEIHELAG-RSFNVGSPKQLGEILFDEMALEGGKKGKTGAYATGADVLED 620

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    +V + R   S+      + L + ++ +     T      + TGR +     
Sbjct: 621 LATEHELPARVLDWRQ-LSKLKSTYTDALQDHIDPNTGRVHTSYVQTGASTGRLASTDPN 679

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A  GK+LV  D + IE
Sbjct: 680 LQNIPVRSEEGRR-------------------------IREAFVADAGKRLVSLDYSQIE 714

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +AG     +AF  G D++  T +  F V   ++T D R   K +   + Y    
Sbjct: 715 LRILAHVAGIDALKQAFRDGLDIHAMTASEMFGVPLDEMTSDVRRRAKAINFGVIYGISG 774

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                      L +         +   E +     +     E    H       G     
Sbjct: 775 -----FGLARNLRIPRAEAQGFIDRYFERFPGIRAYMDETVEFAKAHGYVQTLFGRRIHT 829

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                      ++        A    I                                 
Sbjct: 830 ---------PEIAAKGPRAGFAKRAAINAPI----------------------------- 851

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                           T    + R      +           D+  + ++          
Sbjct: 852 --------------QGTAADIIRRAMIRMPEAI--------ADLPCKMLLQVH------- 882

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
               DE++ E  +       +    +M      A    +PL  +      +
Sbjct: 883 ----DELLFEAEEDAVDAVITAAREVMEGAADPAVHLDVPLTVDAGSGMNW 929


>gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B]
 gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B]
          Length = 892

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/704 (15%), Positives = 203/704 (28%), Gaps = 162/704 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMP 54
            T  ID ET S              +  ++  +    +         H         ++ 
Sbjct: 318 KTFSIDTETTSLDPF----------EAKLVGISISTMEGKAYYIPVSHFGAKNISKSLID 367

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           + LK+ L+  D  IV  N  F+  + K+       +     T++ A           L+ 
Sbjct: 368 KFLKQILQEKDYNIVGQNLKFDYEIFKS-MGFSPNV-PHFDTMIAAYLLNPDEKRFNLEE 425

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +   LK    KM    EL+                            EY   D  VT  I
Sbjct: 426 LS--LKYLGYKMISFDELVNE-NVPLFGN-------DFSYVPLERAVEYSCEDADVTYRI 475

Query: 172 FKRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           F++L          +     E  L  +   +   G   D      L++    +   + ++
Sbjct: 476 FRKLGRKIYENEMEKLFYEIEMPLIDVLSEMELNGVYFDEEYLKELSKKYQEKMDGIKEK 535

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
           +  +      +     ++   LF +  +     T     +T   VL    K    A  + 
Sbjct: 536 VFEIAG-ETFNLNSSTQVAYILFEKLNIAPYKKTATGKFSTNAEVLEELSKEHEIAKLLL 594

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R +  +     ++++  ++N       T      + TGR S      QNLP  S   +
Sbjct: 595 EYR-KYQKLKSTYIDSIPLSINRKTNRVHTTFHQTGTSTGRLSSSNPNLQNLPTRSEEGK 653

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396
           E                         +R  V    +   ++ AD + IE RVLA ++ ++
Sbjct: 654 E-------------------------IRKAVRPQRQDWWILGADYSQIELRVLAHVSKDE 688

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF+   D++  T A+ F V+   V++  R                      A   G
Sbjct: 689 NLLKAFKDDLDIHTITAAKIFGVSEMFVSEQMRR--------------VGKMVNFAIIYG 734

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    +  +                                  +  +++   + + +  
Sbjct: 735 VSPYGLSKRI------------------------------GLSVSETKKIIDNYFRYYKG 764

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E    +     +                             +    GR      + + 
Sbjct: 765 VFEYLKRMKDEARK--------------------------KGYVTTLFGRRRYIPQLRSK 798

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                   ++  R            +Q  + DI+   M+N             ++L VHD
Sbjct: 799 N---GNRVQEGERIA------VNTPIQGTAADIIKIAMINIHNRLKKENLSSKMILQVHD 849

Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E PD +      +    M +       +PLK + Y  K +
Sbjct: 850 ELVFEVPDNELEFVKDIVKDEMENAVK--LDVPLKVDVYCGKEW 891


>gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114]
 gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114]
          Length = 925

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/710 (13%), Positives = 214/710 (30%), Gaps = 169/710 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
              ID ET S             +   ++  +   +++        H             
Sbjct: 342 YFAIDTETNSLNS----------QKADLVGISLAINENEAYYVPVGHKNKQDPNLKKQIK 391

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--- 106
              + +VLK  LE+  V  V  N  ++  +        I +  +  T++L+ S       
Sbjct: 392 IKELVKVLKPYLEDETVKKVGQNIKYDLKIFLKY---GIELKSFEDTMLLSYSLDAGVNR 448

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             L  + +              L     K +                      Y   D  
Sbjct: 449 HNLDLLAKTH------------LDHDNIKFKDVVGTGKSEVTFDEVLIDNAYRYACEDAD 496

Query: 167 VTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           VT +++   +    KE+           L  +   + + G  +D  +   L+     +  
Sbjct: 497 VTLKLYNLFKDRIVKEKCFQIYETLEIPLVDVLARMENNGIKIDQVILKKLSNSFSADLK 556

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQ 272
            L++++  L+     +    ++L   L+ +  +     T+     T   VL        +
Sbjct: 557 TLEKKIYKLSG-EEFNIASTKQLGDILYEKLKISGTKKTKKGNFATNVNVLEDLASKGNE 615

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++     + S+      ++L E ++ + +   T   L A+ TGR +      QN+P  
Sbjct: 616 FPKLVLEWRQKSKLKNTYTDSLPEYIDKNTKRIHTSFLLAATSTGRLASADPNLQNIPIK 675

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           S+  +                          +RS  ++ +G  ++ AD + IE RVLA +
Sbjct: 676 SKEGK-------------------------LIRSAFVSEKGSSIISADYSQIEMRVLAHV 710

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A  +   KAF+  ED++  T ++ F     ++ +D R   K +                 
Sbjct: 711 ADVKELKKAFKNNEDIHNITASQIFECDIKKINEDMRRKAKAINF--------------G 756

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++    A  +                                     E+   ++ +
Sbjct: 757 IIYGISSYGLAKQIS------------------------------VSNPEAEQFLFSYFK 786

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           K   + +   E  +   +                          N  +     R   + +
Sbjct: 787 KFPEIRDYMQETLEFCRK--------------------------NGFVQTMFNRKCHFPN 820

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL 626
           + +     +T      R            +Q  + DI+   M+N        K    +++
Sbjct: 821 INDKN---HTLKSFQERAAINAP------IQGAAADIIRFAMINIDKKILSKKIKSRLLV 871

Query: 627 TVHDEIVCETPD-TDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
            +HDE++ ET D   +     + + M +     +   +PL  +   +K +
Sbjct: 872 QIHDELLLETKDMDLKKEIQKIKNEMENAIDGDYNFSVPLIVDANSAKNW 921


>gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132]
 gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132]
          Length = 933

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/705 (14%), Positives = 202/705 (28%), Gaps = 171/705 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLK 58
            +  D ET              A D  ++  +F +                   +    K
Sbjct: 362 EICFDTETT----------DIDALDAQIVGLSFAYRPREAFYIPFSPKFEEAKAVLIEFK 411

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN ++  VA N  ++ T+L     +++       T++            +  + E  
Sbjct: 412 PLFENENIRKVAQNIKYDLTILATY-GVEVK-GEIYDTMLAHYILEPDQRHGMDYLAETY 469

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              S K     +LI              +             EY   D  +T ++   L+
Sbjct: 470 --LSYKPIPISDLI----------GKGKKQLNMRDVPLEQIKEYAAEDADITLQLKHVLD 517

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L ++   +   G  +DV   H L+  +  +  K  +++  L 
Sbjct: 518 AQIKKTDQGRLLQEVELPLVHVLSDMERTGVKIDVEALHDLSNTLQKDLAKTQEDIFQLA 577

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L   LF    +      T T    T + +L + +       ++ + R 
Sbjct: 578 GM-EFNVGSPKQLGEILFEHMKIDEKPKKTPTGQYATGEDILVNYEADHEIVRKILDFR- 635

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             S+     ++ L   ++   GR+  T     A+ TGR S      QN+P  +    E  
Sbjct: 636 ELSKLKSTYVDALPTLISKRTGRIHTTYNQAVAA-TGRLSSTNPNLQNIPIRTERGRE-- 692

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  +R   I   E   ++ AD + IE R++A  +G++  L
Sbjct: 693 -----------------------IRKAFIPGGEEFTILSADYSQIELRIMADFSGDESML 729

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G D++  T ++ F V+  +V  D R                          G++ 
Sbjct: 730 EAFDNGMDIHAATASKVFGVSLEEVNSDMRRKA--------------KMVNFGIIYGIS- 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A          + +  A+  +  +V  
Sbjct: 775 -----------------------------AFGLAQRLGIPRGEAKNIIDAYFTQFPKVKS 805

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             ++  +   +                             +    GR    RD+ +    
Sbjct: 806 YMDQTIEKARELE--------------------------YVETILGRRRYLRDINSRNQ- 838

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIV 633
             T      R            +Q  + D++   M+              ++L VHDE+V
Sbjct: 839 --TNRGFAERNAINAP------IQGSAADMIKVAMIQIHDFMKKENLKSKMILQVHDELV 890

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA----EGYESKRY 673
            +   ++       + + M +       LPLK          K +
Sbjct: 891 FDAHHSEVEFLKEKIDYYMVNA------LPLKVKIETGIGIGKNW 929


>gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
 gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310]
          Length = 920

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 94/694 (13%), Positives = 196/694 (28%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET S   +          +  ++  +F  +                  + ++ 
Sbjct: 348 KILSLDTETTSTNPM----------EAELVGLSFAVEPKKAFYVPVPAKHEDAVNLVKIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   EN ++  V  N  ++  VL+    +++       T++            +  + E 
Sbjct: 398 KPLYENEEIVKVGQNIKYDMEVLRNY-GIELK-GPMFDTMIAHYVLQPELRHNMDYMAEV 455

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               + +    ++LI    K         R+             Y   D  +T ++   L
Sbjct: 456 Y--LNYQTIHIEKLIGERGK----NQKNMRDLSPTDVYL-----YACEDADITLQLKNAL 504

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L  +   +   G  +D       ++        L+ ++  L
Sbjct: 505 EPKLKEAGVADLFYQMEMPLVNVLAEMEMNGVRIDTEALKETSENFTKRMLDLEHQIHEL 564

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T +  L            + + R
Sbjct: 565 AG-ESFNVSSPKQVGDILFGKLQIAEKPKKTKTGQFVTSEEELQKYAAGNEIVTLILDYR 623

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L + +N       T      + TGR S      QN+P      +E  
Sbjct: 624 -GLKKLLGTYVDALPKLINPRTGHIHTSFNQTVTATGRLSSSDPNLQNIPVRGEDGKE-- 680

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R C I  +G     AD + IE RV+A ++G++  ++
Sbjct: 681 -----------------------IRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHMIE 717

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ G D++  T A+ +      VT+D+R   K     + Y               L ++
Sbjct: 718 AFQHGYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIYGITV-----FGLAERLGID 772

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +     +    ++    +    E    + F                      
Sbjct: 773 RNEAKQLIDGYFTTFPQVYDYMEQAKATAREQGYVETFF--------------------- 811

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                +RR +P +  +           +        +       
Sbjct: 812 --------------------HRRRYLPDINSRNATVRGFAERNA--------INAPIQGS 843

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                ++     Y     EN +Q                    ++L VHDE+       +
Sbjct: 844 AADIIKVAMIRIYKRFKREN-IQ------------------SKMILQVHDELNFSVLPEE 884

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M +   +   +PL A+G   K +
Sbjct: 885 KEQVERIVMEEMQNA--YPLRVPLIADGGWGKNW 916


>gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126]
          Length = 930

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/703 (14%), Positives = 202/703 (28%), Gaps = 162/703 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           +  D ET S   +          D  ++  +F  ++         HD            +
Sbjct: 353 IAFDTETTSLNYM----------DAELVGVSFCIEEGEAAYVPVAHDYPDAPAQLSREFV 402

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
              LK  LE+  V  V  +  +++ VL    ++ +       T++ +           + 
Sbjct: 403 LDALKPILESDTVIKVGQHIKYDKNVLANY-DITLNGIG-FDTMLESYVLNSTAQRHDMD 460

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           ++  A          G + I      E       +    ++ +    G Y   D  +T  
Sbjct: 461 SLALAY--------LGHKTIHF----EEIAGKGAKQLTFNQISLEEAGPYAAEDADITLR 508

Query: 171 I----FKRLEPLSSKEQ-------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +    + +L+ +   +         L  +   +   G  +D       +Q +     +L+
Sbjct: 509 LHNAIWTKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQRLRQQSQDLATRIAELE 568

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
            E+         +    ++L+  LF +  L +   T     +T + VL       P   +
Sbjct: 569 SEVHEEAG-EPFNLGSTKQLQHVLFEKMSLPIIKKTPKGAPSTSEDVLQELALEYPLPKK 627

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++      + L + +N       T      + TGR S      QN+P  +  
Sbjct: 628 IMEYR-GLTKLKNTYTDKLPKMINHRTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEE 686

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       VR   +  EG K V AD + IE R++A ++G+
Sbjct: 687 GRR-------------------------VRQAFVPREGNKFVAADYSQIELRIMAHLSGD 721

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F V   +VT +QR   K +   L Y   A        + 
Sbjct: 722 KGLLDAFAHGKDIHKATAAEVFGVPLDEVTTEQRRSAKAINFGLIYGMSA-----FGLSK 776

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+         +   E +     +    +E+  E    +   G          R    
Sbjct: 777 QLNIPRNEAQKYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGR---------RLYLP 827

Query: 516 RVS----ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            +            +A       G A    K   + +    +   +  + +         
Sbjct: 828 DIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKVDDWIRKNASDDVTM--------- 878

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                                                     MM               E
Sbjct: 879 ------------------------------------------MMQVHD-----------E 885

Query: 632 IVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  +       S +  LM S  +    +PL  E    + +
Sbjct: 886 LVFEIREDKVETYVSTITALMESAAT--LNVPLVVEAGVGENW 926


>gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 542

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 98/651 (15%), Positives = 183/651 (28%), Gaps = 147/651 (22%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLP 106
              V+   LK  LEN     +  +  ++R V      +++  +    T++ +       P
Sbjct: 13  DRDVVLAKLKPWLENPQALKLVQHIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEADKP 70

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             L ++ E              L       E             +       EY   D  
Sbjct: 71  HGLASLAERH------------LGRSGISFEDLCGKGANQISFDQVDIAKAAEYACEDSD 118

Query: 167 VTREIFKRLEPLSSKEQE----------LWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            T ++   L P      +                 I   G  +D       +  +     
Sbjct: 119 QTLDVHLVLWPQIEANDKLKFIYELEIASSEALYRIERNGVLIDAPTLAAQSHELGQRIL 178

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272
           +L+ E   +      +    ++L    F + G+ +   T     +T + VL    +  P 
Sbjct: 179 QLETEAYEIAGQP-FNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPL 237

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             ++  +R   ++      + L +      GR+        A  TGR S      QN+P 
Sbjct: 238 PAKLLEHR-SLAKLKGTYTDKLAQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIPI 295

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +                              VR   +A+ G  +  AD + IE R++A 
Sbjct: 296 RTAEGRR-------------------------VREAFVAAPGCVIASADYSQIELRIMAH 330

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ +   L+AF  G D++  T A  F V   QV+ +QR   KV+                
Sbjct: 331 ISDDPALLRAFHDGLDVHRATAAEVFGVPVDQVSSEQRRYAKVIN--------------F 376

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++                                  A       TA +   + + 
Sbjct: 377 GLIYGMS------------------------------AFGLARNLGIDNTAAKNYIQRYF 406

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           +++  V        +  ++                             +    GR L   
Sbjct: 407 ERYPGVKAYMESTRELAKR--------------------------QGYVETVFGRRLQLA 440

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIV 625
            + N +         L R            +Q  + D++   M+              ++
Sbjct: 441 GIKNAKGAQ---LAGLERAAINAP------MQGTAADLIKLSMVKVQQVLDAQNKSTKMI 491

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + VHDE+V E P  +       +  LM         +PL AE      + K
Sbjct: 492 MQVHDELVFEVPQDEVDWVRTEIPSLMAGVAE--LKVPLLAEVGVGPNWDK 540


>gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
 gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826]
          Length = 881

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/696 (14%), Positives = 198/696 (28%), Gaps = 129/696 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVL 57
            ID ET S   +             ++  +              H              L
Sbjct: 284 AIDTETDSLDYMR----------ANLVGISVAPAPGEAYYLPLAHQLSANLPYAETLTRL 333

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           K  LE +       +  ++R +      +++   +   T++++ +         L  + +
Sbjct: 334 KPLLEASAPPKSGQHHKYDRHIFARA-GIELRGIK-DDTMLMSYTIDSTATRHNLDDLAD 391

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                         L  +    E       +     +        Y   D  +T  +   
Sbjct: 392 YY------------LNHQTTTFEDIAGKGAKQLTFDQIPLETATAYACEDADITLRLKNH 439

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  L   I   G  +D A     +  +  +   L+    
Sbjct: 440 LAPKLAAVPQLDALYRELEMPLAELLYKIEATGVRIDPAALAAQSAEISGQLAALEHAAH 499

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTP-QAIQVFN 278
           +L      +    ++L+  L+ + GL           +T + VL+   +    +  ++  
Sbjct: 500 TLAGSP-FNLGSPKQLQEILYDQLGLPVLRKTPKGQPSTNEEVLAELAESHGAELPRLIL 558

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                ++      + L E +N       T      + TGR S      QN+P  S +   
Sbjct: 559 EHRGLAKLKTTYTDRLPELINPHTGRIHTSYHQAVTSTGRLSSSDPNLQNIPVRSEAGRR 618

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA +G +++ AD + IE R++A ++ +   
Sbjct: 619 -------------------------IRRAFIAEDGWQILAADYSQIELRIMAHLSADPGL 653

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  G+D++  T A  F VAP  V+++QR   K +   L Y   A           LN
Sbjct: 654 LAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIYGMSA-----FGLARQLN 708

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +         ++    +    ++    +E   +    +  +G            K+    
Sbjct: 709 IPRGQAADYIDTYFARYPKVRDYMDATREAAHKQGYVETLLGR--RLYLPDINSKNP--- 763

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +      +        G A    KR  + +                 R L    +     
Sbjct: 764 QRRQASERLAINAPMQGSAADIIKRAMLAID----------------RELELSPLPGAGG 807

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET-P 637
             NT                     A +            +    +++ VHDE+V E  P
Sbjct: 808 THNTNPLPRE---------------ATAA---------KNRDDLRLIMQVHDELVFEIRP 843

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                    +  LM +  +    +PL  E      +
Sbjct: 844 QAAAELTPRIVALMENAMT--LSVPLIVETGLGANW 877


>gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
 gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823]
          Length = 951

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/702 (14%), Positives = 208/702 (29%), Gaps = 162/702 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
            ++  D ET     L             ++  +F + +          D      +    
Sbjct: 378 KSVCFDTETTDINAL----------HADLVGMSFSYKEREAYYVAVPKDKKEIQAIVDEF 427

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   E+  +  +AHN  ++  VL     +         T++            +  + E 
Sbjct: 428 KPFFEHKSIEKIAHNMKYDIQVLHRY-GVQFA-GPLFDTMIAHYLIQPESKQGMDFLAEY 485

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               +      + LI +                          +Y   D  +T ++ +  
Sbjct: 486 Y--LNYTPVSIETLIGK---------KGKGQGNMGDLQPEAISDYACEDADITFQLKQLF 534

Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P              E  L  +   + + G  +D+      ++ +  E   L++ ++ L
Sbjct: 535 APQIEKDHLKSLFYDMEMPLVSVLAEMEEEGVAIDIPHLEAYSKQLAEETEGLEKRIKEL 594

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    ++L   LF    +  +   T+T    T + +L  +K        + + R
Sbjct: 595 AGMD-FNVDSPKQLGDVLFEHMKISSKAKKTKTGQYATSEDILQQHKNDHEIIPCILDYR 653

Query: 281 MRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L    +  DGR+  +      + TGR S      QN+P  S   +E 
Sbjct: 654 Q-MKKLKSTYVDPLPTMKDPVDGRVHTSYMQ-TVTATGRLSSNNPNLQNIPIRSERGKE- 710

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                                   +R   IA  +  +L+ AD + IE R++A +A +   
Sbjct: 711 ------------------------IRRAFIARSKDFQLMSADYSQIELRIIAALADDTNM 746

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF+   D++  T A+ F+V    VTKDQR               A          G +
Sbjct: 747 IQAFKDKVDIHRATAAKVFHVELDDVTKDQR--------------SAAKAVNFGIIYGQS 792

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             +       T  +++  ++  ++S + 
Sbjct: 793 ------------------------------AFGLSQNLGISRTEAKQIIDSYFAQYSTIK 822

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                   A +   ENG      +                       R     D+ +  +
Sbjct: 823 TYM---DNAVKDARENGYVETIMQ-----------------------RRRYLPDINSANA 856

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEI 632
            +     +               +Q  + DI+   M+   KA         ++L VHDE+
Sbjct: 857 VVRGFAERN---------AVNAPIQGSAADIVKLAMVAVDKAMKKAKVKSKMILQVHDEL 907

Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           V +  + ++     L    M +       +P++ E   +  +
Sbjct: 908 VFDVHNDEQEVMKKLVKEAMENAIQLV--VPMEVEMELANNW 947


>gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
 gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B]
          Length = 681

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 224/684 (32%), Positives = 333/684 (48%), Gaps = 51/684 (7%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS-YFERTVLKACFNL---DIPI 90
           +  DD PV  WD      MP  L EA+ +        N   F+R VLK         +P 
Sbjct: 5   WAIDDGPVGTWDVTTGAPMPVELDEAI-DAADEYWWQNGGMFDRVVLKHAAPEIYARMPE 63

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NK 147
           H+W  T+V A ++GLP  L  + E   + +   K +EG +LI  FCK         R  +
Sbjct: 64  HKWRDTMVQAYAHGLPGKLALLCEIFNIPTDQAKDKEGAQLIQLFCKPRPANSGLRRATR 123

Query: 148 PNHREAWRLFGEYCKGDVTVTREIF----KRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
             H E W  F  Y   D+T  R +     +   P +  E  LW+ DQ IN RG  +DV L
Sbjct: 124 ETHPEQWAKFLTYAGADITAERAVHKAMPRWNYPNNVTELALWHQDQRINMRGMQMDVEL 183

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
           A    + +D  + +L      LT G V+ +   +KL   L  E  + L D+ ++T +R +
Sbjct: 184 AEAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVDLPDMKKSTLERRI 243

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
           +    L     ++   R+ A+ ++  K  TL+  +++DGRLRG +QF GA RTGR +  +
Sbjct: 244 ND-PDLPDALRELLAIRLEATMTSSSKYKTLLRGVSADGRLRGLMQFCGAQRTGRVAHRL 302

Query: 324 FPPQNLPRPS------------------RSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
           F P N+PRP                     + EL         +     + + + ++ VR
Sbjct: 303 FQPGNMPRPDVGLMVGELGVAKFSDGDAERYTELGIGALKTGCADLVFENVIGLTANVVR 362

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-----DLYVTTYARSFNVA 420
             ++A +GK+L V+DL+ IE R  AW+AGE+WKL+AF   +     DLY   YAR+F VA
Sbjct: 363 GTIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAFGVA 422

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT---NSAPEEWED 477
              V K  R +GKVMELAL Y+GG  AF     T  ++L++    V        PE   +
Sbjct: 423 VEAVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAVFAALDTVDPEIVRE 482

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
           A     W  +      +       AC+ +K+ WR+ H + S  W EL  A    I +   
Sbjct: 483 ARGMWEWAVKKRRTLGLPQDVFI-ACDILKRLWRRAHPQTSSYWPELRDAAILAISSPGK 541

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY----RDVGNNRSYL--NTTTRQLTREY 591
            +  +R     V +++D   L + LPS R L Y           SY+  N  TR+  R  
Sbjct: 542 TVHARR-----VILRRDGEWLRVQLPSKRQLCYLAPRVSDDGEISYMGVNQYTRKWQRTK 596

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
           TYGGK+ EN+ QAV+RD+L         AGYDIVL++HDE++ E PD D+++A  L  L+
Sbjct: 597 TYGGKIFENLCQAVARDVLFYNAPAVEAAGYDIVLSIHDELITEAPDADDYSADELSSLI 656

Query: 652 TSNPSWAKGLPLKAEGYESKRYRK 675
            + P+WA+G+PL A G+ + RY+K
Sbjct: 657 ATAPAWAEGMPLAAAGFSAYRYKK 680


>gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328]
 gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328]
          Length = 945

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 109/707 (15%), Positives = 202/707 (28%), Gaps = 166/707 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PV 52
             +  D ET S              D  ++     +      +      H          
Sbjct: 368 KPVAWDTETTSLEP----------RDANLVGIGCCWGSELSDLAYIPLNHTQGEMLNIEE 417

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALK 110
           +   L+  LE+ +      N+ F+R +L     + +       T++ +          L 
Sbjct: 418 VLPALRPILESENYPKTLQNAKFDRLIL-RSQGITLK-GVVFDTMLASYVINPESSHNLT 475

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +                L       +++  L  + K            YC  DV  T +
Sbjct: 476 DLSLRY------------LPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQ 523

Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           I ++++ +              EQ L  +   +  +G  +D    + L++ +      L+
Sbjct: 524 ITQKMQDILKDVPPLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSKQLGETLESLE 583

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAI 274
           +       G V +    ++L   LF    L  +    T+   +T   VL   K   P   
Sbjct: 584 K-ASHQAAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVIN 642

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +   R   S+     ++ L E + SD GR+         + TGR S      QN+P  +
Sbjct: 643 YILEYR-TLSKLKSTYVDALPELVRSDTGRIHTDFNQAI-TSTGRLSSSHPNLQNIPIRT 700

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                      S  +R   I   G  LV AD + IE R+LA ++
Sbjct: 701 E-------------------------FSRQIRKAFIPESGWLLVSADYSQIELRILAHLS 735

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            E+  ++A+ T +D++  T    F+                                   
Sbjct: 736 QEKMLIEAYNTNQDVHSLTAQLLFDKD--------------------------------- 762

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                        +  +         NF           A E     TA ++    +  +
Sbjct: 763 -------------EITADERRLGKIINFGVIYGMGSQRFAREVGVSATAGKQFIDRFNSQ 809

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V E       A                                +    GR   +  +
Sbjct: 810 YPGVFEYLESQKLAAIN--------------------------QGYVETILGRRRYFESL 843

Query: 574 GN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTV 628
              +R  LN    Q+ R            +Q  S DI+   M+   +        ++L V
Sbjct: 844 KGRDRDRLNYQDEQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARLLLQV 897

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           HDE+V E P ++       +   M +       +PL  + +    + 
Sbjct: 898 HDELVFEVPLSEWEELQHQIKSTMENC--LFLSVPLVVDIHAGTNWM 942


>gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42]
 gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CFN 42]
          Length = 999

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/717 (14%), Positives = 199/717 (27%), Gaps = 169/717 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHD---- 50
           +  D ET S            A    ++ FA    D+                 H     
Sbjct: 401 IAFDTETTSLD----------AMQAELVGFAMAIADNVADPTGTKIRAAYVPLAHKDGVG 450

Query: 51  --------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                               LK  LE+  V  VA N  ++  ++K      +    +  T
Sbjct: 451 DLLGGGLAENQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLMKRY---GVETKSFDDT 507

Query: 97  LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           ++++           +  + E           G   I      +        N       
Sbjct: 508 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGKANITFDLVD 555

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203
                 Y   D  VT  ++  L+P              E+ L  +   +  RG  VD  +
Sbjct: 556 IDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 615

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259
              L+  +     +L+ E+ +L      +    ++L   LF + GL     T+    +T 
Sbjct: 616 LSRLSGELAQGAARLEDEIYTLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTS 674

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL        +  +   +  + ++      + L   ++ + R   T   L ++ TGR 
Sbjct: 675 ASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETRRVHTSYSLASTTTGRL 734

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  +    +                         +R+  I++ G KL+ A
Sbjct: 735 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 769

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +   +
Sbjct: 770 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 829

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y   A           L++             E +    ++    +    +    +   
Sbjct: 830 IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 884

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
           G          R  +  V        +A       G A    +R  + +     +     
Sbjct: 885 GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKMEPALAEAGL-- 937

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                                        R                        ++    
Sbjct: 938 ---------------------------AERVRM---------------------LLQVH- 948

Query: 620 AGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
                     DE++ E   +  E    ++  +M +   P+    +PLK +   +  +
Sbjct: 949 ----------DELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLKVDARAATNW 995


>gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803]
 gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I
 gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803]
          Length = 986

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 114/701 (16%), Positives = 213/701 (30%), Gaps = 151/701 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVH--DPV-----MPQVL 57
           D ET S   L             ++     +   P  V      H          +  +L
Sbjct: 401 DTETDSLDPLV----------ANLVGIGCAWGQEPNQVAYIPLKHHQGEQLSLGIIKDLL 450

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
            E L N     V  N+ F+R VL     +++     + T++ +          L  +   
Sbjct: 451 GEILGNAIYPKVLQNAKFDRRVLAHH-GIEL-GGVVLDTMLASYVLQPEETHNLTDLCRR 508

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             L    +   K+L               +++          G+YC  D   T  +  +L
Sbjct: 509 YNLGLVAL-SYKDL------------GLKKDQTIADLPLETAGQYCGLDCYATYLLASKL 555

Query: 176 EPLSSKEQELWYLDQT-----------INDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +    +  EL  + +            + DRG  +D     TL+Q +      ++     
Sbjct: 556 QKELDQYPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLLTIETAAYE 615

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L T LF + GL  +    T+   +T    L   +   P    +  +
Sbjct: 616 AAG-ESFNLSSPKQLGTILFDKLGLDRKKSRKTKTGYSTDHATLEKLQGDHPIIDAILEH 674

Query: 280 RMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   ++     ++ L E +N    R+         + TGR S      QN+P  S     
Sbjct: 675 R-TLAKLKSTYVDALPELVNGQTQRIHTDFNQAV-TSTGRLSSSNPNLQNIPIRS----- 727

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                 S  +R   +  +   LV AD + IE R+LA ++ E   
Sbjct: 728 --------------------DFSRQIRRAFLPQKDWLLVSADYSQIELRILAHLSQEPVL 767

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+A+   +D++  T    F      +T  +R +GK +   + Y  GA   Q+ A  TG++
Sbjct: 768 LQAYGDRQDVHGVTAKLLFGK--EDITPAERNLGKTINFGVIYGMGA---QRFARETGIS 822

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                     +     +    ++   M+            +                   
Sbjct: 823 A--VEGREFIDRYHRTYAQVFDYLETMKLEAIAKGYVTTIV------------------- 861

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                  +RR    V     +     +          ++     
Sbjct: 862 ----------------------GRRRYFNFVTEALRQLRGKTVT---------ELDLVDV 890

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634
            +N    QL R            +Q  S DI+   M+   K        ++L VHDE++ 
Sbjct: 891 KMNYNDAQLLRSAANAP------IQGSSADIIKIAMVKLAKLLESYQTRMLLQVHDELIF 944

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E P  +    + ++ + M    +    +PL  E +    + 
Sbjct: 945 EMPPEEWEELAPLIQNTMEQALT--LSVPLVVEMHRGSNWM 983


>gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
 gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099]
          Length = 1003

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/682 (15%), Positives = 200/682 (29%), Gaps = 145/682 (21%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDP------------------VMPQVLKEALENTDVTI 68
              +I  A              H                        VLK  LE+  V  
Sbjct: 428 QAELIGMAIATAPGRAGYIPFAHKSGNGDLLGGGALENQIPLREALAVLKPLLEDRSVLK 487

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           +A N  ++  ++       I +  +  T++++            G        ++ E K 
Sbjct: 488 IAQNLKYDLVIMSRY---GIDVAPFDDTMLISYVLDA-------GTPHGHGMDQLAE-KW 536

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------- 179
           L     + +        +    +        +   D  VT  ++  L+P           
Sbjct: 537 LGHTPLQLKDVTGSGKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGLVSVY 596

Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E+ L  +   +  RG  VD  +   L+  +     +L++E+  L    + +    ++
Sbjct: 597 ERLERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLIGERI-NIGSPKQ 655

Query: 239 LKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           L   LF   GL     T+    +T  ++L        +  +   +  + ++      + L
Sbjct: 656 LGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDAL 715

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
              ++ D R   T   L A+ TGR S      QN+P  +    +                
Sbjct: 716 PGFIHPDTRRVHTSYALAATTTGRLSSSDPNLQNIPVRTAEGRK---------------- 759

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R+  IA +G +LV AD + IE RVLA +A      +AF  G D++  T +
Sbjct: 760 ---------IRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITAS 810

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             FNV    +  + R   K +   + Y   A           L++             E 
Sbjct: 811 EMFNVPVEGMPSEVRRRAKAINFGIIYGISA-----FGLANQLSIPREEASNYIKKYFER 865

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           +    ++    +    EH   +   G          R  +  +        +A       
Sbjct: 866 FPGIRDYIEETKAYAREHGFVETIFGRRIHYP--DIRSSNPSIRAFN---ERASINARLQ 920

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G A    +R                                    +      L R     
Sbjct: 921 GTAADIIRR-----------------------------------AMVRMEEALDRAKL-- 943

Query: 595 GKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653
                      +R      M+          L VHDE++ ET + +      +   +M +
Sbjct: 944 ----------SAR------ML----------LQVHDELIFETVEAEVEATIPVVRHVMEN 977

Query: 654 N--PSWAKGLPLKAEGYESKRY 673
              P+ +  +PL  +   +  +
Sbjct: 978 AAMPAVSMSVPLHVDARAANNW 999


>gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330]
          Length = 925

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/702 (14%), Positives = 199/702 (28%), Gaps = 162/702 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQ 55
           + +D ET S   +             ++  +              H           +  
Sbjct: 350 IGLDTETTSREPM----------QAQLVGISVALAAGEAFYIPVAHRFADAQLDWATVKS 399

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113
            L+  LE+  +  +  N  +++ + K   ++D+        ++ +          L  + 
Sbjct: 400 SLQPFLESESLGKIGQNLKYDQHIFKNQ-DIDLKGI-VGDAMLASYIVESHLTHNLDDLA 457

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                       G E I+     E+      +         +   +Y   D      I +
Sbjct: 458 ARW--------LGLETISY----ESLCGKGAKEISFADVDVQAATQYACQDADFALRIEQ 505

Query: 174 RLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            L               E  +  +   +   G  +D A     +  +  E  +L+Q+   
Sbjct: 506 HLRTQMDAAQLALYQQMELPVAQVLFEMERAGVQIDRAELAQQSATLGAELLQLEQQAYE 565

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE----TTCQRVLSSNKKLTPQAIQVFN 278
           L      +    ++L+  LF + G+  +    T     +T + VL       P    +  
Sbjct: 566 LAGQP-FNLNSPKQLQEILFDKLGIPTKGVKKTAKGGLSTDESVLEKLADDYPLPKIILQ 624

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   S+      + L E +        T      + TGR +      QN+P  +     
Sbjct: 625 TR-SLSKLKSTYTDKLAEMILPQTGRVHTNYAQAVAITGRLASNNPNLQNIPIRTEQGRR 683

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    VR    A +   +V AD + IE R++A ++G+   
Sbjct: 684 -------------------------VRRAFTAPQNCVIVSADYSQIELRIMAHLSGDTTL 718

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
             AF   ED++  T A  F +AP  +T +QR   K +                    G++
Sbjct: 719 QAAFHNNEDVHRRTAAEVFGMAPEHITSEQRRYAKTIN--------------FGLIYGMS 764

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A  +  ++                                 +   + +  +++ V+
Sbjct: 765 EYGLAKSLGIDAMS------------------------------AKMFIQRYFARYTGVA 794

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +      +  +Q                             +    GR L   D+    +
Sbjct: 795 DYMQRTKEQAQQ--------------------------LGYVETLFGRRLYLPDIHAKNA 828

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEI 632
               T     R            +Q  + D++   M++             +V+ VHDE+
Sbjct: 829 M---TRAGAERAAINAP------MQGTASDLIKRAMISVQDFLRQSSLHSRLVMQVHDEL 879

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E  D++       L  LM         +PL AE      +
Sbjct: 880 VLEVHDSELALIREKLPELMAQVGVGVLNVPLLAEVGVGANW 921


>gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168]
 gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168]
          Length = 926

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 113/704 (16%), Positives = 211/704 (29%), Gaps = 169/704 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-------- 56
             D ET S   +             ++ F+                  +           
Sbjct: 355 AFDCETDSLDRI----------HTRIVGFSLSRRAGTGIYVPLSVPDALLTQTLIEKQDA 404

Query: 57  ---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
              L+        T+  HN  F+  VL     L  P  R   T+V A          +L+
Sbjct: 405 FVQLERLFSVPACTLAMHNGKFDYEVL-RSNGLAEPRCRIADTMVAAWLLDPDRSAYSLE 463

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           A+           + G E I                             Y   D  +T +
Sbjct: 464 ALAA--------DKLGLETIPYTDVVPKGS-------TFADIPLEQAVPYAAEDADLTWQ 508

Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +++   P            + E  +  +   +   G  ++ +   +  + +  E  ++ +
Sbjct: 509 LYRLFLPRLAAAKLGDLFWNLEMPVLPILAEMELDGIHIEKSELISYGEELTAEIERIRR 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           E+  L      +    ++L+  LF E  L     T+   +T   VL +   L P   ++ 
Sbjct: 569 EIYELVGH-EFNVASTKQLQDVLFEERKLPPGKKTKTGYSTDTGVLETLAALDPVPRKIL 627

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           + R++ ++     ++TL   ++ + R+  +    G + TGR S      QN+P       
Sbjct: 628 DYRLK-TKLFSSYVDTLPLMVDGNDRIHTSFIQTG-TATGRLSSREPNLQNIPVRDEDGR 685

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R    A  G +L+ AD + IE  +LA ++G+  
Sbjct: 686 R-------------------------IRLAFTAEPGCQLISADYSQIELVILAHLSGDPN 720

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
              AF  G D++  T A  F V P  VT D R   K +                    G+
Sbjct: 721 LCAAFSGGTDVHRATAALIFGVQPDAVTPDMRRTAKTINF--------------GVMYGM 766

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A                                     T      +A+ + ++ V
Sbjct: 767 SAFRLAGA------------------------------LGIPRTQAAEFIEAYFKTYAGV 796

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
               NE+  A +Q                          +  +    GR    R + ++ 
Sbjct: 797 RNFMNEMVNAAQQ--------------------------SGFVETIFGRRRYIRAINSSS 830

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
               +      R            +Q  + DI+ + M++   A         ++L VHDE
Sbjct: 831 KIEKS---GAERVA------VNTPIQGSAADIVKKAMIDVAAALKKTGSPARLLLQVHDE 881

Query: 632 IVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++ E P ++    AS++   M +  S    +PLK       R+ 
Sbjct: 882 LILECPQESAAETASLIKQTMENVVS--LRVPLKVSVEIGPRWG 923


>gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca]
          Length = 750

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 110/707 (15%), Positives = 202/707 (28%), Gaps = 166/707 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PV 52
             +  D ET S              D  ++     +      +      H          
Sbjct: 173 KPVAWDTETTSLEP----------RDANLVGIGCCWGSELSDLAYIPLNHTQGEMLNIEQ 222

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALK 110
           + + L+  LE+ +      N+ F+R +L     + +       T++ +          L 
Sbjct: 223 VLEALRPILESEEYPKTLQNAKFDRLIL-RSQGITLK-GVVFDTMLASYIINPESSHNLT 280

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +                L       +++  L  + K            YC  DV  T +
Sbjct: 281 DLSLRY------------LPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQ 328

Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           I ++++ +              EQ L  +   +  +G  +D    + L+Q +      L+
Sbjct: 329 ITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGETLDNLE 388

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAI 274
           +         V +    ++L   LF    L  +    T+   +T   VL   K   P   
Sbjct: 389 KTSHQAAG-EVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVIN 447

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +   R   S+     ++ L E + SD GR+         + TGR S      QN+P  +
Sbjct: 448 SILEYR-TLSKLKSTYVDALPELVRSDTGRIHTDFNQAI-TSTGRLSSSHPNLQNIPIRT 505

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                      S  +R   I   G  LV AD + IE R+LA ++
Sbjct: 506 E-------------------------FSRQIRKAFIPESGWLLVSADYSQIELRILAHLS 540

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            E+  ++A+ T +D++  T    F+                                   
Sbjct: 541 QEKVLIEAYNTNQDVHSLTAKLLFDRD--------------------------------- 567

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+                      NF           A E     TA ++    +  +
Sbjct: 568 --GITPEE-----------RRLGKIINFGVIYGMGAQRFAREVGVSATAGKQFIDRFNSQ 614

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V E       A                                +    GR   +  +
Sbjct: 615 YPGVFEYLESQKLAAIN--------------------------QGYVETILGRRRYFESL 648

Query: 574 GN-NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTV 628
              +R  LN    Q+ R            +Q  S DI+   M+   +        ++L V
Sbjct: 649 KGRDRDRLNYQDEQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARLLLQV 702

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           HDE+V E P ++       +   M +       +PL  + +    + 
Sbjct: 703 HDELVFEVPLSEWEELEYQIKSTMENC--LFLSVPLVVDIHAGTNWM 747


>gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822]
 gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822]
          Length = 966

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 209/701 (29%), Gaps = 151/701 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDP-------VMPQVL 57
           D ET S   +          +  ++     +      V      H          +   L
Sbjct: 381 DTETTSLDPI----------EATLVGIGCCWGHQSTDVAYIPLNHTEGEQLPQTEVLAAL 430

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           +  LE+        N+ F+R VL     + +       T++ +          L  +   
Sbjct: 431 RSILESDQYPKAFQNTKFDRIVLL-HQGIQLA-GVVFDTMLASYVLRPEDSHKLSDLCHR 488

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             L + K    K+L               + +            YC  D   T ++  +L
Sbjct: 489 Y-LENIKSLNYKDL------------EIPKTQTIANLDISRVAHYCGMDAYATFKLVPKL 535

Query: 176 EPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                K  +L+            +   + + G  +D       +Q ++ +    +++   
Sbjct: 536 LAELEKAPDLYNLLIKVEQPLEPVLAEMENTGVRIDSQYLKAFSQKLEQDLAIFEKKAYE 595

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L   LF +  L            +T    L   +        +  +
Sbjct: 596 AAG-ESFNLGSPKQLSYILFDKLKLSKSKSRKIKTGYSTDHATLEKLQGEDRIIDYILEH 654

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   ++     ++ L   ++   GR+         + TGR S      QN+P  +     
Sbjct: 655 R-TLAKLKSTYVDALPALVHPKTGRVHTDFNQTVTT-TGRLSSSNPNLQNIPIKTE---- 708

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                 S  +R   I  EG  LV AD + IE R+LA +  E   
Sbjct: 709 ---------------------FSRQIRQAFIPEEGWLLVSADYSQIELRILAHLTQEPLL 747

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++A++  +D++  T    F    A +T ++R+IGK +   + Y  GA   Q+ A   GL+
Sbjct: 748 VEAYQNYQDVHRVTAQLLF--DKANITSEERSIGKTINFGVIYGMGA---QRFARAFGLS 802

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +             +++     +   +++           +G       + + +      
Sbjct: 803 VQEGK--EFIEKYHQKYARVFEYLERVKKEAIAKGFVTTILGR------RRYFE------ 848

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                          +     N L    P        ++   + 
Sbjct: 849 -------------------------------FFDDKLNRLRGEKP-------ENLDLKKL 870

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634
            LN +  QL R            +Q  S DI+   M+   +        ++L VHDE+V 
Sbjct: 871 ELNFSDAQLLRAAANAP------IQGSSADIIKIAMVQLQEILQQYQARLLLQVHDELVF 924

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E P  +       + + M +       +PL  E    K + 
Sbjct: 925 EVPPHEWEELEVKIKNTMENAV--NLTVPLVVEIRSGKNWM 963


>gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54]
 gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54]
          Length = 889

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/698 (15%), Positives = 197/698 (28%), Gaps = 170/698 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51
           + ID ET S            A    ++  +   +          H              
Sbjct: 316 IVIDTETTSLD----------ARTAGLVGISLCAELDRAWYIPLAHIEATGTPVPGQLPI 365

Query: 52  -VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSA 108
             +  VL+  L   D+  V HN  ++ TVLK    ++I       T+V A     G    
Sbjct: 366 SEVMAVLEPLLTCADILKVGHNLKYDWTVLKMQTGVEI--FPLADTMVAAHLLEKGRTLK 423

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L  +   + L                          R       A +    Y   DV   
Sbjct: 424 LDDLCAEIGLE-------------LTSFAEVVAEDKRADAFAYVALKEACHYSCEDVYGA 470

Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++                  E  +  +   +   G C+D  +   L    + +  +L
Sbjct: 471 LSLWQDFGEKLSDKALDGLFYDVEMPIIPVLAKMEIGGVCLDSTVLVELAAQFEEQIGEL 530

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275
              +         +    ++L   LF E GL     T+   +T  +V+       P    
Sbjct: 531 AATIYQEVGH-EFNISSPKQLGVILFEELGLPHGRKTKTGFSTDVKVMEKLASQHPVPAL 589

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +   R   ++     ++ L+   N + GR+  +      + TGR S      QN+P    
Sbjct: 590 ILKYR-TIAKLKSTYVDKLLLLKNPETGRIYTSFNQ-TITATGRLSSSNPNMQNIPIRME 647

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   +   GK  + AD + I+ RVLA  +G
Sbjct: 648 EGNR-------------------------IRRAFVPEAGKVFLAADYSQIDLRVLAHYSG 682

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +    +AF  G+D++  T A  F+V+   V  + R + K +                   
Sbjct: 683 DDALTRAFAAGQDIHARTAAELFSVSTMLVNPEMRRVAKSIN--------------FGIV 728

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    A                                        +R    +   +
Sbjct: 729 YGMSAFGLAQQ------------------------------LGIGRKEAQRFIDRYFHLY 758

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           + V +   ++    EQT E G A                           GR     D+ 
Sbjct: 759 AGVKQFMIDI---VEQTRERGYATTLL-----------------------GRRRAVPDID 792

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
                +        R            +Q  + DI+   M+   K       G  ++L +
Sbjct: 793 AKNKGMR---EFAERMAINTP------IQGTAADIIKCAMIAVEKKLAAAGLGAKMLLQI 843

Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
           HDE+V E  + +     ++    M S       +PL A
Sbjct: 844 HDELVFEVSEAELAETRVVVQEAMESALQ--LDVPLVA 879


>gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 936

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 99/704 (14%), Positives = 211/704 (29%), Gaps = 165/704 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57
            T   D ET S                 ++  +F +            +      + +  
Sbjct: 362 DTFCFDTETTSLDP----------YQAQLVGISFAYYPGEAYYVPIPAERKAAQAIIEEF 411

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEA 115
           +  LE+T    V  N  ++  +L   + +++       T+V         P  + A+ E+
Sbjct: 412 RPLLESTTQCKVGQNLKYDNLIL-RTYGIEVAP-PIFDTMVAHYLVAPDKPHNMNAIAES 469

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDR--NKPNHREAWRLFGEYCKGDVTVTREIFK 173
                         +              +   K        L  EY   D  +T ++ +
Sbjct: 470 Y-------------LNYAPIPIEALIGSRKSTQKSMRMVDVELVKEYACEDADITLQLKR 516

Query: 174 RLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE    +E            L  +   +  +G  +D  +   ++  +  E   L++E+ 
Sbjct: 517 LLELNIKQENLSKLFYEIEIPLVQVLTAMEYQGVQIDTQVLREISVTLGTELAALEKEIH 576

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
            L      +    ++L   LF +  +       +     T + VL+   K  P A  + +
Sbjct: 577 RLAGHA-FNISSPKQLGEILFDKLKIAGNNKKTKSGQYATGELVLADLTKDHPIAANILD 635

Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            R    +     ++ L++ ++  DG++  +      + TGR S      QN+P  +    
Sbjct: 636 YR-ELQKLKSTYVDALIDLISPFDGKVHTSYNQTVVT-TGRLSSTNPNLQNIPIRTEKGR 693

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396
                                     +R   +       L+ AD + IE R++A  + ++
Sbjct: 694 A-------------------------IRKAFVPSKPDHVLLSADYSQIELRIMASFSQDE 728

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF+ G+D++  T ++ F V   QV +  R   K                      G
Sbjct: 729 HMIEAFKAGKDIHTATASKLFKVPLEQVDESMRRQAKTANF--------------GIIYG 774

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    A                                     +      +A+ Q+   
Sbjct: 775 ISGFGLAQR------------------------------LGISRSEAIATIQAYFQEFHA 804

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +    + +     +    G                             GR    RD+ + 
Sbjct: 805 IKAYMDRVIGQARE---QGYVTTL-----------------------MGRKRYLRDINSR 838

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
            S L        R            +Q  + +++   M++        K    ++L VHD
Sbjct: 839 NSTLRGFD---ERNAINTP------IQGTAAEMIKLAMVHIYEWLQKEKLQSKLILQVHD 889

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V + P  +       + + M ++   A G+P++ +    K +
Sbjct: 890 ELVFDVPQHEIEIMREHVAYFMKNSLPLA-GVPVEVQIGLGKNW 932


>gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74]
 gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74]
          Length = 1024

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 93/700 (13%), Positives = 204/700 (29%), Gaps = 162/700 (23%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKE 59
            L  D ET +   +          +  ++  +F +            D      +    K 
Sbjct: 453  LCFDSETTAIDPV----------EADLVGLSFAYRAGEAFYVPVPADRAEAQAIVDQFKP 502

Query: 60   ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117
              EN  +  V  N  ++  +LK    +++   +   T++            +  +   + 
Sbjct: 503  VFENPTIEKVGQNLKYDLLMLKKY-GVEVQ-GKLFDTMIAHYLIEPEMRHNMDMMA--MT 558

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              +    E + LI +                      +   +Y   D  +T ++     P
Sbjct: 559  YLNYSPVEIEALIGK---------KGKGQLTMRDVDIQKVVDYAGEDADITLQLKHAFAP 609

Query: 178  LSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
               K+            L  +   +   G  +D      L+  ++V+  ++ QE+  +  
Sbjct: 610  RLEKDNLHKLFDQVEMPLVQVLTDLELEGIKIDTNALSELSATLEVDMRQVQQEIFEIAG 669

Query: 228  GLVSSSRCLEKLKTWLFLETGLHL-EDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    ++L   LF +  L      T+T    T + +LS  +     A ++ + R  
Sbjct: 670  -ESFNIGSPKQLGEVLFDKLKLDKNAKKTKTGQYATGEEILSKLEAEHEIARKILDYR-E 727

Query: 283  ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     ++ L   ++   GR+  +     A+ TGR S      QN+P  +   +E   
Sbjct: 728  LIKLKNTYVDALPLLISKRTGRIHTSFNQAVAA-TGRLSSTNPNLQNIPIRTPRGQE--- 783

Query: 342  IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   +       ++ AD + IE R++A  +G+Q  L+
Sbjct: 784  ----------------------IRKAFVPRGPEFVIMSADYSQIELRIMAAFSGDQTMLE 821

Query: 401  AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            AF  G D++  T ++ F+V   +VT D R   K +   + Y               L + 
Sbjct: 822  AFNNGVDIHTQTASKVFHVGLDEVTSDMRRKAKTINFGIIYGIS-----SFGLAQRLKIP 876

Query: 461  TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                          +   +++     E        +                        
Sbjct: 877  RKEAGQIIEEYFAGFPAVKDYIDQCIEKARGFGYAETI---------------------- 914

Query: 521  WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                 +RR +  +  +   + +                      
Sbjct: 915  -------------------LGRRRYLRDINSRNQTDRMF--------------------- 934

Query: 581  NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634
                    R            +Q  + D+L   M+         +    ++LTVHDE+V 
Sbjct: 935  ------AERNAVNAP------IQGSAADMLKIAMIQIHEFMQAERLKSKMILTVHDELVF 982

Query: 635  ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +    +       +  +M +      G+ ++      + +
Sbjct: 983  DAHRDEIDLLRVRVDEIMKNAIP--MGVKMETGIGTGENW 1020


>gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
 gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827]
          Length = 930

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/697 (14%), Positives = 200/697 (28%), Gaps = 147/697 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
               D ET S             ++  ++  +F  +          HD            
Sbjct: 351 IFAFDTETDSLD----------TQEARLVGMSFAIEPGYAAYLPLGHDYLDAPVQLPLND 400

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
           +   +K  LEN  +  +  N  ++  VL    ++++       T++ +      + +   
Sbjct: 401 VLAAMKPILENDKILKIGQNLKYDAEVLLNY-DIELKGIA-FDTMLESYVLNSVAGMG-- 456

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
               +     + E   L  +    E       +    ++ A      Y   D  VT  + 
Sbjct: 457 ----RHDMDSLAERH-LNHKTVSFEEIAGKGKKQLTFNQIALEQAANYAAEDADVTLLLH 511

Query: 173 KRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P               E  L  +   +  +G  +D A+    ++ +     +L++E
Sbjct: 512 QALYPQLEAEPKLNHVFREIEMPLVPVLVRMERKGVLIDAAVLAAQSKEITARLAELEKE 571

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
              L      +    ++L+T LF +  L +   T +    T + VL            + 
Sbjct: 572 AFELAG-EEFNLASTKQLQTILFEKLQLPVVKKTPSGAPSTNEEVLEELALNHALPKLLL 630

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R   ++      + L   +++  +   T      + TGR S      QN+P  +    
Sbjct: 631 EHR-SLAKLKSTYTDKLPLMISTKTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRTEEGR 689

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA +G K+V AD + IE R++A ++ ++ 
Sbjct: 690 R-------------------------IRQAFIARKGYKVVAADYSQIELRIMAHLSQDKG 724

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF  G+D++  T A  F V   +VT DQR   K +   L Y   A           L
Sbjct: 725 LLTAFAEGKDIHRATAAEVFGVPLDEVTSDQRRSAKAINFGLIYGMSA-----FGLARQL 779

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +         +   E +     +    +    E    +   G          +  +  +
Sbjct: 780 GIPRGEAQRYMDLYFERYPGVLRYMENTRHQAAEQGYVETLEGR--RLYLADIKSSN-GM 836

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   +        G A    K+  + +         L    P              
Sbjct: 837 RR--KAAEREAINAPMQGTAADIIKKAMIAVD------AWLQTEKPH------------- 875

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                                         D+L                     +V E  
Sbjct: 876 -----------------------------ADMLM----QVHDE-----------LVFEVK 891

Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +++  +  + +  LM  +      +PLK +      +
Sbjct: 892 ESELDSVTTKIRELMEQSMQ--LDVPLKVDVGIGDNW 926


>gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CNPAF512]
          Length = 997

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/717 (14%), Positives = 199/717 (27%), Gaps = 169/717 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHDP--- 51
           +  D ET S            A    ++ F+    D+                 H     
Sbjct: 399 VAFDTETTSLD----------AMQAELVGFSMAIADNVADPSGTKIRAAYVPLAHKNGVG 448

Query: 52  ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                               LK  LE+  V  VA N  ++  +LK      I    +  T
Sbjct: 449 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDT 505

Query: 97  LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           ++++           +  + E           G   I      +        N       
Sbjct: 506 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGRANVTFDLVD 553

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203
                 Y   D  VT  ++  L+P              E+ L  +   +  RG  VD  +
Sbjct: 554 IDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 613

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259
              L+  +     +L+ E+ +L      +    ++L   LF + GL     T+    +T 
Sbjct: 614 LSRLSGELAQGAARLEDEIYTLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTS 672

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL        +  +   +  + ++      + L   ++ + +   T   L ++ TGR 
Sbjct: 673 ASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRL 732

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  +    +                         +R+  I++ G KL+ A
Sbjct: 733 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 767

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +   +
Sbjct: 768 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 827

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y   A           L++             E +    ++    +    +    +   
Sbjct: 828 IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 882

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
           G          R  +  V        +A       G A    +R  + +     +     
Sbjct: 883 GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKIEPALAEAGL-- 935

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                                        R                        ++    
Sbjct: 936 ---------------------------AERVRM---------------------LLQVH- 946

Query: 620 AGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
                     DE++ E  D D      ++  +M +   P+    +PLK +   +  +
Sbjct: 947 ----------DELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDARAATNW 993


>gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2]
          Length = 935

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 197/703 (28%), Gaps = 162/703 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + +D ET S           Y E   ++  +F  +          HD            +
Sbjct: 358 IAVDTETTSVN---------YME-AELVGVSFCIEPGAAAYVPVAHDYPDAPTQLSRDYV 407

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
              LK  LE+  +  V  +  +++ VL   +++ +       T++ +           + 
Sbjct: 408 LSALKPILESETIIKVGQHIKYDKNVLA-HYDITLNGIG-FDTMLESYVLNSTAQRHDMD 465

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           ++  A          G + I      E       +    ++      G Y   D  +T  
Sbjct: 466 SLALAY--------LGHKTIHF----EEIAGKGAKQLTFNQIGLEEAGPYAAEDADITMR 513

Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + +      E             +  +   +  +G  ++       +Q +     +L+
Sbjct: 514 LHQAIWAKLENEPKLKALLVDVEVPVACVLSRMEQQGVLIESQRLRQQSQDLATRIAELE 573

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           +E+       V +    ++L+  LF +  L +   T     +T + VL       P   +
Sbjct: 574 KEVHEEAG-EVFNLGSPKQLQHILFEKMSLPVIKKTPKGAPSTSEEVLQELALEFPLPKK 632

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++      + L + +N       T      + TGR S      QN+P  +  
Sbjct: 633 LMEYR-GLTKLKNTYTDKLPKMINHRTGRVHTSYHQAITATGRLSSTDPNLQNIPIRNEE 691

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             +                         VR   +  EG K+V AD + IE R++A ++G+
Sbjct: 692 GRK-------------------------VRQAFVPREGYKIVAADYSQIELRIMAHLSGD 726

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G D++  T A  F V   +VT +QR   K +   L Y   A          
Sbjct: 727 EGLLDAFAHGRDIHKATAAEVFGVTLDEVTTEQRRSAKAINFGLIYGMSA-----FGLAK 781

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+         +   E +     +    +E   E    +   G          R    
Sbjct: 782 QLNIPRHEAQKYMDLYFERYPGVLEYMDSTREGAKEKGYVETVFGR---------RLYLP 832

Query: 516 RVS----ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            +            +A       G A    K   + +        +              
Sbjct: 833 DIKASNGARRKGAERAAINAPMQGTAADIIKMAMIKVDDWITSLESD------------- 879

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                                               D+L   MM                
Sbjct: 880 ------------------------------------DVLM--MMQVHDE----------- 890

Query: 632 IVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  +   E     +  LM         +PL  +      +
Sbjct: 891 LVFEIREEHLEEQVKNIVSLMEQAA--VLNVPLVVDAGVGDNW 931


>gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium]
          Length = 942

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 98/700 (14%), Positives = 202/700 (28%), Gaps = 160/700 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQVL---K 58
               D ET S   L          +  ++  +F              +       +   +
Sbjct: 370 EFCFDSETTSLNTL----------EAEIVGLSFAVKSFSAYYVPFPANREEAQAKINAFR 419

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              E+   T++  N  ++  VLK    ++I  ++   T+V            +  + +  
Sbjct: 420 SLFEDDTKTLIGQNIKYDFQVLKNY-GIEIK-NKLFDTMVAHFLIMPEMRHNMDILAQTY 477

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              +      + LI +                          EY   D  VT ++     
Sbjct: 478 --LNYSPVSIETLIGK---------KGKEQTSMRDVEIEKIKEYAAEDADVTFQLKTAFA 526

Query: 177 PLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P   + +           L  +   I   G  +DV      +  +  +   +++E++   
Sbjct: 527 PKLIENEVEKLFTEVEVPLIKVLANIEREGINLDVPALKEFSGQLQNDIIIVEKEIQDFA 586

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF    +      T+T    T + VLS  +   P   ++ + R 
Sbjct: 587 GTK-FNVSSPKQVGEILFDYLKIVDKPKKTKTGQYATGEDVLSKLENAHPIVSKILDYR- 644

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     ++TL E +N   +   T      + TGR S      QN+P  +        
Sbjct: 645 ELVKLKNTYVDTLPELVNEKTKRIHTSFNQVVAVTGRLSSDNPNLQNIPIRTERGR---- 700

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +R   I  +    L+ AD + IE R++A ++G++   +
Sbjct: 701 ---------------------QIRKAFIPRDSDHVLLSADYSQIELRIVASISGDKNMCE 739

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ G+D++  T A+ F VA A VTK+ R   K +                    G    
Sbjct: 740 AFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSVN--------------FGIIYG---- 781

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                     +     +       T  + +   + +++  +   
Sbjct: 782 --------------------------QGAFGLSENLNISRTEAKELIDNYFKEYGAIKSY 815

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            +       +                          N  +    GR    RD+ +  +  
Sbjct: 816 MDRTINFARE--------------------------NGYVKTLLGRKRWLRDITSANA-- 847

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
            T      R            +Q  + D++   M+N             ++L VHDE+V 
Sbjct: 848 -TVRSYAERNAINAP------IQGSAADMIKVAMINIYNELEKQNFKTKMLLQVHDELVF 900

Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +    +      +   LM         +P++        +
Sbjct: 901 DVYKPELEKVKPIIEKLMREALP--LDVPVEVGLGTGDNW 938


>gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3]
          Length = 732

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/717 (14%), Positives = 198/717 (27%), Gaps = 169/717 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHDP--- 51
           +  D ET S            A    ++  +    D+                 H     
Sbjct: 134 VAFDTETTSLD----------AMQAELVGISMAIADNVADPSGTKIRAAYVPLSHKNGVG 183

Query: 52  ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                               LK  LE+  V  VA N  ++  +LK      I    +  T
Sbjct: 184 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDT 240

Query: 97  LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           ++++           +  + E           G   I      +        N       
Sbjct: 241 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGRANVTFDLVD 288

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203
                 Y   D  VT  ++  L+P              E+ L  +   +  RG  VD  +
Sbjct: 289 IDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 348

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259
              L+  +     +L+ E+ +L      +    ++L   LF + GL     T+    +T 
Sbjct: 349 LSRLSGELAQGAARLEDEIYTLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTS 407

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL        +  +   +  + ++      + L   ++ + +   T   L ++ TGR 
Sbjct: 408 ASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRL 467

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  +    +                         +R+  I++ G KL+ A
Sbjct: 468 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 502

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +   +
Sbjct: 503 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 562

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y   A           L++             E +    ++    +    +    +   
Sbjct: 563 IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 617

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
           G          R  +  V        +A       G A    +R  + +     +     
Sbjct: 618 GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKIEPALAEAGL-- 670

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                                        R                        ++    
Sbjct: 671 ---------------------------AERVRM---------------------LLQVH- 681

Query: 620 AGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
                     DE++ E  D D      ++  +M +   P+    +PLK +   +  +
Sbjct: 682 ----------DELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDARAATNW 728


>gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
 gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942]
          Length = 953

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/701 (15%), Positives = 222/701 (31%), Gaps = 154/701 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDP-------VMPQVL 57
           D ET                   ++     + + P +       H+         +   L
Sbjct: 371 DTETTDLDP----------RLAQLVGIGCAWGEEPDQLAYIPLGHEEGEQLPLQTVLTAL 420

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +  LE+        N+ F+R +L     +++       T++ +         +L A+ + 
Sbjct: 421 RPILESDRHPKALQNAKFDRLIL-RHQGIELA-GVVFDTMLASYLLNPSLGHSLDALADR 478

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            LKL ++   +                   + K   + A     +YC  DV V + +   
Sbjct: 479 WLKLQTRSYSDL----------------VPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPL 522

Query: 175 LE------PLSSKEQELWY-----LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L+      P      E        +   + DRG  +D      L++ +  E  +L+    
Sbjct: 523 LKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEGAAH 582

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFN 278
           +L      +    ++L   LF + GL+++    T+   +T   VL   +   P    +  
Sbjct: 583 TLAGDR-FNLGSPKQLSELLFEKLGLNVKKSRKTKTGYSTDAAVLEKLQGDHPIIDLILE 641

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   ++     ++ L   + +DGR+         + TGR S      QN+P  +     
Sbjct: 642 HR-TLAKLKSTYVDALPSLVAADGRIHTDFNQAV-TATGRLSSSNPNLQNIPIRTE---- 695

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                 S  +R   +  EG  L  AD + IE R+LA ++ E   
Sbjct: 696 ---------------------FSRQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVL 734

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+A+  G+D++  T +  F     ++T ++R IGK++   + Y  GA+ F          
Sbjct: 735 LEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIYGMGAQRF-----ARETG 787

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +T       +   + +     + + ++         +  +G       + +        
Sbjct: 788 SSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGR------RRYFD------ 835

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                             +D     L      S+    +  +R 
Sbjct: 836 ---------------------------------FEDTGLQKLRGSDPESIDLDKIRPSRF 862

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634
                  QL R            +Q  S DI+   M+            ++L VHDE+V 
Sbjct: 863 -----EAQLLRAAANAP------IQGSSADIIKVAMVQLQALLQSYQARMLLQVHDELVL 911

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E P  +  + +  +   M         +PL  E +    + 
Sbjct: 912 ELPPEEWDSLAPQIQQTMEQAVQ--LTVPLAVELHAGHNWM 950


>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
 gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP]
          Length = 962

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 100/724 (13%), Positives = 207/724 (28%), Gaps = 179/724 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET              A    ++  +F   +         H   +        
Sbjct: 362 KLVAVDTETD----------NVDAMSAHLVGISFSLSNGEACYIPLAHTQQISVQPQQED 411

Query: 54  -------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
                                       LK  LEN ++  V  N  ++ TV      +++
Sbjct: 412 LFAETDNDAITQFQLASNQLNLTACLAQLKPLLENVEIKKVGQNIKYDLTVFANH-GIEL 470

Query: 89  PIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                  T++ + +        +  + E              L  +    E         
Sbjct: 471 QGVA-FDTMLESYTLNSTGRHNMDELAERY------------LDHKTIAFEDIAGKGKNQ 517

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFK-----------RLEPLSSKEQELWYLDQTINDR 195
               + A     EY   D  +T ++ +            ++  +  E  L  +   +   
Sbjct: 518 LTFDKIAIETATEYAAEDADITMKLHQQLITSLAKTPSLIKLFNEIEMPLVNVLARVEQN 577

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +D       ++ ++    +++  + +       +    ++L+  LF +  L +   T
Sbjct: 578 GVLIDSDKLLAQSKEMEQRLAEVEIAVHTAAGQA-FNLASTKQLQEILFEKLALPVLKKT 636

Query: 256 E----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310
                +T + VL    +      ++ +     S+      + L + +N   GR+  +   
Sbjct: 637 PKGAPSTNEEVLEQLAQQGHLVPKLLSEHRALSKLKSTYTDKLPKMINQHTGRVHTSYHQ 696

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P  + +                            +R   IA
Sbjct: 697 AVTT-TGRLSSSDPNLQNIPIRTEAGRR-------------------------IRQAFIA 730

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            +G K+V AD + IE R++A +A ++  + AF  G+D++  T A  F ++ A+VT +QR 
Sbjct: 731 RDGYKIVAADYSQIELRIMAHLANDEGMITAFANGQDIHQATAAEIFGLSLAEVTSEQRR 790

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   L Y               L ++            + + + + F R ++E+  
Sbjct: 791 SAKAINFGLIYGMS-----DFGLANQLAISRDEAKEYMARYFQRYPNVQQFMRDIRESAS 845

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                +   G          R     +       + A  +      AI A  +     + 
Sbjct: 846 VKGYVETLFGR---------RLYLPEIKS-----NNAIRRKAAERLAINAPMQGTAADII 891

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                                        + +  +Q+ R                    +
Sbjct: 892 KI--------------------------AMISIDKQI-RADQN----------------I 908

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYE 669
              M             VHDE++ E           ++   M      A  +PL AE   
Sbjct: 909 KMIM------------QVHDELIFEVKQECIEYYTGLIKTEMEKAI--AMKVPLIAEVGV 954

Query: 670 SKRY 673
              +
Sbjct: 955 GANW 958


>gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 997

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/686 (14%), Positives = 201/686 (29%), Gaps = 153/686 (22%)

Query: 27  DVCVILFAFGFDDHPVELWDCVH-------------DPVMP-----QVLKEALENTDVTI 68
              +I  A              H             +  +P      VLK  LE+  V  
Sbjct: 422 QAELIGMAIATAPGRAAYIPFAHMSGNGDLLGGGALENQIPLREALAVLKPLLEDRSVLK 481

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEALKLSSQKME 124
           +A N  ++  ++       + +  +  T++++            + A+ E          
Sbjct: 482 IAQNLKYDLVIMSRY---GVDVAPFDDTMLISYVLDAGTPHGHGMDALAE---------- 528

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179
             K L     + +        +    +        +   D  VT  ++  L+P       
Sbjct: 529 --KWLGHTPLQLKDVTGSGKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGL 586

Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E+ L  +   +  RG  VD  +   L+  +     +L++E+  L    + +  
Sbjct: 587 VSVYERLERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLIGERI-NIG 645

Query: 235 CLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             ++L   LF   GL     T+    +T  ++L        +  +   +  + ++     
Sbjct: 646 SPKQLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTY 705

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            + L   ++ D +   T   L A+ TGR S      QN+P  +    +            
Sbjct: 706 TDALPGFIHPDTKRVHTSYALAATTTGRLSSSDPNLQNIPVRTAEGRK------------ 753

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R+  I  +  +LV AD + IE RVLA +A      +AF  G D++ 
Sbjct: 754 -------------IRTAFITDKSHRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHA 800

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  FNV    +  + R   K +   + Y   A           L++           
Sbjct: 801 ITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISA-----FGLANQLSIPREEAGNYIKK 855

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             E +    ++    +    EH   +   G          R  +  +        +A   
Sbjct: 856 YFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYP--DIRSSNPSLRAFN---ERASIN 910

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
               G A    +R                                    +      L R 
Sbjct: 911 ARLQGTAADIIRR-----------------------------------AMIRMEEALERA 935

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649
                         +S                 ++L VHDE++ ET + +      +   
Sbjct: 936 -------------GLSA---------------RMLLQVHDELIFETVEAEVEATIPVVRH 967

Query: 650 LMTSN--PSWAKGLPLKAEGYESKRY 673
           +M +   P+ +  +PL  +   +  +
Sbjct: 968 VMENAAMPAVSMSVPLHVDARAANNW 993


>gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13]
 gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13]
          Length = 901

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 94/701 (13%), Positives = 207/701 (29%), Gaps = 165/701 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------MPQV 56
           +D ET S   +          +  ++  +  +           H  +         +   
Sbjct: 329 LDTETDSLNFM----------EARLVGVSLAYQAGKACYIPLQHQDMSIPQLPLNLVLNK 378

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGE 114
           +K   EN ++T V  N  ++  VLK   ++         T++++          +  + +
Sbjct: 379 IKSITENENITKVGQNIKYDMHVLKNY-DVTFK-GPIEDTMIMSYVIDSTESHGMDKLAK 436

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                        + I+     E+      +     + +      Y   D  VT ++++ 
Sbjct: 437 KY--------LDHDCISF----ESVVGKGVKQLTFDQVSIDDAYLYASEDADVTLQLYEH 484

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L                 E         I   G  +   + H  NQ + ++   L+ E  
Sbjct: 485 LNKKIIADSKLNYIYKEIEIPSLLTLFCIERNGVLISEKILHDQNQDLGLKILNLENEAY 544

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+  LF +  +     T     +T + VL            +  +
Sbjct: 545 QIAEQP-FNLSSPKQLREILFDKMKIIPTKKTPTGTPSTSEDVLEELSHDHALPKVILEH 603

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + +N + +   T      + TGR +      QN+P  ++   + 
Sbjct: 604 R-SLSKLKNTYTDKLPKMINLNTKRIHTSYNQAVAITGRLASSEPNLQNIPIKTKEGRK- 661

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   VR   IA+   ++V  D + IE R++A ++ +   L
Sbjct: 662 ------------------------VREAFIANTDSQIVSCDYSQIELRIMAHLSKDPGLL 697

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   ED++ +T +  FN   A V+ +QR   KV+                    G++ 
Sbjct: 698 DAFNQNEDIHRSTASAIFNTNDASVSSEQRRFAKVIN--------------FGLIYGMS- 742

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            +        + +     + +K+  V  
Sbjct: 743 -----------------------------AFGLSQTLNIDRNSAKNFIDQYFEKYPGVKN 773

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             ++     ++                             +    GR L    + ++   
Sbjct: 774 YMDQGKLVAKE--------------------------QGYVETVFGRRLWVPLINSSNGI 807

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIV 633
                 +               +Q  + D++   M N        K    +++ VHDE+V
Sbjct: 808 QRAAAER---------AAINAPMQGTAADLIKMAMNNVQQWIGDNKLETLMIMQVHDELV 858

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P+ +       +  +M++  +    +PL A+      +
Sbjct: 859 LEVPNAELDIIKTEIPKIMSNVAT--LDVPLIADLGSGINW 897


>gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
 gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23]
          Length = 921

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 98/694 (14%), Positives = 192/694 (27%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQV---L 57
             L +D ET S   +          D  ++  +F   +          +     Q+    
Sbjct: 349 KILSLDTETTSTSAI----------DAELVGLSFAVKEFEAFYVPVPANREEALQIVNIF 398

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           K A EN ++  V  N  ++  VL+    +++    W  T++            +  + E 
Sbjct: 399 KPAYENPEILKVGQNLKYDLEVLRNY-GIELKGKMW-DTMIAHYLIQPELHHNMDYMAEI 456

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               + +    +ELI                K           EY   D  +T  +  +L
Sbjct: 457 Y--LNYQTIHIEELIG---------PKGKNQKSMRSLPPSQVYEYAAEDADITLRLKNKL 505

Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L  +   +   G C+D A     ++       +++  +  L
Sbjct: 506 EPELKKAECEDLFYNIEMPLMPVLAEMELNGVCLDTASLAETSKQFTNRMNEIEARIYEL 565

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL   +        +  +R
Sbjct: 566 AG-EQFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLQQLRNKHEIVADILEHR 624

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L + +N       T      + TGR S      QN+P      +E  
Sbjct: 625 -GLKKLIGTYIDALPKLINPKTGHIHTSFNQTITATGRLSSSDPNLQNIPIRGEDGKE-- 681

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I   G     AD + IE RV+A ++ +   +K
Sbjct: 682 -----------------------IRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAEMIK 718

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            F  G+DL+  T A  +     +VT+D+R   K     + Y               L++ 
Sbjct: 719 VFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIYGITV-----FGLAERLDIP 773

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                +  +   + +    ++    +E   E                             
Sbjct: 774 RDEAKMLIDGYFDTFPQVHDYMEKSKEVAREKGYVTTLF--------------------- 812

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                +RR +P +              +        +       
Sbjct: 813 --------------------GRRRYLPDINSHNATVRGFAERNA--------INAPIQGT 844

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                ++     Y     E I                      ++L VHDE+       +
Sbjct: 845 AADIIKVAMIRIYNRFKAEGI-------------------RSKMILQVHDELNFSVYPDE 885

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M +       +PL A+    K +
Sbjct: 886 KEKVEGIVLQEMQNA--LNLSVPLVADSGFGKNW 917


>gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
 gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium
           etli CIAT 652]
          Length = 997

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/717 (14%), Positives = 199/717 (27%), Gaps = 169/717 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHDP--- 51
           +  D ET S            A    ++ F+    D+                 H     
Sbjct: 399 VAFDTETTSLD----------AMQAELVGFSMAIADNVADPTGTKIRAAYLPLAHKNGVG 448

Query: 52  ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                               LK  LE+  V  VA N  ++  +LK      I    +  T
Sbjct: 449 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDT 505

Query: 97  LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           ++++           +  + E           G   I      +        N       
Sbjct: 506 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGRANVTFDLVD 553

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203
                 Y   D  VT  ++  L+P              E+ L  +   +  RG  VD  +
Sbjct: 554 IDRATHYAAEDADVTLRLWLVLKPRLVAAGLTSVYERLERPLLPVLARMEARGITVDRQI 613

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259
              L+  +     +L+ E+ +L      +    ++L   LF + GL     T+    +T 
Sbjct: 614 LSRLSGELAQGAARLEDEIYTLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTS 672

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL        +  +   +  + ++      + L   ++ + +   T   L ++ TGR 
Sbjct: 673 ASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRL 732

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  +    +                         +R+  I++ G KL+ A
Sbjct: 733 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 767

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +   +
Sbjct: 768 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 827

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y   A           L++             E +    ++    +    +    +   
Sbjct: 828 IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 882

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
           G          R  +  V        +A       G A    +R  + +     +     
Sbjct: 883 GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKIEPALAEAGL-- 935

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                                        R                        ++    
Sbjct: 936 ---------------------------AERVRM---------------------LLQVH- 946

Query: 620 AGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
                     DE++ E  D D      ++  +M +   P+    +PLK +   +  +
Sbjct: 947 ----------DELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVDARAATNW 993


>gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone
           ASNC3046]
          Length = 976

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 110/712 (15%), Positives = 201/712 (28%), Gaps = 160/712 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------- 50
            + +D ET S   +          +  ++       +    +      H           
Sbjct: 382 IVSLDTETNSLNPI----------NAELVGIGLCLGEENDDLFYIPLGHQTKKGTSNQLS 431

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPS 107
              +   L+  +E+        NS F+R +      LD+       TL+           
Sbjct: 432 IEDVFSKLRNWIEDPKKEKALQNSKFDRQIFFNH-GLDLK-GVTFDTLLADYLLNNQEKH 489

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L  +   L                  K    +    +NK            YC  DV +
Sbjct: 490 GLSEISFRL---------------FGFKPPLFKETVGKNKDFSFVDIDEASIYCGYDVFL 534

Query: 168 TREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           T +I K  +                 E  L  +   +   G  +D+     L++ +    
Sbjct: 535 TFKIVKIFKESFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTL 594

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270
             ++ ++  L      +    ++L   LF +  L  +    T+   +T   VL       
Sbjct: 595 EDIESKVYELAG-ENFNLSSPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVDEH 653

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                +  +R   S+     ++ L   +N   GR+        A+ TGR S      QN+
Sbjct: 654 EIIQHLIKHR-TLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +  +  KL+ AD + IE R+L
Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKNWKLLSADYSQIELRIL 746

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A E+  + AF   +D++  T    F     +++ ++R +GK +   + Y  G K   
Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSEERRVGKTINFGVIYGMGIKK-- 802

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
             A +TG++              E +     F    +             G   E     
Sbjct: 803 -FARSTGVSTPE--AKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK 859

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                  +     K+   + L S R   
Sbjct: 860 -------------------------------------NGLGRLIGKDPYEIDLQSARR-- 880

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
                           Q  R            +Q  S DI+   M+   K          
Sbjct: 881 -----------AGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNIPAK 923

Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE++ E  PD+ E    ++   M         +PL  +      + 
Sbjct: 924 MLLQVHDELLFEVEPDSLEITTKLVKKTMEDCVK--LNVPLLVDIGIGDNWM 973


>gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 896

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 205/705 (29%), Gaps = 167/705 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMP 54
              ID ET S                 ++  +   D+         H+          + 
Sbjct: 324 IFAIDLETSSLDP----------HCAKIVGVSISIDEGSGYYIPIAHESDGWQADRDYVL 373

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKA 111
           + LK+ LE+    I+  N  F+ +VL     +  P+     T++ A      +    L  
Sbjct: 374 KNLKKLLEDRSTKIIGQNLKFDYSVLA-VNGIH-PVVPDFDTMLAAYLLSPDAKRFNLDE 431

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +   +K    K  + ++L+                    +        Y   D  ++  +
Sbjct: 432 LA--MKFLGYKTIKFEDLMK----------KNQLGDDFTKVPLEEAARYSVEDADISLRL 479

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              L     ++            L  +   +   G   DV     L++       K+ +E
Sbjct: 480 SSVLRKKIYEQELEEIFRKVELALIPVLADLELNGVYFDVPSLKNLSEKYGKILDKILEE 539

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
           L  LT     +     ++   LF   GL     T+    +T    L       P   ++ 
Sbjct: 540 LFDLTG-EQFNPNSPSQVGKVLFERLGLTPSKKTKGGSYSTSADALEEIADEHPAVQKLL 598

Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
           + R +  +     L++L E +N   GR+  +    G + TGR S      QNLP      
Sbjct: 599 DYR-KYQKLKSTYLDSLPELVNKVTGRIHTSYHQTG-TGTGRLSSSNPNMQNLPIRDEEG 656

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGE 395
           +E                         +R CVI   +G K+V AD + IE R+LA ++ +
Sbjct: 657 KE-------------------------IRKCVIPQKKGWKIVSADYSQIELRILAHLSQD 691

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF+  +D++  T +  + +  ++V+++QR I                    +   
Sbjct: 692 KQLLDAFKNDKDVHSLTASNLYGIKESEVSEEQRRI--------------GKMINFSIIY 737

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    A                                        E +   + +   
Sbjct: 738 GISSYGLASR------------------------------LRIPTNVAEEMISNYFKAFP 767

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V     +     ++                             +    GR         
Sbjct: 768 EVRAFIRDTISEAKE--------------------------KCFVRTMFGRKREIPQFKT 801

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
                    ++  R            +Q  + DI+   M+         +     +L VH
Sbjct: 802 KN---RNVIQEGERIAINTP------IQGTAADIMKMAMIKIYNLLKEKEMESFAILQVH 852

Query: 630 DEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE+V E P+ +      +    M+        +PL  E      +
Sbjct: 853 DEMVYEAPEKEIEKLKEILKEGMSEVVE--LSVPLDIEISVGDYW 895


>gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
 gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009]
          Length = 1025

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 100/710 (14%), Positives = 198/710 (27%), Gaps = 168/710 (23%)

Query: 11   RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------------- 51
               + L             +I  A     +       +H                     
Sbjct: 433  TGIVALETVATSIDPMQAELIGLALALGPNDACYIPLLHKQSGDGDGLFAAGLAPDQIGP 492

Query: 52   -VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PS 107
                  LK  LE+  V  V     F   +L       + +       +++ +        
Sbjct: 493  RDALDALKPILESAGVAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSH 549

Query: 108  ALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            AL A+ E+ L  +   + E                         +        Y      
Sbjct: 550  ALDALSESNLGHTLHTLTEL-------------TGTGKNKIGFDQVPVDRATAYAAERAD 596

Query: 167  VTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            V+  + + L+P            + E+ L  +   +  RG  +D  +   L+        
Sbjct: 597  VSLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAA 656

Query: 217  KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272
            +++ E+  L    + +    ++L   LF + GL     T+    +T  +VL    +   +
Sbjct: 657  RIEAEIRELAGEDI-NIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHE 715

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +   +  + S+      + L   ++       T   L A+ TGR S      QN+P  
Sbjct: 716  FPRKILDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVR 775

Query: 333  SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
            +    +                         +R   +A+ G KLV AD + IE R+L+ +
Sbjct: 776  TEDGRK-------------------------IRRAFVATPGNKLVSADYSQIELRLLSEV 810

Query: 393  AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
            A      KAF+ G D++  T +  F V    +  + R   K +                 
Sbjct: 811  ADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------------G 856

Query: 453  STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               G++    A+ +                                         K + +
Sbjct: 857  IIYGISAFGLANQLSI------------------------------PREEAGAYIKRYFE 886

Query: 513  KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            +   +    +E          +G                             GR   Y D
Sbjct: 887  RFPGIRAYMDETRDF---CRNHGYVTTL-----------------------FGRKCHYPD 920

Query: 573  VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL 626
            +  +     +      R             Q  + DI+   M+         K    ++L
Sbjct: 921  IKASNP---SIRAFNERAAINARL------QGSAADIIRRAMVRMEDALAEKKLSAQMLL 971

Query: 627  TVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             VHDE++ E P+ +      ++  +M     P+    +PL+ +   +  +
Sbjct: 972  QVHDELIFEVPEAEVEATLPVVRAVMQDAPFPAVILNVPLQVDARAADNW 1021


>gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
 gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53]
          Length = 1012

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 94/693 (13%), Positives = 193/693 (27%), Gaps = 166/693 (23%)

Query: 27   DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66
               +   A     +        H                         + L+  LE+  V
Sbjct: 436  QAELCGLALALTPNEACYIPLGHKQSGDGDGLFAAGLAPDQIGTRDALEALRPLLESPGV 495

Query: 67   TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKM 123
              +  N  F   +L       + +       +++ +         L A+ E         
Sbjct: 496  LKIGFNIKFTAVLLAQH---GLTLQNHDDVQLMSYALDAGRHAHGLDALAE--------N 544

Query: 124  EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              G + ++                   + A      Y   D  V   +++ L+P  + E+
Sbjct: 545  WLGHKALSY----GEVIGSGKAKLGFDQVAIDRATCYAAEDADVALRLWRILKPRLTAER 600

Query: 184  ELWY----------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
             +            +   +  RG  +D  +   L+        +++ E+  +      + 
Sbjct: 601  MMTVYETLERPLIGVLARMERRGISIDRQVLARLSSDFAQTAARIEAEIREIAG-EELNI 659

Query: 234  RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF + GL     T+    +T   +L    +   Q  +   +  + S+    
Sbjct: 660  GSPKQLGDVLFGKMGLPGGKKTKTGAWSTSASILDELAEEGHQFPRKILDWRQVSKLRST 719

Query: 290  KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
              + L   ++       T   L A+ TGR S      QN+P  +    +           
Sbjct: 720  YTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK----------- 768

Query: 350  ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                          +R   IA+ G KLV AD + IE R+L+ +A       AF+ G D++
Sbjct: 769  --------------IRRAFIAAPGHKLVSADYSQIELRLLSEVAEVPALRTAFQDGIDIH 814

Query: 410  VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              T +  F V    +  + R   K +                    G++           
Sbjct: 815  AMTASEMFGVPVKDMPGEVRRRAKAINF--------------GIIYGIS----------- 849

Query: 470  SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                   A +            K + ++   + +  +   +   
Sbjct: 850  -------------------AFGLANQLGIPREEAGAYIKKYFERFPGIRDYMDATKEFCR 890

Query: 530  QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                                       +  +    GR   Y D+  +     +      R
Sbjct: 891  --------------------------AHGYVETLFGRKCHYPDIKASNP---SIRAFNER 921

Query: 590  EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643
                         Q  + DI+   M+    A         ++L VHDE++ E PD +   
Sbjct: 922  AAINARL------QGTAADIIRRAMVRMEDALAAKQLSAQMLLQVHDELIFEVPDDEVAA 975

Query: 644  -ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
               ++  +M     P+    +PL+ +   +  +
Sbjct: 976  TLPVVQQVMQDAPFPAVLLSVPLQVDARAADNW 1008


>gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797]
 gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797]
          Length = 900

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/706 (15%), Positives = 210/706 (29%), Gaps = 168/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--------HDPVM 53
               +D ET                +  ++ +A  ++ H                    +
Sbjct: 318 DEFCVDLETTGLKP----------AEAEIVGWAISWEKHRGFYIPVEGPSGQLALDPQYV 367

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
            + LK  LE+ ++ I   N  ++  VL     + +        +V +          +L 
Sbjct: 368 LEHLKPILEDPEILITNQNIKYDMVVLMR-VGVFLQGVSI-DPMVASYLISAGERGHSLD 425

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E     +  M    ELI              + K           EY   D  +  +
Sbjct: 426 KLSERY--LNHTMIPISELI----------GSGKQQKKMFEVDVDKVAEYAVEDAEIAWQ 473

Query: 171 IFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           + + L+               E+ L  +   +   G  VD A     +Q+++   T L  
Sbjct: 474 LSRILQDELKHAGLWELYWELERPLISILAEMEFTGIKVDTAELKQQSQLLEKRLTTLIS 533

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           E+  +      +     +L+T LF E  L +   T+   +T Q VL     L     ++ 
Sbjct: 534 EIHEIAGH-EFNIASPLQLRTVLFEELNLPVFKKTKTGPSTDQSVLEKLAPLHALPARIT 592

Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            +R   S+     L+ L   +N + GR+  +   + A+ TGR S      QN+P  ++  
Sbjct: 593 EHRH-LSKLKSTYLDALPGLVNPETGRIHASFNQVVAA-TGRLSSSDPNLQNIPVRTQEG 650

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGE 395
                                      +R   I   E  +L+ AD + IE R+LA ++ +
Sbjct: 651 R-------------------------QIRKAFIPQDENWRLLCADYSQIELRILAHLSQD 685

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  G D++    +  F V   QV  D R   K +                    
Sbjct: 686 VALSQAFREGADIHTAVASDIFRVPHDQVDSDMRRTAKAVN--------------FGVIY 731

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G +    +  +                                  +      + +  ++ 
Sbjct: 732 GQSPFGLSEAI------------------------------GIPQSEAAGFIEDYFVRYQ 761

Query: 516 RVSELWNEL-HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            V E  +++     +Q                             +    GR     ++ 
Sbjct: 762 GVREFLDQILEDCAKQ---------------------------KFVETICGRKR---EIQ 791

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
             R  +        R           ++Q  + D++ + M+N +           +++ +
Sbjct: 792 GVRGGVQKQLNMPERTAI------NTVIQGSAADLIKQAMLNVSDRIKQEQHPGRMLMQI 845

Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E P T      ++    M S       +PL  +      +
Sbjct: 846 HDELVFEVPLTALDTLGLIVREEMESAMD--LEVPLIVDMSSGLNW 889


>gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium]
          Length = 944

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 220/705 (31%), Gaps = 168/705 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
               D ET S + +          +  ++  A  +            D      + +  +
Sbjct: 370 EFCFDTETTSLVAI----------EAELVGLALSYYAGEAYYVPFPADKAQTQAILEEFR 419

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-A 115
             LE+ ++  +  N  ++ TVLK   N++I       T++ +         ++ A+ E  
Sbjct: 420 GVLESENIKKIGQNLKYDITVLKKY-NIEIK-GECFDTMLASYLLDPDNRHSMDAMAEKY 477

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L  S  K++    LI                        +   EY   D  +T ++ +  
Sbjct: 478 LNYSPVKIDT---LI------GKKSTKNTTQGNMRDVEVQKVVEYAGEDADITLQLKEYF 528

Query: 176 EP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            P             + E  L ++   I   G  +D       ++I+D +   L+Q + +
Sbjct: 529 APKVAERPILEKLFKTVEMPLMHVLAHIEATGVRIDTQALAESSEILDKDIKILEQTIYT 588

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           L+   V +    ++L   LF +  L       +     T + VL+          Q+   
Sbjct: 589 LSG-EVFNIASPQQLGKVLFEKLNLMKNPPKTKTGQYATGEEVLTKL-TDNEIVQQILEI 646

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R    +     ++ L   ++  DGRL  +      + TGR S      QN+P  +    E
Sbjct: 647 R-ELQKLKSTYVDALPALVSKIDGRLHTSYNQAVVA-TGRLSSTNPNLQNIPIKTAKGRE 704

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397
                                    +R   I   +   ++ AD + IE R++A  + ++ 
Sbjct: 705 -------------------------IRKAFIPTDDDFVILSADYSQIELRLIAAFSQDET 739

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF  G D++  T ++ + +   +VT D R + K                  A   G 
Sbjct: 740 MMEAFNNGTDIHTATASKIYKIDIQEVTADMRRMAKTANF--------------AILYGS 785

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    +  +K +++                                +++  ++  + S V
Sbjct: 786 SAFNLSAQLKISTS------------------------------EAKKLIDSYYGEFSAV 815

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +  +E+ Q   Q                                  GR      +    
Sbjct: 816 KKFKDEMIQKARQ--------------------------FEYAETFLGRRRYLAGINGGA 849

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDE 631
                      R          + +Q  + D++   M++        K    ++L VHDE
Sbjct: 850 MVSGQ----AERNA------VNSPIQGTAADMIKLAMIDIHRFMMREKMQSKMILQVHDE 899

Query: 632 IVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLK--AEGYESKRY 673
           +V +   ++       +  LM +    A  LP++   E    K +
Sbjct: 900 LVFDAHKSEIDFLKENVIKLMEN----ALLLPVRIGVEAGVGKNW 940


>gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708]
 gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708]
          Length = 982

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/709 (14%), Positives = 207/709 (29%), Gaps = 150/709 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PV 52
             +  D ET +              D  ++     +             H         +
Sbjct: 385 KPVAWDTETTALEP----------RDAALVGIGCCWGTGSDEAAYIPVGHKIGHNLQLDL 434

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALK 110
           +   L+  LEN +      N+ F+R + K C  +++ +     T++ +          L 
Sbjct: 435 VVSALRPILENANYPKTFQNAKFDRLIFK-CQGINL-VGVVFDTMLASYLINPDTTHNLS 492

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +             G +L              +  K        +   YC   V  T +
Sbjct: 493 DLSLR--------NLGLQLTEYNDIVTK-TGKKELQKNIADIGIDIVAYYCGTQVYATFQ 543

Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  +L                 EQ L  +   +   G  ++ +    L+Q ++ E  KL+
Sbjct: 544 LVDKLRCELNKTPDLAKLLVEVEQPLEAVLAEMEYTGVRINSSYLQELSQQLESELAKLE 603

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLT--PQ 272
            +   +      +    ++L   LF + GL  +         +T    L   +++     
Sbjct: 604 IQATEI-ASEKFNLDSPKQLSYILFDKLGLSTKYSRKIQTGYSTDAATLEKLQEVDNTGF 662

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              +   R  +S+     ++ L   ++    RL        A+ TGR S      QN+P 
Sbjct: 663 VDAIIEYR-TSSKLKSTYVDALPALVHPQSQRLHTDFNQ-TATSTGRLSSSNPNLQNIPI 720

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +                           S  +R   +   G  +V AD + IE R+LA 
Sbjct: 721 RTA-------------------------FSRQIRKAFLPESGWLMVAADYSQIELRILAH 755

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ E   ++A++  ED++  T    F     +VT ++R   K +   + Y  G+      
Sbjct: 756 LSQEPVLVQAYKQNEDIHTVTAKLVF--EKDEVTSEERRFAKTINFGVIYGMGSLK---F 810

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A +TG++              E +     +   +++        +               
Sbjct: 811 ARSTGVD--KANANEFIRRFNERYPQVFAYLEKVKKEAISQGYVETI------------- 855

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                                         +RR          +            +   
Sbjct: 856 ----------------------------LGRRRYFDFTSKSLKELKG---------ISLE 878

Query: 572 DVGNNRSY-LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVL 626
           D+  +R   L      L R            +Q  S DI+   M+   +        ++L
Sbjct: 879 DIDLSRLKNLGAYNAGLLRSAANAP------IQGSSADIIKIAMVQLHEVLRNYQARLLL 932

Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            VHDE+V E P  +       +  +M +  S    +PL  +      + 
Sbjct: 933 QVHDELVFEVPPQEWGELQLQIKSVMENAMS--LSVPLVVDVRAGDNWM 979


>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
 gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
          Length = 941

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 193/703 (27%), Gaps = 161/703 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------------- 50
            ID ET S   +             ++  +   +          H               
Sbjct: 362 AIDTETTSLDPML----------AQLVGISLSVEPGEACYIPVGHRGPDVAGMENNGQLS 411

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--S 107
              +   ++  LE+     +  N  ++  V      + +       T++ +         
Sbjct: 412 RDTVLARMRAWLEDDSKPKLGQNIKYDIHVFANH-GVTLCGVA-QDTMLESYVLASHRNH 469

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            + ++ E L            L  +    E             +       EY   D  V
Sbjct: 470 GMDSLAERL------------LNLKTITYEEVCGKGASQIGFDQIDLARATEYAAEDADV 517

Query: 168 TREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           T  + +++ P               E  +  + Q I   G  +D       +  +     
Sbjct: 518 TLRLHRKMFPQVSAAAGLRRVYEEIEIPVSVVLQKIERNGVLIDAERLAAQSAELGQRML 577

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQ 272
            L+Q           +    +++   LF +  L +   T     +T + VL    +  P 
Sbjct: 578 SLEQAAYDAAGQP-FNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLAEDYPL 636

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              + + R   ++      + L + +N +     T      + TGR +      QN+P  
Sbjct: 637 PKLLLDYR-GLAKLKSTYTDKLPKMVNPNTGRVHTSYGQATAVTGRLASTEPNLQNIPVR 695

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R   IAS G  +V AD + IE R++A +
Sbjct: 696 TEEGRR-------------------------IREAFIASPGSVIVSADYSQIELRIMAHI 730

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  L+AF  GED++  T +  F V    V+ +QR   KV+   L Y   A       
Sbjct: 731 SGDENLLRAFANGEDIHRATASEIFGVDREAVSSEQRRYAKVINFGLIYGMSA-----FG 785

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
             + L +   A     +     +     +    ++   E    +   G            
Sbjct: 786 LASNLGIEREAAKHYIDRYFMRYPGVAQYMEDTRQTAREQGYVETVFGR----------- 834

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                  LW                                      +   SG      +
Sbjct: 835 ------RLW-----------------------------------LPDINGGSGPRRQAAE 853

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQA-VSRDILAEGMMNATKAGYDIVLTVHDE 631
                + +  T   L        KL+   VQ  + RD          +   ++VL     
Sbjct: 854 RAAINAPMQGTAADLI-------KLSMIAVQGWLERD--KLQTRQIMQVHDELVL----- 899

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              E P  +       L  LM S       +PL AE      +
Sbjct: 900 ---EVPQDELDVVKTRLPELMCSVAQ--LRVPLVAEVGSGANW 937


>gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
 gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1]
          Length = 929

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/697 (15%), Positives = 204/697 (29%), Gaps = 154/697 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           + +D ET     +T            ++  +F  + H        H              
Sbjct: 356 VSLDTETTGLDGMT----------AQLVGISFSIEAHQAAYLPLAHHYPGAPDQLGREHA 405

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKA 111
            Q LK  LE+     +  N  +++ +      +         TL+ +       P  +  
Sbjct: 406 LQKLKHWLESPAHKKLGQNLKYDQHIFANH-GIAFAGIA-EDTLLQSYVLESHKPHEMGN 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G   ++             +     +        Y   D  +T ++
Sbjct: 464 LALRH--------LGLSTVSY----ADVVGKGAKQIGFDQVDLETATRYAAEDADITLQL 511

Query: 172 FKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            + L P             E  +  +   +   G  +D A+    +  + ++  +++++ 
Sbjct: 512 HQTLSPQLQGRLDAVYRQIELPVREVLFKMERNGVLIDSAMLGRQSHELGLKLNEIEKQA 571

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
                    +    ++L   LF +  L ++  T +    T + VL       P    +  
Sbjct: 572 FEAAGQP-FNLNSPKQLSEILFDKLQLPVKKKTPSGTPSTDEEVLQELALDYPLPKLLLE 630

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            R   ++      + L + +N   GR+  +     A  TGR +      QN+P  +    
Sbjct: 631 YR-GMAKLKSTYTDKLPQMVNAKTGRVHTSYAQAVA-VTGRLASSDPNLQNIPIRTPEGR 688

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   I   G ++V AD + IE R++A ++G++ 
Sbjct: 689 R-------------------------IREAFITPAGSRIVSADYSQIELRIMAHLSGDEG 723

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAF  GED++  T A  F+VA   V+ +QR   KV+   L Y   A           L
Sbjct: 724 LLKAFAAGEDIHRATAAEVFSVALDAVSSEQRRYAKVINFGLIYGMSA-----YGLAAQL 778

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           N+ T A     +     +   + +    +E        + + G                 
Sbjct: 779 NIETSAAKQYIDLYFARYPGVKRYMDSTREQAKAQGFVETWFGR---------------- 822

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             LW                                          +G      +     
Sbjct: 823 -RLWLPEINGA-----------------------------------NGMRRQAAERAAIN 846

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
           + +  T   L +            VQ    D      +   K    +++ VHDE+V E P
Sbjct: 847 APMQGTAADLIKLAMIA-------VQ----DW-----LETEKLATKLIMQVHDELVLEVP 890

Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +       +  LM +       +PL+    E   +
Sbjct: 891 QGELARVKDKVRELMCNVAE--LKVPLEVGMGEGGNW 925


>gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
 gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1]
          Length = 1027

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 97/707 (13%), Positives = 193/707 (27%), Gaps = 168/707 (23%)

Query: 14   IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--------------------VM 53
            + L             +   A     +        H                        
Sbjct: 438  VALEAVATSIDPMQAELTGVALALGPNDACYIPLGHKQAGDGDGLFAAGLAPDQLGTRDA 497

Query: 54   PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110
               LK  LE+  +  V     F   +L       + +       +++ +         L 
Sbjct: 498  LDALKPVLESAGIAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSHGLD 554

Query: 111  AVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            A+ E+ L  +   + E                         +        Y      V+ 
Sbjct: 555  ALSESNLGHTLHTLTEL-------------TGTGKNKIGLDQVGIDRATAYAAERADVSL 601

Query: 170  EIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             + + L+P            + E+ L  +   +  RG  +D  +   L+        +++
Sbjct: 602  RLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARIE 661

Query: 220  QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
             E+  L    + +    ++L   LF + GL     T+    +T  +VL    +   +  +
Sbjct: 662  AEIRELAGEDI-NIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPK 720

Query: 276  VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                  + S+      + L   ++       T   L A+ TGR S      QN+P  +  
Sbjct: 721  KILEWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTED 780

Query: 336  HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
              +                         +R   +A+ G KLV AD + IE R+L+ +A  
Sbjct: 781  GRK-------------------------IRRAFVATPGHKLVSADYSQIELRLLSEVADV 815

Query: 396  QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                KAF+ G D++  T +  F V    +  + R   K +                    
Sbjct: 816  PALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------------GIIY 861

Query: 456  GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            G++                                  A +            K + ++  
Sbjct: 862  GIS------------------------------AFGLANQLGIPREEAGAYIKRYFERFP 891

Query: 516  RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             +    +E          +G                             GR   Y D+  
Sbjct: 892  GIRAYMDETRDF---CRAHGYVTTL-----------------------FGRKCHYPDIKA 925

Query: 576  NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
            +     +      R             Q  + DI+   M+         K    ++L VH
Sbjct: 926  SNP---SIRAFNERAAINARL------QGSAADIIRRAMVRMEDALAEKKLSAQMLLQVH 976

Query: 630  DEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
            DE++ E P+ +      ++  +M     P+    +PL+ +   +  +
Sbjct: 977  DELIFEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNW 1023


>gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
 gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207]
          Length = 926

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/701 (16%), Positives = 194/701 (27%), Gaps = 155/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + +D ET S   +             ++  +              HD           
Sbjct: 348 DLVAVDTETTSLDYMR----------AKLVGISLSTAPGEACYIPFAHDYMGAPEQLQPE 397

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LK 110
              + LK  LE+     V  N  ++ +VL     + +       T++ +      ++   
Sbjct: 398 FALEKLKPYLEDPAFPKVGQNLKYDMSVLAQH-GISLRGIT-FDTMLESYVLDSVASRHD 455

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               AL         G+E I    K              ++ A    G Y   D  +T  
Sbjct: 456 MDSLALNY------LGEETI----KFADVAGKGAAQLTFNQVALDQAGPYAAEDADITLR 505

Query: 171 IFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + L P               E  L  +   I   G  VD  L    +Q +     +L+
Sbjct: 506 LHQTLWPRVAAEPTLTKVFEEIELPLVPVLSRIERTGALVDDTLLFQQSQELSARLGELE 565

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQ 275
            E   L      +    ++L   LF +  + +   T     +T + VL       P    
Sbjct: 566 TEAWELAGQQ-FNLASPKQLGEILFEKLQIPVLKKTAKGAPSTKEEVLQELALDYPLPKV 624

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   ++      + L   +NS  GR+  +    G + TGR S      QN+P  S 
Sbjct: 625 LLEHR-GLAKLKSTYTDKLPTMINSVTGRIHTSYHQSG-TATGRLSSSDPNLQNIPIRSA 682

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR   +A+ G KLV AD + IE R++A ++ 
Sbjct: 683 EGRR-------------------------VRQAFVAAPGCKLVAADYSQIELRIMAHLSE 717

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   L AF  G+D++  T A  F V   +VT DQR   K +   L Y   A         
Sbjct: 718 DPSLLAAFSAGQDIHRATAAEVFGVENEEVTIDQRRSAKAINFGLIYGMSA-----FGLA 772

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L +N              +   +N+   ++ +  E    +                  
Sbjct: 773 RQLGINRKQAAEYIELYFTRYPGVQNYMNNIRHSAAEQGFVETVF--------------- 817

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                      +R  +P +                R        
Sbjct: 818 --------------------------GRRLYLPEINASNGM----------RRQAAERTA 841

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL-AEGMMNATKAGYDIVLTVHDEIV 633
            N     T    +           E        D+     M                 +V
Sbjct: 842 INAPMQGTAADIIKLAMINVHNWLET------SDLTSKIIM-QVHDE-----------LV 883

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P+++       L  LM S       +PL  +      +
Sbjct: 884 LEVPESEMEEVQKGLNDLMESAAELL--VPLVVDIGVGDNW 922


>gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
 gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301]
          Length = 964

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 221/701 (31%), Gaps = 154/701 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDP-------VMPQVL 57
           D ET                   ++     + + P +       H+         +   L
Sbjct: 382 DTETTDLDP----------RLAQLVGIGCAWGEEPDQLAYIPLGHEEGEQLPLQTVLTAL 431

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +  LE+        N+ F+R +L     +++       T++ +         +L A+ + 
Sbjct: 432 RPILESDRHPKALQNAKFDRLIL-RHQGIELA-GVVFDTMLASYLLNPSLGHSLDALADR 489

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            LKL ++   +                   + K   + A     +YC  DV V + +   
Sbjct: 490 WLKLQTRSYSDL----------------VPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPL 533

Query: 175 LE------PLSSKEQELWY-----LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L+      P      E        +   + DRG  +D      L++ +  E  +L+    
Sbjct: 534 LKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEGAAH 593

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFN 278
           +L      +    ++L   LF + GL+++    T+   +T   VL   +   P    +  
Sbjct: 594 TLAGDR-FNLGSPKQLSELLFEKLGLNVKKSRKTKTGYSTDAAVLEKLQGDHPIIDLILE 652

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +    ++     ++ L   + +DGR+         + TGR S      QN+P  +     
Sbjct: 653 H-CTLAKLKSTYVDALPSLVAADGRIHTDFNQAV-TATGRLSSSNPNLQNIPIRTE---- 706

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                 S  +R   +  EG  L  AD + IE R+LA ++ E   
Sbjct: 707 ---------------------FSRQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVL 745

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+A+  G+D++  T +  F     ++T ++R IGK++   + Y  GA+ F          
Sbjct: 746 LEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIYGMGAQRF-----ARETG 798

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +T       +   + +     + + ++         +  +G       + +        
Sbjct: 799 SSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGR------RRYFD------ 846

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                                             +D     L      S+    +  +R 
Sbjct: 847 ---------------------------------FEDTGLQKLRGSDPESIDLDKIRPSRF 873

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634
                  QL R            +Q  S DI+   M+            ++L VHDE+V 
Sbjct: 874 -----EAQLLRAAANAP------IQGSSADIIKVAMVQLQALLQSYQARMLLQVHDELVL 922

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E P  +  + +  +   M         +PL  E +    + 
Sbjct: 923 ELPPEEWDSLAPQIQQTMEQAVQ--LTVPLAVELHAGHNWM 961


>gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605]
 gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605]
          Length = 986

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/712 (15%), Positives = 206/712 (28%), Gaps = 161/712 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD----------- 50
           +  D ET                   ++     + +    +      H            
Sbjct: 392 VAFDTETTDLNPFR----------AELVGIGICWGEDLDALAYIPLGHKGSEDSIPEQLS 441

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--S 107
              +   L   L +++      N+ ++R +L     + +     I TL+           
Sbjct: 442 LETVLTALAPWLASSNHPKTLQNAKYDRLILLRH-GIALE-GVVIDTLLADYLRDASAKH 499

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L+ + E                    +  +   L  + +            YC  DV V
Sbjct: 500 GLELMAER---------------EFGFQPTSFTDLVGKKQTFADVPLEPASLYCGMDVHV 544

Query: 168 TREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           TR +   L                   Q L  +   +   G  +DV     L++ +    
Sbjct: 545 TRRLALLLRHQLETMGPQLLPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMGSTL 604

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270
            +L+ + ++       +    ++L   LF   GL  +    T+   +T   VL       
Sbjct: 605 QQLESDAKAAAGVD-FNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLGNDH 663

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           P    V ++R+  S+     ++ L + +    GR+         + TGR S      QN+
Sbjct: 664 PVVPLVLDHRV-LSKLKSTYIDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNI 721

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +  EG  L+ AD + IE R+L
Sbjct: 722 PVRTE-------------------------YSRRIRKAFLPQEGWTLLSADYSQIELRIL 756

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
             ++GE+   +A+  G+D++  T      +   +V+ D+R +GK +   + Y  GA   Q
Sbjct: 757 THLSGEKVLQEAYRGGDDVHALTARLL--LDKDEVSPDERRLGKTINFGVIYGMGA---Q 811

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           + A  TG++ +            + +     F    +         +  +G         
Sbjct: 812 RFARETGVSQSE--AKEFLVKYKQRYPKVFAFLELQERLALSRGYVETILG--------- 860

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                             R  P  + +     L+   P      
Sbjct: 861 ----------------------------------RRRPFHFDRNGLGRLLGKDPL----- 881

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------ 623
             ++  + +       Q  R            +Q  S DI+   M+    A         
Sbjct: 882 --EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQDALLRQGLPAQ 933

Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE+V E           ++   M         +PL  E      + 
Sbjct: 934 LLLQVHDELVLEVAPDALETTRDLVVRTMEQAFE--LSVPLVVETGVGANWM 983


>gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002]
 gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002]
          Length = 973

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/700 (16%), Positives = 209/700 (29%), Gaps = 148/700 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGF--DDHPVELWDCVH-------DPVMPQVL 57
           D ET                +V ++     +  D   +      H          + Q L
Sbjct: 385 DTETTGLDP----------REVDLVGIGCCWGRDPGNIAYIPIAHHNGNQLEKTQIFQAL 434

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K  LE      V  N+ F+R +      + +       T++ +          L  +   
Sbjct: 435 KPILETEKYPKVFQNAKFDRAIFA-HQGISLA-GVVFDTMLASYVLHPEMKHNLTDLSLR 492

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                        L     K      L  +          +  EYC  DV  T  + ++L
Sbjct: 493 Y------------LGNIIAKSYKDLGLTKKQ-TIADLEISVAAEYCGLDVYTTYLVCQKL 539

Query: 176 E------PLSSKEQELWY-----LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +      P   K  E        +   + + G  +D      L + +  + T L+ +  +
Sbjct: 540 KVELKDYPDLEKLLEKVETPLEPVLCAMENTGIRIDQDYLQQLAEELGADLTDLEIKAYN 599

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQAIQVFNN 279
                  +    ++L   LF + GL+ +         +T   VL   +   P    +   
Sbjct: 600 -AADERFNLNSPKQLGEILFEKLGLNTKKTRKTKTGYSTNHAVLEKLQGDHPIIDYILEY 658

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++     ++ L   ++       T      + TGR S      QN+P  +      
Sbjct: 659 R-TLAKLKSTYIDALPTLVSPKTDRIHTDFNQTLTSTGRLSSSNPNLQNIPVRTE----- 712

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                S  +R   I  E   LV AD + IE R+L  ++ E   L
Sbjct: 713 --------------------FSQRIRRAFIPKENWVLVAADYSQIELRILTHLSQEPILL 752

Query: 400 KAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           +A++ GED++  T    F+   P  VT  +R IGK++   + Y  GA   Q+ A   G++
Sbjct: 753 QAYQAGEDVHRVTAQMIFDRDSPQAVTAAERRIGKIINFGVIYGMGA---QRFAREAGVS 809

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                     +   E +     +   +++           +           R+    +S
Sbjct: 810 KEEGRA--FIDRYHERYAKVFEYLELVKKQAIAQGYVSTILQR---------RRNFDFIS 858

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
               EL  +  + I                                       D+ +   
Sbjct: 859 NCLIELKGSDPKAI---------------------------------------DLDSLDY 879

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVC 634
             N    QL R            +Q  S DI+   M+   +        ++L VHDE+V 
Sbjct: 880 AYN--DAQLLRAAANAP------IQGSSADIIKVAMIQIHELLKDYQARLLLQVHDELVF 931

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E P  +     S +   M         +PL  + +  K +
Sbjct: 932 EMPPEEWEELGSKIKTTMEQAVP--LSIPLVVDIHCGKNW 969


>gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
 gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601]
          Length = 976

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/712 (15%), Positives = 202/712 (28%), Gaps = 160/712 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------- 50
            + +D ET S   +          D  ++       +    +      H           
Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPDQLS 431

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPS 107
              +   L+  +E+        NS F+R +      LD+       TL+           
Sbjct: 432 IEDVFSKLRNWIEDPKKEKALQNSKFDRQIFFNH-GLDLK-GVTFDTLLADYLLNNQEKH 489

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L  +   L                  K  + +    +NK            YC  DV +
Sbjct: 490 GLSEISFRL---------------FGFKPPSFKETVGKNKDFSFVDIDEASIYCGYDVFL 534

Query: 168 TREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           T +I K  +                 E  L  +   +   G  +D+     L++ +    
Sbjct: 535 TFKIVKIFKESFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTL 594

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270
             ++ ++  L      +    ++L   LF +  L  +    T+   +T   VL       
Sbjct: 595 EDIESKVYEL-ADESFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEH 653

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                +  +R   S+     ++ L   +N   GR+        A+ TGR S      QN+
Sbjct: 654 EIIQHLIKHR-TLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +  +  KL+ AD + IE R+L
Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKNWKLLSADYSQIELRIL 746

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A E+  + AF   +D++  T    F     +++ D+R +GK +   + Y  G K   
Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMGIKK-- 802

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
             A +TG++              E +     F    +             G   E     
Sbjct: 803 -FARSTGVSTPE--AKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFD- 858

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                     K     L+   P      
Sbjct: 859 ------------------------------------------KNGLGRLLGKDPY----- 871

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
             ++    +       Q  R            +Q  S DI+   M+   K          
Sbjct: 872 --EIDLQAARRAGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFTEMNVPAK 923

Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE++ E  PD+ E    ++   M         +PL  +      + 
Sbjct: 924 MLLQVHDELLFEVEPDSLEITTKLVKKTMEDCVK--LNVPLLVDVGIGDNWM 973


>gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101]
          Length = 1020

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 109/721 (15%), Positives = 202/721 (28%), Gaps = 171/721 (23%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHD----------- 50
            + +D ET S                 ++     + + P         H            
Sbjct: 418  VALDTETTSLNPFR----------AELVGVGVAWGEGPADLAYIPIGHRVGSSGETPDLL 467

Query: 51   ---------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLA 100
                       +   L   L +        N+ ++R +L       +P+   +  TL+  
Sbjct: 468  SPPPAQLPLDQVLTALAPWLGSAQHPKALQNAKYDRLILLRH---GLPLEGVVMDTLLAD 524

Query: 101  RSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                      L+ + +                       ++  L  +             
Sbjct: 525  YLRDANAKHGLELLAQR---------------NFGFLPTSYSELVPKGADFSAVPIEQAA 569

Query: 159  EYCKGDVTVTREIFKRLEPLSSK------------EQELWYLDQTINDRGYCVDVALAHT 206
             YC  DV VTR +   L     +            E  L  +   +   G  +D A    
Sbjct: 570  LYCGMDVHVTRRLAPLLRAQLEELGPQLPQLLDRVELPLEPVLALMEATGIRIDTAYLAE 629

Query: 207  LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQR 261
            L+  +     +L+ + ++       +    ++L   LF   GL  +    T+   +T   
Sbjct: 630  LSSELGQTLQRLEADAKAAAGTD-FNLASPKQLGELLFDTLGLDRKKSRKTKTGWSTDAA 688

Query: 262  VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWS 320
            VL   +   P    V  +R   S+     ++ L   M  + GR+         + TGR S
Sbjct: 689  VLEKLEDAHPVVSLVLEHR-TLSKLKSTYVDALPALMEPETGRVHTDFNQAV-TATGRLS 746

Query: 321  GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                  QN+P  +                           S  +R   +   G +L+ AD
Sbjct: 747  SSNPNLQNIPIRTE-------------------------FSRRIRKAFLPEAGWQLISAD 781

Query: 381  LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
             + IE R+LA ++GE+  ++A++ G+D++  T      +   +V+ D+R +GK +   + 
Sbjct: 782  YSQIELRILAHLSGEEVLVQAYQQGDDVHALTARLL--LEKDEVSADERRLGKTINFGVI 839

Query: 441  YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
            Y  GA   Q+ A  TG++          +   + +     F    +         +  +G
Sbjct: 840  YGMGA---QRFARETGVS--QTQAKEFLSKYKQRYPKVFAFLELQERLALSRGYVETILG 894

Query: 501  TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                            +     K+ L +
Sbjct: 895  RRRPFAFD-------------------------------------PSGLGRHLGKDPLEI 917

Query: 561  MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK- 619
             L   R                   Q  R            +Q  S DI+   M+     
Sbjct: 918  DLDIARR-------------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLHHQ 958

Query: 620  -----AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
                     ++L VHDE+V E           L    M         +PL  E      +
Sbjct: 959  LAASGLPARLLLQVHDELVLEAAPEALEAVRTLTRETMERAVE--LSVPLLVETGVGPNW 1016

Query: 674  R 674
             
Sbjct: 1017 M 1017


>gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 933

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 202/700 (28%), Gaps = 151/700 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET S   LT            ++  +F             HD           
Sbjct: 353 KIFAFDTETDSLDVLTTN----------LVGLSFATAPSVAAYIPVGHDYLDAPDQLDRD 402

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   LK  LE+ ++  V  N  +++ V+     +++       T++ +           
Sbjct: 403 DVLAKLKPVLEDANLLKVGQNLKYDQGVMARY-GIELQGIA-FDTMLESYDLDSVAGRHD 460

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + ++ E              L  +    E            ++ A      Y   D  VT
Sbjct: 461 MDSLAERH------------LNHKTITFEEIAGKGKSQLTFNQIALEQATPYAAEDADVT 508

Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
            ++  +L P               +  L  +   +   G  +D  +    +Q + +   +
Sbjct: 509 LQLHLKLWPQLEKEAGLKKVFTDIDMPLVPVLSRMERTGVLIDSNILGKHSQELAIRLDE 568

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+++          +    ++L+  LF +  L +   T     +T + VL+   +   + 
Sbjct: 569 LEKKAHEAAG-EPFNLSSPKQLQAILFEKQKLPVVKKTPGGAPSTNEEVLAELSEQGFEL 627

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +       ++      + L + +N       T      + TGR S      QN+P  +
Sbjct: 628 PTIILEHRGLAKLKSTYTDKLPQMINPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRN 687

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   IA +G K+V AD + IE R++A ++
Sbjct: 688 DEGRR-------------------------IRQAFIAPQGYKIVAADYSQIELRIMAHLS 722

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A        
Sbjct: 723 GDKGLLTAFAAGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFGLIYGMSA-----FGL 777

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              LN+         +   E +     +    ++   E    +   G      +   R  
Sbjct: 778 ARQLNIARGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYVETLDGRRLYLPEIHSRNG 837

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
             R         +A       G A    KR  + +      +   ++ +           
Sbjct: 838 MRR-----KGAERAAINAPMQGTAADIIKRAMISVDAWLLQQKEPLVRM----------- 881

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                      I+Q                    +V  VH E V
Sbjct: 882 ---------------------------IMQ-------------VHDE---LVFEVH-ESV 897

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E           +  LM  +   A  +PLK +    + +
Sbjct: 898 IE------QTVEKVRELMEQSLELA--VPLKVDVGTGENW 929


>gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
 gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394]
          Length = 984

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 199/703 (28%), Gaps = 164/703 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQ 55
            + +D ET S   +             ++  +  F           H          +  
Sbjct: 410 VIGLDTETTSLEPMK----------AQLVGISIAFGAGDAAYIPVAHTFAEQLDWTDIKS 459

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113
            L+  LEN  +  +  N  +++ V      + +        ++ +          L  + 
Sbjct: 460 SLQPFLENPQLGKIGQNMKYDQHVFANH-GIALQGIS-GDAMLASYIVESHLGHGLDELS 517

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E              L       E+      +  P          EY   D      I +
Sbjct: 518 ER------------WLQLPTITYESLCGKGAKQIPFADVPLDKAAEYACQDADFALRIEQ 565

Query: 174 RLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            L      +Q          +  +   +   G  +D       +  +  E  +L+ E  +
Sbjct: 566 HLRTQMDDKQLAMYQELELPVAQVLFAMERNGVFIDSNELAQQSAQLGKELWQLENEAFA 625

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE----TTCQRVLSSNKKLTPQAIQVFN 278
           L      +    ++L+  LF + GL  +    T     +T + VL       P    +  
Sbjct: 626 LAG-KPFNLNSPKQLQDILFNQMGLPTKGIKKTAGGSYSTDESVLEKLADDFPLPKLILQ 684

Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           +R   ++      + L E +    GR+        A  TGR +      QN+P  +    
Sbjct: 685 HR-SLAKLKSTYTDKLPEMILPATGRVHTNYAQAVA-ITGRLASNNPNLQNIPIRTEQGR 742

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR    A EG+ +V AD + IE R++A ++G+  
Sbjct: 743 R-------------------------VRRAFCAPEGQMMVSADYSQIELRIMAHLSGDPT 777

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
              AF+  ED++  T A  F V P  +T +QR   K +                    G+
Sbjct: 778 LQAAFQNNEDVHRRTAAEVFGVPPEHITAEQRRYAKTIN--------------FGLIYGM 823

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    A  +  ++                                 E   K +  +++ V
Sbjct: 824 SSFGLAKALGIDNMS------------------------------AEMFIKRYFARYTGV 853

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +E      +                                 +    GR L   D+  + 
Sbjct: 854 AEYMERTKEQARS--------------------------LGYVETLFGRRLYLPDIHGSA 887

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
                  R                +Q  + D++   M+    A         +V+ VHDE
Sbjct: 888 IRRAAAERAAINA----------PMQGTASDLIKRAMIKVQAALAAEQSSAQLVMQVHDE 937

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V + P+ +  +    L   M+        +PL AE    K +
Sbjct: 938 LVLQVPEDELAHIKAQLPQWMSDVGEGVLAVPLLAEVGAGKNW 980


>gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301]
 gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301]
          Length = 928

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 110/703 (15%), Positives = 201/703 (28%), Gaps = 160/703 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
             +  D ET S   +T            ++  +F  +          HD           
Sbjct: 351 KLMCFDTETTSLDPMT----------AKIVGMSFSVEAGSAAYLPLKHDYFDAPEQLDFV 400

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN  +  V  N  +++ VL     + +       T++ +          +
Sbjct: 401 ETLAKIKPILENAAIKKVGQNFKYDQHVLANH-GIALNGIA-HDTMLESYVFESHKTHGM 458

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            A+ E           G + I+     E       +    ++    +  EY   D  +T 
Sbjct: 459 DALAERH--------LGIQTISF----EEVAGKGAKQVTFNQVTVEVASEYAAEDADITL 506

Query: 170 EIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + + P               E     +  TI   G  +D  + +  +  +  +   L
Sbjct: 507 QLHQAMYPQISTDAKLDFIYSQIEMPSSQILFTIERNGVLIDRDMLNIQSNEIGAKLVAL 566

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAI 274
           + +   L      +    ++L+  LF + G+     T +    T + VL       P   
Sbjct: 567 ENQAYELAGQP-FNLGSPKQLQEILFDKLGIKPTKKTPSGAPSTDEDVLQELALDHPLPK 625

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +   R   ++      + L + +N+  GR+  +     A  TGR +      QN+P  S
Sbjct: 626 VLLEYR-GLAKLKSTYTDKLPKMINAQTGRVHTSYNQAVA-ITGRLASSDPNLQNIPVRS 683

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   IA +G  +V AD + IE R++A ++
Sbjct: 684 AEGRR-------------------------IREAFIAPKGSHIVSADYSQIELRIMAHLS 718

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L AF   ED++  T A  F V    V  +QR   KV+   L Y   A        
Sbjct: 719 KDEGMLAAFANNEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIYGMSA-----FGL 773

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              LN+   A           +     + +  +E   +    + + G             
Sbjct: 774 AQNLNIERGAAASYIERYFARYPGVREYMQNTREIAKQKGYVETYFGR------------ 821

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                 LW                                      +  P+G      + 
Sbjct: 822 -----RLW-----------------------------------VPEINSPNGTRRAGAER 841

Query: 574 GNNRSYLNTTTRQLTREYTYG--GKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
               + +  T   L +         L    +Q          M         +VL     
Sbjct: 842 AAINAPMQGTAADLIKLAMIAVDKWLRHEKLQ------TKLIM-QVHDE---LVL----- 886

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              E PD +       L  LM +       +PL AE      +
Sbjct: 887 ---EVPDNELELVKQKLPELMQNVAK--LDVPLLAEVGVGSNW 924


>gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110]
 gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110]
          Length = 583

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/681 (15%), Positives = 207/681 (30%), Gaps = 139/681 (20%)

Query: 26  EDVCVILFAFGFDDHPV--ELWDCVHDP-------VMPQVLKEALENTDVTIVAHNSYFE 76
               ++     + + P         H          +   L+  LE+ +   V  N+ F+
Sbjct: 7   RQADLVGIGCCWGNQPTDIAYIPIGHKQGNQLKKQKVLDSLRTILESKNYPKVFQNTKFD 66

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFC 134
           R + K    +++       T++ +          L  + E              L     
Sbjct: 67  RLIFK-HQGINLD-GVVFDTMLASYVLHPEKSHKLSELCEQY------------LEGITS 112

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQ 183
           +      +  +             EYC  D   T  + + L+                EQ
Sbjct: 113 QNYKELGIGKKQ-TIADLEIDKVAEYCGMDAYATFLLVEPLKNELKQVSSLEKLLLEVEQ 171

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +   + D G  +D      L++ ++ +   L+++   +  G   +    ++L   L
Sbjct: 172 PLEAVLSIMEDTGILIDTEYLGELSKQLEKDLLILEEKAYEVAGGK-FNLGSPKQLGEIL 230

Query: 244 FLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           F +  L+ +    T+   +T    L   K   P    +   R   S+     ++ L E +
Sbjct: 231 FEKLELNRKKSRKTKTGYSTDHATLDKLKGDHPIIDYILEYR-TLSKLKSTYIDALPELV 289

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           ++  +   T      + TGR S      QN+P  +                         
Sbjct: 290 DTKTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTE------------------------ 325

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
             S  +R   I  +   LV AD + IE R+LA ++ E   L A++  ED++  T    F 
Sbjct: 326 -FSRQIRQAFIPQKDWLLVSADYSQIELRILAHLSQEPVLLNAYQNTEDVHTVTAKLLF- 383

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               ++T  +R +GK +   + Y  G++ F + A      +         N   + +   
Sbjct: 384 -EKEKITSQERNLGKTINFGVIYGMGSQRFAREA-----GVTAAEGKEFINKYRQRYAKV 437

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
             +   M++    +      +G       + +                 +     + +  
Sbjct: 438 FEYLESMKKEAIANGYVTTILGR------RRYFNFFD---------DNLYRFRGHDPQT- 481

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                             +  N+  +N    QL R         
Sbjct: 482 ----------------------------------IDLNQLNINYNDSQLLRAAANAP--- 504

Query: 599 ENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTS 653
              +Q  S DI+   M+   +       +++L VHDE+V E P  +       +   M +
Sbjct: 505 ---IQGSSADIIKIAMVKIQEILNHCQANLLLQVHDELVFEIPVKEWEKLENKIKETMEN 561

Query: 654 NPSWAKGLPLKAEGYESKRYR 674
                  +PL  E +  K + 
Sbjct: 562 AVK--LTIPLVVEIHAGKNWM 580


>gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
 gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1]
          Length = 928

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/710 (15%), Positives = 196/710 (27%), Gaps = 169/710 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------- 52
           + +D ET    D+  C  C       ++  +     +        H              
Sbjct: 346 VAVDTET----DMLDCVSCA------LVGVSLAVGPNAACYVPVGHGGKDMFAEKPDQLP 395

Query: 53  ---MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
              +   LK  LE+  V  +  N  ++ TVL+      I I  +  T+V++       +L
Sbjct: 396 LALVLAKLKPLLEDDSVLKIGQNLKYDITVLRRH---GIEIAPYDDTIVMSFDLDAGQSL 452

Query: 110 KAVGEALKLSSQ-KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                   +    K       I+     +                     EY   D  VT
Sbjct: 453 AG----HGMDEAAKTHLNHICISF----KDVCGTGKSQISFAEVPLDKATEYAAEDADVT 504

Query: 169 REIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             ++K  +   +           ++ L  +   +   G  VD      L+         L
Sbjct: 505 LRLWKLFKTRIANEGATRVYELVDRPLVSVIAKMEHEGIKVDREALSRLSAEFTAGIAAL 564

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKLTPQAI 274
           + E+  L      +    ++L   LF + G            +T   +L   K    +  
Sbjct: 565 ETEIHGLAGQP-FAIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQLKVQGAEIA 623

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
               +  + S+      + L   +N D     T   L  ++TGR S      QN+P  + 
Sbjct: 624 GKVLDWRQLSKLKSTYTDALQAQINRDTSRVHTSYSLSGAQTGRLSSTDPNLQNIPIRTE 683

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   +A  G  ++ AD + IE R+ A MA 
Sbjct: 684 VGR-------------------------QIRHAFVAEPGNVILAADYSQIELRLAAHMAD 718

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                +AF  GED++  T  + F     +V +D R   K +  A+ Y        +    
Sbjct: 719 VPALKEAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYG-----ISRWGLA 769

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++                                           + +   + ++ 
Sbjct: 770 GRLEISA---------------------------------------DEAQDMISRYYERF 790

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             +S    +  +                                      GR   +  + 
Sbjct: 791 PGISLYITDTIEKARS--------------------------KGYTETLFGRKTWFPRIK 824

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-------DIVLT 627
            +  +         R            +Q  S DI+   M     A          ++L 
Sbjct: 825 ASVQHERQ---GAERAAINAP------IQGTSADIIKRAMARMGPALAAEGLHDVKMLLQ 875

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRYR 674
           VHDE+V E P+ D   A +++  +M     P     +PL  E      + 
Sbjct: 876 VHDELVFELPEGDVEQASAVIRRVMEGAAEPIVKLSVPLGVEIGHGPSWG 925


>gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
 gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301]
          Length = 976

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/712 (15%), Positives = 203/712 (28%), Gaps = 160/712 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------- 50
            + +D ET S   +          D  ++       +    +      H           
Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQIKKETPNQLS 431

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPS 107
              +   L+  +E+        NS F+R +      LD+       TL+           
Sbjct: 432 IEDVFSKLRTWIEDPKKEKALQNSKFDRQIFFNH-GLDLK-GVTFDTLLADYLLNNQEKH 489

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L  +   L                  K  + +    +NK            YC  DV +
Sbjct: 490 GLSEISFRL---------------FGFKPPSFKETVGKNKDFSFVDINEASIYCGYDVFL 534

Query: 168 TREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           T +I K  +                 E  L  +   +   G  +D+     L++ +    
Sbjct: 535 TFKIVKIFKERFSKEKDELIKLFKEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTL 594

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270
             ++ ++  L      +    ++L   LF +  L  +    T+   +T   VL       
Sbjct: 595 EDIENKVFEL-ADENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDALVLERLVDEH 653

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                +  +R   S+     ++ L   +N   GR+        A+ TGR S      QN+
Sbjct: 654 EIIQHLIKHR-TISKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +  +  KL+ AD + IE R+L
Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKNWKLLSADYSQIELRIL 746

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A E+  + AF   +D++  T    F     +++ D+R +GK +   + Y  G K   
Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMGIKK-- 802

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
             A +TG++              E +     F    +             G   E     
Sbjct: 803 -FARSTGVSTPE--AKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK 859

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                  +     K+   + L S R   
Sbjct: 860 -------------------------------------NGLGRLIGKDPYEIDLQSARR-- 880

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
                           Q  R            +Q  S DI+   M+   K          
Sbjct: 881 -----------AGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNFPAK 923

Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE++ E  PD+ E    ++   M +       +PL  +      + 
Sbjct: 924 MLLQVHDELLFEVEPDSLEITTKLVKKTMENCVK--LNVPLLVDIGIGDNWM 973


>gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01]
 gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01]
          Length = 960

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/697 (14%), Positives = 193/697 (27%), Gaps = 148/697 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET S            A+   ++  +F             H             +
Sbjct: 381 IAFDSETTS----------IDAQQAQLVGLSFAVKAGEAAYIPLAHSYMGVPQQLDRDAV 430

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
              LK  LE+     V  ++ ++  VL       +       T++ +      +      
Sbjct: 431 LNALKPILEDPAKAKVGQHAKYDINVLANASTPIMVQGVAFDTMLESYVLDSTAT----- 485

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     +   K L     + E       +     + A    G Y   D  VT  + +
Sbjct: 486 ---RHDMDSLAL-KYLNHSTIRFEDIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQ 541

Query: 174 RLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L                 E  L  +   I   G  VD  L    +  +  +  +L+++ 
Sbjct: 542 ELWGRLEAIPSLAKVLRDIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKLVELERKA 601

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L   L+ + G  +   T     +T + VL+   +   +  +V  
Sbjct: 602 FEIAG-EEFNLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDYELPKVLM 660

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                S+      + L E +N   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 661 QYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAVAA-TGRLSSSDPNLQNIPIRTAEGR 719

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   +A +G KL+ AD + IE R++A +A ++ 
Sbjct: 720 R-------------------------IRQAFVAPKGYKLMAADYSQIELRIMAHLAKDEG 754

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF    D++  T A  F V   QVT DQR   K +   L Y   A           +
Sbjct: 755 LLDAFRYDLDVHKATAAEVFGVPLDQVTSDQRRKAKAINFGLIYGMSA-----FGLAKQI 809

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           ++         +     +     +    +    E    +   G            ++  +
Sbjct: 810 DVERKEAQAYIDRYFARYPGVLTYMESTRAQAAEQGYVETVYGR--RLYLPEIHAQNQAM 867

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +      +A       G A    KR  + +    +D                       
Sbjct: 868 RK---GAERAAINAPMQGTAADIIKRAMIAVDGWLQDSGID------------------- 905

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                                       +R I     +        +VL        E  
Sbjct: 906 ----------------------------ARII-----LQVHDE---LVL--------EVR 921

Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +       + L  LM+        +P+  E      +
Sbjct: 922 EELINEVSAKLKSLMSGAAD--LDVPMLVEVGVGANW 956


>gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica]
          Length = 929

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/695 (15%), Positives = 204/695 (29%), Gaps = 147/695 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   LT            ++  +F             HD            + 
Sbjct: 352 AFDTETDSLDTLT----------ANLVGMSFAITAGDAAYLPLGHDYLGAPEQLDRDAVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE++++  +  N  F+  VL     +++    +  T++ +      + +     
Sbjct: 402 AALKPLLEDSNLLKIGQNIKFDCGVLVRY-GIELQGIAY-DTMLESYVLNSVAGMG---- 455

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     + E   L  +    E            ++        Y   D  VT ++ + 
Sbjct: 456 --RHDMDSLAERH-LNYKTTTFEEIAGKGKNQLTFNQVPVEQAAMYAAEDADVTLQLHQV 512

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P               E  L  +   +   G  ++  +    ++ + V   +L++E  
Sbjct: 513 IWPQLEKVPALEKVFLETEMPLIMVLSRMERAGVLINSDILAEHSKEIAVRLDELEKEAH 572

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L    V +    ++L+T LF +  L +   T     +T + VL            +  +
Sbjct: 573 ELAG-EVFNLASPKQLQTILFEKLNLPVVKKTPGGAPSTNEEVLEELVDHHELPKVILEH 631

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L + ++   +   T      + TGR S      QN+P  +      
Sbjct: 632 R-GLAKLKSTYTDKLPQMVHPLTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRR- 689

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IASEG +++ AD + IE R++A ++ +Q  L
Sbjct: 690 ------------------------IRQAFIASEGYRIMAADYSQIELRIMAHLSQDQGLL 725

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF  G+D++  T A  F+V   QVT +QR   K +   L Y   A        +  L +
Sbjct: 726 KAFAEGQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFGLIYGMSA-----FGLSRQLGI 780

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    +   E +     +    +E   E    +   G          R    R   
Sbjct: 781 PRGEAQRYMDLYFERYPGVLAYMERTREQAEEQGYVETLAGRRLYLPDIKSRNGTRR--- 837

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A    K+  + +      +                        
Sbjct: 838 --KAAEREAINAPMQGTAADIIKKAMIAVDDWIISE------------------------ 871

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                           K    I+Q                    +V  VH        ++
Sbjct: 872 --------------APK-VRMIMQ-------------VHDE---LVFEVH--------ES 892

Query: 640 DEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  N    +  LM  +      +PL+ +      +
Sbjct: 893 ELENTEQKIRELMEKSV--VLDVPLQVDVGIGDNW 925


>gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
 gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
          Length = 923

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 349 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 941

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/695 (13%), Positives = 196/695 (28%), Gaps = 149/695 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L ID ET S   +          +  ++  +F   ++         +      +    
Sbjct: 369 KILSIDTETTSAEPM----------EAELVGMSFSDTENQAYYVPVPAEREEALKIVNEF 418

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN     V  N  ++  VL+    +++       T++            +  + E 
Sbjct: 419 RPLYENETSMKVGQNIKYDILVLQNY-GMEVK-GELFDTMIAHYVLQPELRHNMDYLAEI 476

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K           +Y   D  VT ++   L
Sbjct: 477 YLH--YQTIHIDELIG---------PRGKNQKNMRDLPPEEVYKYACEDADVTLKLKNVL 525

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   +   G  +D       ++   V   ++++E+  L
Sbjct: 526 EEELKKQGVEHLFYEIEMPLVRVLANLESNGVRIDTEALKQTSEHFTVRLQEIEKEIYEL 585

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +  +   T+T    T + VL S +       ++   R
Sbjct: 586 -AEETFNIASPKQVGEILFDKLKITDKAKKTKTGQYVTSEEVLESLRNKHEIIGKILEYR 644

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L   +N   GR+  +      + TGR S      QN+P      +E 
Sbjct: 645 -GLKKLLGTYIDALPLLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE- 701

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  +G +   AD + IE R++A ++ ++  +
Sbjct: 702 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMI 737

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +G D++  T A+ + V    VT D R   K     + Y               +N+
Sbjct: 738 DAFLSGYDIHAATAAKIYKVDIKDVTSDMRRKAKTANFGIIYGISI-----FGLAERMNV 792

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +     +     +   E    +       +R       +++ V  
Sbjct: 793 DRKEAKELIDGYFETYPQVREYMDKSIQIAREQGYVETIFHR--KRFLPDINSRNATVRG 850

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                                          
Sbjct: 851 Y---AERNAINAPIQGSAADII-------------------------------------- 869

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 ++     Y    + N+                      ++L VHDE+    P+ 
Sbjct: 870 ------KVAMARIYKRFQSNNL-------------------KAKMILQVHDELNFSVPEA 904

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +    M     +   +PL+A+    K +
Sbjct: 905 EKEFVQQIVIEEMERA--YRMHVPLRADCGWGKNW 937


>gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147]
          Length = 923

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/699 (14%), Positives = 189/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 349 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 399 AKLKPWLEDASRKKLGQHLKYDAQVLVNH-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLDKASEYAAEDADITLQLHHA 506

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +     +L+QE  
Sbjct: 507 LYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAY 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 567 VLAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N +     T      + TGR +      QN+P  +      
Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA+ G K+V AD + IE R++A ++ ++  L
Sbjct: 684 ------------------------IREAFIAAPGCKIVSADYSQIELRIMAHISEDESLL 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGR---------RLWLPEING 825

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERG-------------------- 865

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                         +  ++             +VL        E
Sbjct: 866 ----------------------------GFAARMIM----QVHDE---LVL--------E 882

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 883 VPENELSVVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
 gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374]
          Length = 946

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 215/702 (30%), Gaps = 165/702 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-------VHDPVMPQ 55
            +  D ET   ID+ K            + F+  +                  ++  M  
Sbjct: 377 QVAFDVETT-DIDVMKAVP---------VGFSLSWKAGEAWYVPLVAGGKTVSNEKAMKA 426

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112
           V+K+ LEN  + ++  N  ++  V+     + I  +    T+V A           +  +
Sbjct: 427 VVKKHLENPALGVIGQNLKYDYKVMARW-GVRIA-NPVFDTMVAAWLLDSASGIYNMDKL 484

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            +           G   I         + +  +             +Y   D  VT  ++
Sbjct: 485 ADKY--------LGYVTITY-------DQVVPKGALFSDVPLDKAVQYAAEDADVTWRLY 529

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +   P+             E  L  +   +   G  +DV       + +D    K+ +E+
Sbjct: 530 ETFAPMLAERKMTSLMDDLEMPLLRVLADMELEGVRLDVDRLIMFGEEIDGRVEKITREI 589

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQVFNN 279
             L      +    ++L+T LF E GL +   T    +T    L     L P    + + 
Sbjct: 590 YELCGH-EFNINSPKQLQTVLFGERGLPVGRKTASGPSTAVETLEKLVGLDPVPALILDY 648

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    +     ++ L E ++ +     T      + TGR +      QN+P  +      
Sbjct: 649 R-GLVKLKNTYIDALPEQVDVNTGRVHTTFIQTGTATGRLASRNPNLQNIPIRNDDGRR- 706

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +RS  +   G   + AD A IE  VLA + G++   
Sbjct: 707 ------------------------IRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLR 742

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G+D++  T +  FNV P  VT DQR I K +   +                G++ 
Sbjct: 743 EAFLAGQDVHRHTASLIFNVKPEDVTPDQRRIAKTINFGVM--------------YGMST 788

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              ++ +  + +                                     ++ +++  V  
Sbjct: 789 FRLSNELAISHSQ------------------------------AAEFIDSYFKRYHGVKT 818

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             +E  +  E+T                            +    G      ++ ++   
Sbjct: 819 FVDETRKKAEET--------------------------GFVSTMFGHERHVPEIRSSNRM 852

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
             +   +          +   I+Q  + DI+   M+  +++         ++L VHDE++
Sbjct: 853 EKSGAER---------VVVNTIIQGTAADIMKLAMLRISRSLKDSGINARLLLQVHDELI 903

Query: 634 CETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
            E     E   S+L    M         +PL++       + 
Sbjct: 904 FEVASGQEEKLSVLVKDAMEKAVK--LSVPLRSSVETGASWG 943


>gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786]
          Length = 923

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/699 (14%), Positives = 189/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 349 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 399 AKLKPWLEDASRKKLGQHLKYDAQVLVNH-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLDKASEYAAEDADITLQLHHA 506

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +     +L+QE  
Sbjct: 507 LYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAY 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 567 VLAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N +     T      + TGR +      QN+P  +      
Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA+ G K+V AD + IE R++A ++ ++  L
Sbjct: 684 ------------------------IREAFIAAPGCKIVSADYSQIELRIMAHISEDESLL 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGR---------RLWLPEING 825

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERG-------------------- 865

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                         +  ++             +VL        E
Sbjct: 866 ----------------------------GFAARMIM----QVHDE---LVL--------E 882

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 883 VPENELSVVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 896

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/697 (15%), Positives = 195/697 (27%), Gaps = 153/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S           Y E   V+  +F  +          HD            + 
Sbjct: 321 AFDTETTSLN---------YME-AKVVGVSFAIEAGKAAYVPLAHDYLGAPEQLDRDAVL 370

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             +K  LE+ +   V  N  ++ +VL     + +    +  T++ +      +       
Sbjct: 371 AQMKPLLEDPNQAKVGQNLKYDASVLANH-GIALKGIDY-DTMLESYVLDSTAT------ 422

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +     +   K L       E       +    ++      G Y   D  +T  + + 
Sbjct: 423 --RHDMDSLAL-KYLGQNTIHFEDIAGKGAKQLTFNQVKVEEAGPYAAEDADITLRLHQA 479

Query: 175 LEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  L  +   I  +G  +   + H  +  + +   +L     
Sbjct: 480 LWPKLEELSSLLPVFRDIELPLVPVLSKIERQGALLSCEMLHQQSTELGLRLEELKSAAY 539

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L   LF +  L +   T     +T + VL       P    +   
Sbjct: 540 ELAGQ-EFNLGSPKQLGEILFEKLELPIIKKTPKGAPSTAEEVLVELALDYPLPKLLLEY 598

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N   GR+  +     A+ TGR S      QN+P  +     
Sbjct: 599 R-SLSKLKSTYTDKLPGMVNPQTGRVHTSYHQAVAA-TGRLSSSDPNLQNIPIRTEEGRR 656

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA +G ++V AD + IE R++A ++ +   
Sbjct: 657 -------------------------IRQAFIAPQGFRIVAADYSQIELRIMAHLSDDPSL 691

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF+ G+D++  T A  F V+  +V+ DQR   K +   L Y   A           L+
Sbjct: 692 LTAFKEGQDVHRATAAEVFEVSLDEVSGDQRRKAKAINFGLIYGMSA-----FGLAKQLH 746

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           L         +   E +     +    +    E    +   G      +   R K     
Sbjct: 747 LGRHEAQEYIDRYFERYPGVAQYMDRTRAIAKEQGFVETLFGRRLYLPEINARNKMR--- 803

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +        G A    KR                                   
Sbjct: 804 --VQAAERTAINAPMQGSAADIIKR----------------------------------- 826

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVCETP 637
            + +  + L +                        M+         +VL        E  
Sbjct: 827 AMLSVDQWLEQGDANAR------------------MIMQVHDE---LVL--------EVA 857

Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + +    S  +  LM+     A  +PL  E      +
Sbjct: 858 NDEVDAVSNQVCRLMSGAAELA--VPLLVEAGVGDNW 892


>gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102]
 gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102]
          Length = 981

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/712 (16%), Positives = 210/712 (29%), Gaps = 161/712 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD----------- 50
           + +D ET                   ++     + +    +      H+           
Sbjct: 387 VALDTETTDLNPFK----------AELVGIGVCWGEELDALAYIPLGHNGSADSQPVQLP 436

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--S 107
              +   L   L + D      N+ F+R +L     L +     I TL+           
Sbjct: 437 LETVVTALAPWLGSEDHPKALQNAKFDRLILMRH-GLALD-GVVIDTLLADYLRDAAAKH 494

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L+ + E                    +   +  L  + +           +YC  DV V
Sbjct: 495 GLELMAER---------------EFGFQPTAYSDLVGKKQTFADVPLEAASQYCAMDVHV 539

Query: 168 TREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           TR +   L                  EQ L  +   +   G  +DV     L+  +    
Sbjct: 540 TRRLALLLRNQLAAMGAQVLTLLEQVEQPLEPVLAEMEATGIRIDVPYLQELSTEMGTTL 599

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLT 270
            +L+ E +        +    ++L   LF   GL  +         +T   VL       
Sbjct: 600 ERLETEAKEAAGVD-FNLASPKQLGELLFDTLGLDRKKSRRTKTGYSTDATVLEKLGDDH 658

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           P    V  +R+  S+     ++ L + +    GR+         + TGR S      QN+
Sbjct: 659 PVVPLVLEHRV-LSKLKSTYIDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNI 716

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +   G  L+ AD + IE R+L
Sbjct: 717 PVRTE-------------------------YSRRIRKAFLPQAGWTLLSADYSQIELRIL 751

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
             ++GE+   +A+ +G+D++  T      +   +V+ D+R +GK +   + Y  GA   Q
Sbjct: 752 THLSGEEVLQEAYRSGDDVHALTARLL--LDKDEVSADERRLGKTINFGVIYGMGA---Q 806

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           + A  TG++ +        +   + +     F    +         +  +G         
Sbjct: 807 RFARETGVSQSE--AKDFLSKYKQRYPKVFAFLELQERLALSRGYVETILG--------- 855

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                             R  P  + +     L+   P      
Sbjct: 856 ----------------------------------RRRPFHFDRNGLGRLLGKEPL----- 876

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
             ++  + +       Q  R            +Q  S DI+   M+    A         
Sbjct: 877 --EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAALTSQGLPAR 928

Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE+V E  PD  E    M+   M +       +PL AE      + 
Sbjct: 929 LLLQVHDELVLEVEPDALETTRDMVVRTMENAVK--LTVPLVAETGVGANWM 978


>gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109]
 gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109]
          Length = 986

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 109/712 (15%), Positives = 206/712 (28%), Gaps = 161/712 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHD----------- 50
           +  D ET                   ++     + +    +      H            
Sbjct: 392 VAFDTETTDLNPFR----------AELVGIGICWGETLDALAYIPLGHKGNEDSSPEQLP 441

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--S 107
              +   L   L +++      N+ ++R +L     + +     I TL+           
Sbjct: 442 LETVLTALAPWLASSNHPKTLQNAKYDRLILLRH-GVALE-GVVIDTLLADYLRDAAAKH 499

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L+ + E                    +      L  + +            YC  DV V
Sbjct: 500 GLELMAER---------------EFGFQPTAFTDLVGKKQTFADVPLEPASLYCGMDVHV 544

Query: 168 TREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           TR +   L                   Q L  +   +   G  +DV     L++ +    
Sbjct: 545 TRRLALLLRHQLEAMGPQLMPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMGSTL 604

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270
            +L+ + ++       +    ++L   LF   GL  +    T+   +T   VL       
Sbjct: 605 QQLESDAKAAAGVD-FNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLGNDH 663

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           P    V  +R+  S+     ++ L + +    GR+         + TGR S      QN+
Sbjct: 664 PVVPLVLEHRV-LSKLKSTYIDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNI 721

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +  EG  L+ AD + IE R+L
Sbjct: 722 PVRTE-------------------------YSRRIRKAFLPQEGWTLLSADYSQIELRIL 756

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
             ++GE+   +A+ +G+D++  T      +   +V+ D+R +GK +   + Y  GA   Q
Sbjct: 757 THLSGEEVLQEAYRSGDDVHALTARLL--LDKNEVSPDERRLGKTINFGVIYGMGA---Q 811

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           + A  TG++ +            + +     F    +         +  +G         
Sbjct: 812 RFARETGVSQSE--AKEFLARYKQRYPKVFAFLELQERLALSRGYVETILG--------- 860

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                             R  P  + +     L+   P      
Sbjct: 861 ----------------------------------RRRPFHFDRNGLGRLLGKAPL----- 881

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
             ++  N +       Q  R            +Q  S DI+   M+    A         
Sbjct: 882 --EIDLNVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQDALQRQGLPAQ 933

Query: 624 IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE+V E           ++   M      A  +PL  E      + 
Sbjct: 934 LLLQVHDELVLEVAPNALDATRELVVQTMEQAV--ALSVPLVVETGVGANWM 983


>gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305]
 gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243]
 gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305]
          Length = 923

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 349 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
 gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1]
          Length = 1025

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/710 (14%), Positives = 197/710 (27%), Gaps = 168/710 (23%)

Query: 11   RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------------- 51
               + L             +I  A     +        H                     
Sbjct: 433  TGIVALEAAATSIDPMQAELIGLALALGPNDACYIPLPHKQSGDGDGLFAAGLAPDQIGP 492

Query: 52   -VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PS 107
                  LK  LE+  V  V     F   +L       + +       +++ +        
Sbjct: 493  RDALDALKPILESAGVAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSH 549

Query: 108  ALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            AL A+ E+ L  +   + E                         +        Y      
Sbjct: 550  ALDALSESNLGHTLHTLTEL-------------TGTGKNKIGFDQVPVDRATAYAAERAD 596

Query: 167  VTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            V+  + + L+P            + E+ L  +   +  RG  +D  +   L+        
Sbjct: 597  VSLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAA 656

Query: 217  KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272
            +++ E+  L    + +    ++L   LF + GL     T+    +T  +VL    +   +
Sbjct: 657  RIEAEIRELAGEDI-NIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHE 715

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +   +  + S+      + L   ++       T   L A+ TGR S      QN+P  
Sbjct: 716  FPRKILDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVR 775

Query: 333  SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
            +    +                         +R   +A+ G KLV AD + IE R+L+ +
Sbjct: 776  TEDGRK-------------------------IRRAFVATPGNKLVSADYSQIELRLLSEV 810

Query: 393  AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
            A      KAF+ G D++  T +  F V    +  + R   K +                 
Sbjct: 811  ADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------------G 856

Query: 453  STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               G++    A+ +                                         K + +
Sbjct: 857  IIYGISAFGLANQLSI------------------------------PREEAGAYIKRYFE 886

Query: 513  KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            +   +    +E          +G                             GR   Y D
Sbjct: 887  RFPGIRAYMDETRDFCRT---HGYVTTL-----------------------FGRKCHYPD 920

Query: 573  VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL 626
            +  +     +      R             Q  + DI+   M+         K    ++L
Sbjct: 921  IKASNP---SIRAFNERAAINARL------QGSAADIIRRAMVRMEDALAEKKLSAQMLL 971

Query: 627  TVHDEIVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             VHDE++ E P+ +      ++  +M     P+    +PL+ +   +  +
Sbjct: 972  QVHDELIFEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNW 1021


>gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
 gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1]
          Length = 898

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/703 (15%), Positives = 205/703 (29%), Gaps = 163/703 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMP----Q 55
             + +D ET S              +  ++  +   D+         H     +P    +
Sbjct: 325 KKIALDLETTSLDPF----------EGKIVGISIAVDEGKAFYIPIAHVGAKNIPIESVK 374

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112
                L N+  T+  HN  F+   +     ++  I     +++ A           L  +
Sbjct: 375 KFLRDLFNSGKTVGGHNIKFDLKFISR-LGIEPQIPS-FDSMIEAYLLNPNEKKFNLDEL 432

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              LKL   KM   ++L+                            +Y   D  ++  I 
Sbjct: 433 S--LKLLGHKMISYEDLVKDTIPLFAG--------DFSYIPVDTAVKYSCEDADMSLRIH 482

Query: 173 KRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             L P              E  +  +   +   G   D+   + L+Q +D +   L   +
Sbjct: 483 NLLHPLIYSNEMNELYEKIELPMILVLANLELNGVYFDIQYLNNLSQEMDKKLLALSNRI 542

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278
             +T     +    ++L   LF +  L     T     +T   VL         A  +  
Sbjct: 543 FEITG-EAFNLNSPKQLGYILFEKLKLPSVKSTSTGAYSTDVEVLEYLANEYEIAKLILE 601

Query: 279 NRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            R +  +     ++ +   +N +  R+  +    G + TGR S      QNLP  S   +
Sbjct: 602 YR-KIQKLKSTYVDAIPNMVNKNTKRVHASFNQTG-TATGRLSSSDPNLQNLPGRSDEGK 659

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396
           E                         +R  V    +G  ++ AD + IE RVLA +  + 
Sbjct: 660 E-------------------------IRMAVKPQKDGWYILGADYSQIELRVLAHITEDP 694

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF+  +D+++ T  + F V+   +T++ R I                    A   G
Sbjct: 695 NLINAFKENKDIHLETAKKLFGVSEEFITENMRRI--------------GKMVNFAIVYG 740

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    A                                        +++ +A+   +  
Sbjct: 741 VSPYGLAKR------------------------------TGLDVKDTKKMIEAYLDYYKN 770

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E    + +  ++                          N  +    GR      + + 
Sbjct: 771 VQEYMANIKEFAKK--------------------------NGYVRTMFGRKRDIPQINSK 804

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
                    +  R            +Q  + DI+   M+         K    ++L VHD
Sbjct: 805 DQ---NIRAEGERIAINTP------IQGSAADIMKIAMIRIYERLKDEKLQSMMILQVHD 855

Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
           E+V E P+ +      L    M +       +PL  + Y  K 
Sbjct: 856 ELVFEVPENEVEYVKKLVKEEMENAVK--LRVPLLVDIYVEKY 896


>gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
 gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312]
          Length = 976

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/712 (15%), Positives = 202/712 (28%), Gaps = 160/712 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------- 50
            + +D ET S   +          D  ++       +    +      H           
Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEETDDLFYIPLGHQTKKETTNQLS 431

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPS 107
              +   ++  +E+        NS F+R +      LD+       TL+           
Sbjct: 432 IEEVFSKIRTWIEDPKKEKALQNSKFDRQIFFNH-GLDLK-GVTFDTLLADYLLNNQEKH 489

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L  +   L                  K  + +    +NK            YC  DV +
Sbjct: 490 GLSEISFRL---------------FGFKPPSFKETVGKNKDFSFVDIDEASVYCGYDVFL 534

Query: 168 TREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           T +I K  +                 E  L  +   +   G  +D+     L++ +    
Sbjct: 535 TFKIVKIFKERFSMEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTL 594

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270
             ++ ++  L      +    ++L   LF +  L  +    T+   +T   VL       
Sbjct: 595 EDIESKVYEL-AEGNFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEH 653

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                +  +R   S+     ++ L   +N   GR+        A+ TGR S      QN+
Sbjct: 654 EIIQYLIKHR-TLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +  +  KL+ AD + IE R+L
Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKNWKLLSADYSQIELRIL 746

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A E+  + AF   +D++  T    F     +++ D+R +GK +   + Y  G K   
Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMGIKK-- 802

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
             A +TG++              E +     F    +             G   E     
Sbjct: 803 -FARSTGVSTPE--AKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK 859

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                  +     K+   + L S R   
Sbjct: 860 -------------------------------------NGLGRLIGKDPYEIDLQSARR-- 880

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
                           Q  R            +Q  S DI+   M+   K          
Sbjct: 881 -----------AGMEAQSLRAAANAP------IQGSSADIIKIAMVQINKKFIEMNVPAK 923

Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE++ E  PD+ E    ++   M         +PL  +      + 
Sbjct: 924 MLLQVHDELLFEVEPDSLEITTKLVKKTMEDCVK--LNVPLLVDIGIGDNWM 973


>gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307]
 gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307]
          Length = 986

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/708 (15%), Positives = 211/708 (29%), Gaps = 157/708 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDP--------VM 53
           + ID ET                   ++   F +   D+ +      H           +
Sbjct: 396 VAIDTETTDLNPFR----------AQLVGLGFCWGEADNDLAYIPIGHSGAEGQLPLAEV 445

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111
            + L   L +        N+ ++R VL     L++       TL+            L+ 
Sbjct: 446 LEALAPWLASPTQRKCLQNAKYDRLVLLRH-GLELNGVAV-DTLLADYLRDASARHNLEE 503

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +                    +  +   L  + +           +YC  DV +T  +
Sbjct: 504 LAQRH---------------YGFRPTSFSDLVGKGQTFADVPIEAAAQYCGMDVHLTYRL 548

Query: 172 FKRLEPLSSKEQELWY------------LDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
              L     +  E               +   +   G  +DV     L Q +  +  +L+
Sbjct: 549 AIDLVQQLEQLGEALPQLLSELELPLEPVLAQMEATGIRIDVPYLQELGQSMGDKLQQLE 608

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAI 274
           Q+  +       +    ++L   LF   GL  +    T+   +T   VL   +   P   
Sbjct: 609 QQAIAAAG-EEFNLASPKQLGELLFNTLGLDRKKSRKTKTGWSTDAAVLEKLEDAHPVVP 667

Query: 275 QVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            V  +R   S+     ++ L + + +  GR+         + TGR S      QN+P  +
Sbjct: 668 LVLEHR-TLSKLKSTYVDALPQLVESETGRVHTDFNQAV-TATGRLSSSNPNLQNIPVRT 725

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                      S  +R   +  +   L+ AD + IE R+L  + 
Sbjct: 726 A-------------------------YSRQIRKAFLPQKDWTLLSADYSQIELRILTHLC 760

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           GE+  ++A+ +G+D++  T      +  ++V+ ++R +GK +   + Y  GA   Q+ A 
Sbjct: 761 GEEALVEAYNSGDDVHALTARLL--LDKSEVSDEERRLGKTINFGVIYGMGA---QRFAR 815

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
            TG++          +   + +     F  W +         +  +G             
Sbjct: 816 ATGVS--QAEAKEFLSRYKQRYPKVFAFLEWQERLALSRGYVETLMG------------- 860

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                                         R  P  +  +    L    P        ++
Sbjct: 861 ------------------------------RRRPFHFDPQGLGRLKGTDP-------AEI 883

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLT 627
             + +       Q  R            +Q  S DI+ + M++  +          ++L 
Sbjct: 884 DLDVARRGGMEAQQLRAAANAP------IQGSSADIIKKAMVDLQQLLLDQQLPARLLLQ 937

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           VHDE+V E            +   M    S    +PL  E      + 
Sbjct: 938 VHDELVLECAPNALATVQSSVQRTMEQAVS--LSVPLVVEIGSGPNWM 983


>gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
 gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963]
          Length = 1041

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/708 (14%), Positives = 195/708 (27%), Gaps = 165/708 (23%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
                D ET S                 ++  +F             H             
Sbjct: 455  HFAFDTETTSED----------QRKADLVGLSFAMAPGEAYYIPVGHTTTVDGQEPGTQL 504

Query: 51   --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
                +   LK   E+  +    HN+ ++  V+     + +       +++ A        
Sbjct: 505  PLSHVLVQLKPIFEDASIGKYMHNAKYDIAVMLRY-GIQVEGLS-FDSMLAAYLIEPGR- 561

Query: 109  LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                   L L  Q  +    L+              +     +   R   +Y   D  +T
Sbjct: 562  -----RGLGLKEQAFQRLSILMTPI---TELIGSGSKIISMAQVPIRRAADYAGSDADMT 613

Query: 169  REIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
              +   L     K             L  +   +   G  +D    H   + ++ +  K 
Sbjct: 614  LRLVVPLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYGVALDAEFLHEFGEQLNEQLRKA 673

Query: 219  DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275
            +Q +         +    ++L   LF+E  L     T+   +    V+ + + + P    
Sbjct: 674  EQTIYDAVGHH-FNVNSPKQLGEVLFVELKLPAGKKTKTGYSVSADVIENLRGMHPAIDS 732

Query: 276  VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +   R   S+     ++ L   M+   GR+  +     A  +GR S      QN+P  + 
Sbjct: 733  LLEYRQ-LSKLKSTYIDGLQTLMDRQTGRVYTSFNQTIA-SSGRLSSSNPNLQNIPVRTE 790

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                         +R   IA     L+ AD + IE R+LA +  
Sbjct: 791  LGR-------------------------QIRRAFIADPSYVLLTADYSQIELRILANITN 825

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            E   ++AF  GED++  T A  F+V   +VT+DQR + K +                   
Sbjct: 826  EPRLVEAFNQGEDIHTITAASLFSVPVEEVTRDQRRLAKTVV------------------ 867

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                      +     ++    +              K + +  
Sbjct: 868  --------------------------YAVLYGQSAYGLSQVTGMRPGDAADFIKRYHETF 901

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              +      +    EQ    G                             GR     D+ 
Sbjct: 902  PNIKVY---VESTLEQARRQGYVNTC-----------------------FGRKRFIPDMR 935

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
                        + R+     +     +Q  + D++   M+    A         ++L V
Sbjct: 936  --------VLSHVERQAL-EREAVNMPIQGSNADLIKVAMLRLQHAFLQNGMKTRMILQV 986

Query: 629  HDEIVCETPDTDEFNASMLYH-LMT--SNPSWAKGLPLKAEGYESKRY 673
            HDE+V E P  +   A  +   +M         + +P+K +    K +
Sbjct: 987  HDELVFEVPVEELERAKRIVKAVMEGIGALLVPQKVPIKVDMKSGKNW 1034


>gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229]
 gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247]
 gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
 gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1]
 gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH]
 gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU]
 gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280]
 gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
 gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4]
 gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20]
 gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229]
          Length = 926

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 352 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 402 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 460 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 509

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 510 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 569

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 570 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 628

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 629 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTTEGRR- 686

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 687 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 722

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 723 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 777

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 778 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 828

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 829 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 870

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 871 -------------RARM--------IMQ-------------VHDE---LVL--------E 885

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 886 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 922


>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
 gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
          Length = 944

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 97/701 (13%), Positives = 186/701 (26%), Gaps = 147/701 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + ID ET S   +             ++  +              H              
Sbjct: 356 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDNAAQL 405

Query: 51  --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               +   +K  LE+     V  +  ++  V      + +       T++ +        
Sbjct: 406 SREAVLARMKLWLEDETRKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 463

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                 A ++   K              E               A     EY   D  +T
Sbjct: 464 HGMDALAERVLHLKTIT----------YEEVCGKGAAQIGFDEVALDRATEYAAEDADIT 513

Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P               E     + Q +   G  VD       +  +     +
Sbjct: 514 LRLHRALYPKVTEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELGQRLLE 573

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L+Q+  +L      +    +++    F +  L +   T     +T + VL    +  P  
Sbjct: 574 LEQQAFALAGQP-FNLNSPKQIGELFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLP 632

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             + + R   ++      + L + +N       T      + TGR +      QN+P  +
Sbjct: 633 KLLLDFR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 691

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A  G  +V AD + IE R++A ++
Sbjct: 692 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 726

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  ++AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A        
Sbjct: 727 EDEGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 781

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
            + L +   A  +  +     +     +    ++   E    +   G             
Sbjct: 782 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQVAHERGYVETVFGRRLWLP-----DI 836

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +           +A       G A    K   + +    +                  + 
Sbjct: 837 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDWLEGS---------------PNA 881

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           G     + T                  ++Q                            +V
Sbjct: 882 GKPGVPMRTRL----------------VMQ-------------VHDE-----------LV 901

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P  +       L  LM    S    +PL AE      +
Sbjct: 902 LEVPQDELARVRERLPELMCDVAS--LRVPLVAEVGVGSNW 940


>gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
 gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170]
          Length = 923

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 94/693 (13%), Positives = 189/693 (27%), Gaps = 147/693 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLK 58
            L +D ET     +             ++  +F + ++         D      +    K
Sbjct: 352 ILSLDTETTGTDPIR----------AELVGMSFAYAENQAFYVPVPADRTEAQRIVDKFK 401

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
              EN     V  N  ++  VL     ++I       T++            +  + E  
Sbjct: 402 PVFENPQTLKVGQNIKYDMLVLANY-GVEIQ-GPMFDTMIAHYVLQPELHHGMDYLAEIY 459

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +  + +ELI                K            Y   D  VT ++   LE
Sbjct: 460 LH--YETIKIEELIG---------PKGKNQKNMRDLDPANIYRYACEDADVTLKLKNVLE 508

Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
               +             L  +   +   G  +D       ++       ++++E+  L 
Sbjct: 509 KELKQNDAEALFCDIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHRLA 568

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF    +      T+T    T + VL S K       ++  +R 
Sbjct: 569 GV-EFNIASPKQVGEVLFDRLKIVDKPKKTKTGQYVTSEEVLESLKGKHEIVEKILEHR- 626

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     ++ L + +N +     T      + TGR S      QN+P  +   +E   
Sbjct: 627 GLKKLLGTYIDALPQLINPETGHIHTSFNQTVTATGRLSSSNPNLQNIPVRNEDGKE--- 683

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R   I  EG +   AD + IE R++A ++G+   ++A
Sbjct: 684 ----------------------IRKAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEA 721

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F   +D++  T A+ +      VT++QR+  K     + Y               L ++ 
Sbjct: 722 FRANQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISV-----FGLAERLGIDR 776

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                  +   E +   + +     +   +    +              R     V    
Sbjct: 777 KEAKELIDGYFENYPHVKEYMDSSIQAARQKGYIETVFRRRRYLPDINSRNAV--VRGY- 833

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +        G A    K   + +                 R      + +      
Sbjct: 834 --AERNAINAPIQGSAADIIKVAMIRIY----------------RRFREEGIRSK----- 870

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
                                           M+          L VHDE+       ++
Sbjct: 871 --------------------------------MI----------LQVHDELNFSVVPEEK 888

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                +    M S   +   +PL A+    K +
Sbjct: 889 EKVQQIVIAEMESA--YKMKVPLLADCGWGKNW 919


>gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 870

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 91/640 (14%), Positives = 185/640 (28%), Gaps = 152/640 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT +QR   K +                    G++ 
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GLIYGMS- 769

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            + +        ++    + +++  V E
Sbjct: 770 -----------------------------AFGLSRQLNIPRKEAQKYMDLYFERYPGVLE 800

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                    ++                             +    GR L   D+ ++ + 
Sbjct: 801 YMERTRAQAKE--------------------------QGYVETLEGRRLYLPDIKSSNAA 834

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                 +               +Q  + DI+   M+    
Sbjct: 835 RRAGAER---------AAINAPMQGTAADIIKRAMIAVDA 865


>gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 931

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 90/698 (12%), Positives = 191/698 (27%), Gaps = 166/698 (23%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKE 59
           D ET S              D  ++     + +  +      H         ++ Q L+ 
Sbjct: 367 DTETTSLDP----------RDAQLVGIGCCWSEGDIAYLPIGHRQGSNLDWELVKQSLQP 416

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
             E+ +      N  ++ ++      + +   +    ++ +      ++      A    
Sbjct: 417 LWEDPNRPKSLQNCKYDLSIF-RAHGIRLQGIQ-FDPMLASYVLDPEASHNLADLAATHL 474

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           +      K+L+              + +           EYC  D      +   L    
Sbjct: 475 NLPTTSYKKLLG-------------KEQSIADIPISKVAEYCGTDAYCAYRLVPILTEKL 521

Query: 180 SKEQELWY------------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            K     +            + + +   G  VD       +Q ++ E   L+Q+  +   
Sbjct: 522 QKTDPRLWDLFIQVELPLAQVLEEMEWIGIRVDTEFLRQFSQELEQELQSLEQKAYAQAG 581

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    ++L + LF +  L +    +     +T   VL   +   P    +   R  
Sbjct: 582 -ETFNLNSPKQLGSLLFEKLKLDIRKTRKTATGYSTDASVLEKLEGDHPLIETIVQYR-T 639

Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            ++     ++ L   + SD GR+         + TGR S      QN+P  +        
Sbjct: 640 LAKLKSTYVDALPALVRSDTGRVHTDFNQ-TVTATGRLSSSNPNLQNIPIRTE------- 691

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                              S  +R   I  EG  L  AD + IE R+LA ++ E   L+ 
Sbjct: 692 ------------------FSRRIRQAFIPQEGWLLTAADYSQIELRILAHLSQEPALLEG 733

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F +GED++                                               L    
Sbjct: 734 FRSGEDVHT----------------------------------------------LTARL 747

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                +  S         N+           A       +  ++  + + ++++ +    
Sbjct: 748 LLEKQEITSEERRLAKTINYGVIYGMGAQRFARTAGVSLSEAKQFLQRFNERYAGIFAYL 807

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                  E+                          +  +    GR   + ++    S L 
Sbjct: 808 RSTEAFVEK--------------------------HGYVETILGRRRYFPNL----SRLT 837

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETP 637
              +Q               +Q  + DI+   M+   +        ++L VHDE+V E  
Sbjct: 838 GHRKQAELRA-----AVNAPIQGSASDIIKVAMVRLRQKLQNFRSRLLLQVHDELVFEVD 892

Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            ++      ++   M         +PL  +      ++
Sbjct: 893 PSEWQALKPLIQREMEGAVP--LSIPLVVDIQIGHNWK 928


>gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1]
 gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1]
          Length = 946

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 113/721 (15%), Positives = 204/721 (28%), Gaps = 184/721 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-----PQV 56
             + +D ET S            A +  ++  +     +        H         P+ 
Sbjct: 357 RLVAVDTETSSLD----------AMEADLVGVSLALAPNDACYIPLAHGGTDMFSDKPEQ 406

Query: 57  LK---------EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
           +            LE+  V  V  N  ++  VL     + I +     T+V++       
Sbjct: 407 VAMEDALAALKLLLEDDSVLKVFQNGKYDLNVLAR---VGIDVSPIEDTMVMSFDLDAGR 463

Query: 108 A--------LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  + E              L+ +    +       +  P          E
Sbjct: 464 GEGMGGGHGMDELSERH------------LLHKPLAFKDVCGTGKKAIPFGEVPLDRATE 511

Query: 160 YCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  VT  +++ L+P              ++ L  +   +   G  VD A    L++
Sbjct: 512 YAAEDADVTLRLYRMLKPRLSEEGGTKIYERVDRPLIPVVAGMEREGIKVDRARLAKLSE 571

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSS 265
                   L++E+  +      +    ++L   LF + G            +T Q VL +
Sbjct: 572 EFATTTASLEKEIHEIAGQQ-FAVGSPKQLGEILFDKMGFKGGKKGKSGAYSTDQSVLEN 630

Query: 266 NKKLT---PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
             K     P A +V       S+      + L   +N +     T   L  ++TGR S  
Sbjct: 631 LAKDEAAKPIADKVL-EWRHLSKLKSTYTDALQAQINPETGRVHTSYSLVGAQTGRLSST 689

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P  +                              +R   +  +G  L+ AD +
Sbjct: 690 DPNLQNIPIRTEIGRT-------------------------IREAFVPEDGNVLLAADYS 724

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+ A MA      +AF  GED++  T    F     +VT+D RA  K +  A+ Y 
Sbjct: 725 QIELRLAAHMADVDTLKEAFANGEDIHARTATEMFG----EVTRDTRARAKTINFAILYG 780

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                  +      L +                                           
Sbjct: 781 IS-----RWGLAGRLEVEP---------------------------------------DE 796

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            + +   + Q+   +     E  +   +                                
Sbjct: 797 AQDMIDTYFQRFPGIQRYIMETLETVRE--------------------------RGYSET 830

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----AT 618
             GR   +  + +        +    R            +Q  S DI+   M        
Sbjct: 831 LFGRKTWFPRITSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMARMLPALR 881

Query: 619 KAGY---DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKR 672
             G     ++L VHDE+V E PD D   AS +   +M     P+ +  +PL  +    + 
Sbjct: 882 DEGLGNVRMLLQVHDELVFELPDGDVEKASPIIERVMAEAALPAVSLDVPLAVDIGTGQS 941

Query: 673 Y 673
           +
Sbjct: 942 W 942


>gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9]
 gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9]
          Length = 988

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/704 (14%), Positives = 210/704 (29%), Gaps = 146/704 (20%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVHD-----------PVM 53
           D ET                +  ++     +      V      H+             +
Sbjct: 392 DTETTDLDP----------RNANLVGIGCCWGTGENDVAYIPLGHNITSNLEKNLPLNTV 441

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
              L++ L + D      N+ F+R + K    + +        ++ +             
Sbjct: 442 LSTLEKILVSGDYPKTFQNAKFDRLIFK-YQGITLD-GVVFDPMLASYVLNPDRTHNLTD 499

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+    ++ E  +++             +R K     +      YC   V  T ++  
Sbjct: 500 LALRYLGLQLTEYDDIVQ-------KSGKKERQKTIADISIHTVANYCGKQVYATWQLVG 552

Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +L                 EQ L  +   +  RG  ++ A    L+Q ++ +   L+ + 
Sbjct: 553 KLREELNEIPALFKLLVDVEQPLEVVLAEMEHRGVIINSAYLQQLSQHIESDLATLEIKA 612

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKK--LTPQAIQ 275
             +      +    ++L   LF + GL  +         +T    L   ++   T     
Sbjct: 613 TKIAG-EKFNLGSPKQLSYILFEKLGLSTKYSRKISTGYSTDAATLEKLQEVDQTGFVDA 671

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++     ++ L E +N   +   T     A+ TGR S      QN+P  +  
Sbjct: 672 IIEYR-TLAKLKSTYVDALPELVNHKTQRIHTNFNQTATATGRLSSSNPNLQNIPIRTA- 729

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                    S  +R   +   G  +V AD + IE R+LA ++ E
Sbjct: 730 ------------------------FSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQE 765

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++A+   +D++  T    F      VT ++R   K +   + Y  G   F +     
Sbjct: 766 PMLIQAYSNNQDIHTLTAKLLF--DKEDVTSEERRFAKTINFGVIYGMGVLKFSR----- 818

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
              ++            + +     +   +++        +  +G       + +     
Sbjct: 819 STGVDKNIANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILGR------RRYFD--- 869

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                               K +   K +D+  + + K KN                   
Sbjct: 870 -----------------FTNKTLQQLKGKDLQEIELNKLKN------------------- 893

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDE 631
               L      L R            +Q  S DI+   M+   +        ++L VHDE
Sbjct: 894 ----LGPYDAGLLRSAANAP------IQGSSADIIKIAMVRLHEVLRRYQAKLLLQVHDE 943

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +V E P ++       +  +M +       +PL  + +  + + 
Sbjct: 944 LVFEVPPSEWDELQLQIKSVMENAMK--LSVPLVVDIHVGENWM 985


>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
 gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
          Length = 944

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/701 (13%), Positives = 184/701 (26%), Gaps = 147/701 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + ID ET S   +             ++  +              H              
Sbjct: 356 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQL 405

Query: 51  --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               +   ++  LE+     V  +  ++  V      + +       T++ +        
Sbjct: 406 SREAVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGIT-HDTMLQSYVLASHRN 463

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                 A ++   K              E               A     EY   D  +T
Sbjct: 464 HGMDALAERVLHLKTIT----------YEEVCGKGAAQIGFDEVALDRATEYAAEDADIT 513

Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P               E     + Q +   G  VD       +  +      
Sbjct: 514 LRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELGQRLLA 573

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L+QE  +L      +    +++    F +  L +   T     +T + VL    +  P  
Sbjct: 574 LEQEAYALAGQP-FNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLP 632

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             + + R   ++      + L + +N       T      + TGR +      QN+P  +
Sbjct: 633 KLLLDYR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 691

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A  G  +V AD + IE R++A ++
Sbjct: 692 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 726

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+   ++AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A        
Sbjct: 727 GDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 781

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
            + L +   A  +  +     +     +    ++   E    +   G             
Sbjct: 782 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLP-----DI 836

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +           +A       G A    K   + +    +                  + 
Sbjct: 837 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDWLEGS---------------PNA 881

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
               + + +                  ++Q                            +V
Sbjct: 882 DKPGTPMRSRL----------------VMQ-------------VHDE-----------LV 901

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P  +       L  LM         +PL AE      +
Sbjct: 902 LEVPQDELARVRERLPELMCGVA--LLSVPLVAEVGVGSNW 940


>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
 gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
          Length = 946

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/701 (13%), Positives = 184/701 (26%), Gaps = 147/701 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + ID ET S   +             ++  +              H              
Sbjct: 358 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQL 407

Query: 51  --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               +   ++  LE+     V  +  ++  V      + +       T++ +        
Sbjct: 408 SREAVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGIT-HDTMLQSYVLASHRN 465

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                 A ++   K              E               A     EY   D  +T
Sbjct: 466 HGMDALAERVLHLKTIT----------YEEVCGKGAAQIGFDEVALDRATEYAAEDADIT 515

Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P               E     + Q +   G  VD       +  +      
Sbjct: 516 LRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELGQRLLA 575

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L+QE  +L      +    +++    F +  L +   T     +T + VL    +  P  
Sbjct: 576 LEQEAYALAGQP-FNLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAEDYPLP 634

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             + + R   ++      + L + +N       T      + TGR +      QN+P  +
Sbjct: 635 KLLLDYR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 693

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A  G  +V AD + IE R++A ++
Sbjct: 694 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 728

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+   ++AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A        
Sbjct: 729 GDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 783

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
            + L +   A  +  +     +     +    ++   E    +   G             
Sbjct: 784 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLP-----DI 838

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +           +A       G A    K   + +    +                  + 
Sbjct: 839 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDWLEGS---------------PNA 883

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
               + + +                  ++Q                            +V
Sbjct: 884 DKPGTPMRSRL----------------VMQ-------------VHDE-----------LV 903

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P  +       L  LM         +PL AE      +
Sbjct: 904 LEVPQDELARVRERLPELMCGVA--LLSVPLVAEVGVGSNW 942


>gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
 gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
 gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
 gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
          Length = 923

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVALEQEAY 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
 gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2]
          Length = 1032

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 92/694 (13%), Positives = 194/694 (27%), Gaps = 168/694 (24%)

Query: 27   DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66
               +   A     +        H                       +   L+  L++  +
Sbjct: 456  QAELCGIALSLGPNDACYIPLGHRQTGDGSGLFAAGLAPDQLGARDVLDALRPLLDSAGL 515

Query: 67   TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEA-LKLSSQK 122
              +  N  F   +L       + +       +++           L A+ E+ L  +   
Sbjct: 516  AKIGFNIKFTAVLLAQH---GVTLRNIDDVQLISYVLDAGRGSHGLDALSESNLGHTLHV 572

Query: 123  MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--S 180
            +                           +       EY      V   +++ L+P     
Sbjct: 573  LGAL-------------TGSGKAKIAFDQVPIDRATEYGGERSDVALRLWRVLKPRLVAE 619

Query: 181  KEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            +   ++         +   +  RG  +D  +   L+        +++ E+  L    + +
Sbjct: 620  RMMAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAGEDI-N 678

Query: 233  SRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
                ++L   LF + GL     T+    +T  +VL    +   +  +   +  + S+   
Sbjct: 679  IGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRS 738

Query: 289  LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
               + L   ++   +   T   L A+ TGR S      QN+P  +    +          
Sbjct: 739  TYTDALPTYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK---------- 788

Query: 349  SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                           +R   +A+ G +LV AD + IE R+L+ +A      KAF+ G D+
Sbjct: 789  ---------------IRRAFVATPGHRLVSADYSQIELRLLSEVADVPALRKAFQDGIDI 833

Query: 409  YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            +  T +  F V    +  D R   K +                    G++          
Sbjct: 834  HAMTASEMFGVPVEGMPSDIRRRAKAINF--------------GIIYGIS---------- 869

Query: 469  NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                    A +            K + ++   +    +E     
Sbjct: 870  --------------------AFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFC 909

Query: 529  EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                                        +  +    GR   Y D+  +     +      
Sbjct: 910  RT--------------------------HGYVETLFGRKCHYPDIKASNP---SIRAFNE 940

Query: 589  REYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDE- 641
            R             Q  + DI+   M+         K    ++L VHDE++ E P+ +  
Sbjct: 941  RAAINARL------QGSAADIIRRAMVRMEDALAEKKLAAQMLLQVHDELIFEVPEDEVT 994

Query: 642  FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
                ++ H+M     P+    +PL+ +   +  +
Sbjct: 995  ATLPVVSHVMQDAPFPAVILNVPLQVDARAADNW 1028


>gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13]
 gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13]
          Length = 923

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAY 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9]
          Length = 923

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
 gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5]
          Length = 1033

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 99/694 (14%), Positives = 195/694 (28%), Gaps = 168/694 (24%)

Query: 27   DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66
               +   A     +        H                           LK  LE+  +
Sbjct: 457  QAELCGIALALAPNDAAYIPLGHRQTGDGSGLFAAGLAPDQLGAREALDALKPLLESAGL 516

Query: 67   TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEA-LKLSSQK 122
              +  N  F   +L       I +       +++ +         L A+ E+ L  +   
Sbjct: 517  AKIGFNIKFTAVLLAQH---GITLRNIDDLQLMSYALDAGRGSHGLDALSESNLGHTLHA 573

Query: 123  MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--S 180
            + E                         +       EY      V   +++ L+P     
Sbjct: 574  LGEL-------------TGSGKAKIGFDQVPIERATEYAGERADVALRLWRVLKPRLVAE 620

Query: 181  KEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            +   ++         +   +  RG  +D ++   L+        +++ E+  L    + +
Sbjct: 621  RMMAVYETLERPLVGVLARMERRGISIDRSVLSRLSADFAQTAARIEAEIRELAGEDI-N 679

Query: 233  SRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
                ++L   LF + GL     T+    +T  +VL    +   +  +   +  + S+   
Sbjct: 680  IGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRS 739

Query: 289  LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
               + L   ++   +   T   L A+ TGR S      QN+P  +    +          
Sbjct: 740  TYTDALPNYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK---------- 789

Query: 349  SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                           +R   IAS G KLV AD + IE R+L+ +A      KAF+ G D+
Sbjct: 790  ---------------IRRAFIASPGYKLVSADYSQIELRLLSEVAEVPALRKAFQDGIDI 834

Query: 409  YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            +  T +  F V    +  + R   K +                    G++          
Sbjct: 835  HAMTASEMFGVPVEGMPSEIRRRAKAINF--------------GIIYGIS---------- 870

Query: 469  NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                    A +            K + ++   +    +E     
Sbjct: 871  --------------------AFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFC 910

Query: 529  EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                                        +  +    GR   Y D+  +     +      
Sbjct: 911  R--------------------------AHGYVETLFGRKCHYPDIKASNP---SIRAFNE 941

Query: 589  REYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEF 642
            R             Q  + DI+   M          K    ++L VHDE++ E PD +  
Sbjct: 942  RAAINARL------QGSAADIIRRAMGRMEDALAEKKLSAQMLLQVHDELIFEVPDDEVA 995

Query: 643  N-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
                ++ H+M     P+    +PL+ +   +  +
Sbjct: 996  ATLPVVRHVMQDAPFPAVLLNVPLQVDARAADNW 1029


>gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 963

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/699 (15%), Positives = 209/699 (29%), Gaps = 150/699 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            ID ET               +   +I  +F             HD            + 
Sbjct: 381 AIDTETDGLD----------TKTAHLIGISFAVAPGKAAYLPLGHDYPEAPAQLNRDKVL 430

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
            + K  LE+     V  N  F++++L     + +       T++ +           + +
Sbjct: 431 ALFKPLLEDPQALKVGQNLKFDQSLLANY-GIKLQGIA-FDTMLESYVFNSVAGRHDMDS 488

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++        Y   D  VT  +
Sbjct: 489 LSERH------------LNHKTLSFEDIAGKGKNQLTFNQIPLEQAAIYAAEDADVTLRL 536

Query: 172 FKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQ 220
              L P   +  +L  + Q I              G  +D  +    ++ + +  T+L++
Sbjct: 537 HLALWPKLKENPDLMKVLQEIEMPLLSVLSRMERTGVMIDPDILLNHSKELQLRLTELEK 596

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T L+ +  L +   T     +T + VL+      P    +
Sbjct: 597 KAHDIAG-ETFNLNSTQQLQTILYEKQTLPVLKKTPKGAPSTNEAVLAELALDYPLPKII 655

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
             +R   ++      + L   ++   GR+  +      + TGR S      QN+P  +  
Sbjct: 656 LEHR-SLTKLKTTYTDKLPLMIHPLSGRVHTSYHQAV-TSTGRLSSRDPNLQNIPVRNEE 713

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G ++V AD + IE R++A ++ +
Sbjct: 714 GRR-------------------------IRHAFIAPRGYQIVAADYSQIELRIMAHLSQD 748

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           Q  L AF  G+D+++ T A  F +  +QV+  QR   K +   L Y   A          
Sbjct: 749 QGLLNAFSEGQDIHLITAAEVFGLPVSQVSAQQRRSAKAINFGLIYGMSA-----FGLAR 803

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN++ F      N     +    ++ +  +E   ++       G          +  + 
Sbjct: 804 QLNVSRFEAERYMNLYFTHYPKVLDYMQRTREEAVKNGYVTTLEGRRLYLADIHSKNANR 863

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + + +  + +   +      R         
Sbjct: 864 R-----KAAEREAINAPMQGTAADIIKRAMIHIDFWLQQEEQKLAPKQKSR--------- 909

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                        VHDE+V E
Sbjct: 910 ----------------------VNLIMQ------------------------VHDELVFE 923

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             D+   +A   +  LM  +    + L LK +      +
Sbjct: 924 VHDSVLKSATDKIRELMEKS---TQNLLLKVDIGFGNNW 959


>gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803]
 gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803]
          Length = 996

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/710 (15%), Positives = 207/710 (29%), Gaps = 155/710 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDPV--------- 52
           + +D ET                   ++     +      +      H            
Sbjct: 400 VAVDTETTDLNPFK----------AQLVGIGVCWGAGLSDLAYIPVGHTDPALTQLPLEV 449

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110
           + + L   L +        N+ ++R +L     L +     + TL+           +L 
Sbjct: 450 VLEQLAPWLSSPSHPKALQNAKYDRLILLRH-GLVL-GGVVMDTLLADYLRDAAAKHSLD 507

Query: 111 AVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            + E    ++        +L+         +    +              YC  DV +TR
Sbjct: 508 GMAERDYGITP---TLFSDLV--------GKAKDGKASCFAEVPSDQAALYCAMDVHLTR 556

Query: 170 EIFKRLEPLSS------------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
            +   L                  E  L  +   +   G  +D++   TL++ +    T+
Sbjct: 557 RLAIDLRQQLQASGEQLTNLLDQVELPLEPVLALMEATGIRIDLSYLDTLSKEMGETLTR 616

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQ 272
           L+ + +        +    ++L   LF   GL  +         +T   VL       P 
Sbjct: 617 LEADAKQAAGVD-FNLASPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDKLADDHPV 675

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              V  +R+  S+     ++ L + +    GR+         + TGR S      QN+P 
Sbjct: 676 VPLVLEHRV-LSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNIPV 733

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +                           S  +R   +  E   L+ AD + IE R+L  
Sbjct: 734 RTE-------------------------YSRRIRKAFLPQEHWTLLSADYSQIELRILTH 768

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++GE+   +A+  G+D++  T      +    V+ D+R +GK +   + Y  GA   Q+ 
Sbjct: 769 LSGEEVLQQAYRDGDDVHALTARLL--LEKDDVSADERRLGKTINFGVIYGMGA---QRF 823

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A  TG++          +   E +     F    +         +  +G           
Sbjct: 824 ARETGVS--QTDAKEFLSKYRERYPKVFAFLELQERLALSRGYVETIMG----------- 870

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                                           R  P  + +     L+   P        
Sbjct: 871 --------------------------------RRRPFHFDRNGLGRLLGKDPF------- 891

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
           ++  + +       Q  R            +Q  S DI+   M+    A         ++
Sbjct: 892 EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALQQHSLPARLL 945

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           L VHDE+V E   +   +   ++   M         +PL AE      + 
Sbjct: 946 LQVHDELVLEVEPSALDDVKALVVSTMEKAVE--LSVPLVAETGVGSNWM 993


>gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
 gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969]
          Length = 932

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 203/701 (28%), Gaps = 154/701 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET     L+            +I  +F             HD           
Sbjct: 353 DVFAFDTETDGLDTLSNN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRD 402

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   LK  LE+     V  N  F++++L     +++       T++ +           
Sbjct: 403 WVLATLKPLLEDDKALKVGQNLKFDQSMLARY-GIELRGIA-FDTMLESYVLNSVAGRHD 460

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + ++ E              L  +    E            ++ A    G Y   D  VT
Sbjct: 461 MDSLAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYASEDADVT 508

Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
            ++   L P               E  L  +   I   G  +D  +    ++ + +   +
Sbjct: 509 LQLHLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDE 568

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+++   L      +    ++L+  L+ +  L +   T     +T + VL+      P  
Sbjct: 569 LEKQAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLP 627

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +   R   ++      + L   +N   GR+  +      + TGR S      QN+P  
Sbjct: 628 KVILEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVR 685

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R   IA +G +++ AD + IE R++A +
Sbjct: 686 NEEGRR-------------------------IRQAFIAPQGYRIMAADYSQIELRIMAHL 720

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F +   +VT +QR   K +   L Y   A       
Sbjct: 721 SQDEGLLTAFAAGKDIHRATAAEVFGLPLEKVTSEQRRSAKAINFGLIYGMSA-----FG 775

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               LN+         +   E +     +    ++   +        G          R 
Sbjct: 776 LARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRN 835

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            + R         +        G A    KR  + +    + +   ++ +          
Sbjct: 836 ANRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRV---------- 880

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                                       I+Q                    +V  VH E 
Sbjct: 881 ----------------------------IMQ-------------VHDE---LVFEVH-ES 895

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E+ +        +  LM  +   A  +PLK +      +
Sbjct: 896 VLESAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928


>gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177]
 gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
 gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655]
 gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
          Length = 923

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
 gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
 gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
          Length = 923

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 923

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/697 (14%), Positives = 194/697 (27%), Gaps = 152/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  ++         HD            + 
Sbjct: 347 AFDTETDSLDYMV----------ANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWVL 396

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+ +   +  N  ++ +V+     +++   ++  T++ +           + +
Sbjct: 397 AQLKPLLEDPNQAKIGQNLKYDASVIARY-GIEMQGIKY-DTMLESYVYNSVVGRHDMDS 454

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L  +    E            ++      G Y   D  +T  +
Sbjct: 455 LALRY------------LEHKNISFEEIAGKGKGQLTFNQIDLEQAGPYAAEDADITLRL 502

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   +   G  +D       +Q +     +L++
Sbjct: 503 HNALYPKVSADEKLLHVFSDIEMPLVPVLSRMERTGVLIDSMKLSAQSQEIAQRLDELEK 562

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
               +      +    ++L+  LF + GL         T +T + VL       P    +
Sbjct: 563 RAFEIADQ-EFNLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPLPKLI 621

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L + +N       T      + TGR S      QN+P  +   
Sbjct: 622 LEYR-GLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 680

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA +G K++  D + IE R++A ++G++
Sbjct: 681 RR-------------------------IRQAFIAPQGYKVLAIDYSQIELRIMAHLSGDK 715

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A    +   QV+ +QR   K +   L Y   A           
Sbjct: 716 ALLDAFCHGKDIHAATAAEILGLPLDQVSSEQRRRAKAINFGLIYGMSA-----FGLAKQ 770

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L++         N+  E +     +    +    E    +   G          R    R
Sbjct: 771 LDMGRGEAQEYMNTYFERYPGVLEYMETTRTVASEQGYVETLFGRRLYLPDIKSRNGLRR 830

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +A       G A    KR  V +      +        SGR  +   V + 
Sbjct: 831 -----KAAERAAINAPMQGTAADIIKRAMVLVDEWIGQQE-------SGRVRLLMQVHDE 878

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
             +    +                                              EI    
Sbjct: 879 LVFEVQES----------------------------------------------EI---- 888

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               E  A  +  LM S       +PL A+    + +
Sbjct: 889 ----ESVAQEIKTLMESAAQ--LDVPLIADIGYGENW 919


>gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM
           22836]
          Length = 933

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/690 (14%), Positives = 196/690 (28%), Gaps = 145/690 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEA 60
             D ET     +             ++  +F F +          D      +    +  
Sbjct: 364 CFDTETTGLDPIVS----------ELVGMSFAFKEGEAYYVPVPADFDEAKKLIDKFRPF 413

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            EN  +  +  N  ++  VLK   ++ +   +   T++                 L+ + 
Sbjct: 414 FENEKILKIGQNIKYDIIVLKKY-DIHVR-GKLFDTMIAHYLINP---------ELRHNM 462

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
             M E           E                     +Y   D  VT ++ + LE    
Sbjct: 463 DYMAETYLKYRTIHIDELIGAKGKNQLNMRSLRPDQISDYACEDADVTLKLKRILEKAIE 522

Query: 181 KE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           K+            L Y+   +   G  +D       ++ + +E   ++ E+  L     
Sbjct: 523 KQDLSKLFYEIELPLIYVLADMEFTGVRLDTVALGEYSKTLTIELQNIESEIFKL-GETE 581

Query: 231 SSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
            +    +++   LF +  +      T+T    T +  L S K   P   ++   R    +
Sbjct: 582 FNINSAKQVGEVLFDKLKIIDKPKKTKTGQYVTSEETLESIKNTHPIVNKILEYR-GLKK 640

Query: 286 SAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                ++ L   +   DG++  +      + TGR S      QN+P       E      
Sbjct: 641 LLSTYIDALPLLVEPKDGKIHTSFNQ-TVTATGRLSSTNPNLQNIPIRDAQGRE------ 693

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                              +R   IA EG     AD + IE R++A ++ +   ++AF +
Sbjct: 694 -------------------IRKSFIADEGCLFFSADYSQIELRIMAHLSQDPSMVEAFNS 734

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A+ + +   +VT D R   K     + Y               L +     
Sbjct: 735 GEDIHAATAAKIYKLKIDEVTSDMRRKAKTANFGIIYGISV-----FGLAERLTIPRGEA 789

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
               +   E +   + +      +  E    +   G   +R       +++ V       
Sbjct: 790 KELIDGYFETYPKVKEYMDKCITDAREKTYVETVFGR--KRYLPDINSRNATVRGY---A 844

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +        G A    K                                     +N   
Sbjct: 845 ERNAINAPIQGSAADIIK-----------------------------------VAMNNIF 869

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
           ++  +E                                 ++L VHDE+     + +    
Sbjct: 870 KRFEKENI----------------------------KSKMILQVHDELNFNVLENEIDKV 901

Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             +    M +    A  +PL+A+  + K +
Sbjct: 902 QKIVIEEMENAYKLA--VPLRADCGKGKNW 929


>gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
 gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380]
          Length = 932

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/698 (15%), Positives = 204/698 (29%), Gaps = 154/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRQWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +D+       T++ +           + +
Sbjct: 406 DTLKPLLEDEKALKVGQNLKFDQSMLARY-GIDLRGIA-FDTMLESYVLDSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511

Query: 172 FKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P   +           E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQQSEGLKRVFQDIEMPLLPILSRIERTGVLIDQNILAAHSKELAIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHELAG-EPFNLASPKQLQVILYEKQQLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 IEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G +++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPKGYRIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A          
Sbjct: 724 KGLLAAFAAGKDIHRATAAEVFGLPLEGVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+         +   E +     +    ++   +        G          R  + 
Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDINSRNANR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + ++  ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQESAPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH E V E
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ETVLE 898

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + +        +  LM  +   A  +PLK +      +
Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928


>gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
 gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9]
          Length = 876

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 302 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 351

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 352 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 409

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 410 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 459

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 460 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 519

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 520 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 578

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 579 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 636

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 637 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 672

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 673 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 727

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 728 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 778

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 779 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 820

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 821 -------------RARM--------IMQ-------------VHDE---LVL--------E 835

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 836 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 872


>gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21]
 gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII]
 gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866]
          Length = 935

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/700 (14%), Positives = 200/700 (28%), Gaps = 155/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 359 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN ++  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 409 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 466

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 467 DDLAKRY--------LGHETIAF----ESIAGKGKSQLTFNQIPLEQATEYAAEDADVTM 514

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 515 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTAL 574

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 575 EEQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 632

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 633 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 692

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 693 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 727

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  ++T +QR   K +   L Y   A        +
Sbjct: 728 DQGLINAFSQGKDIHRSTAAEIFGVSLDEITSEQRRNAKAINFGLIYGMSA-----FGLS 782

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++        +   + +   + F   ++E        +   G              
Sbjct: 783 RQLGISRADAQKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAM 842

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +        G A    KR  + L  +                    D+ 
Sbjct: 843 RR-----KGAERVAINAPMQGTAADIIKRAMIKLDEVI---------------RHDPDI- 881

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                   E I+Q                            +V 
Sbjct: 882 ------------------------EMIMQ-------------VHDE-----------LVF 893

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E   +   F    +   M +       +PL  E    + +
Sbjct: 894 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 931


>gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
 gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909]
          Length = 932

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/698 (14%), Positives = 201/698 (28%), Gaps = 154/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSSN----------LIGISFAVAPGEAAYLPLAHDYLDSPAQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +++       T++ +           + +
Sbjct: 406 ATLKPLLEDDKALKVGQNLKFDQSMLARY-GIELRGIA-FDTMLESYVLDSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G +++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPKGYRIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F     +VT +QR   K +   L Y   A          
Sbjct: 724 KGLLAAFAAGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L++         +   E +     +    ++   +        G          R    
Sbjct: 779 QLSIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNATR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +   ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH E V E
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + +        +  LM  +   A  +PLK +      +
Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928


>gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668]
 gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668]
          Length = 923

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTTEGRR- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 928

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/695 (14%), Positives = 201/695 (28%), Gaps = 149/695 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +          +V  
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S      K    +    E            ++ A    G Y   D  VT ++  +
Sbjct: 455 RHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLK 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P   +              L  +   +   G  +D A+ H  ++ + +   +L+++  
Sbjct: 512 MWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            +      +    ++L+T LF + G+     T     +T + VL       P    +   
Sbjct: 572 DIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L   +N       T      + TGR S      QN+P  +      
Sbjct: 631 R-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA E   +V AD + IE R++A ++ ++  L
Sbjct: 689 ------------------------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G+D++  T A  F +    VT++QR   K +   L Y   A        +  LN+
Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLDSVTREQRRSAKAINFGLIYGMSA-----FGLSRQLNI 779

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    +   E +     +    +    E    +   G          R     +  
Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGR---------RLYLPDIKS 830

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                           +       +  P+               
Sbjct: 831 ---------------------------SNAARRAGAERAAINAPT--------------- 848

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVCETPD 638
             T    + R         +  +Q    +     M+         +V  VH        D
Sbjct: 849 QGTAADIIKRAMI----AVDAWIQ---AEQPRVRMIMQVHDE---LVFEVH-------KD 891

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +  A  ++ LM +       +PL  E    + +
Sbjct: 892 DLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924


>gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
 gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970]
          Length = 932

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/698 (15%), Positives = 204/698 (29%), Gaps = 154/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +++       T++ +           + +
Sbjct: 406 ATLKPLLEDEKALKVGQNLKFDQSMLARY-GIELRGIA-FDTMLESYVLNSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEEAGPYASEDADVTLQL 511

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G +++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPKGYRIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F +   +VT +QR   K +   L Y   A          
Sbjct: 724 EGLLAAFAAGKDIHRATAAEVFGLPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+         +   E +     +    ++   +        G          R  + 
Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + ++  ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQESEPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH E V E
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + +        +  LM  +   A  +PLK +      +
Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928


>gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
 gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638]
          Length = 932

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/698 (15%), Positives = 204/698 (29%), Gaps = 154/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I F+F             HD            + 
Sbjct: 356 AFDTETDGLDTLSSN----------LIGFSFAVAPGEAAYLPVAHDYLDAPTQLDRNWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L    ++++       T++ +           + +
Sbjct: 406 AQLKPLLEDEKALKVGQNLKFDQSMLARY-DIELRGIA-FDTMLESYVLDSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPISGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G +++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPKGYRIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           Q  L AF  G+D++  T A  F +   +VT DQR   K +   L Y   A          
Sbjct: 724 QGLLTAFAAGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+         +   E +     +    ++   E        G          R    
Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +   ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH E V E
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + +        +  LM  +   A  +PLK +      +
Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928


>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
 gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
          Length = 910

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/699 (16%), Positives = 204/699 (29%), Gaps = 156/699 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------M 53
           + +D ET S   +             ++  +F  +          HD             
Sbjct: 335 VALDTETTSLDPM----------QAKLVGMSFSVEAGKAAYVPLAHDYTGAPQQLDFTAA 384

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111
            + L+  LE+  +  +  N  +++ VL     + +       TL+ +          +  
Sbjct: 385 LRQLRPMLEDASIPKLGQNLKYDKHVLANH-GIALNGIT-HDTLLQSYVLESHRTHGMDD 442

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L  +    E       +  P  + +     EY   D  +T ++
Sbjct: 443 LAMRH------------LGVQTVTYEQIAGKGAKQVPFSQISIETAAEYAAEDADITLQL 490

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +  TI   G  +D A+    +  +  +   L+Q
Sbjct: 491 HQALYPQIEADDKLAFVYREIEMPLLDILYTIERNGVLIDQAMLQAQSHEIGQKLIDLEQ 550

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+  LF + G+     T +    T + VL       P    +
Sbjct: 551 QAYDIAGQP-FNLGSPKQLQEILFGKLGIKPLKKTPSGAPSTDEDVLQELALDYPLPKVL 609

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +     A  TGR +      QN+P  +  
Sbjct: 610 LEYR-GLAKLKSTYTDKLPRMINPATGRVHTSYSQAVA-ITGRLASSDPNLQNIPVRTAE 667

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G  ++ AD + IE R++A ++ +
Sbjct: 668 GRR-------------------------IREAFIAPPGASIISADYSQIELRIMAHLSQD 702

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  GED++  T A  F V   +V+ +QR   KV+   L Y   A          
Sbjct: 703 EGLLSAFAKGEDIHRATAAEIFGVPRDEVSSEQRRYAKVINFGLIYGMSA-----FGLAQ 757

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+   A     +     +     + +  +    E    + F G      +        
Sbjct: 758 NLNIERGAAQNYIDRYFARYPGVREYMQNTRMLAKEQGYVETFFGRRLWVPEINSPNGMR 817

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +A       G A    K   + +                 R L   ++ +
Sbjct: 818 R-----AGAERAAINAPMQGTAADLIKLAMIAVD----------------RWLREHNLNS 856

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                        VHDE+V E
Sbjct: 857 KI-----------------------IMQ------------------------VHDELVLE 869

Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            PD +       L  LM         +PL AE    K +
Sbjct: 870 VPDAELELVQQTLPQLMQGVAK--LDVPLLAEVGVGKNW 906


>gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 926

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/709 (14%), Positives = 188/709 (26%), Gaps = 168/709 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DP------------ 51
            D ET     L             ++  +             +H                
Sbjct: 341 FDTETTGLDPLR----------AKLVGVSLALAPGRACYIPVMHSSGEAQGDLLGGPSAD 390

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                    +   LK  L +  V  V HN  ++  V+     L + I  +  T++L+   
Sbjct: 391 APKLIPAADILARLKPLLADPAVLKVGHNIKYDMQVMA---GLGLAIQSFDDTMLLSYVL 447

Query: 104 GL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   L  +          +  G   I+                   R        Y
Sbjct: 448 DGASHGHGLDELCL--------LHLGHRNISF----AEVCGSGRNQVTFDRVPLDKACAY 495

Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  +T  +   L+P            + E+ L  +   +   G  VD      L++ 
Sbjct: 496 AAEDADMTLRLHGLLKPRLLLERMVSVYETLERPLVPVIAAMERDGIKVDRPQLMALSED 555

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
                T+L+ E+ +L  G   +    ++L   LF    L     T+T    T   VL   
Sbjct: 556 FGRRLTELETEVVALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGADVLEDL 615

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
             L P   ++ + R   S+      + LV  +N       T   L A+ TGR S      
Sbjct: 616 AHLHPLPARLLDWRQ-LSKLKGTYTDALVAQINPATGRVHTSYALAATTTGRLSSSDPNL 674

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +    +                         +R   +A  GK+L+ AD + IE 
Sbjct: 675 QNIPIRTEEGRK-------------------------IRHAFVAEPGKRLISADYSQIEL 709

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A +A  +    AF  G D++  T ++ F V    +    R   K +   + Y     
Sbjct: 710 RLVAHVAEIEGLRDAFADGADIHAITASQVFGVPLDGMDSALRRRAKAINFGIIYGISP- 768

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                     L +          +    + +   F    +E   E        G      
Sbjct: 769 ----FGLAAQLGIPQGEAKAYIEAYFARYPEIRTFMERTKEEAREKGFVTTLFGRKVFT- 823

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                     + +    +    E+   NG                               
Sbjct: 824 --------PGIKDKNGAMRAFAERAAING------------------------------- 844

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG-MMNATKAGYDIV 625
                               + R                  + L    ++        +V
Sbjct: 845 -----------PIQGGAADIIKRAMIRLPAALV-------AEGLKARLLLQVHDE---LV 883

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           L        E P+ + E    ++  +M +  +    +PL  E   +  +
Sbjct: 884 L--------EAPEDETEATVRVVKRVMEAAAT--LSVPLLVEAGIADSW 922


>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
 gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
          Length = 946

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/701 (13%), Positives = 186/701 (26%), Gaps = 147/701 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + ID ET S   +             ++  +   +          H              
Sbjct: 358 VCIDTETTSIDPML----------AQLVGLSLSVEPGQACYIPVAHRGPDVSGLDAAGQL 407

Query: 51  --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               +   +K  LE+     V  +  ++  V      + +       T++ +        
Sbjct: 408 SREAVLARMKPWLEDAARKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 465

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                 A ++   K              E                     EY   D  +T
Sbjct: 466 HGMDALAERVLHLKTIT----------YEEVCGKGASQIGFDEVPLDRATEYAAEDADIT 515

Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P               E     + Q +   G  +D       +  +     +
Sbjct: 516 LRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLGQRLLE 575

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L+Q+  +L      +    +++    F +  L +   T     +T + VL    +  P  
Sbjct: 576 LEQQAYALAGQP-FNLNSPKQIGEIFFTQLKLPVIKKTASGAPSTDEEVLQKLAEDYPLP 634

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             + + R   ++      + L + +N       T      + TGR +      QN+P  +
Sbjct: 635 KLLLDFR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 693

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A  G  +V AD + IE R++A ++
Sbjct: 694 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 728

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L+AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A        
Sbjct: 729 EDEGLLRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 783

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
            + L +   A  +  +     +     +    +    E    +   G             
Sbjct: 784 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLP-----DI 838

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +           +A       G A    K   + +                        +
Sbjct: 839 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDW---------------------L 877

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
             + S         TR+          ++Q                            +V
Sbjct: 878 DGSPSAGKPGAPMRTRQ----------VMQ-------------VHDE-----------LV 903

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P  +       L  LM    S    +PL AE      +
Sbjct: 904 LEVPQEELSLVRERLPELMCGVAS--LRVPLVAEVGVGANW 942


>gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405]
 gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405]
          Length = 936

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/707 (15%), Positives = 212/707 (29%), Gaps = 172/707 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQ--VL 57
             D ET S   L          +  V  F+    +     +             P+    
Sbjct: 362 SYDCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAF 411

Query: 58  KEA------LENTDVTIVAHNSYFERTV-LKACFNLDIPIHRWICTLVLARSNGL---PS 107
           K+A      L ++ +T++ HN  F+    L +     I       T++ A          
Sbjct: 412 KDAKKAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGIS-ANLFDTMIAAWLLDPARSSY 470

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            +  + E+  +   K    K+L+              + +       +    Y   D  +
Sbjct: 471 GMDKLAES--ILGVKTIRFKDLVK-------------QGQNFSDIPLKEACPYAAEDADI 515

Query: 168 TREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           T   +K+  PL  K             +  L   +  +G  +        ++ +  E   
Sbjct: 516 TFRFYKKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELED 575

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274
            ++++  L      +    ++L+  LF E  L     T+   +T   VL +     P   
Sbjct: 576 CEKDIYRLVGH-EFNIASPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPA 634

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++ + R   ++      +TL +  + +GR+  +    G + TGR S      QN+P    
Sbjct: 635 KILDYR-ALAKLKSTYTDTLPKMTDKNGRIHTSFIQTG-TATGRLSSRDPNLQNIPIRGN 692

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
              +                         +R    A +G+ L+ AD + IE  +LA ++ 
Sbjct: 693 EGRK-------------------------IREAFQAEKGRVLISADYSQIELVILAHLSK 727

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  ++AF TG D++  T +  F V    V++D R I K +                   
Sbjct: 728 DQNLVEAFNTGIDVHAKTASLIFAVDIKDVSQDMRRIAKTIN--------------FGVM 773

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  A          +   KA+   +
Sbjct: 774 YGMS------------------------------AFRLASSLRIPRKRADEFIKAYFATY 803

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           S VS     + Q  EQ                             +    GR      + 
Sbjct: 804 SGVSGFMANVCQEAEQ--------------------------RGYVETLMGRRRYLPAIN 837

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
           +             R            +Q  + DI+   M+   KA         I+L V
Sbjct: 838 SKNKVEK---AGAERIA------VNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQV 888

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           HDE++ E  +++ E   S++   M         +PL+        + 
Sbjct: 889 HDELIIEAAESEREKVMSLVKEKMEGVIK--LSVPLRVSIESGMSWG 933


>gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004]
 gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus bovienii SS-2004]
          Length = 932

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/700 (15%), Positives = 196/700 (28%), Gaps = 155/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHD----------PV 52
             D ET     LT   +         + FA    +  VE       HD            
Sbjct: 353 SFDTETDGLDTLTVNLVG--------MSFAIAVGESEVEAAYLPLGHDYLDAPEQLDLHE 404

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL-PSALK 110
           +   LK  LE+ ++  +  N  F+R VL      D+ ++     T++ +           
Sbjct: 405 VLAALKPLLEDANLPKIGQNLKFDRGVLARY---DVALNGIVFDTMLESYVLNSVSGRHD 461

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A +    K    +E                +    ++       +Y   D  VT  
Sbjct: 462 MDSLADRHLGYKTTTFEE----------IAGKGKKQLTFNQIPLEEAAKYAAEDADVTLR 511

Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           + + + P               E  L  +   I   G  +D       +  +     +L+
Sbjct: 512 LHQVMYPQIDSVPTLKSVFQNIEMPLVPVLSRIERTGVLIDAQTLAEHSTEITARLGELE 571

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           +    L      +    ++L+  LF +  L +   T     +T + VL            
Sbjct: 572 KAAYELAG-EEFNLASPKQLQVILFEKLNLPVLKKTPNGAPSTNEEVLEELADNHELPRV 630

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R   ++      + L + +N   +   T      + TGR S      QN+P  +  
Sbjct: 631 ILEHR-GLAKLKSTYTDKLPQMVNPLTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNDE 689

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA EG  ++ AD + IE R++A ++ +
Sbjct: 690 GRR-------------------------IRQAFIAPEGYCIMAADYSQIELRIMAHLSQD 724

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L+AF  G+D++  T A  F V   +VT +QR   K +   L Y   A        + 
Sbjct: 725 KGLLEAFAQGKDIHSATAAEVFGVPLEEVTSEQRRSAKAINFGLIYGMSA-----FGLSR 779

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L++         +   E +     +    ++   EH   +   G          R    
Sbjct: 780 QLSIPRGEAQRYMDLYFERYPGVLAYMERTRQQAAEHGFVETLEGRRLYLPDIKSRNAMR 839

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    K   + +              P+ R         
Sbjct: 840 R-----KASEREAINAPMQGTAADIIKLAMIAVDNWIVS------EQPNVR--------- 879

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVC 634
                                                 M+         +V  VH     
Sbjct: 880 --------------------------------------MIMQVHDE---LVFEVH----- 893

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +++   A   +  LM  +      +PLK +      +
Sbjct: 894 ---ESELATAEQKISELMEKSMQ--LDVPLKVDVGIGINW 928


>gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
 gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1]
          Length = 920

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/694 (14%), Positives = 198/694 (28%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPV---MPQVL 57
             L +D ET S            A +  ++  +F    H         +      +  + 
Sbjct: 348 KILSLDTETTSTN----------AMEAELVGLSFSVAPHQAFYVPIPANREQTIKIVNLF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K A EN  +  V  N  ++  VL     +++       T++            +  + E 
Sbjct: 398 KPAYENEAILKVGQNIKYDMEVLSRY-GIELK-GNLFDTMIAHYLLQPELRHNMDYMAEV 455

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +    +ELI    KG          K     A     EY   D  +T ++   L
Sbjct: 456 Y--LRYQTVHIEELIGPRGKG---------QKNMRDLAPNDIYEYACEDADITLQLKNIL 504

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L  +   +   G  +D      +++        L+ ++  L
Sbjct: 505 EPKLKEREVDQLFYQMEMPLVRVLTQMEMNGVRIDTKALQEVSESFTKRMNDLEAQIHQL 564

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T +  L            + + R
Sbjct: 565 AG-ESFNVSSPKQVGDILFEKLQIAEKPKKTKTGQFVTSEEELQKYATGNEIVTLILDYR 623

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L + +N       T      + TGR S      QN+P      +E  
Sbjct: 624 -GLKKLLGTYVDALPKLINPQTGHIHTSFNQTVTATGRLSSSDPNLQNIPVRGEDGKE-- 680

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R C I  +G     AD + IE RV+A ++G++  ++
Sbjct: 681 -----------------------IRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHMIE 717

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ G D++  T A+ +      VT+D+R   K     + Y               L ++
Sbjct: 718 AFQEGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIYGITV-----FGLAERLGID 772

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +     +   +++    ++   E    + F                      
Sbjct: 773 RGEAKQLIDGYFTTFPQVQSYMEQAKDMAREKGYVETFF--------------------- 811

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                +RR +P +  +           +        +       
Sbjct: 812 --------------------HRRRYLPDINSQNATVRGFAERNA--------INAPIQGS 843

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                ++     Y     EN +Q                    ++L VHDE+      ++
Sbjct: 844 AADIIKVAMIRIYERFKREN-IQ------------------SKMILQVHDELNFSVLPSE 884

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M +   +   +PL A+      +
Sbjct: 885 KEQVERIVLEEMQNA--YQLKVPLVADAGWGHNW 916


>gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
 gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505]
          Length = 988

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/705 (13%), Positives = 204/705 (28%), Gaps = 148/705 (20%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVHD-----------PVM 53
           D ET                +  ++     +      V      H+             +
Sbjct: 392 DTETTDLDP----------RNANLVGIGCCWGMGENDVAYIPLGHNITTNLEKNLQLNTV 441

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
              L + L + D      N+ F+R + K    + +        ++ +             
Sbjct: 442 LSTLDKILASRDYPKTFQNAKFDRLIFK-YQGVTLD-GVIFDPMLASYLLNPDHTHNLTD 499

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+    ++ E       +          +  K     +      YC   V  T ++  
Sbjct: 500 LALRYLGLQLTE-------YDHIVQKSGKKEPQKTIADISIHTVANYCGKQVYATWQLVG 552

Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +L                 EQ L  +   +  RG  ++ A    L+Q ++ +   L+ + 
Sbjct: 553 KLREELNKIPALFKLLVDVEQPLEVVLAEMEHRGVIINSAYLQQLSQYIESDLATLEIKA 612

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTP--QAIQ 275
             +      +    ++L   LF + GL  +         +T    L   +++        
Sbjct: 613 TKIAG-EKFNLGSPKQLSYILFEKLGLSTKYSRKISTGYSTDAATLEKLQEVDETGFVDA 671

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++     ++ L E +N   +   T     A+ TGR S      QN+P  +  
Sbjct: 672 IIEYR-TLAKLKSTYVDALPELVNHKTQRIHTSFNQTATATGRLSSSNPNLQNIPIRTA- 729

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                    S  +R   +   G  +V AD + IE R+LA ++ E
Sbjct: 730 ------------------------FSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQE 765

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++A+   +D++  T    F      VT ++R   K +   + Y  G   F +     
Sbjct: 766 PMLIQAYSNNQDIHTLTAKLLF--DKEDVTSEERRFAKTINFGVIYGMGVLKFSR----- 818

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ-KH 514
              ++            + +     +   +++        +  +G       + +    +
Sbjct: 819 STGVDKNIANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILGR------RRYFDFTN 872

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             + E                                 K K+   + L            
Sbjct: 873 KTLREF--------------------------------KGKDLQEIEL------------ 888

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHD 630
           N    L      L R            +Q  S DI+   M+   +        ++L VHD
Sbjct: 889 NKLKNLGPYDAGLLRSAANAP------IQGSSADIIKIAMVRLHQVLRPYQTKLLLQVHD 942

Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+V E P ++       +  +M +       +PL  + +  + + 
Sbjct: 943 ELVFEVPPSEWDELQLQIKSVMENAMK--LSVPLVVDVHVGENWM 985


>gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031]
 gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031]
          Length = 935

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 199/700 (28%), Gaps = 155/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 359 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN D+  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 409 TALAAIKPILENPDIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 466

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 467 DDLAKRY--------LGHETIAF----ESIAGKGKGQLTFNQIPLEQATEYAAEDADVTM 514

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 515 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 574

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 575 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 632

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 633 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 692

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 693 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 727

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A        +
Sbjct: 728 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 782

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++        N   + +   + F   ++         +   G              
Sbjct: 783 RQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 842

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +        G A    KR  + +  +                    D+ 
Sbjct: 843 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 881

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                   E I+Q                            +V 
Sbjct: 882 ------------------------EMIMQ-------------VHDE-----------LVF 893

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E   +   F    +   M +       +PL  E    + +
Sbjct: 894 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 931


>gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7]
          Length = 903

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/707 (14%), Positives = 198/707 (28%), Gaps = 159/707 (22%)

Query: 1   MATL------FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---- 50
           M  L        D ET S   +             V+  +F             HD    
Sbjct: 318 MKRLETAELFAFDTETTSLDYM----------QAQVVGVSFAVKTGEAAYLPLAHDYADA 367

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                     + LK  LE+     + H+  ++R VL     +++       T++ +    
Sbjct: 368 PQQLDRDETLKRLKPLLESARHKKLGHHLKYDRNVLLNH-GIELNGIE-HDTMLESYVLN 425

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
             ++        +     + + K L  R    E       +  P  +        Y   D
Sbjct: 426 STAS--------RHDMDSLAQ-KYLDYRTTHYEEVAGKGAKQIPFSQVRIEDATPYAAED 476

Query: 165 VTVTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
             +T  + + L P               E  L  +   +   G  VD       +  +  
Sbjct: 477 ADITLRLHEHLWPQLSAAEGQCRVYREIEMPLVPVLSRMERTGVKVDAERLFAQSHELAE 536

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKL 269
              ++++E   +  G   +    ++++  L+    L           +T + VL      
Sbjct: 537 RMGQIEREAHEVAGGA-FNLGSPKQIQEILYERQKLPVLRKTPKGQPSTAEDVLEQLALD 595

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQN 328
            P    +  +R   S+      + L E ++ D GR+  +     A  TGR S      QN
Sbjct: 596 YPLPKLILEHR-SLSKLKSTYTDKLPERIDPDTGRVHTSYHQAVA-STGRLSSSDPNLQN 653

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +                              +R   +A  G++LV AD + IE R+
Sbjct: 654 IPIRTEEGRR-------------------------IRQAFVAPSGRRLVAADYSQIELRI 688

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++G+   L+AF  G+D++  T A  F V   QV+ +QR   K +   L Y   A   
Sbjct: 689 MAHLSGDAGLLRAFAEGQDIHRATAAEVFGVGLDQVSGEQRRAAKAINFGLIYGMSA--- 745

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   L +         +     +   +++    +E   +    +   G        
Sbjct: 746 --FGLARQLGIERGDAQDYVDRYFARYPGVKDYMESTREKARDLGYVETLFGR--RLYLP 801

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
               ++ ++     +  +        G A    KR  + +    ++     +        
Sbjct: 802 DINARNGQIRA---QAERVAINAPMQGTAADIIKRAMIQVDQWIRESRIPAV-------- 850

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLT 627
                                                        M+         +VL 
Sbjct: 851 ---------------------------------------------MILQVHDE---LVLE 862

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V DE                L   M+        +PL  E      +
Sbjct: 863 V-DE-------DAVDKVREELCVRMSQAAE--LKVPLVVEAGVGDNW 899


>gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 932

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/698 (15%), Positives = 203/698 (29%), Gaps = 154/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +D+       T++ +           + +
Sbjct: 406 AQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIA-FDTMLESYVLDSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA EG +++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPEGYRIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F ++  +VT +QR   K +   L Y   A          
Sbjct: 724 KGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+         +   E +     +    ++   E        G          R    
Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +   ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH E V E
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + +        +  LM  +   A  +PLK +      +
Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 928


>gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e]
 gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e]
          Length = 923

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L++E  
Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEREAY 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTTEGRR- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021]
          Length = 743

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/700 (14%), Positives = 199/700 (28%), Gaps = 155/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 167 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 216

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN ++  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 217 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 274

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 275 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 322

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 323 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 382

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 383 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 440

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 441 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 500

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 501 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 535

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A        +
Sbjct: 536 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 590

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++        +   + +   + F   ++         +   G              
Sbjct: 591 RQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 650

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +        G A    KR  + +  +                    D+ 
Sbjct: 651 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 689

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                   E I+Q                            +V 
Sbjct: 690 ------------------------EMIMQ-------------VHDE-----------LVF 701

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E   +   F    +   M +       +PL  E    K +
Sbjct: 702 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 739


>gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 932

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/698 (15%), Positives = 203/698 (29%), Gaps = 154/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +D+       T++ +           + +
Sbjct: 406 AQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIA-FDTMLESYVLDSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA EG +++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPEGYRIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F ++  +VT +QR   K +   L Y   A          
Sbjct: 724 KGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+         +   E +     +    ++   E        G          R    
Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +   ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH E V E
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + +        +  LM  +   A  +PLK +      +
Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 928


>gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
 gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102]
          Length = 978

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/706 (14%), Positives = 206/706 (29%), Gaps = 160/706 (22%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHD-------PVMPQVL 57
           D ET +              D  ++     +      V      H         ++ + L
Sbjct: 392 DTETTALEP----------RDADLVGIGCCWGMQPDEVAYIPLGHKTGENLHKDLVLEGL 441

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           +  LE+ D      N+ F+R VLK C  +++        ++ +          L  +G+ 
Sbjct: 442 RPILESADYPKALQNAKFDRLVLK-CQGINLA-GVVFDPMLASYILNPDSSHNLMDLGQR 499

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                        LIA+       +                  +YC  D   T  +  +L
Sbjct: 500 YL----------GLIAKSYLDLVPKGK-----TIADIDIPSVADYCGMDAYSTFGLVPKL 544

Query: 176 EPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                            EQ L  +   +   G  ++ A    L+Q ++ E  +L +E   
Sbjct: 545 REELDKIPTLSKLLVEVEQPLEAVLAQMEYTGVRINSAYLKELSQHLETELARLKEEATK 604

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLT--PQAIQVF 277
           +      +    ++L   LF + GL  +   +     +T    L   ++         + 
Sbjct: 605 IAG-ENFNLGSPKQLSQILFEKLGLSTKHSRKIQTGFSTDAATLEKLQEDDKSGFVEAII 663

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R   S+     ++ L   +  D +   T     A+ TGR S      QN+P  +    
Sbjct: 664 EYR-TLSKLKSTYVDALPALVRPDTQRVHTDFNQAATSTGRLSSSNPNLQNIPIRTA--- 719

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                  S  +R   +   G  +V AD + IE R+LA ++ E  
Sbjct: 720 ----------------------FSRQIRKAFLPEAGWLMVAADYSQIELRILAHLSQEPI 757

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++A++  ED++  T    F     ++T ++R I K +   + Y  G+  F +       
Sbjct: 758 LVQAYQQNEDVHTVTGRLVF--EKEKITSEERGIAKTINFGVIYGMGSLRFSR-----ST 810

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            ++            E +     +   +++        +  +G       + +       
Sbjct: 811 GIDKNIANEFIKRFNERYPKVFAYLEQVKKEAIALGYVETILGR------RRYFD----- 859

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--- 574
                                                         S R L   +     
Sbjct: 860 ------------------------------------------FTNNSLRRLKGSNPEDID 877

Query: 575 -NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVH 629
            +    L      L R            +Q  + DI+   M+   +        ++L VH
Sbjct: 878 LSKLKNLGPYDAGLLRSAANAP------IQGSNADIIKIAMVRLHEVLKNYQARLLLQVH 931

Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           DE+V E P  +       +  +M +       +PL  E    + + 
Sbjct: 932 DELVFEIPPDEWEELQPQIKSVMENAVQ--LSVPLLVEARVGENWM 975


>gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str.
           MIT 9202]
          Length = 976

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/712 (15%), Positives = 198/712 (27%), Gaps = 160/712 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------- 50
            + +D ET S   +          D  ++       +    +      H           
Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLS 431

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPS 107
              +   L+  +E+        NS F+R +      LD+       TL+           
Sbjct: 432 IEDVFSKLRNWIEDPRKEKALQNSKFDRQIFFNH-GLDLK-GVTFDTLLADYLLNNQEKH 489

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L  +   L                  K  + +    +NK            YC  DV +
Sbjct: 490 GLSEISFRL---------------FGFKPPSFKETVGKNKDFSFVDIGEASIYCGYDVFL 534

Query: 168 TREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           T +I K  +                 E  L  +   +   G  +D+     L++ +    
Sbjct: 535 TFKIVKIFKERFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTL 594

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270
             ++ ++  L      +    ++L   LF +  L  +    T+   +T   VL       
Sbjct: 595 EDIESKVYEL-AEENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEH 653

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                +  +R   S+     ++ L   +N   GR+        A+ TGR S      QN+
Sbjct: 654 EIIQHLIKHR-TLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +  +  KL+ AD + IE R+L
Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKNWKLLSADYSQIELRIL 746

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A E+  + AF   +D++  T    F     Q++ ++R +GK +   + Y  G K   
Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSEERRVGKTINFGVIYGMGIKK-- 802

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
             A +TG++              E +     F    +             G   E     
Sbjct: 803 -FARSTGVSTPE--AKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK 859

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                  +     K+   + L S R   
Sbjct: 860 -------------------------------------NGLGRLIGKDPYEIDLQSARR-- 880

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
                           Q  R            +Q  S DI+   M+   K          
Sbjct: 881 -----------AGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNVPAK 923

Query: 624 IVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE++ E           ++   M         +PL  +      + 
Sbjct: 924 MLLQVHDELLFEVEQDSLEITTKLVKKTMEDCVK--LNVPLLVDIGTGDNWM 973


>gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450]
          Length = 931

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/698 (14%), Positives = 193/698 (27%), Gaps = 148/698 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET S   +             ++  +F  ++         HD           
Sbjct: 352 DVFAFDTETDSLDYMV----------ANLVGVSFATEEGVAAYVPVAHDYLDAPEQLDRD 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110
            + + LK  LE+     V  N  ++ +VL     +++   +   T++ +           
Sbjct: 402 WVLEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHD 459

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               AL+                   E       +    ++        Y   D  VT  
Sbjct: 460 MDSLALRFLQHS----------CISFEQIAGKGKKQLTFNQIELEQASPYAAEDADVTLR 509

Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  RL     +++            L  +   I   G  +D       +Q + +   +L+
Sbjct: 510 LHNRLLANIEQDEKLKTIYEEVEVPLVPVLSRIERTGVLIDDMKLAAQSQEIALRLDELE 569

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275
           Q+   +      +    ++L+  LF + GL         T +T + VL       P    
Sbjct: 570 QQAFEI-AEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPLPKL 628

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++      + L + +N +     T      + TGR S      QN+P  +  
Sbjct: 629 ILEYR-GLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNDE 687

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G K++  D + IE R++A ++G+
Sbjct: 688 GRR-------------------------IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGD 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF+ G+D++  T A    V   QV+ +QR   K +   L Y   A          
Sbjct: 723 KALLDAFQQGKDIHAATAAEIIGVDIEQVSAEQRRRAKAVNFGLIYGMSA-----FGLAK 777

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         ++  E +     +    +    E    +   G      +   R    
Sbjct: 778 QLGIPRGEAQQYMDTYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMR 837

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +A       G A    K+  + +    + +    + L          V +
Sbjct: 838 R-----KAAERAAINAPMQGTAADIIKKAMLLVDEWIESQGQGRVKLLM-------QVHD 885

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
              +    +              E+ VQ                                
Sbjct: 886 ELVFEVQESALAE---------IESKVQ-------------------------------- 904

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                         LM S       +PL AE      +
Sbjct: 905 -------------ELMESAAQ--LDVPLIAEAGHGDNW 927


>gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
 gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2]
          Length = 893

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/712 (14%), Positives = 204/712 (28%), Gaps = 181/712 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           L ID ET     +             ++  +F   +         H           P  
Sbjct: 317 LAIDTETTGTDPMR----------ADLVGVSFCLKEGKAFYLPVGHHYLGVPAQVSWPDA 366

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALK 110
             VLK+ LE+  V  V  N  ++  VLK    + +       T++ +           L 
Sbjct: 367 RDVLKDVLEDDAVLKVGQNIKYDACVLKRH-GVSLSGIS-FDTMIASYVINPGLRQHNLD 424

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           A+ +             ++I+     +         +     +     EY   D  +T  
Sbjct: 425 ALAQRY--------LNHKMISY----KDVVGKGKNARGFEEVSLEKACEYSCEDADMTFR 472

Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           + + L                E +L  +   +   G  +D AL  T++     E  ++++
Sbjct: 473 LRRILAKQIRDEKNEALFNELEMKLLPVLLDMEMTGIKIDTALFETMSADFAEEMKQVEK 532

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQ 275
           ++++       +    ++L   LF    L     T      +T  +VL    +    A +
Sbjct: 533 KIQADAGM-EFNLNSPQQLGKVLFEVLKLPGGRKTAKTKRYSTDVKVLQKLAESHRIARE 591

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++     L+ LV  +N + +   T      + TGR S      QN+P    +
Sbjct: 592 ILRFR-SLAKLKSTYLDALVRMVNPETKRVHTSFNQTVAATGRLSSSDPNLQNIPIRGDA 650

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
            +                          +R   +A  GK LV AD + IE RV A  + +
Sbjct: 651 GK-------------------------NIRKGFMAGSGKILVAADYSQIELRVFAHYSQD 685

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AF+  +D++  T          +VT + R I K +                    
Sbjct: 686 AAFMAAFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINF--------------GIIY 731

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+     +  +                                   A +    A+  ++ 
Sbjct: 732 GMGPQKLSEELSI------------------------------SKEAAQDYINAYYDRYK 761

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V        +A E  +E G                              R     D+ +
Sbjct: 762 GVKRFK---EKAIETALEKGYVTTLFN-----------------------RRRYLPDISH 795

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
           N    N    +  R            +Q  + D++ + M+              ++L VH
Sbjct: 796 NN---NRIRSEAERMA------VNTPIQGTAADLIKKAMIEIHNRLTEAAFQSKMLLQVH 846

Query: 630 D--------EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           D               +  +   +M+   M     +   +PLK +  +   +
Sbjct: 847 DELLLEVPE-------EEADDLINMIREEMEGV--YPLRVPLKVDIGKGLNW 889


>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
          Length = 959

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/701 (13%), Positives = 183/701 (26%), Gaps = 147/701 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
           + +D ET S   +             ++  +   +          H              
Sbjct: 371 VCLDTETTSIDPM----------QAQLVGLSLSVEPGQACYIPVAHRGPDVSGLEAAGQL 420

Query: 51  --PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               +   +K  LE+     V  +  ++  V      + +       T++ +        
Sbjct: 421 AREAVLARMKPWLEDASRKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 478

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                 A ++   K              E                     EY   D  +T
Sbjct: 479 HGMDALAERVLHLKTIT----------YEEVCGKGASQIGFDEVPLDRATEYAAEDADIT 528

Query: 169 REIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + + P               E     + Q +   G  +D       +  +     +
Sbjct: 529 LRLHRAMYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLGQRLLE 588

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L+Q+  +L      +    +++    F +  L +   T     +T + VL    +  P  
Sbjct: 589 LEQQAYALAGQP-FNLNSPKQIGEIFFTQLKLPVIKKTASGAPSTDEEVLQKLAEDYPLP 647

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             + + R   ++      + L + +N       T      + TGR +      QN+P  +
Sbjct: 648 KLLLDFR-GLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNLQNIPVRT 706

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A  G  +V AD + IE R++A ++
Sbjct: 707 EEGRR-------------------------IREAFVAPAGSVIVSADYSQIELRIMAHLS 741

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  L+AF  G+D++  T A  F V P +VT +QR   KV+   L Y   A        
Sbjct: 742 EDEGLLRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSA-----FGL 796

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
            + L +   A  +  +     +     +    +    E    +   G             
Sbjct: 797 ASNLGIGRDAAKLYIDRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLP-----DI 851

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +           +A       G A    K   + +        +        R+     V
Sbjct: 852 NGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQDWLDGSPSTGKPGAPMRTRQVMQV 911

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            +                                                +VL       
Sbjct: 912 HDE-----------------------------------------------LVL------- 917

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P  +       L  LM      A  +PL AE      +
Sbjct: 918 -EVPQEELSLVRERLPELMCGVA--ALRVPLVAEVGVGANW 955


>gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
          Length = 926

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/699 (15%), Positives = 191/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPLAHRGPDLPAQLPRDEVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 402 AKLTPWLEDASRKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++ + 
Sbjct: 460 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLDKASEYAAEDADITLQLHRA 509

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +     +L+QE  
Sbjct: 510 LYPQVAREPGLMRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAY 569

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 570 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 628

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N +     T      + TGR +      QN+P  +      
Sbjct: 629 R-GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 686

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G K+V AD + IE R++A ++ ++  L
Sbjct: 687 ------------------------IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLL 722

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 723 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 777

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +    ++    +    E    +   G          R     ++ 
Sbjct: 778 TRDAAKLYIDRYFLRYPGVAHYMEETRARAKERGYVETVFGR---------RLWLPEING 828

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 829 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 870

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 871 -------------RARM--------IMQ-------------VHDE---LVL--------E 885

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            PD +       L  +M         +PL AE    + +
Sbjct: 886 VPDGELSVVREKLPEMMCGVAK--LKVPLVAEVGVGENW 922


>gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
 gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170]
          Length = 924

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/719 (13%), Positives = 192/719 (26%), Gaps = 175/719 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL------ 57
           + ID ET S            A    ++  +              H     + L      
Sbjct: 328 VAIDTETDSLK----------ARRATLVGVSLAITPGRACYIPFAHGLRKAEGLDFDGAA 377

Query: 58  ----------------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
                            + L +  V  V HN  F+  VL      D+       T+VL+ 
Sbjct: 378 PPVANIEDKAAALALLGDLLRDPGVLKVGHNLKFDLHVLANAGLSDVAP--VDDTMVLSY 435

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                      G        ++     L  R    E             +        Y 
Sbjct: 436 VLD--------GTLHGHGMDELAGLH-LGRRTITFEEVCGKGKGQITFDQVPLDKAVAYA 486

Query: 162 KGDVTVTREIF----------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  ++            +    + ++ +  +   +   G  VD      L+   
Sbjct: 487 AEDADVTLRLYLLLRDRLLKEHMVRVHETLDRPMVRILTDMEAAGVRVDALRLKALSGDF 546

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT-----ETTCQRVLSSN 266
                 L+ ++ +L      +    ++L   LF E  L     +      +T  +VL   
Sbjct: 547 AKRMGDLEDQIHALAGHA-FNVASPKQLGEVLFEEMSLTGGKKSRKTGAWSTDAQVLDQL 605

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                       +  + ++      + LV  ++       T   L  + TGR S      
Sbjct: 606 AAEGHDLPARVLDWRQYAKLKGTYTDALVAEIDERTGRVHTTYGLTVTATGRLSSNDPNL 665

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  S +  +                         +R   IA+ G  L+ AD + IE 
Sbjct: 666 QNIPVRSEAGRK-------------------------IREAFIAAPGHLLISADYSQIEL 700

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++A +AG     +AF  G+D++  T ++ F V    +    R   K +           
Sbjct: 701 RLVAHVAGITALRQAFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAINF--------- 751

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  A +           
Sbjct: 752 -----GIIYGIS------------------------------AHGLAQQLGVGRPEAAAF 776

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             A+  +   +      + +                                 +  P GR
Sbjct: 777 ITAYFARFPEIRSYMETVKEEART--------------------------VGWVATPFGR 810

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGY 622
            +    + +             R+           +Q  + DI+   M+       +AG 
Sbjct: 811 RIPIPGIQDKNPA---ARAFAERQAINAP------IQGGAADIIKRAMIALPPALEQAGL 861

Query: 623 --DIVLTVHDEIVC-ETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
              ++L VHDE++        E  A+++  +M +  +         +PL+ +   +  +
Sbjct: 862 ATRMLLQVHDELIFEAPEAEAETAAALVKRVMETAVTLTDDQGERTVPLEVDTGIAASW 920


>gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205]
          Length = 985

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/712 (15%), Positives = 199/712 (27%), Gaps = 162/712 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD----------- 50
           + +D ET S                 ++     + +    +      H            
Sbjct: 392 VALDTETTSLNPF----------QAELVGLGVCWGEGLDQLAYIPLGHQAELSDPAQLPL 441

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--S 107
             +   L   L +        N+ ++R +L       +P+   +  TL+           
Sbjct: 442 DQVLGALAPWLSSAAHPKTLQNAKYDRLILLRH---GLPLAGVVMDTLLADYLRDANAKH 498

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L+ + +                       ++  L  +              YC  DV V
Sbjct: 499 GLELLAQR---------------NFGFLPTSYSELVPKGANFSAVPMAQAALYCGMDVHV 543

Query: 168 TREIFKRLEPLSS------------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           T  +   L                  E  L  +   +   G  +D      L++ +    
Sbjct: 544 TYRLTPLLRGQLEALGEPLTALLDQVELPLEPVLALMEATGIRIDTDYLGELSRELKATL 603

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270
            +L+ + +        +    ++L   LF   GL  +    T+   +T   VL   +   
Sbjct: 604 ERLESDAKEAAGTD-FNLASPKQLGELLFDTLGLDRKKSRKTKTGWSTDATVLEKLEDAH 662

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           P    V  +R   S+     ++ L   M    GR+         + TGR S      QN+
Sbjct: 663 PVVPLVLEHR-TLSKLKSTYVDALPALMEAETGRVHTDFNQAV-TATGRLSSSNPNLQNI 720

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +   G  L+ AD + IE R+L
Sbjct: 721 PVRTE-------------------------FSRRIRKAFLPEAGWTLISADYSQIELRIL 755

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++GE+  +KA+++G+D++  T    F     +VT D+R +GK +   + Y  G    Q
Sbjct: 756 AHLSGEEVLVKAYQSGDDVHALTARLLF--DKDEVTSDERRLGKTINFGVIYGMGV---Q 810

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           + A  TG++          +   + +     F    +         +  +G         
Sbjct: 811 RFARETGVS--QAEAKEFLSKYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFAFD- 867

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                  +     K+ L + L   R   
Sbjct: 868 ------------------------------------PSGLGRHLGKDPLEIELEVARR-- 889

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
                           Q  R            +Q  S DI+   M+   +          
Sbjct: 890 -----------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQQRLTESALPAR 932

Query: 624 IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE+V E           L    M    +    +PL  E      + 
Sbjct: 933 LLLQVHDELVLEAAPEALETVLNLTRETMERAVT--LSVPLVVETGVGPNWM 982


>gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE]
 gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE]
          Length = 930

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/700 (14%), Positives = 199/700 (28%), Gaps = 155/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 354 KLIAVDTETDSLDYIS----------ANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN ++  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 627

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 688 EGRR-------------------------IRQAFIAHEGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A        +
Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 777

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++        +   + +   + F   ++         +   G              
Sbjct: 778 RQLGISRLDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 837

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +        G A    KR  + +  +                    D+ 
Sbjct: 838 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 876

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                   E I+Q                            +V 
Sbjct: 877 ------------------------EMIMQ-------------VHDE-----------LVF 888

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E   +   F    +   M +       +PL  E    + +
Sbjct: 889 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926


>gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96]
 gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163]
          Length = 929

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/701 (15%), Positives = 204/701 (29%), Gaps = 160/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L+            +I  +F             HD            + 
Sbjct: 353 AFDLETDSLDTLS----------ANIIGLSFATAPGEAAYLPVAHDYLDAPEQLDRSDVL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F+R VLK   ++++   R   T++ + +         +  
Sbjct: 403 ARLKPLLEDPQAQKVGQNLKFDRGVLKRY-DIELQGIR-FDTMLESYALNSVAGRHDMDT 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L  +    E            ++ A      Y   D  VT ++
Sbjct: 461 LASR------------WLNHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   KEQ            L  +   I   G  +D  +  T +Q +     +L+ 
Sbjct: 509 HVKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDPGILATHSQELGSRLAELEL 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+T LF + G+     T     +T + VL+      P    +
Sbjct: 569 KAHELAG-EPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEHR-GLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA +G ++V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPQGHRIVAADYSQIELRIMAHLSQDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF + +D++  T A  F V+  +V+ +QR   K +   L Y   A        +  
Sbjct: 722 GLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSA-----FGLSRQ 776

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           LN+         +   E +     +    +E   +        G          R     
Sbjct: 777 LNIGAGEAKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGR---------RLYLPD 827

Query: 517 VSE----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +            +A       G A    KR  + +    + + +  + +          
Sbjct: 828 IKASNAMRRKAAERAAINAPMQGTAADIIKRAMIAVDRWLEQQPSPEVKM---------- 877

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                                       I+Q                    +V  VH   
Sbjct: 878 ----------------------------IMQ-------------VHDE---LVFEVH--- 890

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                D  E   + +  LM  +      +PL+ +      +
Sbjct: 891 ----ADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 925


>gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG]
 gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG]
          Length = 930

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/700 (14%), Positives = 199/700 (28%), Gaps = 155/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 354 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN ++  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 569

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 627

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA +G  +V AD + IE R++A ++G
Sbjct: 688 EGRR-------------------------IRQAFIARKGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A        +
Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 777

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++        N   + +   + F   ++         +   G              
Sbjct: 778 RQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 837

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +        G A    KR  + +  +                    D+ 
Sbjct: 838 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 876

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                   E I+Q                            +V 
Sbjct: 877 ------------------------EMIMQ-------------VHDE-----------LVF 888

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E   +   F    +   M +       +PL  E    + +
Sbjct: 889 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926


>gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
 gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758]
          Length = 932

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 198/699 (28%), Gaps = 156/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +D+       T++ +           + +
Sbjct: 406 ATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIA-FDTMLESYVLDSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G  ++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPKGYCIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  G+D++  T A  F     +VT +QR   K +   L Y   A          
Sbjct: 724 NGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +   E +     +    ++   E        G          R  + 
Sbjct: 779 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +   ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH      
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH------ 893

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++   +A   +  LM  +   A  +PLK +      +
Sbjct: 894 --ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928


>gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215]
          Length = 923

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   L +     +  +  ++  VL     + +       TL+ +              
Sbjct: 399 AKLTPWLGDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 457 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 506

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 507 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAY 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 567 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 625

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 626 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 683

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 684 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 719

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 720 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 774

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 775 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 825

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 826 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 867

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 868 -------------RARM--------IMQ-------------VHDE---LVL--------E 882

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919


>gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
 gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973]
          Length = 920

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/692 (14%), Positives = 194/692 (28%), Gaps = 145/692 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLK 58
           T+ ID ET S           YA D  ++  +F  ++          D      +  + K
Sbjct: 349 TVSIDTETTSL----------YAMDAELVGLSFAVEERQAFYVPVPADRKEAEKIVNIFK 398

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
              E+  +  V  N  ++  VL+    + +       T++                 L+ 
Sbjct: 399 PLYESEAIMKVGQNMKYDLEVLRNY-GVCLR-GALFDTMIAHYLIQP---------ELRH 447

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   M E                     K     +     EY   D  +T ++   LEP 
Sbjct: 448 NMDYMAEVYLNYQTIHIDTLIGAKGKHQKSMRELSPAQVYEYAAEDADITLQLKNVLEPK 507

Query: 179 S----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L  +   +   G  +D       + I+      L+  +  L  G
Sbjct: 508 LREVEAEELFYQIEMPLVPVLAEMEMNGVRIDTQSLKETSDILTRRMHDLEARIYELAGG 567

Query: 229 LVSSSRCLEKLKTWLFLETG-LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +    +++   LF     +     T+T    T + VL   +        + + R   
Sbjct: 568 -EFNIASPKQVGDMLFGRMKIIDKPKKTKTGQYVTSEEVLQQLRGKHEIVGDILDYR-GL 625

Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            +     ++ L + +N+  GR+  +      + TGR S      QN+P      +E    
Sbjct: 626 KKLLGTYVDALPKLINTRTGRIHTSFNQ-TVTATGRLSSSEPNLQNIPVRGEDGKE---- 680

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R   I  EG     AD + IE RV+A ++G+   ++AF
Sbjct: 681 ---------------------IRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAHMIEAF 719

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++  T A+ +  A   VT+D+R   K     + Y               L+++  
Sbjct: 720 REGYDIHAATAAKIYGRAVEDVTRDERTKAKRANFGIIYGITV-----FGLAERLDIDRN 774

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 +     +   +++    +E    H   +                          
Sbjct: 775 EAKQLIDGYFMMFPQVKDYMEHSKEVARTHGYVETIF----------------------- 811

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                              +RR +P +              +        +         
Sbjct: 812 ------------------HRRRYLPDINSHNATVRGFAERNA--------INAPIQGSAA 845

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
              ++     Y   + E I                      ++L VHDE+       ++ 
Sbjct: 846 DIIKVAMIRIYRRFMKEGI-------------------RSKMILQVHDELNFSVFPEEKE 886

Query: 643 NASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               +    M     +   +PL A+      +
Sbjct: 887 RVERIVMEEMQQA--YPLRVPLVADSGWGTNW 916


>gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586]
 gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586]
          Length = 929

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 196/701 (27%), Gaps = 161/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     LT            ++  +              HD            + 
Sbjct: 354 SFDTETDGLDTLT----------ANLVGISLAIKPGEAAYLPLGHDYLDAPTQLDRDTVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LEN  +  +  N  F++ V+     +D+       T++ +           + +
Sbjct: 404 AQLKPLLENEAIGKIGQNLKFDKGVMARY-GIDLRGI-VFDTMLESYVLDSVAGRHDMDS 461

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++        Y   D  VT  +
Sbjct: 462 LSERY------------LQHKTITFEEIAGKGKNQLTFNQIPLEQAAVYAAEDADVTLRL 509

Query: 172 FKRLEPLSSKEQELW-----------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L      +QEL             +   +   G  +D  +    +Q +     +L+ 
Sbjct: 510 HETLWAKLEPQQELCQVFKNIDMPLVPVLSRMERTGVLIDTTILAEHSQELTQRLAELEV 569

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
               L      +    ++L   L+ +  L +   T     +T + VL+      P    +
Sbjct: 570 RAHELAG-EAFNLASPKQLGAILYEKLQLPVIKKTPKGAPSTNEEVLAELALDHPLPKLI 628

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   ++      + L + +N   +   T      + TGR S      QN+P  +   
Sbjct: 629 LEHR-ELAKLKSTYTDKLPQMINPLTKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEG 687

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA +G +++ AD + IE R++A ++ + 
Sbjct: 688 RR-------------------------IRQAFIAPQGYQILAADYSQIELRIMAHLSRDA 722

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF  G D++  T A  F +   +VT +QR   K +   L Y   A        +  
Sbjct: 723 GLLKAFSDGLDIHRATAAEVFGLPLDKVTTEQRRSAKAINFGLIYGMSA-----FGLSRQ 777

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +         N   E +   + +    ++   +        G          R   SR
Sbjct: 778 LGIARNEAQKYMNLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLYLPDIHSRNAMSR 837

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +A       G A    K+  + +    + +  L  ML              
Sbjct: 838 -----KAAERAAINAPMQGTAADIIKKAMIAIDDWLQQEKPLATML-------------- 878

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH----DEI 632
                                    +Q                    +V  VH    DE+
Sbjct: 879 -------------------------MQ-------------VHDE---LVFEVHHSVLDEV 897

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                      ++ + +LM         +PL+ +      +
Sbjct: 898 -----------SAKIRNLMEGCMQ--LDVPLQVDIGTGSNW 925


>gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
 gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236]
          Length = 932

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 107/698 (15%), Positives = 202/698 (28%), Gaps = 154/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSSN----------LIGMSFAVAPGEAAYLPLAHDYLDAPAQLDRNWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LEN     V  N  F++++L     +++       T++ +           + +
Sbjct: 406 ATLKPLLENEKALKVGQNLKFDQSMLARY-GIELRGIA-FDTMLESYVLDSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G +++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPKGYRIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A          
Sbjct: 724 KGLLAAFAAGKDIHRATAAEVFGMPLESVTNEQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+         +   E +     +    ++   E        G          R  + 
Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGGLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +   ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH E V E
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + +        +  LM  +   A  +PLK +      +
Sbjct: 899 SAE------QKIRDLMEQSMQLA--VPLKVDVGVGYNW 928


>gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10]
 gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92]
 gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10]
 gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua]
 gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92]
 gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125]
 gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516]
 gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195]
 gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004]
 gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27]
 gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003]
 gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 932

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 198/699 (28%), Gaps = 156/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +D+       T++ +           + +
Sbjct: 406 ATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIA-FDTMLESYVLDSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G  ++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPKGYCIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  G+D++  T A  F     +VT +QR   K +   L Y   A          
Sbjct: 724 NGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +   E +     +    ++   E        G          R  + 
Sbjct: 779 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +   ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH      
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH------ 893

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++   +A   +  LM  +   A  +PLK +      +
Sbjct: 894 --ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928


>gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3]
 gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3]
          Length = 916

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/701 (14%), Positives = 205/701 (29%), Gaps = 154/701 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP-- 54
             + ID ET S           Y E   ++  +F  +          HD       +   
Sbjct: 337 DLIAIDTETTSLN---------YME-AELVGISFAVEAGKAAYLPLSHDYVDAPEQLDKA 386

Query: 55  ---QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
              + L   LEN  +  V  N  ++ ++      + +   +   T++ +           
Sbjct: 387 LVFEKLTPLLENEAIKKVGQNLKYDISIFANA-GIKLKGVQ-FDTMLESYVFNSVASKHN 444

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  +             G + I+     E       +    ++        Y   D  +T
Sbjct: 445 MDDLALKY--------LGHKNISF----EEIAGKGAKQLTFNQIPLETAAPYAAEDADIT 492

Query: 169 REIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L P               E  L  +  TI  +G  +D  L    ++ +  +   
Sbjct: 493 LRLHQHLWPRLEKLPQLASVFTDIELPLIDILSTIERQGVLIDSMLLGQQSEELARKIDD 552

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L  +   +      +    ++L+   F + G  +   T     +T + VL       P  
Sbjct: 553 LQTKAHEIAGQP-FNLASPKQLQELFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPLP 611

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +  +R   ++      + L   +N   GR+  +     A+ TGR S      QN+P  
Sbjct: 612 KIILEHR-SLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANAA-TGRLSSSEPNLQNIPIR 669

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R   IA EG+K++ AD + IE R++A +
Sbjct: 670 TEEGRR-------------------------IRHAFIAPEGRKILAADYSQIELRIMAHL 704

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F+V  ++VT DQR   K +   L Y   A       
Sbjct: 705 SQDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSA-----FG 759

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               L++         ++  + +    N+    +    +        G          R 
Sbjct: 760 LAKQLDIPRAEAQRYIDTYFKRYPGVLNYMEETRAIATDLGYVSTLFGRRLYLPAIKDRN 819

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              R         +A       G A    K+  + +    + + N  + +          
Sbjct: 820 AMRR-----QAAERAAINAPMQGTAADIIKKAMINVAKWIETETNGEITMIM-------Q 867

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           V +   +                                   ++A KA     L V    
Sbjct: 868 VHDELVFE----------------------------------VDADKADS---LQV---- 886

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                         +  LM +  +    + L AE      +
Sbjct: 887 -------------KICELMAAAAT--LDVELLAEAGIGDNW 912


>gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
 gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC
           43183]
          Length = 952

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 201/694 (28%), Gaps = 148/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            L ID ET     +          +  ++  +F   ++         +      +    +
Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSDAENQAYYVPVPANRDEALKIVNEFR 429

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN +   V  N  ++  VL+    + +   +   T++            +  + E  
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVK-GKLFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +     ELI                K            Y   D  VT ++   LE
Sbjct: 488 LH--YQTIHIDELIG---------AKGKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLE 536

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       ++   +   ++++E+ +L 
Sbjct: 537 KELKEHAAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALA 596

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
            G   +    +++   LF    +      T+T    T + VL S +       ++   R 
Sbjct: 597 GGETFNIGSPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYR- 655

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N   GR+  +      + TGR S      QN+P      +E  
Sbjct: 656 GLKKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE-- 712

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I  +G +   AD + IE R++A ++ ++  + 
Sbjct: 713 -----------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMID 749

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ + V    VT D R   K     + Y               +N+ 
Sbjct: 750 AFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISV-----FGLAERMNVP 804

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +   E +   + +     +   E+   +       +R       +++ V   
Sbjct: 805 RQEAKELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHR--KRFLPDINSRNAVVRGY 862

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +        G A    K                        SL+Y+ + +N    
Sbjct: 863 ---AERNAINAPIQGSAADIIKV---------------------AMSLIYQRLQSNN--- 895

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                                        L   M+          L VHDE+    P+ +
Sbjct: 896 -----------------------------LKAKMI----------LQVHDELNFSVPEAE 916

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M     +   +PLKA+    K +
Sbjct: 917 KEIIQKIVIEEMERA--YRMLVPLKADFGWGKNW 948


>gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1]
 gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846]
          Length = 930

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/700 (14%), Positives = 199/700 (28%), Gaps = 155/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 354 KLIAVDTETDSLDYIS----------ANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN ++  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 627

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 688 EGRR-------------------------IRQAFIAHEGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A        +
Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 777

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++        +   + +   + F   ++         +   G              
Sbjct: 778 RQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 837

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +        G A    KR  + +  +                    D+ 
Sbjct: 838 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 876

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                   E I+Q                            +V 
Sbjct: 877 ------------------------EMIMQ-------------VHDE-----------LVF 888

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E   +   F    +   M +       +PL  E    + +
Sbjct: 889 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926


>gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
 gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574]
          Length = 920

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/695 (13%), Positives = 199/695 (28%), Gaps = 149/695 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPV---MPQVL 57
             L +D ET S   +          +  ++  +F  ++          +      +  + 
Sbjct: 348 KILSLDTETTSTNAI----------EAELVGLSFAVEERKAFYVAIPANREEALKIVAIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   E+ ++  V  N  ++  VL   + +++       T++            +  + E 
Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVL-RHYGVEVA-GPMFDTMIAHYLLQPELRHNMDYMAEV 455

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +    +ELI              R+            EY   D  +T  +   L
Sbjct: 456 Y--LGYRTVHIEELI----GPRGRNQKNMRDLSPTDI-----YEYACEDADITLRLKNVL 504

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L  +   +   G C+D    H  +++ +   T ++Q +  L
Sbjct: 505 EPKLDEAGVARLFHDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTTIEQHIYEL 564

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +     ++   LF +  +      T+T    T + VL   +  +P   ++ N R
Sbjct: 565 AG-EQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEILNYR 623

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P      +E 
Sbjct: 624 -GLKKLLSTYVDALPKLINPRTGRIHTSFNQ-TVTATGRLSSSDPNLQNIPVRDDDGKE- 680

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R C I   G     AD + IE R++A ++ ++  +
Sbjct: 681 ------------------------IRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMI 716

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T AR ++    +VT  +R   K     + Y               +++
Sbjct: 717 EAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYG-----ITTYGLAQRMDI 771

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +     +   E +    +E   +    +        R        ++ V  
Sbjct: 772 SNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHR--RRYLPDINSHNATVRG 829

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G      K   V +                 R      + +    
Sbjct: 830 F---AERNAINAPIQGSEADIIKVAMVRIH----------------RRFKAEGIRSK--- 867

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                                             M+          L VHDE+       
Sbjct: 868 ----------------------------------MI----------LQVHDELNFSVFPE 883

Query: 640 DEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +    M     +   +PL A+    K +
Sbjct: 884 EKEQVERIVVEEMQGA--YKLRVPLVADAGWGKNW 916


>gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola]
 gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A]
 gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001]
 gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F]
 gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola]
 gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII]
 gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A]
          Length = 932

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 198/699 (28%), Gaps = 156/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +D+       T++ +           + +
Sbjct: 406 ATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIA-FDTMLESYVLDSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G  ++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPKGYCIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  G+D++  T A  F     +VT +QR   K +   L Y   A          
Sbjct: 724 NGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +   E +     +    ++   E        G          R  + 
Sbjct: 779 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +   ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH      
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH------ 893

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++   +A   +  LM  +   A  +PLK +      +
Sbjct: 894 --ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928


>gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
 gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM
           17393]
          Length = 941

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/697 (13%), Positives = 196/697 (28%), Gaps = 149/697 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L ID ET S   +          +  ++  +F   ++         +      +    
Sbjct: 369 KILSIDTETTSAEPM----------EAELVGMSFSDTENQAYYVPVPPEREEALKIVNEF 418

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN +   V  N  ++  VL+    +++       T++            +  + E 
Sbjct: 419 RPLYENENSMKVGQNIKYDILVLQNY-GVEVK-GELFDTMLAHYVLQPELRHNMDYLAEI 476

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K           +Y   D  +T ++   L
Sbjct: 477 YLH--YQTIHIDELIG---------PKGKNQKNMRDLPPEEVYKYACEDADITLKLKNVL 525

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   +   G  +D       ++   V   ++++E+  L
Sbjct: 526 EEELKKQGVEHLFYEIEMPLVRVLANMESNGVRIDTETLKQTSEHFTVRLQEIEKEIYEL 585

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +       ++   R
Sbjct: 586 AG-ETFNIASPKQVGEILFDKLKIIDKAKKTKTGQYVTSEEVLESLRNKHEVIGKILEYR 644

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L   +N   GR+  +      + TGR S      QN+P      +E 
Sbjct: 645 -GLKKLLGTYVDALPLLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE- 701

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  +  +   AD + IE R++A ++ ++  +
Sbjct: 702 ------------------------IRKAFIPDDDCEFFSADYSQIELRIMAHLSEDKNMI 737

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +G D++  T A+ + +    VT D R   K     + Y               +N+
Sbjct: 738 DAFLSGYDIHAATAAKIYKIDIKDVTPDMRRKAKTANFGIIYGISI-----FGLAERMNV 792

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +     +     +   E    +       +R       +++ V  
Sbjct: 793 DRKEAKELIDGYFETYPQVREYMDKSIQVAREQGYVETIFHR--KRFLPDINSRNATVRG 850

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A    K                                     
Sbjct: 851 Y---AERNAINAPIQGSAADIIKV------------------------------------ 871

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                R   R  +Y  K                 M+          L VHDE+    P+ 
Sbjct: 872 --AMARIYERFQSYKLKAK---------------MI----------LQVHDELNFSVPEA 904

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++     +    M     +   +PL+A+    K + K
Sbjct: 905 EKEFVQQIVIEEMERA--YRMHVPLRADCGWGKNWLK 939


>gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei]
          Length = 615

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 187/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 41  AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 90

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 91  AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 148

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 149 ALRHLGVKTI----------KYEDVAGQGAQQIGFDEVPLAQAFEYAAEDADITLQLHHA 198

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 199 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 258

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 259 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 317

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 318 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 375

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++  ++ ++  L
Sbjct: 376 ------------------------IREAFVAPPGSKIVSADYSQIELRIMLHISEDESLL 411

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 412 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 466

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 467 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 517

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 518 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 559

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 560 -------------RARM--------IMQ-------------VHDE---LVL--------E 574

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 575 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 611


>gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
 gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313]
          Length = 986

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/716 (15%), Positives = 207/716 (28%), Gaps = 161/716 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD--------- 50
             + ID ET +                 ++     + +    +      H          
Sbjct: 386 KPVAIDTETTALNPFC----------AELVGLGVCWGEGLQDLAYIPIGHHPPAALLDAD 435

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                    + + +   L + D      N+ ++R +L     L +     + TL+     
Sbjct: 436 AACQLPLEAVLKAIAPWLASNDHPKALQNAKYDRLILLRH-GLALE-GVVMDTLLADY-- 491

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                L+       L      E K              L  + +     A      YC  
Sbjct: 492 -----LRDAAAKHGLEVMAEREFK------ITPTGFSELVGKGQTFADVAIPTASLYCGM 540

Query: 164 DVTVTREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIV 211
           DV +TR +  RL                   Q L  +   +   G  +D+     L+  +
Sbjct: 541 DVHLTRRLAIRLRAQLENMGAQLLPLLEQVEQPLEPVLALMEATGIRIDLPYLKELSIEL 600

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSSN 266
                KL+Q+ +        +    ++L   LF   GL+ +         +T   VL   
Sbjct: 601 GNTLEKLEQQAQEAAGV-NFNLASPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKL 659

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFP 325
           +   P    V  +R+  S+     ++ L + + +  GR+         + TGR S     
Sbjct: 660 EADHPVVPLVLEHRV-LSKLRSTYVDALPQLVESETGRVHTDFNQAV-TATGRLSSSNPN 717

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +                           S  +R   +  E  KL+ AD + IE
Sbjct: 718 LQNIPIRTE-------------------------FSRRIRKAFLPQENWKLLSADYSQIE 752

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+L  ++GE+   +AF  G+D++  T      +   +V++D+R +GK +   + Y  GA
Sbjct: 753 LRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSEDERRLGKTINFGVIYGMGA 810

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
           + F +        L+        +   + +     F    +         +  +G     
Sbjct: 811 QRFSR-----STGLSQAEAKDFLSRYKQRYAKVFTFLELQERLALSKGYVETLLG----- 860

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                                                 R  P  + +     L+   P  
Sbjct: 861 --------------------------------------RRRPFHFDRNGLGRLLGKDPM- 881

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------K 619
                 D+  + +       Q  R            +Q  S DI+   M+          
Sbjct: 882 ------DIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQQQLTAAD 929

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
               ++L VHDE+V E   T   +   L    M         +PL  E      + 
Sbjct: 930 LPARLLLQVHDELVLEVDPTALEDVQQLVMQTMEKAVE--LSVPLVVETGTGDNWM 983


>gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17]
 gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17]
          Length = 920

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/695 (13%), Positives = 199/695 (28%), Gaps = 149/695 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPV---MPQVL 57
             L +D ET S   +          +  ++  +F  ++          +      +  + 
Sbjct: 348 KILSLDTETTSTNAI----------EAELVGLSFAVEERKAFYVVIPANREEALKIVAIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   E+ ++  V  N  ++  VL   + +++       T++            +  + E 
Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVL-RHYGVEVA-GPMFDTMIAHYLLQPELRHNMDYMAEV 455

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +    +ELI              R+            EY   D  +T  +   L
Sbjct: 456 Y--LGYRTVHIEELI----GPRGRNQKNMRDLSPTDI-----YEYACEDADITLRLKNVL 504

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L  +   +   G C+D    H  +++ +   T ++Q +  L
Sbjct: 505 EPKLDEAGVARLFRDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTAIEQHIYEL 564

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +     ++   LF +  +      T+T    T + VL   +  +P   ++ N R
Sbjct: 565 AG-EQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEILNYR 623

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P      +E 
Sbjct: 624 -GLKKLLSTYVDALPKLINPRTGRIHTSFNQ-TVTATGRLSSSDPNLQNIPVRDDDGKE- 680

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R C I   G     AD + IE R++A ++ ++  +
Sbjct: 681 ------------------------IRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENMI 716

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T AR ++    +VT  +R   K     + Y               +++
Sbjct: 717 EAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYG-----ITTYGLAQRMDI 771

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +     +   E +    +E   +    +        R        ++ V  
Sbjct: 772 SNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHR--RRYLPDINSHNATVRG 829

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G      K   V +                 R      + +    
Sbjct: 830 F---AERNAINAPIQGSEADIIKVAMVRIH----------------RRFKAEGIRSK--- 867

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                                             M+          L VHDE+       
Sbjct: 868 ----------------------------------MI----------LQVHDELNFSVFPE 883

Query: 640 DEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +    M     +   +PL A+    K +
Sbjct: 884 EKEQVERIVVEEMQGA--YKLRVPLVADAGWGKNW 916


>gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402]
          Length = 944

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/707 (15%), Positives = 210/707 (29%), Gaps = 172/707 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQ--VL 57
             D ET S   L          +  V  F+    +     +             P+    
Sbjct: 370 AYDCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAF 419

Query: 58  KEA------LENTDVTIVAHNSYFERTV-LKACFNLDIPIHRWICTLVLARSNGL---PS 107
           K+A      L ++ +T++ HN  F+    L +     I       T++ A          
Sbjct: 420 KDAQRAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGIS-ANLFDTMIAAWLLDPARSSY 478

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            +  + E+  +   K    K+L+                +            Y   D  +
Sbjct: 479 GMDKLAES--ILGVKTIRFKDLVKTG-------------QNFSDIPLNEACPYAAEDADI 523

Query: 168 TREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           T   +K+  PL  K             +  L   +  +G  +        ++ +  E   
Sbjct: 524 TFRFYKKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELED 583

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274
            ++++  L      +    ++L+  LF E  L     T+   +T   VL +     P   
Sbjct: 584 CEKDIYRLVGH-EFNIASPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPA 642

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++ + R   ++      +TL +  + +GR+  +    G + TGR S      QN+P    
Sbjct: 643 KILDYR-ALAKLKSTYTDTLPKMTDKNGRIHTSFIQTG-TATGRLSSRDPNLQNIPIRGN 700

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
              +                         +R    A +G+ L+ AD + IE  +LA ++ 
Sbjct: 701 EGRK-------------------------IREAFQAEKGRVLISADYSQIELVILAHLSK 735

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  ++AF  G D++  T +  F V    V++D R I K +                   
Sbjct: 736 DQNLVEAFNKGIDVHAKTASLIFAVDIKDVSQDMRRIAKTIN--------------FGVM 781

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  A          +   KA+   +
Sbjct: 782 YGMS------------------------------AFRLASSLRIPRKRADEFIKAYFATY 811

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           S VS    ++ Q  EQ                             +    GR      + 
Sbjct: 812 SGVSGFMAQVCQEAEQ--------------------------RGYVETLMGRRRYLPAIN 845

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
           +             R            +Q  + DI+   M+   KA         I+L V
Sbjct: 846 SKNKVEK---AGAERIA------VNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQV 896

Query: 629 HDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           HDE++ E  +++ E   S++   M         +PL+        + 
Sbjct: 897 HDELIIEAAESEREKVMSLVKEKMEGVIK--LSVPLRVSIESGMSWG 941


>gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4]
 gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4]
          Length = 992

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/718 (13%), Positives = 194/718 (27%), Gaps = 169/718 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHD---- 50
           +  D ET S   +             ++  +    D+                 H     
Sbjct: 392 VAFDTETTSLDPM----------QADLVGVSLALQDNAASPGAATIRAAYVPLGHKTGRD 441

Query: 51  ----------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
                                 LK  LE+  V  VA N  ++  V+K      I I  + 
Sbjct: 442 DLFSDGLKLAENQIPMDAALTALKGLLEDASVLKVAQNLKYDYLVMKRH---GIVIRGFD 498

Query: 95  CTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
            T++L+           + ++ E           G   I      +              
Sbjct: 499 DTMLLSYVLEAGVGAHGMDSLSERW--------LGHTPIPY----KEVAGSGKSLVTFDL 546

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDV 201
                   Y   D  VT  ++  L+P              E+ L  +   + +RG  +D 
Sbjct: 547 VDIDKATAYAAEDADVTLRLWLVLKPRLAAVGLARVYERLERPLVPVLADMEERGITIDR 606

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----T 257
            +   L+  +  +    + E+  L      +    ++L   LF    L     T+    +
Sbjct: 607 QILSRLSGELAQKAAAFEDEIYELAG-ERFNVGSPKQLGDILFGRMNLPGGSKTKTGQWS 665

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T  +VL           +   +  + ++      + L   ++   +   T   + A+ TG
Sbjct: 666 TSAQVLEDLAAQGEPLPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYSMAATTTG 725

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P  +    +                         +R+  I++ G KL+
Sbjct: 726 RLSSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLL 760

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +A      +AF  G D++  T +  F V    +  + R   K +  
Sbjct: 761 SADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEVRRRAKAINF 820

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y   A           L++             E +   +++    +    EH   + 
Sbjct: 821 GIIYGISA-----FGLANQLSIERAEAGEYIKKYFERFPGIKDYMESTKAFVREHGYVET 875

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
             G          +  +  +        +A       G A    +R  V +         
Sbjct: 876 IFGRRAHYP--EIKSSNPSMRAFN---ERAAINAPIQGSAADVIRRAMVQVEPALAKAGL 930

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                                                                   ++  
Sbjct: 931 GEKT--------------------------------------------------RMLLQV 940

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
                 ++  V DE +       E    ++   M +   P+ A  +PLK +   +  +
Sbjct: 941 HDE---LIFEVEDEAI-------EAALPVIVSTMENAAMPAIAMRVPLKVDARAADNW 988


>gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107]
 gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107]
          Length = 998

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/714 (15%), Positives = 210/714 (29%), Gaps = 161/714 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHD----------- 50
           + ID ET                   ++     +   +  +      H            
Sbjct: 400 IAIDTETTDLNPFK----------AELVGVGVCWGEANDALAYIPIGHKPPSELTEATPP 449

Query: 51  -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                  +   L   L +        N+ ++R +L     L +     I TL+       
Sbjct: 450 QQLPLETVLMALSPWLASPQHPKALQNAKYDRLILLRH-GLTLN-GVVIDTLLADY---- 503

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              L+       L      E         +  T+  L  + +            YC  DV
Sbjct: 504 ---LRDAAAKHGLDVMSERE------FGFRPTTYGDLVGKKQTFADVEIEPASLYCGMDV 554

Query: 166 TVTREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
            VTR +  +L                   Q L  +   +   G  +DV    TL+  +  
Sbjct: 555 HVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLSDELGS 614

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKK 268
              +L+ E + +      +    ++L   LF   GL  +    T+   +T   VL   + 
Sbjct: 615 TLNRLETEAKQVAEVD-FNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLEH 673

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
             P    V  +R+  S+     ++ L + +    GR+         + TGR S      Q
Sbjct: 674 DHPVVPLVLEHRV-LSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQ 731

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +                           S  +R   +  EG  L+ AD + IE R
Sbjct: 732 NIPVRTE-------------------------YSRRIRKAFLPQEGWTLLSADYSQIELR 766

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +L  ++GE+   +A+ TG+D++  T      +   +V+ DQR +GK +   + Y  GA  
Sbjct: 767 ILTHLSGEEVLQEAYRTGDDVHALTARLL--LDKDEVSADQRRLGKTINFGVIYGMGA-- 822

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            Q+ A  TG++  +           + +     F    +         +  +G       
Sbjct: 823 -QRFARETGVS--SAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILG------- 872

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
                                               R  P  + +     L+   P    
Sbjct: 873 ------------------------------------RRRPFHFDRNGLGRLLGKDPL--- 893

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
               ++  + +       Q  R            +Q  S DI+   M+            
Sbjct: 894 ----EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAMLLSQGIP 943

Query: 622 YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             ++L VHDE+V E           ++ + M +       +PL  E    + + 
Sbjct: 944 ARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAIK--LSVPLVVETGVGRDWM 995


>gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
 gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116]
          Length = 930

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 198/700 (28%), Gaps = 155/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 354 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN +   +  N  F+ ++      +++       T++L+ +        +
Sbjct: 404 TALAAIKPILENPNSHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 569

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 627

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 688 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A        +
Sbjct: 723 DQGLISAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 777

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++        N   + +   + F   ++         +   G              
Sbjct: 778 RQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 837

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +        G A    KR  + +  +                    D+ 
Sbjct: 838 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 876

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                   E I+Q                            +V 
Sbjct: 877 ------------------------EMIMQ-------------VHDE-----------LVF 888

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E   +   F    +   M +       +PL  E    K +
Sbjct: 889 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 926


>gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 932

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 198/699 (28%), Gaps = 156/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +D+       T++ +           + +
Sbjct: 406 ATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIA-FDTMLESYVLDSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERAGVLIDQNILAAHSKELTIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G  ++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPKGYCIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  G+D++  T A  F     +VT +QR   K +   L Y   A          
Sbjct: 724 NGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +   E +     +    ++   E        G          R  + 
Sbjct: 779 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +   ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH      
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH------ 893

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++   +A   +  LM  +   A  +PLK +      +
Sbjct: 894 --ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928


>gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1]
 gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1]
          Length = 965

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 115/711 (16%), Positives = 206/711 (28%), Gaps = 175/711 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQV 56
             D ETR    L             ++  A              H           +   
Sbjct: 381 AFDTETRGTNPLRD----------DLVGIALATIPGSGWYVPLGHTTGEAQLPRERVIAA 430

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115
           L+    +   + +AHN+ F+  VL+      IP+      T++ A        LK +   
Sbjct: 431 LRPFFADPARSRIAHNAKFDIEVLERA---GIPVAGVAFDTMLAAALLDKRRNLKDLAFY 487

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
               +  +E  + LI                             Y   D  +T  +   L
Sbjct: 488 ELNLAAPLESIEALI----------GKGKNQVTFADVPIARATPYAAADADMTLRLKPAL 537

Query: 176 EPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           E                E  L  +   +   G  +DV     L + +  E  +++Q++ +
Sbjct: 538 EAKLRAAGSVADVFYRLEMPLVPVLVRMEQAGILLDVPYMRALGERMGRELEQIEQQIYA 597

Query: 225 LTYGLVSSSRCLEKLKTWLFL-ETGLHLE------DLTETTCQRVLSSN--KKLTPQAIQ 275
           +      +    ++L   LF  +  L             +   + L        T     
Sbjct: 598 IAGQT-FNINSGDQLSEVLFGPKINLPTTGLDRTRTGRYSLTAQALEELQASDTTGIIEL 656

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   S+     ++ L   +N + GR+      LGA+ TGR S      QN+P  + 
Sbjct: 657 ILRHRR-LSKLKSTYVDELPALVNPETGRVHTDYNQLGAA-TGRLSSNSPNLQNIPTRTE 714

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
              E                         VR   IA+ G  L+ AD + IE RVLA M G
Sbjct: 715 EGRE-------------------------VRRGFIAAPGHLLIAADYSQIELRVLAHMTG 749

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   ++ F  G D++  T AR F V  + V K+QR I K +   + Y             
Sbjct: 750 DPNLIQTFIEGRDIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVIY-----GISPFGLA 804

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L                                                +  +   + 
Sbjct: 805 QRL---------------------------------------GISREQARGLIDSLFDQF 825

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R+ +    + +  +     G                        +    GR     D+ 
Sbjct: 826 PRIRDY---IDRTLDIGRSEGY-----------------------VQSLFGRRRPMFDLR 859

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
            +        +   RE           +Q+ + DI+   M+              ++L V
Sbjct: 860 VS----GPRRQAAEREAINHP------IQSTAADIMKLAMIAVDAELQRRQMRTRMLLQV 909

Query: 629 HDEIVCETPDTDEFN-ASMLYHLMTSN-----PSWAKGLPLKAEGYESKRY 673
           HDE++ E P+ +  +  +++   M        P +A  +PL+ E      +
Sbjct: 910 HDELIFEAPEAEVDDVVALVRERMEGVLHGMEPPFA--VPLRVEIETGPNW 958


>gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421]
 gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421]
          Length = 938

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/696 (14%), Positives = 189/696 (27%), Gaps = 165/696 (23%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKE 59
           D ET +                 ++     ++          H          +   L  
Sbjct: 375 DTETNNLDP----------RHARLVGIGCAWEPGVAYYLPLAHQQGSNLETDAVVAALTP 424

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
             ++ +   V  N+ ++  VL+    + +        ++ +           +  A    
Sbjct: 425 YWQDRERPKVLQNAKYDWLVLRNY-GVALAGIA-FDPMLASYVLDPEGKHNLMTLAQNHL 482

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              M   + L+              + +            YC  D  VT  +   L+   
Sbjct: 483 QITMGSYEALVP-------------KGQTIDAVEIAAVSRYCGEDAAVTLRLVPVLQAKL 529

Query: 180 SKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            ++             L  +   + +RG  +D A    L Q +D +   L+QE  +L   
Sbjct: 530 DEDPRLAGIFKEIEVPLEPVLARMEERGIRIDKAYLGELAQELDRDLESLEQEAYTLAGS 589

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +    ++L   LF + GL  +   +     +T   VL   +   P    + + R   
Sbjct: 590 K-FNLGSPKQLSDLLFNKLGLSAKKSRKTSLGYSTDAAVLEKLRDDHPIVEAILSYR-TL 647

Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           ++     ++ L   ++    R+         + TGR S      QN+P  +         
Sbjct: 648 AKLKSTYVDALPLLVDPRTDRVHTDFNQTVTT-TGRLSSSNPNLQNIPVRT--------- 697

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                             S  +R   +   G  LV AD + IE R+LA +  E   L+AF
Sbjct: 698 ----------------SFSRRIRRAFVPEPGWLLVAADYSQIELRILAHLTQEPVLLEAF 741

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           +TG D++  T                                                  
Sbjct: 742 QTGGDVHTLTARLLLG-------------------------------------------- 757

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
               +  S         N+           A E     T  E   KA+ +++  V     
Sbjct: 758 --REEVTSEERRLAKIINYGVVYGMGARRFARETGVSATEAEDFIKAFYRRYPAVFGFME 815

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           +  +   +                             +    GR   +R +G        
Sbjct: 816 QTRRMAVE--------------------------QGYVETLLGRRRYFRGLGQLNQ---R 846

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPD 638
                 R            +Q  + DI+   M+   +        ++L VHDE+V E P 
Sbjct: 847 DREGALRAAFNAP------IQGTAADIIKIAMVRLEQTLAGRRTRLLLQVHDELVFEMPP 900

Query: 639 TDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
            +      L    M +       +PLK E      +
Sbjct: 901 EERPEVEPLIRSGMENALDLL--VPLKVELNAGPNW 934


>gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735]
 gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735]
          Length = 920

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 196/694 (28%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQ---VL 57
             L +D ET S   +          D  ++   F  ++H        +D     Q   + 
Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYVAIPNDREEALQYVNIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           K   E+  +  +  N  ++  VLK    + +   +   T++            +  + E 
Sbjct: 398 KPVYEDPSILKIGQNLKYDYEVLKNY-GVTL-GGKMFDTMLAHYVIQPELHHNMDYMAET 455

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L     K     ELI    K           K       +   EY   D  +T ++   L
Sbjct: 456 LLH--YKTIHIDELIGPRGKH---------QKSMRDLDPKDVYEYAAEDADITLQLKNVL 504

Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L  +   +   G  +D    H  + I      +L+Q++   
Sbjct: 505 EPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNRLEQQIYEK 564

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +   P    + + R
Sbjct: 565 AG-ETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLRAKHPIVADILDYR 623

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     +  L + +N       T      + TGR S      QN+P  S   +E  
Sbjct: 624 -GLKKLLGTYVEALPKLINKRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKE-- 680

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R C +  +      AD + IE R++A ++G++  ++
Sbjct: 681 -----------------------IRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMIE 717

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T A+ ++   A VT ++R   K     + Y               + ++
Sbjct: 718 AFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYG-----ITTYGLAQRMEID 772

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                         +     +    +E        +                        
Sbjct: 773 NREARELIEGYFATFPKVRAYMEQAKEEARRKGYAETLF--------------------- 811

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                +RR +P +  K           +        +       
Sbjct: 812 --------------------GRRRYLPDITSKNGTVRGFAERNA--------INAPIQGS 843

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                ++     +     ENI                      ++L VHDE+       +
Sbjct: 844 EADIIKIAMIRIWQRFKAENI-------------------RSKMILQVHDELNFSVYPDE 884

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M     +   +PL A+    K +
Sbjct: 885 KERVEKIVLEEMQGA--YQLQVPLIADAGWGKNW 916


>gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302]
 gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302]
          Length = 920

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 196/694 (28%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQ---VL 57
             L +D ET S   +          D  ++   F  ++H        +D     Q   + 
Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYVAIPNDREEALQYVNIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           K   E+  +  +  N  ++  VLK    + +   +   T++            +  + E 
Sbjct: 398 KPVYEDPSILKIGQNLKYDYEVLKNY-GVTL-GGKMFDTMLAHYVIQPELHHNMDYMAET 455

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L     K     ELI    K           K       +   EY   D  +T ++   L
Sbjct: 456 LLH--YKTIHIDELIGPRGKH---------QKSMRDLDPKDVYEYAAEDADITLQLKNVL 504

Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L  +   +   G  +D    H  + I      +L+Q++   
Sbjct: 505 EPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNRLEQQIYEK 564

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +   P    + + R
Sbjct: 565 AG-ETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTNEEVLQSLRAKHPIVADILDYR 623

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     +  L + +N       T      + TGR S      QN+P  S   +E  
Sbjct: 624 -GLKKLLGTYVEALPKLINKRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKE-- 680

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R C +  +      AD + IE R++A ++G++  ++
Sbjct: 681 -----------------------IRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMIE 717

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T A+ ++   A VT ++R   K     + Y               + ++
Sbjct: 718 AFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYG-----ITTYGLAQRMEID 772

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                         +     +    +E        +                        
Sbjct: 773 NREARELIEGYFATFPKVRAYMEQAKEEARRKGYAETLF--------------------- 811

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                +RR +P +  K           +        +       
Sbjct: 812 --------------------GRRRYLPDITSKNGTVRGFAERNA--------INAPIQGS 843

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                ++     +     ENI                      ++L VHDE+       +
Sbjct: 844 EADIIKIAMIRIWQRFRAENI-------------------RSKMILQVHDELNFSVYPDE 884

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M     +   +PL A+    K +
Sbjct: 885 KERVEKIVLEEMQGA--YQLQVPLIADAGWGKNW 916


>gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
 gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516]
          Length = 933

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 93/689 (13%), Positives = 190/689 (27%), Gaps = 168/689 (24%)

Query: 30  VILFAFGFDDHPVELWDCVHD--------------------PVMPQVLKEALENTDVTIV 69
           ++  A   +          H                          +L+  LE+  +  V
Sbjct: 364 LVGLALAVEPGQAGYLPLRHVGDSEQGLFGSSDLAEGQMDFDAALALLRPMLEDDSIMKV 423

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEG 126
           A ++     +L       I +     T +L+ +         L  + + L         G
Sbjct: 424 AQDAKAAMKLLGRH---GIALAPVDDTHLLSYALNSGLHGHTLDTLSDRL--------LG 472

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ--- 183
              I                +   R        Y   +  +   +++ L+    ++Q   
Sbjct: 473 HRPIELKS----VVGTGKSARTFDRVPVEAVTPYAAEEADIVLRLWQALKQQLFRKQVTR 528

Query: 184 -------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                   L  +   +   G  VD      ++     +   L+ E+  L      +    
Sbjct: 529 VYETLERPLIPVLAGMERAGIRVDRDTLSRMSNAFSQKMAGLEAEVYELAG-REFNLGSP 587

Query: 237 EKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   LF E GL      +T    T   VL           ++ + R   S+      +
Sbjct: 588 KQLGEILFDELGLPGGKKGKTGAYGTGADVLEDLATEHDLPGRILDWRQ-ISKLKSTYTD 646

Query: 293 TLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           +L   +  +  R+  +    GA+ TGR +      QN+P  +                  
Sbjct: 647 SLQGYIQPETSRVHTSYSQAGAA-TGRLASTEPNLQNIPVRTEEGRR------------- 692

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A  GK LV  D + IE R+LA +AG     +AF +G+D++  
Sbjct: 693 ------------IREAFVADLGKVLVSLDYSQIELRILAHVAGLDALREAFRSGQDIHAA 740

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  FNV   ++T D R   K +                    G++             
Sbjct: 741 TASEMFNVPLEEMTPDVRRQAKAIN--------------FGVIYGIS------------- 773

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                A          +     + ++   + +  +E     ++ 
Sbjct: 774 -----------------GFGLARSLRIPREEAQGFINRYFERFPGIRDYMDETVAFAKE- 815

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                    +  +    GR +   ++               R  
Sbjct: 816 -------------------------HGFVQTLFGRKIHTPEINAK----GPGAGFARRAA 846

Query: 592 TYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIVLTVHDEIVCETPDTDEFN-ASM 646
                     +Q  + D++   M+            ++L VHDE++ E  +       + 
Sbjct: 847 INAP------IQGTAADVIRRAMVRMPAAIEGLPATMLLQVHDELLFEVEEGAVEALVAA 900

Query: 647 LYHLMTSN--PSWAKGLPLKAEGYESKRY 673
              +M +   P     +PL  +  +   +
Sbjct: 901 AREVMEAAAMPVVQFTVPLVVDAGQGTNW 929


>gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
 gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215]
          Length = 976

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/712 (15%), Positives = 197/712 (27%), Gaps = 160/712 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------- 50
            + +D ET S   +          D  ++       +    +      H           
Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLS 431

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPS 107
              +   L+  +E+        NS F+R +      L +       TL+           
Sbjct: 432 IEYVFSKLRNWIEDPKKEKALQNSKFDRQIFFNH-GLILK-GVTFDTLLADYLLNNQEKH 489

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L  +   L                  K  + +    +NK            YC  DV +
Sbjct: 490 GLSEISFRL---------------FGFKPPSFKETVGKNKDFSFVDIDEASIYCGYDVFL 534

Query: 168 TREIFKRLEP------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           T +I K  +                 E  L  +   +   G  +D+     L++ +    
Sbjct: 535 TFKIVKIFKERFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTL 594

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270
             ++ ++  L      +    ++L   LF +  L  +    T+   +T   VL       
Sbjct: 595 EDIESKVYEL-AEENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEH 653

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                +  +R   S+     ++ L   +N   GR+        A+ TGR S      QN+
Sbjct: 654 EIIQHLIKHR-TLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +  +  KL+ AD + IE R+L
Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKNCKLLSADYSQIELRIL 746

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A E+  + AF   +D++  T    F     Q++ D+R +GK +   + Y  G K   
Sbjct: 747 AHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSDERRVGKTINFGVIYGMGIKK-- 802

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
             A +TG++              E +     F    +             G   E     
Sbjct: 803 -FARSTGVSTPE--AKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK 859

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                  +     K+   + L S R   
Sbjct: 860 -------------------------------------NGLGRLIGKDPYEIDLQSARR-- 880

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
                           Q  R            +Q  S DI+   M+   K          
Sbjct: 881 -----------AGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNVPAK 923

Query: 624 IVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE++ E           ++   M         +PL  +      + 
Sbjct: 924 MLLQVHDELLFEVEQDSLEITTKLVKKTMEDCVK--LNVPLLVDIGIGDNWM 973


>gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 932

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 107/698 (15%), Positives = 204/698 (29%), Gaps = 154/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +D+       T++ +           + +
Sbjct: 406 AQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIA-FDTMLESYVLDSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511

Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P   + +            L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEIPLLPILSRIERTGVLIDQNILVAHSKELTIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA EG +++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPEGYRIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F ++  +VT +QR   K +   L Y   A          
Sbjct: 724 KGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+         +   E +     +    ++   E        G          R    
Sbjct: 779 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +   ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH E V E
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH-ESVLE 898

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + +        +  LM  +   A  +PLK +      +
Sbjct: 899 SAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 928


>gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917]
 gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917]
          Length = 996

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/720 (15%), Positives = 200/720 (27%), Gaps = 166/720 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD----------- 50
           + +D ET                   ++     +      +      H            
Sbjct: 391 VALDTETSDLNPFK----------AQLVGVGVCWGPELDDLAYIPVGHRPSAEPSLEDSS 440

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARS 102
                    +   L   L + +      N+ ++R +L       +P+   +  TL+    
Sbjct: 441 AIQQLPLDTVLAQLAPWLASAEHPKALQNAKYDRLILLRH---GLPLGGVVMDTLLADYL 497

Query: 103 NGLP--SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   L A+ E    +         +L+         +    +              
Sbjct: 498 RDAAAKHGLDAMAERDYGIQP---TLFSDLV--------GKAKDGKASCFAEVEINQAAL 546

Query: 160 YCKGDVTVTREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTL 207
           YC  DV +TR +   L                  E  L  +   +   G  +D      L
Sbjct: 547 YCGMDVHLTRRLALDLRQQLAAMGPRLLPLLDQVELPLEPVLALMEATGIRIDHPYLAAL 606

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRV 262
           +  +     +L+ E +        +    ++L   LF   GL  +         +T   V
Sbjct: 607 STEMAQTLERLETEAKQAAGM-EFNLASPKQLGELLFDTLGLDRKKSRRTKTGYSTDATV 665

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSG 321
           L   ++  P    V  +R   S+     ++ L + +    GR+         + TGR S 
Sbjct: 666 LEKLEQDHPVVPLVLEHR-TLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSS 723

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+P  +                           S  +R   +   G +L+ AD 
Sbjct: 724 SNPNLQNIPVRTE-------------------------FSRRIRKAFLPQAGWQLLSADY 758

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+L  ++GE+   +A+  G+D++  T      +    VT D+R +GK +   + Y
Sbjct: 759 SQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKKAVTADERRLGKTINFGVIY 816

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             GA   Q+ A  TG++          +   E +     F    +         +  +G 
Sbjct: 817 GMGA---QRFARETGVS--QAQAKEFLSKYKERYPKVFAFLELQERLALSRGYVETILG- 870

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                                                     R  P  + +     L+  
Sbjct: 871 ------------------------------------------RRRPFHFDRNGLGRLLGK 888

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620
            P        ++    +       Q  R            +Q  S DI+   M+    A 
Sbjct: 889 DPL-------EIDLEVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAAL 935

Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                   ++L VHDE+V E   T        +   M         +PL  E      + 
Sbjct: 936 EQQSLPARLLLQVHDELVLEVDPTALERVRQLVVTTMEQAIQ--LSVPLVVETGVGANWM 993


>gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 976

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/712 (16%), Positives = 204/712 (28%), Gaps = 157/712 (22%)

Query: 2   ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDPVMPQ--- 55
             +  +D ET S   L          D  ++   F   +    +      H     +   
Sbjct: 380 KEIVALDTETNSLNPL----------DAELVGIGFCLGEEINDLFYIPLSHQSQKKEMNQ 429

Query: 56  --------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
                    L+  +E+ +      N  F+R +      L++       TL+         
Sbjct: 430 LAIEDVFFNLRSWIESPEKEKTLQNCKFDRQIFYNH-GLNLR-GVTFDTLLADYILNN-- 485

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
                 E   LS     E         K  T +    +NK            YC  DV +
Sbjct: 486 -----QEKHGLSEISFRE------FGFKPPTFKETVGKNKDFSFVDINDASTYCGYDVLL 534

Query: 168 TREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           T +I K  +                 E  L  +   +   G  +D    + L+  +    
Sbjct: 535 TFKIAKIFKERFNNENKDLTKLFKEIELPLEPVLSEMEMNGIRIDTTYLNELSGELKSTL 594

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270
             +++ +  +      +    ++L   LF +  L  +    T+   +T   VL    +  
Sbjct: 595 ENIEENVFEI-AKQEFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVEEH 653

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                +  +R   S+     ++ L   ++   GR+        A+ TGR S      QN+
Sbjct: 654 EIIPFLIKHR-TLSKLLSTYIDALPNLISEKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +  +G KL+ AD + IE R+L
Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKGWKLLSADYSQIELRIL 746

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A E+  + AF   +D++  T    F      +  D+R +GK +   + Y  G K   
Sbjct: 747 AHLANEEILINAFHKNDDIHSLTARLIF--EKEDINSDERRVGKTINFGVIYGMGIKK-- 802

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
             A +TG++              E +     F  + +         +   G   E     
Sbjct: 803 -FARSTGVSTTE--AKEFLIKYKERYAKIFKFLEFQERLALSKGYVETIFGRKREFKFD- 858

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                     K     LI   P      
Sbjct: 859 ------------------------------------------KNGLGRLIGKDPY----- 871

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------D 623
             ++    +       Q  R            +Q  S DI+   M+   K          
Sbjct: 872 --EIDLQTARKAGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKLLEMNIPVK 923

Query: 624 IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE++ E  PD  E    ++   M         +PL  +      + 
Sbjct: 924 MLLQVHDELLFEVQPDFLEITKDLVKETMEDCVK--LNVPLLVDIGVGNNWM 973


>gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
 gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211]
          Length = 985

 Score =  369 bits (947), Expect = e-99,   Method: Composition-based stats.
 Identities = 109/716 (15%), Positives = 214/716 (29%), Gaps = 165/716 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVHDPV--------- 52
           + ID ET S                 ++     + + P  +      H            
Sbjct: 387 VAIDTETTSLNPFQS----------ELVGIGLCWGERPEQIAYIPLGHITEDLFEDQSSN 436

Query: 53  -------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                  + + L   L +++   V  N+ ++R +      + +     + TL+      +
Sbjct: 437 LQLPLIDVIKGLSPWLGSSEHPKVLQNAKYDRLIFLQY-GIPLE-GVIMDTLLADYLCDV 494

Query: 106 PS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
               +L+A+ +                           +  +++     +      YC  
Sbjct: 495 THRHSLEAMAKR---------------EFGFTPTNFNEIVGKDETFKNVSISTASLYCGM 539

Query: 164 DVTVTREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIV 211
           DV +TR+++   +    +             Q L  +   +  RG  +D+     L+  +
Sbjct: 540 DVYLTRKLYFLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGIRIDIPYLKELSIEL 599

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSSN 266
           +     +++    +      +    ++L   LF + GL  +         +T   VL   
Sbjct: 600 NKALKNIEKSAYKIAKTD-FNLSSPKQLGEVLFEQLGLDKKKSRRTKTGWSTDANVLERL 658

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFP 325
           +   P    V  +R   S+     +  L + +    GR+         + TGR S     
Sbjct: 659 QGDNPIVPLVIEHR-TLSKLLSTYVEALPQLVEAQTGRVHTDFNQAV-TATGRLSSSNPN 716

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +                           S  +R   +  EG +L+ AD + IE
Sbjct: 717 LQNIPIRTE-------------------------FSRRIRKAFLPREGWQLLSADYSQIE 751

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA ++GE    +A+  G+D++  T      +    +T ++R +GK +   + Y  G 
Sbjct: 752 LRILAHLSGEASLQEAYRNGDDVHALTAKIL--LDKESITSNERRLGKTINFGVIYGMGV 809

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
              Q+ A +TG++ +        N   E + +  ++    +         +  +G     
Sbjct: 810 ---QRFARSTGVSQSE--AKDFLNRYKERYTNVFSYLELQERLALSKGFVETILGRRRHF 864

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                                                      +     KN L + L   
Sbjct: 865 HFDK-------------------------------------NGLGRLLGKNPLEIDLKLA 887

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
           R                   Q  R            +Q  S DI+   M+   K      
Sbjct: 888 RR-------------AGMEAQQLRAAANAP------IQGSSADIIKVAMVKLDKELKNEG 928

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
              +++L VHDE+V E   T       L  H M         +PL  E    K + 
Sbjct: 929 LPANLLLQVHDELVLEVDPTATEQVKALVIHTMEKAV--LLNVPLVVEASVGKNWM 982


>gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98]
          Length = 620

 Score =  369 bits (947), Expect = e-99,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 46  AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 95

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 96  AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 153

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 154 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 203

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 204 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 263

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 264 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 322

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 323 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 380

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 381 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 416

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 417 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 471

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 472 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 522

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 523 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 564

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL V       
Sbjct: 565 -------------RARM--------IMQ-------------VHDE---LVLEV------- 580

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 581 -PEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 616


>gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953]
 gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
 gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953]
 gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+]
          Length = 932

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 198/699 (28%), Gaps = 156/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +D+       T++ +           + +
Sbjct: 406 ATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIA-FDTMLESYVLDSVAGRHDMDS 463

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 464 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 511

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 512 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 571

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 572 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 630

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 631 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 688

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G  ++ AD + IE R++A ++ +
Sbjct: 689 GRR-------------------------IRQAFIAPKGYCIMAADYSQIELRIMAHLSQD 723

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  G+D++  T A  F     +VT +QR   K +   L Y   A          
Sbjct: 724 NGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 778

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +   E +     +    ++   E        G          R  + 
Sbjct: 779 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 838

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +   ++ +             
Sbjct: 839 R-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRV------------- 880

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH      
Sbjct: 881 -------------------------IMQ-------------VHDE---LVFEVH------ 893

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++   +A   +  LM  +   A  +PLK +      +
Sbjct: 894 --ESVLQSAEQKIRELMEKSMQLA--VPLKVDVGVGANW 928


>gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
 gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2]
          Length = 914

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 105/720 (14%), Positives = 195/720 (27%), Gaps = 192/720 (26%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAF------------------GFDDHPVELW 45
           L ID ET S   L             ++  +                     ++      
Sbjct: 317 LVIDTETTSLDPL----------QAELVGISLTLAAPGSDESEAKASRTAAGENGACWYL 366

Query: 46  DCVHDPV-------------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
              H                + + L   L +     + HN  ++  VL      D+P+  
Sbjct: 367 PIAHRREDGSAAANQLPLAEVRRALAPLLADDRRLKLGHNLKYDLQVLHRH---DLPLAP 423

Query: 93  -WICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
               T++ +           L  + E L            L  R            R + 
Sbjct: 424 PLADTMIASYLIDPSRRSHGLDVLSEEL------------LQRRLTSFAEVTDRDRRPEA 471

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYC 198
               A      Y   DV  TR +++  +P              E  L  +   +   G  
Sbjct: 472 FAHVAPAAAAAYSCEDVAATRLLWQLFQPKLAELELAELFYQVEITLLPILARMERVGIL 531

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           +D  +   L      E  +L  ++  L      +     +L   LF    L     T+  
Sbjct: 532 LDGQVLKELAAEFSQELERLSSKIYQLAGV-EFNINSPRQLGEVLFERLKLPHGRKTKGK 590

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLG 312
              +T  R L            +   R   S+     ++ L   +N  DGR+  +     
Sbjct: 591 TGYSTDIRELERLAAYHDLPAAIIAQRN-LSKLKSTYVDKLSTLINPADGRIHTSFNQ-T 648

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  ++                             +R   IA+ 
Sbjct: 649 VTATGRLSSSNPNLQNIPVRTQEGRR-------------------------IRGAFIAAP 683

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G + + AD + I+ RVLA  + +   L+AF+  +D++  T A  F V PA VT D R + 
Sbjct: 684 GHRFLAADYSQIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAEIFRVNPAMVTADMRRVA 743

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++                                  
Sbjct: 744 KTINF--------------GIIYGMS------------------------------AFGL 759

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           A +        +     + + +  V     E+ +   +                      
Sbjct: 760 AEQLRCSRKEAQVFIDRYFELYRGVKTFMEEIVEQARR---------------------- 797

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
               +  +     R     ++ ++            R            +Q  + DI+  
Sbjct: 798 ----DGFVRTLLKRRRQLPEINSSNKLRR---EFAERTAINTP------IQGTAADIIKL 844

Query: 613 GMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
             +   +           +L +HDE++ E P+ ++     L    M +       +PL+ 
Sbjct: 845 AAIACDRELRRKNFNTEALLQIHDELIFEVPEDEQAAVGKLVQQAMENVME--LTVPLRV 902


>gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264]
 gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264]
          Length = 926

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 190/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 402 AKLTPWLEDASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+           L  R  K E       +             EY   D  +T ++   
Sbjct: 460 ALRH----------LGVRTIKYEDVAGKGAQQIGFDEVPLEQASEYAAEDADITLQLHHA 509

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +     +L+Q+  
Sbjct: 510 LYPQIAREPGLSRVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIELEQQAY 569

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 570 GLAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 628

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N +     T      + TGR +      QN+P  +      
Sbjct: 629 R-GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 686

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G K+V AD + IE R++A ++ ++  L
Sbjct: 687 ------------------------IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLL 722

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 723 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 777

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 778 TRDAAKLYIDRYFLRYPGVARYMEETRARAKEKGYVETVFGR---------RLWLPEING 828

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 829 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 870

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 871 -------------RARM--------IMQ-------------VHDE---LVL--------E 885

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+++       L  +M         +PL AE    + +
Sbjct: 886 VPESELSIVREKLPEMMCGVAK--LKVPLVAEVGAGENW 922


>gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311]
 gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311]
          Length = 994

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 107/712 (15%), Positives = 208/712 (29%), Gaps = 158/712 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD----------P 51
           + +D ET                   ++     +      +      H            
Sbjct: 397 VALDTETTDLNPFR----------AQLVGIGMCWGPGSDDLAYIPVSHQGDPIPDQLPLE 446

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--SA 108
            + Q L   L + +      N+ ++R +L       +P+   +  TL+            
Sbjct: 447 TVLQALAPWLASGEHPKALQNAKYDRLILLRH---GLPLAGVVMDTLLADYLRDAAAKHG 503

Query: 109 LKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L A+ +    +S        +L+         +    +             +YC  DV +
Sbjct: 504 LDAMAQRDYGISP---TLFSDLV--------GKAKEGKASNFSEVPLESAAQYCGMDVHL 552

Query: 168 TREIFKRLEPLSS------------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           TR++   L                  E  L  +   +   G  +DV     L+  +    
Sbjct: 553 TRKLAIDLNQQLEALGPQLPNLLSKVELPLEPVLAVMEATGIRIDVPYLEALSCEIGTNL 612

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLT 270
            +L+   +     +  +    ++L   LF   GL  +         +T   VL   +   
Sbjct: 613 ERLEASAKE-AAEIDFNLASPKQLGDLLFNTLGLDRKKSRRTKTGYSTDATVLEKLEHDH 671

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           P    V  +R+  S+     ++ L + +    GR+         + TGR S      QN+
Sbjct: 672 PVVPLVLEHRV-LSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNI 729

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +  +G  L+ AD + IE R+L
Sbjct: 730 PVRTE-------------------------YSRRIRKAFLPQDGWTLLSADYSQIELRIL 764

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
             ++GE+   +A+  G+D++  T      +   +V+ D+R +GK +   + Y  GA   Q
Sbjct: 765 THLSGEEVLQQAYRDGDDVHALTARLL--LDKDEVSPDERRLGKTINFGVIYGMGA---Q 819

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           + A  TG++ +        +   + +     F    +         +  +G         
Sbjct: 820 RFARETGVSQSE--AKDFLSKYKQRYPKVFAFLELQERLALSQGYVETILG--------- 868

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                             R  P  + +     L  M P      
Sbjct: 869 ----------------------------------RRRPFHFDRNGLGRLNGMDPL----- 889

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
             ++    +       Q  R            +Q  S DI+   M+              
Sbjct: 890 --EINLEVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQAKLESKNLPAR 941

Query: 624 IVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE+V ET           +   M +       +PL+ E      + 
Sbjct: 942 LLLQVHDELVLETEPEALAVVEELVVQTMKNAID--LSVPLEVETGNGANWM 991


>gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH]
          Length = 926

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 189/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 402 AKLTPWLEDASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+           L  R  K E       +             EY   D  +T ++   
Sbjct: 460 ALRH----------LGVRTIKYEDVAGKGAQQIGFDEVPLEQASEYAAEDADITLQLHHA 509

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +     +L+Q+  
Sbjct: 510 LYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDTDRLGRQSSEIATRLIELEQQAY 569

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 570 GLAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 628

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N +     T      + TGR +      QN+P  +      
Sbjct: 629 R-GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 686

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G K+V AD + IE R++A ++ ++  L
Sbjct: 687 ------------------------IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLL 722

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 723 RAFANGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 777

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 778 TRDAAKLYIDRYFLRYPGVARYMEETRARAKEKGYVETVFGR---------RLWLPEING 828

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 829 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 870

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 871 -------------RARM--------IMQ-------------VHDE---LVL--------E 885

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 886 VPEGELSIVREKLPEMMCGVAK--LKVPLVAEVGAGENW 922


>gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4]
          Length = 926

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 190/699 (27%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 402 AKLTPWLEDASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+           L  R  K E       +             EY   D  +T ++   
Sbjct: 460 ALRH----------LGVRTIKYEDVAGKGAQQIGFDEVPLEQASEYAAEDADITLQLHHA 509

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +     +L+Q+  
Sbjct: 510 LYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIELEQQAY 569

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 570 GLAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 628

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N +     T      + TGR +      QN+P  +      
Sbjct: 629 R-GLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 686

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA  G K+V AD + IE R++A ++ ++  L
Sbjct: 687 ------------------------IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLL 722

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 723 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 777

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 778 TRDAAKLYIDRYFLRYPGVARYMEETRARAKEKGYVETVFGR---------RLWLPEING 828

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 829 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 870

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL        E
Sbjct: 871 -------------RARM--------IMQ-------------VHDE---LVL--------E 885

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+++       L  +M         +PL AE    + +
Sbjct: 886 VPESELSIVREKLPEMMCGVAK--LKVPLVAEVGAGENW 922


>gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 985

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 109/716 (15%), Positives = 216/716 (30%), Gaps = 165/716 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHD----------- 50
           + ID ET S                 ++   F + +    +      H+           
Sbjct: 387 VAIDTETTSLNPFK----------AELVGLGFCWGENLDDIAYIPLGHNSQGELKDQSIR 436

Query: 51  -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                  + Q L   L ++    V  N+ ++R +      + +     + TL+    +  
Sbjct: 437 QQLPIQNVIQSLTPWLSSSYHPKVLQNAKYDRLIFL-HNGIPLE-GVVMDTLLADYLSNS 494

Query: 106 P--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
               +L  + +                         + L  + +            YC  
Sbjct: 495 TNKHSLDEIAKR---------------EYGFTPINFKELVGKGETFKDVDIDTASIYCGM 539

Query: 164 DVTVTREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIV 211
           DV +TR++  R+      +            Q L  +   +  RG C+D+     L++ +
Sbjct: 540 DVYLTRKLSFRIRSQLQTKGSELIQLLEKVEQPLEPILAEMEARGICIDIPYLKELSKEL 599

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSN 266
           +     L+++          +    ++L   LF +  L  +    T+   +T   VL   
Sbjct: 600 NQTLKGLEEQAYKSAGF-EFNLNSPKQLGEILFDKLALDKKKSRKTKTGWSTDANVLERL 658

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFP 325
           +   P    +  +R   S+     ++ L + +    GR+         + TGR S     
Sbjct: 659 EADHPLVPLLVEHR-TLSKLVSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPN 716

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +                           S  +R   +  E  KL+ AD + IE
Sbjct: 717 LQNIPIRTE-------------------------FSRRIRKAFLPQENWKLISADYSQIE 751

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA ++GE+   +A++ G+D++  T      +    +  ++R +GK +   + Y  GA
Sbjct: 752 LRILAHLSGEEILQEAYKNGDDVHTLTAKIL--LEKESINSNERRLGKTINFGVIYGMGA 809

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
              Q+ A +TGLN +        N   E +    +F    +            +G     
Sbjct: 810 ---QRFARSTGLNQSE--AKDFLNRFKERYPKVFSFLELQERLALSKGYVQTLLGR---- 860

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
             + +                                       + K     L+   P  
Sbjct: 861 --RRYFN-------------------------------------FDKNGLGRLLGSDPM- 880

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
                 ++   R+       Q  R            +Q  S DI+   M+          
Sbjct: 881 ------NIDLKRARRAGMEAQQLRAAANAP------IQGSSADIIKIAMVQLATKLKVSG 928

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674
              +++L VHDE+V E   +       +    M +    A  +PL         + 
Sbjct: 929 VAANLLLQVHDELVLEVEPSVIEEVKNIVVSTMENAVHLA--VPLVVHASIGDNWM 982


>gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047]
 gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047]
          Length = 610

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 198/700 (28%), Gaps = 155/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 34  KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 83

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN +   +  N  F+ ++      +++       T++L+ +        +
Sbjct: 84  TALAAIKPILENPNSHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 141

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 142 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 189

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 190 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 249

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF + GL           +T + VL           
Sbjct: 250 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHELP- 307

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 308 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 367

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 368 EGRR-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 402

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A        +
Sbjct: 403 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 457

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++        N   + +   + F   ++         +   G              
Sbjct: 458 RQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAM 517

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +        G A    KR  + +  +                    D+ 
Sbjct: 518 RR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI---------------RHDPDI- 556

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                   E I+Q                            +V 
Sbjct: 557 ------------------------EMIMQ-------------VHDE-----------LVF 568

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E   +   F    +   M +       +PL  E    K +
Sbjct: 569 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 606


>gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 929

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 104/697 (14%), Positives = 199/697 (28%), Gaps = 153/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET     LT            +I  +F             HD            + 
Sbjct: 354 AFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAKVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
            + K  LE+  +  +  N  F++ V++   ++D+       T++ +           + +
Sbjct: 404 ALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIA-FDTMLESYVLDSVAGRHDMDS 461

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT  +
Sbjct: 462 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHL 509

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            ++L                    L  +   I   G  +D A+    ++ +     +L+ 
Sbjct: 510 HQKLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAELET 569

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L           +T + VL+      P    +
Sbjct: 570 QAYELAG-EEFNLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLI 628

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N   +   T      + TGR S      QN+P  +   
Sbjct: 629 LEYR-GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 687

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA +G  +V AD + IE R++A ++G++
Sbjct: 688 RR-------------------------IRQAFIAPKGYSIVAADYSQIELRIMAHLSGDK 722

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G D++  T +  F  A  +VT +QR   K +   L Y   A        +  
Sbjct: 723 GLLNAFANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSA-----FGLSRQ 777

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           LN+         N   E +   +++    ++   EH       G          R   +R
Sbjct: 778 LNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMAR 837

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +A       G A    K+  + +    +                       
Sbjct: 838 -----KGAERAAINAPMQGTAADIIKKAMIAIDDWLQKDAPQ------------------ 874

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                 + I+Q                    +V  +HD ++   
Sbjct: 875 ---------------------VKMIMQ-------------VHDE---LVFEIHDSVI--- 894

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               E + S +  LM         +PL+ +      +
Sbjct: 895 ----EESISKIKTLMEGCME--LNVPLQVDIGTGMNW 925


>gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91]
          Length = 622

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 48  AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 97

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 98  AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 155

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 156 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 205

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 206 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 265

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 266 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 324

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 325 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 382

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 383 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 418

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 419 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 473

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 474 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 524

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 525 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 566

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL V       
Sbjct: 567 -------------RARM--------IMQ-------------VHDE---LVLEV------- 582

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 583 -PEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 618


>gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
 gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473]
          Length = 934

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 107/698 (15%), Positives = 200/698 (28%), Gaps = 154/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
             D ET     L+            +I  +F             HD +          + 
Sbjct: 358 AFDTETDGLDTLS----------ANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRSWVL 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +++       T++ +           + +
Sbjct: 408 TTLKPLLEDEQALKVGQNLKFDKSLLARY-GIELRGIA-FDTMLESYVLNSVAGRHDMDS 465

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A      Y   D  VT ++
Sbjct: 466 LSERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQASPYAAEDADVTLQL 513

Query: 172 FKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              + P               E  L  +   I   G  +D ++  T +Q + +  T+L++
Sbjct: 514 HLAMWPKLQESEDLLRVFQQIEMPLLPILSRIERTGVLIDQSILATHSQELTIRLTELEK 573

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 574 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVL 632

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 633 LEYR-GLAKLKSTYTDKLPLMINPISGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 690

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G  ++ AD + IE R++A ++ +
Sbjct: 691 GRR-------------------------IRQAFIAPAGYCILAADYSQIELRIMAHLSQD 725

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF  G+D++  T A  F +    VT +QR   K +   L Y   A          
Sbjct: 726 KGLLAAFAEGKDIHRATAAEVFGLPLENVTTEQRRSAKAINFGLIYGMSA-----FGLAR 780

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+         +   E +     +    ++   +        G          R  + 
Sbjct: 781 QLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANR 840

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +                    
Sbjct: 841 R-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ-------------------- 875

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                L   I+Q                    +V  VH+ +V  
Sbjct: 876 ------------------AEPLVRVIMQ-------------VHDE---LVFEVHESVV-- 899

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                E     +  LM  +      +PLK E    K +
Sbjct: 900 -----ESATQTICDLMEQSMQ--LDVPLKVEVGVGKNW 930


>gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12]
 gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12]
          Length = 934

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 109/702 (15%), Positives = 205/702 (29%), Gaps = 165/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
            ID ET S   +             ++  +              H             + 
Sbjct: 361 AIDTETDSLDPMR----------ARLVGISLSVAPGEAAYLPLAHAYPGAPEQLPMAEVL 410

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
           + L+  LEN D   +  N+ ++R V      + I  +    TL+ +       P +L ++
Sbjct: 411 ERLRPWLENADKPKLGQNAKYDRHVFANA-GVTIRGYA-HDTLLESYVIEAHKPHSLDSL 468

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                     +             E       +     + A  +   Y   D  +T ++ 
Sbjct: 469 VSRHLGRDDTLS-----------YEQVCGKGTKAITFDQVALDVATRYSGEDADLTLQVH 517

Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +RL P    +           ++  + Q I   G  VD  L    +  +  +   L+ + 
Sbjct: 518 QRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTLEAQA 577

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    +++   LF    L ++  T     +T + VL    +  P    + +
Sbjct: 578 FELAGGA-FNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEEVLEKLAEDYPLPRVILD 636

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+        L + +N D     T      + TGR +      QN+P  +     
Sbjct: 637 HR-SLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR 695

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA +G  +  +D + IE R++A ++ +   
Sbjct: 696 -------------------------IREAFIAPKGWLIASSDYSQIELRIMAHLSQDAGL 730

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  GED++  T A  F V P +V+ DQR + KV+                    G++
Sbjct: 731 LAAFAAGEDIHRATAAEIFGVTPLEVSSDQRRMAKVINF--------------GLIYGMS 776

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A       +A +     +  ++  V+
Sbjct: 777 ------------------------------AFGLARNLGLERSAAQLYIDRYFARYPGVA 806

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +   +                             +    GR L   D+  +  
Sbjct: 807 AYMERTRKLAAE--------------------------QGYVETVFGRRLWLPDIHASGP 840

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632
                 R                +Q  + D++   M+         K    +V+ VHDE+
Sbjct: 841 RRAAAERA----------AINAPMQGTAADLIKMAMIAVDAALMREKLRSRVVMQVHDEL 890

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E P+ +       +  LM         +PL AE      +
Sbjct: 891 VLEVPEEETHWVREHIPRLMAGVAQ--LDVPLLAEMGLGANW 930


>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20]
 gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
 gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I
 gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20]
 gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW]
          Length = 930

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 101/700 (14%), Positives = 199/700 (28%), Gaps = 155/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 354 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN ++  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 569

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++  +L      +    ++L+  LF +  L           +T + VL           
Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLELPVLQKTPKGAPSTNEEVLEELSYSHELP- 627

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++       S+      + L + +NS      T      + TGR S      QN+P  + 
Sbjct: 628 KILVKHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++G
Sbjct: 688 EGRH-------------------------IRQAFIAREGYSIVAADYSQIELRIMAHLSG 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y   A        +
Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 777

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++        +   + +   + F   ++E        +   G              
Sbjct: 778 RQLGISRADAQKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAM 837

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +        G A    KR  + L  +                    D+ 
Sbjct: 838 RR-----KGAERVAINAPMQGTAADIIKRAMIKLDEVI---------------RHDPDI- 876

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                   E I+Q                            +V 
Sbjct: 877 ------------------------EMIMQ-------------VHDE-----------LVF 888

Query: 635 ETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E   +   F    +   M +       +PL  E    + +
Sbjct: 889 EVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926


>gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894]
          Length = 625

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 51  AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 100

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 101 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 158

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 159 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 208

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 209 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAY 268

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 269 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 327

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 328 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 385

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 386 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 421

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 422 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 476

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 477 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 527

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 528 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 569

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL V       
Sbjct: 570 -------------RARM--------IMQ-------------VHDE---LVLEV------- 585

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 586 -PEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 621


>gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14]
          Length = 619

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 45  AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 94

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 95  AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 152

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 153 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 202

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 203 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 262

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 263 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 321

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 322 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 379

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 380 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 415

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 416 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 470

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 471 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 521

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 522 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 563

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL V       
Sbjct: 564 -------------RARM--------IMQ-------------VHDE---LVLEV------- 579

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 580 -PEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 615


>gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112]
          Length = 618

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 44  AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 93

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 94  AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 151

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 152 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 201

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 202 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 261

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 262 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 320

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 321 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 378

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 379 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 414

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 415 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 469

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 470 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 520

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 521 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 562

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL V       
Sbjct: 563 -------------RARM--------IMQ-------------VHDE---LVLEV------- 578

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 579 -PEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 614


>gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210]
          Length = 622

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 48  AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVL 97

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L   LE+     +  +  ++  VL     + +       TL+ +              
Sbjct: 98  AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 155

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +             EY   D  +T ++   
Sbjct: 156 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVPLAQASEYAAEDADITLQLHHA 205

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D       +  +      L+QE  
Sbjct: 206 LYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAY 265

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 266 ALAGG-EFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 324

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L   +N D     T      + TGR +      QN+P  +      
Sbjct: 325 R-GLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR- 382

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  G K+V AD + IE R++A ++ ++  L
Sbjct: 383 ------------------------IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLL 418

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GED++  T A  F V P +VT DQR I KV+   L Y             + L +
Sbjct: 419 RAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLASNLGI 473

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              A  +  +     +     +    +    E    +   G          R     ++ 
Sbjct: 474 TRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGR---------RLWLPEING 524

Query: 520 ----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    +                      
Sbjct: 525 GNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGL------------------ 566

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R           I+Q                    +VL V       
Sbjct: 567 -------------RARM--------IMQ-------------VHDE---LVLEV------- 582

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +       L  +M         +PL AE    + +
Sbjct: 583 -PEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 618


>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
 gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
           3'->5' exonuclease [Cupriavidus metallidurans CH34]
          Length = 934

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 95/704 (13%), Positives = 190/704 (26%), Gaps = 159/704 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + ID ET S   +             ++  +   +          H             
Sbjct: 353 IVAIDTETTSLDPML----------AQLVGISLSVEPGAAAYIPVAHRGPDVAGLENHGQ 402

Query: 51  ---PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-- 105
                + + ++  LE+     +  +  ++  V      + +       T++ +       
Sbjct: 403 LSREYVLERMRGWLEDPARPKLGQHLKYDSHVFANH-GVALRGIA-HDTMLESYVLASYR 460

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              + ++ E L            L  +    E             +       EY   D 
Sbjct: 461 NHGMDSLAERL------------LSLKTITYEEVCGKGANQIGFDQIDLPRATEYAAEDA 508

Query: 166 TVTREIFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
            VT  + ++++P     +            +  + Q I   G  +D       +  + + 
Sbjct: 509 DVTLRLHRKMQPQLEASEGLKYVYEQIEIPVSVVLQKIERNGVLIDADRLAAQSAELGLR 568

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLT 270
              L++           +    +++   LF +  L +   T     +T + VL       
Sbjct: 569 MMDLERAAHDAAGQP-FNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLADDY 627

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    + + R   S+      + L + +N +     T      + TGR +      QN+P
Sbjct: 628 PLPKLLLDYR-GLSKLKSTYTDKLPKMVNPNTGRVHTSYGQATAVTGRLASTDPNLQNIP 686

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
             +                              +R   IA+ G  +V AD + IE R++A
Sbjct: 687 VRTEEGRR-------------------------IREAFIAAPGNVIVSADYSQIELRIMA 721

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G++  L+AF  GED++  T    F V    V+ +QR   KV+   L Y   A     
Sbjct: 722 HISGDENLLRAFANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSA----- 776

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
               + L +   A     +     +    ++    ++   E    +   G          
Sbjct: 777 FGLASNLGIEREAAKHYIDRYFMRYPGVAHYMEQTRQTAREQGYVETVFGRRLWLP---- 832

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              +           +A       G A    K   + +                      
Sbjct: 833 -DINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQDW------------------- 872

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
             +   R                       I+Q                    +VL    
Sbjct: 873 --LEGERLGTRQ------------------IMQ-------------VHDE---LVL---- 892

Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               E P  +       L  LM +  +    +PL AE      +
Sbjct: 893 ----EVPQAELELVRVKLPELMCAVAT--LNVPLVAEVGSGANW 930


>gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804]
 gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii]
          Length = 948

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 104/702 (14%), Positives = 193/702 (27%), Gaps = 164/702 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           + +D ET S  ++             ++  +              H             +
Sbjct: 375 VALDTETTSLDEM----------QASLVGISMALAPGVACYIPLAHRGPDSAEQLPKREV 424

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111
            + ++  L++     + H++ ++  V      + +   +   T++ A          L  
Sbjct: 425 LERMRAWLQDPARPKLLHHAKYDAHVFAN-EGVALAGIQ-DDTMLQAYVLESHRGVGLND 482

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L       E       +       A    G Y   D   T ++
Sbjct: 483 LAQRY------------LGRGGITYEELCGKGAKQIGFDEVAVEQAGHYACEDADFTLQL 530

Query: 172 FKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              L P              E ++  +   +   G  VD A     +  +  E  +L+Q 
Sbjct: 531 HHALRPRVAADAGLERIYQLEIQVSRVLTVVERNGVKVDAAELGRQSHRLGQEMLQLEQR 590

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
              L      +    ++L   LF    L +   T     +T + VL+   +  P    + 
Sbjct: 591 AYELAGQP-FNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLTRLAQDYPLPQVLL 649

Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             R   S+      + L   +N+  GR+        A  TGR +      QN+P  + + 
Sbjct: 650 EYR-GLSKLKSTYTDKLPRMINARTGRVHTHYSQA-AVVTGRLASSDPNLQNIPVRTEAG 707

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      VR   +A  G  LV AD + IE R++A ++ + 
Sbjct: 708 RR-------------------------VREAFVAEHG-VLVSADYSQIELRIMAHVSDDA 741

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF  G+D++  T +  F VA  +V  DQR   K +   L Y  G          + 
Sbjct: 742 NLQQAFAAGKDIHRATASEIFGVALDEVGADQRRAAKAINFGLIYGMGV-----FGLASN 796

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +   A     +     +     +    ++   +    +   G   +            
Sbjct: 797 LGITRDAAQAYIDRYFARYPGVAQYMEHTRQLARQQGYVETVFGRRLQL---------PD 847

Query: 517 VSEL----WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +            +A       G A    K   V +                        
Sbjct: 848 IRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLD------------------- 888

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                           R  T                     M+          + VHDE+
Sbjct: 889 --------------AERLATR--------------------MI----------MQVHDEL 904

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + E PD +     + L  LM         +PL AE      +
Sbjct: 905 ILEVPDGELDAVRARLPELMCGVAR--LRVPLVAEVGVGPNW 944


>gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
 gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798]
          Length = 930

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 108/710 (15%), Positives = 203/710 (28%), Gaps = 173/710 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDPVMPQVL 57
            +  D ET     +             ++  +F                      +   L
Sbjct: 340 YIAFDTETSGKNVMES----------DLVGVSFSPKAGIAYYVPINGFSDDGTKDLLDEL 389

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG-EA 115
              LE      +AHN+ F+   L     + +    +  T + A      S  LK +    
Sbjct: 390 SPLLE-GGPKKIAHNAKFDYMALYKH-GIRVSPL-YFDTSIAAFLLNETSVGLKDLAATR 446

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +    M     LI                K     +      Y   D  +T  +F  L
Sbjct: 447 LGIQ---MTTIDSLI----------GKGKNQKTMLEVSVDECARYACADADMTFRLFTML 493

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E             + E  L  +   +   G  +D     +L+  +  +   ++ ++  +
Sbjct: 494 EKEIVERKLQDLFYTLEMPLVPVLADMEMTGVAIDADALKSLSTKLYEQIRDIESQIYEI 553

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                 + +  ++L  +LF + GL          +T    L +     P    + + R  
Sbjct: 554 AGY-EFNLKSPQQLSKFLFQDLGLKGIRKTSKGYSTDAATLEALSGQHPVIDLILSYRQ- 611

Query: 283 ASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            ++     ++ L   +  S GRL        ++ TGR +      QN+P  S   +E   
Sbjct: 612 LTKLKDTYVDALPLMVSRSTGRLHTNFSQ-TSAVTGRLASSDPNLQNIPIRSSLGKE--- 667

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA----------SEGKKLVVADLAGIEARVLAW 391
                                 VR   +A           E   L+ AD + IE RVLA 
Sbjct: 668 ----------------------VRKAFVAGSPEKNNAIFDEPSVLLSADYSQIELRVLAH 705

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +  E    +AF    D++  T +R F V    V  + R +GK +                
Sbjct: 706 VTDEPKLKEAFSRDIDIHALTASRLFGVPIESVDDNMRRMGKTINF-------------- 751

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++                                  A +            K + 
Sbjct: 752 GIIYGMSGFRL------------------------------ARDTGLEQREANLFVKRYM 781

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            +  RV   + +L +  E+                             +  P GR     
Sbjct: 782 DQFPRVKAYFEQLIKEAEK--------------------------KGYVETPLGRRRYLP 815

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
           D+ ++        R+               +Q ++ DI+ + M++   A         ++
Sbjct: 816 DITSSNPQRREAARR---------AAINMPIQGMAADIIKQAMIDVHSALEREGIKAKMI 866

Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           L VHDE++ E  ++    A+  +   M++       +PL  E      + 
Sbjct: 867 LQVHDELLFEVAESQLDRAAEVIVREMSTAFD--LSVPLVVEAEYGPNWG 914


>gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
 gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776]
          Length = 957

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 112/710 (15%), Positives = 205/710 (28%), Gaps = 171/710 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-----DDHPVELWD--------CVH 49
            + ID ET     L             ++ +A  +                       + 
Sbjct: 376 QICIDLETTGLDPLRD----------EIVGWAIAWAAQHGQPGRAVYLPVLGPPGSVLLD 425

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL--- 105
              + Q LK  LEN    ++  N  F+   ++    + I      + T+V          
Sbjct: 426 GTAVVQTLKPILENPQCQLINQNVKFDLLAMRK---VGIRPATIGLDTMVGDYLLDAGAR 482

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              L+ +G+            K L A               K  ++       EY   D 
Sbjct: 483 SHNLEVLGQ------------KYLSAATIPISDLLGSGKNQKTMNQIEIERVAEYATEDA 530

Query: 166 TVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
            +   +   +E               E+ L  +   +  +G  VDV      +Q + +  
Sbjct: 531 ELVVRMAPIIESQLQEAGLWKLYDEVEKPLIPVLADMEFKGIKVDVPELERQSQELSITL 590

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
            +L  E+  L      +     +L+  LF E  L ++  T+   +T Q VL     L P 
Sbjct: 591 ARLMSEIHELAG-REFNIDSPMQLRKILFEELKLPVQKKTKTGPSTDQEVLELLAPLHPL 649

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             ++  +R   ++     L+ L   ++   GR+  +   + A+ TGR S      QN+P 
Sbjct: 650 PAKITEHRH-LTKLKGTYLDALPLLVHPQSGRIHTSFNQVVAA-TGRLSSSDPNLQNIPI 707

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLA 390
            +                              +R   ++     +LV AD + IE R+LA
Sbjct: 708 RTPEG-------------------------SRIRRAFVSCDPEWRLVCADYSQIELRMLA 742

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
             + +   + AFE GED++    A+   VA   VT D R I K +               
Sbjct: 743 HFSQDPALVSAFEHGEDIHRLVAAQVHQVALEDVTSDMRRIAKAVN-------------- 788

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G +    +                                      A       +
Sbjct: 789 FGVMYGQSPYGLSAA------------------------------LGISREAATTFIDEY 818

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
             +++ V+          ++ +  G A                           GR    
Sbjct: 819 FTRYAGVTTFM---ENVLDECLATGYARTIL-----------------------GRRRPI 852

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------I 624
             V   R   N       R           ++Q  + D++   M+              +
Sbjct: 853 EGVRGPR-ERNRNRNMAERTGI------NTVIQGSAADLIKMAMIRVHHRLERENHPGQL 905

Query: 625 VLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +L +HDE+V E P        +++   MT        +PL+ +      +
Sbjct: 906 LLQIHDELVLEAPAHLAEELGALVSEEMTKALP--LDVPLEVDVAIGTNW 953


>gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591]
 gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591]
          Length = 928

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 105/698 (15%), Positives = 197/698 (28%), Gaps = 155/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     LT            ++  +              HD            + 
Sbjct: 353 SFDTETDGLDTLT----------ANLVGISLAIKPGEAAYLPLGHDYLDAPMQLDRDKVL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            VLK  LE+  V  +  N  F++ V+     +D+       T++ +        L +V  
Sbjct: 403 AVLKPLLEDESVAKIGQNLKFDKGVMARY-GIDLRGIA-FDTMLESYV------LDSVAG 454

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S        L  +    E            ++        Y   D  VT  + + 
Sbjct: 455 RHDMDSLSDRY---LQHKTITFEEIAGKGKNQLTFNQIPLEQAAVYAAEDADVTLRLHET 511

Query: 175 LEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L      +             L  +   +   G  +D  +    +Q +     +L+ +  
Sbjct: 512 LWAKLEPQPELCKVFQNIDMPLVPVLSRMERTGVLIDTTILGEHSQELTQRLAELEVQAH 571

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L T L+ +  L +   T     +T + VL+      P    +  +
Sbjct: 572 ELAG-EAFNLSSPKQLGTILYEKLQLPVIKKTPKGAPSTNEEVLAELALDHPLPKLILEH 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++      + L + +N   +   T      + TGR S      QN+P  +      
Sbjct: 631 R-ELAKLKSTYTDKLPQMINPLTKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEQGRR- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA EG  ++ AD + IE R++A ++ +   L
Sbjct: 689 ------------------------IRQAFIAPEGYHILAADYSQIELRIMAHLSRDAGLL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T A  F +   +VT +QR   K +   L Y   A        +  L +
Sbjct: 725 RAFSNGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSA-----FGLSRQLAI 779

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    N   E +   + +    ++   +        G          R   SR   
Sbjct: 780 PRNEAQKYMNLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLYLPDIHSRNAMSR--- 836

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +A       G A    K+  + +    + +  L+ ML                 
Sbjct: 837 --KAAERAAINAPMQGTAADIIKKAMIAIDGWLQQEKPLVTML----------------- 877

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH----DEIVCE 635
                                 +Q                    +V  VH    DE    
Sbjct: 878 ----------------------MQ-------------VHDE---LVFEVHHSVLDE---- 895

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   ++ + +LM         +PL+ +      +
Sbjct: 896 -------ASAKIRNLMEGCMQ--LDVPLQVDIGTGSNW 924


>gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701]
 gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701]
          Length = 997

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 109/731 (14%), Positives = 205/731 (28%), Gaps = 180/731 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD----------- 50
           + +D ET S                 ++     + +    +      H            
Sbjct: 384 IALDTETTSLNPF----------QAELVGVGLCWGEGSSDLAYIPIGHQPPSPAPSADLL 433

Query: 51  --------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
                                 +   L   LE+        N+ ++R +L     L +  
Sbjct: 434 TPASAEPPADSAVLSQQLPLDQVLTALAPWLESARHPKTLQNAKYDRLILLRH-GLSLE- 491

Query: 91  HRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              + TL+            L+ + E                       +   L  + + 
Sbjct: 492 GVVMDTLLADYLRDANAKHGLEVLAER---------------NFGFTPTSFSELVAKGET 536

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------------EQELWYLDQTINDRG 196
                      YC  DV VT  +   L     +            E  L  +   +   G
Sbjct: 537 FAAVPIAAAARYCAMDVHVTWRLTPLLRGQLQQLGEALPKLLDQVELPLEPVLARMEATG 596

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--L 254
             +D     TL++ +      L+            +    ++L   LF   GL  +    
Sbjct: 597 IRIDKPYLATLSEELAGTLASLEAGAREAAGV-EFNLASPKQLGELLFETLGLERKKSRK 655

Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQF 310
           T+   +T   VL       P    V  +R   S+     ++ L   +  + GR+      
Sbjct: 656 TKTGWSTDAAVLEKLAGDHPVVPLVLEHR-TLSKLKSTYVDALPALVEPETGRVHTDFNQ 714

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P  +                           S  +R   + 
Sbjct: 715 AV-TATGRLSSSNPNLQNIPIRTE-------------------------FSRRIRKAFLP 748

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            EG +L+ AD + IE R+L  ++GE+  ++A+  G+D++  T      +   +VT D+R 
Sbjct: 749 QEGWQLISADYSQIELRILTHLSGEEVLVEAYANGDDVHALTARLL--LDKDEVTADERR 806

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
           +GK +   + Y  GA   Q+ A  TG++ +        +   + +     F    +    
Sbjct: 807 LGKTINFGVIYGMGA---QRFARETGVSQS--QAKEFLSKYKQRYPKVFAFLELQERLAL 861

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                +  +G                                           R  P  +
Sbjct: 862 SRGYVETILG-------------------------------------------RRRPFAF 878

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                  L    P        ++    +       Q  R            +Q  S DI+
Sbjct: 879 DPGGLGRLRGKPP-------EEIELEVARRAGMEAQQLRAAANAP------IQGSSADII 925

Query: 611 AEGMMNATK------AGYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPL 663
              M+   +          ++L VHDE+V E  P+  E   + +  +M +       +PL
Sbjct: 926 KLAMVQLDQQLRASGLPARLLLQVHDELVLEAAPEALEPVLAAVKQVMENAVRLL--VPL 983

Query: 664 KAEGYESKRYR 674
             +      + 
Sbjct: 984 LVDTGVGPNWM 994


>gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
 gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044]
          Length = 883

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 108/701 (15%), Positives = 203/701 (28%), Gaps = 161/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PVMPQVLK 58
             +  D ET             +     ++   F                      + L 
Sbjct: 314 KEICFDTETT----------HWHPLKAELVGIGFCIKQGAAWYIPMNGKLGLEKALKKLA 363

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA 115
              EN+ +   AH+  ++  +LK    + +       T++ +          +L A+   
Sbjct: 364 PLFENSRIGFYAHHLKYDLHILKNY-GISLANIS-FDTILASYILTPHLRQHSLDALTLE 421

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                     GK  I                             YC  DV  T  + +  
Sbjct: 422 H--------FGKTKIPT----SDLIGKGKNQITMLEVPIEKVCAYCCEDVDYTYRLKQIF 469

Query: 176 EPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                K +           L  +   +   G  +D  +  TL + V+ +  +L+ E+ ++
Sbjct: 470 ASELKKRKLEPLLFDLELPLLKVLSKMEREGIFLDAPILKTLEKAVNTDLQRLENEIHAI 529

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282
                 + +  ++L   LF +  +     T    +T   VL + +     A ++   R  
Sbjct: 530 -ADEPFNLKSPKQLSGILFEKMKIPPPKKTATGYSTSAEVLETLQNEYAIAKKMLEFR-S 587

Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             +     + TL + +N   GR+  T     A+ TGR S      Q +P  +    E   
Sbjct: 588 LEKLRSSYIETLPKEINPKTGRIHPTFNQSVAA-TGRLSCQDPNLQQIPIRTPLGRE--- 643

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR      + G   + AD + IE R+LA  + +   + 
Sbjct: 644 ----------------------VRKAFRPEKQGWSYLSADYSQIELRLLAHFSEDPTLIS 681

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  ED++  T A   N+   QVTK+QR                               
Sbjct: 682 AFENNEDIHTHTAATVLNIPLEQVTKEQRRQA---------------------------- 713

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                            A NF     +     + E            K + Q++ RV + 
Sbjct: 714 ----------------KAVNFGILYGQQAWGLSKELGISLEEASAFIKTYFQRYQRVKDF 757

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +    E+T + G+A+                          GR     ++ +     
Sbjct: 758 ---VESCKEKTRKTGRAMTII-----------------------GRERPIPEIDSKNP-- 789

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVC 634
                   R            +Q  + D++ + M+   +          ++L +HDE++ 
Sbjct: 790 -QIRGAAERLA------VNTPLQGTAADLIKKAMIVIDEKLMRGQHLGFMILQIHDELIF 842

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
           E PD +      L    M     +   +PL  +    K ++
Sbjct: 843 EIPDFEITAIEQLVISSMEGV--YQLRVPLTVDVSIGKNWK 881


>gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038]
          Length = 750

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 104/699 (14%), Positives = 198/699 (28%), Gaps = 156/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 174 AFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVL 223

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +D+       T++ +           + +
Sbjct: 224 ATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIA-FDTMLESYVLDSVAGRHDMDS 281

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 282 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 329

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 330 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEK 389

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 390 QAHEL-AEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 448

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 449 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNEE 506

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G  ++ AD + IE R++A ++ +
Sbjct: 507 GRR-------------------------IRQAFIAPKGYCIMAADYSQIELRIMAHLSQD 541

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF  G+D++  T A  F     +VT +QR   K +   L Y   A          
Sbjct: 542 NGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSA-----FGLAR 596

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +   E +     +    ++   E        G          R  + 
Sbjct: 597 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANR 656

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +        G A    KR  + +    + +   ++ +             
Sbjct: 657 R-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRV------------- 698

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH      
Sbjct: 699 -------------------------IMQ-------------VHDE---LVFEVH------ 711

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++   +A   +  LM  +   A  +PLK +      +
Sbjct: 712 --ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 746


>gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2]
 gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2]
          Length = 1013

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 106/711 (14%), Positives = 192/711 (27%), Gaps = 164/711 (23%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
             + ID ET S   +             ++  +              H             
Sbjct: 423  IIAIDTETSSLDPM----------QAELVGLSLCLAPGRAAYVPLRHRGEGAGDLFGGAD 472

Query: 51   --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                          LK  LE  DV  +A N+ F++ VL       I +     TL+L+  
Sbjct: 473  LVPGQLDSDETLARLKPMLEAPDVLKIAQNAKFDQLVLAQ---RGIRLAPVDDTLLLSYV 529

Query: 103  NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                     +  + E           G   I                    R A     E
Sbjct: 530  LDAGRTDHGMDVLAEKY--------FGHRPIQFGA----VAGSGRTFIGFARVALDKATE 577

Query: 160  YCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
            Y   D  VT  +++ L+P            + E+ +      +  RG  +D A+   L+ 
Sbjct: 578  YSAEDADVTLRLWRVLKPRLAAERMSAVYETLERPMVETLARMERRGVSIDRAILSRLSG 637

Query: 210  IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265
                +  +L+  +  L      +    ++L   LF + GL     T     +T   VL  
Sbjct: 638  EFAQDMARLEAVIFELAG-ESFNLGSPKQLGDILFGKMGLAGARKTATGAWSTAAGVLDD 696

Query: 266  NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
              +          +  + S+      + L   +N +     T   L A+ TGR S     
Sbjct: 697  LAEQGVPLAARILDWRQLSKLKSTYTDALPSYVNPETGRVHTSYALAATTTGRLSSSEPN 756

Query: 326  PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
             QN+P  + +  +                         +R   IA  G+KL+ AD + IE
Sbjct: 757  LQNIPVRNEAGRK-------------------------IRKAFIAPPGRKLISADYSQIE 791

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
             R+LA +A       AF    D++  T +  F V    +  + R   K +   + Y   A
Sbjct: 792  LRLLAHIADISQLRAAFAENLDIHAMTASEMFGVPVEGMPPEVRRRAKAINFGIIYGISA 851

Query: 446  KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                       L +             E +     +    ++   E+       G  C  
Sbjct: 852  -----FGLANQLAIPREEAGAYIKRYFERFPGIRAYMDATKQFARENGYVTTIFGRKCHY 906

Query: 506  VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
             +      +           +A       G A    +R                      
Sbjct: 907  PRIT--ASNPSERAFN---ERAAINAPIQGSAADIIRR---------------------- 939

Query: 566  RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                          +      L +               +S     + ++          
Sbjct: 940  -------------AMVRMDEALEKA-------------GLSA----QMLLQVHDE----- 964

Query: 626  LTVHDEIVCETPDTDEFN-ASMLYHLMTSNPS--WAKGLPLKAEGYESKRY 673
                  +V E PD +      ++  +M   P       +PL+ +   ++ +
Sbjct: 965  ------LVFEAPDEEIDATIDVVRKVMVDAPHPFLQLAVPLQVDAKAAQNW 1009


>gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617]
          Length = 929

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 203/701 (28%), Gaps = 160/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L+            +I  +F             HD            + 
Sbjct: 353 AFDLETDSLDTLS----------ANIIGLSFATAPGEAAYLPVAHDYLDAPEQLDRSDVL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F+R VLK   ++++   R   T++ + +         +  
Sbjct: 403 ARLKPLLEDPQAQKVGQNLKFDRGVLKRY-DIELQGIR-FDTMLESYALNSVAGRHDMDT 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L  +    E            ++ A      Y   D  VT ++
Sbjct: 461 LASR------------WLNHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   KEQ            L  +   I   G  +   +  T +Q +     +L+ 
Sbjct: 509 HVKMWPELEKEQGPKNVFEHVEMPLVPVISRIERNGVLIAPGILATHSQELGSRLAELEL 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+T LF + G+     T     +T + VL+      P    +
Sbjct: 569 KAHELAG-EPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 628 LEHR-GLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEG 686

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA +G ++V AD + IE R++A ++ ++
Sbjct: 687 RR-------------------------IRQAFIAPQGHRIVAADYSQIELRIMAHLSQDK 721

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF + +D++  T A  F V+  +V+ +QR   K +   L Y   A        +  
Sbjct: 722 GLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSA-----FGLSRQ 776

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           LN+         +   E +     +    +E   +        G          R     
Sbjct: 777 LNIGAGEAKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGR---------RLYLPD 827

Query: 517 VSE----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +            +A       G A    KR  + +    + + +  + +          
Sbjct: 828 IKASNAMRRKAAERAAINAPMQGTAADIIKRAMIAVDRWLEQQPSPEVKM---------- 877

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                                       I+Q                    +V  VH   
Sbjct: 878 ----------------------------IMQ-------------VHDE---LVFEVH--- 890

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                D  E   + +  LM  +      +PL+ +      +
Sbjct: 891 ----ADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 925


>gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 929

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 104/697 (14%), Positives = 200/697 (28%), Gaps = 153/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET     LT            +I  +F             HD            + 
Sbjct: 354 AFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
            + K  LE+  +  +  N  F++ V++   ++D+       T++ +           + +
Sbjct: 404 ALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIA-FDTMLESYVLDSVAGRHDMDS 461

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT  +
Sbjct: 462 LAERY------------LSHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHL 509

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            ++L                    L  +   I   G  +D A+    ++ + +   +L+ 
Sbjct: 510 HQKLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTIRLAELET 569

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L           +T + VL+      P    +
Sbjct: 570 QAYELAG-EEFNLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLI 628

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N   +   T      + TGR S      QN+P  +   
Sbjct: 629 LEYR-GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 687

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA +G  +V AD + IE R++A ++G++
Sbjct: 688 RR-------------------------IRQAFIAPKGYSIVAADYSQIELRIMAHLSGDK 722

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G D++  T +  F +A  +VT +QR   K +   L Y   A        +  
Sbjct: 723 GLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSA-----FGLSRQ 777

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           LN+         N   E +   +++    ++   EH       G          R   +R
Sbjct: 778 LNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMAR 837

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +A       G A    K+  + +    +                       
Sbjct: 838 -----KGAERAAINAPMQGTAADIIKKAMIAIDDWLQKD--------------------- 871

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                              K+                M         +V  +HD ++   
Sbjct: 872 -----------------TPKV-------------KMIM-QVHDE---LVFEIHDSVI--- 894

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               E + S +  LM         +PL+ +      +
Sbjct: 895 ----EESISKIKALMEGCMQ--LNVPLQVDIGTGMNW 925


>gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
 gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114]
          Length = 933

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 93/711 (13%), Positives = 189/711 (26%), Gaps = 168/711 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    ++T            ++  +   +         +H             
Sbjct: 347 YVAVDTETTGLNEMT----------AELVGISLCVEPGTACYIPLIHKAAGSDDLFGSDD 396

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                       ++LK  LE+  +  +  N  ++  V      + I +     T++++ +
Sbjct: 397 LAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKVFAQ---VGITVAPIDDTMLMSYA 453

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    + A+ E              L       +             +        
Sbjct: 454 MHGGLHGHGMDALSERY------------LGHTPLPIKPLLGSGKSAITFDKVPLSEAVP 501

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  VT  ++++ +P   +          E+ +  +   +   G  VD      ++ 
Sbjct: 502 YAAEDADVTLRLWQQFKPALHRAQVTKVYETLERPMVAVLADMERAGIKVDRDTLSRMSN 561

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+ +L      +    ++L   LF E GL      +T    T   VL  
Sbjct: 562 AFSQKMAALEDEVYTLVGRK-FNVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLED 620

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    ++ + R   S+      + L + +N D     T   +  + TGR +     
Sbjct: 621 LATEHELPRRILDWRQ-LSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 679

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A EGK LV  D + IE
Sbjct: 680 LQNIPIRSEEGRR-------------------------IREAFVAEEGKTLVALDYSQIE 714

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A       AF+ G+D++  T +  F+V   ++T + R   K +   + Y    
Sbjct: 715 LRILAHIADIPALKTAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISG 774

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                      L +         +   E +     +    +    EH   +   G     
Sbjct: 775 -----FGLARNLRIPRSEAQGFIDRYFERFPGIRAYMDDTKAFAKEHGYVETLFGRRIHT 829

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                      +     +   A    I                                 
Sbjct: 830 ---------PNIGAKGPQAGFAARAAINAPI----------------------------- 851

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                           T    + R                  ++ A+ ++          
Sbjct: 852 --------------QGTAADVIRRAMIRMPAAI--------AELPAKMLLQVH------- 882

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
               DE++ E     +         +M S   P     + L  +  +   +
Sbjct: 883 ----DELLFEVDQGAQDALIEAARSVMESAADPVVHLDVKLTVDAGQGPNW 929


>gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
 gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA]
          Length = 952

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 205/694 (29%), Gaps = 148/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            L ID ET     +          +  ++  +F   ++         +      +    +
Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSNAENRAYYVPVPANRDEALKIVNEFR 429

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN +   V  N  ++  VL+    + +   +   T++            +  + E  
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVK-GKLFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +     ELI                K            Y   D  VT ++   LE
Sbjct: 488 --LRYRTIHIDELIG---------SRGKNQKSMRDLPPEDVYRYACEDADVTLKLKNVLE 536

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       ++   +   ++++E+ +L 
Sbjct: 537 KELKKQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALA 596

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
            G   +    +++   LF +  +      T+T    T + VL S +       ++   R 
Sbjct: 597 NGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYR- 655

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N   GR+  +      + TGR S      QN+P      +E  
Sbjct: 656 GLKKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE-- 712

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I  +G +   AD + IE R++A ++ ++  + 
Sbjct: 713 -----------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMID 749

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ + V  ++VT D R   K     + Y               +N++
Sbjct: 750 AFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISV-----FGLAERMNVS 804

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +   E +   + +     +   E+   +       +R       +++ V   
Sbjct: 805 RQEAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHR--KRFLPDINSRNAVVRGY 862

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +        G A    K                        SL+Y+ + +N    
Sbjct: 863 ---AERNAINAPIQGSAADIIKV---------------------AMSLIYQRIQSNN--- 895

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                                        L   M+          L VHDE+    P+ +
Sbjct: 896 -----------------------------LKAKMI----------LQVHDELNFSVPEAE 916

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M     +   +PLKA+    K +
Sbjct: 917 KEIIQKIVIEEMERA--YRMLVPLKADFGWGKNW 948


>gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149]
 gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149]
          Length = 933

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 95/711 (13%), Positives = 189/711 (26%), Gaps = 168/711 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    D+T            ++  +   +         +H             
Sbjct: 347 YVAVDTETTGLNDMT----------ADLVGVSLCVEPGKACYIPLIHKAASSDDLFGSDD 396

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                       ++LK  LE+  +  +  N  ++  +      + I +     T++++ +
Sbjct: 397 LAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKIFAQ---VGITVAPIDDTMLMSYA 453

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    + A+ E              L       +             +        
Sbjct: 454 MHGGLHGHGMDALSERY------------LGHTPLPIKPLLGSGKSAITFDKVPLNDAVP 501

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  VT  ++++ +P   +          E+ +  +   +   G  VD      ++ 
Sbjct: 502 YAAEDADVTLRLWQQFKPALHRAQVTRVYETLERPMVAVLADMERAGIKVDRDTLSRMSN 561

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSS 265
               +   L+ E+ +L      +    ++L   LF E GL      +T    T   VL  
Sbjct: 562 AFSQKMAALEDEIYTLVGRK-FNVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLED 620

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    ++ + R   S+      + L + +N D     T   +  + TGR +     
Sbjct: 621 LATEHELPRRILDWRQ-LSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLASTDPN 679

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A EGK LV  D + IE
Sbjct: 680 LQNIPIRSEEGRR-------------------------IREAFVAEEGKTLVALDYSQIE 714

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A       AF+ G+D++  T +  F+V   ++T + R   K +   + Y    
Sbjct: 715 LRILAHIADIPALKAAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISG 774

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                      L +         +   E +     +    +    EH   +   G     
Sbjct: 775 -----FGLARNLRIPRSEAQGFIDRYFERFPGIRTYMDDTKAFAKEHGYVETLFGRRIHT 829

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                      +     +   A    I                                 
Sbjct: 830 ---------PNIGAKGPQAGFAARAAINAPI----------------------------- 851

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                           T    + R                  D+ A+ ++          
Sbjct: 852 --------------QGTAADVIRRAMIRMPAAIV--------DLPAKMLLQVH------- 882

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
               DE++ E     +         +M S   P     + L  +  E   +
Sbjct: 883 ----DELLFEVDQGSQGALIDAARSVMESAADPVVHLDVKLTVDAGEGPNW 929


>gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91]
 gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91]
          Length = 906

 Score =  366 bits (939), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 104/696 (14%), Positives = 206/696 (29%), Gaps = 150/696 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           + ID ET S   +          +  ++  +   +          H             +
Sbjct: 331 VSIDTETTSLNPM----------EAELVGLSLCTEPGHAAYIPLAHHYQGVPSQLNREQV 380

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            Q LK  LEN+D+  V  N  ++R V      + +       TL+ +       +     
Sbjct: 381 LQRLKPWLENSDIPKVGQNLKYDRHVFANH-GVMLNGIA-HDTLLQSYVLESHLSHDLDS 438

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A +    +     +                +     +   +  G Y   D  +   +  
Sbjct: 439 LARRHLDIQTISYDD----------VTGKGAKRIGFEQVEIQQAGIYAAEDADIPLRLHH 488

Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P+              E  L  +   I   G  +D  L    +  +  +   L+Q+ 
Sbjct: 489 FLYPIISKDAHLGHIYQQIEMPLLEVLFRIERNGVLLDTDLLREQSGELARQLVILEQQA 548

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
            SL      +    ++++  LF +  L +   T     +T + VL       P    + +
Sbjct: 549 HSLAGRA-FNLNSTKQIQEILFGQHKLPVIKKTPKGAPSTDEEVLQQLALDYPLPKILLD 607

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++     ++ L + +N       T      + TGR +      QN+P  +     
Sbjct: 608 YR-SLAKLRSTYIDKLPQMVNRQTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTPEGRR 666

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA  G  ++ AD + IE R++A ++ +   
Sbjct: 667 -------------------------IREAFIAPSGWYIISADYSQIELRIMAHISQDAGL 701

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF  G+D++  T A  F ++  QV  +QR   KV+   L Y        +    T L 
Sbjct: 702 IRAFLGGQDIHSATAAEVFGISVGQVNAEQRRYAKVINFGLIYGMS-----EFGLATQLG 756

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           ++  A     +     +    ++ +  +E   ++   +  +G   +       Q + R+ 
Sbjct: 757 IDRSAARAFIDRYFARYPGVADYMQRTRELARQNGYVETVLGRRLQLPDIRSSQHNRRM- 815

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +A       G A    K   + +                              
Sbjct: 816 ----GAERAAINAPMQGTAADIIKLAMISVHQW--------------------------- 844

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                             L +  +Q+         M         +VL    E++    +
Sbjct: 845 ------------------LVKAPLQS------KLIM-QVHDE---LVL----EVI----E 868

Query: 639 TDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            + F     L  LM +       +PLK E    K +
Sbjct: 869 DELFVVKENLIILMENTFK--LDVPLKVEVGVGKNW 902


>gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 591

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 206/548 (37%), Positives = 296/548 (54%), Gaps = 16/548 (2%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET   I +   G   YAE V V+LFA+   D PV +WD      +P  L++A+
Sbjct: 3   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPGRLQKAI 61

Query: 62  ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            + D  +  HNS+F+RTVL+     L   + RW  T+V A ++GLP AL A+ E L +  
Sbjct: 62  ADPDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWRDTMVQALAHGLPGALGALCEVLGVPQ 121

Query: 121 Q--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              K +EGK LI  FCK         R     H E WR F  Y   D+   RE+ KRL  
Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVHKRLPK 181

Query: 178 LSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            + K  E  LW+ DQ INDRG C+DV LA    + VD E+ +L +  + +T G V ++  
Sbjct: 182 WNYKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMTDGEVQAATQ 241

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K  +L+
Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRMAD-PDLPSAVKELLAIRLQASTTSTSKYKSLM 300

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353
           + ++SDGRLRGTLQF GASRTGRW+G +F PQNLPRPS   +++D+ I  L         
Sbjct: 301 KGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGIEALKAGCADLLF 360

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408
            + +++ S  +R C++A EGKKLVV+DL+ IE R LAW+AGEQWKL AF         DL
Sbjct: 361 DNIMELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHAFREYDEGTGPDL 420

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YAR+FN++P  V K QR IGKVMEL LG+ GG  AF   A   GL+L+  A+    
Sbjct: 421 YKLAYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALP 480

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
           N   +   +A+N+     +    + + +     AC+ +K+ WR+ H    + W EL +  
Sbjct: 481 NIPRDVIREAKNWYDESVKRKATYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTV 539

Query: 529 EQTIENGK 536
              I    
Sbjct: 540 RAAIATPT 547


>gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
 gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16]
          Length = 931

 Score =  365 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 93/589 (15%), Positives = 175/589 (29%), Gaps = 85/589 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
                D ET S   +             ++  +F  ++         HD           
Sbjct: 352 DVFAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRD 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110
            +   LK  LE+     V  N  ++ +VL    N+++   +   T++ +           
Sbjct: 402 WVLAQLKPILEDDTQAKVGQNLKYDASVLARY-NIEMKGIK-HDTMLASYVYNSVGGKHD 459

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               AL+                   E       +    ++        Y   D  VT  
Sbjct: 460 MDSLALRFLQHS----------CISFEQIAGKGKKQLTFNQIELDQASPYAAEDADVTLR 509

Query: 171 IFKRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  RL     K++            L  +   I   G  +D       +Q +     +L+
Sbjct: 510 LHNRLMANIEKDEQLKAIYEEIEVPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLDELE 569

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQ 275
           Q+   +      +    ++L+  LF + GL         T +T + VL       P    
Sbjct: 570 QKAYEI-AEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPLPKL 628

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +   R   ++      + L + +N +     T      + TGR S      QN+P  +  
Sbjct: 629 ILEYR-GLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNDE 687

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G K++  D + IE R++A ++G+
Sbjct: 688 GRR-------------------------IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGD 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L AF+ G+D++  T A        QV+ +QR   K +   L Y   A          
Sbjct: 723 KALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSA-----FGLAK 777

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         N+  E +     +    +    E    +   G      +   R    
Sbjct: 778 QLGIPRGEAQDYMNTYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMR 837

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           R         +A       G A    K+  + +    + + +  + L  
Sbjct: 838 R-----KAAERAAINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 881


>gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
 gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641]
          Length = 932

 Score =  365 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 106/699 (15%), Positives = 202/699 (28%), Gaps = 156/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 356 AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRDWVL 405

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110
             LK  LE+     V  N  F++++L      DI +      T++ +           + 
Sbjct: 406 AQLKPLLEDDKALKVGQNLKFDQSMLARY---DINLRGIAFDTMLESYVLNSVAGRHDMD 462

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           ++ E              L  +    E            ++ A    G Y   D  VT +
Sbjct: 463 SLAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQ 510

Query: 171 IFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +   L P               E  L  +   I   G  +D  +    ++ + +   +L+
Sbjct: 511 LHLVLWPKLQQSEGLKQVFQEIEMPLLPVLSRIERTGVLIDQNILAAHSKELTIRLDELE 570

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           ++   L      +    ++L+  L+ +  L +   T     +T + VL+      P    
Sbjct: 571 KQAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKV 629

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +   R   ++      + L   ++   GR+  +      + TGR S      QN+P  + 
Sbjct: 630 ILEYR-GLAKLKSTYTDKLPLMISPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIPVRNE 687

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA +G +++ AD + IE R++A ++ 
Sbjct: 688 EGRR-------------------------IRQAFIAPKGYRIMAADYSQIELRIMAHLSQ 722

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  F +   +VT +QR   K +   L Y   A         
Sbjct: 723 DKGLLAAFAAGKDIHRATAAEVFGLPLEKVTHEQRRSAKAINFGLIYGMSA-----FGLA 777

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             LN+         +   E +     +    ++   +        G      +   R   
Sbjct: 778 RQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPEIHSRNAT 837

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +        G A    KR  + +    + +    + +            
Sbjct: 838 RR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPKVRV------------ 880

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                     I+Q                    +V  VH E V 
Sbjct: 881 --------------------------IMQ-------------VHDE---LVFEVH-ESVL 897

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E+ +        +  LM  +   A  +PLK +      +
Sbjct: 898 ESTE------QKVRELMEQSMQLA--VPLKVDIGVGDNW 928


>gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
 gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1]
          Length = 927

 Score =  365 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 101/699 (14%), Positives = 187/699 (26%), Gaps = 157/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S   +             ++  +F  +          HD              
Sbjct: 352 ALDTETDSLDPMR----------ARLVGLSFAAEPGRAAYLPLGHDYPGAPAQLGYEQAL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
            +L+  L +  V  +  +  ++  VL+    + +  +    TL+ +           + +
Sbjct: 402 DLLRPLLADPAVRKIGQHGKYDLHVLRRH-GVAVAGYA-DDTLLESFVLDSGNARHDMDS 459

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                L     K E       R  P  + A      Y   D  +T  +
Sbjct: 460 LALRH------------LGYTTVKYEDICGKGVRQIPFSQCALDDATRYAAEDADITLRL 507

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L                 E  L  + + I   G  VD+         +     +  +
Sbjct: 508 HRVLSARLQAEPQLQAVYRDIEMPLVQVLERIEANGVLVDMDELRRQGADLSRRMLEAQE 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
              +L      +    ++L   LF E  L           +T +  L +   L      +
Sbjct: 568 RATALAG-RSFNLDSPKQLCALLFDELKLPALVKTPKGQPSTNEEALEAIADLHELPRII 626

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L E +N + GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 627 LEYR-GLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTDD 684

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KLV  D + IE R++A ++ +
Sbjct: 685 GRR-------------------------IRRAFVAPPGRKLVACDYSQIELRIMAHLSQD 719

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L AF +G D++  T A  F     +VT ++R   K +   L Y  GA          
Sbjct: 720 PGLLGAFASGADIHRATAAEVFGRPLEEVTVNERRAAKAINFGLMYGMGA-----FGLAR 774

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L ++              +    ++    +E   E    +   G          R    
Sbjct: 775 QLGIDRGQAQDYIALYFSRYPGVRDYMERTREQARERGYVETVFGRRLHLEYINARNAAQ 834

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           R         +A       G A    KR  + +     D                     
Sbjct: 835 R-----AGAERAAINAPMQGTAADIIKRAMIAVDAWIAD--------------------- 868

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                        R                        ++                +V E
Sbjct: 869 ----------HAQRARM---------------------LLQVHDE-----------LVFE 886

Query: 636 TPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +       S +  LM++       +PL  +      +
Sbjct: 887 ADEEFVPELVSRVPELMSAAGD--LSVPLVVDTGIGNNW 923


>gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
 gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697]
          Length = 952

 Score =  365 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 205/694 (29%), Gaps = 148/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            L ID ET     +          +  ++  +F   ++         +      +    +
Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSNAENRAYYVPVPANRDEALKIVNEFR 429

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN +   V  N  ++  VL+    + +   +   T++            +  + E  
Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVK-GKLFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +     ELI                K            Y   D  VT ++   LE
Sbjct: 488 --LRYRTIHIDELIG---------SRGKNQKSMRDLPPEDVYRYACEDADVTLKLKNVLE 536

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       ++   +   ++++E+ +L 
Sbjct: 537 KELKKQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALA 596

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
            G   +    +++   LF +  +      T+T    T + VL S +       ++   R 
Sbjct: 597 NGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYR- 655

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N   GR+  +      + TGR S      QN+P      +E  
Sbjct: 656 GLKKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE-- 712

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I  +G +   AD + IE R++A ++ ++  + 
Sbjct: 713 -----------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMID 749

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ + V  ++VT D R   K     + Y               +N++
Sbjct: 750 AFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISV-----FGLAERMNVS 804

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +   E +   + +     +   E+   +       +R       +++ V   
Sbjct: 805 RQEAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHR--KRFLPDINSRNAVVRGY 862

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +        G A    K                        SL+Y+ + +N    
Sbjct: 863 ---AERNAINAPIQGSAADIIKV---------------------AMSLIYQRIQSNN--- 895

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                                        L   M+          L VHDE+    P+ +
Sbjct: 896 -----------------------------LKAKMI----------LQVHDELNFSVPEAE 916

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M     +   +PLKA+    K +
Sbjct: 917 KEIIQKIVIEEMERA--YRMLVPLKADFGWGKNW 948


>gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 951

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 95/697 (13%), Positives = 197/697 (28%), Gaps = 155/697 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQ---VLK 58
            L ID ET     +          D  ++  +F   ++             + +     +
Sbjct: 380 ILSIDTETTGTEPM----------DAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFR 429

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN     V  N  ++  +L+    + +   +   T++            +  + E  
Sbjct: 430 PLFENEKSMKVGQNIKYDMIILQNY-GVQVK-GKLFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +     ELI                K            Y   D  VT ++   LE
Sbjct: 488 LH--YQTIHIDELIG---------ARGKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLE 536

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       +Q   V   ++++E+  + 
Sbjct: 537 KELKEQGAEHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA 596

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL S +       ++   R 
Sbjct: 597 G-ETFNISSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYR- 654

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N   GR+  +      + TGR S      QN+P      +E  
Sbjct: 655 GLKKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE-- 711

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I   G +   AD + IE R++A ++ ++  + 
Sbjct: 712 -----------------------IRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMID 748

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ + +    VT D R   K     + Y               + ++
Sbjct: 749 AFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISV-----FGLAERMGVS 803

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +   E +   + +     +   E+   +                        
Sbjct: 804 RQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIF--------------------- 842

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                ++R +P +  +           +G    Y +     + +
Sbjct: 843 --------------------HRKRFLPDINSR-----------NGVVRGYAERNAINAPI 871

Query: 581 NTTTRQLTREY---TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
             +   + +      Y      N         L   M+          L VHDE+    P
Sbjct: 872 QGSAADIIKVAMAHIYQRFQAYN---------LKAKMI----------LQVHDELNFSVP 912

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + ++     +    M     +   +PLKA+      +
Sbjct: 913 EAEKELVQKIVIEEMEQA--YHMHVPLKADCGWGNNW 947


>gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
 gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA]
          Length = 971

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 96/695 (13%), Positives = 200/695 (28%), Gaps = 148/695 (21%)

Query: 2   ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56
             +  +D ET     +T            ++  +F + ++         D      +   
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114
            + A E      V  N  ++  VL      ++       T+V            +  + E
Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  +    +ELI                K     +     +Y   D  VT ++   
Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNI 554

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           LE               E  L  +   I   G  VD       ++       ++++E+  
Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           L      +    +++   LF +  +      T+T    T + VL S +       ++  +
Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    +     ++ L   +N +     T      + TGR S      QN+P  +   +E 
Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  +G +   AD + IE R++A ++G+   +
Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMI 767

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G+D++  T A+ + ++  +VT++QR+  K     + Y               +N+
Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNV 822

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +        +   G   +R       ++S V  
Sbjct: 823 DRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGR--KRYLPDINSRNSVVRG 880

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                                          
Sbjct: 881 Y---AERNAINAPIQGSAADII-------------------------------------- 899

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 +      Y    +ENI                      ++L VHDE+       
Sbjct: 900 ------KAAMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPE 934

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +    M +   +   +PL+A+      +
Sbjct: 935 EKEKVQKIVIEEMENA--YHMQVPLRADCGWGSNW 967


>gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As]
          Length = 922

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 204/702 (29%), Gaps = 165/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
            ID ET S   +             +I  +              H             + 
Sbjct: 349 AIDTETDSLDPMR----------ARLIGISLSVTPGEAAYLPLAHAYPGAPEQLPMAEVL 398

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
           + L+  LEN D   +  N+ ++R V      + I  +    TL+ +       P +L ++
Sbjct: 399 ERLRPWLENADKPKLGQNAKYDRHVFANA-GVTIRGYA-HDTLLESYVIEAHKPHSLDSL 456

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                     +             E       +     + A  +   Y   D  +T ++ 
Sbjct: 457 VSRHLGRDDTLS-----------YEQVCGKGAKAITFDQVALDVATRYSGEDADLTLQVH 505

Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +RL P    +           ++  + Q I   G  VD  L    +  +  +   L+ + 
Sbjct: 506 QRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTLEAQA 565

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    +++   LF    L ++  T     +T + VL    +  P    + +
Sbjct: 566 FELAGGA-FNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEEVLEKLAEDYPLPRVILD 624

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+        L + +N D     T      + TGR +      QN+P  +     
Sbjct: 625 HR-SLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR 683

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A +G  +  +D + IE R++A ++ +   
Sbjct: 684 -------------------------IREAFVAPKGWLIASSDYSQIELRIMAHLSQDAGL 718

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF  GED++  T A  F V   +V+ DQR + KV+                    G++
Sbjct: 719 LAAFAAGEDIHRATAAEIFGVTSLEVSSDQRRMAKVINF--------------GLIYGMS 764

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A       +A +     +  ++  V+
Sbjct: 765 ------------------------------AFGLARNLGLERSAAQLYIDRYFARYPGVA 794

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +   +                             +    GR L   D+  +  
Sbjct: 795 AYMERTRKLAAE--------------------------QGYVETVFGRRLWLPDIHASGP 828

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632
                 R                +Q  + D++   M+         K    +V+ VHDE+
Sbjct: 829 RRAAAERA----------AINAPMQGTAADLIKMAMIAVDAALVREKLRSRVVMQVHDEL 878

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E P+ +       +  LM         +PL AE      +
Sbjct: 879 VLEVPEEETHWVREHIPRLMAGVAQ--LDVPLLAEMGLGANW 918


>gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36]
 gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36]
          Length = 951

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 94/697 (13%), Positives = 198/697 (28%), Gaps = 155/697 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQ---VLK 58
            L ID ET     +          D  ++  +F   ++             + +     +
Sbjct: 380 ILSIDTETTGTEPM----------DAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFR 429

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN     V  N  ++  +L+    + +   +   T++            +  + E  
Sbjct: 430 PLFENEKSMKVGQNIKYDMIILQNY-GVQVK-GKLFDTMLAHYVLQPELRHNMDYLAEIY 487

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +     +LI                K     +      Y   D  VT ++   LE
Sbjct: 488 LH--YQTIHIDKLIG---------ARGKNQKNMRDLSPEDVYRYACEDADVTLKLKNVLE 536

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       +Q   V   ++++E+  + 
Sbjct: 537 KELKEQGAEHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA 596

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL S +       ++   R 
Sbjct: 597 G-ETFNISSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYR- 654

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N   GR+  +      + TGR S      QN+P      +E  
Sbjct: 655 GLKKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE-- 711

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I   G +   AD + IE R++A ++ ++  ++
Sbjct: 712 -----------------------IRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIE 748

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ + +    VT D R   K     + Y               + ++
Sbjct: 749 AFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISV-----FGLAERMGVS 803

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +   E +   + +     +   E    +                        
Sbjct: 804 RQEAKELIDGYFETYPQVKEYMDKSIQVAREQGYVETIF--------------------- 842

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                ++R +P +  +           +G    Y +     + +
Sbjct: 843 --------------------HRKRFLPDINSR-----------NGVVRGYAERNAINAPI 871

Query: 581 NTTTRQLTREY---TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
             +   + +      Y      N         L   M+          L VHDE+    P
Sbjct: 872 QGSAADIIKVAMAHIYQRFQAYN---------LKAKMI----------LQVHDELNFSVP 912

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + ++     +    M     +   +PLKA+      +
Sbjct: 913 EAEKELVQKIVIEEMEQA--YRMQVPLKADCGWGNNW 947


>gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440]
 gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440]
          Length = 915

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 104/695 (14%), Positives = 190/695 (27%), Gaps = 146/695 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET              A+   ++  +F  + H        HD            + 
Sbjct: 337 AFDTETTGLD----------AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVL 386

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK  LE+     V  N+ ++  +L      +++    +  T++ +      +      
Sbjct: 387 LALKPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAY-DTMLESYVLNSTAT----- 440

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     + + K L       E       +    ++      G Y   D  +T  +  
Sbjct: 441 ---RHDMDSLAQ-KYLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHH 496

Query: 174 RLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQEL 222
            L+   ++   +  +   I              G  VD  L    +  + V+  +L+   
Sbjct: 497 ALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRA 556

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L T L+ + G+ +   T     +T + VL           +V  
Sbjct: 557 YELAG-ETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGYPLPEVLM 615

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                S+      + L   +N       T      + TGR S      QN+P  +     
Sbjct: 616 QYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRR 675

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G KL+ AD + IE R++A +A ++  
Sbjct: 676 -------------------------IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF    D++  T A  F VA   VT DQR   K +   L Y   A           + 
Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSA-----FGLAKQIG 765

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           ++        +     +     +    +    E    +   G            K+  + 
Sbjct: 766 VDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGR--RLYLPDINAKNPALR 823

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +      +        G A    KR  V +     +              V   V +   
Sbjct: 824 K---GAERTAINAPMQGTAADIIKRAMVKVDNWLSESGLDA--------RVILQVHDELV 872

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                             + E++VQ                        V DE       
Sbjct: 873 LE----------------VREDLVQ-----------------------QVKDE------- 886

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   +   M+        +PL  E      +
Sbjct: 887 --------IRQHMSQAAQ--LDVPLLVEAGVGANW 911


>gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4]
 gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4]
          Length = 971

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 95/695 (13%), Positives = 200/695 (28%), Gaps = 148/695 (21%)

Query: 2   ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56
             +  +D ET     +T            ++  +F + ++         D      +   
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114
            + A E      V  N  ++  VL      ++       T+V            +  + E
Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  +    +ELI                K     +     +Y   D  +T ++   
Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADITLKLKNI 554

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           LE               E  L  +   I   G  VD       ++       ++++E+  
Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           L      +    +++   LF +  +      T+T    T + VL S +       ++  +
Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    +     ++ L   +N +     T      + TGR S      QN+P  +   +E 
Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  +G +   AD + IE R++A ++G+   +
Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMI 767

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G+D++  T A+ + ++  +VT++QR+  K     + Y               +N+
Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNV 822

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +        +   G   +R       ++S V  
Sbjct: 823 DRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGR--KRYLPDINSRNSVVRG 880

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                                          
Sbjct: 881 Y---AERNAINAPIQGSAADII-------------------------------------- 899

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 +      Y    +ENI                      ++L VHDE+       
Sbjct: 900 ------KAAMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPE 934

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +    M +   +   +PL+A+      +
Sbjct: 935 EKEKVQKIVIEEMENA--YHMQVPLRADCGWGSNW 967


>gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 145/455 (31%), Positives = 223/455 (49%), Gaps = 19/455 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S  +L + G  +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +AL++  +   A N+ FER  L       +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+   E E +++DQ INDRG  +D  L +   +       +  Q  + LT     +
Sbjct: 181 FSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTGLA--N 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + G+  + L + +  ++L +    T    QV   R   S+S+V K  
Sbjct: 239 PNSPLQLKNWLHQQ-GVETDSLAKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP---TS 349
            + +AM  DG + G LQF GA+RTGRW+G +   QNLPR S    E  + +         
Sbjct: 295 AMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTAL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  +R+  I S+G    VAD + +EARV+AW++GE+W+  AF   ED+Y
Sbjct: 355 AMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQ 442
             + ++ F V   +     + R  GK+ ELALGY 
Sbjct: 415 CASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449


>gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
 gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855]
          Length = 971

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 96/695 (13%), Positives = 200/695 (28%), Gaps = 148/695 (21%)

Query: 2   ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56
             +  +D ET     +T            ++  +F + ++         D      +   
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114
            + A E      V  N  ++  VL      ++       T+V            +  + E
Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  +    +ELI                K     +     +Y   D  VT ++   
Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNI 554

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           LE               E  L  +   I   G  VD       ++       ++++E+  
Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           L      +    +++   LF +  +      T+T    T + VL S +       ++  +
Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    +     ++ L   +N +     T      + TGR S      QN+P  +   +E 
Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  +G +   AD + IE R++A ++G+   +
Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMI 767

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G+D++  T A+ + ++  +VT++QR+  K     + Y               +N+
Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNV 822

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +        +   G   +R       ++S V  
Sbjct: 823 DRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGR--KRYLPDINSRNSVVRG 880

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                                          
Sbjct: 881 Y---AERNAINAPIQGSAADII-------------------------------------- 899

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 +      Y    +ENI                      ++L VHDE+       
Sbjct: 900 ------KAAMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPE 934

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +    M +   +   +PL+A+      +
Sbjct: 935 EKEKVQKIVIEEMENA--YHMQVPLRADCGWGSNW 967


>gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414]
 gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414]
          Length = 970

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 105/705 (14%), Positives = 213/705 (30%), Gaps = 146/705 (20%)

Query: 8   FETRSPIDLT----KCGICKYAEDVCVILFAFGFD--DHPVELWDCVHD-------PVMP 54
            ET +  D+              D  ++     +             H         V+ 
Sbjct: 371 LETFTNPDIPVAWDTETSDLEPRDATLVGIGCCWGTQPDESAYIPIAHKFGENLSQDVVF 430

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
             L   L + D      N  F+R V   C  + +       T++ +       P  L  +
Sbjct: 431 AELSPILTSADYPKTFQNGKFDRLVF-RCQGIKLAGI-VFDTMLASYVLNPDTPHNLNDI 488

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              L+     ++  ++L+              + +     +    G YC   V  T ++ 
Sbjct: 489 S--LRYLGLILKSYEDLVP-------------KGQTIADISIASVGYYCCLQVHATFQLV 533

Query: 173 KRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           ++L     K            Q L  +   +   G C++ A  H L+Q ++++  KL++ 
Sbjct: 534 QKLREELEKFPALHKLLLEVEQPLEAVLAEMEYTGVCINSAYLHELSQQLEIDLAKLEET 593

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQ-AIQ 275
             S+      +    ++L   LF + GL  +         +T    L   +++     + 
Sbjct: 594 ATSIAG-ETFNLGSPKQLSVILFDKLGLSTKYSRKIKTGYSTDVATLEKLQEVDETGFVD 652

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                   S+     ++ L   +  D  RL         + TGR S      QN+P  + 
Sbjct: 653 AMMEYRTLSKLKSTYVDALPALVRPDTQRLHTNFNQ-TVTATGRLSSSNPNLQNIPIRTA 711

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                     S  +R   +   G  +  AD + IE R+LA ++ 
Sbjct: 712 -------------------------FSRQIRKAFLPESGYLMAAADYSQIELRILAHLSQ 746

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           E   L+A++  ED++  T    F    + +T D+R I K +   + Y  G+  F +    
Sbjct: 747 EPILLQAYQQNEDIHTVTARLVF--EKSDITSDERRIAKTINFGVIYGMGSLRFSR---- 800

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
               ++            E +     +   +++        +  +G          R+++
Sbjct: 801 -STGIDKSIANEFIKRFNERYPQVFAYLEGVKKQAISQGYVETILG----------RRRY 849

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
               +  N+  +  + +      +                                    
Sbjct: 850 ---VDFKNDSLRKLKNSKPEDIDL------------------------------------ 870

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHD 630
           +    L      L R            +Q  S DI+   M+       K    ++L VHD
Sbjct: 871 SKLKNLGPEDAGLLRSAANAP------IQGSSADIIKIAMIRMHEVLQKYQARLLLQVHD 924

Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+V E P  +       +  +M +  +    +PL  +      + 
Sbjct: 925 ELVFEVPPQEWEELQPQIKSVMENAVT--LSVPLLVDVRAGDNWM 967


>gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
 gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN]
          Length = 920

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 94/693 (13%), Positives = 193/693 (27%), Gaps = 147/693 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            L +D ET S   +          D  ++  +F  ++          +      M  + K
Sbjct: 349 ILSLDTETTSVDAI----------DAELVGLSFSVEEKEAFYVAISPNREEALNMVNIFK 398

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
              EN ++  V  N  ++  VLK    + +   +   T++            +  + E L
Sbjct: 399 PLYENEEILKVGQNIKYDYEVLKKY-GITLK-GKLFDTMIAHYLIQPELHHNMDYMAETL 456

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              + +    +++I              + K     A     +Y   D  +T  +   LE
Sbjct: 457 --LNYQTVHIEDIIG---------PKGKKQKNMRDLAPAEVSDYACEDADITLRLKNALE 505

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P              E  L  +   +   G  +D       ++I      K + E+  L 
Sbjct: 506 PKLKEVNAESLFWEIEMPLVRVLADMELHGIRLDTEALEETSRIFTERMNKYEAEIYELA 565

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL S +   P   ++   R 
Sbjct: 566 G-ETFNISSPKQVGEILFGKLQIMEKPKKTKTGQFVTSEEVLISLQSKHPIVEKILEYR- 623

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     ++ L + +        T      + TGR S      QN+P  +   +E   
Sbjct: 624 GIKKLLSTYIDALPKLVKPQTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKE--- 680

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R C I         AD + IE R++A ++ ++  ++A
Sbjct: 681 ----------------------IRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENMMEA 718

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D++  T A+ ++     VT  QR   K     + Y               +++  
Sbjct: 719 FRKGHDIHRATAAKIWHEDMENVTDAQRKKAKQANFGIIYG-----ITTYGLAQRMDIPN 773

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                      + +   + +    +E        +        R       +++ V    
Sbjct: 774 GEAKELIADYFKTFPKVQAYMEEAKEVARRKGYAETIFHR--RRYLADINSRNATVRGF- 830

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +        G      K                                     + 
Sbjct: 831 --AERNAINAPIQGSEADIIK-----------------------------------VAMV 853

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
              ++  RE                                 ++L VHDE+       ++
Sbjct: 854 NIHQRFEREQI----------------------------RSKMILQVHDELNFSVYPEEK 885

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                +    M +   +   +PL A+    K +
Sbjct: 886 ELVERIVLEEMQNA--YQLRVPLIADAGWGKNW 916


>gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
 gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA]
          Length = 971

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 96/695 (13%), Positives = 200/695 (28%), Gaps = 148/695 (21%)

Query: 2   ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQV 56
             +  +D ET     +T            ++  +F + ++         D      +   
Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE 114
            + A E      V  N  ++  VL      ++       T+V            +  + E
Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVR-GPLFDTMVAHYVLQPELRHNMDYLAE 505

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  +    +ELI                K     +     +Y   D  VT ++   
Sbjct: 506 IYLH--YQTIHIEELIG---------PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNI 554

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           LE               E  L  +   I   G  VD       ++       ++++E+  
Sbjct: 555 LEQELKTNDAEKLFYEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQ 614

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           L      +    +++   LF +  +      T+T    T + VL S +       ++  +
Sbjct: 615 LAGTD-FNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEH 673

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    +     ++ L   +N +     T      + TGR S      QN+P  +   +E 
Sbjct: 674 R-GLKKLLGTYIDALPLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKE- 731

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  +G +   AD + IE R++A ++G+   +
Sbjct: 732 ------------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMI 767

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G+D++  T A+ + ++  +VT++QR+  K     + Y               +N+
Sbjct: 768 EAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNV 822

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +        +   G   +R       ++S V  
Sbjct: 823 DRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGR--KRYLPDINSRNSVVRG 880

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                                          
Sbjct: 881 Y---AERNAINAPIQGSAADII-------------------------------------- 899

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 +      Y    +ENI                      ++L VHDE+       
Sbjct: 900 ------KAAMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPE 934

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +    M +   +   +PL+A+      +
Sbjct: 935 EKEKVQKIVIEEMENA--YHMQVPLRADCGWGSNW 967


>gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1]
          Length = 915

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 104/695 (14%), Positives = 190/695 (27%), Gaps = 146/695 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET              A+   ++  +F  + H        HD            + 
Sbjct: 337 AFDTETTGLD----------AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPAQLDREAVL 386

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK  LE+     V  N+ ++  +L      +++    +  T++ +      +      
Sbjct: 387 LALKPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAY-DTMLESYVLNSTAT----- 440

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     + + K L       E       +    ++      G Y   D  +T  +  
Sbjct: 441 ---RHDMDSLAQ-KYLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHD 496

Query: 174 RLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQEL 222
            L+   ++   +  +   I              G  VD  L    +  + V+  +L+   
Sbjct: 497 ALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRA 556

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L T L+ + G+ +   T     +T + VL           +V  
Sbjct: 557 YELAG-ETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGYPLPEVLM 615

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                S+      + L   +N       T      + TGR S      QN+P  +     
Sbjct: 616 QYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRR 675

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G KL+ AD + IE R++A +A ++  
Sbjct: 676 -------------------------IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF    D++  T A  F VA   VT DQR   K +   L Y   A           + 
Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSA-----FGLAKQIG 765

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           ++        +     +     +    +    E    +   G            K+  + 
Sbjct: 766 VDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGR--RLYLPDINAKNPALR 823

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +      +        G A    KR  V +     +              V   V +   
Sbjct: 824 K---GAERTAINAPMQGTAADIIKRAMVKVDNWLSESGLDA--------RVILQVHDELV 872

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                             + E++VQ                        V DE       
Sbjct: 873 LE----------------VREDLVQ-----------------------QVKDE------- 886

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   +   M+        +PL  E      +
Sbjct: 887 --------IRQHMSQAAQ--LDVPLLVEAGVGANW 911


>gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
 gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731]
          Length = 971

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 146/473 (30%), Positives = 223/473 (47%), Gaps = 39/473 (8%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL +D ET S ++L KCG+ KYAE     ++LF +  D   V++ D      +P+ + 
Sbjct: 1   MKTLSLDLETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKAC---FNLDIP-----------------IHRWICTLV 98
           +AL +  VT  A N+ FER  L          +                     W C++V
Sbjct: 61  DALTDDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSPAGWKCSMV 120

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAW 154
            +   GLP +L+ VG  L L +QKM+EG+ELI  F   CK         RN P H  + W
Sbjct: 121 WSAYMGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCVPCKETRTNGGRTRNLPQHALDKW 180

Query: 155 RLFGEYCKGDVTVTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             F  Y K DV V   I +R    P+  +  E ++LDQ INDRG  +D+ LA     +  
Sbjct: 181 NQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYHLDQEINDRGIAIDLELAKQAVAMDA 240

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             R  L   L+  T   + +   + ++  WL  + GL  + L +   + +L + ++    
Sbjct: 241 KSRESLMAALKEKTG--LENPNSVLQMLGWL-EDHGLKTDSLGKKQVKELLKTAQEP--- 294

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V   R + ++S+V K   +  A+  DGR RG  QF GA+RTGR +G     QNLP+ 
Sbjct: 295 LRSVLQLRQKLAKSSVKKYQAMENAVCEDGRARGMFQFYGANRTGRVAGRHIQLQNLPQN 354

Query: 333 SRSHEELDQIIT---HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
                   + +    +             ++S  +R+  +   G K VV+D + IEARV+
Sbjct: 355 HLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARVI 414

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALG 440
           +WMAGE+WK  AF  G+D+Y +T ++ F V   +     + R  GK+ ELA  
Sbjct: 415 SWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAELACI 467



 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 19/204 (9%)

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +   +       A++          + ++WR  +  + + W ++  A +  I+    +  
Sbjct: 777 YGGSVGALKAMGALDMGIPEEELGSLVQSWRSANPHIVDFWWQVDGAVKTAIKQRIPV-- 834

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNT-------TTRQLTREY 591
                V  +        L + LPSGR L Y    +G N+    +        T++  R  
Sbjct: 835 ----WVNNIRFVCQSGMLFIELPSGRQLSYVKPRIGENKFGGESVTYEGIGATKKWERLE 890

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
           +YG K  ENIVQ  +RDIL   M         IV  VHDE++ E       +   +   M
Sbjct: 891 SYGPKFVENIVQGTARDILCYAMQTL--RCCAIVGHVHDELIIECSKE--VSVDAICEQM 946

Query: 652 TSNPSWAKGLPLKAEGYESKRYRK 675
           +  P WA+GL L+A+GYE   Y+K
Sbjct: 947 SRTPPWAEGLVLRADGYECAFYQK 970


>gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
 gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1]
          Length = 924

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 95/701 (13%), Positives = 173/701 (24%), Gaps = 157/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------------- 50
            +D ET     LT            ++  +              H               
Sbjct: 345 AVDTETDGLDPLT----------APLVGISLAPQCGRACYIPLGHQVDLMDSLGTPQMPV 394

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--- 107
               ++L+    +  V  V  N+ F+  VL       +       T++++ +        
Sbjct: 395 GTALEILEPLFADPSVLKVFQNAKFDLLVLTQAG--SVQPAPIDDTMLISYAQSAGQHGQ 452

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            +  +          +      I                    +        Y   D  V
Sbjct: 453 GMDELSR--------LTLDHSPIPYD----EVTGTGRNRVVFSQVDIARATPYAAEDADV 500

Query: 168 TREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           T  +++ L P              E+ L  +   +   G  VD      ++         
Sbjct: 501 TLRLWQVLRPRLRTSRALALYEEMERPLIPILADMERAGIAVDADDLRAMSIEFAQRMGV 560

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273
           ++ E+  L      +    ++L   LF E GL     T+     T   VL          
Sbjct: 561 IEAEIHKLAG-REFNVGSPKQLGEILFDEMGLPGGKRTKAGAWGTDSSVLQDLADQGHDL 619

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
                   + ++      + L+  +N       T   +  + TGR S      QN+P  +
Sbjct: 620 PARILAWRQLAKLKSTYADALLNQINPATGRVHTSFQMAVTTTGRLSSNDPNLQNIPIRT 679

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A+ G  LV AD + IE R+LA +A
Sbjct: 680 EEG-------------------------GRIRRAFVAAPGHLLVSADYSQIELRLLADVA 714

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 +AF  G+D++  T +  F +    +    R   K +   + Y   A        
Sbjct: 715 NIPALREAFALGQDIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISA-----FGL 769

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L +         ++    +    ++   ++             G  C     A +  
Sbjct: 770 GRQLGIPPGEARGYIDAYFARYPGIRDYMERVKAEARAKGYVTTPFGRRCWVPGIADKSA 829

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
             R     N   +        G A    KR  V +     D          GR L     
Sbjct: 830 VRR-----NYAERQAINAPLQGGAADIIKRAMVRIPAALSDAG------LDGRML----- 873

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                                    +                +V
Sbjct: 874 -----------------------------------------LQVHDE-----------LV 881

Query: 634 CETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    + L   +M S  +    +PL  E      +
Sbjct: 882 FEVRKDDADRLAALVRQVMESAAT--LSVPLVVETGTGTNW 920


>gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
 gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c]
          Length = 928

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 199/702 (28%), Gaps = 162/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  ++         HD            + 
Sbjct: 352 AFDTETTSLNYM----------QAELVGMSFSIEEGDAAYLPLAHDYVDAPQQLDRSAVL 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
            + K  LE+ +   V  +  +++ VL    ++++    +  T++ +           + +
Sbjct: 402 ALFKPLLEDKNKAKVGQHLKYDKNVLANY-DINLQGIAY-DTMLESYVLNSVATRHDMDS 459

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L       E       +    ++       +Y   D  +T  +
Sbjct: 460 LAQYY------------LGLSTVHFEDIAGKGAKQLTFNQIPLDQAAQYAAEDADITLRL 507

Query: 172 FKRLEPLSSKEQELWYLD-----------QTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              +     +  EL  +              +   G  +D       +Q +     +L++
Sbjct: 508 HNHIWQKLHQTPELASVLTEIEVPLATVLAKMEQFGVLIDSQKLSQQSQDLATRIMQLER 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           E+  L      +    ++L+  LF +  L +   T     +T + VL       P   ++
Sbjct: 568 EVHELAG-EEFNLGSTKQLQEILFNKLSLPVLKKTPKGAPSTSEEVLQELALTYPLP-KL 625

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                  S+      + L + +N       T      + TGR S      QN+P  +   
Sbjct: 626 LMEFRVLSKLKNTYTDKLPKMINPRSGRVHTSYHQAITATGRLSSTEPNLQNIPIRTEQG 685

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      VR   IA  G K+V AD + IE R++A ++ ++
Sbjct: 686 RR-------------------------VRQAFIARPGYKIVAADYSQIELRIMAHLSQDE 720

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF  G+D++  T A  FNV+  +VT +QR   K +   L Y   A        +  
Sbjct: 721 GLLKAFSQGKDIHTATAAEVFNVSLTEVTTEQRRNAKAINFGLIYGMSA-----FGLSKQ 775

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           LN++        +   E +     +    +    E+       G          R     
Sbjct: 776 LNVSRHDAQHYMDLYFERYPGVLKYMEDSRIVAKENGYVSTVFGR---------RLYLPD 826

Query: 517 VSE----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++           +A       G A    K+  + +             LPS        
Sbjct: 827 INASNGLRRKGAERAAINAPMQGTAADIIKKAMLKVDAWID-------TLPS-------- 871

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                                              D     M                 +
Sbjct: 872 -----------------------------------DQTRMIM-QVHDE-----------L 884

Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + E  + +  N    +  LM    S    +PL  E    + +
Sbjct: 885 IFEIKEQNVENDKNTIVDLMEKAVS--LDVPLIVEAGVGENW 924


>gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061]
 gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal);
           3'->5' polymerase; 3'->5' exonuclease (C-terminal)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 930

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 102/703 (14%), Positives = 194/703 (27%), Gaps = 161/703 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP----VELWDCVHD---------- 50
             D ET     LT            ++  +F                 HD          
Sbjct: 351 SFDTETDGLDTLT----------ANLVGMSFAIAAGESEVEAAYLPLAHDYLDAPQQLDL 400

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PS 107
             +   LK  LE+ ++  +  N  F+R VL       +       T++ +          
Sbjct: 401 HEVLTALKPLLEDANLPKIGQNLKFDRGVLARYD--VVLEGIVFDTMLESYVLNSVAGRH 458

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            + ++ E              L  +    E       +    ++       +Y   D  V
Sbjct: 459 DMDSLAERH------------LSYKTTTFEDIAGKGKKQLTFNQIPLEEAAKYAAEDADV 506

Query: 168 TREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           T  + + + P               E  L  +   +   G  +D       ++ + V   
Sbjct: 507 TLRLHQAMYPQLASAEVLKKVFQKIEMPLVPVLSRMERTGVLIDARTLAEHSREITVRLD 566

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQ 272
           +L++   +L      +    ++L+  LF +  L +   T     +T + VL    +    
Sbjct: 567 ELEKSAYAL-ADEEFNLASPKQLQVILFEKMKLPVLKKTPNGAPSTNEEVLEELAENHEL 625

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +  +R   ++      + L + +N       T      + TGR S      QN+P  
Sbjct: 626 PRVILEHR-GLAKLKSTYTDKLPQMVNPLTNRVHTSYHQAVTATGRLSSRDPNLQNIPVR 684

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R   IA  G +++ AD + IE R++A +
Sbjct: 685 NEEGRR-------------------------IRQAFIAPTGYRIMAADYSQIELRIMAHL 719

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T A  F V    VT +QR   K +   L Y   A       
Sbjct: 720 SQDKGLLAAFAQGKDIHRATAAEVFGVPLEHVTGEQRRSAKAINFGLIYGMSA-----FG 774

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            +  L +         +   E +    N+    ++   EH   +   G      +   R 
Sbjct: 775 LSRQLGIPRGEAQRYMDLYFERYPGVLNYMERTRQQAAEHGFVETLEGRRLYLPEIKSRN 834

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
              R         +        G A    K   + +              P+ R      
Sbjct: 835 AMRR-----KASEREAINAPMQGTAADIIKLAMIAVDDWIVS------EKPNVR------ 877

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDE 631
                                                    M+         +V  VH  
Sbjct: 878 -----------------------------------------MIMQVHDE---LVFEVH-- 891

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 +++   A   +  LM  +      +PLK +      +
Sbjct: 892 ------ESELAMAEQKIRALMEQSM--LLDVPLKVDVGIGDNW 926


>gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
 gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492]
          Length = 958

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 95/697 (13%), Positives = 197/697 (28%), Gaps = 155/697 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQ---VLK 58
            L ID ET     +          D  ++  +F   ++             + +     +
Sbjct: 387 ILSIDTETTGTEPM----------DAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFR 436

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN     V  N  ++  +L+    + +   +   T++            +  + E  
Sbjct: 437 PLFENEKSMKVGQNIKYDMIILQNY-GVQVK-GKLFDTMLAHYVLQPELRHNMDYLAEIY 494

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +     ELI                K            Y   D  VT ++   LE
Sbjct: 495 LH--YQTIHIDELIG---------ARGKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLE 543

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       +Q   V   ++++E+  + 
Sbjct: 544 KELKEQGAEHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA 603

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL S +       ++   R 
Sbjct: 604 G-ETFNISSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYR- 661

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N   GR+  +      + TGR S      QN+P      +E  
Sbjct: 662 GLKKLLSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIPIRDEDGKE-- 718

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I   G +   AD + IE R++A ++ ++  + 
Sbjct: 719 -----------------------IRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMID 755

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ + +    VT D R   K     + Y               + ++
Sbjct: 756 AFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISV-----FGLAERMGVS 810

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +   E +   + +     +   E+   +                        
Sbjct: 811 RQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIF--------------------- 849

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                ++R +P +  +           +G    Y +     + +
Sbjct: 850 --------------------HRKRFLPDINSR-----------NGVVRGYAERNAINAPI 878

Query: 581 NTTTRQLTREY---TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
             +   + +      Y      N         L   M+          L VHDE+    P
Sbjct: 879 QGSAADIIKVAMAHIYQRFQAYN---------LKAKMI----------LQVHDELNFSVP 919

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + ++     +    M     +   +PLKA+      +
Sbjct: 920 EAEKELVQKIVIEEMEQA--YRMYVPLKADCGWGNNW 954


>gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1]
 gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1]
          Length = 915

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 107/695 (15%), Positives = 193/695 (27%), Gaps = 146/695 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET              A+   ++  +F    H        HD            + 
Sbjct: 337 AFDTETTGLD----------AQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAVL 386

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVG 113
             LK  LE+     V  N+ ++  +L      +++    +  T++ +      +      
Sbjct: 387 LALKPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAY-DTMLESYVLNSTAT----- 440

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              +     + + K L       E       +    ++      G Y   D  +T  + +
Sbjct: 441 ---RHDMDSLAQ-KYLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHQ 496

Query: 174 RLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQEL 222
            L+   ++   +  +   I              G  VD AL H  +  + V+  +L+Q  
Sbjct: 497 ALQARLAQTPSVQPVLMDIEMPLVPVLAKIERQGALVDAALLHVQSGELGVKMGELEQRA 556

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFN 278
             L      +    ++L   L+ + G+ +   T     +T + VL     L     +V  
Sbjct: 557 YELAG-EEFNLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDELALLGYPLPEVLM 615

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                S+      + L   +N       T      + TGR S      QN+P  +     
Sbjct: 616 QYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRR 675

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G KL+ AD + IE R++A +A ++  
Sbjct: 676 -------------------------IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L AF    D++  T A  F VA   VT DQR   K +   L Y   A           + 
Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALQDVTTDQRRKAKAINFGLIYGMSA-----FGLAKQIG 765

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           ++        +     +     +    +    E    +   G            K+  + 
Sbjct: 766 VDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGR--RLYLPDINAKNPALR 823

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +      +        G A    KR  V +     +              V   V +   
Sbjct: 824 K---GAERTAINAPMQGTAADIIKRAMVNVDNWLSESGLDA--------RVILQVHDELV 872

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                             + E++VQ                        V DE       
Sbjct: 873 LE----------------VREDLVQ-----------------------QVKDE------- 886

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   +   M+        +PL  E      +
Sbjct: 887 --------IRQHMSQAAQ--LDVPLLVEAGIGANW 911


>gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703]
          Length = 612

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 107/697 (15%), Positives = 200/697 (28%), Gaps = 152/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 36  AFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWVL 85

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F++++L     +D+       T++ +           + +
Sbjct: 86  AQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIA-FDTMLESYVLDSVAGRHDMDS 143

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 144 LAERY------------LNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQL 191

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G  +D  +    ++ + +   +L++
Sbjct: 192 HLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILVAHSKELTIRLDELEK 251

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 252 QAHEL-AEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVI 310

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 311 LEYR-GLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEG 369

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA EG +++ AD + IE R++A ++ ++
Sbjct: 370 RR-------------------------IRQAFIAPEGYRIMAADYSQIELRIMAHLSQDK 404

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F ++  +VT +QR   K +   L Y   A           
Sbjct: 405 GLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSA-----FGLARQ 459

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           LN+         +   E +     +    ++   E        G          R    R
Sbjct: 460 LNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRR 519

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +        G A    KR  + +    + +   ++ +              
Sbjct: 520 -----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRV-------------- 560

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                   I+Q                    +V  VH E V E+
Sbjct: 561 ------------------------IMQ-------------VHDE---LVFEVH-ESVLES 579

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +        +  LM  +   A  +PLK +      +
Sbjct: 580 AE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 608


>gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01]
 gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01]
          Length = 937

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 105/695 (15%), Positives = 199/695 (28%), Gaps = 148/695 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  ++         HD            + 
Sbjct: 361 AFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVL 410

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL     +++   +   T++ +              
Sbjct: 411 EQLKPILEDDTQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDS 468

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+                   E       +    ++        Y   D  VT  +  
Sbjct: 469 LALRFLQHS----------CISFEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHN 518

Query: 174 RLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           RL     +++            L  +   I   G  +D  L    +Q + V   +L+Q+ 
Sbjct: 519 RLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKA 578

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             +      +    ++L+  LF + GL +   T +    T + VL       P    +  
Sbjct: 579 YEI-AEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPLPKLIIE 637

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++      + L + +N++     T      + TGR S      QN+P  +     
Sbjct: 638 YR-GLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRR 696

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G K++  D + IE R++A ++G++  
Sbjct: 697 -------------------------IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKAL 731

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF+ G+D++  T A    VA  QVT +QR   K +   L Y   A           L 
Sbjct: 732 LEAFQQGKDIHAATAAEIIGVAIDQVTTEQRRRAKAVNFGLIYGMSA-----FGLAKQLG 786

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +         ++  E +     +    +    E    +   G      +   R    R  
Sbjct: 787 IPRGEAQHYMDTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRR-- 844

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +A       G A    K+  + +    + + +  + L          V +   
Sbjct: 845 ---KAAERAAINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM-------QVHDELV 894

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
           +    +              E+ VQ                                   
Sbjct: 895 FEVQESALAE---------IESKVQ----------------------------------- 910

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                      LM S       +PL AE      +
Sbjct: 911 ----------QLMESAAD--LEVPLVAEAGHGDNW 933


>gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
 gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359]
          Length = 893

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 115/697 (16%), Positives = 215/697 (30%), Gaps = 153/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MPQVL 57
            +D ET S              +  ++  +  F           H          +   L
Sbjct: 321 ALDLETSSLDPF----------NCEIVGISVSFKPKTAYYIPLHHRNAQNLDETLVLSKL 370

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           KE LE+    IV  N  ++  VL     +  P++    T++ A           L+ +  
Sbjct: 371 KEILEDPSSKIVGQNLKYDYKVLM-VKGIS-PVYPHFDTMIAAYLLEPNEKKFNLEDLS- 427

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            LK    KM   +EL++                            Y   D  +T  ++K 
Sbjct: 428 -LKFLGYKMTSYQELMSFSSP--------LFGFSFADVPVDKAANYSCEDADITYRLYKI 478

Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L                E  L  +   +   G  VD      L++    +  +L +++  
Sbjct: 479 LSMKLHEAELENVFYRIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEKIYQ 538

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFNN 279
           +      +    +++   LF + G+     T  T +      VL            +   
Sbjct: 539 IAG-EPFNINSPKQVSKILFEKLGIKPRGKTTKTGEYSTRIEVLEEIANEHEIVPLILEY 597

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R +  +     ++TL + +N   GR+  +    G + TGR S      QNLP  S   +E
Sbjct: 598 R-KIQKLKSTYIDTLPKLVNPKTGRIHASFHQTG-TATGRLSSSDPNLQNLPTKSEEGKE 655

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397
                                    +R  ++       +V AD + IE R+LA ++G++ 
Sbjct: 656 -------------------------IRKAIVPQDPDWWIVSADYSQIELRILAHLSGDEN 690

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            +KAFE G D++  T +R +NV P +V ++ R +GK++  ++ Y            +  L
Sbjct: 691 LVKAFEEGIDVHTLTASRIYNVKPEEVNEEMRRVGKMVNFSIIYGVTP-----YGLSVRL 745

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +          S    +    ++ + +     E        G   +  +   R K+   
Sbjct: 746 GIPVKEAEKMIISYFTLYPKVRSYIQQVVAEAKEKGYVRTLFGRKRDIPQLMARDKN--- 802

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
               +E  +    T   G A                              L   D+    
Sbjct: 803 --TQSEGERIAINTPIQGTAADII-------------------------KLAMIDIDEEL 835

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
              N                            +   M+          + VHDE+V E P
Sbjct: 836 RKRN----------------------------MKSRMI----------IQVHDELVFEVP 857

Query: 638 DTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           D ++     ++ + MT+       +PL+ +    K +
Sbjct: 858 DEEKEELVDLVKNKMTNVVK--LSVPLEVDISIGKSW 892


>gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 906

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 94/710 (13%), Positives = 200/710 (28%), Gaps = 172/710 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T   D ET S   +          +  ++ + F  D +        HD           
Sbjct: 332 KTFVFDLETTSLDYM----------NATIVGWVFLVDKNS-FYVPVGHDYLNAPKQLDFK 380

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +   LK  LE+  +  V  N  ++  +L     +D+       T+V +           
Sbjct: 381 DVLDQLKLILEDVSIGKVGQNLKYDAHILANYQ-IDLQGIS-DDTMVKSYCLNSVATRHN 438

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  + E              L  +    +       +    ++        Y    V VT
Sbjct: 439 IDDLSEYY------------LNHKTIHFDDIAGKGKKQITFNQVDLETAFPYACEYVIVT 486

Query: 169 REIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             +   L+    +              L  +   +   G  +D+    T    +  +   
Sbjct: 487 DLLNHVLDEEIVQYPKLVKLYQNLELPLIKVLLCMERNGIELDMNELSTQQIDIVQQMKD 546

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGL------HLEDLTETTCQRVLSSNKKLTP 271
           +  ++  L    + +    ++++  LF   GL             +T +  L       P
Sbjct: 547 IQAQVFELAG-DIFNLESPKQIQQILFEPEGLGLTPLKKTPKGAPSTNEEALKLL--DHP 603

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               + + R   ++     L  L + ++ +     T      + TGR S      QN+P 
Sbjct: 604 LVDLILSYR-TLTKLNSTYLEALPKQIDLNTHRLHTSYHQAVTVTGRLSSSNPNLQNIPI 662

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            S+                             +R   +A +   ++ AD + IE R++A 
Sbjct: 663 RSKQG-------------------------ARIRGAFVAGKDNVIIAADYSQIELRIMAQ 697

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ ++  L AF   +D++  T +  FN+   +VTK  R   K +   L            
Sbjct: 698 LSQDKNLLDAFNHDKDVHSVTASTMFNMPINEVTKKHRRRSKAINFGLI----------- 746

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++       +                                     ++    + 
Sbjct: 747 ---YGMSAFGLTKQID------------------------------VSIIEAKQYIDTYF 773

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +  V    + + ++ +                              +    GR L   
Sbjct: 774 DNYPGVLHYMDSIKESAK--------------------------VWGYVETVMGRRLYLP 807

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIV 625
            + +    L        R            +Q  S DI+ + M++             ++
Sbjct: 808 QINSKNKILQQH---ALRTAINAP------MQGSSADIIKKSMLDIHAWIGENNPDIRMI 858

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           + VHDE+V E  ++     +  +  LM +   +   +PLK        ++
Sbjct: 859 MQVHDELVFEVSESKADEFAHKIQGLMANV--YLLDIPLKVNVGIGTSWQ 906


>gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
          Length = 449

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 144/455 (31%), Positives = 228/455 (50%), Gaps = 19/455 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L+N ++   A N+ FER  L       +    W C+ V + + GLP +L+ +G  L L
Sbjct: 61  EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + DV V  EI ++
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEITQK 180

Query: 175 --LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + LT     +
Sbjct: 181 LECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTGLA--N 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + G+    L++ +  ++L +    T    QV   R   S+S+V K  
Sbjct: 239 PNSPLQLKDWLQQQ-GIKTNSLSKASVAQLLQT---TTGTVHQVLALRQLLSKSSVKKYQ 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---LPTS 349
            + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    E  + +     +P  
Sbjct: 295 AMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPAL 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                    ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ ++F   ED+Y
Sbjct: 355 AMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDIY 414

Query: 410 VTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQ 442
             + ++ F V   +     + R  GK+ ELALGY 
Sbjct: 415 CASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449


>gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
 gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1]
          Length = 945

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 108/699 (15%), Positives = 210/699 (30%), Gaps = 150/699 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDP-------VMPQVL 57
           D ET +              D  ++     +      V      H              L
Sbjct: 361 DTETTALNP----------RDAALVGLGCCWGAAPDQVAYLPLGHKEGQNLPLEETLAAL 410

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-E 114
           +  LE      V  N+ F+R VL     + +       T++ +          LK +   
Sbjct: 411 RPILEGDRYPKVLQNAKFDRLVL-RFQGIQLR-GVVFDTMLASYVINPEASHNLKDLCQR 468

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L L +Q                       +++     +     +YC  DV  T  + ++
Sbjct: 469 YLPLQAQSYRTL----------------VGKDQTLADLSPATVAQYCGLDVHTTYLLKEK 512

Query: 175 LEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           LE   +                +   +   G  +D      L+Q ++ +   L Q+    
Sbjct: 513 LEADLTPRLRQLLLEVELPLEPILAEMEATGIRIDSDYLRQLSQELEQQLAALQQQAWDA 572

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +    ++L   LF   GL  +    T+   +T    L   +   P    + ++R
Sbjct: 573 VGQP-FNLASPKQLSELLFGTLGLDTKKTHKTKLGYSTDAATLEKLRGDHPVIDLILSHR 631

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
              ++     ++ L   +  D GR+         + TGR S      QN+P  +      
Sbjct: 632 -TLAKLKSTYVDVLPTLVRPDTGRVHTEFNQAV-TATGRLSSSSPNLQNIPIRTE----- 684

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                S  +R   I   G  LV AD + IE R+LA ++ E   L
Sbjct: 685 --------------------FSRQIRRAFIPEAGWLLVAADYSQIELRILAHLSQEPALL 724

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            A++ G D++  T      +    ++  +R +GK++   + Y  G + F + A      +
Sbjct: 725 AAYQEGADVHRLTAQFL--LEKTDISSSERRLGKMINFGVIYGMGPQRFAREA-----GV 777

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +     V        +    ++ R M+         +  +G       + +         
Sbjct: 778 SVAEAKVFIQRFYNRYPRVFDYLRQMERLALSQGYVETILGR------RRYFA------- 824

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                         +  ++  +L          V  DV  ++  
Sbjct: 825 ------------------------------FESRELQSLRGKPLD----VLADVDPSKLK 850

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDEIVCE 635
           ++   R L R            +Q  S DI+   M+            ++L VHDE+V E
Sbjct: 851 MSNYERGLLRAAANAP------IQGSSADIIKCAMVKLAPLLPPEKARLLLQVHDELVLE 904

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  +    +  +M++       +PL  + Y +  +
Sbjct: 905 MTPEAWEHLQTTIPEVMSTAVP--LSVPLAVDIYAAANW 941


>gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 929

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 104/697 (14%), Positives = 199/697 (28%), Gaps = 153/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET     LT            +I  +F             HD            + 
Sbjct: 354 AFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
            + K  LE+  +  +  N  F++ V++   ++D+       T++ +           + +
Sbjct: 404 ALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIA-FDTMLESYVLDSVAGRHDMDS 461

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT  +
Sbjct: 462 LAERY------------LSHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHL 509

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            ++L                    L  +   I   G  +D A+    ++ + +   +L+ 
Sbjct: 510 HQKLWGKLQPHTDLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKRLTIRLAELET 569

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L           +T + VL+      P    +
Sbjct: 570 QAYELAG-EEFNLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALGYPLPKLI 628

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N   +   T      + TGR S      QN+P  +   
Sbjct: 629 LEYR-GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 687

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA +G  +V AD + IE R++A ++G++
Sbjct: 688 RR-------------------------IRQAFIAPQGYSIVAADYSQIELRIMAHLSGDK 722

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G D++  T +  F  A  +VT +QR   K +   L Y   A        +  
Sbjct: 723 GLLNAFANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSA-----FGLSRQ 777

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           LN+         N   E +   +++    ++   EH       G          R   +R
Sbjct: 778 LNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMAR 837

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +A       G A    K+  + +    +                       
Sbjct: 838 -----KGAERAAINAPMQGTAADIIKKAMIAIDDWLRKD--------------------- 871

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                              K+                M         +V  +HD ++   
Sbjct: 872 -----------------TPKV-------------KMIM-QVHDE---LVFEIHDSVI--- 894

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               E + S +  LM         +PL+ +      +
Sbjct: 895 ----EESISKIKVLMEGCMQ--LNVPLQVDIGTGMNW 925


>gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120]
 gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120]
          Length = 977

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 104/704 (14%), Positives = 199/704 (28%), Gaps = 156/704 (22%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVH-------DPVMPQVL 57
           D ET +              D  ++     +             H         ++   L
Sbjct: 391 DTETSALEP----------RDAALVGIGCCWGTETDASAYIPLAHTKGENLNQDIVLAAL 440

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-E 114
           +  LE+ D      N+ F+R V      +++        ++ +          L  +   
Sbjct: 441 RPILESADYPKTFQNAKFDRLVFL-VQGINL-TGVVFDPMLASYVLNPDTSHNLTDLTQR 498

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L L+ Q   +                   + K            YC   V  T ++  +
Sbjct: 499 YLGLTIQNYVDL----------------VPKGKTIADINISAVANYCCLQVYATFQLVAK 542

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L                 EQ L  +  T+   G  ++ A  H L+Q ++++  KL ++  
Sbjct: 543 LREELAKTPNLDKLLREVEQPLESVLATVEYTGVRINSAYLHELSQQLEIDLAKLQEQAT 602

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTP--QAIQV 276
            L      +    ++L   LF + GL  +         +T    L   +++        +
Sbjct: 603 ELAG-EKFNLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEKLQEVDDTGFVNAI 661

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   S+     ++ L   +  D +   T     A+ TGR S      QN+P  +   
Sbjct: 662 IEYR-TLSKLKSTYVDALPALVRPDTQRVHTDFNQTATSTGRLSSSNPNLQNIPIRTA-- 718

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                   S  +R   +   G  +  AD + IE R+LA ++ E 
Sbjct: 719 -----------------------FSRQIRKAFLPESGWLMAAADYSQIELRILAHLSQEP 755

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++A++  ED++  T    F      V  D+R I K +   + Y  G+  F +      
Sbjct: 756 LLVQAYQQNEDIHTVTAKLVF--EKEDVNSDERRIAKTINFGVIYGMGSLKFSR-----S 808

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
             ++            E +     +   +++        +                    
Sbjct: 809 TGIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETI------------------ 850

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-N 575
                                    +RR          K                D+  +
Sbjct: 851 -----------------------LGRRRYFDFTNNSLRKLKGSKP---------EDIDLS 878

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDE 631
               L      L R            +Q  S DI+   M+       K    ++L VHDE
Sbjct: 879 KLKNLGPYDAGLLRSAANAP------IQGSSADIIKIAMVQIHEVLKKYQARLLLQVHDE 932

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +V E P  +       +  +M +       +PL  +    + + 
Sbjct: 933 LVFEVPPQEWAELQPQIKSVMENAVK--LSVPLVVDVRAGENWM 974


>gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8]
 gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8]
          Length = 949

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 110/698 (15%), Positives = 202/698 (28%), Gaps = 162/698 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDPVMPQVLKE 59
             D E  S   +T            ++  +F  +                   +  VL  
Sbjct: 381 AFDAEATSRDPMT----------ADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGP 430

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117
            L   D   + HN  ++  +LK    +++       T+V            L  V  +  
Sbjct: 431 VLAR-DTEKLGHNLKYDLLLLKQH-GVEV-GGTLFDTMVAHYLVAPEENHNLDDVARS-- 485

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           + + KM    +LI                             Y   D  ++  +   LE 
Sbjct: 486 VLNYKMVPIADLI----------GDETDRDSMREVDVETAAPYACEDADISYRLADELEA 535

Query: 178 LSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                            L ++  T+   G  +D  +   +   ++   + +++E+  L  
Sbjct: 536 QLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAG 595

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               +    ++L   LF +  L +   T     +T + VL            V  +    
Sbjct: 596 -EEFNINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVL-DWRST 653

Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            +     L++L E ++ + GRL  +      + TGR S      QN+P  +         
Sbjct: 654 YKLKSTYLDSLGELVHPETGRLHTSFNQTR-TATGRLSSSDPNLQNIPIRTEMGR----- 707

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R   +  +G  L+ AD A IE R+LA M+G+      F
Sbjct: 708 --------------------QIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRATF 747

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G D++    AR + + P  VT +QR+  K +                    G++    
Sbjct: 748 QEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNY--------------GIPYGISPWGL 793

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A                                        + + K +R+ +  VS+L N
Sbjct: 794 AQR------------------------------MRMPVDEAQDIIKQYRKSYPGVSQLLN 823

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           EL    E+  + G A                           GR     D+ ++ S    
Sbjct: 824 EL---VEKAQDKGYAETLL-----------------------GRRRYLPDIDSSNS---N 854

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCET 636
                 R            +Q    D++   M               ++L VHDE+V E 
Sbjct: 855 ARSAAERVA------VNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEV 908

Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           P  +   A  M+   M         +P+  +      +
Sbjct: 909 PPDELDAAQTMIDDEMRDALPL-DDVPVTVDMDTGDNW 945


>gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Enterococcus sp. 7L76]
          Length = 545

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 139/438 (31%), Positives = 216/438 (49%), Gaps = 18/438 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L +D ET S +DL+KCG+ KY+E  D  ++LFA+  D  PVE+ D   D  +P  + 
Sbjct: 1   MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +L +  V   A N+ FER  L     LD  +    W CT+V   + GLP +L  VG  L
Sbjct: 61  TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120

Query: 117 KLSSQKMEEGKELIARFCK---GETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIF 172
            L+ QK+ EGK+LI  FC             RN P+H    W  F  Y   DV V   I 
Sbjct: 121 GLNKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIAIQ 180

Query: 173 KRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +L   P+     + ++LDQ INDRG  +D        Q+ ++ +  L+Q+L+ LT   +
Sbjct: 181 GKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG--L 238

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   + +++ WL    GL  E L +     +L     +     QV   R + ++S+V K
Sbjct: 239 ENPNSVLQMRGWLLDH-GLETESLGKKAVDELLEQ--PIDENLKQVLVLRQQLAKSSVKK 295

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL---P 347
              +     SD R RG  QF GA+RTGR++G     QNLP+   S     + +       
Sbjct: 296 YQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQNHMSDLSEARSLVKQSNFE 355

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                  +   ++S+ +R+  +  EG K +V+D + IEARV+AW++GE+W+ + F+ G D
Sbjct: 356 MLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGGD 415

Query: 408 LYVTTYARSFNVAPAQVT 425
           +Y  + ++ F V   +  
Sbjct: 416 IYCASASQMFGVPVEKHG 433


>gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
 gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303]
          Length = 986

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 112/716 (15%), Positives = 214/716 (29%), Gaps = 161/716 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD--------- 50
             + +D ET +                 ++     + +    +      H          
Sbjct: 386 KPVALDTETTALNPFC----------AELVGLGVCWGEGLQDLAYIPIGHHPPAELLEAE 435

Query: 51  -------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                    + + +   L + D      N+ ++R +L     L +     + TL+     
Sbjct: 436 AACQLPLEAVLKAIAPWLASNDHPKALQNAKYDRLILLRH-GLALE-GVVMDTLLADY-- 491

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                L+       L      E K              L  + +     A      YC  
Sbjct: 492 -----LRDAAAKHGLEVMAEREFK------ITPTGFSELVGKGQTFADVAIPTASLYCGM 540

Query: 164 DVTVTRE-----------IFKRLEPLSSK-EQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           DV +TR            +  +L PL  + EQ L  +   +   G  +D+    TL+  +
Sbjct: 541 DVHLTRRLALRLRAQLEDMGAKLLPLLEQVEQPLEPVLALMEATGIRIDLPYLQTLSVEL 600

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSSN 266
                +L+++          +    ++L   LF   GL+ +         +T   VL   
Sbjct: 601 GETLERLEEQAREAAGVD-FNLASPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKL 659

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFP 325
           +   P    V  +R+  S+     ++ L + + +  GR+         + TGR S     
Sbjct: 660 EADHPVVPLVLEHRV-LSKLRSTYVDALPQLVESETGRVHTDFNQAV-TATGRLSSSNPN 717

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +                           S  +R   +  E  +L+ AD + IE
Sbjct: 718 LQNIPIRTE-------------------------FSRRIRKAFLPQENWQLLSADYSQIE 752

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+L  ++GE+   +AF  G+D++  T      +   +V+ D+R +GK +   + Y  GA
Sbjct: 753 LRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSSDERRLGKTINFGVIYGMGA 810

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
              Q+ A +TG++          +   + +     F    +         +  +G     
Sbjct: 811 ---QRFARSTGVS--QAEAKDFLSRYKQRYAKVFTFLELQERLALSEGYVETLLG----- 860

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                                                 R  P  + +     L+   P  
Sbjct: 861 --------------------------------------RRRPFHFDRNGLGRLLGKDPM- 881

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
                 D+  + +       Q  R            +Q  S DI+   M+   +      
Sbjct: 882 ------DIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQEKLTAAD 929

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
               ++L VHDE+V E   T   +    +   M         +PL  E      + 
Sbjct: 930 LPARLLLQVHDELVLEVDPTALEDVQQLVVQTMEKAVE--LSVPLVVETGIGDNWM 983


>gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo]
 gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo]
          Length = 889

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 100/700 (14%), Positives = 202/700 (28%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S        +  Y     +I  +  F +             +        
Sbjct: 322 KYISIDTETSS--------LDIYT--ARLIGISISFKEFEGYYIPIEAKGKIYIEKHYII 371

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 372 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFL 428

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 429 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 473

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                              E     +   + + G  +D        + +  E   ++ E+
Sbjct: 474 NIFTKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEI 533

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S          +  +R
Sbjct: 534 IKSIGI-NFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENIIKHR 592

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 593 Q-IAKLKSTYTDNLIELINHKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 649

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 650 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIK 686

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T D R I K +                     ++  
Sbjct: 687 AFENNKDIHTETASKLFKIEEKEITPDLRRIAKSIN--------------FGIIYRMSDF 732

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 733 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 762

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                     T                                  R    +++ +N    
Sbjct: 763 ITNQINFVRNT--------------------------GYSETILKRRRYIKEINSNNYLE 796

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 797 RSA---AERIAI------NSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDEMLI 847

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  ++     +  +M    ++   LPL+A     K + 
Sbjct: 848 ESPIKEKNEVEKILKIMMET-AYTLNLPLRANIETGKSWG 886


>gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 931

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 96/701 (13%), Positives = 191/701 (27%), Gaps = 155/701 (22%)

Query: 2   ATLF------IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----P 51
            T+        D ET                   ++  +F F +          D     
Sbjct: 353 KTIASQQSCCFDTETTGLDPNVS----------ELVGMSFAFREGEAYYVPVPADFEKAK 402

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            + +  +   EN +   +  N  ++  VLK    + +   R   T++            +
Sbjct: 403 AIVEQFRPFFENGETEKIGQNIKYDIIVLKKY-GIHVR-GRLFDTMIAHYLINPELRHNM 460

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E       K     ELI                            +Y   D  +T 
Sbjct: 461 DYMAETY--LKYKTIHIDELIG---------SRGKNQLNMRSLRPDQIKDYACEDADITL 509

Query: 170 EIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           ++   LE    K+            L Y+   +   G  +D       ++ + +E   ++
Sbjct: 510 KLKAILEKAIEKQDLGKLLYDIELPLIYVLADMEYTGVRLDKTALAEYSKTLTLELQGIE 569

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAI 274
            E+         +    +++   LF +  +      T+T    T +  L S K       
Sbjct: 570 SEIYK-AAEQEFNINSAKQVGEVLFDKLKIVEKPKKTKTGQYVTSEETLESMKDAHSIVG 628

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           ++   R    +     ++ L   ++  D +L  +      + TGR S      QN+P   
Sbjct: 629 KILEYR-GLKKLLSTYIDALPLLVSPLDDKLHTSYNQ-TVTATGRLSSSNPNLQNIPIRD 686

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
              +E                         +R   IA E      AD + IE R++A ++
Sbjct: 687 AQGKE-------------------------IRKAFIADEACIFFSADYSQIELRIMAHLS 721

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF +GED++  T A+ + +  ++VT D R   K     + Y            
Sbjct: 722 QDPTMIDAFNSGEDIHAATAAKIYKIPISEVTGDMRRKAKTANFGIIYGISV-----FGL 776

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L++         +     +   + +          +   +   G   +R       +
Sbjct: 777 AERLSIPRGEAKELIDGYFATYPKVKEYMDKSISVARTNNYVETVFGR--KRYLPDINSR 834

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++ V        +        G A    K                               
Sbjct: 835 NTTVRGY---AERNAINAPIQGSAADIIK------------------------------- 860

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                 +N    +  RE                                 ++L VHDE+ 
Sbjct: 861 ----VAMNRIFDRFERENI----------------------------KSKMILQVHDELN 888

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 +      +    M +       +PLKA+  + K +
Sbjct: 889 FNVESNELDKVQKIVIEEMENAYKLV--VPLKADCGKGKNW 927


>gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
 gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a]
          Length = 908

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                        + +   E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                                        R    +++ +N    
Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905


>gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
 gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001]
          Length = 990

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 110/722 (15%), Positives = 203/722 (28%), Gaps = 173/722 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDPVMPQVLK--- 58
           + +D ET +                 ++     + +    +      H P +   L    
Sbjct: 388 VALDTETTALNPF----------QAELVGLGVAWGEGLTELAYIPIGHQPPVADDLLSET 437

Query: 59  -----------------EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLA 100
                              L + +      N+ ++R +L       +P+   +  TL+  
Sbjct: 438 PTPPRQLPLDEVLTALAPWLASAEHPKALQNAKYDRLILLRH---GLPLGGVVMDTLLAD 494

Query: 101 RSNGLP--SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                     L+ + +  L  +     E                   +            
Sbjct: 495 YLRDANAKHGLEVLAQRNLGFTPTSYGEL----------------VPKGASFAAVPVEAA 538

Query: 158 GEYCKGDVTVTREIFKRLEPLSSK------------EQELWYLDQTINDRGYCVDVALAH 205
             YC  DV VTR +   L     +            E  L  +   +   G  +D A   
Sbjct: 539 ALYCGMDVHVTRRLSPLLRRQLEELGPSLPALLDGVELPLEPVLAQMEATGIRIDTAYLQ 598

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQ 260
            L++ +     +L+ E  +       +    ++L   LF   GL  +         +T  
Sbjct: 599 ELSEELGATLARLEAEARAAAGV-EFNLASPKQLGELLFDTLGLDRKKSRRTKTGWSTDA 657

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRW 319
            VL   +   P    V  +R   S+     ++ L   M  + GR+         + TGR 
Sbjct: 658 NVLEKLEDDHPVVPLVLEHR-TLSKLKSTYVDALPSLMEPETGRVHTDFNQAV-TATGRL 715

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  +                           S  +R   +  EG  L+ A
Sbjct: 716 SSSNPNLQNIPIRTE-------------------------FSRRIRKAFLPQEGWSLISA 750

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+L  + GE+  ++A+  G+D++  T      +    VT D+R +GK +   +
Sbjct: 751 DYSQIELRILTHLCGEEVLVEAYRNGDDVHALTARLL--LDKEAVTPDERRLGKTINFGV 808

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  GA   Q+ A  TG++ +        +   + +     F    +         +  +
Sbjct: 809 IYGMGA---QRFARETGVSQS--QAKDFLSRYKQRYPKVFAFLELQERLALSRGYVETIL 863

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
           G                                           R  P  +        +
Sbjct: 864 G-------------------------------------------RRRPFAFDPSGLGRHL 880

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
              P        ++    +       Q  R            +Q  S DI+   M++  +
Sbjct: 881 GKDPM-------EIDLEVARRGGLEAQQLRAAANAP------IQGSSADIIKLAMVHLQQ 927

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKR 672
           A         ++L VHDE+V E           L    M         +PL  E      
Sbjct: 928 ALSQQALPARLLLQVHDELVLEAAPEALDQVCDLTRQTMERAVQ--LTVPLVVETGVGPN 985

Query: 673 YR 674
           + 
Sbjct: 986 WM 987


>gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
 gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421]
          Length = 942

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 98/704 (13%), Positives = 190/704 (26%), Gaps = 165/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--------------HD 50
             D ET     L          +  +  F+                              
Sbjct: 367 AFDCETTGLNPL----------EAELAGFSLALKAEEAFYIPVKLPPPELQSQAPQPMPL 416

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
                 L    +  ++TI+ HN  F+   ++     +        T++ A          
Sbjct: 417 EKAVSELARLWQQKNLTIIMHNGKFDYQAMRTAGVFEKTPCAIFDTMIAAWLLDPDRT-- 474

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
                   S        + IA        +             +     Y   D  +T +
Sbjct: 475 ---SFSLDSLASSLLKLQTIAYKDVVPKGKI-------FSDVPYEQAVAYAAEDADITLQ 524

Query: 171 IFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            ++ L P   +             L  L   +   G  +        ++ +  E    ++
Sbjct: 525 FYEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAGIFLKKEELAEFSEELGKEIIVHER 584

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           E+  +      +    ++L+  LF E  L     T+   +T   VL           ++ 
Sbjct: 585 EIFDIVGH-EFNIASPKQLQEVLFTELKLPTGKKTKTGYSTDTSVLEVLASEHVIPAKIL 643

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R   ++      + L    + +GR+  +    G + TGR S      QN+P    +  
Sbjct: 644 EYR-ALTKLKSTYTDALPALADKNGRVHTSFIQTG-TATGRLSSRDPNLQNIPIRDEAGR 701

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R    A +GK L+ AD A IE  +LA ++ ++ 
Sbjct: 702 R-------------------------IRKAFQAEKGKNLISADYAQIELVILAHLSQDKN 736

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF+ G D++  T A  F +   +V  D R I K +                    G+
Sbjct: 737 LVQAFQEGTDVHAATAALIFGMPIGEVLPDMRRIAKTINF--------------GVMYGM 782

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    ++                                           + + + +S V
Sbjct: 783 SAFRLSNA------------------------------LRIPRRQAADFIETYFKTYSGV 812

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                EL ++  +                             +    GR      + +  
Sbjct: 813 HIFMEELKESARR--------------------------KGYVETLMGRRRYIYAINSAN 846

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
                      R            +Q  + DI+   M+         K    ++L VHDE
Sbjct: 847 KLE---QAGAERVAINTP------IQGSAADIVKTAMLKVQNALQAHKLQAKLLLQVHDE 897

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++CE P+ +      +L   M S       +PL+      K + 
Sbjct: 898 LICEAPEKETETVKTLLRQEMESVVKLL--VPLRVNIESGKTWG 939


>gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
 gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1]
          Length = 908

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 106/706 (15%), Positives = 193/706 (27%), Gaps = 166/706 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
             +  D ET S   +             ++  +F   +         H            
Sbjct: 331 DLVAFDTETTSLDQMA----------AKLVGMSFAIVEGEAAYLPLAHIYPAAPAQLPLA 380

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN--GLPSA 108
            +   LK  LE+     +  N  ++  VL       + +      TL+ +       P  
Sbjct: 381 EVLAKLKPWLESDAHPKLGQNLKYDAHVLANH---GLRLGGIAHDTLLQSYVLESDRPHD 437

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + ++ +           G + I                    + A     EY   D  +T
Sbjct: 438 MDSLAKRH--------LGIDTIPY----TAVCGKGVGQICFDQVAIERATEYAAEDADIT 485

Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + ++L P               E     +   +   G  +D  L    ++ +      
Sbjct: 486 LRLHRKLWPQLEAAPALAALYRDIEMPAMAVLFDMERTGVLIDAFLLAQQSEELGRRLMT 545

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQA 273
           L++E   L      +    ++L   LF + GL +   T     +T + VL+      P  
Sbjct: 546 LEREAHDLAGQP-FNLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLAQLADDYPLP 604

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +  +R   S+      + L   +N   GR+  +     A  TGR +      QN+P  
Sbjct: 605 KLLLEHR-GLSKLKSTYTDKLPRMVNAKTGRVHTSFSQAVA-VTGRLASSEPNLQNIPIR 662

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R+  IA     +V AD + IE R++A +
Sbjct: 663 TAEGRR-------------------------IRAAFIAPRDHVIVSADYSQIELRIMAHL 697

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   L++F  GED++  T A  F + P +VT +QR   KV+   L Y   A       
Sbjct: 698 SSDARLLQSFAEGEDVHRATAAEIFGMTPGEVTSEQRRYAKVINFGLIYGMSAHGL---- 753

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               L L   A     +     +     +    +         +   G          R 
Sbjct: 754 -AKNLGLERAAAAAYIDRYFARYPGVAAYMERTRSEARARGYVETVYGR---------RL 803

Query: 513 KHSRVSE----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
               +            +A       G A    K+  +                      
Sbjct: 804 YLPEIRASQAGRRQAAERAAINAPMQGTAADLIKKAMI---------------------- 841

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
                          TR+   +     +L                 +        +VL  
Sbjct: 842 --------------ATRRWLADAALRSRLV----------------LQVHDE---LVL-- 866

Query: 629 HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 E P  +     + L  LMT        +PL  E    + +
Sbjct: 867 ------EVPRDELETVRATLPGLMTGIAD--LSVPLLVEVGHGENW 904


>gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
 gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b]
          Length = 908

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                        + +   E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                                        R    +++ +N    
Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905


>gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A]
 gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A]
          Length = 955

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 102/704 (14%), Positives = 212/704 (30%), Gaps = 151/704 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDP-------VMP 54
           +  D ET               +   ++  +  + +    +      H          + 
Sbjct: 367 IAWDTETTGLNP----------QTAKLVGISCCWGEEVNNIAYIPIEHKEGEQLSKEKVL 416

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
           + L+  LEN     V  N+ F+R VL     + +       T++ +          L ++
Sbjct: 417 EKLRPILENKCYPKVFQNAKFDRLVLLNQ-GIQLN-GVVFDTMLASYVINPDKSHKLSSL 474

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            +    +    +  +  I              + +            YC  D   T  + 
Sbjct: 475 CKQYLTNISSQDYLELKIN-------------KQQTIADLDITQVANYCGMDAYSTFLLV 521

Query: 173 KRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           K L+                EQ L  +   + ++G  +D+   + L++   V    L+++
Sbjct: 522 KPLKKRLAEIPILEKLFLEVEQSLEKVLSKMENQGILIDIEYLNNLSEQNKVNLLCLEEK 581

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276
           +         +    ++L   LF    L  +   +     +T   +L   K   P    +
Sbjct: 582 IYE-EAKEKFNLESPKQLSKILFENLQLSTKKSKKITTGYSTNHAILEKLKGDHPIIDYL 640

Query: 277 FNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   S+     ++ L   + N   R+  +      + TGR S      QN+P  +  
Sbjct: 641 LKYR-TLSKLQSTYIDNLPTLVSNQTHRIHTSFNQSV-TSTGRLSSSKPNLQNIPIRTE- 697

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                   +S  +R   I+ +   LV AD + IE R+LA ++ E
Sbjct: 698 ------------------------LSRKIRKAFISPKKWLLVSADYSQIELRILAHLSQE 733

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              +KA+   +D++  +    F     ++T ++R +GK +   + Y  G++ F + A   
Sbjct: 734 PLLVKAYCDCQDIHTLSAQLLF--DKEEITIEERNLGKTINFGVIYGMGSQRFAREA--- 788

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
              +             + ++    F   ++            +G       + +   + 
Sbjct: 789 --GVTPTKGKDFIKKYHQRYKKVFQFLENLKIEAITKGYVTTILGR------RRYFNFY- 839

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                                    NL    P        ++  
Sbjct: 840 ------------------------------------SDSLRNLYGCNPD-------EINL 856

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDE 631
           +    + +  QL R            +Q  S DI+   M+   K        ++L VHDE
Sbjct: 857 DELKYSYSDSQLLRSAANAP------IQGSSADIIKVAMIKIEKLLRNYQAKLLLQVHDE 910

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +V E P  +       +  +M ++      +PL  E      + 
Sbjct: 911 LVFEIPLEELEELQSEIKQIMENSVK--LTIPLLVEINSGINWM 952


>gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
            araneosa HTCC2155]
 gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera
            araneosa HTCC2155]
          Length = 1036

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/691 (14%), Positives = 207/691 (29%), Gaps = 148/691 (21%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PVMPQVLKEA 60
            +  D ET                   ++       DH         D     + + +K  
Sbjct: 469  VSFDTETTGLD----------VRSATIVGLGLAIRDHHAWYIPFNSDLDKEEILKEIKPF 518

Query: 61   LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GEALKLS 119
              ++ +   A N+ F+  +L     +++       TLV +           +   +L   
Sbjct: 519  FADSSLKFFAQNAKFDLQML-HYAGIEVKNID-FDTLVASFICNPSRQFHDLDSLSLHYL 576

Query: 120  SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            + +    + LI              +              YC  DV +T  +   LE   
Sbjct: 577  NYRKISTESLI----------GKGKKQISMADLPVERVATYCCEDVDITLRLRNELEAEL 626

Query: 180  ----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                        +  L  +   + + G  +++     ++     E  K ++++ +L    
Sbjct: 627  HRRDLRNLFDEMDIPLIPVLSKMENNGISINLGTLEKISSDFSAELKKCEEQIHALAGH- 685

Query: 230  VSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
              +    +++   LF E GL     T    +T   VL +    +     +  +R   S+ 
Sbjct: 686  EFNINSPKQVGVVLFEEMGLKAGKKTATGYSTSAEVLENLAAESEIVRAILRHR-TLSKL 744

Query: 287  AVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                 + L + ++  D R+        A+ TGR +      QN+P  +   +        
Sbjct: 745  ISTYADALPKEVSELDQRIHTRFSQTTAA-TGRLASTQPNLQNIPTRTAEGK-------- 795

Query: 346  LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                              +RS   A EG   +  D + IE R++A ++ +   L+AF   
Sbjct: 796  -----------------SIRSAFQAPEGHHFISCDYSQIELRIMAELSQDPGLLEAFNND 838

Query: 406  EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
             D++  T +  F    ++VTK QR   K +   + +  G            + ++     
Sbjct: 839  FDVHTHTASLVFETELSEVTKQQRYAAKAVNFGIMFGQGP-----YGLAKEIGVSADEAK 893

Query: 466  VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
               ++  + + D + F     E+  +    +                             
Sbjct: 894  QFISNYFKRYPDVQKFMAKCVEDARDKGYSET---------------------------- 925

Query: 526  QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                            +RR +P +              +GR     +  +  S +  T  
Sbjct: 926  -------------SFGRRRYLPEMLSS-----------NGRIRSGAERISVNSPIQGTAA 961

Query: 586  QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--GYDIVLTVHDEIVCETPDTDEFN 643
             + +                   ++        K      ++L +HDE++ E PD +   
Sbjct: 962  DIIKIA-----------------MIKVA-DELEKRQLKSKMLLQIHDELLFEVPDDELEI 1003

Query: 644  ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               L   +MT  P     +PLK +   +K +
Sbjct: 1004 MKELIPQIMTDIPQ--IKVPLKVDCAAAKSW 1032


>gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
 gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23]
          Length = 908

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                        + +   E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                                        R    +++ +N    
Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSWG 905


>gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1]
          Length = 908

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 204/700 (29%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                        + +   E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                   +                                    R    +++ +N    
Sbjct: 782 IINQINFVKNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSWG 905


>gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
 gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043]
          Length = 929

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 106/697 (15%), Positives = 200/697 (28%), Gaps = 153/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET     LT            +I  +F             HD            + 
Sbjct: 354 AFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAQVL 403

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
            + K  LE+  +  +  N  F++ V++   ++D+       T++ +           + +
Sbjct: 404 ALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIA-FDTMLESYVLDSVAGRHDMDS 461

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT  +
Sbjct: 462 LAERY------------LKHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHL 509

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L                    L  +   I   G  +D A+    ++ +      L+ 
Sbjct: 510 HQTLWGKLQPHADLCQVFQAIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAGLET 569

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L           +T + VL+      P    +
Sbjct: 570 QAYELAG-EEFNLASTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLI 628

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N   +   T      + TGR S      QN+P  +   
Sbjct: 629 LEYR-GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 687

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IAS+G  +V AD + IE R++A ++G++
Sbjct: 688 RR-------------------------IRQAFIASKGYSIVAADYSQIELRIMAHLSGDK 722

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G D++  T +  F +A  +VT +QR   K +   L Y   A        +  
Sbjct: 723 GLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSA-----FGLSRQ 777

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           LN+         N   E +   +++    ++   EH       G          R   +R
Sbjct: 778 LNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMAR 837

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +A       G A    K+  + +    +    L                  
Sbjct: 838 -----KGAERAAINAPMQGTAADIIKKAMISIDDWLQKDTPL------------------ 874

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                 + I+Q                    +V  +HD ++   
Sbjct: 875 ---------------------VKMIMQ-------------VHDE---LVFEIHDSVI--- 894

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               E + S +  LM         +PL+ +      +
Sbjct: 895 ----EESISKIKILMEGCMQ--LNVPLQVDIGTGMNW 925


>gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a]
          Length = 908

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 201/700 (28%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                              E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                                        R    +++ +N    
Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905


>gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
 gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
          Length = 917

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 115/700 (16%), Positives = 199/700 (28%), Gaps = 160/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +T            ++  +F  +          H             + 
Sbjct: 343 AFDTETTALDPMT----------ARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVL 392

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L+  LE+ D   V  +  ++  VL     + +       TL+ +              
Sbjct: 393 ARLRPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A      Y   D  +T ++ + 
Sbjct: 451 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQA 500

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D AL    +  +     +L+ +  
Sbjct: 501 LYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAY 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N   GR+        A  TGR +      QN+P  +     
Sbjct: 620 R-GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 677

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G ++V AD + IE R++A ++G+   
Sbjct: 678 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 712

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A         + L 
Sbjct: 713 LRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSA-----FGLASNLG 767

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +   A  +  +     +     +    +    E    +   G          R     ++
Sbjct: 768 ITRDAAKLYIDRYFTRYPGVAQYMEDTRTTAKEKGYVETVFGR---------RLWLPEIN 818

Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    K   + +                          
Sbjct: 819 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTR-------------------- 858

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                            D LA  M+          + VHDE+V 
Sbjct: 859 ---------------------------------DQLASRMI----------MQVHDELVL 875

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E PD +       L  +M         +PL AE      +
Sbjct: 876 EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
 gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a]
 gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a]
          Length = 908

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 204/700 (29%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                        + +   E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                   +                                    R    +++ +N    
Sbjct: 782 IINQINFVKNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSWG 905


>gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
 gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a]
          Length = 908

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 204/700 (29%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                        + +   E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                   +                                    R    +++ +N    
Sbjct: 782 IINQINFVKNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSWG 905


>gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
 gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1]
          Length = 908

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 100/700 (14%), Positives = 202/700 (28%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S        +  Y     +I  +  F +             +        
Sbjct: 341 KYISIDTETSS--------LDIYT--ARLIGISISFKEFEGYYIPIEAKGKIYIEKHYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                              E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NIFTKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S          +  +R
Sbjct: 553 IKSIGI-NFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENIIKHR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINHKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T D R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPDLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                     T                                  R    +++ +N    
Sbjct: 782 ITNQINFVRNT--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  ++     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIKEKNEVEKILKIMMET-AYTLNLPLRANIETGKSWG 905


>gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40]
          Length = 908

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 204/700 (29%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                        + +   E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                   +                                    R    +++ +N    
Sbjct: 782 IINQINFVKNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905


>gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
 gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805]
          Length = 908

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 202/700 (28%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGCYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                              E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                   +                                    R    +++ +N    
Sbjct: 782 IINQINFVKNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905


>gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
 gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I
 gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31]
          Length = 908

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                        + +   E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                                        R    +++ +N    
Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905


>gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1016

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 103/716 (14%), Positives = 200/716 (27%), Gaps = 167/716 (23%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---------VELWDCVHDP--- 51
            +  D ET S            A    ++ F+    D+                VH     
Sbjct: 418  VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVG 467

Query: 52   ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                                LK  LE+  +  VA N  ++  ++K      I    +  T
Sbjct: 468  DLLGGGLAENQIPMGDALARLKALLEDESILKVAQNLKYDYLLMKRY---GIETRSFDDT 524

Query: 97   LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            ++++           +  + E           G   I      +        N       
Sbjct: 525  MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGKANVTFDLVD 572

Query: 154  WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203
                  Y   D  VT  ++  L+P              E+ L  +   +  RG  VD  +
Sbjct: 573  IDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 632

Query: 204  AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259
               L+  +     +L+ E+  L      +    ++L   LF + GL     T+    +T 
Sbjct: 633  LSRLSGELAQSAARLEDEIYVLAG-ERFNIGSPKQLGDILFGKMGLSGGSKTKTGQWSTS 691

Query: 260  QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             +VL        +  +   +  + ++      + L   ++ + +   T   L ++ TGR 
Sbjct: 692  AQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRL 751

Query: 320  SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
            S      QN+P  +    +                         +R+  I++ G KL+ A
Sbjct: 752  SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 786

Query: 380  DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
            D + IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +   +
Sbjct: 787  DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 846

Query: 440  GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
             Y   A           L++             E +    ++    +    +    +   
Sbjct: 847  IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 901

Query: 500  GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            G          R  +  V        +A       G A    +R  + +     +     
Sbjct: 902  GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKIEPALVEVGL-- 954

Query: 560  LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                                                            D +   ++    
Sbjct: 955  -----------------------------------------------ADRVRM-LLQVHD 966

Query: 620  AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
                ++  V DE         E    ++  +M +   P+    +PL+ +   +  +
Sbjct: 967  E---LIFEVEDE-------DVEKAMPVIVSVMENATMPALEMRVPLRVDARAATNW 1012


>gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413]
 gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413]
          Length = 977

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 104/702 (14%), Positives = 201/702 (28%), Gaps = 152/702 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVH-------DPVMPQVL 57
           D ET                D  ++     +             H         ++   L
Sbjct: 391 DTETSGLEP----------RDAALVGIGCCWGTEADASAYIPLAHTKGENLSQDIVLTAL 440

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-E 114
           +  LE+ D      N+ F+R V      +++        ++ +          L  +   
Sbjct: 441 RPILESADYPKTFQNAKFDRLVFL-VQGINL-TGVVFDPMLASYVLNPDTSHNLTDLTQR 498

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L L+ Q   +                   + K            YC   V  T ++  +
Sbjct: 499 YLGLTIQNYVDL----------------VPKGKTIADINISAVANYCCLQVYATFQLVAK 542

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L                 EQ L  +  T+   G  +D A  H L+Q ++++  KL ++  
Sbjct: 543 LREELAKTPNLDKLLREVEQPLESVLATVEYTGVRIDSAYLHELSQQLEIDLAKLQEQAT 602

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQ-AIQVF 277
            L      +    ++L   LF + GL  +         +T    L   +++     +   
Sbjct: 603 ELAG-EKFNLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEKLQEVDETGFVNAI 661

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                 S+     ++ L   +  D +   T     A+ TGR S      QN+P  +    
Sbjct: 662 TEYRTLSKLKSTYVDALPALVRPDTQRVHTDFNQTATSTGRLSSSNPNLQNIPIRTA--- 718

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                  S  +R   +   G  +  AD + IE R+LA ++ E  
Sbjct: 719 ----------------------FSRQIRKAFLPKSGWLMAAADYSQIELRILAHLSQEPL 756

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++A++  ED++  T    F      +  D+R I K +   + Y  G+  F +       
Sbjct: 757 LVQAYQQNEDIHTVTAKLVF--EKDDINSDERRIAKTINFGVIYGMGSLKFSR-----ST 809

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            ++            E +     +   +++        +  +G       + +       
Sbjct: 810 GIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETILGR------RRYFN----- 858

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                      D   +   K  N   + L            +  
Sbjct: 859 --------------------------FDSTSLLNLKGSNPEDIDL------------SKL 880

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDEIV 633
             L      L R            +Q  S DI+   M+       K    ++L VHDE+V
Sbjct: 881 KNLGAKDAGLLRSAANAP------IQGSSADIIKIAMVQIHEVLKKYQARLLLQVHDELV 934

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            E P  +       +  +M +       +PL  +    + + 
Sbjct: 935 FEVPPQEWAELQPQIKSVMENAVK--LSVPLVVDVRAGENWM 974


>gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855]
 gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855]
          Length = 926

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 110/698 (15%), Positives = 202/698 (28%), Gaps = 162/698 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDPVMPQVLKE 59
             D E  S   +T            ++  +F  +                   +  VL  
Sbjct: 358 AFDAEATSRDPMT----------ADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGP 407

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117
            L   D   + HN  ++  +LK    +++       T+V            L  V  +  
Sbjct: 408 VLAR-DTEKLGHNLKYDLLLLKQH-GVEV-GGTLFDTMVAHYLVAPEENHNLDDVARS-- 462

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           + + KM    +LI                             Y   D  ++  +   LE 
Sbjct: 463 VLNYKMVPIADLI----------GDETDRDSMREVEVETAAPYACEDADISYRLADELEA 512

Query: 178 LSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                            L ++  T+   G  +D  +   +   ++   + +++E+  L  
Sbjct: 513 QLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAG 572

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
               +    ++L   LF +  L +   T     +T + VL            V  +    
Sbjct: 573 -EEFNINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVL-DWRST 630

Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            +     L++L E ++ + GRL  +      + TGR S      QN+P  +         
Sbjct: 631 YKLKSTYLDSLGELVHPETGRLHTSFNQTR-TATGRLSSSDPNLQNIPIRTEMGR----- 684

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R   +  +G  L+ AD A IE R+LA M+G+      F
Sbjct: 685 --------------------QIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRATF 724

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G D++    AR + + P  VT +QR+  K +                    G++    
Sbjct: 725 QEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNY--------------GIPYGISPWGL 770

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A                                        + + K +R+ +  VS+L N
Sbjct: 771 AQR------------------------------MRMPVDEAQDIIKQYRKSYPGVSQLLN 800

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           EL    E+  + G A                           GR     D+ ++ S    
Sbjct: 801 EL---VEKAQDKGYAETLL-----------------------GRRRYLPDIDSSNS---N 831

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCET 636
                 R            +Q    D++   M               ++L VHDE+V E 
Sbjct: 832 ARSAAERVA------VNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEV 885

Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           P  +   A  M+   M         +P+  +      +
Sbjct: 886 PPDELDAAQTMIDDEMRDALPL-DDVPVTVDMDTGDNW 922


>gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645]
 gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645]
          Length = 880

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/699 (14%), Positives = 195/699 (27%), Gaps = 149/699 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------M 53
             L  D ET S                 ++  +F +D                      +
Sbjct: 297 KRLSFDTETTSTNP----------RWADLVGISFSWDQGEGVYIPIRSPEGDVKLDESLV 346

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110
            + L+  LEN+ +  V  N  ++  VL     +++       T+V             L 
Sbjct: 347 LEKLRPILENSAIEKVGQNLKYDLVVL-RGVGVNVRGAS-FDTMVAHYLLEAGARSHGLD 404

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +   L+    +  +  ELI                    +      G Y   D  +   
Sbjct: 405 ELS--LRYLQHETVKISELI----------GTGKNQIRMDQVPVDKVGYYAAEDADIPLR 452

Query: 171 IFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +   L                E  L  +   +   G  VDV   + L++        L++
Sbjct: 453 LDPILSERIEAEGLGDLLTDVELPLIDVLVEMEFNGIRVDVERLNELSRQYGERMEVLER 512

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           E+  L      +    ++L T LF E  L +   T+   +T   VL    K      ++ 
Sbjct: 513 EIYQLAGRD-FNINSPKQLGTVLFDELNLPVIKKTKTGPSTDAEVLEQLAKQHDMPAKIV 571

Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             R   ++     ++ L   +     R+  +   + A+ TGR S      QN+P  ++  
Sbjct: 572 QFRQY-AKLKGTYVDALPVLICSKTDRVHTSFNQVVAA-TGRLSSNDPNLQNIPIRTQES 629

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
            E                         +RS  I      KL+ AD + IE RVLA  +G+
Sbjct: 630 RE-------------------------IRSAFIPGTPDWKLLCADYSQIELRVLAHFSGD 664

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              +++++  ED++    +  + V   QVT   R   K +   + Y              
Sbjct: 665 PALMESYQKNEDIHARVASEVYGVPLDQVTSTHRRSAKAINFGVVYGQSP-----FGLAK 719

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L+++        ++  + +   +     +  +          +G    R     R    
Sbjct: 720 SLDIDKDEAYGFIDAYFKRYPGVDVLMEQILVDCQRDGYVRTILGR--RRAIDGVRTAD- 776

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                        ++     +  +  +     ++         + ML   R L       
Sbjct: 777 -------------KRDRLKRQLTMPERTAINTVIQGSAADIIKLAMLRVHRRL------- 816

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                 +  +                            ++                +V E
Sbjct: 817 --EKEGSPAKL---------------------------LLQIHDE-----------LVFE 836

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           TP       + L    M S  + A  +PL  +      +
Sbjct: 837 TPPEYLEQLAQLVREEMESARNLA--IPLVVDIKSGDNW 873


>gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
 gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26]
          Length = 908

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                        + +   E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELRITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                                        R    +++ +N    
Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905


>gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
 gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606]
          Length = 920

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 99/693 (14%), Positives = 197/693 (28%), Gaps = 147/693 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLK 58
            L +D ET S   +          +  ++   F  ++H        +D         + K
Sbjct: 349 ILSLDTETTSTDAI----------EAELVGLCFAVEEHKAFYVAIPNDRKQALQYVNIFK 398

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              E+  +  +  N  ++  VLK    + +   +   T++            +  + E L
Sbjct: 399 SVYEDPSILKIGQNIKYDYEVLKNY-GVTLQ-GKMFDTMLAHYVLQPELRHNMDYMAETL 456

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              + K    +ELI                K     A     EY   D  +T ++   LE
Sbjct: 457 --LNYKTIHIEELIG---------APGKHQKSMRDIAPEDAYEYGAEDADITLQLRNVLE 505

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P              E  L  +   +   G  VD A  H   +I      +L++ +    
Sbjct: 506 PKLKEVAMEALFWDIETPLIPVLADMELNGVRVDTATLHDTAEIFTERMNRLERHIYEEA 565

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL S +   P    +  +R 
Sbjct: 566 G-ETFNIASPKQVGDILFGKLQIMEKPKKTKTGQYVTNEEVLQSLRAKNPIVEDILAHR- 623

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L + ++   +   T      + TGR S      QN+P  S   +E   
Sbjct: 624 GLKKLLGTYVEALPKLIHKRTQHIHTSFNQALTATGRLSSSDPNLQNIPVRSEDGKE--- 680

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R C +   G     AD + IE R++A ++G++  ++A
Sbjct: 681 ----------------------IRKCFVPEPGCLFFSADYSQIELRIMAHLSGDENMIEA 718

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D++  T A+ ++   A VT ++R   K     + Y               + ++ 
Sbjct: 719 FREGFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIYG-----ITTYGLAQRMGIDN 773

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
               +        +   + +    +E   +                              
Sbjct: 774 KEARMLIEDYFTTFPKVKAYMEQAKEEARQKGYAVTLF---------------------- 811

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                               +RR +P +  K           +        +        
Sbjct: 812 -------------------GRRRYLPDINSKNGTVRGFAERNA--------INAPIQGSE 844

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
               ++     +     ENI                      ++L VHDE+       ++
Sbjct: 845 ADIIKIAMIRIWQRFKAENI-------------------RSKMILQVHDELNFSVYPEEK 885

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                +    M         +PL A+      +
Sbjct: 886 ERVEKIVLEEMQGACQ--LKVPLTADAGWGNNW 916


>gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy]
 gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy]
          Length = 948

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 102/699 (14%), Positives = 206/699 (29%), Gaps = 164/699 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVL 57
             D ET    ++             VI F+F +++        VH+         +  +L
Sbjct: 382 AFDLETTGLDEML----------AQVIGFSFCWEEGKSYYVPLVHETKELVDREQVRSLL 431

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEA 115
           +E L +  +++V  N  ++  VL   + + +P + +  T+V A      S   +  + E 
Sbjct: 432 EEYLGSGRLSLVGQNIKYDYKVL-RQWGI-MPKNIYFDTMVAAWLLDSTSVFNMDYLAEK 489

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                         +       T     D+              Y   D  VT  ++K  
Sbjct: 490 Y-------------LDYKTVHYTDIVPKDKLLS--DIPLEQAVFYGAEDADVTFRLYKLF 534

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
             L             E  L  +   +   G  ++  L   L+   +     +  ++ ++
Sbjct: 535 SELLGARNLRSLLDEVEMPLLVIIANMELAGIYLERKLIEPLSAEFEGRIDAIRNQIFAI 594

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMR 282
                 +    ++L+  LF+E  +     T +   T   VL   +   P+   +   R  
Sbjct: 595 CGHA-FNLNSPQQLQEVLFVERNIPTGAKTRSGFSTSTDVLEPLRDDYPEVELILQYR-T 652

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++     ++ L   +N              + TGR S      QN+P  +         
Sbjct: 653 LNKLKTTYIDKLPLQINEKTHRIHPSFAQTGTETGRLSCKDPNLQNIPVRTEEGRR---- 708

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +RS  +   G   + AD + IE  VLA MA +     AF
Sbjct: 709 ---------------------IRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLKGAF 747

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D++ +T +  F+V   QVT  QR I K +                    G+     
Sbjct: 748 AAGIDVHSSTASLIFDVPLDQVTPVQRRIAKTIN--------------FGVMYGMG---- 789

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                         A++     +  ++    + +++S V     
Sbjct: 790 --------------------------THSLAMDLKIPHSEAKQFIDQYFERYSSVRSFVE 823

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                 +Q                             +    G      ++ +  +    
Sbjct: 824 ATKTMSQQ--------------------------VGSVSTLLGHVRTITEINSRSAVER- 856

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET 636
              +  R           ++Q  + DI+   M+         K G  ++L +HDE++ E 
Sbjct: 857 --AKAERIA------VNTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIFEV 908

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           P+ + E   +++   +         +PL+        + 
Sbjct: 909 PEAEIEETKAVVKEALEHAVK--LSVPLRTSIEVGSNWG 945


>gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
 gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400]
          Length = 918

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 109/698 (15%), Positives = 200/698 (28%), Gaps = 152/698 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VM 53
           + ID ET S           Y E   ++  +F  +          HD             
Sbjct: 341 IAIDTETTSLN---------YME-AELVGLSFATEAGKAAYLPLAHDYLDAPLQIDKASA 390

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAV 112
            + L+  LE      V  N  ++ ++L     + +   R   T++ +      ++     
Sbjct: 391 LEKLRPILEGDTPQKVGQNLKYDMSILANA-GISLKGIR-FDTMLESYVFNSIASRHDMD 448

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           G ALK    K    +E                +    ++    + G Y   D  +T  + 
Sbjct: 449 GLALKYLGHKNISFEE----------VAGKGAKQLTFNQVHLDIAGPYAAEDADITLRLH 498

Query: 173 KRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P   KE             L  +   +  +G  +D  L    +  +  +   L+ +
Sbjct: 499 QHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSMLLSQQSGELAKKLDDLENK 558

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              +      +    ++L+T  F + G  ++  T     +T + VL       P    + 
Sbjct: 559 AYEI-AEEKFNLASPKQLQTLFFEKLGYPIKKKTPKGAPSTAEDVLIELALDYPLPKVIL 617

Query: 278 NNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            +R   ++      + L   +N + GR+  +     A+ TGR S      QN+P  +   
Sbjct: 618 EHR-SLAKLKSTYTDKLPLMVNATTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRTEEG 675

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G+K++ AD + IE R++A ++ + 
Sbjct: 676 RR-------------------------IRQAFIAPAGRKILAADYSQIELRIMAHLSQDA 710

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF  G+D++  T A  F V   +VT +QR   K +   L Y   A           
Sbjct: 711 GLLTAFAEGKDIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSA-----FGLAKQ 765

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L++         ++    +     +    +    E        G      +   R    R
Sbjct: 766 LDIPRNEAQKYIDTYFARYPGVLKYMEETRAIAAELGYVSTLFGRRLYLPEINDRNAMRR 825

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                    +A       G A    K+  + +           + L              
Sbjct: 826 -----QAAERAAINAPMQGTAADIIKKAMIAIHQWINQDTQGEITL-------------- 866

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                   I+Q                    +V  V DE     
Sbjct: 867 ------------------------IMQ-------------VHDE---LVFEV-DE----- 880

Query: 637 PDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                      +  LM    S    + L AE      +
Sbjct: 881 --AQAETLKTKVCDLMAQAAS--LDVTLLAEAGIGDNW 914


>gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
 gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7]
          Length = 908

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                        + +   E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEILIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELRITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                                        R    +++ +N    
Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905


>gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC
           33392]
          Length = 932

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 107/701 (15%), Positives = 202/701 (28%), Gaps = 157/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
               +D ET +   +             ++  +F  ++                  +   
Sbjct: 356 KLFALDTETNNLDYMA----------ANLVGISFALENGEAAYLPLQLDYLGAPKTLEKT 405

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
               +LK  LEN  +  V  N  ++ T+      +D+       T++ +          +
Sbjct: 406 TALALLKPVLENPAIQKVGQNFKYDLTIFARN-GIDVQGVA-FDTMLESYVLNSTGRHNM 463

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G + I      E            ++       EY   D  VT 
Sbjct: 464 DDLAKRY--------LGHQTITF----EEIAGKGKNQLTFNQIPLEKAAEYAAEDADVTM 511

Query: 170 EIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L  +   +  RG  +D       +  +    ++L
Sbjct: 512 KLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRLSEL 571

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++   L      +    ++L+  LF + GL           +T + VL           
Sbjct: 572 EEQAYVLAGQP-FNLASTKQLQEILFDKLGLPVIQKTPKGAPSTNEEVLEELAFSHELPK 630

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R   S+      + L + +N       T      + TGR S      QN+P  + 
Sbjct: 631 VLVEHR-GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 689

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++ 
Sbjct: 690 EGRR-------------------------IRQAFIAREGFTVVAADYSQIELRIMAHLSQ 724

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F VA  +VT +QR   K +   L Y   A        +
Sbjct: 725 DQGLINAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 779

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L +         +   + +   + F   ++E        +                  
Sbjct: 780 RQLGIGRADAQSYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLF--------------- 824

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                      +R  +P +                R      V 
Sbjct: 825 --------------------------GRRLYLPDINSSNGM----------RRKAAERVA 848

Query: 575 NNRSYLNTTTRQLTREYTY-GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            N     T    + R       KL  +       DI    M+          + VHDE+V
Sbjct: 849 INAPMQGTAADIIKRAMIQLDQKLQNDP------DI---AMI----------MQVHDELV 889

Query: 634 CETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E   +  EF + ++   M S       +PL  +  +   +
Sbjct: 890 FEVRSEKVEFYSKLIKTHMESAADLV--VPLIVDVGQGTNW 928


>gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5'
           exonuclease [Haemophilus parainfluenzae T3T1]
          Length = 932

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 107/701 (15%), Positives = 204/701 (29%), Gaps = 157/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
               +D ET +   +             ++  +F  ++                  +   
Sbjct: 356 KLFALDTETDNLDYMA----------ANLVGISFALENGEAAYLPLQLDYLGAPKTLEKT 405

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
               +LK  LEN  +  V  N  ++ T+      +D+       T++ +          +
Sbjct: 406 TALTLLKPILENPTIQKVGQNFKYDLTIFARN-GIDVQGVA-FDTMLESYVLNSTGRHNM 463

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G + I+     E            ++       EY   D  VT 
Sbjct: 464 DDLAKRY--------LGHQTISF----EEIAGKGKNQLTFNQIQLEQAAEYAAEDADVTM 511

Query: 170 EIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L  +   +  RG  +D       +  +    ++L
Sbjct: 512 KLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRLSEL 571

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAI 274
           +++   L      +    ++L+  LF + GL           +T + VL           
Sbjct: 572 EEQAYVLAGQP-FNLASTKQLQEILFDKLGLPVIQKTPKGAPSTNEEVLEELAFSHELPK 630

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R   S+      + L + +N       T      + TGR S      QN+P  + 
Sbjct: 631 VLVEHR-GLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 689

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA EG  +V AD + IE R++A ++ 
Sbjct: 690 EGRR-------------------------IRQAFIAREGFTVVAADYSQIELRIMAHLSQ 724

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q  + AF  G+D++ +T A  F VA  +VT +QR   K +   L Y   A        +
Sbjct: 725 DQGLINAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSA-----FGLS 779

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L++         +   + +   + F   ++E        +                  
Sbjct: 780 RQLSIGRADAQSYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLF--------------- 824

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                      +R  +P +                R      V 
Sbjct: 825 --------------------------GRRLYLPDINSSNGM----------RRKAAERVA 848

Query: 575 NNRSYLNTTTRQLTREYTY-GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            N     T    + R       KL  +       DI    M+          + VHDE+V
Sbjct: 849 INAPMQGTAADIIKRAMIQLDQKLQNDP------DI---AMI----------MQVHDELV 889

Query: 634 CETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E   +  EF + ++   M S       +PL  +  +   +
Sbjct: 890 FEVRSEKVEFYSKLIKTHMESAADLV--VPLIVDVGQGTNW 928


>gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902]
 gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902]
          Length = 998

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 111/716 (15%), Positives = 209/716 (29%), Gaps = 165/716 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHD----------- 50
           + +D ET                   ++     +   +  +      H            
Sbjct: 400 IAVDTETTDLNPFK----------AELVGVGVCWGEANDALAYIPIGHKPPSELSEATPP 449

Query: 51  -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                  +   L   L +        N+ ++R +L     L +     I TL+       
Sbjct: 450 QQLPLETVLMALSPWLASPQHPKALQNAKYDRLILLRH-GLTLN-GVVIDTLLADYLRDA 507

Query: 106 P--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                L  + E                    +  T+  L  + +     A      YC  
Sbjct: 508 AAKHGLDLMSER---------------EFGFRPTTYGDLVGKKQTFADVAIEPASLYCGM 552

Query: 164 DVTVTREIFKRLEPLSSKE------------QELWYLDQTINDRGYCVDVALAHTLNQIV 211
           DV VTR +  +L                   Q L  +   +   G  +DV    TL+  +
Sbjct: 553 DVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLSDEL 612

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSN 266
                +L+ + + +      +    ++L   LF   GL  +    T+   +T   VL   
Sbjct: 613 GSTLNRLETDAKQVAEVD-FNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKL 671

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFP 325
           +   P    V  +R+  S+     ++ L + +    GR+         + TGR S     
Sbjct: 672 ENDHPVVPLVLEHRV-LSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPN 729

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +                           S  +R   +  EG  L+ AD + IE
Sbjct: 730 LQNIPVRTE-------------------------YSRRIRKAFLPQEGWTLLSADYSQIE 764

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+L  ++GE+   +A+ TG+D++  T      +    V+ D+R +GK +   + Y  GA
Sbjct: 765 LRILTHLSGEEVLQEAYSTGDDVHALTARLL--LDKDDVSADERRLGKTINFGVIYGMGA 822

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
              Q+ A  TG++  +           + +     F    +         +  +G     
Sbjct: 823 ---QRFARETGVS--SAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILG----- 872

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                                                 R  P  + +     L+   P  
Sbjct: 873 --------------------------------------RRRPFHFDRNGLGRLLGKDPL- 893

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
                 ++  + +       Q  R            +Q  S DI+   M+          
Sbjct: 894 ------EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAVLLSQG 941

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
               ++L VHDE+V E           ++ + M +       +PL  E    + + 
Sbjct: 942 IPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAVK--LSVPLVVETGVGRDWM 995


>gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13]
 gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13]
          Length = 933

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 108/701 (15%), Positives = 203/701 (28%), Gaps = 160/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET     LT            +I  +F             HD            + 
Sbjct: 357 AFDTETDGLDTLT----------ANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRAYVL 406

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           + LK  LE+     V  N  F+  +L    ++ +       T++ +           + +
Sbjct: 407 ETLKPLLEDEKALKVGQNLKFDMGLLARY-DITLRGIA-FDTMLESYVLDSVGGRHDMDS 464

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +    ++ A      Y   D  VT ++
Sbjct: 465 LSDRY--------LGHKTVTF----EEIAGKGKKQLTFNQIALEQAAPYAAEDADVTLQL 512

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              + P               E  L  +   I   G  +D ++  T +  +     +L+ 
Sbjct: 513 HLAMWPQLKESAELLTVFNEIEMPLVPVLSHIERTGVLIDQSILATHSIELTKRLAELEI 572

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 573 QAHEL-AEEPFNLASTKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKVI 631

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++      + L   +N       T      + TGR S      QN+P  +   
Sbjct: 632 LEYR-GLAKLKTTYTDKLPLMINPFSGRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEG 690

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA EG ++V AD + IE R++A ++ ++
Sbjct: 691 RR-------------------------IRQAFIAPEGYRIVAADYSQIELRIMAHLSQDE 725

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             LKAF  G+D++  T A  F V   +VT +QR   K +   L Y   A           
Sbjct: 726 GLLKAFAEGKDIHRATAAEVFGVQLDKVTGEQRRSAKAINFGLIYGMSA-----FGLARQ 780

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +         +   E +     +    ++   E        G          R     
Sbjct: 781 LGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYVSTLDGR---------RLYLPD 831

Query: 517 VSE----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           VS           +A       G A    KR  + +    + ++  ++ +          
Sbjct: 832 VSSSNGMRRKAAERAAINAPMQGTAADIIKRAMIEVDAWLQGQDEPLVRM---------- 881

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                                       I+Q                    +V  +H E 
Sbjct: 882 ----------------------------IMQ-------------VHDE---LVFEIH-ES 896

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V E       ++  +  LM ++ + A  +PLK +      +
Sbjct: 897 VIEA------SSQRIRELMENSMTLA--VPLKVDVGVGANW 929


>gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 922

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 115/703 (16%), Positives = 200/703 (28%), Gaps = 162/703 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
            +D ET S   L             ++  +              HD            + 
Sbjct: 344 ALDTETTSLDPLA----------ARIVGISLAVAPGEAAYLPLAHDYPGVPAQLPCDEVL 393

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP------SA 108
             LK  LE+     +  +  +++ VL     + +   R   TL+ +              
Sbjct: 394 ARLKSWLESPGHAKIGQHLKYDQHVLANH-GIALAGVR-HDTLLQSYVLESGKDGVRGHD 451

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L  +             G   I      E             + A     EY   D  + 
Sbjct: 452 LGQLATRH--------LGLATIPY----EALCGKGANQIGFEQVAIGQAAEYAAEDADLC 499

Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           + +   L P               E  +  +   +  +G  +D  L    +  +      
Sbjct: 500 QRLHAVLYPQIVADAGLARVYAEIEIPVRDILFRMERQGVLIDGELLTRQSHEIGKRLLD 559

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273
           L+    +       +    ++L   LF + GL ++  T +    T + VLS      P  
Sbjct: 560 LEARAHAAAGQP-FNVNSPKQLAEILFDKLGLPVKKKTPSGTPSTDEEVLSELALDYPLP 618

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            ++     + ++      + L + +N+  GR+  +     A  TGR +      QN+P  
Sbjct: 619 -KILLESRQLAKLKGTYTDKLPKMVNAGTGRVHTSYAQAVA-VTGRLASSDPNLQNIPVR 676

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R+  IA  G  LV AD + IE R++A +
Sbjct: 677 TAEGRR-------------------------IRAAFIAPPGSSLVSADYSQIELRIMAHL 711

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   L+AF  GED++  T A  F V P  V  DQR + KV+   L Y   A       
Sbjct: 712 SEDARLLEAFAQGEDVHRATAAEIFGVRPVDVGPDQRRVAKVINFGLIYGMSA-----FG 766

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               L+L   A           +     +    +E        +   G          R 
Sbjct: 767 LARELDLERGAAQAYIERYFARYPGVARYMATTREAARTQGYVETVFGR---------RL 817

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
               +                                               GR      
Sbjct: 818 WLPEIRSSQA------------------------------------------GRRQ---- 831

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
            G  R+ +N   +          K     VQ           ++A +    +++ VHDE+
Sbjct: 832 -GAERAAINAPMQG---SAADLIKSAMIAVQG---------WLDAERLQTRLLMQVHDEL 878

Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWA-KGLPLKAEGYESKRY 673
           V E PD +       L  LMT    +A   +PL  +      +
Sbjct: 879 VLEVPDDELARVRGELPRLMT---DFASLRVPLVVDVGVGANW 918


>gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
 gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
 gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
 gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
          Length = 917

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 116/700 (16%), Positives = 198/700 (28%), Gaps = 160/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F  +          H             + 
Sbjct: 343 AFDTETTALDPML----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 392

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
             LK  LE+ D   V  +  ++  VL      DI ++     TL+ +             
Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESYVVESHRTHDMDS 449

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            AL+    K            K E       +       A     EY   D  +T ++  
Sbjct: 450 LALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHH 499

Query: 174 RLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            L P               E  +  + + +   G  +D A  H  +  +     +L+ E 
Sbjct: 500 ALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIELEGEA 559

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             L  G   +    +++    F +  L +   T +    T + VL    +  P    +  
Sbjct: 560 YELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLE 618

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   S+      + L   +N       T      + TGR +      QN+P  +     
Sbjct: 619 HR-GLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRR 677

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G ++V AD + IE R++A ++G+   
Sbjct: 678 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 712

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A         + L 
Sbjct: 713 LRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSA-----FGLASNLG 767

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +   A  +  +     +     +    +    E    +   G          R     ++
Sbjct: 768 ITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGR---------RLWLPEIN 818

Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    K   + +                          
Sbjct: 819 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTR-------------------- 858

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                            D LA  M+          + VHDE+V 
Sbjct: 859 ---------------------------------DQLASRMI----------MQVHDELVL 875

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E P+ +       L  +M         +PL AE      +
Sbjct: 876 EVPEGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD]
 gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD]
          Length = 917

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 114/700 (16%), Positives = 199/700 (28%), Gaps = 160/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +T            ++  +F  +          H             + 
Sbjct: 343 AFDTETTALDPMT----------ARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVL 392

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L+  LE+ D   V  +  ++  VL     + +       TL+ +              
Sbjct: 393 ARLRPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A      Y   D  +T ++ + 
Sbjct: 451 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQA 500

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D AL    +  +     +L+ +  
Sbjct: 501 LYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAY 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N   GR+        A  TGR +      QN+P  +     
Sbjct: 620 R-GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 677

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G ++V AD + IE R++A ++G+   
Sbjct: 678 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 712

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A         + L 
Sbjct: 713 LRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSA-----FGLASNLG 767

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +   A  +  +     +     +    +    +    +   G          R     ++
Sbjct: 768 ITRDAAKLYIDRYFTRYPGVAQYMEDTRTAAKDKGYVETVFGR---------RLWLPEIN 818

Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    K   + +                          
Sbjct: 819 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTR-------------------- 858

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                            D LA  M+          + VHDE+V 
Sbjct: 859 ---------------------------------DQLASRMI----------MQVHDELVL 875

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E PD +       L  +M         +PL AE      +
Sbjct: 876 EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
 gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
          Length = 917

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 115/700 (16%), Positives = 200/700 (28%), Gaps = 160/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +T            ++  +F  +          H             + 
Sbjct: 343 AFDTETTALDPMT----------ARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDDVL 392

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ D   V  +  ++  VL     + +       TL+ +              
Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 450

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A      Y   D  +T ++ + 
Sbjct: 451 ALRHLGVKTI----------KYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQA 500

Query: 175 LEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  +  + + +   G  +D AL    +  +     +L+ +  
Sbjct: 501 LYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAY 560

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 561 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 619

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N   GR+        A  TGR +      QN+P  +     
Sbjct: 620 R-GLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTAEGRR 677

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IAS G ++V AD + IE R++A ++G+   
Sbjct: 678 -------------------------IREAFIASPGHRIVSADYSQIELRIMAHISGDASL 712

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F V P +V  DQR I KV+   L Y   A         + L 
Sbjct: 713 LRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSA-----FGLASNLG 767

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +   A  +  +     +    ++    +    +    +   G          R     ++
Sbjct: 768 ITRDAAKLYIDRYFTRYPGVAHYMEDTRTTAKDKGYVETVFGR---------RLWLPEIN 818

Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    K   + +                          
Sbjct: 819 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTR-------------------- 858

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                            D LA  M+          + VHDE+V 
Sbjct: 859 ---------------------------------DQLASRMI----------MQVHDELVL 875

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E PD +       L  +M         +PL AE      +
Sbjct: 876 EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913


>gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937]
 gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937]
          Length = 944

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 102/717 (14%), Positives = 197/717 (27%), Gaps = 177/717 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------------- 49
             D ET     LT            ++  +              H               
Sbjct: 353 SFDTETDGLDTLT----------ANLVGVSLAIKPGEAAYLPLGHITSRVYSSNIYSSTV 402

Query: 50  -----------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
                         +  +LK  LE+  +  +  N  F++ V+     +D+       T++
Sbjct: 403 SPATRMSTQLDRDRVLALLKPLLEDDGIRKIGQNLKFDKGVMARY-GIDLRGIA-FDTML 460

Query: 99  LARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            +           + ++ E              L  +    E             +    
Sbjct: 461 ESYVLDSVAGRHDMDSLSERY------------LQHKTITFEEIAGKGKNQLTFDQIPLA 508

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQEL-----------WYLDQTINDRGYCVDVALA 204
               Y   D  VT  + + L      +QEL             +   I   G  +D  + 
Sbjct: 509 QASVYAAEDADVTLRLHETLWAKLEPQQELRKVFQNIDMPLVPVLSRIERTGVLIDTTIL 568

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQ 260
              ++ +     +L+ +   L      +    ++L   L+ +  L +   T     +T +
Sbjct: 569 AEHSRELTQRLAELEVQAHELAG-EAFNLSSPKQLGAILYEKLQLPVIKKTPKGAPSTNE 627

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL+      P    +  +R   ++      + L + +N   R   T      + TGR S
Sbjct: 628 EVLAELALDYPLPKLILEHR-GLAKLKSTYTDKLPQMINPLTRRVHTSYHQAVTATGRLS 686

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QN+P  +                              +R   IA EG +++ AD
Sbjct: 687 SSDPNLQNIPVRNEEGRR-------------------------IRQAFIAPEGYRILAAD 721

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R++A ++ +   L+AF  G D++  T A  F +   +VT +QR   K +   L 
Sbjct: 722 YSQIELRIMAHLSRDAGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLI 781

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y   A        +  L +         N   E +   + +    ++   +        G
Sbjct: 782 YGMSA-----FGLSRQLAIPRSEAQKYMNLYFERYPGVQEYMERTRQQAVDQGYVSTLDG 836

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                     R  +SR         +A       G A    K+  + +    + +  L+ 
Sbjct: 837 RRLYLPDIHSRNVNSR-----KAAERAAINAPMQGTAADIIKKAMIAIDAWLRQEKPLVT 891

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
           ML                                       +Q                 
Sbjct: 892 ML---------------------------------------MQ-------------VHDE 899

Query: 621 GYDIVLTVH----DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +V  VH    DE            ++ + +LM         +PL+ +      +
Sbjct: 900 ---LVFEVHHSVLDE-----------ASAKIRNLMEGCMQ--LDVPLQVDIGTGSNW 940


>gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
 gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718]
          Length = 912

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 107/699 (15%), Positives = 208/699 (29%), Gaps = 156/699 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           + ID ET S   +          +  ++  +F  +          H             +
Sbjct: 337 VSIDTETTSLNPM----------EAKLVGLSFCMELGQAAYIPLAHHYPGVPSQLNREQV 386

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111
            Q LK  LE+ +   +  N  ++R V      + +       TL+ +       +  L +
Sbjct: 387 LQRLKPWLESDEKLKIGQNLKYDRHVFANH-GVMLNGI-VHDTLLQSYVLESHLSHDLDS 444

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G + I+             +     +      G Y   D  +   +
Sbjct: 445 LASRH--------LGIQTISYD----EVTGKGAKRIGFEQVEIHRAGIYAAEDADIPLRL 492

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P+              E  L  +   I   G  +D  L    +  +  +   L+Q
Sbjct: 493 HRVLYPVISQDAHLEYIYQQIEIPLLEVLFRIERNGVLLDTDLLRVQSGELTQQLVALEQ 552

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +  SL      +    ++++  LF +  L +   T     +T + VL       P    +
Sbjct: 553 QAHSLAGHA-FNLNSTKQIQEILFGQHKLPVIKKTPKGVPSTDEEVLQRLASDYPLPKVL 611

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
            + R   ++     ++ L + +N   GR+        A  TGR +      QN+P  +  
Sbjct: 612 LDYR-GLAKLKSTYIDKLPQMVNKQTGRVHTHYAQAVA-VTGRLASNDPNLQNIPVRTPE 669

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA +G  ++ AD + IE R++A ++G+
Sbjct: 670 GRR-------------------------IREAFIAPDGWLIMSADYSQIELRIMAHISGD 704

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AF  G+D++  T A  F V   QV  +QR   KV+   L Y        +    T
Sbjct: 705 AGLIHAFSEGQDIHRATAAEVFGVPVEQVNPEQRRYAKVINFGLIYGMS-----EFGLAT 759

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +   A     +     +    ++ +  +E   +H   +  +G   +       Q++ 
Sbjct: 760 QLGIERTAARTFIDRYFARYPGVADYMQRTRELAKQHGYVETVLGRRLQLSDIRSNQRNR 819

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           ++        +A       G A    K   + +                           
Sbjct: 820 QM-----GAERAAINAPMQGTAADIIKLAMISVHRW------------------------ 850

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                L E  +Q+         M         +VL    E++  
Sbjct: 851 ---------------------LAEAQLQS------KLIM-QVHDE---LVL----EVLV- 874

Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +       L  LM +       +PLK +    K +
Sbjct: 875 ---DELPVIKENLPRLMENVLK--LDVPLKVQTGIGKNW 908


>gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str.
            Chicago]
          Length = 1015

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 103/724 (14%), Positives = 194/724 (26%), Gaps = 193/724 (26%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--------------- 47
             +  D ET                D  ++ F+  F +                       
Sbjct: 410  VVAFDCETDGLHP----------HDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCT 459

Query: 48   ---------------------------VHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80
                                        +   +   L+    +  +T+V HN  F+  V+
Sbjct: 460  CARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVM 519

Query: 81   KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                  +        T+V A                      +      I      E   
Sbjct: 520  HRAGVFEHCACNIFDTMVAAWLLDPDRG--------TYGMDVLAASFFQIRTITFEEVVA 571

Query: 141  CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQ 190
                + +      +     Y   D  +T  ++  L+               E  L  +  
Sbjct: 572  ----KGQTFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILA 627

Query: 191  TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
             + + G  +   +   L +       + + ++ SL      +    ++L+T LF E  L 
Sbjct: 628  RMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGH-EFNIGSPKQLQTVLFQELHLP 686

Query: 251  LEDL---TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
                     +T   VL    +  P A ++   R   S+       +L +  +  GR+  +
Sbjct: 687  PGKKNTQGYSTDHSVLKKLARKHPIAEKILLFR-DLSKLRSTYTESLAKLADQTGRVHTS 745

Query: 308  LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
               +G + TGR S      QN+P  S    +                         +R  
Sbjct: 746  FVQIG-TATGRLSSRNPNLQNIPIKSTEGRK-------------------------IRQA 779

Query: 368  VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
              A+ G +L+ AD   IE  VLA ++ ++  L AF    D++  T A  FNV+   V   
Sbjct: 780  FQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPA 839

Query: 428  QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
             R I K +                    G++    +                        
Sbjct: 840  MRRIAKTINF--------------GIVYGMSAFRLSD----------------------- 862

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                   E        +     + + +  V     ++    EQT + G            
Sbjct: 863  -------ELKISQKEAQSFIYRYFETYPGVYAFSTQV---AEQTRKTGYVTSLA------ 906

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                             GR    R + +  +       +  R            +Q+ + 
Sbjct: 907  -----------------GRRRYIRTIDSRNTLER---ARAERMA------LNTQIQSSAA 940

Query: 608  DILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660
            DI+   M+   +A         ++L VHDE++ E P  +      +    M         
Sbjct: 941  DIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE--LS 998

Query: 661  LPLK 664
            +PL+
Sbjct: 999  IPLR 1002


>gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
 gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I
 gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14]
          Length = 997

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 103/724 (14%), Positives = 194/724 (26%), Gaps = 193/724 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--------------- 47
            +  D ET                D  ++ F+  F +                       
Sbjct: 392 VVAFDCETDGLHP----------HDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCT 441

Query: 48  ---------------------------VHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80
                                       +   +   L+    +  +T+V HN  F+  V+
Sbjct: 442 CARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVM 501

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                 +        T+V A                      +      I      E   
Sbjct: 502 HRAGVFEHCACNIFDTMVAAWLLDPDRG--------TYGMDVLAASFFQIRTITFEEVVA 553

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQ 190
               + +      +     Y   D  +T  ++  L+               E  L  +  
Sbjct: 554 ----KGQTFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILA 609

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            + + G  +   +   L +       + + ++ SL      +    ++L+T LF E  L 
Sbjct: 610 RMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGH-EFNIGSPKQLQTVLFQELHLP 668

Query: 251 LEDL---TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
                    +T   VL    +  P A ++   R   S+       +L +  +  GR+  +
Sbjct: 669 PGKKNTQGYSTDHSVLKKLARKHPIAEKILLFR-DLSKLRSTYTESLAKLADQTGRVHTS 727

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
              +G + TGR S      QN+P  S    +                         +R  
Sbjct: 728 FVQIG-TATGRLSSRNPNLQNIPIKSTEGRK-------------------------IRQA 761

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
             A+ G +L+ AD   IE  VLA ++ ++  L AF    D++  T A  FNV+   V   
Sbjct: 762 FQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPA 821

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R I K +                    G++    +                        
Sbjct: 822 MRRIAKTINF--------------GIVYGMSAFRLSD----------------------- 844

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                  E        +     + + +  V     ++    EQT + G            
Sbjct: 845 -------ELKISQKEAQSFIYRYFETYPGVYAFSTQV---AEQTRKTGYVTSLA------ 888

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                            GR    R + +  +       +  R            +Q+ + 
Sbjct: 889 -----------------GRRRYIRTIDSRNTLER---ARAERMA------LNTQIQSSAA 922

Query: 608 DILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660
           DI+   M+   +A         ++L VHDE++ E P  +      +    M         
Sbjct: 923 DIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE--LS 980

Query: 661 LPLK 664
           +PL+
Sbjct: 981 IPLR 984


>gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 933

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 96/700 (13%), Positives = 178/700 (25%), Gaps = 159/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   L             +I  +   +          H               
Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTQAL 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  V  +  +  ++  V++    +++  +    TL+ +           + +
Sbjct: 408 AQLVPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-HDTLLESFVLNSGSARHDMDS 465

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +  P  + +      Y   D  +T  +
Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLEDATRYAAEDADITLRL 513

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  +   I   G CVD A     +  +        Q
Sbjct: 514 HHVLGPKLAAEPGLERVYREIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 574 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 632

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 633 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 691 GRR-------------------------IRRAFVAPAGRKLIACDYSQIELRIMAHLSGD 725

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++  T A  F      V+ D+R   K +   L Y   A          
Sbjct: 726 PGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSA-----FGLAR 780

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-RVKKAWRQKH 514
            L +               +    +F    ++   +    +   G         A     
Sbjct: 781 QLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINA----- 835

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    KR  V +                          
Sbjct: 836 -GSQGQRAGAERAAINAPMQGTAADIIKRAMVSVDGW----------------------- 871

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                         R                        ++                +V 
Sbjct: 872 --------IAGHAQRAKM---------------------ILQVHDE-----------LVF 891

Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E          S +   M S       +PL  +      +
Sbjct: 892 EADTDFVDTLLSEVTTRMASAAE--LRVPLVVDSGIGDNW 929


>gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema
           pallidum]
          Length = 997

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 102/724 (14%), Positives = 193/724 (26%), Gaps = 193/724 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--------------- 47
            +  D ET                D  ++ F+  F +                       
Sbjct: 392 VVAFDCETDGLHP----------HDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCT 441

Query: 48  ---------------------------VHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80
                                       +   +   L+    +  +T+V HN  F+  V+
Sbjct: 442 CARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVM 501

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                 +        T+V A                      +      I      E   
Sbjct: 502 HRAGVFEHCACNIFDTMVAAWLLDPDRG--------TYGMDVLAASFFQIRTITFEEVVA 553

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQ 190
               + +      +     Y   D  +T  ++  L+               E  L  +  
Sbjct: 554 ----KGQTFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILA 609

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            + + G  +   +   L +       + + ++ SL      +    ++L+T LF E  L 
Sbjct: 610 RMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGH-EFNIGSPKQLQTVLFQELHLP 668

Query: 251 LEDL---TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
                    +T   VL    +  P A ++   R   S+       +L +  +  GR+  +
Sbjct: 669 PGKKNTQGYSTDHSVLKKLARKHPIAEKILLFR-DLSKLRSTYTESLAKLADQTGRVHTS 727

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
              +G + TGR S      QN+P  S    +                         +R  
Sbjct: 728 FVQIG-TATGRLSSRNPNLQNIPIKSTEGRK-------------------------IRQA 761

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
             A+ G +L+ AD   IE   LA ++ ++  L AF    D++  T A  FNV+   V   
Sbjct: 762 FQATVGHELISADYTQIELVALAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPA 821

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R I K +                    G++    +                        
Sbjct: 822 MRRIAKTINF--------------GIVYGMSAFRLSD----------------------- 844

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                  E        +     + + +  V     ++    EQT + G            
Sbjct: 845 -------ELKISQKEAQSFIYRYFETYPGVYAFSTQV---AEQTRKTGYVTSLA------ 888

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                            GR    R + +  +       +  R            +Q+ + 
Sbjct: 889 -----------------GRRRYIRTIDSRNTLER---ARAERMA------LNTQIQSSAA 922

Query: 608 DILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660
           DI+   M+   +A         ++L VHDE++ E P  +      +    M         
Sbjct: 923 DIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE--LS 980

Query: 661 LPLK 664
           +PL+
Sbjct: 981 IPLR 984


>gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256]
 gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256]
          Length = 952

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 115/701 (16%), Positives = 205/701 (29%), Gaps = 154/701 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 373 DTIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 422

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 423 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 480

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 481 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIEQATEYAAQDADFAL 528

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 529 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 588

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  ++      +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 589 EAYAVAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 647

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 648 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 705

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 706 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 740

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     +   
Sbjct: 741 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 795

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 796 AKSLGIDNLSAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 853

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R LV  D+
Sbjct: 854 NANARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLVSDDL 894

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            +                         I+Q                    +VL       
Sbjct: 895 KSKL-----------------------IMQ-------------VHDE---LVL------- 908

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P+ +       L  +M         +PL AE      +
Sbjct: 909 -EVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 948


>gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A]
 gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A]
          Length = 986

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 113/719 (15%), Positives = 213/719 (29%), Gaps = 166/719 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD--------- 50
             + ID ET S                 ++   F F +    +      H          
Sbjct: 385 KPIAIDTETTSLNPFK----------AELVGLGFCFGESLKDIVYIPIGHQNKEGDLIKI 434

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                     +   L++   + +      N+ ++R +L     + +     I TL+    
Sbjct: 435 NQINQLKIEEVIFALQDWFSSNENHKTLQNAKYDRLILLRH-GIILN-GVVIDTLLADYI 492

Query: 103 NGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                  +L  +                      K ++   +  + +       +    Y
Sbjct: 493 FDATLKHSLDEIAYR---------------EFGFKPKSFSDVVKKGEDFSYVDIKSASMY 537

Query: 161 CKGDVTVTREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTLN 208
           C  DV +TR++                      EQ L  +   I   G  +D      L+
Sbjct: 538 CGMDVYLTRKLAIIYINRLKETSTKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLS 597

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVL 263
             +  +   +++E+ ++      +    ++L   LF +  L  +    T+   +T   VL
Sbjct: 598 LELTKKLNTIEKEVYNIAGS-EFNLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVL 656

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGC 322
              +   P    +  +R   S+     ++ L + +  + GR+         + TGR S  
Sbjct: 657 EKLESDHPIVKMIIEHR-TISKLLNTYVDALPKLIEKETGRVHTDFNQAV-TATGRLSSS 714

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P  +                           S  +R   +  +  KL+ AD +
Sbjct: 715 NPNLQNIPVRTE-------------------------FSRRIRKAFLPQKDWKLLSADYS 749

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+L  ++GE+    A+   ED++  T    F      +  D+R IGK +   + Y 
Sbjct: 750 QIELRILTHLSGEEVLKNAYLKNEDVHSLTAKLLF--EKDAIDADERRIGKTINFGVIYG 807

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
            GA   Q+ A +TG++L         +   E +    NF  + +         +  +G  
Sbjct: 808 MGA---QRFARSTGVSL--IEAKYFLSKFKERYPAVFNFLEYQERLALSQGFVETLLGR- 861

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                + +   +                                                
Sbjct: 862 -----RRYFHFNKN---------------------------------------------- 870

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             GR L             TT R+   E           +Q  S DI+   M+    A  
Sbjct: 871 GLGRLLGTP----PNEIDLTTARRAGMEAQQLRAAANAPIQGSSADIIKLAMIQLHSALR 926

Query: 621 ----GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                  I+L VHDE+V E  P   E    ++ + M +       +PL  E      + 
Sbjct: 927 ETGLAAKILLQVHDELVLEVNPKDLEETKLLVKNTMENAVK--LSVPLIVETGVGVNWM 983


>gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
 gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a]
          Length = 908

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 98/699 (14%), Positives = 205/699 (29%), Gaps = 160/699 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LK 58
             + ID ET S    T            +I  +  F +             +      + 
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 59  EALEN---TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVG 113
           +   N   ++  I+  N  F+  +LK      IP   +  T++ A         +L  + 
Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E  K    K  + +++I              +N      +  +   Y   D  +T  +F 
Sbjct: 449 E--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLFN 493

Query: 174 RL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                       + +   E     +   + + G  +D        + +  E   ++ E+ 
Sbjct: 494 IFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIENEII 553

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRM 281
                   +    +++   LF +  L L +  +  +T  +VL S ++       +   R 
Sbjct: 554 KSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQ 612

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++      + L+E +N       T      + TGR +      QN+P       +   
Sbjct: 613 -IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK--- 668

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 669 ----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +                     ++   
Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDFR 752

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                          A E        +    ++   + ++ E  
Sbjct: 753 L------------------------------AKELGITKEEAKGFINSYFDSYPKIKEFI 782

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                  +                                    R    +++ +N     
Sbjct: 783 INQINFVKNA--------------------------GYSETILKRRRYIKEINSNNYLER 816

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
           +      R          +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 817 SA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIE 867

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 868 SPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSWG 905


>gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr]
 gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr]
          Length = 908

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 98/700 (14%), Positives = 203/700 (29%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MP 54
             + ID ET S    T            +I  +  F +                    + 
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKFYIEKHYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q        ++  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLF-KSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSCEDADITFRLF 492

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                              E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKELELIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +  +R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKHR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 R-IAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D+++ T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHIETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                   + T                                  R    +++ +N    
Sbjct: 782 IINQINFVKNT--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          + +Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIKEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905


>gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b]
 gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b]
          Length = 928

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 110/700 (15%), Positives = 206/700 (29%), Gaps = 152/700 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
                D ET S   L+            ++  AF             HD           
Sbjct: 349 DVFAFDLETDSLDTLS----------ANIVGLAFAVAPGEAAYLPVAHDYLDAPDQLDRA 398

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110
            +   LK  LE++    V  N  ++R VLK   ++++   ++  T++ +           
Sbjct: 399 AVLAQLKPLLEDSKAAKVGQNLKYDRGVLKNY-DIELNGIKY-DTMLESYCLNSVGGKHD 456

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A +  + K    +E                     ++ A    G Y   D  VT +
Sbjct: 457 MDSLAARWLNHKTVTFEE----------IAGKGKNQLTFNQIAIEQAGHYAAEDADVTLQ 506

Query: 171 IFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  ++ P               E  L  +   +   G  +D  +    +Q +     +L+
Sbjct: 507 LHLKMWPELEKEAGPKKVFTEIEMPLLKVISRVERNGVLIDQNILAKHSQELTTRLAELE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           Q+   L      +    ++L+T LF + G+     T     +T + VL+      P    
Sbjct: 567 QQAHDLAG-EPFNLSSTKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPLPKV 625

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   S+      + L   +N   GR+  +      + TGR S      QN+P  + 
Sbjct: 626 ILEHR-GLSKLKSTYTDKLPLMINPVTGRVHTSYHQAV-TATGRLSSTDPNLQNIPVRND 683

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA   K++V AD + IE R++A ++ 
Sbjct: 684 EGRR-------------------------IRQAFIAGPDKRIVAADYSQIELRIMAHLSQ 718

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  GED++  T +  F VA ++V+ +QR   K +   L Y   A        +
Sbjct: 719 DKGLLAAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSA-----FGLS 773

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             LN+         +   E +     +    +E        +   G              
Sbjct: 774 RQLNIGAGEAKKYMDLYFERYPGVLRYMEETREQAAAKGYVETLDGRRLWLPDITSSNAI 833

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +A       G A    KR  + +     ++ +  + +            
Sbjct: 834 RR-----KAAERAAINAPMQGTAADIIKRAMIAVDGWLLEQKDDKVKM------------ 876

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                     I+Q                    +V  +H     
Sbjct: 877 --------------------------IMQ-------------VHDE---LVFEIH----- 889

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   +A   +  LM  +      +PL  E    + +
Sbjct: 890 ---QDAVASASDKIRQLMEGSMK--LDVPLLVEVGTGENW 924


>gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont]
          Length = 929

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 108/699 (15%), Positives = 208/699 (29%), Gaps = 150/699 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
                D ET S   L+            ++  AF             HD           
Sbjct: 350 DVFAFDLETDSLDTLS----------ANIVGIAFAVAPGKAAYLPVAHDYLDAPPQLDRA 399

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110
            + + LK  LE++    V  N  ++R VLK   ++++   +   T++ +           
Sbjct: 400 AVLKQLKPLLEDSKAAKVGQNLKYDRGVLKNY-DIELNGIK-FDTMLESYCLNSVGGKHD 457

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
               A +  + K    +E                     ++ A      Y   D  VT +
Sbjct: 458 MDSLAARWLNHKTVTFEE----------IAGKGKYQLTFNQIALEQAAHYAAEDADVTLQ 507

Query: 171 IFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  ++ P   +E             L  +   +   G  +D  +    +Q +     +L+
Sbjct: 508 LHLQMWPKLEQEAGPKQVFEAIEMPLVTVISRVERNGVLIDQNILAKHSQELTTRLAELE 567

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQ 275
           Q+   L      +    ++L+T LF +  +     T     +T ++VL+      P    
Sbjct: 568 QKAHELAG-EPFNLSSTKQLQTILFEKQEIKPTKKTPGGAPSTSEKVLAELALDYPLPKV 626

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  +R   S+      + L + +N   GR+  +      + TGR S      QN+P  + 
Sbjct: 627 ILEHR-GLSKLKSTYTDKLPQMINPITGRVHTSYHQAV-TATGRLSSNDPNLQNIPVRNE 684

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA   K++V AD + IE R++A ++ 
Sbjct: 685 EGRR-------------------------IRQAFIAGADKRIVAADYSQIELRIMAHLSQ 719

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  GED++  T +  F VA ++V+ +QR   K +   L Y   A        +
Sbjct: 720 DKGLLDAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSA-----FGLS 774

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             LN+         +   E +     +    +    +    +   G              
Sbjct: 775 RQLNIGAGEAKKYMDLYFERYPGVLRYMEATRAQAADKGYVETLDGRRLWLPDINSSNAI 834

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            R         +A       G A    KR  + +      +N+  + +            
Sbjct: 835 RR-----KAAERAAINAPMQGTAADIIKRAMIAVDGWLLQQNSDEVKM------------ 877

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                     I+Q                    +V  +H     
Sbjct: 878 --------------------------IMQ-------------VHDE---LVFEIH----- 890

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              D     +  +  LM ++      +PL+ E      +
Sbjct: 891 --KDAVAGASQTIRELMENSMK--LDVPLQVEVGTGDNW 925


>gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
 gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515]
          Length = 976

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 111/712 (15%), Positives = 201/712 (28%), Gaps = 157/712 (22%)

Query: 2   ATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDPVMPQ--- 55
             +  +D ET S   L          D  ++   F   +    +      H     +   
Sbjct: 380 KEIVALDTETNSLNPL----------DAELVGIGFCLGEESNDLFYIPLGHQSQKDEMNQ 429

Query: 56  --------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
                    L+  +E+ +      N  F+R +      L++       TL+         
Sbjct: 430 LAIEDVFLNLRTWIESPEKEKTLQNCKFDRQIFYNH-GLNLS-GVTFDTLLADYILNN-- 485

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
                 E   LS     E         K  + +    +NK            YC  DV +
Sbjct: 486 -----QEKHGLSEICFRE------FGFKPPSFKETVGKNKDFSFVDINHASIYCGYDVFL 534

Query: 168 TREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           T +I K  +                 E  L  +   +   G  +D+   + L++ +    
Sbjct: 535 TYKIAKIFKERFRKEKKELTKLFKEIELPLEQVLSGMEMSGISIDITYLNELSRELKSTL 594

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLT 270
             +++ +  +      +    ++L   LF +  L  +    T+   +T   VL    +  
Sbjct: 595 ANIEENVFEI-AKQEFNLSSPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVEEH 653

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                +  +R   S+     ++ L   +N   GR+        A+ TGR S      QN+
Sbjct: 654 EIIPYLIKHR-TLSKLLSTYIDALPNLINKKTGRVHTNFNQA-ATATGRLSSSNPNLQNI 711

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                           S  +R   +  +G KL+ AD + IE R+L
Sbjct: 712 PVRTE-------------------------FSRRIRKAFLPEKGWKLLSADYSQIELRIL 746

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A +A E+  + AF   +D++  T    F      +  D+R +GK +   + Y  G K   
Sbjct: 747 AHLANEEILITAFHQNDDIHSLTARLIF--EKKDINSDERRVGKTINFGVIYGMGIKK-- 802

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
             A +TG++              + +     F    +         +   G   E     
Sbjct: 803 -FARSTGVSTTE--AKEFLIKYKKRYAKIFKFLELQERLALSKGYVETIFGRKREFKFD- 858

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                                     K     LI   P      
Sbjct: 859 ------------------------------------------KNGLGRLIGKEPY----- 871

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------D 623
             ++    +       Q  R            +Q  S DI+   M+   K          
Sbjct: 872 --EIDLQTARKAGMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKLLEMNIPVK 923

Query: 624 IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE++ E           L    M         +PL  +      + 
Sbjct: 924 MLLQVHDELLFEVKPDFLEITKQLVKETMEDCVK--LKVPLLVDIGVGNNWM 973


>gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
 gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04]
          Length = 908

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 202/700 (28%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MP 54
             + ID ET S    T            +I  +  F +                    + 
Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKFYIEKHYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q        ++  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLF-KSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSCEDADITFRLF 492

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                              E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKELELIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +  +R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKHR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 R-IAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++V T ++ F     ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHVETASKLFKTEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                   + T                                  R    +++ +N    
Sbjct: 782 IINQINFVKNT--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          + +Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIKEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905


>gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
 gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075]
          Length = 997

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 97/686 (14%), Positives = 196/686 (28%), Gaps = 153/686 (22%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDP------------------VMPQVLKEALENTDVTI 68
              +I  A              H                        VLK  LE+  V  
Sbjct: 422 QAELIGMAMATAPGRAAYIPFAHKSGNGDLLGGGTLENQIPLREALAVLKPLLEDKSVLK 481

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEALKLSSQKME 124
           +A N  ++  ++       I +  +  T++++            + A+ +          
Sbjct: 482 IAQNLKYDLVIMSRY---GIDVAPFDDTMLISYVLDAGTPHGHGMDALAD---------- 528

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179
             K L     + +        +    +        +   D  VT  ++  L+P       
Sbjct: 529 --KWLGHTPLQLKDVIGSGKNSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAATGL 586

Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E+ L  +   +  RG  VD  +   L+  +     +L++E+  L    + +  
Sbjct: 587 VSVYERLERPLVSVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLVGERI-NIG 645

Query: 235 CLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             ++L   LF   GL     T+    +T  ++L        +  +   +  + ++     
Sbjct: 646 SPKQLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTY 705

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            + L   ++ + +   T   L A+ TGR S      QN+P  +    +            
Sbjct: 706 TDALPGFIHPETKRVHTSYALAATTTGRLSSSDPNLQNIPVRTAEGRK------------ 753

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R+  IA +G +LV AD + IE RVLA +A      +AF  G D++ 
Sbjct: 754 -------------IRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHA 800

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  FNV    +  + R   K +   + Y   A           L++           
Sbjct: 801 ITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISA-----FGLANQLSIPREEASNYIKK 855

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             E +    ++    +    EH   +   G          R  +  +        +A   
Sbjct: 856 YFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYP--DIRSSNPSIRAFN---ERASIN 910

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
               G A    +R                                    +      L + 
Sbjct: 911 ARLQGTAADIIRR-----------------------------------AMVRMDEALEKA 935

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE-TPDTDEFNASMLYH 649
                          +R      ++               E++ E      E    ++ H
Sbjct: 936 KL------------SAR-----MLLQVHD-----------ELIFETVDAEVEATIPIVRH 967

Query: 650 LMTSN--PSWAKGLPLKAEGYESKRY 673
           +M +   P+ +  +PL  +   +  +
Sbjct: 968 VMENAAMPAVSMSVPLHVDARAANNW 993


>gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10]
 gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10]
          Length = 928

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 95/712 (13%), Positives = 192/712 (26%), Gaps = 164/712 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
            + +D ET +                 ++  +              H             
Sbjct: 338 QIAVDTETDALSSTASG----------LVGISLATAPGRACYIPLAHVDPQGTGDMFDTG 387

Query: 50  --DPVMP-----QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                +P     +VLK  LE+  V  +  N  ++  VL       I +  +  T++++  
Sbjct: 388 AAPEQIPMDQALKVLKPLLEDPAVLKIGQNFKYDLGVLSRY---GIDVAPYDDTMLISYV 444

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    + A+ E        +  G   I      +             +        
Sbjct: 445 MEAGLHGHGMDALAE--------LHLGHTCIPF----KEICGTGKNQITFDKVPLDKATL 492

Query: 160 YCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  +T  +++ L+P            + E+ +  +   +   G  VD    + L+ 
Sbjct: 493 YAAEDADITLRLWEILKPALVAKKMATVYETLERPMADVLSKMERVGIKVDPDQLNRLSS 552

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265
               +    + E          +    +++   LF E GL     T+    +T   VL  
Sbjct: 553 DFGQKMMAAEAEAHEAAGRD-FNVASPKQIGEILFGEMGLPGGKKTKTGAWSTDAAVLDQ 611

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                           + ++      ++L   +N D +   T   L A+ TGR S     
Sbjct: 612 LAAEGHALPVALLEYRQFAKLKSTYSDSLFAHINRDTKRVHTSFSLAATTTGRLSSTEPN 671

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  + +                            +R   IA  G  LV AD + +E
Sbjct: 672 LQNIPIRTEAGR-------------------------QIREVFIAEPGHVLVAADYSQVE 706

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A  +   +AF  G D++  T +  F V    +    R   K +   + Y   A
Sbjct: 707 LRLLAHIANVESLKQAFRDGTDIHAMTASEVFGVPIEGMDPMVRRKAKAINFGVIYGISA 766

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                      + +         ++  E++     +   M+    E    +   G     
Sbjct: 767 -----FGLANQIGVKRDEAKAFIDAYFEKFPGIRAYMDEMKAKAAETGYVETIFGRRAHF 821

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                R K+  +        +        G A    +R  + +                 
Sbjct: 822 P--GIRDKNPNMRMF---AERQAINAPIQGSAADVIRRAMIRMDDALN------------ 864

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                                                   + ++ A+ ++          
Sbjct: 865 ----------------------------------------AANLDAKMLLQVHDE----- 879

Query: 626 LTVHDEIVCETPDTDEFNASML-YHLMTSN--PSWAKGLPLKAEGYESKRYR 674
                 +V E P+    +   L   +M     P+    +PL  +    + + 
Sbjct: 880 ------LVFEVPENQAADLIALTAKVMGEACSPALELSVPLVVDAKAGRTWG 925


>gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2]
 gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2]
 gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2]
          Length = 949

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 98/694 (14%), Positives = 195/694 (28%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         D      +    
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN +   V  N  ++  VL+      +       T++            +  + E 
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVK-GPLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K       +    Y   D  VT ++   L
Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVL 533

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   I   G  +D       +     +  ++++E+  L
Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYEL 593

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +   P   ++  +R
Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P    + +E 
Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  EG     AD + IE R++A ++ ++  +
Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +  D++  T A+ + +    V  D R   K     + Y               +N+
Sbjct: 746 DAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +   E    +       +R       +++ V  
Sbjct: 801 DRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHR--KRFLPDINSRNAVVRG 858

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                                          
Sbjct: 859 Y---AERNAINAPIQGSAADII-------------------------------------- 877

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 ++     Y    TE  +QA         M+          L VHDE+    P  
Sbjct: 878 ------KVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVN 912

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +        ++   +PLKA+    K +
Sbjct: 913 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945


>gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
 gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22]
          Length = 896

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 218/702 (31%), Gaps = 167/702 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET S +D+          +  ++ F+F ++++        H        +  + 
Sbjct: 329 IVSFDTET-SDLDVK---------NAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEA 378

Query: 57  LKEALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            K A+   +    V  N  ++  ++K  F++++ +  +  T++L+         + VG  
Sbjct: 379 AKNAIIQLNRYKLVLQNFKYDYEIIKNNFDIELRL--YADTMILSWLLN---TNEKVGLD 433

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            ++         ++I+          +  + +           EY   D  +T  +FK+ 
Sbjct: 434 YQIDKYFD---HKMISF-------TDVVKKGENFSNVDIERACEYAAEDALMTLRLFKKQ 483

Query: 176 EPL-------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             +                E +  Y+   +   G  VDV L     ++ +    +L  ++
Sbjct: 484 LEIFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKI 543

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
              +     +    ++L   LF   GL     T+   +T + VL+           +   
Sbjct: 544 YQTSG-AEFNINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQY 602

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R  A +     +  L+E  +  D     T      + TGR S      QN+P  S S+  
Sbjct: 603 R-EAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTGTATGRLSSKNPNLQNIPTKSDSN-- 659

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   I  +G KLV  D + IE R+LA  + ++  
Sbjct: 660 -----------------------IQIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKAL 696

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AFE   D++  T  + F     +  K++R I K +   L Y  G+             
Sbjct: 697 VEAFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGS------------- 740

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                           +            ++   ++ +    V 
Sbjct: 741 -------------------------------KKLGETLGIPSKEAKQYIDSYFEAFKSVK 769

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +    +       I      +  ++R                           D  +  +
Sbjct: 770 DYLKSIEDFAN--INGYVKTLLNRKR-------------------------LFDFNSANA 802

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIV 633
            +            Y  +    + Q  + D++   M+N            ++L +HDE+V
Sbjct: 803 MMK---------AAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELV 853

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            E  D      +  + ++M +   +   +PLK        ++
Sbjct: 854 FEVKDEFVEEITFSIKNIMENI--YKLNVPLKVSLSVGSSWK 893


>gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1]
 gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1]
          Length = 908

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 202/700 (28%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
               ID ET S    T            +I  +  F +             +        
Sbjct: 341 KYTSIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNLFES-NPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSSEDADITFRLF 492

Query: 173 KRL----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                        + +   E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S ++       +   R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFINSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                                                        R    +++ +N    
Sbjct: 782 IINQINFVRNA--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 867 ESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 905


>gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
 gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483]
          Length = 949

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 98/694 (14%), Positives = 195/694 (28%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         D      +    
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDKALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN +   V  N  ++  VL+      +       T++            +  + E 
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVK-GPLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K       +    Y   D  VT ++   L
Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVL 533

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   I   G  +D       +     +  ++++E+  L
Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYEL 593

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +   P   ++  +R
Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P    + +E 
Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  EG     AD + IE R++A ++ ++  +
Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +  D++  T A+ + +    V  D R   K     + Y               +N+
Sbjct: 746 DAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +   E    +       +R       +++ V  
Sbjct: 801 DRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHR--KRFLPDINSRNAVVRG 858

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                                          
Sbjct: 859 Y---AERNAINAPIQGSAADII-------------------------------------- 877

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 ++     Y    TE  +QA         M+          L VHDE+    P  
Sbjct: 878 ------KVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVN 912

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +        ++   +PLKA+    K +
Sbjct: 913 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945


>gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4]
 gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4]
          Length = 949

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 194/694 (27%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         D      +    
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN +   V  N  ++  VL+      +       T++            +  + E 
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVK-GPLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K       +    Y   D  VT ++   L
Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVL 533

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   I   G  +D       +     +  ++++E+  L
Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYEL 593

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +   P   ++  +R
Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P    + +E 
Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  EG     AD + IE R++A ++ ++  +
Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +  D++  T A+ + +    V  D R   K     + Y               +N+
Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +   E    +       +R       +++ V  
Sbjct: 801 DRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHR--KRFLPDINSRNAVVRG 858

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                                          
Sbjct: 859 Y---AERNAINAPIQGSAADII-------------------------------------- 877

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 ++     Y     E  +QA         M+          L VHDE+    P  
Sbjct: 878 ------KVAMARIYQRFQAEG-IQA------K--MI----------LQVHDELNFSVPVN 912

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +        ++   +PLKA+    K +
Sbjct: 913 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945


>gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018]
 gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018]
          Length = 896

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 218/702 (31%), Gaps = 167/702 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET S +D+          +  ++ F+F ++++        H        +  + 
Sbjct: 329 IVSFDTET-SDLDVK---------NAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEA 378

Query: 57  LKEALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            K A+   +    V  N  ++  ++K  F++++ +  +  T++L+         + VG  
Sbjct: 379 AKNAIIQLNRYKLVLQNFKYDYEIIKNNFDIELRL--YADTMILSWLLN---TNEKVGLD 433

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            ++         ++I+          +  + +           EY   D  +T  +FK+ 
Sbjct: 434 YQIDKYFD---HKMISF-------TDVVKKGENFSNVDIERACEYAAEDALMTLRLFKKQ 483

Query: 176 EPL-------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             +                E +  Y+   +   G  VDV L     ++ +    +L  ++
Sbjct: 484 LEIFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKI 543

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
              +     +    ++L   LF   GL     T+   +T + VL+           +   
Sbjct: 544 YQTSGV-EFNINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQY 602

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R  A +     +  L+E  +  D     T      + TGR S      QN+P  S S   
Sbjct: 603 R-EAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTGTATGRLSSKNPNLQNIPTKSDS--- 658

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                 +  +R   I  +G KLV  D + IE R+LA  + ++  
Sbjct: 659 ----------------------TIQIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKAL 696

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AFE   D++  T  + F     +  K++R I K +   L Y  G+             
Sbjct: 697 VEAFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGS------------- 740

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                           +            ++   ++ +    V 
Sbjct: 741 -------------------------------KKLGETLGIPSKEAKQYIDSYFEAFKSVK 769

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +    +       I      +  ++R                           D  +  +
Sbjct: 770 DYLKSIEDFAH--INGYVKTLLNRKR-------------------------LFDFNSANA 802

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIV 633
            +            Y  +    + Q  + D++   M+N            ++L +HDE+V
Sbjct: 803 MMK---------AAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELV 853

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            E  D      +  + ++M +   +   +PLK        ++
Sbjct: 854 FEVKDEFVEEITFSIKNIMENI--YKLNVPLKVSLSVGSSWK 893


>gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
 gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23]
          Length = 949

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 98/694 (14%), Positives = 195/694 (28%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         D      +    
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN +   V  N  ++  VL+      +       T++            +  + E 
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVK-GPLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K       +    Y   D  VT ++   L
Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVL 533

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   I   G  +D       +     +  ++++E+  L
Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYEL 593

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +   P   ++  +R
Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P    + +E 
Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  EG     AD + IE R++A ++ ++  +
Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +  D++  T A+ + +    V  D R   K     + Y               +N+
Sbjct: 746 DAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +   E    +       +R       +++ V  
Sbjct: 801 DRKEAKELIDGYFETYPGVKVYMDKSIQVAQEKGYVETIFHR--KRFLPDINSRNAVVRG 858

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                                          
Sbjct: 859 Y---AERNAINAPIQGSAADII-------------------------------------- 877

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 ++     Y    TE  +QA         M+          L VHDE+    P  
Sbjct: 878 ------KVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVN 912

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +        ++   +PLKA+    K +
Sbjct: 913 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945


>gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
 gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025]
          Length = 937

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 98/711 (13%), Positives = 187/711 (26%), Gaps = 168/711 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + ID ET S  ++             ++  +   +          H             
Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGSACYIPLGHRAGGGDLFGSLDL 400

Query: 51  --PVMPQVL-----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
               +P  L     K  LE+  +  +  N  ++  +        I +     T++++ + 
Sbjct: 401 VADQIPLDLALSMLKPVLEDDAILKIGQNMKYDAKIFARH---GIRVAPIDDTMLMSYAM 457

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + +       K    K L+                    R        Y
Sbjct: 458 HAGRHGHGMDELCDTY--LGHKPIAIKTLL----------GSGKSQITFDRVPVDQAVCY 505

Query: 161 CKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  +++  +P   +          E+ L  +   +   G  VD      ++  
Sbjct: 506 AAEDADVTLRLWRLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMSNA 565

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET----GLHLEDLTETTCQRVLSSN 266
              +   L+ E+  L  G   +    ++L   LF       G+  ++    T   VL   
Sbjct: 566 FAQKMAALEAEIHGLAGGP-FNVGSPKQLGEILFERMSLQGGVKGKNGAWGTGADVLEDL 624

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325
                       +  + S+      + L E ++ + GR+  +    GA+ TGR +     
Sbjct: 625 AAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPN 683

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +                              +R   +A +GK LV  D + IE
Sbjct: 684 LQNIPVRTEEGRR-------------------------IREAFVAPKGKLLVSVDYSQIE 718

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AF  G D++  T A  FNV    +    R   K +   + Y    
Sbjct: 719 LRILAHIADIPALKQAFREGHDIHAMTAAEMFNVPLEGMDPMVRRQAKAINFGVIYGISG 778

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                      L +         +   E +     +          H       G     
Sbjct: 779 -----FGLARNLRIPRADAQGFIDRYFERFPGIRAYMDETVAFAKAHGFVQTLFGR---- 829

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                R     ++                            P     +            
Sbjct: 830 -----RINTPEINA-------------------------KGPGAGFARRAAI-------- 851

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL-AEGMMNATKAGYDI 624
                     N     T    + R      K           D L A+ ++        +
Sbjct: 852 ----------NAPIQGTAADVIRRAMIRMPKAL---------DGLPAKMLLQVHDE---L 889

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
           +  V DE         +   + +  +M S   P+    +PL  +      +
Sbjct: 890 LFEV-DE------AAADPVIARVREVMESASEPAVKLSVPLTVDAGRGANW 933


>gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured Planctomycetales bacterium HF0500_02G17]
          Length = 987

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 106/719 (14%), Positives = 202/719 (28%), Gaps = 163/719 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQ 55
           + +D ET +   +             ++  +F  +                      +  
Sbjct: 379 IAVDTETTAIRPMR----------ADLVGLSFAVEPGSGWYVPVRSPEPETHLDEATVLG 428

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-------HRW--ICTLVLARSNG-- 104
            L+  LE+     + HN  ++  VL+    +++           W    +++ +      
Sbjct: 429 ALRPVLEDATKPKLGHNLKYDILVLRRA-GVELRGHVSTVGAGDWPGGDSMIASYLVDAS 487

Query: 105 -LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
               ++ A+  AL            L  R            + K            Y   
Sbjct: 488 RSSHSMDALAMAL------------LERRNIPISELIGTGKKQKTFDTVPLDRATPYAAE 535

Query: 164 DVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           D  VT ++ +RL P   +             L  +   +   G  VD          ++ 
Sbjct: 536 DADVTLQLCQRLLPELQEMELGALFGGLEMPLVDVLAELEWNGIRVDPDELDRQRGRIEG 595

Query: 214 ERTKLDQELESLT---YGLVSSSRCLEKLKTWLFLETG----------LHLEDLTETTCQ 260
               L  ++        G    +   ++L   LF +            +       +T  
Sbjct: 596 RVKDLRNQIADEAMGAVGREFDADSPKQLAGVLFNKPDAADPGLGLRVIKRGKTGPSTDA 655

Query: 261 RVLSSNKKL----TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASR 315
            VL    +     TP    +   R   ++     L  LVE ++    R+  +     A+ 
Sbjct: 656 EVLEKLSQDASVKTPIPDLILEYRQ-LTKLVNTYLVNLVEEIDPRTKRIHASFNQTVAA- 713

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  +    E                         +R   +A  G  
Sbjct: 714 TGRLSSSDPNLQNIPIRTELGRE-------------------------IRKAFVAEPGHL 748

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           LV AD + IE R+LA ++ +   ++AF  G+D++    A+  +V  A+V+++QR   K++
Sbjct: 749 LVAADYSQIELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQRNGAKMV 808

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y   A           L ++        +     +     F              
Sbjct: 809 NFGIVYGVTA-----FGLARRLGVSNSEAGEIIDGYKRRFAGITTFLEECIAQAHAQGYV 863

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           +  +           R ++ R         +    ++  G A    K   V L       
Sbjct: 864 ETMMKRRRPIPDIDSRDQNRR-----ALAERMAINSVVQGSAADLIKIAMVDLH------ 912

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                     R L                    R   +       I              
Sbjct: 913 ----------RRLS------------------PRAAAWREGAGPEI-------------- 930

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                G  ++L +HDE+V E P         ++   M +    A  +PL A+   S  +
Sbjct: 931 ----EGVRMLLQIHDELVFEAPKDRAEAVRDLIVARMEAAM--ALDVPLVADASVSGDW 983


>gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
 gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5]
          Length = 1003

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 97/693 (13%), Positives = 194/693 (27%), Gaps = 166/693 (23%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66
              +   A     +        H                       + + L   LE+  V
Sbjct: 427 QADICGIALALSPNEAAYIPLGHKKAGGGDDLFASGLADGQIEAAKVLETLTALLESEAV 486

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKM 123
                +  F   +L      +I +       +++ +     +   ++A+ E         
Sbjct: 487 LKTGFDIKFAAVLLAQH---NITLRTVDDVQLMSYALDAGRSSHDIEALAEQW------- 536

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
             G E+IA                   +       EY      V   ++   +     E+
Sbjct: 537 -LGHEMIA----HADIVGSGRNRISLDQVEIPRAAEYGAESADVIMRLWLVFKARLISER 591

Query: 184 ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                      L  +   +  RG  +D  +   L+        +L+ E+  +    + + 
Sbjct: 592 MNNVYESLERPLIDVLARMERRGIMIDRQVLARLSGEFAQSAARLEAEIREIAGEDI-NP 650

Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              ++L   +F + GL     T+    +T   +L    +      +   +  + S+    
Sbjct: 651 GSPKQLGDVMFGKMGLPGGQKTKTGAWSTTASILEDLAEAGHDFPRKILDWRQVSKLKST 710

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             + L   +    +   T   L A+ TGR S      QN+P  +    +           
Sbjct: 711 YTDALPTHLLPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK----------- 759

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R   IA++G KLV AD + IE R+LA +A      +AF+ G D++
Sbjct: 760 --------------IRRAFIAAKGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIH 805

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T +  F V    +  + R   K +                    G++           
Sbjct: 806 AMTASEMFGVPIKDMPGEVRRRAKAINF--------------GIIYGIS----------- 840

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                  A +            K + ++   +    +       
Sbjct: 841 -------------------AFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCR 881

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +   +G                             GR   Y D+  +     +      R
Sbjct: 882 E---HGYVTTL-----------------------FGRKCHYPDIKASNP---SLRAFNER 912

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEF- 642
                        Q  + DI+   M+         K    ++L VHDE+V E PD++   
Sbjct: 913 AAINARL------QGTAADIIRRAMIRMEDALTQKKLAARMLLQVHDELVFEVPDSEVDK 966

Query: 643 NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
              ++  +M     P+ A  +PL+ +   +  +
Sbjct: 967 TLPVIREVMEQAPFPATALSVPLRVDARAADNW 999


>gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275]
          Length = 931

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 110/700 (15%), Positives = 199/700 (28%), Gaps = 152/700 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  NR   ++      + L + ++       T      + TGR +      QN+P  + 
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPDMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 685

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR    A  G  +V AD + IE R++A ++G
Sbjct: 686 EGRR-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSG 720

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +    
Sbjct: 721 DKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLA 775

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++  +     +     +     + +  +E        +   G          R K+
Sbjct: 776 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNKN 833

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           +          +A       G A    KR  + +                 R LV  D+ 
Sbjct: 834 ANARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLVSDDLK 874

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           +                         I+Q                    +VL        
Sbjct: 875 SKL-----------------------IMQ-------------VHDE---LVL-------- 887

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E  +T+       L  +M         +PL AE    + +
Sbjct: 888 EVVETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 927


>gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
 gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271]
          Length = 950

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 115/693 (16%), Positives = 204/693 (29%), Gaps = 150/693 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEA 60
            +D ET S              +  ++  +            C  +         +LK  
Sbjct: 380 ALDTETTSLN----------TFEAELVGISISVKPQEAVFIYCSPEGLKPEKALSILKPV 429

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKL 118
           LEN  +     N  ++  VLK    + +       T++ +          L  + +    
Sbjct: 430 LENPAIEKWGQNLKYDILVLKNY-GIQLAPTG-FDTMLASYVINPEETHNLDDLAQRH-- 485

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L  R            +  P  +        Y   D  +   +   LE  
Sbjct: 486 ----------LQYRTTTYSELCGTGKKAVPLRQVPLEALKNYACQDADIALRLQNTLEKQ 535

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV-------- 230
               QEL +L + I      V VA+ +    +      K   ++ SLT  L         
Sbjct: 536 LKDNQELEWLCRNIEFPLVNVLVAMEYRGISLDTKHLEKTATKVASLTADLKERIYATAG 595

Query: 231 --SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF   GL  +  T+   +T  +VL     + P A  +   R    +
Sbjct: 596 STFNIDSPKQLGEILFTRLGLPAKKTTKTGYSTNVQVLEELAMIHPIAQDILEYR-SLQK 654

Query: 286 SAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                +  L + +N   G+L  +      + TGR S      QN+P  +   +E      
Sbjct: 655 LRSTYIEALPKILNPATGKLHTSFNQHI-TATGRLSSSNPNLQNIPIRTELGKE------ 707

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +R   IAS     L+ AD + IE R+ A ++G++  ++AF 
Sbjct: 708 -------------------IRKAFIASTNRNFLLSADYSQIELRIAAELSGDKKLIEAFR 748

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
             ED++  T    F+     VT D R   K +   + Y       Q    +  LN++   
Sbjct: 749 NQEDIHAATAKAIFDT--EDVTSDMRRKAKEVNFGVLYG-----IQPYGLSMRLNISQKE 801

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                ++   ++         +     E+      +G    R   A   ++  + +    
Sbjct: 802 AKAIIDTYKSKYPGLFEALDALVRQAAENGFVTTLLGR--RRYIAALNSRNGNIRK---A 856

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +A   T   G A    K                                         
Sbjct: 857 AERAAMNTPVQGTAADIIK----------------------------------------- 875

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
                    Y   L EN +Q               K    ++L VHDE+V ET + +   
Sbjct: 876 ---------YAMCLIENTMQ-------------EHKMHSTMLLQVHDELVFETNEEEHEK 913

Query: 644 AS-MLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
              M+   M         K +P++ +    K +
Sbjct: 914 LETMVVASMKEAALVCGLKQVPVEVDTGIGKNW 946


>gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399]
          Length = 931

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 113/701 (16%), Positives = 204/701 (29%), Gaps = 154/701 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +       +++ +          L
Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDSMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             +             G+ L       E+      +       A     EY   D     
Sbjct: 460 DELS------------GRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +   
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 832

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R LV  D+
Sbjct: 833 NANARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLVSDDL 873

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            +                         I+Q                    +VL       
Sbjct: 874 KSKL-----------------------IMQ-------------VHDE---LVL------- 887

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  +T+       L  +M         +PL AE    + +
Sbjct: 888 -EVVETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 927


>gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
 gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens
           NRL30031/H210]
          Length = 937

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 193/701 (27%), Gaps = 148/701 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSQTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  NR   ++      + L E ++       T      + TGR +      QN+P  + 
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 685

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR    A  G  +V AD + IE R++A ++G
Sbjct: 686 EGRR-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSG 720

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +    
Sbjct: 721 DKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLA 775

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++  +     +     +     + +  +E        +   G            K+
Sbjct: 776 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIHNKN 833

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           +          +A       G A    KR  + +     +                    
Sbjct: 834 ANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECE------------------ 872

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIV 633
                                            D L   ++         +VL       
Sbjct: 873 ---------ASLW--------------------DCLKSKLIMQVHDE---LVL------- 893

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P+ +       L  +M         +PL AE      +
Sbjct: 894 -EVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGAGMNW 933


>gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815]
 gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815]
          Length = 915

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 108/701 (15%), Positives = 194/701 (27%), Gaps = 162/701 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   +             ++  +   +          H             + 
Sbjct: 341 SFDTETTSLDPMV----------AQIVGISIAVEAGKAAYIPVAHHGPDAPVQLPRDEVL 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ D   V  +  ++  VL     + +       TL+ +              
Sbjct: 391 AKLKPWLESRDKKKVGQHLKYDEQVLANY-GITMDGIE-HDTLLQSYVLESHRPHDMDNL 448

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E               A     EY   D  +T  + + 
Sbjct: 449 ALRHLGLKTI----------KYEDVAGKGASQIGFDEVALDKASEYAAEDADITLRLHQT 498

Query: 175 LEPL------SSKEQELWYL-----DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P                +      + +   G  +DV      +  +     +L+++  
Sbjct: 499 LYPQIASEVPLDHVYRNIEVPTSRVLRKMERNGVLIDVEKLRVQSNEIATRLVELERQAY 558

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 559 DLAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKTILEH 617

Query: 280 RMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N S GR+        A  TGR +      QN+P  +     
Sbjct: 618 R-GLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTGEGRR 675

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA  G KLV AD + IE R++A ++G++  
Sbjct: 676 -------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDEAL 710

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF+ GED++  T +  F+V P +V+ DQR I KV+   L Y             + L 
Sbjct: 711 LRAFKQGEDIHRATASEVFSVTPLEVSNDQRRIAKVINFGLIYGMS-----SFGLASNLG 765

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +   A  +  +     +     +    + +       +   G          R     ++
Sbjct: 766 ITRDAAKLYIDRYFARYPGVAAYMENTRTSAKMKGYVETVFGR---------RLWLPEIN 816

Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    K   + +    ++                    
Sbjct: 817 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQKWIEESG------------------ 858

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIV 633
                                              +   M+         +VL V     
Sbjct: 859 -----------------------------------IRTRMIMQVHDE---LVLEV----- 875

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              PD +  +    L  LM         +PL AE      +
Sbjct: 876 ---PDDELSDVRKRLPELMCGVAQ--LKVPLVAEVGAGANW 911


>gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771]
          Length = 564

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 97/642 (15%), Positives = 185/642 (28%), Gaps = 132/642 (20%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108
                LK  LE+  V  VA N  ++  +LK      I    +  T++++           
Sbjct: 31  DALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAHG 87

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  + E           G   I      +        N             Y   D  VT
Sbjct: 88  MDPLSEKF--------LGHTPIPY----KDVAGSGKANVTFDLVDIDRATHYAAEDADVT 135

Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             ++  L+P              E+ L  +   +  RG  VD  +   L+  +     +L
Sbjct: 136 LRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGVTVDRQILSRLSGELAQGAARL 195

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAI 274
           + E+ +L      +    ++L   LF + GL     T+    +T   VL        +  
Sbjct: 196 EDEIYTLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELP 254

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +   +  + ++      + L   ++ + +   T   L ++ TGR S      QN+P  + 
Sbjct: 255 RKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTA 314

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
              +                         +R+  I++ G KL+ AD + IE RVLA +A 
Sbjct: 315 EGRK-------------------------IRTAFISTPGHKLISADYSQIELRVLAHVAE 349

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                KAFE G D++  T +  F V    +  + R   K +   + Y   A         
Sbjct: 350 IPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISA-----FGLA 404

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L++             E +    ++    +    +    +   G          R  +
Sbjct: 405 NQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYP--EIRSSN 462

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V        +A       G A    +R  + +                          
Sbjct: 463 PSVRAFN---ERAAINAPIQGSAADVIRRAMIKMEPALAQAGL----------------- 502

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                         R                        ++              DE++ 
Sbjct: 503 ------------AERVRM---------------------LLQVH-----------DELIF 518

Query: 635 ETPDTDEF-NASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
           E  D D      ++  +M +   P+    +PL+ +   +  +
Sbjct: 519 EVEDEDVDKAMPIIVSVMENATMPALEMRVPLRVDARAATNW 560


>gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 999

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 102/716 (14%), Positives = 201/716 (28%), Gaps = 167/716 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---------VELWDCVHDP--- 51
           +  D ET S            A    ++ F+    D+                 H     
Sbjct: 401 VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYIPLAHKNGVG 450

Query: 52  ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                               LK  LE+  V  VA N  ++  +++      I    +  T
Sbjct: 451 DLLGGGLADNQISMRDALPRLKSLLEDAAVLKVAQNLKYDYLLMQRY---GIETRSFDDT 507

Query: 97  LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           ++++           +  + E           G   I      +        N       
Sbjct: 508 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGKANVTFDLVD 555

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203
                 Y   D  VT  ++  L+P              E+ L  +   +  RG  VD  +
Sbjct: 556 IDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 615

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259
              L+  +     +L+ E+  L      +    ++L   LF + GL     T+    +T 
Sbjct: 616 LSRLSGELAQGAARLEDEIYVLAG-ERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTS 674

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            +VL        +  +   +  + ++      + L   ++++ +   T   L ++ TGR 
Sbjct: 675 AQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHAETKRVHTSYSLASTTTGRL 734

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  +    +                         +R+  I++ G KL+ A
Sbjct: 735 SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPGHKLISA 769

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +   +
Sbjct: 770 DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 829

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y   A           L++             E +    ++    +    +    +   
Sbjct: 830 IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 884

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
           G          R  +  V        +A       G A    +R  + +     +     
Sbjct: 885 GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIRMEPALAEVGL-- 937

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                           +R  +                                 ++    
Sbjct: 938 ---------------GDRVRM---------------------------------LLQVHD 949

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
               ++  V DE         E    ++  +M +   P+    +PL+ +   +  +
Sbjct: 950 E---LIFEVEDE-------DVEKAMPIIVSVMENATMPALEMRVPLRVDARAASNW 995


>gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
 gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I
 gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl]
 gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl]
          Length = 942

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 114/704 (16%), Positives = 206/704 (29%), Gaps = 167/704 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVL 57
             D E  S   +             ++  +       V      H          +   L
Sbjct: 362 AFDTECTSLQPVAS----------DLVGISIAIAPDTVCYIPVGHQSETQVPCGEVVTAL 411

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEAL 116
                N      AHN+ F+  VL       I +      T++ A   G    LK +    
Sbjct: 412 APFFANPQQPKFAHNAKFDMEVLA---GAGIKVSGLAFDTMIAAAMLGKRQGLKDLAFYE 468

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
               +     ++LI             ++              Y   D   T  + +RL+
Sbjct: 469 LKLPEPPTTIEDLI----------GRGNKQISFAEVPVEQAAPYAAADALYTLRLTERLQ 518

Query: 177 PLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                           E  L  +   +   G  +D      L +        L + +   
Sbjct: 519 RQLEAEPALHDLYYRVELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQ 578

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL--------EDLTETTCQRVLSSNKKLTPQAIQVF 277
             G   +    ++L   LF   G+          +    +    VL    +L P A  + 
Sbjct: 579 AGGP-FNINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLEELSQLYPIAADIL 637

Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             R   ++     ++ L + +N   GR+  +   LGA+ TGR S      QN+P  +   
Sbjct: 638 TYRQ-LTKLKSTYIDALPDLVNPRTGRIHTSYNQLGAA-TGRLSSNNPNLQNIPVRTEEG 695

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            E                         +R   +A  G + V AD + IE RVLA M+G++
Sbjct: 696 RE-------------------------IRRAFVAEPGWRFVAADYSQIELRVLAHMSGDE 730

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF+ G D++  T +R F V P  V K+QR + K +   +                G
Sbjct: 731 NLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVI--------------YG 776

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++    A  +                                      ++      +   
Sbjct: 777 ISAFGLAQRLGIE------------------------------RDLARQLIDNLFAQFPG 806

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +      + Q  E   ++G                        +    GR  V  D+  +
Sbjct: 807 IRRY---IDQTLEFGRQHGY-----------------------VQTLFGRRRVMEDLRAS 840

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
            +      R+               +Q  + D++   M+N  +A         ++L VHD
Sbjct: 841 GARRAAAERE----------AINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHD 890

Query: 631 EIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E++ E P+ +    A +L  +M+S       +PL         +
Sbjct: 891 ELIAEAPEDEVEPAARLLRDVMSS-VYRDLVVPLSVNLEVGPNW 933


>gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
 gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A]
          Length = 986

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 111/719 (15%), Positives = 211/719 (29%), Gaps = 166/719 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD--------- 50
             + ID ET S                 ++   F F +    +      H          
Sbjct: 385 KPIAIDTETTSLNPFK----------AELVGLGFCFGESLKDIVYIPIGHKNKEDDLIEI 434

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                     +   L++   + +      N+ ++R +L     + +     + TL+    
Sbjct: 435 NQINQLKIEEVIFALQDWFSSNENPKTLQNAKYDRLILLRH-GIILN-GVVMDTLLADYI 492

Query: 103 NGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                  +L  +                      K ++   +  + +       +    Y
Sbjct: 493 CDATLKHSLDEIAYR---------------EFGFKPKSFSDIVKKGEDFSYVDIKSASMY 537

Query: 161 CKGDVTVTREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTLN 208
           C  DV +TR++                      EQ L  +   I   G  +D      L+
Sbjct: 538 CGMDVYLTRKLAIIYINRLKETSIKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLS 597

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVL 263
             +      +++E+ ++      +    ++L   LF +  L  +    T+   +T   VL
Sbjct: 598 LELTKRLNTIEKEVYNIAGS-EFNLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVL 656

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGC 322
              +   P    +  +R   S+     ++ L + +  + GR+         + TGR S  
Sbjct: 657 EKLESDHPIVKIIIEHR-TISKLLNTYVDALPKLIEKETGRVHTDFNQAV-TATGRLSSS 714

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P  +                           S  +R   +  +  KL+ AD +
Sbjct: 715 NPNLQNIPVRTE-------------------------FSRRIRKAFLPQKDWKLLSADYS 749

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+L  ++GE+    A+   ED++  T    F      +  D+R IGK +   + Y 
Sbjct: 750 QIELRILTHLSGEEVLKNAYLKNEDVHSLTAKILF--EKDAIDADERRIGKTINFGVIYG 807

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
            GA   Q+ A +TG++L         +   E +     F  + +         +  +G  
Sbjct: 808 MGA---QRFARSTGVSL--IEAKYFLSKFKERYPAVFKFLEYQERLALSQGFVETLLGR- 861

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                + +   +                                                
Sbjct: 862 -----RRYFHFNKN---------------------------------------------- 870

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             GR L             TT R+   E           +Q  S DI+   M+    A  
Sbjct: 871 GLGRLLGTP----PNEIDLTTARRAGMEAQQLRAAANAPIQGSSADIIKLAMIQLHSALR 926

Query: 621 ----GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                  I+L VHDE+V E  P   E    ++ + M +       +PL  E      + 
Sbjct: 927 ETGLAAKILLQVHDELVLEVNPKDLEETKLLVQNTMENAVK--LSVPLIVETGVGVNWM 983


>gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62]
 gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62]
          Length = 930

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 107/700 (15%), Positives = 195/700 (27%), Gaps = 153/700 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAVPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIA-GDAMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             +             G+ L       E+      +       A     EY   D     
Sbjct: 460 DELS------------GRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +  RL               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  NR   ++      + L E ++       T      + TGR +      QN+P  + 
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 685

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR    A  G  +V AD + IE R++A ++G
Sbjct: 686 EGRR-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSG 720

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF++GED++  T A  F  AP  V+ +QR   K +   L Y  G     +    
Sbjct: 721 DKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLA 775

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++  +     +     +     + +  +E        +   G          R K+
Sbjct: 776 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNKN 833

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           +          +A       G A    KR  + +     D                    
Sbjct: 834 ANARA---GAERAAINAPMQGTASDLIKRAMINVRNWLSDGI------------------ 872

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                                  M         +VL    E+V 
Sbjct: 873 -----------------------------GS-----KLVM-QVHDE---LVL----EVV- 889

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +T+       L  +M         +PL AE    + +
Sbjct: 890 ---ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
 gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163]
          Length = 929

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 106/700 (15%), Positives = 198/700 (28%), Gaps = 153/700 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
                D ET     LT            +I  +F             HD           
Sbjct: 351 DVFAFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPDQLDRA 400

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            +  +LK  LE+  +  +  N  F++ V++   ++D+       T++ +           
Sbjct: 401 TVLALLKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIA-FDTMLESYVLDSVAGRHD 458

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + ++ E              L  +    E            ++ A    G Y   D  VT
Sbjct: 459 MDSLAERY------------LKHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVT 506

Query: 169 REIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             + + L                    L  +   I   G  +D A+    ++ +     +
Sbjct: 507 LHLHQTLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAE 566

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQA 273
           L+ +   L      +    ++L+  L+ +  L           +T + VL+      P  
Sbjct: 567 LEIQAYELAG-EEFNLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   R   ++      + L   +N   +   T      + TGR S      QN+P  +
Sbjct: 626 KLILEYR-GLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIPVRN 684

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   IA +G  +V AD + IE R++A ++
Sbjct: 685 DEGRR-------------------------IRQAFIAPKGYSIVAADYSQIELRIMAHLS 719

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  L AF  G D++  T +  F +A  +VT +QR   K +   L Y   A        
Sbjct: 720 GDEGLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSA-----FGL 774

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
           +  LN+         N   E +   +++    ++   EH       G          R  
Sbjct: 775 SRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNA 834

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
            +R         +A       G A    K+  + +    +                    
Sbjct: 835 MAR-----KGAERAAINAPMQGTAADIIKKAMIAIDDWLQKD------------------ 871

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                 K+                M         +V  + D IV
Sbjct: 872 --------------------APKV-------------KMIM-QVHDE---LVFEIDDSIV 894

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  E + S +  LM         +PL+ +      +
Sbjct: 895 -------EESISKIKVLMEGCMQ--LNVPLQVDIGTGMNW 925


>gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22]
 gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A]
 gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22]
          Length = 949

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 94/694 (13%), Positives = 194/694 (27%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         D      + +  
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN +   V  N  ++  VL+    +         T++            +  + E 
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNYGAVV--KGPLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K       +    Y   D  +T ++   L
Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVL 533

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   I   G  +D       +     +  ++++E+  L
Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYEL 593

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +   P   ++  +R
Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L   +N   GR+  +      + TGR S      QN+P    + +E 
Sbjct: 653 -GLKKLLGTYIDALPLLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  EG     AD + IE R++A ++ ++  +
Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +  D++  T A+ + +    V  D R   K     + Y               +N+
Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +   E    +                       
Sbjct: 801 DRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIF-------------------- 840

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                 ++R +P +  +           +        +      
Sbjct: 841 ---------------------HRKRFLPDINSRNAVVRGYAERNA--------INAPIQG 871

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 ++     Y     E  +QA         M+          L VHDE+    P  
Sbjct: 872 SAADIIKVAMARIYQRFQAEG-IQA------K--MI----------LQVHDELNFSVPVN 912

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +        ++   +PLKA+    K +
Sbjct: 913 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945


>gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090]
 gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2]
 gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
 gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090]
 gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291]
 gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02]
 gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19]
 gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11]
 gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18]
 gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1]
 gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332]
 gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679]
 gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2]
          Length = 930

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 107/700 (15%), Positives = 195/700 (27%), Gaps = 153/700 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIA-GDAMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             +             G+ L       E+      +       A     EY   D     
Sbjct: 460 DELS------------GRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +  RL               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  NR   ++      + L E ++       T      + TGR +      QN+P  + 
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 685

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR    A  G  +V AD + IE R++A ++G
Sbjct: 686 EGRR-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSG 720

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF++GED++  T A  F  AP  V+ +QR   K +   L Y  G     +    
Sbjct: 721 DKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLA 775

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++  +     +     +     + +  +E        +   G          R K+
Sbjct: 776 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNKN 833

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           +          +A       G A    KR  + +     D                    
Sbjct: 834 ANARA---GAERAAINAPMQGTASDLIKRAMINVRNWLSDGI------------------ 872

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                                  M         +VL    E+V 
Sbjct: 873 -----------------------------GS-----KLVM-QVHDE---LVL----EVV- 889

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +T+       L  +M         +PL AE    + +
Sbjct: 890 ---ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
 gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565]
          Length = 930

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 93/694 (13%), Positives = 193/694 (27%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         +      +    
Sbjct: 358 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPANQEETLKIVNEF 407

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN     V  N  ++  VL+    +++       T++            +  + E 
Sbjct: 408 RPVFENESSLKVGQNIKYDMIVLQNY-GVEVK-GPLFDTMIAHYVLQPELRHGMDYLAEI 465

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K     A +    Y   D  VT ++   L
Sbjct: 466 YLH--YQTIHIDELIG---------PKGKNQKNMRDLAPKDVYRYACEDADVTLKLKNVL 514

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   I   G  +D       +     +  ++++E+  L
Sbjct: 515 EKELKENGTERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTEQMERIEKEIYDL 574

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +   P   ++  +R
Sbjct: 575 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 633

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P    + +E 
Sbjct: 634 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 690

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  EG     AD + IE R++A ++ ++  +
Sbjct: 691 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 726

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +  D++  T A+ + +   +V  D R   K     + Y               +N+
Sbjct: 727 DAFLSNHDIHAATAAKIYKIGLKEVDSDMRRKAKTANFGIIYGISV-----FGLAERMNV 781

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    +   E +   + +         E    +                       
Sbjct: 782 ERKEAKELIDGYFETYPGVKAYMDQSIRVAQEKGYVETIF-------------------- 821

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                 ++R +P +  +           +        +      
Sbjct: 822 ---------------------HRKRFLPDINSRNAVVRGYAERNA--------INAPIQG 852

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 ++     Y     E          +   M+          L VHDE+    P  
Sbjct: 853 SAADIIKVAMARIYQRFRAEG---------IKTKMI----------LQVHDELNFSVPID 893

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +        ++   +PLKA+    K +
Sbjct: 894 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 926


>gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14]
 gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14]
          Length = 937

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 106/701 (15%), Positives = 195/701 (27%), Gaps = 148/701 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  L N  +  +  N  +++ V      + +        ++ +          L
Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  NR   ++      + L E ++       T      + TGR +      QN+P  + 
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 685

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR    A +G  +V AD + IE R++A ++G
Sbjct: 686 EGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLSG 720

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +    
Sbjct: 721 DKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLA 775

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++  +     +     +     + +  +E        +   G          R K+
Sbjct: 776 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNKN 833

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           +          +A       G A    KR  + +     +                    
Sbjct: 834 ANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECE------------------ 872

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIV 633
                                            D L   ++         +VL       
Sbjct: 873 ---------ASLW--------------------DCLKSKLIMQVHDE---LVL------- 893

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P+ +       L  +M         +PL AE    + +
Sbjct: 894 -EVPEAELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 933


>gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02]
 gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18]
 gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140]
 gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19]
 gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11]
 gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18]
 gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1]
 gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1]
 gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332]
 gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679]
 gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035]
 gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945]
 gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 908

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 107/700 (15%), Positives = 195/700 (27%), Gaps = 153/700 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 330 DTIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 379

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 380 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIA-GDAMLASYIIESHLGHGL 437

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             +             G+ L       E+      +       A     EY   D     
Sbjct: 438 DELS------------GRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFAL 485

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +  RL               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 486 RLEARLRAQMDDKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQ 545

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 546 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 604

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  NR   ++      + L E ++       T      + TGR +      QN+P  + 
Sbjct: 605 IILQNR-SLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTA 663

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR    A  G  +V AD + IE R++A ++G
Sbjct: 664 EGRR-------------------------VRRAFTAPPGSVIVSADYSQIELRIMAHLSG 698

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF++GED++  T A  F  AP  V+ +QR   K +   L Y  G     +    
Sbjct: 699 DKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLA 753

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++  +     +     +     + +  +E        +   G          R K+
Sbjct: 754 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNKN 811

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           +          +A       G A    KR  + +     D                    
Sbjct: 812 ANARA---GAERAAINAPMQGTASDLIKRAMINVRNWLSDGI------------------ 850

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                                  M         +VL    E+V 
Sbjct: 851 -----------------------------GS-----KLVM-QVHDE---LVL----EVV- 867

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +T+       L  +M         +PL AE    + +
Sbjct: 868 ---ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 904


>gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1016

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 104/716 (14%), Positives = 199/716 (27%), Gaps = 167/716 (23%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---------VELWDCVHDP--- 51
            +  D ET S            A    ++ F+    D+                VH     
Sbjct: 418  VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVG 467

Query: 52   ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                                LK  LE+  V  VA N  ++  +LK      I    +  T
Sbjct: 468  DLLGGGLAENQIPMRDALPRLKALLEDEAVLKVAQNLKYDYLLLKRY---GIETRSFDDT 524

Query: 97   LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            ++++           +  + E           G   I      +        N       
Sbjct: 525  MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGKANVTFDLVD 572

Query: 154  WRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVAL 203
                  Y   D  VT  ++  L+P              E+ L  +   +  RG  VD  +
Sbjct: 573  IDRATHYAAEDAEVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQI 632

Query: 204  AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTC 259
               L+  +     +L+ E+  L      +    ++L   LF + GL     T+    +T 
Sbjct: 633  LSRLSGELAQSAARLEDEIYVLAG-ERFNIGSPKQLGDILFGKMGLSGGSKTKTGQWSTS 691

Query: 260  QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             +VL        +  +   +  + ++      + L   ++ + +   T   L ++ TGR 
Sbjct: 692  AQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRL 751

Query: 320  SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
            S      QN+P  +    +                         +R+  I++   KL+ A
Sbjct: 752  SSSEPNLQNIPVRTAEGRK-------------------------IRTAFISTPRHKLISA 786

Query: 380  DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
            D + IE RVLA +A      KAFE G D++  T +  F V    +  + R   K +   +
Sbjct: 787  DYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGI 846

Query: 440  GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
             Y   A           L++             E +    ++    +    +    +   
Sbjct: 847  IYGISA-----FGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 901

Query: 500  GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            G          R  +  V        +A       G A    +R  + +     +     
Sbjct: 902  GRRINYP--EIRSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKIEPALVEVGL-- 954

Query: 560  LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                                                            D +   ++    
Sbjct: 955  -----------------------------------------------ADRVRM-LLQVHD 966

Query: 620  AGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
                ++  V DE         E    ++  +M +   P+    +PL+ +   +  +
Sbjct: 967  E---LIFEVEDE-------DVEKAMPVIVSVMENATMPALEMRVPLRVDARAATNW 1012


>gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
 gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3'
           exonuclease [Serratia symbiotica str. Tucson]
          Length = 933

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 107/698 (15%), Positives = 205/698 (29%), Gaps = 154/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET     L+            +I  +F             HD            + 
Sbjct: 357 AFDTETDGLDTLS----------ANLIGLSFAIAPGEAAYLPVAHDYLDAPAQLDRASVL 406

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           + LK  LE+  V  V  N  F+  VL     +++    +  T++ +           +  
Sbjct: 407 ERLKLLLEDEKVLKVGQNLKFDMGVLARY-GINLRGIAY-DTMLESYVLDSVGGRHDMDN 464

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + I      E            ++ A      Y   D  VT  +
Sbjct: 465 LADRY--------LGHKTITF----EEIAGKGKNQLTFNQIALAQAALYAAEDADVTLRL 512

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              + P               +  L  +   I   G  +D A+    +Q +     +L+ 
Sbjct: 513 HLAMWPQLKQSAELLRVFNEIDMPLVPVLSHIERTGVLIDPAILSVHSQELTKRLGELEI 572

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +   L++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 573 QAHELAG-EPFNLVSLKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPLPKVI 631

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 632 LEYR-GLAKLKTTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSSDPNLQNIPVRNDE 689

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA EG ++V AD + IE R++A ++ +
Sbjct: 690 DRR-------------------------IRQAFIAPEGYRIVAADYSQIELRIMAHLSQD 724

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              LKAF  G+D++  T A  F V   +V  +QR   K +   L Y   A          
Sbjct: 725 AGLLKAFAEGKDIHRATAAEVFGVPLDKVASEQRRSAKAINFGLIYGMSA-----FGLAR 779

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +   E +    ++    ++   E        G          R  + 
Sbjct: 780 QLGVPRGEAQRYMDRYFERYPGVLDYMERTRQQAAEQGYVTTLDGR--RLYLPDARSSN- 836

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            +        +A       G A    KR  + +    +++   ++ +             
Sbjct: 837 GMRR--KAAERAAINAPMQGTAADIIKRAMIEVDAWIQEQGQPLVRM------------- 881

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +V  VH+ ++  
Sbjct: 882 -------------------------IMQ-------------VHDE---LVFEVHESVI-- 898

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                + ++  +  LM  + + A  +PLK +      +
Sbjct: 899 -----DASSQRIRELMEGSMALA--VPLKVDVGVGANW 929


>gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
 gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f]
          Length = 949

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 96/694 (13%), Positives = 193/694 (27%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         D      +    
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN +   V  N  ++  VL+      +       T++            +  + E 
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVK-GPLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K       +    Y   D  VT ++   L
Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVL 533

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   I   G  +D       +     +  ++++E+  L
Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYEL 593

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL S +   P   ++  +R
Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P    + +E 
Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE- 709

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  EG     AD + IE R++A ++ ++  +
Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +  D++  T A+ +      V  D R   K     + Y               +N+
Sbjct: 746 DAFLSNHDIHAATAAKIYKTDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +   E    +       +R       +++ V  
Sbjct: 801 DRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHR--KRFLPDINSRNAVVRG 858

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                                          
Sbjct: 859 Y---AERNAINAPIQGSAADII-------------------------------------- 877

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 ++     Y     E  +QA         M+          L VHDE+    P  
Sbjct: 878 ------KVAMARIYQRFQAEG-IQA------K--MI----------LQVHDELNFSVPVN 912

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +        ++   +PLKA+    + +
Sbjct: 913 EKERVEEIVIE-EMEKAYRMHVPLKADCGWGRNW 945


>gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
 gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27]
          Length = 984

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 104/727 (14%), Positives = 192/727 (26%), Gaps = 175/727 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
            + ID ET              A    ++  +              H             
Sbjct: 372 YIAIDTETVIEP---GAPFDVDALRSRLVGLSIAVAPGEAYYLPFAHRRDDGSGNLALLA 428

Query: 50  -------------------------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
                                    D      L+  LE+  VT +A N+ ++  VL    
Sbjct: 429 GDTGTGIVGRRINAGAPEPVNLPPFDSDACAPLRAMLEDPSVTKIAQNAKYDLLVL-RSS 487

Query: 85  NLDIPIHRWICTLVLARSNGL---PSALKAVG-EALKLSSQKMEEGKELIARFCKGETHE 140
            + +       T++ +           L  +  E L  +    +                
Sbjct: 488 GVRVAGVG-FDTMLASYVLDPGRRSHGLDLLALEQLGHTMTAYDTL-------------V 533

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQ 190
                  P          +Y   DV +T  +  +LEP+             E  L  +  
Sbjct: 534 GKGKTQLPFDVAPVDTARDYSCEDVDITMRLRAKLEPMLAEHALLSLFQEIEVPLVSVLA 593

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  +D+    +L      ER +++Q + +       +     KL+  LF + GL 
Sbjct: 594 EMEWEGIAIDLDWFASLKARFAAERGRVEQAIYAEAG-EEFNINSNPKLRAILFEKLGLP 652

Query: 251 LEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
           ++  T    +T   VL    +       +        +     ++ L   ++   R   T
Sbjct: 653 VKKKTATGPSTDASVLQELAEEGHVLPTLLMEYREIFKLEGTYIDALPRLVHPRDRRLHT 712

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                 S TGR S      QN+P       +                         +R  
Sbjct: 713 SYSQTVSATGRLSSHDPNLQNIPIRRELGRD-------------------------IRRG 747

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            +  EG +L+ AD + IE RVLA ++ +   + AF+ G D++  T A  F V    VT +
Sbjct: 748 FVPREGWRLLSADYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSE 807

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            RA  K +  A  Y  GA A  +      L +          +  E +     F      
Sbjct: 808 MRARAKTINFATIYGQGAHALSR-----QLRITNAEAKAFIETYFERFAGVRGFLDQCVV 862

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
           +       +        R     ++++  +        +  +     G A    K   + 
Sbjct: 863 DARARGYVETLFKR--RRYIPELKERNFNIRAFG---ERVAQNAPIQGSAADLIKIAMIN 917

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
           +                                        R               ++ 
Sbjct: 918 V----------------------------------------RNAIDAE--------GLAS 929

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                 ++              DE+V E P  +     +++   M         +PL  E
Sbjct: 930 ----RMLLQVH-----------DELVFELPVEEADTLSALVKREMEGAA--VLNVPLLVE 972

Query: 667 GYESKRY 673
                 +
Sbjct: 973 MGLGTDW 979


>gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
 gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185]
          Length = 949

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 96/692 (13%), Positives = 193/692 (27%), Gaps = 143/692 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         D      +    
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPADQEEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           +   EN +   V  N  ++  VL+    + +       T++                 L+
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GVQVK-GPLFDTMIAHYVLQP---------ELR 475

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                + E           E         K     A +    Y   D  VT ++   LE 
Sbjct: 476 HGMDYLAEIYLRYQTIHIDELIGPKGKNQKNMRDLAPKDVYRYACEDADVTLKLKNVLEK 535

Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +   I   G  +D       +     +   +++E+  L  
Sbjct: 536 ELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMENIEKEIYELAG 595

Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    +++   LF +  +      T+T    T + VL S +   P   ++  +R  
Sbjct: 596 -ETFNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR-G 653

Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             +     ++ L + +N   GR+  +      + TGR S      QN+P    + +E   
Sbjct: 654 LKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE--- 709

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R   I  EG     AD + IE R++A ++ ++  + A
Sbjct: 710 ----------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDA 747

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F +  D++  T A+ + +    V  D R   K     + Y               +N+  
Sbjct: 748 FLSNHDIHAATAAKIYKIDLQDVGSDMRRKAKTANFGIIYGISV-----FGLAERMNVER 802

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                  +   E +   + +     +   E    +                         
Sbjct: 803 KEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIF---------------------- 840

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                               ++R +P +  +           +        +        
Sbjct: 841 -------------------HRKRFLPDINSRNAVVRGYAERNA--------INAPIQGSA 873

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
               ++     Y    TE  +QA         M+          L VHDE+    P  ++
Sbjct: 874 ADIIKVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVEEK 914

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                +        ++   +PLKA+    K +
Sbjct: 915 ERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945


>gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
 gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108]
          Length = 952

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 96/693 (13%), Positives = 195/693 (28%), Gaps = 147/693 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            L ID ET     +          +  ++  +F   ++                +   L+
Sbjct: 381 ILSIDTETTGTEPM----------EAELVGMSFSDAENQAYYVPVPPIREEALKIVNELR 430

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN     V  N  ++  VL+    + +       T++            +  + E  
Sbjct: 431 PLYENEKSLKVGQNIKYDMIVLQNYE-IQVK-GPLFDTMLAHYVLQPELRHNMDYLAEIY 488

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +     ELI                K     +      Y   D  VT ++   LE
Sbjct: 489 LH--YQTIHIDELIG---------PRGKNQKNMRDLSPEEVYRYACEDADVTLKLKNILE 537

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       ++   +   ++++E+ +L 
Sbjct: 538 KELKEQGGEHLFHEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTIRLQEIEKEIYAL- 596

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL S +       ++   R 
Sbjct: 597 ADETFNIASPKQVGEILFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHGIIGKILEYR- 655

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +++L + +N       T      + TGR S      QN+P      +E   
Sbjct: 656 GLKKLLSTYIDSLPQLINPRTGHIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKE--- 712

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R   I  +G +   AD + IE R++A ++ ++  + A
Sbjct: 713 ----------------------IRKAFIPDDGCEFFSADYSQIELRIMAHLSEDRNMIDA 750

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F +G D++  T A+ +    + VT D R   K     + Y               +N++ 
Sbjct: 751 FRSGYDIHAATAAKIYKTDISDVTADMRRKAKTANFGIIYGISV-----FGLAERMNVSR 805

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                  +   E +   + +         E+   +       +R       +++ V    
Sbjct: 806 QEAKELIDGYFETYPQVKEYMDRSIRIARENGYVETIFHR--KRFLPDINSRNAVVRGY- 862

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +        G A    K                                       
Sbjct: 863 --AERNAINAPIQGSAADIIKVAMAH---------------------------------- 886

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
                      +   ++ N         L   M+          L VHDE+    P +++
Sbjct: 887 ----------IHRRFVSNN---------LKAKMI----------LQVHDELNFSVPASEK 917

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                +    M     ++  +PLKA+    K +
Sbjct: 918 EIVQKIVIEEMEHA--YSMHVPLKADCGWGKNW 948


>gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
 gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571]
          Length = 1020

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 103/705 (14%), Positives = 187/705 (26%), Gaps = 156/705 (22%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------- 50
            +  D ET S   +             ++  +     +        H              
Sbjct: 433  VAFDTETTSLDPM----------QADLVGVSLALAPNEACYIPLAHVGAGDGLFTEGLLP 482

Query: 51   -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                       LK  LE+     + HN  ++  VL       I +  + CT+ ++ +   
Sbjct: 483  GQIPFNDALAALKGMLEDGGTLKIGHNVKYDAAVLARH---GITVAPYDCTMCMSYALDA 539

Query: 106  PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                            ++   K L                     R        Y   D 
Sbjct: 540  GRG--------GHGMDEL-SIKYLGHTPIAFTEVAGKGKSQITFDRVPLEAATAYAAEDA 590

Query: 166  TVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
             VT  +++ L+P    E          + L  +   +  RG  +D A    L+       
Sbjct: 591  DVTLRLWRVLKPRLPSEGMTTVYETLERPLIAVLARMEARGISIDRATLARLSSEFAQGA 650

Query: 216  TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTP 271
             +L+ E+  L    + +    +++   LF +  L     T     +T   VL    +   
Sbjct: 651  ARLEDEISGLAGEKI-NVGSPKQIGDLLFGKMQLPGATKTPTGAWSTKANVLDELAEAGH 709

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            +  Q      + S+      + L   +N       T   L A+ TGR S      QN+P 
Sbjct: 710  ELPQKILAWRQLSKLRSTYTDALPNYVNPTTHRVHTSYALAATTTGRLSSSEPNLQNIPI 769

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
             +                              +R   +A  G KLV AD + IE R+LA 
Sbjct: 770  RTEEGRR-------------------------IRRAFVAVPGTKLVSADYSQIELRLLAE 804

Query: 392  MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            +A      +AF  G D++  T +  F V    +  + R   K +   + Y   A      
Sbjct: 805  IAEIPALRQAFRDGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA-----F 859

Query: 452  ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                 L +             E +     +    +    EH   +   G  C     A  
Sbjct: 860  GLANQLGIPRDEAGQYIKRYFERFPGIRAYMDETRAYCREHGYVETLFGRRCHYPDIA-- 917

Query: 512  QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
              +  +        +A       G A    +R  + +     D                 
Sbjct: 918  ASNPSIRAFN---ERAAINARLQGTAADIIRRAMIRMEGALADAGL-------------- 960

Query: 572  DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                                              +R      ++                
Sbjct: 961  ---------------------------------SAR-----MLLQVHDE----------- 971

Query: 632  IVCETPDTDEFN-ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
            +V E PD +      ++  +M +   P+    +PL+ E   +  +
Sbjct: 972  LVFEVPDAEVEATLPVVRRVMETAARPAVELAVPLQVEARAADNW 1016


>gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
 gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091]
          Length = 975

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 112/701 (15%), Positives = 204/701 (29%), Gaps = 155/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 397 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 446

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 447 DVLGHLKPYLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 504

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 505 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 552

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 553 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 612

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           +  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 613 QAYA-AADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 671

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 672 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 729

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 730 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 764

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +   
Sbjct: 765 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 819

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 820 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 877

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R+ +   +
Sbjct: 878 NTNARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 917

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           G+                                      M         +VL    E+V
Sbjct: 918 GS-----------------------------------KLVM-QVHDE---LVL----EVV 934

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 935 ----ETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 971


>gi|162149305|ref|YP_001603766.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5]
          Length = 943

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 95/719 (13%), Positives = 176/719 (24%), Gaps = 175/719 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------------- 49
            ID ET     L             ++  +              H               
Sbjct: 346 AIDTETDGLDPLR----------AGLVGISLAVAPGRACYIPLAHTAEPPPPQLLPDLLL 395

Query: 50  ------------DPVM-----PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
                        P +       +L   L +  V  +  N+ F+  VL            
Sbjct: 396 EPAPQDDAPDPVGPQLETGLALAILGPLLADASVLKIFQNAKFDLLVLTRAG--APQPAP 453

Query: 93  WICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
              T++++ +         +  +             G   I                 P 
Sbjct: 454 VDDTMLISYAQFAGRHGQGMDELSRLY--------LGHTPIPYD----EVTGTGRNRVPF 501

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCV 199
            R        Y   D  VT  ++  L P                 L  +   +   G  +
Sbjct: 502 ARVDVARATAYAAEDADVTLRLWLSLRPTLRIHHALALYEELERPLVAVLADMERAGIAI 561

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257
           DV     ++        +++ E+++L      +    ++L   LF E GL      ++  
Sbjct: 562 DVVELRRMSADFATRMAQMEAEIQALAG-RSFNVGSPKQLGEILFDEMGLPGGKRMKSGA 620

Query: 258 --TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
             T   VL                  + ++      + LV+  + D     T   +  + 
Sbjct: 621 WGTDSSVLQDLADQGHDLPGRILAWRQLAKLKSTYADALVKQADPDTARVHTSFQMAITS 680

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  +                              +R   +A+ G  
Sbjct: 681 TGRLSSNEPNLQNIPIRTEEG-------------------------GRIRRAFVAAPGHV 715

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R+LA +A      +AF  G+D++  T +  F +    +    R   K +
Sbjct: 716 LLSADYSQIELRLLAHVADIPALREAFALGQDIHARTASEVFGIPIEGMDPLTRRRAKAI 775

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y   A           L +         ++    +     +   +++   +    
Sbjct: 776 NFGIIYGISA-----FGLGRQLGIPPGEARAYIDAYFARYPGIRAYMETVKQEAKDQGYV 830

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
               G  C     A R    R         +        G A    KR  V L +     
Sbjct: 831 TTPFGRRCWVPGIADRSAVRR-----AYAERQAINAPLQGGAADIIKRAMVRLPHALASA 885

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                    GR L                                              +
Sbjct: 886 G------LDGRLL----------------------------------------------L 893

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                           ++ E     +    +++  +M S  S    +PL  E      +
Sbjct: 894 QVHDE-----------LLFEVRAGQQDALSALVKQVMESAAS--LSVPLVVETGTGANW 939


>gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
 gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768]
          Length = 930

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 116/701 (16%), Positives = 205/701 (29%), Gaps = 154/701 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A D  ++  +  F           H            
Sbjct: 351 DTIGIDTETTSLD----------AMDASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 400

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 401 DVLGRLKPHLENPVLKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 458

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 459 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 506

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 507 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 566

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 567 EAYA-AASQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 625

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 626 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 683

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 684 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 718

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     +   
Sbjct: 719 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 773

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 774 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 831

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R LV  D+
Sbjct: 832 NANARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLVSDDL 872

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            +                         I+Q                    +VL       
Sbjct: 873 KSKL-----------------------IMQ-------------VHDE---LVL------- 886

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P+ +       L  +M         +PL AE    + +
Sbjct: 887 -EVPEAELDLVKEKLPQIMAKVDEGMLKVPLVAEVGVGENW 926


>gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153]
          Length = 930

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 113/701 (16%), Positives = 204/701 (29%), Gaps = 155/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIEQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +   
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 832

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R+ +   +
Sbjct: 833 NANARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 872

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           G+                                      M         +VL    E+V
Sbjct: 873 GS-----------------------------------KLVM-QVHDE---LVL----EVV 889

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 890 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888]
          Length = 995

 Score =  355 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 107/715 (14%), Positives = 199/715 (27%), Gaps = 164/715 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET     L          D  ++  +              H          D   
Sbjct: 396 VAFDTETTDLSAL----------DAELVGISLAVAPGEACYIPLGHTGPSGDLFGGDDNR 445

Query: 54  PQVLK---------EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
           PQ L            LE+  V  +  N  ++  V+K      I I  +  T++L+ +  
Sbjct: 446 PQQLAANEALALIGPLLEDPSVLKIGQNIKYDALVMKR---RGIEIVSFDDTMLLSYALD 502

Query: 105 LP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  + A+ E           G   +               +K           EY 
Sbjct: 503 GGRGQHGMDALAERH--------LGHMCMTFAQAMGHAPGAKKSDKTFAAMPLDKATEYA 554

Query: 162 KGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             D  VT  ++  L+P            + E+ L  +   +   G  VD  +   L+   
Sbjct: 555 AEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIVGMEHAGIKVDRDILSRLSHAF 614

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK 267
                +L++E+  L      +    ++L   LF    L     T++    T   +L    
Sbjct: 615 AQRTVRLEEEINGLVGHK-FNLGSPKQLGELLFDRLKLPGGKKTKSGQWETRANLLDDLA 673

Query: 268 KLTPQ------AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
                       I       + ++      + L   +N++     T   LGA+ TGR + 
Sbjct: 674 ANEEIDGDARRLINTMLEWRQMTKLKSTYTDALPAYINAETGRIHTSYALGATTTGRLAS 733

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+P  ++   E                         +R+  IA +G +L+ AD 
Sbjct: 734 SDPNLQNIPIRTKEGRE-------------------------IRTAFIADKGMQLISADY 768

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA +A      KAF  G D++  T +  F V    +  + R   K +   + Y
Sbjct: 769 SQIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINFGIIY 828

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              A           L+++         +  + +    ++    ++    H   +   G 
Sbjct: 829 GISA-----FGLANQLSISREEASDYIKTYFQRFPGIRDYMDATKKQVHAHGHVETIFGR 883

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                +     K+  +      L +A       G A    +R  + +     D       
Sbjct: 884 RIHYPEIN--TKNPSMRGF---LERAAINAPIQGSAADIIRRAMIRMPAALVDA-----K 933

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
           L S R L                                              +      
Sbjct: 934 LSSARML----------------------------------------------LQVHDE- 946

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673
                     +V E  D +     +    +M +    A    +P+  +   +  +
Sbjct: 947 ----------LVFEVADNEASALITTARRVMETAAEPALKLAVPIHVDAKAANNW 991


>gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
 gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756]
          Length = 894

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 100/699 (14%), Positives = 188/699 (26%), Gaps = 156/699 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVH--DPVMPQVLK 58
           + ID ET S                 ++ F+  + +            H     +P+ + 
Sbjct: 317 VAIDTETSSLDP----------HAAELVGFSLAWFEGDRTRAVYVPLGHREGKQIPRDVA 366

Query: 59  -----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111
                  LE+     +A N+ F+  +      L         TL+ +          L +
Sbjct: 367 LALLGPWLEDGSKAKLAQNAKFDWQIF-WAQGLRPRGLA-RDTLLESYVLDSTAAHDLDS 424

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E               I+             + +            Y   D  V   +
Sbjct: 425 LAERY--------LQHRNISY----AELTGKGRQARSFAAVDIASATAYAAEDAEVCLRV 472

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   +              L  +   +   G  +DV +   L++ +D     ++ 
Sbjct: 473 DAQMWPQIRRHEGLARVFRDIEMPLVEVLARMEWAGVRIDVDVLKRLSEELDTRMATVES 532

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           E  +       +    ++++T LF + GL +   T     +T + VL+   K       +
Sbjct: 533 EAFAAAGQR-FNLNSPKQIQTILFDKMGLPVLKKTPGGQPSTNEDVLAELAKQADLPRLI 591

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
            + R   ++      + L + +    GR+        A+ TGR S      QN+P  S  
Sbjct: 592 LDYR-GLAKLKNTYADALPQMIQERTGRVHTHYHQAVAA-TGRLSSSDPNLQNIPVRSDL 649

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G  L+ AD + IE R++A ++G+
Sbjct: 650 GRR-------------------------IRQAFVAEPGHLLISADYSQIELRIMAHLSGD 684

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  G D++  T A  F +   QVT +QR   K +   L Y              
Sbjct: 685 AGLRQAFARGLDIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQTP-----YGLAQ 739

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +             E +     +    +    +    +   G          R ++ 
Sbjct: 740 QLGVGQGEAKAYMERYFERYPGVREYMENTRRLARQQGYVETLFGR--RLYLPEIRSQNP 797

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +         L+     GR L       
Sbjct: 798 ARRNY---AERAAINAPMQGTAADLIKLAMIAVD------AWLLAQTDHGRML------- 841

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                                  +                ++ E
Sbjct: 842 ---------------------------------------LQVHDE-----------LILE 851

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+     A  ML   M      A  +PL         +
Sbjct: 852 VPEKAVDAACQMLREKMEGVAELA--VPLTVGLGVGANW 888


>gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
 gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941]
          Length = 972

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 113/712 (15%), Positives = 204/712 (28%), Gaps = 175/712 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVMPQ 55
           +  D ETR    L             ++  +              H           +  
Sbjct: 388 VAFDTETRGMNPLRD----------DLVGLSLATVPGRAWYIPVGHTTGEMQLPRDRVIA 437

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE 114
            L+    +     VAHN+ F+  VL+      +P+      T++ A        LK +  
Sbjct: 438 ALRSFFADPARPKVAHNAKFDIEVLERA---GMPVAGLSFDTMLAAGLLDKRRNLKDLAF 494

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                ++ ++   +LI                             Y   D  +T  +   
Sbjct: 495 YELELAEPLDAIGDLI----------GKGKNQVTFAEVPIARATRYAAADADMTLRLQPA 544

Query: 175 LEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           LE                E  L  +   +   G  +DV     L + +  E  +++Q++ 
Sbjct: 545 LEAKLRAAGSLADMFYRLEMPLVPVLVRMEQSGILLDVPYMRALGERMGRELAQIEQQIF 604

Query: 224 SLTYGLVSSSRCLEKLKTWLFL-ETGLHLE------DLTETTCQRVLSSN--KKLTPQAI 274
           ++      +    ++L   LF  +  L             +   + L        T    
Sbjct: 605 AIAG-KPFNINSGDQLSEVLFGPKINLPTTGLERTRTGRYSLTAQALEELQASDTTGIIE 663

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  +R   S+     ++ L   +N + GR+      LGA+ TGR S      QN+P  +
Sbjct: 664 LILRHRR-LSKLKSTYVDELPALVNPETGRVHTDYNQLGAA-TGRLSSNSPNLQNIPTRT 721

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               E                         VR   IA+ G  L+ AD + IE RVLA + 
Sbjct: 722 EEGRE-------------------------VRRGFIAAPGHVLIAADYSQIELRVLAHIT 756

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+   ++ F  G D++  T AR F V    V K+QR I K +   + Y            
Sbjct: 757 GDPNLIQTFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVIY-----GISPFGL 811

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L                                                +  +   +
Sbjct: 812 AQRL---------------------------------------GISREQARNLIDSLFNQ 832

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
             R+ +    + +  E     G                        +    GR     D+
Sbjct: 833 FPRIRDY---IDRTLETGRNEGY-----------------------VQSLFGRRRPMFDL 866

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL------T 627
             +        +   RE           +Q+ + DI+   M+          L       
Sbjct: 867 RTS----GPRRQAAEREAINHP------IQSTAADIMKLAMIAVDAELRRRRLRTRMLLQ 916

Query: 628 VHDEIVCETPDTDEFN-ASMLYHLMTSN-----PSWAKGLPLKAEGYESKRY 673
           VHDE++ E P+ +     +++   M        P +A  +PL+ E  +   +
Sbjct: 917 VHDELIFEAPEAEVDEVVALVRERMEGVLSDMHPPFA--VPLRVEIEKGSNW 966


>gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
 gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A]
          Length = 1020

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 97/690 (14%), Positives = 194/690 (28%), Gaps = 160/690 (23%)

Query: 27   DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66
               +   +     +        H                         ++LK  LE+   
Sbjct: 444  QAELAGLSLALAPNDACYIPLGHKQAGDSAGLFAAGLAPDQIAIRDALELLKPILESGGH 503

Query: 67   TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
              +  N  F   +L       I +       +++ +         +      S  K   G
Sbjct: 504  LKIGLNIKFSAVLLAQH---GIVMQNHDDVELISYTLDAGRGSHDLA-----SLAKRWLG 555

Query: 127  KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------- 179
               ++                   + A      Y      +T  +++ L+P         
Sbjct: 556  HTTLS----HGELTGSGRNRLAVDQVAIDRATAYAAEYADMTLRLWQVLKPRLVAERMNA 611

Query: 180  ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
               + E+ +      +  RG  +D  +   L+  +     +L+ E++ L    + +    
Sbjct: 612  VYETLERPMTATLARMERRGITIDRQVLSRLSGELAQTAARLEAEIQQLAGEPI-NVGSP 670

Query: 237  EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            +++   +F + GL     T+    +T  +VL    +      +   +  + S+      +
Sbjct: 671  KQIGDIMFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHDFPRKILDWRQVSKLKSTYTD 730

Query: 293  TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
             L E +N   R   T   L A+ TGR S      QN+P  +    +              
Sbjct: 731  ALPEYVNPQTRRVHTTYALAATTTGRLSSNEPNLQNIPVRNEEGRK-------------- 776

Query: 353  DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                       +R   IA+ G +LV AD + IE R+LA +A      +AF  G D++  T
Sbjct: 777  -----------IRRAFIAAPGHRLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMT 825

Query: 413  YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
             +  F V    +  + R   K +                    G++              
Sbjct: 826  ASEMFGVPVQGMPGEIRRRAKAINF--------------GIIYGIS-------------- 857

Query: 473  EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                A +            K + ++   +    +       +  
Sbjct: 858  ----------------AFGLANQLGIPREEAAAYIKKYFERFPGIRAYMDATRDFCRE-- 899

Query: 533  ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
             +G                             GR   Y D+        +      R   
Sbjct: 900  -HGYVTTL-----------------------FGRKCHYPDIKAPNP---SHRAFNERAAI 932

Query: 593  YGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN-AS 645
                      Q  + DI+   M+         K    ++L VHDE++ E PD +      
Sbjct: 933  NARL------QGSAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDEEVAATLP 986

Query: 646  MLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
            ++ H+M     P+    +PL+ +   +  +
Sbjct: 987  VVQHVMQDAPFPAVLLSVPLQVDARAADNW 1016


>gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013]
          Length = 930

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 204/701 (29%), Gaps = 155/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +       +++ +          L
Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDSMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             +             G+ L       E+      +       A     EY   D     
Sbjct: 460 DELS------------GRWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +   
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 832

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R+ +   +
Sbjct: 833 NTNARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 872

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           G+                                      M         +VL    E+V
Sbjct: 873 GS-----------------------------------KLVM-QVHDE---LVL----EVV 889

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 890 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568]
 gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568]
          Length = 934

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 109/702 (15%), Positives = 203/702 (28%), Gaps = 162/702 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VMP 54
             D ET     LT            +I  +F             HD            + 
Sbjct: 358 AFDTETDGLDTLT----------ANLIGLSFAIAPGEAAYLPVAHDYLDAPTQLDRAHVL 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             LK  LE+     V  N  F+ ++L    ++ +       T++ +           + +
Sbjct: 408 ATLKPLLEDEKALKVGQNLKFDMSLLARY-DITLRGIA-FDTMLESYVLDSVGGRHDMDS 465

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +    ++ A      Y   D  VT ++
Sbjct: 466 LSDRY--------LGHKTVTF----EEIAGKGKKQLTFNQIALEQAAPYAAEDADVTLQL 513

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              + P               E  L  +   I   G  +D ++  T +  +     +L+ 
Sbjct: 514 HLAMWPQLKESAELLTVFNQIEMPLLPVLSHIERTGVLIDQSILATHSIELTKRLAELEI 573

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  L+ +  L +   T     +T + VL+      P    +
Sbjct: 574 QAHEL-AEEPFNLASTKQLQAILYEKQKLPILKKTPGGAPSTNEEVLAELALDYPLPKVI 632

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L   +N   GR+  +      + TGR S      QN+P  +  
Sbjct: 633 LEYR-GLAKLKTTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSSDPNLQNIPVRNDE 690

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA EG ++V AD + IE R++A ++ +
Sbjct: 691 GRR-------------------------IRQAFIAPEGYRIVAADYSQIELRIMAHLSQD 725

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  LKAF  GED++  T A  F +   +VT +QR   K +   L Y   A          
Sbjct: 726 EGLLKAFAAGEDIHRATAAEVFGLPLDKVTNEQRRSAKAINFGLIYGMSA-----FGLAR 780

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +   E +     +    ++            G          R    
Sbjct: 781 QLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAASQGYVSTLDGR---------RLYLP 831

Query: 516 RVSE----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            VS           +A       G A    KR  + +    + +   ++ +         
Sbjct: 832 DVSSSNGMRRKAAERAAINAPMQGTAADIIKRAMIEVDAWLQAQEKPLVRM--------- 882

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                                        I+Q                    +V  VH E
Sbjct: 883 -----------------------------IMQ-------------VHDE---LVFEVH-E 896

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            V E       +   +  LM ++ + A  +PLK +      +
Sbjct: 897 SVLE------ESNQRIRELMENSMALA--VPLKVDVGVGANW 930


>gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255]
 gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255]
          Length = 1010

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 97/688 (14%), Positives = 194/688 (28%), Gaps = 160/688 (23%)

Query: 29   CVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDVTI 68
             +   A     +        H                         ++LK  LE+     
Sbjct: 436  ELSGIALALAPNHACYIPLSHKQSGDSAGLFAAGLAPDQIAIRDALELLKPILESRGHLK 495

Query: 69   VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
            +  N  F   +L       I +       +++ +         +      S  K   G  
Sbjct: 496  IGLNVKFSAVLLAQH---GIVMQNHDDIELISYALDAGRGSHDLA-----SLAKRWLGHA 547

Query: 129  LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------- 179
             ++                   + A      Y      +T  +++ L+P           
Sbjct: 548  TVS----HGELTGSGRNRLAFDQVAIDRATAYAAEYADMTLRLWQVLKPRLVAERMNTVY 603

Query: 180  -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
             + E+ +      +  RG  +D  +   L+        +L+ E++ L    + +    ++
Sbjct: 604  ETLERPMIATLAQMERRGITIDRQVLSRLSGEFAQSAARLEAEIQQLAGEPI-NVGSPKQ 662

Query: 239  LKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
            +   +F + GL     T+    +T  ++L    +      +   +  + S+      + L
Sbjct: 663  IGEIMFGKMGLPGGSKTKTGAWSTSAQILDELAEQGHDFPRKILDWRQVSKLKSTYTDAL 722

Query: 295  VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
             E ++   R   T   L A+ TGR S      QN+P  +    +                
Sbjct: 723  PEYVHPQTRRVHTTYALAATTTGRLSSNEPNLQNIPVRNEEGRK---------------- 766

Query: 355  DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                     +R   IA+ G KLV AD + IE R+LA +A      +AF  G D++  T +
Sbjct: 767  ---------IRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTAS 817

Query: 415  RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
              F V    +  + R   K +                    G++                
Sbjct: 818  EMFGVPVQGMPGEIRRRAKAINF--------------GIIYGIS---------------- 847

Query: 475  WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                              A +            K + ++   +    +   +   +   +
Sbjct: 848  --------------AFGLANQLGIPREEAAAYIKKYFERFPGIRAYMDATREFCRE---H 890

Query: 535  GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
            G                             GR   Y D+ +      +      R     
Sbjct: 891  GYVTTL-----------------------FGRKCHYPDIKSPNP---SHRAFNERAAINA 924

Query: 595  GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN-ASML 647
                    Q  + DI+   M     A         ++L VHDE++ E PD +      ++
Sbjct: 925  RL------QGSAADIIRRAMARMDDALAARNLSARMLLQVHDELIFEVPDDEVAATLPVV 978

Query: 648  YHLMTSN--PSWAKGLPLKAEGYESKRY 673
             H+M     P+    +PL+ +   +  +
Sbjct: 979  QHVMQDAPFPAVLLSVPLQVDARAADNW 1006


>gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H]
 gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H]
          Length = 936

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 101/697 (14%), Positives = 196/697 (28%), Gaps = 152/697 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  +          HD            + 
Sbjct: 360 AFDTETTSVHYMK----------AELVGVSFAIEVGKAAYVPLTHDYEDAPEQLDKEWVL 409

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
             LK  LE+  +  +  N  ++  VL      DI +      T++ +          +V 
Sbjct: 410 AQLKPLLESKTIKKIGQNLKYDANVLSHY---DIALQGIEFDTMIESYCYN------SVA 460

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               + +  +   K L  +    E       +    ++      G Y   D  +T  +  
Sbjct: 461 TRHNMDALAL---KYLDYQTVHFEDVAGKGAKQLTFNQIDIEKAGHYAAEDADITLRLHH 517

Query: 174 RLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            + P               E  L  +   +   G  +D  +    +  +     +L+ E 
Sbjct: 518 AIFPALAETASMLSVFNEIEMPLLPVLARMEQTGVLIDSDILAEQSFTLGQRLDELEIEA 577

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
            +L      +    ++L+  LF +  + +   T     +T + VL       P    +  
Sbjct: 578 HNLAG-KSFNLASPKQLQQILFEDLKIPVIKKTPKGAPSTAEEVLQELALDYPLPKVILE 636

Query: 279 NRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           NR   S+      + L   + +   RL  +      + TGR S      QN+P  S    
Sbjct: 637 NR-GLSKLKSTYTDKLPLMVSDKTNRLHTSYHQAV-TATGRLSSTDPNLQNIPIRSEQGR 694

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +                         +R   IA +  K+V  D + IE R++A ++ ++ 
Sbjct: 695 K-------------------------IRQAFIAPKDHKIVAIDYSQIELRIMAHLSNDKG 729

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF  G+D++  T A  F V   +VT DQR   K +   L Y   A           L
Sbjct: 730 LVTAFSEGKDIHRATAAEIFAVELGEVTTDQRRSAKAINFGLIYGMSA-----FGLAKQL 784

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           ++         +   + +     +    ++   E    +   G          +    + 
Sbjct: 785 HIGRQQAQEYQDKYFQRYPGVLTYMEDTRQQASEQGYVETLYGRRLYLPDINAKNGMRK- 843

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   +A       G A    K+  + +     ++N+  +                 
Sbjct: 844 ----KAAERAAINAPMQGTAADIIKKAMLAVDSWLLEQNDDRI----------------- 882

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCET 636
                                               M         ++  +H D  + E 
Sbjct: 883 ---------------------------------KMTM-QVHDE---LIFEIHQD--IVE- 902

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   + L  LM         +PL AE      +
Sbjct: 903 -----ETTAKLVTLMNDAVE--LSVPLIAEAGIGDNW 932


>gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002]
          Length = 924

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 200/700 (28%), Gaps = 151/700 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQ 55
            L ID ET S            A    ++  +              H          + +
Sbjct: 345 ELAIDTETSSLD----------AHQTDLVGISLSTKIGKACYIPIGHKFKGCLKKETVIK 394

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112
            LK  LE+  V  +  N  F+  VL       I ++    T++++           +  +
Sbjct: 395 KLKPLLEDKSVKKIGQNIKFDFIVLYKH---GINMNSMEDTMLMSYVLDAGKNRHNMDTL 451

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E       K    KE                +             EY   D  +T  ++
Sbjct: 452 SEIH--LQHKTISFKE----------IVGTGKKEINFSDVELDKAMEYAAEDADITYRLY 499

Query: 173 KRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           K                  E+ L  +   +   G  +D      L++  + + +KL++E+
Sbjct: 500 KIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEV 559

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             ++     +    ++L   ++ +  + +   T      T   VL        +  ++  
Sbjct: 560 FKISKKK-FNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLIL 618

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +  + S+      + L E +N + +   T   L A+ TGR +      QN+P  S   ++
Sbjct: 619 DWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGKD 678

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA +G  L+ AD   IE R+LA +A  +  
Sbjct: 679 -------------------------IRKAFIAEKGFTLISADYNQIEMRILADLAEVKEL 713

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            KAF   ED++  T ++ FNV   +V +D R   K +   + Y        +      +N
Sbjct: 714 KKAFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGIS-----QYGLAKQIN 768

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           ++        N+   ++ + + +     +   +        G            K+  V 
Sbjct: 769 VSNHEADEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGR--RSHFNGINDKNFNVR 826

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +A       G A                                       R 
Sbjct: 827 NFQ---ERAAINAPIQGSASEIM-----------------------------------RL 848

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
            +    ++         K+                ++              DE++ E P 
Sbjct: 849 AMIRLNKKFESIKNNKSKI----------------LLQIH-----------DELIFEVPV 881

Query: 639 TDEFNA-SMLYHLMTSNPSWAK---GLPLKAEGYESKRYR 674
            +  N   ++   MTS           PL  +      + 
Sbjct: 882 KEVKNITEIIKDEMTSVTESDLHTFSTPLTVDVNTGDNWG 921


>gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190]
          Length = 975

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 110/701 (15%), Positives = 201/701 (28%), Gaps = 155/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 397 NTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 446

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  L N  +  +  N  +++ V      + +        ++ +          L
Sbjct: 447 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 504

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 505 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 552

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 553 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 612

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           +  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 613 QAYA-AADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 671

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 672 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 729

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 730 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 764

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +   
Sbjct: 765 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 819

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 820 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 877

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R+ +   +
Sbjct: 878 NANARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 917

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           G+                                      M         +VL       
Sbjct: 918 GS-----------------------------------KLVM-QVHDE---LVL------- 931

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  +T+       L  +M         +PL AE    + +
Sbjct: 932 -EVVETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 971


>gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
 gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S]
          Length = 908

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 99/701 (14%), Positives = 202/701 (28%), Gaps = 164/701 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             + ID ET S        +  Y     +I  +  F +             +        
Sbjct: 341 KYISIDTETSS--------LDIYT--ARLIGISISFKEFEGYYIPIEARGKIYIEKHYII 390

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAV 112
           Q      E+ +  I+  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 391 QKFNNFFES-NPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFL 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E  K    K  + +++I              +N      +  +   Y   D  +T  +F
Sbjct: 448 AE--KYLMHKNIKYEDVIQ-------------KNDNFAGISLEMATSYSSEDADITFRLF 492

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                              E     +   + + G  +D        + +  E   ++ E+
Sbjct: 493 NVFSKKLKEDSLDKLMHEIEMPFNNVIIEMEENGIYLDREYLKEYGKELGKELELIETEI 552

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    +++   LF +  L L +  +  +T  +VL S +        +  +R
Sbjct: 553 IKSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLRGQHESIENLIKHR 611

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR +      QN+P       +  
Sbjct: 612 Q-IAKLKSTYTDNLIELINYKTNRLHTNFIQTKTATGRVTSINPNLQNIPIKDEKGRK-- 668

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R       G   + AD + IE  +LA ++ ++  +K
Sbjct: 669 -----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIK 705

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE  +D++  T ++ F +   ++T + R I K +                     ++  
Sbjct: 706 AFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDF 751

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A E        +    ++   + ++ E 
Sbjct: 752 RL------------------------------AKELGITKEEAKGFIDSYFDSYPKIKEF 781

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                     T                                  R    +++ +N    
Sbjct: 782 IINQINFVRNT--------------------------GYSETILKRRRYIKEINSNNYLE 815

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
            +      R          +I+Q  + DI+   M+         K    I+L VHDE++ 
Sbjct: 816 RSA---AERISI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLI 866

Query: 635 ETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +E     +  + M +  +     PL+A     K + 
Sbjct: 867 ESPIKEENEVKKILKIMMETAYTLTP--PLRANIETGKSWG 905


>gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 933

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 95/700 (13%), Positives = 177/700 (25%), Gaps = 159/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   L             +I  +   +          H               
Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQAL 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  V  +  +  ++  V++    + +  +    TL+ +           + +
Sbjct: 408 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVALAGYA-DDTLLESFVLNSGSARHDMDS 465

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +  P  + +      Y   D  +T  +
Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLEDATRYAAEDADITLRL 513

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   I   G CVD A     +  +        Q
Sbjct: 514 HRVLGPRLASEPDLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 574 KATELAG-RSFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 632

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 633 LEYR-GLAKLRSTYTDKLPEMVHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 691 GRR-------------------------IRRAFVAPAGRKLIACDYSQIELRIMAHLSGD 725

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++  T A  F      V+ D+R   K +   L Y   A          
Sbjct: 726 PGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSA-----FGLAR 780

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-RVKKAWRQKH 514
            L +               +    +F    ++   +    +   G         A     
Sbjct: 781 QLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINA----- 835

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    KR  V +                          
Sbjct: 836 -GSQGQRAGAERAAINAPMQGTAADIIKRAMVNVDGW----------------------- 871

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                         R                        ++                +V 
Sbjct: 872 --------IANHAQRAKM---------------------ILQVHDE-----------LVF 891

Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E          S +   M         +PL  +      +
Sbjct: 892 EADIDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 929


>gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211]
          Length = 924

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 97/700 (13%), Positives = 205/700 (29%), Gaps = 151/700 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQ 55
            L +D ET S                 ++  +              H          + +
Sbjct: 345 ELAVDTETNSLDP----------HQADLVGISLSSKVGKACYIPIGHKSSKCINKNDVIK 394

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112
            LK  LE+  V  +  N  F+  VL       I +     T++++           +  +
Sbjct: 395 KLKPLLEDPSVKKIGQNIKFDFIVLFKQ---GIEMTSMEDTMLMSYVLDAGKNRHNMDTL 451

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E           G + I+     +       +             +Y   D  +T  ++
Sbjct: 452 SEIH--------LGHKTISF----KEIVGTGKKEINFSDVEIERAKDYAAEDADITFRLY 499

Query: 173 KRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           K+                 E+ L  +   +   G  VD     TL+   + +   L++E+
Sbjct: 500 KKFSKNLKLEKMINIYEIFEKPLIKILAFMEMEGVEVDNKFLKTLSSKFEKKIKNLEKEI 559

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             ++     +    ++L   ++ +  +     T+     T   VL        +  ++  
Sbjct: 560 FKISKKD-FNIASPKQLGEIIYNDLKIAELKKTKKGSFATSASVLEDLAFKGHKFPKLVL 618

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +  + S+      ++L E +N + +   T   L A+ TGR +      QN+P  S    +
Sbjct: 619 DWRQVSKLKNTYSDSLPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGRD 678

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R    + +   L+ AD   IE R+LA +A  +  
Sbjct: 679 -------------------------IRKAFTSRKNHLLISADYNQIEMRILADLADVKEL 713

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            KAF+  ED++  T ++ FNV   +V +DQR   K +   + Y        +      +N
Sbjct: 714 KKAFKNDEDIHSLTASQIFNVDIKKVDQDQRRKAKAINFGIIYGIS-----QYGLAKQIN 768

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           ++ +      ++   ++ + + +     +   +    +   G            K+  V 
Sbjct: 769 VSNYEAEEFLDAYFAKFPEIKIYMNDTIKFCRKSGYVNNIFGR--RSHFNGINDKNFNVR 826

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +A       G A    +   + L     DK N                     
Sbjct: 827 NFQ---ERAAINAPIQGSASEIMRLAMIRLNKKLSDKKN--------------------- 862

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                                  +Q+       + ++               E++ E P 
Sbjct: 863 -----------------------IQS-------KMLLQIHD-----------ELIFEVPK 881

Query: 639 TDEFNA-SMLYHLMTSNPS---WAKGLPLKAEGYESKRYR 674
            +E     ++   M S       +  +PL  +      + 
Sbjct: 882 NNEKTMIKLIKDEMASVVKSDHHSFSIPLTVDINVGDNWG 921


>gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196]
          Length = 938

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 204/701 (29%), Gaps = 147/701 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +       +++ +          L
Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDSMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             +             G+ L       E+      +       A     EY   D     
Sbjct: 460 DELS------------GRWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               +                         VR    A +G  +V AD + IE R++A ++
Sbjct: 685 EEGRK-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +   
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +   + +     + +  +E        +   G          R K
Sbjct: 775 AKSLGIDNLSAKNFIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 832

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +     +             L     
Sbjct: 833 NANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 884

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                      I+Q                    +VL    E+V
Sbjct: 885 ---------------------------IMQ-------------VHDE---LVL----EVV 897

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 898 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934


>gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
 gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277]
          Length = 926

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 96/692 (13%), Positives = 192/692 (27%), Gaps = 149/692 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVLKEA 60
             D ET S   L             ++      +           D  +      +L+  
Sbjct: 357 SFDTETDSKDALR----------ANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRPL 406

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKL 118
             +T +  V  N  ++  VL     +++   +   T++        L   +  + E L  
Sbjct: 407 FADTAIGKVGQNMKYDIQVLSRY-GIEVR-GQLFDTMIAHYLLFPDLRHNMDEMAETL-- 462

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                  G   I              +     +   +   +Y   D  +T ++++RL  +
Sbjct: 463 ------LGYRTIHY----SDLVGSDKQEVHIRQVPLQNLADYAMEDADITWQLYERLNAM 512

Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            S           E  L  +   +   G  +D  +       +  E  +++ E+  L   
Sbjct: 513 LSEAGMTSLFESIEMPLVPVLVDMERSGVKLDTEVLRRTASRLGEEMQRIEDEIYRLAGH 572

Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +     ++ T LF E  +      T++    T + +L   ++  P    + + R   
Sbjct: 573 S-FNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDYR-GI 630

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     +  L E    DG+L  +     A+ TGR S      QN+P  +     L    
Sbjct: 631 KKLLSTYVEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIPIRTEVGRGL---- 685

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                R+  +        + AD + IE R++A ++ ++  ++AF
Sbjct: 686 ---------------------RAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAF 724

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             GED++  T ++ + +   +VT D R   K     + Y   A        +  LN++  
Sbjct: 725 LHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISA-----FGLSERLNISRT 779

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                       +   + +                  G   +R  +     ++ V     
Sbjct: 780 EAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGR--KRFLRDINSANAVVRGY-- 835

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +        G A                              L    +    +    
Sbjct: 836 -AERNAINAPIQGSAADLI-------------------------KLAMIRIHEEITERKL 869

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
            +R                            M+          L VHDE+       +  
Sbjct: 870 RSR----------------------------MI----------LQVHDELNFNVLRPEAA 891

Query: 643 NASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
               L    M      +  +PL AE  E   +
Sbjct: 892 EVRELVRSCMEGVMP-SLRVPLIAEIGEGANW 922


>gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
 gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485]
          Length = 936

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 109/710 (15%), Positives = 214/710 (30%), Gaps = 180/710 (25%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------VMPQVL 57
             D E  S   L   G         ++  A     +        H+         +   L
Sbjct: 360 AFDTECTS---LQAVGSH-------LVGIALAIAPNDAYYVPVGHEEGEQLPLADVVAAL 409

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEAL 116
                + ++   AHN+ F+  VL     + I +      T++ A   G    LK +    
Sbjct: 410 GPLFADPNIPKFAHNAKFDAEVLA---GVGIQVAGLAFDTMIAAAMLGKRQGLKDLAFYE 466

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD------------ 164
               +     ++LI              +              Y   D            
Sbjct: 467 LKLPEPPTTIEDLI----------GRGSKQISFAAVPIEQAAPYAAADALHTLLLTETLR 516

Query: 165 ----VTVTRE-IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                      ++ R+E        L  +   +   G  +D      L +       +L 
Sbjct: 517 GQLTTDTALRDLYYRVE------LPLIDVLTDMELTGILLDHEYLRELGKRFAQRIAELT 570

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHL--------EDLTETTCQRVLSSNKKLTP 271
           +++ +   G   +    ++L   LF   G++         +    +    VL    +L P
Sbjct: 571 EQIYAKAGGP-FNINSGQQLNEVLFERLGINPRDYGLSKLKSGGYSITAEVLEELSQLYP 629

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
            A  +   R   ++     ++ L + +N   GR+  +   +GA+ TGR S      QN+P
Sbjct: 630 IAADILAYRQ-LTKLKSTYIDALPQLVNPRTGRIHTSYNQIGAA-TGRLSSNNPNLQNIP 687

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
             +    E                         +R   +A+ G + V AD + IE RVLA
Sbjct: 688 VRTEEGRE-------------------------IRRAFVAAPGHRFVAADYSQIELRVLA 722

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G++  + AF+ G D++  T +R F VAP QV K+QR + K +               
Sbjct: 723 HISGDENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVF------------- 769

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G++    A  +                                      ++    
Sbjct: 770 -GVIYGISAFGLAQRLGIE------------------------------RDLARQLIDNL 798

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            ++   +    ++                           +   + +  +    GR  V 
Sbjct: 799 FEQFPGIRRYIDQ--------------------------TLAFGRQHGYVQTLFGRRRVM 832

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDI 624
            D+  + +      R+               +Q  + DI+   M+   +A         +
Sbjct: 833 EDLRASGARRAAAERE----------AINAPIQGTAADIMKMAMVYVHRALRERGLRTRL 882

Query: 625 VLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +L VHDE++ E P+ +   A+  L  +M++   +   +PL         +
Sbjct: 883 LLQVHDELIAEAPEEEVPAAAHLLREVMSNT--YQLVVPLGVNLETGPNW 930


>gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76]
 gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385]
          Length = 983

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 112/701 (15%), Positives = 202/701 (28%), Gaps = 147/701 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 397 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 446

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  L N  +  +  N  +++ V      + +        ++ +          L
Sbjct: 447 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 504

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 505 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 552

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 553 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 612

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 613 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 671

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 672 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 729

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               +                         VR    A +G  +V AD + IE R++A ++
Sbjct: 730 EEGRK-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 764

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +   
Sbjct: 765 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 819

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 820 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 877

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +     +             L     
Sbjct: 878 NANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 929

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                      I+Q                    +VL    E+V
Sbjct: 930 ---------------------------IMQ-------------VHDE---LVL----EVV 942

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 943 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 979


>gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916]
 gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916]
          Length = 1007

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 106/720 (14%), Positives = 206/720 (28%), Gaps = 165/720 (22%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVH-------DPV-- 52
            + +D ET                   ++     +      +      H            
Sbjct: 401  VAVDTETSDLNPFK----------AQLVGVGVCWGADLKDLAYIPVGHMAPAAPDGEDAA 450

Query: 53   ----------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                      + Q L   L ++D      N+ ++R +L     L +     + TL+    
Sbjct: 451  GEPEQLALDAVLQALAPWLASSDHPKALQNAKYDRLILLRH-GLTL-GGVVMDTLLADYL 508

Query: 103  NGLP--SALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    L  + +    ++        +L+         +    +              
Sbjct: 509  RDAAAKHGLDLMAQRDYGITP---TLFTDLV--------GKAKDGKASSFAAVPVDQAAL 557

Query: 160  YCKGDVTVTREIFKRLEPLS------------SKEQELWYLDQTINDRGYCVDVALAHTL 207
            YC  DV +TR +   L                  E  L  +   +   G  +DV     L
Sbjct: 558  YCAMDVHLTRRLALDLRQQLTSMGEQLPALLEQVELPLEPVLALMEATGIRIDVPYLQEL 617

Query: 208  NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRV 262
            +  +     +L+ E + +      +    ++L   LF   GL+ +         +T   V
Sbjct: 618  SAELGATLERLETEAQDVVGTS-FNLASPKQLGELLFDTLGLNRKKSRRTKTGWSTDATV 676

Query: 263  LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSG 321
            L   +   P    +  +R+  S+     +  L + +    GR+         + TGR S 
Sbjct: 677  LEKLEGDHPVVPLLLEHRV-LSKLKSTYVEALPQLVEAETGRVHTDFNQAV-TATGRLSS 734

Query: 322  CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                 QN+P  +                           S  +R   +  EG +L+ AD 
Sbjct: 735  SNPNLQNIPVRTE-------------------------FSRRIRKAFLPQEGWQLLSADY 769

Query: 382  AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            + IE R+L  ++GE+   +A+  G+D++  T      +   +V+ D+R +GK +   + Y
Sbjct: 770  SQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKDEVSADERRLGKTINFGVIY 827

Query: 442  QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              GA   Q+ A  TG++              + +     F    +         +  +G 
Sbjct: 828  GMGA---QRFARETGVS--QVVAKDFLAKYKQRYPKVFAFLELQERLALSRGYVETILG- 881

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                                                      R  P  + +     L+  
Sbjct: 882  ------------------------------------------RRRPFHFDRNGLGRLLGK 899

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620
             P        ++  + +       Q  R            +Q  S DI+   M+    A 
Sbjct: 900  DPL-------EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQTAL 946

Query: 621  -----GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                    ++L VHDE+V E            +   M +  +    +PL  E      + 
Sbjct: 947  QQQGLPAQLLLQVHDELVLEVEPAALDTVRQLVVQTMENAMT--LSVPLVVETGSGANWM 1004


>gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
 gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379]
          Length = 893

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 107/701 (15%), Positives = 187/701 (26%), Gaps = 155/701 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------D 50
              ID ET S              D  ++  +F F DH        H             
Sbjct: 314 EFAIDLETTSLDP----------RDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPR 363

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---S 107
            ++ + L+  LE+   T +  N  F+  VL     + +   R   T++ +          
Sbjct: 364 DLVLERLRPQLESPSPTKIGQNIKFDMQVLATN-GVSLSGIR-FDTMLASYVLNPSRQGH 421

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L A+             G  +I+               K   +        Y   D   
Sbjct: 422 GLDALALEH--------LGHRMISY----AEVTGSGKTQKNFSQVEIETASRYACEDADA 469

Query: 168 TREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           T  + ++  PL             E  L  +   + + G  +D+ L   L++        
Sbjct: 470 TWLLHRKFSPLLAENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSRMAT 529

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT-----ETTCQRVLSSNKKLTPQ 272
           L+  +  L      +    ++L   LF    L     T      +T   VLSS  +    
Sbjct: 530 LEGRIFQLAGTT-FNLNSPKQLGEVLFERLQLKTGKKTKGKTGWSTDNEVLSSLAEEHEI 588

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
           A  + + R   S+      + L   ++       T      + TGR S      QN+P  
Sbjct: 589 ARLILDYR-GLSKLKSTYSDALPRLVHPRTGRVHTSYNQTVTSTGRLSSSDPNLQNIPIR 647

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           S                              +R   IA  G  ++ AD + IE RVLA +
Sbjct: 648 SDEGR-------------------------MIRHAFIAPPGHVIISADYSQIELRVLAHL 682

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+    +AFE  ED++  T +  F + P  VT + R   K +   + Y  G       +
Sbjct: 683 SGDPVFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQG-----SFS 737

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               L +         ++  E    A  F         E       +G            
Sbjct: 738 LARQLGIARKTAEEFISAYKERHAKAVGFLDDCIRQAEEQGFVTTILGR--RLPIADITS 795

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            +  +        +        G A    K   + +    + +           S +   
Sbjct: 796 TNGNIRAF---AQRNAINYPIQGSAADIIKSAMIRVDGRIRSEGLK--------SRLIMQ 844

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           V +   +                                  M                E+
Sbjct: 845 VHDELVFEVREDEL-------------------------LAM----------------EL 863

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + E               M+        +PLK +      +
Sbjct: 864 LVE-------------EEMSRAVE--LRIPLKVDISHGVNW 889


>gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118]
 gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118]
          Length = 933

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 95/700 (13%), Positives = 177/700 (25%), Gaps = 159/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
             D ET S   L             +I  +   +          H               
Sbjct: 358 AFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQAL 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  V  +  +  ++  V++    + +  +    TL+ +           + +
Sbjct: 408 AQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVALAGYA-DDTLLESFVLNSGSARHDMDS 465

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +  P  + +      Y   D  +T  +
Sbjct: 466 LAKRY--------LGYDTVKY----EDVCGKGAKQIPFAQISLEDATRYAAEDADITLRL 513

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   I   G CVD A     +  +        Q
Sbjct: 514 HRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 573

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 574 KATELAG-RSFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 632

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 633 LEYR-GLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 690

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 691 GRR-------------------------IRRAFVAPAGRKLIACDYSQIELRIMAHLSGD 725

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++  T A  F      V+ D+R   K +   L Y   A          
Sbjct: 726 PGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSA-----FGLAR 780

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-RVKKAWRQKH 514
            L +               +    +F    ++   +    +   G         A     
Sbjct: 781 QLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINA----- 835

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    KR  V +                          
Sbjct: 836 -GSQGQRAGAERAAINAPMQGTAADIIKRAMVNVDGW----------------------- 871

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                         R                        ++                +V 
Sbjct: 872 --------IANHAQRAKM---------------------ILQVHDE-----------LVF 891

Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E          S +   M         +PL  +      +
Sbjct: 892 EADIDFVDTLLSEVTTRMAGAAE--LRVPLMVDSGVGDNW 929


>gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
 gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582]
          Length = 933

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 201/702 (28%), Gaps = 156/702 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
                D ET     LT            +I  +F  +          HD           
Sbjct: 354 DVFAFDTETDGLDTLT----------ANLIGLSFAIEPGVAAYLPVAHDYLDAPVQLDRA 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            + + LK  LE+     V  N  F++++L    ++D+    +  T++ +           
Sbjct: 404 YVLETLKPLLEDEKALKVGQNLKFDKSLLARY-DIDLRGIAY-DTMLESYVLDSVSGRHD 461

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + ++ +              L  +    E            ++ A      Y   D  VT
Sbjct: 462 MDSLSDRY------------LDHKTITFEEIAGKGKNQLTFNQIALEQAAPYAAEDADVT 509

Query: 169 REIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
            ++   + P               E  L  +   I   G  +D  +    ++ +     +
Sbjct: 510 LQLHLAMWPKLKESTGQLKVFNEIEMPLLPVLSHIERTGVLIDQHILAAHSKELSKRLGE 569

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ +   L      +    ++L+  L+ +  L +   T     +T + VL+      P  
Sbjct: 570 LEIQAHEL-AEEPFNLASTKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPLP 628

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +   R   ++      + L   +N   GR+  +      + TGR S      QN+P  
Sbjct: 629 KVILEYR-GLAKLKTTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSSDPNLQNIPVR 686

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R   IA  G ++V AD + IE R++A +
Sbjct: 687 NDEGRR-------------------------IRQAFIAPAGYRIVAADYSQIELRIMAHL 721

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  L AF  G+D++  T    F +   +VT +QR   K +   L Y   A       
Sbjct: 722 SQDRGLLNAFAAGKDIHRATAGEVFGLPLDKVTNEQRRSAKAINFGLIYGMSA-----FG 776

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               L +         +   E +     +    ++   E        G          R 
Sbjct: 777 LARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQASEQGYVSTLDGR--RLYLPDVRS 834

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            +  +        +A       G A    KR  + +    + +   ++ +          
Sbjct: 835 SN-GMRR--KAAERAAINAPMQGTAADIIKRAMIAVDAWLQGQQQPLVRM---------- 881

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                                       I+Q                    +V  VH   
Sbjct: 882 ----------------------------IMQ-------------VHDE---LVFEVH--- 894

Query: 633 VCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                ++  +     +  LM  +   A  +PLK +    K +
Sbjct: 895 -----ESAMDDACLRIRSLMEGSMELA--VPLKVDIGVGKNW 929


>gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
 gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45]
          Length = 932

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 97/711 (13%), Positives = 186/711 (26%), Gaps = 168/711 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET    +LT            ++  +   +          H             
Sbjct: 346 YVAVDTETTGLDELT----------AELVGVSLSVEPGQACYIPLTHKASRSDDLFGSDD 395

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                       Q+L   LE+  +  +  N  ++  +      L I +     T++++ +
Sbjct: 396 LAPGQMPFEEALQLLTPMLEDPAILKIGQNMKYDGKIFAQ---LGITVAPIDDTMLMSYA 452

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    +  + E              L       +             +        
Sbjct: 453 MHAGLHGHGMDTLSERY------------LGHTPLPIKPLLGSGKSAVTFDKVPMEDAVP 500

Query: 160 YCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQ 209
           Y   D  VT  ++K  +P   +          E+ L  +   +   G  VD      ++ 
Sbjct: 501 YAAEDADVTLRLWKLFKPQLHRAEVTKVYETLERPLVPVLAQMERAGILVDRDTLSRMSN 560

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSS 265
               +   L+ ++  L      +     +L   LF + GL           +T   VL  
Sbjct: 561 AFAQKMAGLEADIHELAG-ETFNVGSPAQLGEILFGKMGLDGGKKGKTGKYSTGADVLED 619

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                  A +V + R   S+      + L + +N++     T   +  + TGR +     
Sbjct: 620 LATEHDLARRVLDWRQ-LSKLKSTYTDALQDHVNANTGRVHTCYSIAGAATGRLASTDPN 678

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              +R   +A EGK LV  D + IE
Sbjct: 679 LQNIPIRSEEGRR-------------------------IREAFVAPEGKVLVALDYSQIE 713

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A      +AFE G+D++  T +  F+V   Q+T + R   K +   + Y    
Sbjct: 714 LRILAHIAQIDALKEAFERGDDIHAMTASEMFDVPMDQMTPEIRRNAKAINFGVIYGISG 773

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                      L +         +   E +     +    +    EH       G     
Sbjct: 774 -----FGLARNLRIPRAEAQGFIDRYFERFPGIRTYMDDTKAFAKEHGFVQTLFGRKINT 828

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                      +     +   A    I                                 
Sbjct: 829 ---------PNIGAKGPQAGFAARAAINAPI----------------------------- 850

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                           T    + R      +           D+ A+ ++          
Sbjct: 851 --------------QGTAADVIRRAMIRMPEAI--------ADLPAKMLLQV-------- 880

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
              HDE++ E     E    +    +M +   P     + L  +      +
Sbjct: 881 ---HDELLFEVEKGAEDALIAAAREVMENANDPVVKLDVKLTVDAGVGANW 928


>gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062]
          Length = 924

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 102/700 (14%), Positives = 200/700 (28%), Gaps = 151/700 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQ 55
            L ID ET S            A    ++  +              H          + +
Sbjct: 345 ELAIDTETSSLD----------AHQTDLVGISLSTKIGQACYIPIGHKFKGCLKKETVIK 394

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112
            LK  LE+  V  +  N  F+  VL       I ++    T++++           +  +
Sbjct: 395 KLKPLLEDKSVKKIGQNIKFDFIVLYKQ---GINMNSMEDTMLMSYVLDAGKNRHNMDTL 451

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E       K    KE                +             EY   D  +T  ++
Sbjct: 452 SEIH--LQHKTISFKE----------IVGTGKKEINFSDVELDKAMEYAAEDADITYRLY 499

Query: 173 KRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           K                  E+ L  +   +   G  +D      L++  + + +KL++E+
Sbjct: 500 KIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEV 559

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFN 278
             ++     +    ++L   ++ +  + +   T      T   VL        +  ++  
Sbjct: 560 FKISK-KEFNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLIL 618

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +  + S+      + L E +N + +   T   L A+ TGR +      QN+P  S   ++
Sbjct: 619 DWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSEDGKD 678

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA +G  L+ AD   IE R+LA +A  +  
Sbjct: 679 -------------------------IRKAFIAEKGFTLISADYNQIEMRILADLAEVKEL 713

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            KAF   ED++  T ++ FNV   +V +D R   K +   + Y        +      +N
Sbjct: 714 KKAFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGIS-----QYGLAKQIN 768

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           ++        N+   ++ + + +     +   +        G            K+  V 
Sbjct: 769 VSNHEADEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGR--RSHFNGINDKNFNVR 826

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +A       G A                                       R 
Sbjct: 827 NFQ---ERAAINAPIQGSASEIM-----------------------------------RL 848

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
            +    ++         K+                ++              DE++ E P 
Sbjct: 849 AMIRLNKKFESIKNNKSKI----------------LLQIH-----------DELIFEVPV 881

Query: 639 TDEFNA-SMLYHLMTSNPSWAK---GLPLKAEGYESKRYR 674
            +  N   ++   MTS           PL  +      + 
Sbjct: 882 KEVKNITEIIKDEMTSVTESDLHTFSTPLTVDVNTGDNWG 921


>gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
 gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574]
          Length = 882

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 92/670 (13%), Positives = 185/670 (27%), Gaps = 147/670 (21%)

Query: 21  ICKYAEDVCVILFA---FGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYF 75
           +  Y E       +       +  + L         P   VL+   EN+++    H++  
Sbjct: 337 VALYLEGTRHDGISRIFVAVPEQDIYLLPLQDTDPYPALTVLQALCENSEIKKYFHDAK- 395

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
               +     +++       T+V A      ++              +      I     
Sbjct: 396 SALWMLHHHGIELKSLA-FDTMVAAYLLNPTAS--------GYDLIDLALEHLGIVLPVN 446

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
           GE                        + D      ++         E  L  +   +   
Sbjct: 447 GEVSLAAKADAILKLAGELVKKLHLQEED-----RLYF------EVELPLVQVLADMEMA 495

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      ++  +      L   + +L      +    ++L   LF +  L +   T
Sbjct: 496 GVTVDKQGLKEMSAELHDMIESLAHRIHTLAG-EDFNINSPKQLGHILFEKLKLPVYKKT 554

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFL 311
           +   +T   VL    +       +   R   ++      + L   ++   GRL  T    
Sbjct: 555 KTGYSTDAEVLEKLAEEHEIVALILEYRQ-LAKLKSTYTDGLAALVDPQTGRLHSTFHQ- 612

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             + TGR S      QN+P    S                            +R   +  
Sbjct: 613 TVTATGRLSSAEPNLQNIPIRLESGRR-------------------------IRKVFVPR 647

Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            +G  ++ AD + IE RVLA M+ +   L+AF  G+D++  T A  F V   +VT D R+
Sbjct: 648 QKGNLILTADYSQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPMEEVTPDMRS 707

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y               L ++        ++        +++   + +   
Sbjct: 708 RAKAVNFGIVYGIS-----DFGLARDLKVSRREAKSYIDNYFARCPGVKDYIDRVIKEAK 762

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                                                              +RR +P ++
Sbjct: 763 HTGYVTTL-----------------------------------------LNRRRYLPDLF 781

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                                     R+ +NT                   +Q  + DI+
Sbjct: 782 SPNYNARSF---------------GERAAMNTP------------------IQGSAADII 808

Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPL 663
              M+   +          +VL VHDE++ + P+++      ++   M +       +PL
Sbjct: 809 KLAMVRVARELRERNLQAKLVLQVHDELIFDVPESEVNELVDLVRDCMENALP--LDVPL 866

Query: 664 KAEGYESKRY 673
             +      +
Sbjct: 867 VVDVKLGPNW 876


>gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013]
          Length = 983

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 112/700 (16%), Positives = 203/700 (29%), Gaps = 147/700 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
            + ID ET S            A +  ++  +  F           H             
Sbjct: 398 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 447

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110
           +   LK  LEN  +  +  N  +++ V      + +        ++ +          L 
Sbjct: 448 VLGHLKPYLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 505

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E           G E I      E+      +       A     EY   D      
Sbjct: 506 ELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFALR 553

Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +   L               E  +  +   +   G  +D A     +  +  E  KL+QE
Sbjct: 554 LEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQE 613

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQ 275
             +       +    ++L+  LF + G+  + L +      +T + VL       P    
Sbjct: 614 AYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKI 672

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  + 
Sbjct: 673 ILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRTE 730

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
              +                         VR    A +G  +V AD + IE R++A ++G
Sbjct: 731 EGRK-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLSG 765

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +    
Sbjct: 766 DKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLA 820

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++  +     +   + +     + +  +E        +   G          R K+
Sbjct: 821 KSLGIDNLSAKNFIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNKN 878

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           +          +A       G A    KR  + +     +             L      
Sbjct: 879 ANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL------ 929

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                     I+Q                    +VL    E+V 
Sbjct: 930 --------------------------IMQ-------------VHDE---LVL----EVV- 942

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +T+       L  +M         +PL AE    + +
Sbjct: 943 ---ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 979


>gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
 gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM
           18228]
          Length = 932

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 94/694 (13%), Positives = 200/694 (28%), Gaps = 149/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLK 58
            L +D ET S   +             ++  +F + ++         D      +    +
Sbjct: 361 VLSLDTETTSTDPIR----------AELVGMSFSYAENQAFYVPVPADRSEAQKIVDRFR 410

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN ++  V  N  ++  VL     + +       T+V            +  + E  
Sbjct: 411 PVFENREIMKVGQNIKYDMLVLANY-GVQLQ-GPLFDTMVAHYVLQPELRHNMDYLAEIY 468

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              + +    +ELI                            EY   D  VT ++  +LE
Sbjct: 469 --LNYQTIHIEELIG---------PKGKNQGNMRDLPPASVYEYACEDADVTLKLKNKLE 517

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   +   G  +D       ++   +   ++++E+  L 
Sbjct: 518 KELDENNVRKLFEEIEMPLIPVLAYMERNGVRIDTEALKETSRHFTLRMKQIEEEVYQLA 577

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF    +      T+T    T + VL S +       ++  +R 
Sbjct: 578 GT-EFNIASPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEVVGKILEHR- 635

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N + GR+  +      + TGR S      QN+P  +   +E  
Sbjct: 636 GLKKLLGTYIDALPQLINPETGRIHTSFNQ-TVTATGRLSSSNPNLQNIPIRNEDGKE-- 692

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I  +G     AD + IE R++A ++G+   ++
Sbjct: 693 -----------------------IRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHMIE 729

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ G+D++  T ++ + V   +VT++QR+  K     + Y               LN++
Sbjct: 730 AFQKGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIYGISV-----FGLAERLNVD 784

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +   E +   + +         E    +       +R       +++ V   
Sbjct: 785 RKEAKELIDGYFENYPHVKEYMDESIRIARERGYIETIFKR--KRYLPDINSRNAVVRGY 842

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +        G A    K   V                                  
Sbjct: 843 ---AERNAINAPIQGSAADIIKVAMV---------------------------------- 865

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                       Y   L E  +Q+       + ++                +       +
Sbjct: 866 ----------RIYQRFLKER-IQS-------KMILQVHDE-----------LNFSVLPEE 896

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M S   +    PL A+    + +
Sbjct: 897 QEKVKQIVIEEMESA--YKMKAPLLADSGWGQNW 928


>gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102]
 gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102]
          Length = 930

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 116/702 (16%), Positives = 206/702 (29%), Gaps = 157/702 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--SA 108
            +   LK  LEN  +  +  N  +++ V       DI ++     +++ +          
Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY---DIALNGIAGDSMLASYIIESHLGHG 458

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L  + E           G E I      E+      +       A     EY   D    
Sbjct: 459 LDELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYAAQDADFA 506

Query: 169 REIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L               E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQA 273
           QE  +       +    ++L+  L  + G+  + L +      +T + VL       P  
Sbjct: 567 QEAYAAAGQP-FNLNSPKQLQEILVDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  
Sbjct: 626 KIILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIR 683

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              VR    A +G  +V AD + IE R++A +
Sbjct: 684 TAEGRR-------------------------VRRAFTAPQGSIIVSADYSQIELRIMAHL 718

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     +  
Sbjct: 719 SGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYG 773

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               L ++  +     +     +     + +  +E        +   G          R 
Sbjct: 774 LAKSLGIDNISAKNFIDRYFARYPGIAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRN 831

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           K++          +A       G A    KR  + +                 R L Y D
Sbjct: 832 KNANARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLSY-D 871

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
           + +                         I+Q                    +VL      
Sbjct: 872 LKSKL-----------------------IMQ-------------VHDE---LVL------ 886

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             E P+ +       L  +M         +PL AE      +
Sbjct: 887 --EVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 926


>gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710]
 gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579]
 gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149]
 gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33]
          Length = 929

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 113/701 (16%), Positives = 206/701 (29%), Gaps = 155/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 351 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQIDLQ 400

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 401 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 458

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 459 DELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYAAQDADFAL 506

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 507 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELSRQSAELGAELMKLEQ 566

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  ++      +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 567 EAYAVAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 625

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 626 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 683

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 684 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 718

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     +   
Sbjct: 719 GDKTLITAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 773

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 774 AKSLGIDNISAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 831

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R+ +   +
Sbjct: 832 NANARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 871

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           G+                                      M         +VL    E+V
Sbjct: 872 GS-----------------------------------KLVM-QVHDE---LVL----EVV 888

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 889 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 925


>gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
 gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946]
          Length = 885

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 105/703 (14%), Positives = 207/703 (29%), Gaps = 175/703 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           +  D ET          +  Y  +  ++ F+F  ++H        H              
Sbjct: 323 VAFDTET--------NALDAY--NAKIVGFSFALNEHEAYYVPLAHHYLGVGEQIGMEEA 372

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111
            + LK+        IV  N  ++  V++  F L +    +  T+++A      S   L  
Sbjct: 373 KEALKKLF---KHKIVGQNLKYDLAVIENNFGLRLS-SSYADTMLMAWLLNPESNVGLDT 428

Query: 112 VGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           + +        K ++                +  +N+           EY   D  +T +
Sbjct: 429 LAKRFFNHDMVKFKD----------------VVSKNENFSHVPLDKACEYASEDAWMTLK 472

Query: 171 IFKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           ++ +L  +                      +   G  +D A    L +  D     L  E
Sbjct: 473 LYNKLHDMLEPRLLEIAKEVEFPFILTLMRMEKEGIKIDGAYFEALLKRTDGAIDALKHE 532

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           + +L      +    ++L T LF + GL     T+   +T + VL+      P   ++  
Sbjct: 533 IFTLCDAQ-FNLNSTQQLGTVLFEQLGLPPVKKTKTGYSTDENVLNELLDKHPSIAKILE 591

Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            R    +     +  L++    +  GR+  +    G + TGR S      QN+P  +   
Sbjct: 592 YR-ELYKLRSTYIEPLLKLSKESPLGRVHTSFIQTG-TSTGRLSSKDPNLQNIPVKTALG 649

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            E                         VR   +A EG  L+  D + IE R+LA  + ++
Sbjct: 650 RE-------------------------VRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDE 684

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +KAF  G+D++  T  + F     Q    +R++ K +   L Y  G            
Sbjct: 685 AMVKAFRDGKDIHYETALKLFG---EQEAASKRSVAKSINFGLLYGMGP----------- 730

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                               +          +R  +++      
Sbjct: 731 ---------------------------------KRLSETLGISMAEAKRYIESYFATFPT 757

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +     E+ +  + T                            +    GR   +     N
Sbjct: 758 IKAYVMEVAEQAKTT--------------------------GYVETLLGRKRFFDFEHAN 791

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDEI 632
                           Y  +    + Q  + D++   M             ++L +HDE+
Sbjct: 792 AMQY----------AGYLREAVNTVFQGSAADLIKLSMNKIMATLIHDEAKLLLQIHDEL 841

Query: 633 VCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           + E  ++   + +     +M     +A  +PLK      K + 
Sbjct: 842 IFEVVESQAQSFALEAQKVMEEI--YALRIPLKVSIAMGKNWG 882


>gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805]
 gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805]
          Length = 988

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 104/710 (14%), Positives = 204/710 (28%), Gaps = 155/710 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD---------PV 52
           + +D ET                   ++     +      +      H           V
Sbjct: 392 VAVDTETTDLNPFK----------AQLVGIGVCWGPWLSDLAYIPVGHQAPEGSQLPLEV 441

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110
           + + L   L +        N+ ++R       +  +     + TL+           +L 
Sbjct: 442 VLEQLAPWLSSPKHPKALQNAKYDRL--ILLRHGLLLGGVVMDTLLADYLRDAAAKHSLD 499

Query: 111 AVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            + E    ++     +              +    +              YC  DV +TR
Sbjct: 500 VMAERDYGITPTVFSDL-----------VGKPKDGKASCFAEVPIDQAALYCAMDVHLTR 548

Query: 170 EIFKRLEPLSSK------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           ++   L                  E  L  +   +   G  +D+    TL++ +    T+
Sbjct: 549 KLALDLREQLQTSGQQLTNLLDRVELPLEPVLALMEATGIRIDLTYLDTLSKEMGETLTR 608

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQ 272
           L+   +        +    ++L   LF   GL  +         +T   VL       P 
Sbjct: 609 LEANAKQAAGVD-FNLASPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDKLADDHPV 667

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              V  +R+  S+     ++ L + +    GR+         + TGR S      QN+P 
Sbjct: 668 VPLVLEHRV-LSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNIPI 725

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +                           S  +R   +  E   L+ AD + IE R+L  
Sbjct: 726 RTE-------------------------YSRRIRKAFLPQEHWTLLSADYSQIELRILTH 760

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++GE+   +A+  G+D++  T      +   ++T D+R +GK +   + Y  GA   Q+ 
Sbjct: 761 LSGEEVLQQAYRDGDDVHALTARLL--LDKDEITADERRLGKTINFGVIYGMGA---QRF 815

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A  TG++          +   E +     F    +         +  +G           
Sbjct: 816 ARETGVS--QAEAKEFLSKYRERYPKVFAFLELQERLALSRGYVETILG----------- 862

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                                           R  P  + +     L+   P        
Sbjct: 863 --------------------------------RRRPFHFDRNGLGRLLGKDPF------- 883

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIV 625
           ++  + +       Q  R            +Q  S DI+   M+              ++
Sbjct: 884 EIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALQQQSLPARLL 937

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           L VHDE+V E   +   +   ++   M +       +PL AE      + 
Sbjct: 938 LQVHDELVLEVEPSALEDVKALVVSTMETAVE--LSVPLVAETGSGSNWM 985


>gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans]
          Length = 903

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 101/677 (14%), Positives = 175/677 (25%), Gaps = 158/677 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERT---VLK 81
            D  V   A+ +D H               + L + L +       H    +     V  
Sbjct: 353 HDGEVRGVAW-WDGHTAYFIPFERLVQSDMRPLADWLADARRPKRTH----DSHRAEVAL 407

Query: 82  ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
               L        CT + A           L  +     L      E             
Sbjct: 408 FWHGLAFRGTS-FCTHIAAYLLDPTESRHTLADLSRRYGLPPVPEAE------------D 454

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYL 188
                 +              Y      +   +   LE               E  L   
Sbjct: 455 VYGKGAK---FKVPDRDTLARYVGRKAALVARLVPLLEADLAACGMRSLFYDLELPLSSE 511

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  VD A      + +     K+++E+  L      +    ++L   LF + G
Sbjct: 512 LAVMETVGVRVDAAALAAYGEELREAAAKVEREIYELAGTT-FNIGSTKQLGEILFDKLG 570

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+   +T   VL       P   ++ + R   ++     +  L++ +       
Sbjct: 571 LPVVKKTKTGYSTDADVLEELAPYHPIVEKILHYRQ-LTKLQSTYIEGLLKEIRPQTGKI 629

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T      + TGR S      QN+P       +                         +R
Sbjct: 630 HTYYQQTIAATGRLSSQFPNLQNIPIRLEEGRK-------------------------IR 664

Query: 366 SCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
              +    G  ++ AD + IE RVLA ++G++   +AF TG D++  T    F V+  +V
Sbjct: 665 KAFVPSEPGWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAMDVFGVSEDRV 724

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   K +                    G++    A                     
Sbjct: 725 DARMRRQAKAVNF--------------GIIYGISDFGLAQ-------------------- 750

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                  + +    S V        +  EQ   +G         
Sbjct: 751 ----------NLNISRKEAAEFIRQYFAVFSGVKAYR---ERIVEQARRDGYVTTLL--- 794

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                               GR     D+  +            R            +Q 
Sbjct: 795 --------------------GRRRYLPDINASN---YNLRSFAERTAMNTP------IQG 825

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+   M+  T+          ++L VHDE+V E P  +      L   +M S    
Sbjct: 826 TAADIIKTAMVRLTRRMRDVGLKSRMLLQVHDELVFEVPPDELDAMRELVTDVMESAVP- 884

Query: 658 AKGLPLKAE-GYESKRY 673
              +PLK +  + +  Y
Sbjct: 885 -LDVPLKVDVSWGADWY 900


>gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39]
          Length = 959

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 108/704 (15%), Positives = 207/704 (29%), Gaps = 160/704 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHD-------PV 52
             +  D ET S              D  ++     +      +      H          
Sbjct: 382 KPVAWDTETTSLEP----------RDANLVGIGCCWGSELSDLAYIPLNHTQGEMLNIEQ 431

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALK 110
           + + L+  LE+ +      N+ F+R +L     + +       T++ +          L 
Sbjct: 432 VLEALRPILESEEYPKTLQNAKFDRLIL-RSQGITLK-GVVFDTMLASYIINPESSHNLT 489

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +                L       +++  L  + K            YC  DV  T +
Sbjct: 490 DLSLRY------------LPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQ 537

Query: 171 IFKRLEPLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           I ++++ +              EQ L  +   +  +G  +D    + L+Q +      L+
Sbjct: 538 ITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGETLDNLE 597

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAI 274
           +         V +    ++L   LF    L  +    T+   +T   VL   K   P   
Sbjct: 598 KTSHQAAG-EVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVIN 656

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +   R   S+     ++ L E + SD GR+         + TGR S      QN+P  +
Sbjct: 657 SILEYR-TLSKLKSTYVDALPELVRSDTGRIHTDFNQAI-TSTGRLSSSHPNLQNIPIRT 714

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                      S  +R   I   G  LV AD + IE R+LA ++
Sbjct: 715 E-------------------------FSRQIRKAFIPESGWLLVSADYSQIELRILAHLS 749

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            E+  ++A+ T +D++  T    F      +T ++R +GK++   + Y  GA+ F     
Sbjct: 750 QEKVLIEAYNTNQDVHSLTAKLLF--DRDGITPEERRLGKIINFGVIYGMGAQRF----- 802

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              + ++  A     +    ++     +    +         +                 
Sbjct: 803 AREVGVSATAGKQFIDRFNSQYPGVFEYLESQKLAAINQGYVETI--------------- 847

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                                       +RR    +  +               L Y+D 
Sbjct: 848 --------------------------LGRRRYFEGLKGRDRD-----------RLNYQDE 870

Query: 574 GNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
              R+  N                KL          +IL             ++L VHDE
Sbjct: 871 QMLRAAANAPIQGSSADIIKIAMIKL---------AEILK-------NYQARLLLQVHDE 914

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +V E P ++       +   M +       +PL  + +    + 
Sbjct: 915 LVFEVPLSEWEELEYQIKSTMENC--LFLSVPLVVDIHAGTNWM 956


>gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491]
 gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491]
          Length = 938

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 113/701 (16%), Positives = 203/701 (28%), Gaps = 147/701 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     +   
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 775 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 832

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +     +             L     
Sbjct: 833 NTNARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 884

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                      I+Q                    +VL    E+V
Sbjct: 885 ---------------------------IMQ-------------VHDE---LVL----EVV 897

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 898 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934


>gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116]
 gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116]
          Length = 907

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 101/700 (14%), Positives = 201/700 (28%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LK 58
             + ID ET S    T            +I  +  F +             +      + 
Sbjct: 340 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKVYIEKHYII 389

Query: 59  EALEN--TDVTIV-AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVG 113
           +   N       +   N  F+  +LK      IP   +  T++ A         +L  + 
Sbjct: 390 QKFNNLFKSKPKIIGQNYKFDYKILKNNGFDPIPP--YFDTMIAAYLIDTNSKVSLDFLA 447

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E  K    K  + +++I              +N      +  +   Y   D  +T  +F 
Sbjct: 448 E--KYLMHKNIKYEDVIQ-------------KNDNFAHISLEMATSYSSEDADITFRLFN 492

Query: 174 RLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                             E     +   + + G  +D        + +  E   ++ E+ 
Sbjct: 493 VFNEKLKEDGLDKLMYEIEMPFNRVIIEMEENGIYLDKEYLKEYGKELGKELELIENEII 552

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRM 281
                   +    +++   LF    L L D  +  +T  +VL S K        +  +R 
Sbjct: 553 KSIGID-FNLNSPKQMHEVLFERLNLKLPDRMKKDSTDIKVLESLKGQHESIENLIKHRQ 611

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++      + L E +N       T      + TGR +      QN+P       +   
Sbjct: 612 -IAKLKSTYTDNLTELINYKTNRLHTNFIQTKTATGRITSINPNLQNIPIKEEKGRK--- 667

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 668 ----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKA 705

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D++  T ++ F +   ++T + R I K +                     ++   
Sbjct: 706 FENNKDIHAETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSDFR 751

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                          A E        +    ++   + ++ E  
Sbjct: 752 L------------------------------AKELGITKEEAKGFINSYFDSYPKIKEFI 781

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                    T                                S R    +++ +N     
Sbjct: 782 TNQINFVRNT--------------------------GYSETISKRRRYIKEINSNNYLER 815

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
           +      R          +I+Q  + DI+   M+         K    I+L VHDE++ E
Sbjct: 816 SA---AERIAI------NSIIQGSAADIMKIAMIKVFNEFKSKKMKSKILLQVHDEMLIE 866

Query: 636 TP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +P + +     +L ++M +   +   LPL+A     K + 
Sbjct: 867 SPIEEENETKKILKNMMETA--YTLSLPLRANIETGKSWG 904


>gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314]
          Length = 929

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 114/701 (16%), Positives = 204/701 (29%), Gaps = 154/701 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + ID ET S            A +  ++  +  F           H            
Sbjct: 350 DKIGIDTETTSLD----------AMNAALVGISIAFQAGKAVYIPVGHSLTAAPEQLDLQ 399

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 400 YVLGYLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 457

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 458 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 505

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 506 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 565

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 566 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 624

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 625 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 682

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 683 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 717

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     +   
Sbjct: 718 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 772

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 773 AKSLGIDNLSAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 830

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R LV  D+
Sbjct: 831 NANARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLVSDDL 871

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
            +                         I+Q                    +VL       
Sbjct: 872 KSKL-----------------------IMQ-------------VHDE---LVL------- 885

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P+ +  +    L  +M         +PL AE      +
Sbjct: 886 -EVPEAELDSVKEKLPQIMAKVDDGMLKVPLVAEVGVGMNW 925


>gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
 gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1]
          Length = 920

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 101/703 (14%), Positives = 205/703 (29%), Gaps = 165/703 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----- 56
             + IDFET                   +I  +F    +     D      + +      
Sbjct: 350 KLVCIDFETTGLDTFKDT----------IIGISFAIKSNEAFYLDLSGRTKIDKDKCMNL 399

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113
           + + LE  D+ ++ HN  +E  ++       I  + +  T+V A           +  + 
Sbjct: 400 VFDTLEKEDIKVIGHNLKYEYKMM-RAIGKSI-GNMYFDTMVAAYLINPTRGRYNMDDLA 457

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A             L     K         +   +     +   EY   D  VT   ++
Sbjct: 458 IAY------------LSYNTIKYADLTDNAKKTLLDAP--LKDVVEYACEDADVTFRFYE 503

Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              PL                L  +   +   G  +       L+        K  +++ 
Sbjct: 504 CFAPLLKTHNLEDLFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIY 563

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
                   + +  ++L+  LF + G+     T+   +T + VL+   +    A  +   R
Sbjct: 564 KEAG-EEFNLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYR 622

Query: 281 MRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            + ++     L+     +N   GR+  +      + TGR S      QN+P       E 
Sbjct: 623 -KYAKLKNTYLDVFPTLINEKTGRIHASFNQ-TVTATGRLSSSEPNLQNIPVRGEEGRE- 679

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R+  I  +G  L+ AD + IE R+LA  + +   +
Sbjct: 680 ------------------------IRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLV 715

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+  +D++  T  + ++V+   VT   R I K++                        
Sbjct: 716 EAFKNNDDIHRKTAMKIYSVSKEHVTASMRNIAKIIN----------------------- 752

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                F     +     + E        E   K +   +SRV  
Sbjct: 753 ---------------------FSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKP 791

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578
              E+ +                                 +    GR       + ++ +
Sbjct: 792 FCEEVVEEVRN--------------------------KGFVRTMCGRIRDLSKTINSSNA 825

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
                  +  R           ++Q  + D++   M+   K          IV+ VHDE+
Sbjct: 826 M---ARNEAERMA------LNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDEL 876

Query: 633 VCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674
           V E  + +   A  +   +M  +      +P+  + ++   + 
Sbjct: 877 VVEVSEAEADKAMTIMKEIMEHSVK--ANVPIIVDIHKGNSWG 917


>gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem]
 gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem]
          Length = 892

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 110/699 (15%), Positives = 191/699 (27%), Gaps = 157/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQVLK- 58
            ID ET S              +  V+ +A     H        H        +P+ L  
Sbjct: 317 AIDLETTSLNP----------REARVVGYAVSCRPHEARYIPVGHRYLGAPEQLPEALVL 366

Query: 59  ----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
                 L++     +  N  ++  VL      ++    W  T++ A           L A
Sbjct: 367 EILGPLLKDPARRKIGQNLKYDYQVL-RMAGFEMEGI-WCDTMLAAYLVNPARNSQGLDA 424

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                +I+                          G Y   D   T  +
Sbjct: 425 LALEY--------LDHRMISY----AEVAGSGKCELNFSEVDLDRAGPYSCEDADATYLL 472

Query: 172 FKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L P              E  L  +   +   G  +DV L   L+     +  +L+ +
Sbjct: 473 HEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSAGFGKQLIELEAQ 532

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276
           +     G   +    ++L   LF   GL +   T+     +T    L    +    A  +
Sbjct: 533 IHEHCGGP-FNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVARLL 591

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   S+      + L + ++   GR+  +      + TGR S      QN+P     
Sbjct: 592 LQYR-SISKLKSTYTDALPKLVDPATGRVHTSYNQAV-TSTGRLSSSDPNLQNIPIRGEE 649

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G  ++ AD + IE RVLA ++G+
Sbjct: 650 GRG-------------------------IRRAFIAEPGSLMLSADYSQIELRVLAHLSGD 684

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +   +AF  GED++  T +  F + P  VT + R   KV+   + Y  GA      +   
Sbjct: 685 RVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGA-----FSLAK 739

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +S  E    A +F                 +G          R    
Sbjct: 740 ELGVTPKQAKAFIDSYFERHSGARSFLDSCIREAEVCGFVTTIMGR---------RLCIP 790

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            +               +NG      +R  V                       Y   G+
Sbjct: 791 EI-------------ASKNGNVRAFAQRNAVN----------------------YPIQGS 815

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
               +     ++ R        +  I+Q                            +V E
Sbjct: 816 AADIIKAAMLRVIRRMQQERVASRLIMQ-------------VHDE-----------LVFE 851

Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +      L    M         +PLK +      +
Sbjct: 852 VPEAERDLMEELVRTEMEGALP--LSVPLKVDLNFGLNW 888


>gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442]
 gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442]
          Length = 930

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 113/702 (16%), Positives = 202/702 (28%), Gaps = 157/702 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--SA 108
            +   LK  LEN  +  +  N  +++ V       DI ++      ++ +          
Sbjct: 402 DVLGRLKPHLENPTLKKIGQNLKYDQHVFANY---DIALNGIAGDAMLASYIIESHLGHG 458

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L  + E           G E I      E+      +       A     EY   D    
Sbjct: 459 LDELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFA 506

Query: 169 REIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +   L               E  +  +   +   G  +D A     +  +  E  KL+
Sbjct: 507 LRLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE 566

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQA 273
           Q+  +       +    ++L+  LF + G+  + L +      +T + VL       P  
Sbjct: 567 QQAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLP 625

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  
Sbjct: 626 KIILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIR 683

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              VR    A +G  +V AD + IE R++A +
Sbjct: 684 TAEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHL 718

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     +  
Sbjct: 719 SGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYG 773

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               L ++  +     +     +     + +  +E        +   G          R 
Sbjct: 774 LAKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRN 831

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           K++          +A       G A    KR  + +     D                  
Sbjct: 832 KNANARA---GAERAAINAPMQGTASDLIKRAMIDVRNWLSDGI---------------- 872

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                                                    M         +VL    E+
Sbjct: 873 -------------------------------GS-----KLVM-QVHDE---LVL----EV 888

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           V    +T+       L  +M         +PL AE    + +
Sbjct: 889 V----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068]
 gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068]
          Length = 966

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 206/700 (29%), Gaps = 154/700 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------M 53
           L ID ET S                 ++ ++F + D                       +
Sbjct: 383 LVIDTETTSVQP----------RWAEIVGYSFCYRDGEAWYLPIRAPENEQALCLDATAV 432

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110
             + +  LE+  +  V  N  ++  VL     +++       T+V             L 
Sbjct: 433 ADLFRPVLEDPAIAKVGQNIKYDMVVL-RSAGIELRGAA-FDTMVADYLIDPGERSHNLD 490

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +         +  E + LI              +     +       +Y   D  V   
Sbjct: 491 ELARRH--LGHQNIEIESLI----------GTGKKQIRMDQVPLAAITDYAAEDALVPYR 538

Query: 171 IFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +   LEP   ++            L  +   +  RG  VD A    L+     + T L+ 
Sbjct: 539 LLPILEPRLEQDGLVPLFRDLEMPLVEVLAELEHRGIKVDRARLVELSTDFSTKITALEN 598

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           E+ ++      +     +L   LF +  L +   T+   +    VL    +L     +V 
Sbjct: 599 EIYAI-NHGEFNIDSRLQLAKLLFEDLKLPILKKTKTGPSMDAEVLEDLARLHELPKKVL 657

Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             R   ++     +++L E ++   GR+  +L+   A+ TGR S      QN+P  +   
Sbjct: 658 EYRH-LAKLRSTYVDSLQELIHPVTGRVHTSLKQDVAA-TGRLSSQDPNLQNIPVRTAEG 715

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
                                      +RS      EG KL+ AD + IE RVLA  +G+
Sbjct: 716 RA-------------------------IRSAFQPGIEGWKLMAADYSQIELRVLAHFSGD 750

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF +  D++    ++ + VAP  VT + R   K +   + Y              
Sbjct: 751 AALAEAFASDRDIHTQVASQVYEVAPGDVTPEMRRSAKAINFGVIYGQSP-----FGLAR 805

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         ++   ++   ++F R       +                        
Sbjct: 806 SLGIENDEAAAFISAYFAQYPGVDDFMRETLIGCRKQGYVTTI----------------- 848

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                                   A +RR V  V      N+        R      +  
Sbjct: 849 ------------------------AGRRRPVTGVRDPHAVNDKRQRTLPER------IAI 878

Query: 576 NRSYLNTTTRQLTREYTY-GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           N     +    + R       +L E  +QA         ++              DE++ 
Sbjct: 879 NTVIQGSAADIIKRAMITVHRRLKEEKLQA-------RMLLQIH-----------DELLF 920

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E P  ++     ++   M++       +PLK +      +
Sbjct: 921 EFPPEEQGQLRDLVVESMSTAEK--ISVPLKIDVKTGLNW 958


>gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568]
          Length = 937

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 112/701 (15%), Positives = 202/701 (28%), Gaps = 147/701 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 351 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 400

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 401 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 458

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 459 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIEQATEYAAQDADFAL 506

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 507 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 566

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 567 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 625

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 626 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 683

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 684 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 718

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     +   
Sbjct: 719 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 773

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G            K
Sbjct: 774 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIHNK 831

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +     +             L     
Sbjct: 832 NANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 883

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                      I+Q                    +VL    E+V
Sbjct: 884 ---------------------------IMQ-------------VHDE---LVL----EVV 896

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 897 ----ETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 933


>gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
 gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3]
          Length = 948

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 109/700 (15%), Positives = 204/700 (29%), Gaps = 142/700 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            +  D ET     L             ++  +   D+                 +   LK
Sbjct: 358 VVAFDTETDGLDALC----------AGIVGMSLCADEKQAYFIPLPESAEEATHILSPLK 407

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
           E +++  V  VAHN+ F+  VL      +        T++           +L  +    
Sbjct: 408 ELMQDERVLKVAHNAKFDLEVLTRYGLPEARP--LYDTMLAHYLIDADQGHSLDELA--- 462

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                       L+             +          +L  +Y   D  VT  +++ L 
Sbjct: 463 ----------GGLLRYDTIRYKDLSPLEIFALRTDVDPKLLCDYASEDAYVTLRLYQALH 512

Query: 177 PLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT- 226
                         E  L Y+   +  RG  +D+       Q +     +L++E++S + 
Sbjct: 513 KQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSYSS 572

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
            GL       +++   LF E  +      T+T    T +  L   + L P    + + R 
Sbjct: 573 RGLNLKVNSPKQIGELLFDELQIMEKPRKTKTGSYVTNEETLLPLRSLHPVVALILDYR- 631

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            A +     ++ L +    DG+L  +      + TGR S      QN+P  S     L +
Sbjct: 632 EARKLLNTYIDPLPKMCYPDGKLHTSYNQAV-TATGRLSSSNPNLQNIPIRSDLGRPLRR 690

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                P           +     +       G  L+ AD + +E RV+A ++ +   + +
Sbjct: 691 AFVADPYYTPRLSACAPVDHTHEK-----PIGAVLLSADYSQVELRVMAHLSQDPAMIHS 745

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F +G+D++  T A+ F VAP +VT   R+  K     +                G+    
Sbjct: 746 FLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI--------------NYGITPYG 791

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            +                                          + K +    + +    
Sbjct: 792 LSQR------------------------------LNIPVGEAAELIKEYFATFTHIQAFM 821

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           NE      +                                  GR    R++   R+   
Sbjct: 822 NEAIALATE--------------------------RGYTETAFGRRRQLRNL---RTARG 852

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635
                  R            +Q  + DI+   M+   +          +VL VHDE+V  
Sbjct: 853 AQRGNAERNAINAP------IQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELVLN 906

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAK-GLPLKAEGYESKRY 673
               +     +++   M     W +  +PL  E    K +
Sbjct: 907 VYLDELERVTALVREAMECA--WPECSVPLVVEIGTGKDW 944


>gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 952

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 99/727 (13%), Positives = 196/727 (26%), Gaps = 186/727 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET S            A    ++  +F  ++         H            
Sbjct: 353 RLIAVDTETDSLD----------AMSANLVGISFALENGEACYIPLGHKQKAQPQQADMF 402

Query: 54  ------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
                                      LK  L N ++  +  N  ++ T+      +++ 
Sbjct: 403 GDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQ 461

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 T++ + +        +  +             G + I      E          
Sbjct: 462 GVA-FDTMIESYTQNSTGRHNMDDLAARY--------LGHKTIPF----EELAGKGKNQL 508

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY-----------LDQTINDRG 196
              +       EY   D  VT ++ + L     +E EL             +   I   G
Sbjct: 509 TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIERNG 568

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             +D     T +  ++    +++  + +       +    ++L+  LF + GL +   T 
Sbjct: 569 VLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQT-FNLASTKQLQEILFEKLGLPVLKKTP 627

Query: 257 ----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311
               +T + VL    +      ++       S+      + L + +N   GR+  +    
Sbjct: 628 KGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHTSYNQA 687

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             + TGR S      QN+P  +                              +R   +A 
Sbjct: 688 V-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFVAR 721

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           EG K+V AD + IE R++A ++ ++  + AF  G+D++  T A  F V   +VT +QR  
Sbjct: 722 EGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRS 781

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   L Y            +  L +         +   + +   + F   ++E   E
Sbjct: 782 AKAINFGLIYGMS-----SFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVE 836

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSE----LWNELHQAFEQTIENGKAIIARKRRDVP 547
               +   G          R     +      L     +        G A    K   + 
Sbjct: 837 KGYVETLFGR---------RLYLPDIKSGNAILRKAAERVAINAPMQGTAADIIKVAMIG 887

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
           +    +D                                                     
Sbjct: 888 IDNAIRDN---------------------------------------------------- 895

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAE 666
           D +   M                 +V E         + ++   M    S    +PL AE
Sbjct: 896 DEIKMIM-QVHDE-----------LVFEVKADKIDHYSQLIKTEMEKAIS--LKVPLIAE 941

Query: 667 GYESKRY 673
               + +
Sbjct: 942 VGVGENW 948


>gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 952

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 99/727 (13%), Positives = 196/727 (26%), Gaps = 186/727 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET S            A    ++  +F  ++         H            
Sbjct: 353 RLIAVDTETDSLD----------AMSANLVGISFALENGEACYIPLGHKQKAQPQQADMF 402

Query: 54  ------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
                                      LK  L N ++  +  N  ++ T+      +++ 
Sbjct: 403 GDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQ 461

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 T++ + +        +  +             G + I      E          
Sbjct: 462 GVA-FDTMIESYTQNSTGRHNMDDLAARY--------LGHKTIPF----EELAGKGKNQL 508

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY-----------LDQTINDRG 196
              +       EY   D  VT ++ + L     +E EL             +   I   G
Sbjct: 509 TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIERNG 568

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             +D     T +  ++    +++  + +       +    ++L+  LF + GL +   T 
Sbjct: 569 VLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQT-FNLASTKQLQEILFEKLGLPVLKKTP 627

Query: 257 ----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311
               +T + VL    +      ++       S+      + L + +N   GR+  +    
Sbjct: 628 KGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHTSYNQA 687

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             + TGR S      QN+P  +                              +R   +A 
Sbjct: 688 V-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFVAR 721

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           EG K+V AD + IE R++A ++ ++  + AF  G+D++  T A  F V   +VT +QR  
Sbjct: 722 EGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRS 781

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   L Y            +  L +         +   + +   + F   ++E   E
Sbjct: 782 AKAINFGLIYGMS-----SFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVE 836

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSE----LWNELHQAFEQTIENGKAIIARKRRDVP 547
               +   G          R     +      L     +        G A    K   + 
Sbjct: 837 KGYVETLFGR---------RLYLPDIKSGNAILRKAAERVAINAPMQGTAADIIKVAMIG 887

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
           +    +D                                                     
Sbjct: 888 IDNAIRDN---------------------------------------------------- 895

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAE 666
           D +   M                 +V E         + ++   M    S    +PL AE
Sbjct: 896 DEIKMIM-QVHDE-----------LVFEVKADKIDHYSQLIKTEMEKAIS--LKVPLIAE 941

Query: 667 GYESKRY 673
               + +
Sbjct: 942 VGVGENW 948


>gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
 gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 100/673 (14%), Positives = 196/673 (29%), Gaps = 152/673 (22%)

Query: 29  CVILFAFGFDDHPVELWDC---VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
            ++   F  +   +   D         +   +KE LE+ ++  + H+   E    +  + 
Sbjct: 345 HILAITFSVNGEKLYYIDVRDFSDKEALLIQIKEVLEDEEIHKIGHDIKHEI---RHFYV 401

Query: 86  LDIPIHRW-ICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
            DI +      T++            ALK +     +  + M E           E    
Sbjct: 402 HDIEMKNVTFDTMIGEYLIDPAKSSYALKDLAAQY-IGQEVMSE-----------EELRG 449

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQT 191
                            +Y    V+V  +I+  ++               E  L  +   
Sbjct: 450 KGKNLISIGEAPKEDLMKYLCQRVSVIGKIYPEIKAKMQELELEKLYYEVELPLVEVLAA 509

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +  +G  VD ++   L      +   L + +  L      +    ++L   LF +  L  
Sbjct: 510 MEYKGIKVDRSMLEILEIEFGEQIDLLTKAIHEL-AETNFNINSPKQLGEVLFEKLELPP 568

Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGT 307
              T+   +T   VL   +       ++   R   ++     ++ L+  +N + GR+   
Sbjct: 569 IKKTKTGYSTNAEVLEKLQDQHDIIPKILEYRQ-VTKLKSTYVDGLLNIINPETGRIHSN 627

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                 + TGR S      QN+P        L                         R  
Sbjct: 628 FNQTVTT-TGRISSTEPNLQNIPIKLEMGRRL-------------------------RKV 661

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            +A+E  + + AD + +E RVLA +  ++  L AF   +D++  T A  F+V   +VT  
Sbjct: 662 FVANENHQFIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEEVTDS 721

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R+  K +   + Y              GL+                             
Sbjct: 722 MRSSAKAVNFGIVYGIS---------DYGLS----------------------------- 743

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                           ++    +  K+  V    +E+    EQ  + G  +         
Sbjct: 744 ------QNLNITRVKAKKYIDNYLDKYPSVKRYMDEI---VEQAHQQGYVVTLFN----- 789

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                             R     ++ +             R            +Q  + 
Sbjct: 790 ------------------RRRYLPELKSRNF---NIRSFGERMAMNTP------IQGSAA 822

Query: 608 DILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKG 660
           DI+   M+N  +          ++L VHDE++ E PD +   A  +    M         
Sbjct: 823 DIIKIAMVNVYRRLKEQGLTSKLILQVHDELIVEAPDNEVEVAIKIVRESMEEAM--NLK 880

Query: 661 LPLKAEGYESKRY 673
           + LK +   +  +
Sbjct: 881 VQLKVDLAYANNW 893


>gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
 gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213]
          Length = 952

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 99/727 (13%), Positives = 196/727 (26%), Gaps = 186/727 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET S            A    ++  +F  ++         H            
Sbjct: 353 RLIAVDTETDSLD----------AMSANLVGISFALENGEACYIPLGHKQKAQPQQADMF 402

Query: 54  ------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
                                      LK  L N ++  +  N  ++ T+      +++ 
Sbjct: 403 GDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQ 461

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 T++ + +        +  +             G + I      E          
Sbjct: 462 GVA-FDTMIESYTQNSTGRHNMDDLAARY--------LGHKTIPF----EELAGKGKNQL 508

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY-----------LDQTINDRG 196
              +       EY   D  VT ++ + L     +E EL             +   I   G
Sbjct: 509 TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIERNG 568

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             +D     T +  ++    +++  + +       +    ++L+  LF + GL +   T 
Sbjct: 569 VLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQT-FNLASTKQLQEILFEKLGLPVLKKTP 627

Query: 257 ----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311
               +T + VL    +      ++       S+      + L + +N   GR+  +    
Sbjct: 628 KGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHTSYNQA 687

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             + TGR S      QN+P  +                              +R   +A 
Sbjct: 688 V-TATGRLSSSDPNLQNIPIRNEEGRR-------------------------IRQAFVAR 721

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           EG K+V AD + IE R++A ++ ++  + AF  G+D++  T A  F V   +VT +QR  
Sbjct: 722 EGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRS 781

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   L Y            +  L +         +   + +   + F   ++E   E
Sbjct: 782 AKAINFGLIYGMS-----SFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVE 836

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSE----LWNELHQAFEQTIENGKAIIARKRRDVP 547
               +   G          R     +      L     +        G A    K   + 
Sbjct: 837 KGYVETLFGR---------RLYLPDIKSGNAILRKAAERVAINAPMQGTAADIIKVAMIG 887

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
           +    +D                                                     
Sbjct: 888 IDNAIRDN---------------------------------------------------- 895

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAE 666
           D +   M                 +V E         + ++   M    S    +PL AE
Sbjct: 896 DEIKMIM-QVHDE-----------LVFEVKADKIDHYSQLIKTEMEKAIS--LKVPLIAE 941

Query: 667 GYESKRY 673
               + +
Sbjct: 942 VGVGENW 948


>gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83]
 gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83]
          Length = 926

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 95/692 (13%), Positives = 191/692 (27%), Gaps = 149/692 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----PQVLKEA 60
             D ET S   L             ++      +           D  +      +L+  
Sbjct: 357 SFDTETDSKDALR----------ANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRPL 406

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKL 118
             +T +  V  N  ++  VL     +++   +   T++        L   +  + E L  
Sbjct: 407 FADTAIGKVGQNMKYDIQVLSRY-GIEVR-GQLFDTMIAHYLLFPDLRHNMDEMAETL-- 462

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L               +     +   +   +Y   D  +T ++++RL  +
Sbjct: 463 ----------LGYCTVHYSDLVGSDKQEVHIRQVPLQNLADYAMEDADITWQLYERLNAM 512

Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            S           E  L  +   +   G  +D  +       +  E  +++ E+  L   
Sbjct: 513 LSEAGMTSLFESIEMPLVPVLANMERSGVKLDTEVLRRTASGLGEEMQRIEDEIYRLAGH 572

Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +     ++ T LF E  +      T++    T + +L   ++  P    + + R   
Sbjct: 573 S-FNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDYR-GI 630

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     +  L E    DG+L  +     A+ TGR S      QN+P  +     L    
Sbjct: 631 KKLLSTYVEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIPIRTEVGRGL---- 685

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                R+  +        + AD + IE R++A ++ ++  ++AF
Sbjct: 686 ---------------------RAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAF 724

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             GED++  T ++ + +   +VT D R   K     + Y   A        +  LN++  
Sbjct: 725 LHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISA-----FGLSERLNISRT 779

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                       +   + +                  G   +R  +     ++ V     
Sbjct: 780 EAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGR--KRFLRDINSANAVVRGY-- 835

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +        G A                              L    +    +    
Sbjct: 836 -AERNAINAPIQGSAADLI-------------------------KLAMIRIHEEITERKL 869

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
            +R                            M+          L VHDE+       +  
Sbjct: 870 RSR----------------------------MI----------LQVHDELNFNVLRPEAA 891

Query: 643 NASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
               L    M      +  +PL AE  E   +
Sbjct: 892 EVRELVRSCMEGVMP-SLRVPLIAEIGEGANW 922


>gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
 gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14]
          Length = 949

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 96/694 (13%), Positives = 196/694 (28%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         +      +    
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN +   V  N  ++  VL+    + +       T++            +  + E 
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVK-GALFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K       +    Y   D  VT ++   L
Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDIYRYACEDADVTLKLKNVL 533

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   I   G  +D       +     +  +++QE+  L
Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIYEL 593

Query: 226 TYGLVSSSRCLEKLKTWLFLET-GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +   +     T+T    T + VL S +   P   ++  +R
Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P    + +E 
Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTSTGRLSSSNPNLQNIPIRDENGKE- 709

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  EG     AD + IE R++A ++ ++  +
Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +  D++  T A+ + +    V  D R   K     + Y               +N+
Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +   E    +                       
Sbjct: 801 DRKEAKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIF-------------------- 840

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                 ++R +P +  +           +        +      
Sbjct: 841 ---------------------HRKRFLPDINSRNAVVRGYAERNA--------INAPIQG 871

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 ++     Y    TE  +QA         M+          L VHDE+    P  
Sbjct: 872 SAADIIKVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVN 912

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +        ++   +PLKA+    K +
Sbjct: 913 EKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945


>gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6]
 gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6]
          Length = 949

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 96/694 (13%), Positives = 196/694 (28%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         +      +    
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN +   V  N  ++  VL+    + +       T++            +  + E 
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVK-GALFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K       +    Y   D  VT ++   L
Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDIYRYACEDADVTLKLKNVL 533

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   I   G  +D       +     +  +++QE+  L
Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIYEL 593

Query: 226 TYGLVSSSRCLEKLKTWLFLET-GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +   +     T+T    T + VL S +   P   ++  +R
Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P    + +E 
Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTSTGRLSSSNPNLQNIPIRDENGKE- 709

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  EG     AD + IE R++A ++ ++  +
Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +  D++  T A+ + +    V  D R   K     + Y               +N+
Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +   E    +                       
Sbjct: 801 DRKEAKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIF-------------------- 840

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                                 ++R +P +  +           +        +      
Sbjct: 841 ---------------------HRKRFLPDINSRNAVVRGYAERNA--------INAPIQG 871

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 ++     Y    TE  +QA         M+          L VHDE+    P  
Sbjct: 872 SAADIIKVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVN 912

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +        ++   +PLKA+    K +
Sbjct: 913 EKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945


>gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
 gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110]
          Length = 1023

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 97/693 (13%), Positives = 192/693 (27%), Gaps = 166/693 (23%)

Query: 27   DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66
               +   A     +        H                           L+  LE++ +
Sbjct: 447  QADLCGVALSLAPNDACYVPLAHKQSGGGAGLFDGGLAPDQVKHADAIDALRPVLESSGI 506

Query: 67   TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKM 123
              +  +  F   +L       I +       +++           L+++ E        +
Sbjct: 507  LKIGFDVKFTAVMLAQH---GITLRNTDDAQLISYVLDAGRGSHGLESLAER-WFGHAML 562

Query: 124  EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
            +EG+ L                     +               +   +++ L+P    E 
Sbjct: 563  KEGELL-----------GSGKGKITFDQVPIDKAAPLSAEGADMALRVWRVLKPRLVAEH 611

Query: 184  ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                       L  +   +  RG  +D  +   L+        +++ E++ +    V + 
Sbjct: 612  MTTVYETLERPLVAVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQEIAGEPV-NV 670

Query: 234  RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               +++   LF +  L     T+    +T  +VL    +      +      + S+    
Sbjct: 671  GSPKQIGDILFGKMSLPGGTKTKTGAWSTTAQVLDELAEQGHDLPKKILEWRQVSKLKST 730

Query: 290  KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
              + L E +N       T   L A+ TGR S      QN+P  +    +           
Sbjct: 731  YTDALPEYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK----------- 779

Query: 350  ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                          +R   IA+ G KLV AD + IE R+LA +A      +AF  G D++
Sbjct: 780  --------------IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIH 825

Query: 410  VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              T +  F V    +  + R   K +                    G++           
Sbjct: 826  AMTASEMFGVPIKGMPSEIRRRAKAINF--------------GIIYGIS----------- 860

Query: 470  SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                   A +            K + ++   +    +E      
Sbjct: 861  -------------------AFGLANQLGIAREEASAYIKKYFERFPGIRAYMDETRDF-- 899

Query: 530  QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
               ++G                             GR   Y D+  + +   +      R
Sbjct: 900  -CRQHGYVTTL-----------------------FGRKCHYPDIKASNA---SVRAFNER 932

Query: 590  EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643
                         Q  + DI+   M          K    ++L VHDE++ E PD +   
Sbjct: 933  AAINARL------QGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDAEVEA 986

Query: 644  -ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
               ++ H+M     P+    +PL  +   +K +
Sbjct: 987  TLPVVQHVMQDAPFPAVLLSVPLHVDARAAKNW 1019


>gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594]
          Length = 938

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 113/701 (16%), Positives = 203/701 (28%), Gaps = 147/701 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 402 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     +   
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 775 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 832

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +     +             L     
Sbjct: 833 NTNARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 884

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                      I+Q                    +VL    E+V
Sbjct: 885 ---------------------------IMQ-------------VHDE---LVL----EVV 897

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 898 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934


>gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism
           HF4000_APKG10H12]
          Length = 891

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 93/676 (13%), Positives = 186/676 (27%), Gaps = 152/676 (22%)

Query: 30  VILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSYFERTV 79
           V+  AF                           +   L   LE+  V  + H+   +   
Sbjct: 333 VVGLAFSTAARSASYVPLAQDGLDLTGSLDGGTVFGTLGPMLEDPQVRKIGHDLKRDMLW 392

Query: 80  LKACFNLDIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           L A    +I +      T++ +                   + +    +    +    +T
Sbjct: 393 LAAH---EIRLRGLELDTMIASYLLDATRT---------TPTVETVALEHAGYQALTADT 440

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYL 188
                 +     R        Y      +  +  + L     +E          Q L  +
Sbjct: 441 VRGKGAKAPDFDRLPPDGVLAYACERADLPLQAAEPLRARLDQERLAELYRELEQPLIPV 500

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              I   G  V        ++ +D + ++L  ++ +L      +     +L   LF +  
Sbjct: 501 LADIETAGIQVATDALAVQSRRMDADLSELQSQIYTLAG-EEFNINSPRQLSAILFEKLA 559

Query: 249 LHLEDLT-----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-G 302
           L     T      +T   VL           ++        +     ++ L + +  D G
Sbjct: 560 LPTRKKTGKTRAASTAADVLEELA-QHHALPRLVIEWRAVQKLKGTYVDALPQLVRPDTG 618

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           R+  +     A+ TGR S      QN+P  +    E                        
Sbjct: 619 RVHTSFNQAVAA-TGRLSSSDPNLQNIPIRTPLGRE------------------------ 653

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   +A +G  L+ AD + IE RVLA ++ +    +AF   ED++  T          
Sbjct: 654 -IRRAFVARDGHVLISADYSQIELRVLAHLSADTALTQAFIRNEDIHDKT---------- 702

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                                   A       +GL+ +                   N+ 
Sbjct: 703 ------------------------ALHVFGPDSGLDAHEL----------RRRAKIINYA 728

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               +     + +      A +    A+ + +  V    + +     ++ E         
Sbjct: 729 LLYGKTAFTLSRDIGVTPQAAQAFIDAYFEGYPAVRGFLDGVIDEARESGE--------- 779

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR  +  ++ N             R            +
Sbjct: 780 -----------------VRTMFGRRRLVPELRNRN---GQIRAAAERV------TVNMPI 813

Query: 603 QAVSRDILAEGMMNATKA---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658
           Q  + DIL   M++   A      ++LTVHDE++ E P  +  + + L    M       
Sbjct: 814 QGTAADILKRAMIDLAGALPPSAPMILTVHDELLIEPPRDEADSVADLVRDRMERAAD-- 871

Query: 659 KGLPLKAEGYESKRYR 674
             +PL+ +    + + 
Sbjct: 872 LTVPLRVDVGIGENWM 887


>gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482]
          Length = 949

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 98/694 (14%), Positives = 196/694 (28%), Gaps = 147/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         +      +    
Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN +   V  N  ++  VL+    + +       T++            +  + E 
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVK-GALFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K       +    Y   D  VT ++   L
Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDIYRYACEDADVTLKLKNVL 533

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           E               E  L  +   I   G  +D       +     +  +++QE+  L
Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIYEL 593

Query: 226 TYGLVSSSRCLEKLKTWLFLET-GLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +   +     T+T    T + VL S +   P   ++  +R
Sbjct: 594 AG-ETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR 652

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     ++ L + +N   GR+  +      + TGR S      QN+P    + +E 
Sbjct: 653 -GLKKLLGTYIDALPQLINPRTGRVHTSFNQ-TVTSTGRLSSSNPNLQNIPIRDENGKE- 709

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   I  EG     AD + IE R++A ++ ++  +
Sbjct: 710 ------------------------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF +  D++  T A+ + +    V  D R   K     + Y               +N+
Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV-----FGLAERMNV 800

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +   E +   + +     +   E    +       +R       +++ V  
Sbjct: 801 DRKEAKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHR--KRFLPDINSRNAVVRG 858

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                                          
Sbjct: 859 Y---AERNAINAPIQGSAADII-------------------------------------- 877

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                 ++     Y    TE  +QA         M+          L VHDE+    P  
Sbjct: 878 ------KVAMARIYQRFQTEG-IQA------K--MI----------LQVHDELNFSVPVN 912

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++     +        ++   +PLKA+    K +
Sbjct: 913 EKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945


>gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
 gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707]
          Length = 948

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 109/702 (15%), Positives = 204/702 (29%), Gaps = 142/702 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQV 56
           ++ +  D ET     L             ++  +   D+                 +   
Sbjct: 356 ISVVAFDTETDGLDALC----------AGIVGMSLCADEQQAYFIPLPESAEEAAHILSP 405

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGE 114
           LK+ +++  V  VAHN+ F+  VL          H    T++           +L  +  
Sbjct: 406 LKDLMQDERVLKVAHNAKFDLEVLTRYGL--PEAHPLYDTMLAHYLIDADQGHSLDELA- 462

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                         L+             +          +L  +Y   D  VT  ++  
Sbjct: 463 ------------GGLLRYDTIRYKDLAPQESFALRTDVDPKLLCDYASEDAYVTLRLYHA 510

Query: 175 LEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           L               E  L Y+   +  RG  +D+       Q +     +L++E++S 
Sbjct: 511 LHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSY 570

Query: 226 T-YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +  GL       +++   LF E  +      T+T    T +  L   + L P    + + 
Sbjct: 571 SSRGLNLKVNSPKQIGELLFDELKIMEKPRKTKTGNYVTNEETLLPLRSLHPVVALILDY 630

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R  A +     ++ L +    DG+L  +      + TGR S      QN+P  S     L
Sbjct: 631 R-EARKLLNTYIDPLPKMCYPDGKLHTSYNQAV-TATGRLSSSNPNLQNIPIRSDLGRPL 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
            +     P           +             G  L+ AD + +E RV+A ++ +   +
Sbjct: 689 RRAFVADPYYTPRLSACTPVDHTH-----EEPIGAVLLSADYSQVELRVMAHLSQDPAMI 743

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +F +G+D++  T A+ F VAP +VT   R+  K     +                G+  
Sbjct: 744 HSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI--------------NYGITP 789

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              +                                          + K +    + +  
Sbjct: 790 YGLSQR------------------------------LNIPVGEAAELIKEYFATFTHIQA 819

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             NE      +                                  GR    R++   R+ 
Sbjct: 820 FMNEAIALATE--------------------------RGYTETAFGRRRQLRNL---RTA 850

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIV 633
                    R            +Q  + DI+   M+   +          +VL VHDE+V
Sbjct: 851 RGAQRGNEERNAINAP------IQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELV 904

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAK-GLPLKAEGYESKRY 673
                 +     +++   M     W +  +PL  E    K +
Sbjct: 905 LNVYLDELDRVTALVREAMEGA--WPECSVPLVVEIGTGKDW 944


>gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 419

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 130/404 (32%), Positives = 202/404 (50%), Gaps = 17/404 (4%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            TL ID ET S +DL KCG+  YA+     ++LFA+ FDD   ++ D      + + +K 
Sbjct: 7   KTLAIDIETFSDVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLTEEIKN 66

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           AL +  +   A N+ FERT L     + +    W+CT V +    LP +L+ VG  L LS
Sbjct: 67  ALSDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLEGVGAVLGLS 126

Query: 120 SQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRL 175
            QK++EGK+LI  F   CK         RN P H  E W+ F  YC  DV V + I ++L
Sbjct: 127 EQKLKEGKDLIRYFCVPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVDVEKGIRQKL 186

Query: 176 E--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              P+   E   + LDQ INDRG  VD  L         + +  +      +T   + + 
Sbjct: 187 HKFPIPESEMAFYRLDQEINDRGVLVDRELVEQSITCDLLHKDIVTNRAYEVTG--LENP 244

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             + +LK WL    G+ ++ L++     ++        + ++    R+  ++++V K   
Sbjct: 245 NSVSQLKGWLSER-GVEIDSLSKGAVAELIE---DADGEVLEALKLRLLMAKTSVKKYEA 300

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT---HLPTSI 350
           +  ++ SDGR+ G LQF GA+RTGRW+G +   QNLP+   S  EL + +          
Sbjct: 301 IERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHISDLELARSLVRRGQFEELE 360

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                   ++S+ +R+  I  EG + +VAD + IEARVLAW++G
Sbjct: 361 LFYESTPNVLSELIRTAFIPKEGCRFIVADFSAIEARVLAWLSG 404


>gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319]
 gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319]
          Length = 875

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 97/678 (14%), Positives = 192/678 (28%), Gaps = 133/678 (19%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTI 68
            S   L   G  +      ++ F    ++      D             K  LE+  V  
Sbjct: 312 TSEAALIVEGYEENYHHNQLLGFGISNNNGH-YFID---KDTALSSSKFKAWLEDGRVKK 367

Query: 69  VAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
              N    RT++       +I        ++ +       A   +    KL      +  
Sbjct: 368 TVFNGK--RTIVSLKWAGHEIKGIE-HDVMIASYILNPAEANDDLATIAKLKGYHQVQSD 424

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           E +  + KG             H         Y K  +       ++ E     E  L  
Sbjct: 425 EAV--YGKGAKRSIAEADQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFEKLEMPLAI 482

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +  +G  +D A    + + +  +  K++ ++     G   +    ++L   LF + 
Sbjct: 483 VLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYE-YAGQEFNINSPKQLGVVLFEKM 541

Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGR 303
            L +   T+   +T   VL           ++   R    +     +  L + ++ SDG+
Sbjct: 542 QLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQ-LGKLQSTYIEGLKKVIHESDGK 600

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +         ++TGR S      QN+P      ++                         
Sbjct: 601 VHTRFNQ-TLTQTGRLSSVDPNLQNIPIRLEEGKK------------------------- 634

Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + S  G  +  AD + IE RVLA +A ++  + AF+   D++  T    F+V   
Sbjct: 635 IRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVERE 694

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT + R   K +                    G++    +                   
Sbjct: 695 EVTANMRRQAKAVNF--------------GIVYGISDYGLSQ------------------ 722

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                              A     + + +    V E  + +        E G       
Sbjct: 723 ------------SLGITRKAAATFIERYLKSFPGVQEYMDTI---VRDAKEKGYVTTLLH 767

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                  R     ++ +             R            +
Sbjct: 768 -----------------------RRRYLPEITSRNF---NLRSFAERTAMNTP------I 795

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           Q  + DI+ + M+   K          ++L VHDE++ E P+ +      +   +M +  
Sbjct: 796 QGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKILEKIVPEVMENAL 855

Query: 656 SWAKGLPLKAEGYESKRY 673
                +PLK +    K +
Sbjct: 856 E--LEVPLKVDYSYGKTW 871


>gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58]
 gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58]
          Length = 938

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 112/701 (15%), Positives = 202/701 (28%), Gaps = 147/701 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  L N  +  +  N  +++ V      + +        ++ +          L
Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               +                         VR    A +G  +V AD + IE R++A ++
Sbjct: 685 EEGRK-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +   
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGLIYGMG-----QYGL 774

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 832

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +     +             L     
Sbjct: 833 NANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 884

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                      I+Q                    +VL    E+V
Sbjct: 885 ---------------------------IMQ-------------VHDE---LVL----EVV 897

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 898 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934


>gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
 gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269]
          Length = 920

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 91/693 (13%), Positives = 186/693 (26%), Gaps = 147/693 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVLK 58
            L +D ET S   +          D  ++  +F  ++                 +  + K
Sbjct: 349 ILSLDTETTSTNPI----------DAELVGLSFAVEEKKAFYVPIPSNRQEAQKIVNIFK 398

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              EN D+  V  N  ++  VL     + +   +   T++            +  + E L
Sbjct: 399 PIYENPDILKVGQNLKYDLEVLHNY-GVTLK-GKMFDTMLAHYVIQPELRHNMDYMAETL 456

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              + +     ELI                K       +   EY   D  +T ++   LE
Sbjct: 457 --LNYRTIHIDELIG---------PRGKNQKSMRELDPKEVYEYAAEDADITLQLKNVLE 505

Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
               +             L  +   I   G  +D       + I+       + E+  L 
Sbjct: 506 TKLKEMECEDLFWNIEMPLMPVLAEIEMNGVVIDTDSLRETSAILTKRMQDYEHEIYQLA 565

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL   +  +P   ++   R 
Sbjct: 566 G-EEFNISSPKQVGDILFGKMKIVEKPKKTKTGQFVTSEEVLQQLENKSPIVAKILEYR- 623

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     ++ L + +N       T      + TGR S      QN+P      +E   
Sbjct: 624 GLKKLLGTYVDALPKLINPRTGHIHTSFNQAITATGRLSSSDPNLQNIPVRGEDGKE--- 680

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R C I   G     AD + IE RV+A ++ ++  ++A
Sbjct: 681 ----------------------IRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNMIEA 718

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D++  T A+ +     +VT+D+R   K     + Y               L+++ 
Sbjct: 719 FMHGYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIYG-----ITTYGLAQRLDIDN 773

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                      E +     +    + +       +        R        ++ V    
Sbjct: 774 REAKELIEGYFETFPQVYEYMERAKADARAKGYAETLFHR--RRYLPDINSHNATVRGY- 830

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +        G A    K                                     + 
Sbjct: 831 --AERNAINAPIQGSAADIIK-----------------------------------VAMI 853

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
             + +  RE  +   +                 +                +       ++
Sbjct: 854 RISDRFKRENIHSKLI-----------------LQVHDE-----------LNFSVYPDEK 885

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                +    M +   +   +PL A+      +
Sbjct: 886 EKVERIVLEEMQNA--YPLRVPLVADAGWGSNW 916


>gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
 gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs]
          Length = 894

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 104/680 (15%), Positives = 205/680 (30%), Gaps = 141/680 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDC--VHDPVMPQVLKEALENTDVTIVAHNS 73
           L             ++  A           +     +  +   LK+ LE+  + I+ H+ 
Sbjct: 330 LKTITEENNIVTDRIVALAMTTTGEIQYYIEFKDFKESDIISPLKDILEDEHIRIIGHDL 389

Query: 74  YFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSA---LKAVG-EALK---LSSQKM-E 124
             E       +  +I I   +  T+V         +   LK +  E L    +  +K+  
Sbjct: 390 KKEII---HFYPYEIHIANLYFDTMVGEYLLNPAKSSYLLKDLALEYLGEEIIDEEKIVG 446

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           +GK  ++ +   E        N          + +    D  +  +++         E  
Sbjct: 447 KGKNQLSLWAAPENEVKALLCNHVKVIAELAKYIQEKIEDQGI-HKLYY------EVELP 499

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +  ++   G  VD  +   L         KL  E+ SL      +    ++L   LF
Sbjct: 500 LVEVLASMEFLGIKVDRNMLLALEVEFKEIIDKLTSEIYSLAGIS-FNINSPKQLGEVLF 558

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS- 300
            + GL     T+   +T   VL   +       ++   R   ++     ++ L+  +N  
Sbjct: 559 EKLGLPPTKKTKTGYSTNADVLEKLQDQHEIIPKISEYRQ-VTKLKTTYVDGLLSIINPV 617

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
             R+  +      + TGR S      QN+P        L                     
Sbjct: 618 TNRIHSSFNQ-TVTATGRISSTEPNLQNIPVRLEMGRRL--------------------- 655

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               R   I+ EG + + AD + IE RVLA +A +   + AF   +D++  T +  F V 
Sbjct: 656 ----RKVFISKEGHEFIDADYSQIELRVLAHIAKDDNLIDAFIKNQDIHTRTASEIFEVP 711

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +VT   R   K +   + Y            +  LN+                     
Sbjct: 712 MEEVTSLMRGDAKAVNFGIVYGIS-----DFGLSQNLNIPVS------------------ 748

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                                  ++  +++ +K+  + E  + +    E+  E G  +  
Sbjct: 749 ---------------------KAKKYIESYFEKYPSIKEYMHNI---VEEGKEKGYVVTL 784

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                    R     ++ ++            R           
Sbjct: 785 LN-----------------------RRRYLPELKSSNF---NIRSFGERIAMNTP----- 813

Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTS 653
            +Q  + DI+   M+              ++L VHDE++ E P+ +    S +    M +
Sbjct: 814 -IQGSAADIIKIAMIAVYNRLKAENYDAKLILQVHDELIIECPENEIEEVSKILKESMEN 872

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                  +PLK +   +  +
Sbjct: 873 AIEMV--VPLKVDLSYANNW 890


>gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N]
 gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N]
          Length = 904

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 106/700 (15%), Positives = 188/700 (26%), Gaps = 161/700 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           + +D ET S  ++             ++  +   +          H             +
Sbjct: 332 VALDTETTSLDEM----------QARLVGLSMAVEPGVACYIPLAHRGPEAGTQLPKQEV 381

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111
            + L+  LE+   + + H++ ++  V      + +       T++ A          L  
Sbjct: 382 LERLRGWLEDATRSKLLHHAKYDTHVFAN-EGIALR-GVTEDTMLQAYVLESHRGVGLND 439

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L       E       +       A    G Y   D   T ++
Sbjct: 440 LAQRY------------LGRSGVNYEDLCGKGAKQIGFDEVAVDRAGFYAAEDADFTLQL 487

Query: 172 FKRLEPLSSKEQELW--------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            + L P  + E E           +   I   G  VD       +  +  E   L+Q   
Sbjct: 488 HQALRPGVTGELERIYKLELEVSRVLVAIERNGVKVDAEELGRQSHELGREMLALEQRAY 547

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279
            L      +    ++L   LF   GL +   T     +T + VLS   +  P    +   
Sbjct: 548 ELAGQP-FNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLLEY 606

Query: 280 RMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N   GR+        A  TGR +      QN+P  + +   
Sbjct: 607 R-GLSKLKSTYTDKLPRMINPATGRVHTHYSQA-AVITGRLASSDPNLQNIPVRTLAGRR 664

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    VR   +A     LV AD + IE R++A ++ +   
Sbjct: 665 -------------------------VREAFVADGDGLLVSADYSQIELRIMAHVSDDANL 699

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +AF  GED++  T A  F V   +VT +QR   K +   L Y  G          + L 
Sbjct: 700 QRAFAAGEDIHRATAAEVFGVPLPEVTSEQRRAAKAINFGLIYGMGV-----FGLASNLG 754

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +   A     +     +     +    +    E    +   G   +            + 
Sbjct: 755 ITRDAAQAYIDRYFARYPGVARYMDDTRRLAREQGYVETVFGRRLQL---------PDIR 805

Query: 519 EL----WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    K   V +      +                   
Sbjct: 806 AASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLVSQRL----------------- 848

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                          +R I+             +VL        
Sbjct: 849 ------------------------------SARLIM-----QVHDE---LVL-------- 862

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E P  +       +  LM+     A  +PL AE      +
Sbjct: 863 EVPAVELDLVRETVPRLMSEVA--ALRVPLIAEVGVGHNW 900


>gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly]
 gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly]
          Length = 922

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 98/699 (14%), Positives = 205/699 (29%), Gaps = 162/699 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MPQ 55
            + ID ET S              +  +I  +  F +                    + Q
Sbjct: 355 YIAIDTETTSIN----------VYESNIIGISVSFKEFESYYIPIETKEKNSIGKEYIIQ 404

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113
              E   N+   ++  N  F+  VLK     ++ I  +  T++ A         +L  + 
Sbjct: 405 KFNELF-NSQPKLIGQNYKFDYKVLKRH-GFNV-ISAYFDTMIAAYVIDPNTKVSLDFLA 461

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               +         + I         E +  ++         +   Y   D  +T  +F 
Sbjct: 462 AKYLM--------HKNIKY-------EEIVPQHSTLKDIPLEIASNYAAEDADITFRLFN 506

Query: 174 RLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L                E     +   + + G  +D          ++ E   ++ E+ 
Sbjct: 507 ILRKKLKEDNLESLMKNIEMPFSNVIIEMEENGIYLDSNYLTQYGHELEQELKTIENEVI 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLTPQAIQVFNNRM 281
                   +    ++L T LF +  + +      ++T  +VL + K       ++ N R 
Sbjct: 567 QSIGI-EFNLNSSKQLHTILFEKLNIIVPKNVKQDSTDIKVLETIKDQHESIEKLINYRQ 625

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++      + L+E +N       T      + TGR S      QN+P  +    +   
Sbjct: 626 -LAKLKNTYTDNLIEFINEKTNKIHTNFIQTKTATGRISSTAPNLQNIPIKNERGRK--- 681

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R+    ++G   + AD + IE  +LA ++ ++  ++A
Sbjct: 682 ----------------------IRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEA 719

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F   +D+++ T ++ F V  A +T   R I K +                     ++   
Sbjct: 720 FTHKKDIHIQTASKLFKVDEANITPSMRRIAKSIN--------------FGIIYRMSAFR 765

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            +  +                                     +    ++   +S++    
Sbjct: 766 LSQELSIK------------------------------REEAQNFIDSYFNLYSKIKTFI 795

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                  +Q                          N        R    R++ +      
Sbjct: 796 QNQIDFVKQ--------------------------NGYSETLLKRRRYIREINSQNYLER 829

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
           T      R          +I+Q  + DI+   M+              I+L VHDE++ E
Sbjct: 830 T---GAERMAI------NSIIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIE 880

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +P+ +   A ++   M  N ++   +PLK      K + 
Sbjct: 881 SPEEECEKAQIIIKEMMEN-AYPLKIPLKTNIETGKSWG 918


>gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
 gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937]
          Length = 926

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 96/700 (13%), Positives = 183/700 (26%), Gaps = 159/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   L             +I  +   +          HD              
Sbjct: 351 AFDTETDSLDPL----------QANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQAL 400

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L   L +  +  +  +  ++  V++    +++  +    TL+ +           + +
Sbjct: 401 AQLAPLLTDPALRKLGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDMDS 458

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +           G + +      E       +     + +      Y   D  +T  +
Sbjct: 459 LAKRY--------LGYDTVKY----EDVCGKGAKQIKFAQVSLEDATRYAAEDADITLRL 506

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E  L  +   I   G CVD A     +  +        Q
Sbjct: 507 HQVLGPKLSAEPGLERVYRDIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRMLAAQQ 566

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 567 KATELAGRT-FNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHELPRVI 625

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L E ++   GR+  +    GA+ TGR S      QN+P  +  
Sbjct: 626 LEYR-GLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED 683

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 684 GRR-------------------------IRRAFVAPPGRKLIACDYSQIELRIMAHLSGD 718

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++  T A  F      V+ D+R   K +   L Y   A          
Sbjct: 719 PGLVSAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSA-----FGLAR 773

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-RVKKAWRQKH 514
            L +               +    +F    ++   +    +   G         A     
Sbjct: 774 QLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINA----- 828

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    KR  V +     +           R+L+   V 
Sbjct: 829 -GSQGQRAGAERAAINAPMQGTAADIIKRAMVSVDGWIAEHAQ--------RALMILQVH 879

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           +   +                            DI                         
Sbjct: 880 DELVFE--------------------------ADI------------------------- 888

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                      S +   M +       +PL  +      +
Sbjct: 889 ----DFVDTLLSEVTARMATAAQ--LRVPLVVDSGVGDNW 922


>gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304]
          Length = 937

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 113/701 (16%), Positives = 203/701 (28%), Gaps = 147/701 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 351 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQLDLQ 400

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  LEN  +  +  N  +++ V      + +        ++ +          L
Sbjct: 401 DVLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 458

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 459 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 506

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 507 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 566

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 567 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 625

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 626 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 683

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 684 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 718

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     +   
Sbjct: 719 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 773

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 774 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPDIRNK 831

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +     +             L     
Sbjct: 832 NTNARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 883

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                      I+Q                    +VL    E+V
Sbjct: 884 ---------------------------IMQ-------------VHDE---LVL----EVV 896

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 897 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 933


>gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3]
 gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3]
          Length = 936

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 105/711 (14%), Positives = 202/711 (28%), Gaps = 172/711 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFG--FDDH-------PVELWDCVHDP---- 51
            I  ET     +             ++ F+F     D                HD     
Sbjct: 352 SISIETTCADYM----------QAKIVGFSFALQVADENSAEITIEAFYLPLAHDYIDAP 401

Query: 52  ------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                      LK  LE      V  N  F R+VL     +++        ++ +     
Sbjct: 402 AQLEYLATLDKLKPLLEKIAPQKVVFNLKFMRSVL-RLEGINLQGVA-FDPMLESYLLDS 459

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                     LK           L       E       +  P ++ + +    Y    V
Sbjct: 460 TGKHDKASLTLKY----------LQIEIASYEAIAGKGKKQLPFNQVSIKDITPYVGEHV 509

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVE 214
            ++  +   L P   K  +L  L + I              G  +D  +    +  +   
Sbjct: 510 ELSLRLHLLLWPKLEKFPKLVALYEDIELPLAIVLSDVELGGVEIDATMLGAQSVEIGKR 569

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLT 270
             ++++E   +  G   +    ++L++ LF +  L           +T + VL    +  
Sbjct: 570 LLEIEKEAY-IEAGKEFNLSSPKQLQSILFEDLELPILKKTPKGAPSTGEEVLVELAETY 628

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                V  +R   S+      + L + +N+      T      + TGR S      QN+P
Sbjct: 629 KLPKLVIEHR-GLSKLKSTYTDKLPKMINAQTGRVHTSYHQAVTVTGRLSSSDPNLQNIP 687

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
             S                              +R   IA +G K+V AD + IE R++A
Sbjct: 688 IRSEQGRR-------------------------IRQAFIAPQGYKIVAADYSQIELRIMA 722

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++ ++  L+AF TG D++  T +  F+V+  +VT +QR   K +               
Sbjct: 723 HLSQDKGLLEAFSTGLDIHKATASEVFSVSVDEVTTNQRRSAKAINF------------- 769

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G++                                  A +     +  +     +
Sbjct: 770 -GLIYGMS------------------------------AFGLAKQLKISRSDAKLYMDKY 798

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
             ++  V            +                             +    GR L  
Sbjct: 799 FHRYPGVLTYMQTTRDKARE--------------------------QGFVETILGRRLQL 832

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-------AGYD 623
             + +    L    +   R            +Q  + DI+ + M++          +   
Sbjct: 833 PHINSRNGILK---KASERAAINAP------MQGTAADIIKKAMLDVAAWVEKQAPSQVQ 883

Query: 624 IVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +++ VHDE+V    +    N + ++  +M         +PL AE      +
Sbjct: 884 LLMQVHDELVFCIKEDQVENYTCIIQEIMAKAV--ILDVPLLAEVGVGNNW 932


>gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76]
          Length = 916

 Score =  349 bits (895), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 112/701 (15%), Positives = 202/701 (28%), Gaps = 147/701 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 330 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 379

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  L N  +  +  N  +++ V      + +        ++ +          L
Sbjct: 380 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 437

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 438 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 485

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 486 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 545

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 546 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 604

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 605 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 662

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               +                         VR    A +G  +V AD + IE R++A ++
Sbjct: 663 EEGRK-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 697

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +   
Sbjct: 698 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 752

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 753 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 810

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +     +             L     
Sbjct: 811 NANARA---GAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKL----- 862

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                      I+Q                    +VL    E+V
Sbjct: 863 ---------------------------IMQ-------------VHDE---LVL----EVV 875

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 876 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 912


>gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 948

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 108/700 (15%), Positives = 202/700 (28%), Gaps = 142/700 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            +  D ET     L             ++  +   D+                 +   LK
Sbjct: 358 VVAFDTETDGLDALC----------AGIVGMSLCADEQQAYFIPLPESAEEAAHILSPLK 407

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
           + +++  V  VAHN+ F+  VL          H    T++           +L  +    
Sbjct: 408 DLMQDERVLKVAHNAKFDLEVLTRYGL--PEAHPLYDTMLAHYLIDADQGHSLDELA--- 462

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                       L+             +          +L  +Y   D  VT  ++  L 
Sbjct: 463 ----------GGLLRYDTIRYKDLAPQESFALRTDVDPKLLCDYASEDAYVTLRLYHALH 512

Query: 177 PLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT- 226
                         E  L Y+   +  RG  +D+       Q +     +L++E++S + 
Sbjct: 513 KQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSYSS 572

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
            GL       +++   LF E  +      T+T    T +  L   + L P    + + R 
Sbjct: 573 RGLNLKVNSPKQIGELLFDELKIMEKPRKTKTGNYVTNEETLLPLRSLHPVVALILDYR- 631

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            A +     ++ L +    DG+L  +      + TGR S      QN+P  S     L +
Sbjct: 632 EARKLLNTYIDPLPKMCYPDGKLHTSYNQAV-TATGRLSSSNPNLQNIPIRSDLGRPLRR 690

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                P           +             G  L+ AD + +E RV+A ++ +   + +
Sbjct: 691 AFVADPYYTPRLSACTPVDHTH-----EEPIGAVLLSADYSQVELRVMAHLSQDPAMIHS 745

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F +G+D++  T A+ F VAP +VT   R+  K     +                G+    
Sbjct: 746 FLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI--------------NYGITPYG 791

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            +                                          + K +    + +    
Sbjct: 792 LSQR------------------------------LNIPVGEAAELIKEYFATFTHIQAFM 821

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           N+      +                                  GR    R++   R+   
Sbjct: 822 NKAIALATE--------------------------RGYTETAFGRRRQLRNL---RTARG 852

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCE 635
                  R            +Q  + DI+   M+   +          +VL VHDE+V  
Sbjct: 853 AQRGNEERNAINAP------IQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELVLN 906

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAK-GLPLKAEGYESKRY 673
               +     +++   M     W +  +PL  E    K +
Sbjct: 907 VYLDELDRVTALVREAMEGA--WPECSIPLVVEIGTGKDW 944


>gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268]
 gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268]
          Length = 938

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 106/697 (15%), Positives = 199/697 (28%), Gaps = 158/697 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVLKEALEN 63
            ID ET    D     I   ++   ++ F+F F++         H     P  +      
Sbjct: 370 SIDAETLVSFDTETTSID--SKSAKIVGFSFAFNEERAYYVPLAHSYLGAPAQISSDAAK 427

Query: 64  TDV------TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEA 115
             +       +V  N  ++  ++K  FN++ P  R+  T+VLA      +   + ++   
Sbjct: 428 AAIDSLFRGYVVGQNLKYDFEIVKNNFNIE-PPARFADTMVLAWLLDPANAVGMDSISPR 486

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                     G E +           +  + +            Y   D  VT  ++ +L
Sbjct: 487 Y--------LGYETVHFGD-------VVKKGETFASVELDAATIYASEDAWVTLRLYFKL 531

Query: 176 EPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           + L                  +   +   G  +DV +   L    +     L  E+  L 
Sbjct: 532 KGLLEPALFKLAQELEFPFVRVLWQMQRCGIKIDVEMIKRLIGRNEKSLRALTDEIYELC 591

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                +     +L   LF   GL     T+   +T + VL     L P   ++ + R   
Sbjct: 592 G-EQFNINSPAQLGAVLFERLGLPAAKRTKTGYSTDESVLKDLTALHPAVGKILDYR-EL 649

Query: 284 SRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            +        L++   +D   R+R      G + TGR +      QN+P           
Sbjct: 650 FKLQSTYCEPLLQLALADAQNRVRSNFLQTG-TATGRLASKNPNLQNIPARG-------- 700

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                              +  VR C +A  G  L+  D + IE R+LA  + +   L A
Sbjct: 701 -----------------TFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSRDPALLAA 743

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F   ED++  T    F           R I K +   L                      
Sbjct: 744 FRADEDIHARTAISIFG----DAQPAHRTIAKSINFGLI--------------------- 778

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                        + +          +   + +    S + E  
Sbjct: 779 -----------------------YGMGAGKLSDSLGIARAEAKGYIERYFAAFSTIKEFL 815

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
             +    +                           +  +    GR   +       + + 
Sbjct: 816 QSIKSDAK--------------------------ADGYVSTLFGRRRYFDFANARNNMVY 849

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---KAGYDIVLTVHDEIVCETPD 638
                     +Y  +      Q  + DI+ + M++ +        ++L +HDE++ E  D
Sbjct: 850 ---------ASYEREAVNTKFQGSAADIIKKAMVDISPLLNGEARLILQIHDELIFEVRD 900

Query: 639 TDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                  +    +M S  S    +PLK     +KR+ 
Sbjct: 901 DLAQGFGARAQEIMQSAAS--LNVPLKTSLNIAKRWG 935


>gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18]
 gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902]
          Length = 930

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 203/701 (28%), Gaps = 155/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 NTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  L N  +  +  N  +++ V      + +        ++ +          L
Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           +  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 QAYA-AADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +   
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 832

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R+ +   +
Sbjct: 833 NANARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 872

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           G+                                      M         +VL    E+V
Sbjct: 873 GS-----------------------------------KLVM-QVHDE---LVL----EVV 889

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 890 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
 gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075]
          Length = 890

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 113/701 (16%), Positives = 205/701 (29%), Gaps = 159/701 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
            L ID ET S   +             ++ F+              HD            
Sbjct: 315 QLAIDTETTSLDPIR----------ADLVGFSLCVSPGLAYYAPLAHDWPADEPQAPRRQ 364

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSAL 109
              +L +AL +  +  +  N  ++  VL+    L +       T+V             L
Sbjct: 365 ALDLLGQALADPGLLKIGQNLKYDLNVLRRA-GLSVA-GPLFDTMVADYLLNPAKASHGL 422

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           +A+             G+ +I         E +  + K   +        Y   D  V  
Sbjct: 423 EAIAAEH--------LGRGVIGFE------EAVGGKGKGFAQAPPERAVPYAAEDADVAL 468

Query: 170 EIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  + L P   +          E  L  L   +   G  +D      L+  +D      +
Sbjct: 469 QAAQALGPKLDEADLRRLFDELEMPLTPLLAKMERYGVLIDAEELGRLSAELDQALAAGE 528

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAI 274
           Q++ +L      +    ++L   LF E GL     T+     +T   VL+      P   
Sbjct: 529 QKIYALAGH-EFNINSTQQLGQVLFDELGLSQVKKTKKRTAYSTDMSVLAILAAQHPLPA 587

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           +V   R   ++     ++ L   +N D GR+  +      + TGR S      QN+P   
Sbjct: 588 EVLAYR-ANAKLKSTYVDALPALINPDTGRVHTSFNQCV-TATGRLSSSDPNLQNIPVRG 645

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R C + + G+ LV AD + IE RVLA ++
Sbjct: 646 ELGRR-------------------------MRGCFVPAPGRLLVSADYSQIELRVLAHLS 680

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L+    G D++  T AR F+V P  VT++ R   K +   + Y   A      A 
Sbjct: 681 QDPLMLQDMAEGLDVHTQTAARIFDVMPGLVTREMRVRAKTVNFGVLYGMSAFRL---AR 737

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                ++    F +       +       +G          R+ 
Sbjct: 738 EQGVS--RAEAEDIIARYLGRYQGVARFQQQNLSQCRQRGYVTTILGR---------RRF 786

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              +    N   +   +  E        +     ++ +   + + +L         Y D 
Sbjct: 787 LPAI----NSSDRQAREAAERVALNTPIQGSAADIIKLAMLRVDEMLT------RHYPD- 835

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                                             ++L VHDE+V
Sbjct: 836 ------------------------------------------------SPMILQVHDELV 847

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ETP+      +  +   M         + LK +    + +
Sbjct: 848 FETPEGGVEQFAQAVRRCMEDVLK--LDVELKVDVGWGRDW 886


>gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H]
 gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H]
          Length = 944

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 106/708 (14%), Positives = 195/708 (27%), Gaps = 164/708 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------DP- 51
            +D ET S            A    ++  +             +H               
Sbjct: 358 AVDTETDSLN----------ARQANMVGLSLSVAPGKACYVPFLHETIRDLLEEDSTGEA 407

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                      + LK  L++  V  V  N+ ++ TV      +   I     T++++ + 
Sbjct: 408 FVRQLDRTEALERLKPLLQDASVLKVFQNAKYDLTVF-RGAGIP-EITPIDDTMLISYAQ 465

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   +  + E        +  G   +              +  P  + A      Y
Sbjct: 466 SAGEHGQGMDELSE--------LHLGHTPVTYDS----VTGTGRKRIPFAQVAIEAATAY 513

Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D  VT  +++ L P              E+ L  +   + D G  VD      ++  
Sbjct: 514 AAEDADVTLRLWQVLRPQLRTRQALALYEEIERPLIQILTDMEDVGIKVDATELRRMSAD 573

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN 266
                  ++QE+         +    ++L   LF E GL     T++    T   VL S 
Sbjct: 574 FAERMGTIEQEIHEQVG-RSFNVGSPKQLGEILFDEMGLPGGKRTKSGSWGTDSGVLESL 632

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
            +   +  Q      + ++      + LV+ M+ D +   T   +  + TGR S      
Sbjct: 633 AEQGHELPQKILAWRQLAKLKSTYADALVQQMDQDTQRVHTSFQMAITTTGRLSSNEPNL 692

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +                              +R   +A+ G  L+ AD + IE 
Sbjct: 693 QNIPIRTEEG-------------------------ARIRKAFVATPGCVLLSADYSQIEL 727

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +A  +  L+AF  G+D++  T +  F +    +    R   K +   + Y   A 
Sbjct: 728 RLLAHVAKIEPLLEAFRLGQDIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISA- 786

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                     L ++        ++    +     +    +E   +H       G  C   
Sbjct: 787 ----FGLAQQLQISPGEARSYIDAYFARYPGIRAYMERTKEEAKKHGYVTTPFGRRC--Y 840

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                +K+           +        G A    KR  V L                 R
Sbjct: 841 VPGITEKNGARRAY---AERQAINAPLQGGAADIIKRAMVHLA----------------R 881

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
            L    +                                        M+          L
Sbjct: 882 RLPATGLKAK-------------------------------------MV----------L 894

Query: 627 TVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE++ E  + D    +      M         + L+ E      +
Sbjct: 895 QVHDELLFEVEEQDAKALADFVRTEMEGAAK--LDVALEVETGIGPSW 940


>gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136]
          Length = 930

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 203/701 (28%), Gaps = 155/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 352 DTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  L N  +  +  N  +++ V      + +        ++ +          L
Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 460 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 507

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 508 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 567

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           +  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 568 QAYA-AADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 626

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 627 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 684

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 685 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 719

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +   
Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 832

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R+ +   +
Sbjct: 833 NANARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 872

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           G+                                      M         +VL    E+V
Sbjct: 873 GS-----------------------------------KLVM-QVHDE---LVL----EVV 889

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 890 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926


>gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
 gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489]
          Length = 929

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 109/709 (15%), Positives = 212/709 (29%), Gaps = 167/709 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-----------HD 50
             +  D ET S              +  ++ F+   +         +             
Sbjct: 349 KIVAFDTETDSLN----------THEANLVGFSLSVEKGKGIYVPVILSGGMFAPETISK 398

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH-RWICTLVLARSNGL---- 105
                VL++     ++T+V HN  F+  VL     +      +   T++ A         
Sbjct: 399 KDCLAVLEKLFAEKELTLVMHNGKFDLEVLA-ANGMSAKTECKIFDTMIAAWLLNPAASG 457

Query: 106 --PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
             P +L+ + E                    KG   + +  +N+           +Y   
Sbjct: 458 KSPYSLEFLAE---------------TKLGLKGIEFKDIVQKNQTFADVPLEKAFKYGAE 502

Query: 164 DVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           D   T +++  L+               E ++  +  ++  +G  +D    +     + V
Sbjct: 503 DSDFTLQLYYLLKDEIKKSNLEKLFYEMEMKVLPILVSMEIQGIHLDKKKLNEYKDELAV 562

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN--KK 268
             ++ ++E+         +    ++L+  LF +  L     T+   +T   VL       
Sbjct: 563 LISEKEKEIYKEAGC-EFNIASPKQLQEILFEKRNLPHGKKTKTGYSTDTAVLEELVFST 621

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P    + + R   ++     +  L    + +GR+  +    G + TGR S      QN
Sbjct: 622 NDPLPKMILDYRSY-TKLQSTYVEALPLLADKNGRIHTSFLQTG-TATGRLSSRDPNLQN 679

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P    S                            +RS   A  G  L+ AD + IE  V
Sbjct: 680 IPVRDESGRR-------------------------IRSAFTAVPGTVLISADYSQIELVV 714

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++G++    AF  G D++ +T A  + ++P QV  +QR   K +   + Y   A   
Sbjct: 715 LAHLSGDKNLCSAFINGIDVHKSTAALIYGISPEQVKPEQRRFAKTVNFGVMYGMSAFRL 774

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   LN++        +     + D + F    +    E+   +   G        
Sbjct: 775 ANE-----LNISRTEAKNFIDQYFSTYSDVKKFLDETKRMARENGYVETITGR------- 822

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
             R+    +      + Q                                          
Sbjct: 823 --RRYIPEIKSSSKIVLQGA---------------------------------------- 840

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--YDIVL 626
                   R  +NT  +          K     VQA              K+G    ++L
Sbjct: 841 -------ERIAINTPIQG---SAADIVKTAMIKVQA-----------ALEKSGTGAKMLL 879

Query: 627 TVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            VHDE++ E P+ +     S++   M +       +PL+      K + 
Sbjct: 880 QVHDELIFECPEDNAGNAISIIQREMENAVQ--LKIPLRVSVERGKNWG 926


>gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355]
          Length = 908

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 111/701 (15%), Positives = 203/701 (28%), Gaps = 155/701 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
            T+ ID ET S            A +  ++  +  F           H            
Sbjct: 330 NTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 379

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            +   LK  L N  +  +  N  +++ V      + +        ++ +          L
Sbjct: 380 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 437

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 438 DELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDADFAL 485

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 486 RLEAHLRAQMDEKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 545

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           +  +       +    ++L+  LF + G+  + L +      +T + VL       P   
Sbjct: 546 QAYA-AADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPK 604

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+P  +
Sbjct: 605 IILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 662

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 663 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 697

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F  AP  V+ +QR   K +   L Y  G     +   
Sbjct: 698 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 752

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 753 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 810

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R+ +   +
Sbjct: 811 NANARA---GAERAAINAPMQGTASDLIKRAMIDV-----------------RNCLSDGI 850

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
           G+                                      M         +VL    E+V
Sbjct: 851 GS-----------------------------------KLVM-QVHDE---LVL----EVV 867

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +T+       L  +M         +PL AE    + +
Sbjct: 868 ----ETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 904


>gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 727

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 98/720 (13%), Positives = 202/720 (28%), Gaps = 166/720 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--------VELWDCV----- 48
             L I  E       T       A +   I  AF   +            + D       
Sbjct: 122 KWLQI-LENTGSASFTIITDTVDAFNSKPIGIAFSILNQEDASLLKIETIVIDLPLIIDS 180

Query: 49  ------------HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                           +   LK+  EN  +  + HN  +++ VL+    +   I  +   
Sbjct: 181 SLEENMSPEKSISTEEILSYLKKIFENEHLLKIGHNIKYDKLVLQRYGII---IRGFEDI 237

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           ++++           +    K         K L       +       R+    + +   
Sbjct: 238 MLMSYVLDSGRYSHDIANIAK---------KWLFYDLITRKEMLKTGKRSISIDQISNSR 288

Query: 157 FGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHT 206
             EY      V  +++  L                ++ +  +   +   G  +D  L   
Sbjct: 289 IQEYVVEKSNVILQLWLLLRAKLIAEKLLHVYERLDKPMIDIVAQMETTGIQIDRQLLAQ 348

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRV 262
           ++  +  +   L++++ +L      +    ++L   LF +        T+     T  + 
Sbjct: 349 VSSEISKDLLCLEEKIHNLAG-EKFNISSPKQLGDILFTKLKFPGGTKTKKGQWKTTAQD 407

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L          I+      R S+      ++L   +N   +   T   L ++ TGR +  
Sbjct: 408 LEQINCQDNILIEHILEWRRFSKIKSTYADSLPNHINQRTQRVHTFYSLASTMTGRLASL 467

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P  +   ++                         +R   IA   KKL+ AD +
Sbjct: 468 EPNLQNIPVKTNLGKK-------------------------IRRAFIAPPTKKLISADYS 502

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA +A      +AF+   D++    +  F V   +V+   R   K +  ++ Y 
Sbjct: 503 QIELRILAHVAQINPLYQAFKNSLDIHTLVASEIFGVKIEEVSSHMRQHAKTINFSIIYG 562

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                                                             A +     + 
Sbjct: 563 ISPF--------------------------------------------RLANQLKIKRSE 578

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                + +  +   + E   +      +                          N  +  
Sbjct: 579 ATDYIQRYFDRFPGIHEYIEKTKNFARK--------------------------NSYVET 612

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619
             GR + Y ++ + +  +        R            +Q  + DI    M+   K   
Sbjct: 613 IFGRRIYYDEINSPKVSIRNL---NERAAINAP------IQGSAADITRRAMILVHKSIE 663

Query: 620 ---AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSN--PSWAKGLPLKAEGYESKRY 673
                  ++L +HDE+V E P+ +    + +    M +   P     +PLK +   S  +
Sbjct: 664 CHKLSTKMLLQIHDELVFEAPEEEIEQVTNIITESMENACLPKINLRVPLKVDIKVSDNW 723


>gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212]
 gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212]
          Length = 916

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 104/697 (14%), Positives = 195/697 (27%), Gaps = 152/697 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + ID ET S   +             ++  +F  + H       +H              
Sbjct: 341 VSIDSETTSLNPM----------QAKLVGISFCVESHHAAYLPLMHRYPGVPQQLSFDRA 390

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAV 112
            + LK  LE+     +  N  +++ V       DI ++     TL+ +            
Sbjct: 391 LKKLKPWLESATKPKLGQNLKYDKHVFANH---DIQLNGIAHDTLLQSYVLESHRPHNMD 447

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             AL+    K     +                +       A     +Y   D  +T  + 
Sbjct: 448 SLALRHLDVKTISYDD----------VTGKGVKRIGFDEVAIDTATQYAAEDADITFRLH 497

Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + L P               E  +  +   I   G  +D  L    +  +  +   L+Q+
Sbjct: 498 QALYPDIQSNAQLSHIYREIEMPILSVLFEIERNGVLLDYKLLQKQSHELGEKLHALEQQ 557

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
              ++     +    ++++  LF +  L +   T     +T + VL       P    + 
Sbjct: 558 AYDISGQP-FNLNSPKQIQEILFHQLKLPIVKKTPTGVPSTDEDVLQQLALDYPLPKLLL 616

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           N R   S+      + L   M+ +     T      + TGR +      QN+P  +    
Sbjct: 617 NYR-SLSKLKSTYTDKLPLMMDRNTGRVHTNYSQAVAVTGRLASSDPNLQNIPVRTSEGR 675

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA  G +++ AD + IE R++A ++ ++ 
Sbjct: 676 R-------------------------IREAFIAPAGYRIISADYSQIELRIMAHISQDEG 710

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAF  GED++  T A    +   QV ++QR   KV+   L Y        +    T L
Sbjct: 711 LLKAFAAGEDIHSATAAEILGIPLNQVDQEQRRHAKVINFGLIYGMS-----EFGLATQL 765

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +   A           +   E++ +  +E        +  +G      +      + R 
Sbjct: 766 GIERSAARAYMERYFARYPKVESYMQQTREKARRLGYVETVLGRRLWLPEINNANGNRR- 824

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   +A       G A    K   + +                   L    + +  
Sbjct: 825 ----QGAERAAINAPMQGTAADIIKLAMIAVHSW----------------LHKEKLHSKL 864

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                                  I+Q                    +VL        E P
Sbjct: 865 -----------------------IMQ-------------VHDE---LVL--------EVP 877

Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + +       L   M         +PL  E      +
Sbjct: 878 ENEVALIKSSLPKYMGDVLQ--LDVPLVIEIGVGDNW 912


>gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278]
 gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278]
          Length = 1034

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 99/693 (14%), Positives = 195/693 (28%), Gaps = 166/693 (23%)

Query: 27   DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66
               +   +              H                           LK  LE+T +
Sbjct: 458  QANLCGLSLALAPGEACYIPLAHRQAGDGGGLFDAGLAPDQIKESEALAALKPVLESTGL 517

Query: 67   TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKM 123
              + +N  F   VL A   + +        L+++ +         L ++ E         
Sbjct: 518  LKIGYNIKF-LAVLLAQHGITLQ--NVDDILLMSYALDAGRGSHKLDSLAE--------- 565

Query: 124  EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                 L                     + A      +      V   +++ L+P  + E+
Sbjct: 566  ---HVLAHAIISEGELIGSGKNKLTFEQVAIDRATAHAAEAADVIHRVWRVLKPRLTAER 622

Query: 184  ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                       L  +   +  RG  +D  +   L+        +++ EL+ L    + + 
Sbjct: 623  MTAVYETLERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAELQELAGEPI-NV 681

Query: 234  RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               +++   LF + GL     T+    +T   +L    +      +      + S+    
Sbjct: 682  GSPKQIGDILFGKMGLSGGTRTKTGAWSTSASILDDLAEQGNDFARKILEWRQVSKLKST 741

Query: 290  KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
              + L   +N       T   L A+ TGR S      QN+P  +    +           
Sbjct: 742  YTDALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK----------- 790

Query: 350  ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                          +R   IA+ G KLV AD + IE R+LA +A      +AF+ G D++
Sbjct: 791  --------------IRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIH 836

Query: 410  VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              T +  F V    +  + R   K +                    G++           
Sbjct: 837  AMTASEMFGVPIKDMPSEVRRRAKAINF--------------GIIYGIS----------- 871

Query: 470  SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                   A +            K + ++   +    +E  +   
Sbjct: 872  -------------------AFGLANQLGIAREEASAYIKRYFERFPGIRAYMDETREF-- 910

Query: 530  QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
               +NG  +                          GR   Y ++  + +   +      R
Sbjct: 911  -CRKNGYVVTL-----------------------FGRKCHYPEIKASNA---SVRAFNER 943

Query: 590  EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643
                         Q  + DI+   M    +A         ++L VHDE++ E P+ +   
Sbjct: 944  AAINARL------QGTAADIIRRAMTRVEEALAQKKLSAQMLLQVHDELIFEVPEDEVAA 997

Query: 644  -ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
               ++ H+M     P+    +PL  +   +  +
Sbjct: 998  TLPVVQHVMQDAPFPAVLLSVPLHVDARAADNW 1030


>gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21]
 gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21]
          Length = 892

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 109/699 (15%), Positives = 188/699 (26%), Gaps = 157/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQVLK- 58
            ID ET S              +  V+ +A     H        H        +P+ L  
Sbjct: 317 AIDLETTSLNP----------REARVVGYAASCRPHEAWYIPVGHRYLGAPEQLPESLVL 366

Query: 59  ----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
                 L++     +  N  ++  VL      ++    W  T++ A           L A
Sbjct: 367 EILGPLLKDPARRKIGQNLKYDYQVL-RIAGFELEGI-WCDTMLAAYLVNPARNSQGLDA 424

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +                +I+                          G Y   D   T  +
Sbjct: 425 LALEY--------LDHRMISY----AEVARSGKCELNFSEVDLDRAGPYSCEDADATYLL 472

Query: 172 FKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L P              E  L  +   +   G  +DV L   L+     +  +L+ +
Sbjct: 473 HEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSTGFGKQLIELEAQ 532

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQV 276
           +     G   +    ++L   LF   GL +   T+     +T    L    +    A  +
Sbjct: 533 IHEHCGGP-FNINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVARLL 591

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   S+      + L + +    GR+  +      + TGR S      QN+P     
Sbjct: 592 LQYR-SISKLKSTYTDALPKLVAPATGRVHTSYNQAV-TSTGRLSSSDPNLQNIPIRGEE 649

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G  ++ AD + IE RVLA ++G+
Sbjct: 650 GRG-------------------------IRRAFIAEPGSLMLSADYSQIELRVLAHLSGD 684

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +   +AF  GED++  T +  F + P  VT + R   KV+   + Y  GA      +   
Sbjct: 685 RVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGA-----FSLAK 739

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +S  E    A +F                 +G          R    
Sbjct: 740 ELGVTPKQAKAFIDSYFERHSGARSFLDSCIREAEVCGFVTTIMGR---------RLCIP 790

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            +               +NG      +R  V                         D+  
Sbjct: 791 EI-------------ASKNGNVRAFAQRNAVNYPIQGSAA----------------DIIK 821

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                     Q  R  +        I+Q                            ++ E
Sbjct: 822 AAMLRVNRRMQEERVAS------RLIMQ-------------VHDE-----------LIFE 851

Query: 636 TPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
            P+ +      L    M +       +PLK +      +
Sbjct: 852 VPEGERDLMEELVRTEMEAALP--LSVPLKVDLNFGLNW 888


>gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
 gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40]
          Length = 875

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 98/699 (14%), Positives = 202/699 (28%), Gaps = 169/699 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV------L 57
           +  D ET S            A+   ++ F+F F++         H  +  +        
Sbjct: 315 ISFDTETTSTD----------AKIAKIVGFSFCFNEQTSYYVPLAHSYLGVESQISMNSA 364

Query: 58  KEALENTDVTI---VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAV 112
           K A+  + +     +  N  ++  ++   F ++ P   +  T++LA  +   S+  +  +
Sbjct: 365 KWAI--SQIYKGFVIGQNLKYDFRIVANNFGIE-PPKNYSDTMILAWLDDPSSSVGMDNL 421

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            + L                  +    E +  + +       +   +Y   D  +T + +
Sbjct: 422 AKKL---------------YNYETIKFESVVKKGEDFSSVDLQSASKYASEDAWITLKFY 466

Query: 173 KRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           K       +                   +   G  +++     L    D     L  E+ 
Sbjct: 467 KTFTNKLEESMLNIAKNVEFPFILTLFDMESNGIRLNLEKLRALILRNDSALRALTTEIY 526

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
            L      +    ++L + LF    L  +  T+   +T + VLS    L P   ++   R
Sbjct: 527 ELCEQR-FNINSSKQLGSVLFDYLKLPAKKKTKTGYSTDESVLSELLDLHPSIEKILEYR 585

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +        L+     D   R    F    + TGR S      QN+P         
Sbjct: 586 -ELYKLQSTYCEPLLNLAIKDENHRVYTNFIQTGTATGRLSSKNPNLQNIPARGN----- 639

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                               ++  +R+     +G  L+  D + IE R+LA  + +   +
Sbjct: 640 --------------------LAKDMRAVFEPKDGYSLISLDYSQIELRLLAHFSCDPALI 679

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ G+D++  T    F     +     RAI K +   L Y  G+              
Sbjct: 680 EAFKNGDDIHARTAISIFG----ESNTQNRAIAKSINFGLIYGMGSNKLSN--------- 726

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                              E      + +     + +  S + +
Sbjct: 727 -----------------------------------ELSIDKKSAKEYIDRYFKAFSTIKD 751

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             + +    +                           +  +    GR   + D G     
Sbjct: 752 FLDSIKNRAKN--------------------------DGFVETLIGRKRYF-DFGGATPM 784

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---GYDIVLTVHDEIVCET 636
                        +  +      Q  + DI+   M+           ++L +HDE++ E 
Sbjct: 785 Q---------LAMFEREAVNTKFQGSAADIIKIAMIKVKDLLNDDAKMLLQIHDELIFEV 835

Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            D    + +  +  LM +    A  +PL A    +K + 
Sbjct: 836 RDEIAPSFAKNVQELMQTVV--ALNVPLVANWGMAKNWG 872


>gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245]
 gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245]
          Length = 943

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 103/696 (14%), Positives = 200/696 (28%), Gaps = 155/696 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60
            ID ET S                 +   +F                       + LK  
Sbjct: 372 AIDTETTSLD----------TFQAELAGISFSLKPKEARFIYFGKGGLDIGNTLERLKPV 421

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           LEN D+     N  ++  VLK    + +       T++ +          L  +      
Sbjct: 422 LENPDIRKTGQNLKYDLLVLKNY-GISLTPVA-FDTMLASYVLDPEEKHNLDDLAARHL- 478

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                      I      E       +             +Y   D  +   + +  E  
Sbjct: 479 ----------SIRTTTFDELTAGEGKKRTHILDVPSAQLSDYGCQDADIALRLQEVFEAK 528

Query: 179 SSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             ++Q            L  +   +  +G  +D A       +V+ +   L +++ +   
Sbjct: 529 LLEDQRLLHLCRTIEFPLVEVLAGMEYQGISIDTAHLEKTADLVNAQIGDLSRKIHAAAG 588

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    ++L   LF   GL  +  T+   +T   VL     L P    +   R    
Sbjct: 589 TP-FNLDSPKQLSGILFNTLGLPTKKTTKTGFSTNVEVLEELAPLHPIIGDLLEYR-SLQ 646

Query: 285 RSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           +     ++ L + +N   GRL  +      + TGR S      QN+P  + + +E     
Sbjct: 647 KLKTTYIDALPKMINPGTGRLHTSFNQHV-TATGRLSSSNPNLQNIPVRTTAGKE----- 700

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   I S     ++ AD + IE R+ A ++G++  ++AF
Sbjct: 701 --------------------IRRAFIPSNPDNLILSADYSQIELRIAAEISGDEKLIEAF 740

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
              ED++  T    F  +  ++T D R   K +   + Y       Q    +  LN+   
Sbjct: 741 RNREDIHRATAKVIF--STDEITSDMRRKAKEVNFGVLYG-----IQPYGLSKRLNIPQS 793

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                  +   ++    +    + E                                   
Sbjct: 794 EAKAIIETYTTKYPGLFHALLEIIEEGKRKGYVTTL------------------------ 829

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                              +RR +P +  +       +   +GR           + +NT
Sbjct: 830 -----------------LGRRRYIPDLNSRNGN----IQKAAGR-----------AAMNT 857

Query: 583 TTRQLTREYTYGGKLTENIV--QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
             +          K   N+   Q      + +           ++L VHDE++ ET   +
Sbjct: 858 PIQG---TAADIIKCAMNLCDRQ------IKK-----NNMNSVMLLQVHDELLFETTAEE 903

Query: 641 EFNASMLYHL-MTSNPSWA--KGLPLKAEGYESKRY 673
           +   S L    M     +   K +P++ +    K +
Sbjct: 904 KNRLSKLVETAMIEAAVYCGLKKVPVEVDTGTGKNW 939


>gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
 gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646]
          Length = 864

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 96/661 (14%), Positives = 181/661 (27%), Gaps = 146/661 (22%)

Query: 27  DVCVILFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           D  +I   F                  P +   LK  L +  +T + H+  + RTVL   
Sbjct: 332 DAHLIGIGFSPSRGEGFYVPAEVLEKSPEVKSDLKAVLADPGITKIIHDGKYARTVLAK- 390

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             + +       T++ A           +             G EL      G     L 
Sbjct: 391 --IGMDFVYNFDTMLAAYLLDPSKPRYDLESV-----VFDNLGVELKGTEDPGRRVAYL- 442

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
               P                     E+F  +E   S       +   +   G  VD   
Sbjct: 443 ---IPLKEIMSEKLK------SCAMEELFFGVEMPLSF------VLSDMEMTGIKVDPEK 487

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQ 260
             +L++    +  +L  E+  L      +    ++L   LF +  L +    ++   T  
Sbjct: 488 LESLSREFGEKLEELTGEIYRLAGV-EFNINSPKQLGEVLFEKLNLPVIKKKKSGYSTDA 546

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL   K   P   ++   R    +      + L+  ++       +      + TGR S
Sbjct: 547 EVLEKLKNAHPVVEKILEYRF-LMKMKSTYADGLLALVDKSTYRIHSNFNQTITATGRIS 605

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379
                 QN+P  +    +                         +R   +A      L+  
Sbjct: 606 STEPNLQNIPVKTDIGRK-------------------------IRGVFVAESPEHVLLSG 640

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA ++G++  ++AF  GED++  T +  F V P QVT   R   K +   +
Sbjct: 641 DYSQIELRVLAHLSGDEGLIEAFIKGEDIHTRTASEVFGVPPEQVTPLLRDRAKAVNFGI 700

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y              GL                                   A      
Sbjct: 701 IYGIS---------DYGL-----------------------------------AQNLGIS 716

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                   + +  ++ +V +    + +       +G                        
Sbjct: 717 TAEAREYIENYLNRYPKVRDY---IRETIRNARMSGYVTTILN----------------- 756

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-- 617
                 R     ++ +             R            +Q  + DI+   M+    
Sbjct: 757 ------RRRYIPEINSRN---YNLRSFAERVAMNTP------IQGSAADIIKVAMVKITN 801

Query: 618 ----TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672
                     +++ VHDE++ + P ++      +    M +       +PL  +  E   
Sbjct: 802 HFREYGLKAKMLIQVHDELIFDVPKSELEVVKNIVKDDMENAIP--LKVPLVVDFKEGYT 859

Query: 673 Y 673
           +
Sbjct: 860 W 860


>gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi]
 gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi]
          Length = 909

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 96/699 (13%), Positives = 201/699 (28%), Gaps = 159/699 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LK 58
             + ID ET S    T            +I  +  F +             +      + 
Sbjct: 341 NYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIETKGKIYIEKHYII 390

Query: 59  EALEN---TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVG 113
           +   N   ++  I+  N  F+  +LK      IP   +  T++ A         +L  + 
Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E  K    K  + +++I              +N      +  +   Y   D  +T  +F 
Sbjct: 449 E--KYLMHKNIKYEDVIQ-------------KNDNFANISLEMATSYSCEDADITFRLFN 493

Query: 174 RLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                             E     +   + + G  +D        + +  E   ++ E+ 
Sbjct: 494 IFTEKLKEDELYELMHEIEMPFNNVIIEMEENGIYLDKEYLKEYGKELGKELELIENEII 553

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRM 281
                   +    +++   LF +  L L +  +  +T  +VL S ++       +  +R 
Sbjct: 554 KSIGID-FNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIGNLIKHRR 612

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++      + L+E +N       T      + TGR +      QN+P       +   
Sbjct: 613 -IAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSINPNLQNIPIKDEKGRK--- 668

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R       G   + AD + IE  +LA ++ ++  +KA
Sbjct: 669 ----------------------IRKAFKPENGNIFISADYSQIELAILAHLSQDETLIKA 706

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE  +D+++ T ++ F +   +                                      
Sbjct: 707 FENNKDIHIETASKLFKIEEKE-------------------------------------- 728

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                K          + NF    + +    A E        +    ++   + ++ E  
Sbjct: 729 -----KITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFDSYPKIKEFI 783

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                  + T                                  R    +++ +N     
Sbjct: 784 INQINFVKNT--------------------------GYSETILKRRRYIKEINSNNYLER 817

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
           +      R          + +Q  + D +   M+         K    I+L VHDE++ E
Sbjct: 818 SA---AERIAI------NSTIQGSAADYMKIAMIKVFNEFKNKKMESKILLQVHDEMLIE 868

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +P  +E     +  +M    ++   LPL+A     K + 
Sbjct: 869 SPIKEENEVKKILKIMMET-AYTLNLPLRANIETGKSWG 906


>gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
 gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685]
          Length = 930

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 112/701 (15%), Positives = 198/701 (28%), Gaps = 156/701 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
            + ID ET S            A +  ++  +  F           H             
Sbjct: 352 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 401

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--SAL 109
           +   LK  LEN  +  +  N  +++ V       DI ++     +++ +          L
Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHVFANY---DIALNGIAGDSMLASYIIESHLGHGL 458

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + E           G E I      E+      +       A     EY   D     
Sbjct: 459 DELSERW--------LGLETITY----ESLCGKGAKQISFADVAIGQATEYTAQDADFAL 506

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            +   L               E  +  +   +   G  +D A     +  +  E  KL+Q
Sbjct: 507 RLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQ 566

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAI 274
           E  +       +    ++L+  LF + G+  + L +      +T + VL           
Sbjct: 567 EAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYALPK 625

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +  NR   ++      + L E +   DGR+  T     A  TGR +      QN+P  +
Sbjct: 626 IILQNR-SLAKLKSTYTDKLPEMIFPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIPIRT 683

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         VR    A +G  +V AD + IE R++A ++
Sbjct: 684 AEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIMAHLS 718

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     +   
Sbjct: 719 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 773

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++  +     +     +     + +  +E        +   G          R K
Sbjct: 774 AKSLGIDNLSAKTFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGR--RLYLPDIRNK 831

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           ++          +A       G A    KR  + +                 R L    +
Sbjct: 832 NTNARA---GAERAAINAPMQGTASDLIKRAMIDVS----------------RWLDLDGL 872

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                                   M         +VL       
Sbjct: 873 K-----------------------------------TKLIM-QVHDE---LVL------- 886

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E P  +       L  +M         +PL AE      +
Sbjct: 887 -EVPKAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 926


>gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135]
 gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135]
          Length = 919

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 96/700 (13%), Positives = 198/700 (28%), Gaps = 162/700 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MP 54
             + ID ET S              +  +I  +  F +                    + 
Sbjct: 351 NYVAIDTETTSLN----------VHEAQIIGISVSFKEFESYYIPIETKEKKTIEKAYII 400

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112
           Q   E        ++  N  F+  +LK      IP   +  T++ A         +L  +
Sbjct: 401 QKFNEFF-KAQPKLIGQNYKFDYKILKKHEFNVIPP--YFDTMIAAYVIDPNTKVSLDFL 457

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E   +         + I         E +  +N         +   Y   D  +T  +F
Sbjct: 458 AEKYLM--------HKNIRY-------EEIVAQNGTLKDIPLEMVSNYAAEDADITFRLF 502

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           K                  E     +   + + G  +D          +D E   ++ E+
Sbjct: 503 KIFTKKLKEDNLENLMTDIEMPFSNVITEMEENGIYLDKDYLRQYGYELDKELKLIENEI 562

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    ++L T LF    L L      ++T  +VL + K+      ++   R
Sbjct: 563 IKSIGI-EFNLNSTKQLHTVLFERLNLVLPQNVKQDSTDIKVLETIKEQHESIPKLIQYR 621

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              ++      + L+E +N       T      + TGR S      QN+P       +  
Sbjct: 622 Q-IAKLKNTYTDNLIEFVNEKTNKIHTNFIQTKTATGRISSTSPNLQNIPIKDEKGRK-- 678

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R      +G   + AD + IE  +LA ++ ++  ++
Sbjct: 679 -----------------------IREAFKPEKGNIFISADYSQIELVILAHLSEDESLIE 715

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+  +D+++ T ++ F V   +VT   R I K +                     ++  
Sbjct: 716 AFKNKKDIHIKTASQLFKVDEEKVTSSMRRIAKSIN--------------FGIIYRMSAF 761

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +  +                                     ++   ++   +S++   
Sbjct: 762 RLSKELSIK------------------------------REEAQKFIDSYFNLYSKIKTF 791

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                    +                          N        R    +++ +     
Sbjct: 792 IQNQIDFVRK--------------------------NGYSETLLKRRRYIKEINSQN--- 822

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
            +      R          + +Q  + DI+   M+              I+L VHDE++ 
Sbjct: 823 YSERSGAERIAI------NSTIQGSASDIMKIAMIKVYNELKSKNLKSKILLQVHDEMLI 876

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P+ +    + +   M  N ++   +PLK      K + 
Sbjct: 877 ESPEQECEEVNKIIKTMMEN-AYPLKIPLKVNIETGKSWG 915


>gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551]
 gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551]
          Length = 875

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 96/678 (14%), Positives = 190/678 (28%), Gaps = 133/678 (19%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTI 68
            S   L   G  +      ++ F     +      D             K  LE+  V  
Sbjct: 312 TSEAALIVEGYEENYHHNQLLGFGISNKNGH-YFID---KDTALSSSKFKAWLEDGRVKK 367

Query: 69  VAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
              N    RT++       +I        ++ +       A   +    KL      +  
Sbjct: 368 TVFNGK--RTIVSLKWAGHEIKGIE-HDVMIASYILNPAEANDDLATIAKLKGYHQVQSD 424

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           E +  + KG             H         Y K  +       ++ E     E  L  
Sbjct: 425 EAV--YGKGAKRSIAEAAQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFEKLEMPLAI 482

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +  +G  +D A    + + +  +  K++ ++     G   +    ++L   LF + 
Sbjct: 483 VLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYE-YAGQEFNINSPKQLGVVLFEKM 541

Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGR 303
            L +   T+   +T   VL           ++   R    +     +  L + ++ SDG+
Sbjct: 542 QLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQ-LGKLQSTYIEGLKKVIHESDGK 600

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +         ++TGR S      QN+P      ++                         
Sbjct: 601 VHTRFNQ-TLTQTGRLSSVDPNLQNIPIRLEEGKK------------------------- 634

Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   + S     +  AD + IE RVLA +A ++  + AF+   D++  T    F+V   
Sbjct: 635 IRGAFVPSQPDWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVERE 694

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT + R   K +                    G++    +                   
Sbjct: 695 EVTSNMRRQAKAVNF--------------GIVYGISDYGLSQ------------------ 722

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                              A     + + +    V E  + +        E G       
Sbjct: 723 ------------SLGITRKAAATFIERYLKSFPGVQEYMDTI---VRDAKEKGYVTTLLH 767

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                  R     ++ +             R            +
Sbjct: 768 -----------------------RRRYLPEITSRNF---NLRSFAERTAMNTP------I 795

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           Q  + DI+ + M+   K          ++L VHDE++ E P+ +      +   +M +  
Sbjct: 796 QGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKILEKIVPEVMENAL 855

Query: 656 SWAKGLPLKAEGYESKRY 673
                +PLK +    K +
Sbjct: 856 E--LEVPLKVDYSYGKTW 871


>gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium]
          Length = 916

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 103/697 (14%), Positives = 202/697 (28%), Gaps = 154/697 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMPQ 55
            D ET S   +          +  ++ + F  D          HD               
Sbjct: 343 FDLETTSLDYM----------NAAIVGWVFLVDK-DSFYVPVGHDYLDAPKQLDFDDALL 391

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            LK  L++  +  V  N  ++  VL     +D+       T+V +          +V   
Sbjct: 392 TLKPILQDESINKVGQNLKYDAHVLANYQ-IDLNGIS-DDTMVKSYVLN------SVATR 443

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             +    M     L  +            +    ++        Y   DV VT E+ K L
Sbjct: 444 HNMDDLSM---HYLNHQTIHFSDVAGKGKKQITFNQVGLEAAFPYACEDVIVTHELNKVL 500

Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +    +              L  +   +   G  +D  L +     V  +  ++  +   
Sbjct: 501 DEDIVQYPKLVKLYQVLEMPLIKVLLRMERNGVEIDAGLLNAQQLDVVKQMNEIQSQAFE 560

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL------HLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
           L      +    ++++  LF E GL             +T +  L       P    + +
Sbjct: 561 LAGDA-FNLESPKQIQQILFSEEGLGLEAKKKTPKGAPSTNEEALKLL--DHPLVDLILS 617

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++     L  L + ++ + +   T      + TGR S      QN+P  +     
Sbjct: 618 YR-TLTKLNSTYLEALPKQIDLNTKRLHTSYHQAVTATGRLSSSNPNLQNIPIRTE---- 672

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                +   +R   IA +G  ++ AD + IE R++A ++ ++  
Sbjct: 673 ---------------------LGARIRGAFIAGKGNVIIAADYSQIELRIMAHISQDKSL 711

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF    D++  T +  FNV   +V KD R   K +   L Y   A           +N
Sbjct: 712 IEAFNNDVDVHSATASMMFNVPIEEVNKDHRRNAKAINFGLIYGMSA-----FGLAKQIN 766

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           ++        ++  E +    N+   ++E        +  +G           Q +++  
Sbjct: 767 VSRTEAKQYIDAYFENYPGVLNYMDNIREAAKVQGYVETIMGRRLYLP-----QINAKNK 821

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            L     +        G +    K+  + +     D N                      
Sbjct: 822 MLQQHALRTAINAPMQGSSADIIKKAMLDVHEWIGDGN---------------------- 859

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET-P 637
                                        D +   M             VHDE+V E   
Sbjct: 860 -----------------------------DEIKMIM------------QVHDELVFEVNA 878

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
              +  A+ +  LM +   +   +PL  +      ++
Sbjct: 879 SKADEFANKIQELMANA--YQLDIPLVVDVGIGDSWQ 913


>gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1]
 gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1]
          Length = 922

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 99/699 (14%), Positives = 205/699 (29%), Gaps = 162/699 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MPQ 55
            + ID ET S              +  +I  +  F +                    + Q
Sbjct: 355 YIAIDTETTSIN----------VYESNIIGISVSFKEFESYYIPIETKEKNSIGKDYIIQ 404

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVG 113
              E   N+   ++  N  F+  VLK     ++ I  +  T++ A         +L  + 
Sbjct: 405 KFNELF-NSQPKLIGQNYKFDYKVLKRH-GFNV-ISAYFDTMIAAYVIDPNTKVSLDFLA 461

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               +         + I         E +  ++         +   Y   D  +T  +F 
Sbjct: 462 AKYLM--------HKNIKY-------EEIVPQHSTLKDIPLEIASNYAAEDADITFRLFN 506

Query: 174 RLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L                E     +   I + G  +D          ++ E   ++ E+ 
Sbjct: 507 ILRKKLKEDNLESLMKNIEMPFSNVIIEIEENGIYLDSNYLTQYGHELEQELKTIENEVI 566

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLTPQAIQVFNNRM 281
                   +    ++L T LF +  + +      ++T  +VL + K       ++ N R 
Sbjct: 567 QSIGI-EFNLNSSKQLHTILFEKLNIIVSKNVKQDSTDIKVLETIKDQHESIEKLINYRQ 625

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++      + L+E +N       T      + TGR S      QN+P  +    +   
Sbjct: 626 -LAKLKNTYTDNLIEFINEKTNKIHTNFMQTKTATGRISSTAPNLQNIPIKNERGRK--- 681

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R+    ++G   + AD + IE  +LA ++ ++  ++A
Sbjct: 682 ----------------------IRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEA 719

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F   +D+++ T ++ F V  A +T   R I K +                     ++   
Sbjct: 720 FTHKKDIHIQTASKLFKVDEANITPSMRRIAKSIN--------------FGIIYRMSAFR 765

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            +  +                                     +    ++   +S++    
Sbjct: 766 LSQELSIK------------------------------RDEAQNFIDSYFNLYSKIKTFI 795

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                  +Q                          N        R    R++ +      
Sbjct: 796 QNQIDFVKQ--------------------------NGYSETLLKRRRYIREINSQNYLER 829

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
           T      R          +I+Q  + DI+   M+              I+L VHDE++ E
Sbjct: 830 T---GAERMAI------NSIIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIE 880

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +P+ +   A ++   M  N ++   +PLK      K + 
Sbjct: 881 SPEEECEKAQIIIKEMMEN-AYPLKIPLKTNIETGKSWG 918


>gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1]
          Length = 944

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 107/697 (15%), Positives = 194/697 (27%), Gaps = 152/697 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----DPVMPQVL 57
             + +D ET S              +  +   +   +                    ++L
Sbjct: 371 RHIAVDTETTSLD----------TFEAELAGISIAVETGKARFISFAQSALDRDKTVEIL 420

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K  LEN  +  +  N  ++  VLK    +++       T++ +          L  +   
Sbjct: 421 KPLLENPSLPKIGQNLKYDMLVLKKY-GIELSPVA-FDTMLASYVLNPEEKHNLDDLAA- 477

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     EL+                +           +Y   D  +  ++    
Sbjct: 478 -HHLGYRTTTFDELV----------GTGKTKQHIFEVDPEKLSDYACQDADLALQLEGVF 526

Query: 176 EPLSSKEQELWY-----------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                 E EL +           +   +   G C+D       ++ V  E   L + + +
Sbjct: 527 RKKLDGETELLWLCENIEFPLVTVLAEMEYAGICIDTHHLEKASERVKKELELLTETIYA 586

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
                  +    ++L   LF    L  +  T+   +T   VL     L P A  +   R 
Sbjct: 587 AAGSA-FNIDSPKQLAHILFDLLALPPKKRTKTGYSTNVEVLEELATLFPIARDLLEYR- 644

Query: 282 RASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N   GRL  T      + TGR S      QN+P  S   +E  
Sbjct: 645 SLQKLKSTYIDALPKMVNPLTGRLHTTFNQFI-TATGRLSSSNPNLQNIPIRSPLGKE-- 701

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  +R   I S     L+ AD + IE R+ A ++G+   L
Sbjct: 702 -----------------------IRRAFIPSTPENWLLSADYSQIELRIAAEISGDPQLL 738

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF   ED++  T    F+    ++T D R   K +   + Y            +  LN+
Sbjct: 739 EAFRNREDIHTATAKVIFDT--DEITSDMRRKAKEVNFGVLYG-----IMPFGLSRRLNI 791

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    ++   ++       + +     E       +G          R  +     
Sbjct: 792 PQKEAKAIIDTYISKYPGLFKALQEIIVTGREKGYVTTILGRRRYLADLNSRNTN----- 846

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           L     +A   T   G A    K                 + L S R             
Sbjct: 847 LKKAAERAAMNTPIQGTAADIIKC---------------AMNLCSSRMRHLN-------- 883

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                                         +   M          +L VHDE++ ET D 
Sbjct: 884 ------------------------------MKSVM----------LLQVHDELLFETTDA 903

Query: 640 DEFNASMLYHL-MTSNPSWA--KGLPLKAEGYESKRY 673
           ++   S L    M         K +P+  +    K +
Sbjct: 904 EKEPLSKLVEQAMIDAAIRCGLKNVPVLVDTGIGKNW 940


>gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 932

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 106/699 (15%), Positives = 197/699 (28%), Gaps = 154/699 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + ID ET S            A +  ++  +  F+          H              
Sbjct: 355 IGIDTETTSLD----------AMNAQLVGISIAFEAGEAAYIPLGHSMTAAPQQLDLQDT 404

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111
              LK  LEN  +  +  N  +++ V      + +        ++ +          L  
Sbjct: 405 LGRLKPHLENGSLKKIGQNLKYDQHVFANY-GIALRGIA-GDAMLASYIVESHLGHGLDE 462

Query: 112 VGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           + E  L L +                E+      +       A     EY   D      
Sbjct: 463 LSERWLGLPTITY-------------ESLCGKGAKQISFADVAVEQAAEYAAQDADFALR 509

Query: 171 IFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +   L             + E  +  +   +   G  +D A     +  +     KL+++
Sbjct: 510 LEAHLRAQMDEKQLEMYLNLELPVAQVLFEMERNGVHIDRAELAAQSSELGAALLKLEEQ 569

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLTPQAIQ 275
               T G   +    ++L+  LF + G+  + L +      +T + VL       P    
Sbjct: 570 AFQ-TAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTASGGISTNEAVLEQLAPDYPLPKI 628

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  NR   ++      + L E +N       T      + TGR +      QN+P  +  
Sbjct: 629 ILENR-SLAKLKSTYTDKLPEMINPRTGRVHTTYSQAVAITGRLASSNPNLQNIPIRTAE 687

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       VR    A  G  +V AD + IE R++A ++G+
Sbjct: 688 GRR-------------------------VRRAFTAPAGSLIVSADYSQIELRIMAHLSGD 722

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     +     
Sbjct: 723 KTLMAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAK 777

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L ++  +     +     +     + +  +E        +   G          R K++
Sbjct: 778 SLGIDNLSAKNFIDRYFARYPGVAEYIQRTKEEAAAQGYVETLFGR--RLYLPDIRAKNA 835

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    KR  + +                   L    + +
Sbjct: 836 NARA---GAERAAINAPMQGTASDLIKRAMIAVSS----------------RLHSDGLES 876

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                    I+Q                    +VL    E+V  
Sbjct: 877 KL-----------------------IMQ-------------VHDE---LVL----EVV-- 891

Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
             + +       L  +M         +PL AE      +
Sbjct: 892 --ENELETVKEMLPQVMAEVAQGRLNVPLLAEVGVGGNW 928


>gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 900

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 108/676 (15%), Positives = 188/676 (27%), Gaps = 149/676 (22%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFE 76
              V   A   +          H             +  V+   L + ++  V H+  F 
Sbjct: 341 SAHVCGVALACEPGQAVYVPLGHRYLGAPAQLSMSDIDAVMGPLLADPELPKVGHDVKFC 400

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFC 134
             +L     + + +     T++ +          L  + E         E G ++     
Sbjct: 401 EVILLRH-RIGL-VGVSFDTMLASYLLDPEGKNQLHELAER--------ELGAKMQTLDE 450

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQE 184
                     R              Y      V   +  RL P              E  
Sbjct: 451 VAPKRRGQAQRALDE--IELGEASSYGAAFADVALSLTDRLRPRLRAEKLEDLLVQIELP 508

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   +   G  VD      L   +  E   L+Q+   +    + +    ++L+  LF
Sbjct: 509 LSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREIVGHDI-NLASPKQLEAVLF 567

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            E  L  +  T+   +T   VL +  +  P    V  +R   ++     ++ L   ++  
Sbjct: 568 DELKLRSQRKTKTGRSTDADVLEALSEEHPFPGVVLEHR-AIAKLKGTYVDALPRLVHPG 626

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
                T      + TGR S      QN+P  +                            
Sbjct: 627 TGRIHTRWGQAVAATGRLSSQDPNLQNIPIRTELGR------------------------ 662

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A  G  +V AD + IE RVLA ++ +   + AF TG+D++V T    F V  
Sbjct: 663 -MIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRTGQDVHVRTAMEIFGVDQ 721

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A VT + R   K +   + Y              G+  +  A  +               
Sbjct: 722 AGVTAEMRRRSKTINFGVIY--------------GMGESALAKRLDI------------- 754

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                  R   A+  ++  V E         +            
Sbjct: 755 -----------------SRAEAARFIDAYFARYRGVHEFMEGTMAEAK------------ 785

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
             R   +  +   +  L  +  S R                   Q  R            
Sbjct: 786 --RSESVRTLLGRRRLLPDLRSSDRMR---------------RAQAERIAQNTP------ 822

Query: 602 VQAVSRDILAEGMMNATKA---GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSW 657
           +Q  + D+L   M+   +    G  +VLTVHDE+  E P      A   +   M S    
Sbjct: 823 IQGTAADLLKLAMVRVPRPVVPGARMVLTVHDELAFEVPAEAVDEAKAKVREAMESVFP- 881

Query: 658 AKGLPLKAEGYESKRY 673
              +PL  +      +
Sbjct: 882 -LDVPLVVDVGHGPTW 896


>gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97]
          Length = 879

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 94/699 (13%), Positives = 213/699 (30%), Gaps = 167/699 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMPQV 56
            +  D ET               ++  ++ F+F   ++        H        +  + 
Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVSKQISLES 367

Query: 57  LKEALENT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113
            K+A+E   +  ++ HN  ++  +++  F L++P  ++  T++LA          +  + 
Sbjct: 368 AKKAIELIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMDDLA 426

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L+L + +    + L+              + +           +Y   D  +T   + 
Sbjct: 427 --LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYL 471

Query: 174 RLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                            E +   +   + + G  +D      L +  + E   L +E+ +
Sbjct: 472 YFLKNLEIPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEALMKKFENEIKILSEEIYT 531

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
           L      +    +++   LF +  L      +   +T ++VL +     P   ++ + R 
Sbjct: 532 LCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLHALLDKHPVITKILDYR- 589

Query: 282 RASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             ++        L++    + + R+  +    G + TGR S      QN+P   +  ++ 
Sbjct: 590 ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY 648

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                    +SC +A +G      D + IE R+LA  + ++  L
Sbjct: 649 -------------------------KSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   ED++  T    F     +   + R++ K +   L Y  G               
Sbjct: 684 NAFTNDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG--------------- 724

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                        +   +          +   + + +  + + +
Sbjct: 725 -----------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKK 755

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            +  +    +Q                          N  +   SGR   +         
Sbjct: 756 YFETVKNEAKQ--------------------------NGFITTLSGRKRYFDFENAKPMQ 789

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCET 636
                        Y  +   +I+Q  + DI+   M+   K       ++L +HDE++ E 
Sbjct: 790 ----------IAMYERESINSILQGSAADIIKLAMLEINKELNEDKKLILQIHDELIFEV 839

Query: 637 PDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            D    N       +M +       + LK     +K + 
Sbjct: 840 KDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876


>gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265]
 gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265]
          Length = 940

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 110/700 (15%), Positives = 208/700 (29%), Gaps = 154/700 (22%)

Query: 1   MA--TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMP 54
           M    + +D ET S   L  C       +  +   +                        
Sbjct: 364 MKATLVAVDTETTS---LKTC-------EAELAGISLSATPATASFISFARTGLSREKTI 413

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
           ++L+  LEN  +     N  ++  VLK    L++       T++ +          L  +
Sbjct: 414 ELLRPLLENPAIAKTGQNLKYDLLVLKNY-GLELSPIS-FDTMLASYLLNPETTHNLDDL 471

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                           L  R  K +                 R   +Y   D  +   + 
Sbjct: 472 AARH------------LKLRTTKYDELTGTGKTKLHIDDVEPRKLTDYACQDADIALRLT 519

Query: 173 KRLEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             L+   ++E             L  +   +  +G  +D       ++ V  +  +L + 
Sbjct: 520 AILQKELAEEPNLRHIGETLEFPLISVLGAMESQGISIDTRHLAATSESVGTQLLQLKET 579

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           + S       +    ++L   LF   GL  +  T+   +T   VL     L P    +  
Sbjct: 580 IHSAAG-ESFNIDSPKQLSRILFEVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVGNLLE 638

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            R    +     ++ L + +N   GR+  +      + TGR S      QN+P  +    
Sbjct: 639 YR-SLQKIKTTYIDALPKMLNPRTGRVHTSFNQHI-TATGRLSSSNPNLQNIPIRTPLGR 696

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396
           E                         +R   I       L+ AD + IE R+ A ++G+ 
Sbjct: 697 E-------------------------IRKAFIPTDPRNLLLSADYSQIELRIAAEISGDG 731

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF   ED++  T    F+     +T D R   K +   + Y       Q    +  
Sbjct: 732 KLIEAFRNREDIHSATARVIFDTP--DITPDMRRKAKEVNFGVLYG-----IQPFGLSKR 784

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           LN+         ++   ++         ++    E       +G          R+    
Sbjct: 785 LNIPRSEAADIISTYTAKYPGLFEALDTIKTTGREKGFVTTLLGR---------RRYLPN 835

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +S     L +A E+   N            P+     D     ++L S R          
Sbjct: 836 LSSRNGNLQKAAERAAMN-----------TPIQGTAADIIKCAMILCSKR---------- 874

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE- 635
                               + E+ +Q+         M+          L VHDE+V E 
Sbjct: 875 --------------------MKEHDMQSS--------ML----------LQVHDELVFET 896

Query: 636 TPDTDEFNASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
           TP+  E  ++++   M         K +P++ +    K +
Sbjct: 897 TPEEQENLSALVEEAMIEAAGMCGMKTVPVEVDCGTGKNW 936


>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae]
          Length = 920

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 102/703 (14%), Positives = 208/703 (29%), Gaps = 165/703 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----- 56
             + IDFET                   +I  +F    +     D      + +      
Sbjct: 350 KLVCIDFETTGLDTFKDT----------IIGISFAIKSNEAFYLDLSGRTKIGKDKCMNL 399

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113
           + + LE  D+ ++ HN  +E  ++K      I  + +  T+V A           +  + 
Sbjct: 400 VFDTLEKEDIKVIGHNLKYEYKMMK-AIGKSI-GNMYFDTMVAAYLINPTRGRYNMDDLA 457

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A             L     K         +   +     +   EY   D  VT   ++
Sbjct: 458 IAY------------LSYNTIKYSDLTDNAKKTLLDAP--LKDVVEYACEDADVTFRFYE 503

Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              PL                L  +   +   G  +       L+        K  +++ 
Sbjct: 504 CFAPLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIY 563

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
           +       + +  ++L+  LF + G+     T+   +T + VL+   +    A  +   R
Sbjct: 564 AEAG-EEFNLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYR 622

Query: 281 MRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            + ++     L+     +N   GR+  +      + TGR S      QN+P       E 
Sbjct: 623 -KYAKLKNTYLDVFPTLINEKTGRIHASFNQ-TVTATGRLSSSEPNLQNIPVRGEEGRE- 679

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R+  I  +G  L+ AD + IE R+LA  + +   +
Sbjct: 680 ------------------------IRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALV 715

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+  +D++  T  + ++V+   VT   R I K++                        
Sbjct: 716 EAFKNNDDIHRKTAMKIYSVSKEHVTASMRNIAKIIN----------------------- 752

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                F     +     + E        E   K +   +SRV  
Sbjct: 753 ---------------------FSIIYGKTAFGLSKELGIKKKEAEDFIKGYSSTYSRVKP 791

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578
             +E+ +                                 +    GR       + ++ +
Sbjct: 792 FCDEVVEEVRN--------------------------KGFVRTMCGRIRDLSKTINSSNA 825

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
                  +  R           ++Q  + D++   M+   K          IV+ VHDE+
Sbjct: 826 M---ARNEAERMA------LNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDEL 876

Query: 633 VCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674
           V E  + +   A  +   +M  +      +P+  + ++   + 
Sbjct: 877 VVEVSEAEADKAMTIMKEIMEHSVK--ANVPIIVDIHKGNSWG 917


>gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
 gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563]
          Length = 926

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 101/703 (14%), Positives = 208/703 (29%), Gaps = 165/703 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-----HDPVMPQV 56
             + +DFET         G+  + +   +I  +F    +     D              +
Sbjct: 356 KLVCVDFETT--------GLDVFKD--TIIGISFAIRSNEAFYLDVSGRTNIDKDKCIDM 405

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG 113
           + E L   D+ ++ HN  +E  ++    N     + +  T+V A           +  + 
Sbjct: 406 VFETLAKEDIKVIGHNLKYEYKMM-RAINKSF-GNMYFDTMVAAYLINPTRGRYNMDDLA 463

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            A             L     K         +         +   EY   D  +T   ++
Sbjct: 464 IAY------------LSYNTIKYSDITDNAKKTLL--DVPLKDVVEYACEDADITFRFYE 509

Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              PL                L  +   +   G  +       L+        K  +++ 
Sbjct: 510 CFAPLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISSEKMKALSDEYSSLLEKTKKKIY 569

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
           +       + +  ++L+  LF + G+     T+   +T + VL+   +    A  +   R
Sbjct: 570 AEAG-EEFNIQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYR 628

Query: 281 MRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            + ++     L+     +N   GR+  +      + TGR S      QN+P       E 
Sbjct: 629 -KYAKLKNTYLDVFPTLINEKTGRIHASFNQ-TVTATGRLSSSEPNLQNIPVRGEEGRE- 685

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R+  IA +G  L+ AD + IE R+LA  + +   +
Sbjct: 686 ------------------------IRNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALV 721

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+  +D++  T  + ++V+   VT   R I K++                        
Sbjct: 722 EAFKNNDDIHRKTAMKIYSVSKEHVTASMRNIAKIIN----------------------- 758

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                F     +     + E        E   K +   +SRV  
Sbjct: 759 ---------------------FSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKP 797

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNNRS 578
              E+ +                                 +    GR       + ++ +
Sbjct: 798 FCEEVVEEVRN--------------------------KGYVRTMCGRIRDLSKTINSSNA 831

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEI 632
                  +  R           ++Q  + D++   M+   K          IV+ VHDE+
Sbjct: 832 M---ARNEAERMA------LNTLIQGSAADMIKVAMVAIHKEFKNHFKTAKIVMQVHDEL 882

Query: 633 VCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674
           V E  + +   A  +   +M  +      +P+  + ++   + 
Sbjct: 883 VVEVSEKEADKAMTIMKEIMEHSVK--TNVPITVDIHKGNSWG 923


>gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740]
 gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes]
          Length = 898

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 110/704 (15%), Positives = 195/704 (27%), Gaps = 170/704 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET S                 ++ F+F  +          H        +  + 
Sbjct: 330 VVAFDTETDSLE----------TRSAKLVGFSFSLEGEVGYYVPVAHSYLGAGDQVSLEE 379

Query: 57  LKEALENT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG 113
            + A+E      +V HN  F+  +L        P  R   +++LA       P  L    
Sbjct: 380 ARGAIEKIFSAQVVGHNLKFDLEILHGALGF-YPKGRIGDSMILAWLLDSGAPVGLD--- 435

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                   K   G E+I         E +  + +   + A     EY   D   T  ++ 
Sbjct: 436 -----FQMKRWFGHEMIPF-------EKMVKKGETFAQVALEEAAEYAGEDALATYRLYF 483

Query: 174 RLEPLSSKE-------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           RLE    K                  +    + +RG  VD      LN  V+V   +L  
Sbjct: 484 RLEEELKKRGCESLLGLAESLEFPFIHTLIEMEERGIRVDTEFFARLNAEVEVRIRELSG 543

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           E+ +   G   +    ++L   LF +  L     T+   +T ++VLS    + P    + 
Sbjct: 544 EVFAHAGG-EFNLNSTQQLGGVLFEKLHLPSGKKTKTGYSTDEKVLSELLGVHPIIEPIL 602

Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             R    +     +  L      D  R   T      + TGR S      QN+P  + + 
Sbjct: 603 EYR-ELFKLKSTYIEPLTRFALQDKNRRIYTSFLHTGTSTGRLSSKNPNLQNIPVKTEAG 661

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +                         +R   IASEG  L+  D + IE R+LA  + + 
Sbjct: 662 RK-------------------------IRQGFIASEGNLLISLDYSQIELRLLAHFSQDP 696

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF+ G D++  T  + F     +  K  R I K +   L                 
Sbjct: 697 ALVAAFKAGADIHYETAKKIFG---EREAKAHRGIAKTINFGLI---------------- 737

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                             + +          +    ++      
Sbjct: 738 ----------------------------YGMGSRKLSETLRISPKEAKGYIDSYFASFPT 769

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V        +   +        +  +RR        + +                     
Sbjct: 770 VKSFLKAQEEFALE--HGYTETLLGRRRYFEFQQAPEYQK-------------------- 807

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-----IVLTVHDE 631
                           Y  +    I Q  + D++   M    +         ++L VHDE
Sbjct: 808 --------------AAYLREAVNCIFQGSAADLIKLAMNEIRRRFAQEESLWLLLQVHDE 853

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++ E P       +  L  +M         +PL+      + + 
Sbjct: 854 LIFEAPKEHAEALARELALVMEGIHP--LRVPLQCGISLGEHWG 895


>gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
 gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453]
          Length = 926

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 103/697 (14%), Positives = 201/697 (28%), Gaps = 151/697 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMP 54
             + +D ET S   +T            ++  +  F           H          + 
Sbjct: 352 RQIGLDTETNSLDPMT----------AKLVGISMAFAAGDAVYIPVAHTLAEQLDWQEIS 401

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112
             LK  LE+ ++  +  N  +++ + K    +D+        ++ +          L  +
Sbjct: 402 GSLKPFLEDKNLAKIGQNLKYDQHIFKNH-GIDLQGIA-GDAMLASYIVESHLSHNLDDL 459

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                        G E I+     E+      +             EY   D      I 
Sbjct: 460 AMRW--------LGLETISY----ESLCGKGAKQISFADVNVAQATEYACQDADFALRIE 507

Query: 173 KRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + L               E  +  +   +   G  +D A     +  +  E  +L+Q+  
Sbjct: 508 QHLRTQMDAQQIEIYENMELPVAQVLFQMERAGVHLDCAELAQQSTELGTELLQLEQQAY 567

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLE------DLTETTCQRVLSSNKKLTPQAIQVF 277
            L      +    ++L+  LF + G+  +          +T + VL       P    + 
Sbjct: 568 DLAGQP-FNLNSPKQLQEILFNQLGIPTKGVKKTAKGGYSTDESVLEKLADDYPLPKLIL 626

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            NR   ++      + L E +N       T      + TGR +      QN+P  ++   
Sbjct: 627 QNR-SLAKLKSTYTDKLPEMINPQTGRVHTNYAQAVAITGRLASNNPNLQNIPIRTKQGR 685

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR    A +G  +V AD + IE R++A ++G+  
Sbjct: 686 R-------------------------VRRAFNAPDGYLIVSADYSQIELRIMAHLSGDAT 720

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
              AF+  ED++  T A  F VAP ++T +QR   K +   L Y  G     +      L
Sbjct: 721 LQAAFQNNEDVHRRTAAEVFGVAPEKITLEQRRYAKTINFGLIYGMG-----EYGLAKSL 775

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            ++  +  +        +     + +  +E+  +    +   G               R 
Sbjct: 776 GIDNVSAAMFIKRYFARYTGVAEYMQRTKEHAQQFGFVETLFGRKLYLPDIHSNHAMKR- 834

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                   +A       G A    K+                             +  ++
Sbjct: 835 ----AGAERAAINAPMQGTASDLIKKAM---------------------------IDVSK 863

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
             +N  +R               ++Q                    +VL VH        
Sbjct: 864 FLMNQKSRL--------------VMQ-------------VHDE---LVLEVH-------- 885

Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +++       L  +M+   +    +PL AE    K +
Sbjct: 886 ESELDWIQIKLPEIMSQVGAEVLNVPLLAEVGVGKNW 922


>gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46]
 gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46]
          Length = 935

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 93/694 (13%), Positives = 194/694 (27%), Gaps = 149/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            L +D ET     +          D  ++  +F   ++         +      + +  +
Sbjct: 364 ILALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAEREEAIKIVREFE 413

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              +N     V  N  ++  VL+    +++   +   T+V            +  + E  
Sbjct: 414 PVFKNEKSLKVGQNIKYDMLVLQNY-GIEVR-GKLFDTMVAHYVLQPELRHNMDYLAEIY 471

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +    +ELI                K     + +    Y   D  VT ++   LE
Sbjct: 472 LH--YQTIHIEELIG---------PKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILE 520

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       ++        +++E+ +L 
Sbjct: 521 QELKKNDAEKLFYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTL- 579

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL S +       ++   R 
Sbjct: 580 AEGEFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYR- 638

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N   GR+  +      + TGR S      QN+P      +E  
Sbjct: 639 GLKKLLSTYIDALPQLINPKTGRIHTSFNQ-TVTATGRLSSSNPNLQNIPIRDEDGKE-- 695

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I  +G     AD + IE R++A ++ ++  + 
Sbjct: 696 -----------------------IRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 732

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ + V   +VT D R   K     + Y               +N++
Sbjct: 733 AFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISV-----FGLAERMNVD 787

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +   E +   +++     +   EH   +       +R       +++ V   
Sbjct: 788 RKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHR--KRFLPDINSRNAVVRGY 845

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +        G A    K                                      
Sbjct: 846 ---AERNAINAPIQGSAADIIKV------------------------------------- 865

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
               R   R    G K               + ++                +    P  +
Sbjct: 866 -AMARIYERFKAEGLKA--------------KMILQVHDE-----------LNFSVPAKE 899

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M     +   +PLKA+      +
Sbjct: 900 KEIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 931


>gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 964

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 194/694 (27%), Gaps = 149/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            L +D ET     +          D  ++  +F   ++                + +  +
Sbjct: 393 ILALDTETTGTDPM----------DAELVGMSFSIAENQAFYIPVPAGREEATKIVREFE 442

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              +N     V  N  ++  VL+    ++I   R   T+V            +  + E  
Sbjct: 443 SVFKNDKSLKVGQNIKYDMLVLQNY-GIEIR-GRLFDTMVAHYVLQPELRHNMDYLAEIY 500

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +    +ELI    KG          K     + +    Y   D  VT ++   LE
Sbjct: 501 LH--YQTIHIEELIGPRGKG---------QKNMRDLSPKDVYLYACEDADVTLKLKNILE 549

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       ++        +++E+ +L 
Sbjct: 550 QELKKNDAEKLFYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLA 609

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL S +       ++   R 
Sbjct: 610 G-EEFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYR- 667

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N   GR+  +      + TGR S      QN+P      +E  
Sbjct: 668 GLKKLLSTYIDALPQLINPRTGRIHTSFNQ-TVTATGRLSSSNPNLQNIPIRDEDGKE-- 724

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I  +G     AD + IE R++A ++ ++  + 
Sbjct: 725 -----------------------IRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMID 761

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ + V   +VT D R   K     + Y               +N++
Sbjct: 762 AFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISV-----FGLAERMNVD 816

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +   E +   + +     +   EH   +       +R       +++ V   
Sbjct: 817 RKEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHR--KRFLPDINSRNAVVRGY 874

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +        G A    K                                      
Sbjct: 875 ---AERNAINAPIQGSAADIIKV------------------------------------- 894

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
               R   R    G K               + ++                +    P  +
Sbjct: 895 -AMARIYERFKAEGLKA--------------KMILQVHDE-----------LNFSVPVKE 928

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M     +   +PLKA+      +
Sbjct: 929 KEIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 960


>gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381]
 gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 98/702 (13%), Positives = 213/702 (30%), Gaps = 171/702 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPV 52
             +  D ET S              +  ++ F+F +D+         H         D  
Sbjct: 313 KEIAFDTETTSVDS----------HNAKIVGFSFCWDEKSSFYVPLAHSYLGAPDMLDKN 362

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LK 110
           + + L EA+    +  +  N  ++  +++  F L+ P  ++  T++LA      ++  + 
Sbjct: 363 IAKRLIEAIYTKFI--IGQNLKYDFRIVRNNFGLN-PPAKYADTMILAWLMDPDNSVGMD 419

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + +        +                E +  + +       +    Y   D  +T +
Sbjct: 420 NLAKRY-FDYDTI--------------KFENVVKKGENFSSVDVKNAANYASEDAWITLK 464

Query: 171 IFKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            +K+   + S E              +   + + G  +D++    +   +  +   L  E
Sbjct: 465 FYKKFCGILSTELLDLAKNLEFPFIKVLLNMEENGIKMDISSLKEMINEIAEQLKILTNE 524

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           +  L+     +    ++L   LF   GL  +  T+   +T +  LS+  +L     ++  
Sbjct: 525 IYDLSG-ENFNINSTKQLGEVLFEHLGLPAKKKTKTGYSTNESALSAISELHAVVPKILA 583

Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            R    +        L+     N + R+       G + TGR S      QN+P      
Sbjct: 584 YR-ELYKLQSTYTEPLLALALKNDENRIFSNFLQTG-TSTGRLSSKNPNLQNIPAHG--- 638

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                  ++  +R+C ++ +G   V  D + IE R+LA  + ++
Sbjct: 639 ----------------------SMAVQMRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDK 676

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L+AF   ED++  T    F  +     K++RA+ K +   L                 
Sbjct: 677 ELLRAFREDEDIHSRTAISIFGTS----DKEKRAVAKTINFGLI---------------- 716

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                             + + E     +  +   + + +  + 
Sbjct: 717 ----------------------------YGMGASKLSNELGISRSDAKDYIEKYFKAFAS 748

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +      L    +   +NG                             GR   +      
Sbjct: 749 IKNFMENLKSEAK---KNGYTTTL-----------------------FGRKRYFDFANAT 782

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---KAGYDIVLTVHDEIV 633
                           Y  +      Q  + DI+ + M+  +        ++L +HDE++
Sbjct: 783 PMQF----------AMYERESVNTKFQGSAADIIKKAMVEISPFLNENTRLLLQIHDELI 832

Query: 634 CETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            E  D    +    +  +M +       +PLK     +KR+ 
Sbjct: 833 FEVRDDMSESFGKKMQEIMQNVVK--LNVPLKTSLSINKRWG 872


>gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1]
 gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1]
          Length = 911

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 103/701 (14%), Positives = 185/701 (26%), Gaps = 158/701 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----------DPVM 53
            +D ET                   ++  +  +           H              +
Sbjct: 335 AVDTETTDLHP----------HSAELVGISIAWQPMVAYYIPVGHALDAAPEGQLPRADV 384

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALK 110
              LK  LE+ ++     N  ++  + K    + +       +++ +           L 
Sbjct: 385 LAALKPLLESPEIGKTGQNIKYDYQIFKRYH-ITMQGIE-RDSMLYSYLLYGANRAHNLD 442

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           A+              +EL     K E       +     +    L   Y   D  VT +
Sbjct: 443 AIAT------------EELGRTTIKFEDVAGKGRKRIRFDQVPLHLAAPYACEDAEVTWQ 490

Query: 171 IFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
               + P   +E           + L  +   +   G  VD  +  T++      R +L 
Sbjct: 491 AAASMAPNLDREPGLKRLYETIERPLIPVLAEMEYAGVLVDRDVLSTMSADFSKRRARLV 550

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQV 276
           +E+  L    V +    ++L   LF + G+     T++   T   VLS       +  Q 
Sbjct: 551 EEIHELAG-EVFNVNSTQQLGHILFEKMGIKGGKRTKSGFSTDVSVLSKLADDGEKIPQQ 609

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                  ++      + LV  ++   GR+  +      + TGR S      QN+P  +  
Sbjct: 610 VLAYRSLTKLQSTYTDALVALIHPYTGRVHTSYNQAV-TLTGRLSSSDPNLQNIPIRTEE 668

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R+  IA  G  L+ AD + IE RVLA M   
Sbjct: 669 GRA-------------------------IRTAFIAPAGWSLLAADYSQIELRVLAHMGNV 703

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF  G D++  T A  F V  AQVT + R + K +   L Y              
Sbjct: 704 SRLKEAFHAGLDIHAATAAELFGVPLAQVTGEHRRMAKTINFGLVYGMSP-----FGLAK 758

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L +         +     ++           +   H   +   G  C       R  ++
Sbjct: 759 RLGIQNNEARAYMDLYFARYDGVRQHMDATIRDARAHGFVETLGGRRCPI-----RDINA 813

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
               L     +        G A    K   + L    +                      
Sbjct: 814 TQRSLREFAERTAINAPLQGSASDLIKLAMIRLHGALQAGGF------------------ 855

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVC 634
                                                 M+         +VL V      
Sbjct: 856 -----------------------------------KARMVLQVHDE---LVLEV------ 871

Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
             PD +      +    M    +    +PL  +    + + 
Sbjct: 872 --PDKELAAVKEVVRSCMEGVMT--LSIPLVVDMGVGQNWG 908


>gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114]
 gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114]
          Length = 935

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 195/705 (27%), Gaps = 157/705 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
             + ID ET S            A +  ++  +  F           H            
Sbjct: 351 DKIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQIDLQ 400

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW----ICTLVLARSNGLP- 106
            +   LK  LEN+ +  +  N  +++ V      + +            ++ +       
Sbjct: 401 DVLGRLKPHLENSALKKIGQNLKYDQHVFANY-GIALNGIALNGIAGDAMLASYIIESHL 459

Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              L  + E           G E I      E+      +       A     EY   D 
Sbjct: 460 GHGLDELSERW--------LGLETITY----ESLCGKGAKQIGFADVAIGQATEYAAQDA 507

Query: 166 TVTREIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
                +   L               E  +  +   +   G  +D A     +  +  E  
Sbjct: 508 DFALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELM 567

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKKLT 270
           KL+QE  +       +    ++L+  LF + G+  + L +      +T + VL       
Sbjct: 568 KLEQEAYAAAGQP-FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDY 626

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           P    +  NR   ++      + L E ++  DGR+  T     A  TGR +      QN+
Sbjct: 627 PLPKIILQNR-SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNI 684

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                              VR    A +G  +V AD + IE R++
Sbjct: 685 PIRTAEGRR-------------------------VRRAFTAPQGSVIVSADYSQIELRIM 719

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++G++  + AF+ GED++  T A  F +AP  V+ +QR   K +   L Y  G     
Sbjct: 720 AHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG----- 774

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           +      L ++  +     +     +     + +  +E        +   G         
Sbjct: 775 QYGLAKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGR--RLYLPD 832

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
              K++          +A       G A    KR  + +                     
Sbjct: 833 IHNKNANARA---GAERAAINAPMQGTASDLIKRAMIDVSCWLDSDGLK----------- 878

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                                                       M         +VL V 
Sbjct: 879 ----------------------------------------TKLIM-QVHDE---LVLEV- 893

Query: 630 DEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  P+ +       L  +M         +PL AE      +
Sbjct: 894 -------PEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 931


>gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium]
          Length = 898

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 103/671 (15%), Positives = 193/671 (28%), Gaps = 148/671 (22%)

Query: 29  CVILFAFGFDDHPVELWDCV---HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
            +   A    D  V   +      + ++   LKE  +N ++  + HN       +     
Sbjct: 346 RLSGLALCTGD-EVFYIETGTALPENLIATELKELWQNENIHKIGHNIK---EFITWLLK 401

Query: 86  LDIPIHR-WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            D+ ++  +  T++                        +   K L       +       
Sbjct: 402 HDVELNGLYFDTMIAEYLIDSIRN--------GYPIASLSH-KYLNRSVPSLDELLGKGK 452

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTIND 194
             K           +Y   +V    +I+   + +  + +           L  +  ++  
Sbjct: 453 GAKKYSEIPPERLKDYSAYNVKAIFDIWPMQKKVLQENRQEELFNDIELPLITVLASMEY 512

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G+ VD A  H   +++      L++ +  L      +    ++L T LF +  L +   
Sbjct: 513 HGFKVDAAKLHEYGEVLLSRIKDLEKVIYMLAG-EEFNINSTKQLGTILFEKLKLPVVKS 571

Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQF 310
           T+   +T   VL            +   R   ++        L + +N   G++  +   
Sbjct: 572 TKTGYSTDVEVLEELYYKHDIIPCIIEYRQ-LTKLYTTYAEGLEKVINPVTGKIHSSFNQ 630

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P       E                         +R   I 
Sbjct: 631 -TVTATGRISSTEPNLQNIPVRHEMGRE-------------------------IRKAFIP 664

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            SE    V AD + IE RVLA + G++  + AF  GED++  T +  F+VAP  VT + R
Sbjct: 665 SSENAVFVDADYSQIELRVLAHITGDEALINAFVKGEDIHTATASLVFDVAPEDVTPELR 724

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y               L +         +    ++   + +   +    
Sbjct: 725 RKAKAVNFGIVYGIS-----DYGLARDLGITRKEAKRYIDDYFAKYPKVKTYVDEIVRVG 779

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            E    +                                             +RR +P +
Sbjct: 780 QEQGYVETLF-----------------------------------------HRRRYLPEL 798

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
             K                        R  +NT                   +Q  + DI
Sbjct: 799 ASKNFHQRSF---------------GKRVAMNTP------------------IQGTAADI 825

Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           +   M+   KA         ++L VHDE+V ET + +      L    M         +P
Sbjct: 826 IKIAMVKVYKALKESGLKSRLILQVHDELVIETFEDELETVKELVKKCMEEAVE--LSVP 883

Query: 663 LKAEGYESKRY 673
           L  +    K +
Sbjct: 884 LVVDVSIGKNW 894


>gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343]
 gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5]
 gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R]
          Length = 941

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 93/694 (13%), Positives = 194/694 (27%), Gaps = 149/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            L +D ET     +          D  ++  +F   ++         +      + +  +
Sbjct: 370 ILALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAEREEAIKIVREFE 419

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              +N     V  N  ++  VL+    +++   +   T+V            +  + E  
Sbjct: 420 PVFKNEKSLKVGQNIKYDMLVLQNY-GIEVR-GKLFDTMVAHYVLQPELRHNMDYLAEIY 477

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +    +ELI                K     + +    Y   D  VT ++   LE
Sbjct: 478 LH--YQTIHIEELIG---------PKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILE 526

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       ++        +++E+ +L 
Sbjct: 527 QELKKNDAEKLFYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTL- 585

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL S +       ++   R 
Sbjct: 586 AEGEFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYR- 644

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N   GR+  +      + TGR S      QN+P      +E  
Sbjct: 645 GLKKLLSTYIDALPQLINPKTGRIHTSFNQ-TVTATGRLSSSNPNLQNIPIRDEDGKE-- 701

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I  +G     AD + IE R++A ++ ++  + 
Sbjct: 702 -----------------------IRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 738

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ + V   +VT D R   K     + Y               +N++
Sbjct: 739 AFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISV-----FGLAERMNVD 793

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +   E +   +++     +   EH   +       +R       +++ V   
Sbjct: 794 RKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHR--KRFLPDINSRNAVVRGY 851

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +        G A    K                                      
Sbjct: 852 ---AERNAINAPIQGSAADIIKV------------------------------------- 871

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
               R   R    G K               + ++                +    P  +
Sbjct: 872 -AMARIYERFKAEGLKA--------------KMILQVHDE-----------LNFSVPAKE 905

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M     +   +PLKA+      +
Sbjct: 906 KEIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 937


>gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4]
 gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4]
          Length = 949

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 95/693 (13%), Positives = 194/693 (27%), Gaps = 145/693 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVL 57
            ++  D ET         G+  +  D  ++  +F F +          D      + +  
Sbjct: 377 KSVCFDTETT--------GLDMFTSD--LVGMSFCFAEGEAYYVSLPEDKTESKEVLREF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K   EN  +  +  N  F+  +L   + +++   +   T++                 L+
Sbjct: 427 KAFFENDRIEKIGQNMKFDLLML-WQYGIELK-GKLFDTMIAHYLVQP---------ELR 475

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                + E           +                     +Y   D  VT  + + LE 
Sbjct: 476 HGMDYLAEIYLNYRTIHFEDLVGAKGKNQADIRTVDINKLCDYAAEDADVTFRLKQILEK 535

Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +  T+   G  +D       + I+  E  KL++E+  L  
Sbjct: 536 ELKADALENLFYEIEMPLMQVLATMEHTGVRIDSEALRQSSVILTDEMLKLEKEIHQLAG 595

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
               +     ++   LF    L  +   T+    +T + +L   +   P   ++ + R  
Sbjct: 596 Y-EFNVSSPMQVGEILFDRLKLDDKAKKTKTGQYSTSEDILEKLQSKHPIIGKILDYR-G 653

Query: 283 ASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             +     ++ L + ++   G++  +     A+ TGR S      QN+P      +E   
Sbjct: 654 LKKLLSTYIDALPQLISPITGKVHTSYNQTVAA-TGRLSSTNPNLQNIPIRDAQGKE--- 709

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R   I         AD + IE R++A ++G++  L+A
Sbjct: 710 ----------------------IRKAFIPDADCLFFSADYSQIELRIMAHLSGDKNMLEA 747

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F +G D++  T A+ + +   +VT D R   K     + Y            +  L++  
Sbjct: 748 FNSGHDIHTATAAKIYKIPLEEVTSDMRRKAKTANFGIIYGISV-----FGLSDRLSIPR 802

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                        + D + +     +   E    +  +G   +R       ++S V    
Sbjct: 803 AEAKELIEGYFATYPDVKKYMDNAIQKAKEMGYVETLLGR--KRFLPDINSQNSIVRGF- 859

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +        G A    K   V +                                 
Sbjct: 860 --AERNAINAPIQGTAADIIKIAMVRIQN------------------------------- 886

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
                         +L    +QA         M                 +    P  + 
Sbjct: 887 --------------RLENESLQA------KMTM-QVHDE-----------LNFTVPKNEL 914

Query: 642 FNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 +   M +       +PL A+      +
Sbjct: 915 EALQKAVIEEMENAIK--LQVPLIADCGVGANW 945


>gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
 gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195]
          Length = 879

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 97/699 (13%), Positives = 206/699 (29%), Gaps = 167/699 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVL---- 57
            +  D ET              A +  ++ F+F   ++        H    +P  +    
Sbjct: 318 IIAFDTETTGLN----------AREAKIVGFSFCVSENEAFYVPLNHTYLAVPSQISMQT 367

Query: 58  -KEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113
            K AL +     I+ HN  ++  +++  F L  P  ++  T++LA          +  + 
Sbjct: 368 AKRALGQIYSHFIIGHNLKYDFAIIENNFKLT-PPKKYADTMILAWLYNPSLRVNMDDLA 426

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L+L   K    + ++              + +            Y   D  +T   + 
Sbjct: 427 --LRLFDYKTLHFESVVK-------------KGENFASVELEKACNYAAEDAYITLRFYL 471

Query: 174 RLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                                  + + +   G  ++      L Q  + E   L +E+ +
Sbjct: 472 YFLKNLEPNLLKLGFESEFNFIEVLRKMEQSGIKLETQKLQNLMQEFEKEIKFLSEEIYT 531

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
           L      +    +++   LF +  L     T+   +T ++VL +     P   ++   R 
Sbjct: 532 LCDDK-FNLNSPKQVGDVLFEKLNLPSAKKTKTGYSTDEKVLENLVDKHPVVSKILAYR- 589

Query: 282 RASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             ++        L++    D   R+  +    G + TGR S      QN+P   +  ++ 
Sbjct: 590 ELAKLYSTYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKEPNLQNIPAHGQYAKDY 648

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                    +SC IA +G   +  D + IE R+LA  + ++  L
Sbjct: 649 -------------------------KSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+  ED++  T    F     +   + R++ K +   L Y                  
Sbjct: 684 EAFKNDEDIHARTAIMIFG----ENNYETRSVAKSINFGLIYGM---------------- 723

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                        +   +       +  +   + +    + +  
Sbjct: 724 ----------------------------GYKTLSQNLKIEASLAKEYIEKYFANFTSIKS 755

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            +  +    +                           N  +   SGR   +         
Sbjct: 756 YFERVKNEAK--------------------------INGYISTLSGRKRYFDFANAKPMQ 789

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCET 636
           +            Y  +   +I+Q  + DI+   M+   K   A   ++L +HDE++ E 
Sbjct: 790 V----------AMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDELIFEV 839

Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            D            +M +       + LK     +K + 
Sbjct: 840 KDELCEKFEKRARDIMENIVK--LKVNLKTSSSIAKNWG 876


>gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16]
 gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16]
          Length = 941

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 93/694 (13%), Positives = 194/694 (27%), Gaps = 149/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLK 58
            L +D ET     +          D  ++  +F   ++         +      + +  +
Sbjct: 370 ILALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAERKEAIKIVREFE 419

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              +N     V  N  ++  VL+    +++   +   T+V            +  + E  
Sbjct: 420 PVFKNEKSLKVGQNIKYDMLVLQNY-GIEVR-GKLFDTMVAHYVLQPELRHNMDYLAEIY 477

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +    +ELI                K     + +    Y   D  VT ++   LE
Sbjct: 478 LH--YQTIHIEELIG---------PKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILE 526

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       ++        +++E+ +L 
Sbjct: 527 QELKKNDAEKLFYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTL- 585

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL S +       ++   R 
Sbjct: 586 AEGEFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYR- 644

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N   GR+  +      + TGR S      QN+P      +E  
Sbjct: 645 GLKKLLSTYIDALPQLINPKTGRIHTSFNQ-TVTATGRLSSSNPNLQNIPIRDEDGKE-- 701

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   I  +G     AD + IE R++A ++ ++  + 
Sbjct: 702 -----------------------IRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMID 738

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D++  T A+ + V   +VT D R   K     + Y               +N++
Sbjct: 739 AFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISV-----FGLAERMNVD 793

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +   E +   +++     +   EH   +       +R       +++ V   
Sbjct: 794 RKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHR--KRFLPDINSRNAVVRGY 851

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +        G A    K                                      
Sbjct: 852 ---AERNAINAPIQGSAADIIKV------------------------------------- 871

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
               R   R    G K               + ++                +    P  +
Sbjct: 872 -AMARIYERFKAEGLKA--------------KMILQVHDE-----------LNFSVPAKE 905

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +     +    M     +   +PLKA+      +
Sbjct: 906 KEIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 937


>gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8]
 gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8]
          Length = 942

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 111/699 (15%), Positives = 195/699 (27%), Gaps = 156/699 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------VM 53
           +  D ET S   LT            ++  +F             HD            +
Sbjct: 367 ICFDTETTSLDPLT----------AQIVGMSFSVAAGTGAYLPLTHDYFDAPSQLPLAEV 416

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKA 111
               K  LEN  +  V  N  +++ VL     + +       TL+ +          +  
Sbjct: 417 LAKFKPLLENPTIKKVGQNLKYDKHVLANH-GIALNGIA-HDTLLQSYVLESHRGHGMDE 474

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G E I+     E       +    ++    +  EY   D  +T ++
Sbjct: 475 LSARH--------LGIEPISF----EQVAGKGAKQVGFNQVTIEVAAEYAAEDADITLQL 522

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            + L P               E        TI   G  +D  + +  +  + ++  +L+ 
Sbjct: 523 HEALSPQVLQDDKLNFIYSQVEMPSMECLFTIERNGVLIDANMLNRQSNEIGMKLMELEA 582

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF + G+     T +    T + VL       P    +
Sbjct: 583 KAFELAGQP-FNLGSPKQLQEILFGKLGIKPIKKTPSGAPSTDEDVLQELALDYPLPKVL 641

Query: 277 FNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++      + L + +N   GR+        A  TGR +      QN+P  +  
Sbjct: 642 LEYR-GLAKLKSTYTDKLPKMINAHTGRVHTNYNQAVA-ITGRLASSDPNLQNIPVRTAE 699

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   IA  G  +V AD + IE R++A ++ +
Sbjct: 700 GRR-------------------------IREAFIAPPGSHIVSADYSQIELRIMAHLSKD 734

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              L+AF   ED++  T A  F V  + V  +QR   KV+   L Y   A          
Sbjct: 735 AGMLQAFANNEDIHRATAAEIFGVERSAVDNEQRRYAKVINFGLIYGMSA-----FGLAQ 789

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+   A           +     + +  +E   E    + + G           + +S
Sbjct: 790 NLNIERSAAQNYIERYFARYPGVRQYMQDTRELAKEKGYVETYFGRRLWVP-----EINS 844

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
                     +A       G A    K   + +    KD+                    
Sbjct: 845 ANGMRRAGAERAAINAPMQGTAADLIKLAMIAVDKWLKDEQLN----------------- 887

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                                 M         +VL V       
Sbjct: 888 ----------------------------------TKLIM-QVHDE---LVLEV------- 902

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             D++       L  LM S       +PL AE      +
Sbjct: 903 -ADSELELVKQKLPELMQSVAK--LDVPLLAEVGVGSNW 938


>gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2]
 gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2]
          Length = 1008

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 96/714 (13%), Positives = 196/714 (27%), Gaps = 170/714 (23%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
             + ID +  S   +             +   A     +        H             
Sbjct: 418  HVAIDIKATSIDPM----------QADICGIALALTPNKACYIPLGHKKSGGGEDLFASG 467

Query: 52   ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                         VL++ +E+  V     +  F   +L       I +       +++ +
Sbjct: 468  LAEGQIEAAKAFDVLRKLMESEAVLKSGLDIKFISVMLAQH---KITLRTTDDVQLMSYA 524

Query: 103  NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                     + E+L          K L     K               +       EY  
Sbjct: 525  LDAGRGAHDI-ESL--------AQKWLAHAAIKHGDVIGSGRNKLSLDQVTIERATEYGA 575

Query: 163  GDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                +   ++  ++     E+           L  +   +  RG  +D  +   L+    
Sbjct: 576  ETADIIIRLWLLMKARLISERMNNVYESLERPLIGVLARMERRGIMIDRQVLSRLSGDFA 635

Query: 213  VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKK 268
               ++L+ E+  +    + +    ++L   +F + GL     T+    +T   +L    +
Sbjct: 636  QTASRLEDEIRKIAGEDI-NPGSPKQLGDVIFGKMGLPGGQKTKTGAWSTSASILEDLAE 694

Query: 269  LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                  +   +  + S+      + L   +N   +   T   L A+ TGR S      QN
Sbjct: 695  EGHVFPRKILDWRQVSKLKSTYTDALPNYVNPQTQRVHTTYALAATTTGRLSSNEPNLQN 754

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            +P  +    +                         +R   IA +G KLV AD + IE R+
Sbjct: 755  IPVRTEDGRK-------------------------IRRAFIAEKGHKLVSADYSQIELRL 789

Query: 389  LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            LA +A      +AF    D++  T +  F V    +  + R   K +             
Sbjct: 790  LAEIADIPVLKQAFHDKLDIHAMTASEMFGVPVKDMPAEVRRRAKAINF----------- 838

Query: 449  QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   G++                                  A +            K
Sbjct: 839  ---GIIYGIS------------------------------AFGLANQLGIPREEAGAYIK 865

Query: 509  AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
             + ++   +    +       +                          +  +    GR  
Sbjct: 866  KYFERFPGIRAYMDATRDFCRE--------------------------HGYVETLFGRKC 899

Query: 569  VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGY 622
             Y D+  + +   +      R             Q  + DI+   M+         K   
Sbjct: 900  HYPDIKASNA---SLRAFNERAAINARL------QGTAADIIRRAMIRMEDALAEKKLAA 950

Query: 623  DIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             ++L VHDE+V E PD++      ++  +M +   P+    +PL  +   +  +
Sbjct: 951  RMLLQVHDELVFEVPDSEVGDTIPVIQEVMENAAFPAARLSVPLHVDARAAHNW 1004


>gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
 gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21]
          Length = 879

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 98/699 (14%), Positives = 207/699 (29%), Gaps = 167/699 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVL---- 57
            +  D ET              A +  ++ F+F   ++        H    +P  +    
Sbjct: 318 IIAFDTETTGLN----------AREAKIVGFSFCVSENEAFYVPLNHTYLAVPSQISMQA 367

Query: 58  -KEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113
            K AL +     I+ HN  ++  +++  F L  P  ++  T++LA          +  + 
Sbjct: 368 AKRALGQIYSHFIIGHNLKYDFAIIENNFKLT-PPKKYADTMILAWLYNPSLRVNMDDLA 426

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L+L   K    + ++              + +            Y   D  +T   + 
Sbjct: 427 --LRLFDYKTLHFESVVK-------------KGENFASVELEKACNYAAEDAYITLRFYL 471

Query: 174 RLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                                  + + +   G  ++      L Q  + E   L +E+ +
Sbjct: 472 YFLKNLEPNLLKLGFESEFNFIEVLRKMEQNGIKLETQKLQNLMQEFEKEIKLLSEEIYT 531

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
           L      +    +++   LF +  L     T+   +T ++VL S     P   ++   R 
Sbjct: 532 LCDDK-FNLNSPKQVGDVLFEKLKLPSAKKTKTGYSTDEKVLESLIDKHPVVSKILAYR- 589

Query: 282 RASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             ++        L++    D   R+  +    G + TGR S      QN+P   +  ++ 
Sbjct: 590 ELAKLYSTYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKEPNLQNIPAHGQYAKDY 648

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                    +SC IA +G   +  D + IE R+LA  + ++  L
Sbjct: 649 -------------------------KSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+  ED++  T    F     +   + R++ K +   L Y                  
Sbjct: 684 EAFKNDEDIHARTAIMIFG----ENNYETRSVAKSINFGLIYGM---------------- 723

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                        +   +       +  +   + +    + +  
Sbjct: 724 ----------------------------GYKTLSQNLKIEASLAKTYIEKYFANFTSIKS 755

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            + ++    +                           N  +   SGR   +         
Sbjct: 756 FFEKVKNDAK--------------------------INGFISTLSGRKRYFDFANAKPMQ 789

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCET 636
           +            Y  +   +I+Q  + DI+   M+   K   A   ++L +HDE++ E 
Sbjct: 790 V----------AMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDELIFEV 839

Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            D            +M +       + LK     +K + 
Sbjct: 840 KDELCEKFEKRARDIMENIVK--LKVNLKTSSSIAKNWG 876


>gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195]
          Length = 880

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 95/664 (14%), Positives = 189/664 (28%), Gaps = 128/664 (19%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
             Y E+  ++ F+   ++            V  +V KE +EN D      +S   R V+ 
Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDTAVESEVFKEWVENDDQKKWVFDSK--RAVVA 383

Query: 82  -ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                +++       TL+ A      ++   V    K     +       + + KG    
Sbjct: 384 LRWQGIELKGAE-FDTLLAAYIINPGNSYDDVASVAK--DYGLHIVSSDESVYGKGAKRA 440

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
              +     H     L  +  +  +    E   +LE     E  L  +   +   G  VD
Sbjct: 441 VPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
           V     + + +  +  + ++++  +      +    ++L   LF + GL +   T+   +
Sbjct: 501 VDRLKRMGEELGAKLKEYEEKIHEIAG-EPFNINSPKQLGVILFEKIGLPVVKKTKTGYS 559

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL            +   R    +     +  L++    D     T      ++TG
Sbjct: 560 TSADVLEKLADKHDIVDYILQYRQ-IGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   + SE    +
Sbjct: 619 RLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             AD + IE RVLA ++ ++  ++AF    D++  T    F+VA  +VT   R   K + 
Sbjct: 654 FAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVN 713

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    +                                 
Sbjct: 714 --------------FGIVYGISDYGLSQ------------------------------NL 729

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                        + +    V         + ++  + G                     
Sbjct: 730 GITRKEAGAFIDRYLESFQGVKAYM---EDSVQEAKQKGYVTTLMH-------------- 772

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    R     ++ +             R            +Q  + DI+ + M++
Sbjct: 773 ---------RRRYIPELTSRNF---NIRSFAERTAMNTP------IQGSAADIIKKAMID 814

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P  +      L   +M      A  +PLK +   
Sbjct: 815 MAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVDFAS 872

Query: 670 SKRY 673
              +
Sbjct: 873 GPSW 876


>gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5]
 gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5]
          Length = 880

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 95/664 (14%), Positives = 189/664 (28%), Gaps = 128/664 (19%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
             Y E+  ++ F+   ++            V  +V KE +EN D      +S   R V+ 
Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDIAVESEVFKEWVENDDQKKWVFDSK--RAVVA 383

Query: 82  -ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                +++       TL+ A      ++   V    K     +       + + KG    
Sbjct: 384 LRWQGIELKGAE-FDTLLAAYIINPGNSYDDVASVAK--DYGLHIVSSDESVYGKGAKRA 440

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
              +     H     L  +  +  +    E   +LE     E  L  +   +   G  VD
Sbjct: 441 VPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
           V     + + +  +  + ++++  +      +    ++L   LF + GL +   T+   +
Sbjct: 501 VDRLKRMGEELGTKLKEYEEKIHEIAG-EPFNINSPKQLGVILFEKIGLPVVKKTKTGYS 559

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL            +   R    +     +  L++    D     T      ++TG
Sbjct: 560 TSADVLEKLADKHDIVDYILQYRQ-IGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   + SE    +
Sbjct: 619 RLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             AD + IE RVLA ++ ++  ++AF    D++  T    F+VA  +VT   R   K + 
Sbjct: 654 FAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVN 713

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    +                                 
Sbjct: 714 --------------FGIVYGISDYGLSQ------------------------------NL 729

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                        + +    V         + ++  + G                     
Sbjct: 730 GITRKEAGAFIDRYLESFQGVKAYM---EDSVQEAKQKGYVTTLMH-------------- 772

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    R     ++ +             R            +Q  + DI+ + M++
Sbjct: 773 ---------RRRYIPELTSRNF---NIRSFAERTAMNTP------IQGSAADIIKKAMID 814

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P  +      L   +M      A  +PLK +   
Sbjct: 815 MAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVDFAS 872

Query: 670 SKRY 673
              +
Sbjct: 873 GPSW 876


>gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
 gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12]
          Length = 941

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 96/693 (13%), Positives = 191/693 (27%), Gaps = 147/693 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            L +D ET     +          D  ++  +F   ++                + +  +
Sbjct: 370 ILALDTETTGTDPM----------DAELVGMSFSIAENQAFYIPVPAGREEATKIVREFE 419

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEAL 116
              +N     V  N  ++  VL+    ++I   R   T+V            +  + E  
Sbjct: 420 SVFKNDKSLKVGQNIKYDMLVLQNY-GIEIR-GRLFDTMVAHYVLQPELRHNMDYLAEIY 477

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +    +ELI    KG          K     + +    Y   D  VT ++   LE
Sbjct: 478 LH--YQTIHIEELIGPRGKG---------QKNMRDLSPKDVYLYACEDADVTLKLKNILE 526

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
                          E  L  +   I   G  +D       ++        +++E+ +L 
Sbjct: 527 QELKKNDAEKLFYEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLA 586

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    +++   LF +  +      T+T    T + VL S +       ++   R 
Sbjct: 587 G-EEFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYR- 644

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     ++ L + +N       T      + TGR S      QN+P      +E   
Sbjct: 645 GLKKLLSTYIDALPQLINPRTGRIHTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKE--- 701

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R   I  +G     AD + IE R++A ++ ++  + A
Sbjct: 702 ----------------------IRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDA 739

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F +G D++  T A+ + V   +VT D R   K     + Y               +N++ 
Sbjct: 740 FLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISV-----FGLAERMNVDR 794

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                  +   E +   + +     +   EH   +       +R       +++ V    
Sbjct: 795 KEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHR--KRFLPDINSRNAVVRGY- 851

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +        G A    K                                       
Sbjct: 852 --AERNAINAPIQGSAADIIKV-------------------------------------- 871

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
              R   R    G K               + ++                +    P  ++
Sbjct: 872 AMARIYERFKAEGLKA--------------KMILQVHDE-----------LNFSVPVKEK 906

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                +    M     +   +PLKA+      +
Sbjct: 907 EIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 937


>gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95]
 gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95]
          Length = 896

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 103/698 (14%), Positives = 200/698 (28%), Gaps = 163/698 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---VMPQVLKE 59
            +  D ET S                 ++  A               +     + + + +
Sbjct: 337 IISFDLETSSLDP----------YQADIVGIALSCKPFEGYFLYLYKEKDRWEITKEIVD 386

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEAL 116
            L N  V  +  N  ++ TVLK    +++       +++ A      S    +  + +  
Sbjct: 387 LLNNKKV--IGQNLKYDITVLK-VNGIELSKVH-FDSMIAAYLLNPDSRRFNMDDLAKEY 442

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                       L  +  K +       +         +   EY   D  +   +F+ L+
Sbjct: 443 ------------LDYKTIKYKEVMGKDIKLLTLGDIDKKRVVEYAGEDADIAYRLFEVLK 490

Query: 177 P----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P              E     +   +   G   D+     L +  + + + L  E++ + 
Sbjct: 491 PKLEEFELFELFEKIEMSTINVLSEMEMNGVYFDLKELQKLEEEYNKKLSSLMYEMKKIV 550

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
                +    +++   LF   GL  +  T++    T    L + +   P   ++   R +
Sbjct: 551 GYD-FNPNSPKQVGELLFENLGLKGKRKTKSGSYSTDADSLEALRDEHPIIEKLLEYR-K 608

Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             +     +  + + +N   GR+  +    G + TGR S      QNLP      E +  
Sbjct: 609 YQKLLSTYIIAIPKLVNKKTGRVHTSFNQTG-TATGRLSSSEPNLQNLPIREEDGERIRS 667

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
            +                            +   L+ AD + IE RVLA +  ++  + A
Sbjct: 668 TVKAQK------------------------DDYVLLSADYSQIELRVLAHLTNDETLINA 703

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  GED++  T A  F V    V  +                                  
Sbjct: 704 FNNGEDIHALTAAAIFGVKIDDVDYNM--------------------------------- 730

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                             NF      +    A          +     + + + +V E  
Sbjct: 731 -----------RRVGKVVNFSLVYGSSPYGLAENLKIPVEDAKDFMNRYFKTYQKVKEYQ 779

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                + +   + G                             GR    +++        
Sbjct: 780 ---ESSLKIATQKGYVETI-----------------------FGRKRFLKNIK------- 806

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCETPD 638
           T   +L R            +Q  + DI+   M+N  K       ++L VHDE+V E P+
Sbjct: 807 TGKSELKRIVINTP------IQGSAADIMKLAMINLYKKLPKEAKLILQVHDEVVIELPE 860

Query: 639 T-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              E    M+   M +       +PLK +    K ++K
Sbjct: 861 KIVEETKKMVQDCMENAVK--LNIPLKVDISVGKNWQK 896


>gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354]
          Length = 955

 Score =  343 bits (879), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 110/709 (15%), Positives = 195/709 (27%), Gaps = 151/709 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------ 49
             + +D ET S +D         A    ++  +     +        H            
Sbjct: 357 RLVAVDTET-SALD---------AMQADLVGVSLAIGPNQACYIPLGHFNEGGGGDDMFA 406

Query: 50  -------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
                    V    LK  LE+  V  V  N  ++  VL       I +     T++++ +
Sbjct: 407 EKPQQIETEVALAKLKPLLESDAVVKVGQNIKYDLNVLARH---GIAVAPIEDTMIVSFA 463

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                +   +G    +        + L       +       +  P          EY  
Sbjct: 464 LDAGRSQDGIGGGHGMDEL---AQRHLGHTCLTFKEICGTGKKAIPFGEVPIDRATEYAA 520

Query: 163 GDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            D  VT  ++  L+P              ++ L  +   +   G  VD      L++   
Sbjct: 521 EDADVTSRLYTHLKPRLAVEGGTRIYERVDRPLIPVVAGMERHGIKVDRQQLAALSERFA 580

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKK 268
            E  +L+ E+  +      +    ++L   LF + G            +T Q VL     
Sbjct: 581 RETARLEGEIHEIAGQ-EFTVGSPKQLGDILFDKMGYKGGKKGKSGQYSTDQSVLEKLDA 639

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                        + ++      + L +A+N       T   L  ++TGR S      QN
Sbjct: 640 TGAPIATKVLEWRQLAKLKSTYTDALQQAINPKTNRVHTSYSLVGAQTGRLSSTDPNLQN 699

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P  +    E                         +R   +A EG  L+ AD + IE R+
Sbjct: 700 IPIRTEIGRE-------------------------IRQAFVADEGNVLLAADYSQIELRL 734

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            A MA      +AF  GED++  T    F      V +D RA  K +  A+ Y       
Sbjct: 735 AAHMADVAPLREAFAAGEDIHARTAQEMFG----SVDRDTRARAKTINFAILYGIS---- 786

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            +      L +         +     +   + +     E   E        G        
Sbjct: 787 -RWGLAGRLGIEADEAQDLIDIYFARFPGIQRYIVNTMETVRECGYSQTLFGRK------ 839

Query: 509 AWRQK-HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            W  + +S+         +A       G +    KR    +     +   L    P G  
Sbjct: 840 TWFPRINSKNQAERQGSERAAVNAPIQGTSADIIKRAMARMGPALAEAG-LKPDAPDGVR 898

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
           +                                             ++            
Sbjct: 899 M---------------------------------------------LLQVH--------- 904

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
             DE+V E P+     A  ++  +M     P+    +PL  E    K +
Sbjct: 905 --DELVFEMPEGLVEQAKPVIRSVMADAAGPAVELSVPLGVEIGTGKNW 951


>gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis]
          Length = 880

 Score =  343 bits (879), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 94/664 (14%), Positives = 189/664 (28%), Gaps = 128/664 (19%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
             Y E+  ++ F+   ++            V  +V KE +EN +      +S   R V+ 
Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDIAVESEVFKEWVENDEQKKWVFDSK--RAVVA 383

Query: 82  -ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                +++       TL+ A      ++   V    K     +       + + KG    
Sbjct: 384 LRWQGIELKGAE-FDTLLAAYIINPGNSYDDVASVAK--DYGLHIVSSDESVYGKGAKRA 440

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
              +     H     L  +  +  +    E   +LE     E  L  +   +   G  VD
Sbjct: 441 VPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
           V     + + +  +  + ++++  +      +    ++L   LF + GL +   T+   +
Sbjct: 501 VDRLKRMGEELGAKLKEYEEKIHEIAG-EPFNINSPKQLGVILFEKIGLPVVKKTKTGYS 559

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL            +   R    +     +  L++    D     T      ++TG
Sbjct: 560 TSADVLEKLADKHDIVDYILQYRQ-IGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   + SE    +
Sbjct: 619 RLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             AD + IE RVLA ++ ++  ++AF    D++  T    F+VA  +VT   R   K + 
Sbjct: 654 FAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVN 713

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    +                                 
Sbjct: 714 --------------FGIVYGISDYGLSQ------------------------------NL 729

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                        + +    V         + ++  + G                     
Sbjct: 730 GITRKEAGAFIDRYLESFQGVKAYM---EDSVQEAKQKGYVTTLMH-------------- 772

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    R     ++ +             R            +Q  + DI+ + M++
Sbjct: 773 ---------RRRYIPELTSRNF---NIRSFAERTAMNTP------IQGSAADIIKKAMID 814

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P  +      L   +M      A  +PLK +   
Sbjct: 815 MAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVDFAS 872

Query: 670 SKRY 673
              +
Sbjct: 873 GPSW 876


>gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70]
 gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70]
          Length = 878

 Score =  343 bits (879), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 87/655 (13%), Positives = 192/655 (29%), Gaps = 125/655 (19%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           ++ FA    +     +      +   +  + LE+        +       LK    + + 
Sbjct: 334 ILGFAIA--NEHGNFFIRTDTALSSSLFTQWLEDESKKKSVFDGKRAIVSLKWQ-GIQLR 390

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             +    L+ +       + + V    K       +  E I  + KG   +   +     
Sbjct: 391 GVQ-FDLLIASYLLNPSQSTEDVASIAKTKQYTDVQSDEAI--YGKGAKQKIPDEPVLAE 447

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           H           + D     +  ++    +  E  L  +   +   G  +DV     + +
Sbjct: 448 HLVRKAAAIRALEQDFICDLQENEQYSLFTDLELPLSSILAEMEFTGVKIDVKRLKEMGE 507

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
            +  +  +++QE+  L      +    ++L   LF +  L +   T+   +T   VL   
Sbjct: 508 ELTEQLKEIEQEIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSAEVLEKL 566

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   ++ + R    +     +  L++ ++ D     T+     ++TGR S      
Sbjct: 567 APQHEIVEKILHYRQ-LGKLQSTYIEGLLKVVHHDTNKVHTIFNQALTQTGRLSSTEPNL 625

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIE 385
           QN+P       +                         +R   +       +  AD + IE
Sbjct: 626 QNIPIRLEEGRK-------------------------IRQAFVPSEPDWVIFSADYSQIE 660

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA +A ++  + AF    D++  T    F+V   +VT + R   K +   + Y    
Sbjct: 661 LRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVNEDEVTPNMRRQAKAVNFGIVYGIS- 719

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                   +  LN+             E +   + + + + +   +              
Sbjct: 720 ----DYGLSQNLNITRKEASEFIKRYFEIFPGVKQYMKDIVQEAKQKGYVTTL------- 768

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                                               +RR +P +  +             
Sbjct: 769 ----------------------------------LHRRRYLPDITSRNFNLRSF------ 788

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TK 619
                      R+ +NT                   +Q  + DI+ + M++         
Sbjct: 789 ---------AERTAMNTP------------------IQGSAADIIKKAMIDLSNRLKKEN 821

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               ++L VHDE++ E P  +      +   +M +       +PLK + +    +
Sbjct: 822 MKARMLLQVHDELILEAPKEEVERLQQIVPEVMENAVQ--LRVPLKVDYHFGPTW 874


>gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
 gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1]
          Length = 1020

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 98/693 (14%), Positives = 193/693 (27%), Gaps = 166/693 (23%)

Query: 27   DVCVILFAFGFDDHPVELWDCVH--------------------DPVMPQVLKEALENTDV 66
               +   A     +        H                    D      LK  LE+  +
Sbjct: 444  QASLCGIALALAPNDACYIPLAHRQAGDGGGLFDAGLAPDQVKDRDALAALKPVLESAGI 503

Query: 67   TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKM 123
              +  N  F   VL A   + +         +++ +          +++ E         
Sbjct: 504  LKIGFNIKF-VAVLLAQHGITL--ANVDDIQLMSYALDAGRGSQKFESLAE--------- 551

Query: 124  EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179
                 L                     + A      +      V   +++ L+P      
Sbjct: 552  ---HVLAHAVLGEGELVGSGKNKLTFEQVAIDRATAHAAEAADVIHRLWRVLKPRLVAER 608

Query: 180  ------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                  + E+ L  +   +  RG  +D  +   L+        +++ EL+ L    + + 
Sbjct: 609  MTAVYETLERPLVTVLAQMERRGIAIDRQVLSRLSGDFAQTAGRVEAELQELAGEPI-NV 667

Query: 234  RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               +++   LF + GL     T+    +T   +L    +      +      + S+    
Sbjct: 668  GSPKQIGDILFGKMGLPGGTKTKTGAWSTSASILDDLAEQGNDFARKILEWRQVSKLKST 727

Query: 290  KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
              + L   +N   +   T   L A+ TGR S      QN+P  +    +           
Sbjct: 728  YTDALPTYVNPQSQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRK----------- 776

Query: 350  ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                          +R   IA+ G KLV AD + IE R+LA +A      +AF+ G D++
Sbjct: 777  --------------IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIH 822

Query: 410  VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              T +  F V    +  + R   K +                    G++           
Sbjct: 823  AMTASEMFGVPIKDMPSEVRRRAKAINF--------------GIIYGIS----------- 857

Query: 470  SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                   A +            K + ++   +    +E  +   
Sbjct: 858  -------------------AFGLANQLGIAREEASAYIKRYFERFPGIRAYMDETREF-- 896

Query: 530  QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
               ++G                             GR   Y ++  + +   +      R
Sbjct: 897  -CRKHGYVTTL-----------------------FGRKCHYPEIKASNA---SVRAFNER 929

Query: 590  EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643
                         Q  + DI+   M          K    ++L VHDE++ E PD +   
Sbjct: 930  AAINARL------QGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDDEVAA 983

Query: 644  -ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
               ++ H+M     P+    +PL  +   +  +
Sbjct: 984  TLPVVQHVMQDAPFPAVLLSVPLHVDARAADNW 1016


>gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
 gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195]
          Length = 903

 Score =  342 bits (878), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 108/679 (15%), Positives = 204/679 (30%), Gaps = 134/679 (19%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQV----LKEALENTD 65
           L   G  + A D  +   A                       +        L   L +  
Sbjct: 336 LAVSGTPEEAMDARLTALALSSAAGDACFVPAEFIGSASEGQMFAAEGHSGLAALLGDEK 395

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
           ++  AHN+ +   +L +     +       T++ A   G     K +     +      E
Sbjct: 396 ISKTAHNAKYLMNLLLSA-GQAVKGLD-FDTMIAAHLLGE----KNLAIKDLVFEHFGIE 449

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
             ++     +        +       +    +    KG         + ++  +  E  L
Sbjct: 450 IADIENILTRNGKKASFSEVQLSEAAQLAADYTFRLKGIFAAQLAETRLMDLFARVEMPL 509

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   +   G  +D  L   + +    +  KL++++ +       +    ++L   LF 
Sbjct: 510 LPILLGMERTGIMLDTDLLKAMAEKTGRQIFKLEEDIYARAGH-NFNIGSPQQLGRILFD 568

Query: 246 ETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           E  L +   T+   +T   VL   K        +   R    +     L+TL   +N   
Sbjct: 569 ELKLPVIKKTKTGYSTGAEVLEELKGKHRIVDLILEYR-MLVKLKSTYLDTLPRMVNPHT 627

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           R   T      + TGR S      QN+P       E                        
Sbjct: 628 RRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGRE------------------------ 663

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   IA  G  L+  D + I+ RVLA ++ +   ++AF++ +D++  T AR  N+ P+
Sbjct: 664 -IRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIPPS 722

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VTK+QR + K +   +                G++        +               
Sbjct: 723 KVTKEQRRLAKTVNFGVI--------------YGMSSYGLEQATE--------------- 753

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                ++  KA+ +K+ RV+  ++E+ Q                
Sbjct: 754 ---------------LSLEEADKFIKAYFEKYPRVAVYFSEIKQQVRT------------ 786

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR     ++ +             R            V
Sbjct: 787 --------------QGYVETLLGRRRYIPEINSPN---RILRESAERMAINMP------V 823

Query: 603 QAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655
           Q  S DI+   M+         K    ++L VHDE++ E P T+      +L   M+   
Sbjct: 824 QGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPKTELGRMSDLLVETMSGAV 883

Query: 656 SWAKGLPLKAEGYESKRYR 674
             A  +PLK E      + 
Sbjct: 884 --AFEIPLKVELKSGANWG 900


>gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I
 gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis]
 gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168]
          Length = 880

 Score =  342 bits (878), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 94/664 (14%), Positives = 189/664 (28%), Gaps = 128/664 (19%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
             Y E+  ++ F+   ++            V  +V KE +EN +      +S   R V+ 
Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDIAVESEVFKEWVENDEQKKWVFDSK--RAVVA 383

Query: 82  -ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                +++       TL+ A      ++   V    K     +       + + KG    
Sbjct: 384 LRWQGIELKGAE-FDTLLAAYIINPGNSYDDVASVAK--DYGLHIVSSDESVYGKGAKRA 440

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
              +     H     L  +  +  +    E   +LE     E  L  +   +   G  VD
Sbjct: 441 VPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVD 500

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
           V     + + +  +  + ++++  +      +    ++L   LF + GL +   T+   +
Sbjct: 501 VDRLKRMGEELGAKLKEYEEKIHEIAG-EPFNINSPKQLGVILFEKIGLPVVKKTKTGYS 559

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL            +   R    +     +  L++    D     T      ++TG
Sbjct: 560 TSADVLEKLADKHDIVDYILQYRQ-IGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   + SE    +
Sbjct: 619 RLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             AD + IE RVLA ++ ++  ++AF    D++  T    F+VA  +VT   R   K + 
Sbjct: 654 FAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVN 713

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    +                                 
Sbjct: 714 --------------FGIVYGISDYGLSQ------------------------------NL 729

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                        + +    V         + ++  + G                     
Sbjct: 730 GITRKEAGAFIDRYLESFQGVKAYM---EDSVQEAKQKGYVTTLMH-------------- 772

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    R     ++ +             R            +Q  + DI+ + M++
Sbjct: 773 ---------RRRYIPELTSRNF---NIRSFAERTAMNTP------IQGSAADIIKKAMID 814

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P  +      L   +M      A  +PLK +   
Sbjct: 815 MAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVDFAS 872

Query: 670 SKRY 673
              +
Sbjct: 873 GPSW 876


>gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH]
 gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH]
          Length = 905

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 96/701 (13%), Positives = 196/701 (27%), Gaps = 166/701 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------MPQ 55
            + ID ET S              +  ++  +  F +                    + Q
Sbjct: 338 YVSIDTETTSTN----------VYEAQILGISVSFKEFESYYIPIETKEKKSIEREYITQ 387

Query: 56  VLKEALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112
              E          +  N  F+  +        IP   +  T++ A         +L  +
Sbjct: 388 KFNEFF--KTKPKLIGQNYKFDYKIFTRHGFNAIPP--YFDTMIAAYVIDPNTKVSLDFL 443

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E   +         + I         + +  +N             Y   D  +T  +F
Sbjct: 444 SEKYLM--------HKNIKY-------QEIVSQNGTLKDIPLETVSNYAAEDADITFRLF 488

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           K                  E     +   + + G  +D       +Q +  E   ++ E+
Sbjct: 489 KIFAKKLKEDNLESLMIDVEMPFSNVITEMEENGIYLDKDYLRQYSQELTKELKLIENEI 548

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGL--HLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
                    +    ++L   LF E  L         +T  +VL + K       ++   R
Sbjct: 549 IQSIGIK-FNLNSSKQLYRVLFDELKLVLPPNVKKHSTSIKVLEAIKDQHESIPKIIQYR 607

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            + S+      + L++ +N+      T      + TGR        QN+P       +  
Sbjct: 608 -KISKLKNTYTDNLIKFINAKTNKIHTNFIQAKAATGRILSTAPNLQNIPIKDEKGRK-- 664

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R      EG   + AD + IE  +LA  + +   ++
Sbjct: 665 -----------------------IREAFKPKEGNLFISADYSQIELVILAHFSEDGALIE 701

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+  ED+++ T ++ F V   +VT   R + K +                         
Sbjct: 702 AFKNKEDIHIKTASQLFKVDTDKVTPSMRRVAKSIN------------------------ 737

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                               F      +    + E        ++   ++   +S++   
Sbjct: 738 --------------------FGIIYNMSAHGLSQELSIKREEAQKFIDSYFNLYSKIKIF 777

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +    +   +NG +    K                       R    +++ +     
Sbjct: 778 ---IQNRIDFARKNGYSETLLK-----------------------RRRYIKEINSQNHSE 811

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
            +      R          + +Q  + DI+   M+              I+L VHDEI+ 
Sbjct: 812 RS---GAERIAI------NSTIQGSASDIMKIAMVRVYNEFKSKNLKSKILLQVHDEILI 862

Query: 635 ETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+P  +   A  ++  +M +   +   LPL+      K + 
Sbjct: 863 ESPKQECEEAKTIIKEMMENA--YPLKLPLRINIETGKSWG 901


>gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058]
          Length = 949

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 95/692 (13%), Positives = 191/692 (27%), Gaps = 144/692 (20%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEA 60
             D ET S              +  ++  +F  +           D      + +     
Sbjct: 375 CFDTETTSLD----------TFEAQIVGLSFAVEPQKAYYVALPDDKQKTEEILRRFAPL 424

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA-LK 117
           LE+  +     N  ++ +VL     + +   R   T++            +  + E  L 
Sbjct: 425 LEDASIEKTGQNMKYDISVLGNY-GIGV-GGRMFDTMIAHYLLQPELRHNMDYMAEVFLG 482

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +    E  +        +  +      +   +       +Y   D  +T ++      
Sbjct: 483 YRTIHFGELFD-------DDKTKKSGKPIEDIRKVELGKLKDYACEDADITLQLKNIFGQ 535

Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +   +   G  +D     +  + +  E  K+++++ +   
Sbjct: 536 KLCESSLKNLFFDIEMPLVPILAKMESNGVLIDDFALASYAETLKRELQKIERDILA-YV 594

Query: 228 GLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMR 282
            L  +    +++   LF    +      T+T    T +  L   +   P    +  +R  
Sbjct: 595 DLPINISSPKQIGELLFERLRIVEKPTKTKTGQYRTDEETLQKLRNRHPIIKLILEHR-G 653

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +     +  L + +N       T        TGR S      QN+P       E    
Sbjct: 654 LKKLLSTYVEALPKLINPKTNKIHTSFNQTVVSTGRLSSSNPNLQNIPVRDDYGRE---- 709

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R   IA  G  L+ AD + +E R++A ++G++  L AF
Sbjct: 710 ---------------------IRKAFIAEPGCVLLSADYSQVELRIMAHLSGDRNMLSAF 748

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            +G+D++  T AR F V   +VT D R   K     + Y   A        +  L++   
Sbjct: 749 ASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIYGISA-----FGLSERLDIPRK 803

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 +   E + D + +     E    +       G   +        +++ V     
Sbjct: 804 EAAALIDGYFESFPDVKRYMEQAIEEARRNGSVQTLFGR--KLYLPDINSQNAGVRGF-- 859

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +        G A    K   + +    +                     N RS +  
Sbjct: 860 -AERIAINAPIQGTAADIIKIAMIKVDEAIRH-------------------HNYRSQM-- 897

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
                                          M+              DE+V   P  +  
Sbjct: 898 -------------------------------MLQVH-----------DELVFNVPTEEVD 915

Query: 643 NASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
                + H M +  S    +PL  +      +
Sbjct: 916 EFRQSVKHAMETAAS--LRVPLIVDIGIGHNW 945


>gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1]
 gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1]
          Length = 905

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 106/705 (15%), Positives = 208/705 (29%), Gaps = 169/705 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVLKE-- 59
            +  D ET             Y +D  ++ F+F F+D         H    +P  + E  
Sbjct: 336 IVAFDTETTGLD---------YEKD-KLVGFSFSFNDDEAFYVPFAHFYLGVPDQISEKD 385

Query: 60  -ALENTDV---TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            AL    +    +V HN  F+   +    N D+ ++ +  +++LA      SAL     +
Sbjct: 386 AALAMKKIFNSKVVGHNIKFDLHFVSRFLNDDM-LNIYSDSMILAWLINPESALGLDKLS 444

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            KL    M   K+ +              + +           +Y   D  +T ++F   
Sbjct: 445 DKLLDHTMLGFKDTVK-------------KGETFASVELEDASKYAAEDAYITLKLFNLF 491

Query: 176 EPLSSKEQELWYLDQT-------------INDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                 +     +D++             +   G  VD          V      L + +
Sbjct: 492 NEKLKLQDATHLIDESQNVEVPFITTLLGMEKDGIRVDAEFLEVFLVEVKETLLNLTKTI 551

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
                    +    ++L   LF   GL +   T+   +T + VLSS K        +   
Sbjct: 552 YEQAGT-EFNINSTKQLGVILFEHLGLPVGKKTKTGYSTDENVLSSLKDKHEIISSLLEY 610

Query: 280 RMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           R    +     +  L++    + +GR+  +    G + TGR S      QN+P  +    
Sbjct: 611 R-EIYKLYSTYIEPLLKLSLEDKEGRIHTSFVQTG-TATGRLSSKNPNLQNIPARTSQGL 668

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +                         +R   +A EGKKL+  D + IE R+LA  + +  
Sbjct: 669 K-------------------------IREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAV 703

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF   +D+++ T    F     +    +RA+ K +   L Y                
Sbjct: 704 LVDAFRANKDIHLQTAIALFG---EEEAPSKRAVAKTVNFGLLY---------------- 744

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                            + +          + + + + +    V
Sbjct: 745 ----------------------------GMGQKKLSETLGITTKEAKEIIEKYFESFPTV 776

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
              +  +    ++        + ++RR                  P  R           
Sbjct: 777 KTYFRSIVDNSKEM--GYVETLLKRRRYFDYETAS----------PMFR----------- 813

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
                          Y  +   ++ Q  + D++   M          K    ++L +HDE
Sbjct: 814 -------------AAYDRESVNSVFQGSASDLIKLSMNKIATVIKEEKLNAKMLLQIHDE 860

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           ++ E    +          +M +       +PL+A       + K
Sbjct: 861 LIFEVDADEAEMLGNRFKEIMENIYE--LNIPLEASMNIGDNWGK 903


>gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3]
          Length = 502

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 196/504 (38%), Positives = 284/504 (56%), Gaps = 19/504 (3%)

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
           ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L   +
Sbjct: 5   ELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQHI 64

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
               G+ L D+  +T QR ++    + P   ++ + R+++  ++  K   L++++++DGR
Sbjct: 65  ASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGR 123

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIIS 361
           LRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D +Q+ S
Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARS 416
             +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF   ++      Y   YAR+
Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARA 243

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N  P    
Sbjct: 244 FNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVKR 303

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
           +A  + +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q I++  
Sbjct: 304 EAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSPG 362

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR---SYLNT--TTRQLTREY 591
                ++     + +++DK  L + LPSGRSL Y          +Y+ T   +R+  R  
Sbjct: 363 IAFKCRK-----LSVRRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPYSRKWERLK 417

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
           TYGGK+ ENI Q+ +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L+
Sbjct: 418 TYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLL 477

Query: 652 TSNPSWAKGLPLKAEGYESKRYRK 675
           + N  WA  LPL A G+E+ RYRK
Sbjct: 478 SFNSDWAWDLPLSANGFETYRYRK 501


>gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277]
 gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277]
          Length = 863

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/688 (14%), Positives = 192/688 (27%), Gaps = 167/688 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMPQVLK 58
           +  D ET               ++  ++ F+F F+D         H+         +   
Sbjct: 303 VAFDTETT----------DVDTQNARLVGFSFCFNDEEAYYVPVSHEYLGAPKQASEKFA 352

Query: 59  EALENTDVTI---VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVG 113
                + +     +  N  ++  V+K    L+ P   +  T++LA      S+  + A+ 
Sbjct: 353 AW-AISQIYKGCVIGQNLKYDFKVVKRNLGLE-PPVNFKDTMILAWLMDPGSSVGMDALA 410

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           + L                       E +  R +     A     +Y   D  +T + +K
Sbjct: 411 KRL---------------YDYDTIKFEDVVKRGETFASVALENAAKYAAEDAWITLKFYK 455

Query: 174 RLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
               L            E         +   G  ++      L    D +   L  E+  
Sbjct: 456 SFLNLLDPELLALADTHEFAFILTLFDMEREGIAINREKMQNLILRNDAKIKALTSEIYE 515

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
           LT     +   +++L + LF    L ++  T+   +T + VL+      P   ++   R 
Sbjct: 516 LTG-ENFNINSVKQLGSVLFEHLKLPVKKKTKTGYSTDEAVLAELIDEHPVIEKLLEYR- 573

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +        L+     D   R    F    + TGR S      QN+P          
Sbjct: 574 ELYKLQSTYCEPLLNLAKKDANSRIYTNFIQTGTSTGRLSSKNPNLQNIPARGA------ 627

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                              ++  VR C  A      V  D + IE R+LA  + ++  L+
Sbjct: 628 -------------------LAKDVRGCFEAKSDFSFVGLDYSQIELRLLAHFSRDEALLR 668

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF   ED++  T    F  A        RA+ K +   L Y  G+               
Sbjct: 669 AFANDEDIHARTAISIFGSAE----GQNRAVAKSINFGLIYGMGSSKL------------ 712

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A +        +   + + +    +   
Sbjct: 713 --------------------------------ANQVSITRAEAKEYIERYFKAFPTIKGF 740

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +  A +                              +    GR  ++          
Sbjct: 741 LEGIKTAAKN--------------------------EGFVRTLLGRKRLF---------- 764

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---GYDIVLTVHDEIVCETP 637
           + TT    +   Y  +    I Q  + DI+   M+           ++L +HDE++ E  
Sbjct: 765 DFTTATPMQTAMYEREAVNTIFQGSAADIIKMAMVKIRPLLSPRARMLLQIHDELIFEVQ 824

Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLK 664
           D       +    +M     +   + LK
Sbjct: 825 DGYAEEFGAAAQKIMQEI--YKLNVLLK 850


>gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 896

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 100/695 (14%), Positives = 200/695 (28%), Gaps = 150/695 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S              +  ++  +F   +         H            ++ 
Sbjct: 322 AFDTETDSLN----------TYEANLVGLSFCAKEGRAYYIPLQHRYLGVPQQLELEIVL 371

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +LK    ++  + VAHN  F+  VL     + I +++   T+++A              
Sbjct: 372 DILKPIFVDSQKSKVAHNFKFDEKVLSKY-GVKI-VNQVNDTMIMAYVLKSSGKHDMDSL 429

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +      K   G E IA      T            +       +Y   D  +T  ++  
Sbjct: 430 S------KEHLGIEPIAY----TTLAGTGRNQLTLDQIDIEKVAKYAAEDADITFRLYNH 479

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
              +   ++ L+ L   +              G  +D       +  ++    +L+ +  
Sbjct: 480 FLKMLKDDEVLYSLYSNVEMPLTIILNNMERIGVKIDATKLIEQSANLEDSIKELEIKCY 539

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L      +     +L+  LF + GL     T     +T + VL    +    A  +   
Sbjct: 540 DLAGQ-EFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQLAEEYEIAALIMKY 598

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++ +GR+  +    G + TGR S      QN+P  S    + 
Sbjct: 599 RH-LSKLKNTYTDKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 655

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A +   +V AD + IE R++A ++ ++  L
Sbjct: 656 ------------------------IRQAFVAEQEFCVVAADYSQIELRIMAHLSKDKNLL 691

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF  G D++  T A    ++   VT +QR   K +   L Y   A           L +
Sbjct: 692 KAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSA-----FGLAKQLEI 746

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    +     +   + +    +E   ++   +  +G                V +
Sbjct: 747 PRGEAQEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPDI----SSKNVIQ 802

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             N   +A       G A    K+  + +  M   + N                      
Sbjct: 803 -RNAAERAAINAPMQGTAADIIKKAMIDVNTMILREYN---------------------- 839

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                                       D +   M                 +V E    
Sbjct: 840 ----------------------------DDIKMVM-QVHDE-----------LVFEVRKA 859

Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 + +  +M ++      +PL+      + +
Sbjct: 860 KLNEITTKIKSIMETSVK--LDVPLEVNVDSGESW 892


>gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter sp. Re1]
 gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter sp. Re1]
          Length = 864

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 196/705 (27%), Gaps = 175/705 (24%)

Query: 6   IDFETR--------------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD- 50
            D ET                        +   AE   ++  ++  D          +  
Sbjct: 295 FDTETTQNIEDNNALQKLVKKINSSKNIAVLVDAEKKDLV--SYATDG---IYISVENKC 349

Query: 51  ----PVMPQV------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
                 + +       LK+ LE+T +  + H+  F R VL     +D        T++ A
Sbjct: 350 YFISHKLLKENSSISFLKQILEDTAIYKITHDGKFTRNVL-RQLGIDFRCQ--FDTMLAA 406

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                            +    ME   + ++     +         K    E  +     
Sbjct: 407 YLLESSK------PRYDIPILVMEYLGKTMSDIPSFDEKTSYLFELKKIMDEKIKD---- 456

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           C  D     ++F         E     +   +   G  VD A    L++    +   L +
Sbjct: 457 CLMD-----KLFY------EVEMPFSVVLADMEHAGIKVDFAKLQELSERFGKKLAALTE 505

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           E+  L      +    ++L   LF +  L +   T+   +T   VL   +   P   ++ 
Sbjct: 506 EIYDLAGT-EFNINSPKQLGEILFEKLSLPVIKRTKTGYSTDAEVLEKLRPSHPIIEKIL 564

Query: 278 NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             R    +      + L   ++   GR+  +      + TGR S      QN+P  +   
Sbjct: 565 EYRF-LMKMKSTYADGLSALVDKKTGRIYTSFNQ-TVTSTGRISSTEPNLQNIPVKTEEG 622

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
           +                          +R    +   G  L+  D + IE RVLA M+ +
Sbjct: 623 KH-------------------------IRGVFTSDGPGHVLLSGDYSQIELRVLAHMSQD 657

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++AF +GED++  T +  F V P +VT   R   K +   +                
Sbjct: 658 PGLIEAFVSGEDIHRRTASEVFGVPPEEVTPLLRDKAKAVNFGII--------------Y 703

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++    A                                        +    A+  ++ 
Sbjct: 704 GISDYGLAQ------------------------------NLGISNQEAKEYIDAYFARYP 733

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +   E  ++ +                              +     R     D+ +
Sbjct: 734 GVRDYIRETIRSAK--------------------------ALGYVTTLLNRRRYIPDINS 767

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
                        R            +Q  + DI+   M+              I+L VH
Sbjct: 768 RN---YHLRSFAERTA------VNTPIQGSAADIIKIAMVKVHDNLRQNNLKAKILLQVH 818

Query: 630 DEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE++ + P+ +      +    M +       +PL  +  +   +
Sbjct: 819 DELILDVPEEELTAVKEILKQHMENAIP--LRVPLVVDFKQGYNW 861


>gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 880

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 94/654 (14%), Positives = 182/654 (27%), Gaps = 125/654 (19%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPI 90
           L  F   +     +      V  +V KE  EN +      +S   R V+      +++  
Sbjct: 336 LLGFSIVNETGSYFIPKDIAVESEVFKEWAENDEQKKWLFDSK--RAVVALRWQGIELKG 393

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                TL+ A      ++   V    K     +       + + KG       +     H
Sbjct: 394 AE-FDTLLAAYIINPGNSYDDVASVAK--DYGLHIVSSDESVYGKGAKRAVPSEDVLSEH 450

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                L  +  +  +    E   +LE     E  L  +   +   G  VDV     + + 
Sbjct: 451 LVRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEE 510

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
           +  +  + ++++  +      +    ++L   LF + GL +   T+   +T   VL    
Sbjct: 511 LGAKLKEYEEKIHEIAG-EPFNINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLA 569

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   +   R    +     +  L++    D     T      ++TGR S      Q
Sbjct: 570 DKHDIVDYILQYRQ-IGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRLSSTDPNLQ 628

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEA 386
           N+P       +                         +R   + SE    +  AD + IE 
Sbjct: 629 NIPIRLEEGRK-------------------------IRQAFVPSEKDWLIFAADYSQIEL 663

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA ++ +Q  ++AF    D++  T    F+VA  +VT   R   K +           
Sbjct: 664 RVLAHISKDQNLIEAFTNDMDIHTKTAMDVFHVAEDEVTSAMRRQAKAVNF--------- 714

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++    +                                           
Sbjct: 715 -----GIVYGISDYGLSQ------------------------------NLGITRKEAGAF 739

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + +    V         + +   + G                              R
Sbjct: 740 IDQYLESFQGVKAYM---EDSVQDAKQKGYVTTLMH-----------------------R 773

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                ++ +             R            +Q  + DI+ + M++          
Sbjct: 774 RRYIPELTSRNF---NIRSFAERTAMNTP------IQGSAADIIKKAMIDMAAKLKEKQL 824

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 825 KARLLLQVHDELIFEAPQEEIEILEKLVPEVMEHA--LALDVPLKVDFASGPSW 876


>gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063]
          Length = 939

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 93/699 (13%), Positives = 207/699 (29%), Gaps = 151/699 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------------P 51
            ID ET S   +             ++  +  +           H               
Sbjct: 358 AIDTETNSLDTMV----------ANLVGISLSYRPGEAFYIPIGHQNKSDPSIKKQLKLK 407

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            +  V+K  LE+  V  V  N  ++  +        I ++    T++++ S         
Sbjct: 408 DVLSVIKPYLEDPTVKKVGQNIKYDYRIFLKH---GIQMNSIEDTMLMSYSLDAGKN--- 461

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                +     + E   L  +    +    +                +Y   D  +T  +
Sbjct: 462 -----RHGMDLLSELH-LNHKTISFKDVAGIGKSQVTFDFVDIEQAKDYACEDADITLRL 515

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +K  E     E          + L  +  ++ + G  +D  +   L++  ++E   L+++
Sbjct: 516 YKMFEKRLFNENVLGVYDNLEKPLIKILSSVENNGIKIDKNILEKLSKKFEIEIQNLEKK 575

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVF 277
           +  +      +    ++L   ++ +  +     T+     T   VL        +  ++ 
Sbjct: 576 IFKI-AKEEFNIGSPKQLGDVIYEKLKIAGSKKTKKGNFATNVAVLEDLASQGHEFPKLV 634

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            N  + S+      +TL   +N+  +   T   L A+ TGR +      QN+P  +   +
Sbjct: 635 LNWRQKSKLKNTYTDTLPTYINAKSKRVHTSFLLAATTTGRLASANPNLQNIPIKNIEGK 694

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           E                         +RS  ++ +  KL+ AD + IE R+LA M   + 
Sbjct: 695 E-------------------------IRSAFVSDKNSKLISADYSQIEMRILAHMGDVKE 729

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             KAF   ED++  T ++ F+V+  +V +D R   K +   + Y               +
Sbjct: 730 LKKAFLNKEDIHTLTASQIFDVSLKKVDEDMRRKAKAINFGIIYGIS-----SYGLAKQI 784

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +++         S   ++ +  +F         ++          C      +   + + 
Sbjct: 785 SVSNSEAENFLKSYFGKFPEIRDFMNENITFCRKNGYVKTLFDRKCH-----FPNINDKN 839

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             L     +A       G A                                       R
Sbjct: 840 HTLRTFQERACINAPIQGTAADLL-----------------------------------R 864

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
             +    +++                  +++I A  ++                ++ E  
Sbjct: 865 LAMIQIDKKI-----------------SAKEIPASLLIQVHDE-----------LLLECK 896

Query: 638 DTDEFNA-SMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
           + D  +    + H M +   P     +PL  +    K +
Sbjct: 897 EKDVSSVQQKIAHEMENASEPLVKFSIPLTVDVKSGKNW 935


>gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR]
 gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR]
          Length = 886

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 93/665 (13%), Positives = 196/665 (29%), Gaps = 151/665 (22%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEALE---NTDVTIVAHNSYFERT-VLK 81
              ++  A+  +           + + P   L   L+    T   +  H++   RT +L 
Sbjct: 347 SAGILGLAWSAEPGSGGY--LAGEELQPADKLTRILDTVLWTKGWVCFHDAK--RTDILL 402

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                  P+     T++ A       + L     ++K   Q++  G++         +  
Sbjct: 403 RRLGNK-PVRAGFDTMLAAYLLDPSVSNLDLAALSIKYLGQELSPGED-------YRSFC 454

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
              D              E    D      ++         E  L ++   +   G  +D
Sbjct: 455 AQADIILRLVPVLHEKLAELNMLD------LYF------DVEMPLLHILADMEFSGVKLD 502

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 ++  +  E  ++  ++  L      +     +L T LF + GL +   T+   +
Sbjct: 503 KEYLEAMSVDLSTEIDRITGDIYRLAG-EEFNINSTRQLGTILFEKLGLPVIKKTKTGYS 561

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRT 316
           T   VL +  +      +V + R    +     ++ L+  +N   G++  T      + T
Sbjct: 562 TDVEVLETLAERHEIVARVLHYRQ-LVKLKSTYVDGLIPLINPVTGKVHTTFNQ-TVTAT 619

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKK 375
           GR S      QN+P                                 +R   +    G  
Sbjct: 620 GRLSSTEPNLQNIPIRMEEGRR-------------------------IRKAFVPSEPGWI 654

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           ++ AD + IE R+LA ++G++  ++AF   ED++  T A  F V+  +VT + R+  K +
Sbjct: 655 ILSADYSQIELRILAHLSGDERFVQAFRNDEDIHTRTAAEVFGVSLEEVTGEMRSRAKAV 714

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y               ++++         +    +   + +         E    
Sbjct: 715 NFGIVYGIS-----DFGLAKNISVSRKEARQYIENYFARYAGIKKYLEETVRLAREQGYV 769

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                                                         +RR +P +      
Sbjct: 770 TTL-----------------------------------------LNRRRYLPDILSPNRN 788

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                                R+ +NT                   +Q  + DI+   M+
Sbjct: 789 IRSF---------------GERTAMNT------------------PIQGSAADIIKLAMV 815

Query: 616 NATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
                         ++L VHDE++ E P  +    + +    M +       +PLK +  
Sbjct: 816 RVADCLKKEGLKARMLLQVHDELIFEAPPEELPKVTGIVRECMENTVK--LTVPLKVDMK 873

Query: 669 ESKRY 673
           +   +
Sbjct: 874 KGFNW 878


>gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
 gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000]
          Length = 931

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 95/705 (13%), Positives = 211/705 (29%), Gaps = 168/705 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----- 56
             + IDFET     LT            +I  +F          D      + +      
Sbjct: 360 KLVCIDFETTGLDTLTD----------EIIGISFAIKSKEAFYLDLSGRTNIDKEACKKL 409

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLP---SALKAV 112
           + + L   D+ I+ HN  +E  +++A   +D  +   +  T+V A           +  +
Sbjct: 410 VFDTLAKEDIKIIGHNLKYEYKMMRA---IDKKMGNMYFDTMVAAYLINPSRGRYNMDDL 466

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             +             L     K         +         +   EY   D  +T   +
Sbjct: 467 ALSY------------LSYNTIKYSDITDNAKKTLL--DVELKDVVEYACEDADITFRFY 512

Query: 173 KRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +   PL +              L  +   +   G  +      +L++       K   ++
Sbjct: 513 EYFAPLLNTYNLEDLFFNVEMPLISVLADMEFDGVYISTEKMKSLSEEYASLLEKTKAKI 572

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFN 278
                    + +  ++L+  LF +  ++    T+    +T + VL    +    A  +  
Sbjct: 573 YEKAG-EEFNLQSPKQLEYILFEKLKINSTKKTKTGAYSTDEEVLRELAQREKIAEYMLT 631

Query: 279 NRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            R + S+     L+     ++    R+  +      + TGR S      QN+P      +
Sbjct: 632 YR-KYSKLKNTYLDVFPTLVHKKTNRIHASFNQ-TVTATGRLSSSEPNLQNIPARGDEGK 689

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +                         +R+  IA +G  L+ AD + IE R+LA  + +  
Sbjct: 690 D-------------------------IRNTFIAEKGNVLIAADYSQIELRLLAHFSNDPV 724

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF+  +D++  T  + ++V+   VT   R   K++  ++                  
Sbjct: 725 LVEAFKNNDDIHRKTAMKIYSVSKEHVTPSMRNTAKIINFSII----------------- 767

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                        +     + E        +   K +   +S+V
Sbjct: 768 ---------------------------YGKTAFGLSKELNISRKEADDFIKGYFSTYSQV 800

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD-VGNN 576
                ++ +  +                              +    GR       + ++
Sbjct: 801 KPFCEKVIEDVK--------------------------AKGYVRTMLGRIRDLSKTINSS 834

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHD 630
            + +     +  R           ++Q  + D++   M+   K          IV+ VHD
Sbjct: 835 NAVVRN---EAERMA------LNTLIQGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHD 885

Query: 631 EIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E+V E  + +   A  +   +M  +      +P+  + ++   + 
Sbjct: 886 ELVVEVSEKESDKAMTIMKEIMEHSVK--TNVPITVDIHKGLSWG 928


>gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116]
 gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94]
 gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1]
 gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 879

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 95/702 (13%), Positives = 216/702 (30%), Gaps = 173/702 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET               ++  ++ F+F   ++        H        +  Q 
Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQS 367

Query: 57  LKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALK 110
            K+A+E   V      + HN  ++  +++  F L++P  ++  T++LA          + 
Sbjct: 368 AKKAIE---VIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMD 423

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +   L+L + +    + L+              + +           +Y   D  +T  
Sbjct: 424 DLA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLR 468

Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            +                  E +   +   + + G  +D      L +  + E   L +E
Sbjct: 469 FYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEE 528

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           + +L      +    +++   LF +  L      +   +T ++VL++     P   ++ +
Sbjct: 529 IYTLCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILD 587

Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            R   ++        L++    + + R+  +    G + TGR S      QN+P   +  
Sbjct: 588 YR-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYA 645

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           ++                          +SC +A +G   +  D + IE R+LA  + ++
Sbjct: 646 KDY-------------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDE 680

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF   ED++  T    F     +   + R++ K +                    G
Sbjct: 681 KLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFG--------------LIYG 722

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +   T +  +K  +                                 +   + + +  + 
Sbjct: 723 MGYKTLSQNLKIEAHL------------------------------AKSYIEKYFENFTS 752

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           + + +  +    +Q                          N  +   SGR   +      
Sbjct: 753 IKKYFETVKNKAKQ--------------------------NGFITTLSGRKRYFDFENAK 786

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIV 633
                           Y  +   +I+Q  + D++   M+   K       ++L +HDE++
Sbjct: 787 PMQ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELI 836

Query: 634 CETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            E  D    N       +M +       + LK     +K + 
Sbjct: 837 FEVKDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876


>gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 896

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 101/695 (14%), Positives = 200/695 (28%), Gaps = 150/695 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S              +  ++  +F   +         H            ++ 
Sbjct: 322 AFDTETDSLN----------TYEANLVGLSFCAKEGRAYYIPLQHRYLGVPQQLELEIVL 371

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK    ++  + VAHN  F+  +L     + I +++   T+++A              
Sbjct: 372 DSLKPVFVDSQKSKVAHNFKFDEKILSKY-GVKI-VNQVNDTMIMAYVLKSSGKHDMDSL 429

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +      K   G E IA      T            +       +Y   D  +T  ++  
Sbjct: 430 S------KEHLGIEPIAY----TTLAGTGRNQLTLDQIDIEKVAKYAAEDADITFRLYNH 479

Query: 175 LEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELE 223
              +   ++ L+ L   +              G  +D A     +  ++    +L+ +  
Sbjct: 480 FLKMLKDDEVLYSLYSNVEMPLTIILNNMEKVGVKIDAAKLIEQSANLEDSIKELEIKCY 539

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
            L      +     +L+  LF + GL     T     +T + VL    +    A  +   
Sbjct: 540 DLAGQ-EFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQLAEEYEIAALIMKY 598

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   S+      + L + ++ +GR+  +    G + TGR S      QN+P  S    + 
Sbjct: 599 RH-LSKLKNTYTDKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKSPEGRK- 655

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   IA +   +V AD + IE R++A ++ ++  L
Sbjct: 656 ------------------------IRQAFIAEQEFCVVAADYSQIELRIMAHLSKDKNLL 691

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF  G D++  T A    ++   VT +QR   K +   L Y   A           L +
Sbjct: 692 KAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSA-----FGLAKQLEI 746

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    +     +   + +    +E   ++   +  +G                V +
Sbjct: 747 PRGEAQEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPDI----SSKNVIQ 802

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             N   +A       G A    K+  + +  M   + N                      
Sbjct: 803 -RNAAERAAINAPMQGTAADIIKKAMIDVNTMILQEYN---------------------- 839

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                                       D +   M                 +V E    
Sbjct: 840 ----------------------------DDIKMVM-QVHDE-----------LVFEVRKA 859

Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 + +  +M ++      +PL+      + +
Sbjct: 860 KLNEITTKIKSIMETSVK--LDVPLEVNVDSGESW 892


>gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511]
 gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511]
          Length = 904

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 111/706 (15%), Positives = 210/706 (29%), Gaps = 175/706 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET                   ++ F+F F++         H      P +  + 
Sbjct: 335 VVAFDTETTGLD----------TRSAKMVGFSFAFEEEKAYYVPVAHSYLGVGPQVSLEA 384

Query: 57  LKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113
            K+A+E      IV  N  F+ ++L +   ++ PI     T++LA      S   L  + 
Sbjct: 385 AKKAIEKLMRHRIVGQNLKFDLSLLYSHLEME-PIEPEADTMILAWLLDPGSRVGLDILA 443

Query: 114 -EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            + L    +  +E                   + +     A      Y   D   TR+++
Sbjct: 444 QKFLGYQMKSFKE----------------TVKKGEDFSSVALEEAAFYAAEDAWATRQLY 487

Query: 173 -------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                          L+     E     +   +   G  VD     +L + +  E  +L 
Sbjct: 488 FRLTELFKKGGLEHLLKEAKEVEFPFINVLIAMERLGIRVDTKHLRSLKEELSAELARLT 547

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQV 276
           QE+ +L      + +  ++L   LF   GL     T+   +T + VL +     P   ++
Sbjct: 548 QEIHTLAGT-EFNIKSTQQLGNVLFGTLGLKGGKKTKTGYSTNESVLRNLIGEHPIVEKI 606

Query: 277 FNNRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
              R    +     ++ L++    + +GR+  T    G + TGR +      QN+P  S 
Sbjct: 607 LEYR-EHQKMLSTYVDPLLKLAEKDPEGRIHTTFVQTG-TATGRLASKDPNLQNIPVRSE 664

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        VR   +A EG +L   D + IE R+LA  +G
Sbjct: 665 LGRR-------------------------VRRAFVAQEGFRLASIDYSQIELRLLAHFSG 699

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +    +AFE GED+++ T  + F                    A                
Sbjct: 700 DAALREAFEKGEDIHMATAIKLFG---------PEEAAAKRNFA--------KSINFGLL 742

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                                 + A E        + + +A+    
Sbjct: 743 YGMG------------------------------SRKLADELGITTKEAKEIIEAYFAAF 772

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V     ++ Q  ++  +     +                          R     D  
Sbjct: 773 PTVRSYLEQIQQQAKE--QGYVETLL-------------------------RRRRVFDYE 805

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAG--YDIVLTV 628
                +               +    + Q  + D++   M++      + G    ++L +
Sbjct: 806 GASGMMK---------AAILREAVNTVFQGSAADLIKLAMLDIDTMIREEGLEARMLLQI 856

Query: 629 HDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE++ E P+   E  A+   H M     +   +PLK        +
Sbjct: 857 HDELIFEIPEAQAEETAARFRHTMEHI--YPLEVPLKCSVSLGGSW 900


>gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92]
 gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92]
          Length = 879

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 105/699 (15%), Positives = 190/699 (27%), Gaps = 167/699 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVLKEAL 61
            +  D ET               +   ++ F+F F+D         H     P+ +    
Sbjct: 318 IIAFDTETT----------DIDTQSAKLVGFSFCFNDENAYYVPVAHSYLGAPKQVGTDF 367

Query: 62  EN---TDVTI---VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113
                  +     V  N  ++  V+K    L+ P  ++  T+VLA          + A+ 
Sbjct: 368 AAWAVGQIYKGCVVGQNLKYDFKVVKRNLGLE-PPVKFKDTMVLAWLADPSQAVGMDALA 426

Query: 114 EA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           +      + K E+                +  R +           +Y   D  +T + +
Sbjct: 427 KRLYNYDTIKFED----------------VVRRGETFASVPLENAAKYAAEDAWITLKFY 470

Query: 173 KRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           K    L            E         +   G  ++      L    D +   L  E+ 
Sbjct: 471 KSFLNLLDPALIELANAHEFPFILTLFDMESVGIAINKKKMQNLILQNDAKIKILTSEIY 530

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
            LT     +   +++L   LF    L ++  T+   +T + VL+          ++   R
Sbjct: 531 ELTG-ENFNINSVKQLGAVLFEHLKLPVKKKTKTGYSTDEAVLAELIDAHLVIAKLLEYR 589

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +        L+   N D   R    F    + TGR +      QN+P         
Sbjct: 590 -ELYKLQSTYCEPLLNLANKDENSRIYTNFVQTGTSTGRLASKNPNLQNIPARG------ 642

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                               ++  VR    A EG   V  D + IE R+LA  + ++  L
Sbjct: 643 -------------------SLAKDVRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAFE  ED++  T    F           RA+ K +   L Y              G+  
Sbjct: 684 KAFENDEDIHARTAISIFG----SADGQNRAVAKSINFGLIY--------------GMGS 725

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +  A  V                                     +   + + +    +  
Sbjct: 726 SKLAGQVNI------------------------------SRAEAKEYIERYFKAFPTIKG 755

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               +  A +                              +    GR   +         
Sbjct: 756 FLEGIKTAAKN--------------------------EGFVRTLLGRKRFFDFTNATPMQ 789

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---GYDIVLTVHDEIVCET 636
                        Y  +    I Q  + DI+   M+           ++L +HDE++ E 
Sbjct: 790 ----------TAMYEREAVNTIFQGSAADIIKLAMVKIRPLCSVRAKMLLQIHDELIFEV 839

Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            D            +M     +   +PLK     +K + 
Sbjct: 840 ADEHAAEFGEAAQKIMQEI--YKLNVPLKTSLNVAKNWG 876


>gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1]
 gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1]
          Length = 875

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 90/657 (13%), Positives = 200/657 (30%), Gaps = 126/657 (19%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             +I F     +     +    D +  +  K+ +E+       +++      L+    +D
Sbjct: 330 GEIIGFGLK--NEKGLFFLRAEDALSSEAFKKWVEDESKIKHVYDAKRSIVALRRY-GID 386

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +        L+++        ++      K       E  E +  + KG   +   ++  
Sbjct: 387 LRGTD-FDLLLVSYLLNPSDTVEDFASVAKTHDYGNVETDEAV--YGKGAKRKLPEEKRY 443

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
             H        +      T   +   +LE     E  L  +   +   G  VD      +
Sbjct: 444 AEHISRKAEAIDALCEPCTKALKNNGQLELFEQLELPLSLILADMEYTGVKVDTDRLKEM 503

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
            +   +   +++Q + S+      +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 504 GEEFKLRLHEIEQRIYSMAGT-EFNINSPKQLGVILFEKMGLPVIKKTKTGYSTSADVLE 562

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             +       ++ + R    +     +  L++ ++ DG++         ++TGR S    
Sbjct: 563 KLEPAHEIVREILHYRQ-LGKLQSTYIEGLLKVVHQDGKVHTRFNQA-LTQTGRLSSTDP 620

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAG 383
             QN+P       +                         +R   +   EG  +  +D + 
Sbjct: 621 NLQNIPIRMEEGRK-------------------------IRQAFVPSEEGWLIFSSDYSQ 655

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E RVLA ++G++  ++AF  G D++  T    F+V   +VT + R   K +   + Y  
Sbjct: 656 VELRVLAHISGDEKLIEAFREGMDIHTKTAMEVFHVKAEEVTSEMRRQAKTVNFGIVYGI 715

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                     +  L ++              +   + +   +     +            
Sbjct: 716 S-----DYGLSQNLGISRKEAGEFIKRYFASYPRVKEYMDEIVREAKQKGYVSTL----- 765

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                                                ++RR +P +  +           
Sbjct: 766 ------------------------------------LKRRRYLPEITSRNFNLRSF---- 785

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617
                        R+ +NT                   +Q  + DI+ + M++       
Sbjct: 786 -----------AERTAMNTP------------------IQGSAADIIKKAMIDMAKRLKK 816

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            K    ++L VHDE++ E P+ +      +   +M      A   PLK +      +
Sbjct: 817 EKLRARLLLQVHDELIFEAPEEEIEVLKEIVPEVMEHAVDLAA--PLKVDSAYGPTW 871


>gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14]
 gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14]
          Length = 1014

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 97/693 (13%), Positives = 193/693 (27%), Gaps = 166/693 (23%)

Query: 27   DVCVILFAFGFDDHPVELWDCVHDP--------------------VMPQVLKEALENTDV 66
               +   A     +        H                          +LK  LE+   
Sbjct: 438  QAELSGIALALAPNAACYVPLNHKQAGDSAGLFAAGLAPDQIAIRDALDLLKPLLESGGH 497

Query: 67   TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKM 123
              V  N  F   VL A   + +  +      +++ +         L+A+ +         
Sbjct: 498  LKVGFNVKF-TAVLLAQHGIVMQNN--DDVELISYALDAGRGAHDLEALAQR-------- 546

Query: 124  EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---- 179
                 L                     +        Y      +T  +++ L+P      
Sbjct: 547  ----WLDHTALNYGELIGSGRNKLAFDQVTIDRATTYAAEYAALTLRLWQVLKPRLVAER 602

Query: 180  ------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                  + E+ +      +  RG  +D  +   L+        +L+ E++ L    + + 
Sbjct: 603  MNSVYETLERPMIATLARMERRGITIDRQVLSRLSGEFAQTAARLEAEIQKLAGEPI-NV 661

Query: 234  RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               +++   +F + GL     T+    +T  ++L    +      +   +  + S+    
Sbjct: 662  GSPKQIGEIMFGKMGLPGGSKTKTGAWSTSAQILDDLAEQGHDFPRKILDWRQVSKLKST 721

Query: 290  KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
              + L E +N       T   L A+ TGR S      QN+P  +    +           
Sbjct: 722  YTDALPEYVNPQTSRVHTTYALAATTTGRLSSNEPNLQNIPVRNEEGRK----------- 770

Query: 350  ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                          +R   IA+ G KLV AD + IE R+LA +A      +AF  G D++
Sbjct: 771  --------------IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIH 816

Query: 410  VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              T +  F V    +  + R   K +                    G++           
Sbjct: 817  AMTASEMFGVPVTGMPGEIRRRAKAINF--------------GIIYGIS----------- 851

Query: 470  SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                   A +            K + ++   +    +       
Sbjct: 852  -------------------AFGLANQLGIPREEAGTYIKKYFERFPGIRAYMDATRDFCR 892

Query: 530  QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
            +                          +  +    GR   Y D+ +      +      R
Sbjct: 893  E--------------------------HGYVETLFGRKCHYPDIKSPNP---SHRAFNER 923

Query: 590  EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643
                         Q  + DI+   M+         K    ++L VHDE++ E PD +   
Sbjct: 924  AAINARL------QGTAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDDEVAA 977

Query: 644  -ASMLYHLMTSN--PSWAKGLPLKAEGYESKRY 673
               ++ H+M     P+    +PL+ +   +  +
Sbjct: 978  TLPVVQHVMQDAPFPAMLLSVPLQVDARAADNW 1010


>gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336]
          Length = 879

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 91/701 (12%), Positives = 213/701 (30%), Gaps = 171/701 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM---- 53
            +  D ET               ++  ++ F+F   ++        H        +    
Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQS 367

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111
            +   E + N  V  + HN  ++  +++  F L++P  ++  T++LA          +  
Sbjct: 368 AKKAIELIFNHFV--IGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMDD 424

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +   L+L + +    + L+              + +           +Y   D  +T   
Sbjct: 425 LA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRF 469

Query: 172 FKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +                  E +   +   + + G  +D      L +  + E   L +E+
Sbjct: 470 YLYFLKNLEAPLLELAKNCEFDFIRIIMMMEENGIKLDTNALEALMKKFENEIKNLSEEI 529

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
            +L      +    +++   LF +  L      +   +T ++VL++     P   ++ + 
Sbjct: 530 YTLCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPIIPKILDY 588

Query: 280 RMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           R   ++        L++    + + R+  +    G + TGR S      QN+P   +  +
Sbjct: 589 R-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAK 646

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +                          +SC +A +G   +  D + IE R+LA  + ++ 
Sbjct: 647 DY-------------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEK 681

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF   ED++  T    F     +   + R++ K +                    G+
Sbjct: 682 LLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFG--------------LIYGM 723

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
              T +  +K  +                                 +   + + +  + +
Sbjct: 724 GYKTLSQNLKIEAHL------------------------------AKSYIEKYFENFTSI 753

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            + +  +    +Q                          N  +   + R   +       
Sbjct: 754 KKYFETVKNEAKQ--------------------------NGFITTLNSRKRYFDFENAKP 787

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVC 634
                          Y  +   +I+Q  + D++   M+   K       ++L +HDE++ 
Sbjct: 788 MQ----------IAMYERESINSILQGSAADVIKLAMLEIDKELNEDKKLILQIHDELIF 837

Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E  D    N       +M +       + LK     +K + 
Sbjct: 838 EVKDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876


>gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
 gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 879

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 94/699 (13%), Positives = 220/699 (31%), Gaps = 167/699 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET               ++  ++ F+F  +++        H        +  Q 
Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQS 367

Query: 57  LKEALENT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113
            K+A+E   +  ++ HN  ++  +++  F+L++P  ++  T++LA          +  + 
Sbjct: 368 AKKAIEAIFNHFVIGHNLKYDFKIIQNNFDLNLP-QKYADTMILAWLKNPSLRVNMDDLA 426

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L+L + +    + L+              + +           +Y   D  +T   + 
Sbjct: 427 --LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRFYL 471

Query: 174 RLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                            E +   +   + + G  +D      L +  + E   L +E+ +
Sbjct: 472 YFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYT 531

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
           L      +    +++   LF +  L      +   +T ++VL+      P   ++ + R 
Sbjct: 532 LCEDR-FNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYR- 589

Query: 282 RASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             ++        L++    + + R+  +    G + TGR S      QN+P   +  ++ 
Sbjct: 590 ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY 648

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                    +SC +A +G   +  D + IE R+LA  + ++  L
Sbjct: 649 -------------------------KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF   ED++  T    F     +   + R++ K +                    G+  
Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINF--------------GLIYGMGY 725

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
            T +  +K  +                                 +   + + +  + + +
Sbjct: 726 KTLSQNLKIEA------------------------------NLAKSYIEKYFENFTSIKK 755

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            + ++    +Q                          N  ++  SGR   +         
Sbjct: 756 YFEKVKNEAKQ--------------------------NGFIVTLSGRKRYFDFENAKPMQ 789

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCET 636
                        Y  +   +I+Q  + D++   M+   K       ++L +HDE++ E 
Sbjct: 790 ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEV 839

Query: 637 PDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            D    N       +M +       + LK     +K + 
Sbjct: 840 KDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876


>gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 879

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 95/702 (13%), Positives = 219/702 (31%), Gaps = 173/702 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET               ++  ++ F+F  +++        H        +  Q 
Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQS 367

Query: 57  LKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALK 110
            K+A+E   V      + HN  ++  +++  F+L++P  ++  T++LA          + 
Sbjct: 368 AKKAIE---VIFNHFVIGHNLKYDFKIIQNNFDLNLP-QKYADTMILAWLKNPSLRVNMD 423

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +   L+L + +    + L+              + +           +Y   D  +T  
Sbjct: 424 DLA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLR 468

Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            +                  E +   +   + + G  +D      L +  + E   L +E
Sbjct: 469 FYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEE 528

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           + +L      +    +++   LF +  L      +   +T ++VL+      P   ++ +
Sbjct: 529 IYTLCEDR-FNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILD 587

Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            R   ++        L++    + + R+  +    G + TGR S      QN+P   +  
Sbjct: 588 YR-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYA 645

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           ++                          +SC +A +G   +  D + IE R+LA  + ++
Sbjct: 646 KDY-------------------------KSCFVAKDGFSFISLDYSQIELRILAHFSEDE 680

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF   ED++  T    F     +   + R++ K +                    G
Sbjct: 681 KLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINF--------------GLIYG 722

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +   T +  +K  +                                 +   + + +  + 
Sbjct: 723 MGYKTLSQNLKIEA------------------------------NLAKSYIEKYFENFTS 752

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           + + + ++    +Q                          N  ++  SGR   +      
Sbjct: 753 IKKYFEKVKNEAKQ--------------------------NGFIVTLSGRKRYFDFENAK 786

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIV 633
                           Y  +   +I+Q  + D++   M+   K       ++L +HDE++
Sbjct: 787 PMQ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELI 836

Query: 634 CETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            E  D    N       +M +       + LK     +K + 
Sbjct: 837 FEVKDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876


>gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2]
 gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2]
          Length = 893

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 118/696 (16%), Positives = 211/696 (30%), Gaps = 151/696 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL 57
            ID ET S              D  ++  +  F           H       +  + + L
Sbjct: 321 AIDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           KE LE+    IV  N  F+  VL       +P H    T++ A           L  +  
Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPH--FDTMIAAYLLEPNEKKFNLDDLA- 427

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            LK    KM   +EL++                            Y   D  +T  ++K 
Sbjct: 428 -LKFLGYKMTSYQELMSFSSP--------LFGFSFADVPVEKAANYSCEDADITYRLYKI 478

Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L                E  L  +   +   G  VD      L++    +  +L +E+  
Sbjct: 479 LSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL-EDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +      +    +++   LF + G+      T+    +T   VL            +   
Sbjct: 539 IAG-EPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R +  +     ++ L + +N   GR+  +    G + TGR S      QNLP  S   +E
Sbjct: 598 R-KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLPTKSEEGKE 655

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397
                                    +R  ++       +V AD + IE R+LA ++G++ 
Sbjct: 656 -------------------------IRKAIVPQDPNWWIVSADYSQIELRILAHLSGDEN 690

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAFE G D++  T +R FNV P +VT++ R  GK++  ++ Y            +  L
Sbjct: 691 LLKAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTP-----YGLSVRL 745

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +          +    +    ++ + +     E        G   +  +   R ++   
Sbjct: 746 GVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN--- 802

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                E  +    T   G A    K   + +                 R L  R + +  
Sbjct: 803 --TQAEGERIAINTPIQGTAADIIKLAMIEID----------------RELKERKMRSK- 843

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                                  I+Q                    +V  V DE      
Sbjct: 844 ----------------------MIIQ-------------VHDE---LVFEVPDE------ 859

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +    ++   MT+       +PL+ +    K +
Sbjct: 860 -EKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892


>gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
 gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414]
          Length = 879

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 99/701 (14%), Positives = 216/701 (30%), Gaps = 171/701 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM---- 53
            +  D ET              A++  ++ F+F  +++        H        +    
Sbjct: 318 IIAFDTETTGLD----------AKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQS 367

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111
            +   E + N  V  + HN  ++  +++  FNL +P   +  T++LA          +  
Sbjct: 368 AKKAIELIFNHFV--IGHNLKYDFKIIQNNFNLTLPQE-YADTMILAWLKNPSLRVNMDD 424

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +   L+L + +    + L+              + +           +Y   D  +T   
Sbjct: 425 LA--LRLFNYETLHFESLVK-------------KGENFTSVELEKACKYAAEDAYITLRF 469

Query: 172 FKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +                  E +   +   I + G  +D      L +  + E   L +E+
Sbjct: 470 YLYFLKNLETPLLELAKTCEFDFIKIIMMIEENGIKLDTNALEILMKKFENEIKNLSEEI 529

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
             L      +    +++   LF +  L      +   +T ++VL++     P   ++ + 
Sbjct: 530 YILCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDY 588

Query: 280 RMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           R   ++        L++    + + R+  +    G + TGR S      QN+P       
Sbjct: 589 R-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHG---- 642

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                  +   +SC +A EG   +  D + IE R+LA  + ++ 
Sbjct: 643 ---------------------QYAKNYKSCFVAKEGFSFISLDYSQIELRMLAHFSEDEK 681

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF   ED++V T    F     +   + R++ K +   L                G+
Sbjct: 682 LLNAFANDEDIHVRTAMMIFG----ESNYETRSVAKSINFGL--------------IYGM 723

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
              T +  +K  ++                                +   + + +  + +
Sbjct: 724 GYKTLSQNLKIEASL------------------------------AKSYIEKYFENFTSI 753

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            + + ++    +Q                          N  +   SGR   +       
Sbjct: 754 KKYFEKIKNEAKQ--------------------------NGFITTLSGRKRYFDFENAKP 787

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVC 634
                          Y  +   +I+Q  + D++   M+   K       ++L +HDE++ 
Sbjct: 788 MQ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIF 837

Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E  D    N       +M +       + LK     +K + 
Sbjct: 838 EVKDKLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876


>gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
 gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031]
          Length = 944

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 104/695 (14%), Positives = 204/695 (29%), Gaps = 152/695 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----DPVMPQVLKE 59
           + +D ET S              +  +   +   +          +         ++L+ 
Sbjct: 373 IAVDTETTSLN----------TFEAELAGISISTEARKARFIALANSSLNPQSALELLRP 422

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117
            LEN ++     N  ++  VLK    +D+       T++ +          L  +     
Sbjct: 423 LLENPELPKTGQNLKYDILVLKKY-GIDLTPVG-FDTMLASYVLDPEEKHNLDDLAARH- 479

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               K    +EL                             +Y   D  +  ++ +    
Sbjct: 480 -LGYKTTTFEEL----------TGTGKAKLHIFDVEPEQLSDYACQDADLALQLEEIFRK 528

Query: 178 LSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELESLT 226
               E+EL +L + I              G C+D       ++ V  E   L +++ + +
Sbjct: 529 KLEGEKELLWLCEHIEFPLVSVLAAMEHAGICIDTPHLEKTSEAVGKELELLTEKIYAAS 588

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                +    ++L   LF   GL  +  T+   +T   VL    +L P    +   R   
Sbjct: 589 GAP-FNIDSPKQLSNILFNVLGLPTKKSTKTGFSTNVEVLEELAELHPVVASLLEYR-TL 646

Query: 284 SRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            +     ++ L + +N   GRL  +      + TGR S      QN+P  S   +E    
Sbjct: 647 QKLKTTYIDALPKIVNPLTGRLHTSFNQFI-TATGRLSSSNPNLQNIPIRSPLGKE---- 701

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                +R   I  S  K L+ AD + IE R+ A ++G+   ++A
Sbjct: 702 ---------------------IRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEA 740

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F   ED++  T    F     ++T D R   K +   + Y            +  LN+  
Sbjct: 741 FRNREDIHTATARVIFG--SDEITPDMRRKAKEVNFGVLYG-----IMPFGLSKRLNIPR 793

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              +   ++   ++       + + E   +       +G    R       ++S +    
Sbjct: 794 SEAIAIIDTYKAKYPGLFLALQEIIETGKKDGYVSTLLGR--RRYIADLNSRNSNI---Q 848

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +A   T   G A    K                 + L S R        + RS + 
Sbjct: 849 KAAERAAMNTPIQGTAADIIKC---------------AMNLCSERLRK----NSMRSVM- 888

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
                                           ++                ++ ET D ++
Sbjct: 889 --------------------------------LLQVHDE-----------LLFETTDEEK 905

Query: 642 F-NASMLYHLMTSNPSWA--KGLPLKAEGYESKRY 673
              A ++   M         K +P++ +    K +
Sbjct: 906 EPLADLIEEAMIDAAIICGLKNVPVEVDTGIGKNW 940


>gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994]
 gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994]
          Length = 909

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 102/708 (14%), Positives = 198/708 (27%), Gaps = 179/708 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET                   ++ F+F  D         +H              
Sbjct: 341 IAFDTETTGLDPSKDH----------LVGFSFSTDGKTGYYVPMMHSYLGVGDQVSTEAA 390

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KA 111
            + ++   E     ++ HN  F+   +     +D  +  +  T+VLA       +L    
Sbjct: 391 AKAIRLIFE---HRVIGHNIKFDLHFVTRFLGVD-RLSIYADTMVLAWLTDSSRSLAMDN 446

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + ++L           E+I              + +     A     +Y   D  +T  +
Sbjct: 447 LSQSLLH--------HEMIHFKD-------TVKKGENFASVAIEDACKYAGEDAYITYRL 491

Query: 172 FKRLEPLS-------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ L+                  E         +   G  VD A+     + V  E   L
Sbjct: 492 YEVLKEQLLLKGGQEALDEAFDVEFPFTLTLLGMEKEGIAVDTAVLELFKKEVAHEIATL 551

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275
            +++ S     V +    ++L   LF   GL     T+   +T ++VL   +   P    
Sbjct: 552 TEQIHSACGT-VFNLNSPKQLGVILFETLGLPHGKKTKTGYSTDEQVLEGLQFEHPMIPM 610

Query: 276 VFNNRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           +   R    +     +  L+     +   R+  +    G + TGR S      QN+P  +
Sbjct: 611 LLQYR-EYHKLYSTYIEPLIALAQNDPSSRIYTSFVQTG-TATGRLSSKNPNLQNIPVKT 668

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                     +   +R   +A  GKKL+  D + IE R+LA  +
Sbjct: 669 A-------------------------LGMRIREAFVAPRGKKLIGIDYSQIELRLLAHFS 703

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF  G D+++ T    F     +    +R I K +   L Y            
Sbjct: 704 EDTVLVNAFNEGHDIHMQTAIALFGA---EDASRKRNIAKTVNFGLLYGM---------- 750

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                                                + +          + + + + + 
Sbjct: 751 ----------------------------------GQKKLSDTLGITTKEAKEIIERYFET 776

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              V   +N + +  ++        +  +RR                         Y D 
Sbjct: 777 FPSVKGYFNGIVEQAKEI--GYVETLLHRRR-------------------------YFDF 809

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLT 627
           G+    L            Y  +    + Q  + D++   M               ++L 
Sbjct: 810 GSATPMLK---------AAYERESVNTVFQGSASDLIKLSMNKIDTMIRTEGLRARMLLQ 860

Query: 628 VHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +HDE++ E      E  A      M         +PLK   +    + 
Sbjct: 861 IHDELIFEVDADVAEEYAVRFVDAMERILE--LRVPLKTSMHIGNHWG 906


>gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580]
 gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580]
          Length = 879

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 91/675 (13%), Positives = 195/675 (28%), Gaps = 129/675 (19%)

Query: 12  SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIV 69
           SP  L    +     +  ++ F+   ++H         +    Q    KE  E+      
Sbjct: 317 SPASLVVEQLGDNYHEAPILGFSI-VNEHGAFFIP---EETAVQSDCFKEWAEDESKKKW 372

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
             ++      L     +++        L+ A       +   V    K    ++      
Sbjct: 373 VFDAKRAAVAL-RWRGIELKGAE-FDVLLAAYIINPGHSYDDVASVAK--EHQLHIVSAD 428

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
            A + KG       ++   +H           +  +    E  ++LE   + E  L ++ 
Sbjct: 429 EAVYGKGAKQAVPDEKELADHLARKAKAISLLREKLLDELEENEQLELFEALEMPLAHIL 488

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  VDV     + + +  +  + ++++   + G   +    ++L   LF + GL
Sbjct: 489 GEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHE-SAGETFNINSPKQLGVILFDKLGL 547

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL   +        + + R    +     +  L++ +  D     
Sbjct: 548 PVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYRQ-IGKLQSTYVEGLLKVIKKDSHKVH 606

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T      ++TGR S      QN+P       +                         +R 
Sbjct: 607 TRFNQALTQTGRLSSTDPNLQNIPIRLEEGRK-------------------------IRQ 641

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             + S +G  +  AD + IE RVLA ++ ++  ++AF    D++  T    F+V+  +VT
Sbjct: 642 AFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEEEVT 701

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R   K +                    G++    +                      
Sbjct: 702 PAMRRQAKAVNF--------------GIVYGISDYGLSQ--------------------- 726

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                 + +      V E      +  ++  + G          
Sbjct: 727 ---------NLGITRKEAAAFIERYFHSFQGVKEYM---EETVQEAKQRGYVTTLLS--- 771

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                               R     ++ +             R            +Q  
Sbjct: 772 --------------------RRRYIPELTSRNF---NLRSFAERTAMNTP------IQGS 802

Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+ + M++             ++L VHDE++ E P+ +      L   +M       
Sbjct: 803 AADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEHALE-- 860

Query: 659 KGLPLKAEGYESKRY 673
             +PLK +      +
Sbjct: 861 LDVPLKVDCASGPSW 875


>gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
 gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2]
          Length = 879

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 91/675 (13%), Positives = 195/675 (28%), Gaps = 129/675 (19%)

Query: 12  SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIV 69
           SP  L    +     +  ++ F+   ++H         +    Q    KE  E+      
Sbjct: 317 SPASLVVEQLGDNYHEAPILGFSI-VNEHGAFFIP---EETAVQSDCFKEWAEDESKKKW 372

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
             ++      L     +++        L+ A       +   V    K    ++      
Sbjct: 373 VFDAKRAAVAL-RWRGIELKGAE-FDVLLAAYIINPGHSYDDVASVAK--EHQLHIVSAD 428

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
            A + KG       ++   +H           +  +    E  ++LE   + E  L ++ 
Sbjct: 429 EAVYGKGAKQAVPDEKELADHLARKAKAISLLREKLLDELEENEQLELFEALEMPLAHIL 488

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  VDV     + + +  +  + ++++   + G   +    ++L   LF + GL
Sbjct: 489 GEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHE-SAGETFNINSPKQLGVILFEKLGL 547

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL   +        + + R    +     +  L++ +  D     
Sbjct: 548 PVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYRQ-IGKLQSTYVEGLLKVIKKDSHKVH 606

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T      ++TGR S      QN+P       +                         +R 
Sbjct: 607 TRFNQALTQTGRLSSTDPNLQNIPIRLEEGRK-------------------------IRQ 641

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             + S +G  +  AD + IE RVLA ++ ++  ++AF    D++  T    F+V+  +VT
Sbjct: 642 AFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEEEVT 701

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R   K +                    G++    +                      
Sbjct: 702 PAMRRQAKAVNF--------------GIVYGISDYGLSQ--------------------- 726

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                 + +      V E      +  ++  + G          
Sbjct: 727 ---------NLGITRKEAAAFIERYFHSFQGVKEYM---EETVQEAKQRGYVTTLLS--- 771

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                               R     ++ +             R            +Q  
Sbjct: 772 --------------------RRRYIPELTSRNF---NLRSFAERTAMNTP------IQGS 802

Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+ + M++             ++L VHDE++ E P+ +      L   +M       
Sbjct: 803 AADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEHALE-- 860

Query: 659 KGLPLKAEGYESKRY 673
             +PLK +      +
Sbjct: 861 LDVPLKVDCASGPSW 875


>gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003]
 gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003]
          Length = 913

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 113/699 (16%), Positives = 201/699 (28%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +T            ++  +F  +          H             + 
Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLPREEVL 388

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+     V  +  ++  VL     +++       TL+ +              
Sbjct: 389 AKLKPWLESAQQKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVLESHRPHDMDNL 446

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A     EY   D  +T  + + 
Sbjct: 447 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVALEKAAEYAAEDADITLRLHQT 496

Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           + P  + E+               + + +   G  +D       +  +     +L+ +  
Sbjct: 497 MYPQLAAEKTLENVYRDIEVPTSRVLRKMERTGVLIDAEKLRQQSNEIATRLIELESKAY 556

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T +    T + VL    +  P    +  +
Sbjct: 557 ELAGG-EFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEH 615

Query: 280 RMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N S GR+        A  TGR +      QN+P  +     
Sbjct: 616 R-GLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTGEGRR 673

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA  G KLV AD + IE R++A ++G++  
Sbjct: 674 -------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESL 708

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F+V P +V+ DQR + KV+   L Y             + L 
Sbjct: 709 LRAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMS-----SFGLASNLG 763

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +   A  +  +     +     +    + +       +   G          R     ++
Sbjct: 764 ITRDAAKLYIDRYFARYPGVARYMDETRLSAKAKGYVETVFGR---------RLWLPEIN 814

Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    K   + +    ++ N                  
Sbjct: 815 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQKWIEESNIG---------------- 858

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                  T  I+Q                    ++L V DE   
Sbjct: 859 -----------------------TRMIMQ-------------VHDE---LILEVPDE--- 876

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E P+        L  LM      A  +PL AE      +
Sbjct: 877 ELPE----VRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909


>gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1]
 gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1]
          Length = 903

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 114/687 (16%), Positives = 211/687 (30%), Gaps = 135/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQV----L 57
            ET   + L   G  + A D  +   A    +                  +        L
Sbjct: 329 TET-KELALAVSGTSEEAIDARLTALAISPAEGEAYFISAEFIGSASDGQMFVSEGHPGL 387

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              L N ++T  AHN+ +   +L +    +I       T++ A   G     K +G    
Sbjct: 388 IALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLD-FDTMLSAHLLGE----KNLGIKDL 441

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +      E  ++     +    +           +    +    KG           ++ 
Sbjct: 442 VFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETNLIDL 501

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
             + E  L  +   +   G  +D  L   + + V  +  KL++ + +       +    +
Sbjct: 502 FVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHS-FNIGSPQ 560

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF E  L +   T+   +T   VL   K        +   R    +     L+TL
Sbjct: 561 QLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYR-MLVKLKSTYLDTL 619

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
              +N   R   T      + TGR S      QN+P       E                
Sbjct: 620 PRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGRE---------------- 663

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   IA +G  ++  D + I+ RVLA ++G+   ++AF   +D++  T A
Sbjct: 664 ---------IRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAA 714

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           R  N+ P++VTK+QR + K +   +                G++        +       
Sbjct: 715 RLLNILPSEVTKEQRRLAKTVNFGVI--------------YGMSSYGLEQATE------- 753

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                        ++  KA+ +K+ RV+  + E+          
Sbjct: 754 -----------------------LSLAEADKFIKAYFEKYPRVAIYFAEIKHQART---- 786

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                 N  +    GR     ++ +             R     
Sbjct: 787 ----------------------NGYVETLLGRRRYIPEINSPN---RILRESAERMAINM 821

Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SML 647
                  VQ  S DI+   M+         K    ++L VHDE++ E PD +     ++L
Sbjct: 822 P------VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAELKRMSALL 875

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYR 674
              M+   ++   +PLK E      + 
Sbjct: 876 METMSGAVTF--EIPLKVELKSGANWG 900


>gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221]
 gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221]
 gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3]
          Length = 879

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 95/702 (13%), Positives = 218/702 (31%), Gaps = 173/702 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET               ++  ++ F+F  +++        H        +  Q 
Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQS 367

Query: 57  LKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALK 110
            K+A+E   V      + HN  ++  +++  F+L++P  ++  T++LA          + 
Sbjct: 368 AKKAIE---VIFNHFVIGHNLKYDFKIIQNNFDLNLP-QKYADTMILAWLKNPSLRVNMD 423

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +   L+L + +    + L+              + +           +Y   D  +T  
Sbjct: 424 DLA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLR 468

Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            +                  E +   +   + + G  +D      L +  + E   L +E
Sbjct: 469 FYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEE 528

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           + +L      +    +++   LF +  L      +   +T ++VL++     P   ++ +
Sbjct: 529 IYTLCEDR-FNLNSPKQVGDILFEKLKLPSRKKGKTGYSTDEKVLNALLDKHPAITKILD 587

Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            R   ++        L++    + + R+  +    G + TGR S      QN+P   +  
Sbjct: 588 YR-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYA 645

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           ++                          +SC +A +G   +  D + IE R+LA  + ++
Sbjct: 646 KDY-------------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDE 680

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF   ED++  T    F     +   + R++ K +                    G
Sbjct: 681 KLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFG--------------LIYG 722

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +   T +  +K  +                                 +   + + +  + 
Sbjct: 723 MGYKTLSQNLKIEAHL------------------------------AKSYIEKYFENFTS 752

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           + + +  +    +Q                          N  +   SGR   +      
Sbjct: 753 IKKYFETVKNEAKQ--------------------------NGFITTLSGRKRYFDFENAK 786

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIV 633
                           Y  +   +I+Q  + D++   M+   K       ++L +HDE++
Sbjct: 787 PMQ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELI 836

Query: 634 CETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            E  D    N       +M +       + LK     +K + 
Sbjct: 837 FEVKDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876


>gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 879

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 95/702 (13%), Positives = 217/702 (30%), Gaps = 173/702 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET               ++  ++ F+F  +++        H        +  Q 
Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQS 367

Query: 57  LKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALK 110
            K+A+E   V      + HN  ++  +++  F L++P  ++  T++LA      S   + 
Sbjct: 368 AKKAIE---VIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSSRVNMD 423

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +   L+L + +    + L+              + +           +Y   D  +T  
Sbjct: 424 DLA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLR 468

Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            +                  E +   +   + + G  ++      L +  + E   L +E
Sbjct: 469 FYLDFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLNTNALEILMKKFENEIKNLSEE 528

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           + +L      +    +++   LF +  L      +   +T ++VL+      P   ++ +
Sbjct: 529 IYTLCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVITKILD 587

Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            R   ++        L++    + + R+  +    G + TGR S      QN+P   +  
Sbjct: 588 YR-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYA 645

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           ++                          +SC +A +G   +  D + IE R+LA  + ++
Sbjct: 646 KDY-------------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDE 680

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF   ED++  T    F     +   + R++ K +                    G
Sbjct: 681 KLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFG--------------LIYG 722

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +   T +  +K  +                                 +   + + +  + 
Sbjct: 723 MGYKTLSQNLKIEAHL------------------------------AKSYIEKYFENFTS 752

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           + + +  +    +Q                          N  +   SGR   +      
Sbjct: 753 IKKYFETVKNEAKQ--------------------------NGFITTLSGRKRYFDFENAK 786

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIV 633
                           Y  +   +I+Q  + D++   M+   K       ++L +HDE++
Sbjct: 787 PMQ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELI 836

Query: 634 CETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            E  D    N       +M +       + LK     +K + 
Sbjct: 837 FEVKDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876


>gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13]
 gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13]
          Length = 925

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 98/691 (14%), Positives = 185/691 (26%), Gaps = 146/691 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60
             D ET     L             ++  +F   ++         +      + +    A
Sbjct: 355 AFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFSPA 404

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L+N     +  N  F+  VL+   N+ +       T++            +  + E    
Sbjct: 405 LQNPKSLKIGQNIKFDILVLRKY-NVKVA-GPLFDTMIAHYLLNPELRHGMDYLAETY-- 460

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              +    +ELI                            EY   D  VT ++     P 
Sbjct: 461 LKYQTVHIEELIG---------PKGKNQLSMRNVPVEQIAEYAAEDADVTLKLKNYFAPE 511

Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L Y+   +   G  +D       +  +     KL+QE+  L   
Sbjct: 512 LKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELAG- 570

Query: 229 LVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +    +++   LF    L  +   T+    +T + VL   +   P   ++   R   
Sbjct: 571 AEFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLEYR-GL 629

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     ++ L E +N       T      + TGR S      QN+P       E     
Sbjct: 630 KKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGRE----- 684

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   I          AD + IE R++A ++G+   ++AF
Sbjct: 685 --------------------IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAF 724

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           ++G D++  T A+ + +   +VT D R   K     + Y               L +   
Sbjct: 725 QSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERLGIPRS 779

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 +     +   + +     +   E    +       +R        ++ V     
Sbjct: 780 ESKELIDGYFSTYPRIKEYMEESVKVAKEKGYVETIFKR--KRFLPDINSHNAVVRGY-- 835

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +        G A    K   V +    +++      L S   L   D  N   Y   
Sbjct: 836 -AERNAINAPIQGSAADIIKLAMVRIYERFEEEG-----LKSKMILQVHDELNFNVYKEE 889

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
                                    +++             IVL                
Sbjct: 890 ------------------------AEVVK-----------KIVL---------------- 898

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   M +       +PL A+  E + +
Sbjct: 899 ------EEMENVMK--LQVPLIADCGEGENW 921


>gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
 gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1]
          Length = 903

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 115/687 (16%), Positives = 212/687 (30%), Gaps = 135/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQV----L 57
            ET   + L   G  + A D  +   A    +                  +        L
Sbjct: 329 TET-KELALAVSGTSEEAIDARLTALAISPAEGEAYFISAEFIGSASDGQMFVSEGHPGL 387

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              L N ++T  AHN+ +   +L +    +I       T++ A   G     K +G    
Sbjct: 388 IALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLD-FDTMLSAHLLGE----KNLGIKDL 441

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +      E  ++     +    +           +    +    KG         K ++ 
Sbjct: 442 VFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETKLIDL 501

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
             + E  L  +   +   G  +D  L   + + V  +  KL++ + +       +    +
Sbjct: 502 FVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHS-FNIGSPQ 560

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF E  L +   T+   +T   VL   K        +   R    +     L+TL
Sbjct: 561 QLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYR-MLVKLKSTYLDTL 619

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
              +N   R   T      + TGR S      QN+P       E                
Sbjct: 620 PRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGRE---------------- 663

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   IA +G  ++  D + I+ RVLA ++G+   ++AF   +D++  T A
Sbjct: 664 ---------IRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAA 714

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           R  N+ P++VTK+QR + K +   +                G++        +       
Sbjct: 715 RLLNILPSEVTKEQRRLAKTVNFGVI--------------YGMSSYGLEQATE------- 753

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                        ++  KA+ +K+ RV+  + E+          
Sbjct: 754 -----------------------LSLAEADKFIKAYFEKYPRVAIYFAEIKHQART---- 786

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                 N  +    GR     ++ +             R     
Sbjct: 787 ----------------------NGYVETLLGRRRYIPEINSPN---RILRESAERMAINM 821

Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SML 647
                  VQ  S DI+   M+         K    ++L VHDE++ E PD +     ++L
Sbjct: 822 P------VQGTSADIIKLAMVRLDEKLKEEKLESRLLLQVHDELIFEVPDAELKRMSALL 875

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYR 674
              M+   ++   +PLK E      + 
Sbjct: 876 METMSGAVTF--EIPLKVELKSGANWG 900


>gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38]
 gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38]
          Length = 950

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 203/694 (29%), Gaps = 149/694 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           +  D ET     L          +  ++  +F F+           D      + +  + 
Sbjct: 378 VCFDTETTGIDAL----------NAELVGMSFSFEKGKGFYVPFPEDQEEAQTLIEKFRP 427

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117
             EN ++  +  N  ++  +L    N+ +   +   T++            +  + E   
Sbjct: 428 FFENENIEKIGQNMKYDLKILSNY-NMQVK-GKLFDTMIAHYLINPDMRHNMDVLSETY- 484

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 +  + LI +                          EY   D  +T ++ +  +P
Sbjct: 485 -LKYAPKSIETLIGK---------KGKNQLSMRDVPLEDIKEYATEDADITFQLKEHFQP 534

Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           +             E  L  +   +   G  +DV     ++  +  E    +Q++   T 
Sbjct: 535 ILEKVGTKKLFDEIEIPLVPVLADMEKEGIRLDVEFLKNMSVDMQKEIDAFEQQIYE-TA 593

Query: 228 GLVSSSRCLEKLKTWLFLETGL------HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           G   +    ++L   LF +  +        +     T + VLS           +     
Sbjct: 594 GEKFNLASPKQLGDILFDKLKIGGAKQKKTKTGQYATGEEVLSYLANEHQIVRDIL-EWR 652

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           +  +     ++ L   ++       T      + TGR S      QN+P  +        
Sbjct: 653 QMVKLQSTYIDALPNQVDKKTGRVHTDYMQTVAATGRLSSTNPNLQNIPIRTEKGR---- 708

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +R   IA  E   L+ AD + IE R++A + GE+  +K
Sbjct: 709 ---------------------LIRKAFIARDENYTLLSADYSQIELRIIAALCGEENMIK 747

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+  ED++ +T A+ FN+   +VTK+QR+  K +   + Y   A        +   NL+
Sbjct: 748 AFQNHEDIHKSTAAKVFNIPLDEVTKEQRSHAKTVNFGIIYGVSA-----FGLSNQTNLS 802

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                    +  + +   ++F     +   E+   +   G    R  K     ++ V   
Sbjct: 803 RKESAELIEAYYQTYPKLKSFMTSQVDFARENGYVETISGR--RRYLKDINSANAIVRG- 859

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +        G A    K   +                         ++    +  
Sbjct: 860 --GAERNAVNAPIQGSAADIIKIAMI-------------------------NIHKKLTSE 892

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           N  ++                            ++                +V +  +++
Sbjct: 893 NWKSKM---------------------------LLQVHDE-----------LVFDVHNSE 914

Query: 641 EFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 M+ H M +    A  +PL  E    K +
Sbjct: 915 LEKIQPMIKHEMENAFKMA--VPLDVEIGLGKNW 946


>gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii]
 gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii]
          Length = 881

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 107/665 (16%), Positives = 199/665 (29%), Gaps = 135/665 (20%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             +   A G  D              PQ L E L +        +       L     +D
Sbjct: 330 ADIRGCALGRFDGSAAFVQGEARDW-PQPLVECLRDGSKLKAVQDLKPLLLALHRQ-GID 387

Query: 88  IPIHRWICTLVLARSNGLPSALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           +P   +  T+V             +   A+ L S ++  G+         E         
Sbjct: 388 MP-GPYFDTMVADYLLNPNRRAHTLEAIAMDLLSYQLGAGER--------EDTSKGPQSL 438

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVD 200
                   R  GE       V   + +RL+           E  L  +   I   G+ +D
Sbjct: 439 FDVDEALVRRTGEAAAVTAKVAPMLRERLKEQGSLSLFQDVEMPLVPVLAEIERNGFLLD 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
           VA    L++ ++ E  ++   +  L  G   +    ++L T LF   GL     T+   +
Sbjct: 499 VAGLQALSKELEHELEQMVGSIYRL-GGGEFNIGSPKQLATVLFETLGLKPLRKTKTGYS 557

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T +  L+          Q+ N R   ++     ++ L + +N + +   T      + TG
Sbjct: 558 TDEDTLTQLASQHELPAQILNYR-TLTKLKSTYVDALPQLVNPETKRLHTSLNQTVAATG 616

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P                                 +R   IA  G +L+
Sbjct: 617 RLSSTDPNLQNIPVKGDYGLR-------------------------IREAFIAPPGHQLL 651

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + +E R+LA ++ +   L+ FE GED+++ T    FN+   +VT+D R   K +  
Sbjct: 652 CADYSQVEPRILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSVVF 711

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y             + + +                                      
Sbjct: 712 GIVYGISP-----FGLASNIGVPQA----------------------------------- 731

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 ++  + + +K + V  L     +  +     G                      
Sbjct: 732 ----DAKKYIETFFEKFAAVRALM---DRNIDDGKTKGYTTTIL---------------- 768

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR     ++               R          + +Q  + D++   M+  
Sbjct: 769 -------GRRRPIPELQGGDPSQRGV---GERMA------VNSPIQGSAADLIKVAMIKV 812

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT-SNPSWAKGLPLKAEGYE 669
            +          ++L VHDE++ E P+ +   A  L    M  +  +    +PLK +   
Sbjct: 813 HQRLQNELPRCKMILQVHDELIFEVPEQELEQAKQLVKAEMEATGAALGLSVPLKVDLGV 872

Query: 670 SKRYR 674
              +R
Sbjct: 873 GLNWR 877


>gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 879

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 94/702 (13%), Positives = 216/702 (30%), Gaps = 173/702 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET               ++  ++ F+F   ++        H        +  Q 
Sbjct: 318 IIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQS 367

Query: 57  LKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALK 110
            K+A+E   V      + HN  ++  +++  F L++P  ++  T++LA          + 
Sbjct: 368 AKKAIE---VIFNHFVIGHNLKYDFKIIQNNFGLNLP-QKYADTMILAWLKNPSLRVNMD 423

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +   L+L + +    + L+              + +           +Y   D  ++  
Sbjct: 424 DLA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYISLR 468

Query: 171 IFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            +                  E +   +   + + G  +D      L +  + E   L +E
Sbjct: 469 FYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEE 528

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           + +L      +    +++   LF +  L      +   +T ++VL++     P   ++ +
Sbjct: 529 IYTLCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILD 587

Query: 279 NRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
            R   ++        L++    + + R+  +    G + TGR S      QN+P   +  
Sbjct: 588 YR-ELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYA 645

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           ++                          +SC +A +G   +  D + IE R+LA  + ++
Sbjct: 646 KDY-------------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDE 680

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF   ED++  T    F     +   + R++ K +                    G
Sbjct: 681 KLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFG--------------LIYG 722

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +   T +  +K  +                                 +   + + +  + 
Sbjct: 723 MGYKTLSQNLKIEAHL------------------------------AKSYIEKYFENFTS 752

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           + + +  +    +Q                          N  +   SGR   +      
Sbjct: 753 IKKYFETVKNKAKQ--------------------------NGFITTLSGRKRYFDFENAK 786

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIV 633
                           Y  +   +I+Q  + D++   M+   K       ++L +HDE++
Sbjct: 787 PMQ----------IAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELI 836

Query: 634 CETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            E  D    N       +M +       + LK     +K + 
Sbjct: 837 FEVKDDLCENFVKKTRDIMENIVK--LKVKLKTSSSIAKNWG 876


>gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50]
 gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50]
          Length = 904

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 107/702 (15%), Positives = 192/702 (27%), Gaps = 164/702 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + +D ET S  ++             ++  +              H             +
Sbjct: 331 VALDTETTSLDEM----------QARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEV 380

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111
              L+  LE+     + H++ ++  V      + +       T++ A          L  
Sbjct: 381 IARLRGWLEDAGRAKLLHHAKYDTHVFAN-EGVSLAGVA-EDTMLQAYVLESHRGVGLND 438

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L       E       +       A  L G Y   D   T ++
Sbjct: 439 LAQRF------------LGRSGVNYEDLCGKGAKQIGFDEVAVALAGHYSCEDSDFTLQL 486

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L P  +++           ++  +   +   G  VD       +  +  E   L+Q 
Sbjct: 487 HEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQR 546

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
              L      +    ++L   LF   GL +   T     +T + VLS   +  P    + 
Sbjct: 547 AYELAGQP-FNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLL 605

Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             R   S+      + L   +N   GR+        A  TGR +      QN+P  + + 
Sbjct: 606 EYR-GLSKLKSTYTDKLPRMINPATGRVHTHYSQA-AVITGRLASSDPNLQNIPVRTEAG 663

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      VR   IA +G KL+ AD + IE R++A ++ + 
Sbjct: 664 RR-------------------------VREAFIAEQG-KLLSADYSQIELRIMAHVSDDA 697

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF  GED++  T +  F V  A+V  +QR   K +   L Y  G          + 
Sbjct: 698 NLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV-----FGLASN 752

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +   A     +     +     +    +    +    +   G   +            
Sbjct: 753 LGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQL---------PD 803

Query: 517 VSEL----WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +            +A       G A    K   V +                        
Sbjct: 804 IRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLD------------------- 844

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                           R  T        I+Q                    +VL      
Sbjct: 845 --------------AERLRT------RMIMQ-------------VHDE---LVL------ 862

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
             E PD +    +  L  LM    +    +PL AE      +
Sbjct: 863 --EVPDEELAAVAEALPRLMCDVAT--LRVPLVAEVGMGTNW 900


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 99/711 (13%), Positives = 199/711 (27%), Gaps = 165/711 (23%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--------PVELWDC------------ 47
            ET              A     I  A    D              D             
Sbjct: 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN 443

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
                +   LK+  EN     + HN  +++ VL       I +  +   ++++       
Sbjct: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY---GISMRGFEDIMLMSYVLDSGR 500

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           +   +              ++ ++   K          + P  + +     E+   +  V
Sbjct: 501 SSHDIA----------SIAQKWLSYTRK--EILKSRKSSIPIDKISDSQVQEHAIENSNV 548

Query: 168 TREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             +++  L P              ++ +  +   +   G  +D  L   ++  +      
Sbjct: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN-KKLTPQ 272
           L++ +  L+     +    ++L   LF +        T+     T  + L        P 
Sbjct: 609 LEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +     + S+      ++L   +N   +   T   L ++ TGR +      QN+P  
Sbjct: 668 IKNIL-EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                          +   +R   I+   KKL+ AD + IE R+LA +
Sbjct: 727 T-------------------------DLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A      + FE   D++    A  F V   +V+   R   K +  ++             
Sbjct: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII------------ 809

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              G++    A                                     +      K +  
Sbjct: 810 --YGISPFRLATQ------------------------------LRIPRSEAADYIKRYFH 837

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +   + E   +      Q                          N  +    GR + Y +
Sbjct: 838 RFPGIHEYIEKTKNFVRQ--------------------------NGYVETIFGRRIHYDE 871

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVL 626
           + + +S +        R            +Q  + DI    M++  K          ++L
Sbjct: 872 INSPKSSIRNI---NERAAINAP------IQGSAADITRRAMISVHKSLEDHKLATKMLL 922

Query: 627 TVHDEIVCETPDTDEFNASM-LYHLMTSN--PSWAKGLPLKAEGYESKRYR 674
            +HDE+V E P+ +   AS  + H M     P     +PLK     S  ++
Sbjct: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973


>gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT]
 gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT]
          Length = 903

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 114/687 (16%), Positives = 211/687 (30%), Gaps = 135/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV------HDPVMPQV----L 57
            ET   + L   G  + A D  +   A    +                  +        L
Sbjct: 329 TET-KELALAVSGTSEEAIDARLTALAISPAEGEAYFISAEFIGSASGGQMFVSEGHPGL 387

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              L N ++T  AHN+ +   +L +    +I       T++ A   G     K +G    
Sbjct: 388 IALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLD-FDTMLSAHLLGE----KNLGIKDL 441

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +      E  ++     +    +           +    +    KG           ++ 
Sbjct: 442 VFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAEINLIDL 501

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
             + E  L  +   +   G  +D  L   + + V  +  KL++ + +       +    +
Sbjct: 502 FVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHS-FNIGSPQ 560

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF E  L +   T+   +T   VL   K        +   R    +     L+TL
Sbjct: 561 QLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYR-MLVKLKSTYLDTL 619

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
              +N   R   T      + TGR S      QN+P       E                
Sbjct: 620 PRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGRE---------------- 663

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   IA +G  ++  D + I+ RVLA ++G+   ++AF   +D++  T A
Sbjct: 664 ---------IRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAA 714

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           R  N+ P++VTK+QR + K +   +                G++        +       
Sbjct: 715 RLLNILPSEVTKEQRRLAKTVNFGVI--------------YGMSSYGLEQATE------- 753

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                        ++  KA+ +K+ RV+  + E+          
Sbjct: 754 -----------------------LSLAEADKFIKAYFEKYPRVAIYFAEIKHQART---- 786

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                 N  +    GR     ++ +             R     
Sbjct: 787 ----------------------NGYVETLLGRRRYIPEINSPN---RILRESAERMAINM 821

Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SML 647
                  VQ  S DI+   M+         K    ++L VHDE++ E PD +     ++L
Sbjct: 822 P------VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAEFKRMSALL 875

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYR 674
              M+   ++   +PLK E      + 
Sbjct: 876 METMSGAVTF--EIPLKVELKSGANWG 900


>gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3]
 gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3]
          Length = 921

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 97/691 (14%), Positives = 185/691 (26%), Gaps = 146/691 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEA 60
             D ET     L             ++  +F   ++         +      + +    A
Sbjct: 351 AFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEVAKVVERFSPA 400

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           L+N     +  N  F+  VL+   N+ +       T++            +  + E    
Sbjct: 401 LQNPKSLKIGQNIKFDILVLRKY-NVKVA-GPLFDTMIAHYLLNPELRHGMDYLAETY-- 456

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              +    +ELI                            EY   D  +T ++     P 
Sbjct: 457 LKYQTVHIEELIG---------PKGKNQLSMRNVPVEQIAEYAAEDADITLKLKNYFAPE 507

Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L Y+   +   G  +D       +  +     KL+QE+  L   
Sbjct: 508 LKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEVYELAGT 567

Query: 229 LVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +    +++   LF    L  +   T+    +T + VL   +   P   ++   R   
Sbjct: 568 -EFNINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLLEYR-GL 625

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     ++ L E +N       T      + TGR S      QN+P       E     
Sbjct: 626 KKLLSTYIDALPELINPQTGKIHTSFNQAVTSTGRLSSTNPNLQNIPVRDDLGRE----- 680

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   I          AD + IE R++A ++G+   ++AF
Sbjct: 681 --------------------IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAF 720

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           ++G D++  T A+ + +   +VT D R   K     + Y               L +   
Sbjct: 721 QSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERLGIPRS 775

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 +     +   + +     +   E    +       +R        ++ V     
Sbjct: 776 ESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKR--KRFLPDINSHNAVVRGY-- 831

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +        G A    K   V +    +++      L S   L   D  N   Y   
Sbjct: 832 -AERNAINAPIQGSAADIIKLAMVRIYERFEEEG-----LKSKMILQVHDELNFNVYKEE 885

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
                                    +++             IVL                
Sbjct: 886 ------------------------AEVVK-----------KIVL---------------- 894

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   M +       +PL A+  E + +
Sbjct: 895 ------EEMENVMK--LQVPLIADCGEGENW 917


>gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
 gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032]
          Length = 894

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 105/694 (15%), Positives = 191/694 (27%), Gaps = 158/694 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------- 52
           + +D ET S   L             ++  +   +D       C H              
Sbjct: 315 VAVDTETDSLDPLK----------ARLVGVSLCTEDGEAWYLPCGHRDEAGELVAGQLPL 364

Query: 53  --MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH-RWICTLVLARSNGL---P 106
             + + L+  LE+   T + HN  F+  VL A  N  I +      T++ A         
Sbjct: 365 DRLIEFLRPVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQLACPLHDTMIGAWLLAPDRRT 424

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             L  +   + L     EE    +    K E             R        Y   DV 
Sbjct: 425 YKLDDLCGEINLRMTSYEE----VTHADKSED---------AFCRVPLEAAKNYSCEDVY 471

Query: 167 VTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
               +++   P   +             L  +   +   G  VD      L+   D    
Sbjct: 472 GALRLYQEQLPQLERADLLALLREVEGPLVPVLAAMEREGIRVDADKLARLSAEFDRRLR 531

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQA 273
             +  +         +    ++L   LF +  L     T+   +T  +VL +        
Sbjct: 532 TDELSIYQAAGMS-FNINSPKQLGEVLFEKLQLPKGRKTKTGWSTDVKVLENLSFDHELP 590

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +   R   ++     ++ L    N   GR+  +    G + TGR S      QN+P  
Sbjct: 591 ALILQYRN-LAKLKSTYVDKLASLRNPRTGRVHTSFNQCG-TATGRLSSSSPNLQNIPIR 648

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +RS  IA++G  L+ AD + I+ RVLA  
Sbjct: 649 TEEGRR-------------------------IRSAFIAADGCLLLAADYSQIDLRVLAHY 683

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  + AF+ G+D++  T A  FNV+P  VT + R + K +   + Y           
Sbjct: 684 SQDRELIAAFQGGQDIHRRTAAEIFNVSPELVTAEMRRVAKTINFGIVYGMS-----SFG 738

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            ++ L+++     +  +     +   ++F     +   +       +G            
Sbjct: 739 LSSQLHVSRKDAQLFIDRYFAHFSGIKDFMASTIQQAKKDGFVTTLLGRRRPL------- 791

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                         +  +         A                 L +     R      
Sbjct: 792 ----------AEINSANRVQREFAERTAINTPIQGTAADIIKLAMLRIHRELLRRDF--- 838

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                           R                        ++                +
Sbjct: 839 ----------------RARM---------------------LLQIHDE-----------L 850

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKA 665
           V E P+T+    S  L   M S       +PL  
Sbjct: 851 VLEVPETELDPVSRLLKDSMESAMP--LRVPLVV 882


>gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822]
 gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis]
          Length = 904

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 107/702 (15%), Positives = 192/702 (27%), Gaps = 164/702 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + +D ET S  ++             ++  +              H             +
Sbjct: 331 VALDTETTSLDEM----------QARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEV 380

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111
              L+  LE+     + H++ ++  V      + +       T++ A          L  
Sbjct: 381 IARLRGWLEDAGRAKLLHHAKYDTHVFAN-EGVSLAGVA-EDTMLQAYVLESHRGVGLND 438

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L       E       +       A  L G Y   D   T ++
Sbjct: 439 LAQRF------------LGRSGVNYEDLCGKGAKQIGFDEVAVPLAGHYSCEDSDFTLQL 486

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L P  +++           ++  +   +   G  VD       +  +  E   L+Q 
Sbjct: 487 HEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQR 546

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
              L      +    ++L   LF   GL +   T     +T + VLS   +  P    + 
Sbjct: 547 AYELAGQP-FNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLL 605

Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             R   S+      + L   +N   GR+        A  TGR +      QN+P  + + 
Sbjct: 606 EYR-GLSKLKSTYTDKLPRMINPATGRVHTHYSQA-AVITGRLASSDPNLQNIPVRTEAG 663

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      VR   IA +G KL+ AD + IE R++A ++ + 
Sbjct: 664 RR-------------------------VREAFIAEQG-KLLSADYSQIELRIMAHVSDDA 697

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF  GED++  T +  F V  A+V  +QR   K +   L Y  G          + 
Sbjct: 698 NLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV-----FGLASN 752

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +   A     +     +     +    +    +    +   G   +            
Sbjct: 753 LGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQL---------PD 803

Query: 517 VSEL----WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +            +A       G A    K   V +                        
Sbjct: 804 IRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLD------------------- 844

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                           R  T        I+Q                    +VL      
Sbjct: 845 --------------AERLRT------RMIMQ-------------VHDE---LVL------ 862

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
             E PD +    +  L  LM    +    +PL AE      +
Sbjct: 863 --EVPDEELAAVAEALPRLMCDVAT--LRVPLVAEVGMGTNW 900


>gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 882

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 94/652 (14%), Positives = 187/652 (28%), Gaps = 143/652 (21%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           +F  +              + ++LK   E+ ++    HN   E   L     + +     
Sbjct: 356 SFALEGESTAYSLDGPPDKILEILKTICEDGNIKKYCHNGK-ETIRLLHRNGITLRQLA- 413

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA-RFCKGETHECLYDRNKPNHRE 152
             T++ A      S+ + +         +    + L A    +               + 
Sbjct: 414 FDTMIAAYLLNPASSNQDL---------EDISLEHLNAVLPGEDRKLPAQAHCIMELAQL 464

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                  Y   D      +F  +E   +       +   +   G  VD      +++ + 
Sbjct: 465 LDNKLKLY-GQD-----RLFYEIEIPLAG------ILAEMEIEGVAVDKKQLEAMSEELG 512

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269
            +  KL  E+  LT     +    ++L   LF +  L +   T+   +T   VL      
Sbjct: 513 RQIEKLADEIYRLTG-REFNINSPKQLGKVLFEDLKLPVIKKTKTGYSTDADVLEELAAA 571

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                ++   R   ++      + L   +N +     T      + TGR S      QN+
Sbjct: 572 HEAVAKILEYRQ-MAKLKSTYADGLAALINPETGKLHTTFHQTVTNTGRLSSSDPNLQNI 630

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARV 388
           P    +                            +R   I       L+ AD + IE RV
Sbjct: 631 PIRLEAGR-------------------------LIRKVFIPGRPENLLLTADYSQIELRV 665

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++G+   +KAF+ GED++  T A  F V P +VT++ R   K +   + Y       
Sbjct: 666 LAHISGDPALIKAFKNGEDIHTRTAAEIFAVRPEEVTREMRTRAKAVNFGIVYG-----L 720

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   + ++         +    +   +++   +     +                 
Sbjct: 721 SDFGLARDIKVSRQEARRYIENYFARYAGVKDYIERIIREARQKGYVTTL---------- 770

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                                            +RR +P ++                  
Sbjct: 771 -------------------------------LNRRRYLPDLFSPNRTIRSF--------- 790

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GY 622
                   R+ +NT                   +Q  + DI+   M+N  +         
Sbjct: 791 ------GERTAMNTP------------------IQGSAADIIKLAMVNIHRELAEHGLKA 826

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ + P  +      L    M +       +PL  E    + +
Sbjct: 827 KMILQVHDELIFDAPAVEIDQLKDLVKRCMENA--LVLEVPLLVEIKAGRNW 876


>gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
 gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053]
          Length = 963

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 92/678 (13%), Positives = 199/678 (29%), Gaps = 148/678 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVLKEA 60
             D ET S              D  ++  +F +            D      +    +  
Sbjct: 393 CFDTETTSLD----------TTDAELVGLSFSYLAGEAFYIPVPADRQQAEEIVGYFRAV 442

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
            EN ++  +  N  ++  VLK    +++   +   T++            +  +  +   
Sbjct: 443 FENENIEKIGQNIKYDMLVLKNY-GIEVH-GKLSDTMLAHYLLEPDKRHGMDILAASY-- 498

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
            + +      LI +            +       A     +Y   D  +T ++       
Sbjct: 499 LNYEPVSITSLIGK---------KGGKQGNMRDVAIPEITQYAGEDADITFQLHSIFSRE 549

Query: 179 S----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L  +  ++ + G  +D+     ++ +++ +  + + E+      
Sbjct: 550 LPKVNAAKLFNEVEMPLTKVLASMENTGVRLDINALKEMSAVLESDLRQTESEIYEAAGQ 609

Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +    ++L   LF +  L      T+T    T + +LS  +     A ++ + R   
Sbjct: 610 S-FNISSPKQLGEVLFEKMKLIEKPKKTKTGQYATGEEILSDLEANHLIARKILDYR-EL 667

Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            +     ++ L   ++S  GR+  +     A+ TGR S      QN+P  +    E    
Sbjct: 668 QKLKSTYVDALPTMVSSRTGRIHTSYNQAVAA-TGRLSSTNPNLQNIPIRTPRGRE---- 722

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                +R   +      +++ AD + IE R++A  +G+    +A
Sbjct: 723 ---------------------IRKAFVPDSADFQILSADYSQIELRIMAAFSGDASMTEA 761

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G D++ TT ++ F V   +VT D R   K++   + Y   A           L +  
Sbjct: 762 FNQGRDIHATTASKVFQVPLEEVTSDMRRKSKMVNFGIIYGISA-----FGLAQRLGIPR 816

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                   +  EE+   + +   +  +  E    +                         
Sbjct: 817 GEASEIIRAYFEEFPAVKGYMDKVVNDAREREYVETI----------------------- 853

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                               +RR +P +  +   N       +        +        
Sbjct: 854 ------------------LGRRRYLPDINSRNQTNRGYAERNA--------INAPIQGSA 887

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
               ++     +     E          L   M+          L VHDE+V +   ++ 
Sbjct: 888 ADMIKVAMINIHDFMAKEK---------LKSRMI----------LQVHDELVFDAHYSEI 928

Query: 642 FNASM-LYHLMTSNPSWA 658
                 +  LM +    A
Sbjct: 929 DLLKERVDELMRNAIPMA 946


>gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42]
 gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42]
          Length = 879

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 87/666 (13%), Positives = 189/666 (28%), Gaps = 132/666 (19%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERTV 79
             Y E+  ++ F+   ++  +         +    +  K   E+  +     +S   R+V
Sbjct: 328 DNYHEEP-ILGFSI-VNETGLYYIP---KEIAIQSETFKSWAEDESMKKWVFDSK--RSV 380

Query: 80  LK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +      +++        L+ A      ++   V    K     +    +  A + KG  
Sbjct: 381 VALRWQGIELKGTE-FDALLAAYIINPGNSYDDVASVAK--EYGLNIVSKDEAVYGKGAK 437

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
                ++   +H           +  +    E   +LE     E  L  +   +   G  
Sbjct: 438 RAVPAEKELADHLARKASAVNSLRDKLLHALEENNQLELYEDLELPLALILGEMESMGVK 497

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           VDV     + + +  +  + ++++  +      +    ++L   LF + GL     T+  
Sbjct: 498 VDVERLKRMGEELKAKLKEYEEKIHDIAG-EPFNINSPKQLGVILFEKLGLPPVKKTKTG 556

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL            +   R    +     +  L++    D     T      ++
Sbjct: 557 YSTSADVLEKLADKHDIVAHILQYRQ-IGKLQSTYIEGLLKVTRKDSHKVHTRFNQALTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGK 374
           TGR S      QN+P       +                         +R   +      
Sbjct: 616 TGRLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPDW 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            +  AD + IE RVLA ++ ++  ++AF    D++  T    F+V+  +VT+  R   K 
Sbjct: 651 LIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRRQAKA 710

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +                    G++    +                               
Sbjct: 711 VNF--------------GIVYGISDYGLSQ------------------------------ 726

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                          + +    V        ++ ++  + G      +            
Sbjct: 727 NLGITRKEAGAFIDRYLESFPGVKAYM---EESVQEAKQKGYVTTLMQ------------ 771

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                      R     ++ +             R            +Q  + DI+ + M
Sbjct: 772 -----------RRRYIPELTSRNF---NLRSFAERTAMNTP------IQGSAADIIKKAM 811

Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
           ++             ++L VHDE++ E P  +      L   +M      A  +PLKA+ 
Sbjct: 812 IDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKADY 869

Query: 668 YESKRY 673
                +
Sbjct: 870 ASGPSW 875


>gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
 gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20]
          Length = 879

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 98/701 (13%), Positives = 213/701 (30%), Gaps = 171/701 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET S             ++  ++ F+F   ++        H        +  Q 
Sbjct: 318 IIAFDTETTS----------IDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQS 367

Query: 57  LKEALENTDVTI---VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111
            K+A+E   +     + HN  ++  +++  F L +P  ++  T++LA          +  
Sbjct: 368 AKKAIE--LIFKHFIIGHNLKYDFKIIENNFKLSLP-QKYADTMILAWLKNPSLRVNMDD 424

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +   L+L + +    + L+              + +           +Y   D  +T   
Sbjct: 425 LA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRF 469

Query: 172 FKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +                    +   +   + + G  +D      L +  + E   L +E+
Sbjct: 470 YLYFLKNLEPHLLDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEI 529

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
            +L      +    +++   LF +  L      +   +T ++VL+      P   ++ + 
Sbjct: 530 YALCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDY 588

Query: 280 RMRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           R   ++        L++    D   R+  +    G + TGR S      QN+P   +  +
Sbjct: 589 R-ELAKLYSTYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAK 646

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +                          +SC IA EG   +  D + IE R+LA  + ++ 
Sbjct: 647 DY-------------------------KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEK 681

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF+  ED++  T    F     +   + R+I K +   L Y  G             
Sbjct: 682 LLNAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMG------------- 724

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                          +   +          +   + + +  + +
Sbjct: 725 -------------------------------YKTLSKNLKIEANLAKTYIEKYFENFTSI 753

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
              + ++    +                           N  +   SGR   +       
Sbjct: 754 KSYFEKVKNEAK--------------------------ANGFISTLSGRKRYFDFENAKP 787

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVC 634
             +            Y  +   +I+Q  + DI+   M+   K       ++L +HDE++ 
Sbjct: 788 MQV----------AMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIF 837

Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E  D    N       +M +       + LK     +K++ 
Sbjct: 838 EVKDELCENFVKKTSDIMENIVK--LKVKLKTSSSIAKKWG 876


>gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
 gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911]
          Length = 877

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 83/663 (12%), Positives = 197/663 (29%), Gaps = 137/663 (20%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACF 84
             +  F+    +  V         +  +  K+  E+     +     ++     V     
Sbjct: 331 AEIAGFSAASGNG-VYFIP-AELALSSETFKKWAEDESKKKIV----YDAKRTEVSLRHH 384

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHEC 141
            + +        L+ +       +++    V +    +  + ++     A + KG   + 
Sbjct: 385 GIHLKGVE-FDLLIASYIINPSESIEDFASVAKRHGYNGVQTDD-----AVYGKGAKRKI 438

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
                   H        E  +  +    +  ++ E     E  L  +   +  +G  VD+
Sbjct: 439 PAQEELAGHLARKAAALEALRDKLEDELKENRQYELFYDLEMPLSLILADMESQGVKVDL 498

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                + + ++ +   +++ +  L      +    ++L   LF + GL     T+   +T
Sbjct: 499 ERLQAMGEQINQKLGDIEERIHELAG-EAFNINSPKQLGVILFEKLGLPPVKKTKTGYST 557

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +       ++   R    +     +  L++  +       T      ++TGR
Sbjct: 558 SADVLEKLEDKHEIIREILQYRQ-LGKLQSTYIEGLLKVTDKKTGKVHTRFNQALTQTGR 616

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLV 377
            S      QN+P       +                         +R   + SE G  + 
Sbjct: 617 LSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKGWVIF 651

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +AG++  ++AF   +D++  T    F+V+  +VT + R   K +  
Sbjct: 652 AADYSQIELRVLAHIAGDEKLIEAFREDQDVHTKTAMEVFHVSEGEVTSNMRRHAKAVNF 711

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++    +                                  
Sbjct: 712 --------------GIVYGISDYGLSQ------------------------------SLG 727

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                  +    + + +  V E  +++ Q  +Q  +   + +                  
Sbjct: 728 ITRKEAGQFIDRYLESYPGVREYMDDIIQEAKQ--KGYVSTLLH---------------- 769

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   R     ++ +             R            +Q  + D++ + M++ 
Sbjct: 770 --------RRRYLPEITSRNF---NLRSFAERTAMNTP------IQGSAADVIKKAMIDM 812

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670
                       ++L+VHDE++ E P+ +      +   +M +       +PLK +    
Sbjct: 813 ADRLREEGLQSRLLLSVHDELIFEAPEEEIEILKRIVPDVMENTVD--LDVPLKVDFSYG 870

Query: 671 KRY 673
             +
Sbjct: 871 PTW 873


>gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622]
 gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622]
          Length = 908

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 109/675 (16%), Positives = 191/675 (28%), Gaps = 147/675 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVH---------DPVMPQVLKEALENTDVTIVAHNSYFERT 78
             ++       D         H                 +E LE+  V    H+      
Sbjct: 348 AKLVGLGVALPDGQTAYVPLRHAQLGVTQVRPEAFTAAFREVLEDAAVKKGGHDLKALSL 407

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           VL     + +         +L+          A+     +   +     EL       E 
Sbjct: 408 VLAN-DGITLHGAH-DDVELLSYLLNPSRREHAL-----VDLSRERLNTELPPLPPAAEG 460

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYL 188
                DR   +H     +   +        R +   L                E  L  L
Sbjct: 461 KRGKKDRALADHTVE-EVATGFAIR-AEAARRLAPELWKELEAAKLAALARDMELPLLPL 518

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +  RG  +D A     +  VD       +E+         +     +L   LF E  
Sbjct: 519 LAQMERRGVLLDTAELSRTSVKVDAAVEAQVKEVYRHAG-REFNIGSNPQLVEVLFTELK 577

Query: 249 LHL---EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +        +  Q VL    +  P    +   R   S+     L+TL   + +DGR+ 
Sbjct: 578 LPIIKRGKTGPSADQEVLEKLSEEHPLPGAIIEYR-SLSKLKSTYLDTLPTLVAADGRIH 636

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T     A+ TGR S      QN+P  +    E                         +R
Sbjct: 637 TTYHQA-ATATGRLSSTDPNLQNIPVRTDLGRE-------------------------IR 670

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              +A+EG +LV AD + +E R+LA +A +   ++AF   ED++  T A  F VA  QV 
Sbjct: 671 RAFVAAEGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIHTRTAAEVFGVAKEQVD 730

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           ++QR +                        GL+                           
Sbjct: 731 REQRRVA--------------KMVNFGIAYGLSP-------------------------- 750

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                               + + +  +++ +      L +  ++  + G          
Sbjct: 751 ----HGLGARLGIAQDVARDIIERYFTRYAGIRRY---LEETVDRARKTGYVETLY---- 799

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                              GR     D+ +         +   R            +Q  
Sbjct: 800 -------------------GRRRYMADLNSKN---RGVAQAAERAAINMP------IQGT 831

Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWA 658
           + D++ + M+   +A         ++L VHDE++ E PD +      L    M+S     
Sbjct: 832 AADLIKKAMLAVDEALTAQKLRTRMLLQVHDELLFEAPDAEVEQVKALAVKAMSSVAD-- 889

Query: 659 KGLPLKAEGYESKRY 673
             +PLK E    + +
Sbjct: 890 LKVPLKVEVGAGRSW 904


>gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I]
 gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS]
          Length = 904

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 106/702 (15%), Positives = 192/702 (27%), Gaps = 164/702 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           + +D ET S  ++             ++  +              H             +
Sbjct: 331 VALDTETTSLDEM----------QARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEV 380

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111
              L+  LE+     + H++ ++  V      + +       T++ A          L  
Sbjct: 381 IARLRGWLEDAGRAKLLHHAKYDTHVFAN-EGVSLAGVA-EDTMLQAYVLESHRGVGLND 438

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +              L       E       +       A  L G Y   D   T ++
Sbjct: 439 LAQRF------------LGRSGVNYEDLCGKGAKQIGFDEVAVPLAGHYSCEDSDFTLQL 486

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + L P  +++           ++  +   +   G  VD       +  +  E   L+Q 
Sbjct: 487 HEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQR 546

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
              L      +    ++L   LF   GL +   T     +T + VLS   +  P    + 
Sbjct: 547 AYELAGQP-FNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLL 605

Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             R   S+      + L   ++   GR+        A  TGR +      QN+P  + + 
Sbjct: 606 EYR-GLSKLKSTYTDKLPRMISPATGRVHTHYSQA-AVITGRLASSDPNLQNIPVRTEAG 663

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      VR   IA +G KL+ AD + IE R++A ++ + 
Sbjct: 664 RR-------------------------VREAFIAEQG-KLLSADYSQIELRIMAHVSDDA 697

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              +AF  GED++  T +  F V  A+V  +QR   K +   L Y  G          + 
Sbjct: 698 NLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV-----FGLASN 752

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +   A     +     +     +    +    +    +   G   +            
Sbjct: 753 LGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQL---------PD 803

Query: 517 VSEL----WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +            +A       G A    K   V +                        
Sbjct: 804 IRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLD------------------- 844

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                           R  T        I+Q                    +VL      
Sbjct: 845 --------------AERLRT------RMIMQ-------------VHDE---LVL------ 862

Query: 633 VCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
             E PD +    +  L  LM    +    +PL AE      +
Sbjct: 863 --EVPDEELAAVAEALPRLMCDVAT--LRVPLVAEVGMGTNW 900


>gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93]
          Length = 878

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 89/655 (13%), Positives = 195/655 (29%), Gaps = 125/655 (19%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           ++ FA    +     +      +   +    LE+        +       LK    + + 
Sbjct: 334 ILGFAIA--NEHGNFFIRTDTALSSSLFTTWLEDESKKKSVFDGKRAIVSLKWQ-GVHLR 390

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             +    L+ +       + + V    K       +  E +  + KG   +   ++    
Sbjct: 391 GIQ-FDLLIASYLLNPSQSTEDVASIAKTKQYVGVQSDEAV--YGKGAKQKVPDEQVLAE 447

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           H           +       +  ++    +  E  L  +   +   G  VDV     + +
Sbjct: 448 HLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVERLKEMGE 507

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
            +  +  +++QE+  L      +    ++L   LF +  L +   T+   +T   VL   
Sbjct: 508 ELAEQLKEVEQEIYRLAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSAEVLEKL 566

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   ++ + R    +     +  L++ ++ D     T+     ++TGR S      
Sbjct: 567 APQHEIVEKILHYRQ-LGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLSSTEPNL 625

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIE 385
           QN+P       +                         +R   I       +  AD + IE
Sbjct: 626 QNIPIRLEEGRK-------------------------IRQAFIPSEPDWVIFSADYSQIE 660

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA +A ++  + AF  G D++  T    F+V+  +VT + R   K +   + Y    
Sbjct: 661 LRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGIS- 719

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                   +  LN+             E +   + + + + +   +              
Sbjct: 720 ----DYGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEAKQKGYVTTL------- 768

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                                               +RR +P +  +             
Sbjct: 769 ----------------------------------LHRRRYLPDITSRNFNLRSF------ 788

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
                      R+ +NT                   +Q  + DI+ + M++ +K      
Sbjct: 789 ---------AERTAMNT------------------PIQGSAADIIKKAMIDLSKRLQKEN 821

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               ++L VHDE++ E P  +      +   +M +       +PLK + +    +
Sbjct: 822 MKARMLLQVHDELILEAPKDEIERLQQIVPEVMENAVQ--LRVPLKVDYHFGPTW 874


>gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
 gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10]
          Length = 893

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 116/696 (16%), Positives = 209/696 (30%), Gaps = 151/696 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVL 57
            ID ET S              D  +   +  F           H       +  + + L
Sbjct: 321 AIDLETSSLDPF----------DCDIAGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           KE LE+    IV  N  F+  VL       +P H    T++ A           L  +  
Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPH--FDTMIAAYLIEPNEKKFNLDDLA- 427

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            LK    KM   +EL++                            Y   D  +T  ++K 
Sbjct: 428 -LKFLGYKMTSYQELMSFSSP--------LFGFSFVDVPLEKAANYSCEDADITYRLYKT 478

Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L                E  L  +   +   G  VD      L++    +  +L +E+  
Sbjct: 479 LSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHL-EDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
           +      +    +++   LF + G+      T+    +T   VL            +   
Sbjct: 539 IAG-EPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R +  +     ++ L + +N   GR+  +    G + TGR S      QNLP  S   +E
Sbjct: 598 R-KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLPTKSEEGKE 655

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQW 397
                                    +R  ++       +V AD + IE R+LA ++G++ 
Sbjct: 656 -------------------------IRKAIVPQDPNWWIVSADYSQIELRILAHLSGDEN 690

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L+AFE G D++  T +R FNV P +VT++ R  GK++  ++ Y            +  L
Sbjct: 691 LLRAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTP-----YGLSVRL 745

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +          +    +    ++ + +     E        G   +  +   R ++   
Sbjct: 746 GVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRN--- 802

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                E  +    T   G A    K   + +                 R L  R + +  
Sbjct: 803 --TQAEGERIAINTPIQGTAADIIKLAMIEID----------------RELKERKMRSK- 843

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                                  I+Q                    +V  V DE      
Sbjct: 844 ----------------------MIIQ-------------VHDE---LVFEVPDE------ 859

Query: 638 DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +    ++   M +       +PL+ +    K +
Sbjct: 860 -EKDALVELVKDRMMNVVK--LSVPLEVDVTIGKTW 892


>gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment']
          Length = 873

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 90/672 (13%), Positives = 196/672 (29%), Gaps = 152/672 (22%)

Query: 25  AEDVCVILFAFGFDDHPV-ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
             D      AF  +       +         + ++  L       + H+      ++ A 
Sbjct: 326 TADGEFFGLAFCAEPDVALCCFPDAMTDSYLERVRPVLAGERPGKIGHDLK---RIMTAI 382

Query: 84  FNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
               + +      T+V +       +  ++                L+      +  +  
Sbjct: 383 GKKGVALRGLSFDTMVASYLLNPNRSDHSLAT--------------LVFELLGVKWEQGP 428

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTI 192
             R      +           +  +  ++ + L P            + E  L  +  ++
Sbjct: 429 GARGGN---DGRETAMRGAAEEAHLVWQLKEALLPQLGQAGLLPLFTTIEMPLIEVLASM 485

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
            + G+ VD      L + ++ + ++L+  + +L      +    ++L   LF    L   
Sbjct: 486 EEVGFSVDTDQLSELGKELESQLSRLESRIFALAG-EHFNINSPKQLAEVLFQRLKLTPL 544

Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTL 308
             T+   +T   VL           +V N R   ++     ++ L+     + GR+  + 
Sbjct: 545 KRTKTGYSTNVEVLQRLAVTHELPAEVLNYR-SLAKLKSTYVDVLLRLAERTSGRIHTSF 603

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P  +                              +R   
Sbjct: 604 NQ-TVTATGRLSSSEPNLQNIPVRTEVGRR-------------------------IRQAF 637

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +ASEG +L+ AD + IE R+LA ++ +Q  + AF  G D++ +T A  F V P  VT + 
Sbjct: 638 VASEGHRLLSADYSQIELRILAHLSQDQALIAAFIAGGDVHRSTAAEVFGVQPEAVTVEM 697

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   KV+                    G++    A  ++                     
Sbjct: 698 RRRAKVINF--------------GIVYGMSPFGLAAELEI-------------------- 723

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                                + Q +  V    +       +                  
Sbjct: 724 ----------SQEEAALYIDRYFQIYHGVKAFIDRTICEARE------------------ 755

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                      +    GR     ++ ++   +     +L              +Q  + D
Sbjct: 756 --------LGFVSTFWGRRRAIPELKSSDQTVRQLGERL---------AVNTPIQGSAAD 798

Query: 609 ILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL 661
           ++   M+  ++          ++L +HDE++ E P+ +   A  +    M    +    +
Sbjct: 799 LIKVAMIAISRRLRSEQLETRMILQIHDELLFEVPEVELDVARRMATEEMEWAAT--LSV 856

Query: 662 PLKAEGYESKRY 673
           PLK +      +
Sbjct: 857 PLKVDIGVGTSW 868


>gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 886

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 93/687 (13%), Positives = 188/687 (27%), Gaps = 144/687 (20%)

Query: 10  TRSPIDLTKCGICKYAED---VCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKEALENTD 65
           T    ++    +  + E+     ++            L +D +        ++  L +  
Sbjct: 317 TADLPNIEGIIVESHGENPHQAEMMGMVLSTASRHYFLSFDVLQSEAA-AEVRAWLADEQ 375

Query: 66  VTIVAHNSYFERT----VLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKL 118
           V        ++      VL     +           + A       +   +  +    +L
Sbjct: 376 VPKRG----YDLHRADLVLFWH-GVAFAGAE-HDVQLAAYLLDPTESDQTISGLAAKYQL 429

Query: 119 SSQ-KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 +E     A+F   E    +  R+     +A        + D       ++  + 
Sbjct: 430 PQVPGDDEVYGKGAKFKVPEPD--VLSRHLARKADALLRILPLQRED----LAKYEMEKL 483

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   +  +G  V+      L    + +  KL   +  +      +    +
Sbjct: 484 FYELEMPLSRILADMEKQGVAVNKEALKELGVEFEAQINKLVARIYEIAGQ-EFNINSTK 542

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF + GL +   T+   +T   VL            +   R   ++     +  L
Sbjct: 543 QLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHEIVQFILEYRQ-LAKLQSTYVEGL 601

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ ++       T      + TGR S      QN+P       +                
Sbjct: 602 LKEISPKTGKVHTYFRQTIAATGRLSSQYPNLQNIPIRLEEGRK---------------- 645

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   +   EG  ++ AD + IE RVLA ++G+    +AF    D++  T 
Sbjct: 646 ---------IRKVFVPSEEGWFILSADYSQIELRVLAHISGDPGLQEAFLHDMDIHTKTA 696

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F V P QV  + R   K +   +                G++    +          
Sbjct: 697 MDVFGVGPDQVDANMRRSAKAVNFGIV--------------YGISDYGLSQ--------- 733

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                          R  + +      V    +E+ +A ++   
Sbjct: 734 ---------------------NLNITRKEAARFIEQYFNAFQGVRRYMDEIVKAAKR--- 769

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                                  +  +     R     ++  +            R    
Sbjct: 770 -----------------------DGYVKTLLERRRYLPEINASNF---NLRSFAERTAMN 803

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML 647
                   +Q  + DI+   M+   +          ++L VHDE+V E P  +    S L
Sbjct: 804 TP------IQGTAADIIKLAMVRMDEELHKHGLKSRMLLQVHDELVFEVPPEELEFMSKL 857

Query: 648 Y-HLMTSNPSWAKGLPLKAEGYESKRY 673
               M         +PLKAE      +
Sbjct: 858 VPETMGKALE--LSVPLKAEVSSGLNW 882


>gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7]
 gi|89517759|gb|EAS20415.1| DNA  polymerase I [Flavobacteria bacterium BBFL7]
          Length = 946

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 106/694 (15%), Positives = 214/694 (30%), Gaps = 150/694 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           +  D ET     LT            ++  AF ++           D      +   LK 
Sbjct: 375 VCFDTETTGLDPLT----------AELVGIAFSWEKGKGFYLPIPEDREAAQVIVDQLKP 424

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE-AL 116
             E+  +  V  N  ++  VL     +D+       T++            +  + E  L
Sbjct: 425 FFESASIEKVGQNLKYDIKVLDKY-GVDVK-GPMFDTMLAHYLINPDMRHNMDVLAETYL 482

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             + Q + E   LI +                          EY   D  +T ++ +   
Sbjct: 483 NYTPQSIVE---LIGK---------KGKNQLSMRDVDLEKQKEYAVEDADITLQLKEHFT 530

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P              E  L  +   +   G  +D     +L+  ++ + T+L++++  + 
Sbjct: 531 PELASAGTDKLFKDIEMPLLDVLAAMEIEGINLDEDFLSSLSGDLETDITQLEKDIYEVA 590

Query: 227 YGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L   LF +  L      T+    +T + VLS   K       V + R 
Sbjct: 591 G-EEFNIGSPKQLGVILFEKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHAIIQNVLDYR- 648

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             S+     ++ L   +++  +   T      + TGR S      QN+P  +        
Sbjct: 649 GLSKLKSTYVDALPNQVDAKTQRIHTNYMQTVAATGRLSSTDPNLQNIPIRTERGR---- 704

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR   I   E   L+ AD + IE R++A ++ E+  + 
Sbjct: 705 ---------------------QVRKAFIPRDENYTLIAADYSQIELRIIAALSEEENMIA 743

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF++GED++ +T A+ FNVA   VT++QR+  K +   + Y   A        +   +L+
Sbjct: 744 AFQSGEDIHASTAAKVFNVALEDVTREQRSNAKTVNFGIIYGVSA-----FGLSNQTDLS 798

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   ++    +   + + +   +   E+   +  +G    R  K     ++ V   
Sbjct: 799 RGEAKELIDTYYATYPKLKAYMQDQVDFARENGYVETVLGR--RRYLKDINSSNAVVRG- 855

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +        G A    K   +                         ++      +
Sbjct: 856 --AAERNAVNAPIQGSAADIIKIAMI-------------------------NIHKKFEEM 888

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPDT 639
           N  ++                            ++        +V  +H DE+       
Sbjct: 889 NCKSKM---------------------------LLQVHDE---LVFDIHNDEL------- 911

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    ++   M +   +   +PL  E    + +
Sbjct: 912 -EDMKKLIQGEMQNA--YKMTVPLDVEVGTGQNW 942


>gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
 gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB]
          Length = 902

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 191/702 (27%), Gaps = 161/702 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52
            + I  ET     +             +   +FGF+D          D            
Sbjct: 326 VVSIQVETTRKDAMAS----------DLAGLSFGFEDDGAWYVPLGPDGSEGDGRLPAAV 375

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
               L+  L  +    + H+      V K    +++       T+V A            
Sbjct: 376 ALAALEPVLGRSRPAKIGHDLKTAWIVFKKH-GIELRGIA-FDTMVAAYLLDPGK----- 428

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            +   +        + L       E                      Y        R + 
Sbjct: 429 -QNYGIDR---VAAECLGENIDSYEDVTGKGKSQVGFDTIDIGRAAAYSCAAADAARRMH 484

Query: 173 KRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             L+    + +           L  +   +  RG   D     +L+        +    +
Sbjct: 485 PVLKRKLDESRLTELFEKIELPLITVLARMEFRGITADAEKLESLSIDFQKALDRTADTI 544

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279
             L      + +  ++L   LF + GL +   T++   T   VL       P A  V   
Sbjct: 545 YDL-AKEKFNIQSPKQLAYILFEKLGLRVVKKTKSGPSTDMAVLEELALEHPIADHVLVF 603

Query: 280 RMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   ++      + L + +N   GR+  +     A+ TGR S      QN+P  +    +
Sbjct: 604 R-TLAKLKGTYADALGKLINPRTGRIHTSYNQTVAA-TGRLSSSDPNLQNIPIRTEEGRK 661

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +RS  I + G  L+ AD + IE R+LA  + ++  
Sbjct: 662 -------------------------IRSAFIPAPGWLLLSADYSQIELRILAHCSKDEHL 696

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF   ED++  T A  F V+P +VT + R   K +                    G+ 
Sbjct: 697 LEAFRDDEDIHRRTAAEMFGVSPIEVTPEMRRQAKTINF--------------GIIYGMG 742

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
               A                                              + Q +  V 
Sbjct: 743 PFGLAQR------------------------------LRISTKTARTAIDKYFQGYRGVR 772

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
              +   +   +                                  GR     ++ +   
Sbjct: 773 RFIDTTIELARR--------------------------LGYSETLLGRRRFIPELQSRNK 806

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD--IVLTVHDEI 632
            +        R             Q  + D++ + M++A  A    G    ++L VHDE+
Sbjct: 807 TIRQL---GERLAINTPL------QGTAADLIKKAMIDAEDALNGSGLRTVMLLQVHDEL 857

Query: 633 VCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           V ETP  +   A  L   +M     W   +PLK E      +
Sbjct: 858 VFETPREELAAAQELVRRVMEDV--WKLDVPLKVELGWGDNW 897


>gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2]
 gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2]
          Length = 890

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 96/689 (13%), Positives = 192/689 (27%), Gaps = 150/689 (21%)

Query: 12  SPIDLTKCGICKYA-----EDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTD 65
           S +  T+ G+   A         V+  A    D    +             L++ LE+ D
Sbjct: 321 SALQGTEHGLYVEAIGENPHQAEVLGLAAAVGD-TAYVVPVAALQQPFTAELRKWLEDAD 379

Query: 66  VTIVAHNSYFERTVLKACFNL-DIPI-HRWICTLVLARSNGLP---SALKAVGEALK--- 117
                    F+   ++       I          + A           L A+ +      
Sbjct: 380 KPKNG----FDTHKIELALGWRGIEWHGAAFDVQLAAYLLDPTDTNLTLNALCDRYGQSS 435

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV--TREIFKRL 175
           +   +   GK                 R+     +A R      + D+      E++   
Sbjct: 436 VPHDEAVYGKG----AKFKVPDNETLHRHLSAKADAVRKLTSLMRADLEKRGMNELYF-- 489

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
                 EQ L  +   +  +G  V+ A    L   ++ + +    E+  L      +   
Sbjct: 490 ----ELEQPLSVILAGMERQGIKVEKAELERLGSELETKLSAAVSEIYRLAEM-EFNIGS 544

Query: 236 LEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++L   LF + GL ++  T+   +T   VL            + + R   S+     + 
Sbjct: 545 PKQLGEVLFEKLGLPVQKKTKTGYSTDAEVLEKLAPYHEIVPLILHYR-TLSKLQSTYIE 603

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L++ +  +     T      + TGR S      QN+P                      
Sbjct: 604 GLLKEVRPETGKIHTYYRQTIAATGRLSSQFPNLQNIPIRLEEGR--------------- 648

Query: 353 DPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                      +R   +    G  ++ AD + IE RVLA ++G++   +AF    D++  
Sbjct: 649 ----------QIRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTK 698

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F V+  QV  + R   K +   +                G++    +        
Sbjct: 699 TAMDVFGVSADQVDSNMRRSAKAVNFGIV--------------YGISDFGLSQ------- 737

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                            +  + + +    V +  +++     + 
Sbjct: 738 -----------------------NLNITRKEAAKFIEQYFEVFQGVRKYMDDIVMQARR- 773

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                    +  +     R     D+  +            R  
Sbjct: 774 -------------------------DGFVTTLLERRRYLPDIKASNF---NLRSFAERTA 805

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNA 644
                     +Q  + DI+   M+   +          ++L VHDE+V E P +  E   
Sbjct: 806 MNTP------IQGTAADIIKLAMVRMNETLRERGLKSRMLLQVHDELVFEVPEEELELMK 859

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++   M    +    +PLKA+      +
Sbjct: 860 ELVPSTMAGALT--LDVPLKADVNYGVNW 886


>gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519]
 gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii]
          Length = 888

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 99/645 (15%), Positives = 194/645 (30%), Gaps = 141/645 (21%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
           +      LK+  EN ++    +N   +  +LK    +++    +    +        S+ 
Sbjct: 360 EEKDVLKLKDVFENPEIKKYGYNLKNDCLILKPYE-INL-TGLYFDIAIAEYLIDSTSSN 417

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-- 167
                       K    K  +      E         K     +      Y    + +  
Sbjct: 418 Y---------EIKDIALKYNLGDVLSLEELLGKGKSKKDFKDLSDAQISGYACSVLDIVD 468

Query: 168 --------TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                   T E +         E  L  +   +   G   D  + + L Q  D+E   L+
Sbjct: 469 KGKEALITTIENYNMHNLFYEVEMPLVEILADMEYIGISADKEVLNELKQKFDIEIKTLE 528

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQV 276
             +     G   +    ++L   LF + GL     T+   +T   VL +     P   ++
Sbjct: 529 ASIYE-YAGENFNINSPKQLGHILFDKLGLPAIKKTKTGYSTNAEVLEALSDKHPIIDKI 587

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++     ++ L+  +N   GR+  +      + TGR S      QN+P     
Sbjct: 588 TLYRQY-TKLQSTYVDGLLNIINPKTGRIHSSFNQ-TITTTGRISSTEPNMQNIPVRLEI 645

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             EL                         R   +A E   LV AD + IE R+LA +A +
Sbjct: 646 GREL-------------------------RKVFVAPEDMYLVDADYSQIELRILAHIAND 680

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF  G+D++  T +  FNV   +VTK+ R+  K +   + Y            + 
Sbjct: 681 EGLIDAFSKGDDIHTITASEVFNVPLDEVTKELRSAAKAVNFGIVYG-----ISDFGLSN 735

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L                                              +     +  ++ 
Sbjct: 736 NLG---------------------------------------ISKQVAKEYIDNYFARYP 756

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V +   ++ +  +                           +  +    GR     ++G+
Sbjct: 757 YVKKYMEDIVEKAKN--------------------------DGYVETYIGRRRYIPELGS 790

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVH 629
           N   +    ++L              +Q  + D++   M+              ++L VH
Sbjct: 791 NNFIMKNLGKRL---------AMNTPIQGSAADVIKIAMVKVYARLKSEGLKSKLILQVH 841

Query: 630 DEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           DE++ E+PD+++   +  L   M S       + L  +    K +
Sbjct: 842 DELIIESPDSEKSYVADLLKEEMESAVD--LNVKLTVDAKWGKSW 884


>gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
 gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1]
          Length = 874

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 99/673 (14%), Positives = 189/673 (28%), Gaps = 173/673 (25%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +I  A  +           H+    +++ + L +  +  V +N+  +          ++ 
Sbjct: 342 LIGLAI-WAGDEAVYIP--HNVNGWELVWDLLADETIPKVTYNAK-DVCNACKAKGTELR 397

Query: 90  IHRWICTLVLARSNGLPSA---LKAVG-EALKL---SSQKMEEGKELIARFCKGETHECL 142
                   + A      +A   L  +  + L L      K   G                
Sbjct: 398 -GLCFDIQLAAYLLEPTAAKYPLTELACQHLGLAVGDMDKEHLGTP-------------- 442

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTI 192
                           +Y      V + ++  L+               E  L  +   +
Sbjct: 443 ----------------DYAGWAAEVVQRLYPVLKEKLVAAGLAELYEEIELPLVPVLSEM 486

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD+     L Q +      L  E+  L      +     +L   LF    L + 
Sbjct: 487 EIAGIRVDLTQLDALAQEITDRIETLLTEIYQLAGQ-EFNVNSTRQLGHILFEVLKLPVI 545

Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
             T+   +T   VL       P    +   R+  ++     L+ L + + +D GR+    
Sbjct: 546 KKTKTGYSTDAEVLEKLAGQHPLIDCLLEYRL-LTKLKSTYLDGLRDLIRADTGRIHTHF 604

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P  +                              +R   
Sbjct: 605 NQ-TVTATGRLSSSEPNLQNIPIRTEIGRR-------------------------IRELF 638

Query: 369 IASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +   G   +  AD + IE RVLA M+G+   + AF   +D++  T A  F V  A+VT  
Sbjct: 639 VPGPGYDWIMSADYSQIELRVLAHMSGDDNLIDAFRHNQDIHTHTAAEVFGVPMAEVTAQ 698

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            RA  K +   + Y            +  + ++        +S   ++   +N+   +  
Sbjct: 699 MRARAKAVNFGIVYGIS-----DFGLSRDIGVSRKEAGQYIDSYFAKYRGVKNYIDNVIN 753

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
              +                                                  +RR +P
Sbjct: 754 LARQQGYVTTLF-----------------------------------------GRRRFLP 772

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
            +                           R+ +NT                   +Q  + 
Sbjct: 773 DINSGNFNQRAF---------------AERTAMNTP------------------IQGTAA 799

Query: 608 DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKG 660
           DI+ + M+         +    ++L VHDE+V E  + +    + L    M    + A  
Sbjct: 800 DIIKKAMITVYRQLRDRRLKSRLLLQVHDELVLEVAEAERVLVAQLVKQAMEDAVTLA-- 857

Query: 661 LPLKAEGYESKRY 673
           +PL A+      +
Sbjct: 858 VPLVADVKTGANW 870


>gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
 gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228]
          Length = 847

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 98/701 (13%), Positives = 213/701 (30%), Gaps = 171/701 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET S             ++  ++ F+F   ++        H        +  Q 
Sbjct: 286 IIAFDTETTS----------IDTKEAKIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQS 335

Query: 57  LKEALENTDVTI---VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111
            K+A+E   +     + HN  ++  +++  F L +P  ++  T++LA          +  
Sbjct: 336 AKKAIE--LIFKHFIIGHNLKYDFKIIENNFKLSLP-QKYADTMILAWLKNPSLRVNMDD 392

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +   L+L + +    + L+              + +           +Y   D  +T   
Sbjct: 393 LA--LRLFNYETLHFESLVK-------------KGENFASVELEKACKYAAEDAYITLRF 437

Query: 172 FKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +                    +   +   + + G  +D      L +  + E   L +E+
Sbjct: 438 YLYFLKNLEPHLLDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEI 497

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
            +L      +    +++   LF +  L      +   +T ++VL+      P   ++ + 
Sbjct: 498 YALCEDR-FNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDY 556

Query: 280 RMRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           R   ++        L++    D   R+  +    G + TGR S      QN+P   +  +
Sbjct: 557 R-ELAKLYSTYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAK 614

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           +                          +SC IA EG   +  D + IE R+LA  + ++ 
Sbjct: 615 DY-------------------------KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEK 649

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            L AF+  ED++  T    F     +   + R+I K +   L Y  G             
Sbjct: 650 LLNAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMG------------- 692

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                          +   +          +   + + +  + +
Sbjct: 693 -------------------------------YKTLSKNLKIEANLAKTYIEKYFENFTSI 721

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
              + ++    +                           N  +   SGR   +       
Sbjct: 722 KSYFEKVKNEAK--------------------------ANGFISTLSGRKRYFDFENAKP 755

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVC 634
             +            Y  +   +I+Q  + DI+   M+   K       ++L +HDE++ 
Sbjct: 756 MQV----------AMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIF 805

Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E  D    N       +M +       + LK     +K++ 
Sbjct: 806 EVKDELCENFVKKTSDIMENIVK--LKVKLKTSSSIAKKWG 844


>gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
 gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1]
          Length = 938

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 107/703 (15%), Positives = 201/703 (28%), Gaps = 160/703 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQ 55
           + +D ET S   L          +  ++  +   +          H           +  
Sbjct: 358 IALDTETTSTDPL----------NGALVGISLAVEPGTGYYLPVGHLTGEPQLPLESIRD 407

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112
            L   L +     V  N  ++   L     ++        TL+             LK +
Sbjct: 408 ALAPFLGDPRKPKVGQNLKYDLLAL-RLAGMEAQGLA-FDTLLAEWLVDPASRALGLKEM 465

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E       +M   +ELI                +   + +      Y   D  +T  + 
Sbjct: 466 AERY--LGVQMTRIEELI----------GTGKNQRTMAQVSVAQVAPYAAADAEITLRLK 513

Query: 173 KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             LE               E  L  +   +   G  +DV     +   +     ++++E+
Sbjct: 514 PILEERMLKAGVTRLFQDVEMPLVPVLADMEWNGILLDVPFLQRMGVELSQRLAEIEKEI 573

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-------TTCQRVLSSNKKLTPQAIQ 275
            +L      +    ++L   LF E  L   D  +       +T   VL   +   P    
Sbjct: 574 YALVGHP-FNINSTQQLSRVLFEELRLEPPDRRKKTSAGLYSTSAEVLEELRGRHPVLDL 632

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +  NR   S+     ++ L + +N   GR+       G+  TGR +      QN+P  + 
Sbjct: 633 ILENR-ELSKLKSTYVDALPQQVNPRTGRVHTRFNQTGS-VTGRLASSDPNLQNIPTRT- 689

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                    +   VR+  IA EG  L+  D + IE R++A +A 
Sbjct: 690 ------------------------DLGRQVRNAFIADEGWVLLSVDYSQIELRIVAHVAN 725

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  L AF  G+D++  T A  + V    VT++ R   K +   L Y   A        +
Sbjct: 726 DEAMLAAFRAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFGLIYGMSA-----FGLS 780

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ-- 512
              +L          +  E++   + F   ++         +  +G       + +    
Sbjct: 781 RSADLTLAEAENFVKAYFEQFPGVKRFLDDLRRRAAREGYVETLLGR------RRYFPNL 834

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           K+     L     +        G A    K                ++ LP         
Sbjct: 835 KNPANPALKAREEREAINAPIQGTAADIIK--------------LAMIRLPEALR----- 875

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                          +R                        ++        +VL      
Sbjct: 876 ------------AAGSRARL---------------------LLQVHDE---LVL------ 893

Query: 633 VCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             E P  +    A ++ H+M +   +   +PL  E    K + 
Sbjct: 894 --EVPREEMPGTAKLVQHVMETA--YPLQIPLTTEARWGKNWG 932


>gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001]
 gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001]
          Length = 913

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 115/699 (16%), Positives = 200/699 (28%), Gaps = 158/699 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +T            ++  +F  +          H             + 
Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSFAVEAGHAAYVPVAHRGPDAPVQLPRDEVL 388

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+     V  +  ++  VL     +++       TL+ +              
Sbjct: 389 AKLKPWLESAKHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVLESHRPHDMDNL 446

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A     EY   D  +T  + + 
Sbjct: 447 ALRHLGVKTI----------KYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQT 496

Query: 175 LEPLSSKEQ-----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P  + E+               + + +   G  +D       +  +     +L+ E  
Sbjct: 497 LYPQLAAEKTLEHVYRDIEVPTSRVLRKMERTGVLIDAEKLRLQSSEIAARLIELESEAY 556

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F    L +   T +    T + VL    +  P    +  +
Sbjct: 557 VLAGG-EFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEH 615

Query: 280 RMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R   S+      + L   +N S GR+        A  TGR +      QN+P  +     
Sbjct: 616 R-GLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVA-VTGRLASNDPNLQNIPVRTGEGRR 673

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA  G KLV AD + IE R++A ++G++  
Sbjct: 674 -------------------------IREAFIAPPGHKLVSADYSQIELRIMAHISGDESL 708

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF  GED++  T A  F+V P +V+ DQR + KV+   L Y             + L 
Sbjct: 709 LRAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMS-----SFGLASNLG 763

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +   A  +  +     +     +    + +       +   G          R     ++
Sbjct: 764 ITRDAAKLYIDRYFARYPGVARYMDETRLSAKAKGYVETVFGR---------RLWLPEIN 814

Query: 519 E----LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                      +A       G A    K   + +    ++ N                  
Sbjct: 815 GGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVQKWIEESNIG---------------- 858

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                  T  I+Q                    ++L V DE   
Sbjct: 859 -----------------------TRMIMQ-------------VHDE---LILEVPDE--- 876

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E P+        L  LM      A  +PL AE      +
Sbjct: 877 ELPE----VRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909


>gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
 gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2]
          Length = 888

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 96/708 (13%), Positives = 211/708 (29%), Gaps = 180/708 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           +  D ET   +D  K           ++ F+F + +         H+             
Sbjct: 321 VAFDTETD-DLDTKK---------ANLVGFSFAYSEEKAYYVPIGHNYLGVGDQVGLDKA 370

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111
            + + +  E    TI+ HN  F+ ++L     +D      + T++LA      S+  L++
Sbjct: 371 LEAISKIFE---HTIIGHNLKFDLSLLYRY-GID-EKKDIVDTMILAWLVDPGSSVGLES 425

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           V +             ++IA             + +   + +     +Y   D  +T  +
Sbjct: 426 VAKRF--------LDHDMIAYKE-------TVKKGEDFSQVSIDAACKYASEDAVITYMV 470

Query: 172 FKRLEPLSSKEQELWYLD-------------QTINDRGYCVDVALAHTLNQIVDVERTKL 218
           + +L     K+     +D               +   G  +D+     L   ++    ++
Sbjct: 471 YFKLLDALRKQGASHLIDEAKKVEFPFVNTLIHMEQAGIKIDIPFFEELKSSLEKRIDEI 530

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQ 275
            Q++     G   +    ++L   LF +  L     T++   T +  L + K   P    
Sbjct: 531 TQKIYE-YAGGEFNINSTKQLAAILFEKLKLPPLKKTKSGYSTNETTLQALKDKHPIIPL 589

Query: 276 VFNNRMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           +   R    +     ++ L+     +   R+  +    G + TGR +      QN+P  +
Sbjct: 590 LLEYR-ELYKLKSTYIDPLINYAKRDPKHRIYTSFIQTG-TATGRLASKNPNLQNIPIKT 647

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               +                         +R   IA EG+ L+  D + IE R+LA  +
Sbjct: 648 ELGRK-------------------------IRYGFIAGEGRLLIGIDYSQIELRLLAHFS 682

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L+AF+ G D+++ T  + F     +  K++R I K +                  
Sbjct: 683 KDPALLEAFQKGRDIHMETAIKLFGK---EHAKEKRNIAKSINF--------------GL 725

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+                                 + A          + + +++   
Sbjct: 726 IYGMG------------------------------SRKLAETLGISTKEAKAIIESYFAS 755

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              V      +    +         + ++RR     +    +                  
Sbjct: 756 FPTVKSYLESVENFAKT--HGYVETLLKRRRYFDFAHASGAQ------------------ 795

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
                              Y  + T  + Q  + D++   M               I+L 
Sbjct: 796 ----------------LAAYLREATNTVFQGSAADLIKMAMNKIKNVIDEKQLEAKILLQ 839

Query: 628 VHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +HDE++ E  +      A     +M +       +P++     ++ + 
Sbjct: 840 IHDELIFEVQENQAQELAEEFKQIMQTIHP--LNVPIECSVQIARNWG 885


>gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
 gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3]
          Length = 924

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 101/696 (14%), Positives = 201/696 (28%), Gaps = 152/696 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLK 58
            + +D ET S              +  +   +   +           D +    + + LK
Sbjct: 352 HIAVDTETTSLD----------VFEAELAGISLCAEAGKAFFIATTPDALERKEVVKQLK 401

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEAL 116
             LEN  +T    N  ++  VLK    +++       T++ +          L  +    
Sbjct: 402 PLLENPAITKSGQNLKYDMLVLKKY-GIELAPIS-FDTMLASYVLNPDEHHNLDDMALRY 459

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                       L     K +       + +            Y   D  V  ++ + L+
Sbjct: 460 ------------LGRTTTKYDELTGTGKQRRHIFEVEKEALTNYACQDADVAFQLEEVLQ 507

Query: 177 PLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                           E  L  +  T+   G  +D      + +  ++E   L   + + 
Sbjct: 508 AQLQAEPQLLALCTTMEFPLVRVLATMEYAGIAIDTEHLARVAETTELELQSLTDNIYAA 567

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282
                 +    ++L   LF +  L     T+   +T   VL       P A  + + R  
Sbjct: 568 AGSS-FNIDSPKQLSHVLFTDLSLPTGKSTKTGFSTDVGVLEELAATYPIASDLLSYR-T 625

Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             +     +  L + +N   GR+  +      + TGR S      QN+P  +   +E   
Sbjct: 626 LQKLKGTYIEALPKIINPRTGRIHTSFNQHI-TATGRLSSSNPNLQNIPVRTALGKE--- 681

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +R   I S     L+ AD + IE R+ A ++G++  + 
Sbjct: 682 ----------------------IRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIA 719

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  GED++  T    F     +++ D R   K +   + Y       Q       LN+ 
Sbjct: 720 AFRNGEDIHTATAQVIFGT--EEISSDMRRKAKEVNFGVLYG-----IQPFGLAKRLNIP 772

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                V   +   ++    N  R + E   E       +G    R       ++      
Sbjct: 773 QKEAKVIIETYKAKYPQLFNVLRHIIEEGKEKGYVTTLLGR--RRYIADLNSRN------ 824

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +A E+                                               + +
Sbjct: 825 -GTVQKAAERA-------------------------------------------AMNTPI 840

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
             T   + +       L    +QA    + +E ++               E++ ET D++
Sbjct: 841 QGTAADIIKCAMN---LCYQQMQASG--MASEMLLQVHD-----------ELLFETTDSE 884

Query: 641 EFNASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673
           +   + L    M         K +P++ +    K +
Sbjct: 885 KEALTKLVENAMKEAAVLCGMKQVPVEVDCGVGKNW 920


>gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
 gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831]
          Length = 880

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 89/657 (13%), Positives = 193/657 (29%), Gaps = 129/657 (19%)

Query: 30  VILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
           +   A   +         D   +  +    K   E+     +  ++   +  L    N++
Sbjct: 336 IEGIAV-VNKERASFIPTDIALNSNI---FKAWAEDPQKHKIVFDAKRTKVALLRN-NIN 390

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       +L+ +           +       S+   +  E +  F KG   +       
Sbjct: 391 MQGI-IFDSLLASYLLNPAENNHDIPAIANRKSRSDVQFDEEV--FGKGAKQKVPEADVL 447

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
             H             ++       ++ E L   E  L  +   +   G  VD+     +
Sbjct: 448 NEHVVRKTQLLFDLYPEMEEELGNNEQYELLKELEMPLALILAEVEHYGVQVDIDKLKDM 507

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
            + +    + L+QE+  L      +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 508 GEDLKERLSTLEQEVYELAG-ETFNLNSPKQLGPILFEKLGLPVIKKTKTGYSTAADVLE 566

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             +       ++   R    +     +  L++ +  D     T      ++TGR S    
Sbjct: 567 QLENEHDIIPKLLMYRQ-LGKLQSTYIEGLLKVVRKDTSRIHTRYNQALTQTGRLSSIEP 625

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAG 383
             QN+P       +                         +R   +   +   +  AD + 
Sbjct: 626 NLQNIPIRLEEGRK-------------------------IRQAFVPSKDNWIMFAADYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA +AG++  +KAF+   D++  T    F+V   +VT + R   K +        
Sbjct: 661 IELRVLAHIAGDEKLIKAFKEDTDIHTQTAMDVFHVESDEVTSNMRRQAKAVNF------ 714

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++    +                                        
Sbjct: 715 --------GIVYGISDYGLSQ------------------------------NLGITRKEA 736

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           ++  + +   +  V    +E+ Q  +                          +   +   
Sbjct: 737 KKFIERYFNSYPGVKTYMDEIVQEAK--------------------------HKGFVSTI 770

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
             R     D+ +    + +      R            +Q  + DI+ + M++       
Sbjct: 771 MKRRRYLPDITSRNFNMRSF---AERTAMNTP------IQGSAADIIKKAMIDLDHRLKE 821

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                +++L VHDE++ E P+ +      +   +M +       +PLK +    K +
Sbjct: 822 ENLQANVLLQVHDELILEAPENEIDKLKEIVPDVMENTVE--LDVPLKVDYSFGKSW 876


>gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
 gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1]
          Length = 878

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 89/655 (13%), Positives = 195/655 (29%), Gaps = 125/655 (19%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           ++ FA    +     +      +   +    LE+        +       LK    + + 
Sbjct: 334 ILGFAIA--NEHGNFFIRTDTALSSSLFTTWLEDESKKKSVFDGKRAIVSLKWQ-GVHLR 390

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             +    L+ +       + + V    K       +  E +  + KG   +   ++    
Sbjct: 391 GIQ-FDLLIASYLLNPSQSTEDVASIAKTKQYAGVQSDEAV--YGKGAKQKVPDEQVLAE 447

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           H           +       +  ++    +  E  L  +   +   G  VDV     + +
Sbjct: 448 HLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVERLKEMGE 507

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
            +  +  +++QE+  L      +    ++L   LF +  L +   T+   +T   VL   
Sbjct: 508 ELAEQLKEVEQEIYRLAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSAEVLEKL 566

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                   ++ + R    +     +  L++ ++ D     T+     ++TGR S      
Sbjct: 567 APQHEIVEKILHYRQ-LGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLSSTEPNL 625

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIE 385
           QN+P       +                         +R   I       +  AD + IE
Sbjct: 626 QNIPIRLEEGRK-------------------------IRQAFIPSEPDWVIFSADYSQIE 660

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA +A ++  + AF  G D++  T    F+V+  +VT + R   K +   + Y    
Sbjct: 661 LRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGIS- 719

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                   +  LN+             E +   + + + + +   +              
Sbjct: 720 ----DYGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEAKQKGYVTTL------- 768

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                                               +RR +P +  +             
Sbjct: 769 ----------------------------------LHRRRYLPDITSRNFNLRSF------ 788

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
                      R+ +NT                   +Q  + DI+ + M++ +K      
Sbjct: 789 ---------AERTAMNT------------------PIQGSAADIIKKAMIDLSKRLQKEN 821

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               ++L VHDE++ E P  +      +   +M +       +PLK + +    +
Sbjct: 822 MKARMLLQVHDELILEAPKDEIERLQQIVPEVMENAVQ--LRVPLKVDYHFGPTW 874


>gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7]
 gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
 gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3]
          Length = 879

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 92/691 (13%), Positives = 194/691 (28%), Gaps = 140/691 (20%)

Query: 6   IDFETR---------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-- 54
           ID ET          SP  L    I     +  ++ F+   ++  +              
Sbjct: 302 IDVETVEEITEDMLVSPSALVVEQIGDNYHEEPILGFSI-VNETGLYYIP---KETAIQS 357

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
           +  K   E+        +S   R+V+      +++        L+ A      ++   V 
Sbjct: 358 EAFKSWAEDESKKKWVFDSK--RSVVALRWQGIELKGTE-FDALLAAYIINPGNSYDDVA 414

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              K     +    +  A + KG  H    ++   +H           +  +    +   
Sbjct: 415 SVAK--EYGLNIVSKDEAVYGKGAKHAVPAEKELADHLARKAAAVNSLRDKLLHALKENN 472

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +LE     E  L  +   +   G  VDV     + + +  +  + ++++  +      + 
Sbjct: 473 QLELYEDLELPLALILGEMESMGVKVDVERLKRMGEELRAKLKEYEEKIHDIAG-EPFNI 531

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF + GL +   T+   +T   VL            +   R    +     
Sbjct: 532 NSPKQLGVILFDKLGLPVVKKTKTGYSTSADVLEKLADKHDIVAYILQYRQ-IGKLQSTY 590

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++    D     T      ++TGR S      QN+P       +            
Sbjct: 591 IEGLLKVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRK------------ 638

Query: 351 TSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   +       +  AD + IE RVLA ++ ++  ++AF    D++
Sbjct: 639 -------------IRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIH 685

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T    F+V+  +VT+  R   K +                    G++    +      
Sbjct: 686 TKTAMDVFHVSEDEVTQAMRRQAKAVNF--------------GIVYGISDYGLSQ----- 726

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                   + +    V        ++ +
Sbjct: 727 -------------------------NLGITRKEAGAFIDRYLESFPGVKAYM---EESVQ 758

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +  + G      +                       R     ++ +             R
Sbjct: 759 EAKQKGYVTTLMQ-----------------------RRRYIPELTSRNF---NLRSFAER 792

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+ + M++             ++L VHDE++ E P  +   
Sbjct: 793 TAMNTP------IQGSAADIIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIKI 846

Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              L   +M         +PLKA+      +
Sbjct: 847 LEKLVPEVMEHALD--LDVPLKADYASGPSW 875


>gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405]
 gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360]
 gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313]
          Length = 894

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 87/663 (13%), Positives = 185/663 (27%), Gaps = 131/663 (19%)

Query: 29  CVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
            +   A    +      D  +   +    +  K+ LE+ ++    H+      V      
Sbjct: 341 KLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLKN-FIVYLNNRG 399

Query: 86  LDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
           +D        T++ A           +  + +     S K  E  EL  +       + +
Sbjct: 400 IDFNGLA-FDTMIGAYIINPSKETYTISELAQEYLNLSVKAVE--ELAGKGKSFTLFKDM 456

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                      +          +    +   +       E  L      +   G+ V+V 
Sbjct: 457 QPDVLSKTVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADMEYYGFKVNVD 516

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
                ++ +  +   + +E+ +L      +    ++L   LF + GL +   T+   +T 
Sbjct: 517 ALVEFSKELQEKIDVVTKEIYTLAG-EEFNINSPKQLGVILFEKLGLPIIKKTKTGYSTD 575

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGR 318
             VL           ++   R    +        L+  +N   G++  +      + TGR
Sbjct: 576 AEVLEELSDRHEIVEKILEYRQ-LVKLKSTYAEGLLAVINPYTGKIHSSFNQ-TVTATGR 633

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377
            S      QN+P       +                         +R   I   E   L+
Sbjct: 634 ISSTEPNLQNIPIKLEMGRK-------------------------IRKVFIPSDENYLLL 668

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +  ++  + AF   ED++ +T A  F +   +VT   R+  K +  
Sbjct: 669 DADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNF 728

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            +                G+   +                               A +  
Sbjct: 729 GIV--------------YGIGDFSL------------------------------AKDLK 744

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                       +  ++  V +  +++ +  ++                           
Sbjct: 745 ISRKEARAYIDGYLDRYPNVKKYMHDIVEEGKE--------------------------K 778

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
             +     R     ++ +             R            +Q  + DI+   M+  
Sbjct: 779 GFVTTMFMRRRYLPELKSRNF---NIRSFGERVAMNTP------IQGSAADIIKIAMVKV 829

Query: 618 T------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYES 670
                  K    ++L VHDE++ ET   ++     +    M +  S    +PL  E    
Sbjct: 830 HGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILLEGMQNAVS--LKVPLVVEIKSG 887

Query: 671 KRY 673
             +
Sbjct: 888 SNW 890


>gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
 gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10]
          Length = 886

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 90/690 (13%), Positives = 183/690 (26%), Gaps = 161/690 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKEALENTDVT 67
           ET                   VI  A   ++    L +D +      + ++  L ++++ 
Sbjct: 329 ETHGDNP----------HHADVIGLALATEERQYFLPFDVLKSEEA-EPVRAWLADSEIP 377

Query: 68  IVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQ 121
                  ++   +        +           + A       +   L  +     L   
Sbjct: 378 KRG----YDLHRIDLALHWQGIAFAGAA-FDVHLAAYLLDPTESNQTLSGLASKYGL--- 429

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-------TVTREIFKR 174
                    A     E       + K    E            V              + 
Sbjct: 430 ---------AYLQADEDVFGKGAKYKVPDVEKLSEHMARKCLAVSELVPIQEKELAANEM 480

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           L      E  L  +   +  +G  V+      L +  + +  KL QE+  +      +  
Sbjct: 481 LPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIAGT-EFNLN 539

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF++  L +   T+   +T   VL            +   R   ++     +
Sbjct: 540 SPKQLGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPYHDIVRLILQYR-TLAKLQSTYV 598

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++ ++S      T      + TGR S      QN+P       +L            
Sbjct: 599 EGLLKEISSVTGKVHTYYRQTIAATGRLSSQYPNLQNIPIRLEEGRKL------------ 646

Query: 352 SDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        R   +    G  ++ AD + IE RVLA ++ ++   +AF    D++ 
Sbjct: 647 -------------RKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHDMDIHT 693

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F V   +V  + R   K +   +                G++    +       
Sbjct: 694 KTAMDVFGVGMDEVDSNMRRSAKAVNFGIV--------------YGISDYGLSQ------ 733

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                                  + +    V    + + +  +Q
Sbjct: 734 ------------------------NLNITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQ 769

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                                     +  +     R     ++  +            R 
Sbjct: 770 --------------------------DGYVKTLLERRRYLPEINASNF---NLRSFAERT 800

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M++  KA         ++L VHDE+V E P+ +    
Sbjct: 801 AMNTP------IQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVM 854

Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             L   +M+        +PLK+E    + +
Sbjct: 855 KELVPDVMSQALK--LSVPLKSEVSYGENW 882


>gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20]
 gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20]
          Length = 894

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 97/670 (14%), Positives = 195/670 (29%), Gaps = 145/670 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
            +   A    +      D  +   +    +  K+ LE+ ++    H+      V      
Sbjct: 341 KLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLKN-FIVYLNNRG 399

Query: 86  LDIPIHRWICTLVLARSNGLP---SALKAVG-EALKLSSQKMEEGKELIARFCKGETHEC 141
           +D        T++ A           +  +  E L LS       K +     KG++   
Sbjct: 400 IDFNGLA-FDTMIGAYIINPSKETYTISELAQEYLNLS------VKAVEKLAGKGKSFTL 452

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDR 195
             D          +  G Y      V+R+I   L+  +        E  L      +   
Sbjct: 453 FKDMQPD---VLSKTVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADMEYY 509

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G+ V+V      ++ +  +   + +E+ +L      +    ++L   LF + GL +   T
Sbjct: 510 GFKVNVDALVEFSKELQEKIDVVTKEIYTLAG-EEFNINSPKQLGVILFEKLGLPIIKKT 568

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFL 311
           +   +T   VL           ++   R    +        L+  +N   G++  +    
Sbjct: 569 KTGYSTDAEVLEELSDRHEIVEKILEYRQ-LVKLKSTYAEGLLAVINPYTGKIHSSFNQ- 626

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA- 370
             + TGR S      QN+P                             +S  +R   I  
Sbjct: 627 TVTATGRISSTEPNLQNIPIKLE-------------------------MSRKIRKVFIPS 661

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            E   L+ AD + IE RVLA +  ++  + AF   ED++ +T A  F +   +VT   R+
Sbjct: 662 DENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRS 721

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   +                G+   +                             
Sbjct: 722 RAKAVNFGIV--------------YGIGDFSL---------------------------- 739

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
             A +              +  ++  V +  +++ +  ++                    
Sbjct: 740 --AKDLKISRKEARAYIDGYLDRYPNVKKYMHDIVEEGKE-------------------- 777

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                    +     R     ++ +             R            +Q  + DI+
Sbjct: 778 ------KGFVTTMFMRRRYLPELKSRNF---NIRSFGERVAMNTP------IQGSAADII 822

Query: 611 AEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
              M+         K    ++L VHDE++ ET   ++     +    M +  S    +PL
Sbjct: 823 KIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILLEGMQNAVS--LKVPL 880

Query: 664 KAEGYESKRY 673
             E      +
Sbjct: 881 VVEIKSGSNW 890


>gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803]
 gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803]
          Length = 942

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 101/696 (14%), Positives = 204/696 (29%), Gaps = 150/696 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
            ++  D ET S   L          D  ++  AF ++           +      + + L
Sbjct: 369 KSVCFDTETTSLNTL----------DAELVGIAFSWEAGKGFYLPFPEEKKEAQKLIEEL 418

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGE- 114
           +   EN  +  +  N  ++  VL     +D+       T++            +  + E 
Sbjct: 419 RNFFENDKIEKIGQNLKYDIKVLDKY-KIDVK-GALFDTMIAHYLINPDMRHNMDVLAET 476

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L  + Q + E   LI +                    A     EY   D  +T ++   
Sbjct: 477 YLNYTPQPISE---LIGK---------KGKNQGSMRDVALDKQTEYAVEDADITFQLKNL 524

Query: 175 LEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            E    + +           L  +   +   G  +D     +L++ +  +   L+ ++  
Sbjct: 525 FEKELEEAETRKLFNEIEIPLVEVLADMELEGIKLDEEYLKSLSEALASDIKDLETKIYE 584

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNN 279
                       ++L   LF +  L      T+    +T + VLSS  +       V + 
Sbjct: 585 AAG-EEFLISSPKQLGIILFEKMELSKKPKKTKTGQYSTSEDVLSSLAEENDIVQHVLDY 643

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    +     ++ L   +        T      + TGR S      QN+P  +   +  
Sbjct: 644 R-GLVKLQNTYVDALPNQVERTTGRVHTDYVQTTAATGRLSSNNPNLQNIPIRTERGK-- 700

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                                   VR   +   E   L+ AD + IE R++A ++ E+  
Sbjct: 701 -----------------------QVRKAFVPRDENYVLLAADYSQIELRIIAALSNEENM 737

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF+ GED++ +T A+ FNV   +VT++QR+  K +   + Y   A        +   +
Sbjct: 738 IQAFKDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSA-----FGLSNQTS 792

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           L+        ++  + +    NF     E   E+      +G    R  K    +++ V 
Sbjct: 793 LSRSESKELIDTYYKTYPKLSNFIADQVEFARENGHVSTVLGR--RRYLKDINSRNAIVR 850

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +        G A                              L   ++     
Sbjct: 851 G---AAERNAVNAPIQGSAADII-------------------------KLAMINIHKKLK 882

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
             N  T+                            ++                +V +   
Sbjct: 883 EENYKTKM---------------------------LLQVHDE-----------LVFDAHK 904

Query: 639 TDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +       +   M +   +   +PL  +    K +
Sbjct: 905 DELEKVQKMIKSEMENA--YKLEVPLDVDLGVGKNW 938


>gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
 gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1]
          Length = 898

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 104/708 (14%), Positives = 203/708 (28%), Gaps = 179/708 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           +  D ET                   ++ F+F   +         H              
Sbjct: 330 VAFDTETTGLD----------TRTDKMVGFSFCTSNEKAYYVPVGHSYLGVEEQVDPEDA 379

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111
              LK+ +      IV  N  F+ ++L   + ++  +  +  T+++A      S   L +
Sbjct: 380 VAALKKLM---KQKIVGQNLKFDLSLLYNQYGME-EVLPFADTMIMAWLTDPGSRVGLDS 435

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +  K     M+  KE++              + +            Y   D  +T  +
Sbjct: 436 LAQ--KFFKYDMKPFKEMVK-------------KGENFSHVNIADATFYAAEDAWMTFLL 480

Query: 172 F-------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +               L+     E     +   +   G  VD     TL + +  +  +L
Sbjct: 481 YGAIKKKMELSSLTHLLKEAKDVEYPFINVLIRMERLGIKVDQVKLETLKKTLSEDLHRL 540

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275
             E+  L+     + R  ++L   LF   GL     T+   +T + VL S K   P   +
Sbjct: 541 TSEIHELSGS-EFNIRSTQQLGVVLFQHLGLKGGKKTKTGYSTNEAVLQSLKHEHPVIGK 599

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           +   R    +     +  L++    D   R+  +    G + TGR S      QN+P  S
Sbjct: 600 ILEYR-EYHKMLSTYVEPLLKLAKKDEKSRIYTSFIQTG-TATGRLSSKDPNLQNIPVRS 657

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                     +   VR   +A EG KLV  D + IE R+LA  +
Sbjct: 658 -------------------------TLGRSVREAFVAKEGYKLVSIDYSQIELRLLAHFS 692

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   ++AF  G D+++ T  + F     +  K +R   K +                  
Sbjct: 693 KDAALMEAFNKGTDIHMATAVKLFG---EEEAKAKRNFAKSVNF--------------GL 735

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+                                 + + E        + +   +   
Sbjct: 736 LYGMGP------------------------------KKLSDELGITSAEAKEIIANYFAS 765

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              V      + +  +  I+     + ++RR                         Y + 
Sbjct: 766 FPTVKNFLEGIQERVK--IDGYVETLLKRRRIFD----------------------YENA 801

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLT 627
              +               Y  +    + Q  + D++   M +             ++L 
Sbjct: 802 NGMQK------------AAYMRESVNTVFQGSAADLIKLSMNDIDSMIIDEALEAHMLLQ 849

Query: 628 VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +HDE++ E  +           H+M     W   +PL         + 
Sbjct: 850 IHDELIFEIREDQVEKISKRFVHVMEHI--WELEVPLVCSVSVGDSWG 895


>gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
 gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS]
          Length = 903

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 107/679 (15%), Positives = 204/679 (30%), Gaps = 134/679 (19%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELW------DCVHDPVMPQV----LKEALENTD 65
           L   G  + A D  +   A                       +        L   L +  
Sbjct: 336 LAVSGTPEEAMDARLTALALSSAAGDACFVLAEFIGSASEGQMFATEGHSGLAALLGDKK 395

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
           ++  AHN+ +   +L +    ++       T++ A   G     K +     +      E
Sbjct: 396 MSKTAHNAKYLMNLLLSA-GQEVKGLD-FDTMIAAHLLGE----KNLAIKDLVFEHFGIE 449

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
             ++     +        +       +    +    KG         + ++  +  E  L
Sbjct: 450 IADIENILTRNGKKTIFNEVQLSEAAQLAADYTFRLKGIFAAQLAETRLMDLFARVEMPL 509

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   +   G  +D  L   + +    +  KL++++ +       +    ++L   LF 
Sbjct: 510 LPILLGMERIGIMLDTDLLKAMAEKTGRQIFKLEEDIYAQAGHS-FNIGSPQQLGRILFD 568

Query: 246 ETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           E  L +   T+   +T   VL   +        +   R    +     L+TL   +N   
Sbjct: 569 ELKLPVIKKTKTGYSTGAEVLEELQGKHRIVDLILEYR-MLVKLKSTYLDTLPRMVNPHT 627

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           R   T      + TGR S      QN+P       E                        
Sbjct: 628 RRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEMGRE------------------------ 663

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   IA  G  L+  D + I+ RVLA ++ +   ++AF++ +D++  T AR  NV+P+
Sbjct: 664 -IRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNVSPS 722

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VTK+QR + K +   +                G++        +               
Sbjct: 723 KVTKEQRRLAKTVNFGVI--------------YGMSSYGLEQATE--------------- 753

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                ++  KA+ +K+ RV+  + E+ Q                
Sbjct: 754 ---------------LSLEEADKFIKAYFEKYPRVAVYFAEIKQQART------------ 786

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR     ++ +             R            V
Sbjct: 787 --------------QGYVETLLGRRRYIPEINSPN---RILRESAERMAINMP------V 823

Query: 603 QAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655
           Q  S DI+   M+         K    ++L VHDE++ E P  +      +L   M+   
Sbjct: 824 QGTSADIIKLAMVRLDEKIKEEKLKSRLLLQVHDELIFEVPTAELGRMSDLLIETMSGAV 883

Query: 656 SWAKGLPLKAEGYESKRYR 674
             A  +PLK E      + 
Sbjct: 884 --AFEIPLKVELKSGANWG 900


>gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
 gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5]
          Length = 886

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 89/690 (12%), Positives = 183/690 (26%), Gaps = 161/690 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKEALENTDVT 67
           ET                   VI  A   ++    L +D +      + ++  L ++++ 
Sbjct: 329 ETHGDNP----------HHADVIGLALATEERQYFLPFDVLKSEEA-EPVRAWLADSEIP 377

Query: 68  IVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQ 121
                  ++   +        +           + A       +   L  +     L   
Sbjct: 378 KRG----YDLHRIDLALHWQGIAFAGAA-FDVHLAAYLLDPTESNQTLSGLASKYGL--- 429

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-------TVTREIFKR 174
                    A     E       + K    +            V              + 
Sbjct: 430 ---------AYLQADEDVFGKGAKYKVPDVDKLSEHMARKCLAVSELVPIQEKELAANEM 480

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           L      E  L  +   +  +G  V+      L +  + +  KL QE+  +      +  
Sbjct: 481 LPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIAGT-EFNLN 539

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF++  L +   T+   +T   VL            +   R   ++     +
Sbjct: 540 SPKQLGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPYHDIVRLILQYR-TLAKLQSTYV 598

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++ ++S      T      + TGR S      QN+P       +L            
Sbjct: 599 EGLLKEISSVTGKVHTYYRQTIAATGRLSSQYPNLQNIPIRLEEGRKL------------ 646

Query: 352 SDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        R   +    G  ++ AD + IE RVLA ++ ++   +AF    D++ 
Sbjct: 647 -------------RKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHDMDIHT 693

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F V   +V  + R   K +   +                G++    +       
Sbjct: 694 KTAMDVFGVGMDEVDSNMRRSAKAVNFGIV--------------YGISDYGLSQ------ 733

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                                  + +    V    + + +  +Q
Sbjct: 734 ------------------------NLNITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQ 769

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                                     +  +     R     ++  +            R 
Sbjct: 770 --------------------------DGYVKTLLERRRYLPEINASNF---NLRSFAERT 800

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M++  KA         ++L VHDE+V E P+ +    
Sbjct: 801 AMNTP------IQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVM 854

Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             L   +M+        +PLK+E    + +
Sbjct: 855 KELVPDVMSQALK--LSVPLKSEVSYGENW 882


>gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
 gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681]
          Length = 884

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 93/684 (13%), Positives = 178/684 (26%), Gaps = 149/684 (21%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LWDCVHDPVMPQVLKEALENTDVT 67
           ET                   ++   F           D +        ++  L + +  
Sbjct: 327 ETHGDNP----------HHADIVGLIFAATGQQFFMTLDVLQSDAAT-PIRAWLADPERK 375

Query: 68  IVAHNSYFERT----VLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSS 120
              H    +       L     ++          +             L  +     LSS
Sbjct: 376 KRGH----DLHRTDLALHWH-GIEFAGAE-FDVQLAGYLLDPTDANQTLSGLAAKYGLSS 429

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            + +E       F KG  ++        +H        E          E  +  +    
Sbjct: 430 IRPDE-----EVFGKGAKYKVPDVDVLSDHVARKAAVIEALVPVQQAELEKTEMHKLFHE 484

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L  +   +  +G  V+V     L +  + +   L  E+ S+      +    ++L 
Sbjct: 485 LEMPLSRILADMEKQGVLVNVEELRALGKEFEAQIATLVSEIYSIAGV-EFNLNSPKQLG 543

Query: 241 TWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL +   T+   +T   VL            +   R   ++     +  L++ 
Sbjct: 544 EILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHDIVQNILQYR-TIAKLQSTYVEGLLKE 602

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           ++       T      + TGR S      QN+P       +                   
Sbjct: 603 ISGKTGKVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRK------------------- 643

Query: 358 QIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R   +    G  ++ AD + IE RVLA ++ ++   +AF    D++  T +  
Sbjct: 644 ------IRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDV 697

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F VA   V  + R   K +                    G++    +             
Sbjct: 698 FGVAAEDVDSNMRRSAKAVNF--------------GIVYGISDYGLSQ------------ 731

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                                       R    +      V    +++    +    +G 
Sbjct: 732 ------------------NLNITRKEAARFIDQYFDVFQGVRRYMDDI---VKDAKRDGY 770

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                +                       R     ++  +            R       
Sbjct: 771 VKTLLE-----------------------RRRYLPEINASNF---NLRSFAERTAMNTP- 803

Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY-H 649
                +Q  + DI+   M+   K          ++L VHDE+V E P  +      L   
Sbjct: 804 -----IQGTAADIIKLAMVQMDKVLRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPA 858

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
            M +    A  +PLKAE      +
Sbjct: 859 TMEAALELA--VPLKAEVSYGSNW 880


>gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
 gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294]
          Length = 907

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 99/708 (13%), Positives = 201/708 (28%), Gaps = 177/708 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPV 52
            +  D ET     +          +  ++ F+F F+D         H            V
Sbjct: 338 IVAFDTETTGLDYI----------NNKLVGFSFSFNDEEAYYVPFGHFYLGVADQVSKDV 387

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110
             Q ++    +    +V HN  F+   +         +  +  +++LA         +L 
Sbjct: 388 AKQAMRRIFNSK---VVGHNIKFDLHFVTRFLEEK-DLPVYCDSMILAWLINPESALSLD 443

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + + L         G E++              + +            Y   D  +TR+
Sbjct: 444 KLSDKL--------LGHEMVHFKD-------TVKKGENFSTVELDDACVYAAEDAFITRK 488

Query: 171 IF-------------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           ++               +E   + E    +    + + G  VD          V      
Sbjct: 489 LYKLFLKKLELQDATHLIEEAKTVEIPFMHTLLKMEEEGIEVDTGFLEKFLVEVKETLEY 548

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274
           L + +  L      +    ++L   LF + GL +   T+   +T ++VLSS K   P   
Sbjct: 549 LTKSIYELAGS-EFNINSTQQLGNILFEKLGLPVGKKTKTGYSTNEKVLSSLKDKHPIIP 607

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPS 333
           ++   R    +     ++ L++  N D + R    F    + TGR S      QN+P  +
Sbjct: 608 KLLEYR-EVHKLYSTYIDPLLKLANEDEQHRIHTSFVQTGTATGRLSSKNPNLQNIPTRT 666

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                     +   +R   +A EGKK +  D + +E R+LA  +
Sbjct: 667 P-------------------------LGAKIRRGFVAGEGKKFIGIDYSQMELRLLAHFS 701

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF   +D+++ T    F     +    +R I K +   L Y  G         
Sbjct: 702 QDPVLVNAFMHDKDIHLQTAIVLFG---EEEAAHKRNIAKTVNFGLLYGMGP-------- 750

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                                                + +          + + + + + 
Sbjct: 751 ------------------------------------KKLSDTLGITTKEAKEIIEKYFES 774

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              V   +  + ++ ++                             +    GR   +   
Sbjct: 775 FHTVKAYFRSIVESSKE--------------------------KGYVETLLGRRRYFDYE 808

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLT 627
                Y             Y  +   ++ Q    D++   M          K    ++L 
Sbjct: 809 NATPMYR----------AAYERESVNSVFQGSVSDVIKLSMNKIHTIINEEKLQAKMLLQ 858

Query: 628 VHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           +HDE++ E  +            +M         +PLKA       + 
Sbjct: 859 IHDELIFEVDEKVADELGNRFRDIMDHIVE--LNIPLKASLNIGDNWG 904


>gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125]
 gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125]
          Length = 876

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 90/660 (13%), Positives = 191/660 (28%), Gaps = 127/660 (19%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACF 84
               ++  A   ++          D  +  + L + L++        ++      L    
Sbjct: 328 HQGDILGLAIAHNNG-CYYIPT--DEALRSEALIQWLKDERKEKWLFDAKRAVVALGW-K 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           N+++         + +      ++   V +  K    +     E  A + KG       +
Sbjct: 384 NIELA-GSTFDLQMASYLLDPSTSFHEVSDVTKH--HRKGHVHEDEAVYGKGAKRRIPDE 440

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           +    H           K  V    +  ++L   +  E  L  +   +   G  VDV   
Sbjct: 441 KELGEHLARKADAIFQLKEHVEEKLKENEQLGLFNELEMPLSVILGRMETTGVKVDVEQL 500

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + ++    +L+Q +  L      +    ++L   LF +  L +   T+   +T   
Sbjct: 501 EQMGEDLNARLEELEQTIHELAGVS-FNINSPKQLGEILFEKLQLPVIKKTKTGYSTSAD 559

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     ++ L++ ++       T      ++TGR S 
Sbjct: 560 VLEKLAGQHEIIDHILHYRQ-LGKLNSTYIDGLLKVVHKGTGKVHTRFNQALTQTGRLSS 618

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVAD 380
                QN+P       +                         +R   + SE    ++ AD
Sbjct: 619 TDPNLQNIPIRLEEGRK-------------------------IRKAFVPSEKDWFILAAD 653

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA  A ++  ++AF    D++  T    F+V+  +VT + R   K +   + 
Sbjct: 654 YSQIELRVLAHFAEDEKLMEAFREDMDVHTKTAMDVFHVSQEEVTSNMRRSAKAVNFGIV 713

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +               +   + +   + +   E         
Sbjct: 714 YGIS-----DYGLSQNLGITRKEAATFIERYFASYPKVKEYLDHVIDEAREKGYVTTL-- 766

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                   ++RR +P +  +        
Sbjct: 767 ---------------------------------------LKRRRYLPDLTSRNFNQRSF- 786

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA--- 617
                           R+ +NT                   +Q  + DI+ + M+     
Sbjct: 787 --------------AERTAMNT------------------PIQGTAADIIKQAMVQMASR 814

Query: 618 ---TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                    ++L VHDE++ E P  +      L   +M         +PLK +      +
Sbjct: 815 MDEEDLQSRLLLQVHDELIFEVPKEEVAQMKELVTSVMEQAVE--LRVPLKVDVACGDTW 872


>gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
 gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430]
          Length = 889

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 100/700 (14%), Positives = 202/700 (28%), Gaps = 166/700 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVL 57
            +  D ET +   L             ++ F+F  D          H        + + L
Sbjct: 324 IVSFDTETTNLDVLC----------AKIVGFSFSLDGINAYYAPIAHSYLGVPEQISKEL 373

Query: 58  KEALENT---DVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARSN--GLPSALKA 111
                N+      ++ HN  ++  +L   FN      H    +++LA      +P  L  
Sbjct: 374 ALEFINSLFNAKVVIGHNLKYDLEILHTNFNFTPKSYHNIKDSMLLAWLYQSDMPCNLDD 433

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +          M   K++I              + +   +        Y   D     ++
Sbjct: 434 LMARY--FKHTMIAFKDIIK-------------KGENFSQLPIENAFTYACEDAAACYQL 478

Query: 172 FKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           F ++  L  K                   +   G  +++     L   +  +   L QE+
Sbjct: 479 FFKINSLLPKSLQEVANNVEFPFIQCLVNMELSGTKINIKYFKNLKSEMTEKLQALSQEI 538

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279
            +L      +    ++L   LF E  L     T++   T   VL+S +   P   +V   
Sbjct: 539 YTL-ANKRFNLNSPQQLSIVLFEELNLQSGKKTKSGLSTNSSVLNSLRDSHPIIPKVLEY 597

Query: 280 RMRASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           R    +     +  L+E    +   ++  +    G + TGR S      QN+P  ++   
Sbjct: 598 R-ELFKLYSTYIEPLIELASQDPAHKVYTSFMQTG-TSTGRLSSKNPNLQNIPVKTQQGR 655

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA EG  L+  D + IE R+LA  + +  
Sbjct: 656 R-------------------------IREGFIAQEGHLLLSLDYSQIELRLLAHFSQDSA 690

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF    D+++ T  + F     ++ +++R++ K +   L                  
Sbjct: 691 MIEAFHKEADIHLETAKKIFG---EELAQEKRSVAKSINFGLI----------------- 730

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                            + +          +   + + Q    V
Sbjct: 731 ---------------------------YGMGARKLSETLQINHQEAKSYIQNYFQSFPTV 763

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                E  +   +        +  + R      +++ +    L                 
Sbjct: 764 KNFLKEQEEFILK--NGYSLTLLGRMRKFSFENIQEFQKVAFLR---------------- 805

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA--TKAGYDIVLTVHDEIVCE 635
                             +    I Q  + DI+   M+     K    ++L +HDE++ E
Sbjct: 806 ------------------EGINAIFQGSAADIIKLAMIQITQEKLESKLLLQMHDELIFE 847

Query: 636 TPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            P    E  A  +  +M S  +    +PL+        + 
Sbjct: 848 APKNIAETEAKKIAQIMESITT--LRVPLRCGVSLGANWG 885


>gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
 gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC
           43184]
          Length = 940

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 95/695 (13%), Positives = 180/695 (25%), Gaps = 148/695 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVL 57
                D ET     L             ++  +F   ++                +    
Sbjct: 367 DFFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPAAREEADKILAHF 416

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
             AL+N     +  N  F+  V++    + I       T++            +  + E 
Sbjct: 417 SPALQNPKSLKIGQNIKFDILVVRKY-GIRIA-GPLFDTMIAHYLLNPELRHGMDYLAET 474

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 K    +ELI              +             EY   D  +T ++    
Sbjct: 475 Y--LKYKTVRIEELIG---------PRERKQLTMRDVPVVQVAEYAAEDADITLKLKNYF 523

Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P              E  L Y+   +   G  +D       ++ +     KL++E+  L
Sbjct: 524 TPCLEKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTVALKQSSEELTTALKKLEKEIYEL 583

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +     ++   LF    +  +   T+    +T + +L   +   P   ++   R
Sbjct: 584 AGMK-FNINSARQVGEVLFDHLKIEEKARKTKTGSYSTSEEILEKMRSKHPVVGKLLEYR 642

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L E +N +     T      + TGR S      QN+P       E  
Sbjct: 643 -GLKKLLSTYIDALPELINPETGKIHTSYNQAVTSTGRLSSTNPNLQNIPVRDELGRE-- 699

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  +R    A  E      AD + IE R++A ++ +   +
Sbjct: 700 -----------------------IRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMI 736

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF +G D++  T A+ + +   +VT D R   K     + Y               L++
Sbjct: 737 EAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERLSI 791

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                        + + D   +     E   E    +       +R        ++ V  
Sbjct: 792 PRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKR--KRFLPDINSHNAIVRG 849

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A    K   V +    + +      L S   L   D  N   Y
Sbjct: 850 Y---AERNAINAPIQGSAADIIKVAMVRIFNRFETEG-----LKSKMILQVHDELNFNVY 901

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                                                             DE+       
Sbjct: 902 K-------------------------------------------------DEL------- 905

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                  +    M +       +PL A+  E   +
Sbjct: 906 --EKVKQIVLDEMENAIK--LQVPLIADCGEGVNW 936


>gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
 gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299]
          Length = 900

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 104/705 (14%), Positives = 211/705 (29%), Gaps = 173/705 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVM-PQV 56
            +  D ET S             +   ++ F+F F+++        H        +  + 
Sbjct: 333 IVAFDTETTSLD----------TKIAKIVGFSFCFNENSAYYIPIAHSYLGAPEQVSIED 382

Query: 57  LKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113
            K A+    +  ++  N  ++  ++K  FN DI ++ +  T++LA      S   L A+ 
Sbjct: 383 AKSAINKLNNFKLIVQNFKYDFDIIK--FNFDIELNLFADTIILAWLLDSSSKVGLDALA 440

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +        M   K+++ +                           Y   D  +T +I+ 
Sbjct: 441 K--NYFDHTMIAFKDVVKKGD-------------DFSTVDISNACNYAAEDALMTYKIYF 485

Query: 174 RLEPL-------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +L                +  E +   +   + + G  +D  +   L         +L +
Sbjct: 486 KLLEEFKKQNCEHLLKIANDYEFKFIDVLINMQNNGVKIDTQILKNLKIQNQEYIQELTK 545

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           ++  L      +    ++L   LF   GL      +   +T + VL+           + 
Sbjct: 546 KIHELAGTK-FNINSPKQLGVILFENLGLTASKKGKTGYSTNEVVLNKLVDSHEIIPVIL 604

Query: 278 NNRMRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           + R  A +     +  L+E  ++D   ++  +    G + TGR S      QN+P  S +
Sbjct: 605 DYR-EAYKLQSTYIEPLLELASNDSENKIYTSFLQTG-TATGRLSSKNPNLQNIPVKSSA 662

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             E                         +R   IA +G KLV  D + IE R+LA  + +
Sbjct: 663 GRE-------------------------IRKAFIARDGYKLVGIDYSQIELRLLAHFSKD 697

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  + AF +  D++  T  + F     +    +R I K +   L                
Sbjct: 698 KALVDAFNSDLDIHSQTAVKIFG---EEKASQKRNIAKTINFGLL--------------- 739

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                              + A          +    ++ +  +
Sbjct: 740 -----------------------------YGMGSKKLADTLKITPKEAKVYIDSYFEAFT 770

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V E    +       +ENG      KRR +                         D   
Sbjct: 771 NVKEYMKSIEDFA---LENGYVETLIKRRRIF------------------------DFNA 803

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHD 630
             +              Y  +      Q  + D++   M+             ++L +HD
Sbjct: 804 ANTMQRIG---------YLREAVNTKFQGSAADLIKLSMIKIFEKYKNNEDLKMILQIHD 854

Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E++ E  +  +   +  L  +M +  +    +PLK        + 
Sbjct: 855 ELIFEVKNEKQDEITNDLKKIMENIFT--LEIPLKVSVAVGNSWG 897


>gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus]
          Length = 878

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 88/649 (13%), Positives = 187/649 (28%), Gaps = 127/649 (19%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLK-EALENTDVTIVAHNSYFERTVLKACFNLDI 88
           ++ FA   +           D  +   L    LE+        +       LK    +++
Sbjct: 334 ILGFALANEHGHFF---IRTDTALSSPLFTAWLEDETKKKSVFDGKRAIVALKW-KGIEL 389

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                   L+ +       + + V    K       +  E +  + KG       ++   
Sbjct: 390 RGIE-FDLLIASYLLNPSQSTEDVASVAKTKQYMAVQSDEAV--YGKGAKQTVPEEKALA 446

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            H           + +     +  ++    +  E  L  +   +   G  VDV     + 
Sbjct: 447 EHLVRKAAAIRALEKEFIHDLQENEQYALFTDLELPLSSILAEMEFTGVKVDVERLKEMG 506

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
           + +  +   ++QE+  L      +    ++L   LF +  L +   T+   +T   VL  
Sbjct: 507 EELTEQLRAVEQEIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEK 565

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                    ++ + R    +     +  L++ ++ D     T+     ++TGR S     
Sbjct: 566 LAPQHEIVEKILHYRQ-LGKLQSTYIEGLLKVVHCDTHKVHTIFNQALTQTGRLSSTEPN 624

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGI 384
            QN+P       +                         +R   +       +  AD + I
Sbjct: 625 LQNIPIRLEEGRK-------------------------IRQAFVPSKPDWVIFSADYSQI 659

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA +A ++  + AF    D++  T    F+V   +VT + R   K +   + Y   
Sbjct: 660 ELRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVTADEVTPNMRRQAKAVNFGIVYGIS 719

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                    +  LN+             E +   + +   + +   +             
Sbjct: 720 -----DYGLSQNLNIPRKEAAEFIRRYFEIFPGVKQYMENIVQEAKQKGYVTTL------ 768

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                                                +RR +P +  +            
Sbjct: 769 -----------------------------------LHRRRYLPDITSRNFNLRSF----- 788

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618
                       R+ +NT                   +Q  + DI+ + M++        
Sbjct: 789 ----------AERTAMNT------------------PIQGSAADIIKKAMIDLADRLKQE 820

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           K    ++L VHDE++ E P  +      +   +M +       +PL  +
Sbjct: 821 KLQARMLLQVHDELILEAPKEEVKRLQQIVPEVMENAIQ--LKVPLLID 867


>gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
 gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406]
          Length = 937

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 112/695 (16%), Positives = 210/695 (30%), Gaps = 150/695 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----PVMPQVL 57
                D ET     LT            +++ +F  ++          D      + Q L
Sbjct: 366 KQFAFDTETDGLNPLT----------ASIVVASFAPEEGEAYYLPLPQDFDEACAILQPL 415

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
              + N+++  +A N+ F++ +L     +         TLV            L  + E 
Sbjct: 416 DALMRNSEILKMAQNAKFDQKLLARY-GVS-SATPLFDTLVAHYLIAPDQRHNLDTLAEQ 473

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                     G   IA     E       R+         L  +Y   D  V R ++  L
Sbjct: 474 Y--------LGYRTIAYSDLSEKKNFDLRRDVAE-----ELLVDYAAEDADVVRRLYPLL 520

Query: 176 EPLSSKEQE---LWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                +EQ+    W ++         +   G  +DV   H +++ +  +  + +  +   
Sbjct: 521 REKLEQEQQEKLFWEVEMPLVGVLERMEREGVQLDVQRLHEVSEKLTNDLRETEDAIFHW 580

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF E GLH +   T+    +T + VLS      P   ++ + R
Sbjct: 581 AGHS-FNVSSPKQVGVVLFEELGLHAKGKKTKTNTYSTSEEVLSKCVDQHPIVQKILDYR 639

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +        L E +  DGRLR +      + TGR S      QN+P  S       
Sbjct: 640 -GLKKLIGTYTEALPELVYPDGRLRTSYNQAV-TVTGRLSSSDPNLQNIPIRSA------ 691

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                              +   +RS  +        + AD + IE R++A  + ++  +
Sbjct: 692 -------------------MGQEIRSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHLI 732

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           KAF  GED++ +T AR +NVAP +VT  QR+  K     + Y   A        +  LN+
Sbjct: 733 KAFVEGEDVHRSTAARIYNVAPEEVTPLQRSHAKTANFGIIYGISA-----YGLSQRLNI 787

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        +S  E +     +     +   +    +  +G          R     V +
Sbjct: 788 DPSEASSLISSYFENYPAVRAYMDECVQKARKLGYTETLLGRRRYLPDINSRSA--TVRQ 845

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                                        + 
Sbjct: 846 F---AERNAVNAPIQGTAADLI----------------------------------KVAM 868

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
           +    +   R                    +   M+          + VHDE+  +    
Sbjct: 869 IRIDAKMRERN-------------------MKSRMI----------MQVHDELNFDAYLP 899

Query: 640 DEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +     ++++  M         +PL+ E      +
Sbjct: 900 EVDELRALVHQEMCQAIP-NLRVPLEVEIGVGSSW 933


>gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii
           DSM 18315]
          Length = 940

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 99/694 (14%), Positives = 183/694 (26%), Gaps = 146/694 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVL 57
                D ET     +             ++  +F   ++                +    
Sbjct: 367 DFFAFDTETDGIDPMK----------AGLVGMSFAVKENEAWYVPVPAAREEADKVLAHF 416

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
             AL+N     +  N  F+  V++    + I       T++            +  + E 
Sbjct: 417 SPALQNPKSFKIGQNIKFDILVVRKY-GIRIA-GPLFDTMIAHYLLNPELRHGMDYLAET 474

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 K    +ELI              +             EY   D  +T ++    
Sbjct: 475 Y--LKYKTVRIEELIG---------PKGRKQLCMRDVPIPQVAEYAAEDADITLKLKNYF 523

Query: 176 EPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            P              E  L Y+   +   G  +D       ++ +     KL++E+  L
Sbjct: 524 APCLDKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTIALKQSSEELTTALKKLEKEIYEL 583

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE-DLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +     ++   LF    +  +   T+    +T + +L   +   P   ++   R
Sbjct: 584 AGIK-FNINSARQVGEVLFDHLKIEEKAKKTKTGSYSTSEEILEKMRSKHPVVEKLLEYR 642

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L E +N +     T      + TGR S      QN+P       E  
Sbjct: 643 -GLKKLLSTYIDALPELINPETGKIHTSYNQAVTSTGRLSSTNPNLQNIPVRDELGRE-- 699

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  +R    A  E      AD + IE R++A ++ +   +
Sbjct: 700 -----------------------IRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMI 736

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF +G D++  T A+ + +   +VT D R   K     + Y               LN+
Sbjct: 737 EAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERLNI 791

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                        + + D   +     E   E    +       +R        ++ V  
Sbjct: 792 PRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKR--KRFLPDINSHNAIVRG 849

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A    K   V +    + +      L S   L   D  N   Y
Sbjct: 850 Y---AERNAINAPIQGSAADIIKVAMVRIFNRFETEG-----LKSKMILQVHDELNFNVY 901

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                                           + M         IVL   DE        
Sbjct: 902 -------------------------------KDEMEKVK----QIVL---DE-------- 915

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                      M +       +PL A+  E   +
Sbjct: 916 -----------MENAIQ--LQVPLIADCGEGVNW 936


>gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
 gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1]
          Length = 875

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 92/652 (14%), Positives = 185/652 (28%), Gaps = 123/652 (18%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
             F   +     +      +     K  LE+        ++      LK    +++    
Sbjct: 332 VGFALVNERGHFFIPTDIALASSRFKRWLEDEQCKKSVFDAKRAIVALKWN-GIELKGVD 390

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
               L+ A       A   V    K       +  E +  + KG             H  
Sbjct: 391 -FDLLLAAYLLNPTDANGDVAAVAKTKQYTDVQSDEEV--YGKGAKQAIPPTNVLAEHLV 447

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                    K       +  ++ E L   E  L ++   +   G  VDV     + +   
Sbjct: 448 RKAKAIASLKETYIQELKRNEQFELLVHLELPLTFILAQMEFYGVKVDVDRLEQMGKEFT 507

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269
            +  +++Q +  L      +    ++L T LF +  L +   T+   +T   VL      
Sbjct: 508 AQLEQIEQRIYELAGTT-FNINSPKQLGTILFEKLQLPIVKKTKTGYSTSADVLEKLAPY 566

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                Q+ + R    +     +  L++ +  D     T+     ++TGR S      QN+
Sbjct: 567 HEIIEQILHYRQ-LGKLQSTYVEGLMKVVRKDTGKVHTIFQQALTQTGRLSSTEPNLQNI 625

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARV 388
           P       +                         +R   +  S+   +  AD + IE RV
Sbjct: 626 PIRIEEGRK-------------------------IRQAFVPSSDDWVIFAADYSQIELRV 660

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A ++  + AF    D++  T    F+V   +VT   R   K +   + Y       
Sbjct: 661 LAHIANDENLIAAFHHDLDIHTKTAMDIFHVKEDEVTAHMRRQAKAVNFGIVYGIS---- 716

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                +  L +               +   + +   + ++  +                 
Sbjct: 717 -DYGLSQNLGITRKEAAEFIERYFRSYPGVKRYMEEVVQDAKQKGYVTTL---------- 765

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                                            +RR +P +                   
Sbjct: 766 -------------------------------LHRRRYLPDITSGNFNVRSF--------- 785

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGY 622
                   R+ +NT                   +Q  + DI+ + M++        +   
Sbjct: 786 ------AERTAMNT------------------PIQGSAADIIKKAMIDLANRLHEERLQT 821

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E P  +      +   +M +  S    +PLK + +    +
Sbjct: 822 RLLLQVHDELILEAPKEEIELLKKIVPDVMENAVS--LRVPLKVDYHFGPTW 871


>gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58]
 gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58]
          Length = 928

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 106/705 (15%), Positives = 191/705 (27%), Gaps = 157/705 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---------- 52
            + +D ET    D   CG         ++  +     +        H             
Sbjct: 345 VVAVDTETDML-DCVSCG---------LVGISLAVAPNAACYIPVGHGGTDMFAERPAQL 394

Query: 53  ----MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
               +   LK  LE+  V  V  N  ++ TVL+      I +  +  T+V++       +
Sbjct: 395 DKALVLAKLKPLLEDDAVLKVGQNLKYDMTVLRRH---GIEVVPYDDTIVMSFDLEAGKS 451

Query: 109 LKAVGEALKLSSQ-KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L        +    +   G E I+     +                     EY   D  V
Sbjct: 452 LSG----HGMDEAARQHLGHECISF----KDVVGTGKNQISFAEVPLPRATEYAAEDADV 503

Query: 168 TREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           T  ++KR +   +           ++ L  +   +  +G  VD      L+         
Sbjct: 504 TLRLWKRFKARIANEGTNRVYELVDRPLVGVIAKMEHQGIKVDREALSRLSAEFTAGIAA 563

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TETTCQRVLSSNKKLTPQA 273
           L+ E+  +      +    ++L   LF + G            +T   +L   K      
Sbjct: 564 LETEIHEIAGQP-FAIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQLKAQGAPI 622

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
                   + S+      + L   +N D     T   L  ++TGR S      QN+P  +
Sbjct: 623 AAKVLEWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLTGAQTGRLSSTDPNLQNIPIRT 682

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   +A  G  ++ AD + IE R+ A MA
Sbjct: 683 EVGR-------------------------QIRHAFVAEPGHVILAADYSQIELRLAAHMA 717

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                 +AF  GED++  T  + F     +V ++ R   K +  A+ Y        +   
Sbjct: 718 DVPALKEAFAAGEDIHAATAEQLFG----EVNRETRGRAKTINFAILYGIS-----RWGL 768

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++        +   E +     +     E   E    +   G         W  +
Sbjct: 769 AGRLEISADEAQDMISRYYERFPGISIYINETIEKARERGYTETLFGRK------TWFPR 822

Query: 514 HSR-VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
               +        +A       G +    KR  V      +    L     SG  +    
Sbjct: 823 IKASIQHERQGAERAAINAPIQGTSADIIKRAMV------RMGPALEAAGLSGVRM---- 872

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                                                    ++                +
Sbjct: 873 -----------------------------------------LLQVHDE-----------L 880

Query: 633 VCETPDTDEFNASMLY-HLMTSN--PSWAKGLPLKAEGYESKRYR 674
           V E P+ D   AS +   +M +   P     +PL  E      + 
Sbjct: 881 VFEVPEGDVDAASAVVRRVMETAAEPIVTLSVPLGVEIGTGPSWG 925


>gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5]
 gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5]
          Length = 881

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 104/697 (14%), Positives = 198/697 (28%), Gaps = 162/697 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-----PVMP--- 54
            + ID ET S           +A +  ++  +              H        MP   
Sbjct: 317 VIAIDTETTSE----------HAVEADLVGISIAI-GEQAWYVPIDHAHTDTHRNMPTAD 365

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110
            Q L  AL+ +D+ +V  N  ++  VL+   ++ +P  R   T++ +           L 
Sbjct: 366 VQKLITALDRSDLLLVGQNIKYDLIVLQRH-DMALPQPRLFDTMIASYLLDANRRSHGLD 424

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +               E+IA                            Y   D  +T  
Sbjct: 425 QLAVEF--------LSHEMIAFKDVVPKGS-------TFRDVDIPTAARYAGEDAAITLA 469

Query: 171 IFKRLEPLSSKE---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           ++    P   +E           L  +   +   G  VD  +   L++       +L+++
Sbjct: 470 LYNLFAPRIEQEYHELFHAIEMPLVRVLCHMEMLGIAVDREMLGNLHESFTRRLHELEEK 529

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           +  L      +    ++L T LF + G+     T+   +T   VL +      +   V  
Sbjct: 530 IYELAG-EAFNINSPKQLATLLFEKMGIPPVKKTKTGYSTDVSVLEALAPQY-EIANVLT 587

Query: 279 NRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                S+     +N L E +N   GR+  +     A+ TGR S      QN+P  +    
Sbjct: 588 QYRMVSKLLSTYVNALSELINPWTGRIHTSFNQTVAN-TGRLSSSDPNLQNIPIRTEEGR 646

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
           E                         VR   + + G   V AD + IE R+ A ++G++ 
Sbjct: 647 E-------------------------VRKAFVPAPGFCFVAADYSQIELRIAAHLSGDES 681

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LK+F   +D++  T    F  +      + R + K +   + Y   A    +      L
Sbjct: 682 MLKSFAEEKDIHAQTADAIFGSSE----PNYRRMAKAVNFGILYGISAFKLSR-----DL 732

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +         +S    +   + +         EH       G          R+    +
Sbjct: 733 GMTPKEGQALIDSYFLRYPGVKAYIDHQIAFAREHGYAQTLYGR---------RRYLPDI 783

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
           +     + +A E+                                               
Sbjct: 784 NSRNRNIREAAER-------------------------------------------NAVN 800

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
             +  T+  + +             QA         ++              DE++ E P
Sbjct: 801 MPIQGTSADIIKIAMNRIHQQLAPYQA-------RMLLQIH-----------DELLFEVP 842

Query: 638 -DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +  E  ++ L   M S       L +         +
Sbjct: 843 FEQAEPFSAFLQEQMESAAQLKVRLTVTV--SSGNNW 877


>gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 470

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 142/525 (27%), Positives = 229/525 (43%), Gaps = 70/525 (13%)

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           + +T+++     P+   E E +++DQ INDRG  +D  L +   +  +V   +  Q  + 
Sbjct: 1   MEITQKL--ECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 58

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           LT     +     +LK WL  + G   + L++ +  ++L +    T +  Q+   R   S
Sbjct: 59  LTGLA--NPNSPLQLKDWLQQQ-GAKTDSLSKASVAQLLQT---TTGKVHQILALRQLLS 112

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +S+V K   + +AM  DGR+ G LQF GA+RTGRW+G +   QNLPR S    E  + + 
Sbjct: 113 KSSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARKLV 172

Query: 345 HLP---TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                            ++S  +R+  I S+     VAD + +EARV+AW++ E+W+ +A
Sbjct: 173 KQGNVTALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEEWRQEA 232

Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F   ED+Y  + ++ F V   +     + R  GK+ ELALGY G   A + M +T     
Sbjct: 233 FAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK---- 288

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                +        + + WR     + +
Sbjct: 289 ------------------------------------LVLTDDELPPLVQMWRNASPHIVQ 312

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG----- 574
            W ++ +A ++ I+          +             + L L SGR L Y         
Sbjct: 313 FWWDVDKAAKECIKTHLPQTTHGMK------FIYRSGCMFLRLRSGRYLCYPKPKIGTNR 366

Query: 575 ---NNRSYLN-TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
               + +++   T ++  R  TYG KL ENIVQA SRD+LAE M         +V+ +HD
Sbjct: 367 FGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHD 426

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E V + P     +   +  LMT  P WA GL L A G+ S  Y+K
Sbjct: 427 EAVIDAPSN--RSLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 469


>gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514]
 gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514]
          Length = 947

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 105/697 (15%), Positives = 195/697 (27%), Gaps = 152/697 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
            T   D ET S             ++  +I  AF F+           DP     + Q  
Sbjct: 374 KTFCFDTETTSLD----------TKEARLIGLAFAFEKQKGFYVAVPADPEEAREILQEF 423

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN  +  V HN  ++  VLK    + +   +   T++            +  + E 
Sbjct: 424 RAVFENEQIQKVGHNLKYDLAVLKWH-GVGVH-GKLFDTMLAHSLIEPEMRHGMDYMSEV 481

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                       +LI              +             EY   D  VT +++++L
Sbjct: 482 Y--LGYSPISITKLIGD---------EKSKQLNMADVPVAKVAEYAAEDADVTWQLWEKL 530

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EPL             E  L  +   +   G  VD +     +  +  E    +Q +  L
Sbjct: 531 EPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDASALAEFSTQLSKEMANHEQTIYRL 590

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
                 +     +L   LF +  +       +     T ++ L           ++ + R
Sbjct: 591 AGQ-EFNLNSPRQLGEILFDKLKISENAKKTKTGQYATNEQTLMDLAADHEIVQRLLDYR 649

Query: 281 MRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             A++      + L   +    GR+  T      + TGR +      QN+P  +   +E 
Sbjct: 650 -GATKLKSTYADALPGTIWKPTGRVHTTFNQAVTT-TGRLNSQNPNLQNIPIRTEQGKE- 706

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                                   +R   +   E   L+ AD + IE R++A ++ EQ  
Sbjct: 707 ------------------------IRKAFVPRNEDYVLLSADYSQIELRIIAALSHEQGM 742

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+ F    D++  T AR + V   QVT + R   K++   + Y   A           L 
Sbjct: 743 LEDFGRKLDIHTATAARVYGVPLDQVTPEMRRKAKMVNYGIAYGISA-----FGLAQRLR 797

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +              ++     + R   +   +H   +   G    R  +  R  ++ V 
Sbjct: 798 IPRKEAATIIEQYFAQYPGIAKYMRDTIDFAKQHGYVETVTGR--RRYMRDIRSANAAVR 855

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                  +        G A    K   +                         ++    +
Sbjct: 856 G---GAERNAINAPIQGTAADMIKIAMI-------------------------NIHGELT 887

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-MNATKAGYDIVLTVHDEIVCETP 637
                                          L   M +        +V  VH        
Sbjct: 888 KRK----------------------------LKSRMLLQVHDE---LVFDVH-------- 908

Query: 638 DTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
            T+E     +    M +       +P++ E    K +
Sbjct: 909 QTEENEVRQIVEEKMRTAIQ--LEVPIEVEIGSGKTW 943


>gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
 gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885]
          Length = 1060

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 96/586 (16%), Positives = 165/586 (28%), Gaps = 127/586 (21%)

Query: 98   VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
            + A                 +   +   G EL                            
Sbjct: 582  LAAYLLDPVRN-----RYYLVDVARQFFGWELEEGPADRPDDPACRTTQLLGRD---AAL 633

Query: 158  GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
                +  V                E  L  +   + + G  VD      L ++      +
Sbjct: 634  CARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFTRRSQE 693

Query: 218  LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274
            L +++  L      +    ++L   LF   GL +   T+   +T   VL +     P A 
Sbjct: 694  LAEQIYQLAG-ETFNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETLAARHPIAE 752

Query: 275  QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
             V   R    +     ++ L E +  DGR+  T Q   A+ TGR S      QN+P    
Sbjct: 753  LVLEYR-SLVKLQGTYVDGLAEHIGPDGRVHTTFQQTVAA-TGRLSSTQPNLQNIPIRDE 810

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                         +R   +A  G +LV AD + IE RVLA  +G
Sbjct: 811  PGR-------------------------SLRRAFVAPPGHRLVAADYSQIELRVLAHYSG 845

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            ++  L+AF  G+D++  T +  F V   QVT +Q                          
Sbjct: 846  DEGLLEAFARGQDVHARTASEIFGVPLEQVTPEQ-------------------------- 879

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                   A NF     +     A           R    + +++
Sbjct: 880  ------------------RRVAKAVNFGLAYGQTDYGLARALRIDRADARRFMDRYFERY 921

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              V        +   +  ++G+                            GR     ++ 
Sbjct: 922  PGVKRYM---EETIRRARQHGEVTTLL-----------------------GRRRPVPEIR 955

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
            +   ++        R            +Q  + DI+   M+   +A         IVL V
Sbjct: 956  HRVYHIRQN---AERVAINTP------IQGTAADIMKLAMIRVYRALAGEGLRARIVLQV 1006

Query: 629  HDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            HDE++ E P+ +     ++L   M      A  +PL  +      +
Sbjct: 1007 HDELLVEAPEDEVPAVAALLRREMEGAFPLA--VPLVVDVKAGTNW 1050


>gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273]
 gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273]
          Length = 945

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 98/697 (14%), Positives = 195/697 (27%), Gaps = 152/697 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVL 57
             + +D ET S              +  +   +   +                    ++L
Sbjct: 372 DKIAVDTETTSLD----------TFEAELAGISISAEPAKARFISFAGTGLDRGRSIEIL 421

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +  LEN  +     N  ++  VLK    L++       T++ +          L  +   
Sbjct: 422 RPLLENPAIPKTGQNLKYDILVLKNY-GLELGPVG-FDTMLASYVLDPDGKHNLDDMAAL 479

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                        L  +  K +            +        +Y   D  +  ++    
Sbjct: 480 H------------LRLKTTKYDELTGTGKNRLHIYDVEPAKLTDYACQDADLALQLEGAF 527

Query: 176 EPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTKLDQELES 224
                 E  L  L QTI              G  +D       +  V  +   L + + +
Sbjct: 528 TRNLEAEPRLMELCQTIEFPLVSVLAKMEHQGISIDSKHLEETSMAVGHQLESLRETIHA 587

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
                  +    ++L   LF   GL  +  T+   +T   VL     L P    +   R 
Sbjct: 588 AAGTD-FNIDSPKQLSHILFNVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVSDLLLYR- 645

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              +     ++ L + +N   GR+  +      + TGR S      QN+P  +    E  
Sbjct: 646 SLQKLKTTYIDALPKMVNPRTGRVHTSFNQHV-TATGRLSSSNPNLQNIPIRTPLGRE-- 702

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  +R   I +     L+ AD + IE R+ A ++G+   +
Sbjct: 703 -----------------------IRKAFIPTNPANWLLSADYSQIELRIAAEISGDPKLI 739

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  G D++  T    F+     +T D R   K +   + Y       Q    +  LN+
Sbjct: 740 EAFRNGLDIHAETARVIFDT--EDITADMRRKAKEVNFGVLYG-----IQPFGLSKRLNI 792

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    ++  E++    +    + E   ++      +G    R  +    ++S V  
Sbjct: 793 PRNEAREIIDTYREKYPGLFSSLEGVIEEGRKNGFVTTLLGR--RRYLRDLTSRNSNV-- 848

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +A   T   G A    K                                     
Sbjct: 849 -QKAAERAAMNTPIQGTAADIIKC-----------------------------------A 872

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
           +N  +R++                  +  + +  ++                +V ET + 
Sbjct: 873 MNLCSRRID-----------------AASMQSVMLLQVHDE-----------LVFETTED 904

Query: 640 DEFNASMLYHL-MTSNPSWA--KGLPLKAEGYESKRY 673
           ++     L    M    +    K +P+  +    K +
Sbjct: 905 EKEGLKSLVEEAMIEAAALCGLKNVPVAVDTGIGKNW 941


>gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905]
 gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905]
          Length = 875

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 89/650 (13%), Positives = 187/650 (28%), Gaps = 129/650 (19%)

Query: 30  VILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
           ++  A   D +  +    D      +   L+  LE++       +S   +  LK    + 
Sbjct: 331 LLGIALS-DGNKTQYIPFDIAAKSDI---LRCWLEDSSKIKYMSDSKASQAALKRA-GIQ 385

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +        ++ +  N    +   V    +       +  E +  + KG           
Sbjct: 386 LAGVD-FDLVLASYINNPGLSGDDVATLARELGYYDVQADETV--YGKGAKRAIPEIDKL 442

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
             H           +  +    +  ++ +     E  L  +   +   G  V+ A    +
Sbjct: 443 AQHVSRKAYAVWSLQPKLEALLKENEQFDLYKDLELPLAAILGEMESEGITVNRATLEKM 502

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
            Q ++ +   L+QE+ +       +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 503 GQELNEKLVVLEQEIYAEAG-ETFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLE 561

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K        +   R    +     +  L++ ++       T      + TGR S    
Sbjct: 562 KLKSEHAIIEYILLYRQ-LGKLQSTYIEGLLKEIHEKDSKVHTRFQQALTATGRLSSTDP 620

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383
             QN+P       +                         +R   + S E   L  AD + 
Sbjct: 621 NLQNIPIRLEEGRK-------------------------IRQAFVPSNENWILFSADYSQ 655

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA M+ ++  ++AF  G D++  T    F+V+  +V  + R   K +   +    
Sbjct: 656 IELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIV--- 712

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++    +  +                                     
Sbjct: 713 -----------YGISDYGLSQNLDI------------------------------TRKEA 731

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                 +      V +  +++    +    NG                            
Sbjct: 732 ATFIDKYFASFPGVKQYMDDI---VQNAKFNGYVTTILN--------------------- 767

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
             R     D+ ++            R            +Q  + DI+ + M++       
Sbjct: 768 --RRRYLPDITSSNF---NLRSFAERTAMNTP------IQGSAADIIKKAMIDMDARLKK 816

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                 ++L VHDE++ E P  +      +   +M +       +PLK +
Sbjct: 817 ENMQAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENAIE--LSVPLKVD 864


>gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
 gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA]
          Length = 909

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 91/685 (13%), Positives = 194/685 (28%), Gaps = 162/685 (23%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFE 76
           +  ++ + F  D          HD            +   LK  LE+  ++ +  N  ++
Sbjct: 347 NASIVGWVFLIDK-DSFYVPVNHDYIDAPKQLNFNDVLNQLKPILEDVSISKIGQNLKYD 405

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARF 133
             +L     +D+        +V +           +  + E              L  + 
Sbjct: 406 AHILSNY-KIDLQGIS-DDVIVKSYCLNSVATRHNMNDLSEYY------------LNYQT 451

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------- 182
                      +    ++    +   Y   +V +T  +   L+   ++            
Sbjct: 452 INFVDILGKGKKQVTFNQVNVEIALLYVCENVIITSLLNHMLDEEIAQYPRLVKLYQNLE 511

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +   G  +DV +  T    +  +   +  ++  L    V +    ++++  
Sbjct: 512 LPLIKVLLCMERNGVELDVNILSTQQLDITQQMEDIKNQVFELADN-VFNLESPKQIQRI 570

Query: 243 LFLETGL------HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           LF   GL             +T +  L       P    + + R   ++     L  L  
Sbjct: 571 LFESKGLGLIPLRKTPKGVPSTNEEALKLL--DHPVVDLILSYR-TLAKLNSTYLEVLPR 627

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            ++ +     T      + TGR S      QN+P  S                       
Sbjct: 628 KIDLNTHRLHTSYNQVVTATGRLSSSNPNLQNIPIFSEQG-------------------- 667

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 C+R   I  +G  ++ AD + IE R++  ++ +Q  L+AF   +D++  T +  
Sbjct: 668 -----SCIRGAFITGKGNVIISADYSQIELRIMTQLSKDQNLLEAFNNDKDVHSETASTM 722

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           FN+   +VT + R   K +                    G++                  
Sbjct: 723 FNIPIDEVTSEYRRRAKAINF--------------GLIYGMS------------------ 750

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                           A +     T  ++    +   +  V    + + +  +       
Sbjct: 751 ------------AYGLAKQIGVSRTKAKQYMDTYFDNYPSVLYYMDNIKEIAK------- 791

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                  +    GR L    +      L        R       
Sbjct: 792 -------------------VQGYVETIMGRRLYLPQINAKNKMLQQH---ALRTAINAP- 828

Query: 597 LTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYH 649
                +Q  S DI+ + M +             +++ VHDE+V E   +     S  +  
Sbjct: 829 -----MQGSSADIIKKSMFDVYTWIGQDNPDIRMIMQVHDELVFEVSASKADEFSRKIQA 883

Query: 650 LMTSNPSWAKGLPLKAEGYESKRYR 674
           LM++   +   +PLK +      ++
Sbjct: 884 LMSNT--YLLDIPLKVDVGIGNSWK 906


>gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170]
 gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170]
          Length = 944

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 99/699 (14%), Positives = 205/699 (29%), Gaps = 152/699 (21%)

Query: 1   MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----VMP 54
           M    +  D ET     LT            ++  AF ++           D      + 
Sbjct: 368 MKQNSVCFDTETTGLNPLT----------AELVGIAFSWEAGKGFYIPFPEDKNQAQEII 417

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112
           + L+   E+  +  +  N  ++  VL    N+ +   ++  +++            +  +
Sbjct: 418 ETLRPFFESEMIEKIGQNLKYDIKVLHKY-NIQVK-GKFFDSMLAHYLINPDMRHNMDVL 475

Query: 113 GE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            E  L  +   + E   LI +                          EY   D  +T ++
Sbjct: 476 SETYLNYTPVSITE---LIGK---------KGKNQLSMRDVPLEKQTEYAVEDADITYQL 523

Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            +   P            + E  L ++   +   G  +D     +L++ ++ +  +L  +
Sbjct: 524 AQHFRPELAEASTEELFNTIEIPLLHVLADMELEGINLDKEFLGSLSEDLNNDIKELQSK 583

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           +         +    ++L   LF +  L      T+    +T + VLS   K       V
Sbjct: 584 IYK-EADQEFNIASPKQLGEILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHEIIRNV 642

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   S+     ++ L   +        T      + TGR S      QN+P  +   
Sbjct: 643 LEYR-GLSKLKSTYVDALPLQVEERTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERG 701

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
                                      VR   +   E   L+ AD + IE R++A ++ E
Sbjct: 702 R-------------------------QVRKAFVPRDEDYTLLAADYSQIELRIIAALSEE 736

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++AF+ GED++ +T ++ F+V   +VT++QR+  K +   + Y   A        + 
Sbjct: 737 DTMIEAFKNGEDIHASTASKVFDVPLDEVTREQRSNAKTVNFGIIYGVSA-----FGLSN 791

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             +L+         +  + +    N+     +   ++      +G    R  K     ++
Sbjct: 792 QTDLSRTEAKELIETYYKTYPKLRNYMSEQIDFARDNGYVQTVLGR--RRYLKDINGSNA 849

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V        +        G A    K   +                         ++  
Sbjct: 850 IVRG---AAERNAVNAPIQGSAADIIKIAMI-------------------------NIHK 881

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
             S  N  T+                            ++        +V  VH      
Sbjct: 882 KLSEGNYKTKM---------------------------LLQVHDE---LVFDVH------ 905

Query: 636 TPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +      ++   M +    A  +PL  E      +
Sbjct: 906 --KAELEELKSLIQSEMENAYKLA--VPLDVELGLGDNW 940


>gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
 gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563]
          Length = 907

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 98/671 (14%), Positives = 188/671 (28%), Gaps = 150/671 (22%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKAC 83
            D  V+  A+  +   +       D  + Q    K  L +  VT V  ++     V+   
Sbjct: 360 HDSEVVAVAW-TNGSEIF----TGDARLLQADLFKAWLSDDQVTKVVFDAKR-TKVMLDY 413

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             +D         L+ +           + E  +            +      E      
Sbjct: 414 LGIDFA-GVVDDVLIGSYLLHARDNSNDLAEVAREFD---------MDDLSYDEAIYGKG 463

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTIN 193
            +      E      E+    V +   + + + P     Q           L  +   + 
Sbjct: 464 AKRG--VPEEAETMYEHIARKVHIIARLQETIRPQLEANQMDDLYQKIELPLALVLANLE 521

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  VD     T+          L+ ++         +    ++L   LF E GL +  
Sbjct: 522 ILGISVDKQQLVTMQAEFKEIIAGLEADIWKEAGH-EFNVNSPKQLGVILFEEMGLPVIK 580

Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+   +T Q VL       P    + N R   ++     +  L E ++ DG++    Q 
Sbjct: 581 KTKTGYSTAQDVLEKLAGQAPIIDLILNYRQ-LNKLQSTYVEGLQEFIHEDGKIHSRFQQ 639

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P  S                              +R   + 
Sbjct: 640 -TLTSTGRLSSADPNLQNIPIRSEEGR-------------------------SIRKAFVP 673

Query: 371 S-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           S E   +  +D + IE RVLA ++G++   +AF   ED++ +T  + +NV   +VT + R
Sbjct: 674 SHEDWVIFSSDYSQIELRVLAHISGDKHMQEAFNNHEDIHTSTAMKVYNVPKEEVTSNMR 733

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +                    G++    +                          
Sbjct: 734 RNAKAVNFG--------------IVYGISDYGLSQ------------------------- 754

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                         +     + + +  V     ++ +  ++                   
Sbjct: 755 -----NLNISRPEAKNFIDTYLENYPGVQAYMKDVVEKAKE------------------- 790

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                  +  +     R     D+               R            +Q  + DI
Sbjct: 791 -------DGYVETLFNRRRYLPDLKAKNF---NVRSFAERNAMNTP------IQGTAADI 834

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           +   M+         K   +++L +HDE+V E P  +      L   +M S       +P
Sbjct: 835 IKIAMVKMDEALKEHKLKANLLLQIHDELVFEVPKDEIETLEKLVTEIMGSAAQ--LDVP 892

Query: 663 LKAEGYESKRY 673
           L+ E      +
Sbjct: 893 LEIESNYGATW 903


>gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
 gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2]
          Length = 897

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 82/669 (12%), Positives = 187/669 (27%), Gaps = 143/669 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
            +        +      +      +    +  K   E+ ++    H+      V      
Sbjct: 344 KLAGLCVSIKEGSSYFLNINERLTENEFLEGFKSIFEDGEIKKYGHDLKN-FIVYLKQNG 402

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +++       T++ A           + E   L++  +    + I      E        
Sbjct: 403 IELNGVA-FDTMIGAYIINPSRETYTISE---LAADFLNTNVKPI------EEMAGKGKS 452

Query: 146 NKPNHREAWRLFGE----YCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDR 195
             P               Y +      ++I  +L            E  L  +   +   
Sbjct: 453 FLPFGSMDVEELKNVVGLYPEIIYKAMKKIDDKLNENDQLNLYYKIELPLVRVLADMEFY 512

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G+ +++     +++ +D +  +L  ++  L      +    ++L   LF +  L +   T
Sbjct: 513 GFKININELTVISRQLDEKINQLTLKIYELAG-EEFNINSPKQLGVVLFEKLELPIIKKT 571

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL    +       +   R    +     +  L+  +N       +     
Sbjct: 572 KTGYSTDAEVLEELAEKHEIVSNILEYRQ-LVKLKSTYIEGLMAVINPHTGKIHSSFNQT 630

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P                                 +R   +  +
Sbjct: 631 VTVTGRISSTEPNLQNIPIKLEMGR-------------------------NIRKAFVPCD 665

Query: 373 G-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           G  KLV AD + IE RVLA +  ++  + AF   ED++ +T ++ F V   +VT   R+ 
Sbjct: 666 GNYKLVDADYSQIELRVLAHITDDENMIGAFNNNEDIHTSTASKVFGVPNEEVTSALRSK 725

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   +                G+   + +                            
Sbjct: 726 AKAVNFGIV--------------YGIGDFSLSK--------------------------- 744

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
              +              +  K++ V +  +++    ++                     
Sbjct: 745 ---DLGITRKEARNYIDGYLDKYANVRKYMHDIVAQGKE--------------------- 780

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     ++  +            R            +Q  + DI+ 
Sbjct: 781 -----FGFVTTMFNRRRYLPELKASNF---NVRSFGERIAMNTP------IQGSAADIIK 826

Query: 612 EGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLK 664
             M+         +    ++L VHDE++ E  +++    +M+    M +    A  +PL 
Sbjct: 827 IAMVMVHSELNRRQLKSRLILQVHDELIIEAHESELEEVTMILKESMENAT--ALKVPLS 884

Query: 665 AEGYESKRY 673
            +      +
Sbjct: 885 VDVKSGNSW 893


>gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9]
 gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9]
          Length = 908

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 100/697 (14%), Positives = 203/697 (29%), Gaps = 153/697 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVM 53
           + +D ET S   L             ++  +   D          H             +
Sbjct: 334 VALDTETNSLDQLKT----------RLVGISLSTDIGKAWYIPVAHQVELGCNQLMKAEV 383

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111
            + ++  LE+   T +  N+ ++  V      + +   +   T+VLA          L+A
Sbjct: 384 LEAMRSWLESEQKTKILQNAKYDMHVFAN-EGIVLKGIK-HDTMVLAYVIDTNQRVGLEA 441

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +              K L  +    E       +             +Y   D   T  +
Sbjct: 442 LSL------------KYLNRKGLSYEEICGKGAKAITFDYVPLDQATQYACEDADFTFHL 489

Query: 172 FKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              L P                ++  +   +   G  +D +   + ++I+    +KL+ E
Sbjct: 490 LTELLPKLEGFEGLKFIYDLEMQVLQVLFDMERVGVLIDSSKLLSQSEIISCRLSKLESE 549

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
           + +L      +    ++L   LF +  L  +  T     +T +  L       P A+ + 
Sbjct: 550 IFNLAG-EEFNINSPKQLSEILFTKLKLETQGKTRTGVISTNEDALEKLALDHPIAVHLL 608

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R   S+      + L   +N       T+       +GR S      QN+P  +    
Sbjct: 609 EYR-SLSKLKSTYTDKLPTMINKVTGRVHTVFSQTTVLSGRLSSFDPNLQNIPIRNEDGR 667

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     VR   +A +G KL+ AD + +E R++A ++ ++ 
Sbjct: 668 -------------------------QVRQAFVAEDGFKLMSADYSQVELRLMAHISNDEG 702

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            LKAF+ G D++ +T +  F V  ++V   QR   K +   L Y  GA      A    L
Sbjct: 703 MLKAFKEGADIHRSTASEVFGVPLSEVDDSQRRAAKAINFGLIYGMGA-----FALANNL 757

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            ++            + +     F   ++    +    +   G          R     +
Sbjct: 758 GISRETAQNYIYKYFDRFPKVRKFMDDIKIQASQDGYVETIYGR---------RIYIPGI 808

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +      +   +      AI A  +     +                            
Sbjct: 809 QD-----SKGARKAALERVAINAPVQGSAADIIK-------------------------- 837

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
             + +  + +++                   I+    +        +VL VH        
Sbjct: 838 MAMISVHKWISQNKLNSR-------------II----LQVHDE---LVLEVH-------- 869

Query: 638 DTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +++       L  LM         +PL+A+      +
Sbjct: 870 ESEIEILKLKLPKLMEDVAK--LDVPLEAQVNVGSNW 904


>gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49]
 gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49]
          Length = 949

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 100/699 (14%), Positives = 216/699 (30%), Gaps = 152/699 (21%)

Query: 1   MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MP 54
           M    +  D ET     LT            ++  AF ++           +      + 
Sbjct: 373 MKQPSVCFDTETTGLNPLT----------AELVGIAFSWEAGKGFYIAFPKEKEAAQEII 422

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAV 112
           ++L+   E T++  +  N  ++  VL+   ++ +   +   T++            +  +
Sbjct: 423 ELLRPFFEATEIEKIGQNLKYDLKVLRKY-DIVVK-GQLFDTMLAHYLINPDMRHNMDIL 480

Query: 113 GE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            E  L  +   + E   LI +              K           EY   D  +T ++
Sbjct: 481 AETYLNYTPVSITE---LIGK---------KGKNQKSMRDVPVADQTEYAVEDADITLQL 528

Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            +                  E  L  +   +   G  +D    ++L+  ++ +   L++ 
Sbjct: 529 KEHFSKELGEANTQKLFTDIEVPLLRVLAAMEAEGINLDKTFLNSLSDDLESDIASLEKN 588

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQV 276
           + +       +    ++L   LF +  L      T+    +T + VLS+  K       V
Sbjct: 589 IYAEAG-EEFNIASPKQLGEILFGKMKLVEKPKKTKTGQFSTAEDVLSALAKDHKIIADV 647

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R   ++     ++ L   +    +   T      + TGR S      QN+P  +   
Sbjct: 648 LEYR-GLAKLKSTYVDALPLQVEPATQRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERG 706

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGE 395
                                      VR   +   E   L+ AD + IE R++A ++ E
Sbjct: 707 R-------------------------QVRKAFVPRDENYVLLAADYSQIELRIIAALSQE 741

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  ++AF+ GED++ +T ++ F+V   +VT++QR+  K +   + Y   A        + 
Sbjct: 742 ETMMEAFKNGEDIHASTASKVFDVPLEEVTREQRSNAKTVNFGIIYGVSA-----FGLSN 796

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             +L+        ++  E +   +++         ++   +  +G    R   A    ++
Sbjct: 797 QTSLSRGEAKELIDAYYETYPKLKHYMSEQVNFARDNGYVETIMGR--RRYLNAINGSNA 854

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V        +        G A    K   + +                     YR +  
Sbjct: 855 IVRG---AAERNAVNAPIQGSAADIIKIAMINI---------------------YRKLEE 890

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVC 634
                                               + ++        +V  VH DE+  
Sbjct: 891 GNYKT-------------------------------KMLLQVHDE---LVFDVHKDEL-- 914

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 +   +M+ H M +   +   +PL  E    + +
Sbjct: 915 ------DEMKTMIKHEMENA--YLMDVPLDVEVGIGQNW 945


>gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
 gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256]
          Length = 937

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 96/710 (13%), Positives = 183/710 (25%), Gaps = 169/710 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----------- 51
            + +D ET S   +T            ++  +              H             
Sbjct: 356 VVAVDTETASLDSVT----------GRLVGVSLSTGAGKACYIPLGHGGTDMFAEKPEQI 405

Query: 52  ---VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-- 106
                 + L     +  V  V HN  ++  VL       + +  +  TL+++ +      
Sbjct: 406 AMGDALERLGALFADDAVLKVGHNLKYDIGVLAQH---GVTVAPYDDTLLMSFALDAGKH 462

Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              L  + +              L       +                     EY   D 
Sbjct: 463 QHGLDELAKLH------------LDHVCLSFKDVCGTGKSQISFAEVQLDRATEYAAEDA 510

Query: 166 TVTRE----------IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
            V             +          ++ L  + + +   G  VD      L+     E 
Sbjct: 511 EVAWRLWKLLKLRLPLEGGTRVYEMVDRPLAAVVEGMERAGIMVDRDYLAKLSGEFANEM 570

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTP 271
            +++ E+ +L      +     +L   LF + GL      ++    T Q  L   ++   
Sbjct: 571 LRIEGEIHALAGQP-FAIGSPRQLGEILFDKMGLKGGRKGKSGDWSTDQNELERLERDGV 629

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              +      + ++      + L E +N+      T   L  ++TGR S      QN+P 
Sbjct: 630 PIARKILEWRQLAKLKSTYTDALQEQVNATTGRVHTSYSLVGAQTGRLSSTDPNLQNIPI 689

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
            +                              +R   IA+ G  L+ AD + IE R+ A 
Sbjct: 690 RTEVGR-------------------------QIRDAFIAAPGHVLIAADYSQIELRLAAH 724

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           MA      +AF  G+D++  T    F     +V +D R   K +  ++ Y        + 
Sbjct: 725 MADVPELKEAFARGDDIHAATAIELFG----EVNRDTRGKAKTVNFSILYGIS-----RW 775

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                L +         +   E +    ++     E        +   G         W 
Sbjct: 776 GLAGRLEITPDEAQALISRYFERFPGISDYISDTLETARARGYTETLFGRK------TWF 829

Query: 512 QKHSRVSELWNEL----HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
               R+            +A       G +    KR    +     D             
Sbjct: 830 ---PRIKAANQNERAGSERAAINAPIQGTSADLIKRAMARMPGALADAGL---------- 876

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
                                                   D+  + ++            
Sbjct: 877 ---------------------------------------ADV--KMLLQVHD-------- 887

Query: 628 VHDEIVCETPDTDEFNASMLYH-LMTSN--PSWAKGLPLKAEGYESKRYR 674
              E+V E P+     A  +   +M     P+    +PL+ E    K + 
Sbjct: 888 ---ELVFEAPEDKAAAAGEVIRAVMMGAAEPALKLSVPLEVEIGTGKSWG 934


>gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2]
 gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2]
          Length = 884

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 96/683 (14%), Positives = 184/683 (26%), Gaps = 147/683 (21%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           ET                   ++   F        +   V        ++E L + +   
Sbjct: 327 ETHGDNP----------HHAEIVGLIFAATGRQFFMTLNVLQSDAATPIREWLADPERKK 376

Query: 69  VAHNSYFERT----VLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQ 121
             H    +       L     ++          +             L  +     LSS 
Sbjct: 377 RGH----DLHRTDLALHWH-GIEFAGAE-FDVQLAGYLLDPTDANQTLSGLAAKYGLSSI 430

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           + ++       F KG  ++        +H        E          E  +  +     
Sbjct: 431 RPDD-----EVFGKGAKYKVPEMDVLSDHVARKAAVIEALVPVQQAELEKTEMHKLFHEL 485

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +  +G  V+V     L +  + +   L  E+ S+      +    ++L  
Sbjct: 486 EMPLSRILADMEKQGILVNVEELRALGKEFEAQIATLVGEIYSIAGV-EFNLNSPKQLGE 544

Query: 242 WLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF + GL +   T+   +T   VL            +   R   ++     +  L++ +
Sbjct: 545 ILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHDIVQNILQYR-TIAKLQSTYVEGLLKEI 603

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +       T      + TGR S      QN+P       +                    
Sbjct: 604 SEKTGKVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRK-------------------- 643

Query: 359 IISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   +    G  ++ AD + IE RVLA ++ ++   +AF    D++  T +  F
Sbjct: 644 -----IRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDVF 698

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            V    V  D R   K +   + Y            +  LN+         +   + ++ 
Sbjct: 699 GVPAEAVDSDMRRSAKAVNFGIVYGIS-----DYGLSQNLNITRKEAARFIDQYFDVFQG 753

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
              +   + ++                                                 
Sbjct: 754 VRRYMDDIVKDAKRDGYVKTL--------------------------------------- 774

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
               +RR +P +                           R+ +NT               
Sbjct: 775 --LERRRYLPEINASNFNQRSF---------------AERTAMNT--------------- 802

Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HL 650
               +Q  + DI+   M+    A         ++L VHDE+V E P  +      L    
Sbjct: 803 ---PIQGTAADIIKLAMVQMDAALRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPAT 859

Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673
           M +    A  +PLKAE      +
Sbjct: 860 MEAALKLA--VPLKAEVSYGSNW 880


>gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis]
          Length = 871

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 97/678 (14%), Positives = 198/678 (29%), Gaps = 146/678 (21%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76
                     +  V   AF FD       D        + L+E  E  D   V+H    +
Sbjct: 315 KNVAFYPLIYEGDVKKIAFSFD-GTTLYSDVER----LEDLREIFEREDCEFVSHEIK-D 368

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
             V  +   ++    +++ T ++A       +   +   LK         K L       
Sbjct: 369 FLVKLSYKGIECK-SKYLDTAIMAYLLNPSESNYDLDRVLK---------KYLKVDVLSH 418

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----------SSKEQELW 186
           E         +     +  +  EY  G      E+  +L                E  L 
Sbjct: 419 EEVFGKGKDRRRYEEVSEEVMAEYICGRCNHLFELKDKLMSFIEEMDMKKLLLEIEMPLV 478

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +++   G+ +D  +   L++ +D   +++  ++         +    ++L  +LF +
Sbjct: 479 EVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGYQ-FNVNSPKQLGEFLFEK 537

Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
             L +   T+   +T   VL           ++   R   ++     +   +  M+ + R
Sbjct: 538 LNLPVIKKTKTGYSTDSEVLEQLTAYNDIVSEIIEYRQ-LTKLKSTYIEGFLPLMDENDR 596

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +    + + A+ TGR S      QN+P                                 
Sbjct: 597 VHSNFKQMVAA-TGRISSTEPNLQNIPVREEFGR-------------------------Q 630

Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   I   +   +V AD + IE RVLA ++ ++  ++AF   ED+++ T +  F V P 
Sbjct: 631 IRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQ 690

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT + R                          G++                        
Sbjct: 691 NVTPEMRRAA--------------KVVNFGIIYGISD----------------------- 713

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                     A +        +     + +K+  V E   ++ +  ++            
Sbjct: 714 -------YGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKE------------ 754

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                         N  +     R     ++ +      T   Q  R            +
Sbjct: 755 --------------NGYVTTIMNRRRYIPEINSRNF---TQRSQAERLAMNTP------I 791

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655
           Q  + DI+   M+   +          ++L VHDE+V +T   +      +    M +  
Sbjct: 792 QGSAADIIKMAMVKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVI 851

Query: 656 SWAKGLPLKAEGYESKRY 673
                +PL  E      +
Sbjct: 852 K--LKVPLVVEIGVGPNW 867


>gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 635

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 96/678 (14%), Positives = 199/678 (29%), Gaps = 146/678 (21%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76
                     +  V   AF FD       D        + L++  E  D   V+H    +
Sbjct: 79  KNVAFYPLIYEGDVKKIAFSFD-GTTLYSDVER----LEDLRKIFEREDAEFVSHEIK-D 132

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
             V  +   ++    +++ T ++A       +   +   LK         K L       
Sbjct: 133 FLVKLSYKGIECK-SKYLDTAIMAYLLNPSESNYDLERVLK---------KYLKVDVLSH 182

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----------SSKEQELW 186
           E         +     +  +  EY  G  +   E+  +L                E  L 
Sbjct: 183 EEVFGKGKDRRRYEEVSEEVMAEYICGRCSHLFELKDKLMAFIEEMDMKKLLLEIEMPLV 242

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +++   G+ +D  +   L++ +D   +++  ++         +    ++L  +LF +
Sbjct: 243 EVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGYQ-FNVNSPKQLGEFLFEK 301

Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
             L +   T+   +T   VL           ++   R   ++     +   +  M+ + R
Sbjct: 302 LNLPVIKKTKTGYSTDSEVLEQLTAYNDIVSEIIEYRQ-LTKLKSTYIEGFLPLMDENDR 360

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +    + + A+ TGR S      QN+P                                 
Sbjct: 361 VHSNFKQMVAA-TGRISSTEPNLQNIPVREEFGR-------------------------Q 394

Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   I   +   +V AD + IE RVLA ++ ++  ++AF   ED+++ T +  F V P 
Sbjct: 395 IRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQ 454

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT + R                          G++                        
Sbjct: 455 NVTPEMRRAA--------------KVVNFGIIYGISD----------------------- 477

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                     A +        +     + +K+  V E   ++ +  ++            
Sbjct: 478 -------YGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKE------------ 518

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                         N  +     R     ++ +      T   Q  R            +
Sbjct: 519 --------------NGYVTTIMNRRRYIPEINSRNF---TQRSQAERLAMNTP------I 555

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655
           Q  + DI+   M+   +          ++L VHDE+V +T   +      +    M +  
Sbjct: 556 QGSAADIIKMAMVKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKESMENVI 615

Query: 656 SWAKGLPLKAEGYESKRY 673
                +PL  E      +
Sbjct: 616 K--LKVPLVVEIGVGPNW 631


>gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005]
          Length = 876

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 88/675 (13%), Positives = 174/675 (25%), Gaps = 157/675 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 328 HDAPIVGIALV--NEHGRFFLRAEMALADSQFLAWLADETKKK----SMFDAKRAAVALK 381

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++        L+ A           V         KM++ + +             
Sbjct: 382 WKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA-- 433

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYLD 189
             R+ P+                     I+    P   +             EQ L  + 
Sbjct: 434 -KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDGLLIKLEQPLATIL 485

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  VD      +   +  +   ++Q +  L      +    ++L   LF +  L
Sbjct: 486 AEMEFTGIKVDTKRLEQMGSELAEQLRAVEQRIYELAGQ-EFNINSPKQLGIILFEKLQL 544

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL            + + R    +     +  L++ ++ D     
Sbjct: 545 PVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHPDTGKVH 603

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T+     ++TGR S      QN+P       +                         +R 
Sbjct: 604 TMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IRQ 638

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             +       +  AD + IE RVLA +A +   ++AF    D++  T    F+V+  +VT
Sbjct: 639 AFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVT 698

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R   K +                    G++    A                      
Sbjct: 699 ATMRRQAKAVNF--------------GIVYGISDYGLAQ--------------------- 723

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                 + +      V      + Q  +Q    G          
Sbjct: 724 ---------NLNITRKEAAEFIERYFASFPGVKRYMETIVQEAKQ---KGYVTTLLH--- 768

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                               R     D+ +             R            +Q  
Sbjct: 769 --------------------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGS 799

Query: 606 SRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+ + M++        +    ++L VHDE++ E P  +      L   +M      A
Sbjct: 800 AADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV--A 857

Query: 659 KGLPLKAEGYESKRY 673
             +PLK + +    +
Sbjct: 858 LRVPLKVDYHYGPTW 872


>gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98]
          Length = 877

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 95/660 (14%), Positives = 190/660 (28%), Gaps = 127/660 (19%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F    D+     +      +  +   + L++ ++     ++      LK    
Sbjct: 329 HKADIQGFGIQNDNG--CYFIPTDIALASEAFIKWLKDEEMRKYTFDAKRAIVALKW-KG 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           ++I        L+ A         K      K   ++    K     + KG         
Sbjct: 386 VEIRGVD-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPAQE 442

Query: 146 NKPNHREAWRLFGEYCKGDVTV-TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      +   E  ++ E   + E  L  +   +  +G  VD    
Sbjct: 443 IVAEH-VARKVHVLYDVKQTFIDELEKNEQYELFINLEMPLACVLADMEVKGVKVDTERL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             +   +     +++QE+  L      +    ++L   LF +  L +   T+   +T   
Sbjct: 502 RNMGDELAGRLKEMEQEIYELAGT-EFNINSPKQLGVVLFEKLNLPVIKKTKTGYSTSAD 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL           ++ + R    +     +  L++ ++ +     T      ++TGR S 
Sbjct: 561 VLDKLMDHHEIIPKILHYRQ-LGKLNSTYIEGLLKVVHDESSKIHTRFNQVLTQTGRLSS 619

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380
                QN+P       +                         +R   I S EG  +  AD
Sbjct: 620 TEPNLQNIPIRLEEGRK-------------------------IRQAFIPSQEGWVMYAAD 654

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +     
Sbjct: 655 YSQIELRVLAHIAKDKGLIEAFQHDMDIHTKTAMDVFGVEKDEVTANMRRQAKAVNF--- 711

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G++    +                                     
Sbjct: 712 -----------GIVYGISDYGLSQ------------------------------NLGITR 730

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
            A     + +      V E  +E+ Q  +Q                             +
Sbjct: 731 KAAGEFIEKYFASFPGVKEYMDEIVQEAKQ--------------------------KGYV 764

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----N 616
                R     ++ +             R            +Q  + DI+ + M+     
Sbjct: 765 STLLNRRRYIPEITSRNF---NVRSFAERTAMNTP------IQGSAADIIKKAMIVMADR 815

Query: 617 ATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 816 LEEEGLQARLLLQVHDELIFEVPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
 gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071]
          Length = 875

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 80/662 (12%), Positives = 180/662 (27%), Gaps = 144/662 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
                       +         +  +E +E+   T V +++      +     + + I  
Sbjct: 333 IGLTVHSSQGTYFFTKETAENSEAFREWVESEQ-TKVVYDAKKTMVAMNR---IGLAISG 388

Query: 93  W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                ++ +       ++     V      +  + +E             +     R+ P
Sbjct: 389 ITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AVYGKGAKRSTP 437

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
                             + + +   LE       +   E  L ++   +  +G  VD  
Sbjct: 438 EESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTE 497

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +      L++ + SL      +    ++L   LF + GL     T+   +T 
Sbjct: 498 RLENMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 556

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL S         ++   R    +     +  L++  + +     T      ++TGR 
Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +    G K+  
Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 650

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +   
Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN-- 708

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    +                                   
Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +     +   +  V E   ++ +  ++  +     I                   
Sbjct: 727 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617
                  R     ++ +             R            +Q  + DI+ + M+   
Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
                 K    ++L VHDE++ E P+ +      +   +M +       +PLK +     
Sbjct: 812 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869

Query: 672 RY 673
            +
Sbjct: 870 TW 871


>gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
 gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80]
          Length = 878

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 102/663 (15%), Positives = 208/663 (31%), Gaps = 131/663 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81
           Y +D  ++ F F +D     + D  +    P+ L + LEN +   V +++   F   V+ 
Sbjct: 330 YLKD-DILKFGF-YDKERYIVVDADNIKDYPE-LIKWLENENSKKVVYDAKKTF---VIA 383

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              N++I  +     ++ +        +  V     +++      KE ++ + KG+    
Sbjct: 384 HRLNINIQ-NIVFDAMLASYIIDPSRTIDDV--YSVVTNYHQTYVKEDVSIYGKGKKRHV 440

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
                   H  +     +  K  +    E  +++  L   E  L  +   + + G   DV
Sbjct: 441 PDTEILNTHIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDV 500

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                + Q +  +   L Q +         +    ++L   LF    L +   T+   +T
Sbjct: 501 NDLQHMQQELQEKLELLVQRIHDAAG-EEFNINSPKQLGVVLFETLKLPVIKKTKTGYST 559

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    +   R   ++     +  L + +++D R+        A +TGR
Sbjct: 560 AVDVLEQLQNEHPIINDILEYRQ-LAKLQSTYVEGLQKVISNDKRIHTRFNQTLA-QTGR 617

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377
            S      QN+P       +                         +R     S E   ++
Sbjct: 618 LSSVDPNLQNIPIRLEEGRK-------------------------IRKAFKPSSEDSVIL 652

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +  +    +AF  G+D++  T  + F V   +VT   R   K +  
Sbjct: 653 SADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNF 712

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y            +  LN+      +  +     +   + +   + ++   +   + 
Sbjct: 713 GIVYGIS-----DYGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVET 767

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                                                       +RR +P +  +     
Sbjct: 768 L-----------------------------------------LHRRRYIPDITSRNFNLR 786

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                              R+ +NT                   +Q  + DI+   M+  
Sbjct: 787 GF---------------AERTAMNT------------------PIQGSAADIIKLAMVEF 813

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYES 670
            K          ++L VHDE++ E P ++    S+    +M         +PLK +    
Sbjct: 814 DKQVQHTSYKAKLLLQVHDELIFEVPKSEVEEFSLFVEDIMEHALD--LDVPLKVDSNYG 871

Query: 671 KRY 673
             +
Sbjct: 872 PTW 874


>gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
 gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1]
          Length = 1022

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 94/729 (12%), Positives = 198/729 (27%), Gaps = 175/729 (24%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
               +D ET S              +  ++  +F    H        H             
Sbjct: 407  YFAVDTETTSIN----------WREAQIVGLSFSVQAHEAYYLPLAHVDYNEPQKKAKNK 456

Query: 50   ------------------------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
                                       +   LK  LEN ++  +  +  ++  VL     
Sbjct: 457  KEEAEQAKLLANATVDPLIAKQLDRDTVLAKLKPILENPNIGKIGQHLKYDAHVLSKY-G 515

Query: 86   LDIP--IHRWI-CTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
            +++      W   T++ +          ++  +      +                 E  
Sbjct: 516  IELNMSPKNWEMDTMLASYVLNAAATRHSMDDLARHYLHTQ------------TISFEDV 563

Query: 140  ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWYL 188
                 +     + A  +  +Y   D  +T ++F+  +                E  +  +
Sbjct: 564  AGKGAKQVTFDKVAINIASDYACEDADITYQLFELFQDKLKDDAVNQRLLHELEIPVAQI 623

Query: 189  DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
               +   G  +  +  + L++  D E   L+++   +  G   +    ++L   LF + G
Sbjct: 624  LCQMESEGIMIKRSFLNELSERFDEEIVALEKQAY-IEAGEAFNLGSPKQLGEMLFDKLG 682

Query: 249  LHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            +     T++    T + VLS      P A      R   ++      + L    ++D   
Sbjct: 683  VIGGKKTKSGQYSTGEAVLSKI--EHPLAEIALEYR-SLAKLKNTYTDALDAVADNDTDR 739

Query: 305  RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
              T      + TGR S      QN+P  +++                            +
Sbjct: 740  VHTSYHQALTSTGRLSSTDPNLQNIPIRTKTGR-------------------------LI 774

Query: 365  RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
            R   IA +G+ L+ AD + IE R++A  +G+    +AF  G D++  T A     +   V
Sbjct: 775  RQAFIAPKGRVLLAADYSQIELRLMAHFSGDDNLTRAFNEGLDIHSATAAEVLGKSVDDV 834

Query: 425  TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
            T  +R   K +   L Y   A           + +         N     +   + + + 
Sbjct: 835  TPTERRNAKAINFGLLYGMSA-----FGLAKQIQMGRSEAQDYINQYFARYPGVQRYMQE 889

Query: 485  MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
             + +  ++   +  +G             +  V        +A       G A    K  
Sbjct: 890  TRNSAVDNGYIETILGRKLYTPDIQ--HSNQMVR---RGAERAAINAPLQGSAADLIKLA 944

Query: 545  DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
             + +            +LP   + +   V +   +     +                   
Sbjct: 945  MIAVDN----------VLPKQNAKMLLQVHDELVFEVDADKVDHIAK------------- 981

Query: 605  VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664
                ++   M N                            S     M  +  +A  +PL 
Sbjct: 982  ----LIKNAMQNV--------------------------LSDTAKQMGWDVDFA--VPLL 1009

Query: 665  AEGYESKRY 673
             E      +
Sbjct: 1010 VETGVGDNW 1018


>gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816]
          Length = 694

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 80/662 (12%), Positives = 181/662 (27%), Gaps = 144/662 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
                       +         +V ++ +E+   T V +++      +     + + I  
Sbjct: 152 IGLTVHSSQGTYFFTKETAESSEVFRKWVESDQ-TKVVYDAKKTMVAMNR---IGLAISG 207

Query: 93  W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                ++ +       ++     V      +  + +E             +     R+ P
Sbjct: 208 ITFDIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDE-----------AVYGKGAKRSTP 256

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
                             + + +   LE       +   E  L ++   +  +G  VD  
Sbjct: 257 EESIVAAHLARKAVAIADLEKRLVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTE 316

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +      L++ + SL      +    ++L   LF + GL     T+   +T 
Sbjct: 317 RLENMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 375

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL S         ++   R    +     +  L++  + +     T      ++TGR 
Sbjct: 376 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 434

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +    G K+  
Sbjct: 435 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 469

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +   
Sbjct: 470 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN-- 527

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    +                                   
Sbjct: 528 ------------FGIVYGISDYGLSQ------------------------------NLGI 545

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +     +   +  V E   ++ +  ++  +     I                   
Sbjct: 546 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 586

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617
                  R     ++ +             R            +Q  + DI+ + M+   
Sbjct: 587 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 630

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
                 K    ++L VHDE++ E P+ +      +   +M +       +PLK +     
Sbjct: 631 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 688

Query: 672 RY 673
            +
Sbjct: 689 TW 690


>gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
 gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159]
          Length = 917

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 99/691 (14%), Positives = 190/691 (27%), Gaps = 132/691 (19%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQVLK 58
           D ET     L       +     ++  A              H           + Q L 
Sbjct: 323 DLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDIEQVLQRLA 382

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG-EAL 116
             L + +    AH+  ++  VL+         H    T++ A   G  +  LK +    L
Sbjct: 383 PFLRHPEKQRYAHHGKYDALVLERAG--FPRPHIDFDTMIAAYLLGENAVGLKELAFTKL 440

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
               +++ E                   +     R       +Y   DV  T  + + L 
Sbjct: 441 GWEMEEITEL-------------IGRGKKQLTMDRAEIARVTQYACADVEATYRLVEVLR 487

Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P                 L  +   +   G  +DV     L+ ++D +   L++ +  L 
Sbjct: 488 PQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELA 547

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                +    ++L T LF E GL     T+   +  Q VL + +   P    +   R   
Sbjct: 548 GHP-FNINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLL 606

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     ++ L   ++       T+     + TGR S      QN+P        + +  
Sbjct: 607 -KLKSTYVDALPRQVHPQTGRVHTIFHQTVAATGRLSSSDPNLQNIPARGELGLAVRRAF 665

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                                    IA E   L+  D + IE R++A  + +   L+AF 
Sbjct: 666 IADNRPGYR----------------IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFA 709

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T +  F V    VT + R I KV+   + Y       Q         ++   
Sbjct: 710 EGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGM-----QAYGLARDTGMSRQD 764

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                 +  + +     +    +    E    +   G    R        +    +    
Sbjct: 765 AQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGR--RRYLPEITSSNPARRQ---A 819

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +        G A    K   + +                 R+L  R + +        
Sbjct: 820 AERMAVNMPLQGTAADIMKLAMIAVH----------------RALAERGLRS-------- 855

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
                                         ++                +V E P+++   
Sbjct: 856 ----------------------------RMLLQVHDE-----------LVLEVPESELAT 876

Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            + L    M+        +PL+ +      +
Sbjct: 877 TTELVTTRMSRVVE--LSVPLEVDAKAGPNW 905


>gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8]
          Length = 876

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 86/668 (12%), Positives = 174/668 (26%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 328 HDAPIVGIALV--NEHGRFFLRAEMALADSQFLAWLADETKKK----SMFDAKRAAVALK 381

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++        L+ A           V         KM++ + +             
Sbjct: 382 WKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA-- 433

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWY--LDQTINDRG 196
             R+ P+                 + R    E+    +     + E     +   +   G
Sbjct: 434 -KRSLPDEPTLAEHLVRKAAAIWALERPSLDELRSNEQDGLLIKLEQPLATILAEMEFTG 492

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      +   +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 493 IKVDTKRLEQMGSELAEQLRAVEQRIYELAGQ-EFNINSPKQLGIILFEKLQLPVLKKTK 551

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ ++ D     T+     
Sbjct: 552 TGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHPDTGKVHTMFNQAL 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SE 372
           ++TGR S      QN+P       +                         +R   +    
Sbjct: 611 TQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IRQAFVPSEP 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F+V+  +VT   R   
Sbjct: 646 DWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQA 705

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 706 KAVNF--------------GVVYGISDYGLAQ---------------------------- 723

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + +      V      + Q  +Q    G                 
Sbjct: 724 --NLNITRKEAAEFIERYFASFPGVKRYMETIVQEAKQ---KGYVTTLLH---------- 768

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 769 -------------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGSAADIIKK 806

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M      A  +PLK 
Sbjct: 807 AMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV--ALRVPLKV 864

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 865 DYHYGPTW 872


>gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
 gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC
           27560]
          Length = 877

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 96/672 (14%), Positives = 191/672 (28%), Gaps = 161/672 (23%)

Query: 32  LFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
             +  F++  V        V +  + + +++ +          N+  E T+L    N DI
Sbjct: 333 GVSLCFNNDNVYYIGKEGFVTEDYIIEKVRDLV----------NAKAELTILNIKENNDI 382

Query: 89  ----PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
                        + A              +                L       +    
Sbjct: 383 LENDDAESIFDISIAAYLLNPLQNTYDYDDIAREY------------LGMNVPAFDEIFP 430

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLEP------LSSKEQELWYLDQT 191
              +N+    E      +Y   +  V  +    + ++L+        ++ E  L Y    
Sbjct: 431 KTKKNETPSDEIPENILKYACYNAYVAYKAKDALTEKLKETEMLDIYNNVEIPLTYALYD 490

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  V         + +      L++++ +       +    ++L   LF E  L  
Sbjct: 491 MEQAGIMVAGDKLKEYGERLKTGIDALEKDIFAEAGH-EFNINSPKQLGEILFGEMQLPG 549

Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              T+   +T   VL   +   P   ++   R   ++      + L   +  D R+ G  
Sbjct: 550 GKKTKTGYSTSASVLEKLEPDYPFVSKILEYRQ-LAKLKSTYADGLAVYIGEDNRIHGKF 608

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P       E                         +R   
Sbjct: 609 NQ-TITATGRISSTEPNLQNIPVRMPLGRE-------------------------IRKVF 642

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           I  EG   + AD + IE R+LA M+ ++  + A+   +D++  T +  F+V   +VTK+Q
Sbjct: 643 IPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATASLVFHVPLEEVTKEQ 702

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R+  K +   + Y            +  L++                             
Sbjct: 703 RSNAKAVNFGIVYGIS-----SFGLSNDLSI----------------------------- 728

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          E+  K +   +  +      L  + ++  E G ++          
Sbjct: 729 ----------SRKEAEQYIKDYFISYPGIKNY---LDNSVKEAKEKGYSVTM-------- 767

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     ++ +             R            +Q  + D
Sbjct: 768 ---------------FGRRRPIPELTSGNFMQRQF---GERVAMNSP------IQGSAAD 803

Query: 609 ILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGL 661
           I+   M+N  K          IVL VHDE++ E  + +      +    M         +
Sbjct: 804 IMKIAMINVAKELKEKDLKSKIVLQVHDELLIEAYENEVEQVKDILKRNMEQAAH--LNV 861

Query: 662 PLKAEGYESKRY 673
           PL  +      +
Sbjct: 862 PLDVDVQVGNNW 873


>gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100]
 gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100]
          Length = 879

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 90/699 (12%), Positives = 205/699 (29%), Gaps = 167/699 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVLKEAL 61
            +  D ET               ++  ++ F+F   +         HD   + + +    
Sbjct: 318 IVAFDTETTGLD----------TKEAKIVGFSFCSHESEAFYVPLAHDYLGVCKQISMQA 367

Query: 62  ENTDVTIV------AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG 113
               +  +       HN  ++  ++K  FNL +P   +  T++LA          +  + 
Sbjct: 368 AKKGIEKIYQSTVIGHNLKYDFEIIKNNFNL-LPPKNYADTMILAWLKEPSLRVNMDVLA 426

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +   +   +    ++L+              + +           +Y   D  +T   + 
Sbjct: 427 KR--IFDYETLHFEDLVK-------------KGESFAGVDVEKACKYAAEDAYITLRFYL 471

Query: 174 RLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                  K           E   +   + + G  +D+    +L Q  + +   L +++  
Sbjct: 472 YFLKNLEKSLLELAQKSEFEFIKVLIMMENNGIKLDIQKLESLMQNFNQDIKILSEKIYD 531

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
           L      +    +++   LF +  L     ++   +T ++VL++         ++   R 
Sbjct: 532 LAG-EKFNINSPKQVGDILFEKLKLPSGKKSKTGYSTDEKVLNNLIDEHLIIKEILAYR- 589

Query: 282 RASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             ++        L++    D   R+  +    G + TGR S      QN+P   +  ++ 
Sbjct: 590 ELAKLVGTYCEPLLKLAKKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY 648

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                    ++C +A EG   +  D + IE R+LA  + ++  L
Sbjct: 649 -------------------------KTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLL 683

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF   ED++  T    F     +     R+I K +   L Y                  
Sbjct: 684 EAFSNDEDIHAKTAIMIFG----ESNYHTRSIAKSINFGLIY------------------ 721

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                        +   +          +   + + +  + +  
Sbjct: 722 --------------------------GMGYKTLSQNLKIEAKLAKEYIEKYFKNFTSIKT 755

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            + ++    +Q                          N  +    GR   +         
Sbjct: 756 YFEKVKNEAKQ--------------------------NGFIKTLLGRKRYFDFENAKPMQ 789

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGYDIVLTVHDEIVCET 636
                        Y  +   + +Q  + DI+   M+   K       ++L +HDE++ E 
Sbjct: 790 ----------IAMYERESINSTLQGSAADIIKLAMIKIAKDLDENKRLILQIHDELIFEV 839

Query: 637 PDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            D   +  A     +M +       + LK     +K + 
Sbjct: 840 KDEFCDEFAKNASDIMENIVK--LKVKLKTSSSIAKNWG 876


>gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459]
 gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
 gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858]
 gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503]
 gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017]
          Length = 875

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 80/662 (12%), Positives = 181/662 (27%), Gaps = 144/662 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
                       +         +V ++ +E+   T V +++      +     + + I  
Sbjct: 333 IGLTVHSSQGTYFFTKETAESSEVFRKWVESDQ-TKVVYDAKKTMVAMNR---IGLAISG 388

Query: 93  W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                ++ +       ++     V      +  + +E             +     R+ P
Sbjct: 389 ITFDIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDE-----------AVYGKGAKRSTP 437

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
                             + + +   LE       +   E  L ++   +  +G  VD  
Sbjct: 438 EESIVAAHLARKAVAIADLEKRLVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTE 497

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +      L++ + SL      +    ++L   LF + GL     T+   +T 
Sbjct: 498 RLENMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 556

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL S         ++   R    +     +  L++  + +     T      ++TGR 
Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +    G K+  
Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 650

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +   
Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN-- 708

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    +                                   
Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +     +   +  V E   ++ +  ++  +     I                   
Sbjct: 727 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617
                  R     ++ +             R            +Q  + DI+ + M+   
Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
                 K    ++L VHDE++ E P+ +      +   +M +       +PLK +     
Sbjct: 812 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869

Query: 672 RY 673
            +
Sbjct: 870 TW 871


>gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896]
          Length = 872

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 105/689 (15%), Positives = 203/689 (29%), Gaps = 162/689 (23%)

Query: 17  TKCGICKYAEDVCVI------------LFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
           T+ G+    ED  ++               +  ++             +P+ LKE LE  
Sbjct: 310 TEIGLIAAIEDGNILTKRIVRLYLLADSITYAVEE-----------ENIPK-LKELLERE 357

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           +V I  +N   E T LK    + +P      + +                 ++   +K+ 
Sbjct: 358 NVFIYGNNLKREYTALKPY-GITLPKIS-FDSQLAQYILNPS--------EVEQEPEKIG 407

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS---- 180
               +       E       +             EY    + +      ++  +      
Sbjct: 408 IKYGMPIVSPNLEDLLGKGKKRMSFSMANRVQMDEYFAKILAIISHCKTKMLDMIQEEDT 467

Query: 181 ------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E  L  +   +   G  V+  +   L Q       + +QE+  L      +  
Sbjct: 468 KFLFEKIELPLMKVLGEMEYLGIAVNEDVLCELEQEFAKLIVQYEQEIYDLAG-EEFNIN 526

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF +  L +   T+   +T   +L       P   ++ + R   S+     +
Sbjct: 527 SPKQLGVVLFEKLQLPVIKKTKTGYSTGAEILEKLYDKHPIISKILSYRQ-VSKLQSTYV 585

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L+  +N   +   +      + TGR S      QN+P  +    EL            
Sbjct: 586 IGLLSLINPTSKRIHSTFNQTLTTTGRISSLEPNLQNIPVRTEMGREL------------ 633

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                        R   +A EG  LV AD + IE RVLA MA E+  ++ F    D++  
Sbjct: 634 -------------RKVFVAKEGYVLVDADYSQIELRVLAHMAQEKKMIEGFHGSMDIHTK 680

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F+V   +VTK+ R+  K +   + Y            +  LN+            
Sbjct: 681 TASEVFSVPVEEVTKELRSAAKAVNFGIVYG-----ISDFGLSNNLNI------------ 723

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           +     +  ++  +    + + +  E+ 
Sbjct: 724 ---------------------------TKKQAKEYIDLYFARYPGIKTYMDTIVKEVEE- 755

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                            GR     ++ ++   +    ++L    
Sbjct: 756 -------------------------LGYSTTLCGRRRYIPEIKSSNFIVKNMGKRL---- 786

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+   M          K   ++VL VHDE++ E  + D     
Sbjct: 787 -----AMNTPIQGSAADIIKIAMNRVFEWLKTEKIDAELVLQVHDELLLEVREDDAKYVR 841

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             +  LM     W+  +PLK +      +
Sbjct: 842 DKVIELMEGA--WSMDVPLKVDATIGDSW 868


>gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1]
 gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1]
          Length = 875

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 84/668 (12%), Positives = 188/668 (28%), Gaps = 145/668 (21%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
           +  ++  +    +     +  +   +     K+   +  +    +++      L+    +
Sbjct: 328 NGEIVGISMR--NGSGNYFFTLETALASDAFKKWAADEKMKKSVYDAKRSIVALRRQ-GV 384

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           ++        L+++       +        K      + G  +I      E       + 
Sbjct: 385 ELTGVE-FDLLIVSYILNPAESADDFAGVAK------KHGASVIE---SDEAVYGKGAKR 434

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRG 196
           K    E      E+      V  E+    E    +  +             +   +   G
Sbjct: 435 KVPEEEKLA---EHLARKANVVYELKSTCEEALKENDQYQLFTDLELPLAIILADMEYTG 491

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VDV     +   +     ++++++  L      +    ++L   LF +  L +   T+
Sbjct: 492 VGVDVDRLKEMKSELAERLDEMEKKIYELAG-EEFNINSPKQLGVILFEKLELPVIKKTK 550

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL   +        + + R    +     +  L++ ++ D     T      
Sbjct: 551 TGYSTSADVLEKLQSKHEIIDHILHYRQ-LGKLQSTYIEGLLKVIHEDSNKVHTRFNQAL 609

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   I SE 
Sbjct: 610 TQTGRLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFIPSEK 644

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +AG++  + AF  G D++  T    F+V    VT + R   
Sbjct: 645 NWLMFAADYSQIELRVLAHIAGDEKLIHAFNEGMDIHTKTAMDVFHVDADSVTSNMRRHA 704

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   +                G++    +                             
Sbjct: 705 KAVNFGIV--------------YGISDFGLSQ---------------------------- 722

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + +   +  V E  +++    +Q                      
Sbjct: 723 --SLGITRKEAGEFIQRYLDSYPGVQEYMDDIISEAKQ---------------------- 758

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
               N  +     R     ++ +             R            +Q  + DI+ +
Sbjct: 759 ----NGFVKTLLQRRRYIPEITSRNF---NLRSFAERTAMNTP------IQGSAADIIKK 805

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++             ++L VHDE++ E P+ +      +   +M +       +PLK 
Sbjct: 806 AMIDMAARLEKENLQTRLLLQVHDELIFEAPEDEIERLKEIVPEVMENAVE--LEVPLKV 863

Query: 666 EGYESKRY 673
           +      +
Sbjct: 864 DYSYGPTW 871


>gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175]
 gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365]
 gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262]
 gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194]
 gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220]
 gi|332312007|gb|EGJ25102.1| DNA polymerase I [Listeria monocytogenes str. Scott A]
          Length = 875

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 80/662 (12%), Positives = 181/662 (27%), Gaps = 144/662 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
                       +         +V ++ +E+   T V +++      +     + + I  
Sbjct: 333 IGLTVHSSQGTYFFTKETAESSEVFRKWVESDQ-TKVVYDAKKTMVAMNR---IGLAISG 388

Query: 93  W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                ++ +       ++     V      +  + +E             +     R+ P
Sbjct: 389 ITFDIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDE-----------AVYGKGAKRSTP 437

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
                             + + +   LE       +   E  L ++   +  +G  VD  
Sbjct: 438 EESIVAAHLARKAVAIADLEKRLVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTE 497

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +      L++ + SL      +    ++L   LF + GL     T+   +T 
Sbjct: 498 RLENMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 556

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL S         ++   R    +     +  L++  + +     T      ++TGR 
Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +    G K+  
Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 650

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +   
Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN-- 708

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    +                                   
Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +     +   +  V E   ++ +  ++  +     I                   
Sbjct: 727 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617
                  R     ++ +             R            +Q  + DI+ + M+   
Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
                 K    ++L VHDE++ E P+ +      +   +M +       +PLK +     
Sbjct: 812 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869

Query: 672 RY 673
            +
Sbjct: 870 TW 871


>gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
 gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF]
          Length = 950

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 96/656 (14%), Positives = 202/656 (30%), Gaps = 137/656 (20%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
           +++    W   +   +  +LK  LEN  +  + HN  F  ++LK   N+ +        +
Sbjct: 408 NNNDTYQWYL-NLTEVLSILKPILENIKIKKIGHNMKFIFSLLKQH-NIHLS-GPIFDVI 464

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR-- 155
           +        S  + +   L     K      +         ++ L  +N  + +      
Sbjct: 465 LELYVLYGTSNYQNIKRFLN----KTTILDHIFKFQQIYNNNKYLIKKNIRDIQLESSCS 520

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQ-------ELWYLDQTINDRGYCVDVALAHTLN 208
               Y      + + ++  ++  +  ++        L  +   I D G  +D    ++ +
Sbjct: 521 TQLIYAI--SNLHQILWTEIKQHNELKKIFINIEIPLISVLSRIEDYGVLIDKKFLYSHS 578

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLS 264
             ++ +   L  +   LT     +    ++L+  L+ +  L +   T     +T + VL 
Sbjct: 579 IKLNSQLNNLKTQAYQLTGSS-FNLDSPKQLQEILYNQEKLPIFKKTPHGAPSTSEEVLK 637

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              K       +   R   S+      N L+  +N       T      + TGR S    
Sbjct: 638 KLSKKHSIPKIILKYR-SLSKLKSTYTNKLISMINKKSNRIHTSYNQTRTSTGRLSSTNP 696

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  +    +                         +R   IA E   ++ AD + I
Sbjct: 697 NLQNIPNRNYDGRK-------------------------IRQAFIAPENSLIISADYSQI 731

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ +   +  F   +D++ TT +  F  +   VT +QR   K +   L Y   
Sbjct: 732 ELRIMAHLSRDLKLINDFLEEKDIHTTTASEIFVTSLHLVTGEQRQRAKTVNFGLIYGMT 791

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A        +  L+                                             +
Sbjct: 792 A-----FGLSKQLS---------------------------------------VTCQEAQ 807

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           +    + Q++  V +    +    ++                          N  +    
Sbjct: 808 KYVDRYFQRYPGVMQYMQYIKDYAKK--------------------------NGYVSTLD 841

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618
           GR L   D+ ++     +  +   R            +Q  + DI+   M++        
Sbjct: 842 GRKLYLPDIYSSNI---SQKKGAERSAINAP------MQGSAADIIKRAMISIDSWLQTD 892

Query: 619 KAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                +++ VHDE+V E  +T        +  LM     +   +PLK +    K +
Sbjct: 893 NIPVHMIMQVHDELVFEVNNTFVDIAVKQIRKLMEEC--FILNVPLKVDIGVGKNW 946


>gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
 gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548]
          Length = 879

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 96/669 (14%), Positives = 203/669 (30%), Gaps = 143/669 (21%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
            +Y     +        D P  + D   D       KE  E+ ++   + +   +  +L 
Sbjct: 327 DRYIHS-EIYKLGIKTTDTPTYIID--PDSDFVSKFKEIFEDEEIVKNSFDIKEDVVLLD 383

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               +++ +  +   +++        +   +         K+     L            
Sbjct: 384 K-LGINLKL-PYDDMMLMHYLIDPSRSSYDL---------KVLSQSYLDYEVKSPVDLLG 432

Query: 142 LYDRNKPNHREAWRLFGEY------CKGDVTVTREIFKRLEPLSSKEQEL----WYLDQT 191
              +        +   G Y         D     E       +    +E+      +   
Sbjct: 433 KGKKALKYQDLDFDELGNYLASGINAIEDSKEILEDKLDEYHMLDLYKEIEIKLSKVLAD 492

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G+  D  +   L + +D +  K+ +E+  L      +    ++L   LF +  L +
Sbjct: 493 MEIVGFVTDKKVLEDLKENIDKDIDKITEEIYELAGS-EFNINSTKQLGEVLFKDLDLPV 551

Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              T+   +T  +VL   +       ++   R    +     +  L +A++ DGR+R T 
Sbjct: 552 IKKTKTGFSTNAQVLEKLRDKHQIIPKIERYR-ELFKLRSTYIEGLEKAIDEDGRIRSTF 610

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
           +   A+ TGR S      QNLP  +                              +R   
Sbjct: 611 RQNIAA-TGRLSSQDPNLQNLPIKTDEGR-------------------------LIRKAF 644

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
            A EGK L+ AD + IE R+LA ++G++  + AF+ G D++  T ++ F+    +VTK Q
Sbjct: 645 RAEEGKILIDADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTASKVFHTDLDKVTKRQ 704

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R+  K +   + Y              GL+                              
Sbjct: 705 RSEAKAVNFGIIYGIS---------DYGLS------------------------------ 725

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          +     +   +  + E  + + +  ++                  
Sbjct: 726 -----QNLNIPRKEAKEYIDNYMASYPSIKEYMDSIVEKAKE------------------ 762

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                   +  +     R     ++ +    + +  ++               +Q  + D
Sbjct: 763 --------DGYVETLFKRRRYVPEINSRNFNVRSFGQR---------VALNTPIQGTAAD 805

Query: 609 ILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGL 661
           I+   M+   K          IVL +HDEI+ E  ++  +    +L   M +       +
Sbjct: 806 IIKIAMIETDKNLKKAGLDAKIVLQIHDEIILEADESSKDEAIKILRESMENATD--LEV 863

Query: 662 PLKAEGYES 670
           PL  +    
Sbjct: 864 PLIVDIDTG 872


>gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119]
 gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119]
          Length = 878

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 102/663 (15%), Positives = 208/663 (31%), Gaps = 131/663 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81
           Y +D  ++ F F +D     + D  +    P+ L + LEN +   V +++   F   V+ 
Sbjct: 330 YLKD-DILKFGF-YDKERYIVVDADNIKDYPE-LIKWLENENSKKVVYDAKKTF---VIA 383

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              N++I  +     ++ +        +  V     +++      KE ++ + KG+    
Sbjct: 384 HRLNINIQ-NIVFDAMLASYIFDPSRTIDDV--YSVVTNYHQTYVKEDVSIYGKGKKRHV 440

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
                   H  +     +  K  +    E  +++  L   E  L  +   + + G   DV
Sbjct: 441 PDTEILNTHIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDV 500

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                + Q +  +   L Q +         +    ++L   LF    L +   T+   +T
Sbjct: 501 NDLQHMQQELQEKLELLVQRIHDAAG-EEFNINSPKQLGVVLFETLKLPVIKKTKTGYST 559

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    +   R   ++     +  L + +++D R+        A +TGR
Sbjct: 560 AVDVLEQLQNEHPIINDILEYRQ-LAKLQSTYVEGLQKVISNDKRIHTRFNQTLA-QTGR 617

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377
            S      QN+P       +                         +R     S E   ++
Sbjct: 618 LSSVDPNLQNIPIRLEEGRK-------------------------IRKAFKPSSEDSVIL 652

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +  +    +AF  G+D++  T  + F V   +VT   R   K +  
Sbjct: 653 SADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNF 712

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y            +  LN+      +  +     +   + +   + ++   +   + 
Sbjct: 713 GIVYGIS-----DYGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVET 767

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                                                       +RR +P +  +     
Sbjct: 768 L-----------------------------------------LHRRRYIPDITSRNFNLR 786

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                              R+ +NT                   +Q  + DI+   M+  
Sbjct: 787 GF---------------AERTAMNT------------------PIQGSAADIIKLAMVEF 813

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYES 670
            K          ++L VHDE++ E P ++    S+    +M         +PLK +    
Sbjct: 814 DKQVQHTSYKAKLLLQVHDELIFEVPKSEVEEFSLFVEDIMEHALD--LDVPLKVDSNYG 871

Query: 671 KRY 673
             +
Sbjct: 872 PTW 874


>gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23]
 gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23]
          Length = 875

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 80/662 (12%), Positives = 180/662 (27%), Gaps = 144/662 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
                       +         +  +E +E+   T V +++      +     + + I  
Sbjct: 333 IGLTVHSSQGTYFFTKETAENSEAFREWVESEQ-TKVVYDAKKTMVAMNR---IGLAISG 388

Query: 93  W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                ++ +       ++     V      +  + +E             +     R+ P
Sbjct: 389 ITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AVYGKGAKRSTP 437

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
                             + + +   LE       +   E  L ++   +  +G  VD  
Sbjct: 438 EESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTE 497

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +      L++ + SL      +    ++L   LF + GL     T+   +T 
Sbjct: 498 RLENMKVELAGRLKTLEESIHSLAG-EAFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 556

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL S         ++   R    +     +  L++  + +     T      ++TGR 
Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +    G K+  
Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 650

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +   
Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN-- 708

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    +                                   
Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +     +   +  V E   ++ +  ++  +     I                   
Sbjct: 727 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617
                  R     ++ +             R            +Q  + DI+ + M+   
Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
                 K    ++L VHDE++ E P+ +      +   +M +       +PLK +     
Sbjct: 812 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869

Query: 672 RY 673
            +
Sbjct: 870 TW 871


>gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
 gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41]
          Length = 875

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 87/648 (13%), Positives = 185/648 (28%), Gaps = 125/648 (19%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           ++  A   D    +            +L+  LE++       +S   +  LK    + + 
Sbjct: 331 LLGMALS-DGTKTQYIPFEIAAK-SDILRRWLEDSSKIKYMSDSKASKAALKRA-GIQLA 387

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
                  ++ +  N    +   V    +       +  E +  + KG             
Sbjct: 388 GVD-FDLVLASYINNPGLSGDDVATLARELGYYDVQADETV--YGKGAKRAVPEIDKLAQ 444

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           H           +  +    +  ++ +     E  L  +   +   G  V+ A    + Q
Sbjct: 445 HVSRKAYAVWSLQPKLEALLKENEQFDLYKELELPLAAILGEMESEGITVNRATLEKMGQ 504

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
            ++ +   L+QE+ +       +    ++L   LF + GL +   T+   +T   VL   
Sbjct: 505 ELNDKLVVLEQEIYAEAG-ETFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKL 563

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           K        +   R    +     +  L++ ++       T      + TGR S      
Sbjct: 564 KSEHAIIEYILLYRQ-LGKLQSTYIEGLLKEIHEKDSKVHTRFQQALTATGRLSSTDPNL 622

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIE 385
           QN+P       +                         +R   +   E   L  AD + IE
Sbjct: 623 QNIPIRLEEGRK-------------------------IRQAFVPSKEDWILFSADYSQIE 657

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA M+ ++  ++AF  G D++  T    F+V+  +V  + R   K +   +      
Sbjct: 658 LRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEEEVDSNMRRAAKAVNFGIV----- 712

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++    +  +                                       
Sbjct: 713 ---------YGISDYGLSQNLDI------------------------------TRKEAAT 733

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
             + +      V +  +++    +    NG                              
Sbjct: 734 FIEKYFASFPGVKQYMDDI---VQNAKFNGYVTTILN----------------------- 767

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
           R     D+ ++            R            +Q  + DI+ + M++         
Sbjct: 768 RRRYLPDITSSNF---NLRSFAERTAMNTP------IQGSAADIIKKAMIDMDARLKKEN 818

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
               ++L VHDE++ E P  +      +   +M +       +PLK +
Sbjct: 819 MQAKLLLQVHDELIFEAPKEEIAMLEKIVPEVMENAIE--LSVPLKVD 864


>gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB]
          Length = 878

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 86/676 (12%), Positives = 176/676 (26%), Gaps = 159/676 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERT---VLK 81
            D  ++  A   +      +    +  +        L +         S F+     V  
Sbjct: 330 HDAPIVGIALVNEHGR---FSLRAEMALADPQFVAWLADETKKK----SMFDAKRASVAL 382

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               +++        L+ A           V         KM++ + +            
Sbjct: 383 KWKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA- 435

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYL 188
              R+ P+                     I+    P   +             EQ L  +
Sbjct: 436 --KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDELLIKLEQPLATI 486

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  VD      +   +  +   ++Q +  L      +    ++L   LF +  
Sbjct: 487 LAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELAGQ-EFNINSPKQLGIILFEKLQ 545

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+   +T   VL            + + R    +     +  L++ ++ D    
Sbjct: 546 LPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHHDTGKV 604

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T+     ++TGR S      QN+P       +                         +R
Sbjct: 605 HTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IR 639

Query: 366 SCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
              +    G  +  AD + IE RVLA +A +   ++AF    D++  T    F+V+  +V
Sbjct: 640 QAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEV 699

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R   K +                    G++    A                     
Sbjct: 700 TATMRRQAKAVNF--------------GIVYGISDYGLAQ-------------------- 725

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                  + +      V      +    ++  + G         
Sbjct: 726 ----------NLNITRKEAAEFIERYFASFPGVKRYMETI---VQEAKQKGYVTTLLH-- 770

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R   + D+ +             R            +Q 
Sbjct: 771 ---------------------RRRYFPDITSRNF---NVRSFAERTAMNTP------IQG 800

Query: 605 VSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+ + M++        +    ++L VHDE++ E P  +      L   +M      
Sbjct: 801 SAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE- 859

Query: 658 AKGLPLKAEGYESKRY 673
              +PLK + +    +
Sbjct: 860 -LRVPLKVDYHYGPTW 874


>gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99]
          Length = 885

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 80/662 (12%), Positives = 180/662 (27%), Gaps = 144/662 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
                       +         +  +E +E+   T V +++      +     + + I  
Sbjct: 343 IGLTVHSSQGTYFFTKETAENSEAFREWVESEQ-TKVVYDAKKTMVAMNR---IGLAISG 398

Query: 93  W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                ++ +       ++     V      +  + +E             +     R+ P
Sbjct: 399 ITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AVYGKGAKRSTP 447

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
                             + + +   LE       +   E  L ++   +  +G  VD  
Sbjct: 448 EESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTE 507

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +      L++ + SL      +    ++L   LF + GL     T+   +T 
Sbjct: 508 RLENMKVELAGRLKTLEESIHSLAG-EAFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 566

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL S         ++   R    +     +  L++  + +     T      ++TGR 
Sbjct: 567 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 625

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +    G K+  
Sbjct: 626 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 660

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +   
Sbjct: 661 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN-- 718

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    +                                   
Sbjct: 719 ------------FGIVYGISDYGLSQ------------------------------NLGI 736

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +     +   +  V E   ++ +  ++  +     I                   
Sbjct: 737 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 777

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617
                  R     ++ +             R            +Q  + DI+ + M+   
Sbjct: 778 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 821

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
                 K    ++L VHDE++ E P+ +      +   +M +       +PLK +     
Sbjct: 822 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 879

Query: 672 RY 673
            +
Sbjct: 880 TW 881


>gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4]
 gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Thermoanaerobacter tengcongensis MB4]
          Length = 871

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 94/678 (13%), Positives = 198/678 (29%), Gaps = 146/678 (21%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76
                     +  V   AF FD       D        + L++  E  D   V+H    +
Sbjct: 315 KNVAFYPLIYEGDVKKIAFSFD-GTTLYSDVER----LEDLRKIFEREDAEFVSHEIK-D 368

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
             V  +   ++    +++ T ++A       +   +   LK   +      E        
Sbjct: 369 FLVKLSYKGIECK-SKYLDTAIMAYLLNPSESNYDLERVLKRYLKVDILSHE-------- 419

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----------SSKEQELW 186
                     +     +  +  EY  G  +   E+  +L                E  L 
Sbjct: 420 -EVFGKGKDRRRYEEVSEEVMAEYICGRCSHLFELKDKLMAFIEEMDMKKLLLEIEMPLV 478

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +++   G+ +D  +   L++ +D   +++  ++         +    ++L  +LF +
Sbjct: 479 EVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGYQ-FNVNSPKQLGEFLFEK 537

Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
             L +   T+   +T   VL           ++   R   ++     +   +  M+ + R
Sbjct: 538 LNLPVIKKTKTGYSTDSEVLEQLTAYNDIVSEIIEYRQ-LTKLKSTYIEGFLPLMDENDR 596

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +    + + A+ TGR S      QN+P                                 
Sbjct: 597 VHSNFKQMVAA-TGRISSTEPNLQNIPVREEFGR-------------------------Q 630

Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   I   +   +V AD + IE RVLA ++ ++  ++AF   ED+++ T +  F V P 
Sbjct: 631 IRRAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQ 690

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT + R                          G++                        
Sbjct: 691 NVTPEMRRAA--------------KVVNFGIIYGISD----------------------- 713

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                     A +        +     + +K+  V E   ++ +  ++            
Sbjct: 714 -------YGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKE------------ 754

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                         N  +     R     ++ +      T   Q  R            +
Sbjct: 755 --------------NGYVTTIMNRRRYIPEINSRNF---TQRSQAERLAMNTP------I 791

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655
           Q  + DI+   M+   +          ++L VHDE+V +T   +      +    M +  
Sbjct: 792 QGSAADIIKMAMVKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVI 851

Query: 656 SWAKGLPLKAEGYESKRY 673
                +PL  E      +
Sbjct: 852 K--LKVPLVVEIGVGPNW 867


>gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
 gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2]
          Length = 878

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 81/664 (12%), Positives = 175/664 (26%), Gaps = 135/664 (20%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 330 HDAPIVGIALV--NEHGRFFMRPETALADSQFLAWLADETKKK----SMFDAKRAVVALK 383

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++        L+ A           +    K+   +     E +  + KG      
Sbjct: 384 WKGIELRGVA-FDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAV--YGKGVKRSLP 440

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            ++    H           +       ++    +     + E     +   +   G  VD
Sbjct: 441 DEQTLAEHLVRKAAAIWALEQ--PFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +   +  +   ++Q +  L      +    ++L   LF +  L +   T+   +
Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYS 557

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL            + + R    +     +  L++ +  D     T+     ++TG
Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTGKVHTMFNQALTQTG 616

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376
           R S      QN+P       +                         +R   +       +
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPDWLI 651

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             AD + IE RVLA +A +   ++AF+   D++  T    F+V+  +VT + R   K + 
Sbjct: 652 FAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVN 711

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    A                                 
Sbjct: 712 F--------------GIVYGISDYGLAQ------------------------------NL 727

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                      + +      V +         ++  + G                     
Sbjct: 728 NITRKEAAEFIERYFASFPGVKQYM---ENIVQEAKQKGYVTTLLH-------------- 770

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    R     D+ +             R            +Q  + DI+ + M++
Sbjct: 771 ---------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGSAADIIKKAMID 812

Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                   +    ++L VHDE++ E P  +      L   +M    +    +PLK + + 
Sbjct: 813 LAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVT--LRVPLKVDYHY 870

Query: 670 SKRY 673
              +
Sbjct: 871 GPTW 874


>gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16]
 gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus]
 gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16]
          Length = 876

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 81/664 (12%), Positives = 175/664 (26%), Gaps = 135/664 (20%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 328 HDAPIVGIALV--NEHGRFFMRPETALADSQFLAWLADETKKK----SMFDAKRAVVALK 381

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++        L+ A           +    K+   +     E +  + KG      
Sbjct: 382 WKGIELRGVA-FDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAV--YGKGVKRSLP 438

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            ++    H           +       ++    +     + E     +   +   G  VD
Sbjct: 439 DEQTLAEHLVRKAAAIWALEQ--PFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 496

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +   +  +   ++Q +  L      +    ++L   LF +  L +   T+   +
Sbjct: 497 TKRLEQMGSELAEQLRAIEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYS 555

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL            + + R    +     +  L++ +  D     T+     ++TG
Sbjct: 556 TSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTGKVHTMFNQALTQTG 614

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376
           R S      QN+P       +                         +R   +       +
Sbjct: 615 RLSSAEPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPDWLI 649

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             AD + IE RVLA +A +   ++AF+   D++  T    F+V+  +VT + R   K + 
Sbjct: 650 FAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVN 709

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    A                                 
Sbjct: 710 F--------------GIVYGISDYGLAQ------------------------------NL 725

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                      + +      V +         ++  + G                     
Sbjct: 726 NITRKEAAEFIERYFASFPGVKQYM---ENIVQEAKQKGYVTTLLH-------------- 768

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    R     D+ +             R            +Q  + DI+ + M++
Sbjct: 769 ---------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGSAADIIKKAMID 810

Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                   +    ++L VHDE++ E P  +      L   +M    +    +PLK + + 
Sbjct: 811 LAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVT--LRVPLKVDYHY 868

Query: 670 SKRY 673
              +
Sbjct: 869 GPTW 872


>gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
 gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC
           29799]
          Length = 889

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 100/633 (15%), Positives = 193/633 (30%), Gaps = 134/633 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSA---LKAV 112
           + +AL   D+    H+     T+L       +        T + A           L+ +
Sbjct: 370 VLKALFAADIKKNTHDVK---TLLSRLLEEGVEGDGFVFDTAIAAYLLAPTDGSYELEKL 426

Query: 113 G-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-TRE 170
           G         K ++       F        +      +      L          +   +
Sbjct: 427 GITYFNQEFAKAKDTYLAPDAFSPLADQTAVLGGMLSHCALIGALKKVLAPRLEELGMHQ 486

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++         E  L  +   +   G  VD         ++D        E+  L     
Sbjct: 487 LYY------DIELPLCQVLSAMEHAGMLVDRKALSEFGDMLDERIAADQAEIYELAG-ET 539

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF + GL     T+   +T   VL   +   P   ++   R   ++  
Sbjct: 540 FNINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGQHPIIDKILEYRQY-TKLK 598

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              ++ L + +  DGR+  +      + TGR S      QN+P  +              
Sbjct: 599 STYVDGLGKVIAPDGRIHTSF-QNTVTATGRLSSTEPNLQNIPVRTE------------- 644

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                       +   +R   +A  GK LV AD + IE R+LA +AG++  ++AF TGED
Sbjct: 645 ------------LGAELRKMFVAPAGKVLVDADYSQIELRLLAHIAGDEHMIEAFRTGED 692

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T A+ F V   QVTK  R+  K +   + Y              G++  + +  + 
Sbjct: 693 IHTVTAAQVFGVPVDQVTKHMRSSAKAVNFGIVY--------------GISAFSLSQDIG 738

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
             +                                 +   + +  + S V     ++   
Sbjct: 739 VPTY------------------------------EAKEYIEKYFARFSGVHAYMTDVVNR 768

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            +                           +  +    GR     ++ ++      T    
Sbjct: 769 AKT--------------------------DGYVSTLFGRRRWLPELKSSNF---NTRSFG 799

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDE 641
            R            +Q  + DI+   M++             ++L VHDE++ E P+ + 
Sbjct: 800 ERVALNMP------IQGTAADIMKLAMLHVHSRLREEGLQARLILQVHDELIVECPEEEA 853

Query: 642 FNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                +L   M S    A  +PL A+    + +
Sbjct: 854 ETVKALLSREMESVAQLA--VPLIADAAAGRSW 884


>gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/676 (13%), Positives = 176/676 (26%), Gaps = 159/676 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERT---VLK 81
            D  ++  A   +      +    +  +        L +         S F+     V  
Sbjct: 330 HDAPIVGIALVNEHGR---FSLRAEMALADPQFVAWLADETKKK----SMFDAKRASVAL 382

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               +++        L+ A           V         KM++ + +            
Sbjct: 383 KWKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA- 435

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYL 188
              R+ P+                     I+    P   +             EQ L  +
Sbjct: 436 --KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDELLIKLEQPLATI 486

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  VD      +   +  +   ++Q +  L      +    ++L   LF +  
Sbjct: 487 LAEMEFTGVKVDTKRLEQMGSELAEQLGAIEQRIYELAGQ-EFNINSPKQLGIILFEKLQ 545

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+   +T   VL            + + R    +     +  L++ ++ D    
Sbjct: 546 LPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHHDTGKV 604

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T+     ++TGR S      QN+P       +                         +R
Sbjct: 605 HTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IR 639

Query: 366 SCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
              +    G  +  AD + IE RVLA +A +   ++AF    D++  T    F+V+  +V
Sbjct: 640 QAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEV 699

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R   K +                    G++    A                     
Sbjct: 700 TATMRRQAKAVNF--------------GIVYGISDYGLAQ-------------------- 725

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                  + +      V      + Q  +Q    G         
Sbjct: 726 ----------NLNITRKEAAEFIERYFASFPGVKRYMETIVQEAKQ---KGYVTTLLH-- 770

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R   + D+ +             R            +Q 
Sbjct: 771 ---------------------RRRYFPDITSRNF---NVRSFAERTAMNTP------IQG 800

Query: 605 VSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+ + M++        +    ++L VHDE++ E P  +      L   +M      
Sbjct: 801 SAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE- 859

Query: 658 AKGLPLKAEGYESKRY 673
              +PLK + +    +
Sbjct: 860 -LRVPLKVDYHYGPTW 874


>gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
 gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86]
          Length = 948

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 94/694 (13%), Positives = 205/694 (29%), Gaps = 149/694 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLKE 59
           +  D ET     L          +  ++  +F F+           +      +    K 
Sbjct: 376 VCFDTETTGIDAL----------NAQLVGMSFSFEKGKAFYVPFPENQEDAQVLADKFKP 425

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALK 117
             E+  +  +  N  ++  +L   + + I   +   T++            +  + E   
Sbjct: 426 FFESESIEKIGQNIKYDLKILS-HYGVQIK-GKLFDTMIAHYLINPDMRHNMDVLSETY- 482

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 +  ++LI +              K     +     EY   D  +T ++ +   P
Sbjct: 483 -LKYSPKSIEDLIGK---------KGKNQKSMRDVSLEEIKEYAAEDADITYQLKQNFSP 532

Query: 178 LSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           +  K +           L  +   +   G  +DV    +++  + +E   L+Q++   T 
Sbjct: 533 ILDKAETKKLFEEIEIPLIPVLAAMELEGINLDVPFLKSMSAEMALESNALEQKIYE-TA 591

Query: 228 GLVSSSRCLEKLKTWLFLETGL------HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           G   +    ++L   LF +  +        +     T + +LS      P    +   R 
Sbjct: 592 GEKFNLASPKQLGDVLFDKMKIGGAKQKKTKTGQYATGEEILSYLANDNPIVKDILEWRQ 651

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     ++ L   ++       T      + TGR S      QN+P  +        
Sbjct: 652 MV-KLQSTYIDALPNQVDKKTGRVHTDYMQTVAATGRLSSNNPNLQNIPVRTERGR---- 706

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +R   I   E   L+ AD + IE R++A ++GE+  + 
Sbjct: 707 ---------------------LIRKAFIPRNENYTLISADYSQIELRIIAALSGEENMIA 745

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+  +D++ +T A+ FNVA   VTK+QR+  K +   + Y   A        +   +L+
Sbjct: 746 AFQNNQDIHKSTAAKVFNVALEDVTKEQRSNAKTVNFGIIYGVSA-----FGLSNQTSLS 800

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   ++    +   +++     +   E+      +G    R  K     +  V   
Sbjct: 801 RKESAELIDAYYATYPKLKSYMSNQVDFARENGYVQTVLGR--RRYLKDINSANMMVKS- 857

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +        G A    K   +                         ++    +  
Sbjct: 858 --GAERNAVNAPIQGSAADIIKIAMI-------------------------NIHKKLTQE 890

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           N  ++                            ++                +V +  +++
Sbjct: 891 NWQSKM---------------------------LLQVHDE-----------LVFDVHNSE 912

Query: 641 EFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 M+ + M +       +PL  E    K +
Sbjct: 913 LEKIQPMIKYEMENAFK--IDVPLDVEIGIGKNW 944


>gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 942

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 95/662 (14%), Positives = 181/662 (27%), Gaps = 147/662 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACF-- 84
             +   A                  +    ++  L + D   VA    F+   +      
Sbjct: 408 AEIRGMAVAT-PKRAYYV--RFGERLELSDVRPWLVS-DRPKVA----FDLKSMAFALDA 459

Query: 85  -NLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             + +     W    + A            GE         E G+EL          E  
Sbjct: 460 HGIGLTSECGWQDVKLAAYLLNP-----QDGEVELSDVFARERGQEL------PAWEEGE 508

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            ++             E        T  + +        E  L ++   +   G+ V+  
Sbjct: 509 REKWLAYTASQLPPLFESLA----YTIRMQEMERLYQEVELPLAFVLAKMEITGFYVNRE 564

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
                 Q +     ++ QE+  L      +    ++L   LF + GL     T+   +T 
Sbjct: 565 KLVAFGQELTERIKRITQEIYDLAGTS-FNLNSPKQLGEILFDKLGLPALKKTKTGYSTS 623

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL     +     ++ + R+  ++     +  L++ +  +     T      + TGR 
Sbjct: 624 ADVLEKLAPMHEIVQKILDYRL-LAKLQSTYVEGLLKVIRKETGRVHTRFHQTLTATGRL 682

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378
           S      QN+P        L                         R     + +   +  
Sbjct: 683 SSSEPNLQNIPIRLEEGRRL-------------------------RQVFEPTYKDWVIFA 717

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA ++G++  + AF    D++  T A  F V P QVT   R   K +   
Sbjct: 718 ADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNF- 776

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    A                                   
Sbjct: 777 -------------GIVYGISDFGLAQ------------------------------NLNI 793

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +R  +++ +K   V    +E+    +Q  E G                       
Sbjct: 794 PQKEAKRFIESYFEKFPGVKRYMDEI---VKQARERGYVTTLMN---------------- 834

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R     D+ +             R            +Q  + D++   M+   
Sbjct: 835 -------RRRYLPDIHSRN---YQLRSFAERTAMNTP------IQGSAADLIKLAMVRID 878

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESK 671
           +A         ++L VHDE++ E P  +     +L    M +  +    +PLK +     
Sbjct: 879 RAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVRDNMENAMT--LSVPLKVDTAYGP 936

Query: 672 RY 673
            +
Sbjct: 937 TW 938


>gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus]
 gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/675 (12%), Positives = 175/675 (25%), Gaps = 157/675 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 330 HDAPIVGIALV--NEHGRFFLRAEMALADPQFVAWLADETKKK----SMFDAKRASVALK 383

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++        L+ A           V         KM++ + +             
Sbjct: 384 WKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA-- 435

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYLD 189
             R+ P+                     I+    P   +             EQ L  + 
Sbjct: 436 -KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDELLIKLEQPLATIL 487

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  VD      +   +  +   ++Q +  L      +    ++L   LF +  L
Sbjct: 488 AEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELAGQ-EFNINSPKQLGIILFEKLQL 546

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL            + + R    +     +  L++ ++ D     
Sbjct: 547 PVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHHDTGKVH 605

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T+     ++TGR S      QN+P       +                         +R 
Sbjct: 606 TMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IRQ 640

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             +    G  +  AD + IE RVLA +A +   ++AF    D++  T    F+V+  +VT
Sbjct: 641 AFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVT 700

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R   K +                    G++    A                      
Sbjct: 701 ATMRRQAKAVNF--------------GIVYGISDYGLAQ--------------------- 725

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                 + +      V      +    ++  + G          
Sbjct: 726 ---------NLNITRKEAAEFIERYFASFPGVKRYMETI---VQEAKQKGYVTTLLH--- 770

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                               R   + D+ +             R            +Q  
Sbjct: 771 --------------------RRRYFPDITSRNF---NVRSFAERTAMNTP------IQGS 801

Query: 606 SRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+ + M++        +    ++L VHDE++ E P  +      L   +M       
Sbjct: 802 AADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE-- 859

Query: 659 KGLPLKAEGYESKRY 673
             +PLK + +    +
Sbjct: 860 LRVPLKVDYHYGPTW 874


>gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
 gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 87/662 (13%), Positives = 188/662 (28%), Gaps = 135/662 (20%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERT---VLKA 82
             +I F+   D                   V K   E+           ++     V   
Sbjct: 331 ADIIGFSVANDKGNFF----FSKETALKSDVFKTWAEDETKKKTV----YDAKRSEVSLR 382

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              + +         + +        ++ +    K  +      +   A + KG      
Sbjct: 383 HHGVHLKGAD-FDLYIASYLINPSQTIEDMASIAK--NHGYNAIQSDEAFYGKGAKRRIP 439

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            ++    H           K  +    +  ++ E     E  L  +   +   G  VD+ 
Sbjct: 440 EEKELAGHLARKAAALMTLKEKLDSELKENQQSELFYDLEMPLSLILADMESTGIKVDLE 499

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
              T+ Q +  +  ++++ +  L      +    ++L   LF + GL     T+   +T 
Sbjct: 500 RLKTMGQDLLSKLDEIEKRIHELAG-EAFNINSPKQLGVILFEKLGLPAIKKTKTGYSTS 558

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +        + + R    +     +  L++ +N +     T      ++TGR 
Sbjct: 559 ADVLEKLENSHEIIRDILHYRQ-LGKLQSTYIEGLLKVVNYETGKVHTRFNQALTQTGRL 617

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +    G  +  
Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPGWAIFA 652

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF    D++  T    F+V   +VT + R   K +   
Sbjct: 653 ADYSQIELRVLAHIANDEKLIEAFIEDMDIHTKTAMEVFHVNANEVTSNMRRHAKAVNFG 712

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +         +   E +   + +   +  +  +       
Sbjct: 713 IVYGIS-----DYGLSQSLGITRKEAGKFIDRYLESYPGVKQYMDDIIHDAKQKGYVSTL 767

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 768 -----------------------------------------LHRRRYLPEITSRNFNLRS 786

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617
                             R+ +NT                   +Q  + DI+ + M++  
Sbjct: 787 F---------------AERTAMNT------------------PIQGSAADIIKKAMIDMA 813

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
                 +    ++L VHDE++ E P+ +      +   +M +       +PLK +     
Sbjct: 814 DRLRKEELKARLLLQVHDELIFEVPEDEIETLKKIVPDVMENAVE--LKVPLKVDYSFGP 871

Query: 672 RY 673
            +
Sbjct: 872 TW 873


>gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
 gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1]
          Length = 875

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/647 (13%), Positives = 186/647 (28%), Gaps = 125/647 (19%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           +  A   D    +     +       L+  LE+        +S   +  LK    + +  
Sbjct: 332 LGIALS-DGIKTQYIPFDNAAK-SDTLRRWLEDATKIKYMSDSKAAQASLKRA-GIQLAG 388

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                 L+ +  N    +   +    +       +  E +  + KG             H
Sbjct: 389 VD-FDLLLASYINNPALSGDDIATLARELGYYDVQADEAV--YGKGAKRAIPDLDQLAQH 445

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                      +  +    +  ++ +   + E  L  +   +   G  V+ A    + Q 
Sbjct: 446 VSRKAFAVWSLQPKLEALLKDNEQFDLYKNLELPLAGILGEMESEGITVNRATLEKMGQE 505

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
           ++ +   ++QE+ +       +    ++L   LF + GL +   T+   +T   VL   +
Sbjct: 506 LNDKLVVIEQEIYAEAG-ETFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKLQ 564

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   +   R    +     +  L++ ++       T      + TGR S      Q
Sbjct: 565 SEHAIIEHILLYRQ-LGKLQSTYIEGLLKEIHESNSKVHTRFQQALTATGRLSSTDPNLQ 623

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEA 386
           N+P       +                         +R   +   E   L  AD + IE 
Sbjct: 624 NIPIRLEEGRK-------------------------IRQAFVPSKEDWILFSADYSQIEL 658

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA M+ +Q  ++AF  G D++  T    F+V+  +V  + R   K +   +       
Sbjct: 659 RVLAHMSEDQNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIV------ 712

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++    +  +                                        
Sbjct: 713 --------YGISDYGLSQNLDI------------------------------TRKEAANF 734

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + +      V +  +++    +    NG                              R
Sbjct: 735 IEKYFASFPGVKQYMDDI---VQNAKFNGYVTTILN-----------------------R 768

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KA 620
                D+ ++            R            +Q  + DI+ + M++        K 
Sbjct: 769 RRYLPDITSSNF---NLRSFAERTAMNTP------IQGSAADIIKKAMIDMDARLKKEKM 819

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
              ++L VHDE++ E P  +      +   +M +    A  +PLK +
Sbjct: 820 QAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENAIELA--VPLKVD 864


>gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus]
          Length = 878

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/675 (12%), Positives = 175/675 (25%), Gaps = 157/675 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 330 HDAPIVGIALV--NEHGRFFLRAEMALADPQFVAWLADETKKK----SMFDAKRASVALK 383

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++        L+ A           V         KM++ + +             
Sbjct: 384 WKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA-- 435

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYLD 189
             R+ P+                     I+    P   +             EQ L  + 
Sbjct: 436 -KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDELLIKLEQPLATIL 487

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  VD      +   +  +   ++Q +  L      +    ++L   LF +  L
Sbjct: 488 AEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELAGQ-EFNINSPKQLGIILFEKLQL 546

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL            + + R    +     +  L++ ++ D     
Sbjct: 547 PVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHHDTGKVH 605

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T+     ++TGR S      QN+P       +                         +R 
Sbjct: 606 TMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IRQ 640

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             +    G  +  AD + IE RVLA +A +   ++AF    D++  T    F+V+  +VT
Sbjct: 641 AFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVT 700

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R   K +                    G++    A                      
Sbjct: 701 ATMRRQAKAVNF--------------GIVYGISDYGLAQ--------------------- 725

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                 + +      V      +    ++  + G          
Sbjct: 726 ---------NLNITRKEAAEFIERYFASFPGVKRYMETI---VQEAKQKGYVTTLLH--- 770

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                               R   + D+ +             R            +Q  
Sbjct: 771 --------------------RRRYFPDITSRNF---NVRSFAERTAMNTP------IQGS 801

Query: 606 SRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+ + M++        +    ++L VHDE++ E P  +      L   +M       
Sbjct: 802 AADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE-- 859

Query: 659 KGLPLKAEGYESKRY 673
             +PLK + +    +
Sbjct: 860 LRVPLKVDYHYGPTW 874


>gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici]
          Length = 878

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/675 (12%), Positives = 173/675 (25%), Gaps = 157/675 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 330 HDAPIVGIALV--NEHGRFFLRAEMALADPQFVAWLADETKKK----SMFDAKRASVALK 383

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++        L+ A           V         KM++ + +             
Sbjct: 384 WKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA-- 435

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYLD 189
             R+ P+                     I+    P   +             EQ L  + 
Sbjct: 436 -KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDELLIKLEQPLATIL 487

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  VD      +   +  +   ++Q +  L      +    ++L   LF +  L
Sbjct: 488 AEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYELAGQ-EFNINSPKQLGIILFEKLQL 546

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL            + + R    +     +  L++ ++ D     
Sbjct: 547 PVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHHDTGKVH 605

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T+     ++TGR S      QN+P       +                         +R 
Sbjct: 606 TMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IRQ 640

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             +    G  +  AD + IE RVLA +A +   ++AF    D++  T    F+V+  +VT
Sbjct: 641 AFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVT 700

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R   K +                    G++    A                      
Sbjct: 701 ATMRRQAKAVNF--------------GIVYGISDYGLAQ--------------------- 725

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                 + +      V           ++  + G          
Sbjct: 726 ---------NLNITRKEAAEFIERYFASFPGVKRYM---ENIVQEAKQKGYVTTLLH--- 770

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                               R     D+ +             R            +Q  
Sbjct: 771 --------------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGS 801

Query: 606 SRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+ + M++        +    ++L VHDE++ E P  +      L   +M       
Sbjct: 802 AADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVE-- 859

Query: 659 KGLPLKAEGYESKRY 673
             +PLK + +    +
Sbjct: 860 LRVPLKVDYHYGPTW 874


>gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b]
 gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b]
          Length = 864

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 90/655 (13%), Positives = 182/655 (27%), Gaps = 134/655 (20%)

Query: 33  FAFGFDDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
                         D        + +KE +E+   T +  ++      LK      + + 
Sbjct: 326 IGVAIASERGVTIGDVTLLED--ERVKEWIEDETKTTICLDAKQTIIQLKRHQ---LALR 380

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            +   LV      L    +L ++        ++ E        + KG   +   +     
Sbjct: 381 GYEDLLVAGYLLNLSGGTSLSSIAAHFTYPLEEDETV------YGKGAKIKVPEENVFHA 434

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           H              V    +  ++ E   + E+ L  +   +   G  V+V     +  
Sbjct: 435 HLAEKAYAIYTLFERVVSELKENEQTELYEALEKPLVSVLAEMEWAGIHVNVETLQHMET 494

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
            +      L+  +  L      +    ++L   LF +  L     T+   +T   VL   
Sbjct: 495 DLRERLNALEITIHELAG-EPFNINSPKQLGVVLFEKLSLPPVKKTKTGYSTAADVLEKL 553

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
             L P   ++ + R    +     +  L + +  DG++         ++TGR S      
Sbjct: 554 APLHPIIEKIMHYR-ELGKLQSTYVEGLQKVVKDDGKIHTRYTQ-TLTQTGRLSSVNPNL 611

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIE 385
           QN+P                                 +R    A   G  L   D + IE
Sbjct: 612 QNIPIRLEEGRR-------------------------IRKAFTASEPGWVLYAVDYSQIE 646

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A M+ ++  + AF   ED++ +T A  F V+  +VT   R   K +          
Sbjct: 647 LRIMAHMSQDEKMMAAFLHDEDIHTSTAANVFKVSAEEVTSLMRRQAKAVNF-------- 698

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++    +                                        + 
Sbjct: 699 ------GIIYGISDYGLSQ------------------------------NLGITRKEAQT 722

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++   V    +   +   +                          +  +     
Sbjct: 723 FIDTYFEQFPGVKTFMDAAIERARE--------------------------HGFVETMLK 756

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------K 619
           R     D+ +             R            +Q  + DI+ + M++        K
Sbjct: 757 RRRNIPDIHSRNF---NLRGFAERTAINTP------IQGTAADIIKKAMIDVDHALNASK 807

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               ++L VHDE++ E P  +      L    M    +    +PL+A+G     +
Sbjct: 808 LQSKLLLQVHDELIFEGPTEEMEALEKLVTEAMEQTVT--LDVPLRADGAVGTTW 860


>gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH]
 gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH]
          Length = 872

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/700 (15%), Positives = 204/700 (29%), Gaps = 177/700 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV 56
             +  D ET S             E+  ++ F+F ++ +        H        +P+ 
Sbjct: 320 KIVAFDTETDSL------------ENPNIVGFSFAYEKNKAYYVPINHFYLGVTDQIPEK 367

Query: 57  -----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109
                +++ L   D  ++ HN  F+  +LK    L+IP      T++LA       P  L
Sbjct: 368 TALKAIQKIL---DKKVIGHNLKFDFKMLKKY-GLEIPT-PHADTMILAWILDPDSPVGL 422

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            +V +              L  +  K +                 +   +Y   D  ++ 
Sbjct: 423 DSVAKRY------------LDHQNIKFKEVIGKRKN---FSEVDIQEAAKYAAEDALISL 467

Query: 170 EIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           ++++ L+              E     L   I  +G  +D+     L      +   L Q
Sbjct: 468 KLYEILKEKLWEEVKWDIENIEMPFINLLIDIESQGIKLDIEYMQKLQTETTEKLENLTQ 527

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           E+         + +  ++L   LF    L ++  T+   +T ++VL+S K   P   ++ 
Sbjct: 528 EIYRYAGS-EFNIKSTKQLAHILFEVLKLPVKRKTKTGYSTDEKVLTSLKGTHPIIEKLL 586

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSRSH 336
             R +  +     +  L E    D   +    FL   + TGR S      QN+P  +   
Sbjct: 587 EYR-KLDKLLSTYIIPLQEYAKKDPNHKIYTNFLQTGTATGRLSSKNPNLQNIPTSTD-- 643

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   +A +  + V  D + IE R+LA  + ++
Sbjct: 644 -------------------------INIRDAFVAEK--EFVSLDYSQIELRLLAHFSKDE 676

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF   +D+++ T  + F        K+ R + K +                    G
Sbjct: 677 HLINAFLEDKDIHLETAVKIFG---ENRAKEYRPVAKSINF--------------GLIYG 719

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +                                 + +          +   + +      
Sbjct: 720 MGP------------------------------KKLSETINVSTKEAKEFIEKYFASFPT 749

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V      L     +  E G      KRR                                
Sbjct: 750 VKTF---LENTKIEAREKGYVETLLKRRRFFDF--------------------------- 779

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--GYDIVLTVHDEIVC 634
                           +  +    I Q  + DI+ + M+   +      ++L +HDE++ 
Sbjct: 780 ------AAANARTLANFEREAVNTIFQGSAADIIKKAMIEIKQRFPKAKMLLQIHDELIF 833

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E        A     +M +       +PLK      KR+ 
Sbjct: 834 EI--DSRDEAYEYKKIMQNVFK--LEVPLKVGISFGKRWG 869


>gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
 gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03]
          Length = 875

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 98/661 (14%), Positives = 205/661 (31%), Gaps = 127/661 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F   +D     +         P+ L   LE+       H++      +K  
Sbjct: 327 YLKD-ELLKFGL-YDGEQYVVIPFDKVNEYPE-LVAWLEDETTQKWVHDAKKTYIAMKR- 382

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
            ++ I  +    T++ +        ++ V   +    Q   +  + ++ + KG++     
Sbjct: 383 SDIAIE-NVVFDTMLASYIIDPSRTIEDVHSVMTHFDQTFVQ--DDVSVYGKGKSFHIPE 439

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
           D     H  +        +  +    E  ++   LS  E  L  +   +   G   D+  
Sbjct: 440 DGVLDKHIASILDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDIDT 499

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
              +  ++  E  +L +++         +    ++L   LF +  L +   T+   +T  
Sbjct: 500 LKEMETVIQTELDQLIEQIHEQAG-EKFNINSPKQLGVILFEKLELPVIKKTKTGYSTAV 558

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL   +   P    +   R   S+     +  L + +  DGR+        A +TGR S
Sbjct: 559 DVLEKLQNAHPIIDNILTYR-TLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLA-QTGRLS 616

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379
                 QN+P       +                         +R    ++ E   ++ A
Sbjct: 617 SVDPNLQNIPIRLEEGRK-------------------------IRKAFKSTHEDYVILAA 651

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA + G+    +AF   ED++ TT  + FNVA  +VT   R   K +   +
Sbjct: 652 DYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAKAVNFGI 711

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y            +  L +         +     +   +++   + ++  +    +   
Sbjct: 712 VYGIS-----DYGLSQSLGITRKEAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETL- 765

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                                                    ++RR +P +  +       
Sbjct: 766 ----------------------------------------LKRRRYIPDITSRNFNLRGF 785

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                            R+ +N+                   +Q  + DI+   M+   +
Sbjct: 786 ---------------AERTAMNSP------------------IQGSAADIIKLAMVQFHR 812

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKR 672
                     ++L VHDE++ E P  +       +  +M         +PL  E    K 
Sbjct: 813 EVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ--LDVPLSVESDYGKT 870

Query: 673 Y 673
           +
Sbjct: 871 W 871


>gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271]
 gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271]
          Length = 891

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 94/660 (14%), Positives = 185/660 (28%), Gaps = 127/660 (19%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L +  +     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGAMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG         
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLEKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +     
Sbjct: 669 YSQIELRVLAHIANDKGLVDAFQRDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNF--- 725

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G++    +                                     
Sbjct: 726 -----------GIVYGISDYGLSQ------------------------------NLGITR 744

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
            A     + + +    V E  +++    +   + G      K                  
Sbjct: 745 KAAAEFIEKYLESFPGVQEYMDDI---VKDAKQKGYVATLLK------------------ 783

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----N 616
                R     ++ +             R            +Q  + DI+ + M+     
Sbjct: 784 -----RRRYIPEITSRNF---NLRSFAERTAMNTP------IQGTAADIIKKAMIIMADR 829

Query: 617 ATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 830 LEEEGLQARLLLQVHDELIFEAPQEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue]
          Length = 878

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/675 (13%), Positives = 174/675 (25%), Gaps = 157/675 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 330 HDAPIVGIALV--NEHGRFFLRAEMALADPQFVAWLADETKKK----SMFDAKRASVALK 383

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++        L+ A           V         KM++ + +             
Sbjct: 384 WKGIELRGVA-FDLLLAAYLLNPAQDAGDVAAV-----AKMKQYEAVRPDEAVYGKGA-- 435

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-------------EQELWYLD 189
             R+ P+                     I+    P   +             EQ L  + 
Sbjct: 436 -KRSLPDEPTLAEHLVRKAA-------AIWALERPFLDELRSNEQDELLIKLEQPLATIL 487

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  VD      +   +  +   ++Q +  L      +    ++L   LF +  L
Sbjct: 488 AEMEFTGVKVDTKRLEQMGSELAEQLGAIEQRIYELAGQ-EFNINSPKQLGIILFEKLQL 546

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL            + + R    +     +  L++ ++ D     
Sbjct: 547 PVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVHHDTGKVH 605

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T+     ++TGR S      QN+P       +                         +R 
Sbjct: 606 TMFNQALTQTGRLSSAEPNLQNIPIRLEEGRK-------------------------IRQ 640

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             +    G  +  AD + IE RVLA +A +   ++AF    D++  T    F+V+  +VT
Sbjct: 641 AFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHAKTAMDIFHVSEEEVT 700

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R   K +                    G++    A                      
Sbjct: 701 ATMRRQAKAVNF--------------GIVYGISDYGLAQ--------------------- 725

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                 + +      V      + Q  +Q    G          
Sbjct: 726 ---------NLNITRKEAAEFIERYFASFPGVKRYMETIVQEAKQ---KGYVTTLLH--- 770

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                               R     D+ +             R            +Q  
Sbjct: 771 --------------------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGS 801

Query: 606 SRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+ + M++        +    ++L VHDE++ E P  +      L   +M       
Sbjct: 802 AADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE-- 859

Query: 659 KGLPLKAEGYESKRY 673
             +PLK + +    +
Sbjct: 860 LRVPLKVDYHYGPTW 874


>gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1]
 gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1]
          Length = 504

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 83/621 (13%), Positives = 174/621 (28%), Gaps = 145/621 (23%)

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFC 134
             VL+    +         T++            +  + E       +     ELI    
Sbjct: 1   MIVLQNYGAVV--KGPLFDTMIAHYVLQPELRHGMDYLAEIYLH--YQTIHIDELIG--- 53

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQE 184
                       K       +    Y   D  +T ++   LE               E  
Sbjct: 54  ------PKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMP 107

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  +   I   G  +D       +     +  ++++E+  L      +    +++   LF
Sbjct: 108 LVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELAG-ETFNIASPKQVGEVLF 166

Query: 245 LETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
            +  +      T+T    T + VL S +   P   ++  +R    +     ++ L   +N
Sbjct: 167 DKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR-GLKKLLGTYIDALPLLIN 225

Query: 300 SD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
              GR+  +      + TGR S      QN+P    + +E                    
Sbjct: 226 PRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE-------------------- 264

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                +R   I  EG     AD + IE R++A ++ ++  + AF +  D++  T A+ + 
Sbjct: 265 -----IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYK 319

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           +    V  D R   K                      G+++   A  +  +         
Sbjct: 320 IDLKDVDSDMRRKAKTANF--------------GIIYGISVFGLAERMNVD--------- 356

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                                    + +   + + +  V    ++  Q  ++        
Sbjct: 357 ---------------------RKEAKELIDGYFETYPGVKAYMDKSIQVAQE-------- 387

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                +     R     D+ +  + +        R         
Sbjct: 388 ------------------KGYVETIFHRKRFLPDINSRNAVVRGY---AERNAINAP--- 423

Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHLMT 652
              +Q  + DI+   M    +          ++L VHDE+    P  ++     +     
Sbjct: 424 ---IQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIE-E 479

Query: 653 SNPSWAKGLPLKAEGYESKRY 673
              ++   +PLKA+    K +
Sbjct: 480 MEKAYRMHVPLKADCGWGKNW 500


>gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii]
          Length = 876

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 87/659 (13%), Positives = 186/659 (28%), Gaps = 131/659 (19%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            ++  A   +   +           P V K+  E+        ++      L+    +++
Sbjct: 331 DIVGMAVQNEKG-IFYLPTESTLKSP-VFKKWAEDETKKKTVFDAKRTVIALRRH-GIEL 387

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                   L+ +       +             K+    E+ +          L   ++ 
Sbjct: 388 KGIE-FDLLLASYLINPSESPSDFA-----DVAKLHGFNEVQSDEAVYGKGAKLKLPDRE 441

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP---LSSKEQELWYLDQTINDRGYCVDVALAH 205
            + E                R++ K  +        E  L  +   +   G  VDV    
Sbjct: 442 IYEEHIARKAVGLTKLAETCRDVLKENDQLSLFYDLEMPLALILADMEWTGVKVDVDRLT 501

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
            +   +     ++++E+  L      +    ++L   LF + GL +   T+   +T   V
Sbjct: 502 EMGDELHNRLQEIEKEIYELAGQ-EFNINSPKQLGHILFEKMGLPVIKKTKTGYSTSADV 560

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L   +        +   R    +     ++ L++ ++ +     T      ++TGR S  
Sbjct: 561 LEKLESSHEIVRYILEYRQ-LGKLQSTYIDGLLKVVHQNTHKVHTRFNQALTQTGRLSSA 619

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADL 381
               QN+P       +                         +R   + SE    +  AD 
Sbjct: 620 DPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKDWVIFSADY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA ++G+Q  ++AF    D++  T    F+V   +VT + R   K +   + Y
Sbjct: 655 SQIELRVLAHISGDQKLIEAFREDMDIHTKTAMDVFHVQKEEVTSNMRRQAKAVNFGIVY 714

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                       +  L +               + D + +   +                
Sbjct: 715 GIS-----DYGLSQNLGITRKEAGQFIERYFASYPDVKEYMDEIVREAKRKGYVTTL--- 766

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                                                   +RR +P +  +         
Sbjct: 767 --------------------------------------LHRRRYLPEITSRNFNVRSF-- 786

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620
                          R+ +NT                   +Q  + DI+ + M++  +  
Sbjct: 787 -------------AERTAMNTP------------------IQGSAADIIKKAMIDMAERL 815

Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                   ++L VHDE++ E P  +      +   +M         +PLK +      +
Sbjct: 816 KKEQLKSRMLLQVHDELIFEVPPDEIETMKKIVPDVMEHAVE--LKVPLKVDYAYGPTW 872


>gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1]
 gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1]
          Length = 910

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 102/709 (14%), Positives = 187/709 (26%), Gaps = 174/709 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFG--------------FDDHPVELWDCVH 49
           L ID ET S   L             ++  +                            H
Sbjct: 316 LVIDTETTSLNALR----------AELVGISLCPLPAAATAADNSQPTPPPTAWYLPIGH 365

Query: 50  D-------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                           + Q L   L +  +  + HN  ++  VLK+   L++       +
Sbjct: 366 RLADGSPAPGQLPLAAVQQQLAPLLGDPQLLKLGHNLKYDLQVLKSH-GLELA-APLADS 423

Query: 97  LVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           ++ +           L  +   L            L  +            R +      
Sbjct: 424 MIASYLIDPGRRSHKLDDLSSEL------------LERQLTSFAEVSAGDRRPEAFAYVE 471

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVAL 203
                 Y   DV  +R +++   P   +          E  L  +   +   G  VD A+
Sbjct: 472 PAAACRYSCQDVVASRLLWELFAPQLQQLGLDSLLHEVEMALLPILARMERLGILVDPAV 531

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TT 258
              L +    E  +L+ ++  L      +     +L   L+    L     T+     +T
Sbjct: 532 LDELEREFGRELARLESKIAELAG-ESFNINSPRQLGEVLYERLKLPHGRKTKGKTGYST 590

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTG 317
             R L            V ++R   S+     ++ L   ++  DGR+  T      + TG
Sbjct: 591 DYRELERLAAYHDLPAAVISHRN-LSKLKSTYVDKLATLIDPADGRVHTTFNQ-TVTATG 648

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P  +     L                         R+  +A+ G   +
Sbjct: 649 RLSSSNPNLQNIPIRTPEGRRL-------------------------RAAFVAAAGHLFL 683

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + I+ RVLA  +G+    +AF   +D++  T A  F V    V+ D R + K +  
Sbjct: 684 AADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINF 743

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y   A           L  +        +   E ++    F + + E          
Sbjct: 744 GIVYGMSA-----FGLAEQLRCSRKEAQTFIDRYFELYQGVLRFMQEIVEQARRDGWVGT 798

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
            +            + +S          +    T   G A    K   +           
Sbjct: 799 LLNRRRPLP-----EINSGNKMRREFAERTAINTPIQGTAADIIKLAAIACD-------- 845

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   R+L      +                                      ++  
Sbjct: 846 --------RALREAGCRSE------------------------------------ALLQI 861

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA 665
                       DE++ E P  +      ++   M      A  +PL  
Sbjct: 862 H-----------DELIFEVPQDELAQVGPLIRQAMEEVMELA--VPLTV 897


>gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2]
 gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2]
          Length = 881

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 95/678 (14%), Positives = 195/678 (28%), Gaps = 144/678 (21%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAH 71
           +   G   + ED  ++     + +          D   +      LK A   +    V  
Sbjct: 324 IEMLGDNYHLED--IVGV--AWGNQQKIYVTNQDDLFENEYFIAWLKNA---SSQKKV-- 374

Query: 72  NSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
              ++       L        P      TL+ A       +   +    K       +  
Sbjct: 375 ---YDAKRTYVALNRYA--AAPQGIVFDTLLAAYLLDTNDSNNDIAGVAKHYGFYAIQSD 429

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           E I      +      +     H         Y    +        +    +  E  L  
Sbjct: 430 EAI-YGKGVKRGLPADEEVFFAHLARKVAAINYLSVRLAKELAEKNQTALFTDMELPLSK 488

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  VD +  H +         +++Q++         +    ++L   LF + 
Sbjct: 489 ILAEMEITGIRVDASRLHQMKGEFAERLHEIEQKIYQEAG-EEFNLNSPKQLGVILFEKM 547

Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
           GL +   T+   +T   VL   K+  P    +   R   ++     +  L++ +  DG++
Sbjct: 548 GLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILIYRQ-IAKIQSTYVEGLLKVIQGDGKV 606

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
                    ++TGR S      QN+P       +                         +
Sbjct: 607 HTRYVQ-TLTQTGRLSSVDPNLQNIPIRLEEGRK-------------------------I 640

Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422
           R   +   +   +  +D + IE RVLA ++ ++    AF  G+D++ +T  R F ++ P 
Sbjct: 641 REAFVPRAKDWVIYSSDYSQIELRVLAHISNDEHLKAAFVEGQDIHSSTAMRVFGISTPE 700

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT + R   K +                    G++    +                   
Sbjct: 701 EVTPNMRRQAKAVNF--------------GIVYGISDYGLSQ------------------ 728

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                              A ++    + +K+  V     E+ +  +             
Sbjct: 729 ------------NLGITRKAAQQYIDTYFEKYPGVKTYMEEVVREAKD------------ 764

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +     R     D+ +    L T      R            +
Sbjct: 765 --------------KGYVETLYHRRRYLPDINSRNFNLRTF---AERTAINTP------I 801

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655
           Q  + DIL   M++  +          ++L VHDE+V E P+ +     +++  +M +  
Sbjct: 802 QGSAADILKIAMIDLDRRLKEEKLQATMLLQVHDELVFEVPEDELERLDALVKEVMENAV 861

Query: 656 SWAKGLPLKAEGYESKRY 673
           S    +PL  +    K +
Sbjct: 862 S--LHVPLLTDSNWGKTW 877


>gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208]
          Length = 531

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 80/640 (12%), Positives = 179/640 (27%), Gaps = 144/640 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKA-- 111
           +  +E +E+   T V +++      +     + + I       ++ +       ++    
Sbjct: 11  EAFREWVESEQ-TKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFT 66

Query: 112 -VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            V      +  + +E             +     R+ P                  + + 
Sbjct: 67  SVAVRHDYTEVETDE-----------AVYGKGAKRSTPEESIVASHLARKAVAIADLEKR 115

Query: 171 IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +   LE       +   E  L ++   +  +G  VD      +   +      L++ + S
Sbjct: 116 LVADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHS 175

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
           L      +    ++L   LF + GL     T+   +T   VL S         ++   R 
Sbjct: 176 LAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQ 234

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++  + +     T      ++TGR S      QN+P       +   
Sbjct: 235 -LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRK--- 290

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +R   +    G K+  AD + +E RVLA ++ ++  + 
Sbjct: 291 ----------------------IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIY 328

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+   D++  T    F+V   +V    R   K +                    G++  
Sbjct: 329 AFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN--------------FGIVYGISDY 374

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +                                        +     +   +  V E 
Sbjct: 375 GLSQ------------------------------NLGITRKEAKDFIDRYFVSYPAVKEY 404

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             ++ +  ++  +     I                          R     ++ +     
Sbjct: 405 MQDIVRFAKE--KGYVETILH------------------------RRRYIPEIVSRNF-- 436

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
                   R            +Q  + DI+ + M+         K    ++L VHDE++ 
Sbjct: 437 -NVRGFAERTAMNTP------IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIF 489

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           E P+ +      +   +M +       +PLK +      +
Sbjct: 490 EAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 527


>gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1]
 gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1]
          Length = 923

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 96/700 (13%), Positives = 186/700 (26%), Gaps = 157/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL------ 57
            +D ET S   +             +I  +F  +          HD    P  L      
Sbjct: 346 ALDTETDSLDPM----------QAVLIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQAL 395

Query: 58  ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
              +  LE+  V  V  +  ++  VL+    + +  +    TL+ +       A   +  
Sbjct: 396 ALLQPLLEDPAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDMDT 453

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G E +              +  P      +   +Y   D  +T  +
Sbjct: 454 LARRH--------LGYETMKYV----DLVGKGAKQIPFSHVGVQEATQYAAEDADITLRL 501

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  + + I   G  +D    +  +  +        Q
Sbjct: 502 HCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQ 561

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 562 KAMDLAGRH-FNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVI 620

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++        L E ++   GR+       GA+ TGR S      QN+P  +  
Sbjct: 621 LEYR-SLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD 678

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 679 GRR-------------------------IRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++    A  F     +VT ++R   K +   L Y   A          
Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSA-----FGLAR 768

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L ++            + +    +F    ++   +    +   G       + +    +
Sbjct: 769 QLGISRGEAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGR------RLYLNSIA 822

Query: 516 RVSELWN-ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             ++       +A       G A    KR  V +                          
Sbjct: 823 SGNQTQRAGAERAAINAPMQGTAADIIKRAMVAVDGWLGVGG------------------ 864

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                         R                        ++               E+V 
Sbjct: 865 -----------HRERA---------------------LMILQVHD-----------ELVF 881

Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E  +         +   M +       +PL  +      +
Sbjct: 882 EADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919


>gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47096730|ref|ZP_00234315.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|224499777|ref|ZP_03668126.1| DNA polymerase I [Listeria monocytogenes Finland 1988]
 gi|224501495|ref|ZP_03669802.1| DNA polymerase I [Listeria monocytogenes FSL R2-561]
 gi|254828200|ref|ZP_05232887.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|254898268|ref|ZP_05258192.1| DNA polymerase I [Listeria monocytogenes J0161]
 gi|254912239|ref|ZP_05262251.1| DNA polymerase I [Listeria monocytogenes J2818]
 gi|254936566|ref|ZP_05268263.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284801956|ref|YP_003413821.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284995098|ref|YP_003416866.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria monocytogenes EGD-e]
 gi|47014914|gb|EAL05862.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854]
 gi|258600588|gb|EEW13913.1| DNA polymerase I [Listeria monocytogenes FSL N3-165]
 gi|258609161|gb|EEW21769.1| DNA polymerase I [Listeria monocytogenes F6900]
 gi|284057518|gb|ADB68459.1| DNA polymerase I [Listeria monocytogenes 08-5578]
 gi|284060565|gb|ADB71504.1| DNA polymerase I [Listeria monocytogenes 08-5923]
 gi|293590215|gb|EFF98549.1| DNA polymerase I [Listeria monocytogenes J2818]
          Length = 875

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 78/662 (11%), Positives = 178/662 (26%), Gaps = 144/662 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
                       +         +  ++ +E+   T V +++      +     + + I  
Sbjct: 333 IGLTVHSSQGTYFFTKETAESSEAFRKWVESDQ-TKVVYDAKKTIVAMNR---IGLAISG 388

Query: 93  W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                ++ +       ++     V      +  + +E             +     R+ P
Sbjct: 389 ITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AVYGKGAKRSTP 437

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
                             + + +   LE       +   E  L ++   +  +G  VD  
Sbjct: 438 EESIVAAHLARKAVAIADLEKRLVDDLEKNEQLALMEDLELPLTFVLAEMEMQGVSVDTD 497

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +      L+  + SL      +    ++L   LF +  L     T+   +T 
Sbjct: 498 RLEDMKVELGGRLKTLEASIHSLAG-EEFNINSPKQLGVILFEKLELPPVKKTKTGYSTA 556

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL S         ++   R    +     +  L++  + +     T      ++TGR 
Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +    G K+  
Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 650

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +   
Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN-- 708

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    +                                   
Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +     +   +  V E   ++ +  ++  +     I                   
Sbjct: 727 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617
                  R     ++ +             R            +Q  + DI+ + M+   
Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
                 K    ++L VHDE++ E P+ +      +   +M +       +PLK +     
Sbjct: 812 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869

Query: 672 RY 673
            +
Sbjct: 870 TW 871


>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 877

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 82/664 (12%), Positives = 173/664 (26%), Gaps = 136/664 (20%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 330 HDAPIVGIALV--NEHGRFFMRPETALADSQFLAWLADETKKK----SMFDAKRAVVALK 383

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +D+        L+ A           +    K+   +     E +  + KG      
Sbjct: 384 WKGIDVRGVA-FDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAV--YGKGVKRSLP 440

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            ++    H           +       ++    +     + E     +   +   G  VD
Sbjct: 441 DEQTLAEHLVRKAAAIWALEQ--PFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +   +  +   ++Q +         +    ++L   LF +  L +   T+   +
Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYEHAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYS 557

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL            + + R    +     +  L++ +  D     T+     ++TG
Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTGKVHTMFNQTLTQTG 616

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376
           R S      QN+P       +                         +R   +       +
Sbjct: 617 RLSSAEPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPDWLI 651

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             AD + IE RVLA +A +   ++AF+   D++  T    F+V+  +VT + R   K + 
Sbjct: 652 FAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVN 711

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    A                                 
Sbjct: 712 F--------------GIVYGISDYGLAQ------------------------------NL 727

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                      + +      V           ++  + G                     
Sbjct: 728 NITRKEAAEFIERYFASFPGVRRYM---ENIVQEAKQKGYVTTLLH-------------- 770

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    R     D+ +             R            +Q  + DI+ + M++
Sbjct: 771 ---------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGSAADIIKKAMID 812

Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                   +    ++L VHDE++ E P  +      L   +M    S    +PLK + + 
Sbjct: 813 LAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVS---SVPLKVDYHY 869

Query: 670 SKRY 673
              +
Sbjct: 870 GPTW 873


>gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259]
 gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259]
          Length = 907

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 107/698 (15%), Positives = 188/698 (26%), Gaps = 156/698 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH----------DPVMP 54
            +D E  S   L             +I  AF   +         H               
Sbjct: 333 ALDVEASSASPLQC----------ELIGLAFAVCEGEAAYLPLGHHYAGAPAQLSRAAAF 382

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
             +K  LE     IV  N  + R VL  C  + +       TL+ +       P  L ++
Sbjct: 383 ARIKPLLEERAAKIVGQNLKYARHVLANC-GIAL-GGAADDTLLQSYVLEAHQPHELASL 440

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                           L       +             + A    GEY      VT  + 
Sbjct: 441 ANRH------------LGLATLACDELTGKGAARIGFDQVAVERAGEYAAEQADVTLRVR 488

Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            +L                 E  +  +   +   G  +D AL    +  +  +  +L+Q 
Sbjct: 489 GQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGRKMLELEQR 548

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVF 277
                     +    +++   LF + GL +   T     +T +  L       P A  + 
Sbjct: 549 AFQEAGQP-FNLGSPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLALDHPIARAIL 607

Query: 278 NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
           + R   ++      + L + ++   GRL  +     A  TGR +      QN+P  +   
Sbjct: 608 DYR-GLAKLKSTYTDKLPQMVHPLTGRLHTSYSQATA-VTGRLASVEPNLQNIPARTAEG 665

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      +R   IA  G  LV AD + IE R++A ++ + 
Sbjct: 666 RR-------------------------IREAFIAPPGHLLVSADYSQIELRIMAHLSDDA 700

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             L AF    D++  T A  F V    V+ +QR I KV+   L Y   A         + 
Sbjct: 701 GLLHAFANDLDIHTATAAEVFGVPLDAVSAEQRRIAKVINFGLIYGMSA-----FGLASQ 755

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           LNL   A     +     +    N+    +E+       +   G            ++  
Sbjct: 756 LNLERSAAQAWIDRYFTRYPGVANYMLRTRESARAQGYVETVFGR--RLYLPEINARNP- 812

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
             +      +A       G A    K   + +                        + + 
Sbjct: 813 --QRRQGAERAAINAPMQGTAADLIKLAMIAVQRW---------------------IDSE 849

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
           R                                    ++        ++L        E 
Sbjct: 850 RLGTRL-------------------------------LLQVHDE---LIL--------EV 867

Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           P+ +     + L   M      A  +PL+        +
Sbjct: 868 PEHELERVRAELPSHMCDVA--ALKVPLRVGVGVGGNW 903


>gi|254831966|ref|ZP_05236621.1| DNA polymerase I [Listeria monocytogenes 10403S]
          Length = 875

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 78/662 (11%), Positives = 178/662 (26%), Gaps = 144/662 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
                       +         +  ++ +E+   T V +++      +     + + I  
Sbjct: 333 IGLTVHSSQGTYFFTKETAESSEAFRKWVESDQ-TKVVYDAKKTIVAMNR---IGLAISG 388

Query: 93  W-ICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                ++ +       ++     V      +  + +E             +     R+ P
Sbjct: 389 ITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AVYGKGAKRSTP 437

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
                             + + +   LE       +   E  L ++   +  +G  VD  
Sbjct: 438 EESIVAAHLARKAVAIADLEKRLVDDLEKNEQLALMEDLELPLTFVLAEMEMQGVSVDTD 497

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +      L+  + SL      +    ++L   LF +  L     T+   +T 
Sbjct: 498 RLEDMKVELGGRLKTLEASIHSLAG-EEFNINSPKQLGVILFEKLELPPVKKTKTGYSTA 556

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL S         ++   R    +     +  L++  + +     T      ++TGR 
Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +    G K+  
Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFS 650

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +   
Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN-- 708

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    +                                   
Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +     +   +  V E   ++ +  ++  +     I                   
Sbjct: 727 TRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617
                  R     ++ +             R            +Q  + DI+ + M+   
Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
                 K    ++L VHDE++ E P+ +      +   +M +       +PLK +     
Sbjct: 812 ERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869

Query: 672 RY 673
            +
Sbjct: 870 TW 871


>gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99]
          Length = 875

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 98/661 (14%), Positives = 205/661 (31%), Gaps = 127/661 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           Y +D  ++ F   +D     +         P+ L   LE+       H++      +K  
Sbjct: 327 YLKD-ELLKFGL-YDGEQYVVIPFDKVNEYPE-LVAWLEDETTQKWVHDAKKTYIAMKR- 382

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
            ++ I  +    T++ +        ++ V   +    Q   +  + ++ + KG++     
Sbjct: 383 SDIAIE-NVVFDTMLASYIIDPSRTIEDVQSVMTHFDQTFVQ--DDVSVYGKGKSFHIPE 439

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
           D     H  +        +  +    E  ++   LS  E  L  +   +   G   D+  
Sbjct: 440 DDILDKHIASILDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDIDT 499

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
              +  ++  E  +L +++         +    ++L   LF +  L +   T+   +T  
Sbjct: 500 LKEMETVIQTELDQLIEQIHEQAG-EKFNINSPKQLGVILFEKLELPVIKKTKTGYSTAV 558

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL   +   P    +   R   S+     +  L + +  DGR+        A +TGR S
Sbjct: 559 DVLEKLQNAHPIIDNILTYR-TLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLA-QTGRLS 616

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379
                 QN+P       +                         +R    ++ E   ++ A
Sbjct: 617 SVDPNLQNIPIRLEEGRK-------------------------IRKAFKSTHEDYVILAA 651

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA + G+    +AF   ED++ TT  + FNVA  +VT   R   K +   +
Sbjct: 652 DYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAKAVNFGI 711

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y            +  L +         +     +   +++   + ++  +    +   
Sbjct: 712 VYGIS-----DYGLSQSLGITRKEAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETL- 765

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                                                    ++RR +P +  +       
Sbjct: 766 ----------------------------------------LKRRRYIPDITSRNFNLRGF 785

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                            R+ +N+                   +Q  + DI+   M+   +
Sbjct: 786 ---------------AERTAMNSP------------------IQGSAADIIKLAMVQFHR 812

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKR 672
                     ++L VHDE++ E P  +       +  +M         +PL  E    K 
Sbjct: 813 EVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ--LDVPLSVESDYGKT 870

Query: 673 Y 673
           +
Sbjct: 871 W 871


>gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942]
 gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942]
          Length = 880

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 86/662 (12%), Positives = 184/662 (27%), Gaps = 131/662 (19%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERTVLK-A 82
            +  ++ F+   +             +    ++ K+  E+        +S   R+V+   
Sbjct: 332 HEAPILGFSLVNETGH-YYIP---KEIAVQSEIFKKWAEDESQKKWVFDSK--RSVVALR 385

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++        L+ A      +    V    K     +       A + KG      
Sbjct: 386 WQGIELKGAE-FDALLAAYIINPANTYDDVASVAK--DYGLHIVSSDEAVYGKGAKRAVP 442

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            +     H        +  +  +    E   +LE     E  L  +   +   G  VDV 
Sbjct: 443 GENELAMHLVRKAAAVDSLREKLLQELENNDQLELYEELELPLALILGEMESIGVKVDVG 502

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     + ++++  +      +    ++L   LF + GL +   T+   +T 
Sbjct: 503 RLERMGEELGARLKEYEEKIHEIAG-EPFNINSPKQLGVILFEKLGLPVVKKTKTGYSTS 561

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            +   R    +     +  L++ +  D     T      ++TGR 
Sbjct: 562 ADVLEKLADQHDIVSYILQYRQ-IGKLQSTYIEGLLKVIRKDSHKVHTRFNQALTQTGRL 620

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVV 378
           S      QN+P       +                         +R   + SE    +  
Sbjct: 621 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEKDWLIFA 655

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA ++ ++  ++AF    D++  T    F+VA  +VT   R   K +   
Sbjct: 656 ADYSQIELRVLAHISKDENLIEAFTNDMDVHTKTAMDVFHVAQDEVTPAMRRQAKAVN-- 713

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    +                                   
Sbjct: 714 ------------FGIVYGISDYGLSQ------------------------------NLGI 731

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                    + + +    V        ++ ++  + G      +                
Sbjct: 732 TRKEAAAFIERYLESFKGVKVYM---EESVQEAKQKGYVTTLMQ---------------- 772

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R     ++ +             R            +Q  + DI+ + M++  
Sbjct: 773 -------RRRYIPELTSRNF---NLRSFAERTAMNTP------IQGSAADIIKKAMIDMA 816

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
                      ++L VHDE++ E P  +      L   +M         +PLK +     
Sbjct: 817 AKLKEKQLKAKLLLQVHDELIFEAPKEEIKLLEKLVPEVMEHA--LNLDVPLKVDFASGP 874

Query: 672 RY 673
            +
Sbjct: 875 SW 876


>gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
 gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680]
          Length = 871

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 97/653 (14%), Positives = 185/653 (28%), Gaps = 147/653 (22%)

Query: 38  DDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-C 95
           +   V +++   DP    + L+  LEN ++  + HN  F   VLK      +        
Sbjct: 344 NGEDVYVFEMEQDPRAALEKLRAFLENEEIGKLVHNGKFIEVVLKRY---GLKFDGVRGD 400

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           TL+L+       + + + E L            L     +           K  H+    
Sbjct: 401 TLLLSYVLDPGFSGETLSEHL---------FHYLGEVVDEKMDPGLAVRGLKKLHQVLEE 451

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
             G     D+    ++          E  L  +   +   G  VD  +   ++Q + +  
Sbjct: 452 KLGS---QDLVNLYKV---------VELPLSPVLADMEFTGIKVDPRILAEISQELALRI 499

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
            +    +  +      +     +L   LF + GL     T+   +T   VL         
Sbjct: 500 AEDQARIYQVAGQ-EFNINSTRQLGKVLFEDLGLPPVKKTKTGYSTSAEVLEELYGSHEI 558

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +   R   ++     ++T    ++ +     T+     + TGR S      QN+P  
Sbjct: 559 IEHIVEYR-TLAKLKSTYVDTFPGYIHPETGRVHTVFKQAVTATGRLSSVEPNLQNIPIR 617

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391
                                          +R   +   E   L+  D + I+ R LA 
Sbjct: 618 MEEGRR-------------------------IRKAFVPGDENHILLSCDYSQIDLRSLAH 652

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           M+G++  ++ F  G D++  T +  F V   QVT D R   K +                
Sbjct: 653 MSGDENLIETFRQGIDIHHRTASEIFKVPLDQVTPDLRRKAKAVNF-------------- 698

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++                                  A          +   + + 
Sbjct: 699 GIVYGISDFGL------------------------------ARGTGVTREEAKAYIERYL 728

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +  V     E+     +                             +    GR     
Sbjct: 729 DSYPGVRRYMQEVVAMGRE--------------------------KGYVSTVLGRRRYLP 762

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
           D+ ++     T      R            +Q  S DI+   M++  +          ++
Sbjct: 763 DLLSSN---RTVRSMAERMALNAP------IQGTSADIIKLAMLSVYRELKRRNLRSRML 813

Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY--RK 675
           L VHD++V E P  +    ++L    M +       +PL+ E      +   K
Sbjct: 814 LQVHDDLVFEVPLEELEEVALLVRDCMENAFE--LKVPLEVEVKVGANWYDMK 864


>gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
 gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491]
 gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491]
          Length = 896

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 94/700 (13%), Positives = 202/700 (28%), Gaps = 166/700 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PV 52
               D ET S                 ++ F+F  +          H+            
Sbjct: 332 IFSFDTETTSLD----------VRKAKIVGFSFSVNGVDCYYIPIAHNYLGVESQVSLEC 381

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKA 111
             + +++  +     ++ HN  ++  +LK  F+  +    +   +++LA           
Sbjct: 382 ARECIEQIFQ--SQYVIGHNLKYDLEILKTNFDFVLEDFSKVRDSMLLAWLLQS----DT 435

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +   L    +K     E+I           +  +N+       +   EY   D     ++
Sbjct: 436 LCN-LDFLMKKY-FNHEMIHYKD-------IVGKNENFSNILIQHACEYASEDAAACYQL 486

Query: 172 FKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           + +L  L  +                   +   G  +D+     LN     +  ++ +E+
Sbjct: 487 YFKLRGLMDESLLEIAQKVEFPFIQSLMNMELSGIKIDLEYFLGLNAETREKLHQISEEI 546

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNN 279
             L      +    ++L + LF +  L     T++   T + VL+S     P   ++   
Sbjct: 547 FVL-ANKRFNLNSPQQLASILFDDLKLEASKKTKSGYSTSELVLNSLYDSHPIIPKILEY 605

Query: 280 RMRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
           R  + +     +  L+E   SD   R+  +    G + TGR S      QN+P  +    
Sbjct: 606 R-ESFKLYSTYIEPLIEHAKSDLEHRIYTSFMQTG-TSTGRLSSKNPNLQNIPVKTLEGR 663

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA E   L+  D + IE R+LA  + ++ 
Sbjct: 664 R-------------------------IRKGFIAKENCLLISLDYSQIELRLLAHFSQDKA 698

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF    D+++ T  + F     ++ +++RA+ K +   L                  
Sbjct: 699 MIDAFLQDADIHLETAKKIFG---EEMAQEKRAVAKSINFGLI----------------- 738

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                            + +          +   + +      +
Sbjct: 739 ---------------------------YGMGPKKLSETLKINFQEAKTYIQNYFTSFPMI 771

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                E  +   +        +  + R      +++ +    L                 
Sbjct: 772 KNFLKEQEEFILE--NGYSKTLLGRMRKFDFEGVQEYQKAAFLR---------------- 813

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--AGYDIVLTVHDEIVCE 635
                             +    I Q  + DI+   M           ++L VHDE++ E
Sbjct: 814 ------------------EGINAIFQGSAADIIKMAMNKIMHSSLESKLLLQVHDELIFE 855

Query: 636 TPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            P       A  +  +M +  +    +PLK      + + 
Sbjct: 856 APKEIASKEAKKIALIMENIAT--LRVPLKCSISIGENWG 893


>gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824]
 gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824]
 gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018]
          Length = 871

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 95/686 (13%), Positives = 197/686 (28%), Gaps = 156/686 (22%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-----HDPVMPQVLKEAL 61
           D E      +    +        +       +     + D       +   + + LKE  
Sbjct: 319 DTEIYMSYSIGNGELYSKI---YIDTIFMKVE-EKTYIVDLKKIIEQNREDVLKDLKEFF 374

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           EN  +  + H+S    TVL     + I       T +             LK   E + L
Sbjct: 375 ENKKIAKIIHDSKNMYTVLMKN-GIKIENLA-FDTAIAEYLINPSKKEYNLKDAAEEMLL 432

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                E+    I      +                     EY   D+    E++ ++E  
Sbjct: 433 LDLTGEDNDIKIKEVYVMDKIYNKLK----------DKIKEY---DMD---ELYYKVE-- 474

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
                 L  +  ++   G+ V+      +     VE  K+  E+ ++      +    ++
Sbjct: 475 ----LPLIEVLSSMESEGFKVEKNKLQQIGDKFTVEIAKVKDEIYNMAG-EEFNISSPKQ 529

Query: 239 LKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           L   LF +  L +   T+   +T   VL       P   +V   R   ++     +  L 
Sbjct: 530 LGKILFEKLDLPVIKKTKTGYSTNAEVLEKLMDKHPIIEKVVYYRQ-LTKLYSTYVEGLK 588

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
             ++ D ++  +      + TGR S      QN+P  +    E                 
Sbjct: 589 PVIDVDEKIHSSFNQTVTT-TGRLSSTEPNLQNIPIKNEMGRE----------------- 630

Query: 356 PLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   +R   +   +   ++ AD + IE RVLA +A ++  + AF+   D++  T +
Sbjct: 631 --------IRKVFVPENDNCIILSADYSQIELRVLAHIADDENLINAFKHHSDIHTKTAS 682

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F V   +VT   R+  K +   + Y     +                           
Sbjct: 683 EVFRVPIEEVTSRMRSNAKAVNFGIVYGISDFSL-------------------------- 716

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                             A +        +     + +++  V +   ++    ++    
Sbjct: 717 ------------------AQDIKVSKKEAKEYIDTYFERYPNVKKYLEDIVVTAKK---- 754

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                 N+ +     R  +  ++ ++   +        R     
Sbjct: 755 ----------------------NMYVNTIMNRRRIIPEIASSNKIVKG---FGERLAMNT 789

Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  +Q  + D++   M+N        K    ++L VHDE++      +      L 
Sbjct: 790 P------IQGSAADLIKLSMVNVYSKIKQLKLKSRLILQVHDELILNVHKDELEKVKELV 843

Query: 649 HL-MTSNPSWAKGLPLKAEGYESKRY 673
            L M         +PL+ +      +
Sbjct: 844 KLEMEEVME--LKVPLEVDIESGNTW 867


>gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
 gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435]
          Length = 876

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 93/663 (14%), Positives = 198/663 (29%), Gaps = 131/663 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81
           Y +D  ++ F F +D     + D       P+ L + LEN     + +++   +   V+ 
Sbjct: 328 YLQD-TILKFGF-YDGVDHVVIDSDQLKEYPE-LIKWLENETTEKIVYDAKKTY---VVA 381

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              ++DI  +     ++ +        +  V     +S+      ++ I+ + KG+    
Sbjct: 382 HRLDIDIK-NIVFDVMLASYIIDPSRTIDDVNSV--VSNYNQNFVQDDISIYGKGKKRHV 438

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
             D     H  +       CK ++    E  ++++ L + E  L  +   + + G   D+
Sbjct: 439 PEDTILNKHIASITEAIYACKREMVAELESHQQIDLLLNLELPLARILSEMEETGIYTDI 498

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                +   +  +   L   +         +    ++L   LF    L +   T+   +T
Sbjct: 499 NDLRQMQSEIQGKLDLLISNIHEAAG-EEFNINSPKQLGVVLFETLELPVIKKTKTGYST 557

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    +   R   S+     +  L + ++ D R+        A +TGR
Sbjct: 558 AVDVLEQLQGQHPIIDYILEYRQ-LSKLQSTYVEGLQKVISKDNRIHTRFNQTLA-QTGR 615

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377
            S      QN+P       +                         +R      S    ++
Sbjct: 616 LSSVDPNLQNIPVRLEEGRK-------------------------IRKAFKPTSNDSVIL 650

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +  ++   +AF   +D++  T  + F+V   +V    R   K +  
Sbjct: 651 SADYSQIELRVLAHITQDESMKEAFINEKDVHTATAMKVFDVEANEVNALMRRQAKAVNF 710

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++    +                                  
Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLN 726

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +     +      V +  +++    +    +G                      
Sbjct: 727 ITRKKAKAFIDDYLASFPGVKQYMSDI---VKDAKADGYVETLLH--------------- 768

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   R     D+ +             R            +Q  + DI+   M+  
Sbjct: 769 --------RRRYIPDINSRNF---NLRGFAERTAMNTP------IQGSAADIIKLAMVEF 811

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670
            +          ++L VHDE++ E P  +  + S+ +  +M         +PLK +    
Sbjct: 812 DRQIKQTSYHAQLLLQVHDELIFEVPANEVEDFSLFVEEIMEHALQ--LDVPLKVDSNYG 869

Query: 671 KRY 673
             +
Sbjct: 870 STW 872


>gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
 gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758]
          Length = 882

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 102/674 (15%), Positives = 189/674 (28%), Gaps = 163/674 (24%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-------FE 76
           +AE+  +      F    +      +   M + L EAL         H +        F+
Sbjct: 344 FAENAEIGGIGISFGKEKIYCIPAGNGYSM-EELLEALV--------HVAKHAGRFVVFD 394

Query: 77  RTV-LKACFNLD-IPIHRWICTLVLARSNGL---PSALKAVG-EALKLSSQKMEEGKELI 130
               L     L+     +   ++V A            + V  E L L      E ++++
Sbjct: 395 LKSSLPYLKGLEGAAEEKCFDSIVAAYLLNPLKNDYGFEDVAQEHLGLMIDPKTELEKMV 454

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
                           K    E W+LF E                      E  L +   
Sbjct: 455 CYEAYAAFASSEVLEEKLKKEEMWKLFTE---------------------IEMPLVFTLF 493

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  V+     +  + +  +  +L++E+  L      +    ++L   LF    L 
Sbjct: 494 HMEQNGVRVEAEELKSYGEQLGGKIVQLEKEIYELAG-EEFNINSPKQLGVVLFEHLSLP 552

Query: 251 LEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRG 306
               T+   +T   VL       P   ++   R   ++      + L   ++ D  R+ G
Sbjct: 553 NGKKTKTGYSTAADVLDKLAPDYPIVAKILEYRQ-LAKLKSTYADGLAVFIHEDDHRIHG 611

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P                                 +R 
Sbjct: 612 KFNQ-TVTATGRISSTEPNLQNIPARVELGR-------------------------LIRK 645

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
             +  EG   V AD + IE RVLA  +G+   ++A+   +D++  T ++ F+    +VT 
Sbjct: 646 VFVPEEGYVFVDADYSQIELRVLAHCSGDAALIEAYREAKDIHRITASQVFHTPFDEVTD 705

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
            QR   K +   + Y            +  L+                            
Sbjct: 706 LQRRNAKAVNFGIVYG-----ISSFGLSQDLS---------------------------- 732

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                                  + + +  + +    L  A     E G  +        
Sbjct: 733 -----------ITRKEAAEYIDRYFETYPGIKKF---LDDAVAHAKEQGYVVTL------ 772

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                             GR     ++ ++            R            +Q  +
Sbjct: 773 -----------------FGRRRPVPELSSSNFMQRQF---GERVAMNSP------IQGTA 806

Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659
            DI+   M+   K          +VL VHDE++ ET   +E     +    M        
Sbjct: 807 ADIMKIAMIAVDKELRMRNMKSRLVLQVHDELLIETWKEEEEEVREILKEGMMHAAD--L 864

Query: 660 GLPLKAEGYESKRY 673
            +PL+ + +  K +
Sbjct: 865 SVPLEIDMHSGKNW 878


>gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168]
 gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168]
          Length = 870

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 101/655 (15%), Positives = 184/655 (28%), Gaps = 150/655 (22%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
               +  + ++          +LK  L +  V     NS  E TV     ++++      
Sbjct: 341 ISLGEGNLYIF--TDINEAISILKPILTDISVKKYILNSK-ECTVFLKKHDIELE-GLVF 396

Query: 95  CTLVLARSNGLPSAL----KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
             L+          L      + + L LS  +  +   L   F             K   
Sbjct: 397 DPLLAYYLLKPSGKLPGLRDLLDQELSLSLPEDIKEDNLYLVFMDNIFKLAEGMVPKLED 456

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
            E   LF      D+ +                    +   +   G  VD     +L++ 
Sbjct: 457 MELIELF-----NDIEIPL----------------ITVLAELEYNGIKVDAEYLESLSRK 495

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
            + E   L+ ++  L      +    ++L   LF + GL +   T+   +T  +VL   +
Sbjct: 496 WEEELNGLESKIHELAG-EKFNINSPKQLGGILFEKLGLPVIKKTKTGYSTGAKVLEKLE 554

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPP 326
              P    +   R    +     ++ L   +N D GRL  +   +  + TGR S      
Sbjct: 555 DKHPIIPLISEYRQ-LMKLKSTYVDALPPMINPDTGRLHTSFNQMV-TATGRLSSTEPNL 612

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIE 385
           QN+P  +    E                         +R   I   E   L+ AD + IE
Sbjct: 613 QNIPVRTDEGRE-------------------------IRRAFITENEDWVLLAADYSQIE 647

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA ++ ++    AF TG+D++  T +  F V P +VT + R   KV+          
Sbjct: 648 LRVLAHISDDEGLKAAFNTGQDIHTQTASEVFEVEPDEVTPNMRRHAKVIN--------- 698

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A +          
Sbjct: 699 -----FGIAYGMSP------------------------------YGLARDLGISRQEASD 723

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + ++ + V +      +   +    G                              
Sbjct: 724 YINKYFERFTGVKDYM---ERVVTEAKTKGYVTTIFN----------------------- 757

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
           R     ++ +             R            +Q  + DI+   M+          
Sbjct: 758 RRRYIPEINSRN---YHRRSFAERTAINTP------IQGTAADIMKLAMIKVYNRLKENG 808

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
               I+L VHDE++ E P  D    + +    M         +PL         +
Sbjct: 809 SPARILLQVHDELILEVPREDLTEMARIVKSEMEKAVD--MKVPLVVNLESGPNW 861


>gi|116872994|ref|YP_849775.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741872|emb|CAK20996.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 875

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 79/661 (11%), Positives = 176/661 (26%), Gaps = 142/661 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
                       +            +E +E+    +V     ++     V        I 
Sbjct: 333 IGLAIHSDQGTYFFTKETAENSVSFREWVESAQTKVV-----YDAKKTMVAMNRMGFAIS 387

Query: 90  IHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEE---GKELIARFCKGETHECLY 143
                  ++ +       ++     V      +  + +E   GK       +        
Sbjct: 388 GIT-FDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAVYGKGAKRSTPEESIVAGHL 446

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
            R       A     +    D+    ++      +   E  L ++   +  +G  VD   
Sbjct: 447 AR----KAVAIAELEKRLVDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTER 498

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
              +   +      L+  + SL      +    ++L   LF +  L     T+   +T  
Sbjct: 499 LENMKVELAGRLKTLETSIHSLAG-EEFNINSPKQLGVILFEKLELPPVKKTKTGYSTAA 557

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL S         ++   R    +     +  L++  + +     T      ++TGR S
Sbjct: 558 DVLESLSGKHDIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLS 616

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379
                 QN+P       +                         +R   +    G K+  A
Sbjct: 617 SVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKIFSA 651

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +    
Sbjct: 652 DYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQEEVDSLMRRQAKAVN--- 708

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++    +                                    
Sbjct: 709 -----------FGIVYGISDYGLSQ------------------------------NLGIT 727

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +     +   +  V E  +++ +  ++  +     I                    
Sbjct: 728 RKDAKDFIDRYFVSYPAVKEYMHDIVRFAKE--KGYVETILH------------------ 767

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-- 617
                 R     ++ +             R            +Q  + DI+ + M+    
Sbjct: 768 ------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMSE 812

Query: 618 ----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
                +    ++L VHDE++ E P+ +      +   +M +       +PLK +      
Sbjct: 813 RLESEQLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDT 870

Query: 673 Y 673
           +
Sbjct: 871 W 871


>gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4]
          Length = 876

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 92/661 (13%), Positives = 199/661 (30%), Gaps = 131/661 (19%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
           +  +I +     +     +         +  +E L +     V +++      LK    L
Sbjct: 329 NGKIIGYGLS--NQSGHYFIPTDIASESEGWQEWLRDESKEKVVYDAKKSIVALKRQ-GL 385

Query: 87  DIPIHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           ++       +L+ A         +    VG+   LSS + +E       + KG       
Sbjct: 386 ELNGVS-FDSLLAAYIINPAQNHEDFASVGKEYGLSSVQSDE-----QVYGKGAKQAVPN 439

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
                 H              +    +   +       E  L ++   +  +G  VD   
Sbjct: 440 LDALSEHVARKASMLWDLTEKLKTALKENHQDALFFDLELPLAFILGEMEYQGVKVDRTR 499

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
             ++ + +  +  +L++++  L      +    ++L   LF +  L +   T+   +T  
Sbjct: 500 LTSMGKELGGKLKELEEKIYDLAG-ETFNINSPKQLGVILFEKLELPVIKKTKTGYSTSA 558

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL   +        + + R    +     +  L++ ++ D     T      ++TGR S
Sbjct: 559 DVLEKLQSKHEIVEYILHYRQ-LGKLNSTYIEGLLKVIHEDSDKVHTRFNQALTQTGRLS 617

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379
                 QN+P       +                         +R   +   EG  +  A
Sbjct: 618 STDPNLQNIPIRLEEGRK-------------------------IRQAFVPSKEGWVIFAA 652

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA ++G++  ++AF+  ED++  T    F+V+   VT + R   K +   +
Sbjct: 653 DYSQIELRVLAHISGDEKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEMRRHAKAVNFGI 712

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y            +  LN+             + +   + +   +     +        
Sbjct: 713 VYGIS-----DFGLSQSLNITRKEAGEFIERYLDTYPAVKEYMEDIVVEARDKGYVSTL- 766

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                                                     +RR +P +  +       
Sbjct: 767 ----------------------------------------LNRRRYIPELTSRNFNLRSF 786

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                            R+ +NT                   +Q  + DI+ + M++  K
Sbjct: 787 ---------------GERTAMNT------------------PIQGSAADIIKQAMIDMAK 813

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
                     ++L VHDE++ E P ++      +   +M +       +PLK +      
Sbjct: 814 RLEEENIEAKLLLQVHDELIFEAPQSEIEKLKTMVPDVMENAVE--LNVPLKVDFAFGPT 871

Query: 673 Y 673
           +
Sbjct: 872 W 872


>gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
 gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1]
          Length = 883

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 94/638 (14%), Positives = 182/638 (28%), Gaps = 148/638 (23%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL- 109
                VLK   E   V    H++  +   +    ++++       T+V A      ++  
Sbjct: 373 DPCLTVLKAICECESVKKYFHDAK-QALWMLHHHSIELKALA-ADTMVSAYLLNPTASNY 430

Query: 110 --KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
               V     L      EG+              +  R +   R A +LF +  +     
Sbjct: 431 DINDVALEH-LGMVLPAEGE------------TAMASRAEAIRRLAQKLFEKLAERQEDR 477

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                      +  E  L  +   +   G  VD      ++  +      L  ++  L  
Sbjct: 478 LL---------TQVELPLVRILSEMEIAGVAVDKQGLQDMSVELQTVTETLTTKIHELAG 528

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    ++L   LF +  L +   T+   +T   VL    +       +   R   +
Sbjct: 529 -ENFNINSPKQLGPILFEKLKLPVLKKTKTGYSTDAEVLEKLAEEHEIVALILEYRQ-MA 586

Query: 285 RSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           +      + L   ++   GRL  T      + TGR S      QN+P    +  +     
Sbjct: 587 KLKSTYTDGLAALVDPQTGRLHSTFHQ-TVTATGRLSSAEPNLQNIPIRLETGRK----- 640

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   I  + G  ++ AD + IE RVLA M+ ++  L AF
Sbjct: 641 --------------------IRKVFIPRQRGNLILTADYSQIELRVLAHMSQDESFLDAF 680

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G+D++  T +  F V   QVT + R+  K +   +                G++    
Sbjct: 681 RQGQDIHTRTASEVFGVPMDQVTSEMRSRAKAVNFGIV--------------YGISDFGL 726

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                         A +        +     +  +   V +   
Sbjct: 727 ------------------------------ARDLKVSRKEAQGYIDHYFARCPGVRQY-- 754

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            + +  ++  E G                              R     ++ +       
Sbjct: 755 -IDRVIKEAKETGYVNTLLN-----------------------RRRYLPELFSKNF---N 787

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCET 636
                 R            +Q  + DI+   M+              +VL VHDE++ + 
Sbjct: 788 IRNFGERAAMNTP------IQGTAADIIKLAMVKISQQLKEQNLSSQMVLQVHDELIFDA 841

Query: 637 PDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
           P+ +  +  ML    M +       +PL  +      +
Sbjct: 842 PENEIESLIMLVRQSMENALQ--LDVPLVVDIKLGPNW 877


>gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
 gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327]
          Length = 950

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 99/694 (14%), Positives = 193/694 (27%), Gaps = 152/694 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVLKEA 60
            +D ET S              +  +   +F  +                      LK  
Sbjct: 380 SVDTETTSLD----------TFEAELAGISFSLEPGEAFFVYFGETGLDAKTTVAKLKPL 429

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
           LEN ++     N  ++  VLK    +++       T++ +          L  +      
Sbjct: 430 LENPEIGKTGQNLKYDILVLKNY-GVELQPVE-FDTMLASYVLDPESRHNLDDMAALH-- 485

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L  +  K +                 +   +Y   D  +T ++   L   
Sbjct: 486 ----------LSRQTVKYDELVGTGKSAIGIFEVEPQKLSDYACQDADITLKLRGELAAK 535

Query: 179 SSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                EL  +              +  +G  +D      L   V+ E   L + +     
Sbjct: 536 LEATPELLEVCRTLEFPLVRVLADMEHQGVSIDTEHLAKLAVKVNEELVGLTERIHEAAG 595

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    ++L   LF    L  +  T+   +T  +VL     L P A +V   R    
Sbjct: 596 -ETFNIDSPKQLGHILFDVLKLPTKKATKTGYSTNVQVLEELALLNPIAAEVLEYR-SLQ 653

Query: 285 RSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           +     +  L + +++  GRL  +      + TGR S      QN+P  +   +E     
Sbjct: 654 KLKGTYIEALPKLLHAATGRLHTSFNQSI-TATGRLSSSNPNLQNIPIRTDLGKE----- 707

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   I S     L+ AD + IE RV A ++G+   ++AF
Sbjct: 708 --------------------IRRAFIPSNPENLLLSADYSQIELRVAAELSGDPMLIEAF 747

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
              ED++  T    F+    +VT D R   K +   + Y       Q    +  L +   
Sbjct: 748 RNHEDIHAATARVIFDT--DEVTSDMRRKAKEVNFGVLYG-----IQPFGLSQRLGIPQK 800

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 ++   ++    +  +   E   +       +G          R+    ++    
Sbjct: 801 EAKEIIDTYMAKYPGMFSALQTTVEEARKLGYVTTLMGR---------RRYVPDLNSPNG 851

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            + +A E            +      +           M    R L    + +       
Sbjct: 852 NIRKAAE------------RVTMNTPIQGTAADIIKYAMCTISRRLKEERLNS------- 892

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
                                          ++               E++ ETP  ++ 
Sbjct: 893 -----------------------------VMLLQVHD-----------ELLFETPADEQS 912

Query: 643 NASMLYH-LMTSNPSWA--KGLPLKAEGYESKRY 673
             + L    M    S    + +P++ E    K +
Sbjct: 913 RLTELVEKCMVDAASKCGVRNVPVEVETGVGKNW 946


>gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
 gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489]
          Length = 895

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 102/699 (14%), Positives = 207/699 (29%), Gaps = 162/699 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----- 56
                D ET S                 ++ F+F  +          H+ +  +      
Sbjct: 330 DIFSFDTETTSLE----------VRSAKIVGFSFSVNGVDSYYVPIAHNYLGVEEQVSYE 379

Query: 57  -LKEALE--NTDVTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLPSALKAV 112
             KE +E       ++ HN  ++  +LK  F+  +    +   +++LA          A+
Sbjct: 380 CAKEFIEYIFGCKYVIGHNLKYDLEILKTNFDFVLQDFSKIRDSMLLAWLLQS----DAL 435

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              L    +K     E+I           +  + +   +   +   EY   D     +++
Sbjct: 436 CN-LDFLMKKY-FNHEMIHYKD-------IVHKKENFSQILIQYACEYASEDAAACYQLY 486

Query: 173 KRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            +L+ L  +                   +   G  +D+     L         ++ +E+ 
Sbjct: 487 FKLKGLVDERLMEIAKSVEFPFIQSLMNMELIGIKIDLEFFQELILESRERLHQISEEIF 546

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNR 280
           +L      +    ++L T LF E  L     T++   T + VL+S     P   ++   R
Sbjct: 547 AL-ANKRFNLNSPQQLATILFEELNLQAGKKTKSGFSTSESVLNSLYDTHPIIPKILEYR 605

Query: 281 MRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
               +     +  L E   +D   R+  +    G + TGR S      QN+P  +     
Sbjct: 606 -EFFKLYSTYIEPLSEHAKADLQHRIYTSFMQTG-TSTGRLSSKNPNLQNIPVKTAQGRR 663

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   IA E   LV  D + IE R+LA  + ++  
Sbjct: 664 -------------------------IRRGFIAKENHLLVSLDYSQIELRLLAHFSEDEAM 698

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           ++AF    D+++ T  + F      + +++RAI K +                    G+ 
Sbjct: 699 IEAFLKDADIHLETAKKIFG---EDMAQEKRAIAKSINF--------------GLIYGMG 741

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                           + +          +   + +      V 
Sbjct: 742 P------------------------------KKLSETLKITFQEAKTYIQNYFTSFPTVK 771

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E      +   +        +  + R      +++ +    L                  
Sbjct: 772 EFLKNQEEFILE--NGYSKTLLGRMRKFDFEGVQEYQKAAFLR----------------- 812

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--YDIVLTVHDEIVCET 636
                            +    I Q  + DI+   M   TKA     ++L VHDE++ E 
Sbjct: 813 -----------------EGINAIFQGSAADIIKMAMNAITKANLESKLLLQVHDELIFEA 855

Query: 637 PDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           P    +  +  +  +M +  +    +PLK      + + 
Sbjct: 856 PKEIAKKESEEIAKIMENITT--LKVPLKCTISIGENWG 892


>gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4]
 gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4]
          Length = 887

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 82/655 (12%), Positives = 190/655 (29%), Gaps = 127/655 (19%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           F  G+ D                  K   ++ +      ++      LK     ++ I  
Sbjct: 342 FCIGWGDDQQIYVAEPEVVFASDDFKNWAKDKEAQKQVFDAKRTYVALKRQ---NVDIAS 398

Query: 93  W-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                L+ +         K + E    +  +  E     + + KG       ++      
Sbjct: 399 IDFDILLASYLLNTKDNSKDLSEVA--TEHEYYEVSSDESVYGKGAKIAIPEEKTIIYDH 456

Query: 152 EAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
            A +          +    E  ++ +  +  E  L  +   +   G  V+      + + 
Sbjct: 457 IARKIKAIRILSKQLGENLEKNEQTKLFNEMELPLSMVLAEMELTGVKVNDKRLMEMKEE 516

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
             +  T ++Q +  L      +    ++L   LF + G  +   T+   +T   VL   +
Sbjct: 517 FAIRLTDIEQRVYELAG-EKFNLNSPKQLGVILFEKMGYPVIKKTKTGYSTAVDVLEQLR 575

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           +  P    + + R   ++     +  L++ ++       T      ++TGR S      Q
Sbjct: 576 EQAPIVEHILDYRQ-IAKIQSTYIEGLLKVIDKKTGKIHTRYMQTIAQTGRLSSVDPNLQ 634

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEA 386
           N+P       +                         +R   + S EG ++  +D + IE 
Sbjct: 635 NIPIRLEEGRK-------------------------IRQAFVPSHEGWEIFASDYSQIEL 669

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGA 445
           RVL  ++ ++   +AF  G+D++ +T  + F + +P +V+ + R   K +          
Sbjct: 670 RVLGHVSDDKLLKEAFIEGQDIHSSTAMQVFGIGSPEEVSSEMRRRAKAVNF-------- 721

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++    +                                        + 
Sbjct: 722 ------GIVYGISDYGLSQ------------------------------NLGISRKEAQH 745

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               + +K+  V     ++ +  +                              +     
Sbjct: 746 FIDTYFEKYPGVKTYMEDIVREAKD--------------------------KGFVETLFQ 779

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
           R     ++ +             R            +Q  + DI+   M+   +      
Sbjct: 780 RRRYLPEINSRNF---NLRSFAERTAINTP------IQGSAADIIKIAMIKMDQKLKEST 830

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               ++L VHDE++ E P  +     +++  +M         +PLK +    K +
Sbjct: 831 MKATMLLQVHDELIFEAPKEEIEQLRALVVEVMEGAVE--LSVPLKVDSNSGKSW 883


>gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
 gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216]
          Length = 959

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 87/692 (12%), Positives = 183/692 (26%), Gaps = 146/692 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC--VHDPVMPQVLKEA 60
               D ET                +  ++  +     +          +      +++  
Sbjct: 389 EFCFDTETT----------GFDIFNDRIVGLSLAVRPYEAWYIPFNESNTAEYAALIRPL 438

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
             +  +  +  N  F+  VL     ++I   R   T++L       S       A++  +
Sbjct: 439 FADGKIAKIGQNIKFDLMVLAR-LGVEIR-GRLYDTMILHYLLDPESRHNMDALAMRYLN 496

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
            +      LI              R       +     EY   D  VT  + + L P   
Sbjct: 497 YRPISITSLI----------GKGARQLTMDMISLERVAEYAAEDADVTLRLKQVLWPKVE 546

Query: 178 -------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                      E+ +  +   I   G  +D          ++     L+ ++  L     
Sbjct: 547 ELDLAGLYLEIEEPMIAVLAEIEMAGVRIDSEALAEYAVELNKTLNDLEGDIRRLADEPS 606

Query: 231 SSSRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
            +     +L   LF +  +     +T+    +T +  L +         ++   R    +
Sbjct: 607 LNVNSARQLGEVLFGKLRIAEKPKMTKTKQFSTEEEYLQTFAHKYEIVDKILEYR-GVKK 665

Query: 286 SAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                +  L   +N   G++  +      + TGR S      QN+P              
Sbjct: 666 LLSTYVEALPLLVNPVTGKIHTSFNQAV-TATGRLSSTNPNLQNIPVRDELGRR------ 718

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +R   I S+    L+ AD + +E R++A ++G++  + AFE
Sbjct: 719 -------------------IRKAFIPSDDEHLLLSADYSQVELRLMAHLSGDESLIAAFE 759

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            GED++  T AR F    A+V  D+R   K     + Y   A        +  L++    
Sbjct: 760 HGEDVHAATAARLFGKEVAEVDSDERRKAKTANFGIIYGISA-----FGLSQRLDIPRKE 814

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                      +   + +   + E            G                     N+
Sbjct: 815 AKEIIEGYFASYPKVKEYMDRVVEEAKRDGYVSTIFGR----------------RRYLND 858

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS-GRSLVYRDVGNNRSYLNT 582
           +         N  A    +R  V         + + + +    R      + +       
Sbjct: 859 I------ASRNAVARGLAERNAVNAPIQGSAADIMKIAMIRVSRRFREEGIRSKV----- 907

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
                                          ++                +V +   +++ 
Sbjct: 908 -------------------------------ILQVHDE-----------LVVDMLRSEQE 925

Query: 643 NASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               +    M S    A  + L  +      +
Sbjct: 926 RVIAIVTEAMESAA--ALRVRLVVDCGVGDNW 955


>gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 100/691 (14%), Positives = 190/691 (27%), Gaps = 132/691 (19%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQVLK 58
           D ET     L       +     ++  A              H           + Q L 
Sbjct: 323 DLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDIEQVLQRLA 382

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG-EAL 116
             L + +    AH+  ++  VL+         H    T++ A   G  +  LK +    L
Sbjct: 383 PFLRHPEKQRYAHHGKYDALVLERAG--FPRPHIDFDTMIAAYLLGENAVGLKELAFTKL 440

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
               +++ E                   +     R       +Y   DV  T  + + L 
Sbjct: 441 GWEMEEITEL-------------IGRGKKQLTMDRAEIARVTQYACADVEATYRLVEVLR 487

Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P                 L  +   +   G  +DV     L+ ++D +   L++ +  L 
Sbjct: 488 PQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELA 547

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                +    ++L T LF E GL     T+   +  Q VL + +   P    +   R   
Sbjct: 548 GHP-FNINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLL 606

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     ++ L   ++       T+     + TGR S      QN+P        + +  
Sbjct: 607 -KLKSTYVDALPRQVHPQTGRVHTIFHQTVAATGRLSSSDPNLQNIPARGELGLAVRRAF 665

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                                    IA E   L+  D + IE R++A  + +   L+AF 
Sbjct: 666 IADNRPGYR----------------IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFA 709

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T +  F V    VT + R I KV+   + Y       Q         ++   
Sbjct: 710 EGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGM-----QAYGLARDTGMSRQD 764

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                 +  + +     +    +    E    +   G    R        +    +    
Sbjct: 765 AQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGR--RRYLPEITSSNPARRQ---A 819

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +        G A    K   + +                 R L  R + +        
Sbjct: 820 AERMAVNMPLQGTAADIMKLAMIAVH----------------RPLAERGLRS-------- 855

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
                                         ++        +VL        E P+++   
Sbjct: 856 ----------------------------RMLLQVHDE---LVL--------EVPESELAT 876

Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            + L    M+        +PL+ +      +
Sbjct: 877 TTELVTTRMSRVVE--LSVPLEVDAKAGPNW 905


>gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
 gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16]
          Length = 900

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 105/661 (15%), Positives = 193/661 (29%), Gaps = 134/661 (20%)

Query: 33  FAFGFDDHPVEL---WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
               F+  P E        +       + +AL   D+  V H +  E    K   +  I 
Sbjct: 350 VCVSFEPSPTEAHGALLFANRLENYNQVLQALFAPDIQKVVHGAK-ELE--KELMDQGIE 406

Query: 90  IHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                  T + A           + E L + +   +E  +       G         ++ 
Sbjct: 407 PQGIRFDTELAAYLLSPTDGSYDL-EKLGI-TYYNQEFAKAKEYLTPGAFDSLFSLDSEG 464

Query: 149 NHREAWRLFGEYCKG-DVTVT-----REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                   F  +C   D          E  K  +     E  L  +   +   G  VD  
Sbjct: 465 QSAGPMGAFLSHCALIDALYETLSQRLEELKLTQLYGEIELPLCPVLAEMERSGVLVDRK 524

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
                 + +     K    +  L      +    ++L   LF + GL     T+   +T 
Sbjct: 525 ALAAFGEALAQGIEKDQALIYELAG-EEFNINSTQQLGKILFDKLGLPPVKKTKTGYSTN 583

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +   P    + + R   ++      + L + +  DGR+         + TGR 
Sbjct: 584 AEVLEKLRGKHPIIEAILDYRQ-LTKLKSTYADGLGKVIAPDGRIHTCF-QNTVTATGRL 641

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  +                          +   +R   +A+ GK LV A
Sbjct: 642 SSTEPNLQNIPIRT-------------------------QLGAQLREMFVAAPGKVLVDA 676

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA MAG+Q  ++ F +G D++  T ++ F V P QVT   R   K +   +
Sbjct: 677 DYSQIELRLLAHMAGDQAMIEGFHSGADIHTITASQVFGVTPDQVTPQMRRSAKAVNFGI 736

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++  + +  +                                 
Sbjct: 737 V--------------YGISPFSLSQDI------------------------------GVS 752

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +     +   +S V    + + +  +Q                          +  
Sbjct: 753 VQQAKEYMDKYFAHYSGVRAYMDGVVEQGKQ--------------------------DGY 786

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +    GR     ++ ++      T     R            +Q  + DI+   M+    
Sbjct: 787 VATLFGRRRWLPELKSSNF---NTRSFGERVALNMP------IQGTAADIIKLAMIRVRD 837

Query: 620 AGYD------IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKR 672
                     +VL VHDE++ E P+ +      ++   M         +PL AE +    
Sbjct: 838 RLLREGLEGRLVLQVHDELIVECPEAEAETVCRLVKEEMEGVCQ--LSIPLLAETHAGTT 895

Query: 673 Y 673
           +
Sbjct: 896 W 896


>gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1]
 gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23]
 gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 923

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 96/700 (13%), Positives = 186/700 (26%), Gaps = 157/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL------ 57
            +D ET S   +             +I  +F  +          HD    P  L      
Sbjct: 346 ALDTETDSLDPM----------QAVLIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQAL 395

Query: 58  ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
              +  LE+  V  V  +  ++  VL+    + +  +    TL+ +       A   +  
Sbjct: 396 ALLQPLLEDAAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDMDT 453

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G E +              +  P      +   +Y   D  +T  +
Sbjct: 454 LARRH--------LGYETMKYV----DLVGKGAKQIPFSHVGVQEATQYAAEDADITLRL 501

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  + + I   G  +D    +  +  +        Q
Sbjct: 502 HCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQ 561

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 562 KAMDLAGRH-FNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVI 620

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++        L E ++   GR+       GA+ TGR S      QN+P  +  
Sbjct: 621 LEYR-SLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD 678

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 679 GRR-------------------------IRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++    A  F     +VT ++R   K +   L Y   A          
Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSA-----FGLAR 768

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L ++            + +    +F    ++   +    +   G       + +    +
Sbjct: 769 QLGISRGEAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGR------RLYLNSIA 822

Query: 516 RVSELWN-ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             ++       +A       G A    KR  V +                          
Sbjct: 823 SGNQTQRAGAERAAINAPMQGTAADIIKRAMVAVDGWLGVGG------------------ 864

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                         R                        ++               E+V 
Sbjct: 865 -----------HRERA---------------------LMILQVHD-----------ELVF 881

Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E  +         +   M +       +PL  +      +
Sbjct: 882 EADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919


>gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
 gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170]
          Length = 893

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 107/690 (15%), Positives = 209/690 (30%), Gaps = 148/690 (21%)

Query: 14  IDLTKCGI----CKYAEDVCVIL----FAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            D+ K G+      + ED  +       A         +++   D    +  K+  E  +
Sbjct: 324 DDIEKDGVFYFKSIFEEDNYIHSNAYKIAIKTSSSKTYIYN--PDEKFVEKFKKYFEADN 381

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
           +  V+ +   +  +      ++I +  +  T+++        +   +         K   
Sbjct: 382 IKKVSFDIKEDIVLFDK-LGINISL-PYDDTMLMHYLIDPSRSSYDL---------KTFS 430

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEY------CKGDVT--VTREIFKR--L 175
              L       E         K          G+Y         D    +T+++ +    
Sbjct: 431 QAFLKYEVENEEDLLGKGKSKKSYKDLDSDNLGKYLASIVNAIEDSLDILTQKLEELSMY 490

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           +     E +L  +   +   G+  D      +   V +E   L++ +  L      +   
Sbjct: 491 DLYKDCEIKLSKVLADMEITGFICDKNELEKIKDEVSLELGDLEKIIYELAGS-EFNINS 549

Query: 236 LEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++L   LF +  L +   T+   +T  +VL   +K  P   ++   R    +     L 
Sbjct: 550 PKQLSKILFEDLKLPIIKKTKTGYSTNAQVLEKLRKKHPIIEKIERYR-EMYKLKSTYLE 608

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           +L E ++ DGR+R T +    + TGR S      QNLP  +    +              
Sbjct: 609 SLEECIDEDGRIRSTFKQNV-TATGRLSSTEPNLQNLPIRTEEGRK-------------- 653

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                      +R    A +GK L+ AD + IE RVLA +A ++   +AF    D++  T
Sbjct: 654 -----------IRKAFKADDGKVLIDADYSQIELRVLAHLANDKKMQEAFSKDIDIHTKT 702

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +  F+    +VTK QR+  K +   + Y              GL+              
Sbjct: 703 ASEVFSTPIDEVTKLQRSEAKAVNFGIIYGIS---------DYGLS-------------- 739

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                          +   + +   +  + +   ++ +  ++  
Sbjct: 740 ---------------------QNLNIPRKRAKEYIENYLDTYPEIKKYMKDIVKKAKE-- 776

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                                   +  +     R     ++ +             R   
Sbjct: 777 ------------------------DGYVNTIFNRRRYVPEINSKNF---NVRSFGERVA- 808

Query: 593 YGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + DI+   M+    N  KA     IVL +HDEI+ E    D   A  
Sbjct: 809 -----LNTPIQGTAADIIKFAMINSYQNLQKAKIDAKIVLQIHDEIIIEASKKDLEKAKE 863

Query: 647 L-YHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +    M         L +  +  ES    K
Sbjct: 864 ILKSSMQDAVDLKVPLLVDIDSGESMYESK 893


>gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 876

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 94/687 (13%), Positives = 198/687 (28%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + +      +            F        +     D +    L  
Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +                    G++    +          
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNF--------------GIVYGISDYGLSQ--------- 723

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                         +     +      V +  +++ +  +    
Sbjct: 724 ---------------------SLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAK---- 758

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                                     +     R     D+ +             R    
Sbjct: 759 ----------------------ALGFVETLLHRRRYIPDITSRNF---NLRGFAERTAMN 793

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+              ++L VHDE++ E P ++  + S  
Sbjct: 794 TP------IQGSAADIIKLAMVKFAHKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c]
 gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c]
          Length = 923

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 96/700 (13%), Positives = 185/700 (26%), Gaps = 157/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL------ 57
            +D ET S   +             +I  +F  +          HD    P  L      
Sbjct: 346 ALDTETDSLDPM----------QAVLIGLSFAAEVGCAAYLPFGHDYPGAPVQLDRGQAL 395

Query: 58  ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
              +  LE+  V  V  +  ++  VL+    + +  +    TL+ +       A   +  
Sbjct: 396 ALLQPLLEDAAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDMDT 453

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G E +              +  P      +    Y   D  +T  +
Sbjct: 454 LARRH--------LGYETMKYV----DLVGKGAKQIPFSHVGVQEATRYAAEDADITLRL 501

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  + + I   G  +D    +  +  +        Q
Sbjct: 502 HCVLAPKLLAEPSLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQ 561

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 562 KAMDLAGRH-FNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVI 620

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++        L E ++   GR+       GA+ TGR S      QN+P  +  
Sbjct: 621 LEYR-SLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD 678

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 679 GRR-------------------------IRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++    A  F     +VT ++R   K +   L Y   A          
Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSA-----FGLAR 768

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L ++            + +    +F    ++   +    +   G       + +    +
Sbjct: 769 QLGISRGEAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGR------RLYLNSIA 822

Query: 516 RVSELWN-ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             ++       +A       G A    KR  V +                          
Sbjct: 823 SGNQTQRAGAERAAINAPMQGTAADIIKRAMVAVDGWLGVGG------------------ 864

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                         R                        ++               E+V 
Sbjct: 865 -----------HRERA---------------------LMILQVHD-----------ELVF 881

Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E  +         +   M +       +PL  +      +
Sbjct: 882 EADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919


>gi|313623618|gb|EFR93782.1| DNA polymerase I [Listeria innocua FSL J1-023]
          Length = 552

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 78/664 (11%), Positives = 176/664 (26%), Gaps = 148/664 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
                       +          V ++ +E+ +  +V     ++     V        I 
Sbjct: 10  IGLTVHSSQGTYFFTKETAEKSAVFRDWVESEETKVV-----YDAKKTMVAMNRIGFAIK 64

Query: 90  IHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                  ++ +       ++     V      +  + +E             +     R+
Sbjct: 65  -GVTFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AIYGKGAKRS 112

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVD 200
            P                  + + +   LE       +   E  L ++   +  +G  VD
Sbjct: 113 TPEEDIVAAHLARKAVAIAELEKRLVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVD 172

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +   +      L++ + SL      +    ++L   LF +  L     T+   +
Sbjct: 173 TQRLGNMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLELPPVKKTKTGYS 231

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL S         ++   R    +     +  L++  + +     T      ++TG
Sbjct: 232 TAADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTG 290

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376
           R S      QN+P       +                         +R   +    G K+
Sbjct: 291 RLSSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKM 325

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K + 
Sbjct: 326 FSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN 385

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    +                                 
Sbjct: 386 --------------FGIVYGISDYGLSQ------------------------------NL 401

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +     +   +  V E   ++ +  ++  +     I                 
Sbjct: 402 GITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH--------------- 444

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    R     ++ +             R            +Q  + DI+ + M+ 
Sbjct: 445 ---------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMIL 486

Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P+ +      +   +M +       +PLK +   
Sbjct: 487 MSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAF 544

Query: 670 SKRY 673
              +
Sbjct: 545 GDTW 548


>gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301]
          Length = 958

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 90/694 (12%), Positives = 195/694 (28%), Gaps = 150/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMPQVLKEA 60
               D ET                +  ++  +   +         +        ++++  
Sbjct: 388 EFCFDTETT----------GFDIFNDRIVGLSLAVEPFKAWYVPFLEKDTPEYAEIVRPL 437

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
            E+  +  +  N  F+  VL+    + I   R   T++L           + A+ E  K 
Sbjct: 438 FEDEKIAKIGQNIKFDLMVLRR-LGITIR-GRMYDTMILHYLLDPESRHNMNALAE--KY 493

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
            + K  E + LI              +             EY   D  VT ++ + L P+
Sbjct: 494 LNYKPIEIETLI----------GKGSKQLTMDLVNVERVKEYAAEDADVTLQLKQALYPM 543

Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
             +          E+ +  +   I   G  +D          ++ +  +L+  + +    
Sbjct: 544 IEQIGLQHLYFEIEEPMIAVLADIEMAGMRIDSEALAVYAVELNRKLAELEAAIRTEAGE 603

Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +     +L   LF +  +     +T+T    T +  L    +       +   R   
Sbjct: 604 PNLNINSARQLGEVLFGKMRIAEKPKMTKTKQFCTDEDYLQLFARKHRIVDLILEYR-GV 662

Query: 284 SRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            +     +  L + +N S GR+  +      + TGR S      QN+P            
Sbjct: 663 KKLLSTYVEALPQLVNRSTGRIHTSFNQAV-TATGRLSSTNPNLQNIPVRDDMGRR---- 717

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                +R   I   +   L+ AD + +E R++A ++G++  + A
Sbjct: 718 ---------------------IRKAFIPSDDDHLLLSADYSQVELRLMAHLSGDESLIAA 756

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE GED++  T A+ FN    +VT ++R   K     + Y   A        +  L +  
Sbjct: 757 FEHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISA-----FGLSQRLEIPR 811

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                  +     +   + +   + E   E        G                     
Sbjct: 812 KEAKEIIDGYFASYPGVKKYMDNVVEKAKEEGFVSTIFGR----------------RRYL 855

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           N++         N  A    +R  V         + + + + +                 
Sbjct: 856 NDI------ASHNAIARGLAERNAVNAPIQGSAADIMKIAMINVHRRF------------ 897

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILA-EGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                                   + + +    ++                +V +   ++
Sbjct: 898 ------------------------AAEGIRSRVILQVHDE-----------LVVDMLRSE 922

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +   + +    M S       + L A+      +
Sbjct: 923 QERVTAIVTECMESAAQ--LKVRLIADAGVGGNW 954


>gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
 gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522]
          Length = 874

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 82/675 (12%), Positives = 196/675 (29%), Gaps = 127/675 (18%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70
            SP  +    + +   +  ++  +   ++            +   + K+   +       
Sbjct: 311 YSPSAIVVEVLEENYHNAEIVGISI-VNEVGSYYIP-TEVAINSDMFKKWANDEKNEKWI 368

Query: 71  HNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            N+      L      DI +        + +      ++   + +      ++    K  
Sbjct: 369 FNAKQAIVSLGWN---DISLRGVTFDIQIASYLIDPSASSHEMADISN--RKRSYTVKSD 423

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
            A + KG+  +   +     H           K ++    +  ++ E     E  L  + 
Sbjct: 424 EAVYGKGKKRQVPEEEIVAQHLVRKAAAINVLKEELESELKENEQFELFKDLEMPLSIVL 483

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  ++      + + +  + + +++E+  L      +    ++L   LF +  L
Sbjct: 484 GHMEMNGISINKEELLQMGETLSDKLSTMEKEIHELAGV-EFNINSPKQLGEILFDKLQL 542

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL   +       ++   R    +     +  L++ ++       
Sbjct: 543 PVVKKTKTGYSTSADVLEQLRDKHEIVEKILLYRQ-LGKLNSTYIEGLLKVIHQKSGKIH 601

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T+     ++TGR S      QN+P       +                         +R 
Sbjct: 602 TIFNQALTQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRR 636

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             +   E   +  AD + IE RVLA ++ ++    AF+   D++  T    F+V+  +VT
Sbjct: 637 AFVPERENAVIFAADYSQIELRVLAHISNDENLTNAFKENMDVHTKTAMDVFHVSADEVT 696

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R   K +   + Y            +  L +         +   + +   + +   +
Sbjct: 697 SLMRRTAKAVNFGIVYGIS-----DYGLSQNLGITRKEAKKFIDRYFDSYPGVKEYMESI 751

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            E    +                                                 +RR 
Sbjct: 752 VEEARVNGYVTTM-----------------------------------------LHRRRY 770

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           +P +  +                        R+ +NT                   +Q  
Sbjct: 771 LPEITSRNFNLRSF---------------AERTAMNTP------------------IQGS 797

Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+ + M+   +          ++L VHDE++ E    +      L   +M +  + A
Sbjct: 798 AADIIKKAMVKMEEEMKEKGLKSTLLLQVHDELIFEVVQEEIETMKELVPKVMENAVNLA 857

Query: 659 KGLPLKAEGYESKRY 673
             +PLK +      +
Sbjct: 858 --VPLKVDFSFGDTW 870


>gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 895

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 95/662 (14%), Positives = 181/662 (27%), Gaps = 147/662 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACF-- 84
             +   A                  +    ++  L + D   VA    F+   +      
Sbjct: 361 AEIRGMAVAT-PKRAYYV--RFGERLELSDVRPWLVS-DRPKVA----FDLKSMAFALDA 412

Query: 85  -NLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             + +     W    + A            GE         E G+EL          E  
Sbjct: 413 HGIGLTSECGWQDVKLAAYLLNP-----QDGEVELSDVFARERGQEL------PAWEEGE 461

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            ++             E        T  + +        E  L ++   +   G+ V+  
Sbjct: 462 REKWLAYTASQLPPLFESLA----YTIRMQEMERLYQEVELPLAFVLAKMEITGFYVNRE 517

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
                 Q +     ++ QE+  L      +    ++L   LF + GL     T+   +T 
Sbjct: 518 KLVAFGQELTERIKRITQEIYDLAGTS-FNLNSPKQLGEILFDKLGLPALKKTKTGYSTS 576

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL     +     ++ + R+  ++     +  L++ +  +     T      + TGR 
Sbjct: 577 ADVLEKLAPMHEIVQKILDYRL-LAKLQSTYVEGLLKVIRKETGRVHTRFHQTLTATGRL 635

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378
           S      QN+P        L                         R     + +   +  
Sbjct: 636 SSSEPNLQNIPIRLEEGRRL-------------------------RQVFEPTYKDWVIFA 670

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA ++G++  + AF    D++  T A  F V P QVT   R   K +   
Sbjct: 671 ADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNF- 729

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    A                                   
Sbjct: 730 -------------GIVYGISDFGLAQ------------------------------NLNI 746

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +R  +++ +K   V    +E+    +Q  E G                       
Sbjct: 747 PQKEAKRFIESYFEKFPGVKRYMDEI---VKQARERGYVTTLMN---------------- 787

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R     D+ +             R            +Q  + D++   M+   
Sbjct: 788 -------RRRYLPDIHSRN---YQLRSFAERTAMNTP------IQGSAADLIKLAMVRID 831

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESK 671
           +A         ++L VHDE++ E P  +     +L    M +  +    +PLK +     
Sbjct: 832 RAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVRDNMENAMT--LSVPLKVDTAYGP 889

Query: 672 RY 673
            +
Sbjct: 890 TW 891


>gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12]
 gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon]
 gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 923

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 96/700 (13%), Positives = 186/700 (26%), Gaps = 157/700 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVL------ 57
            +D ET S   +             +I  +F  +          HD    P  L      
Sbjct: 346 ALDTETDSLDPM----------QAVLIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQAL 395

Query: 58  ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
              +  LE+  V  V  +  ++  VL+    + +  +    TL+ +       A   +  
Sbjct: 396 ALLQPLLEDAAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDMDT 453

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +             G E +              +  P      +   +Y   D  +T  +
Sbjct: 454 LARRH--------LGYETMKYV----DLVGKGAKQIPFSHVGVQEATQYAAEDADITLRL 501

Query: 172 FKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              L P               E  L  + + I   G  +D    +  +  +        Q
Sbjct: 502 HCVLAPKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQ 561

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQV 276
           +   L      +    ++L+  LF E  L           +T +  L +          +
Sbjct: 562 KAMDLAGRH-FNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVI 620

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   ++        L E ++   GR+       GA+ TGR S      QN+P  +  
Sbjct: 621 LEYR-SLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD 678

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +A  G+KL+  D + IE R++A ++G+
Sbjct: 679 GRR-------------------------IRRAFVAPSGRKLIACDYSQIELRIMAHLSGD 713

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              + AFE+G D++    A  F     +VT ++R   K +   L Y   A          
Sbjct: 714 AGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSA-----FGLAR 768

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L ++            + +    +F    ++   +    +   G       + +    +
Sbjct: 769 QLGISRGEAQDYIALYFDRFSGVRDFMENTRQQARDRGYVETVFGR------RLYLNSIA 822

Query: 516 RVSELWN-ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             ++       +A       G A    KR  V +                          
Sbjct: 823 SGNQTQRAGAERAAINAPMQGTAADIIKRAMVAVDGWLGVGG------------------ 864

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                         R                        ++               E+V 
Sbjct: 865 -----------HRERA---------------------LMILQVHD-----------ELVF 881

Query: 635 ETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E  +         +   M +       +PL  +      +
Sbjct: 882 EADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919


>gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 870

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 85/660 (12%), Positives = 183/660 (27%), Gaps = 158/660 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIP 89
               F +  +         +  + L      L  T V      + F+     +   ++  
Sbjct: 346 VGLAFSEKEIYTI-VAEGELTMEDLFSLVGTLAKTTVV-----ALFDVKAALSYVRIE-D 398

Query: 90  IHRWICTLVLARSNGLPSA----LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
                   + A       +    L    E L L   +  EG                  R
Sbjct: 399 PESCFDVGIAAYLLNPLKSDYTWLDVAAEHLSLLIDEKTEGYC----------------R 442

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVAL 203
           +       W            +  ++ +       +  E+  L     +   G  V+   
Sbjct: 443 SCYEAYVIWAAA-------AVLEEKMKESGTEELFRTIEMPLLFTLFAMEQAGVRVEAEA 495

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
                + +  +  +L++E+ +       +    ++L   LF +  L     T+   +T  
Sbjct: 496 LRFYGEQLGTKIVELEKEIYAQAG-EAFNINSPKQLGVILFEKLKLPHGKKTKTGYSTAA 554

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL       P   ++   R   ++      + L   + +DGR+ G       + TGR S
Sbjct: 555 DVLDKLAPEYPVVEKILEYRQ-LTKLKSTYADGLANYICADGRIHGKFNQ-TITATGRIS 612

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QN+P                                 +R   I  EG   V AD
Sbjct: 613 STEPNLQNIPVRMELGR-------------------------LIRKVFIPEEGYVFVDAD 647

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA  +G+Q  + A+   +D++  T ++ F+    +VT+ QR   K +   + 
Sbjct: 648 YSQIELRILAHCSGDQELIHAYREAKDIHRITASQVFHTPFDEVTELQRRNAKAVNFGIV 707

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L+                                          
Sbjct: 708 YG-----ISSFGLSQDLS---------------------------------------ITR 723

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                    + + +  + +  ++     ++                             +
Sbjct: 724 KEASEYIDRYFETYPGIKKFLDDTVAHAKE--------------------------MGYV 757

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618
           +   GR     ++ ++     +      R            +Q  + D++   M+     
Sbjct: 758 VTLFGRRRPVPELASSNFMQRSF---GERVAMNAP------IQGTAADVMKIAMIGVHRE 808

Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
               K    +VL VHDE++ E  + +  +   +    M         +PL+ + +  + +
Sbjct: 809 LTERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAAQ--LDVPLEVDMHTGRNW 866


>gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44]
 gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44]
          Length = 884

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 93/659 (14%), Positives = 183/659 (27%), Gaps = 125/659 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +  +   + L + D+     ++      LK   +
Sbjct: 336 HKADIQGFG--IQNENGCYFIPSDVALGSEAFTKWLADEDMRKYTFDAKRAIVALKW-KD 392

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           ++I        L+ A         K      K   ++    K     + KG         
Sbjct: 393 VEIKGID-FDLLIAAYLLDPADTDKDFRAVAK--MKETHAVKSDEEVYGKGAKRAVPEQG 449

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H           +       E  ++ E  +  E  L  +   +  +G  VD     
Sbjct: 450 VVAEHVARKVHVLFDVQKTFVEELEKNEQYELFTELEMPLARVLAEMEVKGVKVDTERLR 509

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
            +   +     +++Q++  L      +    ++L   LF    L +   T+   +T   V
Sbjct: 510 NMGDELAGRLKEMEQKIYELAGT-EFNINSPKQLGVVLFENLNLPVIKKTKTGYSTSADV 568

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L            + + R    +     +  L++ ++ D     T      ++TGR S  
Sbjct: 569 LDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSST 627

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADL 381
               QN+P       +                         +R   I S EG  +  AD 
Sbjct: 628 DPNLQNIPIRLEEGRK-------------------------IRQAFIPSTEGWVMYAADY 662

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +      
Sbjct: 663 SQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNF---- 718

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         G++    +                                      
Sbjct: 719 ----------GIVYGISDYGLSQ------------------------------NLGITRK 738

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
           A     + +      V E  +E+ Q  +Q                             + 
Sbjct: 739 AAGEFIEKYFASFPGVKEYMDEIVQEAKQ--------------------------KGYVS 772

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NA 617
               R     ++ +             R            +Q  + DI+ + M+      
Sbjct: 773 TLLNRRRYIPEITSRNF---NLRSFAERTAMNTP------IQGSAADIIKKAMIIMANRL 823

Query: 618 TKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 824 EEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 880


>gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 877

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 98/651 (15%), Positives = 207/651 (31%), Gaps = 128/651 (19%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
              +   A    D    +     +P     LK   E+  +  ++ +   E  +L    ++
Sbjct: 331 HSEIYSLAIKTKDTDTYII----EPEKISELKNIFEDKTINKISFDIKEEMVLLDK-LDI 385

Query: 87  DIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           D+ I  +   +++        +   LK + ++    + +++  + LI +  K + +  + 
Sbjct: 386 DL-IGPYDDLMLMHYLIDPSRSSYDLKLLSQSY--LTYELDSDESLIGKGAKTKKYAEVD 442

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
             +      +     E  +  V      ++ ++   + E+ L  +  ++   G+  D  +
Sbjct: 443 QDDLAKLLASQVNAIEDSRDKVFKNLAEYEMVDLYENIEKRLARVLASMEIIGFGTDRKI 502

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
              L   ++ +   +  E+  L      +    ++L   LF +  L +   T+   +T  
Sbjct: 503 LEGLKADLEKQIEAITSEIYDLAGS-EFNINSTKQLGEVLFKDLDLPVVKKTKTGFSTDA 561

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
           +VL   +   P   ++   R    +     +  L  A++ DGR+R T +   A  TGR S
Sbjct: 562 KVLEKLRDKHPIIEKIERYR-EIYKLRSTYIEGLENAIDEDGRIRSTFRQNIA-STGRLS 619

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QNLP  +                              +R    A EGK L+ AD
Sbjct: 620 SQEPNLQNLPIKTDEGRA-------------------------IRKAFKAGEGKILIDAD 654

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +A ++    AF  G D++  T +  F+    +VTK QR+  K +   + 
Sbjct: 655 YSQIELRILASLADDKNMQDAFNRGIDIHTQTASEVFHTPLDEVTKLQRSEAKAVNFGII 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y              GL+                                          
Sbjct: 715 YGIS---------DYGLS-----------------------------------QNLNIPR 730

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              +     +++ + ++ E  +++ Q                                 +
Sbjct: 731 PRAKEYIDKYKKSYPQIKEYMDDVVQLARS--------------------------QGYI 764

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                R     ++ +             R            +Q  + DI+   M++    
Sbjct: 765 ETLFKRRRYIPEISSRNF---NVRSFGERIA------LNTPIQGTAADIIKIAMIDTYNK 815

Query: 621 ------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLK 664
                    I+L +HDEI+ E+ + D+  A  +    M         L + 
Sbjct: 816 LKEEGLDAKIILQIHDEIIIESSEKDKEKARDILKKCMEGAAKLKVDLLVD 866


>gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
 gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884]
          Length = 834

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 99/608 (16%), Positives = 173/608 (28%), Gaps = 144/608 (23%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
           + TV      + +        L+LA      ++        +                  
Sbjct: 357 DLTVWARREGVRVQPG--EDPLLLAYLYDPTNS-DPAATVRRYG---------------- 397

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
                           E WR+ GE   G       ++         E+ L  +   +   
Sbjct: 398 AGDWSEDPAARALAAAELWRILGERLAG----EEALWWLYR---EVERPLAGVLAEMEHA 450

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VDVA    L+  +  E   ++ E+  L      +    ++L+  L+ E GL     T
Sbjct: 451 GVRVDVAYLEALSAELGREIAAIEAEVHRLAGRA-FNLNSRDQLEVILYDELGLTPTRRT 509

Query: 256 -----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
                 +T    L +     P   ++   R   S+     L+ L   ++       T   
Sbjct: 510 QKTGRRSTSAAALEALVGAHPIVERILAYR-ELSKLKGTYLDPLPRLVHPATGRIHTRYH 568

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P  +                              +R   +A
Sbjct: 569 QTGTATGRLSSSDPNLQNIPVRTEVGRR-------------------------IRRAFVA 603

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
             G  LV AD + IE RVLA ++G++   + F+   D++  T +  F V P  V   +R 
Sbjct: 604 EPGYVLVAADYSQIELRVLAHLSGDENLKRVFQERRDIHTQTASWMFGVPPEAVDPFRRR 663

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +                    G++ +  +                           
Sbjct: 664 AAKTVN--------------FGVLYGMSPHRLS--------------------------- 682

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
               E        ER  + + + + RV      + +  EQ  E G               
Sbjct: 683 ---RELGIEYAEAERFIQRYFESYPRVQAY---IERTLEQAREKGYVETL---------- 726

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                         GR     D+ +             R            VQ  + D++
Sbjct: 727 -------------FGRRRYIPDIRSRN---RNVREAAERMAFNMP------VQGTAADLM 764

Query: 611 AEGMMN----ATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
              M+         G  ++L VHDE+V E P       + +   +M     WA  +PL+ 
Sbjct: 765 KLAMVKLAPEIRSLGARLILQVHDELVLEAPQERAEAVARVVREVMEGA--WALDVPLEV 822

Query: 666 EGYESKRY 673
           E    + +
Sbjct: 823 EVGIGENW 830


>gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
 gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633]
          Length = 883

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 96/661 (14%), Positives = 195/661 (29%), Gaps = 140/661 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNLDIP 89
            A  F          +   V  +  K+ L +  +        F+     V    F L + 
Sbjct: 339 LAVAFGTEKQVYVTSIESAVQSEAFKQWLADETIEKT----MFDTKAMKVFANRFGLTVA 394

Query: 90  IHRWICTLVLARSNGLPSALK---AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
              +    +LA        +     V +   +S  K +E       + KG   +   ++ 
Sbjct: 395 GATY-DVSLLAYLVDANEIVNEIYDVAKRFGISLLKTDE-----EVYGKGVKIKVPEEKE 448

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALA 204
              +  A +++         + +++ +  +     E EL    +   +  +G  VD    
Sbjct: 449 VFWNHLAAKIYVL-ATAPKRLLKQLDENEQAQLYWEMELPLSDILARMEIQGIRVDQNRL 507

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             +    +    +++Q +  L      +    ++L   LF +  L +   T+   +T   
Sbjct: 508 IEMGLQFEERLKEIEQTIYELAG-EEFNINSPKQLGVILFEKMNLPVIKKTKTGYSTAVD 566

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL      +P    +   R   ++     +  L   ++  G++         ++TGR S 
Sbjct: 567 VLEKLASQSPIVECILEYRQ-LAKLNSTYVEGLQTYIDEKGKIHTRFVQN-LTQTGRLSS 624

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380
                QN+P  +                              VRS  + S    KL+ +D
Sbjct: 625 QDPNLQNIPIRTEEGR-------------------------QVRSAFLPSHPEWKLLSSD 659

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELAL 439
            + IE RVLA MA +   ++AF+   D++  T  R F +  P +VT   R   K +    
Sbjct: 660 YSQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMRVFGIQNPEEVTSSMRRQAKAVNF-- 717

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++    +                                    
Sbjct: 718 ------------GIVYGISDYGLSQ------------------------------NLNIP 735

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +     + ++   V +    +     Q                          N  
Sbjct: 736 RKKAKEFIDRYLEEFQGVKDYMETIVAEARQ--------------------------NDY 769

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +     R     ++ ++            R            +Q  + DIL   M+   +
Sbjct: 770 VETLFHRRRYLPEIHSSNF---NIRSFAERTAMNSP------IQGTAADILKVAMIELDR 820

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
                     ++L VHDE++ E P+ +  +   L   +M +  S    +PLKA+      
Sbjct: 821 ELTERNFQAKLLLQVHDELIFEVPEEEVESLQSLVEEVMENAVS--LSVPLKADSNIGNN 878

Query: 673 Y 673
           +
Sbjct: 879 W 879


>gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
 gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818]
          Length = 913

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 100/681 (14%), Positives = 198/681 (29%), Gaps = 163/681 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD------PVMPQVLKEALENT-DVTIVAHNSYFERT 78
           ++  ++ F+F FD          H        +  Q  K A+       ++ HN  F+ +
Sbjct: 359 QEAQLVGFSFCFDGKNAYYVPVGHRYLGVGNQLNLQEAKSAISRIFTHPLIGHNLKFDFS 418

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFCK- 135
           ++     L+  I +   +++L+       P  L                 K+++  F   
Sbjct: 419 LIYRTLGLE-HIGKIYDSMILSWLYDSIAPVGLD----------------KQMLKWFNHT 461

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE------------- 182
             + + +  + +   +       +Y   D   T +++ RLE    K              
Sbjct: 462 MISFDSVVPKGENFSQVNIITATQYAAEDAAATFKLYHRLEDEFHKREWGGILELAQNLE 521

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
                +   +   G  VD+ L   L         +L Q++  L      +    ++L   
Sbjct: 522 YPFIKVLMDMELEGIRVDIGLLEILKDKSSEHIAELSQKIYDLCG-ETFNLNSPQQLAHI 580

Query: 243 LFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA-- 297
           LF   GL          +T ++ L +     P    + + R  +++     +  L+    
Sbjct: 581 LFENLGLKPGRSVKGGLSTDEKTLLAIIDSHPVIDLILDYR-ESNKLKSTYIEPLLRLGR 639

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
            N   R+  +    G + TGR S      QN+P       +                   
Sbjct: 640 TNETHRIHTSFLQNG-TATGRLSSKSPNLQNIPVRREEGRK------------------- 679

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R   I+ EG  L+  D + IE R+LA    +   +++F   +D++  T AR F
Sbjct: 680 ------IRQAFISKEGHSLISIDYSQIELRLLAHFCKDPSLVESFMQDKDIHFETAARLF 733

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
                Q    +R I K +   L Y  G+                                
Sbjct: 734 G---EQEAMQKRFIAKSINFGLIYGMGS-------------------------------- 758

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                        + +          +   +++      + +  N   +   +       
Sbjct: 759 ------------KKLSQTLQIPLKQAKEYIESYFALFPTIKDFLNAQEEFLLE--NGYSQ 804

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
            +   RR               L                                   + 
Sbjct: 805 TLLGHRRYFDFKRATDFMKANFLR----------------------------------EG 830

Query: 598 TENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMT 652
             +I Q  + D++   M    K        ++L VHDE++ E P +  E  A  +  +M 
Sbjct: 831 INSIFQGSAADLIKLSMCEIHKRYAKSDLKMLLQVHDELIFEAPSERAENYAKEVADIMN 890

Query: 653 SNPSWAKGLPLKAEGYESKRY 673
           S   +   +PLK        +
Sbjct: 891 SI--YKLEVPLKCGIAIGTNW 909


>gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
 gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712]
          Length = 896

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 79/662 (11%), Positives = 191/662 (28%), Gaps = 138/662 (20%)

Query: 33  FAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
             F    H V   +  +D      +    +   EN +  +++ +   +   LK    + +
Sbjct: 348 LCFSTKLHEVSYINLPNDKNKALEIILQFQAIFENKNKILISADVKNDIIWLKRA-GIKL 406

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM-EEGKELIARFCKGETHECLYDRNK 147
             +      +         +      AL+  + K+    KE      + +      D + 
Sbjct: 407 K-NDIFDIKIAHYVLHPDISHDLGRVALEYLNYKLSGSKKEDQQLTLQFDEEAGTEDNDF 465

Query: 148 PNHREAWRLFGEYCKGDVTVT--REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               +      E    D+  T    ++      ++ E  L ++   +   G  +D     
Sbjct: 466 AEKTDVIFQLHEKLCDDLQQTGLLALY------NNIEMPLVFVLADMEYEGVSIDCNELQ 519

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQ 260
           +++  +      +++E+  L      +    ++L   LF +  +       +    +T +
Sbjct: 520 SISSELKERIDIIEKEIYEL-AHQEFNISSPKQLGEVLFDKLKIDSNHKKTKSGQYSTSE 578

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRW 319
           +VL   +   P   ++ + R    +        L   ++   G++        A+ TGR 
Sbjct: 579 QVLVKLEDEHPIINKILDYR-GLKKLLTTYAEALPSFIDPGTGKIHTHFNQAEAA-TGRL 636

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378
           S      QN+P  +    +                         +R   +   +      
Sbjct: 637 SSLNPNLQNIPIRTEEGRK-------------------------IRKAFVTGNDDYLFFS 671

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E R++A ++ ++  + AF  G D++  T ++ ++V   +VT + R   K     
Sbjct: 672 ADYSQVELRLMAHLSQDKELIHAFNHGIDVHTATASKIYHVTLEEVTPEMRRRAKTANF- 730

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++                                  A     
Sbjct: 731 -------------GIIYGIS------------------------------AWGLAERLHI 747

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                + +   +   +  V +   E  +   +                            
Sbjct: 748 SRKEGKELIDGYFDLYPGVKKYMEESVEKARK--------------------------KE 781

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM--- 615
            +    GR    RD+ +  + +        R            +Q  + DI+   M+   
Sbjct: 782 FVETIMGRRRYLRDINSRNAVVRGM---AERNAINAP------IQGSAADIIKMAMICIQ 832

Query: 616 -NATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
               + G    +++ VHDE+  +   ++++    L  + M         +PL        
Sbjct: 833 KRIQEEGLMSRMIIQVHDELNFKCHKSEQYLLKSLVTNCMEHVIK--LSVPLTVSTGFGN 890

Query: 672 RY 673
            +
Sbjct: 891 NW 892


>gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 870

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 85/660 (12%), Positives = 183/660 (27%), Gaps = 158/660 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIP 89
               F +  +         +  + L      L  T V      + F+     +   ++  
Sbjct: 346 VGLAFSEKEIYTI-VAEGELTMEDLFSLVGTLAKTTVV-----ALFDVKAALSYVRIE-D 398

Query: 90  IHRWICTLVLARSNGLPSA----LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
                   + A       +    L    E L L   +  EG                  R
Sbjct: 399 PESCFDVGIAAYLLNPLKSDYTWLDVAAEHLSLLIDEKTEGYC----------------R 442

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVAL 203
           +       W            +  ++ +       +  E+  L     +   G  V+   
Sbjct: 443 SCYEAYVIWAAA-------AVLEEKMKESGTEELFRTIEMPLLFTLFAMEQAGVRVEAEA 495

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
                + +  +  +L++E+ +       +    ++L   LF +  L     T+   +T  
Sbjct: 496 LRLYGEQLGTKIVELEKEIYAQAG-EAFNINSPKQLGVILFEKLRLPHGKKTKTGYSTAA 554

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL       P   ++   R   ++      + L   + +DGR+ G       + TGR S
Sbjct: 555 DVLDKLAPEYPVVEKILEYRQ-LTKLKSTYADGLANYICADGRIHGKFNQ-TITATGRIS 612

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QN+P                                 +R   I  EG   V AD
Sbjct: 613 STEPNLQNIPVRMELGR-------------------------LIRKVFIPEEGYVFVDAD 647

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA  +G+Q  + A+   +D++  T ++ F+    +VT+ QR   K +   + 
Sbjct: 648 YSQIELRILAHCSGDQELIHAYREAKDIHRITASQVFHTPFDEVTELQRRNAKAVNFGIV 707

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L+                                          
Sbjct: 708 YG-----ISSFGLSQDLS---------------------------------------ITR 723

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                    + + +  + +  ++     ++                             +
Sbjct: 724 KEASEYIDRYFETYPGIKKFLDDTVAHAKE--------------------------MGYV 757

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618
           +   GR     ++ ++     +      R            +Q  + D++   M+     
Sbjct: 758 VTLFGRRRPVPELASSNFMQRSF---GERVAMNAP------IQGTAADVMKIAMIGVHRE 808

Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
               K    +VL VHDE++ E  + +  +   +    M         +PL+ + +  + +
Sbjct: 809 LTERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAAQ--LDVPLEVDMHTGRNW 866


>gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5]
          Length = 958

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 92/694 (13%), Positives = 189/694 (27%), Gaps = 150/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM--PQVLKEA 60
               D ET                +  ++  +   +           +      ++++  
Sbjct: 388 EFCFDTETT----------GFDIFNDRIVGMSLAVNPFEAWYIPFKEENTAEYTEIVRPL 437

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKL 118
            EN  +  +  N  F+  VL     L+I   ++  T++L           + A+ E  K 
Sbjct: 438 FENDRIAKIGQNIKFDLMVL-RQLGLEIRGRKY-DTMILHYLLDPESRHNMNALAE--KY 493

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
            + K  E + LI              +             EY   D  VT  +   L P 
Sbjct: 494 LNYKPIEIETLI----------GKGSKQLTMDLVNVERVKEYAAEDADVTLRLKHALYPQ 543

Query: 179 SS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E+ +  +   I   G  +D       +  +     +L+  +      
Sbjct: 544 IEELGLQHLYFEIEEPMIAVLADIEMAGVRIDSEALAVYSVELSRRLAELEAAICEEAGE 603

Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +     +L   LF +  +     +T+T    T +  L S          +   R   
Sbjct: 604 SQLNINSARQLGEVLFGKMRIAEKPKMTKTKQFCTDEDYLQSFAHKHRIVDLILEYR-GV 662

Query: 284 SRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            +     +  L + +N   GR+  +      + TGR S      QN+P            
Sbjct: 663 KKLLSTYVEALPQLVNRRTGRIHTSFNQAV-TATGRLSSTNPNLQNIPVREEMGRR---- 717

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                +R   I   E   L+ AD + +E R++A ++G++  + A
Sbjct: 718 ---------------------IRRAFIPSDEEHLLLSADYSQVELRLMAHLSGDESLIAA 756

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  GED++  T A+ FN    +VT ++R   K     + Y   A        +  L +  
Sbjct: 757 FAHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISA-----FGLSQRLEIPR 811

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                  +     +   + +   +     E        G                     
Sbjct: 812 KEAKEIIDGYFASYPKVQEYMDNVVAKAKEEGFVSTIFGR----------------RRYL 855

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS-GRSLVYRDVGNNRSYL 580
           N++         N  A    +R  V         + + + + +  R      + +     
Sbjct: 856 NDI------ASHNAIARGLAERNAVNAPIQGSAADIMKIAMINVHRRFAAEGIRSKV--- 906

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                                            ++               E+V +   ++
Sbjct: 907 ---------------------------------ILQVHD-----------ELVVDMLRSE 922

Query: 641 EFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +    +++   M S    A  + L  +      +
Sbjct: 923 QERVVAIVTEAMESAA--ALKVRLVVDYGVGGNW 954


>gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87]
 gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87]
          Length = 887

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 95/657 (14%), Positives = 194/657 (29%), Gaps = 130/657 (19%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLKACFNLD 87
           ++ F F  DD  V +     D    Q L + LE+ +     +++   +   V     N+D
Sbjct: 344 ILKFGFYADDSHVVI--NAEDIKQYQDLVQWLEDKNTIKTVYDAKKTY---VAAHRLNID 398

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           I   +    ++ +       ++  V     +S       K+ ++ + KG+ H+   +   
Sbjct: 399 IQNVQ-FDVMLSSYIIDPSRSIDDVKSV--VSLYGQNYVKDNVSVYGKGKKHQVPEEEVL 455

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
             H  +        K ++    E + ++E L   E  L  +   + + G   DV     +
Sbjct: 456 NKHVASITEAIANSKPEMEAQLEEYNQVELLKDLELPLAKILSEMEEIGIYTDVEDLKQM 515

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
              +  +   L + +         +    ++L   LF    L +   T+   +T   VL 
Sbjct: 516 ENEIQEKLDVLIKNIHEAAG-EEFNINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLE 574

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             +   P    +   R   S+     +  L + ++ D R+        A +TGR S    
Sbjct: 575 QLQGEHPIIEHILEYRQ-LSKLQSTYVEGLQKVISKDQRIHTRFNQTLA-QTGRLSSVDP 632

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAG 383
             QN+P       +                         +R       +   ++ AD + 
Sbjct: 633 NLQNIPIRLEEGRK-------------------------IRKAFKPTDKDSVILSADYSQ 667

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA +  ++   +AF  G D++  T  + FNV   +V    R   K +        
Sbjct: 668 IELRVLAHITQDESLKEAFINGNDIHTATAMKVFNVEANEVDSLMRRQAKAVNF------ 721

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++    +                                        
Sbjct: 722 --------GIVYGISDYGLSQ------------------------------SLGITRKKA 743

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +     +      V +  +++    +     G                            
Sbjct: 744 KAFIDDYLASFPGVKQYMSDI---VKDAKAEGYVETLLH--------------------- 779

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
             R     D+ +             R            +Q  + DI+   M+   +    
Sbjct: 780 --RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKFYEKVKD 828

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E P ++  + S  +  +M         +PLK +      +
Sbjct: 829 TNYHATLLLQVHDELIFELPKSEVEDFSKFVEEIMEQALD--LDVPLKVDSSYGPTW 883


>gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua Clip11262]
 gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua Clip11262]
          Length = 875

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 78/664 (11%), Positives = 175/664 (26%), Gaps = 148/664 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
                       +          V +  +E+ +  +V     ++     V        I 
Sbjct: 333 IGLTVHSSQGTYFFTKETAEKSAVFRNWVESDETKVV-----YDAKKTMVAMNRIGFAIK 387

Query: 90  IHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                  ++ +       ++     V      +  + +E             +     R+
Sbjct: 388 -GVTFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDE-----------AIYGKGAKRS 435

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVD 200
            P                  + + +   LE       +   E  L ++   +  +G  VD
Sbjct: 436 TPEENIVAAHLARKAVAIAELEKRLVDDLEENEQLALMEDLELPLTFVLAQMEMQGVSVD 495

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +   +      L++ + SL      +    ++L   LF +  L     T+   +
Sbjct: 496 TKRLENMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLELPPVKKTKTGYS 554

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL S         ++   R    +     +  L++  + +     T      ++TG
Sbjct: 555 TAADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTG 613

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376
           R S      QN+P       +                         +R   +    G K+
Sbjct: 614 RLSSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKM 648

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K + 
Sbjct: 649 FSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN 708

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    +                                 
Sbjct: 709 --------------FGIVYGISDYGLSQ------------------------------NL 724

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +     +   +  V E   ++ +  ++  +     I                 
Sbjct: 725 GITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH--------------- 767

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    R     ++ +             R            +Q  + DI+ + M+ 
Sbjct: 768 ---------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMIL 809

Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P+ +      +   +M +       +PLK +   
Sbjct: 810 MSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAF 867

Query: 670 SKRY 673
              +
Sbjct: 868 GDTW 871


>gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1]
 gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315]
 gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9]
 gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1]
 gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781]
 gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763]
 gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719]
 gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299]
 gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115]
 gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300]
 gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224]
 gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937]
 gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98]
 gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117]
 gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981]
 gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819]
 gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796]
 gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21172]
          Length = 876

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + + A    +            F        +     D      L  
Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|313618759|gb|EFR90664.1| DNA polymerase I [Listeria innocua FSL S4-378]
          Length = 552

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 77/640 (12%), Positives = 173/640 (27%), Gaps = 148/640 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKA-- 111
            +  +E+ +  +V     ++     V        I        ++ +       ++    
Sbjct: 34  FRNWVESDETKVV-----YDAKKTMVAMNRIGFAIK-GVTFDIMLASYLLNPSDSIDDFT 87

Query: 112 -VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            V      +  + +E             +     R+ P                  + + 
Sbjct: 88  SVAVRHDYTEVETDE-----------AIYGKGAKRSTPEENIVAAHLARKAVAIAELEKR 136

Query: 171 IFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +   LE       +   E  L ++   +  +G  VD      +   +      L++ + S
Sbjct: 137 LVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHS 196

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
           L      +    ++L   LF +  L     T+   +T   VL S         ++   R 
Sbjct: 197 LAG-EEFNINSPKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQ 255

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     +  L++  + +     T      ++TGR S      QN+P       +   
Sbjct: 256 -LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRK--- 311

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +R   +    G K+  AD + +E RVLA ++ ++  + 
Sbjct: 312 ----------------------IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIY 349

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+   D++  T    F+V   +V    R   K +                    G++  
Sbjct: 350 AFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN--------------FGIVYGISDY 395

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +                                        +     +   +  V E 
Sbjct: 396 GLSQ------------------------------NLGITRKEAKDFIDRYFVSYPAVKEY 425

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             ++ +  ++  +     I                          R     ++ +     
Sbjct: 426 MQDIVRFAKE--KGYVETILH------------------------RRRYIPEIVSRNF-- 457

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
                   R            +Q  + DI+ + M+              ++L VHDE++ 
Sbjct: 458 -NVRGFAERTAMNTP------IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIF 510

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           E P+ +      +   +M +       +PLK +      +
Sbjct: 511 EAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 548


>gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102]
 gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102]
          Length = 876

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + + A    +            F        +     D      L  
Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826]
          Length = 878

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 96/700 (13%), Positives = 192/700 (27%), Gaps = 169/700 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQVL 57
            +  D ET               +   ++ F+F F+D         H        +    
Sbjct: 317 IVAFDTETTGVDS----------KSAKIVGFSFSFNDEDAYYVPVAHNYLGAPKQIDLKF 366

Query: 58  KEALENTDVTI---VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAV 112
                   +     +  N  ++  ++K    L+ P   +  T++LA  +   S+  + A+
Sbjct: 367 ATW-AVGQIYKGCVIGQNLKYDFEIVKNNLGLN-PPANFKDTMILAWLSDPNSSVGMDAL 424

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            + L                       E +  + +           +Y   D  +T + +
Sbjct: 425 AKRL---------------YDYDTIKFEDVVKKGQTFGDVPLENAAKYAAEDAWITLKFY 469

Query: 173 KRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           K  +                        +   G  ++ A    L    D +   L  E+ 
Sbjct: 470 KTFQNTLDPNLLALADMHEFPFILTLFDMEQNGIKINEAKMQKLILENDTKLKALTSEIY 529

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRVLSSNKKLTPQAIQVFNNR 280
            L+     +   +++L   LF    L  +       +T + VL+      P   ++   R
Sbjct: 530 ELSG-ENFNINSVKQLGVILFEHLKLPTKKKTKTGYSTDESVLAELIDAHPVVGKILAYR 588

Query: 281 MRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
               +        L+     D   R+  +    G + TGR S      QN+P        
Sbjct: 589 -ELYKLQSTYCEPLLALAKKDEGSRIYTSFLQTG-TSTGRLSSKNPNLQNIPARG----- 641

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                ++  VR C  A EG   V  D + IE R+LA  + +   
Sbjct: 642 --------------------SLAKDVRECFEAREGYSFVGLDYSQIELRLLAHFSRDPAL 681

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF+  ED++  T    F  +        RA+ K +   L Y              G+ 
Sbjct: 682 LEAFKNDEDIHARTAISIFGSS----DGQNRAVAKSINFGLIY--------------GMG 723

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            +  A+ V                                     +   + + +  + + 
Sbjct: 724 SSKLANQVNI------------------------------TRAEAKEYIERYFKAFATIK 753

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E    +  + +                              +    GR   + D  +   
Sbjct: 754 EFLESIKISAKN--------------------------EGFVQTLLGRKRYF-DFKSATP 786

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---KAGYDIVLTVHDEIVCE 635
                         +  +    + Q  + D++   M+           ++L +HDE++ E
Sbjct: 787 MQ---------MAMFEREAVNTVFQGSAADLVKMAMVKVRANLDKNASMLLQIHDELIFE 837

Query: 636 TPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674
             D             M     +   +PLK     +K + 
Sbjct: 838 VKDEFAQEFGRATQKTMEEI--YTLNVPLKTSLNIAKNWG 875


>gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 778

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 193/660 (29%), Gaps = 142/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A         +++   D       K+  E+ ++  V+ +   +  VL     ++I    
Sbjct: 236 IAIKSPSSKTFIYN--PDQKFVDNFKKYFEDENINKVSFDIKEDI-VLFNKLGIEINF-P 291

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           +   +++        +   +         K      L       E         K     
Sbjct: 292 YDDIMLMHYLIDPSRSSYDL---------KTFSQAFLKYEVLNEEDLLGKGRNKKSYKDL 342

Query: 153 AWRLFGEY------CKGDVT--VTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVA 202
           + +  G+Y         D    +T ++ +    E     E +L  +   +   G+  D  
Sbjct: 343 SEKELGKYLSSIINAIEDSLDILTDKLKELSMYELYKDCEIKLSKVLADMEITGFVCDKN 402

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   V VE   L++ +  L      +    ++L   LF +  L +   T+   +T 
Sbjct: 403 ELEKIKDEVSVELEGLEKIIYELAGS-EFNINSPKQLSIILFEDLELPIIKKTKTGYSTD 461

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            +VL   +   P   ++   R    +     L +L E ++ DGR+R T +    + TGR 
Sbjct: 462 AKVLEKLRDKHPIIGKIERYR-EMYKLKSTYLESLEECIDGDGRIRSTFKQNV-TATGRL 519

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QNLP  +    +                         +R    A   K L+ A
Sbjct: 520 SSTEPNLQNLPIRTEEGRK-------------------------IRKAFKADNEKILIDA 554

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA +A ++   +AF    D++  T +  FN    +VTK QR+  K +   +
Sbjct: 555 DYSQIELRVLAHLANDKKMQEAFSHDIDIHTKTASEVFNTPIDEVTKLQRSEAKAVNFGI 614

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y              GL+                                         
Sbjct: 615 IYGIS---------DYGLS-----------------------------------QNLNIP 630

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +   + +   + ++ +   ++ +  ++                             
Sbjct: 631 RKRAKEYIENYLNTYPQIKKYMKDIVKKAKE--------------------------EGF 664

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM---- 615
           +     R     ++ +             R            +Q  + DI+   M+    
Sbjct: 665 VNTIFNRRRYVPEINSKNF---NVRSFGERVA------LNTPIQGSAADIIKFAMINSYE 715

Query: 616 --NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKR 672
                K    IVL +HDEI+ E    D   A  +    M         +PL  +      
Sbjct: 716 NLKKAKVDAKIVLQIHDEIIIEASKKDLQKAKEILKSSMEEAV--NLKVPLLVDIDSGDS 773


>gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum]
          Length = 917

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 100/691 (14%), Positives = 191/691 (27%), Gaps = 132/691 (19%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMPQVLK 58
           D ET     L       +     ++  A              H           + Q L 
Sbjct: 323 DLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDIEQVLQRLA 382

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG-EAL 116
             L + +    AH+  ++  VL+         H    T++ A   G  +  LK +    L
Sbjct: 383 PFLRHPEKQRYAHHGKYDALVLERAG--FPRPHIDFDTMIAAYLLGENAVGLKELAFTKL 440

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
               +++ E                   +     R       +Y   DV  T  + + L 
Sbjct: 441 GWEMEEITEL-------------IGRGKKQLTMDRAEIARVTQYACADVEATYRLVEVLR 487

Query: 177 PLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           P                 L  +   +   G  +DV     L+ ++D +   L++ +  L 
Sbjct: 488 PQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELA 547

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
              + +    ++L T LF E GL     T+   +  Q VL + +   P    +   R   
Sbjct: 548 GHPL-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLL 606

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     ++ L   ++       T+     + TGR S      QN+P        + +  
Sbjct: 607 -KLKSTYVDALPRQVHPQTGRVHTIFHQTVAATGRLSSSDPNLQNIPARGELGLAVRRAF 665

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                                    IA E   L+  D + IE R++A  + +   L+AF 
Sbjct: 666 IADNRPGYR----------------IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFA 709

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G+D++  T +  F V    VT + R I KV+   + Y       Q         ++   
Sbjct: 710 EGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGM-----QAYGLARDTGMSRQD 764

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                 +  + +     +    +    E    +   G    R        +    +    
Sbjct: 765 AQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGR--RRYLPEITSSNPARRQ---A 819

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +        G A    K   + +                 R L  R + +        
Sbjct: 820 AERMAVNMPLQGTAADIMKLAMIAVH----------------RPLAERGLRS-------- 855

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
                                         ++        +VL        E P+++   
Sbjct: 856 ----------------------------RMLLQVHDE---LVL--------EVPESELAT 876

Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            + L    M+        +PL+ +      +
Sbjct: 877 TTELVTTRMSRVVE--LSVPLEVDAKAGPNW 905


>gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580]
 gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580]
          Length = 951

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 113/693 (16%), Positives = 207/693 (29%), Gaps = 161/693 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-------- 56
             D ET     L             ++ F+                              
Sbjct: 376 AFDCETTGLNPLYDS----------LVGFSLSLKAGTGIYVPLKAPAPELGEQPFAVMPL 425

Query: 57  ------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPS 107
                 L     N ++T+V HN  F+  VL+          R   T++ A       L  
Sbjct: 426 AAAKKLLARLWNNKELTLVLHNGKFDYQVLRTAGVFTRAGCRLFDTMIAAWLLEPDNLSF 485

Query: 108 ALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            L+ + EA L L      + K+++ + C                  +      Y   D  
Sbjct: 486 GLENLTEAQLGLQGL---DYKDVVPKGC-------------TFAAVSLPQATAYAAEDAD 529

Query: 167 VTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            T +++   +P   +          E  L  L   +  +G  +        ++ +     
Sbjct: 530 FTLQLYHVYKPALEQANLTTLFETLEMPLMPLLADMEAQGIFLKKEELAAFSEELAGTLA 589

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQA 273
           + + E+  L      +    ++L+  LF E  L     T+   +T   VL     +    
Sbjct: 590 RDEAEIYKLVGHP-FNIASPKQLQEVLFTERKLPTGKKTKTGYSTDISVLEELAAIDELP 648

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            ++ + R  +++      + L    +++GR+  +    G + TGR S      QN+P   
Sbjct: 649 AKILDYR-ASAKLKSGYADALPLLADANGRIHTSFIQTG-TATGRLSSRDPNLQNIPIRG 706

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
               +                         +R    A++G KL+ AD A IE  +LA  +
Sbjct: 707 EEGRK-------------------------IRKAFYAADGCKLISADYAQIELVILAHFS 741

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  +KAF  G D++  T A  FNV    V  D R I KV+   + Y   A        
Sbjct: 742 QDENLVKAFRQGTDVHAATAALIFNVPVENVVPDMRRIAKVINFGVMYGMSAFRLAN--- 798

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L ++              +     F   ++E+  E    +  +G    R  +A   +
Sbjct: 799 --QLRISRTEAADFITRYFTTYSGVAAFMETLKESAAEKGFVETLMGR--RRYIRAINSR 854

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +        +  +A  + I     I       V                           
Sbjct: 855 N--------QTQRAAAERIAINTPIQGSAADIVK-------------------------- 880

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
               + +    R L R             Q +S  +L    +              DE++
Sbjct: 881 ----TAMLHVDRALKR-------------QHLSAHLL----LQVH-----------DELI 908

Query: 634 CETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKA 665
            E PD++  +   +L   M      A  +PL+ 
Sbjct: 909 LEAPDSEVDSVKALLKQEMEHVVKLA--VPLRV 939


>gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255]
          Length = 882

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 99/664 (14%), Positives = 186/664 (28%), Gaps = 142/664 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +I      D   +   D          L     N ++    +N   +   LK   N+++ 
Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLKPY-NINLE 391

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            + +    +        S+      A           K L  +    E       ++K  
Sbjct: 392 -NMYFDITIAEYLIDSTSSTSYDCSA--------IAMKYLSKKVKSKEELLGKGVKSKNY 442

Query: 150 HREAWRLFGEYCKGDV--------TVTREIFKRLEPLSSKE--QELWYLDQTINDRGYCV 199
               +    EY    +         + R +               L  +   +   G  V
Sbjct: 443 EDLEFEDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKV 502

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256
           D ++   L+         L++E+  L+     +    ++L   LF +  L +   T+   
Sbjct: 503 DKSILDELSVEFKEIIATLEKEIYELSG-EPFNINSPKQLGVILFEKLELPIIKKTKTGY 561

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL   +   P   ++   R    +     +  L+  +N +     +      + T
Sbjct: 562 STNADVLEKLRDKHPIIDKITEYRQIV-KLNSTYVEGLLNIINPESNRIHSSFNQTITTT 620

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P       +                         +R   IA +  KL
Sbjct: 621 GRISSTEPNLQNIPIKMEMGRK-------------------------IRKVFIADDNCKL 655

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + +E RVLA M+ ++  ++AF+  ED++  T ++ FNV    VT + R   K + 
Sbjct: 656 VDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVN 715

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y               LN+          S   ++   + F     E   E     
Sbjct: 716 FGIIYGKS-----DFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYA- 769

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                                                     I  +RR +P +       
Sbjct: 770 ----------------------------------------VTILNRRRYIPEIKSSNFME 789

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                               R  +N                    +Q  + DI+   M+N
Sbjct: 790 RNR---------------GKRFAMNA------------------PIQGSAADIIKIAMIN 816

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
             K          ++L VHDE++ E  D +      +    M +       + L  +   
Sbjct: 817 VHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAV--NMDVHLDVDLNV 874

Query: 670 SKRY 673
              +
Sbjct: 875 GSSW 878


>gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10]
 gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10]
          Length = 878

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 92/659 (13%), Positives = 194/659 (29%), Gaps = 137/659 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-CFNLDIPIH 91
                 +     +    + +   V K+  E+    I   ++   RTV+      +D+  +
Sbjct: 335 IGVAIANETGIYYVEAEEALTSDVFKKWAEDDQKEIYTFDAK--RTVVALGWAGIDLS-N 391

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                 + +      S    + +            K  I        +     +  P   
Sbjct: 392 TTFDIQMASYLIDPASGSHEIADIAN--------RKNGIQVQTDEAVYGKGKKQAIPEAE 443

Query: 152 EAWRLFGEYCKGDVTV----TREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAH 205
           E  +  G      + +     +E+    +    ++ E+    +   +   G  VD     
Sbjct: 444 ELSQHLGRKAAAILDLKKNLEQELRDNRQWELFQDLEMPLSVILGRMEANGVSVDQQELE 503

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
           T+ + +     KL+Q++         +    ++L   LF + GL +   T+   +T   V
Sbjct: 504 TIGKDLTERLAKLEQQIYEAAGQS-FNINSPKQLGKVLFEDLGLPVLKKTKTGYSTSADV 562

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L   K        +   R    +     +  L++ ++       T+     ++TGR S  
Sbjct: 563 LEKLKGEHDVIDHILFYRQ-LGKLNSTYIEGLLKVIHPKTGKIHTIFNQAVTQTGRLSST 621

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADL 381
               QN+P       +                         +R   +    G KL  AD 
Sbjct: 622 EPNLQNIPVRLEEGRK-------------------------IRRAFVPSKPGSKLFAADY 656

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA ++ ++  + AF+ G D++  T +  F V   +VT + R   K +   + Y
Sbjct: 657 SQIELRVLAHISKDENLISAFQEGMDIHTKTASDVFGVKGNEVTAEMRRTAKAVNFGIVY 716

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                       +  L ++        +   E +   + +   +     E          
Sbjct: 717 GIS-----DYGLSQNLGISRKKAQTFIDKYFESYPGVKTYMEDIVAEAREQGYV------ 765

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                                                + ++RR +P +  +         
Sbjct: 766 -----------------------------------TTMLQRRRYLPDLTSRNFNQRSF-- 788

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---- 617
                          R+ +NT                   +Q  + DI+ + M++     
Sbjct: 789 -------------AERTAMNT------------------PIQGSAADIIKKAMVDMATEL 817

Query: 618 --TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                   ++L VHDE++ E P+ +      L   +M S       +PL  +      +
Sbjct: 818 ERQNLKSVMLLQVHDELIFEVPEDEIETMEKLVKDVMESTIE--LNVPLITDMATGDTW 874


>gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
 gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 94/664 (14%), Positives = 183/664 (27%), Gaps = 145/664 (21%)

Query: 31  ILFAFGFDDHPVEL-WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +      +D  + + WD   +    + L E L +        +   +   L    +  I 
Sbjct: 339 LGIGLATEDTVMFVPWDVAKE---WKALCEWLADPAKEKWVFDGKRDTVGLAWH-DFAIK 394

Query: 90  IHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                   + +       +   L ++                        E +     R 
Sbjct: 395 GIS-FDVYLASYLLNAAESNPTLDSIAAQY-----------AQTRVLSDEEVYGKGAKRL 442

Query: 147 KPNHREAWRLFGEYCK---GDVTVTRE-IFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            P                   V V RE + +        E E     +   +  +G  V+
Sbjct: 443 VPEMDVLSEHVAHKAAAIWQSVPVLREQLAENEMEKLLGELEAPLSMVLALMEKQGVKVN 502

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 + + +D +   L  ++  L  G   +    ++L   LF    L +   T+   +
Sbjct: 503 SERLVQMGEDLDKKLAGLTDQIYELAGGA-FNINSPKQLGEILFDRLSLPVLKKTKTGPS 561

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL       P    +   R    +     +  L + +++      TL     + TG
Sbjct: 562 TSADVLEKLAPYHPIIDAILTFRQ-LGKLRSTYIEGLTKEIHTKTSKVHTLYNQATTATG 620

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376
           R S      QN+P       +                         +R   I   +G  +
Sbjct: 621 RLSSTDPNLQNIPIRMEEGRK-------------------------IREAFIPSEDGWYM 655

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R+LA ++ ++  + AF+ G D++  T    F V+  +VT   R   K + 
Sbjct: 656 LAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDVFGVSEEEVTSLMRRQAKAVN 715

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    +                                 
Sbjct: 716 F--------------GIVYGISDYGLSQ------------------------------NL 731

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                      + +    S V    +E+ Q  +    +G                     
Sbjct: 732 NITRKEAGDFIERYFDVFSGVKRWMDEIVQQAK---ADGHVTTLLN-------------- 774

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    R     D+ ++            R            +Q  + D++   M+ 
Sbjct: 775 ---------RRRYLPDIRSSNF---NLRSFAERTAMNTP------IQGTAADVIKLAMIR 816

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
             +A         ++L VHDE+V E PD +      L   +M S  S    +PLK +  +
Sbjct: 817 MQEALEEKGLASRMLLQVHDELVFEVPDNELEVMRKLVPEVMESALS--LDVPLKVDVSD 874

Query: 670 SKRY 673
            + +
Sbjct: 875 GRTW 878


>gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26]
 gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932]
 gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55]
 gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79]
 gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291]
 gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58]
 gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196]
 gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291]
          Length = 882

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 99/664 (14%), Positives = 186/664 (28%), Gaps = 142/664 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +I      D   +   D          L     N ++    +N   +   LK   N+++ 
Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLKPY-NINLE 391

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            + +    +        S+      A           K L  +    E       ++K  
Sbjct: 392 -NMYFDITIAEYLIDSTSSTSYDCSA--------IAMKYLSKKVKSKEELLGKGVKSKNY 442

Query: 150 HREAWRLFGEYCKGDV--------TVTREIFKRLEPLSSKE--QELWYLDQTINDRGYCV 199
               +    EY    +         + R +               L  +   +   G  V
Sbjct: 443 EDLEFEDLAEYMGQIICTVKETIPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKV 502

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256
           D ++   L+         L++E+  L+     +    ++L   LF +  L +   T+   
Sbjct: 503 DKSILDELSVEFKEIIATLEKEIYELSG-EPFNINSPKQLGVILFEKLELPIIKKTKTGY 561

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL   +   P   ++   R    +     +  L+  +N +     +      + T
Sbjct: 562 STNADVLEKLRDKHPIIDKITEYRQIV-KLNSTYVEGLLNIINPESNRIHSSFNQTITTT 620

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P       +                         +R   IA +  KL
Sbjct: 621 GRISSTEPNLQNIPIKMEMGRK-------------------------IRKVFIADDNCKL 655

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + +E RVLA M+ ++  ++AF+  ED++  T ++ FNV    VT + R   K + 
Sbjct: 656 VDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVN 715

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y               LN+          S   ++   + F     E   E     
Sbjct: 716 FGIIYGKS-----DFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYA- 769

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                                                     I  +RR +P +       
Sbjct: 770 ----------------------------------------VTILNRRRYIPEIKSSNFME 789

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                               R  +N                    +Q  + DI+   M+N
Sbjct: 790 RNR---------------GKRFAMNA------------------PIQGSAADIIKIAMIN 816

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
             K          ++L VHDE++ E  D +      +    M +       + L  +   
Sbjct: 817 VHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAV--NMDVHLDVDLNV 874

Query: 670 SKRY 673
              +
Sbjct: 875 GSSW 878


>gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
 gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1]
          Length = 974

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 94/661 (14%), Positives = 184/661 (27%), Gaps = 145/661 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACF-- 84
             +   A                  +    ++  L + D   VA    F+   +      
Sbjct: 440 AEIRGMAVAA-PKRAYYV--RFGERLELSDVRPWLVS-DRPKVA----FDLKSMAFALDA 491

Query: 85  -NLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             + +     W    + A            GE         E G+EL          + +
Sbjct: 492 HGIGLTSECGWQDVKLAAYLLNP-----QDGEVELSDVFARELGQEL------PTFDDGV 540

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            ++             E        T  + +        E  L ++   +   G+ V+  
Sbjct: 541 REKWLAYTASQLPPLFESLA----YTIRMQEMERLYQEVELPLAFVLAKMEITGFYVNRE 596

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
                 Q +    T++ QE+  L      +    ++L   LF + GL     T+   +T 
Sbjct: 597 KLVAFGQELTERITRITQEIYDLAGTS-FNLNSPKQLGEILFDKLGLPALKKTKTGYSTS 655

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL     +     ++ + R+  ++     +  L++ +  +     T      + TGR 
Sbjct: 656 ADVLEKLAPMHEIVQKILDYRL-LAKLQSTYVEGLLKVIRKETGRVHTRFHQTLTATGRL 714

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P        L ++                             +   +  A
Sbjct: 715 SSSEPNLQNIPIRLEEGRRLRRVFEPTY------------------------KDWVIFAA 750

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA ++G++  + AF    D++  T A  F V P QVT   R   K +    
Sbjct: 751 DYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNF-- 808

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++    A                                    
Sbjct: 809 ------------GIVYGISDFGLAQ------------------------------NLNIP 826

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +R  +++ +K   V    +E+    +Q  E G                        
Sbjct: 827 QKEAKRFIESYFEKFPGVKRYMDEI---VKQARERGYVTTLMN----------------- 866

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                 R     D+ +             R            +Q  + D++   M+   +
Sbjct: 867 ------RRRYLPDIHSRN---YQLRSFAERTAMNTP------IQGSAADLIKLAMVRIDR 911

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672
           A         ++L VHDE++ E P+ +     +L    M +  +    +PLK +      
Sbjct: 912 AMRDAQMDARMLLQVHDELIFECPNDELAALEVLVRDNMENAMT--LSVPLKVDTAYGPT 969

Query: 673 Y 673
           +
Sbjct: 970 W 970


>gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630]
 gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42]
 gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile]
          Length = 882

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 99/664 (14%), Positives = 186/664 (28%), Gaps = 142/664 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +I      D   +   D          L     N ++    +N   +   LK   N+++ 
Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLKPY-NINLE 391

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            + +    +        S+      A           K L  +    E       ++K  
Sbjct: 392 -NMYFDITIAEYLIDSTSSTSYDCSA--------IAMKYLSKKVKSKEELLGKGVKSKNY 442

Query: 150 HREAWRLFGEYCKGDV--------TVTREIFKRLEPLSSKE--QELWYLDQTINDRGYCV 199
               +    EY    +         + R +               L  +   +   G  V
Sbjct: 443 EDLEFEDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKV 502

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256
           D ++   L+         L++E+  L+     +    ++L   LF +  L +   T+   
Sbjct: 503 DKSILDELSVEFKEIIATLEKEIYELSG-EPFNINSPKQLGVILFEKLELPIIKKTKTGY 561

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL   +   P   ++   R    +     +  L+  +N +     +      + T
Sbjct: 562 STNADVLEKLRDKHPIIDKITEYRQIV-KLNSTYVEGLLNIINPESNRIHSSFNQTITTT 620

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P       +                         +R   IA +  KL
Sbjct: 621 GRISSTEPNLQNIPIKMEMGRK-------------------------IRKVFIADDNCKL 655

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + +E RVLA M+ ++  ++AF+  ED++  T ++ FNV    VT + R   K + 
Sbjct: 656 VDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVN 715

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y               LN+          S   ++   + F     E   E     
Sbjct: 716 FGIIYGKS-----DFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYA- 769

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                                                     I  +RR +P +       
Sbjct: 770 ----------------------------------------VTILNRRRYIPEIKSSNFME 789

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                               R  +N                    +Q  + DI+   M+N
Sbjct: 790 RNR---------------GKRFAMNA------------------PIQGSAADIIKIAMIN 816

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
             K          ++L VHDE++ E  D +      +    M +       + L  +   
Sbjct: 817 VHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAV--NMDVHLDVDLNV 874

Query: 670 SKRY 673
              +
Sbjct: 875 GSSW 878


>gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
 gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
          Length = 876

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 97/663 (14%), Positives = 194/663 (29%), Gaps = 131/663 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81
           Y +D  ++ F F  +   V +     D    + L   LE+ + T + +++   +   V  
Sbjct: 328 YLKDA-ILKFGFYTNHQHVVI--NADDVKNYKNLVRWLEDKNTTKIVYDAKKTY---VSA 381

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               ++I        ++ +       ++  V   + L  Q     K+ I  F KG+ H  
Sbjct: 382 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSVVGLYGQNYV--KDNITVFGKGKKHHI 438

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
             +     H  +           +    E + ++E L   E  L  +   + + G   D+
Sbjct: 439 PEESILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDI 498

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                +   +  +   L   +   + G   +    ++L   LF    L +   T+   +T
Sbjct: 499 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 557

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    +   R   S+     +  L + ++ D R+        A +TGR
Sbjct: 558 AVDVLEKLQGEHPIIDDILEYRQ-LSKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377
            S      QN+P       +                         +R      S+   ++
Sbjct: 616 LSSVDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 650

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +  ++    AF  G D++  T  + FNV   QV    R   K +  
Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++    +                                  
Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLG 726

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +     +      V +  +++    +     G                      
Sbjct: 727 ITRKKAKAFIDDYLASFPGVKQYMSDI---VKDAKAQGYVETLLH--------------- 768

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   R     D+ +             R            +Q  + DI+   M+  
Sbjct: 769 --------RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKF 811

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670
           ++          ++L VHDE++ E P ++  + S  +  +M         +PLK +    
Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869

Query: 671 KRY 673
             +
Sbjct: 870 ATW 872


>gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 561

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 94/680 (13%), Positives = 197/680 (28%), Gaps = 146/680 (21%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D           +  +   AF F +  V   D        + LKE  E  +     H   
Sbjct: 3   DSRNIAFYPLIYEGEIKKIAFSFGEDTV-YIDVFQ----IEDLKEIFEKEEFEFTTHEIK 57

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
            +  V  +   ++    ++I T ++A       +   +   LK         K L     
Sbjct: 58  -DFLVKLSYKGIECK-SKYIDTAIMAYLLNPSESNYDLDRVLK---------KYLKVDVP 106

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----------SSKEQE 184
             E         K        +  +Y         ++ ++L                E  
Sbjct: 107 SYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEEMDMKKLLLEIEMP 166

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L  + + +   G+ +D  +   L+Q +D    ++  ++         +    ++L  +LF
Sbjct: 167 LVEVLKLMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQ-FNVNSPKQLSEFLF 225

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +  L +   T+   +T   VL            +   R   ++     ++  +  M+ +
Sbjct: 226 EKLNLPVIKKTKTGYSTDSEVLEQLVPYNDVVSDIIEYRQ-LTKLKSTYIDGFLPLMDEN 284

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            R+    + +  + TGR S      QN+P                               
Sbjct: 285 NRVHSNFKQMV-TATGRISSTEPNLQNIPIREEFGR------------------------ 319

Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   I   +   +V AD + IE RVLA ++G++  +++F   ED+++ T A  F V 
Sbjct: 320 -QIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVP 378

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +VT + R   K +                    G++    +                 
Sbjct: 379 MEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS----------------- 407

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                         +        +     + +++  V E   ++ +  ++          
Sbjct: 408 -------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKE---------- 444

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                           N  +     R     ++ +      T   Q  R           
Sbjct: 445 ----------------NGYVTTIMNRRRYIPEINSRNF---TQRSQAERLAMNAP----- 480

Query: 601 IVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTS 653
            +Q  + DI+   M+   +          ++L VHDE+V +T   +      +    M +
Sbjct: 481 -IQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVEIVKKILKENMEN 539

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                  +PL  E      +
Sbjct: 540 VIK--LKVPLVVEIGIGPNW 557


>gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11]
 gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46]
          Length = 876

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + + A    +            F        +     D      L  
Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
 gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130]
          Length = 876

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + + A    +            F        +     D      L  
Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNSKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 876

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 99/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + + A    +            F        +     D      L  
Sbjct: 302 IET-SFDNVDFTSLEEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +         + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVAFITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +      V  +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKVFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 884

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/671 (13%), Positives = 178/671 (26%), Gaps = 147/671 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERT----VL 80
               +      +D +            +  + +++ L + D         F++      L
Sbjct: 334 HHSDIAGLGL-YDGNKGYFLAFETLQSVNAEPIRQWLSDADKEKWI----FDKHRAQLAL 388

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                + +        L+ +       +   +             GK  +A     E   
Sbjct: 389 SW-KGIKLRGVS-FDVLLASYLLDPTESTLTLSGV---------AGKYSVASLPADEQVF 437

Query: 141 CLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTIN 193
               +   P             +    +   +  +LE           E  L  +   + 
Sbjct: 438 GKGAKFKLPEEHLLGENLSLKAERVSRLVPVLKAKLEESGMQELYYELEHPLAGVLAEME 497

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  VD      L   +  +   +   +         +    ++L   LF +  L ++ 
Sbjct: 498 LAGIKVDKESLKQLGTEISDQLKTIMDRIYEQAGMT-FNINSPKQLGEVLFEKLQLPVQK 556

Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+   +T   VL            + + R   ++     +  L++ +  D     T   
Sbjct: 557 KTKTGYSTDAEVLEKLAPYHDIVGDILHYR-TLAKLQSTYVEGLLKEVRPDTGKVHTYYR 615

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P       +                         +R   + 
Sbjct: 616 QTIAATGRLSSQYPNLQNIPIRLEEGRK-------------------------IRKVFVP 650

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
              G  ++ AD + IE RVLA ++G++   +AF    D++  T    F V+ A+V  + R
Sbjct: 651 SKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGVSEAEVDANMR 710

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y            +  L +               +    N+   +    
Sbjct: 711 RSAKAVNFGIVYGIS-----DYGLSQNLGITRKEASRFIEQYFSVFRGVRNYMDSIIREA 765

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                                                              ++RR +P +
Sbjct: 766 KTQGYVTTL-----------------------------------------LQRRRYLPEI 784

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                                      R+ +NT                   +Q  + DI
Sbjct: 785 NASNYNLRSF---------------AERTAMNTP------------------IQGTAADI 811

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           +   M+         K    ++L VHDE++ E P+ +      L   +M      A  +P
Sbjct: 812 IKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVMEQA--LALDVP 869

Query: 663 LKAEGYESKRY 673
           LK E  E + +
Sbjct: 870 LKVEVDEGENW 880


>gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635]
 gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635]
          Length = 876

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + + A    +            F        +     D      L  
Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|289434845|ref|YP_003464717.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171089|emb|CBH27631.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 875

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/662 (12%), Positives = 182/662 (27%), Gaps = 144/662 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
                       +            KE +E+    +V     ++     V        + 
Sbjct: 333 IGLTIHSDKGTYFFTKETAENSPAFKEWIESDASKVV-----YDAKKTMVAMHRLGYAVS 387

Query: 90  IHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                  ++ +       ++     V      +  + +E     A + KG       +R 
Sbjct: 388 GIT-FDIMLASYLLNPSDSIADFTSVAIRHDYTEVETDE-----AVYGKGAKRSTPEERV 441

Query: 147 KPNH----REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
              H      A  +  +    D+    ++      +   E  L ++   +  +G  VD  
Sbjct: 442 VAPHLARKAVAIAVLEKRLLDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTK 497

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +      L++ + SL      +    ++L   LF + GL     T+   +T 
Sbjct: 498 RLEDMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTA 556

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL S         ++   R    +     +  L++  + +     T      ++TGR 
Sbjct: 557 ADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRL 615

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378
           S      QN+P       +                         +R   + S  G K+  
Sbjct: 616 SSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSQPGWKIFS 650

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +   
Sbjct: 651 ADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN-- 708

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    +                                   
Sbjct: 709 ------------FGIVYGISDYGLSQ------------------------------NLGI 726

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +     +   +  V E   ++ +  ++  +     I                   
Sbjct: 727 TRKDAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------- 767

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617
                  R     ++ +             R            +Q  + DI+ + M+   
Sbjct: 768 -------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMS 811

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
                 K    ++L VHDE++ E P+ +      +   +M +       +PLK +     
Sbjct: 812 DRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGD 869

Query: 672 RY 673
            +
Sbjct: 870 TW 871


>gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133]
          Length = 876

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 97/687 (14%), Positives = 204/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + +      +            F        +     D      L  
Sbjct: 302 IET-SFDNVDFTSLKEAVIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 908

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/671 (13%), Positives = 178/671 (26%), Gaps = 147/671 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERT----VL 80
               +      +D +            +  + +++ L + D         F++      L
Sbjct: 358 HHSDIAGLGL-YDGNKGYFLAFETLQSVNAEPIRQWLSDADKEKWI----FDKHRAQLAL 412

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                + +        L+ +       +   +             GK  +A     E   
Sbjct: 413 SW-KGIKLRGVS-FDVLLASYLLDPTESTLTLSGV---------AGKYSVASLPADEQVF 461

Query: 141 CLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTIN 193
               +   P             +    +   +  +LE           E  L  +   + 
Sbjct: 462 GKGAKFKLPEEHLLGENLSLKAERVSRLVPVLKAKLEESGMQELYYELEHPLAGVLAEME 521

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  VD      L   +  +   +   +         +    ++L   LF +  L ++ 
Sbjct: 522 LAGIKVDKESLKQLGTEISDQLKTIMDRIYEQAGMT-FNINSPKQLGEVLFEKLQLPVQK 580

Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+   +T   VL            + + R   ++     +  L++ +  D     T   
Sbjct: 581 KTKTGYSTDAEVLEKLAPYHDIVGDILHYR-TLAKLQSTYVEGLLKEVRPDTGKVHTYYR 639

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P       +                         +R   + 
Sbjct: 640 QTIAATGRLSSQYPNLQNIPIRLEEGRK-------------------------IRKVFVP 674

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
              G  ++ AD + IE RVLA ++G++   +AF    D++  T    F V+ A+V  + R
Sbjct: 675 SKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGVSEAEVDANMR 734

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y            +  L +               +    N+   +    
Sbjct: 735 RSAKAVNFGIVYGIS-----DYGLSQNLGITRKEASRFIEQYFSVFRGVRNYMDSIIREA 789

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                                                              ++RR +P +
Sbjct: 790 KTQGYVTTL-----------------------------------------LQRRRYLPEI 808

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                                      R+ +NT                   +Q  + DI
Sbjct: 809 NASNYNLRSF---------------AERTAMNTP------------------IQGTAADI 835

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           +   M+         K    ++L VHDE++ E P+ +      L   +M      A  +P
Sbjct: 836 IKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVMEQA--LALDVP 893

Query: 663 LKAEGYESKRY 673
           LK E  E + +
Sbjct: 894 LKVEVDEGENW 904


>gi|315303334|ref|ZP_07873960.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
 gi|313628295|gb|EFR96802.1| DNA polymerase I [Listeria ivanovii FSL F6-596]
          Length = 875

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 80/657 (12%), Positives = 183/657 (27%), Gaps = 134/657 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
                       +            KE +E+    +V     ++     +        + 
Sbjct: 333 IGLTIHSDKGTYFFAKETAENSPAFKEWIESDASKVV-----YDAKKAMIAMHRLGYAVS 387

Query: 90  IHRWICTLVLARSNGLPSALKA-VGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNK 147
                  ++ +       ++      A++    ++E  + +  +  K     E +   + 
Sbjct: 388 GIT-FDIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESVVAPHL 446

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
                A  +  +    D+    ++      +   E  L ++   +  +G  VD      +
Sbjct: 447 ARKAVAIAILEKRLLDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTKRLEDM 502

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
              +      L++ + SL      +    ++L   LF + GL     T+   +T   VL 
Sbjct: 503 KVELAGRLKTLEESIHSL-AEEEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLE 561

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
           S         ++   R    +     +  L++  + +     T      ++TGR S    
Sbjct: 562 SLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDP 620

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383
             QN+P       +                         +R   + S  G K+  AD + 
Sbjct: 621 NLQNIPIRLEEGRK-------------------------IRQVFVPSQPGWKIFSADYSQ 655

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +        
Sbjct: 656 VELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN------- 708

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++    +                                        
Sbjct: 709 -------FGIVYGISDYGLSQ------------------------------NLGITRKDA 731

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +     +   +  V E   ++ +  ++  +     I                        
Sbjct: 732 KDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH---------------------- 767

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617
             R     ++ +             R            +Q  + DI+ + M+        
Sbjct: 768 --RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMSDRLKS 816

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            K    ++L VHDE++ E P+ +      +   +M +       +PLK +      +
Sbjct: 817 EKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871


>gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus]
 gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2]
 gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL]
 gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948]
 gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3]
 gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20]
 gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765]
 gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754]
 gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131]
 gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 876

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + + A    +            F        +     D      L  
Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNSKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6]
 gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6]
          Length = 951

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 105/707 (14%), Positives = 201/707 (28%), Gaps = 163/707 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------VMPQVL 57
             D E          G+  +A    +   +            C H          +   L
Sbjct: 366 AFDTE--------ASGLRPFAS--QLCGISLALSPGSAVYVPCGHSSGAQLSLAEVVAAL 415

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEAL 116
                + +    AHN+ F+  +L     + I +      T++ A   G  + LK +    
Sbjct: 416 GPFFADPNKAKYAHNAKFDIEML---LGVGIEVQGLAFDTMIAAALLGKRAGLKDLAFYE 472

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                 M   ++LI              +     +        Y   D  +T  +   LE
Sbjct: 473 LQLPDPMTPIEDLI----------GRGTKQISFAQVPIERATPYAAADADMTLRLVHALE 522

Query: 177 PLSSK-----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           P  +            E  L ++   +   G  +D      L Q +      ++QE+  +
Sbjct: 523 PQLATTPKLHDLYRRLELPLVHVLVQMEQAGIALDKPYIEYLGQRMGTRIAAIEQEIYQI 582

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-------HLEDLTETTCQRVLSSNKKLT--PQAIQV 276
             G   +    ++L   LF + GL         +    +     L   ++        ++
Sbjct: 583 AEGP-FNINSSDQLSDILFGKIGLSTEGVERTAKTKKYSITADTLERLRERDTSGICERI 641

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R   S+     ++ L   +N   GR+  T   +GA+ TGR S      QN+P  ++ 
Sbjct: 642 LEYRR-LSKLKSTYVDALPALVNPRTGRVHTTYNQVGAA-TGRLSSNDPNLQNIPVRTQE 699

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
             E                         +R   +A+ G + + AD + IE RVLA++  +
Sbjct: 700 GRE-------------------------IRRGFVAAPGHRFIAADYSQIELRVLAYITKD 734

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++AF+ G+D++  T A+ F VA  QV K+QR I K +   + Y   A          
Sbjct: 735 PNLVRAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIYGISA-----FGLAQ 789

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
              +         NS    +    ++     E      +     G           +   
Sbjct: 790 RTEMGRSEAQDLINSLFTRFPGIRDYINRTLEQGQTTGVVQTIFGRQ---------RAMP 840

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            +         A  + I       A     + ++                          
Sbjct: 841 ELQSRGPRRAAAEREAINAPIQGTAADIMKIAMIK------------------------- 875

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                   + +  R                        ++                ++ E
Sbjct: 876 ---MARALSERGLRTRL---------------------LLQVHDE-----------LILE 900

Query: 636 TPDTDEFNASMLY-HLMTSNPSWA----KG----LPLKAEGYESKRY 673
            P+ +    + L   +M    S A    +G    +PL  +      +
Sbjct: 901 APEEEVALVAELVREVMAGAYSLAWHDQEGQSHHVPLGVDVEIGPNW 947


>gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
 gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879]
          Length = 1102

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 92/745 (12%), Positives = 189/745 (25%), Gaps = 212/745 (28%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------------ 51
            +  D ET                +  ++ F+F FD         +H              
Sbjct: 491  VAFDCETNGLD----------VREADMVGFSFCFDGLHAYYVPFLHGGIKREKSKYEVMK 540

Query: 52   ------------------------------------VMPQVL-----KEALENT-DVTIV 69
                                                  P  +     K+ALE      ++
Sbjct: 541  SQSISQNLFSTEEAKPTFSLFDDTTMSKDSADNDTTNAPAQISQSDAKKALEILFSYPLI 600

Query: 70   AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGK 127
             HN  F+  +    F +         +++LA  +    +  L  +         K     
Sbjct: 601  GHNIKFDLHIAWHNFGIKPKHTP-QDSMLLAWLDDPSQSVSLDNL--------MKKHFNH 651

Query: 128  ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---- 183
             +IA                       +    Y   D   T +++   +           
Sbjct: 652  NMIAFSDIVPKKA-------TFDSIDIKTASNYAAEDAAATFQLYFYFKNTLYPHLFTLA 704

Query: 184  -----ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
                         + D G  ++ +    L         +L QE+         +    ++
Sbjct: 705  KDLEFPFIRTLCAMEDCGIAINYSYFKNLKTTFSHTLQQLQQEIYEKAGVS-FNLNSPKQ 763

Query: 239  LKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            +   LF    L  +   ++   T +  L + K   P    +   R    +     +  ++
Sbjct: 764  VAEILFDTLKLDTKRKGKSGYSTDEATLLALKDSHPVVPLLLEYR-EIFKLFSTYIEPIL 822

Query: 296  EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
            +   ++ R+  T    G + TGR S      QN+P  S                      
Sbjct: 823  KLGKNENRIYTTFLQTG-TNTGRLSSKSPNLQNIPVRSEMGR------------------ 863

Query: 356  PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                    +R   ++ +G KL+  D + IE R+LA  +G++  L++F    D++  T   
Sbjct: 864  -------SIRKGFVSRDGYKLLSLDYSQIELRLLAHFSGDKVLLESFHNNADIHAETAKL 916

Query: 416  SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
             F     +     R+I K +   L Y                                  
Sbjct: 917  LF-KDSNKDFSLLRSIAKSINFGLIYGM-------------------------------- 943

Query: 476  EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                           + +       T  ++  + +      V +       +  +     
Sbjct: 944  ------------GARKLSQTLNITQTEAKQYIEDYFATFPSVKQFLESQKDSILK--NGY 989

Query: 536  KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
             + +  ++R        +      L                                   
Sbjct: 990  SSTLLGRKRYFDFFSATEFMRANFLR---------------------------------- 1015

Query: 596  KLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLY 648
            +    I Q  + D++   M    K          ++L VHDE++ E  D+   +    L 
Sbjct: 1016 EGVNTIFQGSAADLIKLSMNEIYKKIESLDNDCFMLLQVHDELIFEIKDSIIESLSKELK 1075

Query: 649  HLMTSNPSWAKGLPLKAEGYESKRY 673
             +M +   +   +PL         +
Sbjct: 1076 EIMENI--YKLKVPLVCNLSIGNTW 1098


>gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 876

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + + A    +            F        +     D      L  
Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNSKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 878

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 96/660 (14%), Positives = 198/660 (30%), Gaps = 142/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A      P  +     D      +KE  E+  +   + +   +  +L     +D  +  
Sbjct: 336 IAIKTKKSPTYI--AEPDEDFVTNMKEIFEDEKILKNSFDIKEDLVLLAK-LGIDGAL-P 391

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           +   +++        +   +         K      L       E       +       
Sbjct: 392 YDDIMLMHYLIDPSRSSYDM---------KTLSQSYLDYEVNNPEDLLGKGKKALKYEDL 442

Query: 153 AWRLFGE---------YCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            +   G          Y   D  V     +   +     E EL  +   +   G+  D  
Sbjct: 443 DFDKLGNFMASEINAIYDAKDKLVDKLNEYHMYDLYKEIEIELSKVLADMEIVGFVTDRK 502

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
           +   L + +D +  +L QE+  L+     +    ++L   LF +  L +   T+   +T 
Sbjct: 503 VLEELKEGIDADIDELTQEIYELSGS-EFNINSTKQLGEVLFKDLELPVIKKTKTGFSTD 561

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +       ++   R    +     +  L +A++ DGR+R T +   A+ TGR 
Sbjct: 562 ASVLEKLRDKHQIIPKIERYR-ELFKLRSTYIEGLEKAIDYDGRIRSTFRQNIAA-TGRL 619

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QNLP  +                              +R    A EGK L+ A
Sbjct: 620 SSQDPNLQNLPIKTDEGR-------------------------LIRKAFKAEEGKILIDA 654

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA ++G++  + AF   +D++  T ++ F+    +VTK QR+  K +   +
Sbjct: 655 DYSQIELRILASLSGDEHMIDAFINVDDIHRKTASKVFHTPLEEVTKRQRSEAKAVNFGI 714

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++    +                                    
Sbjct: 715 I--------------YGISDYGLSQ------------------------------NLNIS 730

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +     +   +  + E  + + +  ++                          +  
Sbjct: 731 RKEAKEYIDNYMASYPSIKEYMDSIVEKAKE--------------------------DGY 764

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM---- 615
           +     R     ++ +    + +  ++               +Q  + DI+   M+    
Sbjct: 765 VETLFKRRRYVPEINSRNFNVRSFGQR---------VALNTPIQGTAADIIKIAMIETYK 815

Query: 616 --NATKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
                K    I+L +HDEI+ E   + ++    +L   M S       +PL  +      
Sbjct: 816 NLKKEKIDAKIILQIHDEIILEASKEDEDRAIEILRESMESAA--NLEVPLIVDIDTGDS 873


>gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122]
 gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122]
          Length = 876

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + + A    +            F        +     D      L  
Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELHGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDILMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM
           10507]
          Length = 878

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 97/681 (14%), Positives = 191/681 (28%), Gaps = 155/681 (22%)

Query: 19  CGICKYAEDVCVILFAFGFDDHPVELWDCV---HDPVMPQVLKEALENTDVTIVAHNSYF 75
            G+  +AE+  ++  A       +   +         +   L +      V      + F
Sbjct: 323 VGVQIFAEEGDLLGVAIAVSREEIYYVEVSGFVSGEYLADKLAQ------VAKQTQIAAF 376

Query: 76  ERTVLKACFNLDIPIHRWICTL---VLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
              VL       + +  W  T    V A               LK +    + GKE + +
Sbjct: 377 HVKVLLKY----VNVETWTQTFGAEVAAYLLNP----------LKTAYDYEDIGKEYLGQ 422

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKE 182
              G         +K    E              V   +   LE               E
Sbjct: 423 IFPGRQEVVGKKGDKDALAEKPEEMKRLGCFMAYVALAVKAPLEEALREAGMERIFQEIE 482

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L +   ++   G  V+        + + V   +L++++         +    ++L   
Sbjct: 483 MPLVFTLNSMEKEGIQVEGEALRVYGEQLQVRIGELEKQICGQAG-EDFNINSPKQLGAI 541

Query: 243 LFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           LF +  L     T+   +T   VL       P    +   R   ++      + L   + 
Sbjct: 542 LFEKMKLPGGKKTKTGYSTAADVLDKLAPKHPIVRDILEYRQ-LTKLKSTYADGLAGYIG 600

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            DGR+  T      + TGR S      QN+P                             
Sbjct: 601 EDGRIHSTFHQ-TITATGRISSTEPNLQNIPIRMELGR---------------------- 637

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +R   +  EG   + AD + IE RVLA M+G++  ++A+   +D++  T ++ F+ 
Sbjct: 638 ---LIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEKLIQAYREAQDIHRLTASQVFHT 694

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT  QR   K +                    G++    +  +             
Sbjct: 695 PFEEVTDLQRRNAKAVNFG--------------IVYGISSFGLSQDLSI----------- 729

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                       + +   + ++    + L    ++  E+G    
Sbjct: 730 -------------------TRKEAADYIERYFSTYPKIKGFLDGL---VKKGKEDGYVTT 767

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                                    GR     ++ ++     +      R          
Sbjct: 768 M-----------------------FGRRRPIPELKSSNFMQRSF---GERIAMNSP---- 797

Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMT 652
             +Q  + DI+   M               ++L VHDE++ ET + +    S +    M 
Sbjct: 798 --IQGTAADIIKIAMNRVYSRLRQEGLRSKLILQVHDELLIETWEEELEQVSEILLEEMR 855

Query: 653 SNPSWAKGLPLKAEGYESKRY 673
              S    + L+ + +  K +
Sbjct: 856 QAAS--LDVALEVDMHTGKNW 874


>gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
 gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2]
          Length = 873

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 219/702 (31%), Gaps = 181/702 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---------DPV 52
             +  D ET S             E+  ++ F+F F+++        H         D  
Sbjct: 321 NIVSFDTETTSL------------ENPKIVGFSFAFEENKAYYVPINHFYLGVSKQIDEK 368

Query: 53  M-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARSNGL--PSA 108
           +  + +++ LE     ++ HN  F+  +LK      I     +  T++L        P  
Sbjct: 369 IALKAIEKILE---KKVIGHNLKFDFKMLKDY---KIKTPTPFADTMILGWIIDPDSPVG 422

Query: 109 LKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L ++ +  L   + K +E                   +N+       +   +Y   D  +
Sbjct: 423 LDSLAKRYLNHQNIKYKEI----------------VGKNQNFSEIDIKTAAKYASEDAII 466

Query: 168 TREIFKRLEPLSS---------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           T ++++ L+  +           E  L  +   +   G  VD+     L + +  +   L
Sbjct: 467 TLKLYEVLKEKTWEEVKWDIENIEMPLINILIDMEKEGIKVDIEYLEKLQKELTQKLENL 526

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQAIQ 275
            +E+ +L      + +  ++L   LF    L +        +T ++VL+S K   P   +
Sbjct: 527 TKEIYNLAGS-EFNIKSPKQLSHILFKVLKLPVKKKTKTGYSTDEKVLNSLKNTHPIIEK 585

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334
           +   R +  +     +  L E    D   +    FL   + TGR S      QN+P  + 
Sbjct: 586 LLEYR-KFDKLLTTYIIPLKEYAKKDKNQKVYTNFLQTGTATGRLSSKNPNLQNIPTSTE 644

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R+  I    K  +  D + IE R+LA  + 
Sbjct: 645 ---------------------------INIRNAFI--TDKLFISLDYSQIELRLLAHFSK 675

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   ++AF   +D+++ T A+ F        K+ R+I K +                   
Sbjct: 676 DPHLIEAFLNDKDIHLETAAKIFG---EDKAKEYRSIAKSINF--------------GLI 718

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G+                                 + +          +   + + +  
Sbjct: 719 YGMGP------------------------------KKLSETINVSTKEAKEFIEKYFENF 748

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           S V +    + +   +T E G      K                           + D  
Sbjct: 749 STVKDF---IEKTKVETKEKGYVETLFK------------------------RRRFFDFN 781

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--GYDIVLTVHDEI 632
           +  +              Y  +    I Q  + DI+ + M++         ++L +HDE+
Sbjct: 782 SANART---------LAAYEREAVNTIFQGSAADIIKKAMIDIKNKFPSSKMILQIHDEL 832

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           + E  + DE        +M +       +PLK     +KR+ 
Sbjct: 833 IFEIDNKDEAY--EYKEIMENAIK--LEVPLKVGISFAKRWG 870


>gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10]
 gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10]
          Length = 896

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 93/644 (14%), Positives = 196/644 (30%), Gaps = 143/644 (22%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
             +   L+E  E+ D+    H+       LK+   +++  +    T + A       +  
Sbjct: 371 ETVVNELREIFESKDIEKYGHDLKNLYKYLKSH-GIELE-NVIFDTFIAAYILEPTRSTY 428

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E   LS  K+++    +              ++  +           C   V     
Sbjct: 429 TISE---LSEDKLKQSITPVEILYDKHGKRLEQGQDVSSSEV--------CAAAVNAIYG 477

Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           + ++L P+             E  L  +   +  RG+ VDV      ++ +D     L+ 
Sbjct: 478 LTQKLRPIIRDNGQDELYYKIELPLVEVLANMELRGFKVDVENLKAYSKELDSRLVILEN 537

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           E+         +    ++L   LF + GL +   T+   +T   VL           ++ 
Sbjct: 538 EIYMQAG-ETFNINSPKQLGVILFEKLGLPVGKKTKTGYSTSAEVLEQLSYKHEIVERIL 596

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R    +      + L+  +  DG++         + TGR S      QN+P       
Sbjct: 597 EYRQ-LMKLKSTYADGLLSVLEQDGKIHSNFNQ-TVTATGRISSTEPNLQNIPVKLEMGR 654

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQ 396
           +                         +R   I +     L+ AD + IE RVLA + G+ 
Sbjct: 655 K-------------------------IRKVFIPTNSDYVLLDADYSQIELRVLAHITGDP 689

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF   ED++ TT ++ F + P +V+   R+  K +   +                G
Sbjct: 690 NMIEAFINNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIV--------------YG 735

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +   + +  +                                      +    +  K+S+
Sbjct: 736 IGDFSLSKDI------------------------------GVTKKEARKYIDDYLDKYSK 765

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E  ++  +  ++                             +     R     ++ ++
Sbjct: 766 VKEYMSDTVEKGKE--------------------------FGFVTTLYNRRRYLPELKSS 799

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
              + +      R            +Q  + DI+   M+         K    ++L VHD
Sbjct: 800 NFNMRSF---GERVAMNTP------IQGSAADIIKISMVKVYTELKKRKLKSKLILQVHD 850

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E++ ET  ++      +L   M +       +PL  +      +
Sbjct: 851 ELIVETEKSELEEVSKLLKDCMENAVQ--LKVPLTVDVKHGDSW 892


>gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4]
 gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4]
          Length = 875

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 90/662 (13%), Positives = 184/662 (27%), Gaps = 131/662 (19%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERTVLKAC 83
               +  FA   +                   +  E  ++        ++     VL   
Sbjct: 327 HQADIAGFALVHEKGR-YFIPT---ETALRSDLFVEWAKDETKKKWLLDAKRGVVVLGW- 381

Query: 84  FNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              D+ +       L+ +       +   + +       K  +  E +  + KG   +  
Sbjct: 382 --KDVLLDGVDFDLLMASYLLDPSHSSHDLSDIATRKGAKSIQADEAV--YGKGAKRKVP 437

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                  H           K  +    +  ++ E     E  L  +   +   G  VD+ 
Sbjct: 438 ETDVLAEHLVRKANVIYELKERMEEELKKNEQFELFKDLEMPLSVVLGRMETEGVKVDID 497

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +L++ +         +    ++L   LF + GL +   T+   +T 
Sbjct: 498 QLKAMGEDLASRLAELEKHIHEHAGVS-FNINSPKQLGEVLFEKLGLPVIKKTKTGYSTS 556

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL    +       + + R    +     +  LV+  +       T      ++TGR 
Sbjct: 557 ADVLEKLAEDHEIIRHILHYRQ-LGKLNSTYIEGLVKVTHKGTSKIHTRFNQALTQTGRL 615

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   I   EG K++ 
Sbjct: 616 SSTDPNLQNIPIRLEEGRK-------------------------IRKAFIPSEEGWKILA 650

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  + AF+   D++  T    F+V+   VT   R   K +   
Sbjct: 651 ADYSQIELRVLAHIAQDEKLITAFKEDMDVHTKTAMDVFHVSEEDVTSMMRRSAKAVNFG 710

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +               + +   +   + E   E+      
Sbjct: 711 IVYGIS-----DYGLSQSLGITRKEAAKFIERYLASYPNVAEYMERIIEEARENGYVSTL 765

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 766 -----------------------------------------LNRRRYLPELTSRNFNQRS 784

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617
                             R+ +NT                   +Q  + DI+ + M+   
Sbjct: 785 F---------------AERTAMNT------------------PIQGTAADIIKKAMVEMA 811

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
                      ++L VHDE++ E P  +      +   +M +    A  +PLK +     
Sbjct: 812 LRLEEANLKSRLLLQVHDELIFEVPPEEVDEMMKIVPEVMENAVELA--VPLKVDISAGD 869

Query: 672 RY 673
            +
Sbjct: 870 TW 871


>gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909]
          Length = 876

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 96/663 (14%), Positives = 194/663 (29%), Gaps = 131/663 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81
           Y +D  ++ F F  +   V +     D    + L + LE+ + T + +++   +   V  
Sbjct: 328 YLKDA-ILKFGFYTNHQHVVI--NADDVKDYKNLVQWLEDKNTTKIVYDAKKTY---VSA 381

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               ++I        ++ +       ++  V     +S       K+ I  F KG+ H  
Sbjct: 382 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSV--VSLYGQNYVKDNITVFGKGKKHHI 438

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
             +     H  +           +    E + ++E L   E  L  +   + + G   D+
Sbjct: 439 PEESILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDI 498

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                +   +  +   L   +   + G   +    ++L   LF    L +   T+   +T
Sbjct: 499 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 557

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    +   R   S+     +  L + ++ D R+        A +TGR
Sbjct: 558 AVDVLEKLQGEHPIIDDILEYRQ-LSKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377
            S      QN+P       +                         +R      S+   ++
Sbjct: 616 LSSVDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 650

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +  ++    AF  G D++  T  + FNV   QV    R   K +  
Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++    +                                  
Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLG 726

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +     +      V +  +++    +     G                      
Sbjct: 727 ITRKKAKAFIDDYLASFPGVKQYMSDI---VKDAKAQGYVETLLH--------------- 768

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   R     D+ +             R            +Q  + DI+   M+  
Sbjct: 769 --------RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKF 811

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670
           ++          ++L VHDE++ E P ++  + S  +  +M         +PLK +    
Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869

Query: 671 KRY 673
             +
Sbjct: 870 ATW 872


>gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
 gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC
           35098]
          Length = 880

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 94/660 (14%), Positives = 198/660 (30%), Gaps = 142/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A    D P  + D   D       K+  E+  +   + +   +  VL     +D+ +  
Sbjct: 338 LAIKTKDSPAYILD--PDQAFIDSFKDVFEDEKILKNSFDIKEDI-VLLNKLGIDLNL-P 393

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           +   +++        +   +         K      L               ++      
Sbjct: 394 FDDLMLMHYLIDPSRSSYDL---------KTLSQAYLDYEVISEVDLLGKGKKSLSYGEL 444

Query: 153 AWRLFGEY------CKGDVTV----TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            +     Y         D           +K  +     E +L  +   +   G+  D  
Sbjct: 445 DYDKLSNYLASELNAIEDAKAKLVDMLNEYKMYDLYEDIEIKLSKVLANMEIVGFVTDRK 504

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
           +   L + ++ +  KL  E+  L      +    ++L   LF +  L +   T+   +T 
Sbjct: 505 VLLDLKEDINKDLEKLTSEIYELAGS-EFNINSTKQLGEVLFKDLDLPVIKKTKTGFSTD 563

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +       ++   R    +     +  L +A++ DGR+R T +   A+ TGR 
Sbjct: 564 ASVLEKLRDKHQIIPKIEKYR-ELFKLQSTYIEGLEKAIDDDGRIRSTFRQNIAA-TGRL 621

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QNLP  +                              +R    A +GK L+ A
Sbjct: 622 SSQDPNLQNLPIKTDEGR-------------------------LIRKAFKAGQGKILIDA 656

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA ++G++  ++AF  GED++  T ++ F+    +VTK QR+  K +   +
Sbjct: 657 DYSQIELRILASLSGDEHMIEAFRNGEDIHAKTASKVFHTPLDEVTKRQRSDAKAVNFGI 716

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++    +                                    
Sbjct: 717 I--------------YGISDYGLSQ------------------------------NLNIP 732

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +     +   +  +    + + +  ++                          +  
Sbjct: 733 RKEAKAYIDNYMASYPSIKAYMDSIVEKAKE--------------------------DGF 766

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +     R     ++ +    + +  ++               +Q  + DI+   M+   K
Sbjct: 767 VETLFNRRRYVPEINSKNFNVRSFGQR---------VALNTPIQGTAADIIKIAMIETDK 817

Query: 620 ------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
                     IVL +HDEI+ E   +  +    +L + M         +PL  +    + 
Sbjct: 818 NLKKAGLDAKIVLQIHDEIILEASLEDKDSAMEILRNSMQEAA--NLKVPLIVDIDTGES 875


>gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
 gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L]
          Length = 909

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 92/657 (14%), Positives = 204/657 (31%), Gaps = 140/657 (21%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICT 96
           D + +   D      MP+ + + +E+ D+  +  N   +   L+      I + +     
Sbjct: 368 DPYKIYYMDKELAESMPKEIVDLIEDEDIEKIGCNIKSDYINLRPY---GIRLGKIGFDI 424

Query: 97  LVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            +          ++      A K   +KM   ++L+ +  K + +E +   +        
Sbjct: 425 SIAEYIIDSKTSTSYDFDVIASKYIYKKMTSEEDLLGKGAKAKKYEDIEKEDLDKFAIGI 484

Query: 155 RLFG-------EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
                           D  + + ++         E  L  +   +   G  VD      L
Sbjct: 485 MNTLSGVVPKMRQIIKDDDMEKLLY-------DVEIPLIEVLGDMEYIGIHVDKKTLDEL 537

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
             + +     L+ ++  ++     +    ++L   LF +  L +   T+   +T   VL 
Sbjct: 538 GVLFNDRIKYLETKIYDISG-EKFNINSPKQLGLILFEKLELPVIKKTKTGYSTNAEVLE 596

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCV 323
             +   P    + + R    +     +  +   +N  DGR+  +     A+ TGR S   
Sbjct: 597 KLRDKHPIIDMITDYR-TVVKLKSTYVEGINNLINPLDGRIHSSFNQAIAT-TGRISSTD 654

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  +                          +   +R   +A +G KLV AD + 
Sbjct: 655 PNMQNIPVRT-------------------------DLGRQLRRVFVAGQGSKLVDADYSQ 689

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E RVLA M+G++  ++AF+ G D++  T ++ F V   +V+ + R+  K +   +    
Sbjct: 690 VELRVLADMSGDEDMIEAFDRGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGII--- 746

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                                                      ++    A +        
Sbjct: 747 -----------------------------------------YGKSDFGLAKDLDISIAKA 765

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +   + +  +  ++    + +        E G +                          
Sbjct: 766 KEYIENYFARFPKIKGFMDHI---VSDAEEKGYSTTI----------------------- 799

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
            GR     ++ ++         +  R            +Q  + DI+   M+N       
Sbjct: 800 FGRRRYIPEIKSSNFVEKN---RGIRAAMNAP------IQGSAADIIKIAMVNVHNRLEE 850

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                +++L VHDE++ E+P  +      +L   M +       + L  +      +
Sbjct: 851 EGLKSNLILQVHDELIVESPIEEVERVRVLLKEEMENAV--NLKVNLDVDLNVGDSW 905


>gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
 gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316]
          Length = 740

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 88/683 (12%), Positives = 180/683 (26%), Gaps = 162/683 (23%)

Query: 29  CVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVLK---- 81
            ++  +  F+++        +      + + L E   +  V++V  +      V      
Sbjct: 178 EILGMSVCFNENEAIYIPVENFITADYLGKKLSEL--SNSVSLVTFDIKESYRVFTPFEV 235

Query: 82  --ACFNLDIPIH---------RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
               +                R    L+ A           V         K   G  L 
Sbjct: 236 SDRDYGYSCKGEHTEDYKSKPRCFDDLIAAYLVNPNKNDYEVS-----DVAKEYLGLSLE 290

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE---IFKRLEPLSSKEQELWY 187
            +                      +   +Y      V  +   +  +           + 
Sbjct: 291 KKIDLFGKK--------SIREADDKSVVQYACKCAFVCFKAEPLICKKLEKLQMLDLFYN 342

Query: 188 LDQT-------INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
           ++         +   G              + +  ++L++ +         +    ++L 
Sbjct: 343 IEMPLSYVLYSMEKEGIIARRDELKAYGDKLQIRISELEKSIYEAAGV-EFNINSPKQLG 401

Query: 241 TWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF   GL  E  T++   T   VL       P    +   R   ++      + L   
Sbjct: 402 EILFERLGLPAEKKTKSGYSTAADVLEKLAPDYPIVADILEYR-GLAKLKSTYADGLAAY 460

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +  DGR+  +      + TGR S      QN+P  +                        
Sbjct: 461 IEEDGRIHTSFNQ-TITATGRISSTEPNLQNIPMRTELGR-------------------- 499

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R   +  E      AD + IE R+LA M+ +Q  + A+  G+D++  T ++ F
Sbjct: 500 -----LIRKVFVPKEDHVFADADYSQIELRILAHMSEDQELIAAYHEGKDIHGITASKVF 554

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
           +V   +VT  QR   K +   + Y            +  L+                   
Sbjct: 555 HVPFEEVTPLQRRNAKAVNFGIVYG-----ISSFGLSQDLS------------------- 590

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                     +     + + +  V      +    ++       
Sbjct: 591 --------------------ISVKEAKEYMDKYFETYPGVKAYQERVIADAKE------- 623

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                  +   GR     ++  +   +        R        
Sbjct: 624 -------------------KGYSLTMFGRRRPIPELKASNYMMRQF---GERVAMNAP-- 659

Query: 598 TENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHL 650
               +Q  + DI+   M+N        K    ++L +HDE+V ET   +E    ++L   
Sbjct: 660 ----IQGTAADIMKIAMINVYFRLKKEKLVSKLILQIHDELVIETLKDEEEKVTALLTQE 715

Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673
           M         +PL AE +    +
Sbjct: 716 MERAAD--LSVPLLAECHSGTDW 736


>gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
 gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19]
          Length = 876

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + + A    +            F        +     D      L  
Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGENHIVINADDINNYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AKRTAMNT----------- 794

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 795 -------PIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
 gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139]
          Length = 876

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + + A    +            F        +     D      L  
Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGENHIVINADDINNYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
 gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200]
          Length = 872

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 97/694 (13%), Positives = 201/694 (28%), Gaps = 156/694 (22%)

Query: 11  RSPIDLTKCGI----------CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
            S +D+ K                  +  +   AF F +  V   D        + LKE 
Sbjct: 300 WSKVDIRKLITLLQDSRNIAFYPLIYEGEIKKIAFSFGEDTV-YIDVFQ----IEDLKEI 354

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            E  +     H    +  V  +   ++    ++I T V+A       +   +   LK   
Sbjct: 355 FEKEEFEFTTHEIK-DFLVKLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLK--- 409

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-- 178
                 K L       E         K        +  +Y         ++ ++L     
Sbjct: 410 ------KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIE 463

Query: 179 --------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                      E  L  + + +   G+ +D  +   L+Q +D    ++  ++        
Sbjct: 464 EMDMKKLLLEIEMPLVEVLKLMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQ- 522

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L  +LF +  L +   T+   +T   VL            +   R   ++  
Sbjct: 523 FNVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDVVSDIIEYRQ-LTKLK 581

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              ++  +  M+ + R+    + +  + TGR S      QN+P                 
Sbjct: 582 STYIDGFLPLMDENNRVHSNFKQMV-TATGRISSTEPNLQNIPIREEFGR---------- 630

Query: 348 TSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                           +R   I   +   +V AD + IE RVLA ++G++  +++F   E
Sbjct: 631 ---------------QIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNE 675

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D+++ T A  F V   +VT + R   K +                    G++    +   
Sbjct: 676 DIHLRTAAEVFKVPMEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS--- 718

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                       +        +     + +++  V E   ++ +
Sbjct: 719 ---------------------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVR 751

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
             ++                          N  +     R     ++ +      T   Q
Sbjct: 752 FAKE--------------------------NGYVTTIMNRRRYIPEINSRNF---TQRSQ 782

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTD 640
             R            +Q  + DI+   M+   +          ++L VHDE+V +T   +
Sbjct: 783 AERLAMNAP------IQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDE 836

Query: 641 EFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
                 +    M +       +PL  E      +
Sbjct: 837 VDIVKKILKENMENVIK--LKVPLVVEIGIGPNW 868


>gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16]
 gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16]
          Length = 877

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 89/684 (13%), Positives = 184/684 (26%), Gaps = 145/684 (21%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70
            SP  L    + +      +   A   +      +      V     +    + +     
Sbjct: 314 SSPSALVVEVLAENYHQAEIAGMAVANEKG-CFYFP-TEKAVKSDAFRAFARSQEKKKWL 371

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            ++      L     +D+         + +       +   +              ++  
Sbjct: 372 FDAKRAVVALAWH-GVDLNGVD-FDLQMASYLLDPSLSSHEIS---------DIATRKGT 420

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-------- 182
               + E       +             E+          +   LE   ++         
Sbjct: 421 GGVAEDEAVYGKGAKR---SLPEEAALAEHLCRKANAMFTLKSTLEDELAQNEQLELLKK 477

Query: 183 --QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
               L  +   +   G  VD      + + +      L++ +         +    ++L 
Sbjct: 478 LEMPLSVVLGRMEKEGVRVDREQLEEMGKDLSDRLNTLEKAIHKEAG-EPFNINSPKQLG 536

Query: 241 TWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+   +T   VL       P    +   R    +     +  L++ 
Sbjct: 537 VILFEKLGLPPVKKTKTGYSTSADVLEKLAGTHPIIEHLLLYRQ-LGKLYSTYIEGLLKV 595

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           ++S+     T      ++TGR S      QN+P       +                   
Sbjct: 596 IDSETGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRK------------------- 636

Query: 358 QIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R   +A  EG K+V AD + IE RVLA ++G++   +AF TG D++  T    
Sbjct: 637 ------IRKAFVASKEGWKIVAADYSQIELRVLAHISGDERMKEAFLTGMDIHTKTAMDV 690

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F+V   +VT   R   K +   + Y            +  L +         +     + 
Sbjct: 691 FHVKREEVTDLMRRSAKAVNFGIVYGIS-----DYGLSQSLGITRKEAKDFIDRYLASYP 745

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
             + +   + +   E                                             
Sbjct: 746 QVKAYMENVVKEAKEKGYVQTL-------------------------------------- 767

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                +RR +P +  +                        R+ +NT              
Sbjct: 768 ---LARRRYLPELKSRNFNQRSF---------------AERTAMNTP------------- 796

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-H 649
                +Q  + DI+   M+  ++A        +++L VHDE++ E    D      L   
Sbjct: 797 -----IQGTAADIIKRAMVKMSEALEETGLKANMLLQVHDELIFEVAPDDVEPLQELVTE 851

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
           +M         +PL+ +      +
Sbjct: 852 VMEQALE--LDVPLQVDVSSGNSW 873


>gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis]
          Length = 932

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 89/653 (13%), Positives = 183/653 (28%), Gaps = 148/653 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNLDIPIHRWIC 95
             P  +W       +    K    +     +     ++     +L    +++I       
Sbjct: 400 PEPPRVWVVDDPGPIFAEAKPFWSSEKHRKLF----YDVKSLWLLARQEDVEIQGID-GD 454

Query: 96  TLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            L+ A          +L  +   L       E GK+++           L+        +
Sbjct: 455 GLIGAYLLDPLANNYSLARLAHELIDWKISPEAGKQVLPAEDAALAVAGLFHLTPAMEAK 514

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                      DV +                    +  ++   G  V+  +   +   ++
Sbjct: 515 LGEESLGKLYRDVELPLA----------------PILGSMEWIGIKVNPKVLQDMAGELN 558

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269
            +  KL  E+  L      +    ++    LF + GL +   T+   +T   VL      
Sbjct: 559 SDIQKLQAEIHELAG-ETFNINSTQQFGKILFEKLGLPVIKRTKTGYSTDVEVLEELSDR 617

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
            P   +V   R    +     +  L+  ++  +GR+  +      + TGR S      QN
Sbjct: 618 HPIVPKVLEFRQ-LMKLKSTYVEGLLPLIDGPEGRIHTSFNQSV-TATGRLSSTEPNLQN 675

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEAR 387
           +P                                 +R   IA   G  L+ AD + IE R
Sbjct: 676 IPVRLEQGRH-------------------------IRKAFIAPEPGWTLLAADYSQIELR 710

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++ +     AF   +D++  T +  F+V    VT++ R   K +   + Y      
Sbjct: 711 ILAHLSDDPSFKDAFAKNQDIHTRTASEVFDVPMGNVTREMRRRAKAVNFGIVYGIS--- 767

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                 +  L +               +     +   +     +                
Sbjct: 768 --DFGLSRDLGVTRGEAKEYIEGYFRRYHGVRGYIDRIIAEARQQGFVTTL--------- 816

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
                                             +RR +P +++K               
Sbjct: 817 --------------------------------LGRRRRLPDLFVKNKIRQNF-------- 836

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
                    R+ +NT                   +Q  + DI+   M+   KA       
Sbjct: 837 -------GERTAMNT------------------PIQGTAADIIKAAMVKIPKALKDHGLK 871

Query: 622 YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +    + ++  +M         +PL  +  +   +
Sbjct: 872 TRMLLQVHDELIFEVPEEELTVVAPLIKRIMEKTIE--ISVPLTVDVKKGANW 922


>gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
 gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782]
          Length = 896

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 89/644 (13%), Positives = 193/644 (29%), Gaps = 143/644 (22%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK 110
                 L+E  E+ D+    H+       LK+   +++  +    T + A       +  
Sbjct: 371 QEALNELREIFESKDIEKYGHDLKNLYKYLKSH-GIELE-NVIFDTFIAAYILEPTRSTY 428

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E       K+++    +             +++  +           C   V     
Sbjct: 429 TISELY---EDKLKQSITPVEILYDKHGKRLQQEQDISSSEV--------CAAAVNAIYV 477

Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           + ++L P+             E  L  +   +  RG+ VDV      ++ +D     L+ 
Sbjct: 478 LIQKLRPIIRDNGQDELYYEIELPLVEVLADMELRGFKVDVEGLQAYSKEMDSRLVILEN 537

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           E+         +    ++L   LF + GL +   T+   +T   VL           ++ 
Sbjct: 538 EIYMQAG-ETFNINSPKQLGVILFEKLGLPVGKKTKTGYSTNAEVLEQLSYKHEIVERIL 596

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R    +      + L+  +  DG++         + TGR S      QN+P       
Sbjct: 597 EYRQ-LMKLKSTYADGLLSVLEQDGKIHSNFNQ-TVTATGRISSTEPNLQNIPVKLEMGR 654

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQ 396
           +                         +R   I + +   L+ AD + IE RVLA +  + 
Sbjct: 655 K-------------------------IRKVFIPTNQDYVLLDADYSQIELRVLAHITDDS 689

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF   ED++ TT ++ F + P +V+   R+  K +   +                G
Sbjct: 690 NMIEAFLKNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIV--------------YG 735

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           +   + +  +                                      +    +  K+S+
Sbjct: 736 IGDFSLSKDI------------------------------GVTKKEARQYIDDYLDKYSK 765

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V E  ++  +  ++                             +     R     ++ ++
Sbjct: 766 VKEYMSDTVEKGKE--------------------------FGFVTTLYNRRRYLPELKSS 799

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
              + +      R            +Q  + DI+   M+              ++L VHD
Sbjct: 800 NFNMRSF---GERVAMNTP------IQGSAADIIKISMVKVYNELKKRKLKSKLILQVHD 850

Query: 631 EIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E++ ET  ++      +L   M +       +PL  +      +
Sbjct: 851 ELIVETEKSELEEVSKLLKDCMENAVQ--LKVPLTVDVKHGDSW 892


>gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
 gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9]
          Length = 872

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 98/697 (14%), Positives = 202/697 (28%), Gaps = 158/697 (22%)

Query: 9   ETRSPIDLTKCGI----------CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           E  S +D+ +                  +  +   AF F    V   D        + LK
Sbjct: 298 EKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTV-YIDVFQ----TEDLK 352

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E  E  D     H    +  V  +   ++    ++I T V+A       +   +   LK 
Sbjct: 353 EIFEKEDFEFTTHEIK-DFLVRLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLK- 409

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                   K L       E         K        +  +Y         ++ ++L   
Sbjct: 410 --------KYLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICSRCVYLFDLKEKLMNF 461

Query: 179 ----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L  + +++   G+ +D  +   L+Q +D    ++  ++      
Sbjct: 462 IEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEAGY 521

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L  +LF +  L +   T+   +T   VL            +   R   ++
Sbjct: 522 Q-FNVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDIVSDIIEYRQ-LTK 579

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                ++  +  M+ + R+    + +  + TGR S      QN+P               
Sbjct: 580 LKSTYIDGFLPLMDENNRVHSNFKQMV-TATGRISSTEPNLQNIPIREEFGR-------- 630

Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                             +R   I    +G  +V AD + IE RVLA ++G++  +++F 
Sbjct: 631 -----------------QIRRAFIPRSRDGY-IVSADYSQIELRVLAHVSGDEKLIESFM 672

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
             ED+++ T +  F V   +VT + R   K +                    G++    +
Sbjct: 673 NNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS 718

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                          +        +     + +++  V E   +
Sbjct: 719 ------------------------------RDLKISRKEAKEYINNYFERYKGVKEYIEK 748

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           + +  ++                          N  +     R     ++ +      T 
Sbjct: 749 IVRFAKE--------------------------NGYVTTIMNRRRYIPEINSRNF---TQ 779

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP 637
             Q  R            +Q  + DI+   M+              ++L VHDE+V +T 
Sbjct: 780 RSQAERLAMNAP------IQGSAADIIKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTY 833

Query: 638 DTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
             +      +    M +       +PL  E      +
Sbjct: 834 KDEVDIIKKILKENMENVVQ--LKVPLVVEIGVGPNW 868


>gi|313633103|gb|EFS00003.1| DNA polymerase I [Listeria seeligeri FSL N1-067]
          Length = 566

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 81/664 (12%), Positives = 177/664 (26%), Gaps = 148/664 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
                       +            KE +E+    +V     ++     V        + 
Sbjct: 24  IGLTIHSDKGTYFFTKETAENSPAFKEWVESDASKVV-----YDAKKTMVAMHRLGYAVS 78

Query: 90  IHRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                  ++ +       ++     V      +  + +E             +     R+
Sbjct: 79  GIT-FDIMLASYLLNPSDSIADFTSVAIRHDYTEVETDE-----------AVYGKGAKRS 126

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVD 200
            P                  + + +   LE       +   E  L ++   +  +G  VD
Sbjct: 127 TPEESVVAPHLARKAVAIAVLEKRLLDDLEKNEQLSLMEDLELPLTFVLAQMEMQGVSVD 186

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +   +      L++ + SL      +    ++L   LF + GL     T+   +
Sbjct: 187 TKRLEDMKVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYS 245

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL S         ++   R    +     +  L++  + +     T      ++TG
Sbjct: 246 TAADVLESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTG 304

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376
           R S      QN+P       +                         +R   + S  G K+
Sbjct: 305 RLSSVDPNLQNIPIRLEEGRK-------------------------IRQVFVPSQPGWKI 339

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
             AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K + 
Sbjct: 340 FSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN 399

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    +                                 
Sbjct: 400 --------------FGIVYGISDYGLSQ------------------------------NL 415

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +     +   +  V E   ++ +  ++  +     I                 
Sbjct: 416 GITRKDAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH--------------- 458

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                    R     ++ +             R            +Q  + DI+ + M+ 
Sbjct: 459 ---------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMIL 500

Query: 617 A------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                   K    ++L VHDE++ E P+ +      +   +M +       +PLK +   
Sbjct: 501 MSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAF 558

Query: 670 SKRY 673
              +
Sbjct: 559 GDTW 562


>gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 872

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 97/697 (13%), Positives = 202/697 (28%), Gaps = 158/697 (22%)

Query: 9   ETRSPIDLTKCGI----------CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           E  S +D+ +                  +  +   AF F    V   D        + LK
Sbjct: 298 EKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTV-YIDVFQ----TEDLK 352

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E  E  D     H    +  V  +   ++    ++I T V+A       +   +   LK 
Sbjct: 353 EIFEKEDFEFTTHEIK-DFLVRLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLK- 409

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                   K L       E         K        +  +Y         ++ ++L   
Sbjct: 410 --------KYLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICSRCVYLFDLKEKLMNF 461

Query: 179 ----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  L  + +++   G+ +D  +   L+Q +D    ++  ++      
Sbjct: 462 IEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEAGY 521

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L  +LF +  L +   T+   +T   VL            +   R   ++
Sbjct: 522 Q-FNVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDIVSDIIEYRQ-LTK 579

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                ++  +  M+ + R+    + +  + TGR S      QN+P               
Sbjct: 580 LKSTYIDGFLPLMDENNRVHSNFKQMV-TATGRISSTEPNLQNIPIREEFGR-------- 630

Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                             +R   I    +G  +V AD + IE RVLA ++G++  +++F 
Sbjct: 631 -----------------QIRRAFIPRSRDGY-IVSADYSQIELRVLAHVSGDEKLIESFM 672

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
             ED+++ T +  F V   +VT + R   K +                    G++    +
Sbjct: 673 NNEDIHLRTASEVFKVPMEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS 718

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                          +        +     + +++  V +   +
Sbjct: 719 ------------------------------RDLKISRKEAKEYINNYFERYKGVKDYIEK 748

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           + +  ++                          N  +     R     ++ +      T 
Sbjct: 749 IVRFAKE--------------------------NGYVTTIMNRRRYIPEINSRNF---TQ 779

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP 637
             Q  R            +Q  + DI+   M+              ++L VHDE+V +T 
Sbjct: 780 RSQAERLAMNAP------IQGSAADIIKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTY 833

Query: 638 DTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
             +      +    M +       +PL  E      +
Sbjct: 834 KDEVDIIKKILKENMENVVQ--LKVPLVVEIGVGPNW 868


>gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI]
 gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelotomaculum thermopropionicum SI]
          Length = 751

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 118/700 (16%), Positives = 208/700 (29%), Gaps = 130/700 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-DHPVELWDCVH--------DPVMPQ 55
             D ET         G+  Y +   ++  +               H           +  
Sbjct: 140 AFDTETT--------GVDVYQDV--IVGVSLTLPRAGYHVYIPVAHNNAGPQLRRSYVLN 189

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAV 112
            LK  L +  V  V HN+ F+  +L     + +       T++  +         ALK +
Sbjct: 190 GLKRYLTDPTVGKVLHNAKFDIHMLLRH-GMRMRGLA-HDTMIAMKILNENEPSVALKNL 247

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                       E       F K                    +   Y   D  +T E++
Sbjct: 248 ATRYGKFFGFDGESHTFEDLFGKA-----------CFADVPLDMALIYAAKDTHLTWELY 296

Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           K                   E  L  +   +   G+ VD A A    + +  E  ++++ 
Sbjct: 297 KWQMEHLTKREDLLKLYRELENPLVDICVEMEQTGFAVDTAFAQEYGEELKGELAEVEKT 356

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           L +    +        +L   L+   GL       +T  + L   K   P    +   R 
Sbjct: 357 LVAHFGEINF--NSPAQLAEVLYDRLGLPQG-KERSTDVKTLKGLKGRHPGIEPLLKYR- 412

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++     +  L   + +DGR+ G+     A+ TGR++      QNLP  +        
Sbjct: 413 ELTKLLGTYVEALPHQLKADGRIHGSFNQ-VATVTGRFASREPNLQNLPPRA-------- 463

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                  R  ++A +G  L+  D + IE R+LA M+G+    + 
Sbjct: 464 -----------------------RRLIVAPKGWLLLGIDFSQIEPRILAHMSGDPHFREP 500

Query: 402 FETGEDLYVTTYARSFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +  GEDLY T  AR F V  ++       R + K+  LA+ Y        +      L +
Sbjct: 501 YLKGEDLYSTLAARVFKVPLSECGDGSKYRKMMKIGLLAVMYGTSMFTLSE-----QLGI 555

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +            +E+ D   F +   E   ++       G           ++      
Sbjct: 556 SVEEAHRFIEGFYDEYPDVYAFIKDTWEFVKKNEYVATLYGRK---------RRFPGHR- 605

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 QA        K   A     VPL +                    +D+      
Sbjct: 606 -----EQAIVYDQLAAKICKALGTERVPLDFWSNKGIP-------------KDLKRKFGA 647

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCE 635
           +     ++ R            +Q  + DI+   ++N  +     G+ I  TVHDE +  
Sbjct: 648 VKGEVERVRRMAVNAR------IQGTAADIMKRALLNLYEYTRARGWKINGTVHDEALLL 701

Query: 636 TPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             DT        L   M         +P+K +     R+ 
Sbjct: 702 VRDTITLAEVEELEACMVRAAE--LEVPVKVDTEIMARWG 739


>gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 899

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 115/675 (17%), Positives = 207/675 (30%), Gaps = 154/675 (22%)

Query: 30  VILFAFGFDDHPVELWDCVHDP----VMPQVLKE-----ALENTDVTIVAHNSYFERTVL 80
           ++       D         HD      +P+          L +  V    H    +  VL
Sbjct: 344 LVGLGIALPDGRTAYVPLRHDVLGSVQVPEARFAHVMGGLLADPAVKKGGH----DLKVL 399

Query: 81  KACFNLDIPI---HRWICTLVLARSNGLP---SALKAVG-EALKLSSQKM---EEGKE-- 128
                  + +          +L+          AL  +  E L L    +    EGK+  
Sbjct: 400 SLLLG-GMKLTLQGAHDDVELLSYLLNPSRREHALPDLSRERLGLELPALPATAEGKKGR 458

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
            +      E       R     R A RL+ E     +                E  L  +
Sbjct: 459 PLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALAR---------DMELPLLPI 509

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +  +G  +D A+  TL+  VD E     + + +L      +     +L   L+ +  
Sbjct: 510 LARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQ-EFNVGSNPQLAQVLYEKLQ 568

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +    +   +T Q VL    +  P    +   R   S+     L+TL   +  DGR+ 
Sbjct: 569 LPILKKGKTGPSTDQEVLEKLAEQHPLPGAILEYR-SLSKLKSTYLDTLPGLVAKDGRIH 627

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T     A+ TGR S      QN+P  +    E                         +R
Sbjct: 628 TTYHQA-ATATGRLSSSDPNLQNIPVRTELGRE-------------------------IR 661

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              +A  G +LV AD + +E R+LA +A +   L AF+  ED++  T A  F V P +V 
Sbjct: 662 RAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVD 721

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           +DQR + K +                    GL+ +  +  +                   
Sbjct: 722 RDQRRVAKTVNF--------------GIAYGLSPHGLSTRLSI----------------- 750

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                               + + +  +++ +      L    E+  + G          
Sbjct: 751 -------------SVEEARDIIERYFTRYAGIRRY---LEDTVERARKTGYVETM----- 789

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                              GR  +  D+ +    +     +               +Q  
Sbjct: 790 ------------------FGRRRLMADLNSKNRAVAQAAER---------AAINMPIQGT 822

Query: 606 SRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658
           + D++ + M+   +A         ++L VHDE++ E P+ +      L    M+S  +  
Sbjct: 823 AADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQCMSSVAT-- 880

Query: 659 KGLPLKAEGYESKRY 673
             +PLK +    K +
Sbjct: 881 LKVPLKVDVGAGKTW 895


>gi|313637951|gb|EFS03259.1| DNA polymerase I [Listeria seeligeri FSL S4-171]
          Length = 567

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 81/657 (12%), Positives = 183/657 (27%), Gaps = 134/657 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
                       +            KE +E+    +V     ++     V        + 
Sbjct: 25  IGLTIHSDKGTYFFTKETAENSPAFKEWVESDASKVV-----YDAKKTMVAMHRLGYTVS 79

Query: 90  IHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNK 147
                  ++ +       ++      A++    ++E  + +  +  K     E +   + 
Sbjct: 80  GIT-FDIMLASYLLNPSDSIADFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESIVAPHL 138

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
                A  +  +    D+    ++      +   E  L ++   +  +G  VD      +
Sbjct: 139 ARKAVAIAVLEKRLLDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTKRLEDM 194

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
              +      L++ + SL      +    ++L   LF + GL     T+   +T   VL 
Sbjct: 195 KVELAGRLKTLEESIHSLAG-EEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLE 253

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
           S         ++   R    +     +  L++  + +     T      ++TGR S    
Sbjct: 254 SLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDP 312

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383
             QN+P       +                         +R   + S  G K+  AD + 
Sbjct: 313 NLQNIPIRLEEGRK-------------------------IRQVFVPSQPGWKIFSADYSQ 347

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +        
Sbjct: 348 VELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN------- 400

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++    +                                        
Sbjct: 401 -------FGIVYGISDYGLSQ------------------------------NLGITRKDA 423

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +     +   +  V E   ++ +  ++  +     I                        
Sbjct: 424 KDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYXETILH---------------------- 459

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617
             R     ++ +             R            +Q  + DI+ + M+        
Sbjct: 460 --RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMSDRLKS 508

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            K    ++L VHDE++ E P+ +      +   +M +       +PLK +      +
Sbjct: 509 EKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 563


>gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63]
 gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
 gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08]
 gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07]
          Length = 882

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 99/664 (14%), Positives = 186/664 (28%), Gaps = 142/664 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +I      D   +   D          L     N ++    +N   +   LK   N+++ 
Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLKPY-NINLE 391

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            + +    +        S+      A           K L  +    E       ++K  
Sbjct: 392 -NMYFDITISEYLIDSTSSTSYDCSA--------IAMKYLSKKVKSKEELLGKGVKSKNY 442

Query: 150 HREAWRLFGEYCKGDV--------TVTREIFKRLEPLSSKE--QELWYLDQTINDRGYCV 199
               +    EY    +         + R +               L  +   +   G  V
Sbjct: 443 EDLEFEDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKV 502

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256
           D ++   L+         L++E+  L+     +    ++L   LF +  L +   T+   
Sbjct: 503 DKSILDELSVEFKEIIATLEKEIYELSG-EPFNINSPKQLGVILFEKLELPIIKKTKTGY 561

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL   +   P   ++   R    +     +  L+  +N +     +      + T
Sbjct: 562 STNADVLEKLRDKHPIIDKITEYRQIV-KLNSTYVEGLLNIINPESNRIHSSFNQTITTT 620

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P       +                         +R   IA +  KL
Sbjct: 621 GRISSTEPNLQNIPIKMEMGRK-------------------------IRKVFIADDNCKL 655

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + +E RVLA M+ ++  ++AF+  ED++  T ++ FNV    VT + R   K + 
Sbjct: 656 VDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVN 715

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y               LN+          S   ++   + F     E   E     
Sbjct: 716 FGIIYGKS-----DFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYA- 769

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                                                     I  +RR +P +       
Sbjct: 770 ----------------------------------------VTILNRRRYIPEIKSSNFME 789

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                               R  +N                    +Q  + DI+   M+N
Sbjct: 790 RNR---------------GKRFAMNA------------------PIQGSAADIIKIAMIN 816

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
             K          ++L VHDE++ E  D +      +    M +       + L  +   
Sbjct: 817 VHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAV--NIDVHLDVDLNV 874

Query: 670 SKRY 673
              +
Sbjct: 875 GSSW 878


>gi|81429016|ref|YP_396016.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610658|emb|CAI55709.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei
           23K]
          Length = 886

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 98/690 (14%), Positives = 201/690 (29%), Gaps = 135/690 (19%)

Query: 3   TLFID-FETRSPIDLTKC-GICKYAED---VCVILFAFGFDDHPVELWDCVHDPVMPQV- 56
            L +D  ET   I      G+    ++     +I F  G  DH    W    D  +    
Sbjct: 308 VLTLDNLETVQAIKTPVAFGVEMLTDNYHTADLIGFYIGAPDH----WYVSDDVALLAEP 363

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            LK+ LE+               V      + +        L+ +      +    +G  
Sbjct: 364 VLKDWLEDASHPKAVFGVKR-TQVAANRLGVHLAGVD-FDLLLASYLLNTTNNSNDLGTV 421

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             L   +  +  E +      +            H         + +  +    +  ++ 
Sbjct: 422 ANLHEYQNVQTDEAV-YGKGAKRAVPTEPALLYQHLVQKAAAIYHLQPQLEEQLKEHQQF 480

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           +  +  E  L  +   +   G  VD +    +          L++++ +       +   
Sbjct: 481 DLFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEAG-ETFNINS 539

Query: 236 LEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++L   LF + GL +   T+   +T   VL   +K  P    + + R   ++     + 
Sbjct: 540 PKQLGVILFEKMGLPVVKKTKTGYSTAVDVLEQLRKDAPIVQTILDYRQ-IAKIQSTYVE 598

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L+++++ D ++         ++TGR S      QN+P       +              
Sbjct: 599 GLLKSIHQDNKVHTRYLQ-TLTQTGRLSSVDPNLQNIPVRLAEGRK-------------- 643

Query: 353 DPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                      +R   + S    ++  +D + IE RVLA ++G+    +AF+   D++  
Sbjct: 644 -----------IRQAFVPSHPDWQMFASDYSQIELRVLAHISGDANMQEAFKEDRDIHAN 692

Query: 412 TYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           T  + F +    +VT D R   K                      G++    +  +    
Sbjct: 693 TAMKIFGLNSADEVTPDMRRQAKATNF--------------GIVYGISDYGLSQNI---- 734

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                            +R   A+ +++  V +   ++    ++
Sbjct: 735 --------------------------GISRQEAKRFIDAYFEQYPGVQQFMVDI---VKK 765

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             E G                              R     D+               R 
Sbjct: 766 AREEGYVETL-----------------------FHRRRYLPDIHAKNF---NLRSFAERT 799

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+   +          ++L VHDE++ E P  +    
Sbjct: 800 AMNTP------IQGSAADIIKVAMILMQQELKKANLQARMLLQVHDELIFEAPTEEIPIL 853

Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             L   +M S    A  +PLK E      +
Sbjct: 854 QKLVPSVMDSAVKLA--VPLKVESGFGPTW 881


>gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 876

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 97/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + +      +            F        +     D +    L  
Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
 gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909]
          Length = 878

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 92/662 (13%), Positives = 180/662 (27%), Gaps = 132/662 (19%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               ++  A   +D               +     L +  +     +    R  L     
Sbjct: 331 HHANILGIAV-VNDEESYYVPFELAKQ-SEAFMTFLADEKIAKDIFDLKRSRVALMWQ-G 387

Query: 86  LDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
            D+        L+           +  K V  +        +E       + KG      
Sbjct: 388 FDLRGVA-FDLLLATYIINPTNVSNEFKKVAMSYDYDDVLYDE-----EVYGKGAKRAIA 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            +     H           K       +   +L      E  L  +   +   G  +D+ 
Sbjct: 442 EESQIARHSIDIATAVLKLKETALEQLKEQDQLTLFEEMEMPLADVLAEMEFNGMALDLK 501

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + Q +    T L+ E+         +    ++L   LF +  L +   T+   +T 
Sbjct: 502 TLDEMGQDLKGRITALENEIYEHAGMS-FNINSPKQLGEVLFDKLSLPVIKKTKTGYSTN 560

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL       P    +   R   ++     +  L +A  SDG++         ++TGR 
Sbjct: 561 ADVLEKLSDAHPIIKSIMEYR-TLTKLYSTYIEGLKKACYSDGKVHTIFNQA-LTQTGRL 618

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P                                 +R   +   EG  ++ 
Sbjct: 619 SSIEPNLQNIPIRLEEGR-------------------------LIRKAFVPSEEGWVILG 653

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA ++  +  ++AF+ GED++  T    F V+  ++T D R   K +   
Sbjct: 654 ADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAIN-- 711

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++                                  +     
Sbjct: 712 ------------FGIIYGMS------------------------------AFGLSENLNI 729

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                ++    + + +S +++         +    +G A                     
Sbjct: 730 TQKEAKKYIDHYLETYSGINQYM---EDTVKDAKFHGYATTLFN---------------- 770

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R     ++      L        R            +Q  + DI+ + M++  
Sbjct: 771 -------RRRYIPELSQKNYALRQF---GERTAMNAP------IQGTAADIIKKAMIDVA 814

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
            A         ++L VHDE++ E P  +      L    M         +PLKA+     
Sbjct: 815 NAMKEKQVKSRLLLQVHDELIFEVPQEELDLMIELVTKTMEDVVK--LQVPLKADYSYGP 872

Query: 672 RY 673
            +
Sbjct: 873 TW 874


>gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
 gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076]
          Length = 865

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 104/665 (15%), Positives = 186/665 (27%), Gaps = 171/665 (25%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
                               +   LK  LE+  V  VA +       L     ++     
Sbjct: 346 IGLARKRGEACAV----TSELIVELKPWLEDAAVVKVACDVKSAVLQLAR-LGIEARGFG 400

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
               ++                                               N+ + R 
Sbjct: 401 -HDVMIYGFLLDADPG--------------------------------GCGLENQAHRRL 427

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVA 202
             +L G   +    +T E++++L P              E  L  +   +   G  +D A
Sbjct: 428 DLKLGGA-AEQHADITLELYEQLAPAIDGRGLRKLYDEIELPLTRVLARMERTGIRIDGA 486

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTET 257
               L+ +++ + + L  E+ +L      +    ++L   LF +  L          T +
Sbjct: 487 ELKRLSVLMESQISGLTAEIHALAG-KPFNISSPQQLGKVLFEDLNLPAPVKYGKGKTIS 545

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRT 316
           T   VL           +V   R   ++     ++ L   ++   GRL  +    GA+ T
Sbjct: 546 TAADVLDELAAEHEIVRKVLEYRQ-LTKLKGTYVDALPALIDPATGRLHTSFNQTGAA-T 603

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +    E                         +R+  +  +G KL
Sbjct: 604 GRLSSSNPNLQNIPIRTSLGRE-------------------------IRAAFVPRDGWKL 638

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +VAD + IE R+LA M+G++  ++AF  GED++  T A    V P  VT + R   K + 
Sbjct: 639 LVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPLMVTPEARRDAKAVN 698

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    A                                 
Sbjct: 699 F--------------GIVYGISAFGLAAQ------------------------------L 714

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  ER  K +  ++  V     E      +T                         
Sbjct: 715 GIGRAEAERYIKNYFARYVGVKRFIEETIAEVRKT------------------------- 749

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
             +     GR     ++               R          + +Q  + D++   M+ 
Sbjct: 750 -GVTKTLFGRERPIPEINGRNP---NARGFAERTA------VNSPLQGTAADLIKLAMVR 799

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYE 669
              A         ++L VHDE+V E P  +    S  +   M         +PL  +   
Sbjct: 800 IDAALAAGGFQAAMLLQVHDELVFECPPEELDEVSRMVKREMEGACE--LKVPLVVDVGS 857

Query: 670 SKRYR 674
              +R
Sbjct: 858 GDNWR 862


>gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82]
          Length = 975

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 176/452 (38%), Positives = 252/452 (55%), Gaps = 15/452 (3%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 4   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 62

Query: 62  ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
              +  +  HNS+F+RTVL+     L  P+ RW  T+V A ++GLP +L  + E L +  
Sbjct: 63  AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 122

Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            K   +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL  
Sbjct: 123 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 182

Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            + +  EL  W+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++  
Sbjct: 183 WNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 242

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+  +T +R ++    L     ++   R +AS ++  K   L+
Sbjct: 243 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRQQASTTSTSKYKALM 301

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353
           + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L         
Sbjct: 302 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 361

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDL 408
            + +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF         DL
Sbjct: 362 DNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDL 421

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
           Y   YA+++ +   +VTKDQR IGKV+ELA  
Sbjct: 422 YKLAYAKAYGIEVERVTKDQRQIGKVLELACI 453



 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 131/267 (49%), Gaps = 11/267 (4%)

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
               +  P      +   G ++    GY GG  AF   A    L+L+  A+    N   +
Sbjct: 714 YDIAHAGPRNRFTIKTDSGHLIVHNCGYGGGVSAFITFALVYSLDLDELANAALPNIPRD 773

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
              +A+++     +    + + +     AC+ +K+ WR+ H    + W EL +     I 
Sbjct: 774 VIREAKSWYYESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVRTAIA 832

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTTRQLT 588
             +  +         + +++D   L + LPSGR++ Y        N +Y+  N+ +R+  
Sbjct: 833 TPQKTL-----YCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQ 887

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
           R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDEI+ E PD+ +++A  + 
Sbjct: 888 RLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVS 947

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRYRK 675
            L+ + P WA  +PL A G+ES RYRK
Sbjct: 948 QLLATVPDWATSIPLNAGGFESYRYRK 974


>gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 893

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 92/656 (14%), Positives = 188/656 (28%), Gaps = 129/656 (19%)

Query: 33  FAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
             F   +  V  +      ++  + LK  +EN  +     N   +  VL     L +   
Sbjct: 348 IGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQL-VLFKRLGLALKGV 406

Query: 92  RWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                +++A      +    L  + +   +     E+     A+F        L      
Sbjct: 407 N-FDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGAKFTVPTDTNLLLSHVAH 465

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                ++L             +  ++    +  E  L ++   +  +G  V+        
Sbjct: 466 KADGLFKLEKP-----AFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYLRNKG 520

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
           + +      +   +  +  G   +    ++L   LF + GL +   T+   +T   VL  
Sbjct: 521 KDLSERIADIQSAIY-IEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDVLEK 579

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                P    +   R   ++     ++ L+  +        T      ++TGR S     
Sbjct: 580 LAPQAPIVDHILQYRQ-LAKLKSTYIDGLLSVIYPKDSKIHTRFLQTLTQTGRLSSVDPN 638

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGI 384
            QN+P  S                              +R+  + S    ++  AD + I
Sbjct: 639 LQNIPMRSEEGR-------------------------LIRTAFVPSHPNWQIFGADYSQI 673

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA + G++   KAF  GED++  T    F +A   V    +               
Sbjct: 674 ELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAV-------- 725

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G++    A+                                       +
Sbjct: 726 -----NFGIVYGISDYGLAN------------------------------NLGISRAEAK 750

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           R    + Q+  ++ E  N +     +                          +  +   +
Sbjct: 751 RFIDTYFQEFPQIHEWMNTIKTFAHE--------------------------HGYVETIA 784

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620
            R     D+               R            +Q  + DI+   M+   +A    
Sbjct: 785 HRRRYLPDIQAKNF---NLRSFAERTAMNSP------IQGSAADIIKIAMIKVNEALREN 835

Query: 621 --GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                ++L VHDE++ ETP  +    + +  ++M S    A  +PLK + +    +
Sbjct: 836 NLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSAV--ALDVPLKVDAHHGDTW 889


>gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis
           101-4-CHN]
          Length = 887

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 96/657 (14%), Positives = 201/657 (30%), Gaps = 142/657 (21%)

Query: 39  DHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                 W    DP +     +KE LEN  +     N+      L     +++  +     
Sbjct: 347 GSQGHWW-VSQDPELLSAPEIKELLENPKIKKDTFNAKAHYVALHRQ-GIELHGNG-FDF 403

Query: 97  LVLARSNGLPSALKAVGE------ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
           L+++           +G+        ++ S +   GK          +    +   K   
Sbjct: 404 LLVSYLLNTNDNSNDLGQLAHEHNYYQVQSDEEVYGKGKSRHLPDDRSVFFTHLVQKGMA 463

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLN 208
            E  +           +T ++ +  +       E+ L ++   +   G  VD      + 
Sbjct: 464 IEQLKH---------PLTDQLHENEQWPLYTDIERPLSHVLAKMEIAGVHVDATTLKEMG 514

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
             +     +L+Q + +       +    ++L T LF +  L +   T+   +T   VL  
Sbjct: 515 SKLKERLAELEQAIYNEAG-EEFNINSTKQLGTILFEKMKLPVIKKTKTGYSTSVEVLEK 573

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +   P    +   R   S+     +  L++ ++S  +   T      ++TGR S     
Sbjct: 574 LQGRAPIIDNILVYRQ-ISKIQSTYITGLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPN 632

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGI 384
            QN+P       +                         +R     S  G K+  +D + +
Sbjct: 633 LQNIPVRLEEGRK-------------------------IRRAFKPSQPGWKIFSSDYSQV 667

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAIGKVMELALGYQG 443
           E RVLA + G++   + F  G+D++ +T  R F+ +   +VT + R   K +   + Y  
Sbjct: 668 ELRVLAHVTGDRNLQQDFIDGKDIHESTARRIFHLLPGEKVTPNMRRQAKAVNFGIVYGI 727

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                     +  +++          S  +E+   + +   + +   +    +       
Sbjct: 728 S-----DYGLSQNIHVTRKQAHEFIQSYFKEFPGVQEYIENIVKLAKKQGYVETLT---- 778

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                                                 +RR +P +  K           
Sbjct: 779 -------------------------------------HRRRYLPEINSKNFSRRSF---- 797

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---- 619
                        R+ +NT                   +Q  + DI+   M+N  +    
Sbjct: 798 -----------AERTAMNT------------------PIQGSAADIIKIAMINMNEQLQK 828

Query: 620 --AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L +HDE++ E P+ +      L   +M S       +PLK E      +
Sbjct: 829 AGLKAKMLLQIHDELIFEAPEEEIDQLRELVPKVMDSAVK--LDVPLKVESKVGDTW 883


>gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410]
 gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876]
 gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101]
 gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899]
 gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160]
 gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015]
 gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809]
 gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           MN8]
 gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00]
          Length = 876

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 97/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + +      +            F        +     D +    L  
Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL]
 gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL]
          Length = 850

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/629 (14%), Positives = 186/629 (29%), Gaps = 144/629 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKA--CFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++E L++  V IV     ++   +           I      ++ +       +      
Sbjct: 350 IEEILKSESVKIV-----YDLKNMFHELYLENTDNIRNCEDVMIASYVLDSTRS------ 398

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +L +  M      +    K +    +    +     +          D+   + ++  
Sbjct: 399 SYELETLFMSYLNTDLEAVKKDKKVTSVILLERLWDELS-------SLIDLNSCQFVYT- 450

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                + E+ L  +   +   G+ VD        + ++ +   L++++  +      +  
Sbjct: 451 -----NIERPLIPILYEMEKAGFKVDRDALLQYTKEIESKILNLEKQIYQIAG-EWFNIN 504

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF +  L +   T+   +T   VL            + + RM  ++      
Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMY-TKILTTYC 563

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++A+N       T      + TGR +      QN+P                     
Sbjct: 564 QGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGR-------------- 609

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   I  EG  L+ AD + IE R+LA ++ ++  + AF+   D++  
Sbjct: 610 -----------LIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQ 658

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT + R+  K +   +                G++             
Sbjct: 659 TAAEIFGVDIDDVTPEMRSQAKAVNFGIV--------------YGISD------------ 692

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                A +              + +++ +V E    L    +  
Sbjct: 693 ------------------YGLARDIKISRKEAAEFINRYFERYPKVKEY---LDNIVKFA 731

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
            ENG  +                           R    +D+ +       T     R  
Sbjct: 732 RENGYVLTLFN-----------------------RKRYIKDINSTN---RNTRSYAERIA 765

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+   M+   +          I+L VHDE++ E P  ++    
Sbjct: 766 MNSP------IQGSAADIMKLAMIKVYQKLKENNLKAKIILQVHDELLIEAPYEEKDIVK 819

Query: 646 MLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
            +    M +    A  +PL  E  E   +
Sbjct: 820 RIVKTEMENAV--ALKVPLVVEVKEGLNW 846


>gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
 gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427]
          Length = 882

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 101/689 (14%), Positives = 200/689 (29%), Gaps = 142/689 (20%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL--WDCVHDPVMPQVLKEALENT 64
           DFE        +     Y  +   +          V    WD         VL E LE+ 
Sbjct: 310 DFEKFLQESKDQMVGIAYFVEDNTLGLGVAI-GERVGYSEWDLTDTEA-KAVLIEFLESA 367

Query: 65  DVTIVAH---NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
               + H   N   E   LK    L+        T + A      +    + E  +L   
Sbjct: 368 TYQKIVHDSKNFKHEL--LKVGLGLN---GVCFDTFIAAYLLHPTNKSYDLAELEELFIN 422

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-- 179
           K    + L+         +      +    E     G+  +  ++VT  + + L+  +  
Sbjct: 423 K----QSLMNLENLLGKGKSQKTWLQLEDEERINNLGKRSQLALSVTEAMKEALQEQNMT 478

Query: 180 ----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
                 E  L  +   +   G  VD     +  + +      L   +         +   
Sbjct: 479 RLFYDIEMPLIDVLFDMEVEGIKVDPEGLRSYGEELQGLLDTLTTSIYEAAG-ESFNINS 537

Query: 236 LEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++L   LF + G+     T+   +T   VL + K   P   Q+   R   ++     ++
Sbjct: 538 PKQLGVILFEKLGIPCAKKTKTGYSTAAEVLEALKNDYPIVAQILEYRQY-AKLKSTYVD 596

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L+  +    ++  T      + TGR S      QN+P      ++              
Sbjct: 597 GLLNVLTEQNKIHSTFNQ-TITATGRLSSTEPNLQNIPVKFEMGKK-------------- 641

Query: 353 DPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                      +R   + S E    +  D + IE RVLA M+G+   +KAF+   D++  
Sbjct: 642 -----------IRQLFVPSSENHIFLDGDYSQIELRVLAHMSGDPTLIKAFKENIDIHAL 690

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T ++ F+V    VT  QR+  K +   +                G++             
Sbjct: 691 TASQVFHVPFEDVTSMQRSNAKAVNFGIV--------------YGIS------------- 723

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                + +        ++    + +K+  +    +E+     Q 
Sbjct: 724 -----------------AFALSEDLKISQKEAQKYIDGYFEKYPCIKAYLDEIIDFAMQ- 765

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                    N  +     R     ++  +   +    ++     
Sbjct: 766 -------------------------NGYVETLYHRKREIPEILASNYNMREFGKR----- 795

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  S DI+   M+   +          ++LTVHDE++ +    +     
Sbjct: 796 ----VAMNTPIQGTSADIIKIAMIRVHQKLKEHSLKSKLILTVHDELLIDAHKDEVEIVK 851

Query: 646 M-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
             L   M         +PL  + ++   +
Sbjct: 852 KLLKEEMEHAAD--LSVPLVVDVHQGANW 878


>gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of
           Bemisia tabaci]
          Length = 939

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 91/695 (13%), Positives = 190/695 (27%), Gaps = 166/695 (23%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKEALENTD 65
           T+   D+   G+  +  D  ++  AF +                      +L+   + TD
Sbjct: 363 TKWAFDIATTGMDPHLAD--LLGIAFAYQPGTAYYIALPPNKAAAQPFLALLQPLFQRTD 420

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE-ALKLSSQK 122
           V  V HN      V++    L I       T++        +   L  + E  L      
Sbjct: 421 VLKVGHNLKNALIVMQRH-GLSIAP-PLFDTMIAHGLVAADMDHHLTTLSEQYLNH---- 474

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                     + K                        Y      +   I+ ++     + 
Sbjct: 475 --------RSYLKPPNRAEK----------ESEGIKNYAGEGADLVLHIYPKIAQALREH 516

Query: 183 ----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                       L  +   +   G  +D+    TL   ++     L +++ +L      +
Sbjct: 517 KVATLFYRVEMPLVQVLVAMELAGVSIDLPFLATLGSEMEPTTKALKEKIYTL-AQTTFN 575

Query: 233 SRCLEKLKTWLFLETGL-HLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L   LF +  L      T+     T + +L+   K+ P    +   R    +  
Sbjct: 576 IDSPKQLGVVLFEKLALHTKPMKTKGGQYATGEAILAKLSKVHPIVPLIMEYR-TWQKLR 634

Query: 288 VLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++ L   ++  D RL  T      + TGR S      Q +P  + +   L       
Sbjct: 635 STYVDALPTLLHPIDQRLHATYHQTVVT-TGRLSATGPNLQQIPIRTPTGRAL------- 686

Query: 347 PTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                             R   I   +G  L  AD + IE R++A  A +   + AF++ 
Sbjct: 687 ------------------RKAFIPHQKGDCLFSADYSQIELRIMAAYAQDTTMIMAFQSD 728

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +D++  T  + F         + R   K+    + Y        +               
Sbjct: 729 QDIHQITAQKLFKTVIVDQ--EMRQKAKIANFGIIYGISPFGLSE--------------- 771

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                         +         + +A+ +    +    ++  
Sbjct: 772 ----------------------------RMEHLSRKEAAELIEAYFEAFPGIKTYIDDSI 803

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
              E                           N  +    GR     D+  +        R
Sbjct: 804 AHAE--------------------------ANGYVRTLLGRKRFLPDLYASNPTTRGVAR 837

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT 639
           +               +Q  + +++   M++        K    +++ VHDE+V   P +
Sbjct: 838 RN---------AINTPIQGSAAEMIKLAMIHIQDWLEKHKLSTKLIIQVHDELVFNVPRS 888

Query: 640 DEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +    +  LM +     + +P+K        +
Sbjct: 889 EIADIQHHIPLLMATALPL-ENVPIKVNWNIGANW 922


>gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
 gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427]
          Length = 876

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 96/687 (13%), Positives = 204/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + +      +            F        +     D +    L  
Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +         +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEVDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513]
 gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514]
 gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561]
 gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513]
          Length = 872

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 91/693 (13%), Positives = 200/693 (28%), Gaps = 152/693 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +        D           +  +   AF F +  V   D        + LKE  
Sbjct: 307 KLIAL------LQDSKSIAFYPLIYEGEIKKIAFSFGNDTV-YIDGFQ----IKDLKEIF 355

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E        H    +  V  +   ++    +++ T ++A       +   +   LK    
Sbjct: 356 EKEKFEFTTHEIK-DFLVKLSYKGIECK-SKYMDTAIMAYLLNPSESNYDLDRVLK---- 409

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--- 178
                K L       E         K        +  +Y         ++ ++L      
Sbjct: 410 -----KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEE 464

Query: 179 -------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  + +++   G+ +D  +   L+Q ++    ++  ++         
Sbjct: 465 MDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQ-F 523

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L  +LF +  L +   T+   +T   VL            +   R   ++   
Sbjct: 524 NVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQ-LTKLKS 582

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             ++  +  M+ + R+    + +  + TGR S      QN+P                  
Sbjct: 583 TYIDGFLPLMDENNRVHSNFKQMV-TSTGRISSTEPNLQNIPIREEFGR----------- 630

Query: 349 SITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R   I   +   +V AD + IE RVLA ++G++  +++F   ED
Sbjct: 631 --------------QIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNED 676

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +++ T +  F V   +VT + R + K +                    G++    +    
Sbjct: 677 IHLRTASEVFKVPMEKVTPEMRRVAKAVNF--------------GIIYGISDYGLS---- 718

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                      +        +     + +++  V E   ++ + 
Sbjct: 719 --------------------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRF 752

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            ++                          N  ++    R     ++ +      T   Q 
Sbjct: 753 AKE--------------------------NGYVITIMNRRRYIPEINSRNF---TQRSQA 783

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDE 641
            R            +Q  + DI+   M+              ++L VHDE+V +T   + 
Sbjct: 784 ERLAMNAP------IQGSAADIIKMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEV 837

Query: 642 FNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
                +    M +       +PL  E      +
Sbjct: 838 EIVKKILKDNMENVVQ--LKVPLVVEIGVGPNW 868


>gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 878

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/662 (13%), Positives = 180/662 (27%), Gaps = 132/662 (19%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               ++  A   +D               +     L +  +     +    R  L     
Sbjct: 331 HHANILGIAV-VNDEESYYVPFELAKQ-SEAFMTFLADEKIAKDIFDLKRSRVALMWQ-G 387

Query: 86  LDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
            D+        L+           +  K V  +        +E       + KG      
Sbjct: 388 FDLRGVA-FDLLLATYIINPTNVSNEFKKVAMSYDYDDVLYDE-----EVYGKGAKRAIA 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            +     H           K       +   +L      E  L  +   +   G  +D+ 
Sbjct: 442 EESQIARHSIDIATAVLKLKETALEQLKEQDQLTLYEEMEMPLADVLAEMEFNGMALDLK 501

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + Q +    T L+ E+         +    ++L   LF +  L +   T+   +T 
Sbjct: 502 TLDEMGQDLKGRITALENEIYEHAGMS-FNINSPKQLGEVLFDKLSLPVIKKTKTGYSTN 560

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL       P    +   R   ++     +  L +A  SDG++         ++TGR 
Sbjct: 561 ADVLEKLSDAHPIIKSIMEYR-TLTKLYSTYIEGLKKACYSDGKVHTIFNQA-LTQTGRL 618

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P                                 +R   +   EG  ++ 
Sbjct: 619 SSIEPNLQNIPIRLEEGR-------------------------LIRKAFVPSEEGWVILG 653

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA ++  +  ++AF+ GED++  T    F V+  ++T D R   K +   
Sbjct: 654 ADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAIN-- 711

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++                                  +     
Sbjct: 712 ------------FGIIYGMS------------------------------AFGLSENLNI 729

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                ++    + + +S +++         +    +G A                     
Sbjct: 730 TQKEAKKYIDHYLKTYSGINQYM---EDTVKDAKFHGYATTLFN---------------- 770

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R     ++      L        R            +Q  + DI+ + M++  
Sbjct: 771 -------RRRYIPELSQKNYALRQF---GERTAMNAP------IQGTAADIIKKAMIDVA 814

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
            A         ++L VHDE++ E P  +      L    M         +PLKA+     
Sbjct: 815 NAMKEKQVKSRLLLQVHDELIFEVPQEELDLMIELVTKTMEDVVK--LQVPLKADYSYGP 872

Query: 672 RY 673
            +
Sbjct: 873 TW 874


>gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1]
          Length = 833

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 94/682 (13%), Positives = 198/682 (29%), Gaps = 146/682 (21%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
             D           +  +   AF F  + V   D        + LKE  E  +     H 
Sbjct: 273 LQDSRNIAFYPLIYEGEIKKIAFSFGSNTV-YIDIFQ----IEDLKEIFEKEEFEFTTHE 327

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
              +  V  +   ++    ++I T ++A       +   +   LK         K L   
Sbjct: 328 IK-DFLVKLSYKGIECK-SKYIDTAIMAYLLNPSESNYDLDRVLK---------KYLKVD 376

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL----------SSKE 182
               E         K        +  +Y         ++ ++L                E
Sbjct: 377 VPSYEEVFGKGRDKKKLEEIREDVLADYICSRCVHLFDLREKLMNFIEEMDMKKLLLEIE 436

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  + +++   G+ +D  +   L+Q +D    ++  ++         +    ++L  +
Sbjct: 437 MPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQ-FNVNSPKQLSEF 495

Query: 243 LFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           LF +  L +   T+   +T   VL            +   R   ++     ++  +  M+
Sbjct: 496 LFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDVVSDIIEYRQ-LTKLKSTYIDGFLPLMD 554

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            + R+    + +  + TGR S      QN+P                             
Sbjct: 555 ENNRVHSNFKQMV-TATGRISSTEPNLQNIPIREEFGR---------------------- 591

Query: 360 ISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R   I   +   +V AD + IE RVLA ++G++  +++F   ED+++ T A  F 
Sbjct: 592 ---QIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFK 648

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V   +VT + R   K +                    G++    +               
Sbjct: 649 VPMEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS--------------- 679

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                           +        +     + +++  V E   ++ +  ++        
Sbjct: 680 ---------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKE-------- 716

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                             N  +     R     ++ +      T   Q  R         
Sbjct: 717 ------------------NGYVTTIMNRRRYIPEINSRNF---TQRSQAERLAMNAP--- 752

Query: 599 ENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASML-YHLM 651
              +Q  + DI+   M+   +          ++L VHDE+V +T   +      +    M
Sbjct: 753 ---IQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVDIVKKILKENM 809

Query: 652 TSNPSWAKGLPLKAEGYESKRY 673
            +       +PL  E      +
Sbjct: 810 ENVIK--LKVPLVVEIGIGPNW 829


>gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1]
          Length = 872

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 91/693 (13%), Positives = 199/693 (28%), Gaps = 152/693 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +        D           +  +   AF F +  V   D        + LKE  
Sbjct: 307 KLIAL------LQDSKSIAFYPLIYEGEIKKIAFSFGNDTV-YIDGFQ----IKDLKEIF 355

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E        H    +  V  +   ++    +++ T ++A       +   +   LK    
Sbjct: 356 EKEKFEFTTHEIK-DFLVKLSYKGIECK-SKYMDTAIMAYLLNPSESNYDLDRVLK---- 409

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--- 178
                K L       E         K        +  +Y         ++ ++L      
Sbjct: 410 -----KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEE 464

Query: 179 -------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  + +++   G+ +D  +   L+Q ++    ++  ++         
Sbjct: 465 MDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQ-F 523

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L  +LF +  L +   T+   +T   VL            +   R   ++   
Sbjct: 524 NVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQ-LTKLKS 582

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             ++  +  M+ + R+    + +  + TGR S      QN+P                  
Sbjct: 583 TYIDGFLPLMDENNRVHSNFKQMV-TSTGRISSTEPNLQNIPIREEFGR----------- 630

Query: 349 SITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R   I   +   +V AD + IE RVLA ++G++  +++F   ED
Sbjct: 631 --------------QIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNED 676

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +++ T +  F V   +VT + R   K +                    G++    +    
Sbjct: 677 IHLRTASEVFKVPMEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS---- 718

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                      +        +     + +++  V E   ++ + 
Sbjct: 719 --------------------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRF 752

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            ++                          N  ++    R     ++ +      T   Q 
Sbjct: 753 AKE--------------------------NGYVITIMNRRRYIPEINSRNF---TQRSQA 783

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDE 641
            R            +Q  + DI+   M+              ++L VHDE+V +T   + 
Sbjct: 784 ERLAMNAP------IQGSAADIIKMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEV 837

Query: 642 FNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
                +    M +       +PL  E      +
Sbjct: 838 EIVKKILKDNMENVVQ--LKVPLVVEIGVGPNW 868


>gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 876

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 98/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + + A    +            F        +     D      L  
Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLEIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGYVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
 gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase
          Length = 543

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 66  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 106

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 107 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 157

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 158 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 216

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 217 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 275

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 276 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 309

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 310 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 369

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 370 RRAAKTINF--------------GVLYGMS------------------------------ 385

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +   + + Q   +V      + +  E+    G             
Sbjct: 386 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 434

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 435 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 470

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 471 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 528

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 529 EVEVGIGEDW 538


>gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
 gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes]
 gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 867

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 92/688 (13%), Positives = 214/688 (31%), Gaps = 150/688 (21%)

Query: 10  TRSPIDLTK---CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66
           T     L K     +  +  D  +   +F   D      +            + L N  +
Sbjct: 302 TYVKNVLGKFDVLSLYPFIYDGKIKAVSFACGDGS-FFVEIDDYDNF-----KLLNNDKL 355

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
           T++ H+   +  V  +   +++   + + T ++        +   +   LK         
Sbjct: 356 TLIGHDLK-DFLVNISYCGIELN-CKILDTAIMTYLLNPSESNYDISRVLK--------- 404

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ--- 183
           K L       +         K       +L  +Y     +   ++  +L     + +   
Sbjct: 405 KYLKEDLQNIDDIVGKGRNKKSYDDIDKKLLVDYMCSAASNLSKLKDKLMSFIKEMEMED 464

Query: 184 -------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                   L  + +++   G+ +D  +  ++++ +D +  K+ +++         +    
Sbjct: 465 LLKNVEIPLIEVLKSMEVYGFTLDKDVLRSISKEIDEKTDKIVKDIYDAAGY-EFNINST 523

Query: 237 EKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L  +LF +  L     T+   +T   VL+          ++   R    +     ++ 
Sbjct: 524 KQLSEFLFDKLNLPAIKKTKTGYSTDMEVLAELIPYNDIVGEIIEYRQ-LMKLKSTYIDG 582

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
            +  M+ + R+  T +   A+ TGR S      QN+P                       
Sbjct: 583 FIPIMDENNRVHSTFKQTVAA-TGRISSTEPNLQNIPVREEFGRR--------------- 626

Query: 354 PDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   ++S E   ++ AD + IE RVLA ++ ++  +++F   ED+++ T
Sbjct: 627 ----------IRKAFVSSYEDGLIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRT 676

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +  F V+  +VT + R   K +   + Y            +  L ++        ++  
Sbjct: 677 ASEVFKVSKEEVTSEMRRRAKAVNFGIVYGIS-----DYGLSKDLKISRKEAKEYIDNYF 731

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
           + ++  +N+   + +   E+                                        
Sbjct: 732 DRYKGVKNYIDSIVKFAKENGYVTTI---------------------------------- 757

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                    +RR +P +  K                        R  +NT          
Sbjct: 758 -------LNRRRYIPEINSKNFNQRSF---------------GERMAMNT---------- 785

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + DI+   M+              ++L VHDE++ +T   +      
Sbjct: 786 --------PIQGSAADIIKMSMVKVYNELKERGLKSRLILQVHDELIIDTHPDEVEIVKE 837

Query: 647 -LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            L  +M +       +PL  +  + K +
Sbjct: 838 LLKSIMENIIK--LKVPLVVDIGQGKNW 863


>gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 63  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 104 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 154

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 155 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 213

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 214 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 272

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 273 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 306

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 367 RRAAKTINF--------------GVLYGMS------------------------------ 382

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +   + + Q   +V      + +  E+    G             
Sbjct: 383 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 431

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 432 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 467

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 468 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 525

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 526 EVEVGIGEDW 535


>gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
 gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345]
          Length = 929

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 91/671 (13%), Positives = 190/671 (28%), Gaps = 174/671 (25%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             V   A    +      +   +    +V++ AL +  V    H++            L 
Sbjct: 406 PQVTSVALSSREGAARAVELKGESG--EVVRRALADPTVPKAVHDAK-----AAMHAGLP 458

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T++                  +L    +                        
Sbjct: 459 LESVE-HDTMLYEYLLDPTY------TTYRLPDVVL-------------RRLNLKLAGTL 498

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGY 197
           P                  +T  +  +L                ++ L  +   +   G 
Sbjct: 499 PEA--------------ADMTHRLTTKLHKLVEDGGLMKVYEDIDRPLVTVLYAMEAAGV 544

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE----- 252
            +D  +   ++  +  +   L +++  L+     +    ++L   LF +  L        
Sbjct: 545 KLDCDVLAEMSTRLQRDADALARKIYGLSGQ-EFNINSPKQLGDVLFNKLNLPKPVKYGK 603

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFL 311
             T +T   VL            V   R   ++     ++ L    ++  GRL  T    
Sbjct: 604 GKTISTAVDVLEGLAGEHEVPKLVLEYRQ-FTKLKSTYVDALPNLCHAGTGRLHTTFAQA 662

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
            A+ TGR S      QN+P  +    E                         +R+  +A 
Sbjct: 663 -ATSTGRLSSVNPNLQNIPIRTELGRE-------------------------IRAAFVAE 696

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           +G  L+ AD + IE R+LA  + ++  + A+    D++  T +  F V P  +  + R  
Sbjct: 697 KGNVLLAADYSQIELRLLAHFSQDRLLVDAYNNDRDIHALTASEVFGVPPMMIDAEHRRR 756

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   +                G++    +  +  ++                     
Sbjct: 757 AKAVNFGIV--------------YGISPFGLSQQLGIDT--------------------- 781

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +R  +++ +++S V E  N + +   +  +                  
Sbjct: 782 ---------KESKRYIESYFERYSGVREWLNSVLEQVRKDEK------------------ 814

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +    GR     D+ +             R  T          Q  + D++ 
Sbjct: 815 --------VSTLFGRIRPIPDIHSRNP---NLRGFAERTATNTPL------QGTAADLIK 857

Query: 612 EGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN-PSWAKGLPL 663
             M+         K    ++L VHDE+V E P  +     +++   M +  P     +PL
Sbjct: 858 LAMIRIHRDLIERKLKTRMLLQVHDELVFEVPQAEVEEVRALVQDRMENVHPE--LTVPL 915

Query: 664 KAEGYESKRYR 674
           K +    K +R
Sbjct: 916 KVDVGVGKNWR 926


>gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198]
 gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198]
          Length = 904

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 108/698 (15%), Positives = 207/698 (29%), Gaps = 166/698 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------PVMPQVL 57
           +  D ET     L             ++ F+F FD          HD       V  +  
Sbjct: 341 IAYDCETNGLDAL----------QARLVGFSFCFDGIHGYYVPISHDYLGVGKQVDTKDA 390

Query: 58  KEALENT-DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           K A+E      IV HN  F+  + KA FNL  P      +++LA      S +      L
Sbjct: 391 KRAIEKIFSHPIVGHNLKFDLMIAKANFNLT-PKREIQDSMLLAYLLDSASMMG-----L 444

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +  +K   GK++IA        + +  + K           EY   D      + +RL+
Sbjct: 445 DILMEKF-FGKKMIAY-------DEVVKKGKTFGDVDLERASEYASEDAVACFCLQERLK 496

Query: 177 PLSSKEQ-------------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                ++                 +   +  +G  +DV     L + +    ++ ++E+ 
Sbjct: 497 EELQAKRCAHLLELAKDLEYPFIEVLADMEYQGIKIDVEWFEALKESLSEALSQKEEEIF 556

Query: 224 SLTYGLVSSSRCLEKLKTWLFLET---GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +       +    ++L   LF +    GL       +T ++ L   K   P    +    
Sbjct: 557 AH-AKQNFNINSPKQLSRVLFDDLKLRGLRRVKGGYSTDEKTLEELKDSHPIIP-ILMEY 614

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +        +++    + ++  +    G + TGR S      QN+P  + + +   
Sbjct: 615 REIFKLKNTYAEPILKLRTKENKIHTSFSQTGTT-TGRLSSRSPNLQNIPVRTEAGK--- 670

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R   IA  GKKL+  D + IE R+LA  + +Q  L 
Sbjct: 671 ----------------------QIRRGFIADAGKKLISVDYSQIELRLLAHFSQDQELLD 708

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF    D+++ T    F     +  K++R I K +   L                     
Sbjct: 709 AFRKDLDIHLRTAQMVFG----EDAKNKRHIAKTINFGLI-------------------- 744

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                         + +       T  +     +      V + 
Sbjct: 745 ------------------------YGMGTRKLSQTLKISNTEAKEYIDRYFASFPTVRQF 780

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +   +        +   RR      +     +  L                    
Sbjct: 781 LRTEEEQILR--RGYAQTLLGHRRYFNFKGVGDFMRSNFLR------------------- 819

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVLTVHDEIVCET 636
                          +    I Q  + D++   M         +G  ++L VHDE++ ++
Sbjct: 820 ---------------EGINAIFQGSAADLMKLSMNKIYQTFQNSGVKMLLQVHDELIFQS 864

Query: 637 P-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           P +  E  A  + ++M         +PL+      + +
Sbjct: 865 PEEEAEDAAREIENIMNGVYE--LRVPLRCNVAIGQNW 900


>gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 755

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 110/705 (15%), Positives = 203/705 (28%), Gaps = 133/705 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LWDCVHD--------PV 52
             + +D ET         G+  Y  +  ++  +F              H           
Sbjct: 138 DEIAVDTETT--------GLDVY--NDVIVGLSFTLPKADYHVYIPVAHKVAGQQLSRRA 187

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSAL 109
           +   LK  L + ++  + HNS ++  +L     L +   +   T++            AL
Sbjct: 188 VLTALKPILTDVNIGKILHNSKYDIHMLIRH-GLRLRGIK-HDTMIAMAVLNENEPTLAL 245

Query: 110 KAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
           K +            K    +EL  +                           Y   D  
Sbjct: 246 KNLATKYGKYFGFEDKSYTYEELFGKTS--------------FAEIPLDAALVYAAKDTH 291

Query: 167 VTREIFKRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           +T E++K                   E  L  +   +   G+ +D+  A      +  E 
Sbjct: 292 LTYELYKWQRQHLNQKESLRLIYDELENPLIDVCVDMEQAGFLIDMDFAMEYKAELKGEI 351

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-LTETTCQRVLSSNKKL--TPQ 272
             L+  L      +        +L   L+ +  L +      +T  + L   +       
Sbjct: 352 AGLEANLTEHFGDINF--NSPLQLAAVLYDKLKLPVIKGKERSTDVKTLKKLRDETKHEG 409

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +   R   ++     +  L + +  DG L G+     A+ TGR++      QNLP  
Sbjct: 410 IDVLLKYR-ELTKLLGTYVEALPQLIKKDGLLHGSFNQ-VATVTGRFASREPNLQNLPPR 467

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                               R  ++A E   ++  D + IE RVLA M
Sbjct: 468 A-------------------------------RRLIVAPEDSLILGVDFSQIEPRVLAHM 496

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA--IGKVMELALGYQGGAKAFQK 450
           +G+    + +  G+DLY T  +R F V+  +   D +   + KV  LA+ Y         
Sbjct: 497 SGDPHLQEPYLKGQDLYSTLASRVFKVSYEECGDDSKYRKMMKVGLLAVMYGTSMWTLAD 556

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                 L +               + D   F     E   ++   +   G          
Sbjct: 557 Q-----LGITVEEANQFIEDFFATYPDVYAFICATHEFAKQNEYVETLYGRK-------- 603

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            ++            +A        +       + VP  Y +  K      LP      +
Sbjct: 604 -RRFPGHR------EKAIVYDKLATEICEILGTKAVPYDYWQYKK-----ELPVILRRQF 651

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           R V               R            +Q  + DI+   ++N    G  I+ TVHD
Sbjct: 652 RAVKGEV----------ERVR---RMAVNARIQGTAADIMKRALINLYNDGRKIIGTVHD 698

Query: 631 EIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E +              +   M  +      +P++ +   S R+ 
Sbjct: 699 EALLIVNKNITLAEVEKIEACMIRSA--NLNVPIRVDTELSTRWG 741


>gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 898

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/680 (12%), Positives = 171/680 (25%), Gaps = 155/680 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVH----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
             +   A                          L+  LE+     + H+       L+  
Sbjct: 336 GELAGLALSVGAGHGRFIPLHCEGGLGEAGLAKLRPWLEDPKRYKLGHDCKASWVALRR- 394

Query: 84  FNLDIPIHRWICTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
             + +       T++ +         P  L  + +              L       +  
Sbjct: 395 KGVALAGI-VGDTMIESFLVEPNKLIPHRLDQLTKEY------------LQRTIPPQKRI 441

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLD 189
                R K   +        +C   V      F  +                   L ++ 
Sbjct: 442 LGSGKRLKRFSQLDAEALAPWCCTQVEAVAAAFVEIRERLDAEGHRDTLEQVSLPLSWVL 501

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  +D      +++       KL++ +  +      +    ++L   LF E  L
Sbjct: 502 GQMELDGVAIDSEDLGKMSEEFGERLAKLEKTIFEIAG-REFNIASSKQLGAVLFDELEL 560

Query: 250 HLEDLTE---TTCQRVLSSNKKL--TPQ--AIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +   T+   +T   VL         P+    +      + ++      + L  A+N D 
Sbjct: 561 PVIKRTKTGYSTNAEVLERLAGKTKHPKHTIAKYLLEHRKLAKLINTYTDVLQAAVNPDS 620

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
                     A  +GR        Q  P  +   +                         
Sbjct: 621 GRIHATFQQTAGVSGRLITTEPDLQRTPIKTPEGKR------------------------ 656

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-- 420
            VR   +   G KL+ AD + IE R+LA  + +   ++AF  G D++  T A+ F V   
Sbjct: 657 -VRQAFVTRPGYKLISADWSQIELRLLAHFSSDAHLVEAFAKGLDVHARTAAQLFEVGGG 715

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           P +V+++QR              G       A+  G                        
Sbjct: 716 PEKVSREQR--------------GVGKLVNFATIYG------------------------ 737

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                 +                +     +   +S V +  +                  
Sbjct: 738 ------QGATALGQILKVPRKQAQAYIDGYFAYYSGVRDWLDGTMAQA------------ 779

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                           +  +    GR     ++ +N            R           
Sbjct: 780 --------------NVDGFVETLLGRRRYIPELSSNNWQDRQA---GERIAANTP----- 817

Query: 601 IVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653
            +Q  + DI    M+         K    ++L +HDE+V E P  +      +    M S
Sbjct: 818 -IQGSAADICKLAMLGIDRQLRAQKLTTRMLLQIHDELVFEAPVAEVEAVVAIVRGQMES 876

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                  +PL  +      +
Sbjct: 877 VVE--LRVPLVVDVGVGDTW 894


>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
 gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
           Of Dna Polymerase I From Thermus Aquaticus
          Length = 539

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 63  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 104 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 154

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 155 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 213

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 214 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 272

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 273 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 306

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 367 RRAAKTINF--------------GVLYGMS------------------------------ 382

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +   + + Q   +V      + +  E+    G             
Sbjct: 383 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 431

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 432 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 467

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 468 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 525

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 526 EVEVGIGEDW 535


>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
           From T. Aquaticus Bound To A PrimerTEMPLATE DNA
          Length = 539

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 62  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 102

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 103 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 153

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 154 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 212

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 213 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 271

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 272 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 305

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 306 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 365

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 366 RRAAKTINF--------------GVLYGMS------------------------------ 381

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +   + + Q   +V      + +  E+    G             
Sbjct: 382 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 430

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 431 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 466

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 467 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 524

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 525 EVEVGIGEDW 534


>gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
           Polymerase I From Thermus Aquaticus
          Length = 538

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 61  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 101

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 102 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 152

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 153 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 211

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 212 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 270

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 271 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 304

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 305 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 364

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 365 RRAAKTINF--------------GVLYGMS------------------------------ 380

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +   + + Q   +V      + +  E+    G             
Sbjct: 381 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 429

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 430 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 465

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 466 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 523

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 524 EVEVGIGEDW 533


>gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
           Large Fragment Of Dna Polymerase I From Thermus
           Aquaticus
 gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I
 gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex
           Wi Abasic Site
 gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna
           Pol In Complex With A Blunt-Ended Dna And Ddatp
 gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Ethylated Dttp
 gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
           I From Thermus Aquaticus In A Closed Ternary Complex
           With Trapped 4'- Methylated Dttp
 gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidines
 gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From
           Thermus Aquaticus Processing C5 Modified Thymidies
          Length = 540

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 63  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 104 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 154

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 155 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 213

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 214 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 272

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 273 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 306

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 367 RRAAKTINF--------------GVLYGMS------------------------------ 382

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +   + + Q   +V      + +  E+    G             
Sbjct: 383 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 431

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 432 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 467

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 468 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 525

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 526 EVEVGIGEDW 535


>gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 893

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 92/656 (14%), Positives = 188/656 (28%), Gaps = 129/656 (19%)

Query: 33  FAFGFDDHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
             F   +  V  +      ++  + LK  +EN  +     N   +  VL     L +   
Sbjct: 348 IGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQL-VLFKRLGLALKGV 406

Query: 92  RWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                +++A      +    L  + +   +     E+     A+F        L      
Sbjct: 407 N-FDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGAKFAVPTDTNLLLSHIAH 465

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                ++L             +  ++    +  E  L ++   +  +G  V+        
Sbjct: 466 KADGLFKLEKP-----AFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYLRNKG 520

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
           + +      +   +  +  G   +    ++L   LF + GL +   T+   +T   VL  
Sbjct: 521 KDLYERIADIQSAIY-IEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDVLEK 579

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                P    +   R   ++     ++ L+  +        T      ++TGR S     
Sbjct: 580 LAPQAPIVDHILQYRQ-LAKLKSTYIDGLLSVIYPKDSKIHTRFLQTLTQTGRLSSVDPN 638

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGI 384
            QN+P  S                              +R+  + S    ++  AD + I
Sbjct: 639 LQNIPMRSEEGR-------------------------LIRTAFVPSHPNWQIFGADYSQI 673

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA + G++   KAF  GED++  T    F +A   V    +               
Sbjct: 674 ELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAV-------- 725

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G++    A+                                       +
Sbjct: 726 -----NFGIVYGISDYGLAN------------------------------NLGISRAEAK 750

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           R    + Q+  ++ E  N +     +                          +  +   +
Sbjct: 751 RFIDTYFQEFPQIHEWMNTIKTFAHE--------------------------HGYVETIA 784

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620
            R     D+               R            +Q  + DI+   M+   +A    
Sbjct: 785 HRRRYLPDIQAKNF---NLRSFAERTAMNSP------IQGSAADIIKIAMIKVNEALRKN 835

Query: 621 --GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                ++L VHDE++ ETP  +    + +  ++M S    A  +PLK + +    +
Sbjct: 836 NLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSAV--ALDVPLKVDAHHGDTW 889


>gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
 gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus']
          Length = 880

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 96/661 (14%), Positives = 200/661 (30%), Gaps = 140/661 (21%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
           A +  +    + F D  V  +   +   +   LKE LE+  +  +  N+      L  C 
Sbjct: 338 ARNGKITEILYAFQDESVYSYKTEN-NKIADALKEILESETIEKLFINAKESSLALL-CA 395

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +++    +   L+        S+L  +            E    +  F + +       
Sbjct: 396 GIEVKNISFE-PLLAYYLLQPSSSLPDL------EEIFSRELDIGMQEFSQDQILAVETI 448

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           +         +   +    D+    E+             L  +   +   G  +D    
Sbjct: 449 KLFKLRDILIKKLKDDSLYDLFKNMEL------------PLIKVLAQMEYNGVKIDKDWL 496

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             L+  ++     + ++   L      +    ++L   LF + GL +   T+   +T   
Sbjct: 497 QQLSDKLEKRLEIITKKAHELAG-EDFNLNSPKQLGEILFEKLGLPVIKRTKTGYSTNAN 555

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL   +   P    + +     ++     +++L   +NS+     T      + TGR S 
Sbjct: 556 VLEKLEGKHPIIP-LISEYRELAKLKSTYIDSLPPLINSETGKIHTSFNQMVTATGRLSS 614

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380
                QN+P  +    E                         +R   I S +   L+  D
Sbjct: 615 TNPNLQNIPIRTEEGRE-------------------------IRKAFIPSSDNMILLAVD 649

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RV A ++G++   +AF +G D++  T +  F V   QV+ + R   KV+     
Sbjct: 650 YSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVINF--- 706

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G++    +  +                                  
Sbjct: 707 -----------GLAYGMSAYGLSQDLDI------------------------------PV 725

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              +     + ++ S V +  +E  Q  ++                              
Sbjct: 726 EEAQDYIDKYFERFSGVKKYMDETIQKVKE--------------------------KGYA 759

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK- 619
               GR     ++ ++            R            VQ  + DI+ + M++    
Sbjct: 760 ETLYGRKRYIPEINSSN---YHRRSFAERSAINTP------VQGTAADIMKKSMLDVYDS 810

Query: 620 -----AGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   +I+L VHDE+V E  + D   A+ ++   M +       +PL  +   ++ +
Sbjct: 811 LKDIDLEINILLQVHDELVFEVANKDLEKAALLIKDKMEAAAE--LDVPLLVDLQIAENW 868

Query: 674 R 674
           R
Sbjct: 869 R 869


>gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 876

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 97/687 (14%), Positives = 205/687 (29%), Gaps = 137/687 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKE 59
            ET S  ++    + +      +            F        +     D +    L  
Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360

Query: 60  ALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            LEN +   V +++   +   V      +DI        ++ +        +  V   + 
Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNIS-FDIMLASYIIDPSRTISDVQSVVS 416

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L  Q     K+ ++ + KG+  +   D     +  +      + K ++    E + ++E 
Sbjct: 417 LYGQSFV--KDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYNQVEL 474

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L+  E  L  +   + + G   DV     + + +  +   L + +         +    +
Sbjct: 475 LADLELSLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAG-EDFNINSPK 533

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L
Sbjct: 534 QLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQ-LSKLQSTYVEGL 592

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + ++ D R+        A +TGR S      QN+P       +                
Sbjct: 593 QKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRK---------------- 635

Query: 355 DPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R      S+   ++ AD + IE RVLA +  ++   +AF  G+D++  T 
Sbjct: 636 ---------IRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATA 686

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            + F V   QV    R   K +   + Y            +  L +         +    
Sbjct: 687 MKVFGVEADQVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLA 741

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +   + +   + ++       +                                     
Sbjct: 742 SFPGVKQYMSDIVKDAKALGFVETL----------------------------------- 766

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   +RR +P +  +                        R+ +NT           
Sbjct: 767 ------LHRRRYIPDITSRNFNLRGF---------------AERTAMNTP---------- 795

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM- 646
                   +Q  + DI+   M+   +          ++L VHDE++ E P ++  + S  
Sbjct: 796 --------IQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEF 847

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +  +M +       +PLK +      +
Sbjct: 848 VEEIMENALQ--LDVPLKVDSSYGATW 872


>gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
 gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073]
          Length = 885

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 93/662 (14%), Positives = 186/662 (28%), Gaps = 148/662 (22%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPV--MPQVLKEALE-NTDVTIVAHNSYFERTVLKAC 83
           +   +     ++D  V +          +   L+  L  N     + H++          
Sbjct: 349 EAAAVAVGLAWEDG-VAVLGTAGIEPAALAGTLEPLLRVNP----IFHDAKRALVWFSNA 403

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECL 142
                       T+V        ++   + E  L+  +  + EG        +      L
Sbjct: 404 GAGVADPGG--DTMVAGYLLNPSASRHDLPELCLEHLNLALVEGDSPQLAAARRAAVIRL 461

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
             R                K  V     +++R+E        L  +   +   G  V++ 
Sbjct: 462 LHRELA------------SKLQVAGMENLYRRVE------LPLTRVLGAMESYGVAVNME 503

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   ++     L + +  L      +    ++L   LF + GL     T+   +T 
Sbjct: 504 TLDLMGIELEGGLAALTEAIYELAG-EEFNLNSPKQLAVILFEKLGLPPVKRTKTGFSTD 562

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL       P A ++   R   ++     ++ L   +N       T      + TGR 
Sbjct: 563 AAVLEELACRHPIAAKLVEYRQ-LAKLKSTYVDGLKPLVNPRTGSLHTSFNQTVTATGRL 621

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P        L                         R   +    G+ L+ 
Sbjct: 622 SSSEPNLQNIPVRLELGRRL-------------------------RKAFVPHGPGRLLLA 656

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA ++G++  + AF  GED++  T A  F V   +VT   R   K +   
Sbjct: 657 ADYSQIELRILAHISGDEAMIAAFRRGEDIHARTAAEVFGVPLGEVTPAMRRSAKAVNF- 715

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    +                               +   
Sbjct: 716 -------------GIVYGISDYGLS------------------------------RDLGI 732

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
             +      + + +++  V      L +   +  + G                       
Sbjct: 733 SRSEAHDYIERYFRRYRGVKAY---LEEIVARARQEGYVTTLL----------------- 772

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                 GR     D+ ++            R            +Q  + DI+   M+   
Sbjct: 773 ------GRRRYLPDLFSSN---RNVRSFGERTAMNTP------IQGTAADIIKMAMVKIF 817

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESK 671
           +          ++L VHDE++ + PD D    + ++   M         +PL+ +     
Sbjct: 818 RLLEAQYPAARMILQVHDELIFDVPDDDLPAVAGLVKDTMEHTLE--LQVPLQVDLKAGP 875

Query: 672 RY 673
            +
Sbjct: 876 NW 877


>gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537]
          Length = 896

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 97/657 (14%), Positives = 193/657 (29%), Gaps = 131/657 (19%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
             F   D     +      ++    +K  +E+  V    +N   +R VL    ++++  +
Sbjct: 351 IGFVIGDEQRGYFASRDFSLLQSPEIKAIIESPTVEKRVYNVKAQR-VLFKRLDIELR-N 408

Query: 92  RWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                L+ A           L  + +   +  Q  E+     A+F          +    
Sbjct: 409 ATFDFLLAAYLLDTTDNNAELATLAQKYDIYLQLDEDIYGKGAKFSVPTD-----EGRVL 463

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            H              V V  +  ++L      E  L  +   +   G  VD      + 
Sbjct: 464 MHIAHKADTLNQLIEPVMVQLKEHEQLALYQDIELPLASVLADMEYTGIRVDQNQLQEMG 523

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
           + +D +   +++ +         +    ++L   LF + GL +   T+   +T   VL  
Sbjct: 524 ESLDAQIVDVEKAIYEEAG-EEFNINSPKQLGILLFEKMGLPVIKRTKTGYSTAVEVLEK 582

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                P    +   R   ++     ++ L+  +        T      ++TGR S     
Sbjct: 583 LADQAPIVAYILQYRQ-LAKLKSTYIDGLLAVVYRQDSKIHTRYLQTLTQTGRLSSVDPN 641

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGI 384
            QN+P  + +                            +R   +      ++  AD + I
Sbjct: 642 LQNIPMRTEAGR-------------------------QIRKAFVPSEPNWQIFGADYSQI 676

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMELALGYQG 443
           E RVLA M G++   +AF   ED++  T    F +      T  QR   K +   + Y  
Sbjct: 677 ELRVLAHMTGDKNLQRAFLNDEDIHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVYGI 736

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                     +  L ++        ++  E++     +    +    E    +       
Sbjct: 737 S-----DFGLSNNLGISRAEAKRFIDTYFEKFPQVHEWMENAKTLAHEQGYVETL----- 786

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                                               A++RR +P ++ K           
Sbjct: 787 ------------------------------------AKRRRYLPDIHAKNFNRRSF---- 806

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617
                        R+ +NT                   +Q  + DI+   M+        
Sbjct: 807 -----------AERTAMNTP------------------IQGSAADIIKIAMIKMNQVLHE 837

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E P ++      +   +M S    A  +PLK E      +
Sbjct: 838 HHLQARMLLQVHDELIFEAPTSEIPELEEIVPQVMDSAV--ALDVPLKVESRHGSNW 892


>gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
 gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B]
          Length = 952

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 101/673 (15%), Positives = 190/673 (28%), Gaps = 147/673 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCV---HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
               +   AF F    V +           + + +K   E+ +   + H++     VL  
Sbjct: 398 RHADLGGLAFAFTPLDVWVVQPTIELSSAKIFEAVKPWFES-NAPKLFHDAKAAIHVLA- 455

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             ++ +   +    +++        +   V              +EL  R    +     
Sbjct: 456 AQHIAVN-GQIDDAMLMDYVLEAHLSHDLV----------RISARELRRRIPTRDEVSGK 504

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTV------TREIFKRLEPLSSKEQELWY-----LDQT 191
             +              +               +     +    +  E        +   
Sbjct: 505 GAKRVGWRETPPEDAARFLAESAAALRAAGSVLKARLLADEKLLRVYEDIERPLVGVLAR 564

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  VD +L    ++ + VE  +L +E  +       +    ++L   LF E GL +
Sbjct: 565 MESAGITVDASLLAQESKELGVEVEQLVEEAHAAAGHP-FNLSSPKQLAQILFAEQGLPV 623

Query: 252 EDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
              T     +T + VLS      P    +  +R   ++     L+ L   ++ DGR+  T
Sbjct: 624 VKKTASGTPSTDEEVLSELALNYPLPKIILEHRR-LTKLKSTYLDKLPTLIDRDGRIHTT 682

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                A  TGR S      QN+P  +                              +R+ 
Sbjct: 683 FGQAVA-VTGRLSSMDPNLQNIPTRTPEGRR-------------------------IRTA 716

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
             A  G  ++ AD + +E R++A ++ +   L AF  GED++ +T A  F+    QVT D
Sbjct: 717 FTARRGWSVIDADYSQVELRIMAHLSQDAGLLSAFSRGEDIHRSTAAEVFHTPLDQVTPD 776

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR + KV+                    G++    A                        
Sbjct: 777 QRRMAKVINF--------------GLIYGMSAFGLAQQ---------------------- 800

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                                 +  K   V     +      +                 
Sbjct: 801 --------MGLDRQVAAAYVDEYFHKFPGVKRYMEKTRAQAAE----------------- 835

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                    +  +    GR L   D+   R  +     +               +Q  + 
Sbjct: 836 ---------DGYVETAFGRRLWVPDITAPRPMVRAAAERAAINA---------PMQGTAA 877

Query: 608 DILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKG 660
           DI+   M+         K    ++L VHDE++ E P  +       L  LM         
Sbjct: 878 DIIKRAMIAVDAWLRTEKLQAKLLLQVHDELIVEAPAEEVELVKQKLPELMAGAAK--LS 935

Query: 661 LPLKAEGYESKRY 673
           +PL A+      +
Sbjct: 936 VPLIADVGVGASW 948


>gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20]
 gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains
           [Leuconostoc citreum KM20]
          Length = 893

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 84/641 (13%), Positives = 186/641 (29%), Gaps = 146/641 (22%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAV 112
            L+  +EN D+     N   +  +L     L +   +    L++A           +  +
Sbjct: 372 ELRAVIENGDIKKNVFNVKAQL-ILFKRLGLTLKGAQ-FDFLLVAYLLDTTDNDNEMSTL 429

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-- 170
            +   +                + E       +      E   L     K D  +  E  
Sbjct: 430 AQRFDV-------------YLTEDEEIYGKGAKYAVPDDEELVLMHLAHKADALIQLEMP 476

Query: 171 ----IFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
               +    +       E  L ++   +  +G+ +D      + + ++     +++ +  
Sbjct: 477 ALSALQSHQQTHLYTEIELPLAHVLAEMEYQGFKIDRKRLQVIGEDLEARIHTIEEAIY- 535

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
           L  G   +    ++L   LF + GL +   T+   +T   VL       P    +   R 
Sbjct: 536 LEAGEKFNLNSPKQLGILLFEKMGLPIIKKTKTGYSTAVDVLEKLASQAPIVEHILQYRQ 595

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++     +  L+  ++++     T      ++TGR S      QN+P  +        
Sbjct: 596 -LAKIKSTYVEGLLAVVHTEDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRTEEGR---- 650

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +R   + S    ++  AD + IE RVLA + G+Q   +
Sbjct: 651 ---------------------QIRRAFVPSQPNWQIFGADYSQIELRVLAHITGDQNMQR 689

Query: 401 AFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           AF  GED++  T    F +          R   K +   +                G++ 
Sbjct: 690 AFLNGEDIHAETARAVFGLDNNAPVDPLMRRTAKAVNFGIV--------------YGISD 735

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              ++                                       +R  + + ++  ++ E
Sbjct: 736 YGLSN------------------------------NLGISRAEAKRFIETYFKEFPQIHE 765

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
              ++     +                             +   + R     ++ +    
Sbjct: 766 WMTKIKAQAHE--------------------------QGYVETIAKRRRYLPEIKSKNF- 798

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIV 633
                    R            +Q  + DI+   M+    A        +I+L VHDE++
Sbjct: 799 --NLRSFAERTAMNSP------IQGSAADIIKIAMIKVADALKDNQLQANILLQVHDELI 850

Query: 634 CETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            E P+ +      +   +M S    A  +P++ + +    +
Sbjct: 851 FEAPEDEIETLRDIVTRVMDSAV--ALDVPMQVDSHYGNTW 889


>gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
 gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365]
          Length = 930

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 110/665 (16%), Positives = 200/665 (30%), Gaps = 155/665 (23%)

Query: 44  LWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWI 94
                H           +P+ L+  L +  V IVAH    +   L      LD P+   +
Sbjct: 382 YLPLAHRYLGVPAQWSALPEALRALLADPAVEIVAH----DVKSLARLLRTLDAPLAGVL 437

Query: 95  -CTLVLARSNGLPSALK-------AVGEALKLSSQKMEEGKELIARFCKG-ETHECLYDR 145
             T++ A   G    L+       AVG  L      +  G+  I                
Sbjct: 438 GDTMLAAYLLGQEGKLEVEDVAGAAVGAELPTRKSLLGSGRSKIGFEAVDISAAAMRAGG 497

Query: 146 NKPNHREAWRLFGEY---CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                  +W   GE      GD  + R++   LE   +             + G  +DV 
Sbjct: 498 AAAAVLASWPRLGEQLEHAGGDGAL-RKLHDELELPLALLLAEI------EEHGITLDVP 550

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED------LTE 256
               L   +  +   +++++  L      +    ++L   LF + GL  +        + 
Sbjct: 551 YLRALADELGGQLAGIERQVYELAG-EEFNLGSPKQLGHMLFEKLGLRADKMRRTKTGSY 609

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASR 315
           +T   +L S  +       +  +R    +     L+ L   +N   GR+  +     A+ 
Sbjct: 610 STNHEILESMAESHAIIPPIIEHR-ELLKLKGTYLDALPPLVNPHTGRIHTSFNQAVAA- 667

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P                                 +R   +A+ GK 
Sbjct: 668 TGRLSSQDPNLQNIPIRKDIGRR-------------------------IRRAFVAAPGKT 702

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           LV  D + IE RV+A ++G++  ++AF+   D++  T A  F++   ++  D+R + K +
Sbjct: 703 LVSIDYSQIELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREEIGPDERRVAKAV 762

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              L Y        +      L ++            E +     +   +  +       
Sbjct: 763 NYGLMYGQS-----EFGLAQSLGISRAQAAHYMERYFERFSTVRAYMDQVVADARAEGAA 817

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                                                      +  +RR +P +  +  +
Sbjct: 818 -----------------------------------------VTLLGRRRPIPDLDARNQQ 836

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                     R                      R            VQ  + DI+   M+
Sbjct: 837 ----------RRRA-----------------AERVAQNTP------VQGSAADIIKLAML 863

Query: 616 NATKAGYD------IVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGY 668
                         ++LTVHDE+V E  P+  E  A  +   M     +A  +PL A   
Sbjct: 864 RVAAHLARGEWDASMLLTVHDELVFEVVPEQAETFAKAMIAEMEGA--YALDVPLVASAG 921

Query: 669 ESKRY 673
            +  +
Sbjct: 922 IADNW 926


>gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
 gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228]
          Length = 903

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 95/663 (14%), Positives = 194/663 (29%), Gaps = 131/663 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81
           Y +D  ++ F F  +   V +     D    + L + LE+ + T + +++   +   V  
Sbjct: 355 YLKD-TILKFGFYTNHQHVVI--NAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSA 408

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               ++I        ++ +       ++  V     +S       K+ I  F KG+ H  
Sbjct: 409 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSV--VSLYGQNYVKDNITIFGKGKKHHI 465

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
             +     H  +           +    E + ++E L   E  L  +   + + G   D+
Sbjct: 466 PEEPILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDI 525

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                +   +  +   L   +   + G   +    ++L   LF    L +   T+   +T
Sbjct: 526 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 584

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    +   R   ++     +  L + ++ D R+        A +TGR
Sbjct: 585 AVDVLEKLQGEHPIIDDILEYRQ-LAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 642

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377
            S      QN+P       +                         +R      S+   ++
Sbjct: 643 LSSIDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 677

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +  ++    AF  G D++  T  + FNV   QV    R   K +  
Sbjct: 678 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 737

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++    +                                  
Sbjct: 738 --------------GIVYGISDYGLSQ------------------------------SLG 753

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +     +      V +  +++    +     G                      
Sbjct: 754 ITRKQAKAFIDDYLASFPGVKQYMSDI---VKDAKAQGYVETLLH--------------- 795

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   R     D+ +             R            +Q  + DI+   M+  
Sbjct: 796 --------RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKF 838

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670
           ++          ++L VHDE++ E P ++  + S  +  +M         +PLK +    
Sbjct: 839 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 896

Query: 671 KRY 673
             +
Sbjct: 897 ATW 899


>gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
 gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT
           11859]
          Length = 950

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 94/682 (13%), Positives = 192/682 (28%), Gaps = 164/682 (24%)

Query: 31  ILFAFGFDDHPVELWDCVHD---------PVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
           +  AFG  D         +D             ++    LE+       +++ + + V  
Sbjct: 390 VGVAFGTTDGKTSYVPIDNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKYMKHVFA 449

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGET 138
               +++        ++ +       +    K     LK                   E 
Sbjct: 450 N-VGINLAGVS-DDVMLESYVLEAHRSHTIEKLAANWLKYE-------------LRGEEE 494

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWY 187
                 +     + +     E+    V +   + +  +                E  L  
Sbjct: 495 LLGKGAKKLSFSQVSVEKAAEFASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSD 554

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  +D  L       ++ +  +L+++   +           ++L   LF + 
Sbjct: 555 VLFKMEQNGVLIDTKLLDQQTAQLNTKARELEEQAFEVAG-ENFKLSSPKQLGEILFDKM 613

Query: 248 GL----HLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           G+         T     +T + VLS   +  P A      R   ++        L + ++
Sbjct: 614 GVVLEGAKPKKTISGNYSTSEEVLSELAENYPLAKIALEYR-TITKLVTTYTEKLPKMVD 672

Query: 300 S-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DGR+  T +   A  TGR S      QN+P  +    +                    
Sbjct: 673 PKDGRVHTTFEQAVA-VTGRLSSTNPNLQNIPIRTEEGRK-------------------- 711

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                VR   I++ G KL+ AD + IE R++A ++ ++  ++AF+  ED++  T A  F 
Sbjct: 712 -----VREAFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFG 766

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +VT + R I KV+                    G++                    
Sbjct: 767 KERDKVTPNDRRIAKVINF--------------GLMYGMSPFGL---------------- 796

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                         A          +     +  +   V +         ++  +     
Sbjct: 797 --------------AKNLGIGRDEAKNYINKFFARFPGVHDYMERTRALADR--QGYVET 840

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                     GR L   ++    +      R             
Sbjct: 841 TF------------------------GRRLWLPEIHAGGARRAAAER----------AAI 866

Query: 599 ENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASM-LYHLM 651
              +Q  + D++   M+   K          ++L +HDE++ E P+ +       L  +M
Sbjct: 867 NAPMQGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIM 926

Query: 652 TSNPSWAKGLPLKAEGYESKRY 673
            S       +PL AE      +
Sbjct: 927 DSVTE--LHVPLIAEVGVGDNW 946


>gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 872

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 92/693 (13%), Positives = 199/693 (28%), Gaps = 152/693 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +        D           +  +   AF F +  V   D        + LKE  
Sbjct: 307 KLIAL------LQDSKSIAFYPLIYEGEIKKIAFSFGNDTV-YIDGFQ----IKDLKEIF 355

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E        H    +  V  +   ++    +++ T ++A       +   +   LK    
Sbjct: 356 EKEKFEFTTHEIK-DFLVKLSYKGIECK-SKYMDTAIMAYLLNPSESNYDLDRVLK---- 409

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL--- 178
                K L       E         K        +  +Y         ++ ++L      
Sbjct: 410 -----KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEE 464

Query: 179 -------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                     E  L  + +++   G+ +D  +   L+Q ++    ++  ++         
Sbjct: 465 MDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQ-F 523

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L  +LF +  L +   T+   +T   VL            +   R   ++   
Sbjct: 524 NVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQ-LTKLKS 582

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +N  +  M+ + R+    + +  + TGR S      QN+P                  
Sbjct: 583 TYINGFLPLMDENNRVHSNFKQMV-TSTGRISSTEPNLQNIPIREEFGR----------- 630

Query: 349 SITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R   I   +   +V AD + IE RVLA ++G++  +++F   ED
Sbjct: 631 --------------QIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNED 676

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +++ T +  F V   +VT + R   K +                    G++    +    
Sbjct: 677 IHLRTASEVFKVPMEKVTPEMRRAAKAVNF--------------GIIYGISDYGLS---- 718

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                      +        +     + +++  V E   ++ + 
Sbjct: 719 --------------------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRF 752

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            ++                          N  ++    R     ++ +      T   Q 
Sbjct: 753 AKE--------------------------NGYVITIMNRRRYIPEINSRNF---TQRSQA 783

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDE 641
            R            +Q  + DI+   M+              ++L VHDE+V +T   + 
Sbjct: 784 ERLAMNAP------IQGSAADIIKMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEV 837

Query: 642 FNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
                +    M +       +PL  E      +
Sbjct: 838 EIVKKILKDNMENVVQ--LKVPLVVEIGVGPNW 868


>gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144]
          Length = 876

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 94/663 (14%), Positives = 193/663 (29%), Gaps = 131/663 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81
           Y +D  ++ F F  +   V +     D    + L + LE+ + T + +++   +   V  
Sbjct: 328 YLKD-TILKFGFYTNHQHVVI--NAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSA 381

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               ++I        ++ +       ++  V     +S       K+ I  F KG+ H  
Sbjct: 382 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSV--VSLYGQNYVKDNITIFGKGKKHHI 438

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
             +     H  +           +    E + ++E L   E  L  +   + + G   D+
Sbjct: 439 PEEPILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDI 498

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                +   +  +   L   +   + G   +    ++L   LF    L +   T+   +T
Sbjct: 499 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 557

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    +   R   ++     +  L + ++ D R+        A +TGR
Sbjct: 558 AVDVLEKLQGEHPIIDDILEYRQ-LAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377
            S      QN+P       +                         +R      S+   ++
Sbjct: 616 LSSIDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 650

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +  ++    AF    D++  T  + FNV   QV    R   K +  
Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINRHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++    +                                  
Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLG 726

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +     +      V +  +++    +     G                      
Sbjct: 727 ITRKQAKAFIDDYLASFPGVKQYMSDI---VKDAKAQGYVETLLH--------------- 768

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   R     D+ +             R            +Q  + DI+   M+  
Sbjct: 769 --------RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKF 811

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670
           ++          ++L VHDE++ E P ++  + S  +  +M         +PLK +    
Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869

Query: 671 KRY 673
             +
Sbjct: 870 ATW 872


>gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 852

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 115/675 (17%), Positives = 207/675 (30%), Gaps = 154/675 (22%)

Query: 30  VILFAFGFDDHPVELWDCVHDP----VMPQVLKE-----ALENTDVTIVAHNSYFERTVL 80
           ++       D         HD      +P+          L +  V    H    +  VL
Sbjct: 297 LVGLGIALPDGRTAYVPLRHDVLGSVQVPEARFAHVMGGLLADPAVKKGGH----DLKVL 352

Query: 81  KACFNLDIPI---HRWICTLVLARSNGLP---SALKAVG-EALKLSSQKM---EEGKE-- 128
                  + +          +L+          AL  +  E L L    +    EGK+  
Sbjct: 353 SLLLG-GMKLTLQGAHDDVELLSYLLNPSRREHALPDLSRERLGLELPALPATAEGKKGR 411

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
            +      E       R     R A RL+ E     +                E  L  +
Sbjct: 412 PLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALAR---------DMELPLLPI 462

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +  +G  +D A+  TL+  VD E     + + +L      +     +L   L+ +  
Sbjct: 463 LARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQ-EFNVGSNPQLAQVLYEKLQ 521

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +    +   +T Q VL    +  P    +   R   S+     L+TL   +  DGR+ 
Sbjct: 522 LPILKKGKTGPSTDQEVLEKLAEQHPLPGAILEYR-SLSKLKSTYLDTLPGLVAKDGRIH 580

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T     A+ TGR S      QN+P  +    E                         +R
Sbjct: 581 TTYHQA-ATATGRLSSSDPNLQNIPVRTELGRE-------------------------IR 614

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              +A  G +LV AD + +E R+LA +A +   L AF+  ED++  T A  F V P +V 
Sbjct: 615 RAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVD 674

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           +DQR + K +                    GL+ +  +  +                   
Sbjct: 675 RDQRRVAKTVNF--------------GIAYGLSPHGLSTRLSI----------------- 703

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                               + + +  +++ +      L    E+  + G          
Sbjct: 704 -------------SVEEARDIIERYFTRYAGIRRY---LEDTVERARKTGYVETM----- 742

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                              GR  +  D+ +    +     +               +Q  
Sbjct: 743 ------------------FGRRRLMADLNSKNRAVAQAAER---------AAINMPIQGT 775

Query: 606 SRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658
           + D++ + M+   +A         ++L VHDE++ E P+ +      L    M+S  +  
Sbjct: 776 AADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQCMSSVAT-- 833

Query: 659 KGLPLKAEGYESKRY 673
             +PLK +    K +
Sbjct: 834 LKVPLKVDVGAGKTW 848


>gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus]
          Length = 554

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 185/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 77  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 117

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 118 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 168

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 169 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 227

Query: 255 T-----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
           T      +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 228 TENTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 286

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 287 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 320

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 321 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 380

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 381 RRTAKTINY--------------GVLYGMS------------------------------ 396

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +   + + Q   +V      + +  E+    G             
Sbjct: 397 AHHLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 445

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 446 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 481

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 482 LMKLAMVKLLPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 539

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 540 EVEVGIGEDW 549


>gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045]
          Length = 876

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 95/663 (14%), Positives = 194/663 (29%), Gaps = 131/663 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81
           Y +D  ++ F F  +   V +     D    + L + LE+ + T + +++   +   V  
Sbjct: 328 YLKD-TILKFGFYTNHQHVVI--NAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSA 381

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               ++I        ++ +       ++  V     +S       K+ I  F KG+ H  
Sbjct: 382 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSV--VSLYGQNYVKDNITIFGKGKKHHI 438

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
             +     H  +           +    E + ++E L   E  L  +   + + G   D+
Sbjct: 439 PEEPILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDI 498

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                +   +  +   L   +   + G   +    ++L   LF    L +   T+   +T
Sbjct: 499 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 557

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    +   R   ++     +  L + ++ D R+        A +TGR
Sbjct: 558 AVDVLEKLQGEHPIIDDILEYRQ-LAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377
            S      QN+P       +                         +R      S+   ++
Sbjct: 616 LSSIDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 650

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +  ++    AF  G D++  T  + FNV   QV    R   K +  
Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++    +                                  
Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLG 726

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +     +      V +  +++    +     G                      
Sbjct: 727 ITRKQAKAFIDDYLASFPGVKQYMSDI---VKDAKAQGYVETLLH--------------- 768

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   R     D+ +             R            +Q  + DI+   M+  
Sbjct: 769 --------RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKF 811

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670
           ++          ++L VHDE++ E P ++  + S  +  +M         +PLK +    
Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869

Query: 671 KRY 673
             +
Sbjct: 870 ATW 872


>gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
 gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM
           16795]
          Length = 882

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 101/681 (14%), Positives = 211/681 (30%), Gaps = 148/681 (21%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75
           +   G      D  V+      D + +      ++  +PQ +K  L N ++    ++   
Sbjct: 323 IDVIGKEGNILDKRVLYVFLSLDGNEIYYV---NEDELPQ-IKTLLSNPEIKKHGYDLKE 378

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARF 133
           +  +L   + +++         +          ++ +    A+K  ++K++  ++L+   
Sbjct: 379 DY-ILLKPYEIELNSMD-FDITIAEYLIDSKSSTSYECSAIAMKYLTRKIKSKEDLL--- 433

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQ 183
                      + K      +     Y    +     ++ ++E    +          E 
Sbjct: 434 -------GKGAKAKKFDEIEFDELSAYIGDILNTVNGVYLKMEEKLKETEMDGLFYHVEM 486

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +  ++   G  VD    + L +       +L+ E+  L      +    ++L   L
Sbjct: 487 PLVEVLGSMEYIGMKVDKDQLNELKEKFTTIINELENEIFELAG-EPFNINSPKQLGVVL 545

Query: 244 FLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           F + GL +   T+   +T   VL   +       ++   R    +     +  L++ +N 
Sbjct: 546 FEKLGLPVIKKTKTGYSTNAEVLEKLRDKHEIIDKITEYRQIV-KLNSTYVEGLLKIINP 604

Query: 301 D-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
             GR+  +      + TGR S      QN+P  +    +                     
Sbjct: 605 KTGRIHSSFNQ-TITTTGRISSTEPNMQNIPVKTEMGRD--------------------- 642

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +R   +A E  KLV AD + +E RVLA M+G++  + AF+ GED++  T ++ F+V
Sbjct: 643 ----IRKVFVADENCKLVDADYSQVELRVLAHMSGDENMIDAFKHGEDIHSKTASQIFDV 698

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
               VT  QR   K +                    G      +                
Sbjct: 699 DIKDVTSKQRIEAKAIN--------------FGIIYGKTDFGLSQ--------------- 729

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                          +        +    ++  K+ ++ E      +A E   E G A  
Sbjct: 730 ---------------DLNIPVATAKAYIDSYFNKYPKIKEFM---DEAVESATETGYATT 771

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                                     R     ++  +   +     Q  R          
Sbjct: 772 ILN-----------------------RRRYIPEIKASNFIVRN---QGKRFAMNAP---- 801

Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMT 652
             +Q  + DI+   M+N             ++L VHDE++ E  D +   A  +    M 
Sbjct: 802 --IQGSAADIIKVAMVNVYNKLKENNMKSKLILQVHDELIVEAVDEELEMAEKIVREEME 859

Query: 653 SNPSWAKGLPLKAEGYESKRY 673
           +    +  + L  +      +
Sbjct: 860 NA--QSMDVKLDVDLNTGDSW 878


>gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108]
 gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108]
          Length = 850

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 89/647 (13%), Positives = 192/647 (29%), Gaps = 147/647 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI--PIHRWICT 96
           D          D  + + +   L++  V IV     ++   +    NL+    I      
Sbjct: 335 DQESNTVFVTRDRHLVEEI---LKSDTVKIV-----YDLKNIFHQLNLEDTDNIKNCEDV 386

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           ++ +       +      + +L +  +      I    K +    +    +         
Sbjct: 387 MIASYVLDSTRS------SYELETLFVSYLNTDIEAVKKDKKMVSVVLLKRLWDDLLR-- 438

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
                  D+   + ++       + E+ L  +   +   G+ VD        + ++ +  
Sbjct: 439 -----LIDLNSCQFLY------ENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIENKIL 487

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQA 273
           KL+ ++  +      +    ++L   LF +  L +   T+   +T   VL          
Sbjct: 488 KLETQIYQIAG-EWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIV 546

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             + + RM  ++        L++A+N       T      + TGR +      QN+P   
Sbjct: 547 PLILDYRMY-TKILTTYCQGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKY 605

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
              +                          +R   +  EG  L+ AD + IE R+LA ++
Sbjct: 606 DEGK-------------------------LIRKVFVPEEGHVLIDADYSQIELRILAHIS 640

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF+   D++  T A  F V  A VT + R+  K +   +              
Sbjct: 641 EDERLINAFKNNIDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIV------------- 687

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                  A +              + ++
Sbjct: 688 -YGISD------------------------------YGLARDIKISRKEAAEFINKYFER 716

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           + +V E  + + +   +                          N  ++    R    +D+
Sbjct: 717 YPKVKEYLDNIVRFARE--------------------------NGYVLTLFNRKRYVKDI 750

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627
            +             R            +Q  + DI+   M+   +          I+L 
Sbjct: 751 KSAN---RNARSYAERIAMNSP------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQ 801

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE++ E P  ++     +    M +    A  +PL  E  E   +
Sbjct: 802 VHDELLIEAPYEEKDIVKRIVKREMENAV--ALKVPLVVEVKEGLNW 846


>gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
 gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863]
          Length = 874

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 103/654 (15%), Positives = 182/654 (27%), Gaps = 146/654 (22%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLD 87
                   D P  L        +       L ++   +V H    +   L        ++
Sbjct: 344 RPVGLAMGDPPAWL----EGEALADP--AELLDSGARLVGH----DLKPLYNWLYSQGIE 393

Query: 88  IPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            P      T + A       +   L  +     L      +  +L               
Sbjct: 394 -PPAPAFDTALAAYLLDPSRSSYDLADLCRQHGLGELPPGDTPDL------------WAT 440

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           R         R+  E     V     +++        E  L  +   +   G  +D A  
Sbjct: 441 RASVLPELHRRMEAELAAQGVD---RLYR------EVELPLMPILAEMEAVGVGIDPAAL 491

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQ 260
           H ++  ++    ++ QE+  L      +    ++L   LF + GL     T++    T  
Sbjct: 492 HEMSVELERRILQVSQEIYELAGMQ-FNISSPKQLGDVLFGKLGLPSGKKTKSGGYSTDA 550

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL       P A +V + R   ++     ++ L + +  DGR+  T     A  TGR S
Sbjct: 551 EVLEELAAAYPIAARVLDYR-TLTKLKGTYVDALGQLIARDGRIHTTFAQTVAE-TGRLS 608

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QN+P                                 +R   +A  G  L+ AD
Sbjct: 609 SKDPNLQNIPIRIEEGRR-------------------------IRKAFVARPGCVLLSAD 643

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RV+A  +G+    +AF   +D++  T A  F V   QVT + R   K +   L 
Sbjct: 644 YSQIELRVVAHFSGDPALREAFLHDQDIHTRTAAEVFGVPMDQVTPEMRRQAKAVNFGLI 703

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y               + ++         +   ++     +    +    E        G
Sbjct: 704 YGQT-----DFGLARSVGISRAEARAFIETYFAKFAGVRRYMEEKKAEAREKGYVTTLDG 758

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                      + + RV  +     +    T   G A    KR  + +    +++     
Sbjct: 759 RRRPLP-----EINHRVFTIRQNAERMAINTPIQGTAADLMKRAMIAVRRAMREEGL--- 810

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                                                        +R      M+     
Sbjct: 811 --------------------------------------------SAR------MI----- 815

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                L VHDE+V E P  +    + L    M         +PLK E      +
Sbjct: 816 -----LQVHDELVFECPVGEVDRLARLVRREMEGAMK--LDVPLKVEVKVGPDW 862


>gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402]
          Length = 875

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 104/684 (15%), Positives = 202/684 (29%), Gaps = 132/684 (19%)

Query: 5   FIDFETRSPIDLT-KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
             DF T   + +  +C    Y ++  +I            +          +    AL+N
Sbjct: 305 TFDFSTIESMAIRIRCFQDNYLKN-EIIGVGILV-GAHTFVIPPDEIAQN-ESFINALQN 361

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            D     +++  E  VL +  ++DI      C ++ +        +  V ++ ++     
Sbjct: 362 EDTKKYVYDAK-ETKVLFSRLDIDIKGIE-HCVMLASYLLDPALKIIDVAQSAQMQGIYY 419

Query: 124 EEGKELIARFCKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            E  E+I  F KG         N   H         E     +    E+ +    L++ E
Sbjct: 420 VESDEMI--FGKGAKMHIPERTNLFKHIASEVNAIHEVSALQIRKLNELKQLEL-LTALE 476

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +  +G  V+      + Q +     +L   +         +    ++L   
Sbjct: 477 LPLSLVLADMEMQGIKVNRQTLQEMQQEIQSRLDELITRIHEHAGST-FNINSPKQLGVV 535

Query: 243 LFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           LF +  L      +     +T   VL S     P    +   R   S+     +  L + 
Sbjct: 536 LFEDLKLDSPKKKKTKTGYSTAVDVLESLAGKHPIIEDILLYR-TLSKLQSTYVEGLQKL 594

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +  D ++      + A +TGR S      QN+P       +                   
Sbjct: 595 IGDDDKIHTRFNQVIA-QTGRLSSIDPNLQNIPVRLDEGRK------------------- 634

Query: 358 QIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R   +       +  AD + IE RVLA + G++  L+AF  G D++  T  + 
Sbjct: 635 ------IRKAFVPSEPNSVIFAADYSQIELRVLAHITGDKGMLEAFNQGIDIHTKTAMKV 688

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           FNV   +VT D R   K +                    G++    +             
Sbjct: 689 FNVEREEVTSDMRRQAKAVNF--------------GIVYGISDYGLSQ------------ 722

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                                      +     + +    V    +++ Q  +Q    G 
Sbjct: 723 ------------------SLGITRKDAQAFIDNYLESFPDVKAYMHDIIQEAKQ---QGY 761

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                        R     D+ +             R       
Sbjct: 762 VTTLLN-----------------------RRRYIPDITSRNF---NLRGFAERTAMNTP- 794

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYH 649
                +Q  + DI+   M++  +          ++L VHDE++ E P  +    S+ + H
Sbjct: 795 -----IQGSAADIIKLAMVHYNEQVKETDFKAKLLLQVHDELIFEVPKDELEAFSLFVKH 849

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
           +M +       +PL+ E    + +
Sbjct: 850 VMENALE--LKVPLEVEYDSGESW 871


>gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
 gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163]
          Length = 911

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 95/654 (14%), Positives = 183/654 (27%), Gaps = 128/654 (19%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           AF   +     +      ++   +   L   D+     N+  E  VL     L I     
Sbjct: 368 AFVVGNENDGYFASRDLELLNSSVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLD- 425

Query: 94  ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              L+++           L  +     +  +   E           +      +    +H
Sbjct: 426 FDFLLVSYLLDTTDNDNQLATLANRFNVFLESDAEV-----YGSGVKFKIPENNETLFSH 480

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                                 ++ E     E  L  +  ++   G  +D A    L Q 
Sbjct: 481 MANKASTISKLHDPSMKKLSDHQQAELYRQIELPLSKVLASMEINGIKLDQAELKKLGQE 540

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
            D    +L++++         +    ++L   LF+   +     T+   +T   VL    
Sbjct: 541 FDQRIFELEKQIYEEAGQ-EFNINSPKQLADLLFVHMKIPPIKKTKTGYSTAANVLEELA 599

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           +  P    +   R   ++     +  L+E +N D     T      ++TGR S      Q
Sbjct: 600 EKYPFVGLILQYRQ-LAKLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQ 658

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEA 386
           N+P      +                          +R   + S EG ++  +D + IE 
Sbjct: 659 NIPDRDEEGKR-------------------------IRKAFVPSHEGWEIFGSDYSQIEL 693

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA + G++   KAFE+GED++  T    F ++  Q                       
Sbjct: 694 RVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQ----------------------- 730

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                               K          A NF      +    A          + +
Sbjct: 731 --------------------KITFDQRRRAKAVNFGIVYGISDFGLAQRLGISRIEGKEI 770

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + +  +  +V    + +     +                             +   + R
Sbjct: 771 IQTYFHEFPKVKNWIDSIIALAHK--------------------------QGYVETIAQR 804

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                D+ +             R  T         +Q  + DI+   M+   +A      
Sbjct: 805 RRYLPDIHSKNF---NLRSFAERTATNTP------IQGSAADIIKIAMIKMQQALDDNHL 855

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              ++L VHDE++ E P  +      L   +M S       +PL+ E +    +
Sbjct: 856 KAKMLLQVHDELIFEAPKQEIDILEELVPKVMDSAVK--LNVPLRVEAHHGVNW 907


>gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
 gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965]
          Length = 1072

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 95/594 (15%), Positives = 168/594 (28%), Gaps = 127/594 (21%)

Query: 90   IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
                    + A                 + + +   G +L                   +
Sbjct: 586  PAPVTDLKLAAYLLDPVRN-----RYHLVDTARQFFGWDLEE---GPADRPGDPAVCTSS 637

Query: 150  HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
                        +  V                E  L  +   + + G  VD      L +
Sbjct: 638  LLGRDAALCARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGR 697

Query: 210  IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
            +      +L +++  L      +    ++L   LF   GL +   T+   +T   VL + 
Sbjct: 698  LFTRRSQELAEQIYELAGQT-FNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETL 756

Query: 267  KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                P A  V   R    +     ++ L E +  DGR+  T Q   A+ TGR S      
Sbjct: 757  AARHPIAELVLEYR-SLVKLQGTYVDGLAEHIGPDGRIHTTFQQTVAA-TGRLSSTQPNL 814

Query: 327  QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
            QN+P                                 +R   +A  G +LV AD + IE 
Sbjct: 815  QNIPIRDEPGR-------------------------SLRRAFVAPPGHRLVAADYSQIEL 849

Query: 387  RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
            RVLA  +G+   ++AF  G+D++  T +  F V   QVT +QR + K             
Sbjct: 850  RVLAHYSGDPGLVEAFAQGQDVHARTASEIFGVPLEQVTPEQRRVAKA------------ 897

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                     G      A  ++ + A                                 R 
Sbjct: 898  --VNFGLAYGQTDFGLARALRIDRA------------------------------DARRF 925

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             + + +++  V        +   +  + G+                            GR
Sbjct: 926  MERYFERYPGVKRYM---EETVRRARQQGEVTTLL-----------------------GR 959

Query: 567  SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                 ++ +   ++        R            +Q  + DI+   M+   +A      
Sbjct: 960  RRPVPEIRHRVFHIRQN---AERVAINTP------IQGTAADIMKLAMIRVHRALAEEGL 1010

Query: 621  GYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               IVL VHDE++ E         A++L   M     +   +PL  E      +
Sbjct: 1011 RARIVLQVHDELLVEAPDAEVAAVAALLRREMEGA--FRLDVPLVVEVKSGANW 1062


>gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 876

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 99/663 (14%), Positives = 190/663 (28%), Gaps = 131/663 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81
           Y +D  ++ FA  +D     + D       P+ L   LEN     + +++   +   ++ 
Sbjct: 328 YLKD-DILKFAL-YDGSNHVVIDADKVHDYPE-LIAWLENDKTEKIVYDAKKSY---IVA 381

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
              ++ I  H     ++ +        +  V   +    Q     KE I  F KG+    
Sbjct: 382 HRLDIAIK-HIVFDVMLASYIIDPSRTIDDVNSVVSYFDQ--HYVKESIEVFGKGKKRHV 438

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
             D    +H           K  +    E + +   L   E  L  +   + + G     
Sbjct: 439 PEDEILDHHVGTIIEAINKTKPKMEAQLEEYNQTNLLDDLELPLARILSEMEETGIYTVA 498

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                + + +  +   L   + +       +    ++L   LF    L +   T+   +T
Sbjct: 499 TDLQEMEKEIQAKLDVLINNIYNAAG-ESFNINSPKQLGVVLFETLELPVIKKTKTGYST 557

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    +   R   S+     +  L + ++ D R+        A +TGR
Sbjct: 558 AVDVLEQLQGQHPIIDYILEYR-TLSKLQSTYVEGLQKVISEDNRIHTRFNQTLA-QTGR 615

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377
            S      QN+P                                 +R    +  +   + 
Sbjct: 616 LSSVDPNLQNIPIRLEEGRR-------------------------IRKAFKSSDDNNVIF 650

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +  ++   +AF   ED++  T  + FNV P +V    R   K +  
Sbjct: 651 SADYSQIELRVLAHITQDESMKQAFINDEDIHTATAMKVFNVQPDEVDSLMRRQAKAVNF 710

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++    +                                  
Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLG 726

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 ++    +      V +   ++    +     G                      
Sbjct: 727 ITRKQAKQFIDDYLDSFPGVKQYMEDI---VKDCKAQGYVETLLH--------------- 768

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN- 616
                   R     D+ +             R            +Q  + DI+   M+N 
Sbjct: 769 --------RRRYIPDITSRNF---NLRGFAERTAMNTP------IQGSAADIIKLAMVNF 811

Query: 617 ATKAG-----YDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670
             +         ++L VHDE++ E P  +    S  +  +M +    A  +PLK E    
Sbjct: 812 VNEVKHTDFHAQLLLQVHDELIFELPKDEVEAFSEFIEEIMDNA--LALDVPLKVETSHG 869

Query: 671 KRY 673
           K +
Sbjct: 870 KTW 872


>gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 866

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 90/646 (13%), Positives = 177/646 (27%), Gaps = 145/646 (22%)

Query: 40  HPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
             V             Q +K  LE+  +    HN+ F   VL     +++       T++
Sbjct: 350 ERVYQLKLEAGDDYKLQWIKALLESAVIKKYLHNAKF-IQVLLLRHGIELRGVA-GDTML 407

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
           LA  +        +   LK   Q       L A            +   P          
Sbjct: 408 LAYVDDPAFEGDELDACLKKHLQLNIAENNLAALVNTIRELYFQLEGQIPAELRELLQ-- 465

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
                                  E  +  +   +   G  V+ +    +++ +       
Sbjct: 466 ---------------------EVEMPMSEVLARMEFCGVKVERSTLARISEELASGIAGH 504

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275
           ++ +  L      +    ++L   LF + GL +    +   +T   VL    +       
Sbjct: 505 EERIFELAGSS-FNINSPKQLGKVLFEDLGLRVIKKGKTGYSTGAEVLEELYQEHEIIAH 563

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           + N R   S+      + L E ++ +     T+     + TGR S      QN+P     
Sbjct: 564 ILNYRQ-LSKIKSTYADALQELIHPETGRVHTIFKQAQTATGRLSSVEPNLQNIPIRMEE 622

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394
                                       +R   +A      ++ AD + I+ R LA ++G
Sbjct: 623 GRR-------------------------IRQAFVAPGPDWLIMAADYSQIDLRSLAHISG 657

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++ F++G D++  T    F+V    V  + R   K +                   
Sbjct: 658 DERLIETFKSGVDIHTRTAVEIFHVPVEWVDSELRRRAKAVNF--------------GII 703

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++                                  A +         +    +   +
Sbjct: 704 YGISDFGL------------------------------ARDTGVSRKEARKYIDNYLNSY 733

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +   ++    E    +G      K                       R     ++ 
Sbjct: 734 PGVKKYMEDI---VEFGRRHGYVETLLK-----------------------RRRYLPELN 767

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
                +    R+               VQ  S DI+   M+   +          ++L V
Sbjct: 768 ARNKMVQAFGRR---------MALNTPVQGTSADIIKLAMIKVDEEIRKRRLQARLLLQV 818

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE++ E P T+    S +L   M +  S    +PL+        +
Sbjct: 819 HDELLLELPRTELEEVSGLLRDCMENACS--LKVPLEVSLKTGPNW 862


>gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028]
          Length = 876

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 95/663 (14%), Positives = 193/663 (29%), Gaps = 131/663 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81
           Y +D  ++ F F  +   V +     D    + L + LE+ + T + +++   +   V  
Sbjct: 328 YLKD-TILKFGFYTNHQHVVI--NAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSA 381

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               ++I        ++ +       ++  V     +S       K+ I  F KG+ H  
Sbjct: 382 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSV--VSLYGQNYVKDNITIFGKGKKHHI 438

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
             +     H  +           +    E + + E L   E  L  +   + + G   D+
Sbjct: 439 PEEPILNEHIASVTEAIAAVTPTMKSQLEDYNQNELLKDLELPLARILSEMEEIGIYTDI 498

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                +   +  +   L   +   + G   +    ++L   LF    L +   T+   +T
Sbjct: 499 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 557

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    +   R   ++     +  L + ++ D R+        A +TGR
Sbjct: 558 AVDVLEKLQGEHPIIDDILEYRQ-LAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377
            S      QN+P       +                         +R      S+   ++
Sbjct: 616 LSSIDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 650

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +  ++    AF  G D++  T  + FNV   QV    R   K +  
Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++    +                                  
Sbjct: 711 --------------GIVYGISDYGLSQ------------------------------SLG 726

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +     +      V +  +++    +     G                      
Sbjct: 727 ITRKQAKAFIDDYLASFPGVKQYMSDI---VKDAKAQGYVETLLH--------------- 768

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   R     D+ +             R            +Q  + DI+   M+  
Sbjct: 769 --------RRRYIPDITSRNF---NLRSFAERTAMNTP------IQGSAADIIKLAMVKF 811

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670
           ++          ++L VHDE++ E P ++  + S  +  +M         +PLK +    
Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869

Query: 671 KRY 673
             +
Sbjct: 870 ATW 872


>gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 972

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 109/727 (14%), Positives = 194/727 (26%), Gaps = 177/727 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVM------ 53
            + ID ET     +    +         +  A    D  V         H   +      
Sbjct: 363 EIGIDTETDGLDPMQCNIVG--------LCLAAAAKDGSVPKGYYIPLGHTDDIGFPYPA 414

Query: 54  -----------PQVLKEALEN---------------TDVTI---VAHNSYFERTVLKACF 84
                       +   +   +                D      V HN+ F+  VL   F
Sbjct: 415 GKGGNFDFNATKKWFIDFWNDSCTLPGDISDSGSKQPDSAKRSLVFHNAKFDLHVLARTF 474

Query: 85  NLD---IPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
            L    I     I TL+ A         L    + ++L   +M   + LI          
Sbjct: 475 GLTQKQIDSANIIDTLIAAWMLSPGQTGLGLDNQVMQLLQHEMIPIENLI---------- 524

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQ 190
               +    +R   +   EY   D   T  ++  L     K             L  +  
Sbjct: 525 GRGKKQITFNRTPIKDATEYGAEDAVYTLRLWAPLRAKLQKYDYEKYFFSQEMPLLKVLY 584

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  VD  +   L   ++    KL++E+  +      +    ++L   LF   GL 
Sbjct: 585 QMEGVGAFVDTKILKKLQTDLEHRIEKLEKEICDMAGC-EFNIGSPKQLGEVLFDTLGLP 643

Query: 251 LEDLTETTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
                 +T   VL         P    V   R    +     ++ L   +N D +   T 
Sbjct: 644 EIKKR-STDAAVLEELSFRSAHPIVFAVIEYR-ELKKMQSTYVSVLPTLVNPDTKRIHTS 701

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P  S                          +   +R+  
Sbjct: 702 FIQWGTATGRLSSRDPNLQNIPVRS-------------------------DLGKQIRAAF 736

Query: 369 IAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +       ++  D + IE R+LA ++G++  +++++ G D++  T A    V+   VT D
Sbjct: 737 VPQNPNNVILAVDYSQIELRMLAHLSGDEALIESYKEGIDIHARTAAAINRVSLEDVTAD 796

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   KV+   + Y   A    +      L +         +   E ++  + F    + 
Sbjct: 797 MRRDAKVVNFGVLYGMTAFRLSR-----DLKIPMAQAKSFIDGYFEMYQGVQKFIDDTKA 851

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                   +   G    R            S++     +    T   G A    K   + 
Sbjct: 852 AAHRDGYVETLSGR--RRYIAGIDSSDRMESQM---AERMAVNTPVQGSAADLIKIAMI- 905

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                                + + + +    L                           
Sbjct: 906 --------------------RIQKRINDENLPLR-------------------------- 919

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                 M+              DE+V E P        +M+   M         +PL A 
Sbjct: 920 -----MMLQVH-----------DELVFECPKDQVEALSAMVKSEMEGAME--LKVPLVAS 961

Query: 667 GYESKRY 673
               K +
Sbjct: 962 VGFGKNW 968


>gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel]
 gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel]
          Length = 849

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 94/662 (14%), Positives = 190/662 (28%), Gaps = 152/662 (22%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
                D  +   +  +D                +V K+ L +  V  V H++     +++
Sbjct: 323 YAKIADETINELSVAYDREHALTIRKEEVQNFMEVAKQILASDSVLKVVHDAK---LIMQ 379

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAV-GEALKLSSQKMEEGKELIARFCKGETHE 140
                   +  +   ++++ S    S   ++ G   +   QK            K     
Sbjct: 380 HF----PDLGVFDDVMLMSYSLDASSHDHSLTGMTYRYLHQK---------FPAKMACAL 426

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
                       + RLF  Y         ++          E+ L  +   + + G  VD
Sbjct: 427 VQLHSVMREKLLSDRLFTVY--------YQL----------ERPLVRVLYEMQEVGIEVD 468

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLT 255
             +   L++        L++E+  L      +     +L   LF   GL      +   +
Sbjct: 469 TEILKQLSRDFHGSIRSLEREIYGLAGCK-FNVASARQLGKLLFERMGLSSSTKKMPSGS 527

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL+       +           S+     ++ L+  + +      T   + A+ 
Sbjct: 528 YSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTERVHTSYSMVATA 587

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  S+   E                         +R   +A EG K
Sbjct: 588 TGRISSSNPNLQNIPIRSKEGTE-------------------------IRKAFVAREGHK 622

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           LV AD + +E +++A +AG Q    AF  G+D++  T  + F         + R   K +
Sbjct: 623 LVSADYSQMELKIMAHIAGVQAFRDAFAEGKDIHQVTAQQIFGDDVTD--PELRRRAKSI 680

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    A  V                             
Sbjct: 681 NF--------------GIIYGMSPFGLAKNV----------------------------- 697

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                    +  + + + +  +      +     +                         
Sbjct: 698 -GITRQEATQYVEQYFRSYPEIKNYMEAIKAYARK------------------------- 731

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                    GR      + + +  +        R            +Q  + D++ + M+
Sbjct: 732 -YGYTRTAFGRKCYVPGINSAQHAIRGF---AERAAINAP------IQGTAADVVKKAMI 781

Query: 616 NATKAGY--DIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKR 672
           N         I+L VHDE++ E P++   N + L   +M    S+   +PL+ +      
Sbjct: 782 NLRDKLEVGTIILQVHDELLVEVPESHVDNVAQLMKEVMEGVASF--SVPLRVDIGVGNS 839

Query: 673 YR 674
           + 
Sbjct: 840 WG 841


>gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046]
          Length = 876

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/657 (12%), Positives = 183/657 (27%), Gaps = 130/657 (19%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
           +  A    +  V          +     LK  L++        +S      +     +++
Sbjct: 332 LGLALSDGERTVY----TAIDNVVDNADLKAWLQDETKKKYIVDSK-ATQAMLHRLGIEL 386

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                   L+ +       +   V    K    +  +  E I  + KG         +  
Sbjct: 387 KGVE-FDLLLASYILKPSISGDDVATLAKEFGYQDVQSNEAI--YGKGAKWVVPGADHVA 443

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            H     +     +  +    +  ++ E     E  L ++   +   G  V++     + 
Sbjct: 444 EHVSRKAVAVWKLQPLLDQKLKENEQFELYKELELPLAHILGKMESEGITVNIDTLRQMG 503

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
             +  +   ++  +  L      +    ++L   LF + GL +   T+   +T   VL  
Sbjct: 504 DDLKAKLEVMEATIYELAG-EKFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEK 562

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +        +   R   ++     +  L++ ++ +     T      + TGR S     
Sbjct: 563 LQSEHDIVKYILEYR-TLAKLQSTYIEGLIKEVHKEDSKVHTRFQQALTSTGRLSSTNPN 621

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGI 384
            QN+P       +                         +R   +   +   L  AD + I
Sbjct: 622 LQNIPIRLEEGRK-------------------------IRKAFVPSKKDWILFAADYSQI 656

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQG 443
           E RVLA M G++  ++AF+ G D++  T    FN+  P +VT   R   K +        
Sbjct: 657 ELRVLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKAVNF------ 710

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++    +  +                                     
Sbjct: 711 --------GIVYGISDYGLSQSLDI------------------------------TRKEA 732

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
               + + Q    V    +   +  ++                             +   
Sbjct: 733 AIFIENYLQSFPGVKNYMDTSIEEAKKA--------------------------GFVTTI 766

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
             R     D+ ++            R            +Q  + DI+ + M++       
Sbjct: 767 LNRRRYLPDITSSNF---NLRSFAERTAMNTP------IQGSAADIIKKAMIDMNARLEQ 817

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E P  +      +   +M +       +PLK E      +
Sbjct: 818 EGLQTKLLLQVHDELIFEAPKEEIEILERIVPEVMENAIK--LSVPLKVEFSYGATW 872


>gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2]
 gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2]
          Length = 658

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 172/704 (24%), Positives = 283/704 (40%), Gaps = 85/704 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60
           LF+DFE  S  DL   G+ +Y        + F F        +LW+      +P+ +   
Sbjct: 8   LFLDFEVASKTDLKAHGLARYLACPTTKPYCFTFVLPGMRQADLWEL--GQPIPRQILAH 65

Query: 61  LENTDVTIVAHNSYFERTVLK----ACFNLDIPI----HRWICTLVLARSNGLPSALKAV 112
           +     T VAHN+ F+  +           D+P      +  C+   AR NGLP  L   
Sbjct: 66  IA-AGKTFVAHNAAFDALIWNDVLPRWVKADLPQLNLRGQVQCSAARARYNGLPGGLGRA 124

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            EAL L  QK  EG   +                   H E +    +Y   D  V   ++
Sbjct: 125 AEALGLPLQKDREGAAAMKELMHNPE------WTPATHPELFARTYKYALLDTDVMVALW 178

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +  +P+  KEQ  W LD  IN RG+ VDV  A  + ++  + +  +D E+E+ T G + +
Sbjct: 179 EATQPMPPKEQLYWQLDLEINMRGFGVDVEAAEGMAEMAQLAQAMIDFEVETATQGKILT 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +  ++++        G  L++    + + +L+    +      V   R+ ASR+   K +
Sbjct: 239 TSVIKQI-QSFAAGLGAELDEAGRESVKALLTR-DDVPEVLRDVLTLRLDASRAP-KKHD 295

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWS--GCVFPPQNLPRP--------SRSHEELDQI 342
            ++ A + +GR+  +  + GA      +         N+ RP        + ++ +  + 
Sbjct: 296 AILRA-HVNGRMCHSTVYHGALSGRSTAMGCGDVQLLNVARPRPGRKVKDTITYLDAARR 354

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
             +   S      PL  ++D  R    A+  G  LVVADL+GIEAR   W+A ++  L  
Sbjct: 355 RDYDYLSRPEVGPPLAALADAQRHLFCATNPGCILVVADLSGIEARKGPWLANDEGMLVE 414

Query: 402 FETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           +E G D Y    A  F++     VT DQR IGK+  LAL + GG  A   MA   GL L+
Sbjct: 415 YEQGIDGYKVEAATIFDLPDTDAVTSDQRQIGKITRLALQFGGGDGALDNMAKAYGLELS 474

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                       ++  ++R+ H  +S  
Sbjct: 475 E---------------------------------------DLRRKIVWSYRESHPALSTW 495

Query: 521 WNELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG---- 574
           W  L  A    ++      ++   R         +D   L + LPSGR++ Y +      
Sbjct: 496 WASLEYAALIALDQPGRAVVVPIGRGLCTSATFVRDTTALRMELPSGRAISYHNARLVLE 555

Query: 575 -NNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
               + +    +      T   K+   N+ Q ++RD+  E M++       IV  V+DE+
Sbjct: 556 PGASAPIAVYDKPNGVVETLDRKILSNNMTQGLARDLFWEAMLSVAPVE-QIVHHVYDEV 614

Query: 633 VCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E P+   E     L   ++  P WA GLPL AEG+ S  +RK
Sbjct: 615 ILEVPEERAELRLKQLEARLSKAPLWAPGLPLGAEGFVSPYWRK 658


>gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
 gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429]
          Length = 911

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 95/654 (14%), Positives = 183/654 (27%), Gaps = 128/654 (19%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           AF   +     +      ++  ++   L   D+     N+  E  VL     L I     
Sbjct: 368 AFVVGNENDGYFASRDLELLNSLVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLD- 425

Query: 94  ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              L+++           L  +     +  +   E           +      +    +H
Sbjct: 426 FDFLLVSYLLDTTDNDNQLATLANRFNVFLESDAEV-----YGSGVKFKIPENNETLFSH 480

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                                 ++ E     E  L  +  ++   G  +D A    L Q 
Sbjct: 481 MANKASTISKLHDPSMKKLSDHQQAELYRQIELPLSKVLASMEINGIKLDQAELKKLGQE 540

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
            D    +L++++         +    ++L   LF    +     T+   +T   VL    
Sbjct: 541 FDQRIFELEKQIYEEAGQ-EFNINSPKQLADLLFAHMKIPPIKKTKTGYSTAANVLEELA 599

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           +  P    +   R   ++     +  L+E +N D     T      ++TGR S      Q
Sbjct: 600 EKYPFVGLILQYRQ-LAKLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQ 658

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEA 386
           N+P      +                          +R   + S EG ++  +D + IE 
Sbjct: 659 NIPDRDEEGKR-------------------------IRKAFVPSHEGWEIFGSDYSQIEL 693

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA + G++   KAFE+GED++  T    F ++  Q                       
Sbjct: 694 RVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQ----------------------- 730

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                               K          A NF      +    A          + +
Sbjct: 731 --------------------KITFDQRRRAKAVNFGIVYGISDFGLAQRLGTSRIEGKEI 770

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + +  +  +V    + +     +                             +   + R
Sbjct: 771 IQTYFHEFPKVKNWIDSIIALAHK--------------------------QGYVETIAQR 804

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                D+ +             R  T         +Q  + DI+   M+   +A      
Sbjct: 805 RRYLPDIHSKNF---NLRSFAERTATNTP------IQGSAADIIKIAMIKMQQALDDNHL 855

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              ++L VHDE++ E P  +      L   +M S       +PL+ E +    +
Sbjct: 856 KAKMLLQVHDELIFEAPKQEIDILEELVPKVMDSAVK--LNVPLRVEAHHGVNW 907


>gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13]
          Length = 877

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/657 (13%), Positives = 187/657 (28%), Gaps = 125/657 (19%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             +   A    +     +      +  +       +        ++      LK    ++
Sbjct: 331 ADIQGIALV--NETGNYFIPTEVALQSEEFAAFASDHKRKKTVFDAKRAIVALKW-KGIE 387

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +        ++ +           + E  +       E  E +  + KG        +  
Sbjct: 388 LNGID-FDFIIASYIVNPSETSTDLAEIARKKGYYQIETDEAV--YGKGAKRAVPDQQKV 444

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
            +H        +  K       +  ++LE     E  L  +   +   G  VD A    +
Sbjct: 445 ADHLVRKTFAMQEMKESFIHELKDNEQLELFEELEMPLTLVLGEMEALGIKVDKARLEEM 504

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
              +  +  K+++++  L      +    ++L   LF + GL     T+   +T   VL 
Sbjct: 505 GTDLGEKLEKIEEKIFDLAG-EKFNINSPKQLGVILFEKLGLPPVKKTKTGYSTSADVLE 563

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              +      Q+ + R    +     +  L++ ++ D     T      ++TGR S    
Sbjct: 564 KLAEKHEVIQQILHYRQ-LGKLKSTYIEGLLKVIHEDSNKIHTRFNQALTQTGRLSSIDP 622

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383
             QN+P       +                         +R   I S E   +  AD + 
Sbjct: 623 NLQNIPVRLEEGRK-------------------------IREAFIPSHEDWVIFAADYSQ 657

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA +A ++  ++AF+   D++  T    F+V+  +VT + R   K +   + Y  
Sbjct: 658 IELRVLAHIANDEKLIEAFKEDADIHTKTAMDVFHVSEDEVTSNMRRQAKAVNFGIVYGI 717

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                     +  L +         +   E +   + +      +  +            
Sbjct: 718 S-----DYGLSQSLGITRKDAKTFIDRYLESFPGVKEYMEDSVLDAKDKGYVTTL----- 767

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                                                 +RR +P +              
Sbjct: 768 ------------------------------------LHRRRYLPEITSSNFNLRSF---- 787

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617
                        R+ +NT                   +Q  + DI+ + M++       
Sbjct: 788 -----------AERTAMNTP------------------IQGSAADIIKKAMIDMANRLEE 818

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE+V E P  +      +   +M         +PLK +      +
Sbjct: 819 ENMKSKVLLQVHDELVFEAPKDEIEKLKKIVPEVMEQAVE--LKVPLKVDYSYGSTW 873


>gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1]
 gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1]
          Length = 903

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 95/654 (14%), Positives = 182/654 (27%), Gaps = 128/654 (19%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           AF   +     +      ++   +   L   D+     N+  E  VL     L I     
Sbjct: 360 AFVVGNENDGYFASRDLELLNSSVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLD- 417

Query: 94  ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              L+++           L  +     +  +   E           +      +    +H
Sbjct: 418 FDFLLVSYLLDTTDNDNQLATLANRFNVFLESDAEV-----YGSGVKFKIPENNETLFSH 472

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                                 ++ E     E  L  +  ++   G  +D A    L Q 
Sbjct: 473 MANKASTISKLHDPSMKKLSDHQQAELYRQIELPLSKVLASMEINGIKLDQAELKKLGQE 532

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
            D    +L++++         +    ++L   LF    +     T+   +T   VL    
Sbjct: 533 FDQRIFELEKQIYEEAGQ-EFNINSPKQLADLLFAHMKIPPIKKTKTGYSTAANVLEELA 591

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           +  P    +   R   ++     +  L+E +N D     T      ++TGR S      Q
Sbjct: 592 EKYPFVGLILQYRQ-LAKLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQ 650

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEA 386
           N+P      +                          +R   + S EG ++  +D + IE 
Sbjct: 651 NIPDRDEEGKR-------------------------IRKAFVPSHEGWEIFGSDYSQIEL 685

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA + G++   KAFE+GED++  T    F ++  Q                       
Sbjct: 686 RVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQ----------------------- 722

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                               K          A NF      +    A          + +
Sbjct: 723 --------------------KITFDQRRRAKAVNFGIVYGISDFGLAQRLGTSRIEGKEI 762

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + +  +  +V    + +     +                             +   + R
Sbjct: 763 IQTYFHEFPKVKNWIDSIIALAHK--------------------------QGYVETIAQR 796

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                D+ +             R  T         +Q  + DI+   M+   +A      
Sbjct: 797 RRYLPDIHSKNF---NLRSFAERTATNTP------IQGSAADIIKIAMIKMQQALDDNHL 847

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              ++L VHDE++ E P  +      L   +M S       +PL+ E +    +
Sbjct: 848 KAKMLLQVHDELIFEAPKQEIDILEELVPKVMDSAVK--LNVPLRVEAHHGVNW 899


>gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 850

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/647 (13%), Positives = 190/647 (29%), Gaps = 147/647 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI--PIHRWICT 96
           D          D  + + +   L++  V IV     ++   +    NL+    I      
Sbjct: 335 DQESNTVFVTRDGHLVEEI---LKSDTVKIV-----YDLKNIFHQLNLEDTDNIKNCEDV 386

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           ++ +       +      + +L +  +      I    K +    +    +         
Sbjct: 387 MIASYVLDSTRS------SYELETLFVSYLNTDIEAVRKDKKIVSVVLLKRLWDELLR-- 438

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
                  D+   + ++       + E+ L  +   +   G+ VD        + ++ +  
Sbjct: 439 -----LIDLNSCKFLY------ENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIESKIL 487

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQA 273
           KL+ ++  +      +    ++L   LF +  L +   T+   +T   VL          
Sbjct: 488 KLETQIYQIAG-EWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIV 546

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             + + RM  ++        L++A+N       T      + TGR +      QN+P   
Sbjct: 547 PLILDYRMY-TKILTTYCQGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKY 605

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
              +                          +R   +  EG  L+ AD + IE R+LA ++
Sbjct: 606 DEGK-------------------------LIRKVFVPEEGHVLIDADYSQIELRILAHIS 640

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF+   D++  T A  F V  A VT + R+  K +   +              
Sbjct: 641 EDERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIV------------- 687

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                  A +              + ++
Sbjct: 688 -YGISD------------------------------YGLARDVKISRKEAAEFINKYFER 716

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           + +V E  +   +                              N  ++    R    +D+
Sbjct: 717 YPKVKEYLDNTVKFARD--------------------------NGFVLTLFNRKRYVKDI 750

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627
            +             R            +Q  + DI+   M+   +          I+L 
Sbjct: 751 KSTN---RNLRGYAERIAMNSP------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQ 801

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE++ E P  ++     +    M +    A  +PL  E  E   +
Sbjct: 802 VHDELLIEAPYEEKDIVKRIVKREMENAV--ALKVPLVVEVKEGLNW 846


>gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
 gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644]
          Length = 1040

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 105/721 (14%), Positives = 186/721 (25%), Gaps = 189/721 (26%)

Query: 31   ILFAFGFDDHPVELWDCVHDP---VMPQV-----LKEALENTDVTIVAHNSYFERTVLKA 82
            +  A   +      +  +  P   V+P       L   LEN  +   AH+      VLK 
Sbjct: 423  VGLALSSEPGRGWYFPFMGPPGATVIPAQTARDLLTPLLENPRIAWHAHDLKAHLRVLKR 482

Query: 83   CFNLDIPIHRWICTLVLARSNGLPSALK---AVGEA-LKLSSQKMEEGKELIARFCKGET 138
                 +        +VL+              + +  L  +  +  E             
Sbjct: 483  H-GWTLAGKGV-DPMVLSYLLESGERNHTAPELAKRFLNHTLSRPPEPNASATTTRSKPK 540

Query: 139  HECLYDRNKPNHR-------------------------------------------EAWR 155
                  R++                                                   
Sbjct: 541  ANPKRGRSRSQADASEETNPDDETPDVVGLPQTTGTPPRDGFLVFADDPHQDGPAAVPPE 600

Query: 156  LFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAH 205
                +       +  + + L              + E+ L  +   + + G  +D A   
Sbjct: 601  RLALWAVEWADASARLGQVLAQRVAAEGLERLYDTLERPLIEILADMEEAGVALDRARLR 660

Query: 206  TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQR 261
             L++      T L+++   L      +     +L+  LF   GL     T     +T Q 
Sbjct: 661  QLSRDFSARLTDLERQAHQLAG-EPFNLSSPPQLRVILFERLGLPPRGKTPKGEASTAQE 719

Query: 262  VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
            VL     L      +  +R    +     L+ L    + DGR+R T    G + TGR S 
Sbjct: 720  VLEELAALHQLPKVLLEHRR-IEKLKNTYLDALPNLTHPDGRIRATFNQ-GVTATGRLSS 777

Query: 322  CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVVA 379
                 QN+P  +                              VR   +A     + L+ A
Sbjct: 778  SEPNLQNIPVRTEEGR-------------------------QVRQAFVAGDPARQVLLTA 812

Query: 380  DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
            D + IE RVLA  + +   L+AFE   D++    A+ F VA   VT DQR + K +    
Sbjct: 813  DYSQIELRVLAHFSRDPALLRAFEEDRDIHADVAAKIFGVALDSVTSDQRRMAKTVNF-- 870

Query: 440  GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                            GL+                                  A      
Sbjct: 871  ------------GVIYGLS------------------------------AHGLASRLGIS 888

Query: 500  GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
             +       A+  ++  V      +      T                            
Sbjct: 889  QSEAAAFINAYFDQYPHVEAFMTRVLTQARDT--------------------------GR 922

Query: 560  LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT- 618
            +    GR      + +             R           ++Q  + D++   M+    
Sbjct: 923  VETLEGRRRAINGIKH---VEGRHRNLAERTAI------NTVIQGSAADLIKRAMIAVDQ 973

Query: 619  -----KAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
                 K    ++L +HDE++ E         A ++   M    +     PLK +      
Sbjct: 974  RLKETKLPARMILQIHDELLFEVERDALTETARLVQEAMIHAAT--LETPLKVDLAAGPN 1031

Query: 673  Y 673
            +
Sbjct: 1032 W 1032


>gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
 gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM
           11664]
          Length = 887

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 100/676 (14%), Positives = 204/676 (30%), Gaps = 140/676 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73
           L   G   +  D   + F+   +D          D  + +   +K  LE+  +     N 
Sbjct: 330 LEMLGANYHLADF--VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 380

Query: 74  YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            F+     V      +      +   L+ +      +    +GE   L        K  +
Sbjct: 381 -FDLKRSMVGAHRLGIHTHGLDY-DMLLASYLVNNENNSNDLGEIAHL--YGDYSVKTDL 436

Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
             + KG++     D ++  +  A +    E  K  +    +  ++     + E     + 
Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKDHEQDALFDTIEIPTARVL 496

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V  +    L     V+  +L+ ++ S       +    ++L   LF + GL
Sbjct: 497 ARMEMNGMKVKASTLIQLQNEFAVQLKELEDKIYSQAG-EKFNLNSPKQLGHILFEKLGL 555

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL   K  +P   ++ + R   ++     +  L++ +  DGR+  
Sbjct: 556 PVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 614

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P  +   +                          +R 
Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             +       +   D + +E RVLA ++G+Q   +AF+TG D++  T  + F++  P  V
Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPKDV 708

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R   K +                    G++    +                     
Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++ ++ +      +A ++  E G A       
Sbjct: 735 ----------NLGISRKRAKEFIDNYFEQYPQIRDYM---DKAVQEAREKGYAETIMH-- 779

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R     D+               R            +Q 
Sbjct: 780 ---------------------RRRYLPDIHAKNF---NVRSFAERTAINSP------IQG 809

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+   M+N  K          +VL VHDE++ + P  +      +   +M S    
Sbjct: 810 SAADIIKIAMINMQKKLEEMHLKTKMVLQVHDELIFDVPKDELETVKKIVPEVMQSAVR- 868

Query: 658 AKGLPLKAEGYESKRY 673
              +PL A+      +
Sbjct: 869 -LDVPLIADSGWGHNW 883


>gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
 gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016]
 gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112]
 gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3]
 gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A]
          Length = 888

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 92/644 (14%), Positives = 196/644 (30%), Gaps = 133/644 (20%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
            D + +      LK+ L++  V     N+  +   L     + +        L+ +    
Sbjct: 358 VDLLKEEP----LKDLLQSDSVKKNVFNAKAQIVGLHR-LGIPLENIN-FDLLLASYLLN 411

Query: 105 LPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                  L  V +       + +E           +      D    +H        E  
Sbjct: 412 TNDNSNDLGQVAQEHGYDDVRTDE----EVYGKGAKRAVPDDDETFFSHLATKARAIEQL 467

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + D+    +  K+    +  E  L  +   +   G  VD      +   +    ++++ +
Sbjct: 468 RKDLFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQ 527

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           +         +    ++L   LF +  L +   T+   +T   VL      +P   Q+  
Sbjct: 528 IYQEAG-EEFNINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQILE 586

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++     +  L++ ++S+ +   T      ++TGR S      QN+P        
Sbjct: 587 YRQ-IAKLQSTYITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGR- 644

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQW 397
                                    +R   + S EG ++  +D + +E RVLA + G++ 
Sbjct: 645 ------------------------LIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKN 680

Query: 398 KLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + F+ GED++ +T  R F++AP  ++ ++ R   K +   + Y               
Sbjct: 681 LQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGIS-----DYGLAQR 735

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++++         +   E+   + +         E+   +                    
Sbjct: 736 IHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETIT----------------- 778

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                                    +RR +P ++ K                        
Sbjct: 779 ------------------------HRRRYLPDIHAKSFNKRSF---------------AE 799

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
           R+ +NT                   +Q  + DI+   M+              ++L +HD
Sbjct: 800 RTAMNT------------------PIQGSAADIIKIAMIRMQDELEKRHLKAKMILQIHD 841

Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E P  +    S L   +M S       +PLK +      +
Sbjct: 842 ELVFEAPKEEIPVLSELVPKVMDSAVK--LDVPLKVDSKYGDTW 883


>gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
 gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47]
          Length = 891

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 94/682 (13%), Positives = 192/682 (28%), Gaps = 164/682 (24%)

Query: 31  ILFAFGFDDHPVELWDCVHD---------PVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
           +  AFG  D         +D             ++    LE+       +++ + + V  
Sbjct: 331 VGVAFGTTDGKTSYVPIDNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKYMKHVFA 390

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGET 138
               +++        ++ +       +    K     LK                   E 
Sbjct: 391 N-VGINLAGVS-DDVMLESYVLEAHRSHTIEKLAANWLKYE-------------LRGEEE 435

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------SKEQELWY 187
                 +     + +     E+    V +   + +  +                E  L  
Sbjct: 436 LLGKGAKKLSFSQVSVEKAAEFASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSD 495

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  +D  L       ++ +  +L+++   +           ++L   LF + 
Sbjct: 496 VLFKMEQNGVLIDTKLLDQQTAQLNTKARELEEQAFEVAG-ENFKLSSPKQLGEILFDKM 554

Query: 248 GL----HLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           G+         T     +T + VLS   +  P A      R   ++        L + ++
Sbjct: 555 GVVLEGAKPKKTISGNYSTSEEVLSELAENYPLAKIALEYR-TITKLVTTYTEKLPKMVD 613

Query: 300 S-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             DGR+  T +   A  TGR S      QN+P  +    +                    
Sbjct: 614 PKDGRVHTTFEQAVA-VTGRLSSTNPNLQNIPIRTEEGRK-------------------- 652

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                VR   I++ G KL+ AD + IE R++A ++ ++  ++AF+  ED++  T A  F 
Sbjct: 653 -----VREAFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFG 707

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               +VT + R I KV+                    G++                    
Sbjct: 708 KERDKVTPNDRRIAKVINF--------------GLMYGMSPFGL---------------- 737

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                         A          +     +  +   V +         ++  +     
Sbjct: 738 --------------AKNLGIGRDEAKNYINKFFARFPGVHDYMERTRALADR--QGYVET 781

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                     GR L   ++    +      R             
Sbjct: 782 TF------------------------GRRLWLPEIHAGGARRAAAER----------AAI 807

Query: 599 ENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASM-LYHLM 651
              +Q  + D++   M+   K          ++L +HDE++ E P+ +       L  +M
Sbjct: 808 NAPMQGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIM 867

Query: 652 TSNPSWAKGLPLKAEGYESKRY 673
            S       +PL AE      +
Sbjct: 868 DSVTE--LHVPLIAEVGVGDNW 887


>gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 437

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 75/446 (16%), Positives = 145/446 (32%), Gaps = 58/446 (13%)

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           N  ++R VL+    +++       T++ +          +V     + S      K    
Sbjct: 1   NLKYDRGVLQNY-GIELRGIA-FDTMLESYILN------SVAGRHDMDSLSDRWLK---H 49

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------- 182
           +    E            ++ A    G Y   D  VT ++  ++ P   +          
Sbjct: 50  KTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFEN 109

Query: 183 --QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
               L  +   +   G  +D A+ H  ++ + +   +L+++   +      +    ++L+
Sbjct: 110 IEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAG-EAFNLSSTKQLQ 168

Query: 241 TWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           T LF + G+     T     +T + VL       P    +   R   ++      + L  
Sbjct: 169 TILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYR-GLAKLKSTYTDKLPL 227

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +N       T      + TGR S      QN+P  +                       
Sbjct: 228 MINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRR------------------ 269

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R   IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  
Sbjct: 270 -------IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEV 322

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F +    VT +QR   K +   L Y   A        +  LN+         +   E + 
Sbjct: 323 FGLPLDSVTGEQRRSAKAINFGLIYGMSA-----FGLSRQLNIPRKEAQKYMDLYFERYP 377

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTA 502
               +    +    E    +   G  
Sbjct: 378 GVLEYMERTRAQAKEQGYVETLEGRR 403


>gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 894

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/679 (13%), Positives = 204/679 (30%), Gaps = 135/679 (19%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVA-H 71
           + K G+    E+  +I       D  +          +  +   L + +       +A  
Sbjct: 326 IEKIGLSIVREN-ELIAVGITLSDTEIYYIPVSGFVTESYLADRLSDVVSVASNRNIASA 384

Query: 72  NSYFERT-VLKACFNLDIPI---HRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEG 126
           N   +   + +       P+     +I T + A      + +        +  S      
Sbjct: 385 NIK-DYLDIFEKDKINGYPLVSEKAFIDTAIAAYLLHPSNESYDYESLGREFLSLTYPSK 443

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
            EL+ +    +      D            +  Y   D  +T ++         +  E+ 
Sbjct: 444 TELLGKLSINKAVNEAEDNLIKYAC--LSSYAYYKCAD-KITEQLKSENMYELFETIEMP 500

Query: 187 YLDQTINDR--GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
            +      +  G  VD       ++++  + + L++E+         +    ++L   LF
Sbjct: 501 LIFVLFEMQQQGISVDKQALVDYSKVLGTKISVLEKEIYEAAG-EEFNINSPKQLGVILF 559

Query: 245 LETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
              G+     T++   T   VL       P   ++   R   ++      + L + ++ D
Sbjct: 560 ERLGMPNGKKTKSGYSTAADVLEKLAPDYPVVSKILEYRQ-LAKLKSTYADGLTQYISED 618

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+ GT      + TGR S      QN+P      +                        
Sbjct: 619 GRIHGTFNQ-TITATGRISSTEPNLQNIPIRMEMGKA----------------------- 654

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +  +G   + AD + IE R+LA M+G++  ++A+ +  D++  T A+ F V  
Sbjct: 655 --IRKVFVPKDGFVFLDADYSQIELRILAHMSGDEKLIEAYNSSADIHRATAAQVFGVPL 712

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            +VT +QR   K +                    G++    +  +               
Sbjct: 713 EEVTDEQRRNAKAVNF--------------GIIYGMSSFGLSQDLSI------------- 745

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 +   + +   +  +    + L        E G ++   
Sbjct: 746 -----------------SRKEAKEYIERYFASYPTIKTFIDGL---VSDAKEKGYSLTMY 785

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                                   R     ++ ++     +      R            
Sbjct: 786 N-----------------------RRREIPEIKSSNFMQRSF---GERVAMNAP------ 813

Query: 602 VQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSN 654
           +Q  + DI+   M+N   A         ++L VHDE++ ET + +      +    M + 
Sbjct: 814 IQGTAADIIKLAMINVYNALKEHNLRSRLILQVHDELLVETAEDEVDTVKQIMLDGMKNA 873

Query: 655 PSWAKGLPLKAEGYESKRY 673
            S    +PL+ +  E K +
Sbjct: 874 VS--LKVPLEVDLKEGKDW 890


>gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002]
          Length = 850

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 86/629 (13%), Positives = 187/629 (29%), Gaps = 144/629 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGE 114
           ++E L++  V IV     ++   +    NL+    I      ++ +       +      
Sbjct: 350 IEEILKSDTVKIV-----YDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRS------ 398

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +L +  +      I    K +    +    +                D+   + ++  
Sbjct: 399 SYELETLFVSYLNTEIEAVRKDKKIVSVVLLKRLWDELLR-------LIDLNSCQFLY-- 449

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                + E+ L  +   +   G+ VD        + ++ +  KL+ ++  +      +  
Sbjct: 450 ----ENIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAG-EWFNIN 504

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF +  L +   T+   +T   VL            + + RM  ++      
Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMY-TKILTTYC 563

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++A+N       T      + TGR +      QN+P      +              
Sbjct: 564 QGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGK-------------- 609

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +   G  L+ AD + IE R+LA ++ ++  + AF+   D++  
Sbjct: 610 -----------LIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQ 658

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V  A VT + R+  K +   +                G++             
Sbjct: 659 TAAEVFGVDIADVTPEMRSQAKAVNFGIV--------------YGISD------------ 692

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                A +              + +++ +V E  +   +     
Sbjct: 693 ------------------YGLARDIKISRKEAAEFINRYFERYPKVKEYIDNTVKFARD- 733

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                    N  ++    R    +D+ +             R  
Sbjct: 734 -------------------------NGFVLTLFNRKRYIKDIKSTN---RNLRGYAERIA 765

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+   M+   +          I+L VHDE++ E P  ++    
Sbjct: 766 MNSP------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVK 819

Query: 646 MLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            +    M +  +    +PL  E  E   +
Sbjct: 820 EIVKREMENAVT--LKVPLVVEVKEGLNW 846


>gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 876

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 96/686 (13%), Positives = 196/686 (28%), Gaps = 151/686 (22%)

Query: 14  IDLTKCGICKYAED-----VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
            DL++  I    ++       ++ F    D H V + +       P+ L E LEN     
Sbjct: 312 NDLSEASIHFEVDEGDYLTADILKFGIQADGHFV-VINAEQINDYPE-LVEWLENDQTRK 369

Query: 69  VAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAV-GEALKLSSQKMEEG 126
             +++            L+I I       ++ +       ++  V               
Sbjct: 370 RVYDAK---KTYAEAHRLNIDIKNVSFDIMLASYILDPSRSIDDVYSVVHNYGQ------ 420

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--TVTREIFKRLEPLSSKEQ- 183
                   +         + +    E    +      D     T  ++ +LE  +  +  
Sbjct: 421 ----NYVAEEVNIYGKGRKRQIPEDEVLDTYIA-SILDAISESTPIMYDQLEEFNQLDLF 475

Query: 184 -----ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
                 L  +   + + G   DV     + + +  +   L   +         +    ++
Sbjct: 476 ESLELPLARILGEMEELGIYTDVDELKEMEKEIQGKLDTLITRIHDAAG-EDFNINSPKQ 534

Query: 239 LKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           L   LF    L +   T+   +T   VL   +   P    +   R   S+     +  L 
Sbjct: 535 LGVVLFENLKLPVIKKTKTGYSTAVDVLEQLQGEHPIIDDILEYRQ-LSKLQSTYIEGLQ 593

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           + + +D R+        A +TGR S      QN+P                         
Sbjct: 594 KVIQNDHRIHTHFNQTLA-QTGRLSSVDPNLQNIPVRLEEGRR----------------- 635

Query: 356 PLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   +R        G  ++ AD + IE RVLA +  ++  +KAF  G D++  T  
Sbjct: 636 --------IRKAFKPAEPGNVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAM 687

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + F V P +V    R   K +   + Y            +  L +   A     +   + 
Sbjct: 688 KVFGVEPDEVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKAAKQFIDDYLDS 742

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           +   + +   + ++       +                                      
Sbjct: 743 FPGVKQYMSDIVKDAKAKGYVETL------------------------------------ 766

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                  +RR +P +  +                        R+ +NT            
Sbjct: 767 -----LHRRRYIPDITSRNFNRRSF---------------AERTAMNT------------ 794

Query: 595 GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SML 647
                  +Q  + DI+   M+N  K          ++L VHDE++ E P+ +     + +
Sbjct: 795 ------PIQGSAADIIKLAMVNFDKEIKNKDFHAHLLLQVHDELIFELPEEEVEAFSAFI 848

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673
             +M +       +PL+ +      +
Sbjct: 849 EDIMDNAID--LDVPLQVDTNYGPTW 872


>gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico]
 gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia]
          Length = 853

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 86/665 (12%), Positives = 181/665 (27%), Gaps = 158/665 (23%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
                D  +   +  +D                   ++ L +  V  + H    +  ++ 
Sbjct: 327 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 382

Query: 82  ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
             F     +  +   ++++ S        +L  +                L+        
Sbjct: 383 RHF---PDLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQKFPARLACTLVQLHGVMRN 439

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
                                           + +        E+ L  +   + + G  
Sbjct: 440 K-----------------------------LLLDRLFTVYYQLERPLVRVLYEMQEIGVE 470

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLED 253
           VD  +   L+Q        L++E+  L      +     +L   LF   GL      +  
Sbjct: 471 VDTEILKQLSQDFHGSIRSLEKEIYDLAGCK-FNVASARQLGKLLFERMGLSSSAKKMPS 529

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            + +T   VL+       +           S+     ++ L+  + +  +   T   + +
Sbjct: 530 GSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMIS 589

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR S      QN+P  S+   E                         +R   +A EG
Sbjct: 590 TATGRISSSNPNLQNIPIRSKEGTE-------------------------IRKAFVAREG 624

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            KLV AD + +E +++A +AG Q    AF  G+D+++ T  + F         + R   K
Sbjct: 625 HKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD--PELRRRAK 682

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A  V                           
Sbjct: 683 SINFG--------------IIYGMSPFGLAKNV--------------------------- 701

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                      +    + + +  +      +     +                       
Sbjct: 702 ---GITRQEASQYVAQYFRSYPEIKNYMEAIKAYARK----------------------- 735

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                      GR      + + +   +T      R            +Q  + D++ + 
Sbjct: 736 ---YGYTRTAFGRKCYISGINSEQ---HTVRGFAERAAINAP------IQGTAADVVKKA 783

Query: 614 MMNATKA---GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYE 669
           M+N       G  I+L VHDE++ E P++     + L   +M    ++   +PLK +   
Sbjct: 784 MINLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIGV 840

Query: 670 SKRYR 674
              + 
Sbjct: 841 GSSWG 845


>gi|332967876|gb|EGK06971.1| DNA-directed DNA polymerase I [Desmospora sp. 8437]
          Length = 881

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 101/688 (14%), Positives = 202/688 (29%), Gaps = 141/688 (20%)

Query: 9   ET-RSPIDLTKCGICKYAE-------DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           ET      L + G+  + E          V+  A    D   +L+            ++ 
Sbjct: 308 ETKNWDEWLAQDGLALFLEMSGENYHRAEVL--AVALSDGKKQLFLEWGTAREWPGFRQW 365

Query: 61  LENTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           L + D T V     ++     V      L+     W   L+ +       +   + E   
Sbjct: 366 LRDPDRTKVC----YDVKATEVALKHQGLETDGFAW-DILLSSYLINASESGHELSEI-- 418

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +  +      +  A + KG        +    H           +  +    +       
Sbjct: 419 VDRKWGGGLPDDDAVYGKGVKRRRPEGKELAEHLARKARAIHRLQPLLEEELKENGLDSL 478

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   +  +G  VD     +L + +     +L +++  L      +    +
Sbjct: 479 YLDLELPLARVLAKMEWQGVQVDRDRLQSLGEELKGRLEELTEKIFELAGT-EFNINSPK 537

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF + GL +   T+   +T   VL           ++ + R    +     +  L
Sbjct: 538 QLGEILFDKLGLPVLKKTKTGYSTSADVLEKLAPQHEIVEEILHYRQ-VGKLISTYVEGL 596

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           ++ ++   G++        A+ TGR S      QN+P                       
Sbjct: 597 LKEIDGETGKIHTRFNQAIAA-TGRLSSTDPNLQNIPIRLEEGRR--------------- 640

Query: 354 PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +   E   ++ AD + IE RVLA ++G++  ++AF+   D++  T
Sbjct: 641 ----------IRQVFVPSEEEWLMLSADYSQIELRVLAHLSGDENLIEAFQKELDVHTKT 690

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
               F V+  +VT   R   K +   + Y            +  LN+             
Sbjct: 691 AMDVFGVSADEVTPWMRRHAKAVNFGIVYGIS-----DYGLSQNLNIPRKEAAEFIQRYF 745

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
           + +   + +   +                                               
Sbjct: 746 DSYPGVKRYMEDIVRQAKADGYVTTM---------------------------------- 771

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                    +RR++P +  +                        R+ +NT          
Sbjct: 772 -------LHRRRELPEINSRNFNRRSF---------------AERTAMNTP--------- 800

Query: 593 YGGKLTENIVQAVSRDILAEGMMN----ATKAG--YDIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + DI+ + M+       K G    ++L VHDE++ ETP  +      
Sbjct: 801 ---------IQGTAADIIKKAMVEMDSVLEKEGLRARLLLQVHDELIFETPAEEMEALDN 851

Query: 647 LY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           L   +M S    A  +PL+ +    K +
Sbjct: 852 LVRRVMESAVELA--VPLQVDINTGKTW 877


>gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1]
          Length = 831

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 99/610 (16%), Positives = 184/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL     LD+P       ++LA      +   + V         +    + L+A   
Sbjct: 354 DLAVLALREGLDLPPS--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAQRALLAER- 410

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                     +N     E                  +++ +E   S       +   +  
Sbjct: 411 --------LQQNLLERLEGEEKL-----------LWLYREVEKPLS------RVLAHMEA 445

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253
            G  +DVA    L+  V+ E  +L++E+  L      +    ++L+  LF E  L  L  
Sbjct: 446 TGVRLDVAYLKALSLEVEAELKRLEEEVYRLAGHP-FNLNSRDQLERVLFDELKLPALGK 504

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
             +    +T   VL + ++  P   ++  +R   S+     ++ L   ++   GRL    
Sbjct: 505 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELSKLKSTYIDPLPGLVHPRTGRLHTRF 563

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 564 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 597

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A EG  LV  D + IE RVLA ++G++  ++ F  G+D++  T +  F V    V    
Sbjct: 598 VAEEGFLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRM 657

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 658 RRAAKTVNF--------------GVLYGMS------------------------------ 673

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E            + + Q   +V      + +  E   + G             
Sbjct: 674 AHRLSQELAIPYEEAVAFIERYFQSFPKVRAW---IEKTLEGGRQRGYVETL-------- 722

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 723 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 758

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE++ E P       + L   +M      A  +PL
Sbjct: 759 LMKLAMVKLFPRLKETGARMLLQVHDELLLEAPKDRAEAVAALAKEVMEGVYPLA--VPL 816

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 817 EVEVGIGEDW 826


>gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
 gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida]
          Length = 864

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 86/665 (12%), Positives = 181/665 (27%), Gaps = 158/665 (23%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
                D  +   +  +D                   ++ L +  V  + H    +  ++ 
Sbjct: 338 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 393

Query: 82  ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGET 138
             F     +  +   ++++ S        +L  +                L+        
Sbjct: 394 RHF---PDLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQKFPARLACTLVQLHGVMRN 450

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
                                           + +        E+ L  +   + + G  
Sbjct: 451 K-----------------------------LLLDRLFTVYYQLERPLVRVLYEMQEIGVE 481

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLED 253
           VD  +   L+Q        L++E+  L      +     +L   LF   GL      +  
Sbjct: 482 VDTEILKQLSQDFHGSIRSLEKEIYDLAGCK-FNVASARQLGKLLFERMGLSSSAKKMPS 540

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            + +T   VL+       +           S+     ++ L+  + +  +   T   + +
Sbjct: 541 GSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMIS 600

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR S      QN+P  S+   E                         +R   +A EG
Sbjct: 601 TATGRISSSNPNLQNIPIRSKEGTE-------------------------IRKAFVAREG 635

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            KLV AD + +E +++A +AG Q    AF  G+D+++ T  + F         + R   K
Sbjct: 636 HKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD--PELRRRAK 693

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A  V                           
Sbjct: 694 SINFG--------------IIYGMSPFGLAKNV--------------------------- 712

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                      +    + + +  +      +     +                       
Sbjct: 713 ---GITRQEASQYVAQYFRSYPEIKNYMEAIKAYARK----------------------- 746

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                      GR      + + +   +T      R            +Q  + D++ + 
Sbjct: 747 ---YGYTRTAFGRKCYISGINSEQ---HTVRGFAERAAINAP------IQGTAADVVKKA 794

Query: 614 MMNATKA---GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYE 669
           M+N       G  I+L VHDE++ E P++     + L   +M    ++   +PLK +   
Sbjct: 795 MINLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIGV 851

Query: 670 SKRYR 674
              + 
Sbjct: 852 GSSWG 856


>gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779]
          Length = 953

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 116/709 (16%), Positives = 212/709 (29%), Gaps = 159/709 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------VMPQV 56
           L  D ET S    +            V+  A              H          +   
Sbjct: 355 LIFDVETNSLNLFSPVP-------AKVVGIALTHTAGCGWYIPLGHRSGQQLPIAEVVAA 407

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+    +    +VAHN  F+ + L     LD+P      T + A   G   +LK +  A 
Sbjct: 408 LQPLFSDPQKAVVAHNGKFDMSALS-LIGLDVPHLS-FDTAIAAALLGKRQSLKDLAFAE 465

Query: 117 KLSSQ----KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              +     +M   + LI              +     + A      Y   DV +T  + 
Sbjct: 466 LRDADDRPIEMTRIETLI----------GTGKKQITMDQVAIEQVTPYASADVDMTARLL 515

Query: 173 KRLEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
               P               E  L  +   +   G  +D A      Q++     +++Q 
Sbjct: 516 ALFMPQLGAIPAVREVFEQIEMPLSPVLMRMEACGIGLDRAQLVQQGQVLGQSLREIEQH 575

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT------------ETTCQRVLSSN--K 267
           +         +      L   LF+   L   +L              +     L      
Sbjct: 576 IADFVG-EPLNINSRFDLNDLLFIRLKLPTANLKRLAGTTRSGGAVYSVNAETLEDLQTH 634

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPP 326
             +     +   R   S+     ++ L+E +N   GR+    + +GA  TGR S      
Sbjct: 635 DQSGIVAMILRYRR-LSKLKSTYVDALIELINQQTGRVHTQYRQIGAE-TGRLSSDSPNL 692

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  S    E                         +R   +A  G  L+ AD + IE 
Sbjct: 693 QNIPVRSEEGRE-------------------------IRRAFVARPGHVLMTADYSQIEL 727

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA +  +   ++ F+TG+D++  T AR F++   +V+K+QR I K+    + Y     
Sbjct: 728 RVLAHITADPALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVFGIIYGIS-- 785

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                       L+        N    ++   +++     E        +   G      
Sbjct: 786 ---SFGLAARTALSRTEAQQMINGLFAQYPGLKSYIERTLERVKAVGYVETLFGR----- 837

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + + ++                  +++G     R+         +++  N  +   +  
Sbjct: 838 -RRYFRE------------------LQDGGVTGPRRS------AFEREATNAGIQGTAAD 872

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
            +    +            +L +    GG   + ++Q                       
Sbjct: 873 LIKLAMI------------RLEQALIAGGYQAKMLLQ----------------------- 897

Query: 627 TVHDEIVCETPDTDEFNASMLY-HLMTSN-PSWAKGLPLKAEGYESKRY 673
            VHDE+V E P+ +    + L    MT   P  A  +PL+        +
Sbjct: 898 -VHDELVLEVPEDERDAVAQLVCDTMTQVYPDLA--VPLEVNVETGLNW 943


>gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 867

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 93/677 (13%), Positives = 208/677 (30%), Gaps = 147/677 (21%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77
                    +  V   +F  DD    +       V    + + L+N  +T++ H+   + 
Sbjct: 313 TLSFYPLILEGEVKAVSFATDDESFFV------EVDDYEVFKLLDNEKLTLIGHDIK-DF 365

Query: 78  TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
            V  +   +++   ++  T ++        +   +G  LK         K L       E
Sbjct: 366 FVNLSYHGIELNC-KFYDTAIMTYLLNPSESNYDIGRVLK---------KYLKEDIPNIE 415

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWY 187
                    K       +L  +Y     +   ++  +L     +             L  
Sbjct: 416 DMLGKGKSKKSYDDIDKKLLIDYLCATASKLSKLKDKLMSFIKEMEMEELLDNVELPLVE 475

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           + +++   G+ +D  +   L++ +  +  K+ +++         +    ++L  +LF + 
Sbjct: 476 VLKSMEVYGFTLDKDVLKDLSKEIGEKTDKIIKDIYDAAGY-EFNINSTKQLSEFLFDKL 534

Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            L     T+   +T   VL           ++   R    +     ++  +  M+ D ++
Sbjct: 535 NLPPIKKTKTGYSTDMEVLVELIPYNEIVGEIIEYRQ-LMKLKSTYIDGFMPIMDKDDKV 593

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             T +   A+ TGR S      QN+P                                 +
Sbjct: 594 HSTFKQTVAA-TGRISSTEPNLQNIPVRDEFGRR-------------------------I 627

Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           R   I+S +G  +V AD + IE RVLA ++ +   +++F   ED+++ T +  F +AP +
Sbjct: 628 RKAFISSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPEE 687

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +   + Y            +  L ++        ++  + ++  +N+  
Sbjct: 688 VTGEMRRRAKAVNFGIVYGIS-----DYGLSRDLKISRKEAKEYIDNYFDRYKGVKNYID 742

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
            + +   E+                                                 +R
Sbjct: 743 SVVKFARENGYVTTI-----------------------------------------LNRR 761

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R +P +  K                                    R            +Q
Sbjct: 762 RYIPEINSKNYNQRSFGE---------------------------RMAMNTP------IQ 788

Query: 604 AVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPS 656
             + DI+   M+              ++L +HDE++ +T   +      +L  +M +   
Sbjct: 789 GSAADIIKMSMVKVYNELKSRSLKSKLILQIHDELIVDTFPDEVEIVKNLLKTIMENVIK 848

Query: 657 WAKGLPLKAEGYESKRY 673
               +PL  +    K +
Sbjct: 849 --LRVPLVVDIGYGKNW 863


>gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg]
 gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg]
          Length = 994

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 96/678 (14%), Positives = 193/678 (28%), Gaps = 148/678 (21%)

Query: 19  CGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYF 75
            GI    E+  ++  +  +      +  C        +   L   LE      +     F
Sbjct: 438 VGIKLIMENKSLVGISVYYGSEASFIIPCEGFITPDFLTSKLNGLLEKKITLAI-----F 492

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
           +        N +          +        ++          + +     ++ +     
Sbjct: 493 DIKKYLPYLNAN-EESPCFDVTIAGYLLEPDAS----------TYEYQTIAEKYLELDLP 541

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQEL 185
            E                   + +    +  V   I+  L  L S           E  L
Sbjct: 542 SEKEVFSGQTYASLSLLDQDQYKKAACYESYVAHHIYPVLLKLLSERGLLPLFAGIEMPL 601

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
            Y    +  RG  VD       +  + V   +L++++  L      +    ++L   LF 
Sbjct: 602 VYTLYDMEQRGIRVDTNGLKDYSDQLGVSIVELEKQIFELVGV-EFNINSPKQLGEILFQ 660

Query: 246 ETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
             GL     T+   +T   VL       P    +   R   ++      + LV  +  DG
Sbjct: 661 RLGLSYGKKTKTGYSTSAEVLEKLSSEHPVIKLILQYRQ-LTKLKSTYADGLVSYVEGDG 719

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           R+ GT     A+ TGR S      QN+P       +                        
Sbjct: 720 RIHGTFNQTIAA-TGRLSSTEPNLQNIPIRMELGRK------------------------ 754

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   I  +G   + AD + IE R+LA M+ +   ++A+   +D++  T +  F+    
Sbjct: 755 -IRKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASEVFHTPFD 813

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT  QR+  K +   +                G++  +                     
Sbjct: 814 EVTSAQRSNAKAVNFGIV--------------YGISSFSL-------------------- 839

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                       +        E     +   +  V    + L +  ++T           
Sbjct: 840 ----------GQDLDITRKEAEEYINKYFMTYPGVKTYLDGLIEEGKET----------- 878

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                           ++    GR     ++ N+     +      R            +
Sbjct: 879 ---------------GVVKTLYGRIRPVPNLTNSNFMKRSAE---ERIAMNSP------I 914

Query: 603 QAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655
           Q  + DI+   M++        K    ++L +HDE++ ET +++    + +    M    
Sbjct: 915 QGTAADIMKLAMIHVNQVLKERKLKSRLLLQIHDELLVETHESEVEEVAKIMKEEMQQAA 974

Query: 656 SWAKGLPLKAEGYESKRY 673
           S    +PL+ E      +
Sbjct: 975 S--LSVPLEVEVANGNNW 990


>gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium pseudotuberculosis I19]
          Length = 886

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 100/667 (14%), Positives = 192/667 (28%), Gaps = 139/667 (20%)

Query: 23  KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLK 81
               D   +  A       V   D        +  L + L +       H +     +L 
Sbjct: 338 PATGDAEAL--AIADKQRHVIAVDLSDIDPQDEKALAQWLRSET-PKYLHEAKATFHMLS 394

Query: 82  ACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                   ++     T + A           +         K    + L  +    ET  
Sbjct: 395 ---GRGFELNGVAHDTAIAAYLLRPGQRTYDL---------KDVYQRHLQRQLSGDETQG 442

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYC 198
            L   + P+  E         +    +T+++         ++ EL    +   +   G  
Sbjct: 443 QLSLLDAPDSEELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIA 502

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           VDV       ++      + +    ++      +    ++L+  LF   GL     T+  
Sbjct: 503 VDVETLEEQLKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTG 562

Query: 257 -TTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
            +T  + + +     P              +     L  L++A+ SDGR+  T     A 
Sbjct: 563 YSTAAKEIEALAVKHPDPFLDHLLAHRENQKLKTT-LEGLIKAVGSDGRIHTTFNQTVA- 620

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S      QN+P  ++                             +RS  +  EG 
Sbjct: 621 STGRLSSTEPNLQNIPVRTQDGRR-------------------------IRSAFVVGEGY 655

Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L+ AD + IE RV+A ++ +   ++A+  GEDL+    +R F V   QVT + R   K
Sbjct: 656 ETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHNYVGSRVFEVPVDQVTPELRRRVK 715

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            M   L                GL+                                   
Sbjct: 716 AMSYGLV--------------YGLS------------------------------AFGLG 731

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
            +        +++  ++ ++   V +  + + +   +                       
Sbjct: 732 QQLNIPAGEAKQIMTSYFERFGGVKQYLDNVVEQARK----------------------- 768

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
              +       GR     ++G++            R            +Q  + DI+   
Sbjct: 769 ---DGFTSTLFGRRRYLPELGSDN---RVARENAERAALNAP------IQGTAADIIKVA 816

Query: 614 MMNAT----KAG--YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
           M+       KAG    ++L VHDE+V E    +      +    M +  S    +PL+  
Sbjct: 817 MIRVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAAIS--LRVPLEVS 874

Query: 667 GYESKRY 673
                 +
Sbjct: 875 AGSGPNW 881


>gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
 gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC
           27755]
          Length = 875

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 86/667 (12%), Positives = 183/667 (27%), Gaps = 153/667 (22%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVL 80
           +A +  +      FD+      +         + + L +  E+    +      F+    
Sbjct: 341 FANEAAIGGIGLCFDEEHAYCIEVTEQITKEFLLEKLSKLNESCGRFV-----MFDIKEA 395

Query: 81  KACFNLDIPIHRWICTLVLARSNGL---PSALKAVG-EALKLSSQKMEEGKELIARFCKG 136
                +           V A            + V  E L +    +EE  E   + C  
Sbjct: 396 MKWLPIK-NQKHCFDATVAAYLLNPLKNDYTYEDVAREQLNI---VIEEKSEAYVKVCYE 451

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                          E  +               +F         E  L +    +   G
Sbjct: 452 AYTAFKGSDLLYKKLEETQ------------MLHLF------EDIEMPLVFTLYDMERNG 493

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
              +       +  +    ++L++E+  +      +    ++L   LF +  L     T+
Sbjct: 494 IRAEGEALKVYSSQLGGRISELEKEIYEMAG-ESFNINSPKQLGVILFEKLLLPGSKKTK 552

Query: 257 T---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
           +   T   VL       P   +V   R   ++      + LV  +  DGR+         
Sbjct: 553 SGYSTAASVLDKLAPDYPIVSKVLEYRQ-LTKLKSTYADGLVNYIEEDGRIHSKFNQ-TI 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR S      QN+P                                 +R   +  +G
Sbjct: 611 TATGRISSTEPNLQNIPVRVELGR-------------------------LIRKVFVPEDG 645

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
              V AD + IE RVLA  +G+   ++A+   +D++  T ++ F++   +VT  QR   K
Sbjct: 646 YIFVDADYSQIELRVLAHCSGDANLIEAYREEKDIHRITASQVFHIPFEEVTPLQRRNAK 705

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y            +  L+                                   
Sbjct: 706 AVNFGIVYG-----ISSFGLSEDLS----------------------------------- 725

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                      +  + + + +  +    ++     ++                       
Sbjct: 726 ----IGRKEAAKYIEDYFKTYPGIKTFLDDTVAHAKE----------------------- 758

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 ++   GR     ++ ++     +      R            +Q  + DI+   
Sbjct: 759 ---MGYVVTLFGRRRPVPELSSSNFMQRSF---GERVAMNAP------IQGTAADIMKIA 806

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           M+   +          +VL VHDE++ E    +      +    M    S    +PL+ +
Sbjct: 807 MIGVNRRLKEQNLKSRLVLQVHDELLIEAYRPELPEVEKILREEMEQAAS--LDVPLEID 864

Query: 667 GYESKRY 673
            +  + +
Sbjct: 865 MHTGENW 871


>gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
 gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785]
          Length = 886

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 100/665 (15%), Positives = 206/665 (30%), Gaps = 145/665 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL- 86
           +  F+    +          DPV+ Q   L++ LE+  +     N  F+    +    L 
Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENPLRKMLEDKTIKK---NV-FDIK--RTYVGLH 391

Query: 87  --DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             ++         L+ +      +    +GE   L        K  +  + KG+      
Sbjct: 392 RLNLKAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDD--YSVKTDLEVYGKGKKQAVPD 449

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDV 201
           D     H  A     E  K    +  ++    +    +  E+    +   +   G  V+ 
Sbjct: 450 DNEFFEHLAAKVAVIE--KLKTPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
           ++ + L     V+  +L+ ++         +    ++L   LF + GL     T+   +T
Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLGLPPIKKTKTGYST 566

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   K  +P   ++ + R   ++     +  L+E +  DGR+         + TGR
Sbjct: 567 SVEVLEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLECIQPDGRIHTRYLQ-TLTATGR 624

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKL 376
            S      QN+P  +   +                          +R   +    +G   
Sbjct: 625 LSSVDPNLQNIPTRTNEGK-------------------------QIRKAFVPSTKDGYIF 659

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435
              D + +E RVLA ++G++   +AF++G D++  T  + F++  P +VT   R   K +
Sbjct: 660 -SCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 719 NF--------------GIVYGISDYGLSK------------------------------N 734

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                   +   + + +++ ++    ++   A ++  ENG A                  
Sbjct: 735 LGISRKQAKTFIENYFEQYPQIKNYMDD---AIKKARENGYAETIMH------------- 778

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                     R     D+ +             R            +Q  + DI+   M+
Sbjct: 779 ----------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMI 819

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
           N  K          +VL VHDE++ + P  +      +   +M S       +PL A+  
Sbjct: 820 NMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSN 877

Query: 669 ESKRY 673
               +
Sbjct: 878 WGHNW 882


>gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct]
 gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct]
          Length = 829

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 352 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 392

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 393 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 443

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 444 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 502

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 503 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 561

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 562 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 595

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 596 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 655

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 656 RRAAKTINF--------------GVLYGMS------------------------------ 671

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +   + + Q   +V      + +  E+    G             
Sbjct: 672 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 720

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 721 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 756

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 757 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 814

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 815 EVEVGIGEDW 824


>gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq
           polymerase 1
 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
 gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New
           Orientation For The Structure-Specific Nuclease Domain
 gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
 gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus]
          Length = 832

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 396 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 447 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 505

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 506 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 564

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 598

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 659 RRAAKTINF--------------GVLYGMS------------------------------ 674

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +   + + Q   +V      + +  E+    G             
Sbjct: 675 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 723

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 724 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 759

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 760 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 817

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 818 EVEVGIGEDW 827


>gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
 gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242]
          Length = 833

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 356 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 396

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 397 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 447

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 448 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 506

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 507 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 565

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 566 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 599

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 600 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 659

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 660 RRAAKTINF--------------GVLYGMS------------------------------ 675

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +   + + Q   +V      + +  E+    G             
Sbjct: 676 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 724

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 725 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 760

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 761 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 818

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 819 EVEVGIGEDW 828


>gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41]
 gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231]
 gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002]
          Length = 886

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 100/667 (14%), Positives = 192/667 (28%), Gaps = 139/667 (20%)

Query: 23  KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLK 81
               D   +  A       V   D        +  L + L +       H +     +L 
Sbjct: 338 PATGDAEAL--AIADKQRHVIAVDLSDIDPQDEKALAQWLRSET-PKYLHEAKATFHMLS 394

Query: 82  ACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                   ++     T + A           +         K    + L  +    ET  
Sbjct: 395 ---GRGFELNGVAHDTAIAAYLLRPGQRTYDL---------KDVYQRHLQRQLSGDETQG 442

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYC 198
            L   + P+  E         +    +T+++         ++ EL    +   +   G  
Sbjct: 443 QLSLLDAPDSEELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIA 502

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           VDV       ++      + +    ++      +    ++L+  LF   GL     T+  
Sbjct: 503 VDVETLEEQLKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTG 562

Query: 257 -TTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
            +T  + + +     P              +     L  L++A+ SDGR+  T     A 
Sbjct: 563 YSTAAKEIEALAVKHPDPFLDHLLAHRENQKLKTT-LEGLIKAVGSDGRIHTTFNQTVA- 620

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S      QN+P  ++                             +RS  +  EG 
Sbjct: 621 STGRLSSTEPNLQNIPVRTQDGRR-------------------------IRSAFVVGEGY 655

Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L+ AD + IE RV+A ++ +   ++A+  GEDL+    +R F V   QVT + R   K
Sbjct: 656 ETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHNYVGSRVFEVPVDQVTPELRRRVK 715

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            M   L                GL+                                   
Sbjct: 716 AMSYGLV--------------YGLS------------------------------AFGLG 731

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
            +        +++  ++ ++   V +  + + +   +                       
Sbjct: 732 QQLNIPAGEAKQIMTSYFERFGGVKQYLDNVVEQARK----------------------- 768

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
              +       GR     ++G++            R            +Q  + DI+   
Sbjct: 769 ---DGFTSTLFGRRRYLPELGSDN---RVARENAERAALNAP------IQGTAADIIKVA 816

Query: 614 MMNAT----KAG--YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
           M+       KAG    ++L VHDE+V E    +      +    M +  S    +PL+  
Sbjct: 817 MIRVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAAIS--LRVPLEVS 874

Query: 667 GYESKRY 673
                 +
Sbjct: 875 AGSGPNW 881


>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
          Length = 832

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 396 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 447 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 505

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 506 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 564

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 598

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 659 RRAAKTINF--------------GVLYGMS------------------------------ 674

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +   + + Q   +V      + +  E+    G             
Sbjct: 675 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 723

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 724 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 759

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 760 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 817

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 818 EVEVGIGEDW 827


>gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
 gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4]
          Length = 934

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 98/658 (14%), Positives = 193/658 (29%), Gaps = 149/658 (22%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHR 92
               DD+   L D          +++AL++  +    H    +   L        + I  
Sbjct: 406 GLAADDNTALLLDLNAPEATA--IRDALKDPALPKTTH----DLKSLLHTAGQRGLEIAN 459

Query: 93  W-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                ++ +           L  V   +                      ++       P
Sbjct: 460 VAHDVMLYSYLINPTHGSHKLADVAARMG-------------QSITPLVKNQTPPATALP 506

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
               A        +       E+   L+P    +  L  +   +   G  +D  +   ++
Sbjct: 507 EAASAIHRLAPALRIQAE-EGEL---LKPYEEIDLPLVPVLLRMEQVGCRIDSQVLRDMS 562

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TE--TTCQRVL 263
             + V+   L + + +++     +    ++L   LF +  L         +  +T Q VL
Sbjct: 563 SKLAVDMDALAERIYAMSGHR-FNINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQDVL 621

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                       V   R   ++        L +  + +GR+  T   +G + TGR S   
Sbjct: 622 EELAAHHEAPALVLEYRQ-LAKLRSNYTEQLPQLADREGRVHTTFNQVG-TATGRLSSTN 679

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  +    E                         +R+  I +EG  L+ AD + 
Sbjct: 680 PNLQNIPTRTALGRE-------------------------IRAAFIPAEGNVLLSADYSQ 714

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A  + +   L A+ TG+D++  T A  F V P  + K+ R   K +   +    
Sbjct: 715 IELRLMAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFGIV--- 771

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++    A                                        
Sbjct: 772 -----------YGISPFGLAAQ------------------------------LGIPQGEA 790

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +   + +R++++ V+     + +    T   GK                           
Sbjct: 791 KLYIERYRERYAGVTAF---IERTISDTRSTGKVSTL----------------------- 824

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618
            GR+    D+G+             R            +Q  + D++   M+        
Sbjct: 825 FGRTRPIPDIGSRNP---NQRGFAERTA------VNTPLQGTAADMIKIAMLKIDAALTE 875

Query: 619 -KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674
            K    + L VHDE++ + P  +    + L  L M    S    +P+ AE  +   +R
Sbjct: 876 RKLATRMTLQVHDELLFDAPVGETEEVAALVKLEMEGVVS--LSIPIVAEVGKGPNWR 931


>gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi]
          Length = 850

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 90/663 (13%), Positives = 185/663 (27%), Gaps = 154/663 (23%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
                D  +   +  +D                   ++ L +  V  + H    +  ++ 
Sbjct: 324 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 379

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIARFCKGETHE 140
             F     +  +   ++++ S    S   ++   A +   QK           C      
Sbjct: 380 RHF---PDLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQKFPA-----RMACTLVQLH 431

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
            +                            +F         E+ L  +   + + G  VD
Sbjct: 432 GVMRNKLLLD-------------------RLFTVYY---QLERPLVRVLYEMQEIGVEVD 469

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLT 255
             +   L+Q        L++E+  L      +     +L   LF   GL      +   +
Sbjct: 470 TEILKQLSQDFHGSIRSLEKEIYDLAGCT-FNVASARQLGKLLFERMGLSSSAKKMPSGS 528

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL+       +           S+     ++ L+  + +  +   T   + ++ 
Sbjct: 529 YSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTA 588

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  S+   E                         +R   +A EG K
Sbjct: 589 TGRISSSNPNLQNIPIRSKEGTE-------------------------IRKAFVAREGHK 623

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           LV AD + +E +++A +AG Q    AF  G+D+++ T  + F         + R   K +
Sbjct: 624 LVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD--PELRRRAKSI 681

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    A  V                             
Sbjct: 682 NFG--------------IIYGMSPFGLAKNV----------------------------- 698

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                    +    + + +  +      +     +                         
Sbjct: 699 -GITRQEASQYVAQYFRSYPEIKSYMEAIKAYARK------------------------- 732

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                    GR      + + +   +T      R            +Q  + D++ + M+
Sbjct: 733 -YGYTRTAFGRKCYISGINSEQ---HTVRGFAERAAINAP------IQGTAADVVKKAMI 782

Query: 616 NATKA---GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESK 671
           N       G  I+L VHDE++ E P++     + L   +M    ++   +PLK +     
Sbjct: 783 NLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIGVGS 839

Query: 672 RYR 674
            + 
Sbjct: 840 SWG 842


>gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A]
          Length = 850

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 89/647 (13%), Positives = 188/647 (29%), Gaps = 147/647 (22%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI--PIHRWICT 96
           D          D  + + +   L++  V IV     ++   +    NL     I      
Sbjct: 335 DQESNTVFVTRDRHLVEEI---LKSDTVKIV-----YDLKNIFHQLNLKDTDNIKNCEDV 386

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           ++ +              + +L +  +      I    K +    +    +         
Sbjct: 387 MIASYVLDSTRG------SYELETLFVSYLNTDIEAVRKDKKIVSVVLLKRLWDELLR-- 438

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
                  D+   + ++       + E+ L  +   +   G+ VD        + ++ +  
Sbjct: 439 -----LIDLNSCKFLY------ENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIESKIL 487

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQA 273
           KL+ ++  +      +    ++L   LF +  L +   T+   +T   VL          
Sbjct: 488 KLETQIYQIAG-EWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIV 546

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             + + RM  ++        L++A+N       T      + TGR +      QN+P   
Sbjct: 547 PLILDYRMY-TKILTTYCQGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKY 605

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
              +                          +R   +  EG  L+ AD + IE R+LA ++
Sbjct: 606 DEGK-------------------------LIRKVFVPEEGHVLIDADYSQIELRILAHIS 640

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            ++  + AF+   D++  T A  F V  A VT + R+  K +   +              
Sbjct: 641 EDERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIV------------- 687

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G++                                  A +              + ++
Sbjct: 688 -YGISD------------------------------YGLARDVKISRKEAAEFINKYFER 716

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           + +V E  +   +                              N  ++    R    +D+
Sbjct: 717 YPKVKEYLDNTVKFARD--------------------------NGFVLTLFNRKRYVKDI 750

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627
            +             R            +Q  + DI+   M+   +          I+L 
Sbjct: 751 KSTN---RNLRGYAERIAMNSP------IQGSAADIMKLAMIKVYQKLKENNLKSKIILQ 801

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE++ E P  ++     +    M +    A  +PL  E  E   +
Sbjct: 802 VHDELLIEAPYEEKDIVKRIVKREMENAV--ALKVPLVVEVKEGLNW 846


>gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334]
          Length = 881

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 93/669 (13%), Positives = 194/669 (28%), Gaps = 158/669 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACF 84
             F                +    +K  LE+         +  + TV             
Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            + +P       L+ +           +G+       +  +  +L               
Sbjct: 390 GVKLPDIA-FDVLLASYLINPDENSNDLGKI-----AEDHDYHDLPRDEDIYGKGA---K 440

Query: 145 RNKPNHREAWRLFGEYCKGDV------TVT--REIFKRLEPLSSKEQELWYLDQTINDRG 196
           R  P   + +  F    K D        +T   E  ++ +  +  E  L  +   +  +G
Sbjct: 441 RQVPEDDKLFGQFAR--KSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQG 498

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             ++      +          L++++ +       +    ++L   LF +  L +   T+
Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTK 557

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL+  K  +P    + + R   ++     +  L++A   D ++         
Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYR-GWAKLNSTYVVGLLKAQLPDHKIHTRYLQ-TL 615

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   + S E
Sbjct: 616 TQTGRLSSVDPNMQNIPARDE--------------------------GKIIRKAFVPSHE 649

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
           G ++  +D + IE RVL+ ++G++   +AF+ G D++  T  + F ++ P QVT D R  
Sbjct: 650 GWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQ 709

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K                      G++    +  +                         
Sbjct: 710 AKATNF--------------GIVYGISDYGLSQNI------------------------- 730

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     +  ++ +V +         ++  E+G                
Sbjct: 731 -----GISRKQAKAFIDGYFDQYPKVHDYM---DAMVKKAREDGYVETL----------- 771

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                         R      + +         +   R            +Q  + DI+ 
Sbjct: 772 ------------FHRRRYLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIK 810

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
             M+   KA         ++L VHDE++ E P+ +    S L   +M S       +PLK
Sbjct: 811 VAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLK 868

Query: 665 AEGYESKRY 673
            E +    +
Sbjct: 869 VESHYGPTW 877


>gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
 gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075]
          Length = 887

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 100/676 (14%), Positives = 208/676 (30%), Gaps = 140/676 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73
           L   G   +  D   + F+   +D          D  + +   +K  LE+  +     N 
Sbjct: 330 LEMLGANYHLADF--VGFSLKINDK----IYVSRDVDLLEEDNIKHILEDEKIKK---NV 380

Query: 74  YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            F+     V      +      +   L+ +      +    +GE   L        K  +
Sbjct: 381 -FDLKRSMVGAHRLGIHTHGLDY-DMLLASYLVNNENNSNDLGEIAHL--YGDYSVKTDL 436

Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
             + KG++     D ++  +  A +    E  K  +    +  ++     + E     + 
Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLKDHEQDALFDTIEIPTARVL 496

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V+ +    L     V+  KL+ ++         +    ++L   LF + GL
Sbjct: 497 ARMEMNGMKVETSTLIQLQNEFAVKLKKLEDKIYGQAG-EKFNLNSPKQLGHILFEKLGL 555

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL   K  +P   ++ + R   ++     +  L++ +  DGR+  
Sbjct: 556 PVIKKTKTGYSTSVEVLDQLKTQSPIVSKILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 614

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P  +   +                          +R 
Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             +       +   D + +E RVLA ++G+Q   +AF+TG D++  T  + F++  P +V
Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEV 708

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R   K +                    G++    +                     
Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++ ++ +  N   +A ++  + G A       
Sbjct: 735 ----------NLGISRKRAQEFIDNYFEQYPQIKDYMN---KAVQEARDKGYAETIMH-- 779

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R     D+   +    T      R            +Q 
Sbjct: 780 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 809

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M S    
Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868

Query: 658 AKGLPLKAEGYESKRY 673
              +PL A+      +
Sbjct: 869 -LDVPLIADSGWGHNW 883


>gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 881

 Score =  309 bits (792), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 93/669 (13%), Positives = 194/669 (28%), Gaps = 158/669 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACF 84
             F                +    +K  LE+         +  + TV             
Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            + +P       L+ +           +G+       +  +  +L               
Sbjct: 390 GVKLPDIA-FDVLLASYLINPDENSNDLGKI-----AEDHDYHDLPRDEDIYGKGA---K 440

Query: 145 RNKPNHREAWRLFGEYCKGDV------TVT--REIFKRLEPLSSKEQELWYLDQTINDRG 196
           R  P   + +  F    K D        +T   E  ++ +  +  E  L  +   +  +G
Sbjct: 441 RQVPEDDKLFGQFAR--KSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQG 498

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             ++      +          L++++ +       +    ++L   LF +  L +   T+
Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTK 557

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL+  K  +P    + + R   ++     +  L++A   D ++         
Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYR-GWAKLNSTYVVGLLKAQLPDHKIHTRYLQ-TL 615

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   + S E
Sbjct: 616 TQTGRLSSVDPNMQNIPARDE--------------------------GKIIRKAFVPSHE 649

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
           G ++  +D + IE RVL+ ++G++   +AF+ G D++  T  + F ++ P QVT D R  
Sbjct: 650 GWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQ 709

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K                      G++    +  +                         
Sbjct: 710 AKATNF--------------GIVYGISDYGLSQNI------------------------- 730

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     +  ++ +V +         ++  E+G                
Sbjct: 731 -----GISRKQAKAFIDGYFDQYPKVHDYM---DAMVKKAREDGYVETL----------- 771

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                         R      + +         +   R            +Q  + DI+ 
Sbjct: 772 ------------FHRRRYLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIK 810

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
             M+   KA         ++L VHDE++ E P+ +    S L   +M S       +PLK
Sbjct: 811 VAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLK 868

Query: 665 AEGYESKRY 673
            E +    +
Sbjct: 869 VESHYGPTW 877


>gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
 gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus casei str. Zhang]
          Length = 881

 Score =  309 bits (792), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 92/669 (13%), Positives = 195/669 (29%), Gaps = 158/669 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACF 84
             F                +    +K  LE+         +  + TV             
Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            + +P       L+ +           +G+       +  +  +L               
Sbjct: 390 GVKLPDIA-FDVLLASYLINPDENSNDLGKI-----AEDHDYHDLPRDEDIYGKGA---K 440

Query: 145 RNKPNHREAWRLFGEYCKGDV------TVTREIFKRLEPLSSKEQELWY--LDQTINDRG 196
           R  P   + +  F    K D        +T ++ K+ +     + E+    +   +  +G
Sbjct: 441 RQVPEDDKLFGQFAR--KSDALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQG 498

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             ++      +          L++++ +       +    ++L   LF +  L +   T+
Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTK 557

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL+  K  +P    + + R   ++     +  L++A   D ++         
Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYR-GWAKLNSTYVVGLLKAQLPDHKIHTRYLQ-TL 615

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   + S E
Sbjct: 616 TQTGRLSSVDPNMQNIPARDE--------------------------GKIIRKAFVPSHE 649

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
           G ++  +D + IE RVL+ ++G++   +AF+ G D++  T  + F ++ P QVT D R  
Sbjct: 650 GWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQ 709

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K                      G++    +  +                         
Sbjct: 710 AKATNF--------------GIVYGISDYGLSQNI------------------------- 730

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     +  ++ +V +         ++  E+G                
Sbjct: 731 -----GISRKQAKAFIDGYFDQYPKVHDYM---DAMVKKAREDGYVETL----------- 771

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                         R      + +         +   R            +Q  + DI+ 
Sbjct: 772 ------------FHRRRYLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIK 810

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
             M+   KA         ++L VHDE++ E P+ +    S L   +M S       +PLK
Sbjct: 811 VAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIVQLSELVPKVMDSAVH--LDVPLK 868

Query: 665 AEGYESKRY 673
            E +    +
Sbjct: 869 VESHYGPTW 877


>gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I
 gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax]
          Length = 877

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 86/668 (12%), Positives = 181/668 (27%), Gaps = 142/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 328 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 381

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 382 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 433

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 434 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 492

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   ++
Sbjct: 493 VKVDTKRLEQMGEELAEQLRTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKSK 551

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            +  +  +  +     +  L++ +  D +   T+     
Sbjct: 552 TGYSTSADVLEKLAPYHEIVENILQHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 611

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 612 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 646

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 647 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 706

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 707 KAVNF--------------GIVYGISDYGLAQ---------------------------- 724

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 725 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 769

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 770 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 807

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 808 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 865

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 866 DYHYGSTW 873


>gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
 gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952]
          Length = 881

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 90/661 (13%), Positives = 199/661 (30%), Gaps = 134/661 (20%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++ FA+  + + + + D +    + +   L++ L +   T    ++      L      
Sbjct: 335 EIVGFAWS-NGNRIYVTDNLS---LLEDNALQDWLFDAKRTKSVFDAKRTTVALHRYVGS 390

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
             P      +L+         +   +          + E +   A + KG     L + N
Sbjct: 391 --PNGIQFDSLLACYLLDTNDSSNDLALVAH--RYGLTEIETDEAVYGKGAKK-GLPEDN 445

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALA 204
           +  +    R      K D  ++ E+ ++ +       E  L ++   +   G  VD    
Sbjct: 446 ERFYSHLARKVATMQKLDTKLSDELVEKGQWTLYKEMELPLSFILAEMEITGIHVDAQRL 505

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             +      +   +++++ +       +    ++L   LF + GL +   T+   +T   
Sbjct: 506 IAMKSEFATKLHDIEEKIYAQ-ANERFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVD 564

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL   K   P    +   R   ++     +  L+  + SDG++         ++TGR S 
Sbjct: 565 VLEQLKVQAPIVEDILTYRQ-IAKIQSTYVEGLLRMIQSDGKVHTRYVQ-TLTQTGRLSS 622

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380
                QN+P       +                         +R   +   +   +  +D
Sbjct: 623 VDPNLQNIPIRLEEGRK-------------------------IRQAFVPRNKNWVIYSSD 657

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELAL 439
            + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R   K +    
Sbjct: 658 YSQIELRVLAHISKDEHLQAAFIEGQDIHTSTAMRVFGLESAEDVTPNMRRQAKAVNF-- 715

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++    +                                    
Sbjct: 716 ------------GIVYGISDYGLSQ------------------------------NLGIT 733

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               ++    + +++  V      + +  ++                          +  
Sbjct: 734 RKQAQQYIDTYFERYPGVKAYMENVVEQAKK--------------------------DGY 767

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +     R     D+               R            +Q  + DIL   M+   K
Sbjct: 768 VETLYHRRRYLPDLYAKN---YNIRSFAERTAINSP------IQGSAADILKIAMIEMNK 818

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
                     ++L VHDE+V E P+ +  +   L   +M    + A  +PL  +    + 
Sbjct: 819 RLKEEKLAATMLLQVHDELVFEVPEEELAHVDQLVKEVMEHAVTLA--IPLVTDSNWGET 876

Query: 673 Y 673
           +
Sbjct: 877 W 877


>gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583]
 gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583]
          Length = 880

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 86/679 (12%), Positives = 187/679 (27%), Gaps = 148/679 (21%)

Query: 19  CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH------- 71
            GI    E   ++     + +   E++  +    + +   + L                 
Sbjct: 322 VGIELLEEKGQILGLGLAWGEEETEVYSILPQGFVTE---DYLIEKTQEFCQQGKLIASL 378

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALK---LSSQKMEE 125
           N       +    +L    +      + A              + +        +++   
Sbjct: 379 NIK----AMLRYMDLK-SHNDMFDAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLL 433

Query: 126 GK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           GK   I    + E                 R             +E++         E  
Sbjct: 434 GKLSYIKAANEKEEELAKSVCYMAYTALKSRTSLLEALE-KENMKELYT------DMEMP 486

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L +    +   G  V+        + + V    L++E+         +    ++L   LF
Sbjct: 487 LLFTLADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQAG-EEFNINSPKQLGVILF 545

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +  L     T+   +T   VL            +   R   ++      + L   +  D
Sbjct: 546 EKLELPGGKKTKTGYSTAADVLEKLAPEHKLVADILEYRQ-LTKLKSTYADGLANYIAED 604

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  T      + TGR S      QN+P  +                            
Sbjct: 605 GRIHSTFNQ-TITATGRISSTEPNLQNIPVRTELGR------------------------ 639

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   I  +G   + AD + IE RVLA M+G++  ++A++  +D++  T ++ F++  
Sbjct: 640 -LLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPF 698

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            +VT  QR   K +   + Y            +  L+                       
Sbjct: 699 DEVTPLQRRNAKAVNFGIVYG-----ISSFGLSQDLS----------------------- 730

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                  +  +++ Q + ++    + L +  ++           
Sbjct: 731 ----------------ISRKEAAQYIESYFQTYPKIKGFLDGLVEEAKE----------- 763

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             +     R     ++ ++     +      R            
Sbjct: 764 ---------------KGYVSTLFHRRRPVPELKSSNFMQRS---FGERVAMNSP------ 799

Query: 602 VQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+   K          +VL VHDE++ ET   +    S +    M   
Sbjct: 800 IQGTAADIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEA 859

Query: 655 PSWAKGLPLKAEGYESKRY 673
                 + L+ + +  + +
Sbjct: 860 AH--LSVALEIDMHTGENW 876


>gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 887

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 100/676 (14%), Positives = 209/676 (30%), Gaps = 140/676 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73
           L   G   +  D   + F+   +D          D  + +   +K  LE+  +     N 
Sbjct: 330 LEMLGANYHLADF--VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 380

Query: 74  YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            F+     V      +      +   L+ +      +    +GE   L        K  +
Sbjct: 381 -FDLKRTMVAAHRLGIHTQGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 436

Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
             + KG++     D ++  +  A +    E  K ++    +  ++     + E     + 
Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKVNAIEKLKPELLKKLKEHEQDALFDTIEIPTARVL 496

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V+ +    L     V+  +L+ ++ S       +    ++L   LF + GL
Sbjct: 497 ARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAG-EKFNLNSPKQLGHILFEKLGL 555

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL   K  +P   ++ + R   ++     +  L++ +  DGR+  
Sbjct: 556 PVIKKTKTGYSTSVEVLDQLKMQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 614

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P  +   +                          +R 
Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             +       +   D + +E RVLA ++G+Q   +AF+TG D++  T  + F++  P QV
Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQV 708

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R   K +                    G++    +                     
Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++ ++ +      +A ++  + G A       
Sbjct: 735 ----------NLGISRKRAQEFIDNYFEQYPQIKDYM---DKAVQEARDKGYAETIMH-- 779

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R     D+   +    T      R            +Q 
Sbjct: 780 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 809

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M S    
Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868

Query: 658 AKGLPLKAEGYESKRY 673
              +PL A+      +
Sbjct: 869 -LDVPLIADSGWGHNW 883


>gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
 gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528]
          Length = 876

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 97/684 (14%), Positives = 201/684 (29%), Gaps = 163/684 (23%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66
           D E+ S   + K  I    ++  +           +            ++ K   EN  +
Sbjct: 335 DEESYSRNYIDKVFISLNEKNFQI----------HINEIYNEDKNKAVELFKLLFENEGI 384

Query: 67  TIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           + V     ++  V    L       + +       + A       +              
Sbjct: 385 SKVG----YDVKVPCSILYKMGIRFLKLE--FDIKIAAYLIDSSRS-------------- 424

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--S 180
             E K++I    +    E   D  K   +E       Y      +T++I +         
Sbjct: 425 DYELKDIIR---QYTGVEISEDDEKFFSKETVLFSKVYS----ELTKKIEEAHMEELLYK 477

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            EQ L Y+  ++   G+ VD            +E  K+ +E+ SL+     +    ++L 
Sbjct: 478 VEQPLIYVLASMECEGFKVDKDKLVEQEGKFKIEIDKVQKEIYSLSE-EEFNINSPKQLG 536

Query: 241 TWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF +  L +   T+   +T   VL   K   P   ++   R   ++     +  L   
Sbjct: 537 KILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIVEKIIYYRQ-LTKLYSTYIEGLKAV 595

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +  D ++  +      + TGR S      QN+P      +E                   
Sbjct: 596 IQEDDKIHSSFNQTVTT-TGRLSSTEPNLQNIPIKYEMGKE------------------- 635

Query: 358 QIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R   +   E   ++ AD + IE RVLA +A ++  + AF    D++  T +  
Sbjct: 636 ------IRKIFVPENEDCVILSADYSQIELRVLAHIADDENLISAFINHSDIHTKTASEV 689

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V   +VT  QR+  K +   +                G+   +               
Sbjct: 690 FKVPIDEVTSAQRSNAKAVNFGIV--------------YGIGDFSL-------------- 721

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                           A          +     + +++ +V    +++ +  +       
Sbjct: 722 ----------------AKNLKISRKEAKLYIDTYFERYPKVKLYMDDIVKEAK------- 758

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                               N  +     R     ++ ++   + +      R       
Sbjct: 759 -------------------VNSYVTTLMNRRRFIPEIKSSNKIVRSF---GERLAMNTP- 795

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYH 649
                +Q  + DI+   M+N  +          ++L VHDE++      +  N   ++  
Sbjct: 796 -----IQGSAADIIKIAMVNVYRRLEENKLKSKLILQVHDELILNVYKEEIDNVKSVVKE 850

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
            M         +PL+ +      +
Sbjct: 851 EMEKVLQ--LKVPLEVDISVGSNW 872


>gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 886

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 100/665 (15%), Positives = 207/665 (31%), Gaps = 145/665 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL- 86
           +  F+    +          DPV+ Q   L++ LE+  +     N  F+    +    L 
Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENLLRKMLEDKTIKK---NV-FDIK--RTYVGLH 391

Query: 87  --DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             ++         L+ +      +    +GE   L        K  +  + KG+      
Sbjct: 392 RLNLKAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDD--YSVKTDLEVYGKGKKQAVPD 449

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW--YLDQTINDRGYCVDV 201
           D     H  A     E  K    +  ++    +    +  E+   ++   +   G  V+ 
Sbjct: 450 DNEFFEHLAAKVAVIE--KLKTPLLEKLKDHEQDDLYETIEIPAAFVLAKMEITGIKVEA 507

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
           ++ + L     V+  +L+ ++         +    ++L   LF + GL     T+   +T
Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLGLPPIKKTKTGYST 566

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   K  +P   ++ + R   ++     +  L+E +  DGR+         + TGR
Sbjct: 567 SVEVLEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLECIQPDGRIHTRYLQ-TLTATGR 624

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKL 376
            S      QN+P  +   +                          +R   +    +G   
Sbjct: 625 LSSVDPNLQNIPTRTNEGK-------------------------QIRKAFVPSTKDGYIF 659

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435
              D + +E RVLA ++G++   +AF++G D++  T  + F++  P +VT   R   K +
Sbjct: 660 -SCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 719 NF--------------GIVYGISDYGLSK------------------------------N 734

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                   +   + + +++ ++    ++   A ++  ENG A                  
Sbjct: 735 LGISRKQAKTFIENYFEQYPQIKNYMDD---AIKKARENGYAETIMH------------- 778

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                     R     D+ +             R            +Q  + DI+   M+
Sbjct: 779 ----------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMI 819

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
           N  K          +VL VHDE++ + P  +      +   +M S       +PL A+  
Sbjct: 820 NMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSN 877

Query: 669 ESKRY 673
               +
Sbjct: 878 WGHNW 882


>gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries]
 gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries]
          Length = 864

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 90/663 (13%), Positives = 185/663 (27%), Gaps = 154/663 (23%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
                D  +   +  +D                   ++ L +  V  + H    +  ++ 
Sbjct: 338 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 393

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIARFCKGETHE 140
             F     +  +   ++++ S    S   ++   A +   QK           C      
Sbjct: 394 RHF---PDLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQKFPA-----RMACTLVQLH 445

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
            +                            +F         E+ L  +   + + G  VD
Sbjct: 446 GVMRNKLLLD-------------------RLFTVYY---QLERPLVRVLYEMQEIGVEVD 483

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLT 255
             +   L+Q        L++E+  L      +     +L   LF   GL      +   +
Sbjct: 484 TEILKQLSQDFHGSIRSLEKEIYDLAGCT-FNVASARQLGKLLFERMGLSSSAKKMPSGS 542

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL+       +           S+     ++ L+  + +  +   T   + ++ 
Sbjct: 543 YSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTA 602

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  S+   E                         +R   +A EG K
Sbjct: 603 TGRISSSNPNLQNIPIRSKEGTE-------------------------IRKAFVAREGHK 637

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           LV AD + +E +++A +AG Q    AF  G+D+++ T  + F         + R   K +
Sbjct: 638 LVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD--PELRRRAKSI 695

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    A  V                             
Sbjct: 696 NFG--------------IIYGMSPFGLAKNV----------------------------- 712

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                    +    + + +  +      +     +                         
Sbjct: 713 -GITRQEASQYVAQYFRSYPEIKNYMEAIKAYARK------------------------- 746

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                    GR      + + +   +T      R            +Q  + D++ + M+
Sbjct: 747 -YGYTRTAFGRKCYISGINSEQ---HTVRGFAERAAINAP------IQGTAADVVKKAMI 796

Query: 616 NATKA---GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESK 671
           N       G  I+L VHDE++ E P++     + L   +M    ++   +PLK +     
Sbjct: 797 NLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIGVGS 853

Query: 672 RYR 674
            + 
Sbjct: 854 SWG 856


>gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
 gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23]
          Length = 881

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 90/667 (13%), Positives = 193/667 (28%), Gaps = 154/667 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACF 84
             F                +    +K  LE+         +  + TV             
Sbjct: 339 IGFFIGTKEETYVSTDITLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            + +P       L+ +           +G+       +  +  +L               
Sbjct: 390 GVKLPDIA-FDVLLASYLINPDENSNDLGKI-----AEDHDYHDLPRDEDIYGKGA---K 440

Query: 145 RNKPNHREAWRLFGEYC----KGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYC 198
           R  P   + +  F             +T ++ K+ +     + E+    +   +  +G  
Sbjct: 441 RQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGIT 500

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           ++      +          L++++ +       +    ++L   LF +  L +   T+  
Sbjct: 501 LNAKTLKAMGTEFSQSIKILEEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTG 559

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL+  K  +P    + + R   ++     +  L++A   D ++         ++
Sbjct: 560 YSTSVDVLNELKSASPIVQDILDYR-GWAKLNSTYVVGLLKAQLPDHKIHTRYLQ-TLTQ 617

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   + S EG 
Sbjct: 618 TGRLSSVDPNMQNIPARDE--------------------------GKIIRKAFVPSHEGW 651

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433
           ++  +D + IE RVL+ ++G++   +AF+ G D++  T  + F ++ P QVT D R   K
Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
                                 G++    +  +                           
Sbjct: 712 ATNF--------------GIVYGISDYGLSQNI--------------------------- 730

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                     +     +  ++ +V +         ++  E+G                  
Sbjct: 731 ---GISRKQAKAFIDGYFDQYPKVHDYM---DAMVKKAREDGYVETL------------- 771

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                       R      + +         +   R            +Q  + DI+   
Sbjct: 772 ----------FHRRRYLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIKVA 812

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+   KA         ++L VHDE++ E P+ +    S L   +M S       +PLK E
Sbjct: 813 MIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870

Query: 667 GYESKRY 673
            +    +
Sbjct: 871 SHYGPTW 877


>gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W]
 gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II]
          Length = 881

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 90/667 (13%), Positives = 193/667 (28%), Gaps = 154/667 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACF 84
             F                +    +K  LE+         +  + TV             
Sbjct: 339 IGFFIGTKEETYVSTDITLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            + +P       L+ +           +G+       +  +  +L               
Sbjct: 390 GVKLPDIA-FDVLLASYLINPDENSNDLGKI-----AEDHDYHDLPRDEDIYGKGA---K 440

Query: 145 RNKPNHREAWRLFGEYC----KGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYC 198
           R  P   + +  F             +T ++ K+ +     + E+    +   +  +G  
Sbjct: 441 RQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGIT 500

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           ++      +          L++++ +       +    ++L   LF +  L +   T+  
Sbjct: 501 LNAKTLKAMGTEFSQSIKILEEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTG 559

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL+  K  +P    + + R   ++     +  L++A   D ++         ++
Sbjct: 560 YSTSVDVLNELKSASPIVQDILDYR-GWAKLNSTYVVGLLKAQLPDHKIHTRYLQ-TLTQ 617

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   + S EG 
Sbjct: 618 TGRLSSVDPNMQNIPARDE--------------------------GKIIRKAFVPSHEGW 651

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433
           ++  +D + IE RVL+ ++G++   +AF+ G D++  T  + F ++ P QVT D R   K
Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
                                 G++    +  +                           
Sbjct: 712 ATNF--------------GIVYGISDYGLSQNI--------------------------- 730

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                     +     +  ++ +V +         ++  E+G                  
Sbjct: 731 ---GISRKQAKAFIDGYFDQYPKVHDYM---DAMVKKAREDGYVETL------------- 771

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                       R      + +         +   R            +Q  + DI+   
Sbjct: 772 ----------FHRRRYLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIKVA 812

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+   KA         ++L VHDE++ E P+ +    S L   +M S       +PLK E
Sbjct: 813 MIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870

Query: 667 GYESKRY 673
            +    +
Sbjct: 871 SHYGPTW 877


>gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
 gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC
           12755]
          Length = 881

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 86/658 (13%), Positives = 186/658 (28%), Gaps = 134/658 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
               + +          +        + L++       +++      L        P   
Sbjct: 337 VGVAWGNQEKIYVSNREELFESPAFTDWLKDEKRKKFVYDAKRTYVALNRYT--TAPKGI 394

Query: 93  WICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
               L+ A              V       + + +E              + L    +  
Sbjct: 395 AFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDE------AIYGKGAKKGLPADEEDF 448

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTL 207
                R           +T E+  + +       E  L  +   +   G  VD +  H +
Sbjct: 449 FAHLARKVAAITNLTPKLTEELAAKNQTALFEEMELPLSMILAEMEITGIKVDASRLHQM 508

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
                    ++++++ +       +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 509 KGEFAQRLHEIEEKIYAEAG-ETFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 567

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K+  P    +   R   ++     +  L++ +  DG++         ++TGR S    
Sbjct: 568 QLKEQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQGDGKVHTRYVQ-TLTQTGRLSSVDP 625

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAG 383
             QN+P       +                         +R   +  E    +  +D + 
Sbjct: 626 NLQNIPIRLEEGRK-------------------------IREAFVPRETDWVIYSSDYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442
           IE RVLA ++ +    +AF  G+D++ +T  R F +     VT + R   K +       
Sbjct: 661 IELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNF----- 715

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G++    +                                      A
Sbjct: 716 ---------GIVYGISDYGLSQ------------------------------NLGITRKA 736

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            ++    + +K+  V     ++ +  +                              +  
Sbjct: 737 AQQYIDTYFEKYPGVKTYMEDVVREAKD--------------------------KGYVET 770

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617
              R     D+ +    + T      R            +Q  + DIL   M++      
Sbjct: 771 LYHRRRYLPDINSRNFNIRTF---AERTAINTP------IQGSAADILKIAMIDLAKRLK 821

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             K    ++L VHDE+V E P+++     +++  +M      A  +PL  +    K +
Sbjct: 822 EEKLAATMLLQVHDELVFEVPESELPRLDALVKEVMEQAV--ALHVPLLTDSNWGKTW 877


>gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426]
 gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426]
          Length = 878

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 330 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 383

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 384 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 435

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 436 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 494

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 495 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 553

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +  D +   T+     
Sbjct: 554 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 612

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 613 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 647

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 648 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 707

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 708 KAVNF--------------GIVYGISDYGLAQ---------------------------- 725

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 726 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 770

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 771 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 808

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 809 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 866

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 867 DYHYGSTW 874


>gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
 gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC]
          Length = 887

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 99/676 (14%), Positives = 208/676 (30%), Gaps = 140/676 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73
           L   G   +  D   + F+   +D          D  + +   +K  LE+  +     N 
Sbjct: 330 LEMLGANYHLADF--VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 380

Query: 74  YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            F+     V      +      +   L+ +      +    +GE   L        K  +
Sbjct: 381 -FDLKRTMVAAHRLGIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 436

Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
             + KG++     D ++  +  A +    E  K ++    +  ++     + E     + 
Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKVNAIEKLKPELLKKLKEHEQDALFDTIEIPTARVL 496

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V+ +    L     V+  +L+ ++         +    ++L   LF + GL
Sbjct: 497 ARMEMNGMKVEASTLIQLQNEFTVKLKELEDKIYGQAG-EKFNLNSPKQLGHILFEKLGL 555

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL   K  +P   ++ + R   ++     +  L++ +  DGR+  
Sbjct: 556 PVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 614

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P  +   +                          +R 
Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             +       +   D + +E RVLA ++G+Q   +AF+TG D++  T  + F++  P QV
Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQV 708

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R   K +                    G++    +                     
Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++ ++ +      +A ++  + G A       
Sbjct: 735 ----------NLGISRKRAQEFIDNYFEQYPQIKDYM---DKAVQEARDKGYAETIMH-- 779

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R     D+   +    T      R            +Q 
Sbjct: 780 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 809

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M S    
Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868

Query: 658 AKGLPLKAEGYESKRY 673
              +PL A+      +
Sbjct: 869 -LDVPLIADSGWGHNW 883


>gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
 gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733]
 gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12]
 gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1]
          Length = 881

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 85/665 (12%), Positives = 185/665 (27%), Gaps = 142/665 (21%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++     +          D        Q     + + +     +++      L      
Sbjct: 335 EIVGV--AWGTEKKIYVTNDLSVFEN--QAFHSWITDPNRLKKVYDAKRTYVALNRYTG- 389

Query: 87  DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                      L+ A           ++ +      +  + +E              + L
Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------TVYGKGAKKGL 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +  +       R           +++E+  + +    ++ EL    +   +   G  VD
Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +         +++Q++         +    ++L   LF + GL +   T+   +
Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   ++  P    +   R   ++     +  L++ + SDG++         ++TG
Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   +  E    +
Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435
             +D + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R   K +
Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 A ++    + +K+  V E    + +  +                          
Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +     R     D+ +             R            +Q  + DIL   M+
Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              K          ++L VHDE+V E P+ +  +   L   +M    S    +PL  +  
Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872

Query: 669 ESKRY 673
             K +
Sbjct: 873 WGKTW 877


>gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27]
 gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27]
          Length = 834

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 96/610 (15%), Positives = 182/610 (29%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL     LD+        ++LA      +   + V         +    + L++   
Sbjct: 357 DLAVLALREGLDLAPG--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAHRALLSERL 414

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                     RN     E                  ++  +E   S       +   +  
Sbjct: 415 H---------RNLLKRLEGEEKL-----------LWLYHEVEKPLS------RVLAHMEA 448

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253
            G  +DVA    L+  +  E  +L++E+  L      +    ++L+  LF E  L  L  
Sbjct: 449 TGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHP-FNLNSRDQLERVLFDELRLPALGK 507

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
             +    +T   VL + ++  P   ++  +R   ++     ++ L   ++   GRL    
Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELTKLKNTYVDPLPSLVHPRTGRLHTRF 566

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 567 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 600

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A  G  LV  D + IE RVLA ++G++  ++ F+ G+D++  T +  F V P  V    
Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 661 RRAAKTVNF--------------GVLYGMS------------------------------ 676

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E            + + Q   +V      + +  E+  + G             
Sbjct: 677 AHRLSQELAIPYEEAVAFIERYFQSFPKVRAW---IEKTLEEGRKRGYVETL-------- 725

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 726 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 761

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE++ E P       + L    M      A  +PL
Sbjct: 762 LMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPL 819

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 820 EVEVGIGEDW 829


>gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
 gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771]
          Length = 888

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 80/660 (12%), Positives = 179/660 (27%), Gaps = 146/660 (22%)

Query: 30  VILFAFGFDDHPVELWDC----VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
           +I  A    +    L              ++L+    ++ +    +++  +   L   + 
Sbjct: 353 LISVALCLSEGQNYLLPLNSSTETTSFALKLLQNICVDSKIKKCCYDTKADL-WLLHYYG 411

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYD 144
           ++I        ++         + +++ E AL      ++EG E                
Sbjct: 412 IEINQPG-FDVMLADYLLNPGKSARSLPETALSHLDIVLQEGSET--YLPASAEVISRLV 468

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               +          Y      +   +                +  ++   G  VD    
Sbjct: 469 DILQSKLLLQEQENLY----YDIELPL--------------LKVLASMERTGVSVDKEQL 510

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             +++ ++ +   L  ++       + +    ++L + LF +  L     T+   +T   
Sbjct: 511 QLMSEELNKKLQVLTTDIYEHAG-EIFNINSTKQLGSILFEKLKLKAGKKTKTGYSTDVT 569

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL       P    +   R   ++     ++ L   +N       T      + TGR S 
Sbjct: 570 VLEELAGDHPVVSLLLEYRQ-LAKLKSTYVDGLTGLINPQTGKLHTTFHQAVTATGRLSS 628

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P    +  +                         +R   +       +  AD
Sbjct: 629 SEPNLQNVPIRLDAGRK-------------------------IRKFFVPCKPDNFIFSAD 663

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +A +   + AF   +D++  T +  F VA  +VT + R   K +   + 
Sbjct: 664 YSQIELRILAHIAQDNNLMDAFAKKQDIHTRTASEVFGVAMDEVTPEMRGRAKAVNFGIV 723

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y               + +         N+    +   + +   +     E         
Sbjct: 724 YGIS-----DFGLAKDIKVTRKEAGRYINNYFNRYSGVKAYIDRVIREAREKGYVTTI-- 776

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P ++          
Sbjct: 777 ---------------------------------------LNRRRYLPDLFSSNRVVRSF- 796

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618
                           R+ +NT                   +Q  + DI+   M+     
Sbjct: 797 --------------GERTAMNTP------------------IQGSASDIIKLAMVLIYRE 824

Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
               K    ++L VHDE++ +   ++      L    M +       +PL  +      +
Sbjct: 825 MRKRKLSSTMILQVHDELIFDVVASEVEEMQNLVKYYMENAVE--LSVPLVVDMKIGPNW 882


>gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 886

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 93/658 (14%), Positives = 196/658 (29%), Gaps = 135/658 (20%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            F   +    L     DP + +   ++  L N+ +     N+  +   L     + +   
Sbjct: 341 GFALGNDEQWLV--SRDPELLKAPEVQNWLTNSKIKKDVFNAKAQIVGLNR-LGISLDGI 397

Query: 92  RWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                L+ +           L  +         + +E       + KG       D    
Sbjct: 398 D-FDLLLASYLLNTNDNSNDLGKLAHEHGYDDVQTDE-----EVYGKGAKRTIPDDDQLF 451

Query: 149 N-HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
             H        E  +  +    E  ++L   +  E  L ++   +   G  VD      +
Sbjct: 452 FQHLANKARAIEQLRPQLFEQLEKNEQLPLYTDIELPLTHVLAKMEITGVHVDAQTLKNM 511

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
              +    T++++++         +    ++L   LF +  L +   T+   +T   VL 
Sbjct: 512 GSKLTERLTEIEEQIYQEAG-EEFNINSTKQLGKILFEKLKLPVIKKTKTGYSTAVDVLE 570

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                 P    +   R   S+     +  L++ ++S  +   T      ++TGR S    
Sbjct: 571 KLAPQAPIVENILQYRQ-ISKLQSTYIKGLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDP 629

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383
             QN+P                                 +R   + S EG ++  +D + 
Sbjct: 630 NLQNIPVRLPEGR-------------------------LIRQAFVPSHEGWQIFSSDYSQ 664

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAIGKVMELALGYQ 442
           +E RVLA + G+    + F+ GED++ +T  R F+     ++ ++ R   K +   + Y 
Sbjct: 665 VELRVLAHITGDHNLQEDFKNGEDIHASTARRIFHLKPDQEIDRNMRRRAKAVNFGIVYG 724

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                         ++++         +  +E+   +++     E   ++   +      
Sbjct: 725 IS-----DYGLAQRIHVSRSQAHEFIQNYFKEFPKVKDYIHDTIEFARQNGYVETIT--- 776

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                                                  +RR +P +  K          
Sbjct: 777 --------------------------------------HRRRYLPDINSKSFSRRSF--- 795

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
                         R+ +NT                   +Q  + DI+   M+       
Sbjct: 796 ------------AERTAMNT------------------PIQGSAADIIKIAMIKMQDELE 825

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L +HDE+V E P  +    S L   +M S       +PLK +      +
Sbjct: 826 KRQLKAKMLLQIHDELVFEAPKEEIPVLSKLVPDVMDSAVK--LSVPLKVDSKYGDTW 881


>gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
 gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590]
          Length = 877

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 93/633 (14%), Positives = 182/633 (28%), Gaps = 132/633 (20%)

Query: 56  VLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            L E LEN     +  ++   +   V      +++        ++ +        ++ V 
Sbjct: 358 ELIEWLENDHNNKIVFDAKKTY---VAAHRLEINLQHID-FDVMLASYIINPSRTIEDVQ 413

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG--DVTVTREI 171
             +   +Q     K  IA + KG+  +   D     H  A      Y        +    
Sbjct: 414 SVVSYYNQ--NFVKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAI-YNCKPLMSDI-LSD 469

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
             +++ L++ E  L  +   + + G   DV     +   +  +   L  E+         
Sbjct: 470 HNQMDLLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAG-ESF 528

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF    L +   T+   +T   VL   +   P    +   R   S+   
Sbjct: 529 NINSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQ-LSKLQS 587

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L + ++ D R+        A +TGR S      QN+P       +          
Sbjct: 588 TYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSIDPNLQNIPIRLEEGRK---------- 636

Query: 349 SITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R      S+   ++ AD + IE RVLA M  ++   +AF  G+D
Sbjct: 637 ---------------IRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGDD 681

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T  + F V   QV    R   K +                    G++    +    
Sbjct: 682 IHAATAMKVFGVEKDQVNDLMRRQAKAVNF--------------GIVYGISDYGLSQ--- 724

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                               +     +      V +   ++   
Sbjct: 725 ---------------------------NLGITRKKAKAFIDDYLASFPGVKQYMTDI--- 754

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            +    NG                              R     D+ +            
Sbjct: 755 VKDAKANGYVETLLH-----------------------RRRYIPDITSRNF---NLRSFA 788

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDE 641
            R            +Q  + DI+   M+   K          ++L VHDE++ E P ++ 
Sbjct: 789 ERTAMNTP------IQGSAADIIKLAMVQFDKNVRETNYHAKLLLQVHDELIFEVPKSEV 842

Query: 642 FNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            + S  +  +M +  + A  +PL  +      +
Sbjct: 843 QDFSEFVEEIMDNALTLA--VPLLVDSSYGATW 873


>gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
 gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533]
          Length = 886

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 101/665 (15%), Positives = 206/665 (30%), Gaps = 145/665 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL- 86
           +  F+    +          DPV+ Q   L++ LE+  +     N  F+    +    L 
Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENSLRQMLEDKTIKK---NV-FDIK--RTYVGLH 391

Query: 87  --DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             DI         L+ +      +    +GE   L        K  +  + KG+      
Sbjct: 392 RLDIKAEGLDYDMLLASYLVNNENNSNDLGEIAHLYDD--YSVKTDLEVYGKGKKQAVPD 449

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDV 201
           D +   H  A     E  K    +  ++    +    +  E+    +   +   G  V+ 
Sbjct: 450 DNDFFEHLAAKVAVIE--KLKTPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
           ++ + L     V+  +L+ ++         +    ++L   LF + GL     T+   +T
Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLGLPPIKKTKTGYST 566

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   K  +P   ++ + R   ++     +  L++ +  DGR+         + TGR
Sbjct: 567 SVEVLEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLDCIQPDGRIHTRYLQ-TLTTTGR 624

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKL 376
            S      QN+P  +   +                          +R   +    +G   
Sbjct: 625 LSSVDPNLQNIPTKTEEGK-------------------------QIRKAFVPSTKDGYIF 659

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435
              D + +E RVLA ++G++   +AF++G D++  T  + F++  P +VT   R   K +
Sbjct: 660 -SCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 719 NF--------------GIVYGISDYGLSK------------------------------N 734

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                   +   + + +++ ++        +A ++  ENG A                  
Sbjct: 735 LGISRKQAKTFIENYFEQYPQIKNYM---DEAIKKARENGYAETIMH------------- 778

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                     R     D+ +             R            +Q  + DI+   M+
Sbjct: 779 ----------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMI 819

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
           N  K          +VL VHDE++ + P  +      +   +M S       +PL A+  
Sbjct: 820 NMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSN 877

Query: 669 ESKRY 673
               +
Sbjct: 878 WGHNW 882


>gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 881

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 90/667 (13%), Positives = 193/667 (28%), Gaps = 154/667 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACF 84
             F                +    +K  LE+         +  + TV             
Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            + +P       L+ +           +G+       +  +  +L               
Sbjct: 390 GVKLPDIA-FDVLLASYLINPDENSNDLGKI-----AEDHDYHDLPRDEDIYGKGA---K 440

Query: 145 RNKPNHREAWRLFGEYC----KGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYC 198
           R  P   + +  F             +T ++ K+ +     + E+    +   +  +G  
Sbjct: 441 RQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGIT 500

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           ++      +          L++++ +       +    ++L   LF +  L +   T+  
Sbjct: 501 LNAKTLKAMGTEFSQSIKILEEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTG 559

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL+  K  +P    + + R   ++     +  L++A   D ++         ++
Sbjct: 560 YSTSVDVLNELKSASPIVQDILDYR-GWAKLNSTYVVGLLKAQLPDHKIHTRYLQ-TLTQ 617

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   + S EG 
Sbjct: 618 TGRLSSVDPNMQNIPARDE--------------------------GKIIRKAFVPSHEGW 651

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433
           ++  +D + IE RVL+ ++G++   +AF+ G D++  T  + F ++ P QVT D R   K
Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
                                 G++    +  +                           
Sbjct: 712 ATNF--------------GIVYGISDYGLSQNI--------------------------- 730

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                     +     +  ++ +V +         ++  E+G                  
Sbjct: 731 ---GISRKQAKAFIDGYFDQYPKVHDYM---DAMVKKAREDGYVETL------------- 771

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                       R      + +         +   R            +Q  + DI+   
Sbjct: 772 ----------FHRRRYLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIKVA 812

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+   KA         ++L VHDE++ E P+ +    S L   +M S       +PLK E
Sbjct: 813 MIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVE 870

Query: 667 GYESKRY 673
            +    +
Sbjct: 871 SHYGPTW 877


>gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
 gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2]
          Length = 878

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 86/691 (12%), Positives = 191/691 (27%), Gaps = 151/691 (21%)

Query: 10  TRSPIDLTKCGICKYAE-------DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           T     + K  +  + E          ++  +   +     +          +  +   +
Sbjct: 308 TTLDPSILKDEMAVHLELYDEHYHSCDLLGVSLATE-RDTYVIPMDVVER-SEEFRAWCK 365

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG---EALKLS 119
           ++       +S          F +++        ++ A           +    +    +
Sbjct: 366 DSTKKKFMSDSKAATAAFLR-FGVELRGVD-FDLMLGAYIVNPSLTYTDMASIVQEYGHN 423

Query: 120 SQKMEEG------KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                E       K+ +        H     R     R       E  +       +++ 
Sbjct: 424 DVSTNEQIYGKGAKKKVPEDAILHEHIARKARTIWKVRPLIMAKLEDNEQ-----FDLYD 478

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +LE        L  +   +   G  V+      + + +  +  K++ ++  L      + 
Sbjct: 479 KLE------LPLATVLGQMESLGVMVNRDQLVEMGKELAHKLEKIESDIHGLAGQ-EFNI 531

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF + GL     T+   +T   VL   +        +   R    +     
Sbjct: 532 NSPKQLGVILFEKLGLPALKKTKTGYSTAADVLEKLEGQHEIISHILMYRQ-LGKLLSTY 590

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++ ++ DG++    Q    + TGR S      QN+P       +            
Sbjct: 591 IEGLLKEIHEDGKIHTRFQQALTT-TGRLSSINPNLQNIPVRLEEGRK------------ 637

Query: 351 TSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   +    G  +V AD + IE RVLA M+ ++  ++AF+   D++
Sbjct: 638 -------------IRKAFVPSEPGWVMVAADYSQIELRVLADMSEDERLVQAFKDDRDIH 684

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            TT +  F+V   +VT D R   K +                    G++    +      
Sbjct: 685 TTTASDVFHVTEEEVTSDMRRAAKAVNF--------------GIVYGISDYGLSQ----- 725

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                 + +      V      +    +
Sbjct: 726 -------------------------NLNIPRKEAAAFIERYFASFPGVKSYMTNIVADAK 760

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +                          +  +     R     D+ ++            R
Sbjct: 761 R--------------------------DGFVTTLMNRRRYLPDITSSNF---NLRSFAER 791

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+ + M++   A         ++L VHDE++ E P  +  +
Sbjct: 792 TAMNTP------IQGSAADIIKKAMIDMDAAIEREGLQARMLLQVHDELIFEAPPEELDH 845

Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              L   +M +       +PLK +      +
Sbjct: 846 LMKLVPEVMENAVK--LSVPLKVDIAHGSTW 874


>gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501]
 gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501]
          Length = 881

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 85/665 (12%), Positives = 184/665 (27%), Gaps = 142/665 (21%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++     +          D        Q     + +       +++      L      
Sbjct: 335 EIVGV--AWGTEKKIYVTNDLSVFEN--QAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389

Query: 87  DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                      L+ A           ++ +      +  + +E              + L
Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------TVYGKGAKKGL 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +  +       R           +++E+  + +    ++ EL    +   +   G  VD
Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +         +++Q++         +    ++L   LF + GL +   T+   +
Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   ++  P    +   R   ++     +  L++ + SDG++         ++TG
Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   +  E    +
Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435
             +D + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R   K +
Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 A ++    + +K+  V E    + +  +                          
Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +     R     D+ +             R            +Q  + DIL   M+
Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              K          ++L VHDE+V E P+ +  +   L   +M    S    +PL  +  
Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872

Query: 669 ESKRY 673
             K +
Sbjct: 873 WGKTW 877


>gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7]
 gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7]
          Length = 880

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 98/642 (15%), Positives = 188/642 (29%), Gaps = 145/642 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
               ++    + LK+  EN  +  V+HN     TV K    ++    +   T + A    
Sbjct: 367 IYEENNEDTLKCLKDIFENDKIEKVSHNIKVPYTVFKK-MGINFTSVK-FDTEIAAYLID 424

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                        L+S         I  + K        +     +     +F    K  
Sbjct: 425 SSRG------EYGLNSI--------IQDYLKIMLQGEEDEIRVKENSLLKDVFETLNKQI 470

Query: 165 VTVTRE--IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             +  E  ++         EQ L  +   +   G+ VD      L +   +E  KL +++
Sbjct: 471 KELNMEELLY-------EVEQPLTLVLAAMEYEGFKVDNVKLEELGEKFKIEIDKLKKDI 523

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
             L      +    ++L   LF +  L +   T+   +T   VL       P   ++   
Sbjct: 524 YGL-AEEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEQLLDKHPIIEKITYY 582

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++     +  L   ++ DG++  +      + TGR S      QN+P       E 
Sbjct: 583 RQ-FTKLYSTYIEGLKAVIDKDGKIHSSFNQTVTT-TGRLSSTEPNLQNIPIKYEMGRE- 639

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWK 398
                                   +R   +   E   ++ AD + IE RVLA +A ++  
Sbjct: 640 ------------------------IRKVFVPEDENSIILSADYSQIELRVLAHIADDENL 675

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF    D++  T +  F V   QVTK QR+  K +   +                G+ 
Sbjct: 676 IDAFLNHSDIHTKTASEVFKVPIDQVTKLQRSNAKAVNFGIV--------------YGIG 721

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
             +                               A +        +     + +++  V 
Sbjct: 722 DFSL------------------------------AKDLKISRKEAKNYIDTYFERYPGVK 751

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
              + + +  E                           NL +     R     ++ N++ 
Sbjct: 752 RYMDNVIKQAED--------------------------NLYVTTIMNRRRFIPEIKNSKK 785

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEI 632
            +        R            +Q  + DI+   M+N             ++L VHDE+
Sbjct: 786 MVK---AFGERLAMNTP------IQGSAADIIKMSMVNVYNILKSKNLKSKVILQVHDEL 836

Query: 633 VCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +      +      L    M         +PL+ +      +
Sbjct: 837 ILNVYKDELEEVKELVKNQMEDVMK--LRVPLEVDINLGDNW 876


>gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
 gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A]
 gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135]
          Length = 876

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 97/663 (14%), Positives = 201/663 (30%), Gaps = 131/663 (19%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLK 81
           Y +D  ++ F F  +   V +     D    + L + LE+ + T + +++   +   V  
Sbjct: 328 YLKD-TILKFGFYTNHQHVVI--NAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSA 381

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
               ++I        ++ +       ++  V     +S       K+ I  F KG+ H  
Sbjct: 382 HRLGINIENIE-FDVMLASYIIDPSRSIDDVKSV--VSLYGQNYVKDNITIFGKGKKHHI 438

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
             +     H  +           +    E + ++E L   E  L  +   + + G   D+
Sbjct: 439 PEEPILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDI 498

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                +   +  +   L   +   + G   +    ++L   LF    L +   T+   +T
Sbjct: 499 NDLKEMEFEIQKKLDVLISNIHE-SAGEAFNINSPKQLGVVLFETLQLPVIKKTKTGYST 557

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL   +   P    +   R   ++     +  L + ++ D R+        A +TGR
Sbjct: 558 AVDVLEKLQGEHPIIDDILEYRQ-LAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLV 377
            S      QN+P       +                         +R      S+   ++
Sbjct: 616 LSSIDPNLQNIPIRLEEGRK-------------------------IRKAFKPTSKDSVIL 650

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA +  ++    AF  G D++  T  + FNV   QV    R   K +  
Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y            +  L +         +     +   + +   + ++       + 
Sbjct: 711 GIVYGIS-----DYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVET 765

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                                                       +RR +P +  +     
Sbjct: 766 L-----------------------------------------LHRRRYIPDITSRNVNLR 784

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                              R+ +NT                   +Q  + DI+   M+  
Sbjct: 785 SF---------------AERTAMNT------------------PIQGSAADIIKLAMVKF 811

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670
           ++          ++L VHDE++ E P ++  + S  +  +M         +PLK +    
Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869

Query: 671 KRY 673
             +
Sbjct: 870 ATW 872


>gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
 gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814]
          Length = 871

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 90/670 (13%), Positives = 179/670 (26%), Gaps = 159/670 (23%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVL 80
           +A+   +      F                  + + L +  E  +   + H         
Sbjct: 337 FADQAGLGGIGLCFSKEESYCIKVEKDITGEWLLKKLADVAEKAETYAMFH-LK------ 389

Query: 81  KACFNLDI-PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG 136
           ++   + I          V A            + V               E I +  K 
Sbjct: 390 ESMEQVTIRNQANCFDVSVAAYLLNPLKNNYTWEDVAREHLGLM-----IDEKIDQDMKA 444

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQELWYL--DQTIN 193
                            +  +  Y    V V R+ +         ++ E+  +     + 
Sbjct: 445 C----------------YESYVNYAS--VEVLRQKLRDTKMDTLFRDIEMPLVFTLFDME 486

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  V+          +  +  +L++E+         +    ++L   LF    L    
Sbjct: 487 QNGIRVEADALKQYGDQLAGKIAELEKEIYEEAG-ETFNINSPKQLGVVLFENMKLPGGR 545

Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+   +T   VL       P   ++   R   ++      + L   +  DGR+ G    
Sbjct: 546 KTKTGYSTAADVLEKLAPEHPVVAKILEYRQY-TKLKSTYADGLANYIQDDGRIHGKFNQ 604

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P                                 +R   I 
Sbjct: 605 -TITATGRISSTEPNLQNIPVRMELGR-------------------------LIRKVFIP 638

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            EG + V AD + IE RVLA  +G++  ++A++   D++  T ++ F++   +VT  QR 
Sbjct: 639 EEGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQSDIHRITASQVFHIPFDEVTPQQRR 698

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y            +  L+                                
Sbjct: 699 NAKAVNFGIVYG-----ISSFGLSQDLS-------------------------------- 721

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                         +    +   +  +      L  A     E G  +            
Sbjct: 722 -------ITRKEAAKYIDDYFATYPGIKTF---LDHAVTHAKEEGYVVTL---------- 761

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                         GR     ++ ++     +      R            +Q  + DI+
Sbjct: 762 -------------FGRRRPVPELSSSNFMQRSF---GERVAMNSP------IQGAAADII 799

Query: 611 AEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
              M+         K    +VL VHDE++ E  + +      +    M         +PL
Sbjct: 800 KIAMIRVNQRLKDQKMKSRLVLQVHDELLIEAYEPELDEVQNILKEEMEHAAE--LKVPL 857

Query: 664 KAEGYESKRY 673
           + + +    +
Sbjct: 858 EIDMHTGDNW 867


>gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
 gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01]
          Length = 877

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 93/633 (14%), Positives = 182/633 (28%), Gaps = 132/633 (20%)

Query: 56  VLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            L E LEN     +  ++   +   V      +++        ++ +        ++ V 
Sbjct: 358 ELIEWLENDHNNKIVFDAKKTY---VAAHRLEINLQHID-FDVMLASYIIDPSRTIEDVQ 413

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG--DVTVTREI 171
             +   +Q     K  IA + KG+  +   D     H  A      Y        +    
Sbjct: 414 SVVSYYNQ--NFVKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAI-YNCKPLMSDI-LSD 469

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
             +++ L++ E  L  +   + + G   DV     +   +  +   L  E+         
Sbjct: 470 HNQMDLLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAG-ESF 528

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF    L +   T+   +T   VL   +   P    +   R   S+   
Sbjct: 529 NINSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQ-LSKLQS 587

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L + ++ D R+        A +TGR S      QN+P       +          
Sbjct: 588 TYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSIDPNLQNIPIRLEEGRK---------- 636

Query: 349 SITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R      S+   ++ AD + IE RVLA M  ++   +AF  G+D
Sbjct: 637 ---------------IRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGDD 681

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T  + F V   QV    R   K +                    G++    +    
Sbjct: 682 IHAATAMKVFGVEKDQVNDLMRRQAKAVNF--------------GIVYGISDYGLSQ--- 724

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                               +     +      V +   ++   
Sbjct: 725 ---------------------------NLGITRKKAKAFIDDYLASFPGVKQYMTDI--- 754

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            +    NG                              R     D+ +            
Sbjct: 755 VKDAKANGYVETLLH-----------------------RRRYIPDITSRNF---NLRSFA 788

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDE 641
            R            +Q  + DI+   M+   K          ++L VHDE++ E P ++ 
Sbjct: 789 ERTAMNTP------IQGSAADIIKLAMVQFDKNVRETNYHAKLLLQVHDELIFEVPKSEV 842

Query: 642 FNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            + S  +  +M +  + A  +PL  +      +
Sbjct: 843 QDFSEFVEEIMDNALTLA--VPLLVDSSYGATW 873


>gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 880

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 86/679 (12%), Positives = 187/679 (27%), Gaps = 148/679 (21%)

Query: 19  CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH------- 71
            GI    E   ++     + +   E++  +    + +   + L                 
Sbjct: 322 VGIELLEEKGQILGLGLAWGEEKTEVYSILPQGFVTE---DYLIEKTQEFCQQGKLIASL 378

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALK---LSSQKMEE 125
           N       +    +L    +      + A              + +        +++   
Sbjct: 379 NIK----AMLRYMDLK-SHNDMFDAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLL 433

Query: 126 GK-ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           GK   I    + E                 R             +E++         E  
Sbjct: 434 GKLSYIKAANEKEEELAKSVCYMAYTALKSRTSLLEALE-KENMKELYT------DMEMP 486

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L +    +   G  V+        + + V    L++E+         +    ++L   LF
Sbjct: 487 LLFTLADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQAG-EEFNINSPKQLGVILF 545

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +  L     T+   +T   VL            +   R   ++      + L   +  D
Sbjct: 546 EKLELPGGKKTKTGYSTAADVLEKLAPEHKLVADILEYRQ-LTKLKSTYADGLANYIAED 604

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  T      + TGR S      QN+P  +                            
Sbjct: 605 GRIHSTFNQ-TITATGRISSTEPNLQNIPVRTELGR------------------------ 639

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   I  +G   + AD + IE RVLA M+G++  ++A++  +D++  T ++ F++  
Sbjct: 640 -LLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPF 698

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            +VT  QR   K +   + Y            +  L+                       
Sbjct: 699 DEVTPLQRRNAKAVNFGIVYG-----ISSFGLSQDLS----------------------- 730

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                  +  +++ Q + ++    + L +  ++           
Sbjct: 731 ----------------ISRKEAAQYIESYFQTYPKIKGFLDGLVEEAKE----------- 763

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             +     R     ++ ++     +      R            
Sbjct: 764 ---------------KGYVSTLFHRRRPVPELKSSNFMQRS---FGERVAMNSP------ 799

Query: 602 VQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + DI+   M+   K          +VL VHDE++ ET   +    S +    M   
Sbjct: 800 IQGTAADIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEA 859

Query: 655 PSWAKGLPLKAEGYESKRY 673
                 + L+ + +  + +
Sbjct: 860 AH--LSVALEIDMHTGENW 876


>gi|189485016|ref|YP_001955957.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170286975|dbj|BAG13496.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 908

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/676 (11%), Positives = 193/676 (28%), Gaps = 153/676 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHD---------PVMPQVLKEALENTDVTIVAHNSYFERTV 79
            ++  +   ++     +   H+              +      +  +  + H+   ER +
Sbjct: 351 RIVGISLCVEN-KAFYFPIGHNDLTARQVIFEDFKDIFAPLFFSDKIKKIGHDLKQERNI 409

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
                 + +  + +   ++ +       +               +  KE +       ++
Sbjct: 410 YS-MSGVGLN-NIYFDIMLASYCLNPAKSH-----------CITDMSKEYLDFTAGVGSY 456

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLD 189
                +       +     +Y          I+K  +               E  L  + 
Sbjct: 457 AWKGSKKSSFANSSIEAGAKYANSISAAVFAIYKIFDFQIKEKKLSLLFFDTEMSLVEIL 516

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  VD+      N+ +  E   ++  +  +      +    ++L + +F +  L
Sbjct: 517 SEMEISGIKVDLPFLRNFNEKIVYELKIIENNIYKIAGI-EFNINSQKQLSSVMFEKLNL 575

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T + VL           ++   R    +     ++ L +     G    
Sbjct: 576 PVIKKTKTGYSTDEEVLVELSS-HEFPAEILKYR-ELQKLKSTYIDPLTDYCVYYGSRIH 633

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T+     + TGR S      QN+P  S   +E                          R 
Sbjct: 634 TIFNQAVTTTGRLSSTEPNLQNIPVKSAYGKEF-------------------------RK 668

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
             +    K  + AD + I+ RVLA ++ +   ++AF+ G D++  T    FN+       
Sbjct: 669 AFVPERNKIFISADYSQIDLRVLAHISQDTKFIEAFKAGTDIHSATAREIFNIPEGYPLT 728

Query: 427 D-QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           D  R+  K +   + Y            +  LN+                          
Sbjct: 729 DSLRSAAKSINFGIIYGMSP-----FGLSKQLNIP------------------------- 758

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                             +     + +++ +V     ++ +                   
Sbjct: 759 --------------FGKAKEYIDGYFERYDKVKFWMEQIVKQA----------------- 787

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                      +  +   +GR     ++ +  +      +   R            VQ  
Sbjct: 788 ---------SEDGYVRTITGRIRYIPELRSTNA---QVRKAGERMA------LNTPVQGS 829

Query: 606 SRDILAEGMMNATK----AGYD--IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA 658
           S DI+   M++        GY   ++L VHD+++ E PD +  N  S++ + M +     
Sbjct: 830 SADIIKIAMISVYNEIKLKGYKSLMLLQVHDDLLFEVPDGESENMISIIKNKMENPLH-- 887

Query: 659 KGLPLKAEGYESKRYR 674
             +P+  +    + + 
Sbjct: 888 LSIPIVVDIKAGRNWG 903


>gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)]
          Length = 876

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 182/668 (27%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 328 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 381

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + + +           
Sbjct: 382 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRSDEAVYGKGA-- 433

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 434 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 492

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 493 VKVDTKRLEQMGEELAEQLRTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPILKKTK 551

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +  D +   T+     
Sbjct: 552 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 611 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 646 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 705

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 706 KAVNF--------------GIVYGISDYGLAQ---------------------------- 723

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 724 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 768

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 769 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 806

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 807 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 864

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 865 DYHYGPTW 872


>gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
 gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab]
          Length = 928

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 97/695 (13%), Positives = 196/695 (28%), Gaps = 160/695 (23%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKE 59
           D ET S              D  ++     + +  V      H         ++ Q L+ 
Sbjct: 364 DTETTSLDP----------RDAQLVGIGCCWSERDVAYLPLGHRQGSNLDWDLVKQSLQP 413

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALK 117
             E+ +      N  ++ ++ +A   + +   +    ++ +          L  +  +  
Sbjct: 414 IWEDPNRPKSLQNCKYDLSIFRAHS-IRLQGIQ-FDPMLASYVLNPEASHNLADLAASY- 470

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                      L       E      +              EYC  D      +   L  
Sbjct: 471 -----------LNLPTTSYEKLLGKAE---SLADLPIAKVAEYCGTDAYCAYRLVPILTE 516

Query: 178 LSSK------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
              +            E  L ++ + +   G  +D       +Q ++ E   L+Q+  + 
Sbjct: 517 KLQQTDPRLWNLFVQVELPLAHVLEEMEWVGIRIDTEFLRQFSQELEKELHSLEQKAYAQ 576

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNR 280
               V +    ++L + LF +  L +    +     +T   VL   +   P    +   R
Sbjct: 577 AG-EVFNLNSPKQLGSLLFEKLKLDVRKTRKTATGYSTDASVLEKLEGDHPVIETILQYR 635

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
              ++     ++ L   +  D GR+  +      + TGR S      QN+P  S      
Sbjct: 636 -TLAKLKSTYVDALPALVRRDTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRSE----- 688

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                S  +R   +  EG  L  AD + IE R+LA ++ E   +
Sbjct: 689 --------------------FSRRIRQAFVPQEGWLLASADYSQIELRILAHLSQEPTLI 728

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           + F +GED++  T    F     +VT ++R + K +   + Y  GA+ F + A      +
Sbjct: 729 ECFRSGEDVHTLTARLLF--EKQEVTSEERRLAKTINYGVIYGMGAQRFARTA-----GV 781

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +            E +     + R  +    +H   +  +G          R+    +S+
Sbjct: 782 SLAEAKEFLRRFNERYAGVFAYLRATEAFVEKHGYVETLLGR---------RRYFPNLSQ 832

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           L     QA  +   N         +      +K     L   L + RS +   V +   +
Sbjct: 833 LSGHRKQAELRAAVN------APIQGSASDIIKVAMVRLQEKLQNFRSRLLLQVHDELVF 886

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               +                                        ++             
Sbjct: 887 EVEPSEWQ---------------------------------DLRPLIQ------------ 901

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                      M         +PL  +      ++
Sbjct: 902 ---------REMEEAVP--LSIPLVVDIQIGHNWK 925


>gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1]
          Length = 833

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 100/610 (16%), Positives = 189/610 (30%), Gaps = 151/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL     + +        L++A      +   + V         +    + L++   
Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGEFTEDAAERALLSE-- 412

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                               RLF             +++        E+ L  +   +  
Sbjct: 413 --------------------RLFQNLFPRLSEKLLWLYQ------EVERPLSRVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--- 251
           RG  +DV L   L+  ++ E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEIFRLAGHP-FNLNSRDQLERVLFDELGLTPVGR 505

Query: 252 -EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T Q  L + +   P    +   R   S+     L+ L   ++   GRL    
Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELILQYR-ELSKLKSTYLDPLPRLVHPRTGRLHTRF 564

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 598

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A EG  L+ AD + IE RVLA ++G++   + F  G+D++  T A  F + PA V    
Sbjct: 599 VAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKM 658

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++ +  +  +  +                   
Sbjct: 659 RRAAKTVNF--------------GVLYGMSAHRLSQELGID------------------- 685

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          E   + + Q   +V      + +  E+    G             
Sbjct: 686 -----------YKEAEAFIERYFQSFPKVRAW---IERTLEEGRTRGYVETL-------- 723

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+ +    + +      R            VQ  + D
Sbjct: 724 ---------------FGRRRYVPDLASR---VRSVREAAERMAFNMP------VQGTAAD 759

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663
           ++   M+         G  ++L VHDE+V E P+   E   +++  +M +   +   +PL
Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENA--YPLDVPL 817

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 818 EVEVGVGRDW 827


>gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23]
 gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23]
          Length = 888

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 92/652 (14%), Positives = 198/652 (30%), Gaps = 132/652 (20%)

Query: 39  DHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
            +    +    D  + +   LK+ L++  V     N+  +   L     + +        
Sbjct: 347 GNEGHWF-ISRDVDLLKEAPLKDLLQSDSVKKNVFNAKAQIVGLHR-LGIPLENIN-FDL 403

Query: 97  LVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           L+ +           L  V +       + +E           +      D    +H   
Sbjct: 404 LLASYLLNTNDNSNDLGQVAQEHGYDDVRTDE----EVYGKGAKRTVPDDDETFFSHLAT 459

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
                E  + D+    +  K+    +  E  L  +   +   G  VD      +   +  
Sbjct: 460 KARAIEQLRKDLFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTE 519

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270
             ++++ ++         +    ++L   LF +  L +   T+   +T   VL      +
Sbjct: 520 RLSEIESQIYQEAG-EEFNINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKS 578

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P   Q+   R   ++     +  L++ ++S+ +   T      ++TGR S      QN+P
Sbjct: 579 PIVEQILEYRQ-IAKLQSTYIAGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP 637

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVL 389
                                            +R   + S EG ++  +D + +E RVL
Sbjct: 638 VRLPEGR-------------------------LIRKAFVPSHEGWQIFSSDYSQVELRVL 672

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAF 448
           A + G++   + F+ GED++ +T  R F++AP  ++ ++ R   K +   + Y       
Sbjct: 673 AHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGIS---- 728

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   ++++         +   E+   + +         E+   +            
Sbjct: 729 -DYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETIT--------- 778

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                                            +RR +P ++ K                
Sbjct: 779 --------------------------------HRRRYLPDIHAKSFSKRSF--------- 797

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GY 622
                   R+ +NT                   +Q  + DI+   M+             
Sbjct: 798 ------AERTAMNT------------------PIQGSAADIIKIAMIRMQDELEKRHLKA 833

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L +HDE+V E P  +    S L   +M S       +PLK +      +
Sbjct: 834 KMLLQIHDELVFEAPKEEIPVLSELVPKVMDSAVK--LDVPLKVDSKYGDTW 883


>gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT]
 gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT]
          Length = 878

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 88/654 (13%), Positives = 187/654 (28%), Gaps = 155/654 (23%)

Query: 40  HPVELWDC-----VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW- 93
             V +               ++LK   EN  +  V H+S     VLK     +I      
Sbjct: 356 EEVFVISANEIKDKDGAKYFEILKNLFENEKIKKVCHDSKKVYVVLKKH---NIAAKNIA 412

Query: 94  ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
             T + A       +   LK + E + L S K ++  + I      +      +++    
Sbjct: 413 FDTKIAAYLLQPSKSDYMLKDLIEEMLLLSLKDDDNIK-INETYYIKDVYEKLEKDIKKS 471

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                L+                        E  L  +  ++   G+ VD      + + 
Sbjct: 472 NMEELLYT----------------------VELPLIEVLASMECEGFRVDENRLTEIGEK 509

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
              E   L++E+  L      + +  ++L   LF +  L +   T+   +T   VL   K
Sbjct: 510 FKKEIETLEKEIHEL-ADEEFNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLK 568

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P   ++   R   ++     +  L   ++ D ++  +      + TGR S      Q
Sbjct: 569 DSHPIIEKIIEYRQ-ITKLDSTYVEGLKNVIDEDAKIHSSFNQTVTT-TGRLSSTEPNLQ 626

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEA 386
           N+P       E                         +R   + +  +  +  AD + IE 
Sbjct: 627 NIPIKHEMGRE-------------------------IRKVFVPNNDESVIFSADYSQIEL 661

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+L+ +A ++  + AF+  +D++  T +  F V   +VT   R+  K +   +       
Sbjct: 662 RILSHIADDEKLIDAFKHHKDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIV------ 715

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                                                         + +        +  
Sbjct: 716 --------------------------------------YGIGAFSLSKDINVSRKEAKEY 737

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              +  ++  V +  +E+    E                           +  +     R
Sbjct: 738 IDTYFSRYPNVKKYIDEIISKAE--------------------------VDGFVTTILNR 771

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                ++ +    +        R            +Q  + DI+   M+           
Sbjct: 772 KRYIPEIQSRNKIVRG---FGERLAMNTP------IQGSAADIIKLAMVEVYNELKNRNL 822

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
              ++L VHDE++      +       +   M +       +PL+A+    + +
Sbjct: 823 KSTLILQVHDELILNVYKDELEEVKEMVVDKMENVMKLL--VPLEADVNVGETW 874


>gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
 gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293]
          Length = 911

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 88/686 (12%), Positives = 192/686 (27%), Gaps = 155/686 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-------VHDPVMPQVL 57
            +D ET S   +              + F+                      D  + + L
Sbjct: 344 ALDIETDSLDAMLANP----------VGFSLAVSPKQAAYLPLIAEGQRKFDDDAVRERL 393

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE 114
                +  V I+ HN  ++  VL+    +   +     T+V A           +  +  
Sbjct: 394 VRLTSSPSVRIIGHNFKYDYKVLRRWGVVTKNLA--FDTMVAAWLLDTTANSYGMDPLAA 451

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +L     K    K+++              ++      +      Y   D  +T   ++ 
Sbjct: 452 SL--LGYKTISFKDVVP-------------KDGLFQDISVETATRYAAEDADITFRFYEL 496

Query: 175 LEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                            E  L  +   +   G  +         + ++ +   ++ ++  
Sbjct: 497 FRRQLKERGLEKLFFELEMPLVPILAEMECAGITLLSDRLEAYGRELEKDLGTIEDDIWQ 556

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
                  +    ++L+  LF E  L     T+   +T   VL    +     + V  +R 
Sbjct: 557 ACGHS-FNINSTKQLQQVLFEERKLTPIKKTKTGYSTDISVLEELAREDVVPLLVLRHR- 614

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++     ++ L + +N +     T      + TGR S      QN+P           
Sbjct: 615 SLAKLKSTYVDALPKLVNPETGRIHTQLIQTGTATGRLSSKDPNLQNIPIRDEDGRR--- 671

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +RS  + +EG   + AD + IE  VLA ++ +    +A
Sbjct: 672 ----------------------IRSAFVPAEGNLFISADYSQIELVVLAHLSEDPELSQA 709

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F +G D++  T +  F+V+ A V+ +QR I K +   + Y   A    +      L ++ 
Sbjct: 710 FRSGGDVHRRTASLIFDVSEADVSSEQRRIAKTINFGVMYGMSAFRLSRE-----LGISR 764

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                  ++    +   ++F R + +   +  +    +G           +    ++   
Sbjct: 765 SRADSFISAYFRRYFRIQSFMRKVVQETEQSGVSKTLLGRE---------RSIPAINSRN 815

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                  E            +      +         + ML   R +   ++ +      
Sbjct: 816 KTEKAGAE------------RIAVNTPIQGTAADIVKLAMLAVSRRMASEELKSK----- 858

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTD 640
                                           M+                 ++ E P  +
Sbjct: 859 --------------------------------MVLQIHDE-----------LLFEVPFDE 875

Query: 641 EFNAS-MLYHLMTSNPSWAKGLPLKA 665
                 +L   M S       +PL+ 
Sbjct: 876 ADRMEGLLKEEMESAVK--LSVPLRV 899


>gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
 gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270]
          Length = 888

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 88/663 (13%), Positives = 197/663 (29%), Gaps = 130/663 (19%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
             Y +   +    +   +    +              E   N D+ I+ ++   E   L 
Sbjct: 341 YIYRKKFYI-GI-YSNFNKKAYICKNFKLSDF-----EKFCNLDIKIIGYDIKEE---LF 390

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
                ++    +   ++L            + +             + +    K +    
Sbjct: 391 FALKNNLEFKNYEDVMILEYLIDSNKGNYDILKVSNEFLNLEILDLKEMLGKGKNKKTFF 450

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
             + +      +  +F      D+ +   +    +    + E+ L  +   +   G  VD
Sbjct: 451 ELEEDIIFKFISQNVFAISALYDIFIEKAKENNLISLYENVEKPLVKVLADMEKTGVLVD 510

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 LN+         +Q++  L    V +    ++L   LF + GL +   T+   +
Sbjct: 511 RNKIIELNEEYSKLAYLYEQKVYELAG-EVFNLNSPKQLGVILFEKIGLPVVKKTKTGYS 569

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL    K       +   R   ++     L+ ++E +  DGR+R + + +  + TG
Sbjct: 570 TDVEVLEKLSKKHEIVDYILKYR-SLNKLISTYLDGILEYIMDDGRVRTSFKQMI-TATG 627

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P  S   +                          +R   +A + K  +
Sbjct: 628 RLSSVDPNLQNIPIRSEEGK-------------------------NIRKVFVADKNKVFI 662

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA ++ +   + +F+   D++  T +  F V   +VT +QR   K +  
Sbjct: 663 DADYSQIELRVLAHLSKDSVMIDSFKNDLDIHYKTASEVFGVPINEVTDNQRRSAKAVNF 722

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y              GL+ +                                     
Sbjct: 723 GIVYGIS---------DYGLSKD-----------------------------------LN 738

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                  +    +   +  +     E+    ++                          +
Sbjct: 739 ITRNEARQYIDGYLNTYPSIKSYMEEIVNKAKK--------------------------D 772

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
             +     R     ++ +             R            +Q  + DI+   M+  
Sbjct: 773 GFVTTILDRKRYIPEINSKNF---NIRSFGERIA------LNTPIQGSAADIIKLAMIKV 823

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYES 670
            +          ++L +HDE++ E  ++++     +  + M +   +   LPLK +  E 
Sbjct: 824 YERLKIEKVNAKLILQIHDELIVECEESEKETVKKILKNSMENV--YKLDLPLKVDICEG 881

Query: 671 KRY 673
           + +
Sbjct: 882 RNW 884


>gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus]
          Length = 878

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 182/668 (27%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 330 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 383

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + + +           
Sbjct: 384 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRSDEAVYGKGA-- 435

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 436 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 494

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 495 VKVDTKRLEQMGEELAEQLRTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 553

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +  D +   T+     
Sbjct: 554 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 612

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 613 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 647

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 648 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 707

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 708 KAVNF--------------GIVYGISDYGLAQ---------------------------- 725

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 726 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 770

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 771 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 808

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 809 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 866

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 867 DYHYGSTW 874


>gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 887

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/676 (14%), Positives = 207/676 (30%), Gaps = 140/676 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73
           L   G   +      + F+   +D          D  + +   +K  LE+  +     N 
Sbjct: 330 LEMLGANYHLAPF--VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 380

Query: 74  YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            F+     V      +      +   L+ +      +    +GE   L        K  +
Sbjct: 381 -FDLKRTMVAAHRLGIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 436

Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
             + KG++     D ++  +  A +    E  K  +    +  ++     + E     + 
Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLKDHEQDALFDTIEIPTARVL 496

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V+ +    L     V+  KL+ ++         +    ++L   LF + GL
Sbjct: 497 ARMEMNGMKVEASTLIQLQNEFAVKLKKLEDKIYGQAG-EKFNLNSPKQLGHILFEKLGL 555

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL   K  +P   ++ + R   ++     +  L++ +  DGR+  
Sbjct: 556 PVIKKTKTGYSTSVEVLDQLKTQSPIVSKILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 614

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P  +   +                          +R 
Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             +       +   D + +E RVLA ++G+Q   +AF+TG D++  T  + F++  P +V
Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEV 708

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R   K +                    G++    +                     
Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++ ++ +  N   +A ++  + G A       
Sbjct: 735 ----------NLGISRKRAQEFIDNYFEQYPQIKDYMN---KAVQEARDKGYAETIMH-- 779

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R     D+   +    T      R            +Q 
Sbjct: 780 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 809

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M S    
Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868

Query: 658 AKGLPLKAEGYESKRY 673
              +PL A+      +
Sbjct: 869 -LDVPLIADSGWGHNW 883


>gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI
           polymerase 1
 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis]
          Length = 833

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 100/610 (16%), Positives = 189/610 (30%), Gaps = 151/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL     + +        L++A      +   + V         +    + L++   
Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTHPEGVARRYGGEFTEDAAERALLSE-- 412

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                               RLF             +++        E+ L  +   +  
Sbjct: 413 --------------------RLFQNLFPRLSEKLLWLYQ------EVERPLSRVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--- 251
           RG  +DV L   L+  ++ E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHP-FNLNSRDQLERVLFDELGLTPVGR 505

Query: 252 -EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T Q  L + +   P    +   R   S+     L+ L   ++   GRL    
Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELILQYR-ELSKLKSTYLDPLPRLVHPRTGRLHTRF 564

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 598

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A EG  L+ AD + IE RVLA ++G++   + F  G+D++  T A  F + PA V    
Sbjct: 599 VAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKM 658

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++ +  +  +  +                   
Sbjct: 659 RRAAKTVNF--------------GVLYGMSAHRLSQELGID------------------- 685

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          E   + + Q   +V      + +  E+    G             
Sbjct: 686 -----------YKEAEAFIERYFQSFPKVRAW---IERTLEEGRTRGYVETL-------- 723

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+ +    + +      R            VQ  + D
Sbjct: 724 ---------------FGRRRYVPDLASR---VRSVREAAERMAFNMP------VQGTAAD 759

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663
           ++   M+         G  ++L VHDE+V E P+   E   +++  +M +   +   +PL
Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENA--YPLDVPL 817

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 818 EVEVGVGRDW 827


>gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus]
          Length = 834

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 97/610 (15%), Positives = 187/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL +   LD+        ++LA      +   + V         +    + L++   
Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAHRALLS--- 411

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
               H+ L  R +   +  W                ++  +E   S       +   +  
Sbjct: 412 -ERLHQNLLKRLQGEEKLLW----------------LYHEVEKPLS------RVLAHMEA 448

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253
            G  +DVA    L+  +  E  +L++E+  L      +    ++L+  LF E  L  L  
Sbjct: 449 TGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHP-FNLNSRDQLERVLFDELRLPALGK 507

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
             +    +T   VL + ++  P   ++  +R   ++     ++ L   ++   GRL    
Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELTKLKNTYVDPLPSLVHPRTGRLHTRF 566

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 567 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 600

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A  G  LV  D + IE RVLA ++G++  ++ F+ G+D++  T +  F V P  V    
Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 661 RRAAKTVNF--------------GVLYGMS------------------------------ 676

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E            + + Q   +V      + +  E+  + G             
Sbjct: 677 AHRLSQELSIPYEEASAFIERYFQSFPKVRAW---IEKTLEEGRKRGYVETL-------- 725

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 726 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 761

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE++ E P       + L    M      A  +PL
Sbjct: 762 LMKLAMVKLFPRLRQMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPL 819

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 820 EVEAGIGEDW 829


>gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20]
 gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20]
          Length = 881

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 87/658 (13%), Positives = 187/658 (28%), Gaps = 134/658 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
               + +          +     V    L++ +     +++      L        P   
Sbjct: 337 VGVAWGNQEKIYVSNREELFESPVFTNWLKDEERKKFVYDAKRTYVALNRYT--TAPKGI 394

Query: 93  WICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
               L+ A              V       + + +E              + L    +  
Sbjct: 395 AFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDE------AIYGKGAKKGLPADEEDF 448

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTL 207
                R           +T E+  + +       E  L  +   +   G  VD +  H +
Sbjct: 449 FAHLARKVAAITNLTPKLTEELAAKNQTALFEEMELPLSMILADMEITGIKVDASRLHQM 508

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
                    ++++++ +       +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 509 KGEFAQRLHEIEEKIYAEAG-ETFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 567

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K+  P    +   R   ++     +  L++ +  DG++         ++TGR S    
Sbjct: 568 QLKEQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQGDGKVHTRYVQ-TLTQTGRLSSVDP 625

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAG 383
             QN+P       +                         +R   +  E    +  +D + 
Sbjct: 626 NLQNIPIRLEEGRK-------------------------IREAFVPREADWVIYSSDYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442
           IE RVLA ++ +    +AF  G+D++ +T  R F +     VT + R   K +       
Sbjct: 661 IELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNF----- 715

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G++    +                                      A
Sbjct: 716 ---------GIVYGISDYGLSQ------------------------------NLGITRKA 736

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            ++    + +K+  V     ++ +  +                              +  
Sbjct: 737 AQQYIDTYFEKYPGVKTYMEDVVREAKD--------------------------KGYVET 770

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617
              R     D+ +    + T      R            +Q  + DIL   M++      
Sbjct: 771 LYHRRRYLPDINSRNFNIRTF---AERTAINTP------IQGSAADILKIAMIDLVKRLK 821

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             K    ++L VHDE+V E P+++     +++  +M      A  +PL  +    K +
Sbjct: 822 EEKLAATMLLQVHDELVFEVPESELPRLDALVKEVMEQAV--ALHVPLLTDSNWGKTW 877


>gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
 gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678]
          Length = 880

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 93/646 (14%), Positives = 199/646 (30%), Gaps = 141/646 (21%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
           H   + + ++  LE+ D+  + +    +   LK    +D+  +      +        ++
Sbjct: 351 HGDDILK-IRTILEDEDIEKIGYEMKADYVALKPY-GIDLR-NMAFDIAIAEYVIDSKTS 407

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                 +  + S   +   + I      E       +     +       +Y  G ++  
Sbjct: 408 -----TSYDIDSISSKYIYKTI---MSKEDLLGKGAKALDYRQVDLEKLDQYVSGMLSTI 459

Query: 169 REIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
              + +++ +  ++Q           L  +   +   G CVD  +   L +  D    K 
Sbjct: 460 IGSYPKMKKIIDEDQLSMLFYDVEMPLVEVLAEMEYAGICVDRDILSNLAKDFDEIIDKT 519

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275
           ++ +  L      +    ++L   LF + GL +   T+   +T   VL   +        
Sbjct: 520 EKNIHELAGQD-FNVNSPKQLGHILFEKLGLPVIKKTKTGYSTNAEVLEKLRDKHEIINM 578

Query: 276 VFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +   R    +     ++ +   +N  DGR+  +      + TGR S      QN+P  + 
Sbjct: 579 ITEYRSVV-KLKSTYVDGIEALVNAKDGRIHSSFNQ-TITTTGRISSTDPNMQNIPVRTD 636

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R   IA +   LV AD + +E RVLA M+ 
Sbjct: 637 MGR-------------------------QIRKVFIAGDSMSLVDADYSQVELRVLAHMSQ 671

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   ++AF +GED++  T ++ FNV   QVT + R+  K +   +               
Sbjct: 672 DPHMIEAFNSGEDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGII-------------- 717

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                           ++    A +        +   +++  K+
Sbjct: 718 ------------------------------YGKSDFGLAQDLNISQKKAKEYIESYFNKY 747

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             +    + +     +  E G +                            R     ++ 
Sbjct: 748 ETIKAFMDHI---VSEAEEKGYSTTIFN-----------------------RRRYIPEIK 781

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
           ++         +  R            +Q  + DI+   M+N             ++L V
Sbjct: 782 SSNFVEKN---RGKRAAMNAP------IQGSAADIIKIAMVNVYNRLKEKGLKSRLILQV 832

Query: 629 HDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           HDE++ E    +      +L   M +      G+ LK +    K +
Sbjct: 833 HDELIVEATADELTQVEVLLREEMENAV--NLGVDLKVDLNIGKSW 876


>gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
 gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A]
 gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112]
          Length = 888

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 91/632 (14%), Positives = 193/632 (30%), Gaps = 129/632 (20%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVG 113
           LK+ L++  V     N+  +   L     + +        L+ +           L  V 
Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHR-LGIPLENIN-FDLLLASYLLNTNDNSNDLGQVA 423

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +       + +E           +      D    +H        E+ + D     +  K
Sbjct: 424 QEHGYDDVRTDE----EVYGKGAKRAVPDDDETFFSHLATKARAIEHLRKDFFAKLDENK 479

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +    +  E  L  +   +   G  VD      +   +    ++++ ++         + 
Sbjct: 480 QTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAG-EEFNI 538

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF +  L +   T+   +T   VL      +P   Q+   R   ++     
Sbjct: 539 NSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQILEYRQ-IAKLQSTY 597

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++ ++S+ +   T      ++TGR S      QN+P                    
Sbjct: 598 ITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGR------------- 644

Query: 351 TSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   + S EG ++  +D + +E RVLA + G++   + F+ GED++
Sbjct: 645 ------------LIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIH 692

Query: 410 VTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            +T  R F++AP  ++ ++ R   K +   + Y               ++++        
Sbjct: 693 ASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGIS-----DYGLAQRIHVSRAEAHEFI 747

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
            +   E+   + +         E+   +                                
Sbjct: 748 QNYFHEFPGVKKYINDTIAFAKENGYVETIT----------------------------- 778

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                        +RR +P ++ K                        R+ +NT      
Sbjct: 779 ------------HRRRYLPDIHAKSFSKRSF---------------AERTAMNT------ 805

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEF 642
                        +Q  + DI+   M+              ++L +HDE+V E P  +  
Sbjct: 806 ------------PIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELVFEAPKEEIP 853

Query: 643 NASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             S L   +M S       +PLK +      +
Sbjct: 854 ILSELVPKVMDSAVK--LDVPLKVDSKYGDTW 883


>gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10]
 gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30]
 gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10]
          Length = 881

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 87/658 (13%), Positives = 187/658 (28%), Gaps = 134/658 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
               + +          +     V    L++ +     +++      L        P   
Sbjct: 337 VGVAWGNQEKIYVSNREELFESPVFTNWLKDEERKKFVYDAKRTYVALNRYT--TAPKGI 394

Query: 93  WICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
               L+ A              V       + + +E              + L    +  
Sbjct: 395 AFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDE------AIYGKGAKKGLPADEEDF 448

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTL 207
                R           +T E+  + +       E  L  +   +   G  VD +  H +
Sbjct: 449 FAHLARKVAAITNLTPKLTEELAAKNQTALFEEMELPLSMILADMEITGIKVDASRLHQM 508

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
                    ++++++ +       +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 509 KGEFAQRLHEIEEKIYAEAG-ETFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 567

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K+  P    +   R   ++     +  L++ +  DG++         ++TGR S    
Sbjct: 568 QLKEQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQGDGKVHTRYVQ-TLTQTGRLSSVDP 625

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAG 383
             QN+P       +                         +R   +  E    +  +D + 
Sbjct: 626 NLQNIPIRLEEGRK-------------------------IREAFVPREADWVIYSSDYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442
           IE RVLA ++ +    +AF  G+D++ +T  R F +     VT + R   K +       
Sbjct: 661 IELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNF----- 715

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G++    +                                      A
Sbjct: 716 ---------GIVYGISDYGLSQ------------------------------NLGITRKA 736

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            ++    + +K+  V     ++ +  +                              +  
Sbjct: 737 AQQYIDTYFEKYPGVKTYMEDVVREAKD--------------------------KGYVET 770

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617
              R     D+ +    + T      R            +Q  + DIL   M++      
Sbjct: 771 LYHRRRYLPDINSRNFNIRTF---AERTAINTP------IQGSAADILKIAMIDLAKRLK 821

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             K    ++L VHDE+V E P+++     +++  +M      A  +PL  +    K +
Sbjct: 822 EEKLAATMLLQVHDELVFEVPESELPRLDALVKEVMEQAV--ALHVPLLTDSNWGKTW 877


>gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026]
          Length = 886

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 100/663 (15%), Positives = 206/663 (31%), Gaps = 141/663 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL- 86
           +  F+    +          DPV+ Q   L + LE+  +     N  F+    +    L 
Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENPLHKMLEDKTIKK---NV-FDIK--RTYVGLH 391

Query: 87  --DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             D+         L+ +      +    +GE   L        K  +  + KG+      
Sbjct: 392 RLDLKAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDD--YSVKTDLEVYGKGKKQAVPN 449

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
           D     H  A     E  K  +    +  ++ +   + E  + ++   +   G  V+ ++
Sbjct: 450 DNEFFEHLAAKVAVIEKLKTQLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASV 509

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
            + L     V+  +L+ ++         +    ++L   LF + GL     T+   +T  
Sbjct: 510 LNQLGNDFAVKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLGLPPIKKTKTGYSTSV 568

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL   K  +P   ++ + R   ++     +  L++ +  DGR+         + TGR S
Sbjct: 569 EVLEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLDCIQPDGRIHTRYLQ-TLTTTGRLS 626

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVV 378
                 QN+P  +   +                          +R   +    +G     
Sbjct: 627 SVDPNLQNIPTKTEEGK-------------------------QIRKAFVPSTKDGYIF-S 660

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMEL 437
            D + +E RVLA ++G++   +AF++G D++  T  + F++  P +VT   R   K +  
Sbjct: 661 CDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF 720

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++    +                                  
Sbjct: 721 --------------GIVYGISDYGLSK------------------------------NLG 736

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +   + + +++ ++        +A ++  ENG A                    
Sbjct: 737 ISRKQAKTFIENYFEQYPQIKNYM---DEAIKKARENGYAETIMH--------------- 778

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   R     D+ +             R            +Q  + DI+   M+N 
Sbjct: 779 --------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMINM 821

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670
            K          +VL VHDE++ + P  +      +   +M S       +PL A+    
Sbjct: 822 QKKLDELHLKTKMVLQVHDELIFDVPKDELNTIKKIVPEVMQSAVK--LDVPLIADSNWG 879

Query: 671 KRY 673
             +
Sbjct: 880 HNW 882


>gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1]
          Length = 832

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 185/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 396 -GEWTEEAGERATLSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 447 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHS-FNLNSRDQLERVLFDELGLPAIGK 505

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 506 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 564

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 598

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 659 RRAAKTINF--------------GVLYGMS------------------------------ 674

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +     + Q   +V      + +  E+    G             
Sbjct: 675 AHRLSQELAIPYEEAQAFIGRYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 723

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 724 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 759

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 760 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 817

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 818 EVEVGIGEDW 827


>gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3]
 gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3]
          Length = 876

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 328 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 381

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 382 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 433

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 434 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 492

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 493 VKVDTKRLEQMGEELAEQLRTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 551

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +  D +   T+     
Sbjct: 552 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 611 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 646 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 705

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 706 KAVNF--------------GIVYGISDYGLAQ---------------------------- 723

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 724 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 768

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 769 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 806

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 807 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 864

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 865 DYHYGSTW 872


>gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039]
 gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636]
 gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039]
          Length = 881

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 86/665 (12%), Positives = 189/665 (28%), Gaps = 142/665 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++  A+G +          +D  + +       + +       +++      L      
Sbjct: 335 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389

Query: 87  DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                      L+ A           ++ +      +  + +E              + L
Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +  +       R           +++E+  + +    ++ EL    +   +   G  VD
Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +         +++Q++         +    ++L   LF + GL +   T+   +
Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   ++  P    +   R   ++     +  L++ + SDG++         ++TG
Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   +  E    +
Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435
             +D + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R   K +
Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 A ++    + +K+  V E    + +  +                          
Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKN------------------------- 764

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +     R     D+ +             R            +Q  + DIL   M+
Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              K          ++L VHDE+V E P+ +  +   L   +M    S    +PL  +  
Sbjct: 815 ELDKRLKEAGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872

Query: 669 ESKRY 673
             K +
Sbjct: 873 WGKTW 877


>gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737]
          Length = 830

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 102/610 (16%), Positives = 180/610 (29%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL      +IP       ++LA      +   + V        ++    + L++   
Sbjct: 353 DLSVLALREGREIPPG--DDPMLLAYLLDPGNTNPEGVARRYGGEWKEDAAARALLSERL 410

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                              W+             R ++         E+ L  +   +  
Sbjct: 411 -------------------WQALYP---RVAEEERLLWLYR----EVERPLAQVLAHMEA 444

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +DV     L+Q V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 445 TGVRLDVPYLEALSQEVAFELERLEAEVHRLAGHP-FNLNSRDQLERVLFDELGLPPIGK 503

Query: 255 T-----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
           T      +T   VL   ++  P   ++   R    +     ++ L   ++   GRL    
Sbjct: 504 TEKTGKRSTSAAVLELLREAHPIVGRILEYR-ELMKLKSTYIDPLPRLVHPKTGRLHTRF 562

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 563 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 596

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F  G+D++  T A  F V P  V    
Sbjct: 597 IAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWMFGVPPEGVDGAM 656

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 657 RRAAKTVN--------------FGVLYGMS------------------------------ 672

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E            + + Q   +V      + +  E+  + G             
Sbjct: 673 AHRLSQELSIPYEEAAAFIERYFQSFPKVRAW---IAKTLEEGRKKGYVETL-------- 721

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 722 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 757

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+         G  I+L VHDE+V E P      A+ L    M     +   +PL
Sbjct: 758 LMKLAMVKLFPRLRPLGVRILLQVHDELVLEAPKARAEEAAQLAKETMEGV--YPLSVPL 815

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 816 EVEVGMGEDW 825


>gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus]
          Length = 878

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 330 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 383

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 384 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 435

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 436 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 494

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 495 VKVDTKRLEQMGEELAEQLRTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 553

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +  D +   T+     
Sbjct: 554 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 612

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 613 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 647

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 648 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 707

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 708 KAVNF--------------GIVYGISDYGLAQ---------------------------- 725

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 726 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 770

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 771 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 808

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 809 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 866

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 867 DYHYGSTW 874


>gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317]
 gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502]
 gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6]
 gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF]
 gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071]
 gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317]
          Length = 881

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 86/665 (12%), Positives = 189/665 (28%), Gaps = 142/665 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++  A+G +          +D  + +       + +       +++      L      
Sbjct: 335 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389

Query: 87  DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                      L+ A           ++ +      +  + +E              + L
Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +  +       R           +++E+  + +    ++ EL    +   +   G  VD
Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +         +++Q++         +    ++L   LF + GL +   T+   +
Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   ++  P    +   R   ++     +  L++ + SDG++         ++TG
Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   +  E    +
Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435
             +D + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R   K +
Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 A ++    + +K+  V E    + +  +                          
Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +     R     D+ +             R            +Q  + DIL   M+
Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              K          ++L VHDE+V E P+ +  +   L   +M    S    +PL  +  
Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872

Query: 669 ESKRY 673
             K +
Sbjct: 873 WGKTW 877


>gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52]
 gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61]
 gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52]
          Length = 876

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 328 HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 381

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 382 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 433

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 434 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 492

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 493 VKVDTKRLEQMGEELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 551

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +  D +   T+     
Sbjct: 552 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 611 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 646 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 705

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 706 KAVNF--------------GIVYGISDYGLAQ---------------------------- 723

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 724 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 768

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 769 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 806

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 807 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 864

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 865 DYHYGSTW 872


>gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68]
 gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
 gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933]
 gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410]
 gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408]
 gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68]
 gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162]
 gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01]
 gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B]
 gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A]
 gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C]
 gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04]
          Length = 881

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 86/665 (12%), Positives = 190/665 (28%), Gaps = 142/665 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++  A+G +          +D  + +       + +       +++      L      
Sbjct: 335 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389

Query: 87  DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                      L+ A           ++ +      +  + +E              + L
Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +  +       R           +++E+ ++ +    ++ EL    +   +   G  VD
Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISGIKVD 501

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +         +++Q++         +    ++L   LF + GL +   T+   +
Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   ++  P    +   R   ++     +  L++ + SDG++         ++TG
Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   +  E    +
Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435
             +D + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R   K +
Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 A ++    + +K+  V E    + +  +                          
Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +     R     D+ +             R            +Q  + DIL   M+
Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              K          ++L VHDE+V E P+ +  +   L   +M    S    +PL  +  
Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872

Query: 669 ESKRY 673
             K +
Sbjct: 873 WGKTW 877


>gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15]
 gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15]
          Length = 881

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 85/665 (12%), Positives = 184/665 (27%), Gaps = 142/665 (21%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++     +          D        Q     + +       +++      L      
Sbjct: 335 EIVGV--AWGTEKKIYVTNDLSVFEN--QAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389

Query: 87  DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                      L+ A           ++ +      +  + +E              + L
Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------TVYGKGAKKGL 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +  +       R           +++E+  + +    ++ EL    +   +   G  VD
Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +         +++Q++         +    ++L   LF + GL +   T+   +
Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   ++  P    +   R   ++     +  L++ + SDG++         ++TG
Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   +  E    +
Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435
             +D + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R   K +
Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 A ++    + +K+  V E    + +  +                          
Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +     R     D+ +             R            +Q  + DIL   M+
Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              K          ++L VHDE+V E P+ +  +   L   +M    S    +PL  +  
Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKKVMEQAVS--LHVPLITDSS 872

Query: 669 ESKRY 673
             K +
Sbjct: 873 WGKTW 877


>gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3]
 gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3]
          Length = 656

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 184/705 (26%), Positives = 282/705 (40%), Gaps = 84/705 (11%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLK 58
             LF+DFET S  DLT+ G+ +Y  D     + F F        +LW+      +P+V+ 
Sbjct: 4   RLLFLDFETSSHTDLTEHGLGRYLADQSTRAYCFTFRLPGMSTADLWEV--GQRVPEVIT 61

Query: 59  EALENTDVTIVAHNSYFER----TVLKACFNL----DIPIHRWICTLVLARSNGLPSALK 110
             +       VAHN+ F+     TVL+         ++ I +  C+   AR NGLP +L 
Sbjct: 62  RHVR-AGHLFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLA 120

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
              EAL L  QK  EG + +             D    +H E +    +Y   D      
Sbjct: 121 GACEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFARTYKYALIDTDAMVG 174

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +++   PL ++EQ  + +D  IN RG  VDV  A  +  +      +LD E+  LT G V
Sbjct: 175 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGV 234

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   +EK+K       G  ++D    T +++ ++   L     Q+   R+ ASR+   K
Sbjct: 235 LAVSEVEKIK-TYAATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--K 290

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL----PRPSRSHEELDQIITHL 346
            +  +   +  GRL+ +  + GA      +      Q L    PRP +   + + I+   
Sbjct: 291 KSAAILRAHVGGRLQHSTIYHGALSGRSTARGAGGAQTLNTARPRPGKKTADCEAILDAC 350

Query: 347 PTSITSD------PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                +          L  ++D  R    A   G  LV ADL+GIEAR   W+AG+   L
Sbjct: 351 LRHDRAYLSSPEVGPILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLELL 410

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AFE G D Y    A  F V    VTKDQR IGKV  LAL Y GGA AF  MA+  G++L
Sbjct: 411 EAFEKGVDPYKLAAAAIFQVTYEAVTKDQRQIGKVAMLALTYGGGAGAFVSMAANYGVHL 470

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       + +   WR        
Sbjct: 471 PPEQ---------------------------------------VDEIVLNWRAARPAFER 491

Query: 520 LWNELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--- 574
            W+    +    ++  N +  +   R     V    D   L + LPSGR++ Y +     
Sbjct: 492 WWSLCEYSVLMALDQPNREITMPIGRDFCSHVTFVHDGRALRMQLPSGRAISYHNARLHL 551

Query: 575 --NNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                  +    +      T   K+   N+ Q ++RD+    +++  +    IV  V+DE
Sbjct: 552 EPGANVPIAIYDKPEGYIETLDRKILSNNMTQGLARDLFWSVLLDVDRVE-QIVHHVYDE 610

Query: 632 IVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            + E  +   E     L   M    +W  GLPL AEG+   R+RK
Sbjct: 611 ALLEVREEVAELRCDQLVERMCRGEAWCPGLPLGAEGWFGLRWRK 655


>gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
 gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082]
          Length = 881

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 86/665 (12%), Positives = 190/665 (28%), Gaps = 142/665 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++  A+G +          +D  + +       + +       +++      L      
Sbjct: 335 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389

Query: 87  DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                      L+ A           ++ +      +  + +E              + L
Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +  +       R           +++E+ ++ +    ++ EL    +   +   G  VD
Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISGIKVD 501

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +         +++Q++         +    ++L   LF + GL +   T+   +
Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   ++  P    +   R   ++     +  L++ + SDG++         ++TG
Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   +  E    +
Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435
             +D + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R   K +
Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 A ++    + +K+  V E    + +  +                          
Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +     R     D+ +             R            +Q  + DIL   M+
Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              K          ++L VHDE+V E P+ +  +   L   +M    S    +PL  +  
Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872

Query: 669 ESKRY 673
             K +
Sbjct: 873 WGKTW 877


>gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase
           Active Site
 gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active
           Site
 gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair
 gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site
 gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch
 gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A
           Dna Polymerase
 gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine
           At The Polymerase Active Site
          Length = 580

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 32  HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 86  WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +  D +   T+     
Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 410 KAVNF--------------GIVYGISDYGLAQ---------------------------- 427

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 569 DYHYGSTW 576


>gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
 gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612]
          Length = 885

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 101/681 (14%), Positives = 195/681 (28%), Gaps = 148/681 (21%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL----ENTDVTIVAHNS 73
           K  +  Y ED  V + A+      V  +  V  P M       L    E   +  V H+ 
Sbjct: 324 KLTVYAYREDDRVWVAAY-IGG--VYYF--VEKPAMVSAFFSGLGEIPEADSLQTVGHDL 378

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
                +        + ++    T + A             +   L +  M+   + I   
Sbjct: 379 KNLTHI--YHSQCSVIVNYTFDTYIGAYLLNPSD------QRYDLQTVAMKYLGDTIQSE 430

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQ 183
                      R +         F         V   + K L                E 
Sbjct: 431 EDFFGRGKTLVRAEDMDSARLAAFMVKNCE---VIHRLEKPLAEKIEADGMTGLFQNIEL 487

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            L  +  ++ + G+ VD+     L+   + +   L  E+  L      +    ++L T L
Sbjct: 488 PLLKIMASMEELGFKVDIHQLEELSVEFEKKIETLTSEIYELAEEDDFNINSTKQLGTIL 547

Query: 244 FLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           F +  L +   T+   +T   VL       P   ++ + R   S+        L++ ++ 
Sbjct: 548 FDKLKLPVVKKTKTGYSTNAEVLDQLVLFHPIIQKIIDYR-MISKLDSTYGKGLIKLVDP 606

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                 +      + TGR S      QN+P  +    E                      
Sbjct: 607 KTHKIYSTFNQTVTATGRLSSSDPNLQNIPVKTEMGRE---------------------- 644

Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   + S G + LV AD + IE RVLA ++G++  +  F   +D++  T +  FNV
Sbjct: 645 ---IRKVFVPSAGDRVLVDADYSQIELRVLAHLSGDENLIDTFVKNQDIHTRTASEIFNV 701

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
               V+++QR+  K +   L                                        
Sbjct: 702 PMDAVSREQRSHAKAINFGLI--------------------------------------- 722

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                  +       +        +     +  ++ +V E    +    ++    G    
Sbjct: 723 -----YGKQAFSLGKDLGITRGEAQSYIDLYFSRYPKVLEYMENIKAEAKE---KGYVTT 774

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                                    GR     ++ +    L        R          
Sbjct: 775 IW-----------------------GRRRYITEINSRNRMLVQA---GERMA------LN 802

Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMT 652
             +Q  + DI+   M+              ++L VHDE++ +T  T++     +L   M 
Sbjct: 803 TPIQGAAADIIKIAMIKVYDRLEREGLKSKLILQVHDELIIDTLKTEQETVMKLLVEEME 862

Query: 653 SNPSWAKGLPLKAEGYESKRY 673
           +       +PL  + +    +
Sbjct: 863 NAVD--LKVPLTVDAHAGDSW 881


>gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
 gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047]
          Length = 886

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 101/675 (14%), Positives = 206/675 (30%), Gaps = 139/675 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73
           L   G   +  D   + F+   +D          D  + +   LK  LE+  +     N 
Sbjct: 330 LAMLGANYHLADF--VGFSLKINDQ----IYVSKDVELLEEDNLKHLLEDEKIKK---NV 380

Query: 74  YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            F+     V      +      +   L+ +      +    +GE   L        K  +
Sbjct: 381 -FDLKRTTVGLHRLGIHAHGLDY-DMLLASYLVNNENNSNDLGEIAHL--YGDYSVKTDM 436

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
             + KG++     D    NH  +     E  K  +    +  ++ +   + E     +  
Sbjct: 437 EVYGKGKSEHIPDDDILFNHLASKVNAIEKLKEPLLKKLKEHEQDDLFDTIEIPTARVLA 496

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  V+ +    L     V+  +L+ ++         +    ++L   LF + GL 
Sbjct: 497 KMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYEQAG-ERFNLNSPKQLGHILFEKLGLP 555

Query: 251 LEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
           +   T+   +T   VL   K  +P   ++ + R   ++     +  L++ +  DGR+   
Sbjct: 556 VLKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHTR 614

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                 + TGR S      QN+P  +   +                          +R  
Sbjct: 615 YLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRKA 648

Query: 368 VIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVT 425
            +       +   D + +E RVLA ++G+    +AF+TG D++  T  + F++  P QVT
Sbjct: 649 FVPSEPDGYIFSCDYSQVELRVLAHVSGDAHMQEAFKTGYDIHSHTAMKIFHLDSPDQVT 708

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R   K +                    G++    +                      
Sbjct: 709 PLMRRHAKAVNF--------------GIVYGISDYGLSK--------------------- 733

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                             +     + +++ ++ +  N   +A ++  + G A        
Sbjct: 734 ---------NLGISRKRAKEFIDNYFEQYPQIKDYMN---KAVQEARDKGYAETIMH--- 778

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                               R     D+   +    T      R            +Q  
Sbjct: 779 --------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQGS 809

Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M S     
Sbjct: 810 AADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK-- 867

Query: 659 KGLPLKAEGYESKRY 673
             +PL A+      +
Sbjct: 868 LDVPLIADSGWGHNW 882


>gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 849

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 94/717 (13%), Positives = 196/717 (27%), Gaps = 184/717 (25%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCV----------------------HDPVM- 53
              G+    E+  V       ++  +                            +   + 
Sbjct: 253 KTAGVSLVTENGRVFGAGLALNEEEIYYIPVEGMITEGYLCGKLEGLLHKVSESNTENIM 312

Query: 54  ---PQVLKEALENT--DVTIVAHN----SYFERTV--------LKACFNLDIPIHRWICT 96
                 +K+  EN   DV     N      +++          L      D         
Sbjct: 313 KSNTDDVKKDPENEISDV-----NTDGTLKYDKKCVCALDVKALLKHIKSD-DPMAVFDA 366

Query: 97  LVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            V A              + +   L+ + +   +EL+         +   ++      E 
Sbjct: 367 GVAAYLLNPLKSSYTYDDMAKEY-LNGRILPAREELL--------GKKTVEKAWEESAEG 417

Query: 154 WRLFGEYCKGDVTVTRE-----IFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAHT 206
              +  Y        R+     +          + EL  +    ++   G  V      +
Sbjct: 418 LAAWACYMAYTALACRKPMCEALRDTGMWNVYTQIELPLIFTLDSMEKWGISVKSEELKS 477

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
             + + V   +L++++         +    +++   LF + GL     T+   +T   +L
Sbjct: 478 YGEKLSVRIGELEKQIWQQAG-EEFNINSPKQMGVILFEKLGLKGGKKTKTGYSTAADIL 536

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P    +   R   ++      + LV  +  DGR+  T      + TGR S   
Sbjct: 537 EKLAPEYPIVKDILEYRQ-LAKLKSTYADGLVGEIAEDGRIHSTFNQ-TITATGRISSTE 594

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P                                 +R   +  EG   + AD + 
Sbjct: 595 PNLQNIPVRMELGR-------------------------LIRKVFVPEEGYVFLDADYSQ 629

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA M+G++  ++A++  +D++  T +  F+V   +VT  QR   K +   + Y  
Sbjct: 630 IELRVLAHMSGDEKLIQAYKEAQDIHRHTASEVFHVPFDEVTDLQRRNAKAVNFGIVYG- 688

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                     +  L+                                             
Sbjct: 689 ----ISSFGLSQDLS---------------------------------------ITRKEA 705

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
               + + + + ++    + L    E+  E G                            
Sbjct: 706 AEYIERYFETYPKIKGFLDGL---VEEGKEKGYVTTM----------------------- 739

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
            GR     ++ +      +      R            +Q  + DI+   M    +    
Sbjct: 740 FGRRRPIPELKSGNFMQRSF---GERVAMNSP------IQGTAADIIKIAMNRVYRRLKD 790

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 +VL VHDE++ ET   +     ++L   M         + L+ + ++   +
Sbjct: 791 ENLKSRLVLQVHDELLIETCKEEIPQVSAILEEEMKGAAK--LSVELEVDMHQGNNW 845


>gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679]
 gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679]
          Length = 881

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 86/665 (12%), Positives = 189/665 (28%), Gaps = 142/665 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++  A+G +          +D  + +       + +       +++      L      
Sbjct: 335 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389

Query: 87  DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                      L+ A           ++ +      +  + +E              + L
Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +  +       R           +++E+  + +    ++ EL    +   +   G  VD
Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +         +++Q++         +    ++L   LF + GL +   T+   +
Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   ++  P    +   R   ++     +  L++ + SDG++         ++TG
Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQA-LTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   +  E    +
Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435
             +D + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R   K +
Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 A ++    + +K+  V E    + +  +                          
Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +     R     D+ +             R            +Q  + DIL   M+
Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              K          ++L VHDE+V E P+ +  +   L   +M    S    +PL  +  
Sbjct: 815 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 872

Query: 669 ESKRY 673
             K +
Sbjct: 873 WGKTW 877


>gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1]
          Length = 926

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 86/676 (12%), Positives = 192/676 (28%), Gaps = 158/676 (23%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMP-QVLKEALENTDVTIVAHNSYF---ERT------ 78
             +  A    +             +P + +      ++       + +   +        
Sbjct: 374 YCLGAAISTGEEETFFI--KAGENLPAKQILSMFTASEA------ASYATLDLKPQLAAL 425

Query: 79  -VLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALK---LSSQKMEEGKELIA 131
            +L+   N +I +      ++ A            + + +      + S+    GK  I 
Sbjct: 426 GLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIE 485

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE--IFKRLEPLSSKEQELWYL- 188
           +  K          + P     +  +  Y       T E  + +        E E+  + 
Sbjct: 486 QAMK----------DAPEAFLNYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVF 535

Query: 189 -DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
               + + G              + V   +L++++         +    ++L   LF + 
Sbjct: 536 TLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAG-EEFNINSPKQLGVILFEKL 594

Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            +     T+   +T   VL       P    +   R   ++      + LV  +  DGR+
Sbjct: 595 SMPYGKKTKTGYSTAADVLDRLAPEYPIVSDILEYRQ-LTKLKSTYADGLVNYIAKDGRI 653

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             +      + TGR S      QN+P                                 +
Sbjct: 654 HTSFNQ-TITATGRLSSTEPNLQNIPMRIELGR-------------------------LI 687

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +  EG + + AD + IE RVLA M+G++  ++A+   +D++  T ++ F++   +V
Sbjct: 688 RKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEV 747

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T  QR   K +   + Y            +  L+                          
Sbjct: 748 TDLQRRNAKAVNFGIVYG-----ISSFGLSQDLS-------------------------- 776

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                  + + + + ++    + L    ++              
Sbjct: 777 -------------ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKE-------------- 809

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          +    GR     ++ ++     +      R            +Q 
Sbjct: 810 ------------KGYVTTMFGRRRPVPELSSSNFMQRSF---GERVAMNSP------IQG 848

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSW 657
            + DI+   M+              ++LTVHDE++ ET   +E     +    M      
Sbjct: 849 TAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAADL 908

Query: 658 AKGLPLKAEGYESKRY 673
           A  + L+ + +  K +
Sbjct: 909 A--VTLEIDAHVGKNW 922


>gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna.
 gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 10 Base Pairs Of Duplex Dna
           Following Addition Of A Single Dttp Residue
 gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 11 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp And A Datp Residue.
 gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 15 Base Pairs Of Duplex Dna
           Following Addition Of Dttp, Datp, Dctp, And Dgtp
           Residues.
 gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Product Complex With 12 Base Pairs Of Duplex Dna
           Following Addition Of A Dttp, A Datp, And A Dctp
           Residue.
 gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site
 gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site
 gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site
 gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site
 gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site
 gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site
 gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site
 gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site
 gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site
 gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Two Rounds Of Primer
           Extension, Following Incorporation Of Dctp And Dgtp.
 gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Three Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, And
           Dttp.
 gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Guanine-Thymine Mismatch After Five Rounds Of Primer
           Extension, Following Incorporation Of Dctp, Dgtp, Dttp,
           And Datp.
 gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A
           Cytosine-Thymine Mismatch After A Single Round Of Primer
           Extension, Following Incorporation Of Dctp.
 gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A
           Benzo[a]pyrene Adduct That Blocks Replication
 gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As
           Yet Unnamed) Dna Polymerase Fragment
          Length = 580

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 32  HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 86  WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +  D +   T+     
Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 410 KAVNF--------------GIVYGISDYGLAQ---------------------------- 427

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 569 DYHYGSTW 576


>gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl
           polymerase 1
 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus
 gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus]
          Length = 831

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 99/610 (16%), Positives = 182/610 (29%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL     LD+        ++LA      +   + V                      
Sbjct: 354 DLAVLALREGLDLFPE--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 394

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                   +  +            +  K  +     +    E     E+ L  +   +  
Sbjct: 395 ------GEWTEDAGERALLAERLFQTLKERLKGEERLLWLYE---EVEKPLSRVLARMEA 445

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V+ E  +L++E+  L      +    ++L+  LF E GL     
Sbjct: 446 TGVRLDVAYLQALSLEVEAEVRQLEEEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 504

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L   ++   GRL    
Sbjct: 505 TEKTGKRSTSAAVLEALREAHPIVDRILQYR-ELTKLKNTYIDPLPALVHPKTGRLHTRF 563

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 564 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 597

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A EG  LVV D + IE RVLA ++G++  ++ F+ G D++  T +  F V+P  V    
Sbjct: 598 VAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVFQEGRDIHTQTASWMFGVSPEGVDPLM 657

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 658 RRAAKTINF--------------GVLYGMS------------------------------ 673

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E            + + Q + +V      +    E+    G             
Sbjct: 674 AHRLSGELSIPYEEAVAFIERYFQSYPKVRAW---IEGTLEEGRRRGYVETL-------- 722

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 723 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 758

Query: 609 ILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M     W   +PL
Sbjct: 759 LMKLAMVRLFPRLQELGARMLLQVHDELVLEAPKDRAERVAALAKEVMEGV--WPLQVPL 816

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 817 EVEVGLGEDW 826


>gi|322434369|ref|YP_004216581.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9]
 gi|321162096|gb|ADW67801.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9]
          Length = 975

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 94/654 (14%), Positives = 194/654 (29%), Gaps = 148/654 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-TLVLARSNGLPSALKAV--- 112
           L++ALE+  +    H+      VL+A     I +       ++L+           +   
Sbjct: 431 LRDALEDAALPKDLHDLK---AVLRALEPHGITLAGVRDDVMLLSYLVNPTHGSHTLPDV 487

Query: 113 -GEALK--------------LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                               L  +       +     K      L     P    A    
Sbjct: 488 VARFTNRALTPVVKGVVSPTLLPESANAIHRVAPILRKQVEEAGLVVHEIPKDDPALGGA 547

Query: 158 GEYC-----KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             +           V +     ++   + +  L  +   + + G  +D A+ + ++  + 
Sbjct: 548 VTHEMLFPPAAAPVVGKADGPLVKVYETIDLPLVPVLLRMEEAGVRIDPAVLNEMSSRLA 607

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TE--TTCQRVLSSNK 267
           VE   L +++ + +     +    ++L   LF +  L         +  +T Q VL    
Sbjct: 608 VEIDNLAEKIYADSGHR-FNINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQDVLEELA 666

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           +  P A  V  +R    +     L+ L    + +GR+  T   +G + TGR S      Q
Sbjct: 667 ENHPIAALVIEHRQ-LQKLKSTYLDQLPSLSDREGRIHTTFNQVG-TATGRLSSTNPNLQ 724

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    E                         +R+  IA+ G  L+ AD + IE R
Sbjct: 725 NIPTRTAIGRE-------------------------IRAAFIAAPGNLLMSADYSQIELR 759

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++A  + +   L A+ TG+D++  T A  F V    + K+ RA  K +   + Y      
Sbjct: 760 LMAHFSQDPLLLNAYRTGQDIHTLTAAEVFGVDAETMDKETRARAKAVNFGIVY------ 813

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A  +  +                                      
Sbjct: 814 --------GISPFGLAAQLGIDQ------------------------------KVARTYI 835

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + +  ++  +    +E  +                                 +    GR 
Sbjct: 836 ETYYDRYKGIKRFIDETLETVRLA--------------------------GAVSTHFGRV 869

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
               D+ +    +        R             Q  + D++   M++  +        
Sbjct: 870 RPIPDIQSRNPNMRGF---AERTAINTPL------QGTAADLIKLAMISLDREIRARGLK 920

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
             + L VHDE++ +   ++      L    M +   +   +P+ A+      +R
Sbjct: 921 SRMTLQVHDELLFDVVPSEAEEMQTLVQHEMENVAEF--SIPIVADIGLGDNWR 972


>gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO]
 gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO]
          Length = 868

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 86/665 (12%), Positives = 190/665 (28%), Gaps = 142/665 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++  A+G +          +D  + +       + +       +++      L      
Sbjct: 322 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 376

Query: 87  DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                      L+ A           ++ +      +  + +E              + L
Sbjct: 377 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 428

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +  +       R           +++E+ ++ +    ++ EL    +   +   G  VD
Sbjct: 429 PEEEELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISGIKVD 488

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +         +++Q++         +    ++L   LF + GL +   T+   +
Sbjct: 489 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 547

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   ++  P    +   R   ++     +  L++ + SDG++         ++TG
Sbjct: 548 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 605

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   +  E    +
Sbjct: 606 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 640

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435
             +D + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R   K +
Sbjct: 641 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 700

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 701 N--------------FGIVYGISDYGLSQ------------------------------N 716

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 A ++    + +K+  V E    + +  +                          
Sbjct: 717 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 751

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +     R     D+ +             R            +Q  + DIL   M+
Sbjct: 752 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 801

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              K          ++L VHDE+V E P+ +  +   L   +M    S    +PL  +  
Sbjct: 802 ELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSS 859

Query: 669 ESKRY 673
             K +
Sbjct: 860 WGKTW 864


>gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 939

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 85/632 (13%), Positives = 172/632 (27%), Gaps = 138/632 (21%)

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K    + D   +  ++     +L    +  I        L+ A      +   ++  +  
Sbjct: 429 KPFWASKDHRKLFFDAK-SLWLLARREDTVIEGID-GDGLLGAYLLDPLANRYSLARSA- 485

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 +   E        E                    GE           +++    
Sbjct: 486 HDWIGWKVDTEAGRSVLPPEEGARAAAALFHMTPVMEARLGE------EGLCALYR---- 535

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   +   G  V+ A+   +   +  +  +L  ++  L      +    +
Sbjct: 536 --DVELPLAPILGAMEWTGIKVNPAVLQEMAGELGADIRRLQADIYDLAG-ESFNINSTQ 592

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +    LF + GL +   T+   +T   VL       P   +V   R    +     +  L
Sbjct: 593 QFGKILFEKLGLPVIKRTKTGYSTDVEVLEELADRHPIVPKVLEYRQ-LMKLKSTYVEGL 651

Query: 295 VEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           +  ++  DGR+  +      + TGR S      QN+P                       
Sbjct: 652 LPLIDGEDGRIHTSFNQAV-TATGRLSSTEPNLQNIPVRLEQGRR--------------- 695

Query: 354 PDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R    A  +   L+ AD + IE R+LA ++G+     AF   +D++  T
Sbjct: 696 ----------IRKAFTAPGDDWTLLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHTRT 745

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +  F V    VT + R   K +   + Y            +  L +         +   
Sbjct: 746 ASEVFGVPMENVTSEMRRRAKAVNFGIVYGIS-----DFGLSRDLGVLRAEARQYIDGYF 800

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
           + +   + +   +                                               
Sbjct: 801 DRYSGVKGYIDEIIAEARRQGYVTTL---------------------------------- 826

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                    +RR +P +++K                        R+ +NT          
Sbjct: 827 -------LGRRRRLPDLFVKNKIRQNF---------------GERAAMNTP--------- 855

Query: 593 YGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDE-FNAS 645
                    +Q  + DI+   M+              ++L VHDE++ E P  +    A+
Sbjct: 856 ---------IQGTAADIIKAAMVRIPGLLAAKGLKTRMLLQVHDELIFEAPKEELSEAAA 906

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY--RK 675
           ++   M         +PL  +      +   K
Sbjct: 907 LIRETMEQTIR--LDVPLTVDVKTGPNWYEMK 936


>gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1]
          Length = 833

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 98/610 (16%), Positives = 189/610 (30%), Gaps = 151/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL     + +        L++A      +   + V         +    + L++   
Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGEFTEDAAERALLSERL 414

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                  L ++                         +++        E+ L  +   +  
Sbjct: 415 FQTLFPRLSEKL----------------------LWLYQ------EVERPLSRVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--- 251
           RG  +DV L   L+  ++ E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHP-FNLNSRDQLEKVLFDELGLTPVGR 505

Query: 252 -EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T Q  L + +   P    +   R   S+     L+ L   ++   GRL    
Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELILQYR-ELSKLKSTYLDPLPRLVHPRTGRLHTRF 564

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 598

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A EG  L+ AD + IE RVLA ++G++   + F  G+D++  T A  F + PA V    
Sbjct: 599 VAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKM 658

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++ +  +  +  +                   
Sbjct: 659 RRAAKTVNF--------------GVLYGMSAHRLSQELGID------------------- 685

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          E   + + Q   +V      + +  E+    G             
Sbjct: 686 -----------YKEAEAFIERYFQSFPKVRAW---IERTLEEGRTRGYVETL-------- 723

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+ +    + +      R            VQ  + D
Sbjct: 724 ---------------FGRRRYVPDLASR---VRSVREAAERMAFNMP------VQGTAAD 759

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663
           ++   M+         G  ++L VHDE+V E P+   E   +++  +M +   +   +PL
Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENA--YPLDVPL 817

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 818 EVEVGVGRDW 827


>gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4]
          Length = 930

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 86/676 (12%), Positives = 192/676 (28%), Gaps = 158/676 (23%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMP-QVLKEALENTDVTIVAHNSYF---ERT------ 78
             +  A    +             +P + +      ++       + +   +        
Sbjct: 378 YCLGAAISTGEEETFFI--KAGENLPAKQILSMFTASEA------ASYATLDLKPQLAAL 429

Query: 79  -VLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALK---LSSQKMEEGKELIA 131
            +L+   N +I +      ++ A            + + +      + S+    GK  I 
Sbjct: 430 GLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIE 489

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE--IFKRLEPLSSKEQELWYL- 188
           +  K          + P     +  +  Y       T E  + +        E E+  + 
Sbjct: 490 QAMK----------DAPEAFLNYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVF 539

Query: 189 -DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
               + + G              + V   +L++++         +    ++L   LF + 
Sbjct: 540 TLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAG-EEFNINSPKQLGVILFEKL 598

Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            +     T+   +T   VL       P    +   R   ++      + LV  +  DGR+
Sbjct: 599 SMPYGKKTKTGYSTAADVLDRLAPEYPIVSDILEYRQ-LTKLKSTYADGLVNYIAKDGRI 657

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             +      + TGR S      QN+P                                 +
Sbjct: 658 HTSFNQ-TITATGRLSSTEPNLQNIPMRIELGR-------------------------LI 691

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +  EG + + AD + IE RVLA M+G++  ++A+   +D++  T ++ F++   +V
Sbjct: 692 RKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEV 751

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T  QR   K +   + Y            +  L+                          
Sbjct: 752 TDLQRRNAKAVNFGIVYG-----ISSFGLSQDLS-------------------------- 780

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                  + + + + ++    + L    ++              
Sbjct: 781 -------------ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKE-------------- 813

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          +    GR     ++ ++     +      R            +Q 
Sbjct: 814 ------------KGYVTTMFGRRRPVPELSSSNFMQRSF---GERVAMNSP------IQG 852

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSW 657
            + DI+   M+              ++LTVHDE++ ET   +E     +    M      
Sbjct: 853 TAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAADL 912

Query: 658 AKGLPLKAEGYESKRY 673
           A  + L+ + +  K +
Sbjct: 913 A--VTLEIDAHVGKNW 926


>gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair
           Position
 gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position
 gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair
           Position
 gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site
           (- 1 Basepair Position)
 gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position
 gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion
           Site
 gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion
           Site (-1 Basepair Position)
          Length = 580

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 32  HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 86  WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +  D +   T+     
Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 410 KAVNF--------------GIVYGISDYGLAQ---------------------------- 427

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 569 DYHYGSTW 576


>gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
 gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929]
          Length = 884

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 108/666 (16%), Positives = 198/666 (29%), Gaps = 149/666 (22%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERTVLKACFNL--- 86
           L  F             +DP +   Q + + L +  +     N  F+    +    L   
Sbjct: 340 LVGFAIGQGNKWYV--TNDPELLHNQHVSDLLTSKTIKK---NL-FDAK--RTYVGLYRQ 391

Query: 87  DIPIHRW-ICTLVLARSNGLPSALKAVGEA------LKLSSQKMEEGKELIARFC--KGE 137
            I +       L+++      +    VG          + + +   GK            
Sbjct: 392 GIELANVDFDMLLVSYLLNTTNNSNDVGTVAHLHGFYNVKTDEEVYGKGAKRHIDPQSPA 451

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               L  + K        +F +    D     +++         E ++ ++   +   G 
Sbjct: 452 FLAHLVHKVKAIDALHDGMFKD---LDAHNQSKLYW------DIEIKIAFVLAHMEINGI 502

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE- 256
            VD A    +         +++Q +         +    ++L   LF +  L +   T+ 
Sbjct: 503 KVDAATLEGMGSKFKERLAEIEQTIFQEAG-EEFNIGSPKQLGKILFEKLRLPILKKTKT 561

Query: 257 --TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
             +T   VL       P    V + R   S+     ++ L++ ++ D     T      +
Sbjct: 562 GYSTSVDVLEKLAPDAPIVQNVLDYRQ-ISKLQSTYVDGLLKVIHPDDSKVHTRYLQTLT 620

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EG 373
           +TGR S      QN+P  S                              +R   I S  G
Sbjct: 621 QTGRLSSVDPNLQNIPVRSEEGR-------------------------LIRQAFIPSHPG 655

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIG 432
            ++  +D + IE RVLA +  +Q    AF+ GED++ TT  R F +    +VT + R   
Sbjct: 656 WQIFSSDYSQIELRVLASITDDQNMQDAFKNGEDIHATTARRIFGLPSNEEVTPELRRQA 715

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y             +   +             EE+   + +   + E    H
Sbjct: 716 KAVNFGIVYGIS-----DFGLASNTGITRKQAHQFIERYFEEYPGVKKYTEDIVEFARNH 770

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
              +                                           A +RR +P +  K
Sbjct: 771 RYVETI-----------------------------------------AHRRRYLPDINSK 789

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                                   R+ +NT                   +Q  + DI+  
Sbjct: 790 SFNLRSF---------------AERTAMNT------------------PIQGSAADIIKI 816

Query: 613 GMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
            M+N   A       ++L VHDE++ E PD +      L   +M S       +PLK E 
Sbjct: 817 AMINMADAIKDMKTRMLLQVHDELIFEVPDEELDTVKQLIPSVMDSAIH--LNVPLKVES 874

Query: 668 YESKRY 673
           +  K +
Sbjct: 875 HWGKTW 880


>gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82]
 gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82]
          Length = 930

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 86/675 (12%), Positives = 192/675 (28%), Gaps = 158/675 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMP-QVLKEALENTDVTIVAHNSYF---ERT------- 78
            +  A    +             +P + +      ++       + +   +         
Sbjct: 379 CLGAAISTGEEETFFI--KAGENLPAKQILSMFTASEA------ASYATLDLKPQLAALG 430

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALK---LSSQKMEEGKELIAR 132
           +L+   N +I +      ++ A            + + +      + S+    GK  I +
Sbjct: 431 LLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIEQ 490

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE--IFKRLEPLSSKEQELWYL-- 188
             K          + P     +  +  Y       T E  + +        E E+  +  
Sbjct: 491 AMK----------DAPEAFLNYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFT 540

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              + + G              + V   +L++++         +    ++L   LF +  
Sbjct: 541 LADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAG-EEFNINSPKQLGVILFEKLS 599

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           +     T+   +T   VL       P    +   R   ++      + LV  +  DGR+ 
Sbjct: 600 MPYGKKTKTGYSTAADVLDRLAPEYPIVSDILEYRQ-LTKLKSTYADGLVNYIAKDGRIH 658

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            +      + TGR S      QN+P                                 +R
Sbjct: 659 TSFNQ-TITATGRLSSTEPNLQNIPMRIELGR-------------------------LIR 692

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              +  EG + + AD + IE RVLA M+G++  ++A+   +D++  T ++ F++   +VT
Sbjct: 693 KAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVT 752

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
             QR   K +   + Y            +  L+                           
Sbjct: 753 DLQRRNAKAVNFGIVYG-----ISSFGLSQDLS--------------------------- 780

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                                 + + + + ++    + L    ++               
Sbjct: 781 ------------ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKE--------------- 813

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                         +    GR     ++ ++     +      R            +Q  
Sbjct: 814 -----------KGYVTTMFGRRRPVPELSSSNFMQRSF---GERVAMNSP------IQGT 853

Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWA 658
           + DI+   M+              ++LTVHDE++ ET   +E     +    M      A
Sbjct: 854 AADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAADLA 913

Query: 659 KGLPLKAEGYESKRY 673
             + L+ + +  K +
Sbjct: 914 --VTLEIDAHVGKNW 926


>gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118]
          Length = 886

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 98/676 (14%), Positives = 207/676 (30%), Gaps = 140/676 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73
           L   G   +      + F+   +D          D  + +   +K  LE+  +     N 
Sbjct: 329 LEMLGANYHLAPF--VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 379

Query: 74  YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            F+     V      +      +   L+ +      +    +GE   L        K  +
Sbjct: 380 -FDLKRTMVAAHRLGIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 435

Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
             + KG++     D ++  +  A +    E  K ++    +  ++     + E     + 
Sbjct: 436 EVYGKGKSEHIPDDDDELFNHLASKVNAIEKLKRELLKKLKEHEQDALFDTIEIPTACVL 495

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V+ +    L     V+  +L+ ++         +    ++L   LF + GL
Sbjct: 496 ARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAG-EKFNLNSPKQLGHILFEKLGL 554

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL   K  +P   ++ + R   ++     +  L++ +  DGR+  
Sbjct: 555 PVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 613

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P  +   +                          +R 
Sbjct: 614 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 647

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             +       +   D + +E RVLA ++G+Q   +AF+TG D++  T  + F++  P QV
Sbjct: 648 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQV 707

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R   K +                    G++    +                     
Sbjct: 708 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 733

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++ ++ +      +A ++  + G A       
Sbjct: 734 ----------NLGISRKRAQEFIDNYFEQYPQIKDYM---DKAVQEARDKGYAETIMH-- 778

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R     D+   +    T      R            +Q 
Sbjct: 779 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 808

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M S    
Sbjct: 809 SAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 867

Query: 658 AKGLPLKAEGYESKRY 673
              +PL A+      +
Sbjct: 868 -LDVPLIADSGWGHNW 882


>gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2]
          Length = 833

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 100/610 (16%), Positives = 189/610 (30%), Gaps = 151/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL     + +        L++A      +   + V         +    + L++   
Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGEFTEDAAERALLSE-- 412

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                               RLF             +++        E+ L  +   +  
Sbjct: 413 --------------------RLFQNLFPRLSEKLLWLYQ------EVERPLSRVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--- 251
           RG  +DV L   L+  ++ E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHP-FNLNSRDQLERVLFDELGLTPVGR 505

Query: 252 -EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T Q  L + +   P    +   R   S+     L+ L   ++   GRL    
Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELILQYR-ELSKLKSTYLDPLPRLVHPRTGRLHTRF 564

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 598

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A EG  L+ AD + IE RVLA ++G++   + F  G+D++  T A  F + PA V    
Sbjct: 599 VAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKM 658

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++ +  +  +  +                   
Sbjct: 659 RRAAKTVNF--------------GVLYGMSAHRLSQELGID------------------- 685

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          E   + + Q   +V      + +  E+    G             
Sbjct: 686 -----------YKEAEAFIERYFQSFPKVRAW---IERTLEEGRTRGYVETL-------- 723

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+ +    + +      R            VQ  + D
Sbjct: 724 ---------------FGRRRYVPDLASR---VRSVREAAERMAFNMP------VQGTAAD 759

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663
           ++   M+         G  ++L VHDE+V E P+   E   +++  +M +   +   +PL
Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENA--YPLDVPL 817

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 818 EVEVGVGRDW 827


>gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8]
 gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth
           polymerase 1
 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8]
          Length = 834

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 96/610 (15%), Positives = 183/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL +   LD+        ++LA      +   + V         +    + L++   
Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAHRALLSERL 414

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                     RN     E                  ++  +E   S       +   +  
Sbjct: 415 H---------RNLLKRLEGEEKL-----------LWLYHEVEKPLS------RVLAHMEA 448

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253
            G  +DVA    L+  +  E  +L++E+  L      +    ++L+  LF E  L  L  
Sbjct: 449 TGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHP-FNLNSRDQLERVLFDELRLPALGK 507

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
             +    +T   VL + ++  P   ++  +R   ++     ++ L   ++   GRL    
Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELTKLKNTYVDPLPSLVHPRTGRLHTRF 566

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 567 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 600

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A  G  LV  D + IE RVLA ++G++  ++ F+ G+D++  T +  F V P  V    
Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 661 RRAAKTVNF--------------GVLYGMS------------------------------ 676

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E            + + Q   +V      + +  E+  + G             
Sbjct: 677 AHRLSQELAIPYEEAVAFIERYFQSFPKVRAW---IEKTLEEGRKRGYVETL-------- 725

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 726 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 761

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE++ E P       + L    M      A  +PL
Sbjct: 762 LMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPL 819

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 820 EVEVGMGEDW 829


>gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna (Open Form)
          Length = 580

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 32  HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 86  WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +  D +   T+     
Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 410 KAVNY--------------GIVYGISDYGLAQ---------------------------- 427

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 569 DYHYGSTW 576


>gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2]
          Length = 833

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 98/610 (16%), Positives = 190/610 (31%), Gaps = 151/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL     + +        L++A      +   + V         +    + L++   
Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTHPEGVARRYGGEFTEDAAERALLSERL 414

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                  L ++                         +++        E+ L  +   +  
Sbjct: 415 FQTLFPRLSEKL----------------------LWLYQ------EVERPLSRVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--- 251
           RG  +DV L   L+  ++ E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHP-FNLNSRDQLERVLFDELGLTPVGR 505

Query: 252 -EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T Q  L + +   P    +   R   S+     L+ L   ++   GRL    
Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELILQYR-ELSKLKSTYLDPLPRLVHPRTGRLHTRF 564

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 598

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A EG  L+ AD + IE RVLA ++G++   + F  G+D++  T A  F + PA V +  
Sbjct: 599 VAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDQKM 658

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++ +  +  +  +                   
Sbjct: 659 RRAAKTVN--------------FGVLYGMSAHRLSQELGID------------------- 685

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          E   + + Q   +V      + +  E+    G             
Sbjct: 686 -----------YKEAEAFIERYFQSFPKVRAW---IERTLEEGRTRGYVETL-------- 723

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+ +    + +      R            VQ  + D
Sbjct: 724 ---------------FGRRRYVPDLASR---VRSVREAAERMAFNMP------VQGTAAD 759

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663
           ++   M+         G  ++L VHDE+V E P+   E   +++  +M +   +   +PL
Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENA--YPLDVPL 817

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 818 EVEVGVGRDW 827


>gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis]
          Length = 833

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/610 (16%), Positives = 189/610 (30%), Gaps = 151/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL     + +        L++A      +   + V         +    + L++   
Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGEFTEDAAERALLSE-- 412

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                               RLF             +++        E+ L  +   +  
Sbjct: 413 --------------------RLFQNLFPRLSEKLLWLYQ------EVERPLSRVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--- 251
           RG  +DV L   L+  ++ E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 447 RGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHP-FNLNSRDQLERVLFDELGLTPVGR 505

Query: 252 -EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T Q  L + +   P    +   R   S+     L+ L   ++   GRL    
Sbjct: 506 TEKTGKRSTAQGALEALRGAHPIVELILQYR-ELSKLKSTYLDPLPRLVHPRTGRLHTRF 564

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 565 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRKAF 598

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A EG  L+ AD + IE RVLA ++G++   + F  G+D++  T A  F + PA V    
Sbjct: 599 VAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKM 658

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++ +  +  +  +                   
Sbjct: 659 RRAAKTVNF--------------GVLYGMSAHRLSQELGID------------------- 685

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          E   + + Q   +V      + +  E+    G             
Sbjct: 686 -----------YKEAEAFIERYFQSFPKVRAW---IERTLEEGRTRGYVETL-------- 723

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+ +    + +      R            VQ  + D
Sbjct: 724 ---------------FGRRRYVPDLASR---VRSVREAAERMAFNMP------VQGTAAD 759

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663
           ++   M+         G  ++L VHDE+V E P+   E   +++  +M +   +   +PL
Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENT--YPLDVPL 817

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 818 EVEVGVGRDW 827


>gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC
           polymerase 1
 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus]
          Length = 834

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/610 (15%), Positives = 184/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL +   LD+        ++LA      +   + V         +    + L++   
Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAHRALLSERL 414

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                     RN     +                  ++  +E   S       +   +  
Sbjct: 415 H---------RNLLKRLQGEEKL-----------LWLYHEVEKPLS------RVLAHMEA 448

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253
            G  +DVA    L+  +  E  +L++E+  L      +    ++L+  LF E  L  L  
Sbjct: 449 TGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHP-FNLNSRDQLERVLFDELRLPALGK 507

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
             +    +T   VL + ++  P   ++  +R   ++     ++ L   ++ + GRL    
Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELTKLKNTYVDPLPSLVHPNTGRLHTRF 566

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 567 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 600

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A  G  LV  D + IE RVLA ++G++  ++ F+ G+D++  T +  F V P  V    
Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 661 RRAAKTVNF--------------GVLYGMS------------------------------ 676

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E            + + Q   +V      + +  E+  + G             
Sbjct: 677 AHRLSQELAIPYEEAVAFIERYFQSFPKVRAW---IEKTLEEGRKRGYVETL-------- 725

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 726 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 761

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE++ E P       + L    M      A  +PL
Sbjct: 762 LMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQAGAEEVAALAKEAMEKAYPLA--VPL 819

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 820 EVEVGMGEDW 829


>gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
 gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3]
          Length = 885

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 92/665 (13%), Positives = 192/665 (28%), Gaps = 149/665 (22%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            F   D    L     D  + +   LK+ LE+  V     N+  +   L     +D+   
Sbjct: 341 GFVIGDGTTWLV--SRDAELLKQAPLKKLLESPAVAKNVFNAKAQIVGLHR-LGIDLRNV 397

Query: 92  RWICTLVLARSNGLPSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                L+ +           +G+ AL+                   E       +     
Sbjct: 398 D-FDLLLASYLLNTNDNSNDLGQVALEHDYH----------EVATDEEVYGKGAKRAI-- 444

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200
            +  + F  +         ++   L       Q           L  +   +   G  V+
Sbjct: 445 PDDDQTFYTHLAQKARAINDLRDPLFKKLDDNQQTPLYTEIEVPLTRVLAAMEITGIKVN 504

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +   +      ++ ++ +       +    ++L   LF +  L +   T+   +
Sbjct: 505 SQTLKDMGSKLTERLADIEDQIYAAAG-EEFNINSTKQLGHILFEKLKLPVIKKTKTGYS 563

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL       P    +   R   ++     +  L++ ++S  +   T      ++TG
Sbjct: 564 TAVDVLEKLADQAPIVEDILQYRQ-IAKLQSTYITGLLKVIHSSDQKIHTRYLQTLTQTG 622

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376
           R S      QN+P                                 +R   + S EG ++
Sbjct: 623 RLSSVDPNLQNIPVRLPEGR-------------------------LIRKAFVPSHEGWQI 657

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVM 435
             +D + +E RVLA + G++   + F+ GED++ +T  R F++    ++ ++ R   K +
Sbjct: 658 FSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAV 717

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y               ++++         +  +E+   + +         EH   
Sbjct: 718 NFGIVYGIS-----DYGLAQRIHVSRSQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYV 772

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           +                                             +RR +P ++ K   
Sbjct: 773 ETIT-----------------------------------------HRRRYLPDIHAKSFS 791

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                                R+ +NT                   +Q  + DI+   M+
Sbjct: 792 RRSF---------------AERTAMNT------------------PIQGSAADIIKIAMI 818

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              +          ++L +HDE+V E P  +      L   +M S       +PLK E  
Sbjct: 819 RMKEEIKQRQLQARMLLQIHDELVFEAPAEEIPVLQKLVPQVMDSAVQ--LNVPLKVESK 876

Query: 669 ESKRY 673
               +
Sbjct: 877 VGDTW 881


>gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
 gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588]
          Length = 939

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/696 (13%), Positives = 194/696 (27%), Gaps = 152/696 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVLK 58
            +  D ET         G    A D  ++  +F              D      +     
Sbjct: 367 EISFDTETT--------GTDANAVD--LVGMSFSIKAGEGWYIPVPADKAQAQAIVDSFL 416

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEAL 116
                T +T++  N  ++  V+K    ++        T++            +  +    
Sbjct: 417 PLFNTTHITLIGQNIKYDMIVMKWY-GVEFN-GPVFDTMLAHYLIEPEGRRGMDLLSAQY 474

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +    + LI +                          EY   D  +T ++ ++  
Sbjct: 475 --LQYEPVSIETLIGK---------KGKGQGNMRDVEIDKIKEYAVEDADITLQLKEKFA 523

Query: 177 PLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           PL             E  L  +   +   G  +D+      ++ ++ E  + ++ + +  
Sbjct: 524 PLLPLKAVDKVFYDVENPLVRVLTDMEYEGIALDIQALSDYSRELETEIKRAEESVYTQA 583

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLE-DLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
                +    ++L   LF +  L  +   T+T    T + VL+           +   R 
Sbjct: 584 GVR-FNLASPKQLGEVLFEKLLLDPKAKKTKTGQYATGEDVLAKLANKHQIVEDILVFR- 641

Query: 282 RASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             S+     ++ L   +N    R+  +     A  TGR S      QN+P  +    E  
Sbjct: 642 ELSKLKSTYVDALPLMLNKRTNRVHTSYNQAVA-VTGRLSSNNPNLQNIPIRTDRGRE-- 698

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  VR   +A  E   L+ AD + IE R++A ++G+   +
Sbjct: 699 -----------------------VRKAFVAKNEDYVLMSADYSQIELRIIAAISGDVHMI 735

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF  G D++  T A+ + V  A VT D R   K +   + Y   A        +  L +
Sbjct: 736 DAFRQGLDIHAATAAKVYGVELADVTADMRRNAKSVNFGIIYGVSA-----FGLSENLGI 790

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    ++   ++   + +     ++  ++   +  +G   +R  K     ++ V  
Sbjct: 791 ARGEAKTLIDNYFAQYPSIKKYMDDQIKSAQQNGYVETLLGR--KRWLKDINSSNAVVRG 848

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 +        G A                              L    +      
Sbjct: 849 Y---AERNAINMPIQGTAADMI-------------------------KLAMISIHKTLKK 880

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVCETPD 638
            N  +R                            M+         +V  VH         
Sbjct: 881 ENLRSR----------------------------MILQVHDE---LVFDVH--------K 901

Query: 639 TDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +      ++   M +    A  +P+  E      +
Sbjct: 902 DEIEQIKPLIQDGMRNALPLA--VPVDVEIGIGVNW 935


>gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63]
          Length = 854

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 103/689 (14%), Positives = 207/689 (30%), Gaps = 175/689 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+++FET               E+  +  FA  FD           D  +     + +
Sbjct: 319 KKLYLNFET---------------ENKELKSFAVLFDGK----VYISTDEEL---FVKFI 356

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSS 120
            ++++     N     T+       +I +        + A      S             
Sbjct: 357 ADSELEKYTRNIK---TLYAYADEKNIDVENIVFDIELAAYLIEPSS------------- 400

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K    K L A +                  E +  F  Y      +  ++  +++    
Sbjct: 401 -KDYSDKNLCASYEIALPVC------TDEQNEKYEAFACYA----ELCEKLGDKIKAHGQ 449

Query: 181 KEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           ++        L  +   + + G CVD     +  +++  +  +L+  +         +  
Sbjct: 450 EKLLSEIEIPLAKVLARMENIGVCVDRQGIESYGEMLSAQIKELETAIYESAGC-EFNIN 508

Query: 235 CLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF   GL  +  T++   T   VL S +   P    V   R   S+      
Sbjct: 509 SPKQLGVVLFENLGLPCKKKTKSGYSTNAEVLESLRYEHPVVEMVLRYR-TLSKLNSTYC 567

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++ +  DGR+         +RTGR S      QN+P  +    E             
Sbjct: 568 EGLLKVIADDGRIHSNFNQ-TETRTGRISSTEPNLQNIPVRTELGRE------------- 613

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R    A +G  LV AD + IE RVLA ++G++  +KAF+  ED++  
Sbjct: 614 ------------MRKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNEDIHAI 661

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T ++ FN+    VT   R+  K +   +                                
Sbjct: 662 TASQVFNMPLDMVTPIMRSRAKAVNFGIV------------------------------- 690

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                A +        +   +++   +S V      + +     
Sbjct: 691 -------------YGIGAFSLAKDIGVSNKEAKHYIESYLAHYSGVDSYMKNVVEKA--- 734

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                    +  +    GR     ++ +++  +     ++ R  
Sbjct: 735 -----------------------NADGYVETMFGRRRNLPELTSSKHMIRAFGERVAR-- 769

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+   M+   +          +VL VHDE++ E P  +    +
Sbjct: 770 -------NMPIQGTAADIIKIAMIKVDERMKAENLRARLVLQVHDELIVEAPQDESMRVA 822

Query: 646 MLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           ++    M +       +PL A+    + +
Sbjct: 823 LIVQEEMENAVK--MSVPLTADAAIGRTW 849


>gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
 gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM
           15053]
          Length = 871

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/677 (13%), Positives = 192/677 (28%), Gaps = 159/677 (23%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PVMPQVLKEALENTDVTIVAHNS 73
           TK  +  +A    +      +    +       D     + + LKE    +        S
Sbjct: 330 TKNTLPLFAGQADIGGIGLCYGADKIFCIRADGDITAEYLLRELKEV---SGSVQTF--S 384

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVG-EALKLSSQKMEEGKEL 129
            F+       F +           + A            + V  E L L  +        
Sbjct: 385 MFDIKESMQYFTVA-EPSACFDVTIAAYLLNPLKNDYTYEDVAREQLGLLLE-------- 435

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFKRLEPLSSKEQELWYL 188
                         D+ + + +  +  +  Y    V   R+ + +        + E+  +
Sbjct: 436 --------------DKVEDHVKVCYEAYTAYAS--VEPLRQKLKETQMEHLFTDIEMPLV 479

Query: 189 --DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
                +   G  ++        + + ++  +L++E+         +    ++L   LF +
Sbjct: 480 FTLYDMEQNGVRIEAEALKFYGEQLGIKIEELEKEIYEAAG-EEFNINSPKQLGVILFDK 538

Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
            GL     T+   +T   VL       P   Q+   R   ++      + L   ++ DGR
Sbjct: 539 MGLKGGKKTKTGYSTAADVLDKLAPDYPVVAQILEYRQ-LTKLKSTYADGLSNYISGDGR 597

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           + G       + TGR S      QN+P                                 
Sbjct: 598 IHGKFNQ-TITATGRISSTEPNLQNIPVRMELGR-------------------------L 631

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   I  +G   + AD + IE RVLA  +G++  + A++  +D++  T ++ F+V   +
Sbjct: 632 IRKVFIPEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHRITASQVFHVPFGE 691

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT  QR   K +   + Y            +  L+                         
Sbjct: 692 VTDLQRRNAKAVNFGIVYG-----ISSFGLSQDLS------------------------- 721

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                +    + + +  +    ++     ++             
Sbjct: 722 --------------ITRKEAAKYIDDYFKTYPGIKLFLDDTVAHAKE------------- 754

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                           ++   GR     ++ ++     +      R            +Q
Sbjct: 755 -------------MGYVVTLFGRRRPVPELSSSNFMQRSF---GERVAMNSP------IQ 792

Query: 604 AVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPS 656
             + DI+   M+   +          +VL VHDE++ E    +      +    M    S
Sbjct: 793 GTAADIIKIAMIGVNRRLKEKHMRSRLVLQVHDELLIEAYGPELEEVKAILKDEMEHAAS 852

Query: 657 WAKGLPLKAEGYESKRY 673
               +PL+ + +    +
Sbjct: 853 --LEVPLEIDMHTGDNW 867


>gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
 gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811]
          Length = 893

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 90/633 (14%), Positives = 187/633 (29%), Gaps = 130/633 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAV 112
            LK  +EN  +     N   +  +LK    + +   +    L+++           L  +
Sbjct: 372 ELKSVIENAGIIKNVFNIKAQLILLKR-LGIKLKGTK-FDFLLVSYLLDTTDNDNELATL 429

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            +   L     E+     A+F   E    +            +   E    D     +  
Sbjct: 430 AQRFDLYMTSDEDIYGKGAKFAIPEDDARVLAHLANKADILMQ--VEQSAFDA---LQEH 484

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++    +  E  L  +   +  +G  +D      +   ++     ++  +  +  G   +
Sbjct: 485 EQTHLYTEIELPLAQVLADMEYQGIKIDQKRLRDIGSDLEGRIHAIEDAIY-IEAGEKFN 543

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF + GL +   T+   +T   VL       P    +   R   ++    
Sbjct: 544 INSPKQLGVLLFEKMGLPVVKRTKTGYSTAVDVLEKLAAQAPIVDHILQYRQ-LAKLKST 602

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L+  ++       T      ++TGR S      QN+P  +                
Sbjct: 603 YVEGLLTVVHDQDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRTEEGR------------ 650

Query: 350 ITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +R+  +      ++V AD + IE RVLA M G++   +AF  GED+
Sbjct: 651 -------------QIRTAFVPSEPNWQIVGADYSQIELRVLAHMTGDKNMQRAFLNGEDI 697

Query: 409 YVTTYARSFNVAPAQVTKD-QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +  T    F +          R   K +   + Y               L ++       
Sbjct: 698 HAETARAVFGLKDDAPVDALMRRTAKAVNFGIVYGIS-----DFGLANNLGISRGEAKSF 752

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            ++  +E+     +   ++E   E    +                               
Sbjct: 753 IDTYFKEFPQIHAWMAKIKEIAHEQGFVETI----------------------------- 783

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                       A++RR +P +  K                        R+ +N+     
Sbjct: 784 ------------AKRRRYLPEIGSKNFNLRSF---------------AERTAMNSP---- 812

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDE 641
                         +Q  + DI+   M+              ++L VHDE++ E P  + 
Sbjct: 813 --------------IQGSAADIIKIAMIKVADALQEHHMQARMLLQVHDELIFEAPIDEI 858

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              + L  ++M S       +P++ E +    +
Sbjct: 859 QELTELVTNVMDSAV--VLDVPMRVESHYGNTW 889


>gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
 gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 880

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/629 (14%), Positives = 174/629 (27%), Gaps = 148/629 (23%)

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALKAVGEALKL 118
           ++D     H +     +L       I +      T + A          AL  V +    
Sbjct: 377 SSDAPKYLHEAKAAWHMLA---GRGIELRGIAHDTALAAYLLRPGQRTYALTDVSQRHL- 432

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA--WRLFGEYCKGDVTVTREIFKRLE 176
                             +              E       G   +    +T ++ +   
Sbjct: 433 ------------------QKSLGAATEQLSILDENPLVDQAGAIMELAAELTAQLQEIDS 474

Query: 177 PLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                + EL    +   +   G  VD  +  T       +  + ++    L      +  
Sbjct: 475 FELYTDLELPLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLN 534

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLK 290
             ++L+  LF    +     T+   +T  + +       P              +     
Sbjct: 535 SPKQLQAVLFDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTT- 593

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++ +  DGR+  T      + TGR S      QN+P  + +               
Sbjct: 594 LEGLIKTIQPDGRIHTTFNQ-TVTSTGRLSSTEPNLQNIPVRTEAGR------------- 639

Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG   L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 640 ------------QIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLH 687

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
               ++ F+V   +VT + R   K M   L                GL+    +      
Sbjct: 688 NYVGSKVFDVPVDEVTPELRRRVKAMSYGLV--------------YGLSAFGLSQQ---- 729

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                             + + +++ ++   V      L +   
Sbjct: 730 --------------------------LGIPAREAKEIMESYFERFGGVKRY---LDEVVV 760

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           Q  ++G                             GR     ++ ++            R
Sbjct: 761 QARKDGYTSTV-----------------------FGRRRYLPELNSDN---RVARENAER 794

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNAS 645
                       +Q  + DI+   M+   KA       ++L VHDE+V E    +  +  
Sbjct: 795 AALNAP------IQGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQ 848

Query: 646 MLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
            +    M         +PL+      K +
Sbjct: 849 RILEREMDKAIE--LTVPLEVSVGVGKNW 875


>gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
 gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus
           Dna Polymerase I Fragment Bound To Dna And Dctp
          Length = 580

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 86/661 (13%), Positives = 177/661 (26%), Gaps = 141/661 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNLDIP 89
                 +     +      +        L +         S F+     V      +++ 
Sbjct: 37  VGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALKWKGIELC 92

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
              +   L+ A        +  V  A      KM++ + +               R  P+
Sbjct: 93  GVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA---KRAVPD 143

Query: 150 HREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVAL 203
                            + R    E+ +  +       EQ L  +   +   G  VD   
Sbjct: 144 EPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKR 203

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
              + + +  +   ++Q +  L      +    ++L   LF +  L +   T+   +T  
Sbjct: 204 LEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSA 262

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL            + + R    +     +  L++ +  D +   T+     ++TGR S
Sbjct: 263 DVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLS 321

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVA 379
                 QN+P       +                         +R   + SE    +  A
Sbjct: 322 STEPNLQNIPIRLEEGRK-------------------------IRQAFVPSESDWLIFAA 356

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +    
Sbjct: 357 DYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNF-- 414

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++    A                                    
Sbjct: 415 ------------GIVYGISDYGLAQ------------------------------NLNIS 432

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                   + + +    V           ++  + G                        
Sbjct: 433 RKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH----------------- 472

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-- 617
                 R     D+ +             R            +Q  + DI+ + M++   
Sbjct: 473 ------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKKAMIDLNA 517

Query: 618 ----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
                +    ++L VHDE++ E P  +      L   +M    +    +PLK + +    
Sbjct: 518 RLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKVDYHYGST 575

Query: 673 Y 673
           +
Sbjct: 576 W 576


>gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair
           In Complex With Fragment Dna Polymerase I From Bacillus
           Stearothermophilus
          Length = 580

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 87/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 32  HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 86  WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   ++
Sbjct: 197 VKVDTKRLEQMGEELAEQLRTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKSK 255

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +  D +   T+     
Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 410 KAVNF--------------GIVYGISDYGLAQ---------------------------- 427

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 511 AMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 569 DYHYGSTW 576


>gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
          Length = 832

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 104/610 (17%), Positives = 186/610 (30%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            GE  E   +R   + R    L+G          R ++         E+ L  +   +  
Sbjct: 396 -GEWTEEAGERAALSERLFANLWGRLEGE----ERLLWLYR----EVERPLSAVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 447 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 505

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
            E   + +T   VL + ++  P   ++   R   ++     ++ L + ++   GRL    
Sbjct: 506 TEKTGKRSTSAAVLEALREAHPIVEKILQYR-ELTKLKSTYIDPLPDLIHPRTGRLHTRF 564

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR   C    QN+P  +                          +   +R   
Sbjct: 565 NQ-TATATGRLCCCDPNLQNIPVRTP-------------------------LGQRIRRGF 598

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA EG  LV  D + IE RVLA ++G++  ++ F+ G D++  T +  F V    V    
Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 659 RRAAKTINF--------------GVLYGMS------------------------------ 674

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +   + + Q   +V      + +  E+    G             
Sbjct: 675 AHRLSQELAIPYEEAQAFIERYFQSFPKVRAW---IEKTLEEGRRRGYVETL-------- 723

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 724 ---------------FGRRRYVPDLEAR---VKSVREAAERMAFNMP------VQGTAAD 759

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE+V E P       + L   +M      A  +PL
Sbjct: 760 LMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLA--VPL 817

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 818 EVEVGIGEDW 827


>gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
 gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B]
          Length = 871

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 96/652 (14%), Positives = 191/652 (29%), Gaps = 146/652 (22%)

Query: 38  DDHPVELWD-----CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           ++    + D       +      +L+  +E+  V  V H+S    T L    ++DI    
Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKY-DIDIQGFD 404

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T + A       A   V + +    +K       I   C      C     K   + 
Sbjct: 405 -FDTAIAAYLIDSSKANYEVFDLINRFLEKD------IKSDCDDLKAICSSYLTKLYEKL 457

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             RL       D+    E++ ++E        L Y+  ++   G+ ++      L     
Sbjct: 458 KERLHK----EDMD---ELYYKVE------HPLIYVLSSMESIGFKINKDKLEELRIKFK 504

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269
            +  K ++E+  L      +    ++L   LF +  L +   T+   +T Q VL      
Sbjct: 505 EQIEKTEKEIYEL-ADEEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLIDK 563

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P   +V   R   ++     +  L   ++ DG +         + TGR S      QN+
Sbjct: 564 HPIITKVMYYRQ-ITKINSTYVEGLKNVIDIDGCIHSNFNQTVTT-TGRLSSTEPNLQNI 621

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARV 388
           P      +E                         +R   I  +    L+  D + IE RV
Sbjct: 622 PIKYEMGKE-------------------------IRKVFIPQDSDDILISCDYSQIELRV 656

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA +A ++  + AFE   D++  T +  F V   +VT   R+  K +   + Y     + 
Sbjct: 657 LAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDFSL 716

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                                                       A +             
Sbjct: 717 --------------------------------------------AQDLKITKKEAAEYMA 732

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            + +++ ++ E  N + +  ++                             ++    R  
Sbjct: 733 IYFERYPKIKEYLNYVSEYAKE--------------------------KGYVLTILNRRR 766

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GY 622
              ++ ++   +        R            +Q  + DI+   M+N            
Sbjct: 767 FIPEIKSSNKIVKAL---GERLAMNAP------IQGSAADIIKLAMVNVYNKLREKNLNS 817

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +++L VHDE++      +      L    M         + L  +      +
Sbjct: 818 ELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIK--LNVALDVDLKYGYTW 867


>gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
 gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067]
          Length = 878

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 88/662 (13%), Positives = 180/662 (27%), Gaps = 166/662 (25%)

Query: 21  ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80
              Y     ++       D+ + L D              L +     +      +   L
Sbjct: 356 PELYFSSAEILA------DNKIYLLDAQSG--CWDKFDSWLSDAGSKKIT----IDSKEL 403

Query: 81  KAC-FNLDIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCK 135
             C     + +        +         +   L+ +     L        + L+    K
Sbjct: 404 YKCCLCRKVKVQGIVDDVALAGYVADPGHSSYSLEDLSRR-NLPGVLATPCENLLQLASK 462

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
             +      +                        +++         E  L  +   +   
Sbjct: 463 LRSLLAEQQQ-----------------------LKLY------EEFELPLAPVLAQMEFA 493

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G   D  L   LN+ +     KL+   +        + +  ++L   LF    L +   T
Sbjct: 494 GITPDKELLLQLNEDMGHRIAKLEALAQEQAG-EEFNLKSPKQLGVILFERLQLPVIKKT 552

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T  +VL + +   P    +  +R + ++     L  L   +N       T     
Sbjct: 553 KTGYSTDAKVLEALEGKHPLIATILEHR-KLAKLQSTYLEGLQPLINPKTGRIHTHFQQT 611

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  +                           S  +R   +   
Sbjct: 612 VTVTGRLSSTDPNLQNIPARTEE-------------------------SRQIRRIFVPGA 646

Query: 373 GK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           G   L+  D + +E R+LA +A ++  L+AF  G+D++  T A  F V   +VT   R+ 
Sbjct: 647 GYDLLMSCDYSQVELRILACIAQDELLLEAFRHGQDIHARTAAEVFGVPLDEVTPQMRSR 706

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y               L+                                 
Sbjct: 707 AKAVNFGIVYGIS-----DFGLAKQLD--------------------------------- 728

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                            ++ ++++ V +   ++     +                     
Sbjct: 729 ------VGRKEAAGYIASYFERYTGVKKYMEDIVAEARE--------------------- 761

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +    GR     ++ ++            R            +Q  + DI+ 
Sbjct: 762 -----QGYVSTLMGRRRYLPEIRSSNF---NLRSFAERTAINTP------IQGTAADIMK 807

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
           + M+   +          I+L VHDE+V E  + ++   + L    M    S    +PL 
Sbjct: 808 KAMIAVQRELDKAQCKSRILLQVHDELVLEVTEDEKEQVAQLVRTAMEGAAS--LDIPLL 865

Query: 665 AE 666
           A+
Sbjct: 866 AD 867


>gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14]
          Length = 871

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 85/664 (12%), Positives = 187/664 (28%), Gaps = 165/664 (24%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY----FERTVLKACFNL-- 86
            +  ++   +    C  D        E L       ++H +     F    LK       
Sbjct: 346 VSLCYEAEKIVTIPCDMDADF-----EYLT----GKLSHLAKSVKRFSMCGLKEYLEWLP 396

Query: 87  DIPIHRWICTLVLARSNGL---PSALKAVGEALK--LSSQKMEEGKELIARFCKGETHEC 141
           ++        +V A            + V       L  +K++EG +             
Sbjct: 397 ELTSENGFDAIVAAYLLNPLKNDYNAEDVAREHLNLLIDEKLDEGTKSC----------- 445

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCV 199
                       +  +  Y    V + +++ +        E E+  +     +   G  V
Sbjct: 446 ------------YEAYTAYACVPV-LEKKLEENGMFCLFNEIEMPLVFTLYDMEQAGVKV 492

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256
           +        + +     +L++E+  +      +    ++L   LF +  +     T+   
Sbjct: 493 EGEELKRYGEELGARIVELEKEIYEMAG-EEFNINSPKQLGVILFEKLEMPHAKKTKTGY 551

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL       P   ++   R   ++      + L   +  DGR+         + T
Sbjct: 552 STAADVLDKLAPEYPIVAKILEYRQ-LAKLKSTYADGLANYIGMDGRIHSKFNQ-TITAT 609

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P                             +   +R   +  EG   
Sbjct: 610 GRISSTEPNLQNIPVR-------------------------MELGRLIRKVFVPKEGCVF 644

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + IE R+LA  +G++  ++A+    D++  T ++ F+V   +VT  QR   K + 
Sbjct: 645 VDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVN 704

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y            +  L+                                      
Sbjct: 705 FGIVYG-----ISSFGLSQDLS-------------------------------------- 721

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                   +  + + + +  +    ++     ++                          
Sbjct: 722 -ISRKEAAQYIEHYFESYPGIKTFLDKCVSDAKE-------------------------- 754

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                   GR     ++ ++     +      R            +Q  + DI+   M++
Sbjct: 755 KGYAETLYGRRRPMPELKSSNFMQRSF---GERVAMNAP------IQGTAADIIKIAMIH 805

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYE 669
             +          ++L VHDE++ E  +T+      +    M         +PL  + + 
Sbjct: 806 VNEELKKRNLKSRMILQVHDELLIEADETELEEVQQILQDKMEHAAELL--VPLSVDMHT 863

Query: 670 SKRY 673
            K +
Sbjct: 864 GKNW 867


>gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 885

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 96/650 (14%), Positives = 193/650 (29%), Gaps = 132/650 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A    +    +        + +  K+  E+ ++  + HN   +   L    N DI I  
Sbjct: 341 IAIKVQNEATCIIKIDCKEDILK-FKDVFEDENIEKLGHNLKEDMITL---LNFDINIKN 396

Query: 93  W-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNH 150
           +   + +         +   +     +S+     G K+L     KG+      D      
Sbjct: 397 YTHDSEIAEYILNSTESNYDIN---NISNTYFSRGYKDLEELLGKGKKKIKFSDLKYDEL 453

Query: 151 REAWRLFGE--YCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
            + +  +    Y   DV +      +  +     E  L  +  ++   G   D A+   +
Sbjct: 454 CKYFSFYLNSVYKLRDVQLEKIRKQEMDDLYFEVELPLIEVLSSMELIGIRTDNAILDEI 513

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
              +D +   L+ ++         +    +KL   LF + G  +   T+   +T   VL 
Sbjct: 514 GIDLDNKILNLENDIYEKAG-EEFNINSPKKLGLILFDKLGYPVLKKTKTGYSTNADVLE 572

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCV 323
             KK       V   R + ++     +  L E +N + G +         + TGR S   
Sbjct: 573 KLKKDGDIIDDVLEYR-KLAKLKSTYVEGLKELINVATGHIHSHFNQ-TITSTGRISSTN 630

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  +   +                          +R   ++SEG  LV AD + 
Sbjct: 631 PNLQNIPIKTDEGK-------------------------LIRKAFLSSEGCVLVDADYSQ 665

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA ++ ++  + AFE  +D++  T A+ F V    VT   R+  K +   +    
Sbjct: 666 IELRVLADISKDENMISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKAVNFGIV--- 722

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++    +                                        
Sbjct: 723 -----------YGISDYGLSQ------------------------------NLNIPRKLA 741

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +   + +   +  +     E     +   +NG                            
Sbjct: 742 QEYIENYLLTYDGIKNYMTE---EVKLAKKNGYVKTILN--------------------- 777

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
             R     ++               R            +Q  + DI+   M+   +A   
Sbjct: 778 --RRRYIPELSAKNF---NIRSFGERIAINTP------IQGSAADIIKIAMVKVYRALKE 826

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
                 ++L +HDE++ +  + +      L   +M +       + LK +
Sbjct: 827 NNLKSKLILQIHDELIVDAREDEVETVKKLMRNIMENAVEMV--VKLKVD 874


>gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 871

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 93/654 (14%), Positives = 191/654 (29%), Gaps = 150/654 (22%)

Query: 38  DDHPVELWD-----CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           ++    + D       +      +L+  +E+  V  V H+S    T L    ++DI    
Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY-DIDIQGFD 404

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK--ELIARFCKGETHECLYDRNKPNH 150
              T + A       A   V + +    +K  +    +L A             +   + 
Sbjct: 405 -FDTAIAAYLIDSSKANYEVFDLINRFLEKDIKSDSNDLKAICSSYLKKLYEKLKEMLH- 462

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                      K D+    E++ ++E        L Y+  ++   G+ ++      L   
Sbjct: 463 -----------KEDMD---ELYYKVE------HPLIYVLSSMESIGFKINQDKLEELRVK 502

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
              +  K ++E+  L      +    ++L   LF +  L +   T+   +T Q VL    
Sbjct: 503 FKEQIEKTEKEIYEL-ADEEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLI 561

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P   +V   R   ++     +  L   ++ DG +         + TGR S      Q
Sbjct: 562 DKHPIITKVMYYRQ-ITKINSTYVEGLKNVIDIDGCIHSNFNQTVTT-TGRLSSTEPNLQ 619

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEA 386
           N+P      +E                         +R   I  +    L+  D + IE 
Sbjct: 620 NIPIKYEMGKE-------------------------IRKVFIPQDSDDILISCDYSQIEL 654

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA +A ++  + AFE   D++  T +  F V   +VT   R+  K +   + Y     
Sbjct: 655 RVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDF 714

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
           +                                             A +           
Sbjct: 715 SL--------------------------------------------AQDLKITKKEAAEY 730

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + +++ ++ E  N + +  ++                             ++    R
Sbjct: 731 MAIYFERYPKIKEYLNYVSEYAKE--------------------------KGYVLTILNR 764

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                ++ ++   +        R            +Q  + DI+   M+N          
Sbjct: 765 RRFIPEIKSSNKIVKAL---GERLAMNAP------IQGSAADIIKLAMVNVYNKLREKNL 815

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             +++L VHDE++      +      L    M         + L  +      +
Sbjct: 816 NSELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIK--LNVALDVDLKYGYTW 867


>gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
 gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449]
          Length = 912

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 102/707 (14%), Positives = 201/707 (28%), Gaps = 179/707 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQ-- 55
            +  D E+ S             ++  ++ F+F FD          H        +    
Sbjct: 345 KIGFDCESDSLN----------MQEANLVGFSFCFDGENAYYVPVGHHYLGVGCQLTHTQ 394

Query: 56  ---VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALK 110
               LK         ++ HN  F+ +++     L+        +++L        P  L 
Sbjct: 395 AKIALKRIF---TYPLIGHNLKFDLSLIFHTLELE-HTGEIYDSMILGWLYDSIAPIGLD 450

Query: 111 AVGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                           K+++  F     + + +  +++   +       +Y   D   T 
Sbjct: 451 ----------------KQMLKWFNHTMISFDSVVAKDENFSQVNIAAATQYAAEDAIATF 494

Query: 170 EIFKRLEPLSSKE-------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            ++ RLE +  K                   +   +   G  VD+ L  +L +      +
Sbjct: 495 RLYHRLEEVFYKREWSSILELANKLEYPFIKVLLAMECEGIKVDIPLLESLKEKASEHIS 554

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQA 273
           +L  ++  L      +    ++L   LF   GL          +T +R L +     P  
Sbjct: 555 QLSAQIFELCG-ETFNLNSPQQLAHILFNRLGLKAGRSVKGGLSTDERTLLAIIDAHPVI 613

Query: 274 IQVFNNRMRASRSAVLKLNTLVEA--MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             + + R   ++     +  L+     N   R+  +    G + TGR S      QN+P 
Sbjct: 614 ALILDYR-EVNKLKSTYIEPLLRFGSANDKHRIYTSFLQSG-TATGRLSSKSPNLQNIPV 671

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                 +                         +R   I+ EG  L+  D + IE R+LA 
Sbjct: 672 RREEGRK-------------------------IRQAFISKEGHSLISIDYSQIELRLLAH 706

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
              +   +++F+  +D++  T AR F V   ++   +RAI K +   L Y          
Sbjct: 707 FCKDSSLIESFKQDKDIHFETAARLFGV---ELAAQKRAIAKSINFGLIY---------- 753

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                                                  + A          +   +++ 
Sbjct: 754 ----------------------------------GMGSKKLAQTLQISLKEAKNYIESYF 779

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                +    N   +   +        +   RR     Y         +     R     
Sbjct: 780 ALFPTIKNFLNAQKEFLLE--NGYSQTLLGHRR-----YFDFKNATDFMKANFLR----- 827

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLT 627
                                   +   +I Q  + D++   M    K      + ++L 
Sbjct: 828 ------------------------EGINSIFQGSAADLIKLSMCEIHKRYGHSDFKMLLQ 863

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE++ E P +     A     +M         +PLK      K +
Sbjct: 864 VHDELIFEAPQEKAHIYAQEAAQIMNHIYE--LEVPLKCGISIGKNW 908


>gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
 gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund]
          Length = 878

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 90/650 (13%), Positives = 191/650 (29%), Gaps = 157/650 (24%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
           D   V+ +         ++LK   EN  +  V H+S     VL    N+         T 
Sbjct: 368 DKEEVKYF---------EILKNLFENEKIKKVCHDSKKVYVVLNKH-NITAKNIA-FDTK 416

Query: 98  VLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           + A       +   LK + E + L S K  +                    N+  + +  
Sbjct: 417 IAAYLLQPSKSDYMLKDLIEEMLLLSLKEYDN----------------IKINETYYIKDI 460

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
               E    +  +   ++       + E  L  +  ++   G+ VD      + +    E
Sbjct: 461 YEKLEKDIKESNMEELLY-------TVELPLVEVLASMECAGFRVDENRLTEIGEKFKKE 513

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTP 271
              L++E+  L      + +  ++L   LF +  L +   T+   +T   VL   K   P
Sbjct: 514 IETLEKEIHEL-ADEEFNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHP 572

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++   R   ++     +  L   ++ DG++  +      + TGR S      QN+P 
Sbjct: 573 IIEKIIEYRQ-ITKLDSTYVEGLKNVIDGDGKIHSSFNQTVTT-TGRLSSTEPNLQNIPI 630

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLA 390
                 E                         +R   + +  +  +  AD + IE R+L+
Sbjct: 631 KHEMGRE-------------------------IRKVFVPNNNESVIFSADYSQIELRILS 665

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +A ++  + AF+  +D++  T +  F V   +VT   R+  K +   +           
Sbjct: 666 HIADDEKLIDAFKHHKDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIV---------- 715

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                                                     + +        +     +
Sbjct: 716 ----------------------------------YGIGAFSLSKDINVSRKEAKEYIDTY 741

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
             ++  V +  +E+    E                           +  +     R    
Sbjct: 742 FSRYPNVKKYIDEIISKAE--------------------------VDGFVTTILNRKRYI 775

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDI 624
            ++ +    +        R            +Q  + DI+   M+              +
Sbjct: 776 PEIQSRNKIVRG---FGERLAMNTP------IQGSAADIIKLAMVEVYNELKNRNLKSTL 826

Query: 625 VLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +L VHDE++      +      M+   M +       +PL+A+    + +
Sbjct: 827 ILQVHDELILNVYKDELEEVKNMVVDKMENVMKLL--VPLEADVNAGETW 874


>gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus]
          Length = 876

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 86/665 (12%), Positives = 178/665 (26%), Gaps = 137/665 (20%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
               ++  A    +     +      +        L +           F+     V   
Sbjct: 328 HHAPIVGIALA--NERGRFFLRPETALADPKFLAWLGDETKKKT----MFDSKRAAVALK 381

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++        L+ A       A   V    K+   +     E +  + KG      
Sbjct: 382 WKGIELR-GVVFDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAV--YGKGAKRTVP 438

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +     H           +    +  E+ +  +     E E     +   +   G  VD
Sbjct: 439 DEPTLAEHLARKAAAIWALEE--PLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVD 496

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +   +  +   +++ +  L      +    ++L T LF +  L +   T+   +
Sbjct: 497 TKRLEQMGAELTEQLQAVERRIYELAGQ-EFNINSPKQLGTVLFDKLQLPVLKKTKTGYS 555

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRT 316
           T   VL            + + R    +     +  L++ ++   G++         ++T
Sbjct: 556 TSADVLEKLAPHHEIVEHILHYRQ-LGKLQSTYIEGLLKVVHPVTGKVHTMFNQA-LTQT 613

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKK 375
           GR S      QN+P       +                         +R   +       
Sbjct: 614 GRLSSVEPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPDWL 648

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           +  AD + IE RVLA +A +   ++AF  G D++  T    F+V+   VT + R   K +
Sbjct: 649 IFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDVTANMRRQAKAV 708

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    A                                
Sbjct: 709 NF--------------GIVYGISDYGLAQ------------------------------N 724

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                       + +      V +  + + Q  +Q    G                    
Sbjct: 725 LNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQ---KGYVTTLLH------------- 768

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                     R     D+ +             R            +Q  + DI+ + M+
Sbjct: 769 ----------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGSAADIIKKAMI 809

Query: 616 NA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
           +        +    ++L VHDE++ E P  +      L   +M      A  +PLK + +
Sbjct: 810 DLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAV--ALRVPLKVDYH 867

Query: 669 ESKRY 673
               +
Sbjct: 868 YGPTW 872


>gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
 gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1]
          Length = 878

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 178/659 (27%), Gaps = 148/659 (22%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY---FERTVLKACFNLDI 88
            F+    D                 + E L         H +    ++         +  
Sbjct: 343 GFSVAVAD-KTYYLPIT-GENELSKIMELLT-------GHQALTVVYDAKTWHNLSAVAS 393

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                    + A                    QK+           + +  +     N+ 
Sbjct: 394 DTA-VFDVSLAAYLLDPLEN--------GYPPQKLAARYLDRILPEEPKKKKGEAVCNRD 444

Query: 149 NHREAWRLFGE-YCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAH 205
               A R   + Y   D     ++ +       ++ EL        +   G  VD+    
Sbjct: 445 FSCAAVRTLYDLYPLLD----EKLKEASLDHLYEDLELPLAYTLARMERTGVAVDLQALD 500

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
            +          L+QE+ SL      +    ++L   LF + GL     T+   +T  +V
Sbjct: 501 AMKTEFRERIGALEQEIYSLAG-EEFNLNSPKQLGQILFDKLGLPALKKTKTGYSTDAKV 559

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321
           L           ++   R    +     L  L + +N   GR+         + TGR S 
Sbjct: 560 LEELAPHHEVVAKILKYR-TLIKILTTYLEGLSKLVNEQTGRIHTHFNQ-TVTATGRLSS 617

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P                                 VR   +   +G  L+ AD
Sbjct: 618 TEPNLQNIPIRLEEGRR-------------------------VRRAFVPGKKGNLLLSAD 652

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA ++ +   + +F   ED++  T A  F V P  VT + R   K +   + 
Sbjct: 653 YSQIELRILAHVSKDPVLIDSFRKEEDIHRRTAAEVFGVLPEDVTPELRDRAKAVNFGIV 712

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +         +   E      +F   + E+  ++        
Sbjct: 713 YGIS-----DYGLSQQLKIPRQEAKEYISRYFERLPGVRDFIHNVVEDAKKNGYVTTL-- 765

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  K        
Sbjct: 766 ---------------------------------------LNRRRYLPDINAKNFNQRSF- 785

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT                   +Q  + DI+   M+   +A
Sbjct: 786 --------------AERTAMNT------------------PIQGTAADIIKLAMLRVEEA 813

Query: 621 GY-----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                   +VL VHD++V E  +    N + L    M S    A  +PL  +      +
Sbjct: 814 LAGMDDVQMVLQVHDDLVFEVKEESLINVARLVKKQMESALELA--VPLTVDVKAGLNW 870


>gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
 gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43]
          Length = 871

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 93/654 (14%), Positives = 191/654 (29%), Gaps = 150/654 (22%)

Query: 38  DDHPVELWD-----CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           ++    + D       +      +L+  +E+  V  V H+S    T L    ++DI    
Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY-DIDIQGFD 404

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK--ELIARFCKGETHECLYDRNKPNH 150
              T + A       A   V + +    +K  +    +L A             +   + 
Sbjct: 405 -FDTAIAAYLIDSSKANYEVFDLINRFLEKDIKSDSNDLKAICSSYLKKLYEKLKEMLH- 462

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                      K D+    E++ ++E        L Y+  ++   G+ ++      L   
Sbjct: 463 -----------KEDMD---ELYYKVE------HPLIYVLSSMESIGFKINKDKLEELRVK 502

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
              +  K ++E+  L      +    ++L   LF +  L +   T+   +T Q VL    
Sbjct: 503 FKEQIEKTEKEIYEL-ADEEFNVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLI 561

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P   +V   R   ++     +  L   ++ DG +         + TGR S      Q
Sbjct: 562 DKHPIITKVMYYRQ-ITKINSTYVEGLKNVIDIDGCIHSNFNQTVTT-TGRLSSTEPNLQ 619

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEA 386
           N+P      +E                         +R   I  +    L+  D + IE 
Sbjct: 620 NIPIKYEMGKE-------------------------IRKVFIPQDSDDILISCDYSQIEL 654

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA +A ++  + AFE   D++  T +  F V   +VT   R+  K +   + Y     
Sbjct: 655 RVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYGISDF 714

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
           +                                             A +           
Sbjct: 715 SL--------------------------------------------AQDLKITKKEAAEY 730

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + +++ ++ E  N + +  ++                             ++    R
Sbjct: 731 MAIYFERYPKIKEYLNYVSEYAKE--------------------------KGYVLTILNR 764

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                ++ ++   +        R            +Q  + DI+   M+N          
Sbjct: 765 RRFIPEIKSSNKIVKAL---GERLAMNAP------IQGSAADIIKLAMVNVYNKLREKNL 815

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             +++L VHDE++      +      L    M         + L  +      +
Sbjct: 816 NSELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIK--LNVALDVDLKYGYTW 867


>gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
 gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN]
 gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN]
 gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16]
          Length = 885

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/670 (14%), Positives = 198/670 (29%), Gaps = 163/670 (24%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERTVLKA--- 82
              + F+    D+        +D  +   Q L   LE+  +     N  F+   LK    
Sbjct: 339 ADFVGFSLKMGDN----IYVSNDVSLLTKQPLLSLLEDQAIAK---NV-FD---LKRTMV 387

Query: 83  -CFNLDIPIHRW-ICTLVLARSNGLPSALKAVGE------ALKLSSQKMEEGKELIARFC 134
             + L I  H      L+ +      +    +GE         L       GK   A   
Sbjct: 388 GLYRLGIKSHNMNYDMLLASYLVNNENNSNDLGEICQLYNYYDLQPDIDIYGKGKKAAIP 447

Query: 135 KGET----HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
           +               +       +   E+ + D+  T E              +  +  
Sbjct: 448 EETVFFNHLAGKVLAIEVLKPTLLKKLTEHEQDDLYETIE------------MPVANVLA 495

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G   D +    L        T+L+ ++  L  G   +    ++L   LF + GL 
Sbjct: 496 KMEITGLKTDASTLVQLGNDFAQRLTELEADIY-LEAGERFNINSPKQLGQILFEKLGLP 554

Query: 251 LEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
               T+   +T   VL   K+ +P   +V + R   ++     +  L++ +  DGR+   
Sbjct: 555 PIKKTKTGYSTSVEVLEQLKEQSPIVQKVLDYRQ-IAKIQSTYVKGLLDVIQPDGRVHTR 613

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
            Q    + TGR S      QN+P      ++                         +R  
Sbjct: 614 YQQ-TLTATGRLSSVDPNLQNIPVRLEEGKK-------------------------IRKA 647

Query: 368 VIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
            + S  +G      D + +E RVLA ++G++   +AF+TG D++  T  + F++  P +V
Sbjct: 648 FVPSNSDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPNEV 706

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T + R   K +                    G++    +                     
Sbjct: 707 TPNMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 732

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++ ++ +  ++      +              
Sbjct: 733 ----------NLGISRKQAKEFIDNYFEQYPKIKDYMDKEINFARE-------------- 768

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                       N  +     R     D+               R            +Q 
Sbjct: 769 ------------NGYVETIMHRRRYLPDIHAKNF---NVRSFAERTAINSP------IQG 807

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+   M+N  K          +++ VHDE++ + P  +      +   +M +    
Sbjct: 808 GAADIIKIAMINMQKKLDELHLKTKMLIQVHDELIFDVPADELETIKKVVPEVMQNAVQ- 866

Query: 658 AKGLPLKAEG 667
              +PL A+ 
Sbjct: 867 -LDVPLVADS 875


>gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I
          Length = 876

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 85/665 (12%), Positives = 178/665 (26%), Gaps = 137/665 (20%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
               ++  A    +     +      +        L +           F+     V   
Sbjct: 328 HHAPIVGIALA--NERGRFFLRPETALADPKFLAWLGDETKKKT----MFDSKRAAVALK 381

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++        L+ A       A   V    K+   +     E +  + KG      
Sbjct: 382 WKGIELR-GVVFDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAV--YGKGAKRTVP 438

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +     H           +    +  E+ +  +     E E     +   +   G  VD
Sbjct: 439 DEPTLAEHLVRKAAAIWALEE--PLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVD 496

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +   +  +   +++ +  L      +    ++L T LF +  L +   T+   +
Sbjct: 497 TKRLEQMGAELTEQLQAVERRIYELAGQ-EFNINSPKQLGTVLFDKLQLPVLKKTKTGYS 555

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRT 316
           T   VL            + + R    +     +  L++ ++   G++         ++T
Sbjct: 556 TSADVLEKLAPHHEIVEHILHYRQ-LGKLQSTYIEGLLKVVHPVTGKVHTMFNQA-LTQT 613

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKK 375
           GR S      QN+P       +                         +R   +       
Sbjct: 614 GRLSSVEPNLQNIPIRLEEGRK-------------------------IRQAFVPSEPDWL 648

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           +  AD + IE RVLA +A +   ++AF  G D++  T    F+V+   VT + R   K +
Sbjct: 649 IFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDVTANMRRQAKAV 708

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    A                                
Sbjct: 709 NF--------------GIVYGISDYGLAQ------------------------------N 724

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                       + +      V +  + + Q  +Q    G                    
Sbjct: 725 LNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQ---KGYVTTLLH------------- 768

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                     R     D+ +             R            +Q  + DI+ + M+
Sbjct: 769 ----------RRRYLPDITSRNF---NVRSFAERTAMNTP------IQGSAADIIKKAMI 809

Query: 616 NA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
           +        +    ++L VHDE++ E P  +      L   +M    +    +PLK + +
Sbjct: 810 DLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAVT--LRVPLKVDYH 867

Query: 669 ESKRY 673
               +
Sbjct: 868 YGPTW 872


>gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756]
 gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 871

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/601 (14%), Positives = 167/601 (27%), Gaps = 144/601 (23%)

Query: 87  DIPIHRWICTLVLARSNGL---PSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECL 142
           ++        +V A            + V E  L ++     E                 
Sbjct: 397 NVKQSSAFDVIVAAYLLNPLKSDYTYEDVAEQYLGIAGGIQAELNVKCCYEAYTAFAAAS 456

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
              NK    E  RLF E                      E  L +    +   G  V+  
Sbjct: 457 VLDNKLKEAEMDRLFYE---------------------IEMPLVFTLYEMESAGVKVEAE 495

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
                   +  +  +L+ ++  +      +    ++L   LF +  +     T+   +T 
Sbjct: 496 ALKLYGDQLGEQIIQLEHQIYEMAG-EEFNINSPKQLGVILFEKLNMPHAKKTKTGYSTA 554

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL    +  P   ++   R   ++      + L   +  DGR+ G       + TGR 
Sbjct: 555 ADVLEKLAEEYPIVSKILEYRQ-LAKLKSTYADGLAVFIGDDGRIHGKFNQ-TVTATGRL 612

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P                             +   +R   +  E    V A
Sbjct: 613 SSTEPNLQNIPVR-------------------------MELGRMIRKVFVPKEDCVFVDA 647

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA  +G++  +KA+    D++  T ++ F+    +VT  QR   K +   +
Sbjct: 648 DYSQIELRVLAHCSGDEQLIKAYREATDIHRMTASQVFHTPFDEVTDLQRRNAKAVNFGI 707

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y            +  L+                                         
Sbjct: 708 VYGIS-----SFGLSMDLS---------------------------------------IT 723

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                   + + + +  V +    L  + E   E G A+                     
Sbjct: 724 RKEAAEYIEHYFETYPGVKKF---LDDSVENAKEKGYAVTL------------------- 761

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                GR     ++ ++            R            +Q  + DI+   M++  K
Sbjct: 762 ----FGRRRPVPELKSSNFMQRNF---GERVAMNAP------IQGTAADIMKIAMIDVHK 808

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672
                     ++L VHDE++ E   ++      +    M +       +PL  + +  K 
Sbjct: 809 ELKKRNMKSRMILQVHDELLIEAECSEVDEVKEILRDKMENAVK--LSVPLIVDMHTGKN 866

Query: 673 Y 673
           +
Sbjct: 867 W 867


>gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 883

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 92/636 (14%), Positives = 192/636 (30%), Gaps = 135/636 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRW-ICTLVLARSNGLPSALK 110
           + +K  LE++ V     N  F+    +    L    I +       L+++      +   
Sbjct: 362 KQVKAILESSTVQK---NV-FDAK--RTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSN 415

Query: 111 AV---GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            V    +    ++ K +E           +           +H        +    D+  
Sbjct: 416 DVGTVAKLHGFANIKTDE----EVYGKGAKKKIDPEAPEFFDHIVHKAKAIDQLHNDMFK 471

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             +   +       E ++ ++   +   G  V+      +         +++Q +     
Sbjct: 472 ALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAG 531

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    ++L   LF +  L +   T+   +T   VL       P    V N R   S
Sbjct: 532 -EEFNIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNYRQ-IS 589

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     ++ L++ ++ +     T      ++TGR S      QN+P  S           
Sbjct: 590 KLQSTYIDGLLKVIHKNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRSEEGR------- 642

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +R   + S E  ++  +D + IE RVLA + G++   +AF 
Sbjct: 643 ------------------LIRQAFVPSHEDWQIWSSDYSQIELRVLASITGDKNMQEAFR 684

Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            GED++ TT  R F + +   VT + R   K +                    G++    
Sbjct: 685 EGEDIHATTARRIFGLASNDDVTPELRRQAKAVN--------------FGIVYGISDYGL 730

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A+                                        +  + + +++  V +   
Sbjct: 731 AN------------------------------NTGISRKQAHQFIQRYFEEYPGVKKYTE 760

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           ++ +  +                           +  +   + R     D+ +       
Sbjct: 761 DIVEFAKN--------------------------HGYVETIAHRRRYLPDIHSRNF---N 791

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPD 638
                 R            +Q  + DI+   M+N  +A       ++L VHDE++ E P+
Sbjct: 792 LRSFAERTAMNTP------IQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFEVPN 845

Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            +      L   +M S       +PLK E +  K +
Sbjct: 846 DEMETVEKLIPKVMDSAIK--LNIPLKVESHWGKTW 879


>gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM
           15897]
          Length = 867

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 96/658 (14%), Positives = 193/658 (29%), Gaps = 135/658 (20%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDI 88
           ++ +   ++D         +     +     L++       ++      V+      ++I
Sbjct: 327 ILGYGI-YNDEQAYFISYENALK-DESFLAYLKDETKKKYGYDIK--SAVIGSRWNGVEI 382

Query: 89  PIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
             +      + +          LK V         + +E       F KG       D  
Sbjct: 383 NGYT-FDLSLASYVLEPAIKEELKYVCTHFDYDGVQYDE-----EVFGKGAKKHIPDDAL 436

Query: 147 KPNHREAWRLFGEYCKGDVTV-TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
              H  +      Y   DV     +  K+ E     E  +  +   +   G  +D+ +  
Sbjct: 437 LAQHTVSKAKAI-YELKDVVTKELKDKKQYELYEDIELPVTRILGEMEFAGTEIDLDVLK 495

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
            +++  D    KL  ++  ++     +    ++L   LF + GL     T+   +T Q V
Sbjct: 496 EMDEAFDETIEKLSNDIYRISGTT-FNISSPKQLGQVLFEDLGLKGGKKTKTGYSTSQDV 554

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L       P    V   R   ++ +   L  L E +  D ++    +    + TGR S  
Sbjct: 555 LEKIIDAHPVVPLVLEYR-MLTKLSSTYLKGLQEQVFPDNKIHTIYKQ-TLTHTGRLSSV 612

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P  S   +                          +R   ++  G  LV  D +
Sbjct: 613 DPNLQNIPVRSEEGK-------------------------LIRKAFVSHNGY-LVSFDYS 646

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R+LA MA     + AF  G+D++  T A  F V   +VT   R+  K +   +   
Sbjct: 647 QIELRILAHMAHVTNLIDAFNQGKDIHRHTAALVFGVKDEEVTPQMRSQAKAVNFGII-- 704

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G++    +  +                                    
Sbjct: 705 ------------YGMSEFRLSKDI------------------------------GMSIAE 722

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                  + + +  V    +E+ +  ++                             +  
Sbjct: 723 ARNFINKYFETYPEVKTYMDEVVEVCKK--------------------------QGYVST 756

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
              R      + +    +    ++               +Q    DIL   M+   KA  
Sbjct: 757 LLNRKRYIPTINDKNFMVRQQAQRY---------AMNTPIQGTGADILKLAMIEVDKALK 807

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE++ +  + +     S++   M +       +PL  EG  +K +
Sbjct: 808 VHHLKSQMILQVHDELIFDVFEDELEEVMSLVKEKMENCIK--MDVPLIVEGNYAKNW 863


>gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7]
 gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7]
          Length = 886

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 82/654 (12%), Positives = 178/654 (27%), Gaps = 125/654 (19%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
              G+ D                  K   +  +      ++      L+      + I  
Sbjct: 341 ICIGWGDDQQIYIAEPEVVFASDDFKNWAKEKETKKQVFDAKRTYVALRRQ---KVDITS 397

Query: 93  W-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                L+ +         K + E             E +                  +  
Sbjct: 398 ISFDILLASYLLNTKDNSKDLSEVAMEHDYYDVSSDESVYGKGAKIAIPEDKKVTYDHVA 457

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
              +      K       E   + +     E  L  +   +   G  V+      + +  
Sbjct: 458 RKIKAIRILSKQLSD-NLEKNVQTKLFDEMELPLSIVLAEMELTGVKVNDKRLMEMKEEF 516

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268
            +    ++Q +  L      +    ++L   LF + G  +   T+   +T   VL   K+
Sbjct: 517 AIRLNDIEQRVYELAG-EKFNLNSPKQLGVILFEKMGYPVVKKTKTGYSTAVDVLEQLKE 575

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P    +   R   ++     +  L++ ++ +     T      ++TGR S      QN
Sbjct: 576 QAPIVEHILEYRQ-IAKIQSTYIEGLLKVIDKETGKIHTRYMQTIAQTGRLSSVDPNLQN 634

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEAR 387
           +P       +                         +R   + S EG K+  +D + IE R
Sbjct: 635 IPIRLEEGRK-------------------------IRQAFVPSHEGWKIFASDYSQIELR 669

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAK 446
           VL  ++ ++   +AF  G+D++ +T  R F ++ P +V+ + R   K +           
Sbjct: 670 VLGHVSNDKLLKEAFIEGQDIHSSTAMRVFGISSPEEVSSEMRRRAKAVNF--------- 720

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++    +                                        +R 
Sbjct: 721 -----GIVYGISDYGLSQ------------------------------NLGISRKEAQRF 745

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + +K+  V     ++ +  +                              +     R
Sbjct: 746 IDTYFEKYPGVKTYMEDIVREAKD--------------------------KGFVETLFHR 779

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KA 620
                ++ +             R            +Q  + DI+   M+         K 
Sbjct: 780 RRYLPEINSRNF---NLRSFAERTAINTP------IQGSAADIIKIAMIKMDERLKESKL 830

Query: 621 GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              ++L VHDE++ E P+ +      ++  +M         +PLK +    K +
Sbjct: 831 KATMLLQVHDELIFEAPEEEIEELKALVVEVMEGAVE--LSVPLKVDSNSGKSW 882


>gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463]
          Length = 650

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/676 (14%), Positives = 207/676 (30%), Gaps = 140/676 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73
           L   G   +      + F+   +D          D  + +   +K  LE+  +     N 
Sbjct: 93  LEMLGANYHLAPF--VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 143

Query: 74  YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            F+     V      +      +   L+ +      +    +GE   L        K  +
Sbjct: 144 -FDLKRTMVAAHRLGIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 199

Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
             + KG++     D ++  +  A +    E  K  +    +  ++     + E     + 
Sbjct: 200 EVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLKDHEQDALFDTIEIPTARVL 259

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V+ +    L     V+  +L+ ++         +    ++L   LF + GL
Sbjct: 260 ARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAG-EKFNLNSPKQLGHILFEKLGL 318

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL   K  +P   ++ + R   ++     +  L++ +  DGR+  
Sbjct: 319 PVIKKTKTGYSTAVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 377

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P  +   +                          +R 
Sbjct: 378 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 411

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             +       +   D + +E RVLA ++G+Q   +AF+TG D++  T  + F++  P +V
Sbjct: 412 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEV 471

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R   K +                    G++    +                     
Sbjct: 472 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 497

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++ ++ +  N   +A ++  + G A       
Sbjct: 498 ----------NLGISRKRAQEFIDNYFEQYPQIEDYMN---KAVQEARDKGYAETIMH-- 542

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R     D+   +    T      R            +Q 
Sbjct: 543 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 572

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M S    
Sbjct: 573 SAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 631

Query: 658 AKGLPLKAEGYESKRY 673
              +PL A+      +
Sbjct: 632 -LDVPLIADSGWGHNW 646


>gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
 gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03]
          Length = 886

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/661 (14%), Positives = 205/661 (31%), Gaps = 141/661 (21%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL--- 86
            F+    D          D V+ Q   L++ LE+  +     N  F+    +    L   
Sbjct: 344 GFSLKVGDK----IYVSKDVVLLQETPLRQMLEDKKIKK---NV-FDIK--RTYVGLHRL 393

Query: 87  DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           DI         L+ +      +    +GE   L        K  +  + KG+      D 
Sbjct: 394 DIDAEGLDYDMLLASYLVNNENNSNDLGEVAHL--YGDYSVKTDLEVYGKGKKKAVPEDD 451

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H  A  +  E  K  +    +  ++ +   + E  + ++   +   G  V+ ++ +
Sbjct: 452 EFFEHLAAKVVVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLN 511

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
            L     ++  +L+ ++         +    ++L   LF +  L     T+   +T   V
Sbjct: 512 QLGNDFALKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLNLPPIKKTKTGYSTSVEV 570

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L   K  +P   ++ + R   ++     +  L+E +  DGR+         + TGR S  
Sbjct: 571 LEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLECIQPDGRIHTRYLQ-TLTATGRLSSV 628

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVVAD 380
               QN+P  +   +                          +R   +    +G      D
Sbjct: 629 DPNLQNIPTRTDEGK-------------------------QIRKAFVPSTKDGYIF-SCD 662

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439
            + +E RVLA ++G++   +AF++G D++  T  + F++  P +VT   R   K +    
Sbjct: 663 YSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF-- 720

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++    +                                    
Sbjct: 721 ------------GIVYGISDYGLSK------------------------------NLGIS 738

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +     + +++ ++ +      +A ++  E G A                      
Sbjct: 739 RKQAKTFIDNYFEQYPQIKDYM---DKAIKEAREKGYAETIMH----------------- 778

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                 R     D+ +             R            +Q  + DI+   M+N  K
Sbjct: 779 ------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMINMQK 823

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
                     +VL VHDE++ + P  +      +   +M S  +    +PL A+      
Sbjct: 824 KLDELHLKTKMVLQVHDELIFDVPKAELDTIKKIVPEVMQSAVT--LDVPLIADSNWGHN 881

Query: 673 Y 673
           +
Sbjct: 882 W 882


>gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
 gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US]
          Length = 885

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 95/668 (14%), Positives = 192/668 (28%), Gaps = 159/668 (23%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERT---VLKA 82
              + F+    D+        +D  +   Q L+  LE+  V     N  F+     V   
Sbjct: 339 ADFVGFSLKMGDN----VYVSNDVSLLTKQPLQTLLEDQAVNK---NV-FDLKRTIVGLH 390

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGE------ALKLSSQKMEEGKELIARFCKG 136
              +      +   L+ +      +    +GE         L       GK   A     
Sbjct: 391 RLGIKANNINY-DMLLASYLVNNENNSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDE 449

Query: 137 ET----HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
           E             +       +   E+ + D+  T E              +  +   +
Sbjct: 450 EIFFNHLAGKVLAIEALKPTLLKRLTEHEQDDLYETIE------------MPVANVLAKM 497

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G   D +    L        T+L+ ++  L  G   +    ++L   LF +  L   
Sbjct: 498 EITGLKTDASTLVQLGNDFGQRLTELEADIY-LEAGERFNINSPKQLGQILFEKLELPPI 556

Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             T+   +T   VL   K  +P   +V + R   ++     +  L++ +  DGR+    Q
Sbjct: 557 KKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQ-IAKIQSTYVKGLLDVIQPDGRVHTRYQ 615

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               + TGR S      QN+P      ++                         +R   I
Sbjct: 616 Q-TLTATGRLSSVDPNLQNIPVRLEEGKK-------------------------IRKAFI 649

Query: 370 A--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426
               +G      D + +E RVLA ++G++   +AF+TG D++  T  + F++  P +VT 
Sbjct: 650 PSNKDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTP 708

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +                    G++    +                       
Sbjct: 709 NMRRHAKAVNF--------------GIVYGISDYGLSK---------------------- 732

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                            +     + +++ ++ +  ++      +                
Sbjct: 733 --------NLGISRKQAKEFIDNYFEQYPKIKDYMDKEINFARE---------------- 768

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                        +     R     D+               R            +Q  +
Sbjct: 769 ----------KGYVETIMHRRRYLPDIHAKNF---NVRSFAERTAINSP------IQGGA 809

Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
            DI+   M+N  K          +++ VHDE++ + P  +      +   +M +      
Sbjct: 810 ADIIKIAMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQNAVH--L 867

Query: 660 GLPLKAEG 667
            +PL A+ 
Sbjct: 868 DVPLVADS 875


>gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX
 gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 11 Base Pairs Of Duplex Dna After Addition
           Of Two Datp Residues
 gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment
           Complexed To 9 Base Pairs Of Duplex Dna
          Length = 580

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 181/668 (27%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 32  HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 86  WKGIELCGVSFD-LLLAAYLLDPAQGVDDVRAA-----AKMKQYEAVRPDEAVYGKGA-- 137

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +  D +   T+     
Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQAL 314

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 410 KAVNF--------------GIVYGISDYGLAQ---------------------------- 427

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 569 DYHYGSTW 576


>gi|332687082|ref|YP_004456856.1| DNA polymerase I [Melissococcus plutonius ATCC 35311]
 gi|332371091|dbj|BAK22047.1| DNA polymerase I [Melissococcus plutonius ATCC 35311]
          Length = 887

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 88/658 (13%), Positives = 180/658 (27%), Gaps = 134/658 (20%)

Query: 33  FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
               + +        +        Q   + L +       +++    T L       +  
Sbjct: 343 IGIAWGNKQTIYVTENLALFEE--QAFIDWLFDETCQKQVYDAKRTYTALNRYVG-KMQG 399

Query: 91  HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 L+ A              V      +  + +E           +          
Sbjct: 400 IS-FDILLAAYLLNTNDTNTDIECVARQYGYTDIQSDEA----VYDRGAKKKVPQEKEIF 454

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
            NH        EY    +        +    S  E  L  +   +   G  VD      +
Sbjct: 455 YNHLAHKIKAIEYLSEKLAADLVEKNQANLFSEMELPLSRILADMEITGIHVDAHRLEEM 514

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
                 +   ++Q++ +       +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 515 QGEFSDQLKAIEQKIYTEAG-EEFNINSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 573

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K+  P    +   R   ++     +  L++ +  D ++         ++TGR S    
Sbjct: 574 QLKERAPIVEDILIYRQ-IAKIQSTYVEGLLKVIQPDHKVHTRYLQ-TLTQTGRLSSVDP 631

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAG 383
             QN+P       +                         +R   I  E    +  +D + 
Sbjct: 632 NLQNIPIRLEEGRK-------------------------IRQAFIPREKDWLIYSSDYSQ 666

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQ 442
           IE RVLA ++ ++    AF   +D++ +T  R FN++ P +VT + R   K +       
Sbjct: 667 IELRVLAHISNDEHLKAAFLEQQDIHASTAMRVFNLSSPEEVTPNMRRQAKAVNF----- 721

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G++    +  ++                                   
Sbjct: 722 ---------GIVYGISDYGLSKNLEI------------------------------SRQQ 742

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            ++    +  K+  V     E+ +  +                              +  
Sbjct: 743 AQQYIDTYFNKYPSVKTYMEEIVREAKD--------------------------KGYVET 776

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
              R    +D+ +             R            +Q  + DIL   M+   +   
Sbjct: 777 LYHRRRYLKDINSRN---YNLRSFAERTAINTP------IQGSAADILKIAMIQMDRRLK 827

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE+V E P  +      +   +M    S    +PL A+    K +
Sbjct: 828 EENIQATMLLQVHDELVFEVPAAELEKLDKIVKEVMEKCVS--LTVPLIADSNWGKTW 883


>gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
 gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus V713p Mutant Bound To G:dctp
          Length = 579

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 87/668 (13%), Positives = 180/668 (26%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 31  HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 84

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 85  WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 136

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 137 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 195

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 196 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 254

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +    +   T+     
Sbjct: 255 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPATKKVHTIFNQAL 313

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 314 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 348

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 349 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 408

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 409 KAVNF--------------GIPYGISDYGLAQ---------------------------- 426

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 427 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 471

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 472 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 509

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 510 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 567

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 568 DYHYGSTW 575


>gi|299688943|pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus Y714s Mutant Bound To G:t
           Mismatch
          Length = 580

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 86/661 (13%), Positives = 178/661 (26%), Gaps = 141/661 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNLDIP 89
                 +     +      +        L +         S F+     V      +++ 
Sbjct: 37  VGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALKWKGIELX 92

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
              +   L+ A        +  V  A      KM++ + +               R  P+
Sbjct: 93  GVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA---KRAVPD 143

Query: 150 HREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVAL 203
                            + R    E+ +  +       EQ L  +   +   G  VD   
Sbjct: 144 EPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKR 203

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
              + + +  +   ++Q +  L      +    ++L   LF +  L +   T+   +T  
Sbjct: 204 LEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSA 262

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL            + + R    +     +  L++ +  D +   T+     ++TGR S
Sbjct: 263 DVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLS 321

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVA 379
                 QN+P       +                         +R   + SE    +  A
Sbjct: 322 STEPNLQNIPIRLEEGRK-------------------------IRQAFVPSESDWLIFAA 356

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   K +    
Sbjct: 357 DYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVN--- 413

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                          +G++    A                                    
Sbjct: 414 -----------FGIVSGISDYGLAQ------------------------------NLNIS 432

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                   + + +    V           ++  + G                        
Sbjct: 433 RKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH----------------- 472

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-- 617
                 R     D+ +             R            +Q  + DI+ + M++   
Sbjct: 473 ------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKKAMIDLNA 517

Query: 618 ----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
                +    ++L VHDE++ E P  +      L   +M    +    +PLK + +    
Sbjct: 518 RLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKVDYHYGST 575

Query: 673 Y 673
           +
Sbjct: 576 W 576


>gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
 gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15]
          Length = 865

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 88/672 (13%), Positives = 180/672 (26%), Gaps = 154/672 (22%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKA 82
           Y E+  +I F     D            ++     ++ +E+ D   +  ++      L+ 
Sbjct: 322 YMEE-DIIGFGIATPDQ----IYVASAELVDDPAFRDWIES-DHQKICLDAKQAAFALRK 375

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                + +  +                  +      ++     G  ++    +       
Sbjct: 376 H---GLKLTAFDD----------LLLAGYLLNLSGGTTLASIAGHYMLMAPNEEAVLGKG 422

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTI 192
             R  P           Y      +   +F +++      Q+             +   +
Sbjct: 423 AKRLAPADDV----LHPYLAEKARMIELLFPKVKEELKANQQFELYETLERPLSGVLAEM 478

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VDV     +   +      L+Q +         +    ++L   LF +  L   
Sbjct: 479 EWTGIRVDVGTLQEMQHDLAGRLHDLEQLIYGEVG-EEFNINSPKQLGVILFEKMELPAF 537

Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             T+   +T   VL   + L P    +   R    +     +  L + +  DG++     
Sbjct: 538 KKTKTGYSTAADVLEKLRPLHPVIDHIMLYR-ELQKLQSTYVEGLQKVIKEDGKIHTRFA 596

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
              A +TGR S      QN+P       +                         +R   +
Sbjct: 597 QTIA-QTGRLSSVNPNLQNIPVRIEEGRK-------------------------IRKAFV 630

Query: 370 A-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
               G  L  AD + IE RV+A M+ ++  ++AF    D++  T +  F VAP  VT + 
Sbjct: 631 PSEPGWSLYAADYSQIELRVMAHMSEDKTLVQAFLDDADIHTQTASSVFGVAPNDVTGNM 690

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++    +                         
Sbjct: 691 RRQAKAVNF--------------GIIYGISDYGLSQ------------------------ 712

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          +     + +   ++    +   +                      
Sbjct: 713 ------NLNISRKEAQDFIDRYFELFPQIKLFMDAAIEKAR------------------- 747

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                   N  +     R     D+ +             R            +Q  + D
Sbjct: 748 -------MNGFVETLMNRRRNIPDINSKNF---NLRGFAERTAINTP------IQGSAAD 791

Query: 609 ILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGL 661
           I+ + M++   A         ++L VHDE++ E PD +      L    M         +
Sbjct: 792 IIKKAMLDVHAALEQSPLRARLLLQVHDELIFEAPDEELDALKTLVKQAMEQTVQ--LSV 849

Query: 662 PLKAEGYESKRY 673
           PL+ +G     +
Sbjct: 850 PLRVDGDAGHSW 861


>gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251]
 gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251]
          Length = 902

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 95/702 (13%), Positives = 199/702 (28%), Gaps = 167/702 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV- 56
            +  D ET               E+  ++ F+F F++         H        + Q  
Sbjct: 333 IVAFDTETTGLD----------YENDSLVGFSFCFNEDEAYYVPIAHFYLGVGEQISQED 382

Query: 57  ----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110
               +K+   +    +V HN  F+   +         +  +  +++LA         +L 
Sbjct: 383 AKIAIKKIFNS---RVVGHNIKFDLHFVIRFLGEG-ELDIFADSMILAWLINPESALSLD 438

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E  KL   KM   KE                + +     A      Y   D  +T  
Sbjct: 439 KLSE--KLLEHKMITFKE-------------SVKKGETFASVALEEACNYAAEDAYITLR 483

Query: 171 IFKRLEPLS-------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           ++     +                E         +   G  ++               ++
Sbjct: 484 LYYLFLEMLKDQGAEHLIEEAKEVEFPFIKTLLKMEMHGIELNSLFLEQFLAEAKDSLSE 543

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274
           L +++  L   L  +    ++L   LF + GL     T+   +T ++VL+S         
Sbjct: 544 LTKKIYEL-ASLEFNINSTQQLGNVLFEQLGLPTSKKTKTGYSTDEKVLNSLLGEHEIIP 602

Query: 275 QVFNNRMRASRSAVLKLNTLVEA--MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            +   R    +     +  L++    + + R+  +    G + TGR S      QN+P  
Sbjct: 603 YLLEYR-EVYKLYSTYIEPLLKLSQQDKESRIHTSFVQTGTT-TGRLSSKNPNLQNIPTR 660

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +    +                         +R   +A EGKKL+  D + IE R+LA  
Sbjct: 661 TALGTK-------------------------IREAFVAPEGKKLIGIDYSQIELRLLAHF 695

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
             ++  ++AF   +D+++ T    F     +    +R + K +   L Y  G K   +  
Sbjct: 696 TQDRVLVEAFMQDKDIHMQTAIALFG---EEDAPLKRNVAKTVNFGLLYGMGQKKLSET- 751

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
               L + T             +   +++ R + +   E    +  +        + +  
Sbjct: 752 ----LKITTAEAKEIIERYFSSFPSVKSYFRSIVDFSKEAGYVETLLKR------RRYFD 801

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
             S          +    +I  G A    K                              
Sbjct: 802 YESASPMFRAAYEREAVNSIFQGSASDIIKL----------------------------- 832

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
                  +N   + +  E                     + ++                +
Sbjct: 833 ------SMNKIHKLIEDEKLNA-----------------KMLLQIHDE-----------L 858

Query: 633 VCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + E   ++         ++M +       +PLKA      ++
Sbjct: 859 IFEVDTSEAEILGEKFKNIMQNIMP--LNIPLKASMKIGDKW 898


>gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 917

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 92/700 (13%), Positives = 197/700 (28%), Gaps = 154/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             L +D ET SP                ++  +F   +         ++  +        
Sbjct: 340 RVLSVDTETTSPNP----------AMAELVGISFSNQEKTGFYVSVKNNASLFQDKSLNL 389

Query: 55  QVLKEAL---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108
             ++E L    ++ V  V  N  ++  VL+      +   +   T++ +           
Sbjct: 390 DEVREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFVLNNIQ-FDTMLASYVLRPEGRRHN 447

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  + +              L       E       + K           EY   D  VT
Sbjct: 448 MDDLAKEF------------LNYNTITYEDLVGTGKKKKELTDIDPEQVAEYAAEDADVT 495

Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++                  E  L  +   +   G  +DV     L +  D E   L
Sbjct: 496 FRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHL 555

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275
           + E+     G   +    ++L+  LF +  L +   T+   +T   VL       P   +
Sbjct: 556 ESEIHRQAGGP-FNIASTKELQKILFDDLKLRIVKKTQTGFSTDHEVLEELAGEHPIIEK 614

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           + + R + ++     ++ L + +N   GR+  +     A+ TGR S      QN+P   R
Sbjct: 615 LLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIRDR 672

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMA 393
                                        +R          +++  D + IE R++A ++
Sbjct: 673 EGR-------------------------LLRKGFTVDSNDYEILSLDYSQIELRIMAHIS 707

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L+A+  G D++  T A  + V    VT + R   KV+  ++ Y            
Sbjct: 708 KDPAMLEAYNHGLDIHKRTAAALYGVPEIDVTHEMRDKAKVVNFSVIYGVTP-----YGL 762

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
           +  L +              ++   +++   M E   ++       G             
Sbjct: 763 SRNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRP--------- 813

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                   N  H++ ++  +        +     ++                  +    +
Sbjct: 814 ----VTDINSTHKSAKEAAKRIAINSPIQGTSADMI-----------------KIAMIKI 852

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
             +    +  +R                            ++        +V  VH    
Sbjct: 853 HEDIEKKHYKSRM---------------------------LLQVHDE---LVFEVH---- 878

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  +   + +   M +  S    LP+  EG     +
Sbjct: 879 ---KKEKDDFKASMKKHMETAMS--LDLPIVVEGKFGVNW 913


>gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
 gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946]
          Length = 846

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 105/657 (15%), Positives = 192/657 (29%), Gaps = 158/657 (24%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             +   A  +D   V        P   + LK   E + +      +  +  VL     LD
Sbjct: 333 AKLTGLAAAWD-GKVY-----RGPTDLEELKGFHELSALA-----AK-DLAVLAGKEGLD 380

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           IP       ++LA      ++               E    +          + +     
Sbjct: 381 IPPG--DDPMLLAYLYDPANS---------------EPASTVRRYGAGDLVADPVSHAQA 423

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
                 W       +GD      ++         E+ L  +   +  RG  +DV     L
Sbjct: 424 AW--LLWETLSARTQGD----ERLWWLYR---EVEKPLAAVLAQMECRGVALDVPYLQEL 474

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRV 262
           ++ +  E   L+ E+  L      +    ++L+  L+ E GL            +T   V
Sbjct: 475 SEELGKELGYLEAEIHRLAGHP-FNVNSRDQLEAILYDELGLQAGGKKTTTGKRSTAASV 533

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSG 321
           L   + L P   ++ + R   ++     L+ L + ++   GRL        A+ TGR S 
Sbjct: 534 LEEMRSLHPIVGKILDYR-ELAKLKGTYLDPLPKLIHPKTGRLHTRFNQTVAA-TGRLSS 591

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+P  +    +                         +R   +A +G  LVVAD 
Sbjct: 592 SDPNLQNIPVRTEVGRK-------------------------IRKAFVAEKGYCLVVADY 626

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA ++G++   K F    D++  T A  F + P +V    R   K +      
Sbjct: 627 SQIELRILAHLSGDENLKKVFTERRDIHTQTAAWMFGLEPEKVDPQHRRAAKTIN----- 681

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         G++                                  + E      
Sbjct: 682 ---------FGVLYGMS------------------------------AHRLSGELGISYA 702

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                 + +   + +V      + +   +  E G                          
Sbjct: 703 EASGFIERYFASYPKVRLW---IEKTLAEGRERGYVETM--------------------- 738

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--- 618
              GR     D+ +             R            VQ  + D++   M+      
Sbjct: 739 --FGRRRFVADLESKN---RAIKEAAERMAFNMP------VQGTAADLMKLAMVKLYPKL 787

Query: 619 -KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
            + G  +VL VHDE+V E P+      + +   +M +   W   +PL+        +
Sbjct: 788 KERGAHLVLQVHDELVVEAPEPLAKEVAEVMCEVMQNV--WELDVPLEVGVGIGHNW 842


>gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521]
 gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 956

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 98/631 (15%), Positives = 192/631 (30%), Gaps = 141/631 (22%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            ++LK  +EN  V  V H+     T L    N+ +       T + A       +   + 
Sbjct: 452 IELLKNVMENDKVKKVIHDGKNLVTFLNKN-NITVKEFD-FDTAIAAYLLDSAQSKYNLT 509

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E ++    K  +G            +E +     P      +   E  K D     +++ 
Sbjct: 510 ELIEKYLNKEIDG--------IESENEGILGSYIPKLYMILKSNIEKEKMD-----KLYY 556

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E  L ++  ++   G+ ++ ++   L    D E  +  +E+  L      + 
Sbjct: 557 ------EVEHPLIFVLSSMESIGFNINQSMLDELKIKFDSEIQRTQKEIYEL-ADEEFNV 609

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF +  L +   T+   +T Q VL           ++   R   ++ +   
Sbjct: 610 SSPKQLGKILFEKLDLPIIKKTKTGYSTNQEVLEKLLDKHEIIPKIMYYRQ-ITKISSTY 668

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L   ++ DGR+         + TGR S      QN+P       E            
Sbjct: 669 VEGLKNVIDEDGRIHSNFNQTVTT-TGRLSSTDPNLQNIPIRHELGRE------------ 715

Query: 351 TSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   I   EG  LV  D + IE RVLA +AG++  + AF+   D++
Sbjct: 716 -------------IRKVFIPLQEGDTLVSCDYSQIELRVLAHIAGDENMIDAFKHHSDIH 762

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T +  F V    VT   R+  K +   +                G++  + +  +K  
Sbjct: 763 TKTASEVFKVPVEDVTSLMRSRAKAVNFGIV--------------YGISAFSLSQDLKIP 808

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
            A                                +     + +++ ++      L     
Sbjct: 809 KA------------------------------EAQEYMNIYFERYPKIKSY---LENIVS 835

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +  E G  +                           R     ++  +   +        R
Sbjct: 836 EAEEKGYVLTILN-----------------------RRRFIPEINASNKIVKAL---GER 869

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+N        K    ++L VHDE++    + +   
Sbjct: 870 LAMNAP------IQGSAADIIKIAMINVYNKLKESKMQSKLILQVHDELILNVKENEFEE 923

Query: 644 ASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
              +    M +    + G  L  +    K +
Sbjct: 924 VKKIVVDEMENAIKLSVG--LDVDINSGKTW 952


>gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
 gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active
           Site, In The Closed Conformation
          Length = 580

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 87/668 (13%), Positives = 180/668 (26%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 32  HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 86  WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +    +   T+     
Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPATKKVHTIFNQAL 314

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 410 KAVNY--------------GIVYGISDYGLAQ---------------------------- 427

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 569 DYHYGSTW 576


>gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975]
          Length = 835

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 89/629 (14%), Positives = 174/629 (27%), Gaps = 148/629 (23%)

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALKAVGEALKL 118
           ++D     H +     +L       I +      T + A          AL  V +    
Sbjct: 332 SSDAPKYLHEAKAAWHMLA---GRGIELRGIAHDTALAAYLLRPGQRTYALTDVSQRHL- 387

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA--WRLFGEYCKGDVTVTREIFKRLE 176
                             +              E       G   +    +T ++ +   
Sbjct: 388 ------------------QKSLGAATEQLSILDENPLVDQAGAIMELAAELTAQLQEIDS 429

Query: 177 PLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                + EL    +   +   G  VD  +  T       +  + ++    L      +  
Sbjct: 430 FELYTDLELPLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLN 489

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI-QVFNNRMRASRSAVLK 290
             ++L+  LF    +     T+   +T  + +       P              +     
Sbjct: 490 SPKQLQAVLFDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTT- 548

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L++ +  DGR+  T      + TGR S      QN+P  + +               
Sbjct: 549 LEGLIKTIQPDGRIHTTFNQ-TVTSTGRLSSTEPNLQNIPVRTEAGR------------- 594

Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG   L+ AD + IE RV+A ++ +   ++A+  GEDL+
Sbjct: 595 ------------QIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLH 642

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
               ++ F+V   +VT + R   K M   L                GL+    +      
Sbjct: 643 NYVGSKVFDVPVDEVTPELRRRVKAMSYGLV--------------YGLSAFGLSQQ---- 684

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                             + + +++ ++   V      L +   
Sbjct: 685 --------------------------LGIPAREAKEIMESYFERFGGVKRY---LDEVVV 715

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           Q  ++G                             GR     ++ ++            R
Sbjct: 716 QARKDGYTSTV-----------------------FGRRRYLPELNSDN---RVARENAER 749

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNAS 645
                       +Q  + DI+   M+   KA       ++L VHDE+V E    +  +  
Sbjct: 750 AALNAP------IQGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQ 803

Query: 646 MLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
            +    M         +PL+      K +
Sbjct: 804 RILEREMDKAIE--LTVPLEVSVGVGKNW 830


>gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
 gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
 gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1]
          Length = 887

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/676 (14%), Positives = 205/676 (30%), Gaps = 140/676 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73
           L   G   +      + F+    D          D  + +   +K  LE+  +     N 
Sbjct: 330 LEMLGANYHLAPF--VGFSLKITDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 380

Query: 74  YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            F+     V     ++      +   L+ +      +    +GE   L        K  +
Sbjct: 381 -FDLKRTMVAAHRLDIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 436

Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
             + KG++     D ++  +  A +    E  K  +    +  ++ +   + E     + 
Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKDHEQDDLFETIEIPTARVL 496

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V+ +    L     V+  +L+ ++ S       +    ++L   LF + GL
Sbjct: 497 ARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAG-EKFNLNSPKQLGHILFEKLGL 555

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+   +T   VL   K  +P   ++ + R   ++     +  L++ + SDGR+  
Sbjct: 556 PPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQSDGRVHT 614

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P  +   +                          +R 
Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             +       +   D + +E RVLA ++G+Q   +AF+TG D++  T  + F++  P +V
Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEV 708

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R   K +                    G++    +                     
Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++ ++ E  ++  Q   +              
Sbjct: 735 ----------NLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTARE-------------- 770

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R     D+   +    T      R            +Q 
Sbjct: 771 ------------KGYAETIMHRRRYLPDIHAKKF---TVRSFAERTAINSP------IQG 809

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+   M+N  K          IV+ VHDE++ + P  +      +   +M S    
Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868

Query: 658 AKGLPLKAEGYESKRY 673
              +PL A+      +
Sbjct: 869 -LDVPLIADSGWGHNW 883


>gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
 gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
          Length = 887

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/676 (14%), Positives = 205/676 (30%), Gaps = 140/676 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73
           L   G   +      + F+    D          D  + +   +K  LE+  +     N 
Sbjct: 330 LEMLGANYHLAPF--VGFSLKITDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV 380

Query: 74  YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            F+     V     ++      +   L+ +      +    +GE   L        K  +
Sbjct: 381 -FDLKRTMVAAHRLDIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDL 436

Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
             + KG++     D ++  +  A +    E  K  +    +  ++ +   + E     + 
Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKDHEQDDLFETIEIPTARVL 496

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V+ +    L     V+  +L+ ++ S       +    ++L   LF + GL
Sbjct: 497 ARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAG-EKFNLNSPKQLGHILFEKLGL 555

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+   +T   VL   K  +P   ++ + R   ++     +  L++ + SDGR+  
Sbjct: 556 PPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQSDGRVHT 614

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P  +   +                          +R 
Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             +       +   D + +E RVLA ++G+Q   +AF+TG D++  T  + F++  P +V
Sbjct: 649 AFVPSEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEV 708

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R   K +                    G++    +                     
Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++ ++ E  ++  Q   +              
Sbjct: 735 ----------NLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTARE-------------- 770

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R     D+   +    T      R            +Q 
Sbjct: 771 ------------KGYAETIMHRRRYLPDIHAKKF---TVRSFAERTAINSP------IQG 809

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+   M+N  K          IV+ VHDE++ + P  +      +   +M S    
Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868

Query: 658 AKGLPLKAEGYESKRY 673
              +PL A+      +
Sbjct: 869 -LDVPLIADSGWGHNW 883


>gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
 gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From
           Bacillus Stearothermophilus F710y Mutant Bound To G:t
           Mismatch
          Length = 580

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 87/668 (13%), Positives = 180/668 (26%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 32  HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 86  WKGIELXGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +    +   T+     
Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPATKKVHTIFNQAL 314

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 410 KAVNY--------------GIVYGISDYGLAQ---------------------------- 427

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 569 DYHYGSTW 576


>gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10]
          Length = 887

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 98/676 (14%), Positives = 207/676 (30%), Gaps = 140/676 (20%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73
           L   G   +  D   + F+   +D          D  + +   +K  LE+  +     N 
Sbjct: 330 LEMLGANYHLADF--VGFSLKINDK----IYVSRDVDLLEEDNIKHILEDEKIKK---NV 380

Query: 74  YFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
            F+     V      +      +   L+ +      +    +GE   L        K  +
Sbjct: 381 -FDLKRSMVGAHRLGIHTHGLDY-DMLLASYLVNNENNSNDLGEIAHL--YGDYSVKTDL 436

Query: 131 ARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
             + KG++     D ++  +  A +    E  K  +    +  ++ +   + E     + 
Sbjct: 437 EVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLKDHEQDDLFDTIEIPTARVL 496

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V+ +    L     V+   L++++         +    ++L   LF + GL
Sbjct: 497 AKMEINGMKVEASTLIQLQNEFAVKLQDLEKKIYQQAG-EEFNLNSPKQLGHILFEKLGL 555

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   T+   +T   VL   K  +P   ++ + R   ++     +  L++ +  DGR+  
Sbjct: 556 PVLKKTKTGYSTSVEVLDQLKTQSPIVKEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHT 614

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P  +   +                          +R 
Sbjct: 615 RYLQ-TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRK 648

Query: 367 CVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             +       +   D + +E RVLA ++G+    +AF+TG D++  T  + F++  P +V
Sbjct: 649 AFVPSDPDGYIFSCDYSQVELRVLAHVSGDVHMQEAFKTGYDIHSHTAMKIFHLDSPDKV 708

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T   R   K +                    G++    +                     
Sbjct: 709 TPLMRRHAKAVNF--------------GIVYGISDYGLSK-------------------- 734

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++ ++ +      +A ++  E G A       
Sbjct: 735 ----------NLGISRKQAKEFIDNYFEQYPQIKDYM---DKAVQEAREKGYAETIMH-- 779

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R     D+   +    T      R            +Q 
Sbjct: 780 ---------------------RRRYLPDIHAKK---YTVRAFAERTAINSP------IQG 809

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
            + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M S    
Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK- 868

Query: 658 AKGLPLKAEGYESKRY 673
              +PL A+      +
Sbjct: 869 -LDVPLIADSGWGHNW 883


>gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0
           Position)
 gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position)
 gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form).
 gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I
           With Duplex Dna , Dctp, And Zinc (Closed Form)
          Length = 580

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 87/668 (13%), Positives = 180/668 (26%), Gaps = 143/668 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
            D  ++  A    +     +      +        L +         S F+     V   
Sbjct: 32  HDAPIVGIAVV--NEHGRFFLRPETALADPQFVAWLGDETKKK----SMFDSKRAAVALK 85

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              +++    +   L+ A        +  V  A      KM++ + +             
Sbjct: 86  WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA-----AKMKQYEAVRPDEAVYGKGA-- 137

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLS--SKEQELWYLDQTINDRG 196
             R  P+                 + R    E+ +  +       EQ L  +   +   G
Sbjct: 138 -KRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAG 196

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      + + +  +   ++Q +  L      +    ++L   LF +  L +   T+
Sbjct: 197 VKVDTKRLEQMGKELAEQLGTVEQRIYELAGQ-EFNINSPKQLGVILFEKLQLPVLKKTK 255

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL            + + R    +     +  L++ +    +   T+     
Sbjct: 256 TGYSTSADVLEKLAPYHEIVENILHYRQ-LGKLQSTYIEGLLKVVRPATKKVHTIFNQAL 314

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE- 372
           ++TGR S      QN+P       +                         +R   + SE 
Sbjct: 315 TQTGRLSSTEPNLQNIPIRLEEGRK-------------------------IRQAFVPSES 349

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              +  AD + IE RVLA +A +   ++AF    D++  T    F V+  +VT + R   
Sbjct: 350 DWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQA 409

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 410 KAVNY--------------GIVYGISDYGLAQ---------------------------- 427

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                          + + +    V           ++  + G                 
Sbjct: 428 --NLNISRKEAAEFIERYFESFPGVKRYM---ENIVQEAKQKGYVTTLLH---------- 472

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                        R     D+ +             R            +Q  + DI+ +
Sbjct: 473 -------------RRRYLPDITSRNF---NVRSFAERMAMNTP------IQGSAADIIKK 510

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M++        +    ++L VHDE++ E P  +      L   +M    +    +PLK 
Sbjct: 511 AMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKV 568

Query: 666 EGYESKRY 673
           + +    +
Sbjct: 569 DYHYGSTW 576


>gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 84/629 (13%), Positives = 184/629 (29%), Gaps = 144/629 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGE 114
           ++E L++  V        ++   +    NL+    I      ++ +       +      
Sbjct: 350 IEEILKSDTVK-----IMYDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRS------ 398

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +L +  +      I    K +    +    +                D+   + +++ 
Sbjct: 399 SYELETLFVSYLNTDIEAVKKDKKIVSVVLLKRLWDELLR-------LIDLNSCQFLYES 451

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           +E      + L  +   +   G+ VD        + ++ +  KL+ ++  +      +  
Sbjct: 452 IE------RPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAG-EWFNIN 504

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF +  L +   T+   +T   VL            + + RM  ++      
Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMY-TKILTTYC 563

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++A+N       T      + TGR +      QN+P      +              
Sbjct: 564 QGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGK-------------- 609

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +   G  L+ AD + IE R+LA ++ ++  + AF+   D++  
Sbjct: 610 -----------LIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQ 658

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V  A VT + R+  K +   +                G++             
Sbjct: 659 TAAEVFGVDIADVTPEMRSQAKAVNFGIV--------------YGISD------------ 692

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                A +              + +++ +V E  +   +     
Sbjct: 693 ------------------YGLARDIKISRKEAAEFINKYFERYPKVKEYLDNTVKFARD- 733

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                    N  ++    R    +D+ +             R  
Sbjct: 734 -------------------------NGFVLTLFNRKRYIKDIKSTN---RNLRGYAERIA 765

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q    DI+   M+   +          I+L VHDE++ E P  ++    
Sbjct: 766 MNSP------IQGSPADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVK 819

Query: 646 MLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            +    M +       +PL  E  E   +
Sbjct: 820 EIVKREMENAVR--LKVPLVVEVKEGLNW 846


>gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 889

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 102/679 (15%), Positives = 199/679 (29%), Gaps = 144/679 (21%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75
           L   G   +  D     FA           D       P  LK  LE++ V     N  F
Sbjct: 331 LAMFGDNYHLADFA--GFALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQK---NV-F 382

Query: 76  ERTVLKA----CFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           +   LK      + L I         L+ +           +GE   +      + K  +
Sbjct: 383 D---LKRTTYGLYRLGIKAESLTFDLLLASYLVDNEKNSNDLGEL--VQGYDYYDLKTDL 437

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYL 188
             + KG+  +   D     +  A +        D  + +++    +       E     +
Sbjct: 438 EVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL-KQLKDHEQDDLYDSIELPTARV 496

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V  +    L     V   +L++++         +    ++L   LF + G
Sbjct: 497 LAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAG-EEFNLNSPKQLGVILFEKLG 555

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+   +T   VL+  K+ +P    +   R   S+     +  L++ ++      
Sbjct: 556 LPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDKRDGRI 614

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T      + TGR S      QN+P  +   +                          +R
Sbjct: 615 HTRYLQTLTATGRLSSVDPNLQNIPARTEEGK-------------------------QIR 649

Query: 366 SCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422
              +    +G  +   D + IE RVLA ++ +    +AF+TG D++  T  + F+++   
Sbjct: 650 KAFVPSSPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVD 708

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT  QR   K +                    G++    +  +                
Sbjct: 709 EVTSLQRRRAKAVNF--------------GIVYGISDYGLSKNLDI-------------- 740

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                +     + +++  +        +A +   E G A     
Sbjct: 741 ----------------SRKQAKEFIDEYFEQYPGIQAYM---DRAVKDAREKGYAETIMH 781

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                  R     D+               R            +
Sbjct: 782 -----------------------RRRYLPDIHAKNF---NVRSFAERTAINSP------I 809

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           Q  + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M +  
Sbjct: 810 QGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAV 869

Query: 656 SWAKGLPLKAE-GYESKRY 673
                +PL A+ G+    Y
Sbjct: 870 K--LDVPLVADAGWGHDWY 886


>gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus]
 gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB]
          Length = 834

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 96/610 (15%), Positives = 182/610 (29%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL +   LD+        ++LA      +   + V         +    + L++   
Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAHRALLSERL 414

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                     RN     E                  ++  +E   S       +   +  
Sbjct: 415 H---------RNLLKRLEGEEKL-----------LWLYHEVEKPLS------RVLAHMEA 448

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253
            G   DVA    L+  +  E  +L++E+  L      +    ++L+  LF E  L  L  
Sbjct: 449 TGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHP-FNLNSRDQLERVLFDELRLPALGK 507

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
             +    +T   VL + ++  P   ++  +R   ++     ++ L   ++   GRL    
Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELTKLKNTYVDPLPSLVHPRTGRLHTRF 566

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 567 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 600

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A  G  LV  D + IE RVLA ++G++  ++ F+ G+D++  T +  F V P  V    
Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 661 RRAAKTVNF--------------GVLYGMS------------------------------ 676

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E            + + Q   +V      + +  E+  + G             
Sbjct: 677 AHRLSQELAIPYEEAVAFIERYFQSFPKVRAW---IEKTLEEGRKRGYVETL-------- 725

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 726 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 761

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE++ E P       + L    M      A  +PL
Sbjct: 762 LMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPL 819

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 820 EVEVGMGEDW 829


>gi|1097211|prf||2113329A DNA polymerase
          Length = 834

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 96/610 (15%), Positives = 182/610 (29%), Gaps = 149/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL +   LD+        ++LA      +   + V         +    + L++   
Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAAHRALLSERL 414

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                     RN     E                  ++  +E   S       +   +  
Sbjct: 415 H---------RNLLKRLEGEEKL-----------LWLYHEVEKPLS------RVLAHMEA 448

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LED 253
            G   DVA    L+  +  E  +L++E+  L      +    ++L+  LF E  L  L  
Sbjct: 449 TGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHP-FNLNSRDQLERVLFDELRLPALGK 507

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
             +    +T   VL + ++  P   ++  +R   ++     ++ L   ++   GRL    
Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHR-ELTKLKNTYVDPLPSLVHPRTGRLHTRF 566

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  +                          +   +R   
Sbjct: 567 NQ-TATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAF 600

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A  G  LV  D + IE RVLA ++G++  ++ F+ G+D++  T +  F V P  V    
Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 661 RRAAKTVNF--------------GVLYGMS------------------------------ 676

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E            + + Q   +V      + +  E+  + G             
Sbjct: 677 AHRLSQELAIPYEEAVAFIERYFQSFPKVRAW---IEKTLEEGRKRGYVETL-------- 725

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     D+      + +      R            VQ  + D
Sbjct: 726 ---------------FGRRRYVPDLNAR---VKSVREAAERMAFNMP------VQGTAAD 761

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
           ++   M+       + G  ++L VHDE++ E P       + L    M      A  +PL
Sbjct: 762 LMKLAMVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPL 819

Query: 664 KAEGYESKRY 673
           + E    + +
Sbjct: 820 EVEVGMGEDW 829


>gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
 gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977]
          Length = 839

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 95/610 (15%), Positives = 175/610 (28%), Gaps = 148/610 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + TV      +          L+LA      +    +      +         +   R  
Sbjct: 362 DLTVWALREGVRARPG--DDPLLLAYLYDPSNNQPASTVRRYGVG--------DWTDRAR 411

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                     R   +  E                  ++         E+ L  +   +  
Sbjct: 412 DRALAARWLWREMSDRLEGEE--------------RLWWLYR---EVERPLQGVLAAMER 454

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL----H 250
           RG  +DV     L+Q +  E  +L+ E+  L      +    ++L+T L+ E GL     
Sbjct: 455 RGVKLDVDYLLALSQELAAELERLEAEIHRLAGHP-FNLNSRDQLETVLYDELGLAAGRR 513

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTL 308
                + +T   VL + +   P   ++   R   ++     L+ L + ++   GRL    
Sbjct: 514 TAKTGKRSTSASVLETLRGAHPIVEKILQYR-ELAKLKGTYLDPLPKLVHPRTGRLHTRF 572

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
              G + TGR S      QN+P  +                              +R   
Sbjct: 573 HQTG-TATGRLSSSDPNLQNIPIRTEIGRR-------------------------IRKGF 606

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A EG  LVVAD + IE RVLA ++G++  ++ F+ G D++  T A  F V   +V   +
Sbjct: 607 VAGEGYLLVVADYSQIELRVLAHLSGDENLIRIFQEGRDIHTQTAAWMFGVEDVEVDPFR 666

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++                              
Sbjct: 667 RRAAKTIN--------------FGVLYGMS------------------------------ 682

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               + E        +     +   +  V      + +   +                  
Sbjct: 683 AHRLSRELGIDYGEAQAFIDRYFDSYPGVRAFMERVLEEARE------------------ 724

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                      +    GR     ++ +             R            VQ  + D
Sbjct: 725 --------RGYVETLFGRRRHVPELLSK---ARNVREAAERVAFNMP------VQGTAAD 767

Query: 609 ILAEGMM----NATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPL 663
           ++   M+         G  ++L VHDE+V E P+      A ++   M     W   +PL
Sbjct: 768 LIKLAMVKLAPRLEPLGAALLLQVHDELVVEAPEERAAETARVVKATMEEA--WRLDVPL 825

Query: 664 KAEGYESKRY 673
             E    + +
Sbjct: 826 AVEVGVGRDW 835


>gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
 gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50]
          Length = 878

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 111/699 (15%), Positives = 194/699 (27%), Gaps = 159/699 (22%)

Query: 8   FETRSPID---------LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PVMPQ 55
            ET   ID           K G+    +D  +   A    D  V +   ++      + +
Sbjct: 302 LETTEQIDGFFADKMKNTHKIGLYPIRKDGTLFGLAAAISDKDVFILSNLNGMEHDRLTE 361

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGLP---SAL 109
            +     +            +   LK     F  D    +     V A          + 
Sbjct: 362 NIVSVTRDG--------MQIDILDLKEALSVFPFDESDTKVHDIGVAAYLLNPMEDVYSY 413

Query: 110 KAVGEALK---LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            A+        L S+K   GK+ +  F                   A++    Y  GD+ 
Sbjct: 414 DAIARDYLGATLPSEKELVGKDELNLFSFTNETFRKLF--------AYKALIPYLAGDLL 465

Query: 167 VT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +   E  +     +  E    Y    +  RG  VD       +  +     +L  E+   
Sbjct: 466 MERLEKQEMFTLYNEIEMPTVYTLYDMEHRGIRVDRKALDDYSVKLQSRIDELHTEIIG- 524

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282
             G   +    ++L   LF + GL     T+   +T   VL   K   P    +   R  
Sbjct: 525 YAGKEFNINSPKQLGVILFEDMGLSGGKKTKTGYSTSVDVLEKIKNDHPIIPAILEYRQ- 583

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++        L   ++ DGR+ GT      + TGR S      QN+P            
Sbjct: 584 LTKLNSTYAQGLTAYISEDGRIHGTFNQ-TITATGRISSTDPNLQNIPMKLELGR----- 637

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R   I  +G   V AD + IE RVLA ++ +Q    AF
Sbjct: 638 --------------------LIRKAFIPEDGYVFVDADYSQIELRVLAHLSEDQVMQNAF 677

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
               D++ TT +  F+V   QVT  QR   K +                    G++    
Sbjct: 678 LNHVDIHATTASEVFDVPIDQVTSLQRRNAKAVNF--------------GIVYGIS---- 719

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                         + +            + +   +  +     
Sbjct: 720 --------------------------AFGLSEDLGISRKEAADYIEKYFATYKNIKSF-- 751

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            L +  E+   +G                             GR     ++ ++      
Sbjct: 752 -LDRQVEEAKADGVVRTM-----------------------FGRIRPVPELRSSNFM--- 784

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
           T     R            +Q  + DI+   M               ++L +HDE++ ET
Sbjct: 785 TRSFGERVAMNSP------IQGTAADIIKIAMFRVNMELKKRGLKSRLILQIHDELLVET 838

Query: 637 PDTDEFNASMLYHLMTSNPSWAKG--LPLKAEGYESKRY 673
              +     ++  +M      A    +PL+    E   +
Sbjct: 839 AKDE---VDIVKEIMEKEMMGAADMAVPLEIGISEGDNW 874


>gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603]
 gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603]
          Length = 876

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 100/678 (14%), Positives = 203/678 (29%), Gaps = 135/678 (19%)

Query: 14  IDLTKCGICKYAEDVC-----VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
            DL +  I    ED       ++ F     +H V + +          L   LEN +   
Sbjct: 312 NDLDEATIHFELEDSNYLKDNILKFGLYTGEHHV-VINADEIKQF-SDLVNWLENPNTAK 369

Query: 69  VAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
             +++   +   V+    ++DI   +    ++ +        +  V     +S       
Sbjct: 370 TVYDAKKTY---VVAHRLDIDIQNIQ-FDVMLSSYIIDPSRTIDDVNSV--VSLYGQHYV 423

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
           ++ +A + KG+ H    D     H  +        K ++    + + +   L+  E  L 
Sbjct: 424 QDNVAIYGKGKKHHIPEDEILNKHVASIIEAVSASKSEMQNQLKEYNQESLLADLELPLA 483

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            +   + + G   DV     + + +  +   L + +         +    ++L   LF  
Sbjct: 484 EILSEMEEIGIYTDVNDLQHMEKEIQEKLDVLIKNIHEAAG-EEFNINSPKQLGVVLFET 542

Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
             L +   T+   +T   VL   +   P    +   R   S+     +  L + ++ D R
Sbjct: 543 LELPVIKKTKTGYSTAVDVLEQLQGQHPIIDYILEYRQ-LSKLQSTYVEGLQKVISEDNR 601

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +        A +TGR S      QN+P       +                         
Sbjct: 602 IHTRFNQTLA-QTGRLSSVDPNLQNIPIRLEEGRK------------------------- 635

Query: 364 VRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R      S    ++ AD + IE RVLA +  ++   +AF  G D++  T  + F+V   
Sbjct: 636 IRKAFKPTSTDSVILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVGAD 695

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +V    R   K +   + Y            +  L +         +   + +   + + 
Sbjct: 696 EVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFIDDYLDSFPGVKQYM 750

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
             + ++       +                                             +
Sbjct: 751 SDIVKDAKAQDFVETL-----------------------------------------LHR 769

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +P +  +                        R+ +NT                   +
Sbjct: 770 RRYIPDITSRNFNLRSF---------------AERTAMNTP------------------I 796

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP 655
           Q  + DI+   M+   K          ++L VHDE++ E P  +  + S     +M S  
Sbjct: 797 QGSAADIIKLAMVQFNKEVQHTKYHAKLLLQVHDELIFEVPKDEVESFSQFVEDIMESAL 856

Query: 656 SWAKGLPLKAEGYESKRY 673
                +PLK E      +
Sbjct: 857 E--LDVPLKVESSYGATW 872


>gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7]
 gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402]
 gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7]
          Length = 870

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 96/657 (14%), Positives = 190/657 (28%), Gaps = 133/657 (20%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           ++ FA  ++D          D +     K  + +  +    ++             L+I 
Sbjct: 330 IVGFAV-YNDSEAYFI-GTEDALNCTNFKNFISDKKIEKYGYDIKKSINA-AKWHGLEIE 386

Query: 90  IHRWICTLVLARSNGLPSALK--AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
            +      + +         +  +V E  +      +E       + KG   +       
Sbjct: 387 -NYVFDLQLASYILNPSLKDEIRSVCEYYEYYDVFYDE-----EVYGKGAKKKVPETSRV 440

Query: 148 PNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
             H         Y   D  +       + E     E  +  +   +  +G  VD  +   
Sbjct: 441 AEHLIKQAKAI-YILKDQAIEKLNNENQFELYKDVEMPVAKILARMEFQGAKVDSVVLKQ 499

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
           L +    E   L++E+ +L      +    ++L   LF + GL     T+   +T   +L
Sbjct: 500 LEEQFGREINILEKEIHTL-ANREFNIASPKQLGEVLFEDLGLPNGKKTKTGYSTSVDIL 558

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
           +  K + P   +V   R   S+     +  L + +  DG++         ++TGR S   
Sbjct: 559 NKLKDIHPIIDKVLKYR-TLSKLYSTYIIGLQDQVFIDGKIHTIYNQA-LTQTGRLSSTD 616

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  +   +                          +R   +      LV  D + 
Sbjct: 617 PNLQNIPVKTPEGK-------------------------LIRKAFVPEYDY-LVSFDYSQ 650

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA +AG +  +KAF   +D++  T +  F V   QV    R   K +        
Sbjct: 651 IELRVLAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNF------ 704

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++    A  V                                     
Sbjct: 705 --------GIIYGMSDFGLAEQV------------------------------GVSVGEA 726

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
               K + + +  +    +      +   +NG                            
Sbjct: 727 REFIKRYFENYPEIKLYMDSNIDFCK---KNGYVTTMLN--------------------- 762

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617
             R    R++     Y+     +             + +Q  + DI+   M+        
Sbjct: 763 --RKRFIREINEKN-YMRQEFGK--------RLAMNSPIQGSAADIIKVAMIKVDELLKK 811

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
            +    ++L VHDE++ +    +      +    MT+       + LKAEG  +  +
Sbjct: 812 HQLKSKMILQVHDELIFDVYQEELQEVMEIVAKGMTTAIK--MDVELKAEGSYAVNW 866


>gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
 gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3]
 gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1]
          Length = 885

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 95/668 (14%), Positives = 192/668 (28%), Gaps = 159/668 (23%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEALENTDVTIVAHNSYFERT---VLKA 82
              + F+    D+        +D  +   Q L+  LE+  V     N  F+     V   
Sbjct: 339 ADFVGFSLKMGDN----VYVSNDVSLLTKQPLQTLLEDQAVNK---NV-FDLKRTIVGLH 390

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGE------ALKLSSQKMEEGKELIARFCKG 136
              +      +   L+ +      +    +GE         L       GK   A     
Sbjct: 391 RLGIKANNINY-DMLLASYLVNNENNSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDE 449

Query: 137 ET----HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
           E             +       +   E+ + D+  T E              +  +   +
Sbjct: 450 EIFFNHLAGKVLAIEALKPTLLKRLTEHEQDDLYETIE------------MPVANVLAKM 497

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G   D +    L        T+L+ ++  L  G   +    ++L   LF +  L   
Sbjct: 498 EITGLKTDASTLVQLGNDFGQRLTELEADIY-LEAGERFNINSPKQLGQILFEKLELPPI 556

Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             T+   +T   VL   K  +P   +V + R   ++     +  L++ +  DGR+    Q
Sbjct: 557 KKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQ-IAKIQSTYVKGLLDVIQPDGRVHTRYQ 615

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               + TGR S      QN+P      ++                         +R   I
Sbjct: 616 Q-TLTATGRLSSVDPNLQNIPVRLEEGKK-------------------------IRKAFI 649

Query: 370 A--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426
               +G      D + +E RVLA ++G++   +AF+TG D++  T  + F++  P +VT 
Sbjct: 650 PSNKDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTT 708

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +                    G++    +                       
Sbjct: 709 NMRRHAKAVNF--------------GIVYGISDYGLSK---------------------- 732

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                            +     + +++ ++ +  ++      +                
Sbjct: 733 --------NLGISRKQAKEFIDNYFEQYPKIKDYMDKEINFARE---------------- 768

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                        +     R     D+               R            +Q  +
Sbjct: 769 ----------KGYVETIMHRRRYLPDIHAKNF---NVRSFAERTAINSP------IQGGA 809

Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
            DI+   M+N  K          +++ VHDE++ + P  +      +   +M +      
Sbjct: 810 ADIIKIAMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQNAVH--L 867

Query: 660 GLPLKAEG 667
            +PL A+ 
Sbjct: 868 DVPLVADS 875


>gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 883

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 93/636 (14%), Positives = 192/636 (30%), Gaps = 135/636 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRW-ICTLVLARSNGLPSALK 110
           + +K  LE++ V     N  F+    +    L    I +       L+++      +   
Sbjct: 362 KQVKAILESSTVQK---NV-FDAK--RTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSN 415

Query: 111 AV---GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            V    +    ++ K +E           +           +H        +    D+  
Sbjct: 416 DVGTVAKLHGFANIKTDE----EVYGKGAKKKIDPEVPEFFDHIVHKAKAIDQLHNDMFK 471

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             +   +       E ++ ++   +   G  V+      +         +++Q +     
Sbjct: 472 ALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAG 531

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    ++L   LF +  L +   T+   +T   VL       P    V N R   S
Sbjct: 532 -EEFNIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNYRQ-IS 589

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     ++ L++ ++ +     T      ++TGR S      QN+P  S           
Sbjct: 590 KLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRSEEGR------- 642

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +R   I S E  ++  +D + IE RVLA + G++   +AF 
Sbjct: 643 ------------------LIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAFR 684

Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            GED++ TT  R F + +   VT + R   K +                    G++    
Sbjct: 685 EGEDIHATTARRIFGLASNDDVTPELRRQAKAVN--------------FGIVYGISDYGL 730

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A+                                        +  + + +++  V +   
Sbjct: 731 AN------------------------------NTGISRKQAHQFIQRYFEEYPGVKKYTE 760

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           ++ +  +                           +  +   + R     D+ +       
Sbjct: 761 DIVEFAKN--------------------------HGYVETIAHRRRYLPDIHSRNF---N 791

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPD 638
                 R            +Q  + DI+   M+N  +A       ++L VHDE++ E P+
Sbjct: 792 LRSFAERTAMNTP------IQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFEVPN 845

Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            +      L   +M S       +PLK E +  K +
Sbjct: 846 DEMETVEKLIPKVMDSAIR--LNIPLKVESHWGKTW 879


>gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
 gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479]
          Length = 598

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 89/597 (14%), Positives = 162/597 (27%), Gaps = 129/597 (21%)

Query: 92  RWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                 V                +       +     G  LI +       E    +   
Sbjct: 112 PLFDAGVAGYLLNPLKDTYDYDDLARDYLGLTVPSRAG--LIGKQSVKMALETDEKK--A 167

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAHT 206
                +  +  +   D  +T E+ +        + E+  +     +   G   +      
Sbjct: 168 FTCVCYMGYIAFMSAD-RLTEELKRTEMYSLFTDIEMPLIYSLFHMEQVGIKAERVRLKE 226

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVL 263
               + V+   L+Q++   T     +    ++L   LF    L     T++   T   VL
Sbjct: 227 YGDRLKVQIAVLEQKIYEETG-ETFNINSPKQLGEVLFDHMKLPNGKKTKSGYSTAADVL 285

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P    + + R   ++        L   +  D R+ GT      + TGR S   
Sbjct: 286 DKLAPDYPVVQMILDYRQ-LTKLNSTYAEGLAVYIGPDERIHGTFNQ-TITATGRISSTE 343

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P       E                         +R   +  +G   + AD + 
Sbjct: 344 PNLQNIPVRMELGRE-------------------------IRKIFVPEDGYVFIDADYSQ 378

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA M+G++  + A+   ED++  T +  F+    +VT  QR   K +   + Y  
Sbjct: 379 IELRVLAHMSGDERLIGAYRHAEDIHAITASEVFHTPLDEVTPLQRRNAKAVNFGIVYGI 438

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                     + GL+                                             
Sbjct: 439 S-----SFGLSEGLS---------------------------------------ISRKEA 454

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                 + + +  V E    L +      E G A+                         
Sbjct: 455 TEYINKYFETYPGVKEF---LDRLVADAKETGYAVSM----------------------- 488

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
            GR     ++ +      +      R            +Q  + DI+   M+   +A   
Sbjct: 489 FGRRRPVPELKSANFMQRSF---GERVAMNSP------IQGTAADIMKIAMIRVDRALKA 539

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 IVL VHDE++ ET   +      +L   M         + L+ E      +
Sbjct: 540 KGLKSRIVLQVHDELLIETRKDEVEAVKALLVDEMKHAAD--LSVSLEVEANVGDSW 594


>gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
 gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041]
          Length = 885

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 90/663 (13%), Positives = 191/663 (28%), Gaps = 145/663 (21%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
            F   D    L     + +    LK+ LE+  V     N+  +   L     +D+     
Sbjct: 341 GFVIGDGKTWLVSRDAELLKQDPLKKLLESPAVAKNVFNAKAQIVGLHR-LGIDLRNVD- 398

Query: 94  ICTLVLARSNGLPSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              L+ +           +G+ AL+                   E       +      +
Sbjct: 399 FDLLLASYLLNTNDNSNDLGQVALEHDYH----------EVATDEEVYGKGAKRAIPADD 448

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVA 202
             ++F  +         ++   L       Q           L  +   +   G  V+  
Sbjct: 449 --QVFYTHLAQKARAIDDLRAPLFKKLDDNQQTPLYTDIEVPLTRVLAAMEITGIKVNAQ 506

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +      ++ ++ +       +    ++L   LF +  L +   T+   +T 
Sbjct: 507 TLKDMGSKLTERLADIESQIYAAAG-EEFNINSTKQLGHILFEKLKLPVIKKTKTGYSTA 565

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL       P    +   R   ++     +  L++ ++S  +   T      ++TGR 
Sbjct: 566 VDVLEKLADQAPIVEDILQYRQ-IAKLQSTYITGLLKVIHSSDQKIHTRYLQTLTQTGRL 624

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378
           S      QN+P                                 +R   + S  G ++  
Sbjct: 625 SSVDPNLQNIPVRLPEGR-------------------------LIRKAFVPSHAGWQIFS 659

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMEL 437
           +D + +E RVLA + G++   + F+ GED++ +T  R F++    ++ ++ R   K +  
Sbjct: 660 SDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNF 719

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y               ++++         +  +E+   + +         EH   + 
Sbjct: 720 GIVYGIS-----DYGLAQRIHVSRAQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVET 774

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                                                       +RR +P ++ K     
Sbjct: 775 IT-----------------------------------------HRRRYLPDIHAKSFSRR 793

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                              R+ +NT                   +Q  + DI+   M+  
Sbjct: 794 SF---------------AERTAMNT------------------PIQGSAADIIKIAMIRM 820

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670
            +          ++L +HDE+V E P  +      L   +M S       +PLK E    
Sbjct: 821 KEEIKQRQLQARMLLQIHDELVFEAPAEEIPVLQKLVPQVMDSAVQ--LNVPLKVESKVG 878

Query: 671 KRY 673
             +
Sbjct: 879 DTW 881


>gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13]
 gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13]
          Length = 866

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 89/649 (13%), Positives = 183/649 (28%), Gaps = 144/649 (22%)

Query: 39  DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D    L    + V +    +  KE  EN  +    ++     T LK    +D        
Sbjct: 344 DEKNYLINFKELVKEEENIKSFKEFFENEAILKNGYSIKNALTALKK-LGIDFNGLA-FD 401

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
             + A            GE   LS       K    +  + +     + +      +   
Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKEGEEDLVGITFMKELTLVLKKKI 456

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              +  +    +   +                +  ++   G+ V+  +   L+     E 
Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
            +  +E+  L      +    ++L   LF +  L +   T+   +T   VL   K   P 
Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++     + S+     +  L   +++DG +  T      + TGR S      QN+P  
Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKAVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
                E                         +R   I   EG  L+ AD + IE RVLA 
Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G++  + AF    D++  T +  F V   +VT   R+  K +   +            
Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIV----------- 703

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G+   + +                               +        +     + 
Sbjct: 704 ---YGIGDFSLSQ------------------------------DLNISRKEAKEYMDIYF 730

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           +++ ++ E  +++     +    G  +                           R     
Sbjct: 731 ERYPKIKEYISKV---IHEAQTKGYVLTMLN-----------------------RRRYIP 764

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
           +   +   +        R            +Q  + DI+   M+N             ++
Sbjct: 765 EANASNKIVKAL---GERLAMNAP------IQGTAADIIKLAMVNVYNKLKELNLNSKLI 815

Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDE++      +       L   M +       +PL  +    + +
Sbjct: 816 LQVHDELIINVVKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDW 862


>gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
 gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721]
          Length = 866

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/649 (13%), Positives = 183/649 (28%), Gaps = 144/649 (22%)

Query: 39  DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D    L    + V +    +  KE  EN D+    ++     T LK    +D        
Sbjct: 344 DEKNYLINFKELVKEEENIKAFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLA-FD 401

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
             + A           +   +     K    KE      + +     + +      +   
Sbjct: 402 CELAAYLIDSSKGEYNLLSLINNYLSKFPNVKE-----GEEDLVGISFMKELTLVLKKKI 456

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              +  +    +   +                +  ++   G+ V+  +   L+     E 
Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
            +  +E+  L      +    ++L   LF +  L +   T+   +T   VL   K   P 
Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++     + S+     +  L   +++DG +  T      + TGR S      QN+P  
Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
                E                         +R   I   EG  L+ AD + IE RVLA 
Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G++  + AF    D++  T +  F V   +VT   R+  K +   +            
Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIV----------- 703

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G+   + +                               +        +     + 
Sbjct: 704 ---YGIGDFSLSQ------------------------------DLNISRKEAKEYMDIYF 730

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           +++ ++ E  +++     +    G  +                           R     
Sbjct: 731 ERYPKIKEYISKV---IHEAQTKGYVLTMLN-----------------------RRRYIP 764

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
           +   +   +        R            +Q  + DI+   M+N             ++
Sbjct: 765 EANASNKIVKAL---GERLAMNAP------IQGTAADIIKLAMVNVYNKLKELNLNSKLI 815

Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDE++      +       L   M +       +PL  +    + +
Sbjct: 816 LQVHDELIINVVKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDW 862


>gi|238853764|ref|ZP_04644130.1| DNA polymerase I [Lactobacillus gasseri 202-4]
 gi|282851273|ref|ZP_06260638.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1]
 gi|311110324|ref|ZP_07711721.1| DNA polymerase I [Lactobacillus gasseri MV-22]
 gi|238833573|gb|EEQ25844.1| DNA polymerase I [Lactobacillus gasseri 202-4]
 gi|282557241|gb|EFB62838.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1]
 gi|311065478|gb|EFQ45818.1| DNA polymerase I [Lactobacillus gasseri MV-22]
          Length = 886

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/661 (15%), Positives = 203/661 (30%), Gaps = 141/661 (21%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL--- 86
            F+    D          D V+ Q   L++ LE+  +     N  F+    +    L   
Sbjct: 344 GFSLKVSDK----IYVSKDVVLLQEAPLRQMLEDKKIKK---NV-FDIK--RTYVGLHRL 393

Query: 87  DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           DI         L+ +      +    +GE   L        K  +  + KG+      D 
Sbjct: 394 DIDAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDD--YSVKTDLEVYGKGKKQAVPEDD 451

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H  A     E  K  +    +  ++ +   + E  + ++   +   G  V+ ++ +
Sbjct: 452 EFFEHLAAKVAVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLN 511

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
            L     V+  +L+ ++         +    ++L   LF +  L     T+   +T   V
Sbjct: 512 QLGNDFAVKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLNLPPIKKTKTGYSTSVEV 570

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L   K  +P   ++ + R   ++     +  L+E +  D R+         + TGR S  
Sbjct: 571 LEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLECIQPDSRIHTRYLQ-TLTATGRLSSV 628

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVVAD 380
               QN+P  +   +                          +R   +    +G      D
Sbjct: 629 DPNLQNIPTRTDEGK-------------------------QIRKAFVPSTKDGYIF-SCD 662

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439
            + +E RVLA ++G++   +AF++G D++  T  + F++  P +VT   R   K +    
Sbjct: 663 YSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF-- 720

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++    +                                    
Sbjct: 721 ------------GIVYGISDYGLSK------------------------------NLGIS 738

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +     + +++ ++ +      +A ++  ENG A                      
Sbjct: 739 RKQAKTFIDNYFEQYPQIKDYM---DKAIKKARENGYAETIMH----------------- 778

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                 R     D+ +             R            +Q  + DI+   M+N  K
Sbjct: 779 ------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMINMQK 823

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
                     +VL VHDE++ + P  +      +   +M S       +PL A+      
Sbjct: 824 KLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWGHN 881

Query: 673 Y 673
           +
Sbjct: 882 W 882


>gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
 gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626]
          Length = 866

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 90/649 (13%), Positives = 184/649 (28%), Gaps = 144/649 (22%)

Query: 39  DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D    L    + V +    +  KE  EN D+    ++     T LK    +D        
Sbjct: 344 DEKNYLINFKELVKEEENIKSFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLA-FD 401

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
             + A            GE   LS       K    +  + +     + +      +   
Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKEGEEDLVGISFMKELTLVLKKKI 456

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              +  +    +   +                +  ++   G+ V+  +   L+     E 
Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKNILDELSIKFKREL 502

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
            +  +E+  L      +    ++L   LF +  L +   T+   +T   VL   K   P 
Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++     + S+     +  L   +++DG +  T      + TGR S      QN+P  
Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
                E                         +R   I   EG  L+ AD + IE RVLA 
Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G++  + AF    D++  T +  F V   +VT   R+  K +   +            
Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIV----------- 703

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G+   + +                               +        +     + 
Sbjct: 704 ---YGIGDFSLSQ------------------------------DLNISRKEAKEYMDIYF 730

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           +++ ++ E  +++     +    G  +                           R     
Sbjct: 731 ERYPKIKEYISKV---IHEAQTKGYVLTMLN-----------------------RRRYIP 764

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
           +   +   +        R            +Q  + DI+   M+N             ++
Sbjct: 765 EANASNKIVKAL---GERLAMNAP------IQGTAADIIKLAMVNVYNKLKELNLNSKLI 815

Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDE++      +       L   M +       +PL  +    + +
Sbjct: 816 LQVHDELIINVVKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDW 862


>gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
 gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM]
 gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796]
          Length = 886

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 101/672 (15%), Positives = 204/672 (30%), Gaps = 133/672 (19%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNS 73
           L   G   +        F+    D          D  + Q   LK+ LEN  +     + 
Sbjct: 330 LEMLGDNYHLAPFE--GFSLKVGDK----VYVSKDIALLQEKPLKDILENRKIQKDVFDL 383

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
               TV     ++ +    +   L+ +           +GE   L  +     K  +  +
Sbjct: 384 KR-MTVGLHRLDVIVEGLNY-DMLLASYLVNNEKNSNDLGEIAHLYDE--YSIKTDLEVY 439

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
            KG+      D+    H  A     E  K ++    +  ++ +   + E     +   + 
Sbjct: 440 GKGKKQAIPEDKEFFKHLAAKVCVIEKLKPELLKQLKEHEQDDLFETIEIPTARVLAKME 499

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  V+ +    L     V+  +L+ ++         +    ++L   LF +  L +  
Sbjct: 500 INGIKVEASTLIELQNEFAVKLKELEDKIYKQAG-EEFNLNSPKQLGHILFEKLNLPVLK 558

Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+   +T   VL   K  +P   ++ + R   ++     +  L++ +  DGR+      
Sbjct: 559 KTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQRDGRVHTRYLQ 617

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P  +   +                          +R   + 
Sbjct: 618 -TLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIRKAFVP 651

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQ 428
                 +   D + +E RVLA ++G+Q   +AF+TG D++  T  R F++  P +VT   
Sbjct: 652 SEPDGYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHAHTAMRIFHLDSPDEVTPLM 711

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +                    G++    +                         
Sbjct: 712 RRHAKAVNF--------------GIVYGISDYGLSK------------------------ 733

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                          +     + +++ ++ +      +A ++  E G A           
Sbjct: 734 ------NLGISRKRAKEFIDNYFEQYPQIKDYM---DKAVQEAREKGYAETIMH------ 778

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                            R     D+   +    T      R            +Q  + D
Sbjct: 779 -----------------RRRYLPDIHAKKF---TVRSFAERTAINSP------IQGSAAD 812

Query: 609 ILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL 661
           I+   M+N  K          +V+ VHDE++ + P  +      +   +M S       +
Sbjct: 813 IIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEIMQSAVK--LDV 870

Query: 662 PLKAEGYESKRY 673
           PL A+      +
Sbjct: 871 PLIADSGWGHNW 882


>gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
 gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601]
          Length = 917

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 92/700 (13%), Positives = 196/700 (28%), Gaps = 154/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             L +D ET SP                ++  +F   +         ++  +        
Sbjct: 340 RVLSVDTETTSPNP----------AMAELVGISFSNQEKTGFYVSVKNNASLFQDKSLNL 389

Query: 55  QVLKEAL---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108
             ++E L    ++ V  V  N  ++  VL+      +   +   T++ +           
Sbjct: 390 DEVREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFVLNNIQ-FDTMLASYVLRPEGRRHN 447

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  + +              L       E       + K           EY   D  VT
Sbjct: 448 MDDLAKEF------------LNYNTITYEDLVGTGKKKKELTDIDPEQVAEYAAEDADVT 495

Query: 169 REIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++                  E  L  +   +   G  +DV     L +  D E   L
Sbjct: 496 FRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHL 555

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275
           + E+     G   +    ++L+  LF    L +   T+   +T   VL       P   +
Sbjct: 556 ESEIHRQAGGP-FNIASTKELQKILFDNLKLRIVKKTQTGFSTDHEVLEELVGEHPIIEK 614

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           + + R + ++     ++ L + +N   GR+  +     A+ TGR S      QN+P   R
Sbjct: 615 LLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIRDR 672

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMA 393
                                        +R          +++  D + IE R++A ++
Sbjct: 673 EGR-------------------------LLRKGFTVDSNDYEILSLDYSQIELRIMAHIS 707

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L+A+  G D++  T A  + V    VT + R   KV+  ++ Y            
Sbjct: 708 KDPAMLEAYNHGLDIHKRTAAALYGVPETDVTHEMRDKAKVVNFSVIYGVTP-----YGL 762

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
           +  L +              ++   +++   M E   ++       G             
Sbjct: 763 SRNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRP--------- 813

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                   N  H++ ++  +        +     ++                  +    +
Sbjct: 814 ----VTDINSTHKSAKEAAKRIAINSPIQGTSADMI-----------------KIAMIKI 852

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
             +    +  +R                            ++        +V  VH    
Sbjct: 853 HEDIEKKHYKSRM---------------------------LLQVHDE---LVFEVH---- 878

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  +   + +   M +  S    LP+  EG     +
Sbjct: 879 ---KKEKDDFKASMKKHMETAMS--LDLPIVVEGKFGVNW 913


>gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 887

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/679 (15%), Positives = 199/679 (29%), Gaps = 144/679 (21%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75
           L   G   +  D     FA           D       P  LK  LE++ V     N  F
Sbjct: 329 LAMFGDNYHLADFA--GFALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQK---NV-F 380

Query: 76  ERTVLKA----CFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           +   LK      + L I         L+ +           +GE   +      + K  +
Sbjct: 381 D---LKRTTYGLYRLGIKAESLSFDLLLASYLVDNEKNSNDLGEL--VQGYDYFDLKTDL 435

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYL 188
             + KG+  +   D     +  A +        D  + +++    +       E     +
Sbjct: 436 EVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL-KQLKDHEQDDLYDSIELPTARV 494

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V  +    L     V   +L++++         +    ++L   LF + G
Sbjct: 495 LAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAG-EEFNLNSPKQLGVILFEKLG 553

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+   +T   VL+  K+ +P    +   R   S+     +  L++ ++      
Sbjct: 554 LPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDERDGRI 612

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T      + TGR S      QN+P  +   +                          +R
Sbjct: 613 HTRYLQTLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIR 647

Query: 366 SCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422
              +    +G  +   D + IE RVLA ++ +    +AF+TG D++  T  + F+++   
Sbjct: 648 KAFVPSSPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVD 706

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT  QR   K +                    G++    +  +                
Sbjct: 707 EVTSLQRRRAKAVNF--------------GIVYGISDYGLSKNLDI-------------- 738

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                +     + +++  +        +A +   E G A     
Sbjct: 739 ----------------SRKQAKEFIDEYFEQYPGIQAYM---DRAVKDAREKGYAETIMH 779

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                  R     D+               R            +
Sbjct: 780 -----------------------RRRYLPDIHAKNF---NVRSFAERTAINSP------I 807

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           Q  + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M +  
Sbjct: 808 QGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAV 867

Query: 656 SWAKGLPLKAE-GYESKRY 673
                +PL A+ G+    Y
Sbjct: 868 K--LDVPLVADAGWGHDWY 884


>gi|116630048|ref|YP_815220.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
 gi|116095630|gb|ABJ60782.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323]
          Length = 896

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/661 (15%), Positives = 203/661 (30%), Gaps = 141/661 (21%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL--- 86
            F+    D          D V+ Q   L++ LE+  +     N  F+    +    L   
Sbjct: 354 GFSLKVSDK----IYVSKDVVLLQEAPLRQMLEDKKIKK---NV-FDIK--RTYVGLHRL 403

Query: 87  DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           DI         L+ +      +    +GE   L        K  +  + KG+      D 
Sbjct: 404 DIDAEGLDYDMLLASYLVNNENNSNDLGEVAHLYDD--YSVKTDLEVYGKGKKQAVPEDD 461

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H  A     E  K  +    +  ++ +   + E  + ++   +   G  V+ ++ +
Sbjct: 462 EFFEHLAAKVAVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLN 521

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
            L     V+  +L+ ++         +    ++L   LF +  L     T+   +T   V
Sbjct: 522 QLGNDFAVKLQELEHKIYQQAG-EEFNLNSPKQLGHILFEKLNLPPIKKTKTGYSTSVEV 580

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L   K  +P   ++ + R   ++     +  L+E +  D R+         + TGR S  
Sbjct: 581 LEQLKMKSPIVSEILDYRQ-IAKIQNTYVKGLLECIQPDSRIHTRYLQ-TLTATGRLSSV 638

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVVAD 380
               QN+P  +   +                          +R   +    +G      D
Sbjct: 639 DPNLQNIPTRTDEGK-------------------------QIRKAFVPSTKDGYIF-SCD 672

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELAL 439
            + +E RVLA ++G++   +AF++G D++  T  + F++  P +VT   R   K +    
Sbjct: 673 YSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF-- 730

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++    +                                    
Sbjct: 731 ------------GIVYGISDYGLSK------------------------------NLGIS 748

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +     + +++ ++ +      +A ++  ENG A                      
Sbjct: 749 RKQAKTFIDNYFEQYPQIKDYM---DKAIKKARENGYAETIMH----------------- 788

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                 R     D+ +             R            +Q  + DI+   M+N  K
Sbjct: 789 ------RRRYLPDIHSKNF---NVRSFAERTAINSP------IQGSAADIIKIAMINMQK 833

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
                     +VL VHDE++ + P  +      +   +M S       +PL A+      
Sbjct: 834 KLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWGHN 891

Query: 673 Y 673
           +
Sbjct: 892 W 892


>gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1]
          Length = 830

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 95/609 (15%), Positives = 177/609 (29%), Gaps = 147/609 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL     + +        ++LA      +   + V                      
Sbjct: 353 DLAVLALREGIALAPG--DDPMLLAYLLDPSNTAPEGVARRYG----------------- 393

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                   +                     +     +    E     E+ L  +   +  
Sbjct: 394 ------GEWTEEAGERALLSERLYAALLERLKGEERLLWLYE---EVEKPLSRVLAHMEA 444

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V+ E  +L++E+  L      +    ++L+  LF E GL     
Sbjct: 445 TGVRLDVAYLKALSLEVEAELRRLEEEVHRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 503

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            E   + +T   VL + ++  P   ++   R   S+     ++ L   ++       T  
Sbjct: 504 TEKTGKRSTSAAVLEALREAHPIVDRILQYR-ELSKLKGTYIDPLPALVHPKTNRLHTRF 562

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
              A+ TGR S      QN+P  +                          +   +R   +
Sbjct: 563 NQTATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAFV 597

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A EG KLVV D + IE RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R
Sbjct: 598 AEEGWKLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMR 657

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +                    G++                               
Sbjct: 658 RAAKTINF--------------GVLYGMS------------------------------A 673

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              + E            + + Q + +V      + +   +  E G              
Sbjct: 674 HRLSGELAIPYEEAVAFIERYFQSYPKVRAW---IEKTLAEGRERGYVETL--------- 721

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR     D+ +    + +      R            VQ  + D+
Sbjct: 722 --------------FGRRRYVPDLASR---VKSIREAAERMAFNMP------VQGTAADL 758

Query: 610 LAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLK 664
           +   M+       + G  ++L VHDE+V E P       +      M     W   +PL+
Sbjct: 759 MKLAMVKLFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQEAKRTMEEV--WPLKVPLE 816

Query: 665 AEGYESKRY 673
            E    + +
Sbjct: 817 VEVGIGEDW 825


>gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
          Length = 883

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/636 (14%), Positives = 192/636 (30%), Gaps = 135/636 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRW-ICTLVLARSNGLPSALK 110
           + +K  LE++ V     N  F+    +    L    I +       L+++      +   
Sbjct: 362 KQVKAVLESSTVQK---NV-FDAK--RTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSN 415

Query: 111 AV---GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            V    +    ++ K +E           +           +H        +    D+  
Sbjct: 416 DVGTVAKLHGFANIKTDE----EVYGKGAKKKIDPEVPEFFDHIVHKAKAIDQLHNDMFK 471

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             +   +       E ++ ++   +   G  V+      +         +++Q +     
Sbjct: 472 ALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAG 531

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    ++L   LF +  L +   T+   +T   VL       P    V N R   S
Sbjct: 532 -EEFNIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNYRQ-IS 589

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     ++ L++ ++ +     T      ++TGR S      QN+P  S           
Sbjct: 590 KLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRSEEGR------- 642

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +R   I S E  ++  +D + IE RVLA + G++   +AF 
Sbjct: 643 ------------------LIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAFR 684

Query: 404 TGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            GED++ TT  R F + +   VT + R   K +                    G++    
Sbjct: 685 EGEDIHATTARRIFGLASNDDVTPELRRQAKAVN--------------FGIVYGISDYGL 730

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A+                                        +  + + +++  V +   
Sbjct: 731 AN------------------------------NTGISRKQAHQFIQRYFEEYPGVKKYTE 760

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           ++ +  +                           +  +   + R     D+ +       
Sbjct: 761 DIVEFAKN--------------------------HGYVETIAHRRRYLPDIHSRNF---N 791

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPD 638
                 R            +Q  + DI+   M+N  +A       ++L VHDE++ E P+
Sbjct: 792 LRSFAERTAMNTP------IQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFEVPN 845

Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            +      L   +M S       +PLK E +  K +
Sbjct: 846 DEMETVEKLIPKVMDSAIR--LNIPLKVESHWGKTW 879


>gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
 gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01]
          Length = 830

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 94/609 (15%), Positives = 177/609 (29%), Gaps = 147/609 (24%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           +  VL     + +        ++LA      +   + V                      
Sbjct: 353 DLAVLALREGIALAPG--DDPMLLAYLLDPSNTAPEGVARRYG----------------- 393

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                   +                     +     +    E     E+ L  +   +  
Sbjct: 394 ------GEWTEEAGERALLSERLYAALLERLKGEERLLWLYE---EVEKPLSRVLAHMEA 444

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V+ E  +L++E+  L      +    ++L+  LF E GL     
Sbjct: 445 TGVRLDVAYLKALSLEVEAELRRLEEEVHRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 503

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            E   + +T   VL + ++  P   ++   R   S+     ++ L   ++       T  
Sbjct: 504 TEKTGKRSTSAAVLEALREAHPIVDRILQYR-ELSKLKGTYIDPLPALVHPKTNRLHTRF 562

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
              A+ TGR S      QN+P  +                          +   +R   +
Sbjct: 563 NQTATATGRLSSSDPNLQNIPVRTP-------------------------LGQRIRRAFV 597

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A EG +LVV D + IE RVLA ++G++  ++ F+ G+D++  T +  F V P  V    R
Sbjct: 598 AEEGWRLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMR 657

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +                    G++                               
Sbjct: 658 RAAKTINF--------------GVLYGMS------------------------------A 673

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              + E            + + Q + +V      + +   +  E G              
Sbjct: 674 HRLSGELAIPYEEAVAFIERYFQSYPKVRAW---IEKTLAEGRERGYVETL--------- 721

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR     D+ +    + +      R            VQ  + D+
Sbjct: 722 --------------FGRRRYVPDLASR---VKSIREAAERMAFNMP------VQGTAADL 758

Query: 610 LAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLK 664
           +   M+       + G  ++L VHDE+V E P       +      M     W   +PL+
Sbjct: 759 MKLAMVKLFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQEAKRTMEEV--WPLKVPLE 816

Query: 665 AEGYESKRY 673
            E    + +
Sbjct: 817 VEVGIGEDW 825


>gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 887

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/679 (15%), Positives = 199/679 (29%), Gaps = 144/679 (21%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75
           L   G   +  D     FA           D       P  LK  LE++ V     N  F
Sbjct: 329 LAMFGDNYHLADFA--GFALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQK---NV-F 380

Query: 76  ERTVLKA----CFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           +   LK      + L I         L+ +           +GE   +      + K  +
Sbjct: 381 D---LKRTTYGLYRLGIKAESLTFDLLLASYLVDNEKNSNDLGEL--VQGYDYFDLKTDL 435

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYL 188
             + KG+  +   D     +  A +        D  + +++    +       E     +
Sbjct: 436 EVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL-KQLKDHEQDDLYDSIELPTARV 494

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V  +    L     V   +L++++         +    ++L   LF + G
Sbjct: 495 LAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAG-EEFNLNSPKQLGVILFEKLG 553

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+   +T   VL+  K+ +P    +   R   S+     +  L++ ++      
Sbjct: 554 LPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDERDGRI 612

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T      + TGR S      QN+P  +   +                          +R
Sbjct: 613 HTRYLQTLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIR 647

Query: 366 SCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422
              +    +G  +   D + IE RVLA ++ +    +AF+TG D++  T  + F+++   
Sbjct: 648 KAFVPSSPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVD 706

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT  QR   K +                    G++    +  +                
Sbjct: 707 EVTSLQRRRAKAVNF--------------GIVYGISDYGLSKNLDI-------------- 738

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                +     + +++  +        +A +   E G A     
Sbjct: 739 ----------------SRKQAKEFIDEYFEQYPGIQAYM---DRAVKDAREKGYAETIMH 779

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                  R     D+               R            +
Sbjct: 780 -----------------------RRRYLPDIHAKNF---NVRSFAERTAINSP------I 807

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           Q  + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M +  
Sbjct: 808 QGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAV 867

Query: 656 SWAKGLPLKAE-GYESKRY 673
                +PL A+ G+    Y
Sbjct: 868 K--LDVPLVADAGWGHDWY 884


>gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 886

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 101/678 (14%), Positives = 197/678 (29%), Gaps = 143/678 (21%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75
           L   G   +  D     FA           D       P  LKE LE++ V     N  F
Sbjct: 328 LAMFGDNYHLADFA--GFALKIGGETFVSRDVFLLQESP--LKEMLEDSAVQK---NV-F 379

Query: 76  ERTVLKA----CFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           +   LK      + L I         L+ +           +GE   +      + K  +
Sbjct: 380 D---LKRTTYGLYRLGIKAEGLSFDLLLASYLVDNEKNSNDLGEL--VQGYDYYDLKTDL 434

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYL 188
             + KG+  +   D     +  A +        D  + +++    +       E     +
Sbjct: 435 EVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL-KQLKDHEQDDLYDSIELPTARV 493

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V  +    L     V   +L++++         +    ++L   LF + G
Sbjct: 494 LAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAG-EEFNLNSPKQLGVILFEKLG 552

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+   +T   VL+  K+ +P    +   R   S+     +  L++ ++      
Sbjct: 553 LPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDERDGRI 611

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T      + TGR S      QN+P  +   +                          +R
Sbjct: 612 HTRYLQTLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIR 646

Query: 366 SCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422
              +    +G  +   D + IE RVLA ++ +    +AF+TG D++  T  + F+++   
Sbjct: 647 KAFVPSSPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVD 705

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT  QR   K +                    G++    +  +                
Sbjct: 706 EVTSLQRRRAKAVNF--------------GIVYGISDYGLSKNLDI-------------- 737

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                +     +  ++  +    +    A +   E G A     
Sbjct: 738 ----------------SRKQAKEFIDEYFDQYPGIQAYMDW---AVKDAREKGYAETIMH 778

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                  R     D+               R            +
Sbjct: 779 -----------------------RRRYLPDIHAKNF---NVRSFAERTAINSP------I 806

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           Q  + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M +  
Sbjct: 807 QGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAV 866

Query: 656 SWAKGLPLKAEGYESKRY 673
                +PL A+      +
Sbjct: 867 K--LDVPLVADASWGHDW 882


>gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
 gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940]
          Length = 863

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/631 (15%), Positives = 182/631 (28%), Gaps = 141/631 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115
           L + L N+D     H +     +L       I +      T + A               
Sbjct: 355 LAQWL-NSDAPKYFHEAKAAFHMLA---GRGIELRGIAHDTAIAAYLLRPG--------- 401

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                Q+  E  ++  R  K    +     +  +            +    +T+++    
Sbjct: 402 -----QRTYELSDVYQRHLKKTLGQASDQLSLLDDTSLVDQAAAIMELAAELTKQLQAID 456

Query: 176 EPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                 + EL    +   +   G  VDV +  T       +  + ++    L      + 
Sbjct: 457 SFELYTDLELPLVGILARMEATGIAVDVEILETQLDAFIEQVAEQERAARELAGDDSLNL 516

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAV 288
              ++L+  LF    +     T+   +T  + +         P    +  +R    +   
Sbjct: 517 NSPKQLQAVLFETFEMPKTKKTKTGYSTAAKEIEQLAVNHPHPFLDHLLAHR-EYQKMKT 575

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             L  L++ +  DGR+  T     A  TGR S      QN+P  + +             
Sbjct: 576 T-LEGLIKTVQPDGRIHTTFNQTVA-STGRLSSTEPNLQNIPVRTEAGR----------- 622

Query: 349 SITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +RS  I  EG   L+ AD + IE RV+A ++ +   ++A+  GED
Sbjct: 623 --------------QIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGED 668

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+    ++ F+V   +VT + R   K M   L                GL+    +    
Sbjct: 669 LHNYVGSKVFDVPVDEVTPELRRRVKAMSYGLV--------------YGLSAFGLSQQ-- 712

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                               + + + + ++   V      L   
Sbjct: 713 ----------------------------LGIPAREAKEIMENYFERFGGVKRY---LDNV 741

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            E+  ++G                             GR     ++ ++           
Sbjct: 742 VEKARKDGYTATV-----------------------FGRRRYLPELNSDN---RLARENA 775

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFN 643
            R            +Q  + DI+   M+    A       ++L VHDE+V E    +   
Sbjct: 776 ERAALNAP------IQGTAADIIKVAMIRVDNALRDLKSRVLLQVHDELVVEVAPGEADE 829

Query: 644 ASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
              +    M S       +PL+      K +
Sbjct: 830 VKKILEREMDSAIE--LTVPLEVSAGAGKDW 858


>gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 952

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 115/331 (34%), Positives = 168/331 (50%), Gaps = 14/331 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L ID ET S +DL K G+ KYAE  D  ++LFA+  DD  V++ D  +  ++P+ + 
Sbjct: 1   MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIPEEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  +   A N+ FER  L       +    W CT++ +   GLP +L+ VGE LKL
Sbjct: 61  SALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTREIFKR 174
             QKM EGK LI  F   CK      +  RN P+H  E W  F EY + DV    EI K+
Sbjct: 121 DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRDVETEMEIKKK 180

Query: 175 LE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L   P+   E E +++DQ INDRG  +D  L  +  +  ++ R +       LT   + +
Sbjct: 181 LSAFPMPQSEWENYWVDQNINDRGILIDEVLVDSAIKFDEILREENMDRAIELTG--LEN 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +LK WL  + GL ++ L +   + V S+ K       +V   R   S+S+V K +
Sbjct: 239 PNSPMQLKEWLNEK-GLEIDSLAK---KDVESALKNAEGDIKEVLELRQELSKSSVRKYD 294

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
            +     +D R+RG LQF GA+RTGR+    
Sbjct: 295 AMKNVKGNDKRVRGLLQFYGANRTGRYCLTG 325



 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 169/370 (45%), Gaps = 63/370 (17%)

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLP---TSITSDPDPLQIISDCVRSCVIASEGKKL 376
           SG +   QNL R +    +L + +       +       P  ++S  +R+  I  EG + 
Sbjct: 631 SGRLIQVQNLRRNNLQDLDLARSLVRNKEYESLEMLYDSPSDVLSQLIRTAFIPKEGCRF 690

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKV 434
           +V+D + IEARVLAW+AGE W L AF+ GED+Y +T ++ F V   +     D R  GKV
Sbjct: 691 IVSDFSAIEARVLAWLAGEDWVLNAFKNGEDIYCSTASQMFGVPVVKHGVNGDLRQKGKV 750

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
             LA GY G   A + M +                                         
Sbjct: 751 ATLACGYGGSVGALKAMGAI---------------------------------------- 770

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
           E        + +  +WR+ +  +  LW ++    ++ ++         + +   + +  +
Sbjct: 771 EMGLSEDELQSIVDSWREANPNIVSLWWDIDSVVKRVVKTRS------KEEYKNLVISYE 824

Query: 555 KNNLILMLPSGRSLVYRD--VGNNRSYLNTT-------TRQLTREYTYGGKLTENIVQAV 605
           K  L + LPS R L Y    +G NR    +          +  +  +YGGK  ENIVQA+
Sbjct: 825 KGILFIELPSKRRLAYPKAKIGMNRFGGESIVYEGIVVGNKWDKIESYGGKFVENIVQAI 884

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           +RDILAE MM   K G++IV+ +HDE+V E   +D  +   +  +M+  PSWA GL L A
Sbjct: 885 ARDILAEAMMRLEKKGFNIVMHIHDEVVIE---SDSSSIEEINEIMSLVPSWAPGLILDA 941

Query: 666 EGYESKRYRK 675
           +G+ES+ Y+K
Sbjct: 942 DGFESEFYKK 951


>gi|258508756|ref|YP_003171507.1| DNA polymerase I [Lactobacillus rhamnosus GG]
 gi|257148683|emb|CAR87656.1| DNA polymerase I [Lactobacillus rhamnosus GG]
 gi|259650062|dbj|BAI42224.1| DNA polymerase I [Lactobacillus rhamnosus GG]
          Length = 881

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/637 (13%), Positives = 191/637 (29%), Gaps = 140/637 (21%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            + + L +++  +   +    R ++ A    L +P       L+ +           +G+
Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLKLPDIA-FDVLLASYLINPDENSNDLGK 418

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGDVTVTRE 170
                  +  +  +L               R  P  +  +  F             +T +
Sbjct: 419 I-----AEDHDYHDLPRDEDVYGKGA---KRQVPEDKLLFEQFARKSQALFALRPDLTED 470

Query: 171 IFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           + K+ +     + E+    +   +  +G  ++      +          L++++      
Sbjct: 471 LAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEAGV 530

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF +  L +   T+   +T   VL+  K  +P    + + R   ++
Sbjct: 531 K-FNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYR-GWAK 588

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                +  L++A   D ++         ++TGR S      QN+P               
Sbjct: 589 LNSTYVVGLLKAQMPDHKIHTRYLQ-TLTQTGRLSSVDPNMQNIPARDE----------- 636

Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                             +R   + S    ++  +D + IE RVL+ ++G++   +AF+ 
Sbjct: 637 ---------------GKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKH 681

Query: 405 GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           G D++  T  + F +  P +VT D R   K                      G++    A
Sbjct: 682 GVDIHANTAMKIFGLDSPDEVTPDMRRQAKATN--------------FGIVYGISDYGLA 727

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +                                     +     + +++ +V +    
Sbjct: 728 QNI------------------------------GISRKQAKAFIDGYFEQYPKVHDYM-- 755

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                ++  E+G                              R      + +        
Sbjct: 756 -ENMVKKAREDGYVETL-----------------------FHRRRYLPQIHSRNF---NL 788

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637
            +   R            +Q  + DI+   M+   KA         ++L VHDE++ E P
Sbjct: 789 RKFAERTAMNTP------IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAP 842

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             +      L   +M S  S A  +PLK E +    +
Sbjct: 843 TAEMAQLGQLVPKIMDSAVSLA--VPLKVESHYGPTW 877


>gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 886

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 101/678 (14%), Positives = 197/678 (29%), Gaps = 143/678 (21%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75
           L   G   +  D     FA           D       P  LKE LE++ V     N  F
Sbjct: 328 LAMFGDNYHLADFA--GFALKIGGETFVSRDVFLLQESP--LKEMLEDSAVQK---NV-F 379

Query: 76  ERTVLKA----CFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           +   LK      + L I         L+ +           +GE   +      + K  +
Sbjct: 380 D---LKRTTYGLYRLGIKAEGLSFDLLLASYLVDNEKNSNDLGEL--VQGYDYYDLKTDL 434

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK--EQELWYL 188
             + KG+  +   D     +  A +        D  + +++    +       E     +
Sbjct: 435 EVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL-KQLKDHEQDDLYDSIELPTARV 493

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V  +    L     V   +L++++         +    ++L   LF + G
Sbjct: 494 LAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAG-EEFNLNSPKQLGVILFEKLG 552

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+   +T   VL+  K+ +P    +   R   S+     +  L++ ++      
Sbjct: 553 LPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQ-ISKIQSTYVKGLLDVIDERDGRI 611

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T      + TGR S      QN+P  +   +                          +R
Sbjct: 612 HTRYLQTLTATGRLSSVDPNLQNIPTRTEEGK-------------------------QIR 646

Query: 366 SCVIA--SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422
              +    +G  +   D + IE RVLA ++ +    +AF+TG D++  T  + F+++   
Sbjct: 647 KAFVPSSPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVD 705

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT  QR   K +                    G++    +  +                
Sbjct: 706 EVTSLQRRRAKAVNF--------------GIVYGISDYGLSKNLDI-------------- 737

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                +     +  ++  +    +    A +   E G A     
Sbjct: 738 ----------------SRKQAKEFINEYFDQYPGIQAYMDW---AVKDAREKGYAETIMH 778

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                  R     D+               R            +
Sbjct: 779 -----------------------RRRYLPDIHAKNF---NVRSFAERTAINSP------I 806

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           Q  + DI+   M+N  K          +V+ VHDE++ + P  +      +   +M +  
Sbjct: 807 QGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAV 866

Query: 656 SWAKGLPLKAEGYESKRY 673
                +PL A+      +
Sbjct: 867 K--LDVPLVADASWGHDW 882


>gi|229552558|ref|ZP_04441283.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314110|gb|EEN80083.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 881

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 87/637 (13%), Positives = 191/637 (29%), Gaps = 140/637 (21%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            + + L +++  +   +    R ++ A    L +P       L+ +           +G+
Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLHLPDIA-FDVLLASYLINPDENSNDLGK 418

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGDVTVTRE 170
                  +  +  +L               R  P  +  +  F             +T +
Sbjct: 419 I-----AEDHDYHDLPRDEDVYGKGA---KRQVPEDKLLFEQFARKSQALFALRPDLTED 470

Query: 171 IFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           + K+ +     + E+    +   +  +G  ++      +          L++++      
Sbjct: 471 LAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEAGV 530

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF +  L +   T+   +T   VL+  K  +P    + + R   ++
Sbjct: 531 K-FNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYR-GWAK 588

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                +  L++A   D ++         ++TGR S      QN+P               
Sbjct: 589 LNSTYVVGLLKAQMPDHKIHTRYLQ-TLTQTGRLSSVDPNMQNIPARDE----------- 636

Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                             +R   + S    ++  +D + IE RVL+ ++G++   +AF+ 
Sbjct: 637 ---------------GKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKH 681

Query: 405 GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           G D++  T  + F +  P +VT D R   K                      G++    A
Sbjct: 682 GVDIHANTAMKIFGLDSPDEVTPDMRRQAKATN--------------FGIVYGISDYGLA 727

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +                                     +     + +++ +V +    
Sbjct: 728 QNI------------------------------GISRKQAKAFIDGYFEQYPKVHDYM-- 755

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                ++  E+G                              R      + +        
Sbjct: 756 -ENMVKKAREDGYVETL-----------------------FHRRRYLPQIHSRNF---NL 788

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637
            +   R            +Q  + DI+   M+   KA         ++L VHDE++ E P
Sbjct: 789 RKFAERTAMNTP------IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAP 842

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             +      L   +M S  S A  +PLK E +    +
Sbjct: 843 TAEMAQLGQLVPKIMDSAVSLA--VPLKVESHYGPTW 877


>gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925]
 gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925]
          Length = 881

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/657 (13%), Positives = 199/657 (30%), Gaps = 156/657 (23%)

Query: 38  DDHPVELWDC-----VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           ++  + + +       +     +++K+  E+ ++  ++H+      +L+     DI    
Sbjct: 356 NEEKIYVVNINKIKNENYDKYLELIKKLFEDENIKKISHDIKNIYVILRKY---DIDAKN 412

Query: 93  W-ICTLVLARSNGLPSA----LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +   T + A       +       + E L ++  + +E  ++   +C  E +E L    K
Sbjct: 413 FSFDTKIAAYLLQPSKSDYILRDIILEKLSINIHESDEESKIKETYCIKEIYEKLQKEIK 472

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
             + E       Y                        L  +  ++   G+ +D      +
Sbjct: 473 SANMEEL----FYNVE-------------------LPLVKVLASMECEGFKIDKDRLTEI 509

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
            +   V+   L++E+         + +  ++L   LF +  L +   T+   +T   VL 
Sbjct: 510 GEKFKVKIETLEKEIHE-FADEDFNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLE 568

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K   P   ++   R   ++     +  L   ++ DG++  +      + TGR S    
Sbjct: 569 KLKDSHPIISKIIEYRQ-ITKLDSTYVEGLKHVIDEDGKIHSSFNQTVTT-TGRLSSTEP 626

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383
             QN+P       E                         +R   + + E   +  AD + 
Sbjct: 627 NLQNIPIKYEMGRE-------------------------IRKVFVPNNEESVIFSADYSQ 661

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA +A ++  + AF+  +D++  T +  F V   +VT   R+  K +   +    
Sbjct: 662 IELRVLAHIANDEKLIDAFKHHKDIHTITASEVFKVHIDEVTPLMRSNAKAVNFGIV--- 718

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                                                            + +        
Sbjct: 719 -----------------------------------------YGIGAFSLSKDINVSRKEA 737

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +     +  ++  V +  +E+    EQ                          +  +   
Sbjct: 738 KEYIDTYFSRYPNVKKYIDEIISKAEQ--------------------------DGFVTTI 771

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
             R     +V +    + +      R            +Q  + D++   M++  +    
Sbjct: 772 MNRKRYIPEVQSRNKIVRS---FGERLAMNTP------IQGSAADVIKLAMVHVYEELIK 822

Query: 624 ------IVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++      +       +   M    +    +PL+A+      +
Sbjct: 823 RNLKSTLILQVHDELILNVYKDELEEVKQMVVDKMEGVMNLL--VPLEADVNVGTTW 877


>gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
 gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree]
          Length = 875

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 101/680 (14%), Positives = 203/680 (29%), Gaps = 153/680 (22%)

Query: 17  TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64
            +  +  Y E   ++LF+       +      V   D             +V KE  E+ 
Sbjct: 322 KENDLYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEIFESK 381

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  + +++   RT+L+    ++    +     + A           V +  ++SS   E
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIK-FDINLAAYLIDP------VRKEYEISSLASE 433

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
              + I R  +    + +                E    D  +   ++         EQ 
Sbjct: 434 YLFKNINREDEFLKIKEVNI------MPNLYKVLEEKIKDQDMEELLY-------KVEQP 480

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L      +   G+ VD  +   L +    E      E+ S++     +    ++L   LF
Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EEFNINSPKQLGKILF 539

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +  L +   T+   +T   VL   +   P   ++   R   ++     +  L  A++ D
Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G++         + TGR S      QN+P       E                       
Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634

Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V 
Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +VT   R+  K +   + Y              G+   + +                 
Sbjct: 693 IEEVTPLMRSNAKAVNFGIVY--------------GIGDFSLSQ---------------- 722

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                         +        ++   A+ +++  V      L    E+ +E G     
Sbjct: 723 --------------DLNITRKEAKQYIDAYLERYPNVKLY---LENIVEEAVEKGYVSTI 765

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                    R    ++V ++   +        R           
Sbjct: 766 LN-----------------------RRRYIKEVKSSNKIVKAA---GERLAMNSP----- 794

Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653
            +Q  + DI+   M+N  +          I+L VHDE++      +      L    M  
Sbjct: 795 -IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVEKEMEQ 853

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                 G  L  +      +
Sbjct: 854 VLELKVG--LDVDINIGNNW 871


>gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 921

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 91/700 (13%), Positives = 196/700 (28%), Gaps = 154/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             L +D ET SP                ++  +F   +         +   +        
Sbjct: 344 RVLSVDTETTSPNP----------AMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSL 393

Query: 55  QVLKEAL---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108
           + ++E L    ++ V  V  N  ++  VL+      +   +   T++ +           
Sbjct: 394 EEIREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFILNNIQ-FDTMLASYVIQPEGRRHN 451

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  + + L            L       +       + K           EY   D  +T
Sbjct: 452 MDVLAKDL------------LNYDTITYDDLVGTGKKKKELTDIDPEQVAEYAAEDADIT 499

Query: 169 REIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++                  E  L  +   +   G  +DV     L +  D E   L
Sbjct: 500 FRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHL 559

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQ 275
           + E+         +    ++L+  LF +  L     T    +T   VL       P   +
Sbjct: 560 ESEIHKQAG-RSFNIASTKELQKILFDDLKLKTVKKTQTGYSTDHEVLEELLGEHPIVEK 618

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           + + R + ++     ++ L + +N   GR+  +     A+ TGR S      QN+P   R
Sbjct: 619 LLDYR-KYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIRDR 676

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMA 393
                                        +R       +  +++  D + IE R++A ++
Sbjct: 677 EGR-------------------------LLRKGFTVDSDEYEILSLDYSQIELRIMAHIS 711

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L+A+  G D+++ T A  + V   +VT + R   KV+  ++ Y            
Sbjct: 712 KDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTP-----YGL 766

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
           +  L +              ++   +++   M E   ++       G     +       
Sbjct: 767 SRNLRIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRR-RLIVD----- 820

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                   N  H++ ++  +        +     ++ +     +  +     RS +    
Sbjct: 821 -------INSTHKSAKEAAKRVAINSPVQGTSADMIKIAMINIHEDIEKKHYRSRML--- 870

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                                    +        +V  VH    
Sbjct: 871 -----------------------------------------LQVHDE---LVFEVH---- 882

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  E     +   M +       LP+  EG     +
Sbjct: 883 ---KKEKEEFKISMKKHMENAMP--LDLPILVEGKFGVNW 917


>gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 928

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 82/671 (12%), Positives = 200/671 (29%), Gaps = 141/671 (21%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDP----VMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
              ++  AF   +                   Q+ KE  E+  +  V  N  ++  VLK 
Sbjct: 371 SAELVGIAFTLQEGEAYFLPFFGRKRDIIPTVQLFKEIFESDTILKVGQNLKYDINVLKK 430

Query: 83  CFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
              + +  +     L+            L  + +     + ++   +ELI          
Sbjct: 431 Y-GIRMN-YPIFDILIAHYLINPEYLHNLDFLAKTY--LNYRIINTEELIG--------- 477

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQ 190
              +      +    L  +Y   +  +  ++    EP+             E  L ++  
Sbjct: 478 SKKESQLSVRQVPLSLLADYACENADIVLKLKNIFEPIIRKSNFSNLFYRIELPLVFVLS 537

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL- 249
            + + G  +D++     + +++     +++ +  ++   + +    + +   LF    + 
Sbjct: 538 DMEEFGVKLDISALKDYSVVLNRYLESIEKIIFQISG-KIFNVNSPKMVGEILFDHLKII 596

Query: 250 HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
                T++    T + +L + KK  P   ++   R ++ +     ++TL   ++   +  
Sbjct: 597 ENSKKTKSGQYATSEGILENLKKKHPIVGEILKYR-KSKKLLTTYIDTLPTLVSFIDKKI 655

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T      + TGR S      QN+P   +  +E                         +R
Sbjct: 656 HTTYNQATTATGRLSSNSPNLQNIPIRDKEGKE-------------------------IR 690

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              I  +    + AD + IE R++A ++ ++  L+AF  G+D++    +  F V  A++T
Sbjct: 691 RVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLEAFRNGQDIHSAIASIIFGVPLAEIT 750

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            D R   K+    + Y               L ++ F      N     + D +N+    
Sbjct: 751 CDMRRKAKITNFGIIYGISV-----FGLAEQLQVSRFIAKELINKYFMIFPDIKNYIDRS 805

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                +    +                                             ++R 
Sbjct: 806 IAIARKDGYVETIFR-----------------------------------------RKRF 824

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG--GKLTENIVQ 603
           +P +  +                 Y +  +  + +  +   + +        +L +N +Q
Sbjct: 825 LPDINSRNSVV-----------RKYAERNSINAPIQGSAADIIKVAMNRIHRRLIDNDLQ 873

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLP 662
           +       + ++              DE+       +      +  + M         +P
Sbjct: 874 S-------KMIIQVH-----------DELNFNVFIDELDKVKQIVVYEMEHATH--LKVP 913

Query: 663 LKAEGYESKRY 673
           L       K +
Sbjct: 914 LVVNCGIGKNW 924


>gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5]
 gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5]
          Length = 871

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 79/657 (12%), Positives = 176/657 (26%), Gaps = 151/657 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--DIPI 90
            +  +    +    C  +  +  +  +  E          + F+   LK           
Sbjct: 346 VSIAYGPEQIYSILCDTNMDIEYLFGKLTEIAGSVKTF--AMFD---LKKYLPHVKAPDQ 400

Query: 91  HRWICTLVLARSNGL---PSALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +     V A            + V  E L L   +  +                   R+
Sbjct: 401 EKCFDVTVAAYLLNPLKNNYDYEDVAREQLGLMIDEKADVMTKACYEAYTAFAAVKPLRD 460

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                          K        +F         E  L +    +   G  V+      
Sbjct: 461 ---------------KMQAEGMYHLFT------DIEMPLVFTLFDMEQAGIQVEAEALKF 499

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
             + +     +L++E+  +      +    ++L   LF    L     T+   +T   VL
Sbjct: 500 YGEQLGGRIVELEKEIYEMAG-ETFNINSPKQLGVVLFDHMQLPNGKKTKTGYSTAADVL 558

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P   ++   R   ++      + L   + +DGR+ G       + TGR S   
Sbjct: 559 DKLAPDYPVVEKILEYRQ-LTKLKSTYADGLAVYIGADGRIHGKFNQ-TITATGRISSTE 616

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P                             +   +R   +  EG   + AD + 
Sbjct: 617 PNLQNIPVR-------------------------MELGRLIRKVFVPKEGYVFIDADYSQ 651

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA  +G++  ++A++   D++  T ++ F+    +VT+ QR   K +        
Sbjct: 652 IELRILAHCSGDEQLIQAYKDARDIHRMTASQVFHTPFEEVTELQRRNAKAVNF------ 705

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++    +  +                                     
Sbjct: 706 --------GIVYGISSFGLSQDLSI------------------------------TRKEA 727

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
            +  + + + +  +    ++     ++                             ++  
Sbjct: 728 AQYIENYFETYPGIKRFLDDTVAHAKE--------------------------EGYVVTL 761

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
            GR     ++ ++            R            +Q  + DI+   M+   +    
Sbjct: 762 FGRRRPVPELKSSNFMQRNF---GERVAMNAP------IQGSAADIMKIAMIGVNRELKE 812

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +      +    M         +PL  + +  + +
Sbjct: 813 KGLRSRMILQVHDELLIEAHREEIGEVQEILKRQMEQAAD--LDVPLIVDMHTGENW 867


>gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 921

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 91/700 (13%), Positives = 196/700 (28%), Gaps = 154/700 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------P 54
             L +D ET SP                ++  +F   +         +   +        
Sbjct: 344 RVLSVDTETTSPNP----------AMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSL 393

Query: 55  QVLKEAL---ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SA 108
           + ++E L    ++ V  V  N  ++  VL+      +   +   T++ +           
Sbjct: 394 EEIREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFILNNIQ-FDTMLASYVIQPEGRRHN 451

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  + + L            L       +       + K           EY   D  +T
Sbjct: 452 MDVLAKDL------------LNYDTITYDDLVGTGKKKKELTDIDPEQVAEYAAEDADIT 499

Query: 169 REIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
             +++                  E  L  +   +   G  +DV     L +  D E   L
Sbjct: 500 FRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRHL 559

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQ 275
           + E+         +    ++L+  LF +  L     T    +T   VL       P   +
Sbjct: 560 ESEIHRQAG-RSFNIASTKELQKILFDDLKLKTVKKTQTGYSTDHEVLEELLGEHPIVEK 618

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           + + R + ++     ++ L + +N   GR+  +     A+ TGR S      QN+P   R
Sbjct: 619 LLDYR-KYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIRDR 676

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMA 393
                                        +R       +  +++  D + IE R++A ++
Sbjct: 677 EGR-------------------------LLRKGFTVDSDEYEILSLDYSQIELRIMAHIS 711

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   L+A+  G D+++ T A  + V   +VT + R   KV+  ++ Y            
Sbjct: 712 KDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTP-----YGL 766

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
           +  L +              ++   +++   M E   ++       G     +       
Sbjct: 767 SRNLRIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRR-RPIVD----- 820

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                   N  H++ ++  +        +     ++ +     +  +     RS +    
Sbjct: 821 -------INSTHKSAKEAAKRVAINSPVQGTSADMIKIAMINIHEDIEKKHYRSRML--- 870

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                                    +        +V  VH    
Sbjct: 871 -----------------------------------------LQVHDE---LVFEVH---- 882

Query: 634 CETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  E     +   M +       LP+  EG     +
Sbjct: 883 ---KKEKEEFKISMKKHMENAMP--LDLPILVEGKFGVNW 917


>gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
 gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ]
          Length = 853

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 90/667 (13%), Positives = 181/667 (27%), Gaps = 155/667 (23%)

Query: 19  CGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFER 77
            G+    E   +       D+                  +   L +  V  V     ++ 
Sbjct: 324 LGLYIEVEQGFISTIFAACDETRSFTVSSPEKVQKFVAAVTPILHSDSVLKVV----YDA 379

Query: 78  TVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFC 134
             +   F     +  +   ++++ S           ++ +        +  G  LI    
Sbjct: 380 KSMMQFF---PELRAFDDIMIMSYSLDTGHHDHGFDSMSQRHLGQIFGITNGCILIRLHR 436

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                                    Y    V  T E            + L  +   +  
Sbjct: 437 VIMR--------------KLFSAKLYT---VYYTLE------------RPLVPVIYELEK 467

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +D  L   L+    +  + L++E+  L      +    ++L   LF    +     
Sbjct: 468 TGIKIDTELLKQLSDEFSLSISNLEEEIFGLAGCK-FNIASSQQLGKVLFEHMRIGGAKK 526

Query: 255 TET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
             +    T   VL++      +           ++      + LV  ++++     T   
Sbjct: 527 MPSGSYCTNAEVLTALALDGVEVADKILKWRHFTKLKSTYTDALVRQVDANTGRVHTKYS 586

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
           + A+ TGR S      QN+P  S+  E+                         +RS  IA
Sbjct: 587 MTATATGRLSSSNPNLQNIPIRSKDGEK-------------------------IRSAFIA 621

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            +G KL+ AD + +E ++LA +A  +   +AF  G D++V T  + F     ++  + R 
Sbjct: 622 EKGHKLIAADYSQMELKILAHIADVKAFRQAFAEGLDIHVVTAQQIFG-EYYEIDYELRR 680

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K                      G+                                 
Sbjct: 681 RAKS--------------INFGIIYGMG------------------------------SY 696

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
             A              + + Q +  +           +   ++G  I A          
Sbjct: 697 GLARNIGISRREASEYVEQYFQYYPEIKRYMETTKAYAK---KHGYTITA---------- 743

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                         GR      + + +      +    R            +Q  + DI+
Sbjct: 744 -------------FGRKCFIEGINSPK---RALSSVAERAAINAP------IQGTAADIV 781

Query: 611 AEGMMNATKAGYD--IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEG 667
            + M+          ++L VHDE++ E P+    + + L   +M S   +   LPL    
Sbjct: 782 KKAMVRLQDRLTQGTMLLQVHDELLVEVPEEHVLSVARLMKEVMESAVVF--SLPLDVNI 839

Query: 668 YESKRYR 674
                + 
Sbjct: 840 SVGDNWG 846


>gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
 gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC
           15579]
          Length = 875

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 104/681 (15%), Positives = 206/681 (30%), Gaps = 155/681 (22%)

Query: 17  TKCGICKYAEDVCVILFA--------FGFDDHPVELWDCVH-----DPVMPQVLKEALEN 63
            +  +  Y E   ++LF+          F D  V   D             +V KE  E+
Sbjct: 322 KENKLYLYFELEDIVLFSKSRIKILYVSFKD-EVYRIDFETLLKNTKEEFIEVCKEIFES 380

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            ++  + ++S   RTVL+    ++          + A           V +  ++SS   
Sbjct: 381 KEIKKITYDSKNPRTVLRK-LGMEFNGIN-FDINLAAYLIDP------VRKEYEISSLAS 432

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           E   + I R  +    + +                E    D  +   ++K  +PL+    
Sbjct: 433 EYLFKNINREDEDLKIKEVNI------MPKLYKVLEEKIKDQDIEELLYKIEQPLTET-- 484

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
                   +   G+ VD  +   L +    E      E+ S++     +    ++L   L
Sbjct: 485 -----LSAMETEGFKVDKNILLQLEKKFKGEIESTQSEIYSMSE-EEFNINSPKQLGKIL 538

Query: 244 FLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           F +  L +   T+   +T   VL   +   P   ++   R   ++     +  L  A++ 
Sbjct: 539 FEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDE 597

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DG++         + TGR S      QN+P       E                      
Sbjct: 598 DGKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE---------------------- 634

Query: 361 SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   I  +E   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V
Sbjct: 635 ---IRKVFIPNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEHDDIHTKTASEVFKV 691

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              +VT   R+  K +   + Y              G+   + +                
Sbjct: 692 PIDEVTPLMRSNAKAVNFGIVY--------------GIGDFSLSQ--------------- 722

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                          +        ++   A+ +++  V      L    E+ I+ G    
Sbjct: 723 ---------------DLNITRKEAKQYIDAYLERYPNVKIY---LENIVEEAIQKGYVTT 764

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                                     R    ++V ++   +        R          
Sbjct: 765 ILN-----------------------RRRYIKEVKSSNKIVKAA---GERLAMNSP---- 794

Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMT 652
             +Q  + DI+   M+N  +          I+L VHDE++      +      ++   M 
Sbjct: 795 --IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKREME 852

Query: 653 SNPSWAKGLPLKAEGYESKRY 673
                  G  L  +      +
Sbjct: 853 QVLELKVG--LDVDINIGNNW 871


>gi|199599523|ref|ZP_03212912.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus rhamnosus HN001]
 gi|199589592|gb|EDY97709.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Lactobacillus rhamnosus HN001]
          Length = 881

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 86/637 (13%), Positives = 190/637 (29%), Gaps = 140/637 (21%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            + + L +++  +   +    R ++ A    L +P       L+ +           +G+
Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLHLPDIA-FDVLLASYLINPDENSNDLGK 418

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGDVTVTRE 170
                  +  +  +L               R  P  +  +  F             +T +
Sbjct: 419 I-----AEDHDYHDLPRDEDVYGKGA---KRQVPEDKLLFEQFARKSQALFALRPDLTED 470

Query: 171 IFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           + K+ +     + E+    +   +  +G  ++      +          L++++      
Sbjct: 471 LAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKNMGTEFSQSIKVLEEKIYGEAGV 530

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF +  L +   T+   +T   VL+  K  +P    + + R   ++
Sbjct: 531 K-FNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYR-GWAK 588

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                +  L++A   D ++         ++TGR S      QN+P               
Sbjct: 589 LNSTYVVGLLKAQMPDHKIHTRYLQ-TLTQTGRLSSVDPNMQNIPARDE----------- 636

Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                             +R   + S    ++  +D + IE RVL+ ++G++   +AF+ 
Sbjct: 637 ---------------GKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKH 681

Query: 405 GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           G D++  T  + F +  P +VT D R   K                      G++    A
Sbjct: 682 GVDIHANTAMKIFGLDSPDEVTPDMRRQAKATN--------------FGIVYGISDYGLA 727

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +                                     +     + +++ +V +    
Sbjct: 728 QNI------------------------------GISRKKAKAFIDGYFEQYPKVHDYM-- 755

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                ++  E+G                              R      + +        
Sbjct: 756 -ENMVKKAREDGYVETL-----------------------FHRRRYLPQIHSRNF---NL 788

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637
            +   R            +Q  + DI+   M+   KA         ++L VHDE++ E P
Sbjct: 789 RKFAERTAMNTP------IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAP 842

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             +      L   +M S  S    +PLK E +    +
Sbjct: 843 TAEMAQLGQLVPKIMDSAVSLV--VPLKVESHYGPTW 877


>gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152]
 gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152]
          Length = 910

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 98/667 (14%), Positives = 193/667 (28%), Gaps = 140/667 (20%)

Query: 28  VCVILFAFGFDDHPVELWDCV-HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
             V   A    D      D     P     L   L +  V    H +      L      
Sbjct: 358 GDVQALAIAAADGESGYIDVTVLTPEDEAALAAWLADPAVPKALHEAKSAMHAL-RGRGW 416

Query: 87  DIPIHRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKE----LIARFCKGETH 139
            +       T + A           L  +         + E        L+      +  
Sbjct: 417 TL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRYLHRELRAETDDNAQLSLLDDEDAVDAE 475

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
               +  +           +     +  T  +     PL         +  T+ + G  V
Sbjct: 476 TARAEMLRARAVLDLAAALDAELEQIESTALLTDMELPLLG-------VLATLEEAGIAV 528

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257
           D      L +    +  +  +    +    + +    ++L+  LF E  +     T+T  
Sbjct: 529 DCEQLEALQRQFADKVAQAAEAAYGVIGKQI-NLGSPKQLQVVLFDELDMPKTKRTKTGY 587

Query: 258 -TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
            T    L S   K   P    +  +R  A+R  V  ++ L++++  DGR+  T     A+
Sbjct: 588 TTDADALESLFEKTQHPFLEHLLAHR-DATRLKVT-VDGLLKSVADDGRIHTTFNQTIAA 645

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S      QN+P  + +                            +R   +   G 
Sbjct: 646 -TGRLSSTEPNLQNIPIRTDTGR-------------------------MIRDTFVVGPGY 679

Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            +L+ AD + IE R++A ++G++  ++AF +GEDL+    +++F++  A+V+ + R   K
Sbjct: 680 AELMTADYSQIEMRIMAHLSGDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIK 739

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            M   L Y            + GL+                                   
Sbjct: 740 AMSYGLAYGLS---------SYGLSAQ--------------------------------- 757

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                     +     +  +  R+ +   E+ +   +                       
Sbjct: 758 --LKISTAEAKEQMDIYFSRFGRIRDYLYEVVEQARK----------------------- 792

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                      GR     D+ ++            R            +Q  + DI+   
Sbjct: 793 ---VGYTETLFGRRRYLPDLDSSN---RQRREAAERMALNAP------IQGTAADIIKVA 840

Query: 614 MMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           M++  +          ++L +HDE+V E  + +      L    M++    A  +PL   
Sbjct: 841 MIDVHRGIREAGLRSRMLLQIHDELVFEVAEGERDALEQLAREKMSAAI--ALSVPLDVS 898

Query: 667 GYESKRY 673
               + +
Sbjct: 899 VGTGRSW 905


>gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
 gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725]
          Length = 882

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 92/631 (14%), Positives = 185/631 (29%), Gaps = 137/631 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
           +VL + LE+       H +     +L       I +      T + A           + 
Sbjct: 372 KVLVQWLESPA-PKYFHAAKAAFHMLA---GRGIELDGLAHDTALAAYILRPGQRTYELS 427

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +  +         K L A   +    +     ++                D+    E++ 
Sbjct: 428 DVYQ-----RHLQKSLGAATEQMSLLDSSSLVDQAAAIMELAEKLTAELQDIDS-FELYT 481

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E  L  +   +   G  VDV +  T       +  + ++    L      + 
Sbjct: 482 ------DLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQERSARELAGDEKLNL 535

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAV 288
              ++L+  LF    +     T+   +T  + +         P    +  +R    +   
Sbjct: 536 NSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFLDHLLAHR-EYQKMKT 594

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             L  L++ +  DGR+  T      + TGR S      QN+P  + +             
Sbjct: 595 T-LEGLIKTVQPDGRIHTTFNQ-TVTSTGRLSSTEPNLQNIPVRTEAGR----------- 641

Query: 349 SITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +RS  I  EG  +L+ AD + IE RV+A ++ +   ++A++ GED
Sbjct: 642 --------------QIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGED 687

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+    +R F+V   QVT + R   K M   L                GL+    +    
Sbjct: 688 LHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLV--------------YGLSAFGLSQQ-- 731

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                               + + +++ ++   V +  +++ + 
Sbjct: 732 ----------------------------LGIPAGEAKSIMESYFERFGGVKKYLDDVVEQ 763

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +                          +       GR     ++ ++           
Sbjct: 764 ARK--------------------------DGYTATLFGRRRYLPELNSDN---RLARENA 794

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFN 643
            R            +Q  + DI+   M+   +A       ++L VHDE+V E    +   
Sbjct: 795 ERAALNAP------IQGTAADIIKVAMIRVDRALRDMKSRVLLQVHDELVVEVAPGEADQ 848

Query: 644 ASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
              +    M S       +PL+        +
Sbjct: 849 VREILEREMDSAIE--LNVPLEVSAGAGTDW 877


>gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B]
 gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B]
          Length = 862

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 96/640 (15%), Positives = 188/640 (29%), Gaps = 153/640 (23%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---G 104
            ++    + LK+  ENT    + HN+    TVL    ++DI  +    T + A       
Sbjct: 358 ENEEKSKEYLKKLFENTS-EKIIHNAKNLFTVLSK-LDIDIN-NFVFDTEIAAYLIESSD 414

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
               LK + E     + +    +  I+             +        ++         
Sbjct: 415 KEYTLKTLFETYLHETYQDISQE--ISNLSNLYQRLKEKIKELQMEDLLYK--------- 463

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                            E  L  +   +   G+ VD      L +    E T   +E+  
Sbjct: 464 ----------------IELPLVKVLADMEKVGFKVDREQLDQLREKFINEITVSQKEIYE 507

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
           +      +    ++L   LF +  L +   T+   +T   VL   K   P   ++   R 
Sbjct: 508 MAG-EEFNISSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIDKITYYRQ 566

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++     +  L+  ++ DGR+  +      + TGR S      QN+P           
Sbjct: 567 -LTKLNSTYVEGLIHVIDQDGRIHSSFNQTVTT-TGRLSSTEPNLQNIPIKYEMGRA--- 621

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +R   +   E   ++ AD + IE RVLA MA ++    
Sbjct: 622 ----------------------IRKVFVPNDEESLILSADYSQIELRVLAHMADDENMKT 659

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           A+    D++  T +  FN+   QVTK++R+  K +   +                G++  
Sbjct: 660 AYLEHIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNFGIV--------------YGISDF 705

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +                               +        ++    +  ++ +V E 
Sbjct: 706 ALSE------------------------------DLKISKKEAKQYIDTYFSRYPKVKEY 735

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            +      E+                           L +     R     ++ ++   +
Sbjct: 736 ISSTIAKAEK--------------------------ELYVNTIFNRRRFIPEITSSNKIV 769

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
                   R            +Q  + DI+   M+N        K    ++L VHDEI+ 
Sbjct: 770 KAL---GDRLAMNAP------IQGSAADIIKLAMVNVSKRLKEEKLKSSLILQVHDEIIL 820

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                +      L    M S   +   +PL+ +      +
Sbjct: 821 NVYKDELETVKELVKKEMESVIDF--SVPLEVDINTGTTW 858


>gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
 gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1]
          Length = 933

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 111/664 (16%), Positives = 203/664 (30%), Gaps = 151/664 (22%)

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI- 94
              D  V+ W       +   +   L +  +    H    ++ V+ +  +L++ +   + 
Sbjct: 390 SLSDGAVQQW---KPSEVLAKVGPLLSDAKLPKYTHALK-DQQVVLSRADLNVEVRNVVG 445

Query: 95  CTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
            TL+ + +         L+ + + +                    E+      +     +
Sbjct: 446 DTLLASYTLDPARSDHNLEGLAKDIG------------GRLVGDRESIVGKGKKRVGFDQ 493

Query: 152 EAWRLFGEYCKGDVTVTREIFKRL------------EPLSSKEQELWYLDQTINDRGYCV 199
            A  + G +      +   +   +            +  +  E  L  +   +  RG  +
Sbjct: 494 VAVAVAGPWAGERAGLAATLGPHMVAAAKAAGEQTQKLYAEVELPLARVLARLERRGVLL 553

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256
           D A     N  +  +   L   L+      V      ++L   LF E GL  +  T+   
Sbjct: 554 DEAELQRQNDELGGQIDALKSTLQEEAGYAVD-PNSPKQLGKLLFEERGLPAKKKTKTGY 612

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASR 315
           +T  + L     L P    + + R   ++     L+TL + +N + GRL    +   A+ 
Sbjct: 613 STDAQTLEELSLLDPIVKVILDYR-SLAKLKNTYLDTLPKLVNPNTGRLHTHFRQAVAA- 670

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  +                              +R   +A EG +
Sbjct: 671 TGRLSSREPNLQNIPIRTEQGRR-------------------------IRRGFVAPEGMQ 705

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           LV  D + IE RVLA ++ +   +KAF  G D++  T A  F V  A+VT +QR +    
Sbjct: 706 LVTLDYSQIELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAEVTSEQRRVA--- 762

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                                                     A NF     ++    A +
Sbjct: 763 -----------------------------------------KAVNFGVIYGQSAFGLARQ 781

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                    +  KA+ +K   VS   N L    + T                        
Sbjct: 782 LGIPQGRAGKYIKAYFKKIPGVSSYMNALIDTAKDT------------------------ 817

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                    GR     ++    +   +   ++ R            +Q  + DIL   M+
Sbjct: 818 --GFAETIFGRRRRIPELRRRGAVARSYGERIAR---------NTPIQGSAADILKIAMV 866

Query: 616 NATKAG-----YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYE 669
              +         ++LTVHDE++ E           L    M  + S    +PL  EG  
Sbjct: 867 EVERLLDDKPWARMLLTVHDELIFECETDKVQELIGLVKPAMEKSAS--LDVPLLVEGGA 924

Query: 670 SKRY 673
              +
Sbjct: 925 GANW 928


>gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1]
 gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1]
          Length = 850

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/603 (14%), Positives = 165/603 (27%), Gaps = 141/603 (23%)

Query: 92  RWICTLVLARSNGL---PSALKAVGEALK---LSSQKMEEGKELIARFCKGETHECLY-D 144
                 +                +        + S+    GK  + R  +    + +   
Sbjct: 364 PVFDASIAGYLLNPLKDSYEYNDLAADYLDLSIPSRTELIGKSSMKRAMEENKEKAVSCI 423

Query: 145 RNKPNHR----EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
                      +  +   E    D     ++F  +E   +           + D G  V+
Sbjct: 424 CYMSYVAFRSRDLLQEALEKAGMD-----KLFYEIEMPLTYS------LYRMEDAGIRVE 472

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
             L       + V   +L+Q++   T     +    ++L   LF    +     T+   +
Sbjct: 473 RKLLKEYGDRLKVRIAELEQKIYEETG-ETFNINSPKQLGEVLFDHMKIPGGKKTKTGYS 531

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL       P    + + R   ++      + L   +  D R+ GT      + TG
Sbjct: 532 TAADVLEKLASDWPAVRLILDYRQ-LTKLNSTYADGLAAYIGPDERIHGTFNQ-TITATG 589

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P       E                         +R   +  EG   +
Sbjct: 590 RISSTEPNLQNIPVRMELGRE-------------------------IRKVFVPQEGCVFI 624

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA M+G+Q  + A++  ED++  T ++ F+V   +VT  QR   K +  
Sbjct: 625 DADYSQIELRVLAHMSGDQRLIGAYKQAEDIHAITASQVFHVPLHEVTPLQRRNAKAVNF 684

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y            + GL+                                       
Sbjct: 685 GIVYGIS-----SFGLSEGLS--------------------------------------- 700

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                     + + + +  V    + L    ++                           
Sbjct: 701 ITRKEASEYIEKYFETYPGVKTFLDGLVAEAKE--------------------------L 734

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR     ++ ++     +      R            +Q  + DI+   M+  
Sbjct: 735 GYAASMFGRRRPVPELKSSNFMQRSF---GERVAMNSP------IQGTAADIIKIAMIRV 785

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670
             A         IVL VHDE++ E    +       L   M      A    L+ E    
Sbjct: 786 DGALRKQGLRSRIVLQVHDELLIEAYREEADQVKELLAEEMKHAADLAVS--LEVEANAG 843

Query: 671 KRY 673
             +
Sbjct: 844 DSW 846


>gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
 gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109]
          Length = 896

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/720 (13%), Positives = 203/720 (28%), Gaps = 170/720 (23%)

Query: 2   ATLFID--FETRSPIDLTKCGICKYA-------------------EDVCVILFAFGFDDH 40
             + +D   E    +D  +  +   A                       +      ++++
Sbjct: 293 KEISLDNHTEDFVLLDTREALLEAVASIRAVGRLALFCHSTSQHPMLAQLKGLGLSWEEN 352

Query: 41  PVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
                   H   +  + ++L+    +  +  ++ +      +    +   + +      L
Sbjct: 353 QGAYLPFQHRLTEKDIWEILEPLWSDPGIAKISPDLKT-AMIWGERYGHPL-VGSVSDIL 410

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           + +                 +   +  E   L+       +   L  R          L 
Sbjct: 411 LASYLLNP------------VRFDQTIENVALLDLGLNLLSPRELAGRPLAASDLPLELA 458

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTL 207
             Y  G       ++ RL     +E+           +  +   +  RG  VD+      
Sbjct: 459 IGYAAGRGQAAFRLWPRLHQQLQQEKLLRLYEDLELPVLRVLAAMETRGIRVDLDFLQRF 518

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRV 262
            + V+ E   L++E+  +        +   +L   LF    L  +  T+     +T   V
Sbjct: 519 GREVEKELASLEEEIHEMAG-EPFLIQSPPQLAAILFDRLQLPTQKKTKGRTAYSTDNEV 577

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321
           L++     P A +V   R    +     ++ L + ++   GR+  T     A+ TGR S 
Sbjct: 578 LTALADYHPIAAKVIAYR-TLGKLKATYVDGLCKQVHPASGRIHTTFVQSVAA-TGRLSS 635

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+P                             +   +R   + S G   +  D 
Sbjct: 636 RDPNLQNIPVRGE-------------------------LGAQLRQAFLPSSGYIFISGDY 670

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA  + +   L+AF+ GED++  T A  F + P  V+++ R   KV+      
Sbjct: 671 SQIELRLLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHPELVSREMRRQAKVIN----- 725

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         G++                                  A +      
Sbjct: 726 ---------FGIIYGMS------------------------------AFGLAKQLNVSQR 746

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             +     +  +H+ V   +    QA +   + G                          
Sbjct: 747 LAQDFINRYFARHTGVKRYF---DQALDTARQKGWVTTLL-------------------- 783

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
              GR      + ++        ++  R            +Q  + D++ + M+    A 
Sbjct: 784 ---GRRRPIPHLHSSN---RNLRQEAERSA------LNTPLQGSAADLIKKAMLAVEAAL 831

Query: 622 Y------DIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                   ++L +HDE++ E P          L   M          PL  +    + + 
Sbjct: 832 VHEGLSGRLLLQIHDELLLEAPYQEQAATVDCLRRAMEGVAQ--LRTPLVVDIQTGENWG 889


>gi|73666681|ref|YP_302697.1| DNA polymerase I [Ehrlichia canis str. Jake]
 gi|72393822|gb|AAZ68099.1| DNA polymerase, family A [Ehrlichia canis str. Jake]
          Length = 861

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/660 (13%), Positives = 181/660 (27%), Gaps = 147/660 (22%)

Query: 21  ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80
           +     D  +   +  +        D  H     + +K       +  V     ++   L
Sbjct: 331 LHIEIVDNSIGSISLSYRKEVFFYIDKDHVDDALEFIKPIFSLGYILKVI----YDVKTL 386

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                 ++ I  +   +V++                          + +I+   +     
Sbjct: 387 LKIIP-NLDIVAFNDIMVMSYVLNPGVH--------------DHSLQNIISYNVEQSITN 431

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
                    H    +         V     +++R+E           +   +   G  V+
Sbjct: 432 MNAANLLLLHELLRKSLF------VDRLYTVYERVEKPL------IRVLDNMEKIGVLVN 479

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TE 256
           V +  TL+     +   L+ E+  L+     +    ++L   LF + G+           
Sbjct: 480 VDVLKTLSATFSEKINMLESEIYKLSG-AEFNIASSKQLGNILFDKMGIKKGKKLSSGNY 538

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VLS       +           ++      + L +  NS+     T   + ++ T
Sbjct: 539 STDAEVLSDLAFNDVEIADKILKWRHLTKLKTTYTDVLEKQKNSNSGRVHTFYSMVSTAT 598

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  S                              +R   IA +G KL
Sbjct: 599 GRLSSSNPNLQNIPVRSEEGN-------------------------SIRRAFIAKKGYKL 633

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A +A  Q    AF   +D++  T  + FN    ++ K+ R   K + 
Sbjct: 634 ISADYSQIELRIMAHIADVQAFKNAFFLNQDIHSITAKQIFNT--EKLDKNLRRRAKSIN 691

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    A  +                              
Sbjct: 692 F--------------GIIYGMSAFGLAKQLSI---------------------------- 709

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
               +        + + +  +      +    +                           
Sbjct: 710 --SRSEASTYINNYFRSYPEIQSYMENIKAYAKT-------------------------- 741

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
           +       GR    +D+ ++     T      R             Q  S DI+   M++
Sbjct: 742 HGYTRTIFGRKCFVKDINSDNV---TARNFSERAAINAPL------QGTSADIIKMSMIH 792

Query: 617 ATKA--GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                    ++L VHDE++ E  +   +    ++  +M +       +PLK +      +
Sbjct: 793 LFDKLKNGSLILQVHDELLFEILEEQVDDAVKIIREVMENIVK--LSVPLKVDFNIGDNW 850


>gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus]
          Length = 954

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 83/671 (12%), Positives = 179/671 (26%), Gaps = 147/671 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKA 82
               ++  A    +     +      V        L +           F+     V   
Sbjct: 404 HHAPIVGIALA--NERGRFFLRPETAVADPKFLAWLGDETKKKT----MFDSKRAAVALN 457

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK--LSSQKMEEGKELIARFCKGETHE 140
              +++     +          L + L    +A     +  KM + + + +         
Sbjct: 458 GKGIELAGVGVV------FDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAVYGKGA 511

Query: 141 CLYDRNKPNHREAWRLFGEYCKG----DVTVTREIFKRLEPLSSKEQELWY--LDQTIND 194
               R  P+                  +  +  E+ +  +     E E     +   +  
Sbjct: 512 ---KRTVPDEPTLAEQLVRKAAAIWALEEPLMDELRRNEQDRLLTELEHALAGILANMEF 568

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  VD      +   +  +   +++ +  L      +    ++L T LF +  L +   
Sbjct: 569 TGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQ-EFNINSPKQLGTVLFDKLQLPVLKK 627

Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQF 310
           T+   +T   VL            + + R    +     +  L++ ++   G++      
Sbjct: 628 TKTGYSTSADVLEKLAPHHEIVEHILHYRQ-LGKLQSTYIEGLLKVVHPVTGKVHTMFNQ 686

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              ++TGR S      QN+P       +                         +R   + 
Sbjct: 687 A-LTQTGRLSSVEPNLQNIPIRLEEGRK-------------------------IRQAFVP 720

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
                 +  AD + IE RVLA +A +   ++AF    D++  T    F+V+   VT + R
Sbjct: 721 SEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRWLDIHTKTAMDIFHVSEEDVTANMR 780

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +                    G++    A                          
Sbjct: 781 RQAKAVNF--------------GIVYGISDYGLAQ------------------------- 801

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                             + +      V +  + + Q  +Q    G              
Sbjct: 802 -----NLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQ---KGYVTTLLH------- 846

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                           R     D+ +    + T      R            +Q  + DI
Sbjct: 847 ----------------RRRYLPDITSRNFNVRTF---AERTAMNTP------IQGSAADI 881

Query: 610 LAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           + + M++        +    ++L  HDE++ E P  +      L   +M    +    +P
Sbjct: 882 IKKAMIDLSVSVREERLQARLLLQGHDELILEAPKEEIGRLCRLVPEVMEQAVT--LRVP 939

Query: 663 LKAEGYESKRY 673
           LK + +    +
Sbjct: 940 LKVDYHYGPTW 950


>gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 887

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 93/651 (14%), Positives = 184/651 (28%), Gaps = 133/651 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
               + D               Q    K  L +     +  +S  ++ +L     LD+  
Sbjct: 342 IGLVWQDLDSHEIYLADWDQAIQSPAFKAWLADASNQKILFDSKRDQVILANA-GLDLAG 400

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF-CKGETHECLYDRNKPN 149
                 ++             + + L        +   L+                +   
Sbjct: 401 ID-FDIMIANYLIDTH-----LAKEL-ADMLTNNDMPSLVKYDEAVYGKGAKQAVPDSAE 453

Query: 150 HREAWRLFGEYCKGDVT-VTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHT 206
             +      +     V  +T+++         +  E+    +   +  +G  VD  +   
Sbjct: 454 LNDHLANKVKAMGLLVEPLTQQLKDLHMWDLYQTIEMPLARVLARMEIQGVKVDAQILAD 513

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
            NQ +     +++ E+  L      +   +++L   LF +  L +   T+   +T   VL
Sbjct: 514 KNQALLERLAQMEAEIYDLAG-EEFNINSVKQLGVILFEKLELPIIKKTKTGYSTAADVL 572

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P    +   R   S+     L  L   +  DG++         ++TGR S   
Sbjct: 573 EKLADKHPIIPAILEYRQ-ISKLQGTYLAGLPTYIKEDGKIHSRFVQ-TLTQTGRLSSAD 630

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLA 382
              QN+P                                 +R   + + EG +L  AD +
Sbjct: 631 PNLQNIPARIEEGRR-------------------------IRQAFVPAHEGWQLFGADYS 665

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RVLA +A +Q  + AF++GED++  T  R F + P  V                  
Sbjct: 666 QIELRVLAHIAQDQHMIAAFKSGEDIHEATARRVFGLDPDTV------------------ 707

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                                     ++       A NF      +    +         
Sbjct: 708 -------------------------IDANLRRQAKAVNFGIVYGISDYGLSNNLNIPRKH 742

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +   + + +K+  + +   ++    ++                             +  
Sbjct: 743 AKAFIENYFEKYPDIHQFMEDIVAEAKE--------------------------KGYVET 776

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
              R     D+  +            R            +Q  + DI+   M+    A  
Sbjct: 777 LFKRRRYLPDIDASNF---NIRSFAERTAMNSP------IQGTAADIIKIAMVRIQDALD 827

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                  ++L+VHDE++ E P  +    S L   +M S       +PLK E
Sbjct: 828 EKGLQSRLLLSVHDEVILEGPAEEMEVLSDLVPDIMESCVE--LDVPLKVE 876


>gi|332638560|ref|ZP_08417423.1| DNA polymerase I [Weissella cibaria KACC 11862]
          Length = 904

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/654 (14%), Positives = 188/654 (28%), Gaps = 124/654 (18%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
             F   ++    +      ++ Q   +   L++  V     N+      L+    L +P 
Sbjct: 358 VGFVIGNNEHGYFVSRDIELLVQGTPVNRILQDATVKKNVFNAKGTIVALRR-LGLTLPN 416

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                 L++A           +G AL   +       +        +      D +   H
Sbjct: 417 VA-FDLLLVAYLLDANDNNNDMG-ALAHENGYYAVRTDEEVYGKGAKFAIPEADEDLFEH 474

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                +  +Y K  +       ++ +     E  L Y+   +   G  VD      +   
Sbjct: 475 LGRKAMAIQYLKDPLMAKLTEHEQTQLYDDIELPLTYVLADMEATGITVDANTLLEMRSK 534

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
           +     +L+Q +         + +  ++L   LF E G      T+   +T   VL    
Sbjct: 535 LTERLAELEQTIYQQAGH-EFNVQSPKQLGVVLFEEMGYTPIKKTKTGYSTSVEVLEQMG 593

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            + P    +   R   ++     +  L+  ++       T      ++TGR S      Q
Sbjct: 594 DV-PLVASILAYRQ-IAKIQSTYVEGLLRVIHGSDSKVHTRYLQTLTQTGRLSSVDPNLQ 651

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEA 386
           N+P                                 +R   +  E G +++ AD + IE 
Sbjct: 652 NIPVRIEEGRR-------------------------IRKAFVPREKGWRILSADYSQIEL 686

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA + G++   +AF  GED++  T  R F + P +                       
Sbjct: 687 RVLAHITGDKHLQEAFINGEDIHAATARRIFGIGPDET---------------------- 724

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                                 +        A NF      +    A          +++
Sbjct: 725 ---------------------VDGNIRRQAKAVNFGIVYGISDFGLAKNIGVSRKQAKQI 763

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + +++  V     E+  A  +                             +   + R
Sbjct: 764 IDTYFEQYPGVKTWSEEIIAAARE--------------------------QGYVETIAHR 797

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                D+               R            +Q  + DI+   M+N  KA      
Sbjct: 798 RRYLPDIKAKNF---NLRSFAERTAMNSP------IQGSAADIIKIAMINMEKALRDAGL 848

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              ++L VHDE++ E P+++      L   +M S       +PL    +E + +
Sbjct: 849 QAKMLLQVHDELIFEAPESELPILHELVPRVMDSAMQ--LDVPLIVASHEGETW 900


>gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4]
 gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4]
          Length = 884

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 94/656 (14%), Positives = 189/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +  +  K+ L + ++     ++      LK    
Sbjct: 336 HKADIQGFG--IQNENGCYFIPSDVALKSEAFKKWLADDEMRKYTFDAKRAIVALKW-KG 392

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           ++I    +   L+ A         K      K   ++    K     + KG         
Sbjct: 393 IEIQGI-YFDLLIAAYLLDPADTDKDFRAVAK--MKETHAVKSDEEVYGKGAKRAVPAQD 449

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 450 IVAEH-VARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERL 508

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
            ++   +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 509 RSMGDELAGRLKEMEQEIYELAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 567

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL    +      ++ + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 568 VLDKLMEHHEIIPKILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 626

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   I   EG  +  AD
Sbjct: 627 TDPNLQNIPIRLEEGRK-------------------------IRQAFIPSKEGWVMYAAD 661

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 662 YSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 721

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A           +   + +   + +   +         
Sbjct: 722 YGIS-----DYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTL-- 774

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 775 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 794

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 795 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 826

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 827 GLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 880


>gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6]
          Length = 857

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/671 (14%), Positives = 189/671 (28%), Gaps = 147/671 (21%)

Query: 30  VILFAFGFDDHPVELWDCVH-----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
           ++                V            +L+  LE++    V H+S   R +L    
Sbjct: 303 LVGVGLAPAPGEAFYVPLVASDGGLGEGALALLRGWLEDSARLKVVHDSKRLRVLLARY- 361

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLY 143
            + +         + +                 +  +  +  K  + R            
Sbjct: 362 GVSLS-GVVADPRLESFLVDPTG---------LVPHRIDQLVKAFLQRTVPPAKSVLGSG 411

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTIN 193
            + +     A  + G +      V   ++ ++     +          +  L  +  T+ 
Sbjct: 412 KKARRFAELAASVTGAWACQRADVVVTMWPQIRERLEEVDQLPHLQEVDLPLSEVLATME 471

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  V+      ++        +L+ E+         +    ++L   LF E  L +  
Sbjct: 472 LAGVRVEPTELEEMSAEFRATLLQLEAEIWRQAG-REFNVASPKQLGVVLFEELNLPVIK 530

Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQ 309
            T+   +T   VL    +  P A  +  +R + ++        L  A+N   GR+  T Q
Sbjct: 531 RTKTGYSTAAEVLERLTREHPIAGLLLQHR-KLAKLLTTYTEVLRAAINPVTGRVHPTFQ 589

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
              A+ TGR        Q  P  +   +                          +R   I
Sbjct: 590 QTYAA-TGRLISTNPDIQKTPVRTPEGKR-------------------------IRRAFI 623

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            + G +++ AD + IE R+LA  + +   L+AF   ED++  T A  F   P  VT  QR
Sbjct: 624 PAPGWRIISADWSQIELRLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEAVTDAQR 683

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           ++ K +  A                                                +  
Sbjct: 684 SVAKTVNFATI--------------------------------------------YGQGA 699

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                      T  +     + Q ++ V E    L +  E  + +G              
Sbjct: 700 TALGQRLGLKRTEAKGYISRYFQAYAGVREW---LDRTIEGALASGYVETLL-------- 748

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR  V  ++ +N + +     +               +Q  + D+
Sbjct: 749 ---------------GRRRVIPELSSNSAMVRQVGMR---------MAANTPIQGSAADL 784

Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLP 662
               M+   K          ++L +HDE+V E    +      ++   M S       +P
Sbjct: 785 CKLVMLTLAKRFQTRGLQTRMLLQIHDELVFEAAPDEVDASCQLIREAMESVGD--LRVP 842

Query: 663 LKAEGYESKRY 673
           L+        +
Sbjct: 843 LRVHIGVGANW 853


>gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
 gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835]
          Length = 945

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/688 (13%), Positives = 190/688 (27%), Gaps = 146/688 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
             D ET     L             ++  +F  + H          P   + ++  LE  
Sbjct: 381 CFDTETTGLNPLMDN----------LLGVSFCAEPHKAWYMPV-SGPADLEAVRPLLEGP 429

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQK 122
               + H+  F+  VL     + +    +  TL+            +  + E   L    
Sbjct: 430 A-EKIGHHLKFDLEVL-RANGIHVK-GPFFDTLLAHALIAPGMKHGMDVLAE--NLLQYS 484

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
             + K+                R          + G+Y   D  +T ++   L+    + 
Sbjct: 485 TIKLKD--------IAAPGAKKRELDTSGVPVEVMGKYSAEDADITLQLSAVLKRQVKES 536

Query: 182 ---------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   +   G  V        +  V      L + +E      + +
Sbjct: 537 GMEKLFRTVELPLLPVLADMEFSGIRVLPESLEKASVKVGAIIDGLRERIEEAAGHPL-N 595

Query: 233 SRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L  +LF E  L      T+T    T +  LS+     P    +   R    +  
Sbjct: 596 LNSPKQLGDFLFGELELVKKPKKTKTGQFVTDEDTLSALAPQHPIIADILAYR-ENMKLK 654

Query: 288 VLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              L+ L + +   DGR+      +  + TGR +      QN+P  +             
Sbjct: 655 STYLDALPKYICPRDGRIHTQFHQM-LTATGRLASQDPNLQNIPVRTEQGR--------- 704

Query: 347 PTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                            +R+  +  SE   ++ AD + IE R++A ++G+     AF  G
Sbjct: 705 ----------------LIRTAFVPASEKYTMLSADYSQIELRIMAALSGDPAMCGAFREG 748

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D++  T AR + +   QV    R   K +   + Y   A        +  L        
Sbjct: 749 RDIHTETAARVYGIPRDQVDAVMRRAAKTVNFGIIYGISA-----FGLSQRLGCPRGEAA 803

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
               +   ++   ++F   +     +    +  +G    R+       +  +        
Sbjct: 804 TLIENYFTQFPVVKSFMEDLVHKAEQAGYAETLLGR--RRMIPEINSANKTIKS---AAE 858

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +    T   G A    K   + +  + K            RS +   + +          
Sbjct: 859 RTAINTPIQGTAADMIKIAMIHVDKLLKGT----------RSRLILQIHDEL-------- 900

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                                       +++  +          DE+             
Sbjct: 901 ----------------------------LVDLHR----------DEL---------DLIP 913

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +   M S      G+P+  E      +
Sbjct: 914 KIEEAMVSALPLPNGVPILVEARTGGNW 941


>gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB]
 gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB]
          Length = 901

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 98/673 (14%), Positives = 191/673 (28%), Gaps = 141/673 (20%)

Query: 28  VCVILFAFGFDDHPVELWDCVHD-----------PVMPQVLKEALENTDVTIVAHNSYFE 76
             +I  A G D                         +  VL   L +  + +V H+    
Sbjct: 338 AELIGVALGLDSGNAGYIPLEPGAAEKSASSLSEEQVFPVLFPFLADKKIALVGHDLKTV 397

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
             VL     + +  +  + T+V A                +LS    +     +    K 
Sbjct: 398 LIVLSQ-KGVKVQ-NPLLDTMVAAYILNPAR------RGYELSEIVQDYLHRQVEPLRK- 448

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK----------EQELW 186
                     +           ++    V    E+   L     +          E  L 
Sbjct: 449 -KLVGGSSPKQSPASFPPERLRDFACRRVEAIGELASTLIEKMEETGLRELFDSVEMPLV 507

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            +   + ++G  +D+ L   ++Q +    +  + ++ +L      +    ++L+T LF +
Sbjct: 508 AVLAAMEEKGVLLDLHLLKEMSQELGHLLSLSEAKIYALAG-ERFNIASPKQLQTILFEK 566

Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDG 302
             L     T+   +T   VLS+         ++   R   ++     ++ L   +N   G
Sbjct: 567 LNLPKGKKTKGGYSTDVEVLSNLALNHELPAEILAYR-SMAKLKSTYIDALPSLINIRTG 625

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           R+  +     A+ TGR S      QN+P  +   +                         
Sbjct: 626 RIHTSYNQTVAA-TGRLSSSNPNLQNIPIRTLEGKR------------------------ 660

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   IA  G  +V AD + IE RVLA ++ +   + AF  GED++  T A  F V P 
Sbjct: 661 -IRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVLINAFAAGEDIHSRTAADVFGVFPE 719

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            +  + R   KV+   + Y   A        +  L +         +   +++E  + + 
Sbjct: 720 MINAEMRRQAKVINFGVLYGMSA-----FGLSRELGIPQKQAQAYIDGYFKKYESVKTYL 774

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
             + +   E       +     R        +  V +L     +        G A    K
Sbjct: 775 DGILQQARERGYVTTLLNR--RRYLPEINSVNPAVRQL---AERMAINAPIQGTAADLIK 829

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
              + +  + ++K                                               
Sbjct: 830 MAMLRIADLIREKGM--------------------------------------------- 844

Query: 603 QAVSRDILAEGM-MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKG 660
                      M M                +V E P  ++     L    M         
Sbjct: 845 --------KSAMTMQVHDE-----------LVFEVPQEEKIALMNLVRQEMEGVVE--LK 883

Query: 661 LPLKAEGYESKRY 673
           +PLK +    + +
Sbjct: 884 VPLKVDIASGRNW 896


>gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17]
 gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17]
          Length = 877

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 94/656 (14%), Positives = 189/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +  +  K+ L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIPSDVALKSEAFKKWLADDEMRKYTFDAKRAIVALKW-KG 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           ++I    +   L+ A         K      K   ++    K     + KG         
Sbjct: 386 IEIQGI-YFDLLIAAYLLDPADTDKDFRAVAK--MKETHAVKSDEEVYGKGAKRAVPAQD 442

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 443 IVAEH-VARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
            ++   +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 502 RSMGDELAGRLKEMEQEIYELAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL    +      ++ + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 561 VLDKLMEHHEIIPKILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   I   EG  +  AD
Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFIPSKEGWVMYAAD 654

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 655 YSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A           +   + +   + +   +         
Sbjct: 715 YGIS-----DYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTL-- 767

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 788 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 819

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 820 GLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 873


>gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
 gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726]
          Length = 882

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/632 (14%), Positives = 185/632 (29%), Gaps = 139/632 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
           + L + LE++      H +     +L       I ++     T + A           + 
Sbjct: 372 KALVQWLESSA-PKYFHAAKAAFHMLA---GRGIELNGLAHDTALAAYILRPGQRTYELS 427

Query: 114 EAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           +   +   + +    E ++                    E           D+    E++
Sbjct: 428 DVYQRHLQKSLGAASEQMSLL-----DNSSLVDQAAAIMELAEKLTT-ELQDIDS-FELY 480

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  L  +   +   G  VDV +  T       +  + ++    L      +
Sbjct: 481 T------DLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQERSARELAGDDKLN 534

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK--KLTPQAIQVFNNRMRASRSA 287
               ++L+  LF    +     T+   +T  + +         P    +  +R    +  
Sbjct: 535 LNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFLDHLLAHR-EYQKMK 593

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              L  L++ +  DGR+  T      + TGR S      QN+P  + +            
Sbjct: 594 TT-LEGLIKTVQPDGRIHTTFNQ-TVTSTGRLSSTEPNLQNIPVRTEAGR---------- 641

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                           +RS  I  EG  +L+ AD + IE RV+A ++ +   ++A++ GE
Sbjct: 642 ---------------QIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGE 686

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           DL+    +R F+V   QVT + R   K M   L                GL+    +   
Sbjct: 687 DLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLV--------------YGLSAFGLSQQ- 731

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                + + +++ ++   V +  +++ +
Sbjct: 732 -----------------------------LGIPAGEAKSIMESYFERFGGVKKYLDDVVE 762

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
              +                          +       GR     ++ ++          
Sbjct: 763 QARK--------------------------DGYTATLFGRRRYLPELNSDN---RLAREN 793

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEF 642
             R            +Q  + DI+   M+   +A       ++L VHDE+V E    +  
Sbjct: 794 AERAALNAP------IQGTAADIIKVAMIRVDRALRDMKSRVLLQVHDELVVEVAPGEAD 847

Query: 643 NASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
               +    M S       +PL+        +
Sbjct: 848 QVREILEREMDSAIE--LNVPLEVSAGAGTDW 877


>gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 596

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 147/685 (21%), Positives = 225/685 (32%), Gaps = 128/685 (18%)

Query: 6   IDFETRSP--IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
            D ET      D+   G+  Y  D     +   F           H    P       E 
Sbjct: 25  FDTETYYSKGYDIRSLGVDAYVADPRFDCYLASFWGPHGNFV--GHPSECPWE-----EF 77

Query: 64  TDVTIVAHNSYFERTVLKAC--FNL---DIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            D   ++HN+ F+R V        +    I    W  +  LA     P  L    E L  
Sbjct: 78  NDCVWISHNARFDRAVFFRMKELGIVPAHIMPREWHDSAALAVYLQAPRNLAGAAEKL-- 135

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-RLEP 177
                  G++                          +   +Y   D  +  E++    + 
Sbjct: 136 ------LGEKPNKAIRDAMKGIQGGLLCHD------KAVLDYALDDARLACELWISHCDK 183

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
              KE+ L  L     + G  +D        + +   R     E  +L +         +
Sbjct: 184 WPKKERLLSQLTIEQGEYGVHLDQKRIREGIETLTQVRD---DEATNLPWFPRLKPSSPK 240

Query: 238 KLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
                      + + + T       Q  +    +  P    +   R       V  L T+
Sbjct: 241 AFAEACQQAR-IPIPNSTSEDDPQTQEWIERYGERYPWLKHMSEWRKANRMLKV--LETM 297

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGC-VFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
                 DG L   L++ GA  TGRW+G      QN  R +    +               
Sbjct: 298 QSRCRRDGSLPFGLKYFGAIATGRWAGDAGLNFQNFNREAYYGVDP-------------- 343

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE---TGEDLYV 410
                      R C++A  G KL++ADL+ IE RVLAW+AG++               + 
Sbjct: 344 -----------RKCLVARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIYQAHA 392

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T          +   +   + K   + LGY  G K FQ +A   GL ++          
Sbjct: 393 ETSMNWKGGDLKKENSNLYLLAKCRVIGLGYGAGCKTFQSLARGYGLEMSIGE------- 445

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                            +R    +R+ + R+  LW  +  +   
Sbjct: 446 --------------------------------AKRTVDDFRKANPRIVSLWQAVEDSMRY 473

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            I                       +   + LPS RS+ Y DV        TT R   R 
Sbjct: 474 HI----------------------GSTFFMYLPSLRSIRYFDVQEEEGLTATTERGGRRL 511

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
           + YGGKLTEN+VQA +RD+ AEG++   KAG  I+ TVHDE++CE P+  +     +  L
Sbjct: 512 HWYGGKLTENLVQATARDVFAEGLLRIHKAGIRILWTVHDEVICEVPENSDITVETVTDL 571

Query: 651 MTSNPSWAKGLPLKAEGYESKRYRK 675
           +   P W  GLP+ AEG E+  Y K
Sbjct: 572 LAQTPDWIPGLPVAAEGIETSCYTK 596


>gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 780

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 83/476 (17%), Positives = 153/476 (32%), Gaps = 75/476 (15%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G Y   +  +T  + +  +           
Sbjct: 457 YLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L+ + G+ +   T     +T + VL+   +      +V       S+      +
Sbjct: 576 KQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTD 635

Query: 293 TLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L E +N   GR+  +     A  TGR S      QN+P  +                  
Sbjct: 636 RLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIPIRTAEGRR------------- 681

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +A +G KL+ AD + IE R++A +A ++  L AF    D++  
Sbjct: 682 ------------IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRA 729

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           T A  F V    VT D R   K +   L Y   A           + ++       
Sbjct: 730 TAAEVFGVELENVTTDMRRSAKAINFGLIYGMSA-----FGLAKQIGVDRKQSQAY 780


>gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901]
          Length = 831

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 105/651 (16%), Positives = 182/651 (27%), Gaps = 159/651 (24%)

Query: 38  DDHPVELWDCVHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D    + +       + ++   K+ + +    I  H        L+              
Sbjct: 321 DGEKTKFYSLDRLNEIEEIFRNKKIITDDAKGIY-H------VCLEKGLTF---PEVCFD 370

Query: 96  TLVLARSNGL-PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
             + A             G  LK      E+    I      +             +E  
Sbjct: 371 ARIAAYVLNPADQNPGLKGLYLKYDLPVYEDVSLNIRGLFYLKKEMMKKI----FEQEQE 426

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           RLF E                      E  L  +   +   G  VD      ++  +  +
Sbjct: 427 RLFYE---------------------IELPLTPVLAQMEHTGIQVDREALKEMSLELGEQ 465

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTP 271
             +L +E+  L      +     +L   LF + GL +   T+   +T   VL        
Sbjct: 466 IEELIREIYVLAG-EEFNLNSPRQLGVILFEKLGLPVIKKTKTGYSTDAEVLEELLPFHE 524

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
              ++ N R    +      + L+  +N   G+L  T    G + TGR +      QN+P
Sbjct: 525 IIGKILNYRQ-LMKLKSTYTDGLMPLINERTGKLHTTFNQTG-TLTGRLASSEPNLQNIP 582

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVL 389
                  +L                         R   I S G   +V AD + IE R+L
Sbjct: 583 IRLELGRKL-------------------------RKMFIPSPGYDYIVSADYSQIELRLL 617

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A  + E   ++A++ GED++  T +  F V+  +VT + RA  K +   + Y        
Sbjct: 618 AHFSEEPKLIEAYQKGEDIHRKTASEVFGVSLEEVTPEMRAHAKSVNFGIVYGIS----- 672

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                  L +          +    +     +   +     E                  
Sbjct: 673 DFGLGRDLKIPREVAGKYIKNYFANYPKVREYLDELVRTAREKGYVTTLF---------- 722

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                                           +RR +P +  K                 
Sbjct: 723 -------------------------------GRRRYIPELSSKNRTVQGF---------- 741

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
                  R+ +NT                   +Q  + DI+   M+N  K          
Sbjct: 742 -----GERTAMNT------------------PLQGSAADIIKLAMINVEKELKARKLKSR 778

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           ++L+VHDE+V E P  +      L   +M S       +PL AE    K +
Sbjct: 779 LLLSVHDELVLEVPAEELEEVKALVKGVMESVVE--LKVPLIAEVGAGKNW 827


>gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 871

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 80/670 (11%), Positives = 177/670 (26%), Gaps = 159/670 (23%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-----TDVTIVAHNSYFERT 78
           +A+   +      FDD  +       + +    LK+ +E        V+I   N      
Sbjct: 337 FADAAEINHIGVSFDDEKIYTIY-TGEEITFSYLKKKIEELTACVKTVSIC--NIKEALK 393

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCK 135
            +                ++ +          A + V        Q      + +    K
Sbjct: 394 WITFA-----NETSAFDPIIASYLLNPLKSDYAFEDVAR-----EQLNILIDDKMEEARK 443

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTIN 193
                    ++     +                  + ++       + E+        + 
Sbjct: 444 SCYTAYTAYKSVFFLSD-----------------RLKEKKMEHLFTDIEMPLAFTLFDME 486

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  V         Q +  +  +L+ E+  +      +    ++L   LF    L    
Sbjct: 487 QAGVKVKAEELKVYGQQLGGKINELETEIYEIAG-ETFNINSPKQLGVVLFEHLNLPNGK 545

Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+   +T   VL       P   ++   R   ++      + L   +  DGR+ G    
Sbjct: 546 KTKTGYSTAADVLEKLAPDYPIVSKILEYRQ-LAKLKSTYADGLANFIQEDGRIHGKFNQ 604

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P                             +   +R   + 
Sbjct: 605 -TVTATGRISSTEPNLQNIPVR-------------------------MELGRLIRKVFVP 638

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            E    V AD + IE R+LA  +G++  + A++   D++  T ++ F++   +VT  +R 
Sbjct: 639 EEDYVFVDADYSQIELRILAHCSGDESLISAYKEARDIHRITASQVFHIPFDEVTDLERR 698

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +                    G++    +  +                        
Sbjct: 699 NAKAVNF--------------GIVYGISSFGLSQDLSI---------------------- 722

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                              + + +  +    ++     ++                    
Sbjct: 723 --------TRKEAGEYIDNYFKTYPGIKTFLDDTVAHAKE-------------------- 754

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                    ++   GR     ++ +      +      R            +Q  + DI+
Sbjct: 755 ------QGYVVTLFGRRRPVPELESGNFMQRSF---GERVAMNAP------IQGTAADIM 799

Query: 611 AEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
              M+   +          +VL VHDE++ E    +      +    M    S    +PL
Sbjct: 800 KIAMIGVNRTLKEKQMKSKLVLQVHDELLIEAYKDEVEEVKSILKREMEEAAS--LSVPL 857

Query: 664 KAEGYESKRY 673
             + +    +
Sbjct: 858 DIDMHTGNSW 867


>gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
 gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367]
          Length = 886

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 99/662 (14%), Positives = 205/662 (30%), Gaps = 135/662 (20%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
             +  F  G +D     W    D  + Q   LK  LEN D+     ++      L+    
Sbjct: 340 AELAGFVIGHNDQ----WWVSRDTALLQQAPLKGLLENADIAKQVFDAKRTFVALQR--- 392

Query: 86  LDIPIHRWICTLVL-ARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           L + +    C L+L +         + L  +           +E              + 
Sbjct: 393 LAVTLTGVDCDLLLGSYLLNTYDNSNDLGRLAMEHGYHQVATDEDVYGKGAKAAIPDDDD 452

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           ++  +      A          D        ++ +     E  + ++   +   G  V+ 
Sbjct: 453 VFFSHLARKARAIEQLRPQIFKD----LADNEQTDLYRDIELPMAFVLARMEVAGITVEA 508

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
           +    +      +  +++Q + +       +    ++L   LF + GL +   T+   +T
Sbjct: 509 SELEAMGSKFTEQLAEIEQTIYNEAG-EEFNIGSPKQLGHILFEKMGLPVIKKTKTGYST 567

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL       P A  +   R + ++     +  L++ ++ D +   T      ++TGR
Sbjct: 568 AVGVLEKLAAEAPIAENILKYR-KIAKIQSTYVEGLLKVIHPDDQKVHTRYLQTLTQTGR 626

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377
            S      QN+P  +                              +R   + S    ++ 
Sbjct: 627 LSSVDPNLQNIPVRNEEGRA-------------------------IRKAFVPSHPDWEIF 661

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVME 436
            +D + IE RVLA M+ ++   +AF  G+D++  T  R F +    +VT + R   K + 
Sbjct: 662 SSDYSQIELRVLAHMSHDKQMQEAFREGQDIHAATARRIFKMGPDEEVTPNIRRQAKAVN 721

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y            +  + ++        ++  EE+   + +   M +   E    +
Sbjct: 722 FGIVYGIS-----DFGLSQNIGISRKQAKAFIDTYFEEYPGVKAYTERMVQQAHELGYVE 776

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                                                      A +RR +P +  +    
Sbjct: 777 TI-----------------------------------------AHRRRYLPDINSRNFNQ 795

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                               R+ +NT                   +Q  + DI+   M+ 
Sbjct: 796 RSF---------------AERTAMNT------------------PIQGSAADIIKIAMIR 822

Query: 617 ATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
             +A       ++L VHDE++ E P ++    + L   +M S       +PLK E +   
Sbjct: 823 MEQALKDMQATMLLQVHDELIFEAPASEIDTLAKLVPSVMDSAIE--LEIPLKVESHYGP 880

Query: 672 RY 673
            +
Sbjct: 881 TW 882


>gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
 gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787]
          Length = 872

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 95/683 (13%), Positives = 200/683 (29%), Gaps = 170/683 (24%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL---------KEALENTDVT 67
           TK  +  +  +  +      F    + ++       + ++L          + L   DV 
Sbjct: 330 TKNVLPLFVNEAGLTGVGLAFGKEDIYVFTTEQGMEISELLEQVETLSKEVDVLAIADVK 389

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
               N+          +  ++       T+V A        LK   E+  ++ + ++   
Sbjct: 390 ----NAM--------QYIPNVNQSVCFDTIVAAYLLNP---LKNDYESADIAREYLDI-- 432

Query: 128 ELIARFCKGETHECLYDRNKPNHREA-WRLFGEYC----KGDVTVTREIFKRLEPLSSKE 182
            LI             D      +++ +  +  Y       D      + +        E
Sbjct: 433 -LID------------DNQIDEAQKSCYEAYTAYESSKILRD-----RLKETEMEQLFDE 474

Query: 183 QELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E+  +     +   G  V     H   + +  +   L++++  LT     +    ++L 
Sbjct: 475 IEMPLVFTLYDMEQNGVKVAAEALHIYGEQLGQKIVDLEKDIYELTG-ETFNINSPKQLG 533

Query: 241 TWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL     T+   +T   +L       P   ++   R   ++      + L   
Sbjct: 534 VILFEKLGLPHGKKTKTGYSTSADILDKLAPEYPVVSKILEYRQ-LTKLKSTYADGLAGY 592

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +  DGR+ G       + TGR S      QN+P                           
Sbjct: 593 IKDDGRIHGKFNQ-TITATGRISSTEPNLQNIPVRMELGR-------------------- 631

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R   I  +G   V AD + IE R+LA  +G++  + A++   D++  T ++ F
Sbjct: 632 -----LIRKVFIPEDGYVFVDADYSQIELRILAHCSGDEQLINAYKEARDIHRITASQVF 686

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
           +    +VT  QR   K +                    G++    +  +           
Sbjct: 687 HTPFEEVTDLQRRNAKAVNFG--------------IVYGISSFGLSQDLSI--------- 723

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                      +  +++ + +  +      L  A E   ENG  
Sbjct: 724 ---------------------TKKEAAQYIESYFETYPSIKGF---LDDAVEHAKENGYV 759

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                      GR     ++ ++     +      R        
Sbjct: 760 TTV-----------------------FGRRRPVPELSSSNFMQRSF---GERVAMNAP-- 791

Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-L 650
               +Q  + DI+   M    +          +VL VHDE++ E  + +  +   +    
Sbjct: 792 ----IQGTAADIMKIAMNGVNRRLKENNMRSKLVLQVHDELLIEAYEEELEDVKEILSHE 847

Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673
           M +       +PL+ + +  K +
Sbjct: 848 MVNAAK--LHVPLEVDMHTGKNW 868


>gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
 gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM
           16841]
          Length = 907

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 79/673 (11%), Positives = 184/673 (27%), Gaps = 152/673 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF---ER-------T 78
             +  A  F +     +       +   +   L           + +   +         
Sbjct: 355 EFLGMAVCFGEKDTYFF--KAGEELTSSVLSDLLTHSEA-----AGYMTLDLKPQLGLLH 407

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEAL---KLSSQKMEEGKELIAR 132
           +++   N  +        ++ A            + + +      + S+    GK     
Sbjct: 408 MIEQRENGCLNQKNIFDNVIAAYLLNPLKNEYPYEDIAKDYCSLMIPSRVDLLGKS--GY 465

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQ 190
               +     + +           +  +      +  E+         +  E+  +    
Sbjct: 466 DLAMDEKPEGFLKTVCFMA-----YTAFSSKKA-MMEELKATGMEQLYETIEMPLVFTLA 519

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  +D A      + + V   +L+  +         +    ++L   LF +  + 
Sbjct: 520 DMEHTGIAIDAANLKEYGEKLAVRIKELETRIYQEAG-EEFNINSPKQLGVILFEKLEMP 578

Query: 251 LEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
               T+   +T   VL       P    +   R   ++      + L   +  DGR+  +
Sbjct: 579 YGKKTKTGYSTAADVLDKLAPEYPIVADILEYRQ-LTKLKSTYADGLANYIKEDGRIHTS 637

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                 + TGR S      QN+P                                 +R  
Sbjct: 638 FNQ-TITVTGRLSSTEPNLQNIPMRIELGR-------------------------LIRKA 671

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            + ++G   + AD + IE RVLA M+G++  ++A+   +D++  T ++ F++   +VT  
Sbjct: 672 FLPAKGCVFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDL 731

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           QR   K +   + Y            +  L+                             
Sbjct: 732 QRRNAKAVNFGIVYG-----ISSFGLSQDLS----------------------------- 757

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                               + + + + ++    + L    E   +NG            
Sbjct: 758 ----------ISKKEAAEYIERYFETYPKIKTFLDGL---VEDAKKNGYVTTM------- 797

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                            GR     ++ ++     +      R            +Q  + 
Sbjct: 798 ----------------FGRRRPVPELSSSNFMQRSF---GERVAMNAP------IQGTAA 832

Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKG 660
           DI+   M+              +++TVHDE++ ET + +      +    M         
Sbjct: 833 DIIKIAMIRVHDRLLEEHLKSRLIITVHDELLIETAEDEIDRVKEILTEGMQQAAD--LK 890

Query: 661 LPLKAEGYESKRY 673
           + L  + +  K +
Sbjct: 891 VALAIDLHTGKNW 903


>gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus]
          Length = 889

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 101/658 (15%), Positives = 193/658 (29%), Gaps = 146/658 (22%)

Query: 34  AFGFDDHP-----VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
           A  F D       VEL D   +    + L + L + D     H +     +L       I
Sbjct: 355 AIAFVDQERHGLQVELGDLSAEDD--KALAQWLAS-DTPKYFHEAKAAFHMLA---GRGI 408

Query: 89  PIHRW-ICTLVLARSNGLPSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +      T + A          A+ +   +   + +    E ++               
Sbjct: 409 ELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQKTLSAATEQLSLLDNS---------- 458

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                             +T   +     E  +  E  L  +   +   G  VDV +  T
Sbjct: 459 ---SLVDQAAAIMELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILET 515

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
                  +  + ++    L      +    ++L+T LF    L     T+   +T  + +
Sbjct: 516 QKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEI 575

Query: 264 SSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
                    P    +  +R +  +     L  L++ +  DGR+  T     A  TGR S 
Sbjct: 576 EQLAAKNPHPFLDHLLAHR-KYQKMKTT-LEGLIKTVQPDGRIHTTFNQTVA-STGRLSS 632

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380
                QN+P  + +                            +RS  I  +G  +L+ AD
Sbjct: 633 TEPNLQNIPVRTEAGR-------------------------QIRSAFIVGDGFDELMTAD 667

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RV+A ++ +   ++A++ GEDL+    +R F+V   QVT + R   K M   L 
Sbjct: 668 YSQIEMRVMAHLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLV 727

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          GL+    +                                     
Sbjct: 728 --------------YGLSAFGLSQQ------------------------------LGIPA 743

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              + + +++ ++   V +  +E+     +                          +   
Sbjct: 744 GEAKSIMESYFERFGGVKKYLDEVVAQARK--------------------------DGYT 777

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
               GR     ++ ++            R            +Q  + DI+   M+   +A
Sbjct: 778 ATLFGRRRYLPELNSDN---RLARENAERAALNAP------IQGTAADIIKVAMIRVDRA 828

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE+V E    +      +    M S       +PL+      K +
Sbjct: 829 LQGMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEVSAGAGKDW 884


>gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579]
          Length = 891

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG        +
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFCTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
 gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141]
          Length = 879

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 102/658 (15%), Positives = 193/658 (29%), Gaps = 146/658 (22%)

Query: 34  AFGFDDHP-----VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
           A  F D       VEL D   +    + L + L +       H +     +L       I
Sbjct: 345 AIAFVDQERHGLQVELGDLSAEDD--KALAQWLASDA-PKYFHEAKAAFHMLA---GRGI 398

Query: 89  PIHRW-ICTLVLARSNGLPSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +      T + A          A+ +   +   + +    E ++               
Sbjct: 399 ELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQKTLGAATEQLSLLD------------ 446

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
             +               +T   +     E  +  E  L  +   +   G  VDV +  T
Sbjct: 447 -DSSLVDQAAAILELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILET 505

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
                  +  + ++    L      +    ++L+T LF    L     T+   +T  + +
Sbjct: 506 QKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEI 565

Query: 264 SSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
                    P    +  +R    +     L  L++ +  DGR+  T     A  TGR S 
Sbjct: 566 EQLAAKNPHPFLDHLLAHR-EYQKMKTT-LEGLIKTVQPDGRIHTTFNQTVA-STGRLSS 622

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380
                QN+P  + +                            +RS  I  +G  +L+ AD
Sbjct: 623 TEPNLQNIPVRTEAGR-------------------------QIRSAFIVGDGFDELMTAD 657

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RV+A ++ +   ++A++ GEDL+    +R F+V   QVT + R   K M   L 
Sbjct: 658 YSQIEMRVMAHLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLV 717

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          GL+    +                                     
Sbjct: 718 --------------YGLSAFGLSQQ------------------------------LGIPA 733

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              + + +++ ++   V +    L +   Q  ++G                         
Sbjct: 734 GEAKSIMESYFERFGGVKKY---LDEVVVQARKDGYTATL-------------------- 770

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
               GR     ++ ++            R            +Q  + DI+   M+   +A
Sbjct: 771 ---FGRRRYLPELNSDN---RLARENAERAALNAP------IQGTAADIIKVAMIRVDRA 818

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE+V E    +      +    M S       +PL+      K +
Sbjct: 819 LQGMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEVSAGAGKDW 874


>gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
 gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442]
          Length = 877

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 94/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +  +  K+ L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIPSDVALKSEAFKKWLADDEMRKYTFDAKRAIVALKW-KG 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           ++I        L+ A         K      K   ++    K     + KG         
Sbjct: 386 IEIQGID-FDLLIAAYLLDPADTDKDFRAVAK--MKETHAVKSDEEVYGKGAKRAVPAQD 442

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 443 IVAEH-VARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
            ++   +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 502 RSMGDELAGRLKEMEQEIYELAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL    +      ++ + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 561 VLDKLMEHHEIIPKILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   I   EG  +  AD
Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFIPSKEGWVMYAAD 654

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 655 YSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A           +   + +   + +   +         
Sbjct: 715 YGIS-----DYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTL-- 767

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 788 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 819

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 820 GLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 873


>gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 888

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 91/660 (13%), Positives = 198/660 (30%), Gaps = 137/660 (20%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L    + +               Q  K  +E+     V +++   + +LK    L + + 
Sbjct: 344 LIYVVWGNKDHIYLASPDLVRESQAFKNWIEDPHAKKVLYDAKRSQVILK---GLGMDLE 400

Query: 92  RW-ICTLVLARSN---GLPSALKAVGEALKLSSQ-KMEEGKELIARFCKGETHECLYDRN 146
                 L+ +       L   +  V     L       E      +    E    LYD  
Sbjct: 401 GVSDDVLIASYLIHARDLSGDVANVAREFNLDYLAYDSEVYGKGKKVAVPEDKTRLYDHL 460

Query: 147 KPNHREAWRLF-GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
                    L      + +     E+++++E        L  +   +   G  VD +   
Sbjct: 461 VAKVSVINDLLPIIKDRLEADEMVELYRKIE------LPLAQVLAKMEIMGISVDRSRLV 514

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQR 261
            L+Q  + +  +L +E+         +    ++L   LF + GL     T++    T Q 
Sbjct: 515 GLSQSYEEQLDQLQEEIYREAGV-EFNINSTQQLSKVLFEDMGLKGGKKTKSGNYSTAQS 573

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
            L   + + P    +   R   ++     +  +++ ++ DG++         + TGR S 
Sbjct: 574 ELEKLQGV-PIIDLILAYRQ-LAKLQSTYVQGILDYIHQDGKVHSRFIQ-TLTTTGRLSS 630

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380
                QN+P  +    +                         +R   + S     +  +D
Sbjct: 631 ADPNLQNIPIRTEEGRK-------------------------IRQAFVPSHPDWVIFSSD 665

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA ++G+    +AF+  +D++  T A+ F+     ++KD+R   K +     
Sbjct: 666 YSQIELRVLAHVSGDPHLQEAFKENKDIHTATAAKVFHKDEKDISKDERRQAKAVN---- 721

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G++    +  +                                  
Sbjct: 722 ----------FGIVYGISDYGLSQNLSI------------------------------SR 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              +     + + + +V+E  ++  +   +                              
Sbjct: 742 QEAKAFIDKYFEIYPKVAEYMDKSVEIAREA--------------------------GYA 775

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                R     D+               R            +Q  + DI+   M+   +A
Sbjct: 776 KTLFNRRRYLPDLKAKN---YNVRSFAERTAMNSP------IQGTAADIIKVAMVEMDQA 826

Query: 621 ------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   +++L VHDE++ E    D  + A+++  +M +  S    +PL  +      +
Sbjct: 827 LKEHQLQANLLLQVHDELIFEVAKEDLEDLAALVKDVMENAVS--LDVPLIVDSNYGSTW 884


>gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 874

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 95/630 (15%), Positives = 190/630 (30%), Gaps = 139/630 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEA 115
           LK  +E+ D     H++    TV       DI +      T + A           + + 
Sbjct: 366 LKVWVESED-PKYLHDAK---TVFHMLKGRDITLRGIAHDTAIAAYLLRPGQRTYELHDV 421

Query: 116 L-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             +   +++  G + ++        +           E           D+    E+   
Sbjct: 422 YQRHLQRQLNLGGDQLSLLGDTSLVDSAAAV-LELAEELSAQLRGIDSYDLYADLEL--- 477

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                     L  +   + + G  VDV +     +    +  ++++E   L      +  
Sbjct: 478 ---------PLVSILAEMENAGIAVDVDVLEAQLKDFTAKVAQVEEEARQLVDEPSLNLS 528

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVL 289
             ++L   LF +  L     T+   +T    + +  +    P   ++  +R    +    
Sbjct: 529 SPKQLSVVLFDKLELPKTKKTKTGYSTAAGEIEALAETNPHPFLDKLLAHR-EYQKMKST 587

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L++A+  +GR+  T +   A  TGR S      QN+P  + +  +           
Sbjct: 588 -IEGLIKAVADNGRIHTTFKQTVA-STGRLSSTDPNLQNIPVRTEAGRK----------- 634

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +RS      G + L+ AD + IE RV+A ++ +   ++A+  GEDL
Sbjct: 635 --------------IRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDL 680

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    +R F+V   QVT + R   K M   L Y            +  L+          
Sbjct: 681 HNFVGSRVFDVPIDQVTPELRRRVKAMSYGLVYG-----LSAYGLSNQLS---------- 725

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                              + + +++ ++   V      L    
Sbjct: 726 -----------------------------ISAGEAKSIMESYFERFGGVKSY---LDNVV 753

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           EQ   +G                             GR     ++ ++            
Sbjct: 754 EQARRDGYTSTV-----------------------FGRRRYLPELTSDN---RVARENAE 787

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNA 644
           R            +Q  + DI+   M+   +A       ++L VHDE+V E    +    
Sbjct: 788 RAALNAP------IQGSAADIIKVAMIRVDRALESFNSRVLLQVHDELVVEIAPGELAEV 841

Query: 645 SMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
             +    M S  +    +PL+        +
Sbjct: 842 REIVEREMDSAITLL--VPLEVSAGTGVNW 869


>gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1]
 gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1]
          Length = 869

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 92/659 (13%), Positives = 195/659 (29%), Gaps = 137/659 (20%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDI 88
           V+ +A  ++           D +  Q     L++   +  ++N      +L      +DI
Sbjct: 329 VLGYAL-YNKEQAFYIS-FEDALNDQDFLNYLKDEKYSKYSYNIK--AQILSARWNGIDI 384

Query: 89  PIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                    + +          +K++ +     S + EE       F K           
Sbjct: 385 KGMN-FDLQLASYILNPSLKDEMKSICDYYDYDSVQYEE-----EVFGKLAKKHIPEIDL 438

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALA 204
              H  +      Y   D    + +    +    +  E  + Y+   +   G  +D+ + 
Sbjct: 439 LARHTVSKAKAI-YDLKD-EAIQRLKDEEQFDLYQNLELPVTYILADMEYVGAKIDIHVL 496

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             +    + +  ++++++  L      +    ++L   LF   GL     T+   +T Q 
Sbjct: 497 KEMEMDFEQQIKQIEEDIYML-ADKEFNISSPKQLGEVLFERLGLPNGKKTKTGYSTSQD 555

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           +L   + L P    +   R   ++ +   +  L E + +DG++         ++TGR S 
Sbjct: 556 ILEKIEGLHPIIPLIQKYR-MLTKLSSTYVKGLQEQVFADGKIHTIYNQA-LTQTGRLSS 613

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+P      +                          +R   I S    LV  D 
Sbjct: 614 IEPNLQNIPVRQEEGK-------------------------LIRKAFIPSHDY-LVTFDY 647

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE R+LA +AG Q  ++AF   +D++  T A  F V   +VT + R   K +      
Sbjct: 648 SQIELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVTANMRRQAKAVNFG--- 704

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         G+     +  +                                   
Sbjct: 705 -----------IIYGMGEFKLSQQI------------------------------GVSLK 723

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             +   + + +++  +    +++    E     G                          
Sbjct: 724 EAKEFIRRYFEEYPEIKVYMDQI---VEDCKNTGYVSTVLN------------------- 761

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--- 618
               R      + +    +    R+             + +Q    DIL   MM      
Sbjct: 762 ----RKRYIPTINDKNFMVREQARRF---------AMNSPIQGSGADILKLAMMKVNQLM 808

Query: 619 ---KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  +++L VHDE++ +    +      ++   M         +PLK +G  +  +
Sbjct: 809 KDKHLKSEMILQVHDELIFDVYKDELDEMMKLIKSAMVEAFQ--MDVPLKVDGAYASNW 865


>gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
          Length = 567

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 218/573 (38%), Positives = 282/573 (49%), Gaps = 58/573 (10%)

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQI 210
            W  F EY + DV   R++ KRL   +    EL  W+LDQTINDRG  VD  LA      
Sbjct: 2   DWAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGA 61

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
           V+  +  L    E+LT G V ++   + L   L  E G+ L D+ + T +R L  +  L 
Sbjct: 62  VERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCL-DDPLLP 120

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
               ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLP
Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 331 RPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           RP+ S   +   I  +          D + + S  +RSC+IA   KKLVVADL+ IE RV
Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240

Query: 389 LAWMAGEQWKLKAFETGEDL---------------------------------------- 408
           LAW+AGE  KL AF   +                                          
Sbjct: 241 LAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDI 300

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YA SF +AP  VTK QR IGKV ELALGY GG  AF   A+   ++L   A     
Sbjct: 301 YKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL 360

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
              P   ++A    +W + N             AC+  K+AWR  H  ++  W  L  A 
Sbjct: 361 --PPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAA 418

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT- 583
              I + +            + M+  +  L + LPSGR L Y     D     SY+ T  
Sbjct: 419 TDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHP 473

Query: 584 -TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
            TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D   F
Sbjct: 474 MTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAF 533

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           NA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873]
 gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873]
          Length = 881

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/635 (13%), Positives = 185/635 (29%), Gaps = 163/635 (25%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGEALKLS 119
            E+ ++  ++H+      VL+     DI        T + +       +           
Sbjct: 384 FEDKNIKKISHDIKNVYVVLRKY---DIDAKNFIFDTKIASYLLEPSKS----------- 429

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                        +   E        N  +  E  ++   YC        EI+++L+   
Sbjct: 430 ------------DYILREIILEKLSINIDDSDEECKIKETYCIK------EIYEKLQKEI 471

Query: 180 SK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +          E  L  +  ++   G+ VD      + +    E   L++E+  L    
Sbjct: 472 KEANMEELFYNVELPLTKVLASMECEGFKVDKDRLTEIGEKFKAEIKMLEKEIHKLAG-E 530

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             + +  ++L   LF +  L +   T+   +T   VL   K   P   ++ + R   ++ 
Sbjct: 531 DFNIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIISKIIDYRQ-ITKL 589

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
               +  L   ++ DG++  +      + TGR S      QN+P       E        
Sbjct: 590 DSTYVEGLKHVIDEDGKIHSSFNQTVTT-TGRLSSTEPNLQNIPIKHEMGRE-------- 640

Query: 347 PTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                            +R   +A+ E   +  AD + IE RVLA +A ++  + AF+  
Sbjct: 641 -----------------IRKVFVANNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHH 683

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +D++  T +  F V   +VT   R+  K +   +                          
Sbjct: 684 KDIHTITASEVFRVPVEEVTPLMRSNAKAVNFGIV------------------------- 718

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                      + +        +     +  ++  V +  +++ 
Sbjct: 719 -------------------YGIGAFSLSKDINVSRKEAKEYIDTYFSRYPNVKKYIDDII 759

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
              EQ                          +  +     R     ++ +          
Sbjct: 760 NKSEQ--------------------------DGFVTTIMNRKRYIPEIQSRN---RIVRS 790

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDT 639
              R            +Q  + DI+   M++  +          ++L VHDE++      
Sbjct: 791 FGERLAMNTP------IQGSAADIIKLAMVHVYEELIKRNLKSTLILQVHDELILNVYKD 844

Query: 640 DEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +       +   M    +    +PL+A+      +
Sbjct: 845 ELEEVKQMVVEKMEGVMNLL--VPLEADVNIGITW 877


>gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
 gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM
           12042]
          Length = 900

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 99/666 (14%), Positives = 183/666 (27%), Gaps = 151/666 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV---LKACF 84
             V   A  + D               + L   L      IV     ++      L    
Sbjct: 362 ADVHGLALAYQDQ-AVYIPIEDVRQ-DEALLAYLAGEKTKIV-----YDVKACLHLADGA 414

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            L I   +    ++ A                  S QK+ E   L       E +     
Sbjct: 415 GLTINGMKI-DAMIAAFLCDSTLT----------SDQKIREKFGLTETVTMDEVYGKPGK 463

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTIND 194
              P      +L  + C   + +   ++K  EP   +             L  +   +  
Sbjct: 464 MKLP----EPQLQRQLCAQKIQLIDALWKDSEPKLKEMEIVSLFYDVEMPLAAVLYKMEK 519

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +D      + +        L   + +       +    ++L   LF + GL     
Sbjct: 520 EGIRIDSQTLDDIARQTQARLDALTDAIYAAAG-ETFNINSPKQLGEVLFDKLGLPASGK 578

Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
             +T   VL     + P    +   R +  +        L + ++ DGR+        A+
Sbjct: 579 KRSTSADVLEKLLGVHPIIADLLEFR-KYQKLYSTYAEGLKKYIHPDGRIHTIYNQC-AT 636

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
           +TGR S      QN+        E                         VR   + SEG 
Sbjct: 637 QTGRLSSTEPNLQNISVRDEESRE-------------------------VRKAFLPSEGN 671

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            LV +D + IE R+LA MA EQ  L AF    D++  T +  F +   QV    R   K 
Sbjct: 672 VLVASDYSQIELRMLAHMADEQGLLDAFRHAVDIHTKTASDVFQIPLDQVDAKHRRQAKA 731

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   +                G++    +  +                            
Sbjct: 732 VNFGIV--------------YGISDFGLSQQLDI-------------------------- 751

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                    +   + + Q +  +S+  +++        E+G                   
Sbjct: 752 ----SRAQAKEFIERYLQSYPNISKYMDQVISF---CQEHGYTATML------------- 791

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                     GR     ++ +         +   R            +Q  + D++   M
Sbjct: 792 ----------GRRREVPEIHDKNYMTREFGK---RAAMNAP------IQGSAADLIKLAM 832

Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEG 667
           +   KA         ++L VHDE++ +   ++     +++   M         +PL AE 
Sbjct: 833 IRIDKAISEKGLQSKMILQVHDELIFDALPSELDALCAIIQEGMEHAME--LKVPLVAET 890

Query: 668 YESKRY 673
                +
Sbjct: 891 KIGDTW 896


>gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
 gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745]
          Length = 887

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/625 (14%), Positives = 185/625 (29%), Gaps = 130/625 (20%)

Query: 56  VLKEALENTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            +K  LE+  + I   N  F+     V      + +        L+ +           +
Sbjct: 366 KIKAILEDPKIKI---NV-FDSKRTYVGLHRLGIKLTAVN-FDILLQSYLLDTNDNSNDL 420

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           G+         +        + KG            NH         +    +       
Sbjct: 421 GQLAH--EHDYDAIDTDDDVYGKGAKRAVPEQTELFNHLARKLAAINFLGKQLDQELVKN 478

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++       E  L  +   +   G  VD    + +        ++++  + +       +
Sbjct: 479 EQNNLYWDIELPLAIVLAKMEISGIKVDRNRLNQMQSEFTERLSEIETNIYNEAG-EEFN 537

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+   +T   VL   +  +P    + N R   S+    
Sbjct: 538 LNSPKQLGVVLFEKLKLPIIKKTKTGYSTAVDVLEKLQGESPIIDNILNYR-TLSKIKST 596

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            ++ L++ +++      T      ++TGR S      QN+P       +           
Sbjct: 597 YVDGLLKVIHTTDEKVHTTYVQTLTQTGRLSSIDPNLQNIPVRIEEGRK----------- 645

Query: 350 ITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +R   +   EG  ++ +D + IE RVLA + G+Q   +AF+ GED+
Sbjct: 646 --------------IRQAFVPAREGWHILSSDYSQIELRVLAHITGDQNLQEAFKNGEDI 691

Query: 409 YVTTYARSFN-VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           + TT  + F     ++VT + R   K +   + Y            +  + ++       
Sbjct: 692 HATTAVKIFGLKDASEVTPNIRRQAKAVNFGIVYGIS-----DYGLSQNIGISRKDAKKF 746

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
             +  +E+   + +     +   E    +                               
Sbjct: 747 IETYFKEFPGVKKYIDESVQLAKEQGYVETI----------------------------- 777

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                       A +RR +P +                           R+ +NT     
Sbjct: 778 ------------AHRRRYLPDINSSSFNLRSF---------------AERTAMNT----- 805

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDE 641
                         +Q  + DI+   M++             ++L VHDE++ E PD + 
Sbjct: 806 -------------PIQGSAADIIKIAMIDMENELEKRNLKSRMLLQVHDELIFEVPDEEM 852

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKA 665
                L   +M S       +PLK 
Sbjct: 853 TLMKELVPKVMDSAVK--LDVPLKV 875


>gi|299138180|ref|ZP_07031360.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8]
 gi|298600110|gb|EFI56268.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8]
          Length = 1022

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/701 (13%), Positives = 191/701 (27%), Gaps = 176/701 (25%)

Query: 33   FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-H 91
                                    ++EAL +  +    H+      VL+A    DI +  
Sbjct: 436  LGLAVTAGHAIEISLDTPG-----IREALADPALPKQVHDLK---AVLRALQPHDITLAG 487

Query: 92   RWICTLVLARSNGLPSALKAV--------GEALKLSSQKMEEG--KELIARFCKGETHEC 141
                 ++ +       +   +          AL     K      K L            
Sbjct: 488  PITDVMLQSYLLNPTHSSHTLIDLAARTTSRALTHQPTKDNPNDPKRLPEAAAAIARLAV 547

Query: 142  LYDRNKPNHREAWRLFGEYCKGDVTVT--------------------------REIFKRL 175
                          +  +       +T                            +    
Sbjct: 548  TLGEQLAEVPTTHVIPKDDPALGGAITTEMLFADKAQVEGARAQGAASASSGPLALNPEA 607

Query: 176  EPLSSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
             PL+            +  L  +   +   G  VD  L   ++  + V    L + + + 
Sbjct: 608  SPLNEHSTLAEVYEQLDLPLVSVLLQMEQTGVRVDSNLLREMSSRLAVTIDDLAERIYAS 667

Query: 226  TYGLVSSSRCLEKLKTWLFLETGLHLEDL---TE--TTCQRVLSSNKKLTPQAIQVFNNR 280
            +     +    ++L   LF +  L         +  +T Q +L        +   +    
Sbjct: 668  SGHR-FNINSPKQLGDVLFNKMDLPKPMKHGKGKVISTAQDILEDLA-QHHEVPAIVLEY 725

Query: 281  MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             +  +     L+ L    + +GR+  T   +G + TGR S      QN+P  +    E  
Sbjct: 726  RQLQKLKSTYLDQLPSLTDVNGRIHTTFNQVG-TATGRLSSINPNLQNIPIRTAVGRE-- 782

Query: 341  QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                   +R+  IA+ G  L+ AD + IE R++A  + +   L 
Sbjct: 783  -----------------------IRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLD 819

Query: 401  AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            A+ TG+D++  T A  F V  A + K+ RA  K +   + Y              G++  
Sbjct: 820  AYRTGKDIHTLTAAEVFEVDAATMDKETRARAKAVNFGIVY--------------GISPF 865

Query: 461  TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
              A  +  +                                  +   + +  ++  V+  
Sbjct: 866  GLAAQLGIDQ------------------------------KVAKAYIERYFDRYKGVATF 895

Query: 521  WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +  +   +                          +  +    GR     D+ +     
Sbjct: 896  IEQTLETVRR--------------------------DQAVKTAFGRVRPIPDIQSRNP-- 927

Query: 581  NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                    R            +Q  + D++   M+    A         + L VHDE++ 
Sbjct: 928  -NQRGFAERTA------VNTPLQGTAADLIKIAMLRIDAAIRTRNLRSLMTLQVHDELLF 980

Query: 635  E-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            +  P+  +    ++   M S   +   +P+ AE      +R
Sbjct: 981  DVVPEEADEMQELVKTEMESAAEF--SVPIVAEVGLGDNWR 1019


>gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
 gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196]
          Length = 924

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/657 (12%), Positives = 189/657 (28%), Gaps = 155/657 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-H 91
                +     +            L+  LE+  +    H+     + L+A    DI +  
Sbjct: 405 LGVAVEAGTALVLPLST-------LRPLLEDATIPKRVHDLK---STLRALSTQDIALRG 454

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                ++ +           + +               +    +        +   P   
Sbjct: 455 AVDDVMLYSYLLNPTHTTHRLSD---------------VTARFRNHALRETGENELPEAA 499

Query: 152 EAWRLFGEYCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
            A        + +V    T +++         +  L  +   +   G  +D  +   L  
Sbjct: 500 HAIFTLAPTLREEVEREDTLKVY------EQIDLPLAPVLLAMEQHGVRIDSEMLRALGD 553

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE--TTCQRVLS 264
            +  +  ++ Q++         +    ++L   LF +  L         +  +T Q VL 
Sbjct: 554 RLAADMHRVSQQIYEQAGHR-FNINSPKQLGDVLFNKMNLPRPLKYGKGKVISTAQDVLE 612

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                     ++     + ++     +++L    +S GR+  T   +G + TGR S    
Sbjct: 613 ELAA-HNDVPRLVLEFRQLAKLKSNYVDSLPLLADSQGRVHTTFHQVG-TATGRLSSTNP 670

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  +    E                         +R+  IA+ G+KL+ AD + I
Sbjct: 671 NLQNIPVRTALGRE-------------------------IRAAFIAAPGRKLLSADYSQI 705

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A  + +   L A+ TG+D++  T +  F VAP  + K+ R   K +   +     
Sbjct: 706 ELRLMAHFSEDPLLLNAYSTGQDIHTLTASEVFGVAPEAMDKETRNRAKAVNFGIV---- 761

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G++    A  +  +                                   
Sbjct: 762 ----------YGISPFGLAQQLGIDQ------------------------------HEAR 781

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           +    +  ++  V    + + +   +                             +    
Sbjct: 782 QYIDTYFARYQGVRAYIDRVLEQTRR--------------------------EQRVRTLF 815

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD- 623
           GR     D+ +  +          R            +Q  + D++   M+         
Sbjct: 816 GRVRPIPDIQSRNA---NQRGFAERTA------VNTPLQGTAADLIKLAMIRIDARIKKK 866

Query: 624 -----IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
                + L VHDE++ + P+ +      L    M         +P+ A+    + +R
Sbjct: 867 NLQTLMTLQVHDELLFDVPEAEVEVVEDLVRHEMEHVVE--LKVPIVADIGIGENWR 921


>gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden]
 gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden]
          Length = 865

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/664 (13%), Positives = 187/664 (28%), Gaps = 143/664 (21%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77
              +     D  +   +  + +  +   +  H      ++K       +  V     ++ 
Sbjct: 333 TIALYIDITDNTINSMSLSYKEGTILYINKEHITHALDLIKPLFSLDHILKV----MYDV 388

Query: 78  TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
             L      D  I  +   L+++ S         +   +  +  K +   E I       
Sbjct: 389 KTLFKIIQEDTNITAFDDILIMSYSLDAGLHDHTLKNIIIRNIDKHDITNENITASTLLS 448

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
            H  L                         T ++          E+ L  +   +   G 
Sbjct: 449 LHTALRRNLF--------------------TNQLCTIYY---RIEKPLINVLHNMEKIGI 485

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL--- 254
            +D ++   L+     + + L++++  L+     +     +L T LF + G+        
Sbjct: 486 MIDGSILDKLSSTFSDKISVLEEKIYKLSG-EEFNIASSRQLSTILFDKMGIKKGKKLSS 544

Query: 255 -TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            T +T   VL        +           ++      + L + ++++     T   + +
Sbjct: 545 GTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLAKQIDNNTSRVHTFYSMTS 604

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR S      QN+P  S                              +R+  IA  G
Sbjct: 605 TVTGRLSSSNPNLQNIPIRSEEGNA-------------------------IRNAFIAKSG 639

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            KL+ AD + IE R++A +A  Q    AF   +D+++ T  + FN     + K  R   K
Sbjct: 640 YKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNT--QNIDKKLRRKAK 697

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A                              
Sbjct: 698 SINF--------------GIIYGISPFGLAKQ---------------------------- 715

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                  +   +  + + + +  +     ++                             
Sbjct: 716 --LGITRSEASKHIENYFKSYPEIKSYIEDIKVYART----------------------- 750

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
              +       GR    +D+ +N   L   +    R             Q  S DI+   
Sbjct: 751 ---HGYTRTVFGRKCFIKDINSNNHALRNFS---ERAAVNAPL------QGTSADIIKMS 798

Query: 614 MMNA-TKAGY-DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYES 670
           M++   +     ++L VHDE++ E P+        ++  +M         +PLK +    
Sbjct: 799 MIHLFDRLKTGYMILQVHDELLFEVPEDHVDNTVKLIKEVMEGIVK--LSVPLKVDITIG 856

Query: 671 KRYR 674
             + 
Sbjct: 857 DNWG 860


>gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
 gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC
           33030]
          Length = 887

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/637 (14%), Positives = 192/637 (30%), Gaps = 146/637 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+  LE+       H++     +L     + +       T + A           +G+  
Sbjct: 372 LQTWLESAA-PKYLHSAKETFHML-RGRGITLRGIA-HDTAIAAYLLRPGQRTYDLGDVY 428

Query: 117 -KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT--REIFK 173
            +   +++  G + ++   +             +   A     E    D+      E++ 
Sbjct: 429 QRHLQRQLTTGSDQLSLLDEDT--------TLVDSAAAILELAEKLTEDLRAINSYELYA 480

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E  L  +   + D G  VD+ +     + +  + T  +    SL      + 
Sbjct: 481 ------DLELPLVTILAEMEDTGIAVDMDVLEEQLKEIAQKVTDAEDTARSLVDEPDLNL 534

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK--KLTPQAIQVFNNRMRASRSAV 288
              ++L   LF +  L     T+   +T  + + +       P   Q+  +R    +   
Sbjct: 535 SSPKQLSVVLFDKLELPKTKKTKTGYSTAAKEIETLAAKNPHPFLDQLLAHR-EWQKLKS 593

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L++ ++ DGR+  T     A  TGR S      QN+P  + +             
Sbjct: 594 T-IEGLIKTVHDDGRIHTTFNQTVA-STGRLSSTEPNLQNIPVRTEAGRR---------- 641

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +RS     +G + L+ AD + IE RV+A ++ +   ++A++ GED
Sbjct: 642 ---------------IRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKEGED 686

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+    +R F+V    VT + R   K M   L                GL+         
Sbjct: 687 LHNFVGSRVFDVPIDDVTPELRRRVKAMSYGLV--------------YGLS--------- 723

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    + +        +++ +++ Q+   V    +E+ + 
Sbjct: 724 ---------------------AYGLSNQLGIPAGEAKKIMESYFQRFGGVKRYLDEVVEQ 762

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +                          +       GR     ++ ++           
Sbjct: 763 ARR--------------------------DGYTSTVFGRRRYLPELTSDN---RVARENA 793

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA----------GYDIVLTVHDEIVCETP 637
            R            +Q  + DI+   M+    A             ++L VHDE+V E  
Sbjct: 794 ERAALNAP------IQGTAADIIKVAMIRVDAALNDASRDQPFQSRVLLQVHDELVVEIA 847

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             +      +    M    +    +PL+        +
Sbjct: 848 PGELEQVQAIVEEEMDRAIT--LRVPLEVSAGTGTNW 882


>gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
 gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2]
          Length = 873

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 105/658 (15%), Positives = 194/658 (29%), Gaps = 149/658 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERTVL-KACFN 85
             +  +          L      P +     + LE+++V   VA     +  VL     N
Sbjct: 344 ARITAWGIAVGGESFILNWTDAAPEVRLAFSQLLEDSEVPKQVA-----DSKVLYSLLLN 398

Query: 86  LDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +I +    +   + A                    + +E  KE I            + 
Sbjct: 399 EEIILRGVSLDIGLAAYLINPTRN----------KFEPLELVKEYI-------PGAGEFA 441

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                     ++   Y +     T E       L   E+ L  +   +  +G  VDV   
Sbjct: 442 NLAEEASALAQVADSYKE-----TLEELGLSALLHEMEEPLSPILAEMEKQGIAVDVQRL 496

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
               + + VE  +L+QE+ +       +    ++L   LF + GL     T+   +T   
Sbjct: 497 QEFGRELTVELQRLEQEIYADAG-ETFNINSPQQLGHILFEKLGLPPMKKTKTGYSTDAD 555

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
            L   +       +V + R   S+     +N L+  ++ +GR+  T Q    + TGR S 
Sbjct: 556 TLEELRDQHSIVERVLDYRQ-LSKLMSTYVNGLLAQIH-EGRVHTTFQQ-TVTATGRLSS 612

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P                                 +R       EG  L+ AD
Sbjct: 613 TEPNLQNIPIRLELGR-------------------------LLRKVFTPTQEGWVLLSAD 647

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA  + ++   ++F   +D++  T +  F +  A+VTKD R   K +     
Sbjct: 648 YSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAVNF--- 704

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          GL                                     +     
Sbjct: 705 -----------GLIYGLTDFGL------------------------------GRDLGVPR 723

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              +   + +  ++  V      L +   +  E G+                        
Sbjct: 724 KEAKTYIETYFHRYEGVKRY---LEEIVVKAKEEGQVRTLLN------------------ 762

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                R     ++ +             R            +Q  + DI+   M+   +A
Sbjct: 763 -----RLRRIPELRHPNRVQRQF---GERIAMNTP------IQGTAADIMKLAMLGVAEA 808

Query: 621 ----GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 +++L VHDE+V E  P+  E  A ++   M S       +PL A+      +
Sbjct: 809 LKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESAFP--LSVPLIADCKTGPNW 864


>gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
 gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf]
 gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657]
          Length = 875

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/680 (14%), Positives = 203/680 (29%), Gaps = 153/680 (22%)

Query: 17  TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64
            +  +  Y E   ++LF+       +      V   D             +V KE  E+ 
Sbjct: 322 KENDLYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLKNTKEQFIEVCKEIFESK 381

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  + +++   RT+L+    ++    +     + A           V +  ++SS   E
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIK-FDINLAAYLIDP------VRKEYEISSLASE 433

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
              + I R  +    + +                E    +  +   ++         EQ 
Sbjct: 434 YLFKNINREDEILKIKEVNM------MPKLYKVLEEKIKEQDMEELLY-------KVEQP 480

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L      +   G+ VD  +   L +    E      E+ S++     +    ++L   LF
Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EEFNINSPKQLGKILF 539

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +  L +   T+   +T   VL   +   P   ++   R   ++     +  L  A++ D
Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G++         + TGR S      QN+P       E                       
Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634

Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V 
Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +VT   R   K +   + Y              G+   + +                 
Sbjct: 693 IEEVTPLMRGNAKAVNFGIVY--------------GIGDFSLSQ---------------- 722

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                         +        ++   A+ +++  V      L    E+ +E G     
Sbjct: 723 --------------DLNITRKEAKQYIDAYLERYPNVKLY---LENIVEEAVEKGYVNTI 765

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                    R    ++V ++   +        R           
Sbjct: 766 LN-----------------------RRRYIKEVKSSNKIVKAA---GERLAMNSP----- 794

Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTS 653
            +Q  + DI+   M+N  +          I+L VHDE++      +      ++   M  
Sbjct: 795 -IQGSAADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKKEMEQ 853

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                 G  L  +      +
Sbjct: 854 VLELKVG--LDVDINIGNNW 871


>gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51]
 gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 873

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/658 (15%), Positives = 194/658 (29%), Gaps = 149/658 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERTVL-KACFN 85
             +  +          L      P +     + LE+++V   VA     +  VL     N
Sbjct: 344 ARITAWGIAVGGESFILNWTDAAPEVRLAFSQLLEDSEVPKQVA-----DSKVLYSLLLN 398

Query: 86  LDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +I +    +   + A                    + +E  KE I            + 
Sbjct: 399 EEIILRGVSLDIGLAAYLINPTRN----------KFEPLELVKEYI-------PGAGEFA 441

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                     ++   Y +     T E       L   E+ L  +   +  +G  VDV   
Sbjct: 442 NLAEEASALAQVADSYKE-----TLEELGLSALLHEMEEPLSPILAEMEKQGIAVDVQRL 496

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
               + + VE  +L+QE+ +       +    ++L   LF + GL     T+   +T   
Sbjct: 497 QEFGRELTVELQRLEQEIYADAG-ETFNINSPQQLGHILFEKLGLPPMKKTKTGYSTDAD 555

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
            L   +       +V + R   S+     +N L+  ++ +GR+  T Q    + TGR S 
Sbjct: 556 TLEELRDQHSIVERVLDYRQ-LSKLMSTYVNGLLAQIH-EGRVHTTFQQ-TVTATGRLSS 612

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P                                 +R       EG  L+ AD
Sbjct: 613 TEPNLQNIPIRLELGR-------------------------LLRKVFTPTQEGWVLLSAD 647

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA  + ++   ++F   +D++  T +  F +  A+VTKD R   K +     
Sbjct: 648 YSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAVNF--- 704

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          GL                                     +     
Sbjct: 705 -----------GLIYGLTDFGL------------------------------GRDLGVPR 723

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              +   + +  ++  V      L +   +  E G+                        
Sbjct: 724 KEAKTYIETYFHRYEGVKRY---LEEIVVKAKEEGQVRTLLN------------------ 762

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                R     ++ +             R            +Q  + DI+   M+   +A
Sbjct: 763 -----RLRRIPELRHPNRVQRQF---GERIAMNTP------IQGTAADIMKLAMLGVAEA 808

Query: 621 ----GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 +++L VHDE+V E  P+  E  A ++   M S       +PL A+      +
Sbjct: 809 LKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESAFP--LSVPLIADCKTGPNW 864


>gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel]
 gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel]
          Length = 860

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/660 (13%), Positives = 186/660 (28%), Gaps = 143/660 (21%)

Query: 21  ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80
           +     D  +   +  + +  +   +  H      ++K       +  V     ++   L
Sbjct: 331 LYIDITDNTINSMSLSYKEGTILYINKEHIIHALDLIKPLFSLDHILKV----MYDVKTL 386

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                 D  I  +   L+++ S  +      +         K    +         E   
Sbjct: 387 FKIIQEDTNITAFDDILIMSYSLDVGLHDHTL---------KNIIIRNTDKHDITNENIT 437

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
                +  +      LF             I+ R+E           +   +   G  +D
Sbjct: 438 ASTLLSL-HTALRRNLFTNQLCT-------IYYRIEKPL------INVLHNMEKIGIMID 483

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL----TE 256
            ++   L+     + + L++++  L+     +     +L T LF + G+         T 
Sbjct: 484 GSILDKLSSTFSDKISVLEEKIYKLSG-EEFNIASSRQLSTILFDKMGIKKGKKLSSGTY 542

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL        +           ++      + L + ++++     T   + ++ T
Sbjct: 543 STDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLAKQIDNNTSRVHTFYSMTSTVT 602

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  S                              +R+  IA  G KL
Sbjct: 603 GRLSSSNPNLQNIPIRSEEGNA-------------------------IRNAFIAKSGYKL 637

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A +A  Q    AF   +D+++ T  + FN     + K  R   K + 
Sbjct: 638 ISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNT--QNIDKKLRRKAKSIN 695

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    A                                 
Sbjct: 696 F--------------GIIYGISPFGLAKQ------------------------------L 711

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
               +   +  + + + +  +     ++                                
Sbjct: 712 GITRSEASKHIENYFKSYPEIKSYIEDIKVYART-------------------------- 745

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
           +       GR    +D+ +N   L   +    R             Q  S DI+   M++
Sbjct: 746 HGYTRTVFGRKCFIKDINSNNHALRNFS---ERAAVNAPL------QGTSADIIKMSMIH 796

Query: 617 A-TKAGY-DIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +     ++L VHDE++ E P+        ++  +M         +PLK +      +
Sbjct: 797 LFDRLKTGYMILQVHDELLFEVPEDHVDNTVKLIKEVMEGIVK--LSVPLKVDITIGDNW 854


>gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
 gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra]
          Length = 875

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/680 (14%), Positives = 203/680 (29%), Gaps = 153/680 (22%)

Query: 17  TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64
            +  +  Y E   ++LF+       +      V   D             +V KE  E  
Sbjct: 322 KENDLYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEMFEGK 381

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  + +++   RT+L+    ++    +     + A           V +  ++SS   E
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIK-FDINLAAYLIDP------VRKEYEISSLASE 433

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
              + I R  +    + +                E    +  +   ++         EQ 
Sbjct: 434 YLFKNINREDEFLKIKEVNI------MPNLYKVLEEKIKEQDMEELLY-------KVEQP 480

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L      +   G+ VD  +   L +    E      E+ S++     +    ++L   LF
Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EEFNINSPKQLGKILF 539

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +  L +   T+   +T   VL   +   P   ++   R   ++     +  L  A++ D
Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G++         + TGR S      QN+P       E                       
Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634

Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V 
Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +VT   R+  K +   + Y              G+   + +                 
Sbjct: 693 IEEVTPLMRSNAKAVNFGIVY--------------GIGDFSLSQ---------------- 722

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                         +        ++   A+ +++  V      L    E+ +E G     
Sbjct: 723 --------------DLNITRKEAKQYIDAYLERYPNVKLY---LENIVEEAVEKGYVSTI 765

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                    R    ++V ++   +        R           
Sbjct: 766 LN-----------------------RRRYIKEVKSSNKIVKAA---GERLAMNSP----- 794

Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTS 653
            +Q  + DI+   M+N  K          I+L VHDE++      +      ++   M  
Sbjct: 795 -IQGSAADIIKLAMVNVHKKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKKEMEQ 853

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                 G  L  +      +
Sbjct: 854 VLELKVG--LDVDINIGNNW 871


>gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 891

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALNSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 887

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/664 (14%), Positives = 198/664 (29%), Gaps = 147/664 (22%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERT---VLKACFNLDIP 89
            F              + +M   + + L +T +T  V     F+     V      + + 
Sbjct: 343 GFAIGADDHWYISRDVELLMQPTVADLLSSTTITKDV-----FDMKRTTVGLNRLGIQL- 396

Query: 90  IHRWICTLVLARSNGLPSA---LKAVGEALK---LSSQKMEEGKELIARFCKGETHECL- 142
                  L+++           L ++ E      L S +   GK +     + +      
Sbjct: 397 GKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSH 456

Query: 143 -YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
              +         +L  E    +     +++         E+ +  +   +   G  VD 
Sbjct: 457 LARKLAAIASLKPQLLKELAANEQD---QLYD------DIEKPMANVLAQMEIAGITVDS 507

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
           +    +        ++++Q +         +    ++L   LF E  L +   T+   +T
Sbjct: 508 SRLKAMGSQFTERLSEIEQTIYQEAG-EEFNINSPKQLGHILFEEMKLPVIKKTKTGYST 566

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL       P    +   R   S+     +  L++A++S  +   T      ++TGR
Sbjct: 567 AVDVLEKLAPEAPIVANILQYRQ-ISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGR 625

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377
            S      QN+P       +                         +R   + S EG ++ 
Sbjct: 626 LSSVDPNLQNIPVRLEEGRK-------------------------IRQAFVPSHEGWQIF 660

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436
            +D + IE RVLA +  ++    AF+ G+D++  T  R F++    +VT + R   K + 
Sbjct: 661 SSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVN 720

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y            +  + +         ++  +E+   + +   + +   +    +
Sbjct: 721 FGIVYGIS-----DYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVE 775

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                                                        +RR +P +  K    
Sbjct: 776 TIS-----------------------------------------HRRRYLPDINSKSFNQ 794

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                               R+ +NT                   +Q  + DI+   M+ 
Sbjct: 795 RSF---------------AERTAMNT------------------PIQGSAADIIKIAMIK 821

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P  +      L   +M S    A  +PLK E + 
Sbjct: 822 MQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEKLVPSVMDSAVQLA--VPLKVESHY 879

Query: 670 SKRY 673
              +
Sbjct: 880 GDTW 883


>gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
 gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704]
          Length = 871

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/667 (12%), Positives = 178/667 (26%), Gaps = 153/667 (22%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE----NTDVTIVAHNSYFERTV 79
           +A    +      F    V         +    L E LE    +         + F+   
Sbjct: 337 FAGQAGIDGIGLCFSKKDVYCIRAGQG-IELSWLLEQLEGVAKDAGRF-----AMFDIKE 390

Query: 80  LKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                 +           V A            + V         + +    + A +   
Sbjct: 391 ALEHIRIA-RQDNCFDVTVAAYLLNPLKSNYTYEDVAREQLNLIIEDKLDAWMKACYEAY 449

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
             +              W+   E C  D      +F         E  L +    +   G
Sbjct: 450 TAYAASG--------ILWKRLKE-CLMD-----RLFM------DVEMPLVFTLYDMEVNG 489

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             V+          +  +  +L++++         +    ++L   LF    +     T+
Sbjct: 490 VRVEAEALKYYGDQLGAKIVELEKDIYEEAG-ENFNINSPKQLGVVLFENMKIPGGKKTK 548

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL       P   ++   R   ++      + L   +  DGR+         
Sbjct: 549 TGYSTAADVLEKLAPDYPIIAKILEYRQY-TKLKSTYADGLANYIREDGRIHSKFNQ-TI 606

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR S      QN+P                                 +R   I  +G
Sbjct: 607 TATGRLSSTEPNLQNIPIRVELGR-------------------------LIRKVFIPEDG 641

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
              V AD + IE RVLA  +G+   ++A++  +D++  T ++ F++   +VT  QR   K
Sbjct: 642 FVFVDADYSQIELRVLAHCSGDSHLIEAYKEKKDIHRITASQVFHIPFDEVTDQQRRNAK 701

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    +  +                           
Sbjct: 702 AVNF--------------GIVYGISSFGLSQDLSI------------------------- 722

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                      +  + +   +  +    ++  +  ++                       
Sbjct: 723 -----TRKEASKYIEDYFTAYPGIKIFLDDTVKHAKE----------------------- 754

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 ++   GR     ++ ++     +      R            +Q  + DI+   
Sbjct: 755 ---MGYVVTLFGRRRPVPELSSSNYMQRSF---GERVAMNAP------IQGTAADIIKIA 802

Query: 614 M------MNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           M      +   K    +VL VHDE++ E    +      +    M    S    +PL+ +
Sbjct: 803 MTGVGRRLKEQKMKSRLVLQVHDELLVEAYKPELDQVKKILKEEMEQAAS--LDVPLEID 860

Query: 667 GYESKRY 673
            +  + +
Sbjct: 861 MHTGENW 867


>gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 883

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/643 (14%), Positives = 189/643 (29%), Gaps = 147/643 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + +K  LE+ ++  + ++   E   L    ++ +   ++    +        +    + E
Sbjct: 360 EKIKHILEDENIEKIGYDIKAEYLSLLPY-DISLRGIKY-DLKIAKYLLSPDNNSYDISE 417

Query: 115 ---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-----Y-----C 161
                 LS  +  E       F KG+  + +    K    E +    +     Y      
Sbjct: 418 IAMEYGLSHLQSHE-----EFFGKGKKEKVINPFTKKEVEEYYMKVLDIVDSSYDIVMTA 472

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             D  +T       +     E  L  +   +   G  +D                +L+ E
Sbjct: 473 IRDSEMT-------KLFEDVEIPLITVLSDMEYIGVAIDKKELENQKIEFAQHILRLESE 525

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           +  L      +    ++L   LF +  L     T+   +T   VL     +     ++ +
Sbjct: 526 IYELAG-EEFNINSPKQLGVILFEKLNLPPVKKTKTGYSTDAAVLEELSDMHDIIGKIIS 584

Query: 279 NRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            R   ++     +  L+  +N +  R+  +     A+ TGR S      QN+P       
Sbjct: 585 YRQY-TKLQSTYVEGLLNIINPNTERIHSSFNQTIAA-TGRISSTEPNLQNIPVRLEIGR 642

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   IA +G  LV +D + IE RVLA ++ E+ 
Sbjct: 643 -------------------------NLRKAFIARQGCVLVDSDYSQIELRVLAHISDEEA 677

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF    D++  T +  F V  ++VTK+QR   K +   + Y            +  L
Sbjct: 678 LIQAFSKDADIHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVYG-----ISDFGLSNNL 732

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                                          +  K +  ++  +
Sbjct: 733 G---------------------------------------ITKKKAGQYIKTYLDRYKNI 753

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +   ++        E+G                             GR      +    
Sbjct: 754 EKYMQDV---VAFGEEHGYVTTIL-----------------------GRRRSIPQLKQKN 787

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
             +    ++L              +Q  + DI+   M+              ++L VHDE
Sbjct: 788 IMIKNLGKRL---------AMNTPIQGSAADIIKIAMVRVSNRLKRENLKSKLILQVHDE 838

Query: 632 IVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++ E    ++     +L   M+    +   + LK +      +
Sbjct: 839 LIIEATADEQDYIKALLQEEMSKA--YDMKVELKVDINVGNSW 879


>gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 882

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/664 (14%), Positives = 198/664 (29%), Gaps = 147/664 (22%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERT---VLKACFNLDIP 89
            F              + +M   + + L +T +T  V     F+     V      + + 
Sbjct: 338 GFAIGADDHWYISRDVELLMQPTVADLLSSTTITKDV-----FDMKRTTVGLNRLGIQL- 391

Query: 90  IHRWICTLVLARSNGLPSA---LKAVGEALK---LSSQKMEEGKELIARFCKGETHECL- 142
                  L+++           L ++ E      L S +   GK +     + +      
Sbjct: 392 GKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSH 451

Query: 143 -YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
              +         +L  E    +     +++         E+ +  +   +   G  VD 
Sbjct: 452 LARKLAAIASLKPQLLKELAANEQD---QLYD------DIEKPMANVLAQMEIAGITVDS 502

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
           +    +        ++++Q +         +    ++L   LF E  L +   T+   +T
Sbjct: 503 SRLKAMGSQFTERLSEIEQTIYQEAG-EEFNINSPKQLGHILFEEMKLPVIKKTKTGYST 561

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL       P    +   R   S+     +  L++A++S  +   T      ++TGR
Sbjct: 562 AVDVLEKLAPEAPIVANILQYRQ-ISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGR 620

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377
            S      QN+P       +                         +R   + S EG ++ 
Sbjct: 621 LSSVDPNLQNIPVRLEEGRK-------------------------IRQAFVPSHEGWQIF 655

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436
            +D + IE RVLA +  ++    AF+ G+D++  T  R F++    +VT + R   K + 
Sbjct: 656 SSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVN 715

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y            +  + +         ++  +E+   + +   + +   +    +
Sbjct: 716 FGIVYGIS-----DYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVE 770

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                                                        +RR +P +  K    
Sbjct: 771 TIS-----------------------------------------HRRRYLPDINSKSFNQ 789

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                               R+ +NT                   +Q  + DI+   M+ 
Sbjct: 790 RSF---------------AERTAMNT------------------PIQGSAADIIKIAMIK 816

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P  +      L   +M S    A  +PLK E + 
Sbjct: 817 MQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEKLVPSVMDSAVQLA--VPLKVESHY 874

Query: 670 SKRY 673
              +
Sbjct: 875 GDTW 878


>gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
 gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1]
 gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1]
          Length = 882

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/664 (14%), Positives = 198/664 (29%), Gaps = 147/664 (22%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERT---VLKACFNLDIP 89
            F              + +M   + + L +T +T  V     F+     V      + + 
Sbjct: 338 GFAIGADDHWYISRDVELLMQPTVADLLSSTTITKDV-----FDMKRTTVGLNRLGIQL- 391

Query: 90  IHRWICTLVLARSNGLPSA---LKAVGEALK---LSSQKMEEGKELIARFCKGETHECL- 142
                  L+++           L ++ E      L S +   GK +     + +      
Sbjct: 392 GKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSH 451

Query: 143 -YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
              +         +L  E    +     +++         E+ +  +   +   G  VD 
Sbjct: 452 LARKLAAIASLKPQLLKELAANEQD---QLYD------DIEKPMANVLAQMEIAGITVDS 502

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
           +    +        ++++Q +         +    ++L   LF E  L +   T+   +T
Sbjct: 503 SRLKAMGSQFTERLSEIEQTIYQEAG-EEFNINSPKQLGHILFEEMKLPVIKKTKTGYST 561

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL       P    +   R   S+     +  L++A++S  +   T      ++TGR
Sbjct: 562 AVDVLEKLAPEAPIVANILQYRQ-ISKIQSTYVVGLLDAIHSADQKVHTRYLQTLTQTGR 620

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377
            S      QN+P       +                         +R   + S EG ++ 
Sbjct: 621 LSSVDPNLQNIPVRLEEGRK-------------------------IRQAFVPSHEGWQIF 655

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVME 436
            +D + IE RVLA +  ++    AF+ G+D++  T  R F++    +VT + R   K + 
Sbjct: 656 SSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVN 715

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y            +  + +         ++  +E+   + +   + +   +    +
Sbjct: 716 FGIVYGIS-----DYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVE 770

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                                                        +RR +P +  K    
Sbjct: 771 TIS-----------------------------------------HRRRYLPDINSKSFNQ 789

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                               R+ +NT                   +Q  + DI+   M+ 
Sbjct: 790 RSF---------------AERTAMNT------------------PIQGSAADIIKIAMIK 816

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ E P  +      L   +M S    A  +PLK E + 
Sbjct: 817 MQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVLEKLVPSVMDSAVQLA--VPLKVESHY 874

Query: 670 SKRY 673
              +
Sbjct: 875 GDTW 878


>gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 882

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 101/658 (15%), Positives = 193/658 (29%), Gaps = 146/658 (22%)

Query: 34  AFGFDDHP-----VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
           A  F D       VEL D   +    + L + L +       H +     +L       I
Sbjct: 348 AIAFVDQERHGLQVELGDLSAEDD--KALAQWLASDA-PKYFHEAKAAFHMLA---GRGI 401

Query: 89  PIHRW-ICTLVLARSNGLPSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +      T + A          A+ +   +   + +    E ++               
Sbjct: 402 ELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQKTLGAATEQLSLLD------------ 449

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
             +               ++   +     E  +  E  L  +   +   G  VDV +  T
Sbjct: 450 -DSSLVDQAAAILELAERLSAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILET 508

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
                  +  + ++    L      +    ++L+T LF    L     T+   +T  + +
Sbjct: 509 QKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEI 568

Query: 264 SSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
                    P    +  +R    +     L  L++ +  DGR+  T     A  TGR S 
Sbjct: 569 EQLAAKNPHPFLDHLLAHR-EYQKMKTT-LEGLIKTVQPDGRIHTTFNQTVA-STGRLSS 625

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380
                QN+P  + +                            +RS  I  +G  +L+ AD
Sbjct: 626 TEPNLQNIPVRTEAGR-------------------------QIRSVFIVGDGFDELMTAD 660

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RV+A ++ +   ++A++ GEDL+    +R F+V   QVT + R   K M   L 
Sbjct: 661 YSQIEMRVMAHLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLV 720

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          GL+    +                                     
Sbjct: 721 --------------YGLSAFGLSQQ------------------------------LGIPA 736

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              + + +++ ++   V +    L +   Q  ++G                         
Sbjct: 737 GEAKSIMESYFERFGGVKKY---LDEVVVQARKDGYTATL-------------------- 773

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
               GR     ++ ++            R            +Q  + DI+   M+   +A
Sbjct: 774 ---FGRRRYLPELNSDN---RLARENAERAALNAP------IQGTAADIIKVAMIRVDRA 821

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE+V E    +      +    M S       +PL+      K +
Sbjct: 822 LQGMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEVSAGAGKDW 877


>gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
 gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1]
          Length = 838

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 195/805 (24%), Positives = 305/805 (37%), Gaps = 140/805 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDH-PVELWDCVHDP------VMPQ 55
            IDFETRSP D+ K G   Y+ D     +  A+       V+LW   H          P 
Sbjct: 40  TIDFETRSPTDIKKRGGFLYSLDPATEAMCLAYHLPGETEVKLWHMAHPEFFIGESPAPT 99

Query: 56  VLKEALENTDVTIVAHNSYFERTVLK-----ACFNLDIPIHRWICTLVLARSNGLPSALK 110
            L   +      + AHN++FER +             I   +W C+   A +  LP +L+
Sbjct: 100 DLFAFILAGG-LVEAHNAFFERCIWTNIMIPRYGWPVIKPDQWRCSAAKASAMSLPRSLE 158

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGET-----------HECLYDRNKPNH--------- 150
               A+ L   K  EG++L+ + CK                    R              
Sbjct: 159 EAVAAMDLGIDKDMEGRKLMLKMCKPRKLRKAEMEKWMHDTGHKGRTPAYKSAGYPIVYH 218

Query: 151 --REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
              E      +YCK DV     +   L  LS +E E W +DQ +N RG   D+ +A    
Sbjct: 219 ETEEDLHRLWDYCKQDVFAEHALSLSLPELSEQELETWKMDQWLNWRGARFDLTMAKQAL 278

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
            +    R +L+  LE+LT   ++S+     +K WL  E  L L D    T +  L + ++
Sbjct: 279 SMASEWRKRLNSILEALTG--ITSATKRAAVKEWLVEEEDLDLPDTAADTLKHYLEN-EE 335

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLV-EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           L+ +A +V       ++++  K N ++ +A   D R R  + + GA  TGRW+G      
Sbjct: 336 LSARARRVLEIVRDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGAG-TGRWAGKGIQVH 394

Query: 328 NLPRPSRSHEELDQIITHLPTSITS-----DPDPLQIISDCVRSCVIASEGKKLVVADLA 382
           N P      ++ D+    +             D +  +S  +R  ++A EG++L+VAD A
Sbjct: 395 NFPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEEGRELMVADYA 454

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN------VAPAQVTKDQ------RA 430
            IEAR + W A +Q  L  F  G+D+Y       +       +A      D       R 
Sbjct: 455 AIEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQKKIAKDWTHPDYTLHSGCRQ 514

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL--------------------VKTNS 470
            GK   L LGY  G   F       G+  +    L                    + T  
Sbjct: 515 FGKQAILGLGYGMGYMTFLLTCRKYGITFSRAEVLRIMGPEKLDKTEEWVRKQLCLDTPP 574

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV---------KKAWRQKHSRVSELW 521
           +    E+A+ +    ++                + V            +R ++ +V  +W
Sbjct: 575 SKMTPEEAKRYSARKRQAARSRRRLIEAREDPAKIVHELALMKHTVDIYRARYPQVKAMW 634

Query: 522 NELHQAFEQT-----------------------------------IENGKAIIARKRRDV 546
           ++      Q                                    ++   +        +
Sbjct: 635 SDQEACAIQAVKSLPTPEELTQLHDNGIELPREVFTASDPVECGKVKWYMSEARTVVDAL 694

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY--------------LNTTTRQLTREYT 592
                 K    L   LPSGR + Y D     +               ++  TR+  R  T
Sbjct: 695 AGTIHVKQGKWLHCELPSGRRMSYCDPQIKLTKTSWGETKPALRYMSVDGVTRKWVRTAT 754

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLYHL 650
           YGGK+ ENI QAV+RDI+AE M+N+ K G  YD +++VHDE+VCE  +  + +      L
Sbjct: 755 YGGKIVENITQAVARDIMAEAMLNSVKEGCPYDPIMSVHDELVCEVDED-KGDLEEFETL 813

Query: 651 MTSNPSWAKGLPLKAEGYESKRYRK 675
           M+  P WA G P+ AE    KRYRK
Sbjct: 814 MSDLPIWAAGCPIVAEAERFKRYRK 838


>gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 891

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15]
 gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15]
          Length = 891

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG        +
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 891

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
 gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24]
 gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4]
          Length = 891

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG        +
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342]
 gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342]
          Length = 891

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K           KM+E   + +              
Sbjct: 400 IDIQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241]
 gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241]
          Length = 891

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K           KM+E   + +              
Sbjct: 400 IDIQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 891

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K           KM+E   + +              
Sbjct: 400 IDIQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1]
 gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1]
          Length = 891

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDSALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171]
 gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171]
          Length = 877

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG        +
Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 442

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 561 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 654

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 655 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 715 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 767

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 788 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 819

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 820 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne]
 gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201]
 gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 891

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames]
 gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bacillus anthracis str. A2012]
 gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W]
 gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684]
 gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248]
 gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066]
 gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055]
 gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America
           USA6153]
 gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B]
 gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94]
 gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames]
 gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor']
 gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193]
 gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442]
 gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389]
 gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465]
 gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174]
 gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I]
 gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W]
 gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820]
 gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684]
 gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248]
          Length = 877

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
 gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052]
          Length = 867

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 93/640 (14%), Positives = 178/640 (27%), Gaps = 141/640 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                     +VLK  +E+ +V  V H+     T L     ++I       T + A    
Sbjct: 354 ISSKDSEEALKVLKNLMEDDNVKKVIHDGKNFVTFLNKNQ-IEIKGFD-FDTAIAAYLID 411

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
              +             K E  + +          E    +                   
Sbjct: 412 SSKS-------------KYEILELVNHYIGDNPNSEGSNIKAILCSYLPMVYEKLKENLH 458

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                +++         E  L Y+  ++   G+ ++  +   L      E  K  +E+  
Sbjct: 459 KENMDQLYY------EVEHPLIYVLSSMESIGFNINQGMLDELQTKFKKEIDKTQKEIYE 512

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
           L      +    ++L   LF +  L +   T+   +T Q VL           ++   R 
Sbjct: 513 L-ADEEFNISSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLMNKHDIIPKIMYYRQ 571

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++     +  L   ++ DGR+         + TGR S      QN+P       E   
Sbjct: 572 -ITKINSTYVEGLKNVVDEDGRIHSNFNQTVTT-TGRLSSTEPNLQNIPIKYEMGRE--- 626

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +R   I   E   LV  D + IE RVLA +AG++  + 
Sbjct: 627 ----------------------IRKVFIPMEETDILVSCDYSQIELRVLAHIAGDENMID 664

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AFE   D++  T +  F V   +VT   R+  K +   +                G++  
Sbjct: 665 AFEHHSDIHTKTASEVFKVPIGEVTSLMRSRAKAVNFGIV--------------YGIS-- 708

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                           A +        E     + +++ ++ E 
Sbjct: 709 ----------------------------AFSLAEDLKITKKEAEEYMSIYLERYPKIKEY 740

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              L    ++  E G  +                           R     ++ ++   +
Sbjct: 741 ---LENVVDEAKEKGYVLTILN-----------------------RRRFIPEIKSSNKIV 774

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                   R            +Q  + DI+   M+N            +++L VHDE++ 
Sbjct: 775 KAL---GDRLAMNAP------IQGSAADIIKLAMVNVYNKLNEKELKSELILQVHDELIL 825

Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                +      L    M +       + L  +      +
Sbjct: 826 NVKKDEFEEVKNLVAYEMENAIK--LKVALDVDVNFGDTW 863


>gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
 gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759]
          Length = 886

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 91/682 (13%), Positives = 186/682 (27%), Gaps = 154/682 (22%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PVMPQVLKEALENTDVTIVAHNSY 74
           K G+   ++   +   A   D   V + + +       M  ++++   +     +     
Sbjct: 329 KAGMYVISDSDILYGIAITCDARTVYVINSMSGVSSDAMSDIVRDIKTSGTSICIG---- 384

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALK---LSSQKMEEGKE 128
            +        +        +   + A              + +      L S+K   GKE
Sbjct: 385 -DIKSCLNDMDFSECDTNVLDVGIAAYLLNPLENSYNYDDISKEYLEVMLPSEKELTGKE 443

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-------TREIFKRLEPLSSK 181
            +  F     +             A++        D  +         +++       + 
Sbjct: 444 ELNAFTFISDNFLELF--------AYKALVPLLAMDTLIEKLKGTGMYDLYM------NV 489

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E    Y    +  RG  VD       +  ++    +L   +     G   +    ++L  
Sbjct: 490 ELPTVYTLHDMEKRGVRVDRTALEEYSHKLESRIKELHDSIIE-YAGKDFNINSPKQLGP 548

Query: 242 WLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF +  L     T+   +T   VL   K + P    +   R   S+        L   +
Sbjct: 549 VLFEDMALPGGKKTKTGYSTSADVLEKIKNVHPIINDILEYRQ-LSKLNSTYAIGLGSFI 607

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +SDGR+ GT      + TGR S      QN+P                            
Sbjct: 608 SSDGRIHGTFNQ-TITATGRISSTDPNLQNIPMRMELGR--------------------- 645

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                +R   I  +G   V AD + +E RVLA ++ +     AF+   D++ TT +  F 
Sbjct: 646 ----LIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNNIDIHSTTASEVFG 701

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V   +VT  QR   K +                    G++                    
Sbjct: 702 VPIDEVTPLQRRHAKAVNF--------------GIVYGIS-------------------- 727

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                         + +            + +   +  +    +   +  ++        
Sbjct: 728 ----------AFGLSEDLGISRKEASDFIEKYYDTYKSIKTYLDGQVKFAKE-------- 769

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                             N  +    GR     ++ ++     +      R         
Sbjct: 770 ------------------NGYVKTMFGRIRPIPELKSSNFMQRSF---GERVAMNSP--- 805

Query: 599 ENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLM 651
              +Q  + DI+   M++             ++L +HDE++ ET   +      +    M
Sbjct: 806 ---IQGSAADIIKIAMLHVNIKLKELGLKSRLILQIHDELLIETAKDEVDTVRKILVDEM 862

Query: 652 TSNPSWAKGLPLKAEGYESKRY 673
                    +PL+        +
Sbjct: 863 MHAADMT--VPLEVGVASGNNW 882


>gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488]
 gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum]
 gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488]
          Length = 877

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
 gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200]
          Length = 891

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 96/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     K+ L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K      K   ++    K     + KG        +
Sbjct: 400 IDIQGVD-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   E  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 891

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 96/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     K+ L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K      K   ++    K     + KG        +
Sbjct: 400 IDIQGVD-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   E  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
 gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99]
          Length = 877

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293]
 gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293]
          Length = 891

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 400 IDVQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842]
 gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842]
          Length = 877

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 96/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     K+ L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K      K   ++    K     + KG        +
Sbjct: 386 IDIQGVD-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 442

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   E  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 561 VLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 654

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 655 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 715 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 767

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 788 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 819

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 820 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L]
 gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L]
          Length = 891

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 891

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 188/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG        +
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 CNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
 gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26]
          Length = 891

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42]
 gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42]
          Length = 891

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187]
 gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97]
 gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187]
          Length = 877

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  + AF+   D++  T    F V   +VT + R   K +   
Sbjct: 653 ADYSQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 891

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 96/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     K+ L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K      K   ++    K     + KG        +
Sbjct: 400 IDIQGVD-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELK 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   E  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++            
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKRKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI]
 gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI]
          Length = 877

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134]
 gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134]
          Length = 877

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG         
Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPKLE 442

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 561 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 654

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 655 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 715 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 767

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 788 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 819

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 820 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W]
 gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876]
 gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W]
          Length = 891

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG         
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPKLE 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
 gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam]
 gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1]
          Length = 891

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987]
 gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987]
          Length = 877

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAG-REFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102]
 gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108]
 gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102]
          Length = 877

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297]
 gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297]
          Length = 933

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 92/670 (13%), Positives = 180/670 (26%), Gaps = 132/670 (19%)

Query: 31  ILFAFGFDDHPVELWDCVHDP-------VMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           +  A   +           +         +   L    E+  +    ++   +       
Sbjct: 365 VGLALATEPGRGWYLVFQSEESKVLDEAEVFNKLIPLFEDHAIVKTGYDIKADYHWF-NA 423

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALK-AVGEALKLSSQKMEEGKELIARFCKGETHECL 142
            N+  P        V+A           ++       S      + L       E +   
Sbjct: 424 LNIS-PSRLLNDVQVMAFVYDSTLKRDKSLSAHFSHLSIDNLVIQYLQKSPKTVEDYLGK 482

Query: 143 -YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQT 191
              R            G++          + + LE               E+ L      
Sbjct: 483 AGKRQLSPSAVKADDIGQWWAERADFVLRLGQWLEQGLASRQLSRVYQEIERPLSKTLAA 542

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           I + G  +DV   H L+     +   ++++   L      +    ++L   LF   GL +
Sbjct: 543 IEENGVKLDVEFVHELSTRFKRDLEDIERQAHDLAGV-EFNLDSPKQLADVLFERMGLPV 601

Query: 252 EDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM---NSDGRL 304
           +  T     +T + VL+           +  +R    +      + L       + D RL
Sbjct: 602 KSKTASGAPSTNEEVLTELAAEHELPRLILQSRR-LRKLVGTYTDPLPTMTIDHDGDQRL 660

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             T    GA +TGR +      QN+P  S                              +
Sbjct: 661 HTTYNQTGA-QTGRLNSNDPNLQNIPVRSEEGR-------------------------SI 694

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A +G ++V AD + IE R++  ++ +   ++AF  G+D++  T A    +   QV
Sbjct: 695 RKAFVAPQGYRIVAADYSQIELRIMTHLSQDANLIQAFREGKDIHRATAAEVMGIEEEQV 754

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           + +QR   K +   L Y   A           L ++        ++  E +     +   
Sbjct: 755 SAEQRRSAKAINFGLIYGMSA-----FGLARQLGISRTEAKTYVDAYFERYPGVRRYMDE 809

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
            +    E    +   G          R     +       +Q   +  E        +  
Sbjct: 810 TRAEAAESGYVETVFGR---------RLYLPGI----QSSNQIARKAAERTAINAPMQGT 856

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
              ++ M     +  L   S R+                                     
Sbjct: 857 AADIIKMAMVDVDNWLSNSSLRAR------------------------------------ 880

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPL 663
                    M+          + VHDE+V E  + D    +      M         +PL
Sbjct: 881 ---------MI----------MQVHDELVFEVHEDDVAALTEGVRFRMQHCA--NLDVPL 919

Query: 664 KAEGYESKRY 673
             +      +
Sbjct: 920 IVDVDTGASW 929


>gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 877

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 439

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 440 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 499

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 500 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 558

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 559 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 617

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 618 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 652

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 713 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 767

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 768 -----------------------------------------LNRRRYIPEITSRNFNLRS 786

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 787 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 817

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 818 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803]
 gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803]
          Length = 891

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 97/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L N ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLANGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K      K   ++    K     + KG         
Sbjct: 400 IDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      +   E  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFIEELEKNEQYELFTELELPLARVLADMEVKGVKVDTDRL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSCKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
 gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM
           13280]
          Length = 931

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 96/602 (15%), Positives = 165/602 (27%), Gaps = 139/602 (23%)

Query: 88  IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +   R   T+V A       +      + E    +S     G++         +      
Sbjct: 449 VDSTRLFDTVVAAYLLDSVRSDFTDAYLAETYLHASLPSAAGED--GAPADAVSIAARGA 506

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                 RE      E    D   T             E  L  +  ++   G  VD A  
Sbjct: 507 WLARTLREPLAAALEAQGADAIFT-----------KIEMPLVRVLASMERAGMYVDPARL 555

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TT 258
              +  +  +   L+  +  L  G   +     +L   LF   GL    L +      +T
Sbjct: 556 AAQSDELVGQIQALEARIRELAGGEEFNLSSPMQLSRILFDTLGLPTAGLKKTQRGYYST 615

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
             +VL    K       +   R   ++     L+TL      DGR+  T      + TGR
Sbjct: 616 NAKVLEDLAKNHEIVRLILEFR-EKTKIKSTYLDTLGPLRRHDGRVHTTYNQ-TITATGR 673

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
            S      QN+P  S                          +   V+      EG   V 
Sbjct: 674 LSSSSPNLQNIPTRSE-------------------------LGHAVKRAFSVEEGSVFVA 708

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
            D + IE R+LA ++G++  + AF  GED +  T AR F V   +VT   R+  K +   
Sbjct: 709 IDYSQIELRLLAHLSGDEHLVSAFNEGEDFHAETAARVFGVPVDEVTPQLRSRAKAVNFG 768

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           +                                               +     +     
Sbjct: 769 IV--------------------------------------------YGQQAYGLSQTLDI 784

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                  +  A+ + +  V    +E     +QT                           
Sbjct: 785 PMAEAREMIDAYFRAYPGVRTYLDETVTFAKQT--------------------------G 818

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                 GR     ++      +        R            +Q  + DI+   M++  
Sbjct: 819 YAETMYGRRRPIPELRIPAQRM-----FGERTAMNHP------MQGSAADIIKIAMVHVA 867

Query: 619 KAG------YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESK 671
           +          ++L VHDE+  E P  +     +M+   M         +PL A+    +
Sbjct: 868 ERLRAEGFTAKMILQVHDELDFECPVGEVDRLIAMVREEMEGVAE--LRVPLIADASIGE 925

Query: 672 RY 673
            +
Sbjct: 926 TW 927


>gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550]
 gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550]
          Length = 891

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG         
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
 gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216]
          Length = 933

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 107/686 (15%), Positives = 193/686 (28%), Gaps = 142/686 (20%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFE 76
                       V   A    D      D +      +  L   L + D   VAH+    
Sbjct: 355 HVTGEWSRGSGEVTGLALAGADGVAAWIDPLTLEPADEQALAAWLADPDRPKVAHDVKGP 414

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVG-----EALKLSSQKMEEGKE 128
              L       +     + T + A           L  +        L+          +
Sbjct: 415 SHALL-ARGWTLA-GVVLDTALAAYLCRPDQRSYDLADLAVRHLKRELRAEGSTGGADAD 472

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELW 186
           +  +     +   +    +    E         +    +  E+ +R         E  L 
Sbjct: 473 VDEQLTLDGSDGPVGGDQQARAEEGMVRALAISELAGVLAAELEERGGTRLLHEVELPLV 532

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            +       G  VD  L   L         +   +   +    + +    ++L+T LF +
Sbjct: 533 AVLAAQERVGIAVDDELLADLEARFAERVAQAQAQAYEVIGTEI-NLGSPKQLQTVLFEQ 591

Query: 247 TGLHLEDLTET---TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
             +     T+T   T    L++   K   P    +  +R  ASR     +  L +++  D
Sbjct: 592 LDMPKTKRTKTGYTTDADALAALFVKTEHPFLAHLLEHR-DASRLRQT-VEGLRKSVADD 649

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  T Q + A+ TGR S      QN+P  +                            
Sbjct: 650 GRIHTTYQQMIAA-TGRLSSTDPNLQNIPIRTEEGRR----------------------- 685

Query: 362 DCVRSCVI------ASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
             +R   +      A +G + L+ AD + IE R++A ++G++  + AF +GEDL+    +
Sbjct: 686 --IREAFVVGPDAGAGDGYECLLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLHRFVGS 743

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           R F VAP  VT + RA  K M   L Y            +  L                 
Sbjct: 744 RVFGVAPVDVTPEMRAKIKAMSYGLAYG-----LSAFGLSNQL----------------- 781

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                        + +   + Q+   V +  + + +   +T   
Sbjct: 782 ----------------------KISTEEAKDLMDEYFQRFGGVRDYLHGVVEEARRT--- 816

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                         GR     D+ ++            R     
Sbjct: 817 -----------------------GWTETIMGRRRYLPDLASDN---RQRREMAERMALNA 850

Query: 595 GKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  +Q  + DI+   M++             ++L VHDE+V E    +      L 
Sbjct: 851 P------IQGSAADIIKVAMLDLDAGLREAGLRSRLLLQVHDELVLEVARGEREPLEELV 904

Query: 649 H-LMTSNPSWAKGLPLKAEGYESKRY 673
              M      A  +PL       + +
Sbjct: 905 RATMAGAADLA--VPLDVSVGVGRSW 928


>gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676]
 gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676]
          Length = 891

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 94/658 (14%), Positives = 183/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K           KM+E   + +              
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      V   E  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264]
 gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264]
          Length = 877

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG         
Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 442

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 561 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 654

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 655 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 715 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 767

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 788 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 819

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 820 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
 gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300]
          Length = 907

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 90/533 (16%), Positives = 159/533 (29%), Gaps = 129/533 (24%)

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIV 211
                 +T  + + L P   + +   Y         + + +  RG  +D      L++ +
Sbjct: 480 AATRAAITYRLLQDLPPHLDEARRKLYEEVEKPLSAVLKRMEVRGVRLDSDYLRGLSEAL 539

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSN 266
                 L+ E+  L      + R  ++L+T L+ E GL     T+     +T    L   
Sbjct: 540 AGRIATLEAEIHRLAG-REFAIRSRDQLETVLYDELGLASGKKTKLTGKRSTAVSALEPL 598

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFP 325
           +   P    +   R    +     L+ L   +N   GRL  T     A+ TGR S     
Sbjct: 599 RNEHPIIPALLEYR-ELEKLRGTYLDPLPNLVNPRTGRLHTTFSQTTAA-TGRLSSLNPN 656

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S    E                         +R   IA EG  L+ AD + IE
Sbjct: 657 LQNIPIRSELGRE-------------------------IRKGFIADEGYCLISADYSQIE 691

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA +A +    +AF  G D++  T A+   +A   +T +QR   K +          
Sbjct: 692 LRLLAAIADDPLMQQAFREGADIHRRTAAQVLGLAEDAITPNQRRAAKTVN--------- 742

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  + E         +
Sbjct: 743 -----FGVLYGMS------------------------------AHRLSNELGIPYAEAAQ 767

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               +   +  +      + +  +   E+G                             G
Sbjct: 768 FIDVYFNTYPGIRRY---IERTLDFGREHGYVETLY-----------------------G 801

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----G 621
           R     ++ +             R            +Q  + DI+   M+   +     G
Sbjct: 802 RRRYVPELKSQN---RVIREAGERLAYNMP------IQGTAADIIKIAMVRLDQELDALG 852

Query: 622 YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P T     + L   +M         +PL  E      +
Sbjct: 853 ARLLLQVHDELLIEAPATQADRVAALTREVMEQAAH--LSVPLAVEVGTGPNW 903


>gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 891

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG         
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPKLE 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185]
 gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2]
 gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185]
          Length = 891

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG         
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPKLE 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228]
          Length = 880

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/669 (15%), Positives = 192/669 (28%), Gaps = 142/669 (21%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77
           K      A    +    F F +             +   +K  LE+  V  +  ++    
Sbjct: 331 KLETGSKAISGKIDKILFYFKNETKMYIYHPEAK-IAAEIKFILESKKVKKLMPDAK--- 386

Query: 78  TVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
               +    ++ +       L+        S+L  + E L           EL   F + 
Sbjct: 387 LAFLSLLKNEVKVAGISFEPLLAFYLLQPSSSLPELEEVL---------SHELSLSFTEL 437

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
           ET + L  +         +L  +          +    L      E  L  +   +   G
Sbjct: 438 ETEQKLAVKTSKLFELETKLITK---------LKENNLLNLYQEIELPLIKVLAQMELNG 488

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      L++ +      +  +   L      +    ++L   LF + GL +   T+
Sbjct: 489 VKVDKDWLANLSEKLGKRLAIITDKAHKLAG-EEFNLNSPKQLGEILFEKLGLPVIKRTK 547

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL   +        + +     ++     +++L   +N +     T      
Sbjct: 548 TGYSTNASVLEKLEGKHEIIP-LISEYRELAKLKSTYIDSLPPLINDETAKIHTSFNQMV 606

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SE 372
           + TGR S      QN+P  +    E                         +R   I    
Sbjct: 607 TATGRLSSTEPNLQNIPIRTEEGRE-------------------------IRKAFIPSRS 641

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+  D + IE RV A ++G+Q   +AF    D++  T A  F V    VT D R   
Sbjct: 642 DMILLAVDYSQIELRVFAHLSGDQKLKEAFNNEADIHTETAAEVFEVKAEAVTPDLRRHA 701

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           KV+   + Y   A        +  L++         +   E +   + +     E   + 
Sbjct: 702 KVINFGIAYGMSA-----YGLSQDLDIPVEEAQTYIDKYFERFSGVKKYMEQTIEKVKKL 756

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
              +                                             +RR +P +   
Sbjct: 757 GYAETMF-----------------------------------------GRRRYIPEINSS 775

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                                   R+ +NT                   VQ  + DI+ +
Sbjct: 776 NYHRRSF---------------AERTAINTP------------------VQGTAADIMKK 802

Query: 613 GMMNAT------KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
            M++        +   +I+L VHDE+V E   +  +  A ++   M +       +PL  
Sbjct: 803 SMLDVYSCLKKSELDLNILLQVHDELVFEVNRNDLDEAAELIKEKMENTTK--LDVPLIV 860

Query: 666 EGYESKRYR 674
           +    + +R
Sbjct: 861 DLQIGENWR 869


>gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
 gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6]
          Length = 874

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/661 (15%), Positives = 184/661 (27%), Gaps = 165/661 (24%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF----ERTVLKA-CFNLD 87
            A    D  +        P +   L +             + F    +   L     +  
Sbjct: 357 LAIAVGDKEIVYTGLT--PKLVDRLLK-------------AKFVIAPDVKALLHTHADWG 401

Query: 88  -IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            IP  +W    + +                         G  L      G +        
Sbjct: 402 RIPPEKWFDLGLASYLLEPED------RDYGWPKLSARWGTAL------GLSAANPGLLA 449

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                +  +        ++  T E+             L  +   +   G  +D      
Sbjct: 450 LTMTDQLLKRLSGAHLVELMKTLEL------------PLIPVLADMESAGVKLDAEALAD 497

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRV 262
             + V  +  ++ +++         + R  ++L   LF    L +   T     +T Q V
Sbjct: 498 FLEEVQKDLDRITEDVYR-EAQGPFNIRSAQQLGDVLFNRLKLPVSGKTRGGQASTSQDV 556

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L       P    +   R +  +     L  L   M  DGR+R T   L A+ TGR S  
Sbjct: 557 LEKLSGHHPVVDALLEFR-KLEKLRSTYLEPLPRLMGGDGRIRTTFNQL-ATATGRLSSS 614

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P                                 +R+C  A EGKKL+ AD +
Sbjct: 615 NPNLQNIPVRGALGRR-------------------------MRACFTAPEGKKLISADYS 649

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RVLA ++ ++  L AF  G D++  T +  F+  P+++T DQR   K +       
Sbjct: 650 QIELRVLAHLSRDETLLAAFREGADIHARTASLLFDAPPSEITPDQRRNAKTINF----- 704

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G+     A                               E     + 
Sbjct: 705 ---------GLIYGMGPQKLAQ------------------------------ELKIPLSE 725

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +     + ++   +   +  + +   +    G                           
Sbjct: 726 AKAFMARYFERLQGLKHFYENVEEMARE---QGYVTTLA--------------------- 761

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619
             GR     D+               R+          ++Q  + DI+   M+       
Sbjct: 762 --GRRRPLPDIQAESQ---QARSLARRQAI------NTLIQGSAADIIKLAMLAVHGDET 810

Query: 620 ---AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS--WAKGLPLKAEGYESKRY 673
                  ++L VHDE++ E P+     A   +  LM +         +PLKA+   ++ +
Sbjct: 811 LRTLDAKLLLQVHDELLLEVPEAAAQEAGERVAALMANVRPGGIVLDVPLKADWGAAENW 870

Query: 674 R 674
            
Sbjct: 871 G 871


>gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 882

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/637 (13%), Positives = 185/637 (29%), Gaps = 143/637 (22%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSAL 109
             + + L+   E+  +  + +++  +  +L    +  I +      ++++       ++ 
Sbjct: 355 KDIVEDLRALFEDEKIEKIGYDAKEDVIIL---LSKKIDLKNLTYDSMIVEYLLDSTAS- 410

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                      Q +    +L +   + ++      + K           +Y    +  + 
Sbjct: 411 -------SFEFQNIISKYDLGSYKDE-QSLLGKGVKKKSYSDLEKDELFKYFSFILNGSF 462

Query: 170 EIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           ++ +                  E  L  +   +   G   +V++   + + +D     L 
Sbjct: 463 KLKEIQMEKLEELEMVDLYREIELPLLEVLAYMELTGIKTEVSVLDDIGKNLDDRIENLT 522

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQV 276
             +  ++     +    ++L   LF +  L +   T+   +T Q VL      +P    +
Sbjct: 523 SSIFEISG-EEFNINSTKQLGEILFDKLRLTVIKKTKTGYSTAQDVLEKLVDESPIIENI 581

Query: 277 FNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R + ++     ++ L   +N   GR+       G + TGR S      QN+P  S  
Sbjct: 582 LEYR-KLTKLKNTYIDGLKALINEKTGRIHSRFNQTG-TSTGRISSTEPNLQNIPIRSEE 639

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                       +R   +ASE   LV  D + IE RVLA ++ +
Sbjct: 640 GR-------------------------LIRGAFLASEDSTLVDCDYSQIELRVLASLSKD 674

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              ++AFE G D++  T +  F+V    VT   R+  K +   + Y            + 
Sbjct: 675 PRMMEAFEHGMDIHTKTASEVFHVDKEDVTDLLRSRAKAVNFGIVYG-----ISDFGLSR 729

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            L                                              +     +     
Sbjct: 730 QL---------------------------------------GITRELAKEYIDGYFDNFK 750

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           +V E  +   +  ++                             +     R     ++  
Sbjct: 751 KVKEYMDYEIETGKK--------------------------QGYVKTIFNRRRYIPELSA 784

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
                        R            +Q  + DI+   M+              ++LT+H
Sbjct: 785 KNF---NIRSFGERIA------LNTPIQGSAADIIKIAMVKVYGEIKKRNLKSKLILTIH 835

Query: 630 DEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKA 665
           DE+V +  + +      L   +M +       +PLK 
Sbjct: 836 DELVVDAVNDELEVVEELMKDIMENAVK--LNVPLKV 870


>gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
 gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11]
          Length = 877

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 97/675 (14%), Positives = 191/675 (28%), Gaps = 150/675 (22%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAH 71
           L   G   + E     + AF + +          D + +   P+                
Sbjct: 332 LETLGENYHREQ----IVAFAWGNAEKIYVSKNLDLLTEMKFPEN--------------- 372

Query: 72  NSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
              ++     VL +  N+++P+ +    ++           K    A       +   +E
Sbjct: 373 --TYDFKKNRVLLSHLNIELPLVK-FDAMLAKYLISTTEDNKISTIARLFDVGHLATDEE 429

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
               F KG       D    +H           K  +       ++   LS  E  L  +
Sbjct: 430 ---IFGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEV 486

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V       +    + +   L +E+  L      +    ++L   LF +  
Sbjct: 487 LAKMEITGISVSQNTLEEIGAENEEKLALLTREIYELAG-EEFNINSPKQLGVILFEKLQ 545

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+   +T   VL     L+P   ++   R   ++     +  L+  +  DG++ 
Sbjct: 546 LPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQ-INKVQSTYVKGLIPQIADDGKIH 604

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
                   ++TGR S      QN+P       +                         +R
Sbjct: 605 TRYVQD-LTQTGRLSSVDPNLQNIPVRLEEGRK-------------------------IR 638

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              + S+   L+ +D + IE RVLA ++ ++  + AF+ G D++ +T  R F +  A+  
Sbjct: 639 KAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVFGIEKAE-- 696

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
                                                       +       A NF    
Sbjct: 697 -----------------------------------------DVTANDRRNAKAVNFGVVY 715

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
             +    A          +   + + +++  +      + +                   
Sbjct: 716 GISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARD--------------- 760

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                         +   S R     D+               R            +Q  
Sbjct: 761 -----------KGFVETMSHRRRKIPDINARNF---NVRGFAERTAINSP------IQGS 800

Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWA 658
           + DIL   M+N  KA         ++L VHDEI+ + P  +      ++   M      A
Sbjct: 801 AADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEEIQVLVKETMEEAIELA 860

Query: 659 KGLPLKAEGYESKRY 673
             +PLK +    K +
Sbjct: 861 --VPLKVDENTGKTW 873


>gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 891

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG         
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDIKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIQKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469]
 gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469]
          Length = 912

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/600 (15%), Positives = 161/600 (26%), Gaps = 141/600 (23%)

Query: 88  IPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           I   R   T V A       +     G        ++ E  + I                
Sbjct: 436 IDSDRLFDTGVAAYLLESDRSSFDINGLVELYFGSELPEPTDEIPAAALRAVAARALVPV 495

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                E               + E+F  LE           +   +  RG  VD      
Sbjct: 496 LTKKLED------------DGSLELFTSLEMQL------LPVLAAMERRGLYVDPQKLAE 537

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQ 260
            +  +  +  +    +   T G   +     +L   LF    L    L +      +T  
Sbjct: 538 QSAQLGEDIAQRVASIHQ-TAGEDFNLDSPSQLSHILFDVLKLPTYGLKKTRTGFYSTNA 596

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
           +VL    +       V   R   ++     L+ L   +  D R+  TL     + TGR S
Sbjct: 597 KVLGELAQEYQIVADVLEYR-ERAKIKSTYLDALPSLIRGDKRIHTTLNQ-TVTATGRLS 654

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QN+P  S                          +   VR+     EG   +  D
Sbjct: 655 SSDPNLQNIPTRSE-------------------------LGHRVRTAFTVPEGSVFLACD 689

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA ++ ++  + AF +G D +  T AR F V   +VT   R+  K +   + 
Sbjct: 690 YSQIELRLLAHLSADEHLVAAFNSGADFHAATAARVFGVPVEEVTPALRSRAKAVNFGIV 749

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                                                         +     A       
Sbjct: 750 --------------------------------------------YGQQAFGLATSLKISR 765

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              + +   +   +  V      L  +     E G AI                      
Sbjct: 766 KEAQEMIDRYFDAYPGVRAY---LDDSVRTAHECGYAITMY------------------- 803

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
               GR    R+   +            R            +Q  + DI+   M+N  K 
Sbjct: 804 ----GRKRHIREFNQSN---RQLIAFGERTAMNHP------MQGSAADIIKIAMINVEKR 850

Query: 621 G------YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                    ++L +HDE+  E P+++    S ++   M    +    +PL A+      +
Sbjct: 851 LRDEGLTSKLILQIHDELDLEVPESEIETVSTLVKETMEDVVT--LRVPLIADVSYGSNW 908


>gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 567

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 219/573 (38%), Positives = 286/573 (49%), Gaps = 58/573 (10%)

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQI 210
            W  F EY + DV   R++ KRL   +    EL  W+LDQTINDRG  VD  LA      
Sbjct: 2   DWAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGA 61

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
           V+  +  L    E+LT G V ++   + L   L  E G+ L D+ + T +R L  +  L 
Sbjct: 62  VERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCL-DDPLLP 120

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
               ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLP
Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 331 RPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           RP+ S   +   I  +          D + + S  +RSC+IA   KKLVVADL+ IE RV
Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240

Query: 389 LAWMAGEQWKLKAF----------------------------------------ETGEDL 408
           LAW+AGE  KL AF                                          G+D+
Sbjct: 241 LAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDI 300

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YA SF +AP  VTK+QR IGKV ELALGY GG  AF   A+   ++L   A     
Sbjct: 301 YKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL 360

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
              P   ++A    +W + N             AC+  K+AWR  H  ++  W  L  A 
Sbjct: 361 --PPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAA 418

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT- 583
              I + +            + ++  +  L L LPSGR L Y     D     SY+ T  
Sbjct: 419 TDAIGHPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHP 473

Query: 584 -TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
            TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDE++ E  D   F
Sbjct: 474 ITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAF 533

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           NA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 567

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 217/573 (37%), Positives = 282/573 (49%), Gaps = 58/573 (10%)

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQI 210
            W  F EY + DV   R++ KRL   +    EL  W+LDQTINDRG  VD  LA      
Sbjct: 2   DWAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGA 61

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
           V+  +  L    E+LT G V ++   + L   L  E G+ L D+ + T +R L  +  L 
Sbjct: 62  VERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCL-DDPLLP 120

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
               ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLP
Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 331 RPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           RP+ S   +   I  +          D + + S  +RSC+IA   KKLVVADL+ IE RV
Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240

Query: 389 LAWMAGEQWKLKAFETGEDL---------------------------------------- 408
           LAW+AGE  KL AF   +                                          
Sbjct: 241 LAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDI 300

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           Y   YA SF +AP  VTK QR IGKV ELALGY GG  AF   A+   ++L   A     
Sbjct: 301 YKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL 360

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
              P   ++A    +W + N             AC+  K+AWR  H  ++  W  L  A 
Sbjct: 361 --PPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAA 418

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT- 583
              I + +            + M+  +  L + LPSGR L Y     D     SY+ T  
Sbjct: 419 TDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHP 473

Query: 584 -TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
            TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDE++ E  D   F
Sbjct: 474 MTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAF 533

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           NA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566


>gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I
 gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 877

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/675 (14%), Positives = 193/675 (28%), Gaps = 150/675 (22%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAH 71
           L   G   + E     + AF + +          D + +   P+                
Sbjct: 332 LETLGENYHREQ----IVAFAWGNSEKIYVSKNLDLLTEMKFPEN--------------- 372

Query: 72  NSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
              ++     VL +  N+++P+ +    ++           K    A       +   +E
Sbjct: 373 --TYDFKKNRVLLSHLNIELPLVK-FDAMLAKYLISTTEDNKISTIARLFDVGHLATDEE 429

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
               F KG       D    +H           K  +       ++   LS  E  L  +
Sbjct: 430 ---IFGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEV 486

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V       +    + +   L +E+  L      +    ++L   LF +  
Sbjct: 487 LAKMEITGISVSQNTLEEIGAENEEKLASLTREIYDLAG-EEFNINSPKQLGVILFEKLQ 545

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+   +T   VL     L+P   ++   R   ++     +  L+  +  DG++ 
Sbjct: 546 LPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQ-INKVQSTYVKGLIPQIADDGKIH 604

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
                   ++TGR S      QN+P       +                         +R
Sbjct: 605 TRYVQD-LTQTGRLSSVDPNLQNIPVRLEEGRK-------------------------IR 638

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              + S+   L+ +D + IE RVLA ++ ++  + AF+ G D++ +T  R F +  A+  
Sbjct: 639 KAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAE-- 696

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
                                                       +       A NF    
Sbjct: 697 -----------------------------------------DVTANDRRNAKAVNFGVVY 715

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
             +    A          +   + + +++  +      + +                   
Sbjct: 716 GISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARD--------------- 760

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                         +   S R     D+               R            +Q  
Sbjct: 761 -----------KGFVETMSHRRRKIPDINARNF---NVRGFAERTAINSP------IQGS 800

Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWA 658
           + DIL   M+N  KA         ++L VHDEI+ + P +  E   +++   M      A
Sbjct: 801 AADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELA 860

Query: 659 KGLPLKAEGYESKRY 673
             +PLK +    K +
Sbjct: 861 --VPLKVDDNTGKTW 873


>gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX]
 gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX]
          Length = 929

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/666 (14%), Positives = 174/666 (26%), Gaps = 133/666 (19%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACF 84
            D  +I  A           D        +  L   L +     V H   +    L    
Sbjct: 374 RDGDIIRLALAVPSGRAVCLDPTQLDPADEAALTAWLADPAYPKVLHGVKWALRAL-WAR 432

Query: 85  NLDIPIHRWICTLVLARSNGLPSA---LKAVGEAL--KLSSQKMEEGKELIARFCKGETH 139
              +       T + A           L  +      +  ++   EG +L          
Sbjct: 433 GWTLDGVE-SDTAIAAYLLEPGRRNFELATLCLRYLGRELTEHNAEGAQLTLDLEGTGDD 491

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
           +    R                  D  +TR     L         L  +   + D G   
Sbjct: 492 QDTARRELALRA--LATVELALALDAELTRREGLDLLHNLE--LPLAEVLARMEDAGIAA 547

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257
           D+     L         +   E   L      +    ++L+  LF E GL      +T  
Sbjct: 548 DLTYLRDLEAEFAAAVRQAVDEAHRLVG-REFNLGSPKQLQQILFDELGLPKTKRIKTGY 606

Query: 258 TCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           T      +    +   +   +       ++     +  L++ +  DGR+  T      + 
Sbjct: 607 TTDADALAWLAAQTDNELPVILLRHRDQTKLRTT-VEGLIKTIAEDGRIHTTFHQ-TVTA 664

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  + +                            +R   +  EG +
Sbjct: 665 TGRLSSAEPNLQNIPVRTDAGRR-------------------------IRRAFVVGEGYE 699

Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+ AD + IE R++A ++ ++  ++AF +G D +    +R F +   QV  + RA  K 
Sbjct: 700 QLLTADYSQIELRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARARIKA 759

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           M   L                GL+    A                               
Sbjct: 760 MNYGL--------------AYGLSDYGLAQQ----------------------------- 776

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                      + + +     +V +    L     +    G                   
Sbjct: 777 -LGISPKEARVLMEEYFSHFGKVRDY---LEAVVVRARREGYTATIL------------- 819

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                     GR     D+ ++            R            +Q  + DI+   M
Sbjct: 820 ----------GRRRYLPDLNSDN---RQRREMAERMALNAP------IQGSAADIIKLAM 860

Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEG 667
           +   +A         ++L VHDE+V E    +      ++   M+        +PL    
Sbjct: 861 LRVDRALRENGLASRMLLQVHDELVLEVAPGELDTVRELVVEHMSQAQQ--LRVPLAVSV 918

Query: 668 YESKRY 673
                +
Sbjct: 919 GVGPNW 924


>gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 868

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/605 (12%), Positives = 166/605 (27%), Gaps = 139/605 (22%)

Query: 82  ACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                ++         + A          A   +          +  GK+ +    +   
Sbjct: 386 YHLWEELLEGEIHDLSLGAYLLNPLKDSYAYDDLARDY---MDLVLPGKKELQNTAEEGL 442

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
           +         N              D     E+++ +E           +   +   G  
Sbjct: 443 YSAFVSWQAKNR-------IFQELKDTE-QWELYRDVEEPL------VPVLYRMEKAGIL 488

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           VD     +  + +      L +E+ ++      +    ++L   LF +  L     T+  
Sbjct: 489 VDKEALLSYGEELKKNIAMLQEEIYAMAG-EEFNINSPQQLGGILFEKMQLPGGKKTKTG 547

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL   ++  P   ++   R   S+        L   +  D R+ G+ Q +  + 
Sbjct: 548 YSTAVDVLEKLQEDYPIVGKILEYR-TYSKLNSTYAEGLSNYVGEDQRIHGSFQQMV-TA 605

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  +                               RS  I  EG  
Sbjct: 606 TGRLSSTEPNLQNIPIRTEMGR-------------------------VFRSVFIPKEGSV 640

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
            + AD + +E R+LA ++ ++  ++A+    D++  T +  F+V   +VT + R   K +
Sbjct: 641 FLDADYSQVELRLLASLSKDEKLIEAYRKDADIHRVTASEVFHVPLEEVTPELRRNAKAV 700

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++                                  +  
Sbjct: 701 NF--------------GIVYGIS------------------------------AFGLSEG 716

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                   +   + +   + +V E  +       +                         
Sbjct: 717 LSISRQEAKEYIERYFTSYPKVKEYLDGEVAFARE------------------------- 751

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
            +  +    GR     ++  +     + +    R            +Q  + DI+ + M+
Sbjct: 752 -HSFVKTLFGRRRPLPEIHASNFMRRSFS---ERVAMNAP------IQGTAADIIKKAMV 801

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGY 668
              +          IVL +HDE++ E    +      +    M    S    +PL  E  
Sbjct: 802 IVDQKLSEKNCQSRIVLQIHDELLLEVVKEELETVKDILVSAMEHVVS--LPVPLIVEAT 859

Query: 669 ESKRY 673
               +
Sbjct: 860 VGNNW 864


>gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
 gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4]
          Length = 877

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L N ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIPADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KG 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K      K   ++    K     + KG         
Sbjct: 386 VDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPGLE 442

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      +   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 443 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF +  L +   T+   +T   
Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFEDLNLPVIKKTKTGYSTSAD 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 561 VLDKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 654

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A +   ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 655 YSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 715 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTL-- 767

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 788 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 819

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 820 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311]
 gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG
           18311]
          Length = 879

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 194/669 (28%), Gaps = 155/669 (23%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++           F + +          D +  +  + AL +  V     N  ++   
Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377

Query: 79  --VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIA 131
             VL +   +D+P        +             S +  +   L L + ++  GK    
Sbjct: 378 SKVLLSHLGIDLPTAN-FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVVYGKGAKR 436

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              + E       +     + A  +  E              + E L   E  L  +   
Sbjct: 437 AIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAE--------HGQSELLFDMELPLANVLAK 488

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  VD    + +         KL Q++  +      +    ++L   LF + GL L
Sbjct: 489 MEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAG-EEFNINSPKQLGVILFEKMGLPL 547

Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+   +T   VL     + P   ++   R   ++     +  L + +  DG++  
Sbjct: 548 EYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQ-ITKLQSTYVLGLQDYILEDGKIHT 606

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  ++TGR S      QN+P                                 +R 
Sbjct: 607 RYMQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 640

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             + S +   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  V
Sbjct: 641 AFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDV 700

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T + R   K +                    G++    ++                    
Sbjct: 701 TPNDRRNAKAVNF--------------GIVYGISDFGLSN-------------------- 726

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++  +    + + +  +               
Sbjct: 727 ----------NLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKD-------------- 762

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          +     R     D+ +             R            +Q 
Sbjct: 763 ------------KGYVSTLFHRRRELPDINSRNF---NVRNFAERTAINSP------IQG 801

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSW 657
            + DIL   M+N  KA         ++L VHDEI+ E P  +      ++   M      
Sbjct: 802 SAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKALVKETMEDAVEL 861

Query: 658 AKGLPLKAE 666
           A  +PL A+
Sbjct: 862 A--VPLIAD 868


>gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066]
 gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066]
          Length = 879

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 195/669 (29%), Gaps = 155/669 (23%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++           F + +          D +  +  + AL +  V     N  ++   
Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377

Query: 79  --VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIA 131
             VL +   +D+P        +             S +  +   L L + ++  GK    
Sbjct: 378 SKVLLSHLGIDLPTAN-FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVVYGKGAKR 436

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              + E       +     + A  +  E              + E L   E  L  +   
Sbjct: 437 AIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAE--------HGQSELLFDMELPLANVLAK 488

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  VD    + +         KL Q++  +      +    ++L   LF + GL L
Sbjct: 489 MEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAG-EEFNINSPKQLGVILFEKMGLPL 547

Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+   +T   VL     + P   ++   R   ++     +  L + +  DG++  
Sbjct: 548 EYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQ-ITKLQSTYVLGLQDYILEDGKIHT 606

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  ++TGR S      QN+P                                 +R 
Sbjct: 607 RYMQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 640

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             + S +   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  V
Sbjct: 641 AFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDV 700

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T + R   K +                    G++    ++                    
Sbjct: 701 TPNDRRNAKAVNF--------------GIVYGISDFGLSN-------------------- 726

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              +     + +++  +    + + +  +               
Sbjct: 727 ----------NLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKN-------------- 762

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          +     R     D+ +             R            +Q 
Sbjct: 763 ------------KGYVSTLFHRRRELPDINSRNF---NVRNFAERTAINSP------IQG 801

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSW 657
            + DIL   M+N  KA         ++L VHDEI+ E P  +      ++   M +    
Sbjct: 802 SAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKALVKETMEAAVEL 861

Query: 658 AKGLPLKAE 666
           A  +PL A+
Sbjct: 862 A--VPLIAD 868


>gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363]
          Length = 877

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/675 (14%), Positives = 193/675 (28%), Gaps = 150/675 (22%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAH 71
           L   G   + E     + AF + +          D + +   P+                
Sbjct: 332 LETLGENYHREQ----IVAFAWGNSEKIYVSKNLDLLTEMKFPEN--------------- 372

Query: 72  NSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
              ++     VL +  N+++P+ +    ++           K    A       +   +E
Sbjct: 373 --TYDFKKNRVLLSHLNIELPLVK-FDAMLAKYLISTTEDNKISTIARLFDVGHLATDEE 429

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
               F KG       D    +H           K  +       ++   LS  E  L  +
Sbjct: 430 ---IFGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEV 486

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  V       +    + +   L +E+  L      +    ++L   LF +  
Sbjct: 487 LAKMEITGISVSQNTLEEIGAENEEKLASLTREIYDLAG-EEFNINSPKQLGVILFEKLQ 545

Query: 249 LHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L +   T+   +T   VL     L+P   ++   R   ++     +  L+  +  DG++ 
Sbjct: 546 LPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQ-INKEQSTYVKGLIPQIADDGKIH 604

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
                   ++TGR S      QN+P       +                         +R
Sbjct: 605 TRYVQD-LTQTGRLSSVDPNLQNIPVRLEEGRK-------------------------IR 638

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
              + S+   L+ +D + IE RVLA ++ ++  + AF+ G D++ +T  R F +  A+  
Sbjct: 639 KAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAE-- 696

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
                                                       +       A NF    
Sbjct: 697 -----------------------------------------DVTANDRRNAKAVNFGVVY 715

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
             +    A          +   + + +++  +      + +                   
Sbjct: 716 GISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARD--------------- 760

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                         +   S R     D+               R            +Q  
Sbjct: 761 -----------KGFVETMSHRRRKIPDINARNF---NVRGFAERTAINSP------IQGS 800

Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWA 658
           + DIL   M+N  KA         ++L VHDEI+ + P +  E   +++   M      A
Sbjct: 801 AADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELA 860

Query: 659 KGLPLKAEGYESKRY 673
             +PLK +    K +
Sbjct: 861 --VPLKVDDNTGKTW 873


>gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
 gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV]
          Length = 881

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 107/664 (16%), Positives = 203/664 (30%), Gaps = 142/664 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKAC 83
            ++ FA+       +      D  + Q    KE LENT    V     ++     VL + 
Sbjct: 337 EMVGFAW----GNAQQIYASQDINLLQQPAFKEFLENTA-LKV-----YDFKRSKVLLSR 386

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             +++       + +           + V  A      K+ E + +  +  K        
Sbjct: 387 LGIELS-RPAFDSRLAKYLLSTVDNNEIVTIAGLYGKTKLAEDEAVYGKGAK--RALPEK 443

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
                +      +  E  K    + R+   +L  L   EQ L ++   +   G  V+   
Sbjct: 444 AILLSHLARKVTVLIETEKPMTDLLRQ-HDQLNLLYEMEQPLAFVLAKMEIAGIKVERET 502

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TT 258
             T+    +   T+L QE+  L      +    ++L   LF + GL       T+   +T
Sbjct: 503 LQTMQAENERILTRLTQEIYDLAG-EEFNINSPKQLGGILFEKLGLPTSFTKKTKTGYST 561

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL     + P   ++ + R   ++     +  L + + +DG++         ++TGR
Sbjct: 562 AVDVLERLAPIAPIVEKILDYRQ-IAKIQSTYVMGLQDWILADGKIHTRYLQD-LTQTGR 619

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377
            S      QN+P                                 +R   +   E   L+
Sbjct: 620 LSSVDPNLQNIPIRLEQGR-------------------------LIRKAFVPEWEDSVLL 654

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVME 436
            +D + IE RVLA ++G++  ++AF  G D++ +T  R FN+  P  VT + R   K + 
Sbjct: 655 SSDYSQIELRVLAHISGDKHLIEAFRHGADIHTSTAMRVFNIERPEDVTPNDRRNAKAVN 714

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             +                G++    A+                                
Sbjct: 715 FGVV--------------YGISDFGLAN------------------------------NL 730

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +     + +++  +      + +                              
Sbjct: 731 GISRKEAKSYIDTYFERYPGIKNYMENVVREARD-------------------------- 764

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
              +     R     D+ +             R            +Q  + DIL   M+ 
Sbjct: 765 KGYVETLFHRRREIPDINSRNF---NVRGFAERTAINSP------IQGSAADILKIAMIR 815

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYE 669
             +A         ++L VHDEIV E P+ +      L   +M S       +PLKA+   
Sbjct: 816 LGQALIDGNFKTRMLLQVHDEIVLEVPENELTAIKALVKDIMESAIE--LSVPLKADESA 873

Query: 670 SKRY 673
            K +
Sbjct: 874 GKTW 877


>gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
 gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196]
          Length = 891

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 96/656 (14%), Positives = 186/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L N ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIPADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KG 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K      K   ++    K     + KG         
Sbjct: 400 VDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPGLE 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      +   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A +   ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIAKDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
 gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313]
          Length = 931

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/657 (13%), Positives = 191/657 (29%), Gaps = 130/657 (19%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
             F   +     +      ++ Q   +K  LE++ +     N+  E  V      + +  
Sbjct: 385 IGFVIGNQADGYFASRDIDLLTQNSPVKRILEDSTILKNVFNAK-ELYVSLKRLGIALKG 443

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                 L+++           +G AL   +       +        +      D +   H
Sbjct: 444 VS-FDLLLVSYLLDTNDNNNDLG-ALAHDNDYYAVMTDEEVYGKGAKFAIPAADADFFEH 501

Query: 151 REAWRLFGEYCKGDVTVTREI--FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                +     +    +   +   ++ +     E  L  +   +   G  VD      + 
Sbjct: 502 LGRKAMAINLLRE--PLLDRLLSHEQTKLYEDIELPLTKILADMESTGITVDSEQLLQMR 559

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
             +    ++L+Q++         + +  ++L   LF E        T+   +T   VL  
Sbjct: 560 SKLTERLSELEQKIYQQAGH-EFNIQSPKQLGVVLFEEMKYTPIKKTKTGYSTSVEVLEK 618

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
              + P    +   R   ++     +  L+  ++       T      ++TGR S     
Sbjct: 619 MGDV-PIVESILAYRQ-VAKIQSTYVEGLLRVIHGSDSKVHTRYLQTLTQTGRLSSVDPN 676

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGI 384
            QN+P                                 +R   + S    +++ AD + I
Sbjct: 677 LQNIPVRIEEGR-------------------------QIRKAFVPSHSDWQILSADYSQI 711

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMELALGYQG 443
           E RVLA + G++    AF  GED++  T  R F +   +    + R   K +   + Y  
Sbjct: 712 ELRVLAHITGDKNLQAAFINGEDIHAATARRIFGIKDDEPVEGNVRRQAKAVNFGIVYGI 771

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                     +  + ++         +  +++ D + +   +  +  E    +       
Sbjct: 772 S-----DFGLSKNIGVSRKEAKAIIETYFDQYPDVKKWSDDIIASARETGYVETI----- 821

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                                               A +RR +P +  K+          
Sbjct: 822 ------------------------------------AHRRRYLPDIKAKRFNARSF---- 841

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
                        R+ +N+                   +Q  + DI+   M+    A   
Sbjct: 842 -----------AERTAMNS------------------PIQGSAADIIKIAMIKVQAAIEQ 872

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E P ++  +   L   +M S       +PL    +    +
Sbjct: 873 AGMQAHMLLQVHDELIFEAPASEMADLEKLVTKVMDSAVK--LDVPLLVSSHVGASW 927


>gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048]
 gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048]
          Length = 891

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 96/656 (14%), Positives = 185/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L N ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIPADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KG 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K      K   ++    K     + KG         
Sbjct: 400 VDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      +   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A +   ++AF    D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDPGLVEAFRHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3]
 gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3]
          Length = 891

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 94/656 (14%), Positives = 186/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L + ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIRTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG         
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLEKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMSDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M         +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIGKLEKLVPEVMEHAIELV--VPLKVDYSYGPTW 887


>gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a]
          Length = 884

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 85/595 (14%), Positives = 165/595 (27%), Gaps = 137/595 (23%)

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           + R     ++A                             IA          +       
Sbjct: 412 VARIHDVSLMAYLLDPTRTN------YGYLYLTERFSVPSIATGSVDVECVSMVKALLAM 465

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
              A +        D     +++      ++ E  L +    +   G  +D         
Sbjct: 466 DDAAVK-----ALQD-ESLWDLY------NNIELPLIHTLLVMEKNGIYIDPVKLEETTI 513

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
               E   + QE+  L      +    ++L   LF +  L +   T+   +T   VL   
Sbjct: 514 KFKAELEAVQQEIYELAG-ETFNINSPKQLGIILFEKMNLPVIKKTKTGYSTDAEVLDML 572

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           +  +P   ++   R   ++        L   +N +     T      + TGR S      
Sbjct: 573 RHESPIVEKILAYR-SVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSSDPNL 631

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIE 385
           QN+P  +    E                         +R+     EG   LV AD + IE
Sbjct: 632 QNIPVRTEKGRE-------------------------IRALFYPGEGFDTLVSADYSQIE 666

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA ++G++  +KAF  G+D++  T A     +  +VT ++R+  K +   +      
Sbjct: 667 LRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGII----- 721

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++    +                               +        + 
Sbjct: 722 ---------YGISDFGLS------------------------------RDLGITRQEAKN 742

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
             + +  ++ +V E          +  E GK                            G
Sbjct: 743 YIELYFSRYPKVKEYM---DNMVIEAHETGKVRTM-----------------------FG 776

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
           R     D+ +             R            +Q  + DI+   M           
Sbjct: 777 RMRELPDINSRNF---NRRSFAERTAMNTP------IQGTAADIIKLAMNKVESILEEKA 827

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               ++L VHDE+V E  + +      +L   M S       +PL  + + ++ +
Sbjct: 828 FKSRLLLQVHDELVLEVVNEELDAIQTLLKETMESIVE--LHVPLIVDVHNAENW 880


>gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS]
 gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS]
 gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS]
          Length = 920

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 101/678 (14%), Positives = 196/678 (28%), Gaps = 139/678 (20%)

Query: 16  LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNS 73
           L   G    Y  D   +       D      D        +  L   L +       H +
Sbjct: 357 LAVVGTHLAYDADATALAIVAA--DGDGRYIDTTSLDPDDEAALASWLADPGPPKALHEA 414

Query: 74  YFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKE 128
                 L         +      T + A          +L  +    L+   +     ++
Sbjct: 415 KLAMHDLA---GRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRADNPAQQ 471

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
            ++     +  +    +       A     +    D  + R        L   E  +  +
Sbjct: 472 QLSLLDDSDGGDDQAVQTLILRAVAVLDLAD--ALDEELARI--DSSSLLGRMELPVQRV 527

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  VD+     L            +   ++    + +    ++L+  LF E  
Sbjct: 528 LAEMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELE 586

Query: 249 LHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           +     T+T   T    L S       P    +  +R  A+R  V  ++ L+ ++ SDGR
Sbjct: 587 MPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVASDGR 644

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +  T     A+ TGR S      QN+P  + +                            
Sbjct: 645 IHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEAGRR------------------------- 678

Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  +G   ++ AD + IE R++A ++ +   ++AF TGEDL+    +R+F+V   
Sbjct: 679 IRDAFVVGDGYTEVMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVPID 738

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT D R   K M   L                GL+    A  +K               
Sbjct: 739 EVTPDLRRRVKAMSYGL--------------AYGLSAYGLAAQLKI-------------- 770

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                +     +  +   + +   ++     +            
Sbjct: 771 ----------------STEEAKVQMDQYFARFGGIRDYLRDVVDQARK------------ 802

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                         +       GR     ++ ++            R            +
Sbjct: 803 --------------DGYTSTVFGRRRYLPELDSSN---RNVREAAERAALNAP------I 839

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP 655
           Q  + DI+   M++  +A         ++L VHDE++ E  D +      L    M S  
Sbjct: 840 QGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMGSA- 898

Query: 656 SWAKGLPLKAEGYESKRY 673
            +A  +PL+      + +
Sbjct: 899 -YALDVPLEVSVGYGRSW 915


>gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407]
 gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 891

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 186/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     K  L N ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIQKDIALASDAFKAWLANGEMRKHTFDAKRAIVALKWN-G 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG         
Sbjct: 400 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELVGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 877

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 186/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     K  L N ++     ++      LK    
Sbjct: 329 HKADIQGFG--IQNENGCYFIQKDIALASDAFKAWLANGEMRKHTFDAKRAIVALKWN-G 385

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +D+        L+ A         K      K   ++    K     + KG         
Sbjct: 386 IDMQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 442

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      V   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 502 RNMGEELVGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 561 VLDKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 619

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 620 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 654

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 655 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV 714

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 715 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATL-- 767

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 768 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 787

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 788 --------------AERTAMNTPIQG---TAADIIKKAMIIM----AD-------RLEEE 819

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 820 GLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873


>gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621]
 gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621]
          Length = 891

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 96/656 (14%), Positives = 186/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L N ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFIPADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KG 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K      K   ++    K     + KG         
Sbjct: 400 VDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 456

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      +   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 457 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 575 VLDKLMDRHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 633

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 634 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 668

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A +   ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 669 YSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 728

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 729 YGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTL-- 781

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 782 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 801

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 802 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 833

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 834 GLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43]
 gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43]
          Length = 656

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 172/703 (24%), Positives = 280/703 (39%), Gaps = 84/703 (11%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60
           LF+DFE  S  DLT+ G+ +Y +D     + F F        +LW   +  V+P+ +   
Sbjct: 6   LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMATADLW--EYGNVVPKQIVMH 63

Query: 61  LENTDVTIVAHNSYFER----TVLKACFNL----DIPIHRWICTLVLARSNGLPSALKAV 112
           L +     VAHN+ F+      +L+         +I I +  C+   AR NGLP +L   
Sbjct: 64  LTSGG-LFVAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 122

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            EAL L  QK  EG + +             D    +H E +    +Y   D      ++
Sbjct: 123 CEALGLPVQKDTEGAKWMKEIAANP------DWTPTDHPEHFSRTYKYALIDTDAMVGVW 176

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +   PL  +EQ  + +D  IN RG  VDV  A  +  +      +LD E+  LT G + +
Sbjct: 177 ESTVPLPPREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 236

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + K+K +     G  ++D    T +++ ++   L     Q+   R+ ASR+   K +
Sbjct: 237 VTEVAKIKEYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--KKS 292

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL----PRPSRSHEELDQIITHLPT 348
             +   +  GRL+    + GA      +      Q L    PRP +   + + I+     
Sbjct: 293 AAILRAHVGGRLQHHTIYHGALSGRSTARGAGGAQTLNTARPRPGKKTADCEAILDACLR 352

Query: 349 SITSD------PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              +          L  ++D  R    A   G  LV ADL+GIEAR+  W+A +  KL+A
Sbjct: 353 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKLEA 412

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE G D Y       +++    VTKDQR +GK  +LALG+ G   AF  MA+  G++L  
Sbjct: 413 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGADGAFASMAANYGVHLPP 472

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                       +   WR         W
Sbjct: 473 EQVS---------------------------------------EIVYNWRAGRPAFERWW 493

Query: 522 NELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG----- 574
           +    +    ++    + ++   R +   +   KD   L + LPSGR++ Y +       
Sbjct: 494 SLCEYSALMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEP 553

Query: 575 NNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                +    +      T   K+   N  Q +SRD+    +++  +   +IV  ++DE +
Sbjct: 554 GANVPIAIYDKPEGYVETLDRKILSNNQTQGLSRDLFWSVLLDVDRVE-EIVHHIYDEAL 612

Query: 634 CET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E   +        L   M    +W  GLPL AEG+   R+RK
Sbjct: 613 LEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 655


>gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6]
          Length = 884

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 83/595 (13%), Positives = 167/595 (28%), Gaps = 137/595 (23%)

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           + R     ++A                             IA          +       
Sbjct: 412 VARIHDVSLMAYLLDPTRTN------YGYLYLTERFSVPSIATGSVDVECVSMVKALLAM 465

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
              A +        D     +++      ++ E  L +    +   G  +D         
Sbjct: 466 DDAAVK-----ALQD-ESLWDLY------NNIELPLIHTLLVMEKNGIYIDPVKLEETTI 513

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
               E   + QE+  L      +    ++L   LF +  L +   T+   +T   VL   
Sbjct: 514 KFKAELEAVQQEIYELAG-ETFNINSPKQLGIILFEKMNLPVIKKTKTGYSTDAEVLDML 572

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           +  +P   ++   R   ++        L   +N +     T      + TGR S      
Sbjct: 573 RHESPIVEKILAYR-SVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSSDPNL 631

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIE 385
           QN+P  +    E                         +R+     EG   LV AD + IE
Sbjct: 632 QNIPVRTEKGRE-------------------------IRALFYPGEGFDTLVSADYSQIE 666

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA ++G++  +KAF  G+D++  T A     +  +VT ++R+  K +   +      
Sbjct: 667 LRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGII----- 721

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++    +                               +        + 
Sbjct: 722 ---------YGISDFGLS------------------------------RDLGITRQEAKN 742

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
             + +  ++ +V E  + +     +T +                          +    G
Sbjct: 743 YIELYFSRYPKVKEYMDNMVTEAHETGK--------------------------VRTMFG 776

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
           R     D+ +             R            +Q  + DI+   M           
Sbjct: 777 RMRELPDINSRNF---NRRSFAERTAMNTP------IQGTAADIIKLAMNKVESILEEKT 827

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               ++L VHDE+V E  + +      +L   M S       +PL  + + ++ +
Sbjct: 828 FKSRLLLQVHDELVLEVVNEELDAIQTLLKETMESIVE--LHVPLIVDVHNAENW 880


>gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4]
          Length = 901

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 105/678 (15%), Positives = 184/678 (27%), Gaps = 166/678 (24%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSY------FE 76
           ED  +   A    D  V   DC        +   L E      V +   +        FE
Sbjct: 334 EDKLIKGAALSTGDATV-YVDCAGFITPDYLGHKLIEI-SKAGVKLCFWDLKNAMHILFE 391

Query: 77  R-------TVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG-EALKL--SSQKM 123
                    VL+     +I         V A              V  E L +   +Q  
Sbjct: 392 LMNQDEKAAVLEKGGKTEIFPTAV-DVAVAAYLLNPTKNAYTADDVASEILGIIIPAQAD 450

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS--- 180
             GK  +                             Y   +  V    F+++        
Sbjct: 451 LFGKTKLNAAL--------------EDDSMLEAVTTYACYNAYVAFAAFEKVIAEIKEEG 496

Query: 181 -------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E  L Y    +  +G  +D          + V   +L+Q + S       + 
Sbjct: 497 MLDIYENIEMPLVYTLFDMELQGIAMDKEALAEYGSRLSVRINELEQSIYSQAG-EEFNI 555

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF + G+     T+   +T   VL       P    +   R   ++     
Sbjct: 556 NSPKQLGVILFEKMGIEGGKKTKTGYSTAADVLEELSATNPIICDILEYRQ-LAKLKSTY 614

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            + L   ++ DGR+R T      + TGR S      QN+P       E            
Sbjct: 615 ADGLAACVDEDGRIRSTFMQ-TVTATGRISSTEPNLQNIPIRMELGRE------------ 661

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R      +    + AD + IE RVLA M+G++  + AF+ G+D++ 
Sbjct: 662 -------------IRKVFYPKKDCVFLDADYSQIELRVLAHMSGDENLIDAFKAGQDIHR 708

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           +T +  FN    +VT  QR   K +                    G++            
Sbjct: 709 STASLVFNTPFDEVTDLQRRRAKAVNF--------------GIVYGIS------------ 742

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                 A +        +     +   + ++ E    L    ++
Sbjct: 743 ------------------AFGLAKDIGVGRKEAQEYIDNYFVAYPKMHEFLEGLKSHAKE 784

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
               G                             GR     ++ ++            R 
Sbjct: 785 ---KGYVTTMY-----------------------GRRRPIPELASSNFMTRQF---GERV 815

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+N             ++L VHDE++ ET +++    
Sbjct: 816 AMNSP------IQGTAADIIKIAMVNVHDRLLKEGLKSKLLLQVHDELLVETLESERPQV 869

Query: 645 SM-LYHLMTSNPSWAKGL 661
              +   M +    A  L
Sbjct: 870 EKLIAEEMENAAKLAVDL 887


>gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
 gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501]
          Length = 872

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 90/669 (13%), Positives = 179/669 (26%), Gaps = 162/669 (24%)

Query: 29  CVILFAFGFDDHPVELWDCVHDP--VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            V        D      D        +   L+   E+ ++  ++ N+  E  +      +
Sbjct: 337 KVEGLTVA-SDEEACYIDTSDLDLAELIDKLQPYFEDYELNKLSLNTK-ENLIYLKEQGV 394

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           ++        L+                                    K +  E +    
Sbjct: 395 EVKGIS-FDPLLADYLLRPS---------------------------AKEQDLESILTDQ 426

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRG 196
                E      E     V +  ++  +L                E  L  +   +   G
Sbjct: 427 LQMELEKTESEAETEVQQVRILFKLQDKLTDKLADKGLMELFIDVELPLIPILAQMELNG 486

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  +   L+  ++ +   L      L      +    ++L   LF + GL +   T+
Sbjct: 487 IAVDQDMIQELSNKLEEKLDSLRSRAYELAG-EEFNLNSPKQLGEILFEKLGLPVIKRTK 545

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLG 312
              +T   VL   +        +   R +  +     ++ L + +N    R+  +   L 
Sbjct: 546 TGYSTSASVLEKLEDKHEIVPLILEYR-KYQKLKSTYVDPLPDLINPKTERIHTSFNQLV 604

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  +                              +R   +A E
Sbjct: 605 -TATGRLSSTEPNLQNIPIRTEEGRR-------------------------IRKVFVAEE 638

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
            K+L+  D + IE RVLA ++ ++  + A+  G+D++  T A  F +  ++V+  QR   
Sbjct: 639 RKELLAVDYSQIELRVLAHISQDENLIAAYREGQDIHTKTAAEVFGLEASEVSYQQRRRA 698

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y               +N++        N     +   + +     +   E 
Sbjct: 699 KAINFGIAYGISP-----WGLAKDINVSKQEAEDYINQYLNRYPKVKEYMDHQIKQAKEE 753

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                                                            +RR +P +   
Sbjct: 754 GYVTTI-----------------------------------------LNRRRYLPEINSS 772

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                                               R            +Q  + DI+  
Sbjct: 773 NYHRRSFGE---------------------------RMAINTP------IQGSAADIMKL 799

Query: 613 GMMN----ATKA--GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKA 665
            M+       +      I+L VHDE++ E P  +       +   M         +PLK 
Sbjct: 800 AMLESARVLDERELDTKILLQVHDELIFEVPPEELEEVQQVIKAEMEDVIE--LDVPLKV 857

Query: 666 EGYESKRYR 674
           +      +R
Sbjct: 858 DLKVGSNWR 866


>gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 887

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 89/649 (13%), Positives = 184/649 (28%), Gaps = 133/649 (20%)

Query: 43  ELWDCVHDPVMPQVLKEALEN----TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
                     + + L  AL +      + IV H+      + +A     + +     T V
Sbjct: 350 YYVPETA---LVEALLGALNDLPNADALGIVGHDLKALTHIFEAQGAQLVKMD--FDTYV 404

Query: 99  LARSNGLPSALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
            A           +   A K   Q +   +EL+ +         +    +          
Sbjct: 405 AAYLLEPADNRYDLKSLAAKYLDQTIVGEEELLGKGRTRRALAEIAAPERAAFIVGECAA 464

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKE--QELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
                    +  ++ +       ++    L  +  ++   G+ +D      L+   +   
Sbjct: 465 IH--GLHAELAHQLEEMEMTALYQKIELPLIPVLASMESIGFKIDQEQLKNLSAHFEARI 522

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
             L +++         +    ++L   LF E GL     T+   +T   VL   +     
Sbjct: 523 ETLTRQIYEEAGQR-FNINSTKQLGMILFEEMGLPPIKKTKTGYSTSVEVLEQLRPYNTI 581

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +   R   ++        L++ ++ +     +      + TGR S      QN+P  
Sbjct: 582 VDDILEYR-TVTKLDSTYGRGLIKLVDPETEKIYSHFNQTVTATGRISSSDPNLQNIPVR 640

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
           +    E                         +R   + S     LV AD + IE RVLA 
Sbjct: 641 TDLGRE-------------------------IRRVFVPSSPMCVLVDADYSQIELRVLAH 675

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +  ++  L+AF   +D++  T +  F V    VT++QR+  K +                
Sbjct: 676 LTQDENLLEAFAKNQDIHARTASEIFQVPLEDVTREQRSHAKAIN--------------F 721

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G                              +       E        +     + 
Sbjct: 722 GLIYG------------------------------KQAFSLGKELGIGRNQAQDYIDMYF 751

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            ++ +V      + +  +     G                             GR     
Sbjct: 752 SRYPKVYAYMKAIREEAKT---KGYVTTLY-----------------------GRRRYIP 785

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IV 625
           ++ +    +  +     R            +Q  + DI+   M+              ++
Sbjct: 786 EIQSRNRMIVQS---GERMA------LNTPIQGSAADIMKIAMVKVYHRLAKESFRSHLL 836

Query: 626 LTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           L +HDE++ E P+T+ E    +L   M +  S    +PL  +    K +
Sbjct: 837 LQIHDELIIEAPETESEKILRLLTEEMENAVS--LSVPLVVDARIGKSW 883


>gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7]
 gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7]
          Length = 856

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 83/506 (16%), Positives = 163/506 (32%), Gaps = 119/506 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  L  +  ++   G   D        + +  +   L +++  L  G   +    +
Sbjct: 455 FNEVEMPLCEVLASMEHYGVRADTNGIREFGKWLKKDIEALTKQIYDLAGG-EFNIASPK 513

Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   L+ + GL  +  T++   T   VL       P    V   R   ++ +   ++ L
Sbjct: 514 QLGEVLYEKLGLPAKKKTKSGYSTNAEVLEELADKHPIVRLVLEYR-TLTKLSSTYVDGL 572

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ + SDGR+    +    +RTGR S      QN+P                        
Sbjct: 573 LKEVESDGRVHSVFKQ-TETRTGRISSTEPNMQNIPVRKEIGR----------------- 614

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   +A EG  L+ AD + IE RVLA + G++   K FE G D++  T +
Sbjct: 615 --------NMRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHAMTAS 666

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + F +    V  + R+  K +   +                G+   + +  +        
Sbjct: 667 QVFGIPADMVLPEMRSAAKAVNFGII--------------YGIGAFSLSKDI-------- 704

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                        ++  K +     +VS+      +  E  I+N
Sbjct: 705 ----------------------GVSVAEAKQYIKNYLDNFPKVSQFM---DKTVEDGIKN 739

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G                             GR     ++      +    +   R     
Sbjct: 740 GYVTTI-----------------------FGRRRYIPELSATNKVMQAFGK---RAAMNA 773

Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET-PDTDEFNASML 647
                  +Q  + DI+   M+         K    ++L VHDE++ E  P+  +  +++L
Sbjct: 774 P------IQGAAADIIKIAMVKVYQRLKEEKLDARLILQVHDELIIEVTPEDKDKASAVL 827

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673
              M +    A  +P++    E + +
Sbjct: 828 KEEMENAVKLA--VPMEVSVGEGESW 851


>gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273]
 gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272]
 gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273]
          Length = 891

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 93/658 (14%), Positives = 181/658 (27%), Gaps = 123/658 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     K  L N ++     ++      LK    
Sbjct: 343 HKADIQGFG--IQNENGCYFISADIALKSDAFKAWLANAEMRKHTFDAKRAIVALKW-KG 399

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K           KM+E   + +              
Sbjct: 400 VDIQGID-FDLLIAAYLLDPADTDKDFRAV-----AKMKETHAVKSDEEVYGKGAKRAVP 453

Query: 146 NKPNHREAWRL--FGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                 E         Y      +   +  ++ E  +  E  L  +   +  +G  VD  
Sbjct: 454 ELDVVAEHVARKVHVLYDVKQTFIEELKKNEQYELFTELELPLARVLADMEVKGVKVDTE 513

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               + + +     +++QE+  L      +    ++L   LF    L +   T+   +T 
Sbjct: 514 RLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTS 572

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL            + + R    +     +  L++ ++ D     T      ++TGR 
Sbjct: 573 ADVLDKLMDHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P       +                         +R   +   EG  +  
Sbjct: 632 SSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYA 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RVLA +A +   ++AF+   D++  T    F V   +VT + R   K +   
Sbjct: 667 ADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L +   A         E +   + +   + ++  +       
Sbjct: 727 IVYGIS-----DYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTL 781

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P +  +      
Sbjct: 782 -----------------------------------------LNRRRYIPEITSRNFNLRS 800

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +NT  +          K    I+     D          
Sbjct: 801 F---------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLE 831

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           + G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 832 EEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887


>gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28]
 gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28]
          Length = 890

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 88/676 (13%), Positives = 179/676 (26%), Gaps = 159/676 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +  +  K  L N ++     ++      LK    
Sbjct: 342 HKADIQGFG--IQNENGCYFIQTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKW-KG 398

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A                   + K       +      ++ E +Y +
Sbjct: 399 IDIQGID-FDLLIAAYLLDPA------------DTDKDFRTVAKMKETHAVKSDEEVYGK 445

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDR 195
                     +  E+    V V  ++ +                  E  L  +   +  +
Sbjct: 446 GAKRAVPELEVVAEHVARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVK 505

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +     +++QE+  L      +    ++L   LF    L +   T
Sbjct: 506 GVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKT 564

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL            + + R    +     +  L++ ++ D     T     
Sbjct: 565 KTGYSTSADVLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQV 623

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371
            ++TGR S      QN+P       +                         +R   +   
Sbjct: 624 LTQTGRLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSE 658

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           EG  +  AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R  
Sbjct: 659 EGWIIYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQ 718

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +                    G++    +                            
Sbjct: 719 AKAVNF--------------GIVYGISDYGLSQ--------------------------- 737

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                     A     + + +    V E  +++    +   + G                
Sbjct: 738 ---NLGITRKAAAEFIEKYLESFPGVQEYMDDI---VKDAKQKGYVATLLN--------- 782

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR---- 607
                         R     ++ +             R            +Q  +     
Sbjct: 783 --------------RRRYIPEITSRNF---NLRSFAERTAMNTP------IQGSAADIIK 819

Query: 608 -------DILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
                  D          + G    ++L VHDE++ E P  +      L   +M      
Sbjct: 820 IAMIIMAD-------RLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIEL 872

Query: 658 AKGLPLKAEGYESKRY 673
           A  +PLK +      +
Sbjct: 873 A--VPLKVDYSYGPTW 886


>gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC
           BAA-613]
          Length = 930

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 99/678 (14%), Positives = 181/678 (26%), Gaps = 152/678 (22%)

Query: 30  VILFAFGFDDHPVELWDCVH---DPVMPQVLKEAL-ENTDVTIVAHNSY----------- 74
           V   A    +  +             + + L+     N +    A NS            
Sbjct: 367 VTGLALCLGEEDIYCLAAGEQITGEYLLEQLRALCGRNQEQDNQAQNSQGQDNPGVRELW 426

Query: 75  -FERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGE-ALKLSSQK---MEEG 126
             +   + A   L           V            A   +    L L+      +   
Sbjct: 427 ALDLKSMLAYLELK-DTDPVYDAGVAGYLLNPLKDTYAYDDLARDYLGLTVPSRADLLAK 485

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-TREIFKRLEPLSSKEQEL 185
           ++L     +GE +              W+                ++         E  L
Sbjct: 486 EDLGDALWRGEKNAVDCVCYMGYTA--WKAAAPLAGQLKDTGMYSLYT------DIEMPL 537

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
            Y    +   G  V+ A        + V   KL+QE+   T     +    ++L   LF 
Sbjct: 538 IYSLFHMEQEGVKVERAELKEYGDRLKVGIAKLEQEIYQETGH-EFNINSPKQLGEILFE 596

Query: 246 ETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           +  L     T+   +T   VL       P   ++ + R   ++        L   +  DG
Sbjct: 597 QMELPGGKKTKTGYSTAADVLEKLAPDYPVVQKILDYRQ-LTKLNSTYAEGLAAYIGEDG 655

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           R+ G       + TGR S      QN+P       E                        
Sbjct: 656 RIHGKFNQ-TITATGRISSTEPNLQNIPVRMALGRE------------------------ 690

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   +  EG   V AD + IE R+LA M+G++  ++A+ + +D++  T ++ F+V   
Sbjct: 691 -IRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAITASQVFHVPLD 749

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT  QR   K +                    G++                        
Sbjct: 750 EVTPLQRRNAKAVNF--------------GIVYGIS------------------------ 771

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                     +                + + +  V    + L    +Q  E G       
Sbjct: 772 ------AFGLSEGLSISRKEAVEYIDKYFETYPGVKTFLDGL---VKQGKEQGYVTTLY- 821

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                 GR     ++ +             R            +
Sbjct: 822 ----------------------GRRRPIPELKSANFMQRQF---GERVAMNSP------I 850

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655
           Q  + D++   M+   +          IVL +HDE++ ET   +      +    M    
Sbjct: 851 QGTAADVMKIAMIAVDRELKKRGLKSRIVLQIHDELLIETARDEIEAVKEILTDKMKHAA 910

Query: 656 SWAKGLPLKAEGYESKRY 673
                + L+ E    K +
Sbjct: 911 D--LRVSLEVEAEVGKSW 926


>gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
 gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552]
          Length = 873

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 96/662 (14%), Positives = 192/662 (29%), Gaps = 143/662 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--KACFNLD 87
           ++ FA  +++      D  +     Q  +  + +  +    ++       +       L+
Sbjct: 333 IVGFAI-YNNSEAYYIDIENAIKC-QNFQNFINDESIEKYGYDIK---KCINAAKWHGLE 387

Query: 88  IPIHRWICTLVLARSNGLPSALKA----VGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           I  +      + +       +LK     V E         +E       + KG   +   
Sbjct: 388 IK-NYVFDLQLASYILNP--SLKDEIRSVCEYYDYYDVLYDE-----EVYGKGAKKKIPE 439

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDV 201
                +H         Y   D  +  ++ +  +       E  +  +  ++  +G  +D 
Sbjct: 440 TTAIADHLIKQAKAI-YVLKDKAIE-KLKQENQFDLYKDVEMPVAKILASMEYQGAKIDK 497

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
            +   L      E   L++E+  L      +    ++L   LF + GL     T+   +T
Sbjct: 498 DVLKDLENQFGKEIEVLEKEIHQL-ANKNFNIASPKQLGEVLFEDLGLPNGKKTKTGYST 556

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              +L+  K + P   +V   R   S+     +  L E +  DG++         ++TGR
Sbjct: 557 SVDILNKLKDVHPIINKVLQYR-TLSKLYSTYIIGLQEQIFVDGKIHTIYNQA-LTQTGR 614

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
            S      QN+P  +   +                          +R   I      LV 
Sbjct: 615 LSSTDPNLQNIPVKTAEGK-------------------------LIRKAFIPEYDY-LVS 648

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
            D + IE RVLA +A  +  +KAF   +D++  T +  F V   +V    R   K +   
Sbjct: 649 FDYSQIELRVLAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVNF- 707

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    A  V                                
Sbjct: 708 -------------GIIYGMSDFGLAEQV------------------------------GV 724

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                    K + + +  +           E   +NG                       
Sbjct: 725 PVNEARNFIKRYFENYPEIKTYM---DNNIEFCKKNGYVTTMLN---------------- 765

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA- 617
                  R    R++               R+         + +Q  + DI+   M+   
Sbjct: 766 -------RKRFIREINEKNYM---------RQELGKRLAMNSPIQGSAADIIKVAMIKVD 809

Query: 618 -----TKAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671
                      ++L VHDE++ +   +  E    ++   MT+       + LK+EG  + 
Sbjct: 810 ELFKKHNLKSKMILQVHDELIFDVYKEELEEVMEVVAKGMTTAVK--MNVELKSEGSYAI 867

Query: 672 RY 673
            +
Sbjct: 868 NW 869


>gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Magnetospirillum magnetotacticum MS-1]
          Length = 485

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/554 (15%), Positives = 159/554 (28%), Gaps = 116/554 (20%)

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELW 186
                         R A      Y   D  VT  +++ ++P            + E+ L 
Sbjct: 27  GDVAGTGRNKVTFERVAIDKATAYAAEDADVTLRLWRMMKPRLVAERRVTVYETLERPLV 86

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            +   +   G  +D  +   L+        +L++E++             +++   LF +
Sbjct: 87  PVLARMERAGIRIDRNMLSRLSGDFSQILARLEEEIQEDAG-EKFQVSSPKQIGDVLFGK 145

Query: 247 TGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            GL     T +    T   +L    +   +  +   N  + ++      ++L E  + + 
Sbjct: 146 LGLPGAKKTPSGQWATPATLLEELAQAGHELPKKILNWRQLAKLKSTYTDSLQEHADRET 205

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
               T   L A+ TGR S      QN+P  +                             
Sbjct: 206 NRVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRR------------------------ 241

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   +A EGKKL+ AD + IE R+LA +A      +AFE G D++  T +  F V   
Sbjct: 242 -IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLD 300

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           Q+T D R   K +   + Y   A           L +             E +    ++ 
Sbjct: 301 QMTGDLRRRAKTINFGIIYGISA-----FGLADRLGIGREEASAFIKQYFERFPGIRDYI 355

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
              +++  E        G  C       R  +         + +        G A    +
Sbjct: 356 DTTKKSCREKGYVTTLFGRVCHYP--QIRSNNPSERA---SVERQAINAPIQGTAADIIR 410

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           R                                    +      L  +            
Sbjct: 411 R-----------------------------------AMTRMEAALEAKR----------- 424

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWA--K 659
                 + A  ++                +V E PD +      ++  +M   P+ A   
Sbjct: 425 ------LTARMLLQVHDE-----------LVFEVPDDEVEATIPVIAEVMEQAPAPALTL 467

Query: 660 GLPLKAEGYESKRY 673
            +PL  E   +  +
Sbjct: 468 SVPLVVEARAAGNW 481


>gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B']
          Length = 865

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/683 (14%), Positives = 202/683 (29%), Gaps = 145/683 (21%)

Query: 10  TRSPIDLTKCGICKYAEDVCV-ILFAFGFDDHPVELW---DCVHDPVMPQVLKEALENTD 65
           T    DL    +    E+  + +  A    D     +   +   +  +   +K   E  +
Sbjct: 305 TSVLADLDTAAVFAVLENDTLYMGVA----DGSNCYFIAANLAQEYDIIA-VKNFFEAKN 359

Query: 66  VTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL-----KLS 119
           ++ + HNS  + R +L     ++I       T + +       +   +  A      K  
Sbjct: 360 ISKILHNSK-DLRHILYRYQ-INIH-GNIFDTAIASYLINPLQSDYELSVAATGYDIKHV 416

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            Q +  GK  I                + +     +        D     ++F       
Sbjct: 417 DQLLGTGKNKITWASLASXIIVAQLGARASAMWTLQTAQLKELTDA-SMLDLFY------ 469

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  VD A      + +D     L+Q++ SL      +    ++L
Sbjct: 470 DIEMPLIEVLFDMEIAGITVDAAFLTAFGKKLDALIATLEQDIYSL-ADEKFNISSSKQL 528

Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF + G+     T+   +T   +L   K       +V   R    +     +  L++
Sbjct: 529 GLILFDKLGIPAGKKTKTGYSTAANILDKLKDKYVIVAKVLEYRQY-KKLHSTYVVGLLK 587

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            ++ + +L  T      + TGR S      QN+P      +E                  
Sbjct: 588 LLDKNNKLHSTFNQ-TVTATGRISSAEPNLQNIPIRLALGKE------------------ 628

Query: 357 LQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   I S +    + AD + IE RVLA ++ +    +AF  G D++ +T + 
Sbjct: 629 -------IRRAFIPSNDDYVFLDADYSQIELRVLASLSADANMQRAFLEGIDIHTSTASE 681

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V       D     +           A          G++  + A  ++        
Sbjct: 682 VFGV-------DTVTQAQRN---------AAKAVNFGVVYGISAFSLADDIQ-------- 717

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                                           + +  K+  V    + L    + T    
Sbjct: 718 ----------------------VSNQEATEYIENYFAKYPNVKHYLDSLITTSQAT--GY 753

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
              +  ++R++  ++                                T     R      
Sbjct: 754 GVTLLNRKRNIVELFSSNFN---------------------------TKEYGKRIAMNMP 786

Query: 596 KLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHL 650
                 +Q  + DI+ + M+    A       ++LTVHDE++ E   ++  +   +L   
Sbjct: 787 ------IQGTAADIIKKAMIQVHNALKGTRSTLILTVHDELLLEVHKSEIEHITKLLKTE 840

Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673
           M S    A  +PL  +      +
Sbjct: 841 MESAVKLA--VPLLVDVKSGXSW 861


>gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 864

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/651 (15%), Positives = 194/651 (29%), Gaps = 154/651 (23%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHR 92
           +   D  V              L   L+N DVT+   N+   + + +    +   I    
Sbjct: 352 YAVQDCTVY--PLED-----ADLVRLLDNADVTLEVFNAAPLYAKAMAAGGWGSSI---- 400

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                + A      ++                  K  I+           +     ++ +
Sbjct: 401 VWDGKLAAYLLDASAS------------------KYQISELTASYRAAAAFTC--ADYPD 440

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           A RL   +CK    +T          +  E  L  +   +   G  VD          + 
Sbjct: 441 AGRLADLFCKMKAEITA--CGEDSLYNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLR 498

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKL 269
            E  ++   +   T     +    ++L   LF   GL     T    +T    L S +  
Sbjct: 499 TELEQVLTRIHMETGSASFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLRD- 557

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P    +   R    +     +  L++ +  DGR+  T     A RTGR S      QN+
Sbjct: 558 YPLVEDILQYR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNI 615

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P  +                          +   +R+  IA  G  LV AD + IE R+L
Sbjct: 616 PIRTE-------------------------LGSQLRAYFIAKPGCVLVDADYSQIELRIL 650

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A + G++   +AF  GED++ +T A+ + +   +VT   R+  K +              
Sbjct: 651 AHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAIN------------- 697

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                 G                              +     A +        +   K 
Sbjct: 698 -FGIMYG------------------------------KGAYSLAKDIGVSVKEADAFLKN 726

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           +     +VS   ++     +                              +    GR   
Sbjct: 727 YLAAFPKVSGYMDKTIADAKAC--------------------------GYVSTLFGRRRA 760

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYD 623
             ++ ++   + ++  ++ R            +Q  + D++   M+         K    
Sbjct: 761 LPELASSNFNVRSSGERMAR---------NTPIQGTAADVIKLAMVRVWKRLRNEKMESR 811

Query: 624 IVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++LTVHDE++ E P  +   A+ +    M     +A  +PL  + +  K +
Sbjct: 812 LILTVHDELIVEAPQAEAEKAAQILREEMEGCVQYA--VPLSTDVHAGKNW 860


>gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18]
 gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18]
          Length = 890

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/667 (13%), Positives = 181/667 (27%), Gaps = 141/667 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +  +  K  L N ++     ++      LK    
Sbjct: 342 HKADIQGFG--IQNENGCYFIQTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKW-KG 398

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K      K   ++    K     + KG         
Sbjct: 399 IDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 455

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      +   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 456 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 514

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 515 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 573

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 574 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 632

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 633 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 667

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +     
Sbjct: 668 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNF--- 724

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G++    +                                     
Sbjct: 725 -----------GIVYGISDYGLSQ------------------------------NLGITR 743

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
            A     + + +    V E  +++    +   + G                         
Sbjct: 744 KAAAEFIEKYLESFPGVQEYMDDI---VKDAKQKGYVATLLN------------------ 782

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR-----------DI 609
                R     ++ +             R            +Q  +            D 
Sbjct: 783 -----RRRYIPEITSRNF---NLRSFAERTAMNTP------IQGSAADIIKIAMIIMAD- 827

Query: 610 LAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                    + G    ++L VHDE++ E P  +      L   +M      A  +PLK +
Sbjct: 828 ------RLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 879

Query: 667 GYESKRY 673
                 +
Sbjct: 880 YSYGPTW 886


>gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3]
 gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3]
          Length = 890

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/667 (13%), Positives = 181/667 (27%), Gaps = 141/667 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +  +  K  L N ++     ++      LK    
Sbjct: 342 HKADIQGFG--IQNENGCYFIQTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKW-KG 398

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K      K   ++    K     + KG         
Sbjct: 399 IDIQGID-FDLLIAAYLLDPADTDKDFRTVAK--MKETHAVKSDEEVYGKGAKRAVPELE 455

Query: 146 NKPNHREAWRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y      +   +  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 456 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 514

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 515 RNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 573

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            + + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 574 VLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLSS 632

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   +   EG  +  AD
Sbjct: 633 TDPNLQNIPIRLEEGRK-------------------------IRQAFVPSEEGWIMYAAD 667

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +     
Sbjct: 668 YSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNF--- 724

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G++    +                                     
Sbjct: 725 -----------GIVYGISDYGLSQ------------------------------NLGITR 743

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
            A     + + +    V E  +++    +   + G                         
Sbjct: 744 KAAAEFIEKYLESFPGVQEYMDDI---VKDAKQKGYVATLLN------------------ 782

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR-----------DI 609
                R     ++ +             R            +Q  +            D 
Sbjct: 783 -----RRRYIPEITSRNF---NLRSFAERTAMNTP------IQGSAADIIKIAMIIMAD- 827

Query: 610 LAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                    + G    ++L VHDE++ E P  +      L   +M      A  +PLK +
Sbjct: 828 ------RLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVD 879

Query: 667 GYESKRY 673
                 +
Sbjct: 880 YSYGPTW 886


>gi|332670348|ref|YP_004453356.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
 gi|332339386|gb|AEE45969.1| DNA polymerase I [Cellulomonas fimi ATCC 484]
          Length = 915

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/670 (14%), Positives = 180/670 (26%), Gaps = 141/670 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNL 86
                 A          +D        +  L   L +     V H S      L      
Sbjct: 358 GDAWGIALADASGQAAAFDLSQVDPADENALAAWLADPAQPKVVHASKEAWHALA---GR 414

Query: 87  DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
            +P+      T + A              A  L    +   +  +         +   D 
Sbjct: 415 GMPLAGVTFDTELAAYLCQPDR------RAYDLGDLAIGYLRRELGSEDAQVGGQGALDL 468

Query: 146 NKPNHREAWRLFGEY-CKGDV--TVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVD 200
                 E  R         D+   +  E+  R         E  L  +   +   G   D
Sbjct: 469 ELDGTDEGRRAAVRASAVRDLADVLAGELGDRGADGLLRDLELPLVDVLARMERTGIATD 528

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257
            A   +L +  D +      E  ++    V +    ++L+  LF + G+      +T   
Sbjct: 529 GAYLSSLEKSFDAQVQDAAAEAYAVIGREV-NLGSPKQLQEVLFDQLGMPKTKKIKTGYT 587

Query: 258 TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           T    L+    +   P    +  +R          +  L+ ++  DGR+  T Q   A+ 
Sbjct: 588 TDAASLTDLFARTQHPFLEHLLAHRDAIRLRQT--VEGLLRSVAPDGRIHTTFQQTIAA- 644

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK- 374
           TGR S      QN+P  + +                            +R   +  +G  
Sbjct: 645 TGRLSSADPNLQNIPIRTEAGR-------------------------QIRRAFVVGDGYE 679

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+ AD + IE R++A ++G++  + AF +GEDL+    +R F V   +VT   R+  K 
Sbjct: 680 TLLTADYSQIEMRIMAHLSGDEGLIDAFRSGEDLHSYVGSRVFGVPTDEVTPAMRSKIKA 739

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           M   L Y            +  L                                     
Sbjct: 740 MSYGLAYG-----LSSYGLSQQL------------------------------------- 757

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                 +    + + +  +   V +    +      T                       
Sbjct: 758 --TIEVSEAAGLMQDYFARFGGVRDYLTGVVDVARTT----------------------- 792

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                     GR     D+ ++            R            +Q  + D++   M
Sbjct: 793 ---GYTQTILGRRRYLPDLTSDN---RQRREAAERMALNAP------IQGSAADLIKVSM 840

Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA----KGLPL 663
           +   +          ++L VHDE+V E    +      L    M +    A      +PL
Sbjct: 841 LGVDRELTRRGLASRLLLQVHDELVLEVAAGEREEVEALVREQMGAAGDAATDGPLDVPL 900

Query: 664 KAEGYESKRY 673
                    +
Sbjct: 901 DVSVGVGGSW 910


>gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
 gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306]
          Length = 864

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/651 (15%), Positives = 193/651 (29%), Gaps = 143/651 (21%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-IC 95
           FD    EL D   +    + L   LE+       H +     +L+      I ++     
Sbjct: 338 FDAIHAELADLSAEDD--KALAAWLESDA-EKFLHEAKAAYHMLQ---GRGITLNGIAHD 391

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           T + A                    Q+  E  ++  R  +          +  +      
Sbjct: 392 TALAAYLLRPG--------------QRTYELPDVYQRHLRKTLEASSEQLSLLDDTGGID 437

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDV 213
                 +  V +T+ + +        E E+    +   +   G  V+V    +  ++   
Sbjct: 438 SAVAIMELTVELTKALQEIDSYQLYAELEIPLVSILAKMEATGIAVNVDTLESQQEVFAN 497

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK--K 268
                ++    L      +    ++L+T LF    L     T+   +T  + +       
Sbjct: 498 HVAAEEKAARELAGDDTLNLNSPKQLQTVLFETLDLPKTKKTKTGYSTAAKEIEQLAINH 557

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P    +  +R    +     L  L++ +  DGR+  T     A  TGR S      QN
Sbjct: 558 PHPFLDHLLAHR-EYQKLKTT-LEGLIKTVQPDGRIHTTFNQTVA-STGRLSSTEPNLQN 614

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEAR 387
           +P  + S                            +RS  I  EG   L+ AD + IE R
Sbjct: 615 IPVRTESGRT-------------------------IRSAFIVGEGYETLLTADYSQIEMR 649

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           V+A ++ +   ++A++ GEDL+    +R F+V   +VT + R   K M   L        
Sbjct: 650 VMAHLSQDPGLIEAYKEGEDLHNYVGSRVFDVPVDKVTSELRRRVKAMSYGLV------- 702

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   GL+    +  +   +                                 ++  
Sbjct: 703 -------YGLSAFGLSQQLSIPAG------------------------------EAKKTM 725

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            A+  +   V +   ++ +   +                          +       GR 
Sbjct: 726 DAYFDRFGGVKKYLADVVEQARK--------------------------DGYTATVFGRR 759

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD 623
               ++ ++            R            +Q  + DI+   M+   +A       
Sbjct: 760 RYLPELISDN---RLARENAERAALNAP------IQGTAADIIKVAMIRVDQALEGFKSR 810

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           ++L VHDE+V E    +      +    M ++ S    +PL+        +
Sbjct: 811 VLLQVHDELVVEVAPGELNKVQEIVEREMDASIS--LRVPLEVSAGTGDNW 859


>gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100]
          Length = 864

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/667 (14%), Positives = 196/667 (29%), Gaps = 162/667 (24%)

Query: 33  FAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
            A   D   + + D  H          DP   + +K  L +       H++      L  
Sbjct: 329 LAVDIDGERLTVLDGDHVGVEMDLADLDPKDEKAIKTWLADPASPKWFHDAKRAFHALA- 387

Query: 83  CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
              L++         + A        +  +G+ L                       +  
Sbjct: 388 PQGLELDGVE-HDASIAAYLLRPDVRISGLGDIL-----------------------QSQ 423

Query: 143 YDRNKPNHREAWRLFGEYCKGDVT--VTREIFKRLEPLSSKEQEL--WYLDQTINDRGYC 198
             R  P + + +         D+   +T ++    +     + E+    +   +   G  
Sbjct: 424 AGRELPANADGFDRA--QAVRDLVKVLTEKLAAAKQEELYYDLEVPLCLILARMEHEGIA 481

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           VD      L+     +  +       L      +    ++L+  LF +  L     T+  
Sbjct: 482 VDGEHLQELSNDYAAKIDEEIAAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTG 541

Query: 257 -TTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            +T    L         P    +  +R    +     ++ L+EA+  DGR+  T    GA
Sbjct: 542 YSTAAAELEKLTAQTNHPFLAHLMAHR-EYQKMKTT-IDGLIEAIGDDGRIHTTFNQKGA 599

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR S      QN+P  + +                            +R+   A  G
Sbjct: 600 A-TGRLSSSDPNLQNIPVRTDAGRR-------------------------IRAAFHAGWG 633

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           + L+ AD + IE RV+A ++ ++  ++A+++GEDL+    +R F+V   QVT + R   K
Sbjct: 634 ETLLTADYSQIEMRVMAHLSQDEGLIEAYKSGEDLHNYVGSRVFDVPVDQVTPELRRRVK 693

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   L                GL+    +                              
Sbjct: 694 ALSYGLV--------------YGLSAFGLSQQ---------------------------- 711

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                     + + + +  +   V    +E+    ++T                      
Sbjct: 712 --LGISAGEAKVIMENYFTRFGGVKRYLDEVVHQAKET---------------------- 747

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                      GR     ++ ++            R            +Q  + DI+   
Sbjct: 748 ----GYTETLYGRRRYLPELNSSN---RVARENAERAALNAP------IQGTAADIIKLA 794

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+   +A         ++L VHDE+V E    +    S L    M +       +PL+  
Sbjct: 795 MLRVDRAIREQNLKSRVLLQVHDELVVEVAKGELDKVSELVQREMDAAAR--LRVPLEIS 852

Query: 667 GYESKRY 673
               K +
Sbjct: 853 AGHGKNW 859


>gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7]
          Length = 877

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/604 (14%), Positives = 171/604 (28%), Gaps = 142/604 (23%)

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                 + A        LK       ++   +                + L         
Sbjct: 390 GIFDAAIAAYLINP---LKDSYTYDGIAQDFLG--------MTVPSRADWLKKMTLTEAS 438

Query: 152 EA-WRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVD 200
           E     FG Y      +  + +  L+               E  L Y    +   G  V+
Sbjct: 439 EKEKESFGHYLAYSAMIPVQAYSTLKKRLEETGMDRLFDEIEMPLVYALYDMEKAGIAVE 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                     +     +L++ +  L      +    ++L   LF + GL     T+   +
Sbjct: 499 KDALAEYGSRLTGRIDELEKNIYELAG-ESFNINSPKQLGIILFEKLGLPFAKKTKTGYS 557

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRT 316
           T   +L   +   P   Q+   R   ++      + L   +  D  R+ G       + T
Sbjct: 558 TSADILEKLRTYDPIVGQILEYRQ-LTKLKSTYADGLAGYIRPDDQRIHGKFNQ-TITAT 615

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P                             +   +R   +  E    
Sbjct: 616 GRISSTEPNLQNIPVR-------------------------MELGRLIRKVFVPKEDCIF 650

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + IE RVLA MAG++  ++A++  +D++  T ++ F+    +VT  QR+  K + 
Sbjct: 651 VNADYSQIELRVLAHMAGDEHLIQAYKEAQDIHRMTASQVFHTPFDEVTPAQRSNAKAVN 710

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y            +  L++                                     
Sbjct: 711 FGIVYGIS-----SFGLSQDLSI------------------------------------- 728

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  E   + + + +  +      L ++ E   E G A+                  
Sbjct: 729 --TKKEAENYIQQYFRTYPGIKAF---LDRSVEDAKEKGYAVTL---------------- 767

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                   GR     ++ ++     +      R            +Q  + DI+   M+ 
Sbjct: 768 -------FGRRRPVPELLSSNFMQRSF---GERIAMNSP------IQGTAADIIKIAMVR 811

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYE 669
             +          ++L +HDE++ E    +      +    M    + A  +PL+ + + 
Sbjct: 812 VNRRLKRQHMKSRLILQIHDELLIEAVLDEVDAVKAILKEEMEHAATLA--VPLEIDMHT 869

Query: 670 SKRY 673
              +
Sbjct: 870 GHNW 873


>gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
 gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812]
          Length = 878

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/680 (13%), Positives = 186/680 (27%), Gaps = 163/680 (23%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++           F + +          D +   + K AL             ++   
Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYVSTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376

Query: 79  --VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
             VL +   +D+P      + +                   +   ++    +L   +   
Sbjct: 377 SKVLLSHLGVDLP-APAFDSRLAKYLLS------------TVDDNELSTIAQLYTDYVLD 423

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-------EIFKRLEPLS--SKEQELWY 187
                     K    E   L     +  V +         ++ +  +       EQ L  
Sbjct: 424 SDEAVYGKGVKRAVPEKAVLLSHLARKIVVLNHSEKVMLGKLTEHQQASLLFDMEQPLAN 483

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  V       + +        L QE+  L      +    ++L   LF + 
Sbjct: 484 VLAKMEIAGISVKKETLQEMEKANQAAIDNLTQEIYDLAGM-EFNINSPKQLGELLFDKM 542

Query: 248 GLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            L       T+   +T   VL     ++P   ++   R   ++     +  L + +  DG
Sbjct: 543 QLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQ-IAKLQSTYIVGLQDFILKDG 601

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           ++         ++TGR S      QN+P                                
Sbjct: 602 KIHTRYLQD-LTQTGRLSSVDPNLQNIPVRLEQGR------------------------- 635

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA- 420
            +R   +     + L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +  
Sbjct: 636 LIRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFNEGADIHTSTAMRVFGIEK 695

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           P  VT + R   K +                    G++    A+                
Sbjct: 696 PEDVTPNDRRNAKAVNF--------------GIVYGISDYGLAN---------------- 725

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                                  ++  + + +++  + +    + +  +           
Sbjct: 726 --------------NLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKD---------- 761

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                              +     R     D+      +        R           
Sbjct: 762 ----------------KGYVETLFHRRRELPDINARNFNVRQF---AERTAINSP----- 797

Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTS 653
            +Q  + DIL   M+N  KA         ++L VHDEI+ E P  +      L    M S
Sbjct: 798 -IQGSAADILKIAMINLDKALVEGKFKTKMLLQVHDEIILEVPKDELEAIEKLVKETMES 856

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                  +PL A+    + +
Sbjct: 857 AIE--LSVPLVADESAGQTW 874


>gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
 gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333]
          Length = 910

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 99/669 (14%), Positives = 179/669 (26%), Gaps = 143/669 (21%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFN 85
                  A    D      D        +  L + L + +     H++        A   
Sbjct: 360 SGDAWALAIADADGAALGIDLAEIDPADEKVLAQWLADPEAPKAVHDAK---PAWHALTG 416

Query: 86  LDIPIHRWI-CTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKEL---IARFCKGET 138
             + +   +  T + A           L  +            +  E    +        
Sbjct: 417 RGLEVRGVVMDTALAAYLCHPDQRSYDLADLVVRYLHRELPRTDLDETGQGMLDLDADSG 476

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
            +    R       A  L  E          E           E  L      +   G  
Sbjct: 477 AKSAGARAVAVVELAGPLAEEVADRGAQALLE---------DVELPLLRTLAEMEHDGIG 527

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257
            DV     + +  D    +            V +    ++L+  LF + G+     T+T 
Sbjct: 528 ADVEYLRGIEREFDAVVERAALGAYEAIGRQV-NLGSPKQLQEVLFDDLGMPKTRRTKTG 586

Query: 258 --TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
             T    L+    K   P    +  +R  A R     +  L+ ++  DGR+  T Q   A
Sbjct: 587 YTTDADALADLYVKTEHPFLEHLLAHR-EAIRLRQT-VEGLLRSVAPDGRIHTTFQQTIA 644

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR S      QN+P  +                              +R   +  EG
Sbjct: 645 A-TGRLSSADPNLQNIPIRTEEG-------------------------YRIREGFVVGEG 678

Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+ AD + IE R++A ++G++  ++AF +GEDL+    +R F V   +VT   R+  
Sbjct: 679 YETLLTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYVGSRVFGVPTDEVTSAMRSKI 738

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K M   L Y            +  L+++                                
Sbjct: 739 KAMSYGLAYG-----LSAFGLSKQLSIDVA------------------------------ 763

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                        +   +  +   V +  + +     Q                      
Sbjct: 764 ---------EARTLMDDYFDRFGGVRDYLSGVVAQARQ---------------------- 792

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR     D+ ++            R            +Q  + D++  
Sbjct: 793 ----VGYTETLMGRRRYLPDLTSDN---RQRREMAERMALNAP------IQGSAADLIKV 839

Query: 613 GMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
            M+   +          ++L VHDE+V E    +      L    M +       +PL  
Sbjct: 840 AMLGVHRQMGEAGMSSRLLLQVHDELVLEVAPGEREALEELVRAQMGAAAE--LSVPLDV 897

Query: 666 EGYESKRYR 674
                + +R
Sbjct: 898 SVGTGRSWR 906


>gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115]
          Length = 880

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 186/660 (28%), Gaps = 149/660 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           +++P        +          + L  +        L +     GK       + E   
Sbjct: 388 IELPAAS-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E      E              +L+ L   EQ L ++   +   G  V+
Sbjct: 447 EHLARKIQVLLETEEPMQEQ--------LRAHNQLDLLLEMEQPLAFVLAKMEIAGIKVE 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    +     L QE+  L      +    ++L T LF + GL L     T+  
Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++   R   S+     +  L EA+ +DG++         ++
Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +      
Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433
            L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K
Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A+                             
Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                   A +   + + ++   +      + +                           
Sbjct: 728 -NLGISRKAAKDYIETYFERFPGIKNYMETIVREARD----------------------- 763

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+N  +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 812 MINLDRALTENNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R]
 gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316]
 gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909]
 gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111]
 gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 880

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/695 (14%), Positives = 197/695 (28%), Gaps = 162/695 (23%)

Query: 8   FETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALE 62
            E  S  D       G   + ED    L    + +          +  + Q    K+AL 
Sbjct: 315 TEMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSNVSLLQEALFKKALS 368

Query: 63  NTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGE 114
                       ++     VL   FN+D+P      T +           L S +  +  
Sbjct: 369 KP--IKT-----YDFKRSKVLLNRFNIDLP-EPAFDTRLAKYLLSTTEDNLVSTIARLYT 420

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L L +     GK       +                   +        +  + +++   
Sbjct: 421 NLPLDTDDAVYGKGAKRAIPEKTR----------FLEHLAKKVKVLVDSEANIMQQLKAN 470

Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            +       EQ L  +   +  RG  V     + +          L QE+  L      +
Sbjct: 471 EQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ-EFN 529

Query: 233 SRCLEKLKTWLFLETGLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L   LF   GL +     T+   +T   VL     ++P   ++   R   ++  
Sbjct: 530 INSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQ-ITKLQ 588

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L + +  DG++         ++TGR S      QN+P                 
Sbjct: 589 STYIIGLQDYILEDGKIHTRYVQD-LTQTGRLSSSDPNLQNIPVRLEQGR---------- 637

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                           +R   + SE    L+ +D + IE RVLA ++ ++  + AF+ G 
Sbjct: 638 ---------------LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGA 682

Query: 407 DLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           D++ +T  R F +  P  VT + R   K +                    G++    +  
Sbjct: 683 DIHTSTAMRVFGIEKPENVTPNDRRNAKAVNF--------------GIVYGISDFGLS-- 726

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                 ++    + +++  +      + 
Sbjct: 727 ----------------------------HNLGIPRKLAKQYIDTYFERYPGIKNYMETVV 758

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +  +                              +     R     D+ +    +     
Sbjct: 759 REAKD--------------------------KGYVETLFHRRRSLPDINSRNFNIRQF-- 790

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT 639
              R            +Q  + DIL   M+N  +          ++L VHDEIV E P+ 
Sbjct: 791 -AERTAINSP------IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNE 843

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +      L    M S  S    +PL A+    + +
Sbjct: 844 EIGAIRELVTKTMESAIS--LSVPLIADENAGETW 876


>gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3]
          Length = 857

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 102/655 (15%), Positives = 198/655 (30%), Gaps = 162/655 (24%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHR 92
           +   D  V L +          L   L+N DVT+   NS   + + +    +   I    
Sbjct: 345 YAVQDTTVYLLE-------DAELLRLLDNADVTLDVFNSAPLYAKAMAAGGWGSSI---- 393

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                + A      ++                  K  I+           +     ++ +
Sbjct: 394 VWDGKLAAYLLDASAS------------------KYQISELIPAYKAAAAFTCT--DYPD 433

Query: 153 AWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
           A RL   + +    +T      ++      +  E  L  +   +   G  VD        
Sbjct: 434 AGRLADLFARMKAEITACGEDALY------NEIEFPLAQVLADMTRTGVLVDKDGIEQFG 487

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSS 265
             +  E  ++   +   T     +    ++L   LF   GL     T    +T    L S
Sbjct: 488 VKLREELEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLES 547

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            ++  P    V   R    +     +  L++ +  DGR+  T     A RTGR S     
Sbjct: 548 LRE-YPLVEDVLQYR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPN 604

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +                          +   +R+  +A  G  LV AD + IE
Sbjct: 605 LQNIPIRTE-------------------------LGSQLRAYFVAKPGCVLVDADYSQIE 639

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA + G++   +AF  GED++ +T A+ + +  ++VT   R+  K +          
Sbjct: 640 LRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAIN--------- 690

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G                              +     + +        + 
Sbjct: 691 -----FGIMYG------------------------------KGAYSLSKDIGVTVKEADA 715

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
             K +      VS   ++     +                           N  +    G
Sbjct: 716 FLKNYLAAFPNVSGYMDKTIADAK--------------------------ANGYVSTLFG 749

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TK 619
           R     ++ +    +  +  ++ R            +Q  + D++   M+         K
Sbjct: 750 RRRTLPELASTNFNVRASGERMAR---------NTPIQGTAADVIKLAMVRVWKRLRDEK 800

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
               ++LTVHDE++ E P+ +   A+ +    M     +A  +PL  + +  K +
Sbjct: 801 MASRLILTVHDELIVEAPEVEAEQAARILREEMEGCVQYA--VPLSTDVHAGKNW 853


>gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
 gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965]
          Length = 857

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/596 (15%), Positives = 180/596 (30%), Gaps = 140/596 (23%)

Query: 92  RWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
           ++    ++A              VGE  K+ S  ++E           +    + D    
Sbjct: 384 KFYDVTLIAYLLDPTHVTYNRSYVGELFKVPSIYIDEN------ASFEQNGNMIADFLLA 437

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            +  ++ L     K D+    +           EQ L  +   +   G  +D      + 
Sbjct: 438 LYTSSYELLV---KNDIEKLFK---------EVEQPLIEVLAEMEKNGISIDEENWKKVR 485

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
           + +  +  KL  E+         +    ++L   LF + G+     T+   +T   VL +
Sbjct: 486 KNMKEKEEKLLLEIYREAG-EEFNVNSPKQLSHILFDKMGMPTGKKTKTGYSTAADVLEN 544

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                P    +   R   ++     L+ +   +  + +   T      + TGR S     
Sbjct: 545 LAIDYPFVKNILEYR-TLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPN 603

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384
            QN+P  +   +                          +RS  +  EG    + +D + +
Sbjct: 604 LQNIPVRTEEGK-------------------------VIRSLFVPGEGYDFFISSDYSQV 638

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA M+G++  ++AFE  ED++  T +  F V   +VT +QR+  K +   + Y   
Sbjct: 639 ELRVLAHMSGDEGLIRAFENKEDIHRRTASEVFGVPFEEVTSEQRSHAKAVNFGIIYGIS 698

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                    +  L                                              +
Sbjct: 699 -----DFGLSKQLG---------------------------------------ISRKKAD 714

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
              K + +++  + E   ++ +   +T +                          +    
Sbjct: 715 EYIKTYLKRYPGIHEFMKKMTEEARKTGK--------------------------VKTLF 748

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618
           GR     D+ +             R            +Q  + DI+   M+         
Sbjct: 749 GRYRDLPDINSKNF---QRRSFAERTAMNTP------IQGSAADIMKIAMIQVYGKMKKG 799

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           K    I+L VHDE+V E    +      +L   M S  S    + L A+ +  K +
Sbjct: 800 KYKSRILLQVHDELVIEAVKEEVEEISKLLKETMESVVS--LKVKLVADVHVGKNW 853


>gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29]
 gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29]
          Length = 890

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/676 (13%), Positives = 179/676 (26%), Gaps = 159/676 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +  +  K  L N ++     ++      LK    
Sbjct: 342 HKADIQGFG--IQNENGCYFIQTDIALASEAFKAWLANGEMRKRTFDAKRAIVALKW-KG 398

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A                   + K       +      ++ E +Y +
Sbjct: 399 IDIQGID-FDLLIAAYLLDPA------------DTDKDFRTVAKMKETHAVKSDEEVYGK 445

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDR 195
                     +  E+    V V  ++ +                  E  L  +   +  +
Sbjct: 446 GAKRAVPELEVVAEHVARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVK 505

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  VD      + + +     +++QE+  L      +    ++L   LF    L +   T
Sbjct: 506 GVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT-EFNINSPKQLGVILFENLNLPVIKKT 564

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL            + + R    +     +  L++ ++ D     T     
Sbjct: 565 KTGYSTSADVLDKLMNHHEIIPNILHYRQ-LGKLNSTYIEGLLKVVHEDSSKIHTRFNQV 623

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371
            ++TGR S      QN+P       +                         +R   +   
Sbjct: 624 LTQTGRLSSTDPNLQNIPIRLEEGRK-------------------------IRQAFVPSE 658

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           EG  +  AD + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R  
Sbjct: 659 EGWIMYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQ 718

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +                    G++    +                            
Sbjct: 719 AKAVNF--------------GIVYGISDYGLSQ--------------------------- 737

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                     A     + + +    V E  +++    +   + G                
Sbjct: 738 ---NLGITRKAAAEFIEKYLESFPGVQEYMDDI---VKDAKQKGYVATLLN--------- 782

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR---- 607
                         R     ++ +             R            +Q  +     
Sbjct: 783 --------------RRRYIPEITSRNF---NLRSFAERTAMNTP------IQGSAADIIK 819

Query: 608 -------DILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSW 657
                  D          + G    ++L VHDE++ E P  +      L   +M      
Sbjct: 820 IAMIIMAD-------RLDEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIEL 872

Query: 658 AKGLPLKAEGYESKRY 673
           A  +PLK +      +
Sbjct: 873 A--VPLKVDYSYGPTW 886


>gi|313889726|ref|ZP_07823368.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121771|gb|EFR44868.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 881

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 93/670 (13%), Positives = 184/670 (27%), Gaps = 163/670 (24%)

Query: 34  AFGFDDHPVELW----DCVHDPVMPQVL-KEALENTDVTIVAHNSYFERT---VLKACFN 85
           AF + +          D +  P+  +VL K  L             ++     VL +   
Sbjct: 341 AFAWGNQETIYVSQNPDLLRQPLFTKVLEKPILT------------YDFKRTKVLLSHLG 388

Query: 86  LDIPIHRWICTLVLARSNGL--PSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           ++I         +          + L  +        L S +   GK +   F   +   
Sbjct: 389 VEISEAA-FDARLANYLLSNVDDNELATIARLHTSISLESDEAVYGKGVKRAFPAKDLLF 447

Query: 141 CLYDRNK----PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
               R       +         E  + D      ++ ++E        L  +   +   G
Sbjct: 448 AHLARKVAVLATSKPVMLEKLAENGQSD------LYYKIE------LPLANVLAKMEIAG 495

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDL 254
             V+      + +        L QE+  L      +    ++L + LF +    L +   
Sbjct: 496 IKVNKLTLMEMAEQNRNIIDALTQEIYDLAG-EEFNINSPKQLGSILFEKMQLPLTMTKK 554

Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+   +T   VL     + P   ++ + R   ++     L  L + +  DG++       
Sbjct: 555 TKTGYSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYLIGLQDYIMEDGKIHTRYVQD 613

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             ++TGR S      QN+P                                 +R     S
Sbjct: 614 -LTQTGRLSSTDPNLQNIPIRMEQGR-------------------------LIRKAFTPS 647

Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            +   L+ +D + IE RVLA ++G++  + AF    D++  T  R F +           
Sbjct: 648 SDDWLLLSSDYSQIELRVLAHISGDEHLIAAFNDNADIHTATAMRVFGIEKEADVTANDR 707

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
                                    G++    ++                          
Sbjct: 708 R-------------NAKAVNFGIVYGISDFGLSN-------------------------- 728

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                              + +++  + +  + + +  +                     
Sbjct: 729 ----NLGISRQKARDYIDTYFERYPGIKKYMDAVVREAKD-------------------- 764

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                    +     R     D+ +             R            +Q  + DIL
Sbjct: 765 ------KGYVETLFKRRRELPDINSRNF---NVRSFAERTAINSP------IQGSAADIL 809

Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663
              M+N  KA         ++L VHDEIV E P  +      L   +M      A  +PL
Sbjct: 810 KIAMINLDKALVDGEFKAKMLLQVHDEIVLEVPKQELAAVRQLVKEIMEDAVDLA--VPL 867

Query: 664 KAEGYESKRY 673
           +A+    + +
Sbjct: 868 RADENSGQSW 877


>gi|169346903|ref|ZP_02865851.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
 gi|169296962|gb|EDS79086.1| DNA-directed DNA polymerase [Clostridium perfringens C str.
           JGS1495]
          Length = 642

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/721 (14%), Positives = 185/721 (25%), Gaps = 155/721 (21%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51
             +  D E     +   L +           ++  +    +         H         
Sbjct: 23  KVVAFDIECAPKNEWFRLNEKKAALDPNKGHIVGISLSVKEGTGIYIPLRHRNGKNVEDV 82

Query: 52  -VMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
             M   LK     N  +  VAHN  FE + L     + I       T+      G     
Sbjct: 83  HRMIAWLKGFVFHNESLIKVAHNIAFESSFLYEY-GIVIK-EPVFDTM-----LGSMLTF 135

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           K+ GE   L    ++   + I           +   +  N     +    Y   D     
Sbjct: 136 KSFGEFRTLRECGLKLLAKEIFNEDLPSFSHVVNGTHFDNLHSEHKETVRYACADSDYAL 195

Query: 170 EIFKRLEPLSSKEQELWYLDQT------------INDRGYCVDVALAHTLNQIVDVERTK 217
            ++               L               +   G  ++  L    N+  + E   
Sbjct: 196 RLYNWCLEWFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEELEF 255

Query: 218 LDQELESLTYGLVSSSR--CLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKK--- 268
             +E+ S     V+       +  K +LF +  L +    E    +     L    +   
Sbjct: 256 CKREILSFANREVNLGSNLQTQDFKDFLFKDLRLPVLKICEKGEPSLDDESLILLDEWCL 315

Query: 269 ----LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                    I+      R S+     +  L + +N +     T  F   + TGR+S    
Sbjct: 316 RNFKKGTYLIECIKRHKRVSKLKSTYIEALGKLLNCETGKIHTDFFSMGTETGRFSSRNP 375

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QNLPR    H                           +R   I S     +  D + I
Sbjct: 376 NLQNLPRKDNDHLG-------------------------IRKLFIPSPNHVFLDFDFSQI 410

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT-------KDQRAIGKVMEL 437
           E RV A+   ++  + AF    D++  T +  +N+   + T       K +R I K    
Sbjct: 411 ELRVGAYYCRDRKMINAFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKNCNF 470

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + +    K  QK     G                                         
Sbjct: 471 GVFFGLFPKGLQKTLMYKG--------------------------------------GIN 492

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                CER+ +  +  + R+S    +  +                               
Sbjct: 493 ISEKDCERIIRNIKDGYPRLSTWQKDTVKVA--------------------------AYR 526

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                 +GR    +D+ +             +            +Q  + DI+   M   
Sbjct: 527 GYTRSRTGRRRYLKDIKSKD---------WNKRAVSERCALNTPIQGTAADIIKIAMARI 577

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESK 671
                 +     +L +HDE++ E  +       + +   M   P     +PLK E     
Sbjct: 578 LRELPEREYIKPLLQIHDELLFEVREDKVNEAIAFIKDCMERTPFKDFNIPLKVEYSVGY 637

Query: 672 R 672
            
Sbjct: 638 N 638


>gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS]
 gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS]
          Length = 929

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 101/677 (14%), Positives = 195/677 (28%), Gaps = 128/677 (18%)

Query: 16  LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNS 73
           L   G    Y  D   +       D      D        +  L   L +       H +
Sbjct: 357 LAVVGTHLAYDADATALAIVAA--DGDGRYIDTTSLDPDDEAALASWLADPGPPKALHEA 414

Query: 74  YFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKE 128
                 L         +      T + A          +L  +    L+   +     ++
Sbjct: 415 KLAMHDLA---GRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRADNPAQQ 471

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
            ++     +  +    +       A     +    D  + R        L   E  +  +
Sbjct: 472 QLSLLDDSDGGDDQAVQTLILRAVAVLDLAD--ALDEELARI--DSSSLLGRMELPVQRV 527

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  VD+     L            +   ++    + +    ++L+  LF E  
Sbjct: 528 LAEMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELA 586

Query: 249 LHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           +     T+T   T    L S       P    +  +R  A+R  V  ++ L+ ++ SDGR
Sbjct: 587 MPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVASDGR 644

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +  T     A+ TGR S      QN+P  + +   +            S    +      
Sbjct: 645 IHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEAGRRIRDAFVVESRPPGSGGGAVFT---- 699

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
                      +L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F+V   +
Sbjct: 700 -----------ELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVPIDE 748

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT D R   K M   L                GL+    A  +K                
Sbjct: 749 VTPDLRRRVKAMSYGL--------------AYGLSAYGLAAQLKI--------------- 779

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                               +     +  +   + +   ++     +             
Sbjct: 780 ---------------STEEAKVQMDQYFARFGGIRDYLRDVVDQARK------------- 811

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                        +       GR     ++ ++            R            +Q
Sbjct: 812 -------------DGYTSTVFGRRRYLPELDSSN---RNVREAAERAALNAP------IQ 849

Query: 604 AVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPS 656
             + DI+   M++  +A         ++L VHDE++ E  D +      L    M S   
Sbjct: 850 GSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMGSA-- 907

Query: 657 WAKGLPLKAEGYESKRY 673
           +A  +PL+      + +
Sbjct: 908 YALDVPLEVSVGYGRSW 924


>gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702]
          Length = 901

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/643 (13%), Positives = 169/643 (26%), Gaps = 146/643 (22%)

Query: 45  WDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARS 102
            D        +  L+  L +       H++  E   L       + +      T + A  
Sbjct: 386 IDLTDQDPADEATLRAWLADRGAPKWVHDAKAEWHKLN---GSGLVLAGVEQDTALAAYL 442

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                    + +              +        T +           E          
Sbjct: 443 LRPDLRTGDLADV-------------VQRHVGHEITADAPGAVCAQATAELVAALTPELA 489

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
               +   +          E  L  +   +   G  VD A    L+    V+      E 
Sbjct: 490 EIGAMELYL--------DLEVPLATVLAKMEATGISVDAASLRDLSDEYGVQIEAEIAEA 541

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ-VFN 278
            ++      +    ++L+  LF    L     T+   +T    L       P        
Sbjct: 542 RTIAGDDTLNLSSPKQLQKVLFETLELPKTKKTKTGYSTAAGELEKLAASHPHPFLGHLM 601

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                 +     ++ L+EA+  DGR+  T    GA+ TGR S      QN+P  + +   
Sbjct: 602 AHREYQKMKST-IDGLIEAVADDGRIHTTFNQRGAA-TGRLSSSDPNLQNIPVRTEAGRR 659

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQW 397
                                    +R       G   L+ AD + IE RV+A ++ +  
Sbjct: 660 -------------------------IRGAFRVGTGYATLITADYSQIEMRVMAHLSQDPG 694

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++A+  GEDL+    ++ F+V    VT + R   K M   L                GL
Sbjct: 695 LIEAYRAGEDLHNYVGSKVFDVPVEHVTPELRRRVKAMSYGLV--------------YGL 740

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    +                                        +++   + ++   V
Sbjct: 741 SAFGLSQQ------------------------------LRISAGEAKQIMDNYFERFGGV 770

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
               +E+    ++T                                 GR     ++ ++ 
Sbjct: 771 KRYLDEVVAHAKET--------------------------GYTETLYGRRRYLPELNSSN 804

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
                   +               +Q  + DI+   M+              ++L VHDE
Sbjct: 805 RVAAEAAGRA---------ALNAPIQGTAADIIKRAMLRVDAEFTRRDLASRVLLQVHDE 855

Query: 632 IVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +V E  D ++     +L   M         +PL         +
Sbjct: 856 LVVEVVDGEQDVVTEILREQMDGAAD--LRVPLDVSTGVGSDW 896


>gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36]
 gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains,
           putative [Streptococcus sanguinis SK36]
          Length = 880

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 99/669 (14%), Positives = 187/669 (27%), Gaps = 155/669 (23%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++             + D            ++ Q L +               ++   
Sbjct: 326 FEILGDNYHKEEVVGLAWGDSRQIYV--GSSDLLQQPLFQEFLTKTALKT-----YDIKR 378

Query: 79  --VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIA 131
             VL + + +++P        +          + L  +        L +     GK    
Sbjct: 379 AKVLLSHYGIELPAAA-FDARLAKYLLSTVEDNELVTIARLYGQTILPTDDEVYGKGAKR 437

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              + E       R      E      E              +L+ L   EQ L ++   
Sbjct: 438 ALPEQEQLFKHLARKIQVLLETEEPMQEQ--------LRAHDQLDLLLEMEQPLAFVLAK 489

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  V+      +    +     L QE+  L      +    ++L T LF + GL L
Sbjct: 490 MEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPL 548

Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+   +T   VL     + P   ++   R   S+     +  L EA+ +DG++  
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHT 607

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  ++TGR S      QN+P                                 +R 
Sbjct: 608 RYVQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 641

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQV 424
             +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     V
Sbjct: 642 AFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDV 701

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T + R   K +                    G++    A+                    
Sbjct: 702 TPNDRRNAKAVNF--------------GVVYGISDFGLAN-------------------- 727

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                            A +   + + ++   +      + +                  
Sbjct: 728 ----------NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD-------------- 763

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          +     R     D+ +             R            +Q 
Sbjct: 764 ------------KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQG 802

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSW 657
            + DIL   M+N  +A         ++L VHDEIV E P+ +      ++   M +    
Sbjct: 803 SAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKETMETAIEL 862

Query: 658 AKGLPLKAE 666
           A  +PL A+
Sbjct: 863 A--VPLVAD 869


>gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 928

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 98/663 (14%), Positives = 181/663 (27%), Gaps = 132/663 (19%)

Query: 28  VCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
             V   A           D    DP   + L + L +       H        L A    
Sbjct: 376 GRVDALAISVPSGDAVFVDPTALDPADTEALADFLADPRRPKAVHEYKGALLALGAH-GW 434

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVG----EALKLSSQKMEEGKELIARFCKGETHECL 142
           ++       T + A           +     + L    ++   G +L      GE     
Sbjct: 435 EL-GGVVSDTALAAYLVQPGQRRFDLADLCRKYLGRELEEDSSGDQL-TLDLGGEDGAGS 492

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
             ++                G ++   +       L   E  L  +   +   G   D  
Sbjct: 493 GRQHLLAV---RASATRDLAGVLSAELDKRGGTHLLHEVELPLVDVLARLERAGIAADRP 549

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TC 259
               L            +    +      +    ++L+  LF + GL      +T   T 
Sbjct: 550 YLEELQGEFAAAGRVAVERAHEIVG-REFNLGSPKQLQQVLFEDLGLPRTKKIKTGYTTD 608

Query: 260 QRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              L+     T  +   V  +    ++     +  L++ +  DGR+  T     A+ TGR
Sbjct: 609 ADALAWLASQTDNELPAVLLHHRDQTKLRTT-VEGLIKTVADDGRIHTTFNQTVAA-TGR 666

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LV 377
            S      QN+P  +                              +R   +  EG + L+
Sbjct: 667 LSSTDPNLQNIPVRTDVGRR-------------------------IRRAFVVGEGYEELL 701

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++GEQ  + AF +G D +    A+ F+V   QV  + R+  K M  
Sbjct: 702 TADYSQIELRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEVEQVDGEARSRIKAMSY 761

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            L                GL+    +                                  
Sbjct: 762 GL--------------AYGLSAYGLSQQ------------------------------LG 777

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +R+ + +  +   V +  N + +   +                           
Sbjct: 778 ITPEESKRLMEDYFAEFGGVRDYLNAMVEEARR--------------------------V 811

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR     D+ ++            R            +Q  + DI+   M+  
Sbjct: 812 GYTETILGRRRYLPDLTSDN---RQRREMAERMALNAP------IQGSAADIIKVAMLRV 862

Query: 618 TKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670
             A         ++L VHDE+V E    +      +    M+S   +   +PL       
Sbjct: 863 DAALTEGGLTSRVLLQVHDELVVEVAPGERAEVENIVAREMSSA--YDLRVPLAVSVGSG 920

Query: 671 KRY 673
           + +
Sbjct: 921 QNW 923


>gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46]
 gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46]
          Length = 881

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 95/639 (14%), Positives = 183/639 (28%), Gaps = 150/639 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
             L+E L   D   + H+S     VL    + ++ +     T + A          +L  
Sbjct: 368 DALREWLA-GDHPKLVHDSKSAMHVLWNY-DFEL-VGVIHDTFLAAYLLRPSQRSYSLDN 424

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH---REAWRLFGEYCK-GDVTV 167
           V +      Q + +    +                              G Y    D+ V
Sbjct: 425 VVQRH--LGQTLSQADGQMTLLDGPAEDASHVAAVIDLAERLAVELDEAGLYSVYADLEV 482

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                               +   +   G  VDV     L +         +    +L  
Sbjct: 483 PLA----------------PVLGRMERAGIAVDVDALEELRKQAQAATDDAESAARNLVD 526

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK--LTPQAIQVFNNRMR 282
               +    ++L+  LF + G+     T+   +T  + +    K    P    +   R  
Sbjct: 527 KPELNLGSPKQLQEVLFDQLGMPKTKKTKTGYSTAAKEIEGLAKVNPHPFLDYLLKFR-E 585

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           + +     +  L++A+  DGR+  T     A+ TGR S      QN+P  +         
Sbjct: 586 SQKMKST-VEGLIKAVADDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRTEFGRR---- 639

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKA 401
                                +R   +  EG  +L+ AD + IE RV+A ++ +   ++A
Sbjct: 640 ---------------------IREAFVVGEGYAQLITADYSQIEMRVMAHLSQDPGLIEA 678

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           +  GEDL+    ++ F V   +VT + R   K M   L                GL+   
Sbjct: 679 YRQGEDLHNYVGSKVFGVGIDEVTPELRRRVKAMSYGL--------------AYGLSAFG 724

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  +                                     +++ + + ++   V +  
Sbjct: 725 LAQQLDI------------------------------PQREAKKLMEDYFERFGGVRDYL 754

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           +++ +   +                          +        R     ++  +     
Sbjct: 755 HKVVEQARK--------------------------DGFTATMFDRRRYLPELNADN---R 785

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
                  R          + +Q  + DI+   M+    A         ++L VHDE+V E
Sbjct: 786 IARDNAERAA------LNSPIQGSAADIIKIAMLRVDDALRRGGLRSRVLLQVHDELVVE 839

Query: 636 TPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
             D +E      L+  M S       +PL         +
Sbjct: 840 VADGEEAAIKELLHREMDSAAELL--VPLDVSIGAGVNW 876


>gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1]
          Length = 1015

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 111/659 (16%), Positives = 186/659 (28%), Gaps = 157/659 (23%)

Query: 31   ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--DI 88
            + FA       V+       P   Q L   L +         +  +   L     +  DI
Sbjct: 496  VAFAVAVAGCEVQY----SGP--VQGLARHLASAKRI-----ATPDVKALLRSHAIWRDI 544

Query: 89   PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            P  RW    + A                         G  L               +   
Sbjct: 545  PGDRWFDLGLAAYLLDPEE------RDYGWPRLAARWGDMLDRSTDNPGLLALEMAQGM- 597

Query: 149  NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                     G      +              + E  L  +   + + G  VD        
Sbjct: 598  --------AGRLAGASLDTLMR---------TLELPLVPVLADMEEAGIAVDRTAFAAFL 640

Query: 209  QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLS 264
              V  E  ++ QE+     G   + R  ++L   LF   GL     T     TT Q  L 
Sbjct: 641  DEVQHELDRITQEVYKAAGGQ-FNIRSAQQLGELLFGTLGLPTVGKTRGGQATTSQDALE 699

Query: 265  SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                  P    + + R +  +     L  L + +++ GR+  T   L A+ TGR S    
Sbjct: 700  KLSGRHPVVDLILDFR-KLEKLRSTYLEPLPKLVDAAGRIHSTFNQL-ATATGRLSSSNP 757

Query: 325  PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
              QN+P                                 +RSC  A+EG  LV AD + I
Sbjct: 758  NLQNIPARGDLGRR-------------------------MRSCFTAAEGNLLVSADYSQI 792

Query: 385  EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
            E RVLA M+ +   L AF  G D++  T    ++ AP  VT DQR   K +         
Sbjct: 793  ELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTINF------- 845

Query: 445  AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                       G+                                 +   E        +
Sbjct: 846  -------GLIYGMGPQ------------------------------KLGQELRITVNEAK 868

Query: 505  RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
            +  + +  +   +   ++ +  A  +                             +   +
Sbjct: 869  QFIERYFSRLQHLRNFYDNVEAAARE--------------------------QGHVTTLA 902

Query: 565  GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----- 619
            GR  +  ++ +  +       Q  R+          ++Q  + DI+   M+ A       
Sbjct: 903  GRRRLLPEMHSENT---QLRSQARRQAI------NTLIQGSAADIIKLAMLAAHDDPVLH 953

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS--WAKGLPLKAEGYESKRYR 674
                 ++L VHDE++ E P+ +   A   L  LM+          +PL  +    K + 
Sbjct: 954  GLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDWGAGKDWG 1012


>gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 920

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 88/603 (14%), Positives = 163/603 (27%), Gaps = 135/603 (22%)

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYD 144
                    V                +    L L+                 +       
Sbjct: 431 DTAPVYDGGVAGYLLNPLKDTYGYDDLARDYLGLTVPS--------RADLLAKADLGDAL 482

Query: 145 RNKPNHREAWRLFGEYC--KGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVD 200
            N+         +  Y   K    +TR++         KE E+  +     +   G  V+
Sbjct: 483 WNEDARAVTCACYMAYTVWKAAAPLTRQLKDTGMYALYKEIEMPLIYSLYHMEQEGVKVE 542

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
            A        + V    L+QE+   T     +    ++L   LF +  +     T+   +
Sbjct: 543 RAELEEYGNRLKVRIVDLEQEIYRDTG-KEFNINSPKQLGEILFEDMKMPGGKKTKTGYS 601

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL       P   ++ + R   ++        L   +  DGR+ G       + TG
Sbjct: 602 TAADVLDKLAPDYPVVQKILDYRQ-LTKLNSTYAEGLAAYIGEDGRIHGKFNQ-TITATG 659

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P       E                         +R   +  EG   V
Sbjct: 660 RISSTEPNLQNIPVRMELGRE-------------------------IRKVFVPKEGCVFV 694

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA M+G++  ++A+ + +D++  T +  F+V   +VT  QR   K +  
Sbjct: 695 DADYSQIELRILAHMSGDERLIEAYRSAQDIHAITASEVFHVPLGEVTPLQRRNAKAVNF 754

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++                                  + +  
Sbjct: 755 --------------GIVYGIS------------------------------AFGLSEDLS 770

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                       + + +  V    + L     Q  E G                      
Sbjct: 771 ISRKEAVEYINKYFETYPGVKIFLDGL---VSQGKEQGYVTTLY---------------- 811

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR     ++ +             R            +Q  + DI+   M+  
Sbjct: 812 -------GRRRPIPELKSANFMQRQF---GERVAMNSP------IQGSAADIMKIAMIAV 855

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYES 670
            +          IVL +HDE++ ET + +      +    M         + L+ E    
Sbjct: 856 DRELRARNLKSRIVLQIHDELLIETAEDEIGTVKEILVDKMKHAAE--LKVSLEVEAEVG 913

Query: 671 KRY 673
           + +
Sbjct: 914 RSW 916


>gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
 gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469]
          Length = 880

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/658 (13%), Positives = 184/658 (27%), Gaps = 138/658 (20%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           + G     E   +   A   D+  V        + +  + +   + L+   +     +  
Sbjct: 321 EIGFSLLTEQGELFGLALAPDEEHVYFIKKEGFLTEGYLTEKCLQLLQEGRMAYTI-DLK 379

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
            +   L+    +     +     + A                       ++   L+ +  
Sbjct: 380 EQLAFLR--AGIS-DRAKIADAAIGAYLLNPLKGQYPC-------EDIAKDYASLMIKGR 429

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-----EIFKRLEPLSSKEQELWYL- 188
                +    +      E    +  Y              ++ +       ++ E+  + 
Sbjct: 430 AELFGKAPLAKVMEEQPEELAQYACYLAYTAKAAMPVILQKLRENQMLELFRDMEMPLVY 489

Query: 189 -DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
               + + G  V+        + + V   +L+QE+         +    ++L   LF + 
Sbjct: 490 TLYDMQEVGIRVNAQELKAYGEELYVRIVELEQEIYRDAG-EEFNINSPKQLGVILFEKL 548

Query: 248 GLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            L     T++   T   VL           ++   R   ++      + L   + +DGR+
Sbjct: 549 KLPGAKKTKSGFSTAADVLEKLAPDYAIVAKILEYRQ-LAKLKSTYADGLAGFIAADGRI 607

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
            GT      + TGR S      QN+P  +                              +
Sbjct: 608 HGTFNQ-TITATGRISSTDPNLQNIPVRTELGR-------------------------LL 641

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   IA EG  L+ AD + IE RVLA M+G++  + AF    D++  T ++ F++   +V
Sbjct: 642 RKVFIAKEGYVLIDADYSQIELRVLAAMSGDETLIAAFRDNADIHRLTASQVFHIPFDEV 701

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T  QR   K +                    G++    +  +                  
Sbjct: 702 TPLQRRNAKAVNF--------------GIVYGISAFGLSEDLHI---------------- 731

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                    + Q + +V +    L  A ++  E G A       
Sbjct: 732 --------------SVKEAGEYIDKYFQTYPKVKDF---LDNAVKEAKEKGYAETL---- 770

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                R     ++ +      +      R            +Q 
Sbjct: 771 -------------------FHRRRPVPELKSGNFMQRSF---GERVAMNSP------IQG 802

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNP 655
            + DI+   M+   +          ++L +HDE++ E   ++       L   M +  
Sbjct: 803 TAADIIKIAMIRVNERLRAEQFQSRLILQIHDELLIEAEPSEVEAVKELLAQEMVNAV 860


>gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 908

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 101/680 (14%), Positives = 181/680 (26%), Gaps = 156/680 (22%)

Query: 29  CVILFA----FGFDDHPV-------------ELWDCVHDPVMPQVLKEALENTDVTIVAH 71
            ++  A    +      V                    D          L +     V H
Sbjct: 345 EILGVATVDTWALGAGSVAEIALAAAGGAAAWFDPTALDEADETAWAAWLADPARPKVFH 404

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELI 130
           N+     V        +       T + A        +       L+           L 
Sbjct: 405 NAKSAMRVFAEH-GWTVEGVGM-DTALAAYLVKPGRRSFDLDALTLEY----------LG 452

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGE-YCKGDVTVTR--EIFKRLEPLS--SKEQEL 185
                  T +           EA  L  +     D+       + +          E   
Sbjct: 453 RELAPAATADGQLAFGADEGAEADALMVQARAILDLGAAFGERLEEVGAAGLLRDVELPT 512

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             L   +   G   D      + Q+      +  +E  +       +    ++L+  LF 
Sbjct: 513 SALLARMERHGIAADRPHLEAMEQMFAGAVQQAVKEAHAAAGH-EFNLGSPKQLQEVLFG 571

Query: 246 ETGLHLEDLTET---TCQRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
           E GL     T+T   T    L+     T  +   +       ++  V  +  L++ + +D
Sbjct: 572 ELGLPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAAD 630

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  +     A+ TGR S      QN+P  +                            
Sbjct: 631 GRIHTSFSQTVAA-TGRLSSTDPNLQNVPVRTDEGRA----------------------- 666

Query: 362 DCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T  A+ F V 
Sbjct: 667 --IRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAAQVFGVE 724

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            + V  + R   K M   L                GL+    +  +   +          
Sbjct: 725 QSAVDAEMRRKIKAMSYGL--------------AYGLSAFGLSQQLNIEAG--------- 761

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                                    +  A+ ++   V +    +     +T         
Sbjct: 762 ---------------------EARALIDAYFERFGGVRDYLRRVVDEARET--------- 791

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                   GR     D+ ++            R           
Sbjct: 792 -----------------GYTATLFGRRRYLPDLNSDN---RQRREAAERMALNAP----- 826

Query: 601 IVQAVSRDILAEGMMNA----TKAG--YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653
            +Q  + DI+   M+N      +AG    ++L VHDEIV E    +      L    M  
Sbjct: 827 -IQGTAADIVKIAMLNVGRALDEAGLASRMLLQVHDEIVLEIAPGERDRTEQLLRHEMAD 885

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                   PL         +
Sbjct: 886 AVH--LRAPLDVSVGHGPDW 903


>gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 885

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/654 (13%), Positives = 185/654 (28%), Gaps = 141/654 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A    D  V+     ++ +    LK+ +E+  V  + ++   +  +L     +DI  + 
Sbjct: 342 LAVKVKDSEVKFI--SYEEIDFDFLKKIMEDEKVEKLGYSLKEDIIILM-DLGIDIKNYS 398

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                +         +         ++   M   K     +   E       + K     
Sbjct: 399 -HDVEIAEYLLNSTQS------DYDINKISMAYFK---NGYLDLEDLLGKGAKKKTYADL 448

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVA 202
                 +Y    +     +    +               E  L  +  ++   G   D A
Sbjct: 449 DKDDLFKYFAFVLNTIYRLEDLQKEKIDEEEMTSLYQDMELPLVEVLASMEYVGINTDEA 508

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
           +   +++ +  +   L++E+         +    ++L   LF +    +   T+   +T 
Sbjct: 509 VLDEIDKQIIEKLKTLEEEIYDEAG-EKFNINSPKQLGVILFDKMDFPVIKKTKTGYSTS 567

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +       ++ + R + S+     ++ L   +N   +   +      + TGR 
Sbjct: 568 ADVLEKLRGKGEIIDKILDYR-KFSKLKSTYIDGLKAVINKKTKRIHSRFMQTVTATGRI 626

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  +                              +R   +ASEG  LV A
Sbjct: 627 SSTDPNLQNIPIKTEEGR-------------------------LIRKAFLASEGGVLVDA 661

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA ++ ++  L AF+ G D++  T +  F+V   +V   QR   K +    
Sbjct: 662 DYSQIELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYDEVDDRQRYEAKAVNF-- 719

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G++    +                                    
Sbjct: 720 ------------GIVYGISDYGLSQ------------------------------NLNIP 737

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
             A +     +      + +   E  +                            K+   
Sbjct: 738 RKAAKEYIDNYLGHFVGIKDYMAEEIK--------------------------NGKDKGY 771

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +     R     ++               R            +Q  + DI+   M+    
Sbjct: 772 VETIFKRRRYIPELNAKNF---NIRSFGERIA------LNTPIQGSAADIIKIAMVKVYN 822

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
                     +++ +HDE+V +T + +      L   LM ++      + L  +
Sbjct: 823 ELKKRNLKSKLIIQIHDELVVDTAEDEIEEVKELMKDLMENSVD--LNVKLSVD 874


>gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
 gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66]
          Length = 880

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 101/670 (15%), Positives = 189/670 (28%), Gaps = 157/670 (23%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERT 78
             ++             + D             + Q      ++  +T +A     ++  
Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYV---GTSDLLQQ--PLFQD-FLTKIA--LKTYDLK 377

Query: 79  ---VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELI 130
              VL + + +++P+       +          + L  +        L +     GK   
Sbjct: 378 RTKVLLSHYGIELPVAS-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAK 436

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
               + E       R      E      E              +L+ L   EQ L ++  
Sbjct: 437 RALPEKEQLFEHLARKVQILLETEEPMQEQ--------LRAHNQLDLLLEMEQPLAFVLA 488

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  V+      +    +     L QE+  L      +    ++L T LF + GL 
Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLP 547

Query: 251 L--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           L     T+   +T   VL     + P   ++   R   S+     +  L EA+ +DG++ 
Sbjct: 548 LEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIH 606

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
                   ++TGR S      QN+P                                 +R
Sbjct: 607 TRYVQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIR 640

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQ 423
              +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     
Sbjct: 641 KAFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAED 700

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + R   K +                    G++    A+                   
Sbjct: 701 VTPNDRRNAKAVNF--------------GVVYGISDFGLAN------------------- 727

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                             A +   + + ++   +      + +                 
Sbjct: 728 -----------NLGISRKAAKDYIETYFERFPGIKNYMETIVREARD------------- 763

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                           +     R     D+ +             R            +Q
Sbjct: 764 -------------KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQ 801

Query: 604 AVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPS 656
             + DIL   M+N  +A         ++L VHDEIV E P  +      L    M +   
Sbjct: 802 GSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAAIK 861

Query: 657 WAKGLPLKAE 666
            A  +PL A+
Sbjct: 862 LA--VPLVAD 869


>gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603]
 gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603]
          Length = 838

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 99/656 (15%), Positives = 188/656 (28%), Gaps = 119/656 (18%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
               +  F     +     +      +     KE L N ++     ++      LK    
Sbjct: 290 HKADIQGFG--IQNENGCYFIPADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KG 346

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +DI        L+ A         K      K   ++    K     + KG         
Sbjct: 347 VDIQGID-FDLLIAAYLLDPADTDKDFRAVAK--MKETHAVKSDEEVYGKGAKRAVPEQE 403

Query: 146 NKPNHREAWRLFGEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               H  A ++   Y  K       E  ++ E  +  E  L  +   +  +G  VD    
Sbjct: 404 VVAEH-VARKVHVLYDVKQIFEEELEKNEQYELFTELELPLARVLADMEVKGVTVDTERL 462

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             + + +     +++QE+  L      +    ++L   LF    L +   T+   +T   
Sbjct: 463 RNMGEELAGRLKEMEQEIYELAGT-EFNINSPKQLGVILFENLNLPVLKKTKTGYSTSAD 521

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL           ++ + R    +     +  L++ ++ D     T      ++TGR S 
Sbjct: 522 VLDKLMDHHAIIPKILHYRQ-LGKLNSTYIEGLLKVVHDDSSKIHTRFNQVLTQTGRLSS 580

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVAD 380
                QN+P       +                         +R   I   EG  +  AD
Sbjct: 581 TEPNLQNIPIRLEEGRK-------------------------IRQAFIPSEEGWIMYAAD 615

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA +A ++  ++AF+   D++  T    F V   +VT + R   K +   + 
Sbjct: 616 YSQIELRVLAHIAKDEGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV 675

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A         E +   + +   + ++  +         
Sbjct: 676 YGIS-----DYGLSQNLGITRKAAGEFIERYLESFPGVQEYMADIVKDAKQKGYVSTL-- 728

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    +RR +P +  +        
Sbjct: 729 ---------------------------------------LNRRRYIPEITSRNFNLRSF- 748

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          K    I+     D          + 
Sbjct: 749 --------------AERTAMNTPIQG---SAADIIKKAMIIM----AD-------RLEEE 780

Query: 621 G--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           G    ++L VHDE++ E P  +      L   +M      A  +PLK +      +
Sbjct: 781 GLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 834


>gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
 gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100]
          Length = 880

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 98/655 (14%), Positives = 187/655 (28%), Gaps = 139/655 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQKFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +++P        +             +    +L  Q +    + +  + KG         
Sbjct: 388 IELPAAS-FDARLAKYLL-STVEDNELATIARLYGQTILLTDDEV--YGKGAKRALPEQE 443

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H           +  +        +L+ L   EQ L ++   +   G  V+     
Sbjct: 444 QLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQ 503

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQ 260
            +    +     L QE+  L      +    ++L T LF + GL L     T+   +T  
Sbjct: 504 GMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAV 562

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL     + P   ++   R   S+     +  L EA+ SDG++         ++TGR S
Sbjct: 563 DVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIASDGKIHTRYVQD-LTQTGRLS 620

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379
                 QN+P                                 +R   +       L+ +
Sbjct: 621 SVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADSVLLSS 655

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438
           D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K +   
Sbjct: 656 DYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNF- 714

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    A+                                  
Sbjct: 715 -------------GVVYGISDFGLAN------------------------------NLGI 731

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
              A +   + + ++   +      + +                                
Sbjct: 732 SRKAAKDYIQTYFERFPGIKNYMETIVREARD--------------------------KG 765

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            +     R     D+ +             R            +Q  + DIL   M+N  
Sbjct: 766 YVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVAMINLD 816

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 817 RALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 849

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 88/669 (13%), Positives = 182/669 (27%), Gaps = 152/669 (22%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77
           K  I  + E+  +   +  +++  +   D          +  AL +  +  + H+     
Sbjct: 315 KVAIHCHFENNVLSKISLSYNEDNIFYIDQNRSQDALITINSALFSNGILKIIHD----- 369

Query: 78  TVLKACFNLDIP-----IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
                     IP     +      ++++ S               + +       E +  
Sbjct: 370 ---TRETRKTIPTIEKVLGSVDDLMIMSYSLD-TGKHD-----HSIPNIIAHNLSENVET 420

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
           F                     +LF  Y + D                  + L  +   +
Sbjct: 421 FSAKTLIAIHEK--LKQRLFKEKLFTIYERFD------------------KPLMKVIFNM 460

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  +++     L+         L+ ++ +L      +    ++L   LF + GL+ +
Sbjct: 461 EKNGILLNIHKLQELSDKFQQLIAVLENDIYNLAG-EKFNIASPKQLSDVLFNKMGLNKK 519

Query: 253 DLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              ++    T   VL   +    +      +    S+      + L++ ++       T 
Sbjct: 520 KKLKSGSYSTNSVVLEELEIEGVEIASKILDWRHLSKLKSTYTDALIKQVDPLDGRIHTN 579

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P  S+                             +R   
Sbjct: 580 FSTTVTATGRLSSSSPNLQNIPIRSKEGN-------------------------LIRQTF 614

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           IA +G K++ AD + IE R+LA +A      +AF  G+D++  T  + F V       +Q
Sbjct: 615 IAPKGYKIISADYSQIELRLLAHVANVTAFKEAFANGKDIHGITAGQVFGVQKDMEVDEQ 674

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
                                      G++    A                         
Sbjct: 675 LRR-------------KAKSINFGIMYGISQFGLAKR----------------------- 698

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                                +   +  +     ++     Q                  
Sbjct: 699 -------LGITIEEAAEYINYYFSCYPEIKVYMEKVVSTARQ------------------ 733

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                   +  +    GR    +D+ N   YL        R             Q  + D
Sbjct: 734 --------HGYVETLFGRRCFVKDINNTIPYLRQF---AERAAINAPL------QGTAAD 776

Query: 609 ILAEGMMNA-TKAGY-DIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           I+   M+    +     I+L VHDE++ E   +  +  A ++  +M +       +PL+ 
Sbjct: 777 IIKCAMIQLFDQLKAGKIILQVHDELLVEVENEKVQETAKLMKDVMENIVK--ISIPLEV 834

Query: 666 EGYESKRYR 674
           E   S  + 
Sbjct: 835 EVKISDNWG 843


>gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
 gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4]
          Length = 1015

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 111/659 (16%), Positives = 184/659 (27%), Gaps = 157/659 (23%)

Query: 31   ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA--CFNLDI 88
            + FA       V+       P   Q L   L +         +  +   L        DI
Sbjct: 496  VAFAVAVAGCEVQY----SGP--VQGLARHLASAKRI-----ATPDVKALLRSHALWRDI 544

Query: 89   PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            P  RW    + A                         G  L               +   
Sbjct: 545  PGDRWFDLGLAAYLLDPEE------RDYGWPRLAARWGDMLDRSTDNPGLLALEMAQGM- 597

Query: 149  NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                     G      +              + E  L  +   + + G  VD        
Sbjct: 598  --------AGRLAGASLDTLMR---------TLELPLVPVLADMEEAGIAVDRTAFAAFL 640

Query: 209  QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLS 264
              V  E  ++ QE+     G   + R  ++L   LF   GL     T     TT Q  L 
Sbjct: 641  DEVQHELDRITQEVYKAAGGQ-FNIRSAQQLGELLFGTLGLPTVGKTRGGQATTSQDALE 699

Query: 265  SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                  P    + + R +  +     L  L + ++  GR+  T   L A+ TGR S    
Sbjct: 700  KLSGRHPVVDLILDFR-KLEKLRSTYLEPLPKLVDDAGRIHSTFNQL-ATATGRLSSSNP 757

Query: 325  PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
              QN+P                                 +RSC  A+EG  LV AD + I
Sbjct: 758  NLQNIPARGDLGRR-------------------------MRSCFTAAEGNLLVSADYSQI 792

Query: 385  EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
            E RVLA M+ +   L AF  G D++  T    ++ AP  VT DQR   K +         
Sbjct: 793  ELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTINF------- 845

Query: 445  AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                       G+                                 +   E        +
Sbjct: 846  -------GLIYGMGPQ------------------------------KLGQELRITVNEAK 868

Query: 505  RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
            +  + +  +   +   ++ +  A  +                             +   +
Sbjct: 869  QFIERYFSRLQHLRNFYDNVEAAARE--------------------------QGHVTTLA 902

Query: 565  GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----- 619
            GR  +  ++ +  +       Q  R+          ++Q  + DI+   M+ A       
Sbjct: 903  GRRRLLPEMHSENT---QLRSQARRQAI------NTLIQGSAADIIKLAMLAAHDDPVLH 953

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS--WAKGLPLKAEGYESKRYR 674
                 ++L VHDE++ E P+ +   A   L  LM+          +PL  +    K + 
Sbjct: 954  GLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDWGAGKDWG 1012


>gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
 gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991]
          Length = 861

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 89/661 (13%), Positives = 186/661 (28%), Gaps = 140/661 (21%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
           D  +  FA    ++  E            +L+    +     + +++             
Sbjct: 323 DATLYGFAIAHGNN-CEYISLEDAKNDTALLEYIHTDNG--KIVYDAKNVYHAWHRNHIA 379

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +P+HR    ++ A       +             K+ E K         E       + 
Sbjct: 380 FVPVHR--DVMLEAFLLDGMIS----------DYDKLAE-KYAFDCTLSKEDVFGKKGKP 426

Query: 147 KPNHREAWRLFGEYCKGD-VTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCV 199
           K    E    +   C  +   + +++F  LE         + E  +  +   +   G   
Sbjct: 427 KLVVEEDAAAYAMQCAENLANIEQQLFDELEQKDMKELYDTIEMPVVEVLYAMEKEGVHT 486

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
            V     + +    +   L+ ++         +    ++L   L+ E GL       +T 
Sbjct: 487 SVETLQEIAEATGKKIEALNAQIYEYAGM-EFNINSPKQLAVVLYDELGLPCGKKR-STG 544

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   K + P    +   R +  +        L + +  DG++      +  ++TGR 
Sbjct: 545 ADVLEKLKPVHPIISLLLEQR-KYQKIYSTYAVGLSKHILKDGKIHTIFNQIQ-TQTGRL 602

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+       +                          +R   +AS    L+ A
Sbjct: 603 SSSEPNLQNISVRDEEGK-------------------------VIRKAFVASPQHTLMSA 637

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA MA E+  ++AF  G D++  T  + F+V    V  + R   K +    
Sbjct: 638 DYSQIELRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDVDHDHVDSNMRRSAKTVNF-- 695

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G +    +                                    
Sbjct: 696 ------------GIVYGQSDFGLSEQ------------------------------LGIT 713

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +R    +   +  +    ++     E+                          N  
Sbjct: 714 MKEAKRFIDKYFASYPNIKTFMDDTIAFCEE--------------------------NGY 747

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT- 618
           +    GR    +++ +    +    +   R            +Q  + D++   M++   
Sbjct: 748 VKTMFGRRRYIKEINDKNYMMREFGK---RAAMNAP------IQGSAADLIKLAMVHIYQ 798

Query: 619 -----KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKR 672
                K    ++L +HDE++ +  D +      +    M         +PL AE    K 
Sbjct: 799 TMKEKKVKSRMILQIHDELIFDVCDDELDTMKDIVEQGMQQAMQ--LRVPLIAEASFGKT 856

Query: 673 Y 673
           +
Sbjct: 857 W 857


>gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6]
 gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6]
          Length = 885

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 80/684 (11%), Positives = 172/684 (25%), Gaps = 159/684 (23%)

Query: 19  CGICKYAEDVCVILFAFGFDDHPVELWDCV---HDPVMPQVLKEALENTDVTIVAHNSYF 75
            G     ++  +   A  F                  +   L E  E             
Sbjct: 328 AGFDAQKQESYIHGVAVSFSAEDTAYVPMSGFVSGRYLKVSLMELAEAG----------- 376

Query: 76  ERTVLKACFNLDIP------IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
              +        +         +     + A           +       +   +  K++
Sbjct: 377 -LAIWTYGLKEQLRAVPYSRKTKISDVAIAAYLLDP------LASDYPFDTLAAQYVKDV 429

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----------FKRLEPLS 179
           +    +         +              Y                         +   
Sbjct: 430 LILSAEEVLGT---KKEVSWFEVPEETAAMYAGEIAYTALSCGPGLVEKLEAQGMRKLYD 486

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L Y    + + G  V      T  + +     +L+  +         +    ++L
Sbjct: 487 EVEMPLVYTLCHMEEAGIRVLPDELETYGENLKEGIARLETSIYEAAG-EKFNINSPKQL 545

Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L     T+   +T   VL       P    +   R   ++      + L  
Sbjct: 546 GVILFEKMQLPGGKKTKTGYSTAADVLEKLAVDVPFVADILEYRQ-LTKLKSTYADGLAA 604

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            + +DGR+  T +    + TGR S      QN+P                          
Sbjct: 605 CIAADGRIHTTFKQ-TITATGRISSTEPNLQNIPTRIELGR------------------- 644

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R C +  +G   V AD + IE RVLA ++G++  ++A+   ED++  T ++ 
Sbjct: 645 ------QIRKCFVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIHAITASQV 698

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F+V  ++VT   R   K +                    G++                  
Sbjct: 699 FHVPLSEVTPLMRRNAKAVNF--------------GIVYGIS------------------ 726

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                           + +        +    ++ + +  +      L +  ++      
Sbjct: 727 ------------AHGLSEDLNISRKEAQEYIDSYYEAYPGIRGYLESLVETAKK------ 768

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                       GR     ++ +             R       
Sbjct: 769 --------------------KEYSETYYGRRRPMPELSSGNFMQRQF---GERVAKNAP- 804

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YH 649
                +Q  + DI+   M    +          ++L VHDE++ ET + +      +   
Sbjct: 805 -----IQGTAADIIKIAMNRVDQRLQEEGLKSRLLLQVHDELLLETAEDELERVREILRE 859

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
            M      A  +  + + ++ K +
Sbjct: 860 EMIGATDLAVSM--EIDMHDGKNW 881


>gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4]
 gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4]
          Length = 868

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 97/649 (14%), Positives = 180/649 (27%), Gaps = 139/649 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A       V     +  P + +     LE     +  +++    + L A          
Sbjct: 344 LALCLGGEKVF---LLEGPEVLKSFFRLLEEKGGLVSTYDAK---SCLHALEPYGFKPEM 397

Query: 93  W-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                L+ A      +  +    A + +   +  G EL  +         +        +
Sbjct: 398 IGFDVLLAAYLVNPAANNELGAIAFEHAGFMLSPGAELPEKAQAIYQLTPILKSKI---K 454

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
              + +  Y                        L  +   +   G  V      +L++ +
Sbjct: 455 LQEQEYLYYSVE-------------------LPLAAVLADMEKVGVKVSEERLRSLSKEL 495

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268
             +  +L +E+  L      +     +L   LF + GL     T+   +T   VL    +
Sbjct: 496 GEQLAQLSEEIYKLAG-ERFNLNSPRQLGYILFEKLGLKPVKKTKTGYSTDASVLEKLAE 554

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                 +V   R   ++      + L E ++   GRL  T    G + TGR +      Q
Sbjct: 555 -HEIVAKVLVYRQ-LAKLKSTYTDALPELIDPATGRLHTTFLQAG-TATGRLASAEPNLQ 611

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEA 386
           N+P                             +   +R   +A      L+ AD + IE 
Sbjct: 612 NIPVR-------------------------DSLGRRIRQAFVAEGPDYVLLSADYSQIEL 646

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA ++ +    +AF  GED++  T A  F V+P +VT + RA  KV+   + Y     
Sbjct: 647 RVLAHLSEDPGLCEAFVKGEDIHARTAAEIFGVSPQEVTPEMRAKAKVVNFGIVYGMS-- 704

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                  +  L +               +   + F   +     E       +     R 
Sbjct: 705 ---DYGLSQELKIEPGEAHEYIERYFRRYPRVKQFIERVIAQAREKGYVTTILNR--RRY 759

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                  +    +L     +    T   G A    K+  V                    
Sbjct: 760 IPEILSSNRNQRQLG---ERLAINTTIQGSAADLIKKAMV-------------------- 796

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
                D+                             Q          M+          L
Sbjct: 797 -----DIHRQLKG-----------------------QG-----FKCRMI----------L 813

Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            VHDE++ E P  +    + ++   M     +   +P+KA       ++
Sbjct: 814 QVHDELLFEVPKEELEKVAPIIKSTMEQALPF--KVPIKANLKVGPNWQ 860


>gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
 gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941]
          Length = 843

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 94/601 (15%), Positives = 174/601 (28%), Gaps = 138/601 (22%)

Query: 85  NLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
            + +       T +             L A+     +S  +      ++    +      
Sbjct: 362 GVGVRGAH-FDTYLAGYLAKPGLGSYDLDALATERGISDVEASHADPVVREAARRAALVR 420

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
                                                   E  L  +   +   G  VD 
Sbjct: 421 ALAPRL------------------DAELREMGLSRLYYEVELPLADVLAEMERVGMPVDA 462

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL---EDLTETT 258
                + + ++    +L++ +         +    ++L   LF E GL          +T
Sbjct: 463 RTLEEVGREIERRIAELEEAIFEDVGHP-FNIGSPKQLSEVLFEELGLPPVRRTKTGYST 521

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
             +VL       P A ++       ++     +  L++ +  DGR+  T      + TGR
Sbjct: 522 DAKVLQQLALEHPIAERII-AWRELAKLKGTYVEGLLKLVGEDGRIHTT-LNQTTTATGR 579

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
            S      QN+P  + +                            +R    AS G+ LVV
Sbjct: 580 ISSDSPNLQNIPVRTETGMR-------------------------IRDAFTASPGRLLVV 614

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA M+ E   ++AF+ GED++  T A  F+V P  VT + R   K++   
Sbjct: 615 ADYSQIELRILAHMSREPALVEAFKNGEDIHTRTAAEVFDVRPESVTPELRRRAKMVNFG 674

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y                                                         
Sbjct: 675 ILYGISGYGLAT-------------------------------------------RLGNV 691

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +R  + + ++H RV+E    + ++  +  E G A                     
Sbjct: 692 HPAEADRYIQRYFERHPRVTEF---IRKSLAEAEELGYATTL------------------ 730

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                 GR     ++ N         +   R            VQ  + DI+   M++  
Sbjct: 731 -----FGRRRYVPELRNKN---KNVRKLGERIAFNAR------VQGSAADIIKVAMVDLA 776

Query: 619 KA----GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
                 G D+++ VHDE+V +         + L    M +   +    PL+ E    +R+
Sbjct: 777 PRLGPLGADMLMQVHDELVFDVDRDRVEEVAALAAERMVAA--YDLDPPLEVEVKAGERW 834

Query: 674 R 674
            
Sbjct: 835 G 835


>gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
 gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544]
          Length = 878

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 94/650 (14%), Positives = 177/650 (27%), Gaps = 150/650 (23%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICT 96
           D           D      L   LE+     V          LK      +     +   
Sbjct: 361 DAEKAGFVP--KDSAAFPALLSLLESEKQVAVF--------GLKRYDQAGVRGQNDFFDI 410

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR-FCKGETHECLYDRNKPNHREAWR 155
            + A       +         L     +  +E+    F    +      +          
Sbjct: 411 ELAAYLLEPERS------KYALPELSQKYLQEMAPESFADERSRAVWEAKTIS------- 457

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
               Y      +  E    L         L  +   +   G  V+ A      + V    
Sbjct: 458 --RLYPLLGAKLEEEELTHLMKTVE--LPLVEVLAAMEQNGVYVNRAHLAEKTEEVADRL 513

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
             ++Q +  +      +    ++L T LF E  L +   T+   +T   VL S +   P 
Sbjct: 514 QTIEQSIYEMAGHT-FNLNSPKQLGTVLFEELDLPVRKKTKTGYSTNAEVLESLRLEHPI 572

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             Q+   R+  S+     L+ +   + +D GR+  +      + TGR S      QN+P 
Sbjct: 573 VEQILAYRL-WSKLKSTYLDGITGLIRTDTGRVHTSFNQ-TVTATGRLSSSDPNLQNIPV 630

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLA 390
            +                              +R+     EG   L+ AD + IE R+LA
Sbjct: 631 RTEEGR-------------------------MIRALFEPGEGYDYLLSADYSQIELRLLA 665

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            M+G++  +  F+ G+D++  T A  F +   +VT + R   K +               
Sbjct: 666 HMSGDENFIDVFKRGQDIHARTAAEVFGIPLEEVTPELRRHAKAVNF------------- 712

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G++                                  A                +
Sbjct: 713 -GIVYGISDFGL------------------------------ARNLHISRKEAGDYISRY 741

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            +++  V    +++     +  E G                             GR    
Sbjct: 742 FERYPGVRAFMDKV---VAEAHETGYVTTM-----------------------FGRRREL 775

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDI 624
             + +             R            +Q  + D++   M+ A            I
Sbjct: 776 PAIKSRNF---NQRMLAERMAMNTP------IQGTAADVIKLAMIAAYHRLKEAGVKSRI 826

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
           +L VHDE+V E  +++      +    M      A  +PL  + +  + +
Sbjct: 827 LLQVHDELVLEVVESELDVVQAILRESMEHVV--ALSVPLIIDIHWGRNW 874


>gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
 gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204]
          Length = 876

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 84/659 (12%), Positives = 181/659 (27%), Gaps = 135/659 (20%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
              +  FA  ++         V        L     +        +       L     L
Sbjct: 337 HATINGFAL-YNGKQAVYISLVDAKK-DSDLLAYFSSDMPHKYGFDVKRNLH-LAENEGL 393

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVG---EALKLSSQKMEEGKELIARFCKGETHECLY 143
            +  H     ++ A       +L       E     +      +++  +  K        
Sbjct: 394 TLNFH--DDMMLAASLVDS--SLTTTAKIIERYGFEN--TVSYEDVYGKPTKPNLIIDEE 447

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDV 201
            +       A  +F  Y      +T ++ +        E E+    +   +   G   D+
Sbjct: 448 KQCMYACAFARNIFRLYA----EITPKLQEYKMEKLYYEMEMPLTTVLYHMEREGIRCDI 503

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
            +   +      + ++  +E+  L      +    ++L   LF + GL       +T   
Sbjct: 504 DILDRIATETMAKISEAQKEIYVLAA-KEFNINSPKQLAEVLFDDLGLPTGKKR-STAAG 561

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
            L   +  +P    +   R + S+        L + +  DG++        A++TGR S 
Sbjct: 562 ELEKLQGKSPIIDYILEYR-KLSKIYSTYAEGLKKYIQQDGKIHTIYNQS-ATQTGRLSS 619

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+       +E                         +R   +   G  L+ +D 
Sbjct: 620 SEPNLQNISVRDEQGKE-------------------------IRKAFLPENGCVLISSDY 654

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
             IE R+LA MA E   ++AF+ G D++  T    F+    ++T   R   K +      
Sbjct: 655 HQIELRMLAHMANETSLIEAFKEGIDIHTKTAMDVFHKPQDEITAQDRRSAKTVNF---- 710

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         G++    +  +  +                                
Sbjct: 711 ----------GIVYGISDFGLSEQLGVSRY------------------------------ 730

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                 + +   + ++    +++    +   E G                          
Sbjct: 731 EAHDFIERYYAAYPKIRIYMDQI---VKDCEEKGYVETL--------------------- 766

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--- 618
              GR     ++ +         +   R            +Q  + D++   M++     
Sbjct: 767 --CGRRREIPEIHDKNHATREFGK---RAAMNAP------IQGSAADLIKLAMIHIDQMM 815

Query: 619 ---KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              K    ++L VHDE++   P  +      ++   M +       +PL AE      +
Sbjct: 816 KDAKVKSKMILQVHDELIFNVPKEEVDVMTKLINDGMVNAMH--LQVPLTAECSIGSDW 872


>gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087]
          Length = 880

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 97/662 (14%), Positives = 189/662 (28%), Gaps = 139/662 (20%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +++P        +             +    +L  Q +    + +  + KG         
Sbjct: 388 IELPAAA-FDARLAKYLL-STVEDNELATIARLYGQTILPTDDEV--YGKGAKRALPEQE 443

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H           +  +        +L+ L   EQ L ++   +   G  V+     
Sbjct: 444 QLFEHLARKVQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQ 503

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQ 260
            +    +     L QE+  L      +    ++L T LF + GL L     T+   +T  
Sbjct: 504 GMQAENEKTLESLTQEIYDLAGQK-FNINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAV 562

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL     + P   ++   R   S+     +  L EA+ +DG++         ++TGR S
Sbjct: 563 DVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQTGRLS 620

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379
                 QN+P                                 +R   +       L+ +
Sbjct: 621 SVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADSVLLSS 655

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438
           D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K +   
Sbjct: 656 DYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNF- 714

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    A+                                  
Sbjct: 715 -------------GVVYGISDFGLAN------------------------------NLGI 731

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
              A +   + + ++   +      + +                                
Sbjct: 732 SRKAAKDYIQTYFERFPGIKNYMETIVREARD--------------------------KG 765

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            +     R     D+ +             R            +Q  + DIL   M+N  
Sbjct: 766 YVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVAMINLD 816

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
           +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+    +
Sbjct: 817 RALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVADENTGQ 874

Query: 672 RY 673
            +
Sbjct: 875 TW 876


>gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1]
 gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1]
          Length = 908

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 103/664 (15%), Positives = 197/664 (29%), Gaps = 156/664 (23%)

Query: 39  DHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI--- 94
                  D        +  L   L +  V    H +      L      D+    W    
Sbjct: 367 GGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAK-----LAIH---DLQGRGWTLAG 418

Query: 95  ---CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
               T + A          AL  +              K  +      +    L D +  
Sbjct: 419 VTSDTALAAYLVRPGQRSFALDDLSLRY---------LKRELRADNPEQQQLSLLDDSDG 469

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVA 202
              +A +         V +   + + L  +       + E  +  +   +   G  VD+ 
Sbjct: 470 VDDQAVQTLLLRASAVVDLADALDEELSRIDSSALLGNMELPVQRVLAELETAGIAVDLE 529

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TC 259
           +   L      +     +   ++    + +    ++L+  LF E  +     T+T   T 
Sbjct: 530 MLSGLQSEFADQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELEMPKTKRTKTGYTTD 588

Query: 260 QRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
              L S       P    +  +R  A+R  V  ++ L+ A+ SDGR+  T     A+ TG
Sbjct: 589 ADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNAVASDGRIHTTFNQTIAA-TG 645

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KL 376
           R S      QN+P  + +                            +R   +  +G  +L
Sbjct: 646 RLSSTEPNLQNIPIRTEAGRR-------------------------IRDAFVVGDGYGEL 680

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A ++ ++  ++AF TGEDL+    +R+F+V   +VT + R   K M 
Sbjct: 681 MTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMS 740

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L                GL+    +  +K                             
Sbjct: 741 YGL--------------AYGLSAYGLSQQLKI---------------------------- 758

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +   + +  +   V +   ++     +                          
Sbjct: 759 --STEEAKEQMEQYFARFGGVRDYLRDVVDQARK-------------------------- 790

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
           +       GR     ++ ++            R            +Q  + DI+   M+N
Sbjct: 791 DGYTSTVFGRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIN 841

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
             +A          +L VHDE++ E  D +      L    M S   +A  +PL+     
Sbjct: 842 VDQAIKDAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGSA--YALDVPLEVSVGF 899

Query: 670 SKRY 673
            + +
Sbjct: 900 GRSW 903


>gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126]
 gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126]
          Length = 879

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 100/664 (15%), Positives = 195/664 (29%), Gaps = 145/664 (21%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++           F + +          D +  +  + AL +  V     N  ++   
Sbjct: 325 FEILGDNYHTEPIIGFAWGNDKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377

Query: 79  --VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
             VL +   +D+P        +             +    +L +    E  E++  + KG
Sbjct: 378 SKVLLSHLGIDLPTAN-FDARLAKYLL-STVEDNELSTIARLYTDLPLETDEVV--YGKG 433

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                       +H        +  K  +        + E L   E  L  +   +   G
Sbjct: 434 AKRAVPEKEVLLSHLAKKVKVLQVAKQVMLEKLAEHGQSELLFDMELPLANVLAKMEIAG 493

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDL 254
             V     + +     V   KL QE+  +      +    ++L   LF + GL L     
Sbjct: 494 IKVKGQTLNEMAVENQVVIDKLTQEIYEMAG-EEFNINSPKQLGVILFEKMGLPLEYTKK 552

Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+   +T   VL     + P   ++   R   ++     +  L + +  DG++       
Sbjct: 553 TKTGYSTAVDVLERLAPIAPIVAKILEYRQ-ITKLQSTYVLGLQDYILEDGKIHTRYVQD 611

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             ++TGR S      QN+P                                 +R   + S
Sbjct: 612 -LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPS 645

Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQR 429
            E   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  VT + R
Sbjct: 646 TEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDR 705

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +                    G++    ++                         
Sbjct: 706 RNAKAVNF--------------GIVYGISDFGLSN------------------------- 726

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                         +     + +++  +    + + +  +                    
Sbjct: 727 -----NLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKD------------------- 762

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                     +     R     D+ +             R            +Q  + DI
Sbjct: 763 -------KGYVETLFHRRRELPDINSRNF---NVRNFAERTAINSP------IQGSAADI 806

Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLP 662
           L   M+N  KA         ++L VHDEIV E P+ +      ++   M +    A  +P
Sbjct: 807 LKIAMINLDKALVEGGYKTKMLLQVHDEIVLEVPNDELVAMKALVKETMEAAVELA--VP 864

Query: 663 LKAE 666
           L A+
Sbjct: 865 LIAD 868


>gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 867

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 87/594 (14%), Positives = 176/594 (29%), Gaps = 136/594 (22%)

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
             W    + A               LK S    +  ++ +      E      +R     
Sbjct: 395 GNWQDLSLAAYLLNP----------LKDSYDYDDLSRDYLGLLLPSEKELGDSERPGKYR 444

Query: 151 REAWRLFGEYCKGDVTV-TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
                L G+     +    RE+++        E  L +    + + G  VD     +   
Sbjct: 445 AFLSLLSGKKLLSRLDKKERELYR------EIELPLVFTLHEMEESGILVDREALLSYGA 498

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
            +  +  ++ + +         +    ++L   LF + GL     T+   +T   VL   
Sbjct: 499 ELREKIGEIRERIYREAG-EEFNLNSPQQLGQILFEKLGLPGGRKTKTGYSTAADVLEKL 557

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
            +    A  +   R   S+        L+  +  DGR+ G    +  + TGR S      
Sbjct: 558 SEENQLASDILEYR-TYSKLNSTYAEGLLSWIREDGRIHGHFNQMV-TATGRISSTDPNL 615

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  +                               R   I  EG   + AD + +E 
Sbjct: 616 QNIPIRTEMGRRF-------------------------RRVFIPKEGSIFIDADYSQVEL 650

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA ++G++  ++A++  +D++  T +  F+V  ++VT   R   K +           
Sbjct: 651 RILAALSGDEKLIRAYQNADDIHAVTASEVFHVPLSEVTPQLRRNAKAVNF--------- 701

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  +          +  
Sbjct: 702 -----GIVYGIS------------------------------AFGLSEGLSISRQEAKEY 726

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + + + +  V +  +   +   +                             +    GR
Sbjct: 727 IERYFETYPGVKKFLDGEVELARK--------------------------QGYVRTIFGR 760

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                D+ ++     +      R            +Q  + DI+ + M   ++A      
Sbjct: 761 KRPVPDISSSNFARRSF---GERVAMNSP------IQGSAADIMKKAMNEVSRALKAGAF 811

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
              IVL VHDE++ ETP+ +      L  L M +       +PL A+    + +
Sbjct: 812 RARIVLQVHDELLLETPEKEADQVEELLILSMQNAAK--LRVPLIADAKRGRNW 863


>gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470]
 gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470]
          Length = 858

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 79/508 (15%), Positives = 149/508 (29%), Gaps = 121/508 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   +   G   D      +   + V+  KL   +         +    +
Sbjct: 456 FEKIENPLAAVLAEMEKAGIATDQKRWEAVCHELKVQERKLLSLIYEAAG-EEFNVNSPK 514

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF + G+     T+   +T   VL    K  P    +   R   S+     L  L
Sbjct: 515 QLGVILFEKMGMPAGKKTKNGYSTAADVLEMLAKSYPFVKDILEYR-TISKLISTYLEAL 573

Query: 295 VEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
              +  + GR+  +      + TGR S      QN+P  +                    
Sbjct: 574 PLLIRPETGRIHTSFNQ-TVTATGRLSSSDPNLQNIPVRTAEGR---------------- 616

Query: 354 PDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +RS  +   G    + +D + +E RVLA M+G++  ++AF   ED++  T
Sbjct: 617 ---------QIRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIHRRT 667

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            A    +   +VT +QR+  K +   + Y               L               
Sbjct: 668 AAEVLGIPFEEVTSEQRSHAKAVNFGIIYG-----ISDFGLANQL--------------- 707

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                              K + +++  +      + +  ++  
Sbjct: 708 ------------------------GISRGEAGTYIKKYFERYPYIHAFMKSMVEDAQE-- 741

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                                   +       GR     D+ ++            R   
Sbjct: 742 ------------------------SGRAKTLFGRYRELPDIRSSNF---NRRSFAERTAM 774

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS- 645
                    +Q  + DI+   M+  ++          ++L VHDE+V E    ++ N   
Sbjct: 775 NTP------IQGTAADIMKLAMIEVSRRIKEEGYKSRVLLQVHDELVVEAVSEEKENLKT 828

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +L   M S       +PL A+ +E K +
Sbjct: 829 LLKETMESVVE--LKVPLIADVHEGKNW 854


>gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
 gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641]
          Length = 885

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/596 (13%), Positives = 157/596 (26%), Gaps = 143/596 (23%)

Query: 92  RWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            +    + A       +      + E              L       E  +        
Sbjct: 415 NFFDVTLAAYVLDSSVSRYDFSYLAETY------------LEGALAPVEDDDDRLVMQAA 462

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
             R       +        T+ ++  ++        L  +   +   G  +D      L 
Sbjct: 463 CLRALIDPMSQ--ALVADGTKGVYDTID------LPLVPVLAHMERIGALLDTDTLQALG 514

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSS 265
                    + + +  L      +    +++   LF   GL     T    +T  +VL  
Sbjct: 515 SRTAQNIADISERIYELAG-EKFNIDSPQQVSHILFDVIGLPPRKRTSRGYSTDAKVLED 573

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                     +   R   ++     ++ L +   +DGRL  +      + TGR S     
Sbjct: 574 LSSEHQLPGLILEYR-ELAKIMGTYIDALPKLRGADGRLHTSFNETVTT-TGRLSSSNPN 631

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGI 384
            QN+P  +                              +R C I  S     V AD + I
Sbjct: 632 LQNIPVRTEFGRH-------------------------IRECFIPLSPEHLFVSADYSQI 666

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++G+   + AF +G D +  T AR F V   +VT + R+  K +   +     
Sbjct: 667 ELRLLAHLSGDAHLIDAFRSGADFHSATAARVFGVPVEEVTPELRSRAKAVNFGIV---- 722

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                                                     +     +          +
Sbjct: 723 ----------------------------------------YGQQAFGLSQSLRIPFGEAQ 742

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
            +   +   +  V      L     Q  E G A+                          
Sbjct: 743 AMIDRYFTAYPVVRAY---LDNIVAQAHEKGYALTM-----------------------F 776

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620
           GR     ++  + +          R            +Q  + DI+ + M+         
Sbjct: 777 GRKRHIPELRAHNA---QQRAFGERIAMNHP------MQGTAADIIKKAMVEVDARLRHE 827

Query: 621 --GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                +++ VHDE+    P        ++L  +M +       +PL  +   +K +
Sbjct: 828 FPNAKMMIQVHDELDLSVPADQVGEVSALLKEVMENVVE--LDVPLIVDVQSAKNW 881


>gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72]
          Length = 880

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 188/660 (28%), Gaps = 149/660 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           +++P        +          + L  +        L +     GK       + E   
Sbjct: 388 IELPAAS-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E  +   E              +L+ L   EQ L ++   +   G  V+
Sbjct: 447 EHLARKVQVLLETEKPMQEQ--------LRAHNQLDLLLEMEQPLAFVLAKMEIAGIKVE 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    +     L QE+ +L      +    ++L T LF + GL L     T+  
Sbjct: 499 RETLQGMQAENEKTLESLTQEIYNLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++   R   S+     +  L EA+ +DG++         ++
Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +      
Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433
            L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K
Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A+                             
Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                   A +   + + ++   +      + +                           
Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+N  +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPNGELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
 gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK]
          Length = 908

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 103/664 (15%), Positives = 197/664 (29%), Gaps = 156/664 (23%)

Query: 39  DHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI--- 94
                  D        +  L   L +  V    H +      L      D+    W    
Sbjct: 367 GGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAK-----LAIH---DLQGRGWTLAG 418

Query: 95  ---CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
               T + A          AL  +              K  +      +    L D +  
Sbjct: 419 VTSDTALAAYLVRPGQRSFALDDLSLRY---------LKRELRADNPEQQQLSLLDDSDG 469

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVA 202
              +A +         V +   + + L  +       + E  +  +   +   G  VD+ 
Sbjct: 470 VDDQAVQTLLLRASAVVDLADALDEELARIDSSALLGNMELPVQRVLAELETAGIAVDLE 529

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TC 259
           +   L      +     +   ++    + +    ++L+  LF E  +     T+T   T 
Sbjct: 530 MLSGLQSEFADQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELEMPKTKRTKTGYTTD 588

Query: 260 QRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
              L S       P    +  +R  A+R  V  ++ L+ A+ SDGR+  T     A+ TG
Sbjct: 589 ADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNAVASDGRIHTTFNQTIAA-TG 645

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KL 376
           R S      QN+P  + +                            +R   +  +G  +L
Sbjct: 646 RLSSTEPNLQNIPIRTEAGRR-------------------------IRDAFVVGDGYGEL 680

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A ++ ++  ++AF TGEDL+    +R+F+V   +VT + R   K M 
Sbjct: 681 MTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMS 740

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L                GL+    +  +K                             
Sbjct: 741 YGL--------------AYGLSAYGLSQQLKI---------------------------- 758

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +   + +  +   V +   ++     +                          
Sbjct: 759 --STEEAKEQMEQYFARFGGVRDYLRDVVDQARK-------------------------- 790

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
           +       GR     ++ ++            R            +Q  + DI+   M+N
Sbjct: 791 DGYTSTVFGRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIN 841

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
             +A          +L VHDE++ E  D +      L    M S   +A  +PL+     
Sbjct: 842 VDQAIKDAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGSA--YALDVPLEVSVGF 899

Query: 670 SKRY 673
            + +
Sbjct: 900 GRSW 903


>gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
 gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692]
          Length = 845

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/598 (16%), Positives = 171/598 (28%), Gaps = 144/598 (24%)

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +P  R     + A             E    S  K+ +                     
Sbjct: 377 GLPYARCFDLSLGAYLLDP--------EQRSYSWDKIRQRH----------------QNQ 412

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
              H +   L        +       + L  +   E  L  +   +  RG  +D+     
Sbjct: 413 LETHPDNNALSIMETGRILRRELANSELLSLMQDIELPLVGVLVRMEKRGLAIDLEAFRR 472

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRV 262
               V  E   L  E+  L      + R  +++   LF +  L     T     +T  +V
Sbjct: 473 FLDEVQEELDGLTHEIYDLAGQ-EFNLRSSQQMAQVLFGDLELPTGRKTPGGVPSTSSQV 531

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L   + + P   ++   R    +     L  L + ++   RL      L A+ TGR S  
Sbjct: 532 LEGLRNVHPIIPKILRFR-TLEKLRSTYLEPLPQKVDDTSRLHTHFNQL-ATATGRLSSS 589

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P                                 +R C +A EG +LV AD +
Sbjct: 590 GPNLQNIPIRGE-------------------------FGPRMRQCFVAPEGSRLVAADYS 624

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RVLA ++ +   L+AF  GED++  T A   ++A   V  + R   K +       
Sbjct: 625 QIELRVLAHLSQDPTLLEAFTQGEDIHSRTAAVIMDIADEHVDSEARRQAKTIN------ 678

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G+     +                               E       
Sbjct: 679 --------FGLLYGMGPQKLS------------------------------RELGISLNE 700

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +   + +  +   VS  +  +  A +Q   +G                           
Sbjct: 701 AKTFIQRYFDRLQGVSAFYERIEDAAKQ---HGYVTTWA--------------------- 736

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN------ 616
             GR  +  D+ +  + L    R+              +VQ  + DI+   M+       
Sbjct: 737 --GRRRLLPDINSRNANLAQQARR---------MAVNTVVQGSAADIIKMAMIEADGDTE 785

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              AG  + L VHDE++ E P      A   L  +M S       +PL  +      +
Sbjct: 786 LADAGARLTLQVHDELLLEVPREAAETAGKRLAAIMASVAD--MDVPLAVDWGVGTNW 841


>gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411]
 gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411]
          Length = 859

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/646 (15%), Positives = 188/646 (29%), Gaps = 157/646 (24%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D        + L E L N   T   H+S      L+    L +       T + A     
Sbjct: 348 DVAPKDE--KALAEWLANPQATKWLHDSKKAYHTLQNQ-GLTLDGVE-HDTSLAAYLLRP 403

Query: 106 ---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD--RNKPNHREAWRLFGEY 160
                +L  V +           G EL       E  + + +  +      EA      Y
Sbjct: 404 DVRTLSLADVVQRH--------VGHELSEGATGPERAQAVAELVKALTPEIEAAGQAELY 455

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              D+ V   +                +   +   G  VD A    L+        +   
Sbjct: 456 --FDLEVPLAL----------------ILAAMEHAGIAVDDAALQELSDDYGARLNEEIA 497

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL--TPQAIQ 275
               L      +    ++L+  LF    L     T+   +T    L         P    
Sbjct: 498 AARELAGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGH 557

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +  +R    +     ++ L+EA+  DGR+  T    GA+ TGR S      QN+P  + +
Sbjct: 558 LMAHR-EYQKMKST-IDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIPVRTDA 614

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAG 394
             +                         +R+     EG   L+ AD + IE RV+A ++ 
Sbjct: 615 GRK-------------------------IRAAFTVGEGYETLLTADYSQIEMRVMAHLSE 649

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   ++A+ +GEDL+    +R F+V   +VT + R   K +   L               
Sbjct: 650 DAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLV-------------- 695

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            GL+    +  +K ++                                 +R+   + ++ 
Sbjct: 696 YGLSAFGLSQQLKISAW------------------------------EAKRIMDNYFERF 725

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V    + + +  ++T                                 GR     ++ 
Sbjct: 726 GGVKRYLDHVVEVAKET--------------------------GYTETLYGRRRYLPELN 759

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
           ++            R            +Q  + DI+   M+   +          ++L V
Sbjct: 760 SSN---RVARENAERAALNAP------IQGTAADIIKLAMLRVDREITRQQLASRVLLQV 810

Query: 629 HDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           HDE+V E    +    + L    M +       +PL         +
Sbjct: 811 HDELVVEVAPGELEQITELVEREMDAAAQ--LRVPLDVSAGTGDNW 854


>gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
 gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876]
          Length = 873

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/663 (12%), Positives = 183/663 (27%), Gaps = 148/663 (22%)

Query: 32  LFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
             A  +    V    C     +  +   +KE   + ++  +  N                
Sbjct: 334 GVAICYKPDSVTFISCEGLITEEYLVSKIKEL--DCEIYTI--NLK-------NHLEYFT 382

Query: 89  P--IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                +     ++A           + E           G  +  R      ++      
Sbjct: 383 DSYKDKIHDIAIMAYLLNP-----LLQEYEYNDIANDFMGITVEGRSDIIGKNKVSSYLT 437

Query: 147 KPNHRE----AWRLFGEYCKGDVTVTREIFKRLEP--LSSKEQELWYLDQTINDRGYCVD 200
               +     A   +  +   D    + + +          E  + Y+ +++   G  V+
Sbjct: 438 DGFDKIVKLFALEAYVAFNSFD-EAMKRLRETDMEKVYHDIELPVIYVLKSMEKYGIAVN 496

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                     + V+   L+Q +         +    ++L   LF +  L     T+   +
Sbjct: 497 KDALKQYGDELSVKIKDLEQSIYKEAGT-EFNINSPKQLGEVLFEKLNLPCGKKTKTGYS 555

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL       P    +   R   ++      + L E +  DGR+  T      + TG
Sbjct: 556 TSADVLEKLSADYPIVDSILEYR-TLAKLKSTYADGLAEYI-VDGRIHSTFNQ-TITATG 612

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P       +                         +R   +  +G   +
Sbjct: 613 RISSTEPNLQNIPIRMELGRK-------------------------IRKVFVPEDGFIFM 647

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R+LA M+G+   ++A+    D++  T ++ F     +VT  QR+  K +  
Sbjct: 648 DADYSQIELRLLAHMSGDDTLIEAYNEDRDIHKITASKVFKTPLDEVTPRQRSNAKAVNF 707

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y            +  L+++                                     
Sbjct: 708 GIVYGIS-----SFGLSRDLSIS------------------------------------- 725

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +     +   +  +    + L ++ ++                          N
Sbjct: 726 --KKEAKEYIDEYFNTYKTLKNYLDNLVKSAKE--------------------------N 757

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR     ++ +             R             Q  + DI+   M+N 
Sbjct: 758 GYTKTIYGRRRPVPELSSGNFMQRQF---GERIAMNSPL------QGTAADIIKIAMINV 808

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670
            K          ++L +HDE++ ET   +E     +    M +  +    +PL  + +  
Sbjct: 809 YKRLKNERLESRLILQIHDELLIETKIGEEEQVRKILSEEMVNAAT--LRVPLAIDIHSG 866

Query: 671 KRY 673
           K +
Sbjct: 867 KDW 869


>gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM
           17244]
          Length = 888

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/636 (15%), Positives = 194/636 (30%), Gaps = 133/636 (20%)

Query: 54  PQVLKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARSNGLP---SAL 109
              L + + +  + IV HN   +   V  +    DI         +            +L
Sbjct: 366 ISELVKIMRS-GLDIVTHNFK-DVYKVFVSQGYDDIHCR--FDIYLGGYVLNPSDERYSL 421

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           + + +       + E+G+ +   F   E +     + K              K       
Sbjct: 422 EVMSKKYLDIDLEEEKGEAVQQSFLDIEDNNKYNMQMKKAKSIYSLAGIFKEKIKEEEME 481

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           ++++      + E +L Y+   +   G+ VD+     L    D     L + +       
Sbjct: 482 DLYQ------NIEHKLMYVLGDMELEGFKVDLNTLEELGVDFDKRVEDLTRNIREAAGED 535

Query: 230 V-SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF + GL     T+   +T   VL   +   P    + + R   S+
Sbjct: 536 EDFNVNSTKQLGHVLFDKMGLPALKKTKTGYSTNIEVLEKLRDHHPIIPMIIDLRQ-ISK 594

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                +  LV  ++ D     +      + TGR S      QN+P  +            
Sbjct: 595 LNSTYVKGLVSLIDKDTNKIHSTFNQTITTTGRISSSNPNLQNIPVRTEEGR-------- 646

Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                             +R   I+S E   LV AD + IE RVLA ++ ++  + +F+ 
Sbjct: 647 -----------------IIRKVFISSSENNVLVDADYSQIELRVLAHISKDEKLINSFKN 689

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            ED++  T +  FNV   +VT + R+  K +   + Y              GL++     
Sbjct: 690 NEDIHTRTASEVFNVPIDEVTSEMRSSAKAVNFGIVYGIS-----DFGLAKGLSIA---- 740

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                  +     +  K+  V +   ++
Sbjct: 741 -----------------------------------RKDAKEYIDTYLSKYPGVCKYMEDI 765

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
               ++  +     +  +RR +  +Y K                                
Sbjct: 766 VVTAKE--QGYVTTMFNRRRYINEIYSKNFN---------------------------VR 796

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPD 638
               R            +Q  + DI+   M+N        K    ++L VHDE++ +TP 
Sbjct: 797 SFGERTA------LNTPIQGSAADIIKLAMVNVQNELNKRKLKAKLILQVHDELIIDTPM 850

Query: 639 TDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +      +L   M +        PLKA+    K +
Sbjct: 851 EEVEEVKALLKDKMENVVD--MSCPLKADISVGKTW 884


>gi|332364060|gb|EGJ41837.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK49]
          Length = 880

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/660 (15%), Positives = 190/660 (28%), Gaps = 149/660 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+G D   + +       ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAWG-DSGQIYV---GSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           +++P        +          + L  +        L +     GK       + E   
Sbjct: 388 IELPAAA-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E      E              +L+ L   EQ L ++   +   G  V+
Sbjct: 447 KHLARKIQVLLETEEPMQEQ--------LRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVE 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    +     L QE+  L      +    ++L T LF + GL L     T+  
Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++   R   S+     +  L EA+ +DG++         ++
Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +      
Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433
            L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K
Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A+                             
Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                   A +   + + ++   +      + +                           
Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+N  +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|332358870|gb|EGJ36692.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1056]
          Length = 880

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/655 (14%), Positives = 187/655 (28%), Gaps = 139/655 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +++P        +             +    +L  Q +    + +  + KG         
Sbjct: 388 IELPAAA-FDARLAKYLL-STVEDNELATIARLYGQTILPTDDEV--YGKGAKRALPEQE 443

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H           +  +        +L+ L   EQ L ++   +   G  V+     
Sbjct: 444 QLFEHLARKVQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQ 503

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQ 260
            +    +     L QE+  L      +    ++L T LF + GL L     T+   +T  
Sbjct: 504 GMQAENEKTLESLTQEIYDLAGQK-FNINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAV 562

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL     + P   ++   R   S+     +  L EA+ +DG++         ++TGR S
Sbjct: 563 DVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQTGRLS 620

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379
                 QN+P                                 +R   +       L+ +
Sbjct: 621 SVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADSVLLSS 655

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438
           D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K +   
Sbjct: 656 DYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKSEDVTPNDRRNAKAVNF- 714

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    A+                                  
Sbjct: 715 -------------GVVYGISDFGLAN------------------------------NLGI 731

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
              A +   + + ++   +      + +                                
Sbjct: 732 SRKAAKDYIQTYFERFPGIKNYMETIVREARD--------------------------KA 765

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            +     R     D+ +             R            +Q  + DIL   M+N  
Sbjct: 766 YVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVAMINLD 816

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 817 RALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
 gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2]
          Length = 861

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/681 (13%), Positives = 193/681 (28%), Gaps = 145/681 (21%)

Query: 13  PIDLTKCGICKYAE-------DVCVILFAFGFDDHPVELW---DCVHDPVMPQVLKEALE 62
             DL + G   YA        D  +  FA    D   E     D + D    + LKE  E
Sbjct: 302 SPDLLQDGALVYANVDNESYYDAQLYGFAISLQD-RTEYIELSDALQDTAFLEWLKE--E 358

Query: 63  NTDVTIVAHNSYFERTVLKACFNLD-IPIHRW-ICTLVLARSNGLPSA-LKAVGEALKLS 119
           N         + ++        + + IP        ++ A       +    + E  +  
Sbjct: 359 NGK-------AVYDAKNFYHALHKNNIPFADVTFDVMIAAFLVDGTLSDYDKLAEKYQFD 411

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              +++       F K    + +       +  A   + +     +       +  E  +
Sbjct: 412 RSLLKD-----DVFGKKGKGKLVDSDEAARYAMAQADYLQDLVAKLDTALREMEMKELFT 466

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           + E  L ++   +   G    ++    + +    +   L  ++  +      +    ++L
Sbjct: 467 TIEMPLTHVLYAMEKEGVVTSLSTLDEIAKATSDKIDALSAKIYEIAGM-EFNINSPKQL 525

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
              L+ E GL       +T   VL       P    +  +R +  +        L + + 
Sbjct: 526 AGILYDELGLKAGKKR-STAADVLEKLASQHPMIPLLLEHR-KYQKIYSTYAVGLSKHVL 583

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            DG++      +  ++TGR S      QN+       +E                     
Sbjct: 584 KDGKIHTIFNQIQ-TQTGRLSSSEPNLQNISVRDEEGKE--------------------- 621

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +R   +ASEG  L+ AD + IE R+LA MA E+  + AF  G D++  T  + F+V
Sbjct: 622 ----IRKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHGIDIHTKTAMQIFDV 677

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
               V  + R   K +                    G +    +                
Sbjct: 678 EHDAVDANMRRSAKTVNF--------------GIVYGQSDFGLSEQ-------------- 709

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                         +   +  +    +      E+         
Sbjct: 710 ----------------LGITRKEAHAFIDKYFASYPNIKNFMDTTIAFCEE--------- 744

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                            +  +     R    +++ +    +    +   R          
Sbjct: 745 -----------------HGYVKTLFNRRRYIKEISDKNYMMREFGK---RAAMNAP---- 780

Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MT 652
             +Q  + D++   M++  K          ++L +HDE++ +  + +      +    M 
Sbjct: 781 --IQGSAADLIKLAMIHIYKKMQEEQVKSRMILQIHDELIFDVWEEELEQMKTIVEEGMQ 838

Query: 653 SNPSWAKGLPLKAEGYESKRY 673
                   +PL AE    + +
Sbjct: 839 HAMK--LRVPLIAEANIGRTW 857


>gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385]
          Length = 925

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/643 (15%), Positives = 198/643 (30%), Gaps = 143/643 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKA 111
             LKE L++ D  IV H+      +L +       I     T + +           L++
Sbjct: 381 DALKEWLQDPDHPIVVHDGKGLLHMLSSEGLTATNIE--HDTRLASYLIHPDFGSFDLES 438

Query: 112 VGEA-LKLS---------SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           V    L             ++   G+++        +               W    ++ 
Sbjct: 439 VVRRRLGRDLYDSDVVSWEEEHRSGRQMSLDVGDLSSDGDDDRSVAGISWPEWAKLADHA 498

Query: 162 KGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           +  + +  E+ K+L+         + E  L  +   +   G  V+      L      + 
Sbjct: 499 EAPLELAEELAKKLDKAGLYSIYENLEIPLVPILFGMERAGIKVNRERMTALRDSTAEKL 558

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
            K  +E  +L      +    ++L+  LF +  L     T+   +T  + +    +  P 
Sbjct: 559 AKEVEEARALVDMPKLNLGSPKQLQEVLFDKLELSKTKKTKTGYSTAAKAIERLAEKHPH 618

Query: 273 A--IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                +  +R    R +   L+ L++A+ SDGR+  T     A+ TGR S      QN+P
Sbjct: 619 PFLDHLLAHREYQKRVST--LDGLIKAIASDGRIHTTFNQ-TATATGRLSSTDPNLQNIP 675

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVL 389
             +                              +R+  +  EG + L+ AD + IE RV+
Sbjct: 676 VRTEEGR-------------------------QIRAAFVPGEGYEALLTADYSQIEMRVM 710

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A  + ++  ++A+ +GEDL+    ++ F+V   +VT + R   K +   L Y        
Sbjct: 711 AHFSQDRGLIEAYRSGEDLHNFVGSQVFDVPVNEVTPELRRRVKALSYGLVYG-----LS 765

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           +   +  L+                                             +++   
Sbjct: 766 EYGLSQQLD---------------------------------------ISVREAKKIMVK 786

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           + ++   V    NE+     +                          +       GR   
Sbjct: 787 YFERFGGVRRYLNEVVDRARK--------------------------DEYTSTMLGRRRY 820

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYD 623
             D+ +             R            +Q  + DI+   M+         K    
Sbjct: 821 LSDLASLN---RQARENAERAALNAP------IQGTAADIIKVAMIRVDAALKKEKLASR 871

Query: 624 IVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKA 665
           ++L VHDE+  E  + +      ++   M      A  +PL+ 
Sbjct: 872 VLLQVHDELDVEVANGELEQVRGIIQREMDEAIELA--VPLEV 912


>gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330]
          Length = 880

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 186/660 (28%), Gaps = 149/660 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLIKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           +++P        +          + L  +        L +     GK       + E   
Sbjct: 388 IELPAAS-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E      E              +L+ L   EQ L ++   +   G  V+
Sbjct: 447 EHLARKIQVLLETEEPMQEQ--------LRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVE 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    +     L QE+  L      +    ++L T LF + GL L     T+  
Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++   R   S+     +  L EA+ +DG++         ++
Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +      
Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433
            L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K
Sbjct: 651 VLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A+                             
Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                   A +   + + ++   +      + +                           
Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+N  +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160]
 gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1]
 gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408]
          Length = 880

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 186/660 (28%), Gaps = 149/660 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           +++P        +          + L  +        L +     GK       + E   
Sbjct: 388 IELPAAA-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E      E              +L+ L   EQ L ++   +   G  V+
Sbjct: 447 EHLARKIQVLLETEEPMQEQ--------LRSHNQLDLLLEMEQPLAFVLAKMEIAGIKVE 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    +     L QE+  L      +    ++L T LF + GL L     T+  
Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++   R   S+     +  L EA+ +DG++         ++
Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +      
Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433
            L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K
Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A+                             
Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                   A +   + + ++   +      + +                           
Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+N  +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53]
          Length = 861

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/668 (12%), Positives = 181/668 (27%), Gaps = 154/668 (23%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-- 84
           D  +  FA    D   E  +   D +        L+  +   V     ++          
Sbjct: 323 DAVLYGFAVSLKDQT-EYIEL-QDALADTRFLAWLKEENGKAV-----YDAKNFYHALHK 375

Query: 85  -NLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             ++    +    ++ A       +    + E  +         + L+     G+  +  
Sbjct: 376 NGIEFADVK-FDVMIAAFLVDGTLSDYDKLAEKYQFD-------RSLLKDDVFGKKGKGK 427

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTI 192
                            Y        +++   L+    +             L ++   +
Sbjct: 428 L--------VDLDEAARYAMLQADHLQDLVSELDASLKEMEMKELFDTIEMPLTHVLYAM 479

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G    ++    + +    +   L  ++  +      +    ++L   L+ E GL   
Sbjct: 480 EKEGVVTSLSTLDEIARATSDKIDTLSAQIYEMAGM-EFNINSPKQLAQILYDELGLKAG 538

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
               +T   VL    K  P    +  +R +  +        L + +  DG++      + 
Sbjct: 539 KKR-STAADVLEKLAKQHPIIPLLLEHR-KYQKIYSTYAVGLSKHVLKDGKIHTIFNQIQ 596

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            ++TGR S      QN+       +E                         +R   +ASE
Sbjct: 597 -TQTGRLSSSEPNLQNISVRDEEGKE-------------------------IRKAFVASE 630

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  L+ AD + IE R+LA MA E+  + AF  G D++  T  + F+V    V  + R   
Sbjct: 631 GHVLLSADYSQIELRMLAHMADEEVMIDAFNHGIDIHTKTAMQIFDVDHDSVDANMRRSA 690

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G +    +                             
Sbjct: 691 KTVNF--------------GIVYGQSDFGLSEQ--------------------------- 709

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                            +   +  +    +   Q  E+                      
Sbjct: 710 ---LGISRKEAHAFIDKYFASYPNIKSFMDSTIQFCEE---------------------- 744

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
               N  +     R    +++ +    +    +   R            +Q  + D++  
Sbjct: 745 ----NGYVKTLFNRRRYIKEISDKNYMMREFGK---RAAMNAP------IQGSAADLIKL 791

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
            M++        +    ++L +HDE++ +  + +      +    M         +PL A
Sbjct: 792 AMIHIFERMRREQVKSRMILQIHDELIFDVWEDELEQMKSIVEEGMQQAMK--LRVPLIA 849

Query: 666 EGYESKRY 673
           E    K +
Sbjct: 850 EANIGKSW 857


>gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057]
          Length = 880

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 185/660 (28%), Gaps = 149/660 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           +++P        +          + L  +        L +     GK       + E   
Sbjct: 388 IELPAAA-FDARLAKYLLSTVEDNELATIARLYGQTVLPTDDEVYGKGAKRALPEQEQLF 446

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E      E              +L+ L   EQ L ++   +   G  V+
Sbjct: 447 EHLARKIQVLLETEEPMQEQ--------LRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVE 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    +     L QE+  L      +    ++L T LF + GL L     T+  
Sbjct: 499 RENLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++   R   S+     +  L EA+ +DG++         ++
Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +      
Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433
            L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K
Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A+                             
Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                   A +   + + ++   +      + +                           
Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+N  +A         ++L VHDEIV E P  +      L    M +    A  +PL A+
Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAAIKLA--VPLVAD 869


>gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684]
 gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684]
          Length = 884

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 107/639 (16%), Positives = 188/639 (29%), Gaps = 161/639 (25%)

Query: 50  DPVMPQVLKEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--- 105
               P+VL  A+ E   +   AH    +   L+     ++P      TL+ A        
Sbjct: 388 GDAGPEVLAAAIGERPAL---AH----DAKALR-----EVPATLAHDTLIAAYLLEPARR 435

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              L  + E   + +   +                    R +   RE   LF      DV
Sbjct: 436 SYPLDELTEERGIGTDVEDAAAADAILVHALT----AAQRPQLEERELLPLF-----DDV 486

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +                    + + +   G  +D  L  T+   V  E   L++E+  L
Sbjct: 487 ELPL----------------VRVLRAMETAGLRLDTELLATIRTRVMDEAVALEREIWEL 530

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           T          ++L   LF + GL  +       +T  RVL + +   P   ++      
Sbjct: 531 TG-EEFMIGSPQQLGQILFEKLGLSRKRRGKTGYSTDARVLQAIRGEHPVIEKIER-WRE 588

Query: 283 ASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            ++ A   L+ L   ++  D RL  T   + A+ TGR S      QN+P  +    E   
Sbjct: 589 LTKLASTYLDALPLLISPEDHRLHTTFNQVTAA-TGRLSSTNPNLQNIPIRTPLGRE--- 644

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R+C +A  G  L+ AD + +E RVLA +AGE+   + 
Sbjct: 645 ----------------------IRACFVAEPGNVLISADYSQVELRVLAHIAGEEVLKEI 682

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  GED++  T A    + P Q+    R+                         GL+   
Sbjct: 683 FRRGEDVHTATAAAILGIDPEQLDAGSRSKA--------------KMVNYGIVYGLSAFG 728

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A  ++                                    +     +      V    
Sbjct: 729 LADRLQI------------------------------PREEAQEFIDRYLDGFPAVQAFI 758

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                  EQ  + G                             GR     ++      + 
Sbjct: 759 RT---TIEQATDQGYVTTL-----------------------MGRRRQIPELRARNYQMR 792

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
               +L             ++Q  + D++   M+NA +A         ++L +HDE++ E
Sbjct: 793 QLGERL---------AVNTVIQGTAADVIKLAMVNADRALHASGLRTRLILQIHDELLFE 843

Query: 636 TPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P  +   A  ++   M          PL  +      +
Sbjct: 844 GPAEEAEQARDLVVPQMVDALELDP--PLVVDAGIGPNW 880


>gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 936

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 95/673 (14%), Positives = 187/673 (27%), Gaps = 139/673 (20%)

Query: 28  VCVILFAFGFDDHPVELWDCVHD-----------PVMPQVLKEALENTDVTIVAHNSYFE 76
             +I      D           D             +  +L+  LEN  +  V  +  F 
Sbjct: 372 ANIISICLSIDTKESAYIPIKTDSINNHQNFLYLEEILSILQPTLENEKIKKVGQHLKFS 431

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
            ++LK   N+++        ++          L        + +   ++   ++  F K 
Sbjct: 432 YSILKRY-NINLAGMA-FDVILELYI------LYGTANYHDIKNFLDKDTFNVVTNFKKN 483

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-----------QEL 185
             +    + N  +  +  +L   Y    +     +   L P                  L
Sbjct: 484 YDN--YNENNILSDLQNIQLQSLYAAKFIKSLFNLHHTLWPKIEANNKLKKIFEEVEMPL 541

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   I + G  +D  L +T    +D     L+ E   L      +    ++L+  L+ 
Sbjct: 542 ISILSRIENYGVLIDKKLLNTHAVELDYRLHALELEAYQLVGTP-FNLASTKQLQEILYN 600

Query: 246 ETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
           +  L           +T + VL    K       +   R   S+     +N L+  +N  
Sbjct: 601 QQKLPILKKTPKGAPSTNEEVLKKLSKKYSMPRIILQYR-ALSKLQSTYINKLIAMINKK 659

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
                T      + TGR S      QN+P  +    +                       
Sbjct: 660 SNRVHTSYNQTRTSTGRLSSTSPNLQNIPNRNYDGRK----------------------- 696

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA +   +V AD + IE R++A ++ +   +  F + +D++  T +  F  A 
Sbjct: 697 --IRQAFIAPKNFLIVAADYSQIELRIMAHLSQDIELINDFLSEKDIHTATASEIFVTAL 754

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
             VT +QR   K +   L Y   A           L++         +     +     +
Sbjct: 755 HLVTDEQRQRAKTINFGLIYGMSA-----FGLARQLSVTCKEAQKYVDRYFNRYPGVMKY 809

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            + ++E+  ++       G             +S          +A       G A    
Sbjct: 810 MQHIREHANKYGYVSTLDGRRLYLP-----DIYSANILQKKGAERAAINAPMQGSAADII 864

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
           K+  + +    +                                                
Sbjct: 865 KKAMISIDNWLQKDEIP------------------------------------------- 881

Query: 602 VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKG 660
               +R I+                 VHDE+V E  +         +  LM     +   
Sbjct: 882 ----ARIIM----------------QVHDELVFEVHNDIVDPVVKKIKKLMEEC--FIMD 919

Query: 661 LPLKAEGYESKRY 673
           +PLK +    K +
Sbjct: 920 VPLKVDVGIGKNW 932


>gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
 gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8]
          Length = 857

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/506 (16%), Positives = 160/506 (31%), Gaps = 119/506 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  L  +  ++   G   D        + +  +   L  ++  L  G   +    +
Sbjct: 456 FNEVEMPLCEVLASMEHYGVRADTDGIREFGKGLKKDIEALTSQIYDLAGG-EFNIASPK 514

Query: 238 KLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF + GL  +  T++   T   VL       P    V   R   ++     +++L
Sbjct: 515 QLGEVLFEKLGLPAKKKTKSGYSTNAEVLEELADKHPIVGLVLEYR-TLTKLNSTYVDSL 573

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ + +DGR+R   +    +RTGR S      QN+P                        
Sbjct: 574 LKEVEADGRVRSVFKQ-TETRTGRISSTEPNMQNIPVRKEIGR----------------- 615

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   +A +G   + AD + IE RVLA + G++   K F  G D++  T +
Sbjct: 616 --------NMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFADGTDIHTMTAS 667

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + F +    V  + R+  K +   +                G+   + +  +        
Sbjct: 668 QVFGIPADAVLPEMRSAAKAVNFGII--------------YGIGAFSLSKDI-------- 705

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                        ++  K +     +VSE      +  E  I+N
Sbjct: 706 ----------------------GVSVKEAKQYIKNYLDNFPKVSEFM---DKTVEDGIKN 740

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G                             GR     ++      +    +   R     
Sbjct: 741 GYVTTI-----------------------FGRRRYIPELAATNKVMQAFGK---RAAMNA 774

Query: 595 GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET-PDTDEFNASML 647
                  +Q  + DI+   M+   K          ++L VHDE++ E  PD  E   ++L
Sbjct: 775 P------IQGAAADIIKMAMVKVYKRLKAEKLDARLILQVHDELIIEVTPDDKEKAKAIL 828

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673
              M    ++   +P++    E + +
Sbjct: 829 KEEMEKAVNFT--VPMEVSVGEGESW 852


>gi|332364956|gb|EGJ42724.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK355]
          Length = 880

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/669 (14%), Positives = 185/669 (27%), Gaps = 155/669 (23%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++          +  + D            ++ Q L +               ++   
Sbjct: 326 FEILGDNYHKEEIVSLAWGDSRQIYV--GTSDLLQQPLFQEFLTKTALKT-----YDLKR 378

Query: 79  --VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIA 131
             VL + + +++P        +          + L  +        L +     GK    
Sbjct: 379 TKVLLSHYGIELPAAA-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKR 437

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              + E       R      E      E              +L  L   EQ L ++   
Sbjct: 438 ALPEQERLFEHLARKVQVLLETEEPMLEQ--------LRAHDQLNLLLEMEQPLAFVLAK 489

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  V+      +    +     L QE+  L      +    ++L T LF + GL L
Sbjct: 490 MEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPL 548

Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+   +T   VL     + P   ++   R   S+     +  L EA+ +D ++  
Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADSKIHT 607

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  ++TGR S      QN+P                                 +R 
Sbjct: 608 RYVQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 641

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQV 424
             +       L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     V
Sbjct: 642 AFVPEWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDV 701

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T + R   K +                    G++    A+                    
Sbjct: 702 TPNDRRNAKAVNF--------------GVVYGISDFGLAN-------------------- 727

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                            A +   + + ++   +      + +                  
Sbjct: 728 ----------NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD-------------- 763

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          +     R     D+ +             R            +Q 
Sbjct: 764 ------------KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQG 802

Query: 605 VSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSW 657
            + DIL   M+N  +A         ++L VHDEIV E P+ +      L    M +    
Sbjct: 803 SAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKATMEAAIEL 862

Query: 658 AKGLPLKAE 666
           A  +PL A+
Sbjct: 863 A--VPLVAD 869


>gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405]
          Length = 880

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 186/660 (28%), Gaps = 149/660 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           +++P        +          + L  +        L +     GK       + E   
Sbjct: 388 IELPAAA-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E      E              +L+ L   EQ L ++   +   G  V+
Sbjct: 447 EHLARKIQVLLETEEPMQEQ--------LRSHNQLDLLLEMEQPLAFVLAKMEIAGIKVE 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    +     L QE+  L      +    ++L T LF + GL L     T+  
Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++   R   S+     +  L EA+ +DG++         ++
Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +      
Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433
            L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K
Sbjct: 651 VLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A+                             
Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                   A +   + + ++   +      + +                           
Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+N  +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|332287087|ref|YP_004421988.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1]
 gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC]
 gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10]
 gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC]
          Length = 869

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/656 (14%), Positives = 190/656 (28%), Gaps = 129/656 (19%)

Query: 30  VILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
           ++  A   D   V   D  H    +   LK+  +  D     +N   +   LK    + I
Sbjct: 328 LMGVALACD-EQVYYVDIEHAQDDVITPLKDFFKRKDTEFYGYNIKRDHHALKNA-GIHI 385

Query: 89  PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                    +        +  + + +     L     + GKE                  
Sbjct: 386 DNITL-DLALAEHLINGGAKISYQTLLVDHGLMESAGKYGKEWGQLSLPILKSPAKPAEY 444

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                       +          +I    +   + E  L  +  TI   G  +DV     
Sbjct: 445 FGEFVSHLPKIKKSLLE----ELKIKGVEDLFFNMEMPLENVLFTIERNGMPLDVEDLQE 500

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           L + +  E   L  ++ +L      + +  ++L   L+ + GL   D   +T   VL + 
Sbjct: 501 LERTLSEELAILTDDIYTLAG-ASFNIKSPKQLSDVLYNKLGLTPIDKARSTKAEVLEAL 559

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFP 325
                   ++   R    +     +  L   ++    R+  T   +G + TGR +     
Sbjct: 560 LGEHEIVEKILAFR-AIEKLLSTYVKALPRQIDPHTSRIHPTFNQMG-TVTGRLACQDPN 617

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLVVADLAGI 384
            QN+P  S                              +R       +    + AD + I
Sbjct: 618 LQNIPIRSERGR-------------------------LLRKAFRDTRQNNYFLSADYSQI 652

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R LA ++ ++    AFE+ ED++  T ++ F+V   +VTK QR   K +         
Sbjct: 653 ELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTVN-------- 704

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G                              +     +       +  +
Sbjct: 705 ------FGIIYG------------------------------QQAYGLSKILKISVSEAQ 728

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           ++  A+  ++  V+   +E      +                          NL +    
Sbjct: 729 KLIDAYFDRYPAVARFIDETISQACE--------------------------NLRVKTLL 762

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618
           GR          R   N T    +R  + G       +Q  + +++   M+         
Sbjct: 763 GR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLADALEKR 812

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           K    ++L +HDE++ E P+ ++     L   +M S       +PL       K +
Sbjct: 813 KLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAM--ILSVPLVVNILIGKNW 866


>gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 873

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/596 (14%), Positives = 166/596 (27%), Gaps = 137/596 (22%)

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              R     +LA                            L  RF          D    
Sbjct: 400 KTARVHDMSLLAYLLDPTRTN------YGYL--------YLTERFSVPSIASGSVDVECV 445

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
           +  +A     E          E++   E   + E  L +    +   G  +D        
Sbjct: 446 SMVKALLAMNEVACESARRE-ELWSLYE---TIELPLIHTLVVMEKNGIYIDTEKLAETT 501

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
                E  ++ QE+  +      +    ++L   LF +  L +   T+   +T   VL  
Sbjct: 502 ARFKEELAQVQQEIYDIAG-ETFNINSPKQLGVILFEKMNLPIIKKTKTGYSTDAEVLDM 560

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +  +P   ++   R   ++        L   +N   +   T      + TGR S     
Sbjct: 561 LRHESPIVEKILAYR-SVAKLVSTYCEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPN 619

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384
            QN+P  +    E                         +R+      G   LV AD + I
Sbjct: 620 LQNIPVRTEKGRE-------------------------IRALFYPGAGYDTLVSADYSQI 654

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++G++  +KAF  G+D++  T A     +   VT ++R+  K +         
Sbjct: 655 ELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQEDVTSEERSHAKAINFG------ 708

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G++    +                               +        +
Sbjct: 709 --------IIYGISDFGLS------------------------------RDLGITRGEAK 730

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                +  ++ +V E  + + Q   +T +                          +    
Sbjct: 731 NYIDLYFSRYPKVKEYMDRMVQEAHETGK--------------------------VRTMF 764

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--- 621
           GR     D+ +             R            +Q  + DI+   M    +     
Sbjct: 765 GRQRELPDINSRNF---NRRSFAERTAMNTP------IQGTAADIIKLAMNQVEQKLEEG 815

Query: 622 ---YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                ++L VHDE+V E  +++      L    M S       + L  + + ++ +
Sbjct: 816 NFTSRLLLQVHDELVLEVVNSELEAVEELLRTTMQSVVE--LQVHLIVDVHHAENW 869


>gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
 gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA]
          Length = 880

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/660 (14%), Positives = 185/660 (28%), Gaps = 149/660 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLAKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           +++P        +          + L  +        L +     GK       + E   
Sbjct: 388 IELPAAS-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E      +              +L+ L   EQ L ++   +   G  V+
Sbjct: 447 EHLARKVQVLLETEEPMKDQ--------LRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVE 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL--HLEDLTE-- 256
                 +    +     L QE+  L      +    ++L T LF + GL       T+  
Sbjct: 499 RETLQGMQVENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLSLEYTKKTKTG 557

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++   R   S+     +  L EA+ +DG++         ++
Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +      
Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433
            L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K
Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKTEDVTPNDRRNAK 710

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A+                             
Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                   A +   + + ++   +      + +                           
Sbjct: 728 -NLGISRKAAKDYIETYFERFPGIKNYMETIVREARD----------------------- 763

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+N  +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 812 MINLDRALTEENFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 945

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/658 (13%), Positives = 189/658 (28%), Gaps = 137/658 (20%)

Query: 33  FAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            A    D    + D     P   + L   L +     + H +     V          + 
Sbjct: 403 IAIVDTDRRAVVADLADITPEAEKALAGWLADEASPKLLHGAK---AVFHMLAGRGFELR 459

Query: 92  RW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + A           + +          +                L   +  + 
Sbjct: 460 GIEHDTAIAAYLLRPGQRTYELADVY--------QRHLQRQLNPSNNGSNQLTLLDAGDS 511

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLN 208
           +          +    +T ++ +       ++ E+    +   +   G  VDVA      
Sbjct: 512 QVLVDEAVAILELAGELTSQLQEINGFELYRDLEIPLLSILARMEATGIAVDVATLEEQL 571

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
           +    + T+ ++    L      +    ++L+T LF   G+     T+   +T    + +
Sbjct: 572 ETFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAAEIEA 631

Query: 266 N--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
              K   P    +  +R    +     L  L+ ++ SDGR+  T     A  TGR S   
Sbjct: 632 LAAKNPHPFLDHLLAHRQY-QKMKTT-LEGLIRSVGSDGRIHTTFNQTVA-STGRLSSTD 688

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382
              QN+P  + +  +                         +RS  +  EG   L+ AD +
Sbjct: 689 PNLQNIPVRTEAGRK-------------------------IRSGFVVGEGYETLLTADYS 723

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RV+A ++ +   ++A+  GEDL+    ++ F+V    VT + R   K M   L   
Sbjct: 724 QIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFDVPIDGVTPELRRRVKAMSYGLV-- 781

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        GL+    +                                       
Sbjct: 782 ------------YGLSAFGLSQQ------------------------------LGIPAGE 799

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            + + +++ ++   V     E+ +   +                          +     
Sbjct: 800 AKTIMESYFERFGGVQRYLAEVVEQARK--------------------------SGYTET 833

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             GR     ++ ++            R            +Q  + DI+   M+   +   
Sbjct: 834 LFGRRRYLPELNSDN---RVARENAERAALNAP------IQGTAADIIKVAMIRVDRELR 884

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE+V E    +      +L   M +  +    +PL+      + +
Sbjct: 885 ATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNAIT--LRVPLEVSAGSGRDW 940


>gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
 gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1]
          Length = 909

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/674 (13%), Positives = 179/674 (26%), Gaps = 134/674 (19%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76
            + GI  Y E+  +   A   +   V L+ C     + Q       +     + + +  E
Sbjct: 349 KEAGISIYKENDAMW-VALNTEGEEVYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME 407

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARF 133
                +   +           + A              +    K     +   KELI + 
Sbjct: 408 VKEHLSHLTIHEMTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMM--LPSKKELIDK- 464

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCK----GDVTVTREIFKRLEPLSSKEQELWYLD 189
            K          +       +  +          D     E+          E    +  
Sbjct: 465 -KHPMVTDGVLSDAGKKIMGYEAYISREAIQPLSDKLTELEMMDLYR---EIEIPTMFAL 520

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +  RG  VD          +     +L + +         +    ++L   LF    L
Sbjct: 521 HDMEVRGIHVDSKALKGYGDQLVGRIEELQESIYKEAG-EEFNINSPKQLGVVLFDHMKL 579

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+   +T   VL   + L P    +   R   ++      + L   +  D R+ G
Sbjct: 580 EGAKKTKTGYSTSVEVLEKIEHLYPIIPMILEYRQ-LTKLKSTYADGLANFIQDDQRIHG 638

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P                                 +R 
Sbjct: 639 KFNQ-TITATGRISSTEPNLQNIPIRMELGRA-------------------------IRK 672

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
             +  EG   + AD + IE RVLA ++ ++  + A+E  +D++  T +  F +   +VT 
Sbjct: 673 VFLPEEGYIFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASEVFGIPMDEVTS 732

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
            QR   K +                    GL+                            
Sbjct: 733 TQRRDAKAVNF--------------GIIYGLS---------------------------- 750

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                 + +        +     +   + RV E    L    E+   +G           
Sbjct: 751 --AFGLSQDLKISRKQAQEYIDRYFAMYPRVKEF---LDGEVEKGKTDGYVKTMFN---- 801

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                              R     ++ ++            R            +Q  +
Sbjct: 802 -------------------RIRPIPELKSSNFMQRNF---GERVAMNSP------IQGTA 833

Query: 607 RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659
            DI+   M+         +    ++L +HDE++ ET   +      +  + M +  S   
Sbjct: 834 ADIIKIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNAVS--L 891

Query: 660 GLPLKAEGYESKRY 673
            +PL  +  +   +
Sbjct: 892 RVPLNIDIEQGASW 905


>gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629]
 gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1]
          Length = 903

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 102/651 (15%), Positives = 193/651 (29%), Gaps = 149/651 (22%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV-LKACFNLDIP 89
           +  +  F +  +    C  D +    L E L   +V         +    L    + +I 
Sbjct: 356 LAVSICFSEEDIYFI-CTGDEISSSFLDEKLNTLEVKSW---ISPDLKTNLHRFKSKEIK 411

Query: 90  I---HRWICTLVLARSNGL---PSALKAVGEALK---LSSQKMEEGK----ELIARFCKG 136
                R+   +V A             AV +      LSS+K   GK    +++    K 
Sbjct: 412 ADDRGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKEDEKK 471

Query: 137 ETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                 Y+            +   E    D+                E  L ++   + +
Sbjct: 472 AVDCACYEVYTAWKSKPVLLQKLKE---MDMLTLYR---------DIELPLVFVLYDMEN 519

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G   D          + V  T+L++++         +    ++L   LF + GL  E  
Sbjct: 520 EGIRADGIKLKEYGDKLAVSITELEKKIYEAAG-EEFNINSPKQLGVILFEKLGLPNEKK 578

Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+   +T   VL       P    +   R   ++      + L   + SDG++  TL   
Sbjct: 579 TKTGYSTAADVLEKLAPEYPIVADILEYRQ-LTKLKSTYADGLSGYIASDGKIHTTLNQ- 636

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             + TGR S      QN+P                             +   +R   +  
Sbjct: 637 TITATGRLSSTEPNLQNIPIRIE-------------------------LGKLIRKVFLPE 671

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           EG   V +D + IE RVLA ++G++  ++AF+ G+D++ +T +  F+    +VT  QR  
Sbjct: 672 EGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRN 731

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +                    G++                                 
Sbjct: 732 AKAVNF--------------GIVYGIS------------------------------AFG 747

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
            + +        +    ++  K+ ++ E    L Q      +NG                
Sbjct: 748 LSNDLGISRKEAQGYIDSYFVKYPKIKEF---LDQTVLDAKKNGYTKTM----------- 793

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                        GR     ++ ++            R            +Q  + DI+ 
Sbjct: 794 ------------FGRIRPIPELNSSNFMQRQF---GERVAMNSP------IQGTAADIIK 832

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655
             M+              ++L VHDE++ ET + ++     +L   M    
Sbjct: 833 IAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRGAV 883


>gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
 gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656]
          Length = 903

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 101/652 (15%), Positives = 194/652 (29%), Gaps = 149/652 (22%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV-LKACFNLDIP 89
           +  +  F +  +    C  D +    L E L   +V         +    L    + +I 
Sbjct: 356 LAVSICFSEEDIYFI-CTGDEISSSFLDEKLNTLEVKSW---ISPDLKTNLHRFKSKEIK 411

Query: 90  I---HRWICTLVLARSNGL---PSALKAVGEALK---LSSQKMEEGK----ELIARFCKG 136
                R+   +V A             AV +      LSS+K   GK    +++    K 
Sbjct: 412 ADDRGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKEDEKK 471

Query: 137 ETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                 Y+            +   E           +++        E  L ++   + +
Sbjct: 472 AVDCACYEVYTAWKSKPVLLQKLKE------MNMLTLYR------DIELPLVFVLYDMEN 519

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G   D          + V  T+L++++         +    ++L   LF + GL  E  
Sbjct: 520 EGIRADGIKLKEYGDKLAVSITELEKKIYEAAG-EEFNINSPKQLGVILFEKLGLPNEKK 578

Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+   +T   VL       P    +   R   ++      + L   + SDG++  TL   
Sbjct: 579 TKTGYSTAADVLEKLAPEYPIVADILEYRQ-LTKLKSTYADGLSGYIASDGKIHTTLNQ- 636

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             + TGR S      QN+P                             +   +R   +  
Sbjct: 637 TITATGRLSSTEPNLQNIPIRIE-------------------------LGKLIRKVFLPE 671

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           EG   V +D + IE RVLA ++G++  ++AF+ G+D++ +T +  F+    +VT  QR  
Sbjct: 672 EGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRN 731

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +                    G++                                 
Sbjct: 732 AKAVNF--------------GIVYGIS------------------------------AFG 747

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
            + +        +    ++  K+ ++ E    L Q      +NG                
Sbjct: 748 LSNDLGISRKEAQGYIDSYFVKYPKIKEF---LDQTVLDAKKNGYTKTM----------- 793

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                        GR     ++ ++            R            +Q  + DI+ 
Sbjct: 794 ------------FGRIRPIPELNSSNFMQRQF---GERVAMNSP------IQGTAADIIK 832

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656
             M+              ++L VHDE++ ET + ++     +L   M     
Sbjct: 833 IAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRGAVD 884


>gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
 gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020]
          Length = 879

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 95/666 (14%), Positives = 196/666 (29%), Gaps = 155/666 (23%)

Query: 34  AFGFDDHPVELWD----CVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNL 86
           AF + +            +  P   + L E +           + ++     VL +   +
Sbjct: 339 AFAWGNSDYIYVSKDSALLTGPSFTKRLAEPI-----------ATYDFKRSKVLLSHLGI 387

Query: 87  DIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           D+P   +    +             + +  +   L + + ++  GK +   F + E    
Sbjct: 388 DLPQANY-DARLANYLLSNIEDNELATIARLHTNLNMEADEVVYGKGVKRAFPEDEALFD 446

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
              R         +      K  V    +++         E  L  +   +   G  V+ 
Sbjct: 447 HLARKI-QVLVDSKAVIL-DKLAVNKEEDLYF------DIELPLANVLAKMEIAGITVNK 498

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256
                + +        L +E+  +      +    ++L + LF +    L +   T+   
Sbjct: 499 TALQEMAEQNKAVIESLTEEIYEMAG-EEFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 557

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL     + P   ++ + R   S+     +  L + + SDG++         ++T
Sbjct: 558 STAVDVLERLAPIAPIVAKILDYRQ-ISKLQSTYVIGLQDYIMSDGKIHTRYIQD-LTQT 615

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P                                 +R   + S E   
Sbjct: 616 GRLSSSDPNLQNIPVRLEQGR-------------------------LIRKAFLPSSEDAV 650

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF+   D++ +T  R F +   +  T + R   K 
Sbjct: 651 LLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAMRVFGIEKEEDVTPNDRRNAKA 710

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +                    G++    ++                              
Sbjct: 711 VNF--------------GIVYGISDFGLSN------------------------------ 726

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                    +   + + +++  + E    + +    T                       
Sbjct: 727 NLGITRKKAKDYIETYFERYPGIKEYMETVVRDARDT----------------------- 763

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                +     R     D+ +             R            +Q  + DIL   M
Sbjct: 764 ---GYVETLFNRRRELPDINSRNF---NIRSFAERTAINSP------IQGSAADILKIAM 811

Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEG 667
           +N  KA         ++L VHDEIV E P+ +      ++   M      A  +PL A+ 
Sbjct: 812 INLDKALSEGQFKAKMLLQVHDEIVLEVPNDELEAIKALVKKTMEGAVDLA--VPLLADE 869

Query: 668 YESKRY 673
              K +
Sbjct: 870 NTGKTW 875


>gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
 gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185]
          Length = 905

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 105/667 (15%), Positives = 194/667 (29%), Gaps = 146/667 (21%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
             A   +       D        +  L E L +       H++      L     L +  
Sbjct: 357 GLAIADESGRAAYVDLTTLAPEDEQALAEWLADVTKAKALHDAKGPMHALA-ARGLTLAG 415

Query: 91  HRWICTLVLARSNGL---PSALKAVGEALKL----SSQKMEEGKELIARFCKGETHECLY 143
                T + A            + +           + K   G+ ++     G   +   
Sbjct: 416 LT-NDTAIAAYLVRPDQRSYGFEDLLLRYCHIELPETSKQAAGQGMLDLGDVGA-TQGDD 473

Query: 144 DRNKPNHREAWRLFGEYCKGDV---TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
              +           +    DV    +  E+          E  +  +  T+   G  VD
Sbjct: 474 AMARAAAVATLAAALDEAVADVGGIELMAEL----------ELPIVEVLATMEQAGIAVD 523

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT-- 258
           +   H L    D +     Q+      G   +    ++L+  LF   GL     T+T   
Sbjct: 524 LDALHELEADYDAQVVAAQQDAWDAIGGEQVNLGSPKQLQVVLFETLGLPKTKKTKTGYT 583

Query: 259 -CQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
                ++   +    P    +  +R  AS+     +  L++++  DGR+  T Q   A+ 
Sbjct: 584 TDAEAIADLSEKAPHPFLDALLRHR-DASKLRST-VQGLIKSIGDDGRIHTTYQQTIAA- 640

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  + S                            +R   +  EG  
Sbjct: 641 TGRLSSTDPNLQNIPIRTESGRR-------------------------IRRVFVVGEGYD 675

Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+ AD + IE RV+A ++G++  ++AF  GEDL+    +R F V P++VT + RA  K 
Sbjct: 676 CLMSADYSQIEMRVMAHLSGDEGLIQAFNDGEDLHRFVGSRVFGVEPSEVTSEMRAKVKA 735

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           M   L Y            +  L                                     
Sbjct: 736 MSYGLAYG-----LSAFGLSKQL------------------------------------- 753

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                    +R+   + ++   V +   ++      T                       
Sbjct: 754 --RISTAEAQRLMDGYFERFGGVRDYLRQIVDDARAT----------------------- 788

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                     GR     D+ ++            R            +Q  + DI+ + M
Sbjct: 789 ---GYTETMMGRRRYLPDLTSDN---RQRRDMAERMALNAP------IQGSAADIMKKAM 836

Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
           +   +A         ++L VHDE++ E    +      +    M +    A  +PL    
Sbjct: 837 LGVDEALRAANLRSRVLLQVHDELIVEVGAGERDEVERIVREQMGAAADLA--VPLDVNV 894

Query: 668 YESKRYR 674
              + ++
Sbjct: 895 GTGRSWQ 901


>gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1]
          Length = 880

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 97/655 (14%), Positives = 187/655 (28%), Gaps = 139/655 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +++P        +             +    +L  Q +    + +  + KG         
Sbjct: 388 IELP-AATFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEV--YGKGAKRALPEQE 443

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H           +  +        +L+ L   EQ L ++   +   G  V+     
Sbjct: 444 QLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLFEMEQPLAFVLAKMEIAGIKVERETLQ 503

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQ 260
            +    +     L QE+  L      +    ++L T LF + GL L     T+   +T  
Sbjct: 504 GMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAV 562

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL     + P   ++   R   S+     +  L EA+ +DG++         ++TGR S
Sbjct: 563 DVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQTGRLS 620

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379
                 QN+P                                 +R   +       L+ +
Sbjct: 621 SVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADSVLLSS 655

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438
           D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K +   
Sbjct: 656 DYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNF- 714

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    A+                                  
Sbjct: 715 -------------GVVYGISDFGLAN------------------------------NLGI 731

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
              A +   + + ++   +      + +                                
Sbjct: 732 SRKAAKDYIQTYFERFPGIKNYMETIVREARD--------------------------KG 765

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            +     R     D+ +             R            +Q  + DIL   M+N  
Sbjct: 766 YVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVAMINLD 816

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 817 RALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
 gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476]
          Length = 878

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 87/604 (14%), Positives = 167/604 (27%), Gaps = 149/604 (24%)

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           D+    +    + A          A  A+ +      L   K ++    +          
Sbjct: 403 DVRHADYFDIGLAAYLLNSNTDVFAYDALADTYLASSLPETKDDDAAAAVHVLVAPRLVN 462

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
            L +                   D   + +++ +++        L      +   G  +D
Sbjct: 463 ALRE-----------------ALDKDGSADVYYKID------LPLVSTLTLMERVGAQLD 499

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ET 257
           V     +      E   L   +  L      +    ++L   LF + GL     T    +
Sbjct: 500 VDALAAMGSATRGEIDSLRAHIHELAG-EEFNVDSPKQLGVILFDKLGLPHGKKTRTGYS 558

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T    L   + + P A +V   R   ++ +   ++ L      DGR+         + TG
Sbjct: 559 TNAATLKKLQSIHPIADEVLRYR-ELAKMSSTYIDALPRMRADDGRVHTHFNQTVTT-TG 616

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376
           R S      QN+P  +                              +R C +   EG   
Sbjct: 617 RLSSSDPNLQNIPVRTDFGRR-------------------------IRECFVPLHEGDVF 651

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + IE R+LA ++G++  + AF +G D +  T AR F+V   +VT   R+  K + 
Sbjct: 652 VSADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAARVFDVPVDEVTPQLRSRAKAVN 711

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             +                                               +     A   
Sbjct: 712 FGIV--------------------------------------------YGQQAFGLAQSL 727

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  + +   + + +  V      L +  E   + G A+                  
Sbjct: 728 DIGFKEAQDMIDRYFEAYPGVRSY---LDKTVEDAKQTGYAVTM---------------- 768

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                   GR     ++    +          R            +Q  + DI+   M  
Sbjct: 769 -------FGRKRHIPELKMRNAVQRGF---GERTAMNHP------MQGSAADIIKLAMNE 812

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
             +          ++L VHDE+    P  +    S +   +M++       +PL  +   
Sbjct: 813 VQRRLIEDGFESQLMLQVHDELDLSVPADELERLSDMVREVMSTIVE--LKVPLLVDVSS 870

Query: 670 SKRY 673
              +
Sbjct: 871 GPNW 874


>gi|332364041|gb|EGJ41819.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1059]
          Length = 880

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 186/660 (28%), Gaps = 149/660 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           +++P        +          + L  +        L +     GK       + E   
Sbjct: 388 IELPAAA-FDARLAKYLLSTVEDNELVTIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E      E              +L+ L   EQ L ++   +   G  V+
Sbjct: 447 KHLARKIQVLLETEEPMQEQ--------LRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVE 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    +     L QE+  L      +    ++L T LF + GL L     T+  
Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++   R   S+     +  L EA+ +DG++         ++
Sbjct: 558 YSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +      
Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433
            L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K
Sbjct: 651 VLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A+                             
Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                   A +   + + ++   +      + +                           
Sbjct: 728 -NLGISRKAAKDYIETYFERFPGIKNYKETIVREARD----------------------- 763

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+N  +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 812 MINLDRALTEKNFNSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
 gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic]
          Length = 875

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/630 (13%), Positives = 181/630 (28%), Gaps = 146/630 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +   L +  +  + ++      +LK   N    I       ++  +     + K + +  
Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK-- 431

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                K    + +I    K   +     +      +  + F  Y   D            
Sbjct: 432 --EVLKETWIENIIIESAKIVINFITLYKQTIWELKDNKTFRLYSNID------------ 477

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                   + ++   +   G  VD      L+     E  KL++E+ +L+     +    
Sbjct: 478 ------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIGSP 530

Query: 237 EKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           ++L   LF +  L          + +T   +L    +       +     + ++      
Sbjct: 531 KQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYT 590

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++L + +++      T     ++ TGR S      QN+P  S                  
Sbjct: 591 DSLPKQIDNITHRVHTKFLQTSTTTGRLSSQEPNLQNVPIRSSEGN-------------- 636

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  
Sbjct: 637 -----------QIRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQ 685

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T  + FN+   ++T + R   K +                    G++             
Sbjct: 686 TACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS------------- 718

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                A +            K +  ++  V E   +        
Sbjct: 719 -----------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA--- 758

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                   +N  +    GR      + + +       +   R  
Sbjct: 759 -----------------------SSNGYVTNCFGRKCFVPLIHDKK-----LKQFAERAA 790

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+   M+N        K    +VL +HDE++ E P  +     
Sbjct: 791 INAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIIT 844

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            ++  +M +  S    +P+  E      + 
Sbjct: 845 PIIKKIMEN--STNMDVPIITEIRAGNNWM 872


>gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678]
          Length = 880

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 97/655 (14%), Positives = 187/655 (28%), Gaps = 139/655 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +++P        +             +    +L  Q +    + +  + KG         
Sbjct: 388 IELPAAA-FDARLAKYLL-STVEDNELATIARLYGQTILPTDDEV--YGKGAKRALPEQE 443

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H           +  +        +L+ L   EQ L ++   +   G  V+     
Sbjct: 444 QLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQ 503

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQ 260
            +    +     L QE+  L      +    ++L T LF + GL L     T+   +T  
Sbjct: 504 GMQTENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTVLFEDMGLPLEYTKKTKTGYSTAV 562

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL     + P   ++   R   S+     +  L EA+ +DG++         ++TGR S
Sbjct: 563 DVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQTGRLS 620

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379
                 QN+P                                 +R   +       L+ +
Sbjct: 621 SVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADSVLLSS 655

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438
           D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K +   
Sbjct: 656 DYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNF- 714

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    A+                                  
Sbjct: 715 -------------GVVYGISDFGLAN------------------------------NLGI 731

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
              A +   + + ++   +      + +                                
Sbjct: 732 SRKAAKDYIQTYFERFPGIKNYMETIVREARD--------------------------KG 765

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            +     R     D+ +             R            +Q  + DIL   M+N  
Sbjct: 766 YVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVAMINLD 816

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 817 RALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058]
          Length = 880

 Score =  283 bits (724), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 98/660 (14%), Positives = 186/660 (28%), Gaps = 149/660 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +               ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNG--LPSALKAVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           +++P        +          + L  +        L +     GK       + E   
Sbjct: 388 IELPAAS-FDARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF 446

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E      E              +L+ L   EQ L ++   +   G  V+
Sbjct: 447 EHLARKIQVLLETEEPMQEQ--------LRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVE 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    +     L QE+  L      +    ++L T LF + GL L     T+  
Sbjct: 499 RETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKKTKTG 557

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     +     ++   R   S+     +  L EA+ +DG++         ++
Sbjct: 558 YSTAVDVLERLAPIASIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +      
Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADS 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433
            L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K
Sbjct: 651 VLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAK 710

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    A+                             
Sbjct: 711 AVNF--------------GVVYGISDFGLAN----------------------------- 727

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                   A +   + + ++   +      + +                           
Sbjct: 728 -NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARD----------------------- 763

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 764 ---KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVA 811

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           M+N  +A         ++L VHDEIV E P+ +      ++   M +    A  +PL A+
Sbjct: 812 MINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKETMEAAIELA--VPLVAD 869


>gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314]
 gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314]
          Length = 904

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 92/658 (13%), Positives = 189/658 (28%), Gaps = 137/658 (20%)

Query: 33  FAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            A    D    + D     P   + L   L +     + H +     V          + 
Sbjct: 362 IAIVDTDRRAVVADLADITPEAEKALAGWLADEASPKLLHGAK---AVFHMLAGRGFELR 418

Query: 92  RW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + A           + +          +                L   +  + 
Sbjct: 419 GIEHDTAIAAYLLRPGQRTYELADVY--------QRHLQRQLNPSNNGSNQLTLLDAGDS 470

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLN 208
           +          +    +T ++ +       ++ E+    +   +   G  VDVA      
Sbjct: 471 QVLVDEAVAILELAGELTSQLQEINGFELYRDLEIPLLSILARMEATGIAVDVATLEEQL 530

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
           +    + T+ ++    L      +    ++L+T LF   G+     T+   +T    + +
Sbjct: 531 ETFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAAEIEA 590

Query: 266 N--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
              K   P    +  +R    +     L  L+ ++ SDGR+  T     A  TGR S   
Sbjct: 591 LAAKNPHPFLDHLLAHRQY-QKMKTT-LEGLIRSVGSDGRIHTTFNQTVA-STGRLSSTD 647

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382
              QN+P  + +  +                         +RS  +  EG   L+ AD +
Sbjct: 648 PNLQNIPVRTEAGRK-------------------------IRSGFVVGEGYETLLTADYS 682

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RV+A ++ +   ++A+  GEDL+    ++ F+V    VT + R   K M   L   
Sbjct: 683 QIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFDVPIDGVTPELRRRVKAMSYGLV-- 740

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        GL+    +                                       
Sbjct: 741 ------------YGLSAFGLSQQ------------------------------LGIPAGE 758

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            + + +++ ++   V     E+ +   +                          +     
Sbjct: 759 AKTIMESYFERFGGVQRYLAEVVEQARK--------------------------SGYTET 792

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             GR     ++ ++            R            +Q  + DI+   M+   +   
Sbjct: 793 LFGRRRYLPELNSDN---RVARENAERAALNAP------IQGTAADIIKVAMIRVDRELR 843

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE+V E    +      +L   M +  +    +PL+      + +
Sbjct: 844 ATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNAIT--LRVPLEVSAGSGRDW 899


>gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
 gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734]
          Length = 859

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 103/651 (15%), Positives = 185/651 (28%), Gaps = 156/651 (23%)

Query: 42  VELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
             + D        +  L E L N   T   H+S      L     L +       T + A
Sbjct: 341 AIVQDLADVDPKDEKVLAEWLANPQATKWLHDSKQTYHTL-QDQGLKLDGVE-HDTSLAA 398

Query: 101 RSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD--RNKPNHREAWR 155
                      L  V +           G EL       E  + + +  R      EA  
Sbjct: 399 YLLRPDVRTLGLADVVQRH--------VGHELSENATGPERAQAVAELVRALTPEIEAAG 450

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
               Y   D+ V   +                +   +   G  VD A    L+       
Sbjct: 451 QAELY--FDLEVPLAL----------------ILAAMEHAGIAVDDAALQELSDDYGARL 492

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL--T 270
            +       L      +    ++L+  LF    L     T+   +T    L         
Sbjct: 493 NEEIAAARELAGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNH 552

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    +  +R    +     ++ L+EA+  DGR+  T    GA+ TGR S      QN+P
Sbjct: 553 PFLGHLMAHR-EYQKMKST-IDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIP 609

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVL 389
             + +  +                         +R+     EG   L+ AD + IE RV+
Sbjct: 610 VRTDAGRK-------------------------IRAAFTVGEGYETLLTADYSQIEMRVM 644

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++ +   ++A+ +GEDL+    +R F+V   +VT + R   K +   L          
Sbjct: 645 AHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLV--------- 695

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                 GL+    +  +K                                    +R+   
Sbjct: 696 -----YGLSAFGLSQQLKI------------------------------SAGEAKRIMDN 720

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           + ++   V    + + +  ++T                                 GR   
Sbjct: 721 YFERFGGVKRYLDHVVEVAKET--------------------------GYTETLYGRRRY 754

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYD 623
             ++ ++            R            +Q  + DI+   M+   +          
Sbjct: 755 LPELNSSN---RVARENAERAALNAP------IQGTAADIIKLAMLRVDREITRQQLASR 805

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           ++L VHDE+V E    +    + L    M +       +PL         +
Sbjct: 806 VLLQVHDELVVEVAPGELEQITELVEREMDAAAQ--LRVPLDVSAGTGDSW 854


>gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353]
          Length = 880

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 95/655 (14%), Positives = 186/655 (28%), Gaps = 139/655 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            ++  A+                ++ Q L +   +           ++     VL + + 
Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQDFLSKTALKT-----YDLKRAKVLLSHYG 387

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +++P        +             +    +L  Q +    + +  + KG         
Sbjct: 388 IELPAAA-FDARLAKYLL-STVEDNELATIARLYGQTILPTDDEV--YGKGAKRALPDQE 443

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H           +  +        +L+ L   EQ L ++   +   G  V+     
Sbjct: 444 QLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQ 503

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL--ETGLHLEDLTE---TTCQ 260
            +    +     L QE+ +L      +    ++L T LF      L     T+   +T  
Sbjct: 504 GMQAENEKTLESLTQEIYNLAGQ-EFNINSPKQLGTILFEDMRLPLEYTKKTKTGYSTAV 562

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL     + P   ++   R   S+     +  L EA+ +DG++         ++TGR S
Sbjct: 563 DVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD-LTQTGRLS 620

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVA 379
                 QN+P                                 +R   +       L+ +
Sbjct: 621 SVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWADSVLLSS 655

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELA 438
           D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R   K +   
Sbjct: 656 DYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIERAEDVTPNDRRNAKAVNF- 714

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++    A+                                  
Sbjct: 715 -------------GVVYGISDFGLAN------------------------------NLGI 731

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
              A +   + + ++   +      + +                                
Sbjct: 732 SRKAAKDYIETYFERFPGIKNYMETIVREARD--------------------------KG 765

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            +     R     D+ +             R            +Q  + DIL   M+N  
Sbjct: 766 YVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADILKVAMINLD 816

Query: 619 KA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           +A         ++L VHDEIV E P+ +      L    M +    A  +PL A+
Sbjct: 817 RALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869


>gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150]
          Length = 880

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 97/664 (14%), Positives = 186/664 (28%), Gaps = 145/664 (21%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++             + D            ++ Q L +               ++   
Sbjct: 326 FEILGDNYHKEEIVGLAWGDSRQIYVSTS--DLLQQPLFQEFLTKTALKT-----YDLKR 378

Query: 79  --VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
             VL + + +++P        +             +    +L  Q +    + +  + KG
Sbjct: 379 AKVLLSHYGIELPAAA-FDARLAKYLL-STVEDNELATIARLYGQTILPTDDEV--YGKG 434

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                        H           +  +        +L+ L   EQ L ++   +   G
Sbjct: 435 AKRALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAG 494

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDL 254
             V+      +    +     L QE+  L      +    ++L T LF + GL L     
Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQ-EFNINSPKQLGTILFEDMGLPLEYTKK 553

Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+   +T   VL     + P   ++   R   S+     +  L EA+ +DG++       
Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQ-ISKLQSTYIIGLQEAIAADGKIHTRYVQD 612

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             ++TGR S      QN+P                                 +R   +  
Sbjct: 613 -LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPE 646

Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQR 429
                L+ +D + IE RVLA ++ ++  + AF+ GED++  T  R F +     VT + R
Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +                    G++    A+                         
Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLAN------------------------- 727

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                       A +   + + ++   +      + +                       
Sbjct: 728 -----NLGISRKAAKDYIETYFERFPGIKNYMETIVREARD------------------- 763

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                     +     R     D+ +             R            +Q  + DI
Sbjct: 764 -------KGYVETIYHRRRSLPDINSRNF---NIRNFAERTAINSP------IQGSAADI 807

Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           L   M+N  +A         ++L VHDEIV E P  +      L    M +    A  +P
Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAAIKLA--VP 865

Query: 663 LKAE 666
           L A+
Sbjct: 866 LVAD 869


>gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1]
 gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1]
          Length = 655

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 174/705 (24%), Positives = 282/705 (40%), Gaps = 85/705 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLK 58
             LF+DFET S  DLT+ G+ +Y +D     + F F        +LW+      +P+ + 
Sbjct: 4   RLLFLDFETSSHTDLTEHGLGRYLDDPSTRAYCFTFRLPGMSTADLWEV--GQPVPKQII 61

Query: 59  EALENTDVTIVAHNSYFER----TVLKACFNL----DIPIHRWICTLVLARSNGLPSALK 110
             L       VAHN+ F+     TVL+         ++ I +  C+   AR NGLP +L 
Sbjct: 62  GHLN--GSPFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLA 119

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
              EAL L  QK  EG + +             D    +H E +    +Y   D      
Sbjct: 120 GACEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFTRTYKYALIDTDAMVG 173

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +++   PL ++EQ  + +D  IN RG  VDV  A  +  +      +LD E+  LT G +
Sbjct: 174 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGI 233

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   + K+K +     G  ++D    T +++ ++   L     Q+   R+ ASR+   K
Sbjct: 234 LAVTEVAKIKEYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--K 289

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL----PRPSRSHEELDQIITHL 346
            +  +   +  GRL+    + GA      +      Q L    PRP +   + + I+   
Sbjct: 290 KSAAILRAHVGGRLQHHTIYHGALSGRSTARGAGGAQTLNTARPRPGKKTADCEAILDAC 349

Query: 347 PTSITSD------PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                +          L  ++D  R    A   G  LV ADL+GIEAR+  W+A +  KL
Sbjct: 350 LRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKL 409

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AFE G D Y       +++    VTKDQR +GKV +LALG+ GG  AF  MA+  G++L
Sbjct: 410 EAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKVADLALGFGGGDGAFASMAANYGVHL 469

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                         +   WR        
Sbjct: 470 PPEQVS---------------------------------------EIVYNWRAGRPAFER 490

Query: 520 LWNELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG--- 574
            W+    +    ++    + ++   R     +   +D   L + LPSGR++ Y +     
Sbjct: 491 WWSLCEYSVLMALDQPGREVVMPVGRDFCSQITFVRDARALRMHLPSGRAISYHNARLHL 550

Query: 575 --NNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
                  +    +      T   K+   N  Q ++RD+    +++  +   +IV  V+DE
Sbjct: 551 EPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRVE-EIVHHVYDE 609

Query: 632 IVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            + E   +        L   M    +W  GLPL AEG+   R+RK
Sbjct: 610 ALLEVLAELAALRQKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654


>gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
 gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1]
          Length = 909

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/678 (15%), Positives = 200/678 (29%), Gaps = 156/678 (23%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKAC 83
           A D      A    D      D        +  L   L + D     H +      L   
Sbjct: 354 AFDSDATAVALVASDGDGRYIDTTRLDPEDEKALASWLADPDAPKALHEAK-----LAMH 408

Query: 84  FNLDIPIHRWI------CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFC 134
              D+    W        T + A          AL  +              K  +    
Sbjct: 409 ---DLQGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLSLRY---------LKRELRADN 456

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS------KEQELWYL 188
             +    L D +     +A +         V +   + + L  + S       E  +  +
Sbjct: 457 PEQQQLSLLDDSDAVDDQAVQTLLLRAGAVVDLADALDEELARIDSSALLGSMELPVQRV 516

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  VD+A+   L      +     +   ++    + +    ++L+  LF E  
Sbjct: 517 LAQLETVGIAVDLAMLSELQSEFAGQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELE 575

Query: 249 LHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           +     T+T   T    L S       P    +  +R  A+R  V  ++ L+ ++ +DGR
Sbjct: 576 MPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVAADGR 633

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +  T     A+ TGR S      QN+P  + +                            
Sbjct: 634 IHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEAGRR------------------------- 667

Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG   L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F+V   
Sbjct: 668 IRDGFVVGEGYADLMTADYSQIEMRIMAHLSKDAGLIEAFNTGEDLHSFVASRAFSVPLD 727

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT + R   K M   L                GL+    +  +K               
Sbjct: 728 EVTPELRRRVKAMSYGL--------------AYGLSAYGLSQQLKI-------------- 759

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                +   + +  +   V +   ++     +            
Sbjct: 760 ----------------STEEAKEQMEQYFARFGGVRDYLRDVVDQARK------------ 791

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                         +       GR     ++ ++            R            +
Sbjct: 792 --------------DGYTSTVFGRRRYLPELDSSN---RQVREAAERAALNAP------I 828

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           Q  + DI+   M+N  +A         ++L VHDE++ E  D +      L    M S  
Sbjct: 829 QGSAADIIKVAMINVDQAIKEAGLSSRMLLQVHDELLFEVADGERDALDALVREHMGSA- 887

Query: 656 SWAKGLPLKAEGYESKRY 673
            +   +PL+      + +
Sbjct: 888 -YRLDVPLEVSVGYGRSW 904


>gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 884

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/680 (13%), Positives = 185/680 (27%), Gaps = 163/680 (23%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++           F + +          D +   + K AL             ++   
Sbjct: 330 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 382

Query: 79  --VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
             VL +   +D+P      + +                   +   ++     L   +   
Sbjct: 383 SKVLLSHLGIDLP-APAFDSRLAKYLLS------------TVDDNELSTIARLYTEYVLD 429

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-------EIFKRLEPLS--SKEQELWY 187
                     K    +   L     +  V +         ++ +  +       EQ L  
Sbjct: 430 SDEAVYGKGAKRAVPDKAVLLSHLARKIVVLNHSEKAMLDKLTEHQQASLLFDMEQPLAN 489

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  V       + +       +L QE+  L      +    ++L   LF + 
Sbjct: 490 VLAKMEIAGISVKKETLQDMEKANQAVIDELTQEIYDLAGM-EFNINSPKQLGELLFDKM 548

Query: 248 GLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            L       T+   +T   VL     ++P   ++   R   ++     +  L + +  DG
Sbjct: 549 QLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQ-IAKLQSTYIVGLQDFILKDG 607

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           ++         ++TGR S      QN+P                                
Sbjct: 608 KIHTRYLQD-LTQTGRLSSVDPNLQNIPVRLEQGR------------------------- 641

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   +     + L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +  
Sbjct: 642 LIRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEK 701

Query: 422 -AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              VT + R   K +                    G++    A+                
Sbjct: 702 AEDVTPNDRRNAKAVNF--------------GIVYGISDYGLAN---------------- 731

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                                  ++  + + +++  + +    + +  +           
Sbjct: 732 --------------NLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKD---------- 767

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                              +     R     D+      +        R           
Sbjct: 768 ----------------KGYVETLFHRRRELPDINARNFNVRQ---FAERTAINSP----- 803

Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTS 653
            +Q  + DIL   M+N  KA         ++L VHDEI+ E P  +      L    M S
Sbjct: 804 -IQGSAADILKIAMINLDKALVDGRFKTKMLLQVHDEIILEVPKDELEAIEKLVKETMES 862

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                  +PL A+    + +
Sbjct: 863 AIE--LSVPLVADESAGQTW 880


>gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3]
 gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3]
 gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5]
 gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12]
          Length = 1032

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 142/441 (32%), Positives = 222/441 (50%), Gaps = 18/441 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L++D ET S  DL K G   YAE     +++  + FD+ PV++WD      MP+ L+
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            A+      ++++ +V  N   F+R V+K C+  ++ +   I T+++A  + LP +L ++
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAFRHALPGSLASL 120

Query: 113 GEALKLS--SQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +     K + GK LI RF K         R     H + W  F  Y K D+T  R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTAATHPKEWAEFIAYAKSDITSMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E++K++     S  E  + +LDQ INDRG+ VDVALA    + V   + +L +E +    
Sbjct: 181 EVYKKMPKWGNSEFEDRVLWLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+          + +  ++T   +L+  + L   A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILQELAPAH---RIHNAQKSTLNDLLAD-EDLPDDARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH-L 346
             K   L+   +SD R RG LQ+ GA RT RW+G  F PQNL R     +ELD+ I   L
Sbjct: 297 STKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALL 356

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G+K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPAQVTKD 427
           D+Y  T  + F + P  + K+
Sbjct: 417 DIYCVTAGKMFGMDPDDIKKE 437



 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 124/292 (42%), Gaps = 45/292 (15%)

Query: 429  RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ-- 486
              +    EL LGY+GG  AF   A   GL+L   A  +        W        W +  
Sbjct: 741  FLVAHNCELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQ 800

Query: 487  ----------ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG- 535
                      ++     I D  +   C+ +K+ WR+ H      W +L       + N  
Sbjct: 801  EAKRPPHPGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPG 860

Query: 536  --------------KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS--- 578
                          +AI   +  +      K     L + LPSGR L Y  +G + +   
Sbjct: 861  REFWAGAHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKET 920

Query: 579  ---------------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
                             N  TRQ T  YT+GGK  ENIVQA+ RD+LA  M+N    GY 
Sbjct: 921  DEDGRINTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYP 980

Query: 624  IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IVL+VHDE+VCETPDT ++  + L  LM + P WA G PL AEG E KRY K
Sbjct: 981  IVLSVHDELVCETPDTPDYTVAELEKLMCALPGWADGFPLVAEGAELKRYAK 1032


>gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
 gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100]
          Length = 863

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/608 (13%), Positives = 164/608 (26%), Gaps = 146/608 (24%)

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
           ++            P+  W  + + A                +  +  + +       + 
Sbjct: 389 YDLKSFWHKIGAKTPVAAW-DSQLAAYVLKAGDTSDFAKIYTRFMADVLPDLASPSQLYN 447

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                           +        Y + D                    L  +  ++  
Sbjct: 448 AQLNFATTLKSQLQTVQGE----KVYQELD------------------LPLARVLLSMER 485

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +D  L    ++ +  +  ++++++         +    ++L   LF + GL     
Sbjct: 486 LGVRIDKDLLAKQSEELAKDIAEIEKQIHEAAG-ESFNVGSPKQLGVILFEKLGLPAGKK 544

Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQF 310
           T+   +T + VL       P A  V       S+     ++ L   ++  D R+  +   
Sbjct: 545 TKTGYSTDEEVLLGL--EHPIAKLVLQ-WREMSKLKSTYVDALPTMIDPKDERVHTSFNQ 601

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              + TGR S      QN+P  +                              VR   IA
Sbjct: 602 ALTT-TGRLSSTQPNLQNIPIRTARG-------------------------QQVRKAFIA 635

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           +   KL+  D + IE R+LA ++ +    KAF    D++  T A  F V    VT + R 
Sbjct: 636 APRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATAAEVFGVPLKDVTAEHRR 695

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
                                                          A NF     +   
Sbjct: 696 SA--------------------------------------------KAVNFGIAYGQGAF 711

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
             A       T  + + + +  +   V E  +   +   +                    
Sbjct: 712 GLAENLGISRTEAKDIIERYFNRFKNVREYIDGTIKMAHE-------------------- 751

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                    +    GR     ++ +    L    +   R            +Q  + D++
Sbjct: 752 ------KGYVETLFGRRRYIDELQSKNMALK---KFGERAAINAP------IQGTASDLV 796

Query: 611 AEGMMNA-TKAGYDIVLTVHDEIVCETPDTDEFNASM----LYHLMTSNPSWAKGLPLKA 665
            + M+    K    ++L VHDE++ E     E N       L  +M +       +PLK 
Sbjct: 797 KKAMIEVFEKVPVRMLLQVHDELIFE---DFEENLQKHSPQLVSIMENVMK--LKVPLKV 851

Query: 666 EGYESKRY 673
                  +
Sbjct: 852 NYAIGNNW 859


>gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
 gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas]
          Length = 944

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/659 (13%), Positives = 186/659 (28%), Gaps = 146/659 (22%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
                D  +   +  + D  +   D  H     +++K  L    V  V     ++   L 
Sbjct: 416 YMEMADNVIDSVSLSYKDDILLYIDKDHVTDALELIKPVLGLNYVLKVI----YDVKTLL 471

Query: 82  ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
                D+ I  +   ++++                          +E+I    K +    
Sbjct: 472 KVIP-DVEIVAFDDIMIMSYILSPSVH--------------DHSLQEIINYNVKQDVVNV 516

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
                     +  +         V     I++R+E           +  ++   G  +D+
Sbjct: 517 KTAITLLLLHKLLKKNLF-----VNQLYTIYERVEKPL------IRVLDSMEKVGMLIDI 565

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---- 257
            +  TL+     + + L+ E+  L      +    ++L T LF + G+       +    
Sbjct: 566 DILKTLSSTFSEKVSVLENEIYRLAGT-EFNIASSKQLGTVLFDKMGIKKSKKLSSGSYS 624

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL+       +           ++      + L + +NS+     T   + ++ TG
Sbjct: 625 TDAEVLNDLVFNEIEIADKILQWRHFTKLKSTYTDALGKQINSNSGRIHTFYSMISTATG 684

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P  S                              +R   +A +G KLV
Sbjct: 685 RLSSSNPNLQNIPIRSEEGNA-------------------------IRRAFVARKGYKLV 719

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A +AG Q    AF   +D++  T  + F      + K+ R   K +  
Sbjct: 720 SADYSQIELRIMAHIAGVQAFKDAFFLDQDIHSITAEQIFCT--QSLDKNLRRKAKSIN- 776

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++                                  A +  
Sbjct: 777 -------------FGIIYGMS------------------------------AFGLAKQLG 793

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
              +        + + +  +    N +    +                            
Sbjct: 794 ISRSEANAYIDNYFKSYPEIQSYMNNIKIYAKT--------------------------Y 827

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR    RD+ ++ +     +    R             Q  S DI+   M++ 
Sbjct: 828 GYTRTIFGRKCFIRDINSSNAAARNFS---ERAAINAPL------QGTSADIIKMSMIHL 878

Query: 618 TKAGYD--IVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   ++L VHDE++ E  +        ++  +M         +PLK +      +
Sbjct: 879 FDKITHGSLILQVHDELLFEILEEYVDYAVEVITKVMEGIVK--LSVPLKVDIRIGTNW 935


>gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC]
 gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC]
          Length = 869

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/656 (15%), Positives = 192/656 (29%), Gaps = 129/656 (19%)

Query: 30  VILFAFGFDDHPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
           ++  A   DD  V   D  H    +   L+      D T   +N   +   LK    + +
Sbjct: 328 LMGVALASDD-DVYYVDIEHALDDVLTPLQYFFRREDTTFYGYNIKRDNHALKNA-GIHV 385

Query: 89  PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                    +        +  + + +     L S     GKE                + 
Sbjct: 386 HNIAL-DLALAEHLINGGAKISYQTLLMDHGLVSSAGRYGKEWGQLSLPIAKSPANPAQY 444

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                       +          +I    +   + E  L  +  TI   G  +DV     
Sbjct: 445 FGGFVSHLPKIKKSLLE----ELKIKGVEDLFFNMEMPLEKVLFTIERNGMPLDVEDLQE 500

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           L +I+  E   L  ++ +L      + +  ++L   L+ + GL   D   +T   VL + 
Sbjct: 501 LERILSEELAMLTDDIYTLAGAP-FNIKSPKQLSEVLYNKLGLKPIDKARSTKAEVLEAL 559

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFP 325
                   ++   R    +     +  L   ++    R+  T   +G + TGR +     
Sbjct: 560 SGEHEIIEKILAFR-AVEKLLSTYVKALPRQVDPSTSRIHPTFNQMG-TVTGRLACQDPN 617

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLVVADLAGI 384
            QN+P  S                              +R       +    + AD + I
Sbjct: 618 LQNIPIRSERGR-------------------------LLRKAFCNTHQNNYFLSADYSQI 652

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R LA ++ ++    AFE+ ED++  T ++ F+V   +VTK QR   K +         
Sbjct: 653 ELRFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQAKTVN-------- 704

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G                              +     +       +  +
Sbjct: 705 ------FGIIYG------------------------------QQAYGLSKILKISVSEAQ 728

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           ++  A+  ++  V+   NE      +                          NL +    
Sbjct: 729 KLIDAYFDRYPEVARFINETVSQACE--------------------------NLRVKTLL 762

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618
           GR          R   N T    +R  + G       +Q  + +++   M+         
Sbjct: 763 GR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLSDALEKR 812

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           K    ++L +HDE++ E P+ ++     L   +M S       +PL       K +
Sbjct: 813 KLKSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAM--ILSVPLVVNILIGKNW 866


>gi|323339592|ref|ZP_08079866.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
 gi|323092987|gb|EFZ35585.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644]
          Length = 885

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/633 (14%), Positives = 184/633 (29%), Gaps = 130/633 (20%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L+E LEN + T+   +       LK    ++         L+++           +G+
Sbjct: 365 EPLREFLENKNKTLDVFDGKKTYVSLKR-LGIEAESID-FDLLLVSYLLNNTDNSNDLGQ 422

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                 Q     K     + KG   E   D     H  +      + K    + +++   
Sbjct: 423 LC--QKQGYFGVKSDDEVYGKGAKKEICADETFFEHLRSKVFAIAFLKQ--KLMQKLKDN 478

Query: 175 LEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            +     E E     +   +   G   D     T+      + + L+  +         +
Sbjct: 479 SQDHLYFEIERPLSIVLAKMEIAGIKADKETLETMGSRFKEKISDLESLIYQEAG-ETFN 537

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L T LF + GL     T+   +T   VL   +        V   R   ++    
Sbjct: 538 INSPKQLGTILFDKLGLPGAKKTKTGYSTAVGVLEKLRG-NDIVDNVLLYRQ-FAKLKST 595

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            ++ L++ M+ D ++         + TGR S      QN+P       +           
Sbjct: 596 YIDGLIKVMDQDEKVHTR-YTQTLTTTGRLSSVEPNLQNIPVRLEEGRK----------- 643

Query: 350 ITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +R   I S +G ++  +D + IE RVLA ++ ++   KAF+   D+
Sbjct: 644 --------------IRQAFIPSHQGWEIFSSDYSQIELRVLAHISKDENMQKAFKDDFDI 689

Query: 409 YVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +  T  + F ++ P +VT + R   K +                    G++    A  + 
Sbjct: 690 HANTAMKIFGLSSPDEVTPNMRRQAKAVNF--------------GIVYGISDFGLAQSI- 734

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                               +   + + +    V     E+ + 
Sbjct: 735 -----------------------------GCRRDQAKTFMETYFESFPGVKRYMTEIVEL 765

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                                           +     R      + +            
Sbjct: 766 ARN--------------------------QGYVETLFKRRRYLEGIRSKNF---NQRSFA 796

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDE 641
            R            +Q  + DI+   M+         +    ++L VHDE++ E P+ + 
Sbjct: 797 ERTAMNTP------IQGSAADIIKVAMIKMQETLEKEELKARMLLQVHDELIFEAPEEEI 850

Query: 642 FNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                L   +M S       +PLK E    K +
Sbjct: 851 PVLEKLVPSVMDSAVK--LDVPLKVESGHGKTW 881


>gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi]
 gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi]
          Length = 1085

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/714 (11%), Positives = 181/714 (25%), Gaps = 181/714 (25%)

Query: 32   LFAFGFDDHPVELWDCVHDP--------------VMPQVLK-EALENTDVTIVAHNSYFE 76
              +F                               +   ++ E +EN ++  + HN  + 
Sbjct: 477  GISFCISPGQAYYLPFFKGGKVEFLDSVNILKESPILSKVRTEIMENPNILKIGHNIKYH 536

Query: 77   RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA---RF 133
              +L       + +  +   +V++                     ++ E   L+      
Sbjct: 537  IKMLANY---GVTVKNFDDIMVMSYVLN--------CGKHGHEMDEIVENVLLLDPKEHI 585

Query: 134  CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KE 182
               +    +  +              +      +T++ +  L+                E
Sbjct: 586  IPEKEVLGIGKKKVTLMEADIVSVVHFACQHADLTKQAYDVLKSALDKSPKLTQFYEGIE 645

Query: 183  QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG-------------- 228
            + L      I  +G  +D      +      +   +  ++                    
Sbjct: 646  KPLVETLAGIEMKGVFMDEPALVKMENEYREKIKAIGNKIREDAGYPTIDEDIEIPTSEE 705

Query: 229  -----------------LVSSSRCLEKLKTWLFLETGLHLEDLTETT-------CQRVLS 264
                                +     +L   +F + G+    L + T          VL 
Sbjct: 706  EIESMIIEMDEMKQEASEEFNINSNRQLGQVIFEKLGI-GTKLRKKTKVGDYILNAEVLQ 764

Query: 265  SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                      +        ++     ++ L + +N   +   T      + TGR S  + 
Sbjct: 765  KLAAEGHSIAKHILEYRALTKLYSTYISGLRQHINPYTKRIHTTFQNALTVTGRLSSVMP 824

Query: 325  PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLVVADLAG 383
              QN+P  +   +                          +R C I  S+   ++  D + 
Sbjct: 825  NIQNIPVRTAEGK-------------------------QIRRCFISPSDDYVIMKVDYSQ 859

Query: 384  IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            +E R+LA +A       AF+  +D++  T ++ FNV   QV K  R   K +   + Y  
Sbjct: 860  VELRILAHIANIPVLKNAFKENKDVHAITASQVFNVPLDQVDKSTRNKAKAINFGIIYGM 919

Query: 444  GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                  +   +  + ++T A         +++   +N+     E   +H   +      C
Sbjct: 920  S-----EFGLSKRIGVDTQAAKSFIEQYFKQYPGIKNYMTKTIEFCRKHGYVNTLFNRRC 974

Query: 504  ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                         + +               G      +R  +         +   + + 
Sbjct: 975  WI---------PGIED------------QGFGGKSSFGERTSINTPIQGTSADITKIAM- 1012

Query: 564  SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
                          S       +  R           I+Q                    
Sbjct: 1013 -------------NSLHKAFQEKGLRTRM--------IIQ-------------------- 1031

Query: 624  IVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSW---AKGLPLKAEGYESKRY 673
                VHDEIV E P  +      ++  LM     +      +PL  E     ++
Sbjct: 1032 ----VHDEIVFEVPKDEVETVEPIIKELMEGAAFFGGTNFTVPLTVEATVDSKW 1081


>gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084]
 gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084]
          Length = 922

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/610 (14%), Positives = 155/610 (25%), Gaps = 159/610 (26%)

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           D+   R     V                                       +   L  R 
Sbjct: 445 DVDHRRVFDVAVAGYLLDSD---------------------------AASFSVADLVSRE 477

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRG 196
                            D      +   L     ++            L  +   +   G
Sbjct: 478 MDMSLPEPTDELPQAALDAVGAWALCPLLARRLEEDGSKGLFCDLEMPLLRVLLQMERTG 537

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----- 251
              D       ++ +  E   +   +++       +    ++L   LF   GL       
Sbjct: 538 LHADAGRLAEQSRELGSEIDCMVATIKAD-ADEDFNMDSPQQLSHVLFDVWGLPTFGLKR 596

Query: 252 -EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            +    +T  + L    +   +   + + R   ++     L+ L   +  DGR+  TL  
Sbjct: 597 TKKGFYSTNAKTLEDLAQQDGRVRMILDYR-ERAKIKSTYLDALPADIRRDGRIHTTLNQ 655

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             A+ TGR S      QN+P  S                          +   VR+    
Sbjct: 656 TVAA-TGRLSSSAPNLQNIPTRSE-------------------------LGHRVRTAFTV 689

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            EG   +  D + IE R+LA ++ +   + AF +G D +  T AR F V   +VT   R+
Sbjct: 690 PEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGADFHAATAARVFGVPVEEVTPQLRS 749

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   +                                               +   
Sbjct: 750 RAKAVNFGIV--------------------------------------------YGQQAF 765

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
             A          + +   + + +  V      L Q+ +   + G A+            
Sbjct: 766 GLASSLRIGRAEAQEMIDRYFEAYPGVRAY---LDQSVDFARKRGYAVTMY--------- 813

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                         GR    RD+               R            +Q  + DI+
Sbjct: 814 --------------GRKRHIRDINARNF---QLRSFAERTAMNHP------MQGTAADII 850

Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663
              M+   +          +VL +HDE+  E P  +    S L    M         +PL
Sbjct: 851 KLAMVRVAERLRQEGLRSKLVLQIHDELDFEVPKDEIEVLSKLVKETMEGVCE--LRVPL 908

Query: 664 KAEGYESKRY 673
            A+      +
Sbjct: 909 LADVSYGANW 918


>gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
 gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353]
          Length = 878

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/643 (12%), Positives = 176/643 (27%), Gaps = 141/643 (21%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH--RWICTLVLARSNGLPS 107
           +  + + + E L+     IV      +   L   F+ ++  +  +     + A       
Sbjct: 354 EDYLKEKITELLKEGTELIVL-----DYKALL-HFSEEVREYESQIQDVGIQAYLLNPLQ 407

Query: 108 A---LKAVGEALK---LSSQKMEEGKE-LIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
           +    + +        L S+K   GK+ L   F + E                       
Sbjct: 408 SAYDYEDIARDYLRQMLPSRKEVCGKKALEEVFSQEEEKTVQMAAYLSYVPFHAYPLVLE 467

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              +  +  E++       + E+        +   G  V+          +     +L++
Sbjct: 468 KLREAEME-ELY------LTIERPTVATLYDMEKYGITVEKDALKEYGDQLVGRIEELEK 520

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
            +         +    ++L   LF +  +     T+   +T   +L       P    + 
Sbjct: 521 NIYEQAG-KTFNINSPKQLGVILFEDLKMPFAKKTKTGYSTSADILEKLAPDYPIVSNIL 579

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             R   ++      + L   +  DG++         + TGR S      QN+P       
Sbjct: 580 EYRQ-LTKLKSTYADGLAAFIQEDGKIHSIFHQKV-TATGRLSSSDPNLQNIPIRMPLGR 637

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                     +R   +   G   V AD + IE RVLA MAG++ 
Sbjct: 638 A-------------------------IRKVFVPDSGYVFVSADYSQIELRVLAHMAGDEH 672

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + A+  GED++  T ++ F V   +VT   R   K +                    G+
Sbjct: 673 LIDAYRHGEDIHRMTASQVFGVPFEEVTPLLRRSAKAVNF--------------GIVYGI 718

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +                                  + +              +   +  +
Sbjct: 719 S------------------------------AFGLSQDLKISRKEASEYIDKYFATYPGI 748

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
               +      ++                             +    GR     ++ ++ 
Sbjct: 749 KTYLDGNVAFAKK--------------------------EGYVKTLYGRVRPIPELSSSN 782

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDE 631
               +      R          + +Q  + DI+   M+         K    ++L +HDE
Sbjct: 783 FMQRSF---GERVAM------NSSIQGTAADIIKIAMIRVSKRLQEEKLASRLILQIHDE 833

Query: 632 IVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++ ET + +      +    M         +PL  +  E K +
Sbjct: 834 LLIETKEDEVEEVRKILKEEMMGAAD--LKVPLSIDIEEGKTW 874


>gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104]
 gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104]
          Length = 913

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/673 (15%), Positives = 195/673 (28%), Gaps = 146/673 (21%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKAC 83
           A D      A    D      D        +  L   L +       H +      L   
Sbjct: 358 AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK-----LAMH 412

Query: 84  FNLDIPIHRWI------CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARF 133
              D+    W        T + A          +L  +    L+   +     ++ ++  
Sbjct: 413 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENPQQQQLSLL 469

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
              +  +    +       A     +    D  + R     L         +  +   + 
Sbjct: 470 DDTDGTDDQAVQTLILRAVAVLDLAD--ALDEELARINSTSLLSGME--LPVQRVLAGME 525

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  VD+ L   L      +     +   ++    + +    ++L+  LF E  +    
Sbjct: 526 KAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELQMPKTK 584

Query: 254 LTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            T+T   T    L S       P    +  +R  A+R  V  ++ L+ ++ SDGR+  T 
Sbjct: 585 RTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVASDGRIHTTF 642

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  + +                            +R   
Sbjct: 643 NQTIAA-TGRLSSTEPNLQNIPIRTEAGRR-------------------------IRDAF 676

Query: 369 IASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  +G  +L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F V   +VT +
Sbjct: 677 VVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGE 736

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K M   L                GL+    +  +K                    
Sbjct: 737 LRRRVKAMSYGL--------------AYGLSAYGLSQQLKI------------------- 763

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                           +    A+  +   V +  + + +   +                 
Sbjct: 764 -----------STEEAKEQMDAYFARFGGVRDYLHAVVEQARK----------------- 795

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                    +       GR     ++ ++            R            +Q  + 
Sbjct: 796 ---------DGYTSTVLGRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAA 837

Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKG 660
           DI+   M+   KA         I+L VHDE++ E    +      L    M     +   
Sbjct: 838 DIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMGGA--YPLD 895

Query: 661 LPLKAEGYESKRY 673
           +PL+      + +
Sbjct: 896 VPLEVSVGYGRSW 908


>gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 879

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/674 (13%), Positives = 179/674 (26%), Gaps = 134/674 (19%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE 76
            + GI  Y E+  +   A   +   V L+ C     + Q       +     + + +  E
Sbjct: 319 KEAGISIYKENDAMW-VALNTEGEEVYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME 377

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARF 133
                +   +           + A              +    K     +   KELI + 
Sbjct: 378 VKEHLSHLTIHETTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMM--LPSRKELIDK- 434

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCK----GDVTVTREIFKRLEPLSSKEQELWYLD 189
            K          +       +  +          D     E+          E    +  
Sbjct: 435 -KHPMVTDGVLSDAGKKIMGYEAYISREAIQPLSDKLTELEMMDLYR---EIEIPTMFAL 490

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +  RG  VD          +     +L + +         +    ++L   LF    L
Sbjct: 491 HDMEVRGIHVDSKALKEYGDQLVGRIEELQESIYKEAG-EEFNINSPKQLGVVLFEHMKL 549

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+   +T   VL   + L P    V   R   ++      + L   +  D R+ G
Sbjct: 550 EGAKKTKTGYSTSVEVLEKIEHLYPIISMVLEYRQ-LTKLKSTYADGLANFIQDDQRIHG 608

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  + TGR S      QN+P                                 +R 
Sbjct: 609 KFNQ-TITATGRISSTEPNLQNIPIRMELGRA-------------------------IRK 642

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
             +  +G   + AD + IE RVLA ++ ++  + A+E  +D++  T +  F +   +VT 
Sbjct: 643 VFLPEDGYVFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASEVFGIPMDEVTS 702

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
            QR   K +                    GL+                            
Sbjct: 703 TQRRDAKAVNF--------------GIIYGLS---------------------------- 720

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                 + +        +     +   + RV E    L    E+   +G           
Sbjct: 721 --AFGLSQDLKISRKQAQEYIDRYFAMYPRVKEF---LDGEVEKGKTDGYVKTMFN---- 771

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                              R     ++ ++            R            +Q  +
Sbjct: 772 -------------------RIRPIPELKSSNFMQRNF---GERVAMNSP------IQGTA 803

Query: 607 RDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659
            DI+   M+         +    ++L +HDE++ ET   +      +  + M +  S   
Sbjct: 804 ADIIKIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNAVS--L 861

Query: 660 GLPLKAEGYESKRY 673
            +PL  +  +   +
Sbjct: 862 RVPLNIDIEQGASW 875


>gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
 gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098]
          Length = 919

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 109/694 (15%), Positives = 191/694 (27%), Gaps = 165/694 (23%)

Query: 12  SPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL--WDCVHDPVM--------PQVLKEAL 61
           S   L          D  V L  +   D        +      +           L   L
Sbjct: 357 SAPALDDVSALPDCGDARVALI-WAHGDREAPYLAVEGADGGSLGEWQWTGPVAELARWL 415

Query: 62  ENTDVTIVAHNSYFERT-------VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
                 + A     +           +            I   V A              
Sbjct: 416 APARTLVTA-----DLKGLLTSAPCWQFLAG---RAADCIDLGVAAYLLNPEEN------ 461

Query: 115 ALKLSSQKMEEGKELIARF-CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                      G  L      +GET            +   +   +          E+F+
Sbjct: 462 DYGWPRLSARWGAVLRHELESRGETASGPARLGLAMAQLFEQRMEK------DGLLELFR 515

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           RLE        L  +   +   G  +D A        V  +  +L   +  L      + 
Sbjct: 516 RLE------MPLLPVLAGMEQSGVAIDAAAFRAFLDDVQGQLDQLTAHVYELAGTQ-FNI 568

Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           R  ++L   LF   GL     T+    +T Q+ L       P    +   R +  +    
Sbjct: 569 RSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKLAGQHPVVDSILQYR-KLEKMRST 627

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            L+ L   ++  GR+  T     A+ TGR S      QN+P                   
Sbjct: 628 YLDPLPRLVDPQGRIHTTFNQ-KATATGRLSSSNPNLQNIPVRGP--------------- 671

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                     +   +RSC IA  G+ LV AD + +E RVLA ++ +   L+AF  GED++
Sbjct: 672 ----------LGKRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEAFRNGEDIH 721

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T A  +++ P QV+ DQR   K +                    G+            
Sbjct: 722 ARTAALVYDLPPDQVSPDQRRNAKTINF--------------GLIYGMG----------- 756

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                + A E     T  +     + ++   + E +  +  +  
Sbjct: 757 -------------------AQKLAQELKISTTQAKDFIARYFERLQGLKEFYEGVEASAR 797

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +                          +  +    GR  +  D+ +         R+   
Sbjct: 798 K--------------------------HGFVTTLGGRRRLLPDINSASGQAAALARRQ-- 829

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFN 643
                      ++Q  + DI+   M+         +    ++L VHDE++ E P      
Sbjct: 830 -------AINTVIQGSAADIIKLAMLAVARDERLRELDARLLLQVHDELLLEVPADAAEE 882

Query: 644 A-SMLYHLMTS--NPSWAKGLPLKAEGYESKRYR 674
           A +++  LM           +PL  +      + 
Sbjct: 883 AGALVARLMQDVCPAGKELSVPLLVDWGTGHDWG 916


>gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328]
 gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328]
          Length = 875

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 200/668 (29%), Gaps = 153/668 (22%)

Query: 35  FGFDDHPVEL------WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FN 85
           +  D+ PV             +  + +  KE  E+ D+        F+          + 
Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVELVESFKEEFESKDINK----LSFDIKPCIYHLMRYG 383

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYD 144
           +DI  + +   +++           ++               ++I    K  E       
Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSM----------ERSDPKVIGYDFKPLEDITGKGK 432

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQTINDR 195
             K       +    Y    +  T ++++++  +  ++           L  +   +   
Sbjct: 433 SKKTILESDEKEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFT 492

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G CV       + ++ + E   +++ +E L    + +    ++L   LF +  L +    
Sbjct: 493 GVCVKKETLVEMGELFEDEIKSIEKSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKKN 551

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T Q VL +          +   R   ++     ++ +V+ +  DG++  T Q   
Sbjct: 552 KTGPSTDQEVLEALSGRHEIIDYILRYR-TITKLKTTYIDGMVDLIKKDGKIHTTFQQTI 610

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
           A +TGR S      QN+P  +                              +R   + SE
Sbjct: 611 A-QTGRISSTNPNLQNIPIRTEEGR-------------------------LIRKAFVPSE 644

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  L+ AD + IE RVLA +A ++  L AF+ G D++  T +  F V   +VT  QR+  
Sbjct: 645 GNMLLDADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNA 704

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   +                G+   + +  +                          
Sbjct: 705 KAVNFGIV--------------YGIGDYSLSKDLHI------------------------ 726

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                      +   + +   +  + +   ++    ++                      
Sbjct: 727 ------TRKEAKEYIENYLDTYKGIKQYMEDIVAIGKE---------------------- 758

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                  +     R     ++ +             R            +Q  + DI+  
Sbjct: 759 ----KGYVETIMNRRRYIPELKSKN---YNVRSFGERVA------LNTPIQGSAADIIKV 805

Query: 613 GMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA 665
            M+         K    ++L VHDE++ + P  +      ++  +MT        + +  
Sbjct: 806 AMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDV 865

Query: 666 EGYESKRY 673
               +  +
Sbjct: 866 NS--ADNW 871


>gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
 gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405]
          Length = 640

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/715 (13%), Positives = 193/715 (26%), Gaps = 153/715 (21%)

Query: 5   FIDFETRSPIDL--TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--------VMP 54
             DFET SP D           A    +   +F   +         H           + 
Sbjct: 23  AFDFET-SPRDKWRNDKSAALDAHKADITGISFSVSEGTAIYVPLKHRSGRNAENQAAIW 81

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK   E+ DV  VAHN  FE   L     + +       T+  ++       LK+  E
Sbjct: 82  DYLKLLFESKDVIKVAHNLAFESMFL-YARGIVLQ-KPCYDTIAASQL-----TLKSKWE 134

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              L+   ++     + +    E       R              Y   D   T  ++  
Sbjct: 135 FRSLADSGLKTLAPALCKAEMTEFSTVTEGRFFDELNPQDEKTVRYACADSDYTLRLYHV 194

Query: 175 LEPLSSKEQELWYLDQT------------INDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                 +                      +   G  VD +           +   + +E+
Sbjct: 195 FNQWFDRFLPKHRTIVEEVESPTSVYVGIMKYNGILVDKSAMLKKQAEAAEKIVSIRKEI 254

Query: 223 ESLTYGLVSSSR-CLEKLKTWLFLETGLHLEDLTETT-----------CQRVLSSNKKLT 270
             +   +   +       K +LF++ GL +   T               +   ++N+   
Sbjct: 255 AGIIGNVEIGANASTSAFKKYLFVDLGLPVMKTTAKHQEAADDETMILLKEWCATNRPEL 314

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
            +  ++     +  +     ++  +  ++ D            + TGR++      QN P
Sbjct: 315 VRLFELVQEYRKWGKLKSTYIDGYLRFIDEDTGRIHPDLMPLGTETGRFASRNPNMQNCP 374

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           +                                VR  +IA  GK L+  D + IE RV A
Sbjct: 375 QKDND-------------------------PIGVRKFIIAPAGKVLLSLDFSQIELRVGA 409

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-------VTKDQRAIGKVMELALGYQG 443
           +   ++  L+ + TG D++  T +  + +   +         K++R I K     + Y  
Sbjct: 410 FYCRDKRMLETYRTGGDIHAQTTSVIYRIPFEEAADKNAPHYKERRTIAKNCNFGVFYGL 469

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                Q+                                                    C
Sbjct: 470 FPTGLQRTLK--------------------------------------FKAGINPTLAEC 491

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           E + +  +  +  +++  +E+ +     +                               
Sbjct: 492 ETIIQNLKSGYPGLAKWQDEVKKRA--AVSCYSETWL----------------------- 526

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----T 618
            GR      + ++     +   +               +Q  + DIL             
Sbjct: 527 -GRRRYLLGIRSSDWGKKSFAER---------CALNTPIQGTAADILKLACGRIISGLPE 576

Query: 619 KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
           +     +L +HDE+V E P+   +     +   M + P  A  +P+ AE    + 
Sbjct: 577 RLWLKPMLQIHDELVFELPEDKVDEAVVFIKECMETQPFPAFDVPIVAEASVGRN 631


>gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 919

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/673 (15%), Positives = 196/673 (29%), Gaps = 146/673 (21%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKAC 83
           A D      A    D      D        +  L   L +       H +      L   
Sbjct: 364 AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK-----LAMH 418

Query: 84  FNLDIPIHRWI------CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARF 133
              D+    W        T + A          +L  +    L+   +     ++ ++  
Sbjct: 419 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENPQQQQLSLL 475

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
              +  +    +       A     +    D  + R     L         +  +   + 
Sbjct: 476 DDTDGTDDQAVQTLILRAVAVLDLAD--ALDEELARINSTSLLSGME--LPVQRVLAGME 531

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
           + G  VD+ L   L      +     +   ++    + +    ++L+  LF E  +    
Sbjct: 532 NAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELQMPKTK 590

Query: 254 LTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            T+T   T    L S       P    +  +R  A+R  V  ++ L+ ++ SDGR+  T 
Sbjct: 591 RTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVASDGRIHTTF 648

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  + +                            +R   
Sbjct: 649 NQTIAA-TGRLSSTEPNLQNIPIRTEAGRR-------------------------IRDAF 682

Query: 369 IASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  +G  +L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F V   +VT +
Sbjct: 683 VVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGE 742

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K M   L                GL+    +  +K                    
Sbjct: 743 LRRRVKAMSYGL--------------AYGLSAYGLSQQLKI------------------- 769

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                           +    A+  +   V +  + + +   +                 
Sbjct: 770 -----------STEEAKEQMDAYFARFGGVRDYLHAVVEQARK----------------- 801

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                    +       GR     ++ ++            R            +Q  + 
Sbjct: 802 ---------DGYTSTVLGRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAA 843

Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKG 660
           DI+   M+   KA         I+L VHDE++ E    +      L    M     +   
Sbjct: 844 DIIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQLEALARDKMGGA--YPLD 901

Query: 661 LPLKAEGYESKRY 673
           +PL+      + +
Sbjct: 902 VPLEVSVGYGRSW 914


>gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
 gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211]
          Length = 857

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 96/614 (15%), Positives = 179/614 (29%), Gaps = 151/614 (24%)

Query: 72  NSYFERTVLKACFNL-DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           N+      L     +  + +      L++A          ++     L +   ++     
Sbjct: 379 NAK----ALATHLQVRGVSVEPGEDPLLIAYLLDNTVTNASLLAQAHLGAPWPDD--APT 432

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
                 +    L        +   +    Y   DV                 + L ++  
Sbjct: 433 RALATAQLLTALRP------QLDEKRAQLY--KDVE----------------RPLAHVLA 468

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +  RG  +D A    L+  +     +LD  ++ L      S    ++L++ L+ E GL 
Sbjct: 469 RMEVRGVRLDSAYLRGLSDSLGARAQELDARIQELAGHP-FSVNSRDQLESVLYDELGLA 527

Query: 251 LEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRL 304
               T+     +T    L   +   P    +   R   ++     L+ L   +N   GRL
Sbjct: 528 SGKKTKLTGKRSTAVSALEPLRDEHPIIPLLLEYR-ELTKLKGTYLDPLPNLVNPLTGRL 586

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             T     A  TGR S      QN+P  S +  E                         +
Sbjct: 587 HTTFAQ-TAVATGRLSSLNPNLQNIPIRSETGRE-------------------------I 620

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   IA +G  L+ AD + IE R+LA +A +    +AF  G D++  T A+   V    V
Sbjct: 621 RKGFIADDGFCLISADYSQIELRLLAHIADDALMQEAFVGGADIHRRTAAQVLGVMEDLV 680

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T +QR   K +                    G++                          
Sbjct: 681 TPNQRRAAKTVNF--------------GVLYGMS-------------------------- 700

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                   + +         R  + +   + R+ E  +       +              
Sbjct: 701 ----AHRLSNDLGISFAEASRFIERYFATYPRIREYIDATLAFGRE-------------- 742

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                       +  +    GR  +  ++ +      T      R            +Q 
Sbjct: 743 ------------HGYVETMYGRRRLVPELRSAN---RTMREAGERVAYNMP------IQG 781

Query: 605 VSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659
            + DI+   M+   +     G  ++L VHDE++ E P       + L   +M    +   
Sbjct: 782 TAADIIKIAMVELDEQLSALGARLLLQVHDELLIEAPSDRADEVAALTRRVMEGVVT--L 839

Query: 660 GLPLKAEGYESKRY 673
            +PL+ E      +
Sbjct: 840 KVPLRVEIGTGPNW 853


>gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68]
          Length = 385

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 138/383 (36%), Positives = 203/383 (53%), Gaps = 10/383 (2%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 4   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 62

Query: 62  ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
              +  +  HNS+F+RTVL+     L  P+ RW  T+V A ++GLP +L  + E L +  
Sbjct: 63  AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 122

Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            K   +EGK LI  FCK         R     H E WR F  Y   D+   RE++KRL  
Sbjct: 123 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 182

Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            + +  EL  W+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++  
Sbjct: 183 WNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 242

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+  +T +R ++    L     ++   R +AS ++  K   L+
Sbjct: 243 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKELLAIRQQASTTSTSKYKALM 301

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--D 353
           + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I  L         
Sbjct: 302 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLF 361

Query: 354 PDPLQIISDCVRSCVIASEGKKL 376
            + +++ S  +R C+IA  GK  
Sbjct: 362 DNIMELTSSALRGCIIAPTGKNW 384


>gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M]
 gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M]
          Length = 899

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 98/655 (14%), Positives = 190/655 (29%), Gaps = 139/655 (21%)

Query: 39  DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
           D      D     P     L E L +       H +      L       +       T 
Sbjct: 359 DGEGGYIDTATLTPDDDAALGEWLADPAKPKALHEAKLAIHDL-RGRGWTLN-GVTSDTA 416

Query: 98  VLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
           + A           L  +       +L ++  E+ +  +      +         +    
Sbjct: 417 LAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQQQLSLLDDDDTDVAAAQTAILRARAV 476

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                  +     +  T  +          E  + ++   +   G  VD+ +   L    
Sbjct: 477 IDLADALDAELDRIDSTGLLA-------DMELPVQHVLAEMETAGIAVDLTMLGGLQSHF 529

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKK 268
             +     +   ++    + +    ++L+  LF E G+     T+T   T    L S   
Sbjct: 530 ADQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFD 588

Query: 269 L--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
               P    +  +R   +R  V  ++ L+ ++  DGR+  T     A+ TGR S      
Sbjct: 589 KTGHPFLQHLLAHR-DVTRLKVT-VDGLLNSVADDGRIHTTFNQTIAA-TGRLSSTEPNL 645

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIE 385
           QN+P  + +                            +R   +  +G  +L+ AD + IE
Sbjct: 646 QNIPIRTDAGR-------------------------QIRDAFVVGDGYSELMTADYSQIE 680

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++ ++  ++AF TGEDL+    +R+F V   +VT + R   K M   L      
Sbjct: 681 MRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL------ 734

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     GL+                                  + +        + 
Sbjct: 735 --------AYGLS------------------------------AYGLSSQLKISTEDAKV 756

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               +  +   V +    L    EQ  ++G                             G
Sbjct: 757 QMDQYFSRFGGVRDY---LMAVVEQARKDGYTSTVL-----------------------G 790

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
           R     ++ ++            R            +Q  + DI+   M+   KA     
Sbjct: 791 RRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIEVDKALKEHA 841

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
               ++L VHDE++ E    +      L    M S   +   +PL+      + +
Sbjct: 842 LKSRMLLQVHDELLFEVAAGEREQIEALVRDKMGSA--YPLDVPLEVSVGFGRSW 894


>gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 892

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 103/690 (14%), Positives = 191/690 (27%), Gaps = 153/690 (22%)

Query: 11  RSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTI 68
           RS   +  +      A    +   AF          D        +  L   L +   T 
Sbjct: 324 RSDDPIGVEATGHWGAGTGDIDTLAFATTSDDAACVDVPELTPDDEKALAAWLTDPQATK 383

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGL---PSALKAVGEALKLSSQKME 124
             H +      L A +   + +      T + A           L  +            
Sbjct: 384 AMHGAK---GPLLALWARQLDLAGLDSDTQLAAYLLRPDQRSYDLDDLALRH-------- 432

Query: 125 EGKELIARFCKGETHECLYDRNKPNHRE--AWRLFGEYCKGDVTVTR----EIFKRLEPL 178
            G+EL     + +  E +         E           +    +      E+    +  
Sbjct: 433 LGREL-----RVQDSEQVNQETLDFGSERQPAETAMLRARAIAELAGVLDGELDDTSQRG 487

Query: 179 SSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E+    +   +  RG  +D+ +   L    D      +Q   +     + +    
Sbjct: 488 LLHSLEMPLERVLARMEQRGVAIDMDVLDQLRSEYDARVQAAEQAAFAAIGTQI-NLGSP 546

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKL 291
           ++L+  LF +  +     T++   T    L    +    P    +   R       +  +
Sbjct: 547 KQLQAVLFDQLDMPKTKRTKSGYTTDADALEKLYQKTRHPFLEHLLAYRDTIKLRQI--I 604

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           +TL+++ + DGR+  T     A  TGR S      QN+P  +                  
Sbjct: 605 DTLIKSTSDDGRIHTTYVQTVAG-TGRLSSTDPNLQNIPIRTPEGRR------------- 650

Query: 352 SDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                       +R   +  EG + L+ AD + IE RV+A  +G++  + AF +G D + 
Sbjct: 651 ------------IRDAFVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADFHS 698

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F+V   QVT  QR+  K M   L Y   A          GL+            
Sbjct: 699 MTASHVFDVPVEQVTPAQRSSVKQMNYGLAYGLSA---------YGLS------------ 737

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                              +   + Q    V +  + L    E+
Sbjct: 738 -----------------------SRLNVSVPEARALMDQYFQTFGPVRDYLDSL---VEK 771

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             + G                             GR     D+ ++        +   R 
Sbjct: 772 ARKQGYTETML-----------------------GRRRYLPDLNSSN---RQRRQMAERM 805

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+   +          ++L +HDE+V E    +    
Sbjct: 806 ALNAP------MQGTAADIIKTAMLQVEQELSASGLRSRMLLQIHDELVLEVAAGERDRV 859

Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             +    M         +PL       + +
Sbjct: 860 QQIVGDKMKHAIE--LTVPLDVSFGYGRSW 887


>gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121]
          Length = 466

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 77/535 (14%), Positives = 154/535 (28%), Gaps = 132/535 (24%)

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
             E  +   EY +  +    E+             L  +   + + G   DV     + +
Sbjct: 49  KAEMQKQLKEYNQESLLADLEL------------PLAEILSEMEEIGIFTDVKDLQQMEK 96

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
            +  +   L + +         +    ++L   LF    L +   T+   +T   VL   
Sbjct: 97  EIQEKLDVLIKNIHEAAG-EEFNINSPKQLGVVLFETLELPVIKKTKTGYSTAVDVLEQL 155

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           +   P    +   R   S+     +  L + ++ D R+        A +TGR S      
Sbjct: 156 QGQHPIIDYILEYRQ-LSKLQSTYVEGLQKVISDDHRIHTRFNQTLA-QTGRLSSVDPNL 213

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIE 385
           QN+P       +                         +R      S    ++ AD + IE
Sbjct: 214 QNIPIRLEEGRK-------------------------IRKAFKPTSSDSVILSADYSQIE 248

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA +  ++   +AF  G D++  T  + F+V   +V    R   K +   + Y    
Sbjct: 249 LRVLAHITQDESMKEAFINGHDIHTATAMKVFDVEADEVDSLMRRQAKAVNFGIVYGIS- 307

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                   +  L +         +   + +   + +   + ++       +         
Sbjct: 308 ----DYGLSQSLGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAKAQGFVETL------- 356

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                                               +RR +P +  +             
Sbjct: 357 ----------------------------------LHRRRYIPDITSRNFNLRSF------ 376

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
                      R+ +NT                   +Q  + DI+   M+   K      
Sbjct: 377 ---------AERTAMNTP------------------IQGSAADIIKLAMVQFNKEVQHTD 409

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
               ++L VHDE++ E P  +  + S  +  +M S       +PLK +      +
Sbjct: 410 YHAKLLLQVHDELIFEVPKDEVASFSKFVEEIMESALK--LDVPLKVDSSYGATW 462


>gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 842

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/665 (13%), Positives = 191/665 (28%), Gaps = 147/665 (22%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER 77
           K  I  + E+  +   +    +  +   D         ++   L +  V  + H+    R
Sbjct: 315 KIAIHCHFENNRLNKISLSCSEDNIFYIDQSCLQDALTIINSTLFSNGVLKIVHDI---R 371

Query: 78  TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
            + +    ++  +      ++++ S               + +       + +  F    
Sbjct: 372 KIREIFPTIERVLDSIDDLMIMSYSLD-TGKHD-----HSIPNIIAHNLSKNVETFSAKI 425

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
                    +   +E    F  Y + D                  + L  +   +   G 
Sbjct: 426 LIAIHEKLTQRLFQEKL--FTIYERFD------------------RPLMKVIFDMEQNGI 465

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +++     L+   +     L+ ++ +L      +    ++L   LF +  L  +  +++
Sbjct: 466 LLNIQKLQELSDKFEQLIAVLENDIHNLAG-EKFNIASPKQLSDVLFNKMELSKKKKSKS 524

Query: 258 ----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLG 312
               T   VL + ++   +      N    S+      + L++ ++  DGR+  +     
Sbjct: 525 GSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPIDGRIHTSFS-TT 583

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  S                              +R   IA +
Sbjct: 584 VTATGRLSSSNPNLQNIPIRSEEGN-------------------------FIRQAFIAPK 618

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G K++ AD + IE ++LA +A      +AF   +D++  T  + F V   ++ +  R   
Sbjct: 619 GCKIISADYSQIELKLLAHVANVTAFKEAFANRQDIHDITARQVFGV--QEIDEQLRRKA 676

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++    A                             
Sbjct: 677 KTIN--------------FGIIYGISPFGLAKR--------------------------- 695

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                            +   +  +        +A      +G                 
Sbjct: 696 ---LGITFQEAAEYINYYFSCYPEIKVYM---EKAVSIARNHGYVETL------------ 737

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR    RD+ N   YL        R             Q  + DI+  
Sbjct: 738 -----------FGRRCFVRDINNKIPYLRQF---AERAAINAPL------QGTAADIIKR 777

Query: 613 GMMNA-TKAGY-DIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYE 669
            M+    +     I+L VHDE++ E  ++     A ++  +M +       +PL+ E   
Sbjct: 778 AMIRLFDQLKSGKIILQVHDELLVEVEESRVQETAKLMKDIMENAVE--ISIPLEVEIKI 835

Query: 670 SKRYR 674
           S  + 
Sbjct: 836 SDNWG 840


>gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10]
          Length = 986

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 83/519 (15%), Positives = 153/519 (29%), Gaps = 121/519 (23%)

Query: 167 VTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +T+++ +          E+  +     +   G CV     H   + + V+  +L+QE+  
Sbjct: 573 LTKKLEELDMKELFYTIEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIYG 632

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
            T     +    ++L   LF +  L     T+   +T   VL       P   ++ + R 
Sbjct: 633 ETG-EHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDYRQ 691

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++      + L   +  DGR+ GT      + TGR S      QN+P       E   
Sbjct: 692 -LTKLKSTYADGLAGYIREDGRIHGTFNQ-TITATGRLSSTEPNLQNIPVRMELGRE--- 746

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R   +  EG   V AD + IE RVLA M+G++  ++A
Sbjct: 747 ----------------------IRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEA 784

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           +   ED++  T +  F+V   +VT  QR   K +                    G++   
Sbjct: 785 YRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNF--------------GIVYGIS--- 827

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                          + +              + + +  V +  
Sbjct: 828 ---------------------------AFGLSEDLSITRKEALEYINRYFETYPDVKKF- 859

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
             L +  E+  E G      K                       R     ++ +      
Sbjct: 860 --LDRLVEEGKEKGYVTTMFK-----------------------RRRPVPELSSKNFMQR 894

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
           +      R            +Q  + DI+   M               IVL VHDE++ E
Sbjct: 895 SF---GERVAMNSP------IQGTAADIIKIAMNRVDNRLRREGLKSKIVLQVHDELLIE 945

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               +      +    M         + L+ +      +
Sbjct: 946 AKKEELKRVQTILSEEMKHAAD--LRVALEIDMKTGNSW 982


>gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 870

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 94/666 (14%), Positives = 185/666 (27%), Gaps = 142/666 (21%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFN 85
           D   +  A  F        D        +  L + L +     + H++     +L    +
Sbjct: 323 DGQAVGLAL-FRGAQAAWLDLSGLDEAAENVLAQFLADAAAPKIFHDAKATMHLLA---D 378

Query: 86  LDIPIHRWIC-TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
             + +      TL+ A           +                L       +  +   D
Sbjct: 379 RGLKLAGIHDDTLISAYLIQPDRRSHDL---------VDVVQYHLKYAVPVHQAKKGELD 429

Query: 145 RNKPNHREAWRLFGEYCKGD--VTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVD 200
                      L       D    +  ++ ++         E  L  +   +   G  VD
Sbjct: 430 LGLTADLAEPALAQAQAIHDLSAFLATKLAEKHADKLAAEMELPLIPVLFEMERAGVAVD 489

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--- 257
           V   + L      +  +   +  +     V +    ++L+  LF E  L      +T   
Sbjct: 490 VDRLNELRAHFTEQVDQATNDAFAAIGHEV-NLSSPKQLQVVLFEELDLPRTKKIKTGFT 548

Query: 258 TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           T    L+    K   P  + +   R          ++ L++A + DGR+  T     A+ 
Sbjct: 549 TDAESLADLLVKTGHPFLVALMAYRDAIKLRQT--VDGLLKATHEDGRIHTTYAQTVAA- 605

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  S                              +R   +  EG +
Sbjct: 606 TGRLSSLNPNLQNIPVRSEEGRR-------------------------IRDVFMVGEGYQ 640

Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+  D + IE R++A ++ ++  ++A++ GEDL+    +R FNV P +VT + R+  K 
Sbjct: 641 SLLTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLHRYVGSRVFNVEPEEVTSEMRSKVKA 700

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           M   L Y            +  L                                     
Sbjct: 701 MSYGLAYG-----LSSFGLSKQL------------------------------------- 718

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                     ++ K +  +   V      +     +                        
Sbjct: 719 --KIGVDEARKLMKDYFDRFGAVRTYLRSVVDQARK------------------------ 752

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
             +       GR     ++ ++            R            +Q  + D++   M
Sbjct: 753 --DGYTETIFGRRRYLPELNSSD---RRLRDIAERAALNAP------IQGSAADLVKVAM 801

Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
           +   +          ++L VHDE++ E  + +      L    M         +PL  + 
Sbjct: 802 LRIDEELKAGEYKSRMLLQVHDELILEIAEGELEPVQELVTREMGQAAELL--VPLDVQP 859

Query: 668 YESKRY 673
              + +
Sbjct: 860 GVGRTW 865


>gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J]
 gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J]
          Length = 881

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 98/661 (14%), Positives = 187/661 (28%), Gaps = 147/661 (22%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNLDIPIH 91
           F + +              P+VLK  +    +      + ++     +L +  N+D+P  
Sbjct: 342 FAWGNTENIYVS-----QNPEVLKTDVFQAFLRKPM--ATYDFKRAKILLSHLNIDVPRG 394

Query: 92  RWICTLVLARSNGL--PSALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRN 146
                 +          + L  +        L S  +  GK +   F           + 
Sbjct: 395 A-FDARLANYLLSNVDDNQLSTIARVHTNIHLESDDVVYGKGVKRAFPDKGLLFAHLAKK 453

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                E+     +              +L      E  L  +   +   G  V+      
Sbjct: 454 IKVLVESKATMLDK--------LSDHDQLALFEDIEMPLANVLAKMEITGIKVNKETLVE 505

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQR 261
           + +   V   +L QE+  L      +    ++L + LF +  L +     T+   +T   
Sbjct: 506 MAEQNKVIIDRLTQEIYDLAG-EEFNINSPKQLGSILFEKMQLPIEMTKKTKTGYSTAVD 564

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL     + P   ++ + R   ++     L  L + +  DG++         ++TGR S 
Sbjct: 565 VLERLAPIAPVVAKILDYRQ-ITKLQSTYLIGLQDYIMEDGKIHTRYVQD-LTQTGRLSS 622

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380
                QN+P                                 +R    AS E   L+ +D
Sbjct: 623 IDPNLQNIPIRMEQGR-------------------------LIRKAFTASSEDALLLSSD 657

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMELAL 439
            + IE RVLA ++G+Q  + AF    D++ +T  R F +   +  T + R   K +   +
Sbjct: 658 YSQIELRVLAHISGDQHLITAFNEDADIHTSTAMRVFAIDKEEDVTANDRRNAKAVNFGI 717

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y            +  L                                          
Sbjct: 718 VY-----GISDFGLSNNL---------------------------------------GIS 733

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +     +  ++  + +  + + +  +                              
Sbjct: 734 RQKAKEYINTYFDRYPGIKDYMDSIVREAKD--------------------------KGY 767

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +     R     D+ +             R            +Q  + DIL   M+N  K
Sbjct: 768 VETLFKRRRELPDINSRNF---NVRSFAERTAINSP------IQGSAADILKIAMINLDK 818

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
           A         ++L VHDEIV E P  +      L    M         +PL+A+    K 
Sbjct: 819 ALEEGRFKTKMLLQVHDEIVLEVPKDELEKVKQLVKETMEHAVD--LSVPLRADENSGKS 876

Query: 673 Y 673
           +
Sbjct: 877 W 877


>gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
 gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160]
          Length = 912

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 96/667 (14%), Positives = 187/667 (28%), Gaps = 136/667 (20%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLK-ACF 84
             +   A    D      D            L + L + D   V H       +L     
Sbjct: 356 GELTGIALAGGDDHATFVDLGPGLDAVDEQALADWLADPDAQKVVHEVK--GPLLAVWAR 413

Query: 85  NLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
             D+       T + A           L  +         K    +E           E 
Sbjct: 414 GWDLA-GVVSDTALAAYLALPGQRSFDLADLAVRYLRRELKDSAAEETQLTLDGMGPSEE 472

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCV 199
              R   +      +        +     + +R         E  L ++   +  RG   
Sbjct: 473 DLAREAAHADVLKAVAVNDLSDALDSL--LGQRGGDALLGGIELPLTFVLARMEQRGIAA 530

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257
           D+   H L +           E  ++    V +    ++L+  LF E GL      ++  
Sbjct: 531 DLDFLHELQREFADGVAAAAAEAYAVIGREV-NLGSPKQLQAVLFDELGLPKTKKIKSGY 589

Query: 258 -TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
            T    L++       P    +  +R   +R     ++ L+  ++  GR+  T Q   A+
Sbjct: 590 TTDAEALTNLLAQTGHPFLEHLLRHR-DVTRLR-TVIDGLIPMVDDGGRIHTTFQQTIAA 647

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S      QN+P  +                              +R   +   G 
Sbjct: 648 -TGRLSSIDPNLQNIPIRTAEGRR-------------------------IRQAFVVGSGH 681

Query: 375 K-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           + L+ AD + IE R++A ++G+   ++AF +GEDL+    +R++++    V  + R   K
Sbjct: 682 ESLMTADYSQIEMRIMAHLSGDAGLIEAFTSGEDLHSFVASRAYDIPIEDVDPEMRRRIK 741

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            M   L Y               L ++      + ++  E +     +   + ++  +  
Sbjct: 742 AMSYGLAYG-----LSAYGLAGQLRISVEEAREQMHAYFERFGGIREYLDGVVDDARQTG 796

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                                                           +RR +P +    
Sbjct: 797 YT-----------------------------------------ETTLGRRRYLPDLTSD- 814

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                     +G+     +                R            +Q  + D++   
Sbjct: 815 ----------NGQRRQMAE----------------RMALNAP------IQGSAADVIKVA 842

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+   +A         ++L VHDE+V E    +      L    M         +PL+  
Sbjct: 843 MLRVEQAIADEGLRSRMLLQVHDELVLEVAPGEREALETLVRREMAGAAQ--LSVPLEVS 900

Query: 667 GYESKRY 673
               + +
Sbjct: 901 VGFGRTW 907


>gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 824

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 140/475 (29%), Gaps = 89/475 (18%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--------HDPVMPQVL 57
            D ET                D  ++ ++F +                   +   +   L
Sbjct: 407 FDLETAGLDP---------VHDP-IVGYSFSWQKGTAYYLPVRAPAGEPVLNPDTVLAAL 456

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGE 114
           K   EN  +    HN  F+  VL     +++       ++V             L  +  
Sbjct: 457 KPVFENPAIEKRNHNIKFDLIVLA-ASGVELAGVA-GDSMVAHYLLDPGARAHGLDDLT- 513

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG----------- 163
            L          KELI              +             +Y              
Sbjct: 514 -LDELRHTNISIKELI----------GTGKKQITMAEVPVARVRDYACEDADAALQLAAA 562

Query: 164 -----DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
                D    RE++  LE           +   +   G  VDV     L   +  E    
Sbjct: 563 FEPRLDAAGLRELYDTLEVPL------IRVLAEMEHVGIRVDVPFLVQLGVQMGEELAGY 616

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT-----ETTCQRVLSSNKKLTPQA 273
           + ++ +L      +   L++L+  LF E  L ++  T      +T Q  L     L  + 
Sbjct: 617 EGDIHALAGRA-FNIGSLKELQKILFDELKLPVQKRTGIKNEPSTDQESLERLAALGHEL 675

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +      + S+     ++ L    + +GR+  +     A  TGR S      QN+P  +
Sbjct: 676 PKKLLAYRKVSKLKSTYVDVLPALADKNGRVHTSFNQASAE-TGRLSSSEPNLQNVPTRT 734

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R   I  +G  LV AD + IE R+L    
Sbjct: 735 EQG-------------------------AQLRKAFIPRDGWVLVTADYSQIELRLLTHFC 769

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           G+     AF    D++    A+ F V   +VTK QR + K +   + Y   A   
Sbjct: 770 GDDTLRAAFAEDRDVHTAVAAQIFKVPEGEVTKAQRGVAKTVNFGVLYGMSATGL 824


>gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 921

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 94/577 (16%), Positives = 168/577 (29%), Gaps = 130/577 (22%)

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +   L    +       L   +      +                     + D      
Sbjct: 459 GLAAYLVNPEESDYAWPRLAVHWGAPLRDDGPGPALLALRMVEVLEAR--MRQDGLAEL- 515

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                    S E  L  +   +  RG  +D A   +    V      L   +        
Sbjct: 516 -------YESLELPLTPILADMERRGIAIDAAAFESFLSDVQGRLDTLTAAVYEAAG-RE 567

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            + R  ++L   LF    L     T+    +T Q  L       P    V   R +  + 
Sbjct: 568 FNIRSAQQLGDVLFSTLELPSPRKTKGGQASTSQDTLEKLAGRHPVVDSVLEFR-KLEKM 626

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
               L+ L   M+ +GR+  T     A+ TGR S      QN+P                
Sbjct: 627 RSTYLDPLPRLMDGNGRIHTTFNQ-KATATGRLSSSNPNLQNIPVRG------------- 672

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                        +   +R+C IA+ G  LV AD + +E RVLA M+ ++  L+AF  GE
Sbjct: 673 ------------DLGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGE 720

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A  +++AP QV+ DQR   K +                    G+         
Sbjct: 721 DIHARTAALVYDLAPDQVSPDQRRNAKTINF--------------GLIYGMG-------- 758

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                   +   +     +  +     +  + + + E ++ +  
Sbjct: 759 ----------------------AQKLGQDLKISTSEAKEFIARYFSRLTGLKEFYDSVEA 796

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
             +     G                             GR  +  D+ +           
Sbjct: 797 TAK---RQGYVTTLG-----------------------GRRRLLPDIHSPN---GQAYAL 827

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTD 640
             R+          ++Q  + DI+   M+         +    ++L VHDE++ E P+  
Sbjct: 828 ARRQAI------NTVIQGSAADIIKLAMLAVAEDEQLREHEARLLLQVHDELLLEVPEAS 881

Query: 641 EFNA-SMLYHLMTSNPSWA--KGLPLKAEGYESKRYR 674
              A + +  LM+S         +PL  +    K + 
Sbjct: 882 ARAAGARVADLMSSVKPGGEPLSVPLVVDWGVGKNWG 918


>gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321]
 gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321]
          Length = 877

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 101/669 (15%), Positives = 198/669 (29%), Gaps = 152/669 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83
            ++ FA+ + D             + Q    K+ LE T + +      ++     VL   
Sbjct: 333 DLVGFAWSYGDK----LYATDKLELLQEPIFKDFLEKTPLRV------YDFKKAKVLLNH 382

Query: 84  FNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           F +D+       + +             + + ++     L   +   GK +     + E 
Sbjct: 383 FGVDLQ-APAFDSRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIPEREK 441

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
                 R      E   +  E    +  +   ++         EQ L ++   +   G  
Sbjct: 442 FLEHLARKLAVLIETEPILLEKLSENGQLEL-LY-------DMEQPLAFVLAKMEIAGIT 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   +                G++    ++                           
Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 725 ---NLGISRKEAKTYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELTEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|168211075|ref|ZP_02636700.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
 gi|170710890|gb|EDT23072.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC
           3626]
          Length = 642

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 102/721 (14%), Positives = 185/721 (25%), Gaps = 155/721 (21%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51
             +  D E     +   L +           ++  +    +         H         
Sbjct: 23  KVVAFDIECAPKNEWFRLNEKKAALDPNKGHIVGISLSVKEGTGIYIPLRHRNGKNVEDV 82

Query: 52  -VMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
             M   LK     N  +  VAHN  FE + L     + I       T+      G     
Sbjct: 83  HRMIAWLKGFVFHNESLIKVAHNISFESSFLCEY-GIVIK-EPVFDTM-----LGSMLTF 135

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           K+ GE   L    ++   + I           +   +  N     +    Y   D     
Sbjct: 136 KSFGEFRTLRDSGLKLLAKEIFNEDLPSFSHVVNGTHFDNLHSEHKETVRYACADSDYAL 195

Query: 170 EIFKRLEPLSSKEQELWYLDQT------------INDRGYCVDVALAHTLNQIVDVERTK 217
            ++               L               +   G  ++  L    N+  + E   
Sbjct: 196 RLYNWCMEWFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEELEF 255

Query: 218 LDQELESLTYGLVSSSR--CLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKK--- 268
             +E+ S     V+       +  K +LF +  L +    E    +     L   ++   
Sbjct: 256 CKREILSFANREVNLGSNLQTQDFKDFLFKDLRLPVLKICEKGDPSLDDESLILLEEWCI 315

Query: 269 ----LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                    I+      R S+     +  L + +N +     T  F   + TGR+S    
Sbjct: 316 RNFKKGTYLIECIKRHKRVSKLKSTYIEALGKLLNCETGKIHTDFFSMGAETGRFSSRNP 375

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QNLPR    H                           +R   I S     +  D + I
Sbjct: 376 NLQNLPRKDNDHLG-------------------------IRKLFIPSPNHVFLDFDFSQI 410

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT-------KDQRAIGKVMEL 437
           E RV A+   ++  + AF    D++  T +  +N+   + T       K +R I K    
Sbjct: 411 ELRVGAYYCKDRKMINAFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKNCNF 470

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + +    K  QK     G                                         
Sbjct: 471 GVFFGLFPKGLQKTLMYKG--------------------------------------GIN 492

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                CER+ +  +  + R+S    +  +                               
Sbjct: 493 ISEKDCERIIRNIKDGYPRLSTWQKDTVKVA--------------------------AYR 526

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                 +GR    +D+ +             +            +Q  + DI+   M   
Sbjct: 527 GYTRSRTGRRRYLKDMKSKD---------WNKRAVSERCALNTPIQGTAADIIKIAMARI 577

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAKGLPLKAEGYESK 671
                 +     +L +HDE++ E  +         +   M   P     +P+K E     
Sbjct: 578 LRELPERGYIKPLLQIHDELLFEVREDKVNEAIVFIKDCMERTPFKDFNIPIKVEYSVGY 637

Query: 672 R 672
            
Sbjct: 638 N 638


>gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 906

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 102/682 (14%), Positives = 194/682 (28%), Gaps = 164/682 (24%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKAC 83
           A D      A    D      D        +  L   L +       H +      L   
Sbjct: 351 AYDADATALAIVSADGEGRYIDTSALQPDDEAALASWLADPGPPKALHEAK-----LAMH 405

Query: 84  FNLDIPIHRWI------CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFC 134
              D+    W        T + A          +L+ +                 + R  
Sbjct: 406 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLEDLSLRY-------------LRREL 449

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQE 184
           + ET E        ++        +          ++   L+   +           E  
Sbjct: 450 RAETAEQQQLSLLDDNDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLGGMELP 509

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           +  +   +   G  VD+ L   L      +     +   ++    + +    ++L+T LF
Sbjct: 510 VQRVLAGMEHTGIAVDLELLGELQSDFAHQIRDAAEAAYAVIGKQI-NLGSPKQLQTVLF 568

Query: 245 LETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
            E  +     T+T   T    L S       P    +  +R   +R  V  ++ L+ ++ 
Sbjct: 569 DELEMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLTHR-DVTRLKVT-VDGLLASVA 626

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           SDGR+  T     A+ TGR S      QN+P  + +                        
Sbjct: 627 SDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEAGRR--------------------- 664

Query: 360 ISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R   +  +G  +L+ AD + IE R++A ++ ++  ++AF TGEDL+    +R+F 
Sbjct: 665 ----IRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFG 720

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V   +VT + R   K M   L                GL+    +  +K           
Sbjct: 721 VPIGEVTAELRRRVKAMSYGL--------------AYGLSAYGLSQQLKI---------- 756

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                                    +    A+  +   V +    +     +        
Sbjct: 757 --------------------STEEAKEQMDAYFARFGGVRDYLMNIVDQARK-------- 788

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                             +       GR     ++ ++            R         
Sbjct: 789 ------------------DGYTSTVLGRRRYLPELDSSN---RQVREAAERAALNAP--- 824

Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-M 651
              +Q  + DI+   M+   KA         ++L VHDE++ E    +      L    M
Sbjct: 825 ---IQGSAADIIKVAMIEVDKAIKEAGLKSRMLLQVHDELLFEVAPGERERLEALAREKM 881

Query: 652 TSNPSWAKGLPLKAEGYESKRY 673
                +   +PL+      + +
Sbjct: 882 GGA--YPLDVPLEVSVGYGRSW 901


>gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
 gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3]
          Length = 875

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 87/668 (13%), Positives = 199/668 (29%), Gaps = 153/668 (22%)

Query: 35  FGFDDHPVEL------WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FN 85
           +  D+ PV             +  + +  KE  E+ D+        F+          + 
Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVDLVESFKEEFESKDINK----LSFDIKPCIYHLMRYG 383

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYD 144
           +DI  + +   +++           ++               ++I    K  E       
Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSM----------ERSDPKVIGYDFKPLEDITGKGK 432

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQTINDR 195
             K       +    Y    +  T ++++++  +  ++           L  +   +   
Sbjct: 433 SKKTILESDEKEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFT 492

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G CV       + ++ + E   ++  +E L    + +    ++L   LF +  L +    
Sbjct: 493 GVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKKN 551

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T Q VL +          +   R   ++     ++ +V+ +  DG++  T Q   
Sbjct: 552 KTGPSTDQEVLEALSGRHEIIDYILRYR-TITKLKTTYIDGMVDLIKEDGKIHTTFQQTI 610

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
           A +TGR S      QN+P  +                              +R   + SE
Sbjct: 611 A-QTGRISSTNPNLQNIPIRTEEGR-------------------------LIRKAFVPSE 644

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  L+ AD + IE RVLA +A ++  + AF+ G D++  T +  F V   +VT  QR+  
Sbjct: 645 GNMLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNA 704

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   +                G+   + +  +                          
Sbjct: 705 KAVNFGIV--------------YGIGDYSLSKDLHI------------------------ 726

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                      +   + +   +  + +   ++    ++                      
Sbjct: 727 ------TRKEAKEYIENYLDTYKGIKQYMEDIVAIGKE---------------------- 758

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                  +     R     ++ +             R            +Q  + DI+  
Sbjct: 759 ----KGYVETIMNRRRYIPELKSKN---YNVRSFGERVA------LNTPIQGSAADIIKV 805

Query: 613 GMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA 665
            M+         K    ++L VHDE++ + P  +      ++  +MT        + +  
Sbjct: 806 AMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDV 865

Query: 666 EGYESKRY 673
               +  +
Sbjct: 866 NS--ADNW 871


>gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R]
 gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 880

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 93/673 (13%), Positives = 194/673 (28%), Gaps = 144/673 (21%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYF 75
              G   YA        A     H   L D        +  L   L + +   + H +  
Sbjct: 331 KPAGGDAYA-------LAIADTKHHAVLVDLADISAEDEKALATWLASEN-PKMLHGAKA 382

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
              +L      ++       T + A           + +            + L  +   
Sbjct: 383 AYHMLA-GRGFELH-GVVHDTAIAAYLLRPGQRTYELADVY---------QRHLQRQLST 431

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTIN 193
            +    L   +  + +          +    +T+++ +        + E+    +   + 
Sbjct: 432 NDNGGQLALLDAADDQSLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARME 491

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  VDVA      +    +  + ++    L      +    ++L+  LF   G+    
Sbjct: 492 AIGIAVDVATLEEQLKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTK 551

Query: 254 LTE---TTCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            T+   +T    + +   K   P    +  +R    +     L  L+  +  DGR+  T 
Sbjct: 552 KTKTGYSTAAAEIEALAIKNPHPFLDHLLAHRQY-QKMKTT-LEGLIREVAPDGRIHTTF 609

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A  TGR S      QN+P  + +  +                         +RS  
Sbjct: 610 NQTVA-STGRLSSTDPNLQNIPVRTEAGRK-------------------------IRSGF 643

Query: 369 IASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG   L+ AD + IE RV+A ++ +   ++A+  GEDL+    ++ FNV    VT +
Sbjct: 644 VVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPE 703

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K M   L                GL+    +  +   +                 
Sbjct: 704 LRRQVKAMSYGLV--------------YGLSAFGLSQQLSIPAG---------------- 733

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                           +++ +++ ++   V     E+ +   +                 
Sbjct: 734 --------------EAKQIMESYFERFGGVQRYLREIVEEARKA---------------- 763

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                            GR     ++ ++            R            +Q  + 
Sbjct: 764 ----------GYTETLFGRRRYLPELTSDN---RVARENAERAALNAP------IQGTAA 804

Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKG 660
           DI+   M+   ++         ++L VHDE+V E    +      +    M +       
Sbjct: 805 DIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LS 862

Query: 661 LPLKAEGYESKRY 673
           +PL+    +   +
Sbjct: 863 VPLEVSAGDGVNW 875


>gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13]
          Length = 851

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 86/510 (16%), Positives = 164/510 (32%), Gaps = 123/510 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           +   E  L  +  ++   G  VD          +  E  +L++E+ +L      +    +
Sbjct: 446 MEEIELPLVEVLASMEHTGVLVDQDGVRRFGDALSGEIRQLEEEIYTLAG-KQFNIASPK 504

Query: 238 KLKTWLFLETGLHLE---DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
           +L   LF +  +        T+    +T   VL   +   P    +   R   ++     
Sbjct: 505 QLGQVLFEDLEIPHPQGKKKTKTGSFSTNAEVLEKLRGAYPIVSLILRYRQ-LTKLNSTY 563

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++ +  DGR+    +    +RTGR S      QN+P  +   +E            
Sbjct: 564 VAGLLKTVAPDGRIHTCFKQ-TETRTGRISSTEPNMQNIPVRTELGKE------------ 610

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   +A  G+ L+ AD + IE R+LA +  +    +AF +G D++ 
Sbjct: 611 -------------MRKFFVAPRGRILLDADYSQIELRILANLCEDANMQQAFLSGADIHA 657

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           +T A+ F V    VT   R+  K +   + Y  GA +  +      + ++          
Sbjct: 658 STAAQVFGVPREAVTPQMRSAAKAVNFGIIYGIGAYSLSQ-----DIGVSVREADRYIKR 712

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             E +   E F   + E+           G          R++   +    N++ QA   
Sbjct: 713 YLENFPRVEQFMTRIVEDAERTGFVSTLFGR---------RREVPELKS-HNKIQQAA-- 760

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                                             GR +                      
Sbjct: 761 ----------------------------------GRRI---------------------- 764

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+   M+   +          ++L VHDE++ E    D   A
Sbjct: 765 AMNTP------IQGTAADIIKIAMIRVYRRLAREQLDARLILQVHDELIVEAAVQDADRA 818

Query: 645 SML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           +++    M     W   +PL AE  + + +
Sbjct: 819 AVILREEMEHA--WDMAVPLTAEVGKGESW 846


>gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
 gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662]
          Length = 880

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 83/597 (13%), Positives = 158/597 (26%), Gaps = 127/597 (21%)

Query: 91  HRWICTLVLARSNGL---PSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                  + A              +    L +     +E  +      +        ++ 
Sbjct: 393 KSIFDAALAAYLINPLKSTYEYDDISRDYLGIMLPSKKELLDKRKSIFEEGKLLPEGEQI 452

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                         C   +         L      E         +  RG  VD      
Sbjct: 453 IGYE----AYVACACIEPLRKKLTETGMLSLYEEIEIPTMVALHDMEVRGIHVDRKALKE 508

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
               +     +L + +         +    ++L   LF    L     T+   +T   VL
Sbjct: 509 YGDQLIGRIEELRELIYKEAG-EEFNINSPKQLGVVLFEHMKLEGGKKTKTGYSTSVDVL 567

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
              + L P    +   R   ++      + L   +  D R+ G       + TGR S   
Sbjct: 568 EKIEHLYPIISYILEYRQ-LTKLKSTYADGLANYIGDDERIHGKFNQ-TITATGRISSTE 625

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P                                 +R   +  EG   V AD + 
Sbjct: 626 PNLQNIPARVELGRA-------------------------IRKVFLPEEGYTFVDADYSQ 660

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA ++G++  + A+E  +D++  T +  F V   QV+  QR   K +        
Sbjct: 661 IELRVLAHLSGDKNLIHAYEMEQDIHARTASEVFGVPIDQVSSIQRRDAKAVNF------ 714

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 715 --------GIVYGLS------------------------------AFGLSQDLKITRKQA 736

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +     + + + +V E    L++  E+  E G      +                     
Sbjct: 737 QEYIDKYFETYPKVKEY---LNREVEKGKEEGFVTTMFQ--------------------- 772

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618
             R     ++ ++            R            +Q  + DI+   M+        
Sbjct: 773 --RIRPIPELKSSNFMQRNF---GERVAMNSP------IQGSAADIIKIAMIRVNMELKK 821

Query: 619 -KAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            K    ++L +HDE++ E  D++      +L   M S       +PL  + +    +
Sbjct: 822 RKLKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAAK--LSVPLSIDIHTGNSW 876


>gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Corynebacterium glutamicum ATCC 13032]
          Length = 905

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 91/657 (13%), Positives = 192/657 (29%), Gaps = 137/657 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            A         L D        +  L   L + D   + H +     +L      ++   
Sbjct: 365 LAIADTKRHAVLVDVADISAEDEKALATWLASED-PKMLHGAKAAYHMLA-GRGFELH-G 421

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T + A           + +      + ++          +    +   D++  +  
Sbjct: 422 VVHDTAIAAYLLRPGQRTYELADVY---QRHLQRQLSTNDNGGQLTLLDAADDQSLVDDV 478

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQ 209
            A     E       +T+++ +        + E+    +   +   G  VDVA      +
Sbjct: 479 IAILELSE------ELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLK 532

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
               +  + ++    L      +    ++L+  LF   G+     T+   +T    + + 
Sbjct: 533 TFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEAL 592

Query: 267 --KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K   P    +  +R    +     L  L+  +  DGR+  T     A  TGR S    
Sbjct: 593 AIKNPHPFLDHLLAHRQY-QKMKTT-LEGLIREVAPDGRIHTTFNQTVA-STGRLSSTDP 649

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAG 383
             QN+P  + +  +                         +RS  +  EG   L+ AD + 
Sbjct: 650 NLQNIPVRTEAGRK-------------------------IRSGFVVGEGYETLLTADYSQ 684

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RV+A ++ +   ++A+  GEDL+    ++ FNV    VT + R   K M   L    
Sbjct: 685 IEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLV--- 741

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+    +  +   +                                 
Sbjct: 742 -----------YGLSAFGLSQQLSIPAG------------------------------EA 760

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +++ +++ ++   V     E+ +   +                                 
Sbjct: 761 KQIMESYFERFGGVQRYLREIVEEARKA--------------------------GYTETL 794

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
            GR     ++ ++            R            +Q  + DI+   M+   ++   
Sbjct: 795 FGRRRYLPELTSDN---RVARENAERAALNAP------IQGTAADIIKVAMIRVDRSLKE 845

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE+V E    +      +    M +       +PL+    +   +
Sbjct: 846 AAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEVSAGDGVNW 900


>gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 913

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 102/673 (15%), Positives = 195/673 (28%), Gaps = 146/673 (21%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKAC 83
           A D      A    D      D        +  L   L +       H +      L   
Sbjct: 358 AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK-----LAMH 412

Query: 84  FNLDIPIHRWI------CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARF 133
              D+    W        T + A          +L  +    L+   +     ++ ++  
Sbjct: 413 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENPQQQQLSLL 469

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
              +  +    +       A     +    D  + R     L         +  +   + 
Sbjct: 470 DDTDGTDDQAVQTLILRAVAVLDLAD--ALDEELARINSTSLLSGME--LPVQRVLAGME 525

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
           + G  VD+ L   L      +     +   ++    + +    ++L+  LF E  +    
Sbjct: 526 NAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELQMPKTK 584

Query: 254 LTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            T+T   T    L S       P    +  +R  A+R  V  ++ L+ ++ SDGR+  T 
Sbjct: 585 RTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVASDGRIHTTF 642

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  + +                             R   
Sbjct: 643 NQTIAA-TGRLSSTEPNLQNIPIRTEAGRRT-------------------------RDAF 676

Query: 369 IASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  +G  +L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F V   +VT +
Sbjct: 677 VVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGE 736

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K M   L                GL+    +  +K                    
Sbjct: 737 LRRRVKAMSYGL--------------AYGLSAYGLSQQLKI------------------- 763

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                           +    A+  +   V +  + + +   +                 
Sbjct: 764 -----------STEEAKEQMDAYFARFGGVRDYLHAVVEQARK----------------- 795

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                    +       GR     ++ ++            R            +Q  + 
Sbjct: 796 ---------DGYTSTVLGRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAA 837

Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKG 660
           DI+   M+   KA         I+L VHDE++ E    +      L    M     +   
Sbjct: 838 DIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMGGA--YPLD 895

Query: 661 LPLKAEGYESKRY 673
           +PL+      + +
Sbjct: 896 VPLEVSVGYGRSW 908


>gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205]
 gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205]
          Length = 899

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 96/647 (14%), Positives = 181/647 (27%), Gaps = 132/647 (20%)

Query: 44  LWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +D        +  L   L +     V H+S        A     I       T + A  
Sbjct: 363 WFDPGRLEAADESALAGWLADETRPKVLHDSKPAVLAFAAH-GWSIEGIT-RDTQIAAYL 420

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    L  +         +++   +      +G  ++   ++N             
Sbjct: 421 ARPDQRSYDLVDLALRYLHRELRVDTP-DTGQLTFEGLGNDGEAEQNLMLRA--RATLDL 477

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
               D  ++R+  +    ++  E  L  +  ++   G   D      L      E     
Sbjct: 478 ADAIDAELSRDGEQSSRLMAGVELPLMRVLASMERTGIAADTQYLSELEAQFAAEVKAAA 537

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNK--KLTPQAI 274
           Q           +    ++L+  LF+E GL      +T   T    L         P   
Sbjct: 538 QGAYEAVG-REFNLGSPKQLQEILFVELGLPKTKRIKTGYTTDADALQWLHAQNPHPVLG 596

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +  +R   ++     ++ L+++++ DGR+  T     A+ TGR S      QN+P  + 
Sbjct: 597 HLLRHR-DVAKLKTT-VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRTE 653

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMA 393
                                        +R   +  EG + L+ AD + IE R++A ++
Sbjct: 654 EGRR-------------------------IRRAFVVGEGYECLLTADYSQIEMRIMAHLS 688

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +   + AF +G D +  T +  F V   +VT DQR   K M                  
Sbjct: 689 ADDVLIDAFNSGRDFHAATASSVFQVPVEEVTTDQRRKIKAMNYG--------------L 734

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             GL+    +                                          + + +   
Sbjct: 735 AYGLSAFGLSQQ------------------------------LGVTAEEARGLMEIYFAG 764

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              V +   E+     +   +G                             GR     D+
Sbjct: 765 FGGVRDYLQEV---VARARHDGYTETVL-----------------------GRRRYLPDL 798

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLT 627
            ++            R            +Q  + DI+   MM    A         ++L 
Sbjct: 799 VSDN---RQRREMAERMALNAP------IQGSAADIIKVAMMRVDSAVHDAGLRSRMLLQ 849

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           VHDE+V E    +      L    M     +   +PL+    + + +
Sbjct: 850 VHDELVFEVAPGERERLEELVRREMGEA--YPLSVPLEVSVGDGRDW 894


>gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1]
 gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1]
          Length = 986

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 82/519 (15%), Positives = 152/519 (29%), Gaps = 121/519 (23%)

Query: 167 VTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           + +++ +          E+  +     +   G CV     H   + + V+  +L+QE+  
Sbjct: 573 LMKKLEELDMKELFYTIEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIYG 632

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
            T     +    ++L   LF +  L     T+   +T   VL       P   ++ + R 
Sbjct: 633 ETG-EHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDYRQ 691

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             ++      + L   +  DGR+ GT      + TGR S      QN+P       E   
Sbjct: 692 -LTKLKSTYADGLAGYIREDGRIHGTFNQ-TITATGRLSSTEPNLQNIPVRMELGRE--- 746

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R   +  EG   V AD + IE RVLA M+G++  ++A
Sbjct: 747 ----------------------IRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEA 784

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           +   ED++  T +  F+V   +VT  QR   K +                    G++   
Sbjct: 785 YRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNF--------------GIVYGIS--- 827

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                          + +              + + +  V +  
Sbjct: 828 ---------------------------AFGLSEDLSITRKEALEYINRYFETYPDVKKF- 859

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
             L +  E+  E G      K                       R     ++ +      
Sbjct: 860 --LDRLVEEGKEKGYVTTMFK-----------------------RRRPVPELSSKNFMQR 894

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
           +      R            +Q  + DI+   M               IVL VHDE++ E
Sbjct: 895 SF---GERVAMNSP------IQGTAADIIKIAMNRVDNRLRREGLKSKIVLQVHDELLIE 945

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               +      +    M         + L+ +      +
Sbjct: 946 AKKEELKRVQTILSEEMKHAAD--LRVALEIDMKTGNSW 982


>gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
 gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190]
          Length = 939

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 101/635 (15%), Positives = 188/635 (29%), Gaps = 134/635 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSA---LKAV 112
           L E L +  V   +H+      VL A       +      T + A           L  +
Sbjct: 416 LGEWLADPAVPKASHDVK---AVLHALRGRGWTLAGLTSDTALAAYLAKPGQRSFDLADL 472

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT-VTREI 171
                L  +   EG     +       E     +      A     E    D        
Sbjct: 473 ALRY-LRRELAMEGAPADGQLSLLGGEEEADRAHADAEMVAASAVAELA--DALGAELAE 529

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            ++   L   EQ L ++   +   G  VD A   +L      +  +  Q+  ++    + 
Sbjct: 530 KEQNGLLLELEQPLAFVLADLEAAGIAVDRANLESLEAEFAGQVAQAAQDAYAVIGKEI- 588

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRS 286
           +    ++L+  LF E G+     T+T   T    L+   +         +  +R  A+R 
Sbjct: 589 NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALAGLFEQTGHEFLQHLLLHR-DATRL 647

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
            V  ++ L++++ +DGR+  T     A+ TGR S      QN+P  + +           
Sbjct: 648 KVT-VDGLLKSIAADGRIHTTYSQTIAA-TGRLSSTEPNLQNVPIRTAAGRR-------- 697

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                            +R+  +  +G  +L+ AD + IE R++A ++ +   ++AF + 
Sbjct: 698 -----------------IRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFRSQ 740

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D +  T ++ F V  A V+ +QRA  K M   L Y            +  L        
Sbjct: 741 RDFHSETASKVFGVDAADVSPEQRAKIKAMNYGLAYG-----LSAFGLSGQL-------- 787

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                   +   + +    V +    + 
Sbjct: 788 -------------------------------RISTEEARGLMDDYFETFGGVRDYLRSIV 816

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
               +                          +       GR     D+ ++         
Sbjct: 817 DVARK--------------------------DGYTATMLGRRRYLPDLTSDN---RQRRE 847

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT 639
              R            +Q  + DI+   M+    A         ++L VHDE+V E  D 
Sbjct: 848 MAERMALNAP------IQGSAADIIKVAMLRVHAALQAEGLRSRMLLQVHDELVLEVADG 901

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +      L    M +       +PL+        +
Sbjct: 902 ERDAVDALVRREMAAAHE--LSVPLEVSVGYGASW 934


>gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
 gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C]
          Length = 878

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 93/654 (14%), Positives = 167/654 (25%), Gaps = 140/654 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDP-VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
           +    F  +     L         +   ++    +  V    HN+  +   L+   + D+
Sbjct: 338 IEALGFSVEAGN-YLLPLGAADLEILAGVRRLFADAAVAKHMHNAK-D--FLRWAPDFDL 393

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
             +    ++V A           L+ V                L+             D 
Sbjct: 394 A-NICFDSMVAAYLVNPLAANQQLEDVVHQYL----------NLVLVPDGPAAPATAADC 442

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
            +  +         Y         E+    +     E  L  +   +   G  VD     
Sbjct: 443 IRRLYPVLRAELRGY---------ELDYLFD---RVELPLTRVLADMELAGVAVDRDQLE 490

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
            L++       +L   + +L      +     +L   LF + GL     T+   +T   V
Sbjct: 491 ALSEEFGTRAGELAARICTLAG-EDFNLNSPRQLGYILFEKLGLPAGKKTKTGYSTDAGV 549

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321
           L    +    A  +   R    +      + L   ++   GRL  TL     + TGR S 
Sbjct: 550 LLDLAEKHEIAALLLEYRQ-LIKLKTTYADGLAALVDPATGRLHTTLHQ-TVTNTGRLSS 607

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380
                QN+P                                 +R   I     + L+ AD
Sbjct: 608 AEPNLQNIPIRMEEGRR-------------------------IRKVFIPRDPARVLLTAD 642

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA ++G+   + AF   +D++  T A  F V    VT + R+  K +   + 
Sbjct: 643 YSQIELRILAHLSGDPALITAFRDEQDIHARTAAEVFGVPLEMVTPEMRSRAKAVNFGII 702

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y               L +                   + +      +  E       + 
Sbjct: 703 YGIS-----DFGLARDLKVTRAEAREYIQRYFARLPGVKEYIDTAIRSARERGYVTTALN 757

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
               R        +  V        +A   T   G A                       
Sbjct: 758 R--RRPLPELFSANHTVRSFG---ERAAVNTPIQGTAADII------------------- 793

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                  L    +           R   R                    L   M+     
Sbjct: 794 ------KLAMVKIH---------ARMRERN-------------------LKTLMI----- 814

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                L VHDE++ + P  +    + L    M +       +PL  +      +
Sbjct: 815 -----LQVHDELLFDVPAEEVCTVAPLVKAEMETVLP--LNVPLTVDLKIGHNW 861


>gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
 gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4]
          Length = 875

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 86/668 (12%), Positives = 198/668 (29%), Gaps = 153/668 (22%)

Query: 35  FGFDDHPVEL------WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FN 85
           +  D+ PV             +  + +  KE  E+ D+        F+          + 
Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVDLVESFKEEFESKDINK----LSFDIKPCIYHLMRYG 383

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYD 144
           +DI  + +   +++           ++               ++I    K  E       
Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSM----------ERSDPKVIGYDFKPLEDITGKGK 432

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQTINDR 195
             K       +    Y    +  T ++++++  +  ++           L  +   +   
Sbjct: 433 SKKTILESDEKEIDNYIVKYMMFTNKLYEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFT 492

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G CV       + ++ + E   ++  +E L    + +    ++L   LF +  L +    
Sbjct: 493 GVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKKN 551

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T Q VL +          +   R   ++     ++ +V+ +  DG++  T Q   
Sbjct: 552 KTGPSTDQEVLEALSGRHEIIDYILRYR-TITKLKTTYIDGMVDLIKKDGKIHTTFQQTI 610

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
           A +TGR S      QN+P  +                              +R   + S 
Sbjct: 611 A-QTGRISSTNPNLQNIPIRTEEGR-------------------------LIRKAFVPSG 644

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  L+ AD + IE RVLA +A ++  + AF+ G D++  T +  F V   +VT  QR+  
Sbjct: 645 GNVLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNA 704

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   +                G+   + +  +                          
Sbjct: 705 KAVNFGIV--------------YGIGDYSLSKDLHI------------------------ 726

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                      +   + +   +  + +   ++    ++                      
Sbjct: 727 ------TRKEAKEYIENYLDTYKGIKQYMEDIVAIGKE---------------------- 758

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                  +     R     ++ +             R            +Q  + DI+  
Sbjct: 759 ----KGYVETIMNRRRYIPELKSKN---YNVRSFGERVA------LNTPIQGSAADIIKV 805

Query: 613 GMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA 665
            M+         K    ++L VHDE++ + P  +      ++  +MT        + +  
Sbjct: 806 AMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDV 865

Query: 666 EGYESKRY 673
               +  +
Sbjct: 866 NS--ADNW 871


>gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
 gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603]
          Length = 893

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/681 (13%), Positives = 180/681 (26%), Gaps = 135/681 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTI 68
           TR P+ L   G    +        A         +             L++ L +     
Sbjct: 326 TRQPMGLAVAGKGVPSR-GTAWQIALSATPESAVVVTLDELSDADSVALRQWLMDPHYPK 384

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEE 125
           + H++      L +     +       T + A           L+ +            +
Sbjct: 385 IVHSAKEAWHALHSFSG-GVK-GVIADTELAAYLAFPDQRSYGLEDLSIRY-----VSRD 437

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
              +  +             +                  +                E  L
Sbjct: 438 ITPVAHQAQGSLDLGLDDTDDALRALANRAAVLPQLAQALDAELSDRSLTALYQEMELPL 497

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   +   G  VD+    +L+     + ++  +         V +    ++L+  LF 
Sbjct: 498 TVVLAQMEHVGVAVDLEQLRSLDAFFAHQGSEAQKAAFEAIGRQV-NLGSPKQLQEVLFD 556

Query: 246 ETGLHLEDLTET---TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           +  +      +T   T    L+    K   P    +   R  +++     +  L++++  
Sbjct: 557 QLDMPKTKKIKTGYTTDAASLADLFVKTGHPFLQHLLEYR-DSTKLRQT-VEGLLKSVAD 614

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DGR+  T Q   A+ TGR S      QN+P  + +                         
Sbjct: 615 DGRVHTTFQQTVAA-TGRLSSTDPNLQNIPIRTETGRR---------------------- 651

Query: 361 SDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   +  EG   L+ AD + IE R++A ++ +   + AF+ GEDL+    AR F V
Sbjct: 652 ---IRQGFVVGEGLDTLLTADYSQIEMRIMAHLSQDDGLISAFQAGEDLHNFVGARVFGV 708

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           +  +VT   R+  K M   L Y            +                         
Sbjct: 709 SIDEVTPQMRSKVKAMSYGLAYG-----LSAFGLSKQ----------------------- 740

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                     +   +  +   V +    +      T        
Sbjct: 741 ----------------LNISVGEASTLMDDYFTRFGGVRDYLTSVVARARTT-------- 776

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                                    GR     D+ ++            R          
Sbjct: 777 ------------------GYTETIMGRRRYLPDLTSDN---RQRRENAERVALNAP---- 811

Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMT 652
             +Q  + D++ + M+    A         ++L +HDE++ E    ++  A  +    M 
Sbjct: 812 --IQGSAADVIKQAMLGVDAAFRSEGLSSRLLLQIHDELIVEVAPGEQEIAERIVREEMA 869

Query: 653 SNPSWAKGLPLKAEGYESKRY 673
                   +PL       + +
Sbjct: 870 GAMQ--LSVPLAVSVGTGQNW 888


>gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
 gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1]
          Length = 875

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/594 (13%), Positives = 150/594 (25%), Gaps = 143/594 (24%)

Query: 94  ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
               +            +  A+ +A       + E K+             +  +   + 
Sbjct: 407 FDLGLAGYVLNSSVSEYSYDALLDAYCGG--VLPEAKDEAGSAAAQAAAARMLVKPLTDA 464

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                    Y   D                    L  +   +   G  VD      L   
Sbjct: 465 LGRDESKRAYFDID------------------LPLVAVLAIVERTGAAVDCDRLAELGAT 506

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRVLSSNK 267
              E  +L   +  +      +    ++L   LF   GL          +T   VL    
Sbjct: 507 TQAELDELRARIIEIAG-EEFNLDSPKQLGHILFEVLGLRTLKKNQRGYSTDAAVLKELS 565

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   V   R   ++     ++ L      DGR+         + TGR S      Q
Sbjct: 566 NDHEMPALVLRYR-ELAKIKSTYIDALPRMRADDGRVHTCFNETVTT-TGRLSSSEPNLQ 623

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEA 386
           N+P  +                              +R C +   +G K + AD + IE 
Sbjct: 624 NIPVRTEFGR-------------------------QIRECFVPLEKGHKFLSADYSQIEL 658

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA ++ ++  + AF +G D +  T +R F +    VT + R+  K +   + Y     
Sbjct: 659 RLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVEDVTPELRSRAKAVNFGIVYGQ--- 715

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             Q    +  L +             E +     +         E    +          
Sbjct: 716 --QAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAETMF------- 766

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                                              ++R +P +                 
Sbjct: 767 ----------------------------------GRKRHIPELKAANATQRGF------- 785

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                     R+ +N                    +Q  + DI+   M    +       
Sbjct: 786 --------GERTAMNHP------------------MQGSAADIIKLAMTEVQRRIMERGF 819

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
              ++L VHDE+    P+ +    S +   +M         +PL  +   +  +
Sbjct: 820 EAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEHIVD--LRVPLDVDVSYADNW 871


>gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
 gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA]
          Length = 875

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/594 (13%), Positives = 150/594 (25%), Gaps = 143/594 (24%)

Query: 94  ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
               +            +  A+ +A       + E K+             +  +   + 
Sbjct: 407 FDLGLAGYVLNSSVSEYSYDALLDAYCGG--VLPEAKDEAGSAAAQAAAARMLVKPLTDA 464

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                    Y   D                    L  +   +   G  VD      L   
Sbjct: 465 LGRDESKRAYFDID------------------LPLVAVLAIVERTGAAVDCDRLAELGAT 506

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRVLSSNK 267
              E  +L   +  +      +    ++L   LF   GL          +T   VL    
Sbjct: 507 TQAELDELRARIIEIAG-EEFNLDSPKQLGHILFEVLGLRTLKKNQRGYSTDAAVLKELS 565

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                   V   R   ++     ++ L      DGR+         + TGR S      Q
Sbjct: 566 NDHEMPALVLRYR-ELAKIKSTYIDALPRMRADDGRVHTCFNETVTT-TGRLSSSEPNLQ 623

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEA 386
           N+P  +                              +R C +   +G K + AD + IE 
Sbjct: 624 NIPVRTEFGR-------------------------QIRECFVPLEKGHKFLSADYSQIEL 658

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA ++ ++  + AF +G D +  T +R F +    V+ + R+  K +   + Y     
Sbjct: 659 RLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVEDVSPELRSRAKAVNFGIVYGQ--- 715

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             Q    +  L +             E +     +         E    +          
Sbjct: 716 --QAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAETMF------- 766

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                                              ++R +P +                 
Sbjct: 767 ----------------------------------GRKRHIPELKAANATQRGF------- 785

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                     R+ +N                    +Q  + DI+   M    +       
Sbjct: 786 --------GERTAMNHP------------------MQGSAADIIKLAMTEVQRRIMERGF 819

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
              ++L VHDE+    P+ +    S +   +M         +PL  +   +  +
Sbjct: 820 EAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEHIVD--LRVPLDVDVSYADNW 871


>gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP]
 gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP]
          Length = 897

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/600 (14%), Positives = 164/600 (27%), Gaps = 148/600 (24%)

Query: 85  NLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             D+        L+LA      +  + AV +   L +                       
Sbjct: 431 GGDVTPG--DDPLLLAYLLDPANTAMPAVAKRY-LDTD--------------WPEDAGTR 473

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
                   E      +  +       +++  +E   S       +   +  RG  +D   
Sbjct: 474 AAIAAQLLELLPPQLDAAR------LKLYTEVEKPLSG------VLARMEARGVRLDSEY 521

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TT 258
              L+  +     +L+ ++         S R  ++L+  L+ E GL     T+     +T
Sbjct: 522 LQGLSLALAERLERLEAQIHEAAG-REFSIRSRDQLEAVLYDELGLASGKKTKLTGKRST 580

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
               L   +   P    +   R    +     L+ L   +N       T     A  TGR
Sbjct: 581 AMTALEPLRDEHPIIPLILEYR-ELEKLRGTYLDPLPRLVNPRTGRLHTTFAQTAVATGR 639

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
            S      QN+P  S                              +R   IA  G +LV 
Sbjct: 640 LSSLNPNLQNIPIRSEEGR-------------------------QIRKGFIADGGFRLVA 674

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + +E R++A +AG++   +AF+ G D++  T A+   +  + V  +QR   K +   
Sbjct: 675 ADYSQLELRLMAHIAGDEPMQRAFQEGADIHRRTAAQVLGLDESTVDVNQRRAAKTVNF- 733

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            G++                                  + E   
Sbjct: 734 -------------GVLYGMS------------------------------AHRLSNELGI 750

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                    + +   +  +      + +  E   ++G                       
Sbjct: 751 PYAEATSFIENYFGIYPGIQRY---IEETLEFGRQHGYVETLY----------------- 790

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM--- 615
                 GR     ++               R            +Q  + DI+   M+   
Sbjct: 791 ------GRRRYVPELKARN---RNLREAGERLAYNMP------IQGTAADIMKMAMVALE 835

Query: 616 -NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                 G  ++L VHDE++ E P       + L   +M         +PL  E   S  +
Sbjct: 836 PQLDALGARMLLQVHDELLIEAPADRAEEVAALTRQVMEGVVE--LNVPLAVEAGISDNW 893


>gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
 gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986]
          Length = 880

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/599 (14%), Positives = 172/599 (28%), Gaps = 131/599 (21%)

Query: 91  HRWICTLVLARSNGL---PSALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYD 144
             +    V A           ++ +        +SS+    GK  ++   K    +    
Sbjct: 393 KNFYDLSVAAYLINPLKDSYFVEDIARDYMGSGVSSKAEMIGKSKLSEVLKFNDEKAEKY 452

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               ++   +       K +      ++       + E  L Y    + + G  VD    
Sbjct: 453 FASESYVALFASDYLLKKLNELELTRLY------ENVELPLIYSLARMENTGVRVDEKRL 506

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
                 +  + +KL+  +         +    ++L   LF +  L     T+   +T   
Sbjct: 507 KDYADTLLEKISKLEASIIDKAG-ESFNINSPKQLGEILFGKLKLSGGKKTKTGYSTAAD 565

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL            +   R   ++        L   +  DGR+ G+      + TGR S 
Sbjct: 566 VLEKLAPEHEIIRDILEYRQ-LTKLNSTYATGLAGYIRDDGRIHGSFNQ-TITATGRISS 623

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+P  +                          +   +R   +   G   V AD 
Sbjct: 624 TDPNLQNIPVRTE-------------------------MGSKIRDIFVPKPGYVFVDADY 658

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA M+G++  ++++ T  D++  T A+ F+V   +VT + R   K +      
Sbjct: 659 SQIELRVLASMSGDEKLIESYHTAADIHAATAAQVFHVPLDKVTPELRRNAKAVNF---- 714

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         G++                                  + +      
Sbjct: 715 ----------GVVYGIS------------------------------AFGLSEDLSISRK 734

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                   + + +  V      L +      E G                          
Sbjct: 735 EALDYINNYFKIYEGVKRF---LDKQVADAKEKGYVKTM--------------------- 770

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620
              GR     ++ ++     +   +             + +Q  + DI+   M+   +A 
Sbjct: 771 --FGRIRPIPEIKSSNFMTRSFGDR---------VAMNSPIQGSAADIMKIAMIRVDEAL 819

Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
                  +IVL +HDE++ E    + +    +    M    S    +PL+ + +  K +
Sbjct: 820 NKSGFDANIVLQIHDELLVEVRKDEVYKVKEIVERSMREAVS--LKVPLEVDAHIGKTW 876


>gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
 gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741]
          Length = 892

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/672 (15%), Positives = 216/672 (32%), Gaps = 118/672 (17%)

Query: 12  SPIDLTKCGICKYAED---VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           S  D     +    E+     +I F+   DD    L     D +  + +K  LE+ +V +
Sbjct: 325 SDNDEIVFNLEIDGENYHTAEIIGFSIKIDDK--YLVSDDIDLLKKKQIKNLLESDEVEV 382

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
              +   +   L     + +        L+++           +G   +       E  E
Sbjct: 383 DLFDGKRQYVGLNR-LGVTLSKIN-FDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDE 440

Query: 129 LIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
            I  + KG  H    D+     H           K  +    E  ++L+  +  E+ L  
Sbjct: 441 QI--YGKGAKHAVPKDKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSI 498

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  VD     T+   +    ++L+QE+ +       +    ++L   LF + 
Sbjct: 499 VLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG-EEFNLNSPKQLGVILFEKL 557

Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            L +   T+   +T   VL   + ++P    +   R   ++     +  L++ ++     
Sbjct: 558 KLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQ-LAKIQSTYIEGLLKVVSKKDGK 616

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             T      + TGR S      QN+P       +                         +
Sbjct: 617 AHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRK-------------------------I 651

Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422
           R   + S  G ++  +D + IE RVLA ++ ++   +AF+ G D++ +T  R FNV  P 
Sbjct: 652 RQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPD 711

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT + R   K +   + Y            +  + ++        ++  + +   +++ 
Sbjct: 712 EVTPNMRRQAKAVNFGIVYGIS-----DYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYM 766

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
             + E   E+   +                                             +
Sbjct: 767 EKIVEFAKENGYVETIF-----------------------------------------NR 785

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +P +  +                        R+ +N+  +          K+    +
Sbjct: 786 RRYLPDIKSRNFNLRSF---------------AERTAMNSPIQG---SAADIIKVAMINM 827

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL 661
           Q    ++L E           ++L VHDE++ E P  +      +   +M S       +
Sbjct: 828 Q----EMLKE-----KNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAVK--LDV 876

Query: 662 PLKAEGYESKRY 673
           PLK E    + +
Sbjct: 877 PLKVESKHGQTW 888


>gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
 gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum
           WAL-14163]
 gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673]
          Length = 890

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/675 (13%), Positives = 186/675 (27%), Gaps = 150/675 (22%)

Query: 18  KCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALEN-TDVTIVAHNS 73
           + G+    E+  V   A  + +  +             + + ++E       V+++  + 
Sbjct: 321 EAGMQLVIENGQVAAMALCYGEEKIYSIPAAGFITGEYLAERMEELCTAVPSVSVL--DL 378

Query: 74  YFERTVLKACFNLDIPIHR-------WICTLVLARSNGL---PSALKAVGEALKLSSQKM 123
             +   LK      +                V                +          +
Sbjct: 379 KPQLPYLKNRDRRVVDGSGNDGGSEAMFDAGVAGYLLNPLKDTYDYDDLARDY--LDMTV 436

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-----TVTREIFKRLEPL 178
               +L+ +          +        +  +    Y           + +++       
Sbjct: 437 PSKADLMGKTS--------FTAAFDMMPDKAQTCVCYMAYVAWKAKPELVKKLEASGMRK 488

Query: 179 SSKEQELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E+  +     + + G CV         + + V+  KL+QE+   T     +    
Sbjct: 489 LFFDIEMPVIYSLYHMQEEGICVRREELRCYGERLKVQIDKLEQEIYQDTET-EFNINSP 547

Query: 237 EKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF    +     T+   +T   VL       P   +V + R   ++      + 
Sbjct: 548 KQLGEILFDRMKMPGGKKTKTGYSTAADVLEKLAPEYPVVRKVLDYRQ-LTKLKSTYADG 606

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   +  DGR+ GT      + TGR S      QN+P       E               
Sbjct: 607 LAAFIREDGRIHGTFNQ-TITATGRISSTEPNLQNIPVRMELGRE--------------- 650

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                     +R   +  EG  L+ AD + IE RVLA M+G++  + A+   ED++  T 
Sbjct: 651 ----------IRKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAITA 700

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +  F+V   +VT  QR   K +                    G++               
Sbjct: 701 SEVFHVPLEEVTPLQRRNAKAVNF--------------GIVYGIS--------------- 731

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                              + +              + + +  V +  + L +  ++   
Sbjct: 732 ---------------AFGLSEDLSISRKEALEYINRYFETYPEVKKFLDHLVELGKE--- 773

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                                     +    GR     ++ +      +      R    
Sbjct: 774 -----------------------QGYVETMFGRRRPIPELKSANFMQRSF---GERVAMN 807

Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML 647
                   +Q  + DI+   M+         K    +VL VHDE++ ET   +      +
Sbjct: 808 SP------IQGTAADIIKIAMIRVDQRLRKEKLRSRLVLQVHDELLIETWTDELEKVQKV 861

Query: 648 -YHLMTSNPSWAKGL 661
               M +       L
Sbjct: 862 LEEEMKNAAHLKVEL 876


>gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032]
 gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032]
          Length = 880

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/657 (13%), Positives = 192/657 (29%), Gaps = 137/657 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            A         L D        +  L   L + D   + H +     +L      ++   
Sbjct: 340 LAIADTKRHAVLVDVADISAEDEKALATWLASED-PKMLHGAKAAYHMLA-GRGFELH-G 396

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T + A           + +      + ++          +    +   D++  +  
Sbjct: 397 VVHDTAIAAYLLRPGQRTYELADVY---QRHLQRQLSTNDNGGQLTLLDAADDQSLVDDV 453

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQ 209
            A     E       +T+++ +        + E+    +   +   G  VDVA      +
Sbjct: 454 IAILELSE------ELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLK 507

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
               +  + ++    L      +    ++L+  LF   G+     T+   +T    + + 
Sbjct: 508 TFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEAL 567

Query: 267 --KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K   P    +  +R    +     L  L+  +  DGR+  T     A  TGR S    
Sbjct: 568 AIKNPHPFLDHLLAHRQY-QKMKTT-LEGLIREVAPDGRIHTTFNQTVA-STGRLSSTDP 624

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAG 383
             QN+P  + +  +                         +RS  +  EG   L+ AD + 
Sbjct: 625 NLQNIPVRTEAGRK-------------------------IRSGFVVGEGYETLLTADYSQ 659

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RV+A ++ +   ++A+  GEDL+    ++ FNV    VT + R   K M   L    
Sbjct: 660 IEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLV--- 716

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+    +  +   +                                 
Sbjct: 717 -----------YGLSAFGLSQQLSIPAG------------------------------EA 735

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +++ +++ ++   V     E+ +   +                                 
Sbjct: 736 KQIMESYFERFGGVQRYLREIVEEARKA--------------------------GYTETL 769

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
            GR     ++ ++            R            +Q  + DI+   M+   ++   
Sbjct: 770 FGRRRYLPELTSDN---RVARENAERAALNAP------IQGTAADIIKVAMIRVDRSLKE 820

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE+V E    +      +    M +       +PL+    +   +
Sbjct: 821 AAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEVSAGDGVNW 875


>gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243]
 gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243]
          Length = 875

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/601 (13%), Positives = 152/601 (25%), Gaps = 143/601 (23%)

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           ++   R     +            +  A+ +A       + E K+             + 
Sbjct: 400 ELMGMRAFDLGLAGYVLNSSVSEYSFDALLDAYYGG--VLPETKDEAGAVAAQAAAARML 457

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
                +          Y   D                    L  +   +   G  VD   
Sbjct: 458 VGPLTDALGRDESKRAYFDID------------------LPLVAVLAIVERTGAAVDCDR 499

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQ 260
              L      E  +L   +  +      +    ++L   LF   GL          +T  
Sbjct: 500 LAELGATTQAELDELRARIIEIAG-EEFNLDSPKQLAHILFEVLGLRTLRKNQRGYSTDA 558

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL            V   R   ++     ++ L      DGR+  +      + TGR S
Sbjct: 559 AVLKELSNDHELPALVLRYR-ELAKIKSTYIDALPRMRADDGRVHTSFNETVTT-TGRLS 616

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379
                 QN+P  +                              +R C +   EG   + A
Sbjct: 617 SSEPNLQNIPVRTEFGR-------------------------QIRECFVPLEEGHAFLSA 651

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA ++ ++  + AF +G D +  T +R F +    V+ + R+  K +   +
Sbjct: 652 DYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVEDVSPELRSRAKAVNFGI 711

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y       Q    +  L +             E +     +         E    +   
Sbjct: 712 VYGQ-----QAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAETMF 766

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                                                     ++R +P +          
Sbjct: 767 -----------------------------------------GRKRHIPELKAANATQRGF 785

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                            R+ +N                    +Q  + DI+   M    +
Sbjct: 786 ---------------GERTAMNHP------------------MQGSAADIIKLAMTEVQR 812

Query: 620 A------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672
                     ++L VHDE+    P+ +    S +   +M         +PL  +   +  
Sbjct: 813 RIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEHIVD--LRVPLDVDVSYADN 870

Query: 673 Y 673
           +
Sbjct: 871 W 871


>gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
 gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC
           29176]
          Length = 871

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/590 (13%), Positives = 162/590 (27%), Gaps = 136/590 (23%)

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
              +V A       +               E+   LI    +  T  C          E 
Sbjct: 404 FDVIVAAYLLNPLKS------DYDYEDVAREQLGLLIDEKTEESTKACYEAYTAYMAVEP 457

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
                           E     +     E  L +    +   G  V+          +  
Sbjct: 458 LNRK-----------MEETGMTKLFREIEMPLVFTLYEMEQAGIHVEGEALKAYGDQLGN 506

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270
              +L++E+  +      +    ++L   LF +  +     T+   +T   VL       
Sbjct: 507 RIVELEKEIYDMAG-ETFNINSPKQLGVILFEKLEMPHAKKTKTGYSTAADVLDKLAPEY 565

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P   ++   R   ++      + L   +  DGR+ G       + TGR S      QN+P
Sbjct: 566 PIVAKILEYRQ-LTKLKSTYADGLATFIGPDGRIHGKFNQ-TITATGRISSTEPNLQNIP 623

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
                                            +R   +  EG   V AD + IE R+LA
Sbjct: 624 VRMELGR-------------------------LIRKVFVPKEGCVFVDADYSQIELRILA 658

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
             +G++  ++A+    D++  T ++ F+V   +VT  QR   K +   + Y         
Sbjct: 659 HCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNFGIVYG-----ISS 713

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
              +  L+                                              R  + +
Sbjct: 714 FGLSQDLS---------------------------------------ITRKEAARYIEHY 734

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            + +  +    ++     ++    G A+                          GR    
Sbjct: 735 FETYPGIKTFLDQCVADAKE---KGYAVTL-----------------------FGRRRPV 768

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDI 624
            ++ ++     +      R            +Q  + DI+   M+              +
Sbjct: 769 PELKSSNFMQRSF---GERVAMNAP------IQGTAADIIKIAMIRVSDEMKKQNMKSRM 819

Query: 625 VLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           +L VHDE++ E  + +      +    M    S    +PL A+ +  K +
Sbjct: 820 ILQVHDELLIEAAEEEVDEVKKILKEEMEHAAS--LSVPLLADMHTGKNW 867


>gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e]
 gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e]
          Length = 461

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 143/441 (32%), Positives = 222/441 (50%), Gaps = 18/441 (4%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L++D ET S  DL K G   YAE     +++  + FD+ PV++WD      MP+ L+
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            A+      ++++ +V  N   F+R V+K C+  ++ +   I T+++A  + LP +L A+
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 GEALKLS--SQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +     K + GK LI RF K         R     H + W  F  Y K D+T  R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E++K++     S  E  + +LDQ INDRG+ VDVALA    + V   + +L +E +    
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
           G ++    L  L+          + +  ++T   +L+  + L   A  +   R+ A+ +A
Sbjct: 241 GSLTGKDFLPILQELAPAH---RIHNAQKSTLNDLLAD-EDLPDDARTIIEMRLGAASTA 296

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH-L 346
             K   L+   +SD R RG LQ+ GA RT RW+G  F PQNL R     +ELD+ I   L
Sbjct: 297 STKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALL 356

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D  ++ +  VRSC+I   G+K VVAD + +E R LAW+AGE+  L  F  G 
Sbjct: 357 KGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGL 416

Query: 407 DLYVTTYARSFNVAPAQVTKD 427
           D+Y  T  + F + P  + K+
Sbjct: 417 DIYCVTAGKMFGMDPDDIKKE 437


>gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
 gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928]
          Length = 905

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/667 (14%), Positives = 186/667 (27%), Gaps = 143/667 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNL 86
             V   AF   D      D        +  L   L +     + H++      L      
Sbjct: 356 GDVSGLAFATADGTAAYVDATQLDPADETALAAWLADPARQKILHDAKGPSLALA-ARGF 414

Query: 87  DIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
            +       T + A           L+ + E           G+ L              
Sbjct: 415 TLAGVA-ADTALEAYLAQSGRRSFDLEPLAEE--------VLGRRLSPAGADENQGTLFA 465

Query: 144 DRNKPNHREAWRLFGEYCKGD-VTVTR-EIFKRLEPLS--SKEQELWYLDQTINDRGYCV 199
           D +        ++   +   D     R ++ +          E  L  +   +   G  +
Sbjct: 466 DED---AEAERQMAAAHAVLDLADALRGKLAETGAEQLLTDIELPLVGVLAEMEQVGIAI 522

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257
           D  L   L +    E  K      +       +    ++L+  LF   G+      +T  
Sbjct: 523 DERLFQDLEKGFSGEAAKEVDAARAEAGVETLNLGSPKQLQEVLFENLGMPKTKKIKTGY 582

Query: 258 -TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
            T    L+  +     P    +       +R     +  L ++++ D R+  T   + A+
Sbjct: 583 TTDADSLAWLQAQTQHPFLDHLLR-WREVNRLK-TVVEGLSKSVSPDTRIHTTYNQMIAA 640

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S      QN+P  +                              +R   IA  G 
Sbjct: 641 -TGRLSSVDPNLQNIPIRTLEG-------------------------QQIRKAFIAGPGY 674

Query: 375 K-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           + L+ AD + IE R++A ++ +   ++AF +GEDL+ T  A+ F+V    V  + R   K
Sbjct: 675 ESLMTADYSQIEMRIMAHLSEDAGLIEAFTSGEDLHNTVAAKVFDVEATAVEPEHRRRIK 734

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            M   L                GL+    +  +   +                       
Sbjct: 735 AMSYGL--------------AYGLSAFGLSQQLGIETG---------------------- 758

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                      ++ + + Q+   V +  ++L     Q    G                  
Sbjct: 759 --------EAAKMMEDYFQRFGGVRDYLHDL---VVQARATGYTETM------------- 794

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                      GR     D+ ++            R            +Q  + DI+   
Sbjct: 795 ----------FGRRRYLPDLASDN---RQRREMAERMALNAP------IQGSAADIIKVA 835

Query: 614 MMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
           M+   +          ++L VHDE+V E    +      L    M S       +PL   
Sbjct: 836 MIRVREGLREQQLKSRMLLQVHDELVLEIAPGEAPRVEELVRREMGSAAE--LRVPLDVS 893

Query: 667 GYESKRY 673
              ++ +
Sbjct: 894 VGMAENW 900


>gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
 gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum]
          Length = 1334

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 104/800 (13%), Positives = 200/800 (25%), Gaps = 221/800 (27%)

Query: 2    ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-------GFDDHPVELWDCV---HDP 51
                 D ET   IDL K           +I F+         FD +     D +   +  
Sbjct: 624  KYHACDTETI-AIDLKKVSP---IGHGRMICFSIYCGPDVKFFDGNTRLWVDVMDDINGE 679

Query: 52   VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------ 105
             + Q  KE  E+  +  V HN  F+R +     N+++       TL +AR          
Sbjct: 680  AVLQEFKEYFEDESILKVWHNYAFDRHIFYNH-NINVKGFG-GDTLHMARLWNAARQNSG 737

Query: 106  PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE--------AWRLF 157
              +L+A+   L   ++     K+L     K         +               +   +
Sbjct: 738  GYSLEALCREL--LNKTKTPIKDL--FGQKKIKANGEAGKAITIPPLQRIQRDRRSILDW 793

Query: 158  GEYCKGDVTVTREIFKRLEPLSS----------------KEQELWYLDQTINDRGYCVDV 201
             EY   D  +T  + + L                       +   +L   +  RG  +D+
Sbjct: 794  IEYSSLDSELTWSLRENLHMKLEDMVWTQNSTMWDFYYLNWRPFGHLLTEMEQRGMKIDI 853

Query: 202  ALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF------------ 244
                 L      +  +          +        +     +++  LF            
Sbjct: 854  DYLKNLESTAFKDMEENRNRFISWASKHSEGAKYMNPDSDAQIQQLLFAPVTNKKTKEEM 913

Query: 245  --------------LETGLHLEDLT--------------------ETTCQRVLSSNKKLT 270
                          +E G                            +     L      +
Sbjct: 914  PKSKDFETENVEGIIEEGRTKPKKNMSFILDGLGFPSNSVTTSGWPSVDASALRELAGKS 973

Query: 271  PQAIQVFNNRM-------------RASR-----------------SAVLKLNTLVEAMNS 300
            P+  +                      +                      +  L +  + 
Sbjct: 974  PENGKFGTAYQFFVDKSENKEEGEALGKEACLAIASLLELGTIGTLLNTFIIPLQKLADK 1033

Query: 301  DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
            + RL  ++     + TGR S      QN P                          L+  
Sbjct: 1034 NSRLHTSVNVN--TETGRLSSRKPNLQNQP-------------------------ALEKD 1066

Query: 361  SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +R       G  L+VAD   +E R+LA +   +  + AF+ G D +  T        
Sbjct: 1067 RYKIRKAFTCEPGNTLIVADYGQLELRLLAHITNCKSMISAFKVGGDFHSRTAMGM---- 1122

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                    +      E+ L +              G        L    ++        N
Sbjct: 1123 ----YPHVKEAVDKGEVLLEWD-------------GDGEPPKPLLKNIFASERRKAKTLN 1165

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
            F     +     + +        +     W +    V     +                 
Sbjct: 1166 FSIAYGKTAHGLSTDWGVTLKEAQETLNRWYEDRPEVLVWQRKTIATAHSHK-------- 1217

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                    GR     D+ N+   +        R           
Sbjct: 1218 ------------------WTRTLMGRYRHLPDIDNSAKGMKNH---AERASINTPL---- 1252

Query: 601  IVQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTS 653
              Q  + DI+ + M+         + GY +++ +HDE++ E P+ +   A  L  +LM++
Sbjct: 1253 --QGGAADIVMKAMLIIEDNKRIKELGYKLIMQIHDELILEGPEENADEARGLVMNLMSN 1310

Query: 654  NPSWAKGLPLKAEGYESKRY 673
              +    + L  +   +K +
Sbjct: 1311 PLTTPLLIDLVVDCRYAKTW 1330


>gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118]
 gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118]
          Length = 892

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 103/672 (15%), Positives = 215/672 (31%), Gaps = 118/672 (17%)

Query: 12  SPIDLTKCGICKYAED---VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           S  D     +    E+     +I F+    D    L     D +  + +K  LE+ +V +
Sbjct: 325 SDNDEIVFNLEIDGENYHTAEIIGFSIKIGDK--YLVSDDIDLLKKKQIKNLLESDEVEV 382

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
              +   +   L     + +        L+++           +G   +       E  E
Sbjct: 383 DLFDGKRQYVGLNR-LGVTLSKIN-FDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDE 440

Query: 129 LIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
            I  + KG  H    D+     H           K  +    E  ++L+  +  E+ L  
Sbjct: 441 QI--YGKGAKHAVPEDKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSI 498

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  VD     T+   +    ++L+QE+ +       +    ++L   LF + 
Sbjct: 499 ILANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG-EEFNLNSPKQLGVILFEKL 557

Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            L +   T+   +T   VL   + ++P    +   R   ++     +  L++ ++     
Sbjct: 558 KLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQ-LAKIQSTYIEGLLKVVSKKDGK 616

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             T      + TGR S      QN+P       +                         +
Sbjct: 617 AHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRK-------------------------I 651

Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422
           R   + S  G ++  +D + IE RVLA ++ ++   +AF+ G D++ +T  R FNV  P 
Sbjct: 652 RQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPD 711

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT + R   K +   + Y            +  + ++        ++  + +   +++ 
Sbjct: 712 EVTPNMRRQAKAVNFGIVYGIS-----DYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYM 766

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
             + E   E+   +                                             +
Sbjct: 767 EKIVEFAKENGYVETIF-----------------------------------------NR 785

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +P +  +                        R+ +N+  +          K+    +
Sbjct: 786 RRYLPDIKSRNFNLRSF---------------AERTAMNSPIQG---SAADIIKVAMINM 827

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL 661
           Q    ++L E           ++L VHDE++ E P  +      +   +M S       +
Sbjct: 828 Q----EMLKE-----KNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAVK--LDV 876

Query: 662 PLKAEGYESKRY 673
           PLK E    + +
Sbjct: 877 PLKVESKHGQTW 888


>gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
 gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC
           49176]
          Length = 961

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/516 (15%), Positives = 156/516 (30%), Gaps = 121/516 (23%)

Query: 170 EIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           E+         KE E+  +     + +RG  ++    H  ++ +DV     ++E+  +  
Sbjct: 551 ELSNLGMENLYKEIEMPLVSTLYEMEERGIKLNKEELHEYSEELDVLIKNYEEEIYKMAG 610

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    ++L   LF +  L     T+   +T   VL   +   P   +V N R   +
Sbjct: 611 -EEFNINSPKQLGVILFEKLRLPYGKKTKTGYSTSADVLERIRLEDPIVERVLNYRQ-VA 668

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +      + L   +  DGR+   L  L  + TGR S      QN+P              
Sbjct: 669 KLKSTYTDGLEGYVKEDGRIHCKLNQLV-TATGRLSSTEPNLQNIPIR------------ 715

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                          +   +R   +  EG   V AD + IE R++A ++G++  +KA++ 
Sbjct: 716 -------------MELGKRIRKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQG 762

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            ED++  T +  F V   +VT  QR   K +                    G++      
Sbjct: 763 EEDIHRITASHVFGVPLDEVTDLQRRNAKAVNF--------------GIIYGISSFGL-- 806

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                  E+    + + + +V +  + L
Sbjct: 807 ----------------------------GENLGISRKDAEKYINDYFKAYPQVKKYLDSL 838

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +   +                             +    GR     ++ +N        
Sbjct: 839 VETGIE--------------------------KGFVKTYFGRIRPIPELNSNNFMKRQF- 871

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPD 638
               R            VQ  + DI+   M +             ++L +HDE++ E  +
Sbjct: 872 --GERIAMNSP------VQGTAADIIKIAMNSVNARLKSEFPDSRLLLQIHDELLIEAKE 923

Query: 639 TDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            D+   +  L   M         + L  +      +
Sbjct: 924 EDKEAVAKLLKEEMMKAAE--LKVKLSVDVKFGYNW 957


>gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334]
 gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334]
          Length = 889

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 102/670 (15%), Positives = 196/670 (29%), Gaps = 152/670 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKA 82
             ++ FA+   D             + Q    K+ LE T + +      ++     VL  
Sbjct: 344 ADLVGFAWSCGDK----LYATDKLELLQEPIFKDFLEKTPLRV------YDFKKAKVLLH 393

Query: 83  CFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
            F LD+       + +             + + ++     L   +   GK +     + E
Sbjct: 394 RFGLDLQ-APAFDSRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFYGKGVKKALPERE 452

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
                  R      E   +  E    +  +   ++         EQ L ++   +   G 
Sbjct: 453 KFLEHLARKLAVLVETEPILLEKLSENGQLEL-LY-------DMEQPLAFVLAKMEIAGI 504

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLT 255
            V       +    ++   KL QE+  L      +    ++L   LF + GL L     T
Sbjct: 505 TVKKETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYTKKT 563

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL     + P   ++ + R   ++     +  L + + +DG++        
Sbjct: 564 KTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD- 621

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P                                 +R   +   
Sbjct: 622 LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEW 656

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRR 716

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +                    G++    ++                          
Sbjct: 717 NAKAVNF--------------GVVYGISDFGLSN-------------------------- 736

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                        +     + ++   +    +E+ +                        
Sbjct: 737 ----NLGISRKEAKSYIDTYFERFPGIKNYMDEVVREARD-------------------- 772

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                    +     R     D+ +             R            +Q  + DIL
Sbjct: 773 ------KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADIL 817

Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPL 663
              M+   KA         ++L VHDEIV E P ++      L    M         +PL
Sbjct: 818 KIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQ--LSVPL 875

Query: 664 KAEGYESKRY 673
            A+  E   +
Sbjct: 876 IADENEGATW 885


>gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031]
 gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031]
          Length = 877

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYMQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713]
          Length = 892

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 103/672 (15%), Positives = 215/672 (31%), Gaps = 118/672 (17%)

Query: 12  SPIDLTKCGICKYAED---VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           S  D     +    E+     +I F+    D    L     D +  + +K  LE+ +V +
Sbjct: 325 SDNDEIVFNLEIDGENYHTAEIIGFSIKIGDK--YLVSDDIDLLKKKQIKNLLESDEVEV 382

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
              +   +   L     + +        L+++           +G   +       E  E
Sbjct: 383 DLFDGKRQYVGLNR-LGVTLSKIN-FDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDE 440

Query: 129 LIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
            I  + KG  H    D+     H           K  +    E  ++L+  +  E+ L  
Sbjct: 441 QI--YGKGAKHAVPKDKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSI 498

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  VD     T+   +    ++L+QE+ +       +    ++L   LF + 
Sbjct: 499 VLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG-EEFNLNSPKQLGVILFEKL 557

Query: 248 GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            L +   T+   +T   VL   + ++P    +   R   ++     +  L++ ++     
Sbjct: 558 KLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQ-LAKIQSTYIEGLLKVVSKKDGK 616

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             T      + TGR S      QN+P       +                         +
Sbjct: 617 AHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRK-------------------------I 651

Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422
           R   + S  G ++  +D + IE RVLA ++ ++   +AF+ G D++ +T  R FNV  P 
Sbjct: 652 RQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPD 711

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT + R   K +   + Y            +  + ++        ++  + +   +++ 
Sbjct: 712 EVTPNMRRQAKAVNFGIVYGIS-----DYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYM 766

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
             + E   E+   +                                             +
Sbjct: 767 EKIVEFAKENGYVETIF-----------------------------------------NR 785

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +P +  +                        R+ +N+  +          K+    +
Sbjct: 786 RRYLPDIKSRNFNLRSF---------------AERTAMNSPIQG---SAADIIKVAMINM 827

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGL 661
           Q    ++L E           ++L VHDE++ E P  +      +   +M S       +
Sbjct: 828 Q----EMLKE-----KNLQAKMLLQVHDELIFEAPTKEIPLLEDMVPKVMDSAVK--LDV 876

Query: 662 PLKAEGYESKRY 673
           PLK E    + +
Sbjct: 877 PLKVESKHGQTW 888


>gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 880

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/667 (13%), Positives = 185/667 (27%), Gaps = 155/667 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
             F +              +   + K+  E          + ++     VL +   +++ 
Sbjct: 339 IGFAWGHGEQIYASTDLSLLSTDLFKKVFEKPI-------ATYDFKRSKVLLSHLGIEL- 390

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           +       +                   +   ++     L                 K  
Sbjct: 391 VAPSYDARLANYLLS------------NVEDNELTTIARLFTDISLEADDSIYGKGVKRA 438

Query: 150 HREAWRLFGEYCKG-----DVTVT----REIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
             E   L G   +      D             +++     E  L  +   +   G  V+
Sbjct: 439 VPEKEVLLGHLARKVKVLLDSRAPMVEKLADHDQIDLYHEIELPLANVLAKMEIEGIKVN 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE-- 256
            A    + +   V    L QE+  +      +    ++L + LF +    L +   T+  
Sbjct: 499 RATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTG 557

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++
Sbjct: 558 YSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R     S E  
Sbjct: 616 TGRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDA 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGK 433
            L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K
Sbjct: 651 VLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAK 710

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   +                G++    ++                             
Sbjct: 711 AVNFGIV--------------YGISDFGLSN----------------------------- 727

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                     +     + +++  +      + +  +                        
Sbjct: 728 -NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKD----------------------- 763

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 764 ---KGYVETLFKRRRELPDINSRNF---NVRSFAERTAINSP------IQGSAADILKIA 811

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
           M+N   A         ++L VHDEIV E P+ +      L    M +    A  +PL+A+
Sbjct: 812 MINLDNALQAGGFKAKMLLQVHDEIVLEVPNDELTAIKKLVKDTMEAAVDLA--VPLRAD 869

Query: 667 GYESKRY 673
               + +
Sbjct: 870 ENAGQSW 876


>gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
 gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542]
          Length = 901

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/665 (15%), Positives = 175/665 (26%), Gaps = 138/665 (20%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNL 86
                 A           D           L + L +     V H        L +    
Sbjct: 351 GDAWALAIADGPGSAVALDLTDLSAADDTALSDWLSDPTRAKVVHGGKSVWHELASR-GY 409

Query: 87  DIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQK--MEEGKELIARFCKGETHEC 141
            +       T + A           L  + E               +       GE  E 
Sbjct: 410 SLE-GVVFDTELAAYLCFPDQRSYDLGDLAERHLHRELTPVDTSSDQGALDLSVGEDSEG 468

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
                +               GD             L+  E  L  +   +   G  +DV
Sbjct: 469 GRLAVRAAALTDLAEVLRGELGD-------RSAEPLLTELELPLSAVLVHMERHGIAMDV 521

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---T 258
                L Q      T        +    V +    ++L+  LF +  +      +T   T
Sbjct: 522 DYLRELEQHFGELVTGAAASAYEVIGREV-NLGSPKQLQEVLFDQLDMPKTKKIKTGYTT 580

Query: 259 CQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
               L+    K   P    + ++R          +  L++++  DGR+  T Q   A+ T
Sbjct: 581 DAAALADLFVKTEHPFLKFLLDHRDSTRLRQT--VEGLLKSVADDGRIHTTFQQTIAA-T 637

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-K 375
           GR S      QN+P  + +                            +R   +  +G   
Sbjct: 638 GRLSSTEPNLQNIPIRTEAGRR-------------------------IRRAFVVGDGYET 672

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++G++  ++AF TGEDL+    +R F V  + VT   R+  K M
Sbjct: 673 LLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVGSRVFQVETSAVTPAMRSKIKAM 732

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              L Y            +  LN++                                   
Sbjct: 733 SYGLAYG-----LSSFGLSNQLNID----------------------------------- 752

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                    ++ + +  +   V      +                               
Sbjct: 753 ----VKEASKLMEDYFTRFGGVRTYLAGVVDEAR-------------------------- 782

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
            N       GR     D+ ++            R            +Q  + DI+   M+
Sbjct: 783 ANGYTATIMGRRRYLPDLTSDN---RQRREMAERMALNAP------IQGSAADIIKVAML 833

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              K          ++L VHDE++ E    +    + L    M S       +PL     
Sbjct: 834 GVEKEIAVRGLRSRLLLQVHDELILEVGHGELEELTTLVREQMGSAADLL--VPLDVSVG 891

Query: 669 ESKRY 673
               +
Sbjct: 892 TGSSW 896


>gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford]
 gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford]
          Length = 872

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 88/632 (13%), Positives = 189/632 (29%), Gaps = 149/632 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++   L +  +  + ++      +LK   N    I       ++  +     + K    
Sbjct: 375 DIIFNLLADKSIKKITYSLK---PLLKFYANQSHKITAIEDLELMQYALSAGLSQK---- 427

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              L  + ++E   +I    K   +     +      +  + F  Y   D          
Sbjct: 428 --NLFEEALKE-DNIINESAKIVANFISLYKQTILALKDNKAFRLYSDID---------- 474

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                     + ++   +   G  VD    + L+     E + L++E+ +L+     +  
Sbjct: 475 --------LPICFILDKMEKTGIKVDANYLNQLSAEFGAEISILEEEIFALSGTK-FNIG 525

Query: 235 CLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             ++L   LF +  L            +T   +L    +       +     + ++    
Sbjct: 526 SPKQLGKILFEKMQLPFGKAAAKAISYSTAAEILEKLSEHGYNIADLLLRWRQLTKFKNT 585

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             ++L + +++  R   T     ++ TGR S      QN+P  SR   +           
Sbjct: 586 YTDSLPKQIDNITRRVHTTFLQTSTTTGRLSSQEPNLQNIPIRSREGNK----------- 634

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++
Sbjct: 635 --------------IRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAFINKDDIH 680

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T  + FN+   ++T + R   K +                    G++           
Sbjct: 681 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 715

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                  A +     +      K +  ++  V E   +      
Sbjct: 716 -------------------AFGLAKQLNVSNSEASEYIKKYFAEYKGVQEYMEQTKAFA- 755

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                                     +N  ++   GR      + + +       +   R
Sbjct: 756 -------------------------SSNGYVINFFGRKCFIPLIHDKK-----LKQFAER 785

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+N        K    +VL +HDE++ E P+ +   
Sbjct: 786 AAINAP------IQGTNADIIKIAMINLDQEIAKNKLKTRLVLQIHDELLFEVPEDEVEL 839

Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
              ++  +M +  S    +P+  E      + 
Sbjct: 840 VTPIIKKIMEN--STNMDVPIITEIRAGNNWM 869


>gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99]
 gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99]
          Length = 899

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 98/655 (14%), Positives = 191/655 (29%), Gaps = 139/655 (21%)

Query: 39  DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
           D      D     P     L E L +       H +      L       +       T 
Sbjct: 359 DGEGGYIDTATLTPDDDAALGEWLADPAKPKALHEAKLAIHDL-RGRGWTLN-GVTSDTA 416

Query: 98  VLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
           + A           L  +       +L ++  E+ +  +      +         +    
Sbjct: 417 LAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQQQLSLLDDDDTDVAAAQTAILRARAV 476

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                  +     +  T  +       +  E  + +L   +   G  VD+ +   L +  
Sbjct: 477 IDLADALDAELDRIDSTGLL-------TDMELPVQHLLAEMETAGIAVDLTMLGGLQRHF 529

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKK 268
             +     +   ++    + +    ++L+  LF E  +     T+T   T    L S   
Sbjct: 530 ADQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELRMPKTKRTKTGYTTDADALQSLFD 588

Query: 269 L--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
               P    +  +R   +R  V  ++ L+ ++  DGR+  T     A+ TGR S      
Sbjct: 589 KTGHPFLQHLLAHR-DVTRLKVT-VDGLLNSVADDGRIHTTFNQTIAA-TGRLSSTEPNL 645

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIE 385
           QN+P  + +                            +R   +  +G  +L+ AD + IE
Sbjct: 646 QNIPIRTDAGR-------------------------QIRDAFVVGDGYSELMTADYSQIE 680

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++ ++  ++AF TGEDL+    +R+F V   +VT + R   K M   L      
Sbjct: 681 MRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL------ 734

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     GL+                                  + +        + 
Sbjct: 735 --------AYGLS------------------------------AYGLSSQLKISTEDAKV 756

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               +  +   V +    L    EQ  ++G                             G
Sbjct: 757 QMDQYFSRFGGVRDY---LMAVVEQARKDGYTSTVL-----------------------G 790

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
           R     ++ ++            R            +Q  + DI+   M+   KA     
Sbjct: 791 RRRHLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIEVDKALKEHA 841

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
               ++L VHDE++ E    +      L    M S   +   +PL+      + +
Sbjct: 842 LKSRMLLQVHDELLFEVAAGEREQIEALVRDKMGSA--YPLDVPLEVSVGFGRSW 894


>gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
 gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56]
          Length = 869

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 101/658 (15%), Positives = 195/658 (29%), Gaps = 133/658 (20%)

Query: 30  VILFAFGFDDHPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
           ++  A   DD  V   D  +    + + LK+     D     +N   +   LK    + +
Sbjct: 328 LMGVALACDDS-VYYVDVENATDDVIKPLKDFFGRKDTEFYGYNIKRDSHALKNA-GIHV 385

Query: 89  PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                    +        +  + + +   L L S     GKE        +       + 
Sbjct: 386 NNIAL-DLALAEHLINGGAKISYQTLLADLGLVSSAGRYGKEWGQLSLPIQKSPPNPAQY 444

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALA 204
                       E          E+  +         E+    +  TI   G  +DV   
Sbjct: 445 FGEFVSHLPTIKETLLK------ELKSKNIEDIFFNMEMPLEKVLFTIERNGMPLDVEDL 498

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
             L +I+  E   L  ++ +L      + +  ++L   L+ + GL   D   +T   VL 
Sbjct: 499 QNLEKILSEELAILADDIYALAGSP-FNIKSPKQLAEVLYNKLGLTPVDKARSTKAEVLE 557

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCV 323
           +         ++   R    +     +  L + ++    R+  T   +G + TGR +   
Sbjct: 558 AMTGEHDVIEKILAFR-SVEKLLSTYVRALPKQVDPCTFRIHPTFNQMG-TVTGRLACQD 615

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLVVADLA 382
              QN+P  S                              +R       +    + AD +
Sbjct: 616 PNLQNIPIRSERGR-------------------------LLRKAFCDTHQNTYFLSADYS 650

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R LA ++ ++    AFE+ ED++  T ++ F+V   +VTK QR   K +       
Sbjct: 651 QIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQAKTVN------ 704

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G                              +     +       + 
Sbjct: 705 --------FGIIYG------------------------------QQAYGLSKILKISVSE 726

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +++  A+  ++  V+   NE      +                          NL +  
Sbjct: 727 AQKLIDAYFDRYPDVARFINETVSQACE--------------------------NLRVKT 760

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617
             GR          R   N T    +R  + G       +Q  + +++   M+       
Sbjct: 761 LLGR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLSDALE 810

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
             K    ++L +HDE++ E P+ ++     L   +M S       +PL       K +
Sbjct: 811 KRKLRSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAM--ILSVPLVVNILIGKNW 866


>gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73]
 gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104]
 gi|332204058|gb|EGJ18123.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47901]
          Length = 877

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYMQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58]
 gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58]
          Length = 878

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 89/661 (13%), Positives = 202/661 (30%), Gaps = 143/661 (21%)

Query: 32  LFAFGFDDHPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
             A   D + V   +       + ++L +     D++   +N   +   L+    + I  
Sbjct: 339 GIALS-DGNRVVYVELKQRPEELLEILCKFFSREDLSFYGYNIKRDLHALRNA-GIVIYN 396

Query: 91  HRWICTLVLARSNGLPS---------ALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
                  +        +         +      A +   +       L+      E +  
Sbjct: 397 VSC-DLALAEHLIHGGARTSFQSLLVSHGWAAVAARYVKEWGHHALPLVQLPENPEKYFG 455

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
                 P  +E+                +  +  +   + E  L ++  ++   G  +D 
Sbjct: 456 ELVALLPQIKESLLE-----------ELQKKQLTDVFFNLEMPLEHVLFSMERNGMPLDS 504

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
               +L   ++ +   L +E+ +L      + +  ++L   L+ + G+   D  ++T   
Sbjct: 505 KKLVSLEHSLEQDLAILTEEIYTLAG-EPFNIKSPKQLANILYNKLGITPLDKAKSTRAE 563

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWS 320
           VL + ++      ++   R    +     +  L   +     R+  T + +G + TGR +
Sbjct: 564 VLEALREEHKIIEKLLMFR-ALEKLLSTYVKALPRQVAPQTQRIHATFEQMG-TATGRLA 621

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV-IASEGKKLVVA 379
                 QN+P+ S                              +R    +  E    + A
Sbjct: 622 CRDPNLQNIPKRSSRGL-------------------------SLREAFLVPCETVSFLAA 656

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA ++ ++  L AF  GED++  T ++ F+V   QVTK QR   K      
Sbjct: 657 DYSQIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVTKQQRMYAKT----- 711

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G                              +     +      
Sbjct: 712 ---------VNFGIIYG------------------------------QQAYGLSKILKIP 732

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
            +  + + +A+ +++S V+     + +       + K      R  V   + +       
Sbjct: 733 LSEAQELIQAYFERYSGVARF---VEETIAAASHDLKVTTMLGRERVIDNWDEHPG---- 785

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +   SGR                                   +Q  + +++   M+  +K
Sbjct: 786 IRASSGR-----------------------------LAVNTRIQGSAAELIKCAMLEISK 816

Query: 620 A------GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
                     ++L +HDE++ E PD + +   +++   M +  +    +PL       K 
Sbjct: 817 EIQDRKLQSRMLLQIHDELIFEVPDGEMQEMCALVQEKMEAAMT--LTVPLVVNILIGKN 874

Query: 673 Y 673
           +
Sbjct: 875 W 875


>gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
 gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75]
 gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669]
          Length = 877

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDQ----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLSQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYLQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781]
 gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781]
          Length = 655

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 172/703 (24%), Positives = 277/703 (39%), Gaps = 85/703 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKEA 60
           LF+DFE  S  DLT+ G+ +Y +D     + F F        +LW+      +P+ +   
Sbjct: 6   LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMSTADLWEV--GQPVPKQIVGH 63

Query: 61  LENTDVTIVAHNSYFER----TVLKACFNL----DIPIHRWICTLVLARSNGLPSALKAV 112
           L       VAHN+ F+      VL+         +I I +  C+   AR NGLP +L   
Sbjct: 64  LN--GSPFVAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 121

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            EAL L  QK  EG + +             D    +H E +    +Y   D      ++
Sbjct: 122 CEALGLPVQKDTEGAKWMKEIAANP------DWTPADHPEHFARTYKYALIDTDAMVGVW 175

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           +   PL  + Q  + +D  IN RG   DV  A  +  +      +LD E+  LT G + +
Sbjct: 176 ENTVPLPPRMQAEFEMDMRINHRGIGTDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 235

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
              + K+K +     G  ++D    T +++ ++   L     Q+   R+ ASR+   K +
Sbjct: 236 VTEVAKIKEYA-ATLGEDMDDAGRETLKKI-AARDNLPDSLRQLIELRLDASRAP--KKS 291

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL----PRPSRSHEELDQIITHLPT 348
             +   +  GRL+    + GA      +      Q L    PRP +   + + I+     
Sbjct: 292 AAILRAHVGGRLQHHTIYHGALSGRSTARGAGGAQTLNTARPRPGKKTADCEAILDACLR 351

Query: 349 SITSD------PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
              +          L  ++D  R    A   G  LV ADL+GIEARV  W+A +  KL+A
Sbjct: 352 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPKLEA 411

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           FE G D Y       +++    VTKDQR +GK  +LALG+ GG  AF  MA+  G++L  
Sbjct: 412 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGGDGAFASMAANYGVHLPP 471

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                       +   WR         W
Sbjct: 472 EQVS---------------------------------------EIVYNWRAGRPAFERWW 492

Query: 522 NELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG----- 574
           +    +    ++    + ++   R +   +   KD   L + LPSGR++ Y +       
Sbjct: 493 SLCEYSVLMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEP 552

Query: 575 NNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                +    +      T   K+   N  Q ++RD+    +++  +   +IV  V+DE +
Sbjct: 553 GANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRVE-EIVHHVYDEAL 611

Query: 634 CET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            E   +        L   M    +W  GLPL AEG+   R+RK
Sbjct: 612 LEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654


>gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
 gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829]
          Length = 1030

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 94/610 (15%), Positives = 168/610 (27%), Gaps = 155/610 (25%)

Query: 87   DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            DI         + A      +                           +      L    
Sbjct: 549  DISTAALFDVGLAAYLLNSDAN----------------------DYSWQTLCSAYLPTFV 586

Query: 147  KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRG 196
             P+  +      EY        R ++  L  L             E  L  +   +   G
Sbjct: 587  YPDTTDDTDEPNEYALE-AIAVRALYPVLRELLHTDGSDDLFYELELPLIPVLLHMERNG 645

Query: 197  YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
               D  L    ++ +  E   +  EL  L      +     +L   LF   GL  + L +
Sbjct: 646  IYCDKHLLAEQSRALSHELNAMSLELRRL-AQQDFNIDSPMQLSHVLFDVWGLPTKGLKK 704

Query: 257  ------TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
                  +T  + L+S      +   + + R R  +     L+ LV  + SDGR+  T   
Sbjct: 705  TRRGYYSTNAQTLASLSMADERVQLILDYRERM-KIKNTYLDALVHDIRSDGRIHSTFNQ 763

Query: 311  LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              A+ TGR S      QN+P  S                          +   VR   + 
Sbjct: 764  TIAA-TGRLSSSDPNLQNIPTRS-------------------------SLGHRVRKAFVL 797

Query: 371  SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
                  +  D + IE R+LA ++ ++  + AF+TG D +  T AR F+V+P +VT   R+
Sbjct: 798  PRNHLFLACDYSQIELRLLAHLSQDEHLIHAFQTGADFHAATAARIFHVSPDEVTPALRS 857

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              K +                                             F     +   
Sbjct: 858  RAKAVN--------------------------------------------FGIVYGQQAF 873

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
              A          + +   + + +  V +  +E  Q   +                    
Sbjct: 874  GLATSLKISRKEAQEMIDRYFEAYPGVRKFLDESVQFARE-------------------- 913

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                  +  +    GR      + +             R            +Q  + DI+
Sbjct: 914  ------HSYVPTMYGRKRHIAQIDSRNF---QLRSFAERTAMNHP------MQGSAADII 958

Query: 611  AEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPL 663
               M+   K          ++L +HDE+  E    +     S++   M    +    +PL
Sbjct: 959  KLAMIEVEKQFAQLGLASKLILQIHDELDFEVVPEELERVSSVVKRAMEGVVT--LRVPL 1016

Query: 664  KAEGYESKRY 673
             AE   +  +
Sbjct: 1017 IAEISYADNW 1026


>gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda]
 gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda]
          Length = 889

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 104/674 (15%), Positives = 202/674 (29%), Gaps = 155/674 (22%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVH---------DPVMPQV---LKEALENTDVTIVAHNS 73
           E    I   F  D H +   D                P     + E L ++ +  + +N 
Sbjct: 339 EKNDYISITFSLDLHKLYFIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNL 398

Query: 74  YFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
                 L      +I         +++                L L+       K   + 
Sbjct: 399 KELLIFLLNFLRTEITSASCIDDIMLMHYILSAGKN------ELSLNEIIQTYNK---SY 449

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
             +   H+  + +N         LF               K L      +  + Y+ + I
Sbjct: 450 SEQYSEHKVCWLKN-TFDNLMSELFKN-------------KLLHCYYEIDLPICYILRNI 495

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
            + G  ++V L   L+  +  +   L+Q +  +      +    ++L   LF    L   
Sbjct: 496 ENNGIKINVPLLKDLSAQLKHKIDLLEQHIYQICGQ-EFNIASPKQLGEILFDVLKLPHA 554

Query: 253 D---LTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
                T++  T   VL +  +   +   +     + ++     ++TL   +N++     T
Sbjct: 555 KVSQKTKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRVHT 614

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                ++ T R S      QN+P  S    +                         VRS 
Sbjct: 615 TLLQTSTTTSRLSSHSPNLQNIPIRSEYGLK-------------------------VRSA 649

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            +A  G K++ AD + IE R+L++ A  +     F  GED++ +T A+ F +   QVT++
Sbjct: 650 FVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEE 709

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K +                    G++                             
Sbjct: 710 NRRKAKAINF--------------GIIYGIS----------------------------- 726

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                A +     T   +    + Q++  + +  +E  +   +                 
Sbjct: 727 -AFGLAKQLNISNTEAAQYINHYFQEYPAIRQYMHETKKFAVE----------------- 768

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                    +  +    GR      + ++     TT     R            +Q+ + 
Sbjct: 769 ---------HGYVKNMIGRRCYIPLINSSNL---TTRNFAQRAAINAP------IQSTAS 810

Query: 608 DILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKG 660
           DI    M+   K  Y       ++L VHDE+V E P+     A +++   M + P +   
Sbjct: 811 DIAKIAMIQYEKLIYSKYPAIKLLLQVHDELVFELPEELVDTACNLIKSTMENIPYF--S 868

Query: 661 LPLKAEGYESKRYR 674
            PLK E      + 
Sbjct: 869 FPLKVELKIGDNWG 882


>gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39]
 gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I
 gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6]
 gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39]
          Length = 877

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDQ----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597]
 gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597]
          Length = 877

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 98/667 (14%), Positives = 196/667 (29%), Gaps = 148/667 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFN 85
            ++ FA+   D   +L+      ++ + + +A        V     ++     VL     
Sbjct: 333 DLVGFAWSCGD---KLYATDKLELLQEPIFKAFLEKTPLRV-----YDFKKAKVLLHRLG 384

Query: 86  LDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
           +D+       + +             + + ++     L   +   GK +     + E   
Sbjct: 385 VDLQ-APAFDSRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFYGKGVKKALPEREKFL 443

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E   +  E    +  +   ++         EQ L ++   +   G  V 
Sbjct: 444 EHLARKLSVLVETEPVLLEKLSENGQLEL-LY-------DMEQPLAFVLAKMEIAGITVK 495

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    ++   KL QE+  L      +    ++L   LF + GL L     T+  
Sbjct: 496 KETLLEMQTENELVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-LTQ 612

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +   E  
Sbjct: 613 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWEDS 647

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433
            L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K
Sbjct: 648 VLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAK 707

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +                    G++    ++                             
Sbjct: 708 AVNF--------------GVVYGISDFGLSN----------------------------- 724

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                     +     + ++   +    +E+ +                           
Sbjct: 725 -NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD----------------------- 760

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 761 ---KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILKIA 808

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           M+   KA         ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 809 MIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQ--LSVPLIAD 866

Query: 667 GYESKRY 673
             E   +
Sbjct: 867 ENEGATW 873


>gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
 gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72]
          Length = 877

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae]
          Length = 907

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 91/657 (13%), Positives = 181/657 (27%), Gaps = 137/657 (20%)

Query: 39  DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CT 96
           D      D     P     L   L + D     H +      L         +      T
Sbjct: 363 DGNGGYIDTAMLTPDDDDALAAWLADPDNPKALHEAKLAMHDLA---GRGWTLGGITSDT 419

Query: 97  LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            + A           L  +        ++    +           +    D+        
Sbjct: 420 ALAAYLVRPGQRSFTLDDLSLRY---LRRELRAETPEQEQFSLLDNVDEVDKQAIQTLIL 476

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
                      +    ++      L   E  +  +   +   G   D+ L   L      
Sbjct: 477 RARAVVDLAAALDAELDLIDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQFGD 536

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN--KK 268
           +     +   ++    + +    ++L+  LF E G+     T+T   T    L S   K 
Sbjct: 537 QIRDAAEAAYAVIGKQI-NLSSPKQLQVVLFEELGMPKTKRTKTGYTTDADALQSLFCKT 595

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P    +  +R   +R  V  ++ L+ A+ +DGR+  T     A+ TGR S      QN
Sbjct: 596 EHPFLQHLLTHR-DVTRLKVT-VDGLLNAVAADGRIHTTFNQTIAT-TGRLSSTEPNLQN 652

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS---EGKK-LVVADLAGI 384
           +P  + +                            +R   +      G   L+ AD + I
Sbjct: 653 IPIRTNAGR-------------------------QIRDAFVVGSENNGYTELMTADYSQI 687

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  ++AF TGEDL+    +R+F +    +T + R   K M         
Sbjct: 688 EMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSY------- 740

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      GL+                                  A +        +
Sbjct: 741 -------GLAYGLS------------------------------AYGLATQLKISTEEAK 763

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
              + +  +   V +   ++ +   +                          +       
Sbjct: 764 LQMEQYFARFGGVRDYLMDVVEQARK--------------------------DGYTSTVL 797

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------ 618
           GR     ++ ++            R            +Q  + DI+   M+         
Sbjct: 798 GRRRYLPELDSSN---RQIREAAERAALNAP------IQGSAADIIKVAMIAVDKSLKQA 848

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
           K    ++L VHDE++ E    +      +    M S   +   +PL+      + + 
Sbjct: 849 KLASRMLLQVHDELLFEVAIGEREQIEAMVREQMGSA--YPLDVPLEVSVGFGRSWG 903


>gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585]
 gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585]
          Length = 877

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6]
 gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6]
          Length = 877

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 186/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+  +D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCEDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KSYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974]
 gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2]
          Length = 877

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIV 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN]
 gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923]
 gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I
 gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae]
 gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae]
 gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923]
          Length = 911

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 91/657 (13%), Positives = 181/657 (27%), Gaps = 137/657 (20%)

Query: 39  DHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CT 96
           D      D     P     L   L + D     H +      L         +      T
Sbjct: 367 DGNGGYIDTAMLTPDDDDALAAWLADPDNPKALHEAKLAMHDLA---GRGWTLGGITSDT 423

Query: 97  LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            + A           L  +        ++    +           +    D+        
Sbjct: 424 ALAAYLVRPGQRSFTLDDLSLRY---LRRELRAETPEQEQFSLLDNVDEVDKQAIQTLIL 480

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
                      +    ++      L   E  +  +   +   G   D+ L   L      
Sbjct: 481 RARAVVDLAAALDAELDLIDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQFGD 540

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN--KK 268
           +     +   ++    + +    ++L+  LF E G+     T+T   T    L S   K 
Sbjct: 541 QIRDAAEAAYAVIGKQI-NLSSPKQLQVVLFEELGMPKTKRTKTGYTTDADALQSLFCKT 599

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P    +  +R   +R  V  ++ L+ A+ +DGR+  T     A+ TGR S      QN
Sbjct: 600 EHPFLQHLLTHR-DVTRLKVT-VDGLLNAVAADGRIHTTFNQTIAT-TGRLSSTEPNLQN 656

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS---EGKK-LVVADLAGI 384
           +P  + +                            +R   +      G   L+ AD + I
Sbjct: 657 IPIRTNAGR-------------------------QIRDAFVVGSENNGYTELMTADYSQI 691

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ ++  ++AF TGEDL+    +R+F +    +T + R   K M         
Sbjct: 692 EMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSY------- 744

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      GL+                                  A +        +
Sbjct: 745 -------GLAYGLS------------------------------AYGLATQLKISTEEAK 767

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
              + +  +   V +   ++ +   +                          +       
Sbjct: 768 LQMEQYFARFGGVRDYLMDVVEQARK--------------------------DGYTSTVL 801

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------ 618
           GR     ++ ++            R            +Q  + DI+   M+         
Sbjct: 802 GRRRYLPELDSSN---RQIREAAERAALNAP------IQGSAADIIKVAMIAVDKSLKQA 852

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
           K    ++L VHDE++ E    +      +    M S   +   +PL+      + + 
Sbjct: 853 KLASRMLLQVHDELLFEVAIGEREQIEAMVREQMGSA--YPLDVPLEVSVGFGRSWG 907


>gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00]
 gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00]
 gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04]
 gi|332205064|gb|EGJ19127.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47368]
          Length = 877

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYLQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KSYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74]
 gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B]
 gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545]
          Length = 877

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYMQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KSYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612]
          Length = 421

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 83/510 (16%), Positives = 153/510 (30%), Gaps = 106/510 (20%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E  L  +   +   G  +D+     L++ +      ++ ++  L+     +    +
Sbjct: 2   YEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELSE-ENFNLSSPK 60

Query: 238 KLKTWLFLETGLHLED--LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +L   LF +  L  +    T+   +T   VL            +  +R   ++     ++
Sbjct: 61  QLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHR-TLTKLLSTYID 119

Query: 293 TLVEAMN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            L   +N   GR+        A+ TGR S      QN+P  +                  
Sbjct: 120 ALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIPVRTE----------------- 161

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                    S  +R   +  +  KL+ AD + IE R+LA +A E+  + AF   +D++  
Sbjct: 162 --------FSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDIHSL 213

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T    F      ++ D+R +GK +   + Y  G K     A +TG+++            
Sbjct: 214 TAKLIF--EKEVISSDERRVGKTINFGVIYGMGIKK---FARSTGVSIPE--AKEFLIKY 266

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E +     F    +             G   E                           
Sbjct: 267 KERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK---------------------- 304

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                            +     K+   + L S R                   Q  R  
Sbjct: 305 ---------------NGLGRLIGKDPYEIDLQSARR-------------AGMEAQSLRAA 336

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET-PDTDEFNA 644
                     +Q  S DI+   M+   K          ++L VHDE++ E  PD+ E   
Sbjct: 337 ANAP------IQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLFEVEPDSLEITT 390

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            ++   M         +PL  +      + 
Sbjct: 391 KLVKKTMEDCVK--LNVPLLVDIGIGDNWM 418


>gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
 gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516]
          Length = 875

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 86/660 (13%), Positives = 197/660 (29%), Gaps = 151/660 (22%)

Query: 35  FGFDDHPVEL------WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FN 85
           +  D+ PV             +  + +  KE  E+ DV        F+          + 
Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVDIVKSFKEEFESKDVNK----LSFDIKPCIYHLMRYG 383

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG-ETHECLYD 144
           +DI  + +   +++           ++               ++I    K  E       
Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSM----------ERSDPKVIGYDFKSLEDITGKGR 432

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQTINDR 195
             K       +    Y    +  T ++++++  +  ++           L  +   +   
Sbjct: 433 SKKTILESDEKEIDNYIVKYMMFTNKLYEKISEIEEEDMMHLYRDVEIPLIKVLCDMEFT 492

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G CV       + ++ + E   ++  +E L    + +    ++L   LF +  L +    
Sbjct: 493 GVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKKN 551

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T Q VL +          +   R   ++     ++ +V+ +  DG++  T Q   
Sbjct: 552 KTGPSTDQEVLEALSGRHEIIDYILRYR-TIAKLKTTYIDGMVDLIKEDGKIHTTFQQTI 610

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
           A +TGR S      QN+P  +                              +R   + S+
Sbjct: 611 A-QTGRISSTNPNLQNIPIRTEEGR-------------------------LIRKAFVPSQ 644

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  L+ AD + IE RVLA +A ++  + AF+ G D++  T +  F V   +VT  QR+  
Sbjct: 645 GSVLLDADYSQIELRVLADLANDEVMIDAFKNGADIHRKTASEVFKVDFDKVTSLQRSNA 704

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   +                G+   + +  +                          
Sbjct: 705 KAVNFGIV--------------YGIGDYSLSKDLHI------------------------ 726

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                      +   + +   +  + +   ++    ++                      
Sbjct: 727 ------TRKEAKEYIENYLDTYKEIKQYMEDIVAIGKE---------------------- 758

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                  +     R     ++ +             R            +Q  + DI+  
Sbjct: 759 ----KGYVETIMKRRRYIPELKSKN---YNVRSFGERVA------LNTPIQGSAADIIKV 805

Query: 613 GMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKA 665
            M+              ++L VHDE++ + P+ +      ++  +MT        + +  
Sbjct: 806 AMVKFYNRLNEENLKAKLILQVHDELIVDCPEDEREKVLEIMKDVMTHAVDLKVDMKIDV 865


>gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
 gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149]
          Length = 902

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 93/633 (14%), Positives = 175/633 (27%), Gaps = 131/633 (20%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVG 113
           L   L +     V H+S   R          +       T + A           L  + 
Sbjct: 380 LAAWLADPARPKVLHDSKHARLAFA-ARGWSLAGVA-RDTELAAYLARPDQRSYDLTDLA 437

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                   +++  +     F                 R    L       D  ++R+  +
Sbjct: 438 LRYLHRELRVDAPETGQLTFDGLGDDGEAEQNLMLQARATLDLA---DAIDAELSRDGEQ 494

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
               ++  E  L  +   +   G   D+     L      E     Q   +       + 
Sbjct: 495 SARLMAQVELPLSEVLAAMQRVGIAADLDYLQELEAHFAGEVKSAAQGAYAAVG-REFNL 553

Query: 234 RCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQA--IQVFNNRMRASRSAV 288
              ++L+  LF E GL      +T   T    L       P      +  +R   ++   
Sbjct: 554 GSPKQLQELLFGELGLPKTKKIKTGYTTDADALQWLYAQNPLPVLEHLLRHR-DVAKLKT 612

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             ++ L+++++ DGR+  T +   A+ TGR S      QN+P  +               
Sbjct: 613 T-VDGLLKSVSEDGRIHTTFKQTVAA-TGRLSSTDPNLQNIPIRTEEGRR---------- 660

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R   +  +G + L+ AD + IE R++A ++ +   ++AF +G D
Sbjct: 661 ---------------IRRAFVVGKGFECLLTADYSQIEMRIMAHLSSDDKLIEAFNSGHD 705

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            +  T +  F V  A+VT DQR   K M                    GL+    +    
Sbjct: 706 FHAATASSVFGVPVAEVTADQRRKIKAMNYG--------------LAYGLSAFGLSQQ-- 749

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                                 +   +      V +   E+   
Sbjct: 750 ----------------------------LGITAEEARGLMDNYFAGFGGVRDYLQEV--- 778

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +   +G                             GR     D+ ++           
Sbjct: 779 VARARHDGYTSTIL-----------------------GRRRYLPDLVSDN---RQRRDMA 812

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDE 641
            R            +Q  + DI+   M+              ++L VHDE+V E    + 
Sbjct: 813 ERMALNAP------IQGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPGER 866

Query: 642 FNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                L    M     +   +PL+    + + +
Sbjct: 867 DTLEALVRSQMGEA--YPLSVPLEVSVGQGRDW 897


>gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301]
          Length = 877

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYLQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KSYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195]
 gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570]
          Length = 877

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 185/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24]
 gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24]
          Length = 955

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 97/675 (14%), Positives = 177/675 (26%), Gaps = 147/675 (21%)

Query: 21  ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTV 79
             +  ED   +       D      D        +  L   L + +   V H        
Sbjct: 401 PGRIGEDAAALAI---VRDGAAVYIDLSGQDAEAENVLAAWLRDPEAPKVMHGFKAALKA 457

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
           L     L++       T +             + E  +                      
Sbjct: 458 LS-ARGLELE-GVVDDTSISGYLIQPDRRTYELAELAQHHLN-----------IEISTAV 504

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTV-------TREIFKRLEPLS--SKEQELWYLDQ 190
                       +     GE       V         E+ +R       + E  +  +  
Sbjct: 505 AKAGQLELSFDGDDSAAAGELVHAAAVVHALSRYFEAELKERKAEELLSTLELPVSQVLA 564

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  +D+         +        +   +     V +    ++L+T LF E  L 
Sbjct: 565 DMELAGIAIDMQRMDEQLADLAKVIDNAQELAFAAIGHEV-NLGSPKQLQTVLFDELQLP 623

Query: 251 LEDLTET---TCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                ++   T    L +  +K   + +        +S+     L +L +++  DGR+  
Sbjct: 624 KTKKIKSGYTTDAASLKNLLEKTGHEFLVQLMAHRESSKLR-QMLESLKKSVAEDGRIHT 682

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T     A+ TGR S      QN+P  S                              VR 
Sbjct: 683 TYAQNVAA-TGRISSNNPNLQNIPIRSEEGRR-------------------------VRG 716

Query: 367 CVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             + SEG + L+ AD + IE R++A ++G+   ++A+  GEDL+    +  F+V   QVT
Sbjct: 717 IFVVSEGYECLLSADYSQIEMRIMAHLSGDAGLIQAYRDGEDLHRFVGSNIFHVPTDQVT 776

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R+  K M   L Y            +  L ++                         
Sbjct: 777 SAMRSKVKAMSYGLAYG-----LTSFGLSKQLEIS------------------------- 806

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                               + K +  +   V +    +                     
Sbjct: 807 --------------VDEARTLMKEYFDRFGAVRDYLRGVVDQAR---------------- 836

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                      +       GR     D+ +             R          + +Q  
Sbjct: 837 ----------IDGFTATIEGRRRYLPDLTSTD---RQLRENAERIA------LNSPIQGS 877

Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+   M+              ++L VHDE+V E    +      L    M S     
Sbjct: 878 AADIIKRAMLGVHAELKAQGLKSRMLLQVHDELVLEVAAGEREAVEKLVTEQMGSAAD-- 935

Query: 659 KGLPLKAEGYESKRY 673
             +PL  +      +
Sbjct: 936 LSVPLDVQIGVGPSW 950


>gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 888

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 100/622 (16%), Positives = 177/622 (28%), Gaps = 133/622 (21%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKM 123
             + HN+     V        +       T + A           L A+           
Sbjct: 380 PKILHNAKGAMRVFAEH-GWSVEGVTM-DTALAAYLVKPGRRSFDLDALSLEYLHRELAP 437

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
               +    F + E  E      +           E    +V     +          E 
Sbjct: 438 AAEADGQLAFGEDEGAEAEALMIQARAVLDLGEAFESRLEEVGAADLLR-------DMEL 490

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
               L   +   G   D A    + Q+      +  +E  +       +    ++L+  L
Sbjct: 491 PTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGH-EFNLGSPKQLQEVL 549

Query: 244 FLETGLHLEDLTET---TCQRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           F E  L     T+T   T    L+     T  +   +       ++  V  +  L++ + 
Sbjct: 550 FGELALPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVT-VEGLIKTIA 608

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +DGR+  T     A+ TGR S      QN+P  +                          
Sbjct: 609 ADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGRA--------------------- 646

Query: 360 ISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T  ++ F 
Sbjct: 647 ----IRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAASQVFA 702

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V P  V  + R   K M   L                GL+    +  +   +A       
Sbjct: 703 VEPTAVDAEMRRKIKAMSYGL--------------AYGLSAFGLSQQLNIEAA------- 741

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                                      +  A+ ++   V +    L +A ++    G   
Sbjct: 742 -----------------------EARALMDAYFERFGGVRDY---LRRAVDEARATGYTA 775

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                     GR     D+ ++            R         
Sbjct: 776 TL-----------------------FGRRRYLPDLNSDN---RQRREAAERMALNAP--- 806

Query: 599 ENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651
              +Q  + DI+   M+N   A         ++L VHDEIV E    +   A  L    M
Sbjct: 807 ---IQGTAADIVKIAMLNVDSALKDAGLTSRMLLQVHDEIVLEVAPGERATAEELVRREM 863

Query: 652 TSNPSWAKGLPLKAEGYESKRY 673
            +       +PL         +
Sbjct: 864 ANAVQ--LRVPLGVSVGSGPDW 883


>gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833]
 gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833]
          Length = 893

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 102/671 (15%), Positives = 189/671 (28%), Gaps = 131/671 (19%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75
           L   G    +    +   A         L            L   L +      AH+   
Sbjct: 336 LAFLGTYG-SGTGRLDGIAIATSAGAAYLDPARLTQEDEAALAAWLADETKPKAAHDVKG 394

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
               L     LD+       T + A              +  +    +      +     
Sbjct: 395 PLLALWEH-GLDLRGLTC-DTAIAAYLAMPGQ------RSFPIEELVLRYLNRELRYETP 446

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTV-TREIFKR--LEPLSSKEQELWYLDQTI 192
            +    L+D  +        L  +  +       R +  R     ++  E  L  +   +
Sbjct: 447 ADGQASLFDDVEAGMARDLALKAQAVRELADALERHLAARGGTRLMTEVELPLTRVLAEM 506

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G   D     TL         +  +   +L      +    ++L+  LF++ GL   
Sbjct: 507 EHTGIAADRQYFATLEAEFSAAAKQAVEAAHALVG-EQFNLGSPKQLQEILFVKLGLPKT 565

Query: 253 DLTET---TCQRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              +T   T    L+     T  +   +       ++     +  L++ +  DGR+  T 
Sbjct: 566 KKIKTGYTTDADALAWLATQTDNELPAILLRHRDQTKLRAT-VEGLIKEIADDGRIHTTF 624

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
             + A+ TGR S      QN+P  +                              +R   
Sbjct: 625 NQIVAA-TGRLSSEKPNLQNIPIRTAEGRR-------------------------IRKGF 658

Query: 369 IASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           I  +G   L+ AD + IE R++A ++G++  + AF +G D +  T AR F + P QVT +
Sbjct: 659 IVGKGYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQATAARVFGLPPDQVTPE 718

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            RA  K M   L Y               LN+                            
Sbjct: 719 LRARIKAMNYGLAYG-----LSDFGLAGQLNIPVA------------------------- 748

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                             +K+ + ++ + V E  N +     +                 
Sbjct: 749 --------------EARALKEEYFEEFAGVREYLNRVVDQARK----------------- 777

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                    +       GR     D+ ++            R            +Q  + 
Sbjct: 778 ---------DGYTETILGRRRYLPDLTSDN---RQRREMAERMALNAP------IQGSAA 819

Query: 608 DILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLP 662
           DI+   M+   KA       ++L VHDE+V E    +  +  +++   M     +   +P
Sbjct: 820 DIIKVAMLKVRKAMEGMRSRMLLQVHDELVFEVAPGELDDLIALVREHMGGA--YPLRVP 877

Query: 663 LKAEGYESKRY 673
           L         +
Sbjct: 878 LDVSIGTGPTW 888


>gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
 gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101]
          Length = 1045

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/746 (11%), Positives = 212/746 (28%), Gaps = 167/746 (22%)

Query: 7    DFETRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHDPV-------MPQVL 57
            D ET S              D  ++     +      V      H          + + L
Sbjct: 386  DTETTSLEP----------RDAELVGIGCCWGKNMEDVAYIPTGHKTDKNLDKVTVLESL 435

Query: 58   KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
            K  LE+++   V  NS F+R V   C  + +    +  T++ +         +L+ +   
Sbjct: 436  KPVLESSEYPKVFQNSKFDRLVF-RCQGIKL-TGVFFDTMLASYVLNPEAKHSLEEIYIR 493

Query: 116  LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                         L       ++++ +  +N+           +YC   V VT ++ ++L
Sbjct: 494  Y------------LRNVGINLQSYQDVVSKNQTIADLDILKVADYCGTQVWVTFQLVEKL 541

Query: 176  EPLSSK------------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
                 K                  EQ L  +   +  +G  +D+      +  +  +  +
Sbjct: 542  RTELEKADKNKSTEKSLYRLLVDVEQPLEPVLAEMEFQGIRIDIEYLKKFSVQLKEDLEE 601

Query: 218  LDQELESLTYGLVSSSRCLEKLKTWLFLET-GLHLEDLTETT------CQRVLSSNKKLT 270
            +++         V       ++    F             ++        ++L  +++  
Sbjct: 602  IEKRAFKTVDSQVLQKYLQTEIHEIDFNSFSNQQELKKAISSPILKAYITKLLKEHRQNL 661

Query: 271  PQAIQVFNN---RMRASRSA----VLKLNTLVEAMNSDGRL------------------- 304
                   N    R   + ++       L  ++   +   R                    
Sbjct: 662  ENIESQINQVETRDLLNLNSPSQLSELLFRILNQNHKKSRRIKTGYSTDVVALEKLQTEP 721

Query: 305  -RGTLQFLGASRTGRWSGCVFPPQNLPR----------PSRSHEELDQIITHLPTSITSD 353
                +     +    +       + +PR           + +  + D            +
Sbjct: 722  EHHPIIDEILNHRTLYKLFSTYVEAIPRLVRSDTQRVHTNFNQTQTDTGRLSSSEPNLQN 781

Query: 354  PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                   S  +R   +  +   LV AD + IE R+LA ++ E   ++A++  +D++  T 
Sbjct: 782  IPIGTKFSRQIRQAFLPKKDWLLVAADYSQIELRILAHLSQEPVLIEAYKNNQDVHTVTA 841

Query: 414  ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
               F     +++ ++R +GK +   + Y  GA+          + +             +
Sbjct: 842  KLLF--EKEEISSEERRVGKTINFGVIYGMGAQKL-----ARSVKITVKESKQFLEKYKQ 894

Query: 474  EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            ++     +   +++        +  +G       + + +  S+      +          
Sbjct: 895  QYSLVFAYLEKLKKQAIAKGYVETILGR------RRYFELESKTIRDLKDKEPE------ 942

Query: 534  NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                                                  ++       +    Q+ R    
Sbjct: 943  --------------------------------------EINLQELKFSQNDAQILRSAAN 964

Query: 594  GGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASM-LY 648
                    +Q  S DI+   M+   K        ++L VHDE+V E P ++       + 
Sbjct: 965  SP------IQGSSADIIKIAMIRLNKILTNYQTKLLLQVHDELVFEVPPSELEKMQQLIK 1018

Query: 649  HLMTSNPSWAKGLPLKAEGYESKRYR 674
              M +  +    +PL  + +  K + 
Sbjct: 1019 STMENAVT--LKVPLIVDIHGGKNWM 1042


>gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
 gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1]
          Length = 645

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/717 (14%), Positives = 190/717 (26%), Gaps = 154/717 (21%)

Query: 4   LFIDFETRS-PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMP 54
           +  DFET               A    +   +F   +         H           + 
Sbjct: 22  IAFDFETAPREKYRRDEKAALDAHKADIAGVSFSVSEGTAVYVPLKHKTGKNAGSPDKIM 81

Query: 55  QVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
           Q L E    N  V  +AHN  FE   L     + +       T + A        LK+  
Sbjct: 82  QWLSENVFANRKVVKIAHNLSFEAMFL-YALGVVLQP-PCYDT-IAAALM----TLKSNT 134

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               L+   ++   + +              R              Y   D   T  ++ 
Sbjct: 135 AFRTLADSGLKTLTQELFGVDLPSFETVTAGRYFDELDPQDEETVRYACADSDYTLRLYH 194

Query: 174 RLEPLSSKEQELWYLDQT------------INDRGYCVDVALAHTLNQIVDVERTKLDQE 221
                 ++                      +   G   D  L        + +  +L   
Sbjct: 195 LFNNWFNRYLPKHRFIVEKLESPAAVYCGLMKYNGLLADEELMLKKQAEAEGKLAELRGN 254

Query: 222 LESLTYGLVSSSR-CLEKLKTWLFLETGLHLEDLTET-----------TCQRVLSSNKKL 269
           +  L   +   +       K +L+ +  L +   T                     N+  
Sbjct: 255 IAFLIGDVNIGANASTSAFKKYLYDDLKLPVFKTTAKYQEAMDDEAMILLSEWCRENRPE 314

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
             +  ++     R  +     ++  +E +NS         F   + TGR++      QN 
Sbjct: 315 LAELFELVQEYRRWGKIKSTYIDGYLEYINSVTGRIHPDMFPLGTETGRFAARNPNLQNC 374

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           PR                                VR+  IA +GK L+  D + IE RV 
Sbjct: 375 PRKDND-------------------------PVGVRNFFIAPKGKALLSLDFSQIELRVG 409

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-------VTKDQRAIGKVMELALGYQ 442
           A+   ++  L+ + TG D++  T +  + +   +         K++RAI K     + Y 
Sbjct: 410 AFYCRDERMLETYRTGGDIHAQTTSVIYRIPFEEAADKSAQHYKERRAIAKNCNFGVFYG 469

Query: 443 GGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              K   +      GL+                                          +
Sbjct: 470 LFPKGLHRNLKFKAGLDTP---------------------------------------LS 490

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            CER+    +  + R+ +      +  ++                               
Sbjct: 491 ECERIIANLKAGYPRLVQWQ---EKTKKRAASRRYTETWL-------------------- 527

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---- 617
              GR     D+ ++     +   +               +Q  + DIL   +       
Sbjct: 528 ---GRRRYLPDIASSDWGKKSFAER---------CALNTPIQGTAADILKLALGRIIEGL 575

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKR 672
             +     VL +HDE+V E P+     A++ +   M   P     +P+ AE     R
Sbjct: 576 PQRMRLRPVLQIHDELVFEVPEDKVHEAAVFIKSCMEERPFEEFDVPIVAEAAFGVR 632


>gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
 gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ]
          Length = 874

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 107/601 (17%), Positives = 182/601 (30%), Gaps = 145/601 (24%)

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +P+  W    + A                     +     +                   
Sbjct: 402 LPLSLWFDLGLAAYLLDPEQ------RNYGFPRLRDSLFADP----------------TV 439

Query: 148 PNHREAWRLFGEYCKGDVTV-TREI--FKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                +             V T  +      + +   E  L  +   +   G  VD+   
Sbjct: 440 DASAVSPDDTARAAALLAEVYTARLDTAGLTDLVERLELPLIPVLLDMERAGIGVDLRSL 499

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQ 260
                 V  + T+L++EL +L      + R  ++L   LF E GL  +  T     +T Q
Sbjct: 500 AAFGAEVATDLTRLEKELHTLAGHP-FNPRSSQQLGEILFTEMGLTPKGKTPGGAASTSQ 558

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
             L       P   ++   R +  +     L+ L +  ++DGR+  TL    A+ TGR S
Sbjct: 559 DALERLAGSNPLVDRILEFR-KLEKLRSTYLDPLPKLADADGRIHTTLN-NMATATGRLS 616

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QN+P                                 +R C +A  GK LV AD
Sbjct: 617 SSNPNLQNIPIRGPLGRR-------------------------MRECFVAGPGKTLVAAD 651

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA ++GE   L AF  G D++  T +  F+   A++  D+R   K +     
Sbjct: 652 YSQIELRVLAHLSGEPALLSAFAAGADIHARTASLLFDKPEAEIGPDERRQAKTIN---- 707

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G+     +                               +     
Sbjct: 708 ----------FGLLYGMGPQKLS------------------------------RDLGIKL 727

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
            A +     + ++ S +S  ++ + ++ +     G                         
Sbjct: 728 DAAKAFIAKYFERLSGLSAFYDNIVESAKT---QGYVTTLA------------------- 765

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK- 619
               GR  +  D+ +  S       Q  R+          +VQ  + DI+   M+ A K 
Sbjct: 766 ----GRRRLLPDIESKNS---QLASQARRQAI------NTVVQGGAADIIKMAMLAAHKD 812

Query: 620 -----AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                AG  +VL +HDE++ ETP      A   L  LM      A  +PL  +      +
Sbjct: 813 ADLKRAGAVMVLQIHDELLLETPMDTADAAGKRLSDLMCGVIKLA--VPLVVDWGTGHTW 870

Query: 674 R 674
            
Sbjct: 871 G 871


>gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424]
 gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424]
          Length = 873

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/674 (12%), Positives = 191/674 (28%), Gaps = 157/674 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT-VL-- 80
            +  V+  A  + D  V ++    +    +   ++  LE+    +V     ++   +L  
Sbjct: 327 HNSDVVNIAV-YKDENVYIF---SEDNFFENKFVRNYLESDAEKVV-----YDYKKILYI 377

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                +           + +    +    +       L          +I    + E + 
Sbjct: 378 AKRNGISDIAGNVFDVKIASYLLDVTVKTE-------LDKIVFNTLGNIIK--SEEEIYG 428

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQ 190
               R  P +         Y    V    ++ +       +E           ++  +  
Sbjct: 429 KGVKRTLPTNEI----LYPYLAQVVKSIFDLKEIQSARLKEENMDSLYKNIEVKVARVLA 484

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  V       ++  +D     L+  + +L      +    ++L   LF + GL 
Sbjct: 485 NMEYEGIHVSKKALEDMSDELDERIKILEASIHTLAGS-EFNIASPKQLGIVLFEDLGLP 543

Query: 251 LEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
               T+   +T   VL   +        +   R+  ++        LV+ +   G++   
Sbjct: 544 PVKKTKTGYSTSVEVLEQLQHSHEIIPLIMEYRV-LTKLNSTYAKGLVKDITRKGKIHTR 602

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
            +    ++TGR S      QN+P      ++                         +R  
Sbjct: 603 YEQ-TLTQTGRLSSVNPNLQNIPTRIEEGKK-------------------------IRKA 636

Query: 368 VIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            I  S+ + ++  D + IE RVLA MA ++  + AF    D++  T +    V+  +VT 
Sbjct: 637 FIPASDDRVILSIDYSQIELRVLAHMAQDKGMIDAFTHDLDIHTKTASEVNGVSLDEVTP 696

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             R   K +   +                G++    ++                      
Sbjct: 697 TMRREAKAVNFGIV--------------YGISDFGLSN---------------------- 720

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                            +     + +  S V++   ++ +  ++                
Sbjct: 721 --------NLGITRKRAKEFIDKYLETFSGVNKYMTDIVEFAKE---------------- 756

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                     +  +     R     ++      +                     +Q  +
Sbjct: 757 ----------HGYVETLYNRRRALPEINAKNKIV---------ASLNARLAMNTPIQGTA 797

Query: 607 RDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659
            DI+   M+NA      TK    ++L VHDE++ +         +  +  +M        
Sbjct: 798 ADIIKLAMINAFDYIEKTKVDAKLLLQVHDELIFDVNKDVVDEFTIEMVKIMEEAVE--L 855

Query: 660 GLPLKAEGYESKRY 673
            + LKAE      +
Sbjct: 856 DVKLKAEASSGSSW 869


>gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a]
          Length = 829

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/631 (14%), Positives = 177/631 (28%), Gaps = 154/631 (24%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAV 112
            LK    ++D T       F+         L+   +    T + A          +L  +
Sbjct: 336 ELKAY-ADSDSTKYT----FDIKDTLTVSGLEKLNNNKFDTTLAAYLVDPDSNDYSLSRL 390

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                +      + K  I      +   C                      D+ +     
Sbjct: 391 CAQYGVPEGNSIQEKS-ITVAALNDILNCKISETGSAAVLT----------DIEIPLA-- 437

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                          +   +   G  +D        + V  +  K+ +E+         +
Sbjct: 438 --------------TVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGY-EFN 482

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L + LF +  L     T+   +T   VL S     P    +   R   ++    
Sbjct: 483 IGSPKQLGSVLFEKLALPSAKKTKTGYSTNADVLESLMDKHPIVPLITEYR-ALTKLQNT 541

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            +  L++ +  DGR+  T +    +RTGR S      QN+P  +    E           
Sbjct: 542 YVTGLLKVVGEDGRIHSTFKQ-TETRTGRISSAEPNIQNIPVRTPLGRE----------- 589

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R    A +G  LV AD + IE RVLA ++G++   KAF  G D++
Sbjct: 590 --------------MRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIH 635

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T ++ FN     VT D R+  K +                    G+   + +  +   
Sbjct: 636 TVTASQVFNQPIEWVTPDLRSKAKAVNF--------------GIVYGIGAFSLSKDI--- 678

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                 +++  K+S +++         +
Sbjct: 679 ---------------------------GVSVPKASEYIRSYLSKYSGIAQYMELTVAKAK 711

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +                          +  +    GR    +++               R
Sbjct: 712 R--------------------------DGYVETMFGRRRYIKELAAKN---KNLQAFGER 742

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+              ++L VHDE++ E  +     
Sbjct: 743 VA------KNTPIQGTAADIIKIAMIKVYNRLKDSGLDARLILQVHDELIVEAKEDCAEK 796

Query: 644 AS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            + +L   M +       +P+  +    K +
Sbjct: 797 VALLLKEEMENAVK--LTVPMTVDVNIGKTW 825


>gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455]
 gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455]
          Length = 870

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 327 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 376

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 377 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 426

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 427 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 486

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 487 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 545

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 546 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 603

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 604 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 638

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 639 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 698

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   +                G++    ++                           
Sbjct: 699 AKAVNFGVV--------------YGISDFGLSN--------------------------- 717

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 718 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 753

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 754 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 799

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 800 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 857

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 858 ADENEGATW 866


>gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 922

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/614 (16%), Positives = 183/614 (29%), Gaps = 139/614 (22%)

Query: 86  LDIPIHRWICTLVLARSNGLPSA---LKAVGE--ALKLSSQKMEEG-KELIARFCKGETH 139
           +D      I   +LA + G       L  + E   L         G KEL    C   + 
Sbjct: 417 VDYTTGTIIDLSILAYACGDAQKVAYLSDLAELYRLNYPISSENTGMKELPENNCSISSA 476

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLD 189
           E           +  +    Y          ++  ++     +            L  + 
Sbjct: 477 EAEAQAQAVAVADLNKELISY----FNTIIAVYSLVKSKIESQGLNYLVSQVDLPLVEVL 532

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  VD A+     +    E   +  E+  L      +     +L   LF E GL
Sbjct: 533 TQMERDGVAVDEAVLQRQTEAFSSEIADIADEIYKLAGH-EFNLNSPRQLAEVLFNELGL 591

Query: 250 HLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                 ++   T    L   + L P    +   R   S+     +  L + + +D R+  
Sbjct: 592 PGGKKLKSGYSTSAEDLMHLQDLHPIVDLILRYR-MLSKLLSTFIVGLHKYIAADHRIHT 650

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T      ++TGR S      QN+P  +                              +R+
Sbjct: 651 TFHQ-TLTQTGRLSSSDPNLQNIPARTEEGRR-------------------------IRA 684

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
             IA+ G  L+ AD + IE R+LA ++G+   LKAF   ED++  T AR F++ P  VT 
Sbjct: 685 AFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKEDIHALTAARVFHMDPVDVTS 744

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R +GK +  ++ Y   A +  +      L+++              +   + +   + 
Sbjct: 745 EHRRVGKTINFSIVYGISAFSLAQ-----DLHISVAEAKNYIAEYYATYPQIKAYLNDLV 799

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           E        +                                             +RR +
Sbjct: 800 ERAKIDGYVETMFK-----------------------------------------RRRYI 818

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
           P +  K     L                              R            +Q  +
Sbjct: 819 PELKSKNYNRRLF---------------------------GERVAMNTP------IQGTA 845

Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAK 659
            DI+   M+N  +          ++L +HDE+V E P+ +    A +L + M        
Sbjct: 846 ADIMRLAMVNLARKLREKKLKSHMILQIHDELVLEVPEPEFAEVAELLRNEMERVIDLKV 905

Query: 660 GLPLKAEGYESKRY 673
            LP   E    K +
Sbjct: 906 SLP--VELEYGKNW 917


>gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
 gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Streptococcus pneumoniae AP200]
          Length = 889

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 346 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 395

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 396 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 445

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 446 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 505

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 506 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 564

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 565 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 622

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 623 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 657

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 658 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 717

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   +                G++    ++                           
Sbjct: 718 AKAVNFGVV--------------YGISDFGLSN--------------------------- 736

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 737 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 772

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 773 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 818

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 819 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 876

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 877 ADENEGATW 885


>gi|303232660|ref|ZP_07319345.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4]
 gi|302481146|gb|EFL44221.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4]
          Length = 1126

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/601 (14%), Positives = 161/601 (26%), Gaps = 127/601 (21%)

Query: 88   IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
            + I     T + A      +A   V E L   +      ++ I              +  
Sbjct: 634  VAIDAVFDTQLAAYLLNSDAASYDVDELLMQYAGVASYPQQPIGSAAAHGFATDDDQKAL 693

Query: 148  PNHREAWRLFGEYCKGDVTVTREIF--KRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
                E              +   +   +  +     E  L  +   +   G  VD  + H
Sbjct: 694  S---EMLACAKAQRVLQAPLMYALMLDESYDVYCGIELPLICVLLDMERTGLHVDTDILH 750

Query: 206  TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE----TTC 259
              +  ++ E   +   L +       +     +L   LF    L  +    T+    +T 
Sbjct: 751  EQSMAINREINHMLATLHTDIG-ETINIDSPMQLSHVLFDVWQLPTKGLKKTKRGYFSTN 809

Query: 260  QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             + L +  K   +   + + R   ++     L+ L   +  DGR+  T     A+ TGR 
Sbjct: 810  AKTLETLSKQDDRVQLILDYR-ERAKLKSTYLDALPAQIKPDGRIHTTFNQTVAA-TGRL 867

Query: 320  SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
            S      QN+P  S                          +   VR     ++    +  
Sbjct: 868  SSSDPNLQNIPTRS-------------------------QLGHRVRKAFTVADDSVFLTC 902

Query: 380  DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
            D + IE R+LA ++ +   + AF +G D +  T +R F +    VT   R+  K +   +
Sbjct: 903  DYSQIELRLLAHLSQDPHLIAAFNSGADFHAATASRIFGIEQDAVTPQLRSRAKAVNFGI 962

Query: 440  GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                                                           +     A      
Sbjct: 963  V--------------------------------------------YGQQAFGLASSLKIS 978

Query: 500  GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                + +   + + +  V E  +E                                 +  
Sbjct: 979  RATAKEMIDKYFEVYPCVREFLDESVAFAR--------------------------AHGY 1012

Query: 560  LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            +    GR      +  +            R            +Q  + DI+   M+   K
Sbjct: 1013 VPTMYGRKRHIEHINASNF---QLRSFAERTAMNHP------MQGSAADIIKLAMIEVEK 1063

Query: 620  A------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672
                      +VL +HDE+  E    D    S L    M    S    +PL A+   +  
Sbjct: 1064 RLRASSLRAHLVLQIHDELDFEVATADCDALSELVKDAMEHVVS--LRVPLIADISYASN 1121

Query: 673  Y 673
            +
Sbjct: 1122 W 1122


>gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4]
          Length = 877

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/597 (13%), Positives = 170/597 (28%), Gaps = 131/597 (21%)

Query: 93  WICTLVLARSNGL---PSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                V A              +    L ++        +LI +    +        N  
Sbjct: 392 VYDAGVAAYLLNPLKDTYGYDDIARDVLGMTVPSKT---DLIKKMS-YKDACAKEQDNFT 447

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDVALAHT 206
                   +  +  G       +         +  EL  +     + D G  V       
Sbjct: 448 -RMAGLMAYTAFAAGKPLSE-RLAAEGMEDLYRNIELPLIYTLFHMEDEGIAVRREELTA 505

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
               +  +   L++E+  +T     +    ++L   LF +  +     T+   +T   VL
Sbjct: 506 YGGKLKKQIAVLEKEIWEMTGQ-EFNINSPKQLGEILFEKMQIKGGKKTKTGYSTAADVL 564

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P   ++ + R   ++      + L   +  DGR+         + TGR S   
Sbjct: 565 EKLAPDYPVIQKILDYRQY-TKLNSTYADGLGTYIKEDGRIHSRFNQ-TITATGRISSTE 622

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P       E                         +R   +   G   + AD + 
Sbjct: 623 PNLQNIPIRMELGRE-------------------------IRKVFVPRNGFLFLDADYSQ 657

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA M+G++  ++A++T +D++  T ++ F++   +VT  QR   K +        
Sbjct: 658 IELRVLAHMSGDERLIEAYKTAQDIHAITASQVFHIPLNEVTPLQRRNAKAVNF------ 711

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++                                  + +        
Sbjct: 712 --------GIVYGIS------------------------------AFGLSEDLSISRKEA 733

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
               + + + + +V    + L    ++                             +   
Sbjct: 734 MEYIERYFETYPQVKSFLDSLVAHAKE--------------------------QGYVTTM 767

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
            GR     ++ ++     +      R            +Q  + DI+   M+   +    
Sbjct: 768 FGRRRPVPELKSSNFMQRSF---GERVAMNSP------IQGTAADIIKIAMIRVDERLRR 818

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ ET + ++     +    M    S    + L+ + +  K +
Sbjct: 819 ENLRSRLILQVHDELLIETAEDEKETVMKILSEEMHHAAS--LKVELEIDMHGGKNW 873


>gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564]
 gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564]
          Length = 877

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 96/666 (14%), Positives = 193/666 (28%), Gaps = 146/666 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFN 85
            ++ FA+   +   +L+      ++ + + +A        V     ++     VL   F 
Sbjct: 333 DLVGFAWSCGE---KLYATDKLELLQEPIFKAFLEKTPLRV-----YDFKKAKVLLHRFG 384

Query: 86  LDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
           +D+       + +             + + ++     L   +   GK +     + E   
Sbjct: 385 VDLQ-APAFDSRLAKYLLSTVEDNEIATIASLYGQTYLIDDETFYGKGVKKALPEREKFL 443

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E   +  E    +  +   ++         EQ L ++   +   G  V 
Sbjct: 444 EHLARKLAILVETEPVLLEKLSENGQLEL-LY-------DMEQPLAFVLAKMEIAGITVK 495

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    D+   KL QE+  L      +    ++L   LF + GL L     T+  
Sbjct: 496 KETLLEMQAENDLVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYTKKTKTG 554

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-LTQ 612

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +   E  
Sbjct: 613 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWEDS 647

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  ++           
Sbjct: 648 VLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERSE----------- 696

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
                                              +       A NF      +    + 
Sbjct: 697 --------------------------------DVTANDRRNAKAVNFGVVYGISDFGLSN 724

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                    +     + ++   +    +E+ +                            
Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD------------------------ 760

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                +     R     D+ +             R            +Q  + DIL   M
Sbjct: 761 --KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILKIAM 809

Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEG 667
           +   KA         ++L VHDEIV E P ++      L    M         +PL A+ 
Sbjct: 810 IQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQ--LSVPLIADE 867

Query: 668 YESKRY 673
            E   +
Sbjct: 868 NEGATW 873


>gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397]
 gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293]
 gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458]
 gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397]
          Length = 877

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   +                G++    ++                           
Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 725 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 885

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/633 (12%), Positives = 180/633 (28%), Gaps = 127/633 (20%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
             ++      LK   E+  +  + ++   +  VL     +D+  +    +++        
Sbjct: 354 IDYNKDNLSNLKALWEDDSIEKLGYDLKEDIIVL-QYNKIDLK-NYCHDSMIAEYLLNST 411

Query: 107 SAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            +      +  +    + K EE         K        D N         ++      
Sbjct: 412 ESNYEIDHLASSYFNKAYKSEEELLGKGVKKKKFQEIDEGDLNSYFSYILNMVYKISPLQ 471

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              +  E     +   + E  L  +   +   G   DV + + +++ +      L+  + 
Sbjct: 472 MQKIEAE--GMKDLYINVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIY 529

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
                   +    ++L   LF +  L +   T+   +T   VL   +  +     +   R
Sbjct: 530 KD-ADEQFNINSPKQLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYR 588

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            + S+     ++ L + +N       +      + TGR S      QN+P  +       
Sbjct: 589 -KISKIKNTYIDGLRDVINKKTGRIHSRFNQTVTSTGRISSTEPNLQNIPIKTHEGR--- 644

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R  +++SEG  LV +D + IE RVLA ++ + + + 
Sbjct: 645 ----------------------LIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMIN 682

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T +  F+    +V+ + R++ K +   + Y              GL+  
Sbjct: 683 AFADGLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYGIS---------DYGLS-- 731

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                      +     +      + + 
Sbjct: 732 ---------------------------------QNLNIPRKEAKTYIDNYLGHFQGIKKY 758

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            N++                                   +     R     ++       
Sbjct: 759 MNDII--------------------------HVGTEKGYVETLLHRRRYIPELKAKNF-- 790

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634
                   R            +Q  + DI+   M+              ++L +HDE+V 
Sbjct: 791 -NIRSFGERIA------LNTPIQGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVV 843

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAK--GLPLKA 665
           + PD +    + +  +M      A    +PL  
Sbjct: 844 DAPDEE---VAEVCEIMKDVMDNALIMKVPLSV 873


>gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c]
 gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c]
          Length = 971

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/662 (15%), Positives = 178/662 (26%), Gaps = 132/662 (19%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
           V   A           D        +  L   L +      AH+       L       +
Sbjct: 419 VAGIALAPPKGKAAWIDPTQLTPADEQALAGWLADPAKPKAAHDVKGPMLALAE-LGFTL 477

Query: 89  PIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
                  T + A           L  +         K +E           E        
Sbjct: 478 A-GVTSDTALAAYLALPGQRSFDLGDLVLRYLHRELKADEAPSDGQLTLDVEVEGVEESA 536

Query: 146 NKPNHREAWRLFGEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                    R  GE     D  + R        L   E  L  +   +   G   D    
Sbjct: 537 EAEVDVVRARAVGELADALDGDLERR--SAARLLRDIELPLLTVLAGMERAGIAADAEYL 594

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261
             L      E TK+ +    +      +    ++L+  LF E GL      +T   T   
Sbjct: 595 ADLQSQYGTEVTKVVEAAHEIVGRP-FNLGSPKQLQQILFEELGLPKTKKIKTGYTTDAD 653

Query: 262 VLSSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            L+        P    +  +R   +R     + +L+  ++  GR+  T   + A+ TGR 
Sbjct: 654 ALAWLATNSEHPLIPTLLRHR-DVARLK-TVVESLLPMIDDAGRIHTTFNQMIAA-TGRL 710

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVV 378
           S      QN+P  +                              +R   +   G   L+ 
Sbjct: 711 SSTDPNLQNIPIRTAEGR-------------------------QIRRAFVVGPGYETLLT 745

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G+   ++AF +GEDL+    A++FN+  A+V  + R   K M   
Sbjct: 746 ADYSQIEMRIMAHLSGDAGLIEAFASGEDLHTFVAAQAFNLPVAEVDPELRRRIKAMSYG 805

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            GL+                                  A +   
Sbjct: 806 --------------LAYGLS------------------------------AYGLATQLGI 821

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                    +A+  +   V +    +     +                          + 
Sbjct: 822 HPDEARDQMEAYFARFGGVRDFLRGVVDQARK--------------------------DG 855

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                 GR     D+ ++ S          R            +Q  + DI+   M+   
Sbjct: 856 YTETILGRRRYLPDLTSDNSQRRQM---AERMALNAP------IQGSAADIIKIAMLGVD 906

Query: 619 K------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESK 671
           +          ++L VHDE+V E    +   A  L    M +   +   +PL+       
Sbjct: 907 RGLRDAGLRSRLLLQVHDELVLEIAPGERERAEALVRAEMANA--YTMSVPLEVSVGSGH 964

Query: 672 RY 673
            +
Sbjct: 965 TW 966


>gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200]
          Length = 877

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   +                G++    ++                           
Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 725 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 865

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/657 (12%), Positives = 187/657 (28%), Gaps = 132/657 (20%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA--CF 84
           D  +  FA    ++  E          P  L + L   +   V     ++          
Sbjct: 327 DATLYGFALS-KENKNEYITLEDARKDPAFL-QYLATKNDKAV-----YDAKNFYHACHK 379

Query: 85  NLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           N  I +      ++ A       +  + + E             +      KG+     +
Sbjct: 380 NNLIAVDVNFDIMLAAFLVDQTISDYEKLAEKYHFDQ----SIHKEDIYGKKGKPKLIDF 435

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
            +                   +  T +  +  +   + E  L  +   +   G   D A+
Sbjct: 436 AQQSKYAMLQAENLYSIVAL-LDETLQEMEMKDLFDTIEMPLTRVLYAMEKEGVYCDKAV 494

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
              +    + +   L  ++  +      +    ++L + L+ E GL       +T   VL
Sbjct: 495 LQKIADETEAKINALSLQIYEIAGM-EFNINSPKQLASVLYDELGLKAGKKR-STAADVL 552

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                + P    +  +R +  +        L + + +DG++      +  ++TGR S   
Sbjct: 553 EKLVHVHPIIPLLLEHR-KYQKIYSTYAIGLAKHILADGKIHTLFNQIQ-TQTGRLSSSE 610

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+   +   +                          +R   +ASEG  L+ AD + 
Sbjct: 611 PNLQNISVRNEEGKG-------------------------IRKAFVASEGHVLLSADYSQ 645

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA MA E+  + AF    D++  T  + F+VA  +V  + R   K +        
Sbjct: 646 IELRMLAHMADEEQMIDAFNHDIDIHTKTAMQIFDVAHDEVDANMRRSAKTVN------- 698

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G +    +                                        
Sbjct: 699 -------FGIVYGQSDFGLSEQ------------------------------LGISRKEA 721

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
               + +   + ++    +      E+                          +  +   
Sbjct: 722 HTFIEKYFASYPKIKTFMDATIAYCEE--------------------------HGYVKTL 755

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618
             R    +++ +    +    +   R            +Q  + D++   M++       
Sbjct: 756 YNRRRYIKEIADKNYMMREFGK---RAAMNAP------IQGSAADLIKMAMIHIYQKMQE 806

Query: 619 -KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
            K    ++L +HDE++ +  + +    + +    M +       +PL A+    K +
Sbjct: 807 EKVKSRMILQIHDELIFDVCEDEIDKMTQIVEEGMQNVMK--LKVPLIAQANIGKSW 861


>gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
 gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica]
 gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246]
          Length = 875

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/632 (13%), Positives = 184/632 (29%), Gaps = 146/632 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++   L +  +  + ++      +LK   N    I       ++  +     + K + +
Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK 431

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  K    + +I    K   +     +      +  + F  Y   D          
Sbjct: 432 ----EVLKETWIENIIIASAKIVINFIALYKQTIWELKDNKTFRLYSNID---------- 477

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                     + ++   +   G  VD      L+     E  KL++E+ +L+     +  
Sbjct: 478 --------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIG 528

Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             ++L   LF +  L          + +T   +L    +       +     + ++    
Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             ++L + +++      T     ++ TGR S      QN+P  S                
Sbjct: 589 YTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGN------------ 636

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++
Sbjct: 637 -------------QIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T  + FN+   ++T + R   K +                    G++           
Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 718

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                  A +            K +  ++  V E   +      
Sbjct: 719 -------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA- 758

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                                     +N  +    GR      + + +       +   R
Sbjct: 759 -------------------------SSNGYVTNCFGRKCFVPLIHDKK-----LKQFAER 788

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+N        K    +VL +HDE++ E P  +   
Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEI 842

Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
              ++  +M ++ + A  +P+  E      + 
Sbjct: 843 ITPIIKKIMENSTNMA--VPIITEIRAGNNWM 872


>gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata]
 gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata]
          Length = 1786

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/712 (15%), Positives = 193/712 (27%), Gaps = 189/712 (26%)

Query: 2    ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--------DPVM 53
              + +D ET      T            + L      + P  + D           D V+
Sbjct: 1220 KAVGVDIETTGLDHNTN----------QIRLVQLSVPNQPSVIIDLFKLNTNNPESDNVV 1269

Query: 54   P--------QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
            P        + LK   ++ D   V HN  F+   L   +  +        T+V ++    
Sbjct: 1270 PGRNELIKCEWLKNLFKSKDTVKVFHNGKFDINFL-RVYGFEFE-GPIFDTMVASKLLVA 1327

Query: 106  PS----ALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   L  V E  L +   K ++  +                       + +     Y
Sbjct: 1328 SRYISCKLTHVSERYLNIVLDKTQQYSDWSTL-------------------QLFEEQLLY 1368

Query: 161  CKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIV 211
               D  V   ++  LE L              +       +   G  VD      L   +
Sbjct: 1369 SARDSFVLLPLYVILEHLLKINNLADIASVENKCILATSDMELNGIKVDEDKLRILQDEL 1428

Query: 212  DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268
              E  ++  +L S       +    +++   L  E  +      +    T +  L   + 
Sbjct: 1429 KQEHQEISNDLYSQLNHSEINLNSQKQVLEKL-QELKIMDRSKKKIISDTSESTL--IRN 1485

Query: 269  LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            ++   I       +A+++       L   +N    R+      LGA   GR+S      Q
Sbjct: 1486 MSNPIISSLREYRKANKALTAFTQKLPNHINPITKRIYPNYNQLGAES-GRFSCDGPNLQ 1544

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             +PR                                 R C +A +G K V+AD + IE R
Sbjct: 1545 QVPRD-----------------------------KKFRECFVAPKGSKFVIADFSQIELR 1575

Query: 388  VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
            + A +A +   ++A++   DL+  T +   N +  +V K++R + K +   L +      
Sbjct: 1576 IAAEIANDPKMIQAYQQNVDLHSLTASILKNKSINEVNKEERQLAKAVNFGLIFGMSING 1635

Query: 448  FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             +  A                                      E         T  + + 
Sbjct: 1636 LRMYA--------------------------------------ETGYNLKLTQTEAKEIY 1657

Query: 508  KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             ++      +    N +             +     R                       
Sbjct: 1658 TSFFNNFKGILNWHNSVKN------SRPTMVRTLGNRLSVFESFSFT------------- 1698

Query: 568  LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYD 623
                                        +     VQ  S DI  E M             
Sbjct: 1699 ----------------------------RSLNYPVQGTSADITKETMARLVDSVKPLNAK 1730

Query: 624  IVLTVHDEIVCETPDT-DEFNASMLYHLM-TSNPSWAKGLPLKAEGYESKRY 673
            I++ VHDEI+ E P+   E    ML   M  S   + K +P++A G     +
Sbjct: 1731 IIICVHDEIILEVPEDNAEKALKMLIDTMVKSGEKYLKKVPVEAMGSIGDSW 1782


>gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
 gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B]
          Length = 885

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/633 (12%), Positives = 180/633 (28%), Gaps = 127/633 (20%)

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
             ++      LK   E+  +  + ++   +  VL     +D+  +    +++        
Sbjct: 354 IDYNKDNLSNLKALWEDDSIEKLGYDLKEDIIVL-QYNKIDLK-NYCHDSMIAEYLLNST 411

Query: 107 SAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            +      +  +    + K EE         K        D N         ++      
Sbjct: 412 ESNYEIDHLASSYFNKAYKSEEELLGKGVKKKKFQEIDEGDLNSYFSYILNMVYKISPLQ 471

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              +  E     +   + E  L  +   +   G   DV + + +++ +      L+  + 
Sbjct: 472 MQKIEAE--GMKDLYVNVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIY 529

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
                   +    ++L   LF +  L +   T+   +T   VL   +  +     +   R
Sbjct: 530 KD-ADEQFNINSPKQLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYR 588

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            + S+     ++ L + +N       +      + TGR S      QN+P  +       
Sbjct: 589 -KISKIKNTYIDGLRDVINKKTGRIHSRFNQTVTSTGRISSTEPNLQNIPIKTHEGR--- 644

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R  +++SEG  LV +D + IE RVLA ++ + + + 
Sbjct: 645 ----------------------LIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMIN 682

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G D++  T +  F+    +V+ + R++ K +   + Y              GL+  
Sbjct: 683 AFADGLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYGIS---------DYGLS-- 731

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                      +     +      + + 
Sbjct: 732 ---------------------------------QNLNIPRKEAKTYIDNYLGHFQGIKKY 758

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            N++                                   +     R     ++       
Sbjct: 759 MNDII--------------------------HVGTEKGYVETLLHRRRYIPELKAKNF-- 790

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVC 634
                   R            +Q  + DI+   M+              ++L +HDE+V 
Sbjct: 791 -NIRSFGERIA------LNTPIQGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVV 843

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAK--GLPLKA 665
           + PD +    + +  +M      A    +PL  
Sbjct: 844 DAPDEE---VAEVCEIMKDVMDNALIMKVPLSV 873


>gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA]
 gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06]
 gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA]
          Length = 877

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 186/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+  +D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCEDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYMQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPDIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali]
          Length = 875

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/632 (13%), Positives = 182/632 (28%), Gaps = 146/632 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++   L +  +  + ++      +LK   N    I       ++  +     + K + +
Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK 431

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  K    + +I    K   +     +      +  + F  Y   D          
Sbjct: 432 ----EVLKETLIENIIIESAKIVINFISLYKQTILELKDNKTFRLYSDID---------- 477

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                     + ++   +   G  VD      L+     E  KL++E+ +L+     +  
Sbjct: 478 --------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIG 528

Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             ++L   LF +  L          + +T   +L    +       +     + ++    
Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             ++L + +++      T     ++ TGR S      QN+P  S                
Sbjct: 589 YTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNIPIRSSEGN------------ 636

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++
Sbjct: 637 -------------QIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T  + FN+   ++T + R   K +                    G++    A  +   
Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAINF--------------GIIYGISAFGLAKQLNA- 728

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                 K +  ++  V E   +      
Sbjct: 729 -----------------------------TNGEASEYIKKYFAEYKGVQEYMEQTKAFA- 758

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                                     +N  +    GR      + + +       +   R
Sbjct: 759 -------------------------SSNGYVTNFFGRKCFVPLIHDKK-----LKQFAER 788

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+N        K    +VL +HDE++ E P  +   
Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEI 842

Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
              ++  +M +  S    +P+  E      + 
Sbjct: 843 ITPIIKKIMEN--STNMDVPIITEIRAGNNWM 872


>gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70]
 gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016]
 gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375]
          Length = 877

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   +                G++    ++                           
Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 725 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
 gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii]
 gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa]
          Length = 875

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/632 (13%), Positives = 182/632 (28%), Gaps = 146/632 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++   L +  +  + ++      +LK   N    I       ++  +     + K + +
Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDIKAIEDLELMQYALSAGLSQKNLFK 431

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  K    + +I    K   +     +      +  + F  Y   D          
Sbjct: 432 ----EVLKETWIENIIIESAKIVINFITLYKQTIWELKDNKTFRLYSNID---------- 477

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                     + ++   +   G  VD      L+     E  KL++E+ +L+     +  
Sbjct: 478 --------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIG 528

Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             ++L   LF +  L          + +T   +L    +       +     + ++    
Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             ++L + +++      T     ++ TGR S      QN+P  S                
Sbjct: 589 YTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGN------------ 636

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++
Sbjct: 637 -------------QIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T  + FN+   ++T + R   K +                    G++           
Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 718

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                  A +            K +  ++  V E   +      
Sbjct: 719 -------------------AFGLAKQLNVTHGEASAYIKKYFAEYKGVQEYMEQTKAFA- 758

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                                     +N  +    GR      + + +       +   R
Sbjct: 759 -------------------------SSNGYVTNCFGRKCFVPLIHDKK-----LKQFAER 788

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+N        K    +VL +HDE++ E P  +   
Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEI 842

Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
              ++  +M +  S    +P+  E      + 
Sbjct: 843 ITPIIKKIMEN--STNMDVPIITEIRAGNNWM 872


>gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 930

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/634 (12%), Positives = 183/634 (28%), Gaps = 149/634 (23%)

Query: 62  ENTDVTIVA-HNSYFERTVLKAC-----FNLDIPIHRWICTLVLARSNGL---PSALKAV 112
           E+     +A +N      + K       ++LD     +  T ++A        P +++ +
Sbjct: 414 EDAPKLKIASYNIKRIWHLFKNNTELDLYDLDTNKFLFYDTELMAYLLEPTEAPHSIEDM 473

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                    +     +L       +                  +  E  +       +++
Sbjct: 474 -------MNRYYGQFDLTPYGQDWQAVCERGAILLDLISPLEDILQERNQ------WQLY 520

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           K      + E  L ++   +  RG  VD  +   +   +D   +++  ++  +      +
Sbjct: 521 K------NIELPLAFILARMEFRGIKVDARVLTEMEANIDHRLSEISTKIFEIAG-EEFN 573

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L   LF +  L +   T+   +T  + L +          + + R    +    
Sbjct: 574 LNSPKQLGYILFEKLQLPVVKKTKTGYSTDAKTLETLSHDYEICKLLLDYRQ-LHKLKTT 632

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            L  L + ++       T      + TGR S      QN+P       +           
Sbjct: 633 YLVGLKDLISKTTGKIHTTYNQTITATGRLSSTDPNLQNIPIKLEEGRK----------- 681

Query: 350 ITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +R   +     +  + AD + IE R+LA ++ +   ++AF+  +D+
Sbjct: 682 --------------IRKGFVIQNSDQLFLAADYSQIELRILAHVSEDTNLIQAFQEQQDI 727

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T A+ F V   QVT++ R+  K +   + Y              GL+          
Sbjct: 728 HTQTAAQVFEVESTQVTREMRSHAKAVNFGIVYGIS---------DYGLS---------- 768

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                     +        +     +  + S V E  +++    
Sbjct: 769 -------------------------RQLGISRKQAKTYIDNYLTRFSGVKEYMDQIVNQA 803

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           +  +      +                          R     D+ +             
Sbjct: 804 K--MNGYVETLYN------------------------RRRNLPDISHRNF---NIRSAAE 834

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--------IVLTVHDEIVCETPDTD 640
           R            +Q  + DI+ + M+   K            ++L VHDE++ E     
Sbjct: 835 RTAINTP------IQGTAADIIKDAMVKVEKELEKQDLLDKAALLLQVHDELILEINKEV 888

Query: 641 EFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             + +  +  +M +       +PL  +      +
Sbjct: 889 LSDVATKVKEIMENIIE--LKVPLTVDLKTGPNW 920


>gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
 gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261]
          Length = 877

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 97/667 (14%), Positives = 197/667 (29%), Gaps = 148/667 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFN 85
            ++ F++   D   +L+      ++ + + +A        V     ++     VL   F 
Sbjct: 333 DLVGFSWSCGD---KLYATDKLELLQEPIFKAFLEKTPLRV-----YDFKKAKVLLNRFG 384

Query: 86  LDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
           +D+       + +             + + ++     L   +   GK +     + E   
Sbjct: 385 VDLQ-APAFDSRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFYGKGVKKAIPEREKFL 443

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
               R      E   +  E    +  +   ++         EQ L ++   +   G  V 
Sbjct: 444 EHLARKIAVLVETEPVLLEKLSENGQLEL-LY-------DMEQPLAFVLAKMEIAGIKVK 495

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    ++   KL QE+  L      +    ++L   LF +  L L     T+  
Sbjct: 496 KETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLELPLEYTKKTKTG 554

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++
Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-LTQ 612

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R   +   E  
Sbjct: 613 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEREDS 647

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433
            L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   K
Sbjct: 648 VLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAK 707

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   +                G++    ++                             
Sbjct: 708 AVNFGVV--------------YGISDFGLSN----------------------------- 724

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                     +     + ++   +    +E+ +                           
Sbjct: 725 -NLGISRKGAKAYIDTYFERFPGIKNYMDEVVREARD----------------------- 760

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +     R     D+ +             R            +Q  + DIL   
Sbjct: 761 ---KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILKIA 808

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           M+   KA         ++L VHDEIV E P ++      L    M         +PL A+
Sbjct: 809 MIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQ--LSVPLIAD 866

Query: 667 GYESKRY 673
             E   +
Sbjct: 867 ENEGATW 873


>gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54]
 gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54]
          Length = 877

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   +                G++    ++                           
Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 725 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 894

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 104/668 (15%), Positives = 192/668 (28%), Gaps = 133/668 (19%)

Query: 23  KYAEDVCVILFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79
                  +   A    D      D      D    + L   L +      AH+       
Sbjct: 338 WSRGSGDLDGLALVTADGAGAFVDARTLTDDDE--RALSAWLADPAFPKAAHDVKGPLHA 395

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKG 136
           +       +       T + A           L  +         + E+G++        
Sbjct: 396 V-RDRGWKLAGLS-SDTALAAYLVRPGQRSFDLPDLVVRYLQRELRAEQGEDDGQLSLLE 453

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
           +  +            A  +       D  + R        L+  E  L  +   +   G
Sbjct: 454 DEEQTKAGAAASELVRARAVAELADTLDDELARI--DSTRLLTELELPLLQVLSELEAAG 511

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      L         +  Q+   +    + +    ++L+  LF E G+     T+
Sbjct: 512 IAVDADQLAGLGAHFAARVKQAAQDAYGVIGKEI-NLGSPKQLQVVLFDELGMPKTKRTK 570

Query: 257 T---TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T   T    L S  +    P    +  +R  A+R     ++ LV+++  DGR+  TL   
Sbjct: 571 TGYTTDAEALQSLYEKTEHPFLQHMLEHR-DATRLKTT-VDGLVKSIADDGRIHTTLNQT 628

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
            A+ TGR S      QN+P  +                              +R   +  
Sbjct: 629 IAA-TGRLSSTEPNLQNIPIRTEEGRR-------------------------IREVFVVG 662

Query: 372 EGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           EG  +L+ AD + IE R++A ++G++  ++AF TGEDL+    +R+F V   +V  + R 
Sbjct: 663 EGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAFGVPIDEVDHELRR 722

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K M                    GL+    A                           
Sbjct: 723 RVKAMSY--------------GLAYGLSAFGLAQQ------------------------- 743

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                            +A+  +   V +   ++     +                    
Sbjct: 744 -----LRISTEDAREQMEAYFARFGSVRDYLRDVVDQARK-------------------- 778

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                 +       GR     D+ ++            R            +Q  + DI+
Sbjct: 779 ------DGYTSTILGRRRYLPDLNSDN---RQRRDMAERMALNAP------IQGSAADII 823

Query: 611 AEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
              M++  +A       ++L VHDE++ E  D +      L    M +   +A  +PL+ 
Sbjct: 824 KVAMLDVHEALRPLRSRMLLQVHDELIIEVADGEREEVERLVRERMGAA--YALDVPLEV 881

Query: 666 EGYESKRY 673
                  +
Sbjct: 882 SVGVGGSW 889


>gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
 gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338]
          Length = 895

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 104/668 (15%), Positives = 192/668 (28%), Gaps = 133/668 (19%)

Query: 23  KYAEDVCVILFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79
                  +   A    D      D      D    + L   L +      AH+       
Sbjct: 339 WSRGSGDLDGLALVTADGAGAFVDARTLTDDDE--RALSAWLADPAFPKAAHDVKGPLHA 396

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKG 136
           +       +       T + A           L  +         + E+G++        
Sbjct: 397 V-RDRGWKLAGLS-SDTALAAYLVRPGQRSFDLPDLVVRYLQRELRAEQGEDDGQLSLLE 454

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
           +  +            A  +       D  + R        L+  E  L  +   +   G
Sbjct: 455 DEEQTKAGAAASELVRARAVAELADTLDDELARI--DSTRLLTELELPLLQVLSELEAAG 512

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      L         +  Q+   +    + +    ++L+  LF E G+     T+
Sbjct: 513 IAVDADQLAGLGAHFAARVKQAAQDAYGVIGKEI-NLGSPKQLQVVLFDELGMPKTKRTK 571

Query: 257 T---TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T   T    L S  +    P    +  +R  A+R     ++ LV+++  DGR+  TL   
Sbjct: 572 TGYTTDAEALQSLYEKTEHPFLQHMLEHR-DATRLKTT-VDGLVKSIADDGRIHTTLNQT 629

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
            A+ TGR S      QN+P  +                              +R   +  
Sbjct: 630 IAA-TGRLSSTEPNLQNIPIRTEEGRR-------------------------IREVFVVG 663

Query: 372 EGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           EG  +L+ AD + IE R++A ++G++  ++AF TGEDL+    +R+F V   +V  + R 
Sbjct: 664 EGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAFGVPIDEVDHELRR 723

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K M                    GL+    A                           
Sbjct: 724 RVKAMSY--------------GLAYGLSAFGLAQQ------------------------- 744

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                            +A+  +   V +   ++     +                    
Sbjct: 745 -----LRISTEDAREQMEAYFARFGSVRDYLRDVVDQARK-------------------- 779

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                 +       GR     D+ ++            R            +Q  + DI+
Sbjct: 780 ------DGYTSTILGRRRYLPDLNSDN---RQRRDMAERMALNAP------IQGSAADII 824

Query: 611 AEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
              M++  +A       ++L VHDE++ E  D +      L    M +   +A  +PL+ 
Sbjct: 825 KVAMLDVHEALRPLRSRMLLQVHDELIIEVADGEREEVERLVRERMGAA--YALDVPLEV 882

Query: 666 EGYESKRY 673
                  +
Sbjct: 883 SVGVGGSW 890


>gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
 gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6]
          Length = 877

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/670 (14%), Positives = 187/670 (27%), Gaps = 154/670 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83
            ++ FA+   D             + Q    K+ LE T + +      ++     VL   
Sbjct: 333 DLVGFAWSCGDK----LYATDKLELLQEPIFKDFLEKTPLRV------YDFKKAKVLLNR 382

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           F +D+       + +                        +               +    
Sbjct: 383 FGVDLQ-APAFDSRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGV 432

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGY 197
            +  P   +            V     + ++L            EQ L ++   +   G 
Sbjct: 433 KKAIPEREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGI 492

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLT 255
            V       +    ++   KL QE+  L      +    ++L   LF +  L L     T
Sbjct: 493 TVKKETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLALPLEYTKKT 551

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL     + P   ++ + R   ++     +  L + + +DG++        
Sbjct: 552 KTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD- 609

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P                                 +R   +   
Sbjct: 610 LTQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEW 644

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 645 ENSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRR 704

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   +                G++    ++                          
Sbjct: 705 NAKAVNFGVV--------------YGISDFGLSN-------------------------- 724

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                        +     + ++   +    +E+ +                        
Sbjct: 725 ----NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD-------------------- 760

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                    +     R     D+ +             R            +Q  + DIL
Sbjct: 761 ------KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADIL 805

Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPL 663
              M+   KA         ++L VHDEIV E P ++      L    M         +PL
Sbjct: 806 KIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQ--LSVPL 863

Query: 664 KAEGYESKRY 673
            A+  E   +
Sbjct: 864 IADENEGATW 873


>gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5]
 gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5]
          Length = 875

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/632 (13%), Positives = 184/632 (29%), Gaps = 146/632 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++   L +  +  + ++      +LK   N    I       ++  +     + K + +
Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK 431

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  K    + +I    K   +     +      +  + F  Y   D          
Sbjct: 432 ----EVLKEPWIENIIIESAKIVINFIALYKQTIWELKDNKTFRLYSNID---------- 477

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                     + ++   +   G  VD      L+     E  KL++E+ +L+     +  
Sbjct: 478 --------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIG 528

Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             ++L   LF +  L          + +T   +L    +       +     + ++    
Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             ++L + +++      T     ++ TGR S      QN+P  S                
Sbjct: 589 YTDSLPKQIDNITHKVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGN------------ 636

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++
Sbjct: 637 -------------QIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T  + FN+   ++T + R   K +                    G++           
Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 718

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                  A +            K +  ++  V +   +      
Sbjct: 719 -------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQKYMEQTKAFA- 758

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                                     +N  +    GR      + + +       +   R
Sbjct: 759 -------------------------SSNGYVTNCFGRKCFVPLIHDKK-----LKQFAER 788

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+N        K    +VL +HDE++ E P  +   
Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEI 842

Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
              ++  +M ++ + A  +P+  E      + 
Sbjct: 843 ITPIIKKIMENSTNMA--VPIITEIRAGNNWM 872


>gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis]
          Length = 875

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 87/630 (13%), Positives = 180/630 (28%), Gaps = 146/630 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +   L +  +  + ++      +LK   N    I       ++  +     + K + +  
Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK-- 431

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                K      +I    K   +     +      +  + F  Y   D            
Sbjct: 432 --EVLKETLIDNIIIESAKIVINFISLYKQTILELKDNKTFRLYSNID------------ 477

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                   + ++   +   G  VD      L+     E  KL++E+ +L+     +    
Sbjct: 478 ------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIGSP 530

Query: 237 EKLKTWLFLETGLHLED---LT--ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           ++L   LF +  L        T   +T   +L    +       +     + ++      
Sbjct: 531 KQLGEILFEKMQLPFGKASAKTSSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYT 590

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++L + +++      T     ++ TGR S      QN+P  S                  
Sbjct: 591 DSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGN-------------- 636

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++  
Sbjct: 637 -----------QIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQ 685

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T  + FN+   ++T + R   K +                    G++             
Sbjct: 686 TACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS------------- 718

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                A +            K +  ++  V E   +        
Sbjct: 719 -----------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA--- 758

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                   +N  +    GR      + + +       +   R  
Sbjct: 759 -----------------------SSNGYVTNFFGRKCFVPLIHDKK-----LKQLAERAA 790

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA- 644
                     +Q  + DI+   M+N        K    +VL +HDE++ E P  +     
Sbjct: 791 INAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIIT 844

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            ++  +M +  S    +P+  E      + 
Sbjct: 845 PIIKKIMEN--STNMDVPIITEIRAGNNWM 872


>gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054]
          Length = 895

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 92/678 (13%), Positives = 172/678 (25%), Gaps = 152/678 (22%)

Query: 23  KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
                  V   A                    +     L +       H +     V++A
Sbjct: 338 WALGSGEVEQIALATGTAAAWFDPAALAEADDRAFTAWLADPKRPKALHIAK---QVMRA 394

Query: 83  CFNLDIPIHRW-ICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                         T + A           L  + E              L         
Sbjct: 395 FAERGWSFAGVTADTALAAYLEKPGRRAFTLDVLAEEY------------LGRSLAPATA 442

Query: 139 HECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFKRLEPLS----------SKEQELWY 187
                  +     E     G            ++    +               E  +  
Sbjct: 443 QAETGQLSFD-ADEPDPTAGAQALMTRARAVHDLAGLFDTRLAEVGAVELFHDMELPIAE 501

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           L   +   G   D      L      E  +  +E  +       +    ++L+  LF + 
Sbjct: 502 LLARMERHGIAADREWLRGLEAQFAAEIQRCVEEAHAAAG-REFNLGSPKQLQEILFGDL 560

Query: 248 GLHLEDLTET---TCQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           GL      +T   T    L+    + T +   +       ++     +  L++ ++  GR
Sbjct: 561 GLPKTKKIKTGYTTDADALTWLATQTTNELPVILLRHRDQAKLRTT-VEGLLKTVSPQGR 619

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +  T   + A+ TGR S      QN+P  +                              
Sbjct: 620 IHTTFNQMVAA-TGRLSSQDPNLQNIPVRTEEGRA------------------------- 653

Query: 364 VRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG   L+ AD + IE R++A ++ ++  ++AF +GEDL+ T  ++ F VAPA
Sbjct: 654 IRRAFVVGEGYETLLTADYSQIELRIMAHLSEDEALIEAFTSGEDLHTTVASQVFAVAPA 713

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            V  + R   K M                    GL+    +  +    A           
Sbjct: 714 DVDAEMRRKIKAMSY--------------GLAYGLSAYGLSQQLGIKPA----------- 748

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +   + ++   V +  + + +                
Sbjct: 749 -------------------EAQGLMDTYFERFGGVRDYLHNVVEEAR------------- 776

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                 GR     D+ ++            R            +
Sbjct: 777 -------------AVGYTETLLGRRRYLPDLTSDN---RQRREMAERMALNAP------I 814

Query: 603 QAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           Q  + DI+   M+   +A         ++L VHDEIV E    +      L    M    
Sbjct: 815 QGSAADIVKIAMLRVDEALRTAGLTSRMLLQVHDEIVLEVAPGERERVEALVREQMAGA- 873

Query: 656 SWAKGLPLKAEGYESKRY 673
            +    PL         +
Sbjct: 874 -YPLRAPLDVSVGAGADW 890


>gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
 gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093]
          Length = 867

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 103/634 (16%), Positives = 184/634 (29%), Gaps = 156/634 (24%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLPSAL- 109
           P+   E L + +V    H +  +   L        L++        L++A      +A  
Sbjct: 372 PERALELLRSEEVL---HAA--DAKALAVYAQRCGLEVRPG--DDPLLMAYVLDPSAADP 424

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           + +                  A             R                       R
Sbjct: 425 ETLTRRYGTP--------AWGATAVARAVATAELSRTLRPKL-------------AGALR 463

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            ++         E+ +  +   +   G  +D A     ++ +  +   L++E+  L    
Sbjct: 464 RLY------EEIERPVAEVLAHMEVTGVRLDTAALAAQSESLAEKLAALEREVRELAGNP 517

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    ++L   LF +  L     T     +T    L   K   P    +   R   ++
Sbjct: 518 NLNLNSRDQLAELLFEKLELQAGRKTSTGKRSTAVSALEPLKDAHPVVPLILEYR-ELAK 576

Query: 286 SAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
                L+ L   +N   GRL  T     A+ TGR S      QN+P  +    E      
Sbjct: 577 LKSTYLDPLPRLINPHTGRLHTTFNQ-TATATGRLSSANPNLQNIPVRTAVGRE------ 629

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                              +R   +A EG  L+VAD + IE R+LA + GE+  ++ F  
Sbjct: 630 -------------------IRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRR 670

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++  T A+ F V P  VT + R + KV+                    G++      
Sbjct: 671 GEDIHRRTAAQIFGVPPEAVTPEGRRVAKVIN--------------FGVLYGMS------ 710

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                       A E        +   +++ + + +V    +E 
Sbjct: 711 ------------------------AHRLARELSIPYAEADAFIRSYFEGYPKVRAYIDET 746

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                                              +    GR     D+ ++        
Sbjct: 747 LAFARD--------------------------KGYVETLFGRRRPIPDIRSSN---RNAR 777

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVC-ETPDT 639
               R            +Q    DI+   M+         G  ++L VHDE+V       
Sbjct: 778 EYAERTAYNMP------IQGTQADIVKLAMVRLLPRLKAHGAKLLLQVHDELVLEAPEGA 831

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E  A+ +  +M     +A  +PL AE    + +
Sbjct: 832 AEAVAAEVKAVMEGA--FAMRVPLVAEVGRGRNW 863


>gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
 gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113]
          Length = 920

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 101/687 (14%), Positives = 181/687 (26%), Gaps = 142/687 (20%)

Query: 8   FETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTD 65
            E+     L    +  +A     V   A      P   +D        +    E + + D
Sbjct: 350 LESHRDAPLGLATVDTWALGSGSVSEIALATGSGPAAFFDPSQLDEADERTFAEWIADPD 409

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQK 122
              V HN+     V        +       T + A           L A+          
Sbjct: 410 RPKVLHNAKGIMRVFAEH-GWSVAGVTM-DTALAAYLVKPGRRSFELDALSVEY------ 461

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLS- 179
              G+EL                ++                D+       +         
Sbjct: 462 --LGRELSPAVAADSGQLAFGADDEAERDALMIKART--ILDLGEAFGGRLKDVGAAGLL 517

Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  +  L   +   G   D      + Q          QE  +       +    ++
Sbjct: 518 HDMELPVSELLARMERSGIAADRGWLERMEQQFAAAVQHAVQEAHAAVGH-EFNLGSPKQ 576

Query: 239 LKTWLFLETGLHLEDLTETT---CQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTL 294
           L+  LF E GL     T+T        L+        +   +       +R     +  L
Sbjct: 577 LQEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHELPVIMLRHREQARLRST-VEGL 635

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ +    R+  T     A+ TGR S      QN+P  +                     
Sbjct: 636 IKTIAPGSRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGRA---------------- 678

Query: 355 DPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    +R   +  +G + L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T  
Sbjct: 679 ---------IRRGFVVGDGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVA 729

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           ++ F+V  + V  + R   K M   L                GL+    +          
Sbjct: 730 SQVFSVDKSAVDPEMRRKIKAMSYGL--------------AYGLSAFGLSQQ-------- 767

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                          ++ + + ++   V +    L +  E+   
Sbjct: 768 ----------------------LGITPDEARKLMENFFERFGGVRDY---LQRVVEEARA 802

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
            G                             GR     D+ ++            R    
Sbjct: 803 TGYTETML-----------------------GRRRYLPDLTSDN---RQRREMAERMALN 836

Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASML 647
                   +Q  + DI+   M+         K    ++L VHDEIV E    +      L
Sbjct: 837 AP------IQGTAADIVKIAMLKVDAALTGEKLSSRMLLQVHDEIVLEIAPGERERVEEL 890

Query: 648 Y-HLMTSNPSWAKGLPLKAEGYESKRY 673
               MT    +    PL         +
Sbjct: 891 VRREMTGA--FGLSAPLDVSVGSGSDW 915


>gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I)
           [Deinococcus deserti VCD115]
          Length = 923

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 92/592 (15%), Positives = 154/592 (26%), Gaps = 148/592 (25%)

Query: 94  ICTLVLARSNGLPSA-LKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
              L+ A      +  +  V    L +       G+                 R+ P  +
Sbjct: 464 DDPLLHAYLLDPSNTTMATVTPRYLGVPWPADAAGRA---------AVTARLLRDLPP-Q 513

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                   Y                     E+ L  +   +  RG  +D      L    
Sbjct: 514 LDEARTKLYAG------------------MEKPLAAVLTRMEVRGVRLDSEYIRGLAGAA 555

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSN 266
                 L+ E+         S R   +L+T L+ E GL     T+     +T    L   
Sbjct: 556 AARLAALETEIHQHVG-REFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEPL 614

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           +   P    V   R    +     L+ L   +N       T     A  TGR S      
Sbjct: 615 RDEHPVIPLVLEFR-ELDKLRGTYLDPLPSLVNPRTGRLHTTFAQTAVATGRLSSLNPNL 673

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  S    E                         +R   IA +G  L+ AD + IE 
Sbjct: 674 QNIPIRSEMGRE-------------------------IRKGFIADKGYCLISADYSQIEL 708

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +A +    +AF  G D++  T A+   +    VT  QR   K +           
Sbjct: 709 RLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNF--------- 759

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  + E           
Sbjct: 760 -----GVLYGMS------------------------------AHRLSNELGISYVEAAGF 784

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + +   +  +      + +  E     G                             GR
Sbjct: 785 IETYFNTYPGIRGY---IDRTLEFGRTQGYVETMY-----------------------GR 818

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622
                ++               R            +Q  + DI+   M+   +     G 
Sbjct: 819 RRYVPELAATN---RNVREAGERLAYNMP------IQGTAADIIKHAMIRLDRELEALGG 869

Query: 623 DIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E P+    + + L   +M         +PL  E      +
Sbjct: 870 RLLLQVHDELLIEAPENRAEDVARLTREVMEGAAK--LSVPLAVEVGTGPNW 919


>gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115]
          Length = 926

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 92/592 (15%), Positives = 154/592 (26%), Gaps = 148/592 (25%)

Query: 94  ICTLVLARSNGLPSA-LKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
              L+ A      +  +  V    L +       G+                 R+ P  +
Sbjct: 467 DDPLLHAYLLDPSNTTMATVTPRYLGVPWPADAAGRA---------AVTARLLRDLPP-Q 516

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                   Y                     E+ L  +   +  RG  +D      L    
Sbjct: 517 LDEARTKLYAG------------------MEKPLAAVLTRMEVRGVRLDSEYIRGLAGAA 558

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSN 266
                 L+ E+         S R   +L+T L+ E GL     T+     +T    L   
Sbjct: 559 AARLAALETEIHQHVG-REFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEPL 617

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           +   P    V   R    +     L+ L   +N       T     A  TGR S      
Sbjct: 618 RDEHPVIPLVLEFR-ELDKLRGTYLDPLPSLVNPRTGRLHTTFAQTAVATGRLSSLNPNL 676

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  S    E                         +R   IA +G  L+ AD + IE 
Sbjct: 677 QNIPIRSEMGRE-------------------------IRKGFIADKGYCLISADYSQIEL 711

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA +A +    +AF  G D++  T A+   +    VT  QR   K +           
Sbjct: 712 RLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNF--------- 762

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G++                                  + E           
Sbjct: 763 -----GVLYGMS------------------------------AHRLSNELGISYVEAAGF 787

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + +   +  +      + +  E     G                             GR
Sbjct: 788 IETYFNTYPGIRGY---IDRTLEFGRTQGYVETMY-----------------------GR 821

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622
                ++               R            +Q  + DI+   M+   +     G 
Sbjct: 822 RRYVPELAATN---RNVREAGERLAYNMP------IQGTAADIIKHAMIRLDRELEALGG 872

Query: 623 DIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E P+    + + L   +M         +PL  E      +
Sbjct: 873 RLLLQVHDELLIEAPENRAEDVARLTREVMEGAAK--LSVPLAVEVGTGPNW 922


>gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950]
          Length = 908

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 101/673 (15%), Positives = 195/673 (28%), Gaps = 146/673 (21%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKAC 83
           A D      A    D      D        +  L   L +       H +      L   
Sbjct: 353 AYDADATALAIVSADGEGRYIDTATLDPEDEAALASWLADPGPPKALHEAK-----LAMH 407

Query: 84  FNLDIPIHRWI------CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARF 133
              D+    W        T + A          +L  +    L+   +     ++ ++  
Sbjct: 408 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRAENPEQQQLSLL 464

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
              +  +    +       A     +    D  + R     L         +  +   + 
Sbjct: 465 DDTDGTDDQAVQTLLLRAVAVLDLAD--ALDEELARINSTSLLSGME--LPVQRVLAGME 520

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
           + G  VD+ L   L            +   ++    + +    ++L+  LF E  +    
Sbjct: 521 NAGIAVDLELLTELQSDFAHLIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELEMPKTK 579

Query: 254 LTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            T+T   T    L S       P    +  +R  A+R  V  ++ L+ ++ SDGR+  T 
Sbjct: 580 RTKTGYTTDADALQSLFDKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVASDGRIHTTF 637

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  + +                            +R   
Sbjct: 638 NQTIAA-TGRLSSTEPNLQNIPIRTEAGRR-------------------------IRDAF 671

Query: 369 IASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  +G  +L+ AD + IE R++A ++ ++  ++AF TGEDL+    +R+F V   +VT +
Sbjct: 672 VVGDGYSELMTADYSQIEMRIMAHLSKDEGLIEAFNTGEDLHSFVASRAFGVPIEEVTAE 731

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K M   L                GL+    +  +K                    
Sbjct: 732 LRRRVKAMSYGL--------------AYGLSAYGLSAQLKI------------------- 758

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                           +   + +  +   V +    + +   +                 
Sbjct: 759 -----------STEEAKDQMEQYFARFGGVRDYLMAVVEQARK----------------- 790

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                    +       GR     ++ ++            R            +Q  + 
Sbjct: 791 ---------DGYTSTVFGRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAA 832

Query: 608 DILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKG 660
           DI+   M+   KA         I+L VHDE++ E    +      L    M     +   
Sbjct: 833 DIIKVAMIETDKAIKDAGLSSRILLQVHDELLFEVAAGEREQLEALARDKMGGA--YPLD 890

Query: 661 LPLKAEGYESKRY 673
           +PL+      + +
Sbjct: 891 VPLEVSVGYGRSW 903


>gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus]
 gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus]
          Length = 943

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 99/680 (14%), Positives = 203/680 (29%), Gaps = 147/680 (21%)

Query: 28  VCVILFAFGFDD---HPVELWDCVHDPVMPQV---------------LKEALENTDVTIV 69
             ++       +   +        ++  +P                 L+  LEN  V  +
Sbjct: 373 ANILGLCLSLYNIYINQYIYIPISNNIQIPNQYNNKNYLSLKNVLLNLQPILENPAVVKI 432

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
             N  F  ++LK   N+++   +    ++        +  + +   L     K      L
Sbjct: 433 GQNMKFNYSLLKRH-NINLS-GKIFDVILEFYILYGTTNYQNIKRFLN----KETFNSIL 486

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---------- 179
             +      +  +    K  ++E+      Y    +    ++ + L P            
Sbjct: 487 NFQQSYDNYNNYIVKEIKNIYQESL-----YAIQLILAIFDLHQILWPQLYSNDKLKKIF 541

Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  L  +   I   G  +D  L  + +  ++V    L  +   L      +   +++
Sbjct: 542 QEIEIPLISILAHIESYGVLIDKTLLCSYSMELNVHLNTLQNQAYQLAGTS-FNLDSIKQ 600

Query: 239 LKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           L+  L+ +  L +   T +    T + VL       P    +   R   S+      N L
Sbjct: 601 LQEILYKKQKLPILKKTPSGSPSTNEEVLKKLSHKYPIPKIILKYR-SLSKLKSTYTNKL 659

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           +  +N++     T      + TGR S      QN+P  +    +                
Sbjct: 660 ISMVNTESNRIHTSYNQTRTATGRLSSANPNLQNIPNRNHDGRK---------------- 703

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   IA     +V AD + IE R++A ++ +   +  F +G+D++ TT +
Sbjct: 704 ---------IRQAFIAPSHSVIVSADYSQIELRIMAHLSRDFKLINDFLSGKDIHTTTAS 754

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F  +   VT +QR   K +   L Y   A        +  L++  +      +   + 
Sbjct: 755 EIFVTSLNLVTNEQRHQAKTINFGLIYGMSA-----FGLSKQLSVTCYEAQKYVDRYFQR 809

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           +     + + +++N  ++       G             +S+         +A       
Sbjct: 810 YPGVMQYIQHIKDNVYKYGYVSTLEGRKLYLP-----NIYSKNLSKKKGAERAAINAPMQ 864

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G A    K+  + + Y  K  +                                      
Sbjct: 865 GSAADIIKKAMISINYWLKQDDI------------------------------------- 887

Query: 595 GKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTS 653
                  VQ          M+          + VHDE+V E  +     A   +  LM  
Sbjct: 888 ------PVQ----------MI----------MQVHDELVFEVQNNFIDTAIKQIKKLMEE 921

Query: 654 NPSWAKGLPLKAEGYESKRY 673
              +   +PLK +    K +
Sbjct: 922 C--FILDVPLKVDIGVGKNW 939


>gi|311068878|ref|YP_003973801.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
 gi|310869395|gb|ADP32870.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942]
          Length = 787

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 98/720 (13%), Positives = 201/720 (27%), Gaps = 150/720 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPV------- 52
            + +D ET         G+  +      +  +  F+   V         H          
Sbjct: 148 EVALDTETT--------GVEWWD---RTVGLSLTFEFGDVEENFYIPYGHTSDHEQLTRG 196

Query: 53  -MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
            + + LK  LE     +V HNS F+  +L     + I  + +  T++            L
Sbjct: 197 YVMKKLKPHLEKKGTKLVLHNSKFDSHMLLK-DGITIRNNIYFDTMIAHSVLNENDEKGL 255

Query: 110 KAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
           KA+            K     EL +                    E+  L   Y   D  
Sbjct: 256 KAIATKYGRFFGFEDKSMSFGELFS-----------NKPEAFYSNESMELCTFYACKDTH 304

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVER 215
           +  +++K    +  K+ +L+ +                  G+ +D + A      +  E 
Sbjct: 305 LCLKLYKWQLSMMKKQPKLYDVYFNYEQPLTPAVLAMEETGFEIDFSFADMYKTELQAEV 364

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
           + L+Q++         +     +L   L+ E  L           + L    K       
Sbjct: 365 SDLEQKMTRRFG--EINLNSPAQLSALLYDELKLPDISGKRKADAKTLQKLVKHESDLKL 422

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           +   R   ++     +  L E +N + G+L  +     A+ T R++      QNLP  + 
Sbjct: 423 ILEYR-DLNKLLTTYVEPLPEKVNKNTGKLHSSFNQS-ATVTSRFASKDPNLQNLPPKA- 479

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                         R  ++A +G  +   D + IE R LA M+G
Sbjct: 480 ------------------------------RKLIVAPKGYLIFGIDYSQIEPRTLAHMSG 509

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +      +    DLY +  ++ F +                             +    T
Sbjct: 510 DAGLQYPYLNNIDLYASLASKIFKLPYEAC-----------------------LEADGET 546

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                            P +               P  A          ++    +   +
Sbjct: 547 Y--------KKAGLPKHPRKMMKVGLLAVMYGITVPSLAESLGISVPEAQKFMDDFYSSY 598

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDV---PLVYMKKDKNNLILMLPSGRSLVYR 571
             ++    +     ++T       +  ++R      ++       +  ++   GR     
Sbjct: 599 PEMTAWMAKQVAHADET--GYVETMQGRKRRFIGHTVIAKHYHALHAKVVNILGRE--PE 654

Query: 572 DVGNNRSYLNTTTRQLTREYTY---GGKLTENIVQAVSRDILAEGMMNATK------AGY 622
           ++       N   +       Y          I+Q  +  +L + M+          AG+
Sbjct: 655 NIWREPLPRNLKKQYWEVNKDYQRVARMSVNAIIQGSAALMLKKAMIAVNAHLERKGAGW 714

Query: 623 DIVLTVHDEIVCETPDT--------DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            ++ T+HDE++   P+          E     +             +PLK +     R+ 
Sbjct: 715 KMMATIHDELLFLIPEAVTPEEIIEIENIMKDVVK---------LDVPLKVDTEVMIRWG 765


>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
 gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
          Length = 1613

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 112/703 (15%), Positives = 205/703 (29%), Gaps = 180/703 (25%)

Query: 2    ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMPQ--VL 57
                +D ET             + ED  + L      D P  + D    P   + +   L
Sbjct: 1057 KLCTLDIETTGLN---------HRED-RIRLLQISTPDQPSVVIDVFKVPVPTLKECTWL 1106

Query: 58   KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-----ALKAV 112
             + L +  V  V HN  F+   L      ++       T++ A+            L  V
Sbjct: 1107 VKLLGSQAV-KVLHNGKFDINFLS-HNGFNVK-GPIFDTMIAAKLLSATRFNWSCKLGHV 1163

Query: 113  GE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
             E  L +   K ++  +                         +     Y   D  V   +
Sbjct: 1164 AERYLNIVLDKSQQFSDW-------------------TLDPLFEEQVIYASRDTAVLLPL 1204

Query: 172  FKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            +  L+              E +       +   G  VD+    +L   +D E     + L
Sbjct: 1205 YFILQEKLKAERLDMIADIENKCVLAVCQMEQNGIKVDLDKLKSLQAALDKENETAMKHL 1264

Query: 223  ESLTY---GLVSSSRCLEKLKTWLFLETGLHLEDLT--ETTCQRVLSSNKKLTPQAIQVF 277
                        +     ++   L  +  +        + T +R LS  +     AIQ  
Sbjct: 1265 GDTLGVSSNPNFNYNSQRQILQALQQQKVMDKTRRGLIQDTSERTLS--RNTYHPAIQAL 1322

Query: 278  NNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                + +++       +   ++S  GR+   +  +GA   GR+S      Q +PR S   
Sbjct: 1323 REYRKTNKAVTAFTEKIPNHIDSATGRIYPNINQIGAES-GRFSCDNPNLQQIPRDS--- 1378

Query: 337  EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                        R C IA +G KLV+AD + IE R+ A +A ++
Sbjct: 1379 --------------------------RFRECFIADKGNKLVIADFSQIELRIAADIAEDR 1412

Query: 397  WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              ++A+ +GEDL+  T +   N   ++VTK++R + K +   L +      F+  A    
Sbjct: 1413 RMIEAYNSGEDLHSLTASLVKNKPISEVTKEERQLAKAVNFGLIFGMSLAGFRNYA---- 1468

Query: 457  LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                              E     +    A   +  ++ + +S 
Sbjct: 1469 ----------------------------------ESCYGVVLSVPAAREIYDSFFKSYSG 1494

Query: 517  VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            ++     +  A         ++     R                                
Sbjct: 1495 ITAWHERMKAA------KPISVRTLSNRLSVFDQFSFT---------------------- 1526

Query: 577  RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEI 632
                               +     VQ  S DI  E M             ++L +HDEI
Sbjct: 1527 -------------------RSLNYPVQGTSADITKEAMALLVDRVADISGKMILCIHDEI 1567

Query: 633  VCETPDT-DEFNASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673
            + E P++       +L   M +    + + +P KA G     +
Sbjct: 1568 ILEVPESNANKALEVLIETMETAGNKFLRYVPCKAMGSIGDSW 1610


>gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
 gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506]
          Length = 597

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 119/706 (16%), Positives = 212/706 (30%), Gaps = 174/706 (24%)

Query: 1   MA--TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVL 57
           M    + ID ET     LT+           + L       HPV + D           L
Sbjct: 32  MKARVIGIDTETTGLDPLTE----------RIRLIQIAAPQHPVIIVDLAALADSELSPL 81

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K  L N+    V  N  F+  VL+    L  P   +   ++ ++            ++L 
Sbjct: 82  KALL-NSSALKVFQNGKFDWQVLEMA-GLR-PSGPFFDVMLASQVLRSGLKKDHDLQSLT 138

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                ++  K L               ++     +      EY   D  V  ++  RL  
Sbjct: 139 FEFLGIKLDKSL---------------QSSNFAGKLSASQLEYAALDAAVLLKLRARLHS 183

Query: 178 LS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL--- 225
                        E         +   G  +DV   H + + +  ++     EL      
Sbjct: 184 KLRSAGLLETAKIEFAAMPAVAQMELNGMLLDVEQWHLVGEELKAQKQATLVELVKAGLK 243

Query: 226 -----------TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
                            + R   ++ + L     + +    ++T +  L    +  P   
Sbjct: 244 PAPSAQLSLFPDMVETINPRSSVQVLSAL-QALNIPI----KSTSKSELIPIARQYPVIQ 298

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            + N R + +         L + ++   GR+  + +  GA R+GR+S      QN+PR  
Sbjct: 299 LLLNYR-KLASLCSNFAEALPKHIHQITGRIHPSYRQCGA-RSGRFSCKQPNLQNVPRN- 355

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R+C IA  G +++ AD + IE R++A ++
Sbjct: 356 -------------------------CTVKGMRACFIAPPGYQIIKADYSQIELRIVAEIS 390

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G+   L A+  GEDL+  T +        +VT + R I K +   L Y  GA   Q  A 
Sbjct: 391 GDAKMLDAYVKGEDLHTLTASLITGKLLEEVTTEDRRIAKSVNFGLIYGMGAAKLQAYA- 449

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                                                E   + L      +  +K + Q 
Sbjct: 450 -------------------------------------EEKYDVLLTLEEAKEFRKRFFQA 472

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +S V    + + +                                            +D+
Sbjct: 473 YSGVKRWHDSIRRTV----------------------------------------YVKDI 492

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVH 629
              R+      R   +      +L  + VQ  S D+L   +    K     G  ++  VH
Sbjct: 493 KQIRTIGGRRRRWAKKPRL--SELLNHPVQGTSADMLKVAIARLFKLLPKTGAKLIAVVH 550

Query: 630 DEIVCETPDTDEFNAS-MLYHLMTSNPSWAK-GLPLKAEGYESKRY 673
           DEI+ E P T     S +L  +M          +P++ E   +  +
Sbjct: 551 DEILLECPQTTLKRTSCILKKVMVEAGELYLQQVPVEVEVKIASSW 596


>gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1]
 gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1]
          Length = 765

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 106/746 (14%), Positives = 218/746 (29%), Gaps = 147/746 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEALENT 64
           +D ET                D  +                  H   M    LK+ L   
Sbjct: 81  LDTETTGLN----------VVDDKIAGVNLYTPGEKGIYVPLNHVSYMTGAKLKDQLPLD 130

Query: 65  DVTI-VAH---------NSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAV 112
            V   +           N++F+  VL     ++  I  +  T + A       P  LK +
Sbjct: 131 VVKKYIMQLENTKLDFSNAHFDLQVLYWQMGIN-NIKAYWDTQLAANLLNENEPHGLKYL 189

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
               K   ++    K+L               R  P  +    +   Y   D  ++ E+ 
Sbjct: 190 --YEKYVKKEDTNSKQLATF--------GTLFRGIPFTKIPLDIAYLYAGKDPKMSYELA 239

Query: 173 KRLEPLSS---------KEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVD 212
           +      +            +++ +   I              G  +D+ L   L+    
Sbjct: 240 EFQRKYLNNTDADVVKRHLDDVYRVMIDIEMPTVPAVLDMEIKGIKLDLDLNKKLSAKYR 299

Query: 213 VERTKLDQELESLT-----YGLVS---------------SSRCLEKLKTWLFLETGLHLE 252
            ++ +++++L+                            +    ++L  + +   GL   
Sbjct: 300 QKKAEVEEKLKIEFNKYDKEFKEFKIKHPDLASRLSNPINISSPKQLGIFFYDMLGLKPV 359

Query: 253 DLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQ 309
           D  +   T   +L       P A  +   R    +     ++ L   ++   G++  T  
Sbjct: 360 DREKPRGTGADILGKF--DVPVAKLILEYR-ELDKLLGTYIDKLPTVLSKRTGKIHCTFN 416

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
             G + TGR+S      QN+P  ++                             +R   I
Sbjct: 417 QYG-TVTGRFSSDSPNLQNIPSHNKD----------------------------IRKMFI 447

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV----- 424
             +G  L+  D +  E R LA M+G++  +KA++ G+D+Y T  +  + V   +      
Sbjct: 448 PDDGNILIGGDYSQQEPRSLAHMSGDEKMIKAYKNGKDIYATIASYVYKVPYEECLEFNP 507

Query: 425 -------TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
                   K +R+  K + L + Y  G  +  +      LNL         +     +  
Sbjct: 508 DGTTNTIGKQRRSNLKGVVLGIIYGRGVNSIAE-----KLNLTKKEAQSIIDEFFTLFPK 562

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
            + F         E        G          R++   ++    E     + T +N   
Sbjct: 563 VKQFTEDSIRMARELGYVTTLSGR---------RRRLPDINLPRYEFKYKDKSTSDNFNP 613

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGR---SLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                         +  + +   ML   R         +   R+   +            
Sbjct: 614 FFDTADDVENDEVPEYVQLSYTAMLEKSRFDKKRKNVILSKARTEGISIKNNTGLIAQAE 673

Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
            +   + +Q  + D+    M+         + GY +++ VHDEI+ + P         + 
Sbjct: 674 RQCVNSRIQGSAADMTKIAMIALHNNKRLKELGYCMLIQVHDEIIGQCPIDVVKEVKPIL 733

Query: 649 H-LMTSNPSWAKGLPLKAEGYESKRY 673
              M +       +P+  +   +K +
Sbjct: 734 ESCMLNAVKLV--VPMSVDIDITKCW 757


>gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae]
          Length = 877

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 186/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDQ----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L                                  
Sbjct: 706 AKAVNFGVVY-----GISDFGLSNNLG--------------------------------- 727

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 728 ------ISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +    +                   + +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNFNIRGFAEA---------TAINSPIQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1]
 gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu]
 gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 866

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 106/660 (16%), Positives = 204/660 (30%), Gaps = 138/660 (20%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            +   A     + V   +      +  +LK+   +       + S  +   L     +D+
Sbjct: 327 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 383

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            +      LVLA        L + G  +   +  ME G    A F   E           
Sbjct: 384 HVTA--D-LVLA------EHLVSGGAKISFQTLLMESGHIQEAVFFSKEWGAGSLPVQSL 434

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
                 + FG +    + +   +F +LE         + EQ L  +   +   G  +D  
Sbjct: 435 PRD-PAQYFGMFASKLLAIKNYLFVKLEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQ 493

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
               L++ +  E  +  QE+  LT     + +  ++L   L+   G+   D  ++T   V
Sbjct: 494 GLAVLDRDLTKELEECSQEIYDLTGC-EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEV 552

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321
           L + +       ++   R    +     +  L + +N+   R+  T   +G + TGR S 
Sbjct: 553 LEALEDRHEIIPKILMFR-ATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRLSC 610

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380
                QN+P  S                              +R      +     + AD
Sbjct: 611 QDPNLQNIPVRSERGR-------------------------SLREAFRVKKDNDYFLAAD 645

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R LA ++ ++   +AF +GED++  T ++ FNV   QVTK +R   K +     
Sbjct: 646 YSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQERYQAKAVN---- 701

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G                              +     +       
Sbjct: 702 ----------FGLVYG------------------------------QQAYGLSKILKISV 721

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
           +  + +  A+  ++   +E    + Q  EQ  +N K                        
Sbjct: 722 SEAQGLMDAYFARYPLAAEF---ITQTIEQASKNQKVTTML------------------- 759

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
               GR  +  D  ++                 G       +Q  + +++   M+N +  
Sbjct: 760 ----GRERILSDWESSPGAR----------AASGRLAVNTRIQGSAAELIKLAMLNISDE 805

Query: 621 ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                    ++L +HDE++ E P  +     S++   M S       +PL       K +
Sbjct: 806 MRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 863


>gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71]
 gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141]
          Length = 877

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 187/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLVVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   +                G++    ++                           
Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 725 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3]
          Length = 829

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 84/593 (14%), Positives = 166/593 (27%), Gaps = 149/593 (25%)

Query: 94  ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
             T + A          +L  +     +      + K  I      +   C         
Sbjct: 369 FDTTLAAYLADPDSNDYSLSRLCAQYGVPEGNSIQEKS-ITVAALNDILNCKISETGSAA 427

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                        D+ +                    +   +   G  +D        + 
Sbjct: 428 VLT----------DIEIPLA----------------TVLVAMEREGVSIDADGIKAFGKE 461

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
           V  +  K+ +E+         +    ++L + LF +  L     T+   +T   VL S  
Sbjct: 462 VCEKAEKISREIYEYAGY-EFNIGSPKQLGSVLFEKLALPSAKKTKTGYSTNADVLESLM 520

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P    +   R   ++     +  L++ +  DGR+  T +    +RTGR S      Q
Sbjct: 521 DKHPIVPLITEYR-ALTKLQNTYVTGLLKVVGEDGRIHSTFKQ-TETRTGRISSAEPNIQ 578

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    E                         +R    A +G  LV AD + IE R
Sbjct: 579 NIPVRTPLGRE-------------------------MRRFFTAKDGYLLVDADYSQIELR 613

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA ++G++   KAF  G D++  T ++ FN     VT D R+  K +            
Sbjct: 614 VLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNF---------- 663

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G+   + +  +                                         
Sbjct: 664 ----GIVYGIGAFSLSKDI------------------------------GVSVPKASEYI 689

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           +++  K+S ++    +     ++                          +  +    GR 
Sbjct: 690 RSYLSKYSGIAHYMEQTVAKAKR--------------------------DGYVETMFGRR 723

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
              +++               R            +Q  + DI+   M+            
Sbjct: 724 RYIKELAAKN---KNLQAFGERVA------KNTPIQGTAADIIKIAMIKVYNRLEESGLD 774

Query: 622 YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E  +      + +L   M +       +P+  +    K +
Sbjct: 775 ARLILQVHDELIVEAKEDCAEKVALLLKEEMENAVK--LTVPMTVDVNIGKTW 825


>gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
 gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA]
          Length = 420

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 76/506 (15%), Positives = 143/506 (28%), Gaps = 119/506 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E         +  RG  VD          +     +L + +         +    +
Sbjct: 20  YEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYKEAG-EEFNINSPK 78

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
           +L   LF    L     T+   +T   VL   + L P    +   R   ++      + L
Sbjct: 79  QLGVVLFEHMKLEGGKKTKTGYSTSVDVLEKIEHLYPIISYILEYRQ-LTKLKSTYADGL 137

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
              +  D R+ G       + TGR S      QN+P                        
Sbjct: 138 ANYIGDDERIHGKFNQ-TITATGRISSTEPNLQNIPARVELGRA---------------- 180

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   +  EG   V AD + IE RVLA ++ ++  + A+E  +D++  T +
Sbjct: 181 ---------IRKVFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQDIHARTAS 231

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F V   QV+  QR   K +                    GL+                
Sbjct: 232 EVFGVPIDQVSSIQRRDAKAVNF--------------GIVYGLS---------------- 261

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                             + +        +     + + + +V +    L++  E+  E 
Sbjct: 262 --------------AFGLSQDLKITRKQAQEYIDKYFETYPKVKKY---LNREVEKGKEE 304

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G      +                       R     ++ ++            R     
Sbjct: 305 GFVTTMFQ-----------------------RIRPIPELKSSNFMQRN---FGERVAMNS 338

Query: 595 GKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNAS-ML 647
                  +Q  + DI+   M+         K    ++L +HDE++ E  D++      +L
Sbjct: 339 P------IQGSAADIIKIAMIRVNMELKKRKLKSRLILQIHDELLIEAHDSEVEEVKGIL 392

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673
              M S       +PL  + +    +
Sbjct: 393 TREMMSAAK--LSVPLSIDIHTGNSW 416


>gi|329767425|ref|ZP_08258950.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
 gi|328836114|gb|EGF85805.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341]
          Length = 879

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 88/688 (12%), Positives = 197/688 (28%), Gaps = 149/688 (21%)

Query: 6   IDFETRSPIDLTKCGICKYAED---VCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEA 60
           IDF T S        +  Y ED     V+     + +    ++    +      + + E 
Sbjct: 317 IDF-TDSA-----LHVECYTEDYHNSDVVGI-VVYREGDAYIF---SEEQFFTNEFVVEY 366

Query: 61  LENTDVTIVAHNSYFE---RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           L++  V  V     ++      +     ++I         +++    + +  +       
Sbjct: 367 LQSEFVKTV-----YDFKKILFIAKRNGVNIN-GEVFDVKIVSYLIDVNAKTEIDKIVFN 420

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              + ++  +E+  +  K                 E+  L     +             +
Sbjct: 421 YLGKIIKSDEEIYGKGAKRTLPSQDVINPYIAEVAESIALMKPLMEEK----LAEENMTD 476

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E ++  +   +   G  V       ++   D     L+  + +L      +    
Sbjct: 477 LYKDIEIKVAKVLANMEFEGIHVSKKALEEMSAEFDERIKTLESSIYTLAGS-EFNIASP 535

Query: 237 EKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           ++L   LF + GL     T+   +T   VL   +        +   R   ++        
Sbjct: 536 KQLGVVLFEDLGLPPIKKTKTGYSTAVEVLEQLQHSHEIIPLIMEYR-TITKLNSTYAKG 594

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           LV+ +  +G++    +   A +TGR S      QN+P      ++               
Sbjct: 595 LVKDITREGKIHTRYEQTLA-QTGRLSSVNPNLQNIPTRIEEGKK--------------- 638

Query: 354 PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R   +  SE + ++  D + IE RVLA +A ++  + AF+   D++  T
Sbjct: 639 ----------IRKAFVPASEDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKT 688

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +    V+  QVT   R   K +   +                G++    ++        
Sbjct: 689 ASDVNGVSLDQVTSSMRREAKAVNFGIV--------------YGISDFGLSN-------- 726

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                                          +     + +    V +   ++ +  ++  
Sbjct: 727 ----------------------NLGITRKRAKEFIDKYLETFKGVDKYMTDIVEFAKE-- 762

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                                   +  +     R     D+      +            
Sbjct: 763 ------------------------HGYVETLFNRRRALPDINAKNKIV---------ANL 789

Query: 593 YGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT-DEFNAS 645
                  + +Q  + DI+   M+N       TK    ++L VHDE++ +     +E    
Sbjct: 790 NARIAMNSPIQGTAADIIKIAMVNVFEYLEKTKVDAKLLLQVHDELIFDVNKDIEEDFTK 849

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +  +M         + LKAE      +
Sbjct: 850 EMIKIMEEAA--NLDVQLKAEASSGASW 875


>gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5]
 gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5]
          Length = 909

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 95/629 (15%), Positives = 176/629 (27%), Gaps = 129/629 (20%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEAL 116
            L + +   V H+S        A    ++       T + A           L  +    
Sbjct: 390 WLADAERPKVLHDSKPAVLAFAAH-GWELQGIA-RDTQIAAYLARPDQRSYDLTDLALRY 447

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +  +  E       G   E + ++N     +A          D  ++R+  +   
Sbjct: 448 LHRELR-VDAPETGQLTLDGLGDEGVAEQNL--MLQARATLDLADAIDAELSRDGEQSAR 504

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            ++  E  L  +  T+   G   D      L      E     Q    +      +    
Sbjct: 505 LMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEVVG-REFNLGSP 563

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L+  LF E GL      +T   T    L     +     +         ++     ++
Sbjct: 564 KQLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKST-VD 622

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L+++++ DGR+  T     A+ TGR S      QN+P  +                   
Sbjct: 623 GLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRTEEGRR-------------- 667

Query: 353 DPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                      +R   +  EG + L+ AD + IE R++A ++ +   ++AF +G D +  
Sbjct: 668 -----------IRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFHAA 716

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V    VT DQR   K M                    GL+    +        
Sbjct: 717 TASSVFTVEVGDVTADQRRKIKAMNYG--------------LAYGLSAFGLSQQ------ 756

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                             + + +      V +   E+     Q 
Sbjct: 757 ------------------------LGISAEEARGLMENYFAGFGGVRDYLQEVVARARQ- 791

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                    +       GR     D+ ++            R  
Sbjct: 792 -------------------------DGYTSTILGRRRYLPDLVSDN---RQRREMAERMA 823

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+   M++   A         ++L VHDE+V E    +     
Sbjct: 824 LNAP------IQGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERETLE 877

Query: 646 MLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
            L    M     +   +PL+    E   +
Sbjct: 878 ALVRKQMGEA--YPLSVPLEVSVGEGHDW 904


>gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
 gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702]
          Length = 829

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 84/593 (14%), Positives = 166/593 (27%), Gaps = 149/593 (25%)

Query: 94  ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
             T + A          +L  +     +      + K  I      +   C         
Sbjct: 369 FDTTLAAYLADPDSNDYSLSRLCAQYGVPEGNSIQEKS-ITVAALNDILNCKISETGSAA 427

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                        D+ +                    +   +   G  +D        + 
Sbjct: 428 VLT----------DIEIPLA----------------TVLVAMEREGVSIDADGIKAFGKE 461

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK 267
           V  +  K+ +E+         +    ++L + LF +  L     T+   +T   VL S  
Sbjct: 462 VCEKAEKISREIYEYAGY-EFNIGSPKQLGSVLFEKLALPSAKKTKTGYSTNADVLESLM 520

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P    +   R   ++     +  L++ +  DGR+  T +    +RTGR S      Q
Sbjct: 521 DKHPIVPLITEYR-ALTKLQNTYVTGLLKVVGEDGRIHSTFKQ-TETRTGRISSAEPNIQ 578

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  +    E                         +R    A +G  LV AD + IE R
Sbjct: 579 NIPVRTPLGRE-------------------------MRRFFTAKDGCLLVDADYSQIELR 613

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA ++G++   KAF  G D++  T ++ FN     VT D R+  K +            
Sbjct: 614 VLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNF---------- 663

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G+   + +  +                                         
Sbjct: 664 ----GIVYGIGAFSLSKDI------------------------------GVSVPKASEYI 689

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           +++  K+S ++    +     ++                          +  +    GR 
Sbjct: 690 RSYLSKYSGIAHYMEQTVAKAKR--------------------------DGYVETMFGRR 723

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
              +++               R            +Q  + DI+   M+            
Sbjct: 724 RYIKELAAKN---KNLQAFGERVA------KNTPIQGTAADIIKIAMIKVYNRLKESGLD 774

Query: 622 YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E  +      + +L   M +       +P+  +    K +
Sbjct: 775 ARLILQVHDELIVEAKEDCAEKVALLLKEEMENAVK--LTVPMTVDVNIGKTW 825


>gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
 gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel]
          Length = 875

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 90/632 (14%), Positives = 185/632 (29%), Gaps = 146/632 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++   L +  +  + ++      +LK   N    I       ++  +     + K + E
Sbjct: 375 DIISNLLTDKSIKKITYSLK---PLLKFYANQSHAITAIEDLELIQYALSAGLSQKNLFE 431

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                +QK    + +I    K   +     + K    +  + F  Y   D          
Sbjct: 432 ----EAQKETVIENIINESAKIVINFISLYKQKILELKDNKAFRLYSNID---------- 477

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                     + ++   +   G  VD      L+     E  +L++E+ +L+     +  
Sbjct: 478 --------LPICFILDKMEKVGIKVDANYLKQLSAEFGTEIARLEEEIFALSGTK-FNIG 528

Query: 235 CLEKLKTWLFLETGLHLED---LT--ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             ++L   LF +  L        T   +T   +L    K       +     + ++    
Sbjct: 529 APKQLGEILFEKMQLPFGKASAKTNSYSTGVEILKKLSKHGYNIADLLLRWRQLTKLKNT 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             ++L + +++  R   T     ++ TGR S      QN+P  S    +           
Sbjct: 589 YTDSLPKQIDNITRRVHTTFLQTSTTTGRISSQEPNLQNVPIRSSEGNK----------- 637

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R   I  +G KL+ AD + IE R+L+ +A      +AF   +D++
Sbjct: 638 --------------IRQAFIPEKGYKLISADYSQIELRILSHIANIDALKQAFTNKDDIH 683

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T  + FN+   ++T   R   K +                    G++    A      
Sbjct: 684 TQTACQIFNLPKDKLTSKHRRKAKAINF--------------GIIYGISAFGLAQQ---- 725

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                          +      K +  ++  V E   +      
Sbjct: 726 --------------------------LNVTNSEAAEYIKKYFAEYKGVQEYIEQTKAFV- 758

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                                     +N  +    GR      + N +       +   R
Sbjct: 759 -------------------------SSNGYVTNFFGRKCFLPSIHNKK-----LKQFAER 788

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+N        K    +VL +HDE++ E P  +   
Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKLKLKTRLVLQIHDELLFEAPTDEIEL 842

Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
              ++  +M +  S    +P+  E      + 
Sbjct: 843 VIPIIKKIMEN--STNMDVPIITEIRAGNNWM 872


>gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
 gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong]
          Length = 910

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 102/669 (15%), Positives = 198/669 (29%), Gaps = 155/669 (23%)

Query: 31  ILFAFGFDDHPVELWDCV---HDPVMPQV---------LKEALENTDVTIVAHNSYFERT 78
           I   F  D H +   D            +         + E L ++ +  + +N      
Sbjct: 365 ISITFSLDLHKLYFIDLTAITSKEQNRAIATNPWWKSSIIELLLDSSIQKITYNLKELLI 424

Query: 79  VLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
            L      +I         +++                L L+       K    ++ + +
Sbjct: 425 FLLNFLRTEITSASCIDDIMLMHYILSAGKN------DLSLNEIIQTYNKSYSEQYSENK 478

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
                             LF               K L      +  + Y+ + I + G 
Sbjct: 479 VCWLKN----TFDNLMSELFKN-------------KLLHCYYEIDLPICYILRNIENNGI 521

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED---L 254
            ++V L   L+  +  +   L+Q++  +      +    ++L   LF    L        
Sbjct: 522 KINVPLLKELSAQLKHKIELLEQQIYKICGQ-EFNIASPKQLGEILFDVLKLPHAKVSQK 580

Query: 255 TET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           T++  T   VL +  +   +   +     + ++     ++TL   +N++     T     
Sbjct: 581 TKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRIHTTLLQT 640

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
           ++ T R S      QN+P  S    +                         VRS  +A +
Sbjct: 641 STTTSRLSSHSPNLQNIPIRSEYGLK-------------------------VRSAFVAPQ 675

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G K++ AD + IE R+L++ A  +     F  GED++ +T A+ F +   QVT++ R   
Sbjct: 676 GSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEEHRRKA 735

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G++                                  
Sbjct: 736 KAINF--------------GVIYGIS------------------------------AFGV 751

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           A +     T   +    + Q++  + +  +E  +   +                      
Sbjct: 752 AKQLNISNTEAAQYINHYFQEYPSIRQYMDETKKFAVE---------------------- 789

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
               N  +    GR      + ++     TT     R            +Q+ + DI   
Sbjct: 790 ----NGYVKNMIGRRCYIPLINSSNL---TTRNFAQRAAINAP------IQSTASDIAKI 836

Query: 613 GMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKA 665
            M+   K  Y       ++L VHDE+V E P+     A  L    M + P +    PLK 
Sbjct: 837 AMIQYEKLIYSKYPAIKLLLQVHDELVFELPNELVDTACNLIKCTMENIPYF--SFPLKV 894

Query: 666 EGYESKRYR 674
           E      + 
Sbjct: 895 ELKIGDNWG 903


>gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
 gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247]
          Length = 949

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/671 (15%), Positives = 194/671 (28%), Gaps = 119/671 (17%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
             A    D      D        +  L + L +  +    H   +    L       +  
Sbjct: 364 GLAIAAADGTSAYVDVTAVDADDEQALADWLADPAMGKALHEVKWGIHAL-RSRGWTLA- 421

Query: 91  HRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                T + A           L  +         + ++G             +    +  
Sbjct: 422 GVTSDTSLAAYIVRPGQRTFNLDDLALRYLRRELRADDGSGDGQLSLL--DDDGGAAKLA 479

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
             H    R   E     +    +    L  L+  E  L ++   +   G  VDV     L
Sbjct: 480 EQHMLEARAVVELA-EVLDTELDRIDSLPLLTEMELPLAFVLADLEAAGIAVDVDHFGEL 538

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLS 264
            +               +    + +    ++L+T LF +  +     T+T        L 
Sbjct: 539 EKNFAQRIRVAANAAYDVIGEQI-NLGSPKQLQTVLFDKLDMPKTKKTKTGYTTDADALQ 597

Query: 265 SNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           +  +    P    +  +R  A+R  V  ++ L++++  DGR+  T     A+ TGR S  
Sbjct: 598 ALYEKTEHPFLAHLLEHR-DATRLKVT-VDGLLKSVADDGRIHTTFNQTIAA-TGRLSST 654

Query: 323 VFPPQNLPRPSRSHEELDQII------------THLPTSITSDPDPLQIISDCVRSCVIA 370
               QN+P  + +  E+ Q                   S  S PD +   S         
Sbjct: 655 EPNLQNIPVRTAAGREIRQGFIVGAGSGASGDGGVGAGSGASGPDGVGAGSGSSGHDGGT 714

Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            +G   L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F V   +VT + R
Sbjct: 715 GDGFDCLMTADYSQIEMRIMAHLSEDAGLIEAFNTGEDLHNFVGSRAFGVPIDEVTTEMR 774

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K M   L Y                                                
Sbjct: 775 HRVKAMSYGLAYG-----LSAFGL------------------------------------ 793

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +        +    A+  +   V +  +++     +                   
Sbjct: 794 ---AAQLKISRDEAKEQMDAYFARFGGVRDYLHDVVAEARR------------------- 831

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                  N       GR     D+ ++      +     R            +Q  + DI
Sbjct: 832 -------NEYTATLFGRRRYLPDLNSDNWQRRQS---AERMALNAP------IQGTAADI 875

Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           +   M+N  K          ++L VHDE+V E    +      +    M +  +    +P
Sbjct: 876 IKVAMINVHKRLQSEELRSRMLLQVHDELVVEVATGERDAVEAVVREEMGAAIT--LSVP 933

Query: 663 LKAEGYESKRY 673
           L+      + +
Sbjct: 934 LEVSVGFGRSW 944


>gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 362

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 130/356 (36%), Positives = 195/356 (54%), Gaps = 8/356 (2%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L+ D ET   I +   G   YAE V V+LFA+   D PV +WD      +P  L++A+ 
Sbjct: 5   ILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPSRLRKAIA 63

Query: 63  NTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           + D  +  HNS+F+RTVL+     L  P+ RW  T+V A ++ LP AL A+ E L +   
Sbjct: 64  DPDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQALAHSLPGALAALCEVLGVPQD 123

Query: 122 --KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             K +EGK LI  FCK         R     H   W+ F  Y   D+   RE++KRL   
Sbjct: 124 KAKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREVYKRLPKW 183

Query: 179 SSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           + +  E  LW+ DQ INDRG+CVD+ L H   + VD  + +L ++   +T G V ++   
Sbjct: 184 NYQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGEVQAATQR 243

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           + +   +    G+ L D+ ++T +R ++    L P   ++ + R++AS ++  K  TL++
Sbjct: 244 DAMIKHIVESYGVELPDMQKSTIERRIAD-PDLPPAVKELLHIRLQASATSTSKYKTLLK 302

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           +++SDGRLRGTLQF GASRTGRW+G +F PQNL R S S EE++  I  +      
Sbjct: 303 SVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRESLSREEIEFGIECMKADCED 358


>gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70]
 gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s]
 gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923]
 gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2]
 gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150]
 gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023]
          Length = 866

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/660 (16%), Positives = 203/660 (30%), Gaps = 138/660 (20%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            +   A     + V   +      +  +LK+   +       + S  +   L     +D+
Sbjct: 327 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 383

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            +      LVLA        L + G  +   +  ME G    A F   E           
Sbjct: 384 HVTA--D-LVLA------EHLVSGGAKISFQTLLMESGHIQEAVFFSKEWGAGSLPVQSL 434

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
                 + FG +    + +   +F +LE         + EQ L  +   +   G  +D  
Sbjct: 435 PRD-PSQYFGMFASKLLAIKNYLFVKLEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQ 493

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
               L++ +  E  +  QE+  L      + +  ++L   L+   G+   D  ++T   V
Sbjct: 494 GLAVLDRDLTKELEECSQEIYDLVGC-EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEV 552

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321
           L + +       ++   R    +     +  L + +N+   R+  T   +G + TGR S 
Sbjct: 553 LEALEDRHEIIPKILMFR-ATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRLSC 610

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380
                QN+P  S                              +R      +     + AD
Sbjct: 611 QDPNLQNIPVRSERGR-------------------------SLREAFRVKKDNDYFLAAD 645

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R LA ++ ++   +AF +GED++  T ++ FNV   QVTK QR   K +     
Sbjct: 646 YSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVN---- 701

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G                              +     +       
Sbjct: 702 ----------FGLVYG------------------------------QQAYGLSKILKISV 721

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
           +  + +  A+  ++   +E    + Q  EQ  +N K                        
Sbjct: 722 SEAQGLMDAYFARYPLAAEF---ITQTIEQASKNQKVTTML------------------- 759

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
               GR  +  D  ++                 G       +Q  + +++   M+N +  
Sbjct: 760 ----GRERILSDWESSPGAR----------AASGRLAVNTRIQGSAAELIKLAMLNISDE 805

Query: 621 ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                    ++L +HDE++ E P  +     S++   M S       +PL       K +
Sbjct: 806 MRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 863


>gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
 gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174]
          Length = 811

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/670 (13%), Positives = 178/670 (26%), Gaps = 134/670 (20%)

Query: 20  GICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKEALENTDVTIVAHNSYFE 76
           G+   ++   V           +             +   LKE   ++ +         +
Sbjct: 256 GVALLSDKEGVYGLGIALTKGEIYYVPVEGLLTGDYICAALKEI-ADSTILC-----SID 309

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARF 133
              +     L+        T V                +     L    +    +L+ + 
Sbjct: 310 VKSMLKHVGLE-DADHVFDTGVAVYLLNPLKSSYTFDDIAREY-LDGALLPTRTDLLGKD 367

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYC----KGDVTVTREIFKRLEPLSSKEQELWYLD 189
                 E   D            +  Y       +     E++         E  L +  
Sbjct: 368 SLKAAWEKSSDGLMSYACHL--AYTAYATREPIENALKETEMWNVYR---EIELPLIFTL 422

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
            ++   G  V      +  + + V   +L++ +         +    ++L   LF + G+
Sbjct: 423 DSMEKWGIRVKGEELKSYGEKLQVRIAELEKLIYEQAG-EEFNINSPKQLGVILFEKMGI 481

Query: 250 HLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+   +T   +L       P    +   R   ++      + L   + +DGR+  
Sbjct: 482 PGGRKTKTGYSTAADILEKLAPEQPIVNDILEYRQ-LTKLKSTYADGLSAVIEADGRIHS 540

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T      + TGR S      QN+P                                 +R 
Sbjct: 541 TFNQ-TITATGRISSTEPNLQNIPVRMELGR-------------------------LIRK 574

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
             +  +G   + AD + IE RVLA M+G++  ++A+   ED++  T ++ F+V   +VT 
Sbjct: 575 VFVPEDGYVFLDADYSQIELRVLAHMSGDEKLIQAYREAEDIHRLTASQVFHVPFDEVTD 634

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
            QR   K +   + Y            +  L++             E +   + F   + 
Sbjct: 635 LQRRNAKAVNFGIVYGIS-----SFGLSQDLSITRKEAAEYIEKYFETYPKIKGFLDGLV 689

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
            +  E                                                  +RR +
Sbjct: 690 ADGKEKGYVSTM-----------------------------------------LGRRRPI 708

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
           P +                           R  +N+  +               + Q   
Sbjct: 709 PELKSGNFMQRSF---------------GERVAMNSPIQ--GTAADIIKIAMNRVYQ--- 748

Query: 607 RDILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPL 663
                       + G    +VL VHDE++ ET   +    S +    M         + L
Sbjct: 749 ---------RLKEEGLQSRLVLQVHDELLIETKKEEVETVSRILEEEMKGAVH--LSVEL 797

Query: 664 KAEGYESKRY 673
             + +E   +
Sbjct: 798 DVDMHEGNSW 807


>gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276]
 gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s]
 gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX]
 gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13]
 gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT]
 gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768]
 gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222]
 gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074]
 gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301]
          Length = 866

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/660 (16%), Positives = 202/660 (30%), Gaps = 138/660 (20%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            +   A     + V   +      +  +LK+   +       + S  +   L     +D+
Sbjct: 327 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 383

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            +      LVLA        L + G  +   +  ME G    A F   E           
Sbjct: 384 HVTA--D-LVLA------EHLVSGGAKISFQTLLMESGHIQEAVFFSKEWGAGSLPVQSL 434

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
                 + FG      + +   +F +LE         + EQ L  +   +   G  +D  
Sbjct: 435 PRD-PLQYFGMLASKLLAIKNYLFVKLEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQ 493

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
               L++ +  E  +  QE+  L      + +  ++L   L+   G+   D  ++T   V
Sbjct: 494 GLAVLDRDLTKELEECSQEIYDLVGC-EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEV 552

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321
           L + +       ++   R    +     +  L + +N+   R+  T   +G + TGR S 
Sbjct: 553 LEALEDRHEIIPKILMFR-ATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRLSC 610

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380
                QN+P  S                              +R      +     + AD
Sbjct: 611 QDPNLQNIPVRSERGR-------------------------SLREAFRVKKDNDYFLAAD 645

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R LA ++ ++   +AF +GED++  T ++ FNV   QVTK QR   K +     
Sbjct: 646 YSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVN---- 701

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G                              +     +       
Sbjct: 702 ----------FGLVYG------------------------------QQAYGLSKILKISV 721

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
           +  + +  A+  ++   +E    + Q  EQ  +N K                        
Sbjct: 722 SEAQGLMDAYFARYPLAAEF---ITQTIEQASKNQKVTTML------------------- 759

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
               GR  +  D  ++                 G       +Q  + +++   M+N +  
Sbjct: 760 ----GRERILSDWESSPGAR----------AASGRLAVNTRIQGSAAELIKLAMLNISDE 805

Query: 621 ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                    ++L +HDE++ E P  +     S++   M S       +PL       K +
Sbjct: 806 MRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 863


>gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva]
          Length = 1786

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/712 (14%), Positives = 188/712 (26%), Gaps = 189/712 (26%)

Query: 2    ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-------VHDPVMP 54
              + +D ET      T            + L      + P  + D             + 
Sbjct: 1220 KAVGVDIETTGLDHNTN----------QIRLVQLSVPNQPSLIIDLFKLSTNNPDAESVV 1269

Query: 55   ---------QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
                     + LK+  ++ +   V HN  F+   L   +  +        T+V ++    
Sbjct: 1270 PGRNELIKCEWLKKLFKSKETVKVFHNGKFDINFL-RVYGFEFE-GPIFDTMVASKLLVA 1327

Query: 106  PS----ALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   L  V E  L +   K ++  +                       + +     Y
Sbjct: 1328 SRYISCKLTHVSERYLNIVLDKTQQYSDWSTL-------------------QLFEEQLLY 1368

Query: 161  CKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIV 211
               D  V   ++  LE L              +       +   G  VD      L   +
Sbjct: 1369 SARDSFVLLPLYVILEHLLKINNLSDIASVENKCILATSDMELNGIQVDEDKLKFLQDEL 1428

Query: 212  DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268
              E  ++   L S       +    +++   L  E  +  +   +    T +  L   + 
Sbjct: 1429 KQEHQEISNTLYSQLNQSEINLNSQKQVLEKL-QELKIMDKSKKKIISDTSESTL--IRN 1485

Query: 269  LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQ 327
            ++   I       +A+++       L   +N    R+      LGA   GR+S      Q
Sbjct: 1486 MSNPIISSLREYRKANKALTAFTQKLPNHINPITKRIYPNYNQLGAES-GRFSCDGPNLQ 1544

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
             +PR                                 R C +A +G K V+AD + IE R
Sbjct: 1545 QVPRD-----------------------------KKFRECFVAPKGSKFVIADFSQIELR 1575

Query: 388  VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
            + A +A +   ++A++   DL+  T +   N     V K++R + K +   L +      
Sbjct: 1576 IAAEIANDPKMIQAYQQKVDLHSLTASILKNKNINDVNKEERQLAKAVNFGLIFGMSING 1635

Query: 448  FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             +  A                                      E            + + 
Sbjct: 1636 LRMYA--------------------------------------ETGYNLKLTQNEAKEIY 1657

Query: 508  KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             ++      +    N +             +     R                       
Sbjct: 1658 TSFFNNFKGILNWHNSVKN------SRPTMVRTLGNRLSVFESFSFT------------- 1698

Query: 568  LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD 623
                                        +     VQ  S DI  E M             
Sbjct: 1699 ----------------------------RSLNYPVQGTSADITKETMARLVDLVKPLNAK 1730

Query: 624  IVLTVHDEIVCETPDT-DEFNASMLYHLM-TSNPSWAKGLPLKAEGYESKRY 673
            I++ VHDEI+ E P+   E    ML   M  S   + K +P++A G     +
Sbjct: 1731 IIICVHDEIILEVPEDNAEKALKMLIDTMVKSGEKYLKKVPVEAMGSIGDSW 1782


>gi|258616062|ref|ZP_05713832.1| DNA polymerase I [Enterococcus faecium DO]
          Length = 838

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/624 (12%), Positives = 175/624 (28%), Gaps = 139/624 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++  A+G +          +D  + +       + +       +++      L      
Sbjct: 335 EIVGVAWGTEKK----IYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTG- 389

Query: 87  DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                      L+ A           ++ +      +  + +E              + L
Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------AVYGKGAKKGL 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +  +       R           +++E+ ++ +    ++ EL    +   +   G  VD
Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISGIKVD 501

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 +         +++Q++         +    ++L   LF + GL +   T+   +
Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYS 560

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   ++  P    +   R   ++     +  L++ + SDG++         ++TG
Sbjct: 561 TAVDVLEQLREQAPIVEDILTYRQ-IAKIQSTYVEGLLKVIQSDGKVHTRYVQ-TLTQTG 618

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   +  E    +
Sbjct: 619 RLSSVDPNLQNIPIRLDEGRK-------------------------IRQAFVPREKDWLI 653

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVM 435
             +D + IE RVLA ++ ++    AF  G+D++ +T  R F +     VT + R   K +
Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAV 713

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++    +                                
Sbjct: 714 N--------------FGIVYGISDYGLSQ------------------------------N 729

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                 A ++    + +K+  V E    + +  +                          
Sbjct: 730 LGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD------------------------- 764

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +     R     D+ +             R            +Q  + DIL   M+
Sbjct: 765 -QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINTP------IQGSAADILKIAMI 814

Query: 616 NATKA------GYDIVLTVHDEIV 633
              K          ++L VHDE+V
Sbjct: 815 ELDKRLKETGLQATMLLQVHDELV 838


>gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC]
 gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC]
          Length = 868

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/660 (16%), Positives = 202/660 (30%), Gaps = 138/660 (20%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            +   A     + V   +      +  +LK+   +       + S  +   L     +D+
Sbjct: 329 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 385

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            +      LVLA        L + G  +   +  ME G    A F   E           
Sbjct: 386 HVTA--D-LVLA------EHLVSGGAKISFQTLLMESGHIQEAVFFSKEWGAGSLPVQSL 436

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVA 202
                 + FG      + +   +F +LE         + EQ L  +   +   G  +D  
Sbjct: 437 PRD-PLQYFGMLASKLLAIKNYLFVKLEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQ 495

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
               L++ +  E  +  QE+  L      + +  ++L   L+   G+   D  ++T   V
Sbjct: 496 GLAVLDRDLTKELEECSQEIYDLVGC-EFNIKSPKQLSDILYQRLGIEPVDKAKSTKAEV 554

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSG 321
           L + +       ++   R    +     +  L + +N+   R+  T   +G + TGR S 
Sbjct: 555 LEALEDRHEIIPKILMFR-ATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRLSC 612

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380
                QN+P  S                              +R      +     + AD
Sbjct: 613 QDPNLQNIPVRSERGR-------------------------SLREAFRVKKDNDYFLAAD 647

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R LA ++ ++   +AF +GED++  T ++ FNV   QVTK QR   K +     
Sbjct: 648 YSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVN---- 703

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G                              +     +       
Sbjct: 704 ----------FGLVYG------------------------------QQAYGLSKILKISV 723

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
           +  + +  A+  ++   +E    + Q  EQ  +N K                        
Sbjct: 724 SEAQGLMDAYFARYPLAAEF---ITQTIEQASKNQKVTTML------------------- 761

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
               GR  +  D  ++                 G       +Q  + +++   M+N +  
Sbjct: 762 ----GRERILSDWESSPGAR----------AASGRLAVNTRIQGSAAELIKLAMLNISDE 807

Query: 621 ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                    ++L +HDE++ E P  +     S++   M S       +PL       K +
Sbjct: 808 MRSRGLKSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 865


>gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
 gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae
           TIGR4]
 gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I
 gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4]
          Length = 877

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/678 (14%), Positives = 187/678 (27%), Gaps = 156/678 (23%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVL--------KEALENTDVTIVAHNSYFERT 78
              +    +  D+    +W C         L        K+ LE T + +      ++  
Sbjct: 321 HFELFGENYHTDNLVGFVWSCGDKLYATDKLELLQDPIFKDFLEKTSLRV------YDFK 374

Query: 79  ---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK 135
              VL   F +D+         +                        +            
Sbjct: 375 KVKVLLQRFGVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDD 424

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLD 189
              +     +  P   +            V     + ++L            EQ L ++ 
Sbjct: 425 ETFYGKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVL 484

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V       +    ++   KL QE+  L      +    ++L   LF + GL
Sbjct: 485 AKMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGL 543

Query: 250 HL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            L     T+   +T   VL     + P   ++ + R   ++     +  L + + +DG++
Sbjct: 544 PLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKI 602

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
                    ++TGR S      QN+P                                 +
Sbjct: 603 HTRYVQD-LTQTGRLSSVDPNLQNIPARLEQGR-------------------------LI 636

Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422
           R   +   E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P 
Sbjct: 637 RKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPD 696

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT + R   K +   +                G++    ++                  
Sbjct: 697 DVTANDRRNAKAVNFGVV--------------YGISDFGLSN------------------ 724

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                +     + ++   +    +E+ +                
Sbjct: 725 ------------NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD------------ 760

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +     R     D+ +             R            +
Sbjct: 761 --------------KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------I 797

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DIL   M+   KA         ++L VHDEIV E P ++      L    M    
Sbjct: 798 QGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAI 857

Query: 656 SWAKGLPLKAEGYESKRY 673
                +PL A+  E   +
Sbjct: 858 Q--LSVPLIADENEGATW 873


>gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1]
          Length = 912

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/664 (14%), Positives = 179/664 (26%), Gaps = 147/664 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSY-----FERTVLKACFNL 86
            A      P   +D        +    + + + +   V H++      F+          
Sbjct: 368 IALAAASGPAVCFDPSAVDEPDERAFADWIADPERPKVMHDAKRVMRVFDEQ------GW 421

Query: 87  DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142
            +       T + A          AL A+  E L          +     F   E  E  
Sbjct: 422 AVAGAAM-DTALAAYLVKPGRRSFALDALSVEYLGRELSPAAAAESGQLAFGADEQAEQD 480

Query: 143 YDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
               +          FG        V          L   E  +  L   +   G   D 
Sbjct: 481 ALMIQARTILDLGEAFGRRLAEVGAVEL--------LRDVELPISALLARMEKAGIAADR 532

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---T 258
                ++Q       +  +E          +    ++L+   F E GL      +T   T
Sbjct: 533 DWLDRMDQRFAGAVQQAVKEAHDAVGH-EFNLGSPKQLQEVFFGELGLPKTKKIKTGYTT 591

Query: 259 CQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
               L+    +   +   +       +R     +  L++A+   GR+  T     A+ TG
Sbjct: 592 DADALAWLATQTDHELPVIMLRHREQARLRST-VEGLIKAIAPGGRIHTTFNQTVAA-TG 649

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-L 376
           R S      QN+   +                              +R   +  EG + L
Sbjct: 650 RLSSTDPNLQNVHVRTEEGRA-------------------------IRRGFVVGEGFESL 684

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE RV+A ++ ++  ++AF +GEDL+ T  ++ F VA ++V  + R   K M 
Sbjct: 685 LTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFGVAKSEVDPEMRRKIKAMS 744

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              GL+    +                                 
Sbjct: 745 Y--------------GLAYGLSAFGLSQQ------------------------------L 760

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                   ++   + ++   V +    L +  ++    G                     
Sbjct: 761 GITPDEARKLMDTFFERFGGVRDY---LQRVVDEARATGYTETML--------------- 802

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                   GR     D+ ++            R            +Q  + DI+   M+ 
Sbjct: 803 --------GRRRYLPDLNSDN---RQRREMAERMALNAP------IQGTAADIVKIAMLR 845

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
             +A         ++L VHDEIV E    +      L    M     +    PL      
Sbjct: 846 VDEALTKEKLSSRMLLQVHDEIVVEVAPGEREQVEALVRREMAGA--FHLRAPLDVSVGA 903

Query: 670 SKRY 673
              +
Sbjct: 904 GTDW 907


>gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440]
 gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440]
          Length = 899

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/636 (15%), Positives = 175/636 (27%), Gaps = 133/636 (20%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNGL---PSALK 110
             L   L +     V H+S     VL        I       T + A           L 
Sbjct: 375 DALAGWLADVSRPKVLHDSK--PAVLAFAARGCAIQGIA-RDTQIAAYLARPDQRSYDLT 431

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +         +  +  E       G  ++   ++N                 D  ++R+
Sbjct: 432 DLALRYLHRELR-VDLPETGQLTLDGLGNDGEAEQNLMLRA--RATLDLADAIDAELSRD 488

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             +    ++  E  L  +   +   G   D      L      E     Q          
Sbjct: 489 GEQSARLMAEVELPLMRVLAGMERTGIAADTQYLSELEAHFAAEVKAAAQGAYEAVG-RE 547

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN--KKLTPQAIQVFNNRMRASR 285
            +    ++L+  LF E GL      +T   T    L     +   P    +  +R   ++
Sbjct: 548 FNLGSPKQLQEILFGELGLPKTKRIKTGYTTDADALQWLYGQNPHPVLGHLLRHR-DVAK 606

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                ++ L+++++ DGR+  T     A+ TGR S      QN+P  +            
Sbjct: 607 LKTT-VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRTEEGRR------- 657

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404
                             +R   +   G + L+ AD + IE R++A ++ ++  + AF +
Sbjct: 658 ------------------IRRAFVVGTGYECLLTADYSQIEMRIMAHLSADEALIDAFNS 699

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D +  T +  F V    VT DQR   K M   L                GL+    + 
Sbjct: 700 GLDFHAATASSVFQVPVEAVTADQRRKIKAMNYGL--------------AYGLSAFGLSQ 745

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                    + + +      V +   E+
Sbjct: 746 Q------------------------------LGVTAEEARGLMETYFAGFGGVRDYLQEV 775

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                +                          +       GR     D+ ++        
Sbjct: 776 VARARR--------------------------DGYTESVLGRRRYLPDLVSDN---RQRR 806

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPD 638
               R            +Q  + DI+   MMN   A         ++L VHDE+V E   
Sbjct: 807 EMAERMALNAP------IQGSAADIIKVAMMNVDAAVREAGLRSRMLLQVHDELVFEVAP 860

Query: 639 TDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            +      L    M         +PL+    + + +
Sbjct: 861 GEREALEALVRREMGGAFP--LSVPLEVSVGDGRDW 894


>gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5]
 gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5]
          Length = 875

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/632 (13%), Positives = 181/632 (28%), Gaps = 146/632 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++   L +  +  + ++      +LK   N    I       ++  +     +     +
Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLS----QK 427

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L     K    + +I    K   +     +      +  + F  Y   D          
Sbjct: 428 ILFKEVLKETLIENIIIESAKIVINFISLYKQTILELKDNKTFRLYSDID---------- 477

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                     + ++   +   G  V+      L+     E  KL++E+ +L+     +  
Sbjct: 478 --------LPICFILDKMEKVGITVNANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIG 528

Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             ++L   LF +  L          + +T   +L    +       +     + ++    
Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             ++L + +++      T     ++ TGR S      QN+P  S                
Sbjct: 589 YTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNIPTRSSEGN------------ 636

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++
Sbjct: 637 -------------QIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T  + FN+   ++T + R   K +                    G++           
Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 718

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                  A +            K +  ++  V E   +      
Sbjct: 719 -------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA- 758

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                                     +N  +    GR      + + +       +   R
Sbjct: 759 -------------------------SSNGYVTNFFGRKCFVPLIHDKK-----LKQFAER 788

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+N        K    +VL +HDE++ E P  +   
Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEI 842

Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
              ++  +M +  S    +P+  E      + 
Sbjct: 843 ITPIIKKIMEN--STNMDVPIITEIRAGNNWM 872


>gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331]
          Length = 886

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/600 (15%), Positives = 166/600 (27%), Gaps = 135/600 (22%)

Query: 86  LDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
           + +     +   VL            L  +             G+ L  R         L
Sbjct: 405 VPLEPRALVDLEVLGWLVDSADVAHGLDQLARRW--------LGRHLDDRGPLEAEAAPL 456

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
             R         R   E    +  +   +          E  L  +   +   G  +D  
Sbjct: 457 GARQWVEVVHPIREALERRLTEDDL-WRLAT------DVEIPLTRVLTDMEIHGVAIDRD 509

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
           +   +   +  ER +   E+     G   +     +L   LF   GL     T+   +T 
Sbjct: 510 VLAAIGTELATERDRALAEVRH-YAGGELNPNSPRQLAVVLFERLGLPAGRKTKTGYSTD 568

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            RVL S +   P    +   R    +        L   + +DGR+  T     A RTGR 
Sbjct: 569 ARVLESLRDAHPIVAAILRFR-ELDKLLSTFYEGLRSEIGADGRIHATFNQAVA-RTGRI 626

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  +   +                           R   +A+EG  LV A
Sbjct: 627 SSERPNLQNIPVRTDEGKRF-------------------------RDAFVATEGHVLVAA 661

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA ++G++  ++      D++    AR F V   +VT  QR++ K++   L
Sbjct: 662 DYSQIELRVLAHLSGDEELVRILSGDGDVHTLVAARVFGVPAERVTPQQRSVAKMVTYGL 721

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                                                                A      
Sbjct: 722 --------------------------------------------SYGMEAYGLAQRLGVP 737

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               E +   +      +    +    A                                
Sbjct: 738 PAEAEGILADFFAAFPGLRHYRDASVDAAR--------------------------AQGF 771

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                GR     D+ +      T  +   R+    G       Q ++ DI    ++    
Sbjct: 772 TTTLLGRRRYLPDLDSPN---RTVRQGAERQAMNAGT------QGLAADIFKIALVRLHA 822

Query: 620 AGYD----IVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           A       +VL VHDE+V E   +      +++  ++     +A  +PL+ +    + + 
Sbjct: 823 ALSPTDGALVLQVHDEVVVEAVAERAHDVRALVEDVLEHA--FALRVPLRVQSGVGRSWG 880


>gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
 gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029]
          Length = 899

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/629 (15%), Positives = 176/629 (27%), Gaps = 129/629 (20%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEAL 116
            L + +   V H+S        A    ++       T + A           L  +    
Sbjct: 380 WLADAERPKVLHDSKPAVLAFAAH-GWELHGIA-RDTQIAAYLARPDQRSYDLTDLALRY 437

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                +  +  E       G   E + ++N     +A          D  ++R+  +   
Sbjct: 438 LHRELR-VDAPETGQLTLDGLGDEGVAEQNL--MLQARATLDLADAIDAELSRDGEQSAR 494

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            ++  E  L  +  T+   G   D      L      E     Q    +      +    
Sbjct: 495 LMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEVVG-REFNLGSP 553

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L+  LF E GL      +T   T    L     +     +         ++     ++
Sbjct: 554 KQLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKST-VD 612

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L+++++ DGR+  T     A+ TGR S      QN+P  +                   
Sbjct: 613 GLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRTEEGRR-------------- 657

Query: 353 DPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                      +R   +  EG + L+ AD + IE R++A ++ +   ++AF +G D +  
Sbjct: 658 -----------IRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFHAA 706

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T +  F V    VT DQR   K M                    GL+    +        
Sbjct: 707 TASSVFTVEVGDVTADQRRKIKAMNYG--------------LAYGLSAFGLSQQ------ 746

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                             + + +      V +   E+     Q 
Sbjct: 747 ------------------------LGISAEEARGLMENYFAGFGGVRDYLQEVVARARQ- 781

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                    +       GR     D+ ++            R  
Sbjct: 782 -------------------------DGYTSTILGRRRYLPDLVSDN---RQRREMAERMA 813

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS 645
                     +Q  + DI+   M++   A         ++L VHDE+V E    +     
Sbjct: 814 LNAP------IQGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERETLE 867

Query: 646 MLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
            L    M     +   +PL+    E   +
Sbjct: 868 ALVRKQMGEA--YPLSVPLEVSVGEGHDW 894


>gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
 gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM
           14600]
          Length = 910

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/603 (14%), Positives = 168/603 (27%), Gaps = 137/603 (22%)

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            R     V A           +  +        ++    I  + +               
Sbjct: 421 GRSFDLQVAAYLLDP------LSSSYPTEDIARDQLALSIPSYSEFFGK--KKADQIWED 472

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVD 200
            E       Y      V     ++L     ++            L Y    +   G  V+
Sbjct: 473 PEEVEHRMHYACYQAYVASRAPQKLLKRLEEQGMRALYEEVELPLVYTLYDMETAGIAVE 532

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                +    +     +L++ +         +    ++L   LF + GL     T+   +
Sbjct: 533 KEALKSYGDQLVGRINELEEGIYREAG-ETFNINSPKQLGEVLFGQLGLPGARKTKTGYS 591

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL            V   R   ++      + L + +  DGR+  + Q    + TG
Sbjct: 592 TAADVLDPLAVNYQIVRDVLEFRQ-LTKLKSTYADGLAKVIADDGRIHSSFQQ-TVTATG 649

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P      +E                         +R    A EG   V
Sbjct: 650 RLSSTEPNLQNIPIRMELGKE-------------------------IRRVFPAMEGCVFV 684

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            +D + IE RVLA ++ +   ++A+  G+D++  T +  F+    +VT  QR+  K +  
Sbjct: 685 DSDYSQIELRVLAHLSQDPKLIEAYRQGKDIHRATASLVFHTPFEEVTDQQRSNAKAVNF 744

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            +                G++                                  A +  
Sbjct: 745 GIV--------------YGIS------------------------------AFGLAKDLG 760

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +     +   + R+ +  + L +      + G A+                   
Sbjct: 761 ISREEAQEYIDGYFAAYPRLHDYLDGLVEFAR---KEGYAVTL----------------- 800

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR     ++ N+            R            VQ  + DI+   M+  
Sbjct: 801 ------FGRRRPVPELKNSNFMQRQF---GERVAMNAP------VQGTAADIIKIAMVRV 845

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670
                       ++LTVHDE++ ET + +E     +    M         + L+ + +  
Sbjct: 846 HDRLAKEGLRSRLILTVHDELLVETFEQEEQEVREILDQEMRGAAQ--LSVELEIDTHSG 903

Query: 671 KRY 673
           + +
Sbjct: 904 RNW 906


>gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg]
 gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss]
 gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14]
 gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg]
          Length = 866

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 103/663 (15%), Positives = 195/663 (29%), Gaps = 144/663 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            +   A       V   +   D  +  +LK    +       + +  +   LK    +D+
Sbjct: 327 RLHGVALS-GGDEVFYIEISGDQEI-ALLKAFFADATTKFFGYRTKRDNHALKNH-GIDV 383

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA-RFCKGETHECLYDRNK 147
            +      LVLA        L   G  +   +  +E G    A  F K      L  +N 
Sbjct: 384 HVTA--D-LVLA------QHLVNGGAKISFQTLLVESGHIQEAAFFAKEWGASSLPVQNL 434

Query: 148 PNHREA--------WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
           P +                 Y         E         + EQ L  +   +   G  +
Sbjct: 435 PQNPAQYFGIFVSRLPSIKNYLFEK----LEEKGLKSIFKNVEQPLEEILFAMECAGMPL 490

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           D      L++ +  E     QE+  L      + +  ++L   L+   G+   D  ++T 
Sbjct: 491 DSEGLLVLDRDLSKELETYTQEIYDLAGC-EFNIKSPKQLSDVLYHRLGIKPVDKAKSTK 549

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGR 318
             VL + +       ++   R    +     +  L   ++    R+  T   +G + TGR
Sbjct: 550 AEVLEALEGSHEIISKILAFR-ATEKMLSTYVRALPRQIDLGTHRVHPTFNQVG-TVTGR 607

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLV 377
            S      QN+P      +                          +R       E    +
Sbjct: 608 LSCQDPNLQNIPVRYERGK-------------------------SLREAFRFTKENDYFL 642

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + +E R LA ++ ++   +AF++GED++  T ++ FNV   QVT+ QR   K +  
Sbjct: 643 AADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAVN- 701

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G                              +     +    
Sbjct: 702 -------------FGLAYG------------------------------QQAYGLSKNLK 718

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 + +  A+  ++ + SE    +    EQ  +  K                     
Sbjct: 719 ISVNEAQGLIDAYFARYPQASEF---ITHTIEQASKEQKVTTML---------------- 759

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR  +  D  ++                 G       +Q  + +++   M+N 
Sbjct: 760 -------GRERILSDWESSPGAR----------AASGRLAVNTRIQGSAAELIKLAMLNI 802

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670
           ++          ++L +HDE++ E P  +     +L    M S  S    +PL       
Sbjct: 803 SRELVSRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQEKMESAMS--LSVPLVVNVLIG 860

Query: 671 KRY 673
           K +
Sbjct: 861 KNW 863


>gi|332201961|gb|EGJ16030.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41317]
          Length = 877

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/669 (14%), Positives = 186/669 (27%), Gaps = 154/669 (23%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     +     ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIALIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   +                G++    ++                           
Sbjct: 706 AKAVNFGVV--------------YGISDFGLSN--------------------------- 724

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       +     + ++   +    +E+ +                         
Sbjct: 725 ---NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD--------------------- 760

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                   +     R     D+ +             R            +Q  + DIL 
Sbjct: 761 -----KGYVETLFKRRRELPDINSRNF---NIRGFAERTAINSP------IQGSAADILK 806

Query: 612 EGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
             M+   KA         ++L VHDEIV E P ++      L    M         +PL 
Sbjct: 807 IAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEMKKLVKQTMEEAIQ--LSVPLI 864

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 865 ADENEGATW 873


>gi|241889843|ref|ZP_04777141.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
 gi|241863465|gb|EER67849.1| DNA polymerase I [Gemella haemolysans ATCC 10379]
          Length = 879

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/697 (12%), Positives = 191/697 (27%), Gaps = 167/697 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAED---VCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEA 60
           IDF T S        +  Y ED     V+     + +    ++    +      + + + 
Sbjct: 317 IDF-TDS-----TLHVECYTEDYHNSDVVGI-VVYKEGTAYIF---SEEQFFTNEFVVDY 366

Query: 61  LENTDVTIVAHNSYFE---RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           L++  ++       ++      +     +DI         +++    + +         K
Sbjct: 367 LQSE-ISKTV----YDFKKILFIAKRNGVDIN-GEVFDVKIVSYLLDVNA---------K 411

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               K+     L       E       +     +E       Y          I   +E 
Sbjct: 412 TEIDKIVFNY-LGKIMSSDEEIYGKGAKRTLPAQEVIN---PYIAEIAESIALIKPLMEE 467

Query: 178 LS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E ++  +   +   G  V       ++   D     L+  + +L  
Sbjct: 468 KLAEENMTDLYKDIEIKVAKVLANMEYEGIHVSKKALEEMSAEFDERIKTLEASIYTLAG 527

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    ++L   LF + GL     T+   +T   VL   +        +   R   +
Sbjct: 528 S-EFNIASPKQLGVVLFEDLGLPPIKKTKTGYSTAVEVLEQLQHSHEIIPLIMEYR-TIT 585

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +        LV+ +  +G++    +   A +TGR S      QN+P      ++      
Sbjct: 586 KLNSTYAKGLVKDITREGKIHTRYEQTLA-QTGRLSSVNPNLQNIPTRIEEGKK------ 638

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                              +R   +  S+ + ++  D + IE RVLA +A ++  + AF+
Sbjct: 639 -------------------IRKAFVPASDDRVILSIDYSQIELRVLAHIAQDKGMIDAFK 679

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D++  T +    V+  +VT   R   K +                    G++    +
Sbjct: 680 HDVDIHTKTASDVNGVSLDEVTSSMRREAKAVNF--------------GIVYGISDFGLS 725

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
           +                                       +     + +    V +   +
Sbjct: 726 N------------------------------NLGITRKRAKEFIDKYLETFKGVDKYMTD 755

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           +     +                          +  +     R     D+      +   
Sbjct: 756 IVDFARE--------------------------HGYVETLFNRRRALPDINAKNKIV--- 786

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETP 637
                           + +Q  + DI+   M+N       T     ++L VHDE++ +  
Sbjct: 787 ------ANLNARIAMNSPIQGTAADIIKIAMVNVFEYLEKTNVDAKLLLQVHDELIFDVN 840

Query: 638 DT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +E     +  +M         + LKAE      +
Sbjct: 841 KDIEEEFTKEMIKIMEEAA--NLDVQLKAEASSGASW 875


>gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 838

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 102/669 (15%), Positives = 195/669 (29%), Gaps = 155/669 (23%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           P DL          D   +      ++  VE  D                  +   +   
Sbjct: 316 PADLFSTPEVAVIHDFERV---IAINEGYVE-VDFKEIEEFL---------PEKGKI--- 359

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
             F+   L       +    +I   V                      QK    K+++ +
Sbjct: 360 YTFDLKSLYHKVGEKLRNFSFIDLSVCEYLLNP--------------LQKDYSSKDILKK 405

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                + E + D           +  E  K  +    E         S E  L ++   +
Sbjct: 406 RLGVVSLEEVKDYVHYTLDIGKEILNELKKEGLENLYE---------SIEHPLTFVLYKM 456

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
             RG   D        + +D +  ++++++  +      +    ++L   LF +  L   
Sbjct: 457 EKRGVLFDKEYLENFGKELDRKSKEIEKKIFEIAG-EKFNLNSPKQLSKILFEKLKLKPL 515

Query: 253 DL---TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
                  +T    L++      +  ++     + ++     +  +++ M+ DGR+R T  
Sbjct: 516 KKTKSGYSTDVETLTALALKGHKIAELLLEYRKLTKLNSTFVKGILKHMDEDGRVRTTFI 575

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
             G + TGR S      QNLP                             IS  +R  V 
Sbjct: 576 QTG-TATGRLSSAEPNLQNLP-------------------------VSDEISKKIRYAVT 609

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A  G  LV AD + IE R+LA ++ ++  L+A+  G D++  T +  F ++  +V +  R
Sbjct: 610 APAGYNLVWADYSQIELRILAHLSQDEKLLEAYRKGRDIHTETASYLFGISAEEVDERLR 669

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
            I K +                    G++ +  +                          
Sbjct: 670 RIAKTVNF--------------GIIYGMSPHGLSER------------------------ 691

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                         E+    + +K  +V E    +     +  E G              
Sbjct: 692 ------LGISVEEAEKYIDRYFEKFPKVKEY---IENTLREAYEKGYVKTI--------- 733

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR     ++ ++            R            +Q  + DI
Sbjct: 734 --------------FGRKRPLPELKSSN---KNIRSFGERAA------VNATIQGTAADI 770

Query: 610 LAEGMMNATKA----GYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLK 664
           +   M+   K     G  +VL VHDEIV E   +  E    ++   M +   +   +PL 
Sbjct: 771 MKLAMVKLYKKLEKLGAYMVLQVHDEIVIEALEEKTEEIMKIVKETMENVVEF--SVPLT 828

Query: 665 AEGYESKRY 673
            +    K +
Sbjct: 829 VDVKVGKHW 837


>gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 913

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/646 (14%), Positives = 173/646 (26%), Gaps = 135/646 (20%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +D        +      + +     V HN+     V        +       T + A  
Sbjct: 382 WFDTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITM-DTALAAYL 439

Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   AL A+                 +A                    +    F  
Sbjct: 440 VKPGRRSFALDALSVEYLHRELVPAAADGQLAFGTDEHAEADALMAQARAVLDLGDAFTA 499

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +  V  T  +          E     L   +   G   D A   ++  +      +  
Sbjct: 500 RLEE-VGATELLH-------DMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAV 551

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKL-TPQAIQ 275
           +E  +       +    ++L+   F E  L     T+T        L+        +   
Sbjct: 552 KEAHATVGH-EFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELPV 610

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +       +R     +  L++ + +DGR+  T     A+ TGR S      QN+P  +  
Sbjct: 611 IMLRHREQARLRST-VEGLIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRTDE 668

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394
                                       +R   +  EG + L+ AD + IE RV+A ++ 
Sbjct: 669 GRA-------------------------IRRGFVVGEGFESLMTADYSQIELRVMAHLSQ 703

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AF +GEDL+ T  ++ F VA ++V  + R   K M   L               
Sbjct: 704 DEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGL--------------A 749

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            GL+    +  +   +                                   +   + ++ 
Sbjct: 750 YGLSAFGLSQQLNIEAG------------------------------EARALMDTYFERF 779

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +    +      T                                 GR     D+ 
Sbjct: 780 GGVRDYLRHVVDEARAT--------------------------GYTATMLGRRRYLPDLN 813

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
           ++            R            +Q  + DI+   M+   +A         ++L V
Sbjct: 814 SDN---RQRREAAERMALNAP------IQGTAADIVKIAMLRVDRALREAGLSSRLLLQV 864

Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           HDEIV E    +      +    M+S    +   PL         +
Sbjct: 865 HDEIVLEISPGERDEVETIVRREMSSAVELSA--PLDVSVGVGADW 908


>gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 912

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 91/671 (13%), Positives = 181/671 (26%), Gaps = 151/671 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            V        +               + +  +          H+     + LKA     +
Sbjct: 362 DVHGIGLS-SEESAAFIPLTGLDEAAEQVLASWLKGSAPKAVHDLK---SALKALSGRGL 417

Query: 89  PI-HRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +      T + A           L  +      +   +   K+        E  +   +
Sbjct: 418 DLDGVVDDTSISAYLIQPERRNYDLADLSLYHLETPMTVSASKDAGQLDLGLEGDDGAQE 477

Query: 145 RNK-PNHREAWRLF-----GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
                   +    F      E     +    E+             L  +   +   G  
Sbjct: 478 AVLRAFATQKLSSFFAPILLERNAEQLLTGLEL------------PLARVLSGMELAGVA 525

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           V      TL             E  ++    V +    ++L+T LF E G+      +  
Sbjct: 526 VSKETLDTLMADFGKTIETAQTEAYAIIGHEV-NLGSPKQLQTVLFDELGMPKTKKIKTG 584

Query: 257 -TTCQRVLSSNKKLTPQAIQV-FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
            +T    L+      P    +       A++     +  L++++ SD R+  T     A+
Sbjct: 585 FSTDAEALADLTTKHPHPFLLQLQAYRDATKLRQT-VEGLIKSIGSDTRVHTTYAQNVAA 643

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG- 373
            TGR S      QN+P  S                              +R   +  +  
Sbjct: 644 -TGRLSSNNPNLQNIPIRSEEGRR-------------------------IRGAFVVGQKS 677

Query: 374 ----KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
               + L+ AD + IE R++A ++G++  ++AF+ GEDL+    +  FNV P +VT   R
Sbjct: 678 TKSYETLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDLHRFVGSHIFNVEPQEVTSAMR 737

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           +  K M   L Y            +  LN++                             
Sbjct: 738 SKVKAMSYGLVYG-----LSSFGLSKQLNIS----------------------------- 763

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                           + K +  +   V +    + +                       
Sbjct: 764 ----------VDEARTLMKDYFDRFGAVRDYLRGVVEQAR-------------------- 793

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                  +        R     ++ ++            R            +Q  + DI
Sbjct: 794 ------LDGFTETIESRRRYLPELTSDN---RQLREMSERAALNAP------IQGSAADI 838

Query: 610 LAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLP 662
           +   M+              ++L VHDE+V E  + +     +++   M    +    +P
Sbjct: 839 IKRAMLGVDAGIAEAGLESRMLLQVHDELVFEVAEGELDQVQALVIAQM--AVAANLTVP 896

Query: 663 LKAEGYESKRY 673
           L  +    K +
Sbjct: 897 LDVQVGIGKSW 907


>gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
 gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271]
          Length = 905

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 88/633 (13%), Positives = 178/633 (28%), Gaps = 145/633 (22%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
           D  +     E L +  V  +  +     + L     + +   ++    + A       + 
Sbjct: 401 DKNVLAKWHELLGSPRVFKIMADHKTLYSALAN-EGVRLDGLKY-DLSLAAYLMNPTRSS 458

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
               E L   + ++       A     E         +           E          
Sbjct: 459 YQAAELLSGQADELFFSAAREAGLLAHEFENSRKKLEELGLSSLLHELEE---------- 508

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                          L  +   +  +G  VD  +   +   ++ +   +++++  +    
Sbjct: 509 --------------PLSIVLAEMERQGISVDREMLEQIGFELEKKIAVIEEDIYQIAGVS 554

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    ++L   LF +  L      +   +T    L           ++   R    + 
Sbjct: 555 -FNINSPQQLGKVLFEQLELPPLKKIKTGYSTDAETLEELAGQHCIVEKILEFRH-LVKL 612

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
               +  L+  +  DG++  T Q +  + TGR S      QN+P       +L       
Sbjct: 613 NSTYVKGLLGQLR-DGKVHTTFQQMV-TATGRLSSTEPNLQNIPIRMEEGRKL------- 663

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                             R   + S G  +L  AD + IE RVLA  + +    ++F+TG
Sbjct: 664 ------------------RKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQTG 705

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED++  T +  F V   QVT D R   K +                    GL        
Sbjct: 706 EDVHARTASEVFGVPLEQVTPDMRRKAKAVNF--------------GLMYGLTDFGL--- 748

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                      A +        +   + + Q++S V +    L+
Sbjct: 749 ---------------------------ARDIRIPRKEAKFYIERYFQRYSGVKKY---LN 778

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
            +    +E G+                             R     ++ +      T  +
Sbjct: 779 DSVVNAMETGETRTLLN-----------------------RLRQTPELNHQN---RTVRQ 812

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDE 641
              R            +Q  + DI+   M+   +A      +++L VHDE++ E      
Sbjct: 813 FGQRIAMNSP------IQGTAADIMKLAMIRVDEAMKGLEANLLLQVHDELLLEVSARAL 866

Query: 642 FNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
              + +    M S       +PL+ +      +
Sbjct: 867 PEVAQIVKTEMESA--LLLTVPLQVDCKTGVNW 897


>gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 887

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/592 (14%), Positives = 167/592 (28%), Gaps = 131/592 (22%)

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
             T +             + +  +   QK     +           +   +         
Sbjct: 410 HDTAIAGYLLRPGQRTYEIADVYQRHLQKQLPQSD----GQLSLLDDSPSEPLLIEAMAV 465

Query: 154 WRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             L          +   E++         E  L  +   + D G  VD            
Sbjct: 466 LELVPRLTDELSDIESLELYT------DLEIPLITILAAMEDTGIAVDTHTLEEQLDGFV 519

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK- 268
               + ++    L      +    ++L+  LF    L     T+   +T  + + +  K 
Sbjct: 520 DLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEALAKK 579

Query: 269 -LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P    +  +R   S+     L  L+ ++  DGR+  T +   A  TGR S      Q
Sbjct: 580 TDHPFLQHLLAHR-EYSKMKST-LEGLIRSVGGDGRIHTTFKQTVA-STGRLSSTDPNLQ 636

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEA 386
           N+P  + + ++                         +RS  +  EG   L+ AD + IE 
Sbjct: 637 NIPVRTDAGKK-------------------------IRSAFVVGEGFETLLTADYSQIEM 671

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RV+A ++ +   ++A++ GEDL+    ++ F+V   +VT + R   K M   L Y     
Sbjct: 672 RVMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAY----- 726

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    GL+    A  +                                     + +
Sbjct: 727 ---------GLSSYGLAAQLDI------------------------------PQGEAKSI 747

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             ++ ++   V      +     +                          +       GR
Sbjct: 748 MDSYFERFGGVKNYLRSVVDEARK--------------------------DGYTSTLFGR 781

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622
                ++ +             R            +Q  + DI+   M+   +       
Sbjct: 782 RRYLPELTSTN---RIARENAERAALNAP------IQGTAADIIKVAMVRVNRRLDSLKS 832

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E    +    S +    M    S    +PL+        +
Sbjct: 833 RVLLQVHDELVLEVAPGELEEVSRIVSEEMDGAIS--LRVPLEVSTGHGTNW 882


>gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
 gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 908

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 101/682 (14%), Positives = 196/682 (28%), Gaps = 162/682 (23%)

Query: 23  KYAEDVCVILFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79
            Y  D   +       D      D      +      L   L +       H +      
Sbjct: 353 AYDADATALAIVAA--DGDGRYIDTSTLTPEDE--AALASWLADPGPPKALHEAK----- 403

Query: 80  LKACFNLDIPIHRWI------CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELI 130
           L      D+    W        T + A           L  +                 +
Sbjct: 404 LAMH---DLAGRGWTLRGVTSDTALAAYLVRPGQRSFTLDDLAVRY---------LHREL 451

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQE 184
                 +    L D +     +A +         + +   + + L  +      S  E  
Sbjct: 452 RAETPEQQQLSLLDDSDGVDEQAVQTVILRACAVLDLADALDQELARIDSLSLLSRMELP 511

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           +      +   G  VD+ +   L      +     +   S+    + +    ++L+  LF
Sbjct: 512 VQRTLAEMEHAGIAVDLGMLEQLQSEFADQIRDAAEAAYSVIGKQI-NLGSPKQLQAVLF 570

Query: 245 LETGLHLEDLTETT---CQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
            E  +     T+T        L S  +    P    +  +R  A+R  V  ++ L+ ++ 
Sbjct: 571 DELEMPKTKKTKTGYTTDADALQSLFEKTGHPFLQHLLAHR-DATRLKVT-VDGLLNSVA 628

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           SDGR+  T     A+ TGR S      QN+P  + +                        
Sbjct: 629 SDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEAGRR--------------------- 666

Query: 360 ISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R   +  EG  +L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F+
Sbjct: 667 ----IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFS 722

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V   +VT + R   K M   L                GL+                    
Sbjct: 723 VPIDEVTPELRRRVKAMSYGL--------------AYGLS-------------------- 748

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                         A +        +   + +  +   V +   ++     +        
Sbjct: 749 ----------AYGLAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVDQARK-------- 790

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                             +       GR     ++ ++            R         
Sbjct: 791 ------------------DGYTSTVLGRRRYLPELDSSN---RQVREAAERAALNAP--- 826

Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651
              +Q  + DI+   M+N  +A         I+L VHDE++ E  + ++     L    M
Sbjct: 827 ---IQGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELEQLVREHM 883

Query: 652 TSNPSWAKGLPLKAEGYESKRY 673
            +   +   +PL+      + +
Sbjct: 884 GNA--YPLDVPLEVSVGYGRSW 903


>gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 905

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/646 (14%), Positives = 173/646 (26%), Gaps = 135/646 (20%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +D        +      + +     V HN+     V        +       T + A  
Sbjct: 374 WFDTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITM-DTALAAYL 431

Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   AL A+                 +A                    +    F  
Sbjct: 432 VKPGRRSFALDALSVEYLHRELVPAAADGQLAFGTDEHAEADALMAQARAVLDLGDAFTA 491

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +  V  T  +          E     L   +   G   D A   ++  +      +  
Sbjct: 492 RLEE-VGATELLH-------DMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAV 543

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKL-TPQAIQ 275
           +E  +       +    ++L+   F E  L     T+T        L+        +   
Sbjct: 544 KEAHATVGH-EFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELPV 602

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +       +R     +  L++ + +DGR+  T     A+ TGR S      QN+P  +  
Sbjct: 603 IMLRHREQARLRST-VEGLIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRTDE 660

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394
                                       +R   +  EG + L+ AD + IE RV+A ++ 
Sbjct: 661 GRA-------------------------IRRGFVVGEGFESLMTADYSQIELRVMAHLSQ 695

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AF +GEDL+ T  ++ F VA ++V  + R   K M   L               
Sbjct: 696 DEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGL--------------A 741

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            GL+    +  +   +                                   +   + ++ 
Sbjct: 742 YGLSAFGLSQQLNIEAG------------------------------EARALMDTYFERF 771

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +    +      T                                 GR     D+ 
Sbjct: 772 GGVRDYLRHVVDEARAT--------------------------GYTATMLGRRRYLPDLN 805

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
           ++            R            +Q  + DI+   M+   +A         ++L V
Sbjct: 806 SDN---RQRREAAERMALNAP------IQGTAADIVKIAMLRVDRALREAGLSSRLLLQV 856

Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           HDEIV E    +      +    M+S    +   PL         +
Sbjct: 857 HDEIVLEISPGERDEVETIVRREMSSAVELSA--PLDVSVGVGADW 900


>gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 884

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/646 (14%), Positives = 173/646 (26%), Gaps = 135/646 (20%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +D        +      + +     V HN+     V        +       T + A  
Sbjct: 353 WFDTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITM-DTALAAYL 410

Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   AL A+                 +A                    +    F  
Sbjct: 411 VKPGRRSFALDALSVEYLHRELVPAAADGQLAFGTDEHAEADALMAQARAVLDLGDAFTA 470

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             +  V  T  +          E     L   +   G   D A   ++  +      +  
Sbjct: 471 RLEE-VGATELLH-------DMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAV 522

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKL-TPQAIQ 275
           +E  +       +    ++L+   F E  L     T+T        L+        +   
Sbjct: 523 KEAHATVGH-EFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELPV 581

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +       +R     +  L++ + +DGR+  T     A+ TGR S      QN+P  +  
Sbjct: 582 IMLRHREQARLRST-VEGLIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRTDE 639

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394
                                       +R   +  EG + L+ AD + IE RV+A ++ 
Sbjct: 640 GRA-------------------------IRRGFVVGEGFESLMTADYSQIELRVMAHLSQ 674

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AF +GEDL+ T  ++ F VA ++V  + R   K M   L               
Sbjct: 675 DEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGL--------------A 720

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            GL+    +  +   +                                   +   + ++ 
Sbjct: 721 YGLSAFGLSQQLNIEAG------------------------------EARALMDTYFERF 750

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +    +      T                                 GR     D+ 
Sbjct: 751 GGVRDYLRHVVDEARAT--------------------------GYTATMLGRRRYLPDLN 784

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
           ++            R            +Q  + DI+   M+   +A         ++L V
Sbjct: 785 SDN---RQRREAAERMALNAP------IQGTAADIVKIAMLRVDRALREAGLSSRLLLQV 835

Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           HDEIV E    +      +    M+S    +   PL         +
Sbjct: 836 HDEIVLEISPGERDEVETIVRREMSSAVELSA--PLDVSVGVGADW 879


>gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 867

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/533 (14%), Positives = 160/533 (30%), Gaps = 132/533 (24%)

Query: 165 VTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
             +  +I+  L+    ++Q           L  +   +   G  VD    H  ++ +  +
Sbjct: 439 AVLLEKIYPVLKERLEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREISAQ 498

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKK 268
              L  E+  L      +    ++L   LF    L     T+      +T   VL + + 
Sbjct: 499 IAHLTAEIYDL-AKGEFNINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAEVLEAMRF 557

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P   ++ + R   ++     L+++   ++   +   T      + TGR S      QN
Sbjct: 558 DHPILEKILSYRF-WTKLQSTYLDSMEGLISPRTKRIHTSFNQTVTATGRLSSSEPNLQN 616

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEAR 387
           +P  +                              +R+    S+G   L+ AD + IE R
Sbjct: 617 IPVRTEEGR-------------------------QIRALFEPSDGYDALMSADYSQIELR 651

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++ ++  L+AF  G+D++  T +  F V    VT D R   K +            
Sbjct: 652 ILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNF---------- 701

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    +  +                                         
Sbjct: 702 ----GIVYGISDYGLSKDLHI------------------------------SRQEAADYI 727

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            ++  K S +    + + +   +                          +  +    GR 
Sbjct: 728 ASYFAKCSGIKRFIDGVVEKAHK--------------------------DGFVTTIFGRR 761

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
                + ++     T      R            +Q  + DI+   M+   +A       
Sbjct: 762 RDLPAIKSSNYNQRTL---AERMAMNTP------IQGSAADIIKLAMIKTHRALQEGGFK 812

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
             I+L VHDE+V E    ++   + L    M +       +PL  + +  + +
Sbjct: 813 SRILLQVHDELVLEIMQNEKEQVAELVRDAMENIVQ--LSVPLSVDIHTGENW 863


>gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
 gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185]
          Length = 866

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/533 (14%), Positives = 160/533 (30%), Gaps = 132/533 (24%)

Query: 165 VTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
             +  +I+  L+    ++Q           L  +   +   G  VD    H  ++ +  +
Sbjct: 438 AVLLEKIYPVLKERLEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREISAQ 497

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTCQRVLSSNKK 268
              L  E+  L      +    ++L   LF    L     T+      +T   VL + + 
Sbjct: 498 IAHLTAEIYDL-AKGEFNINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAEVLEAMRF 556

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P   ++ + R   ++     L+++   ++   +   T      + TGR S      QN
Sbjct: 557 DHPILEKILSYRF-WTKLQSTYLDSMEGLISPRTKRIHTSFNQTVTATGRLSSSEPNLQN 615

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEAR 387
           +P  +                              +R+    S+G   L+ AD + IE R
Sbjct: 616 IPVRTEEGR-------------------------QIRALFEPSDGYDALMSADYSQIELR 650

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA ++ ++  L+AF  G+D++  T +  F V    VT D R   K +            
Sbjct: 651 ILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNF---------- 700

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    +  +                                         
Sbjct: 701 ----GIVYGISDYGLSKDLHI------------------------------SRQEAADYI 726

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            ++  K S +    + + +   +                          +  +    GR 
Sbjct: 727 ASYFAKCSGIKRFIDGVVEKAHK--------------------------DGFVTTIFGRR 760

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
                + ++     T      R            +Q  + DI+   M+   +A       
Sbjct: 761 RDLPAIKSSNYNQRTL---AERMAMNTP------IQGSAADIIKLAMIKTHRALQEGGFK 811

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
             I+L VHDE+V E    ++   + L    M +       +PL  + +  + +
Sbjct: 812 SRILLQVHDELVLEIMQNEKEQVAELVRDAMENIVQ--LSVPLSVDIHTGENW 862


>gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 887

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 85/592 (14%), Positives = 167/592 (28%), Gaps = 131/592 (22%)

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
             T +             + +  +   QK     +           +   +         
Sbjct: 410 HDTAIAGYLLRPGQRTYEIADVYQRHLQKQLPQSD----GQLSLLDDSPSEPLLIEAMAV 465

Query: 154 WRLFGEYCKGDVTVT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             L          +   E++         E  L  +   + D G  VD            
Sbjct: 466 LELVPRLTDELSDIESLELYT------DLEIPLITILAAMEDTGIAVDTHTLEEQLDGFV 519

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK- 268
               + ++    L      +    ++L+  LF    L     T+   +T  + + +  K 
Sbjct: 520 DLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEALAKK 579

Query: 269 -LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P    +  +R   S+     L  L+ ++  DGR+  T +   A  TGR S      Q
Sbjct: 580 TDHPFLQHLLAHR-EYSKMKST-LEGLIRSVGGDGRIHTTFKQTVA-STGRLSSTDPNLQ 636

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEA 386
           N+P  + + ++                         +RS  +  EG   L+ AD + IE 
Sbjct: 637 NIPVRTDAGKK-------------------------IRSAFVVGEGFETLLTADYSQIEM 671

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RV+A ++ +   ++A++ GEDL+    ++ F+V   +VT + R   K M   L Y     
Sbjct: 672 RVMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAY----- 726

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    GL+    A  +                                     + +
Sbjct: 727 ---------GLSSYGLAAQLDI------------------------------PQGEAKSI 747

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             ++ ++   V      +     +                          +       GR
Sbjct: 748 MDSYFERFGGVKNYLRSVVDEARK--------------------------DGYTSTLFGR 781

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622
                ++ +             R            +Q  + DI+   M+   +       
Sbjct: 782 RRYLPELTSTN---RIARENAERAALNAP------IQGTAADIIKVAMVRVNRRLDSLKS 832

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E    +    S +    M    S    +PL+        +
Sbjct: 833 RVLLQVHDELVLEVAPGELEEVSRIVSEEMDGAIS--LRVPLEVSTGHGTNW 882


>gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7]
 gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I
 gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7]
          Length = 875

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 86/632 (13%), Positives = 184/632 (29%), Gaps = 146/632 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++   L +  +  + ++      +LK   N    I       ++  +     + K + +
Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK 431

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  K    + +I    K   +     +      +  + F  Y   D          
Sbjct: 432 ----EVLKETWIENIIIESAKIVINFIALYKQTIWELKDNKTFRLYSNID---------- 477

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                     + ++   +   G  VD      L+     E  KL++E+ +L+     +  
Sbjct: 478 --------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTK-FNIG 528

Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             ++L   LF +  L          + +T   +L    +       +     + ++    
Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             ++L + +++      T     ++ TGR S      QN+P  S                
Sbjct: 589 YTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGN------------ 636

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R   IA EG KL+ AD + IE R+L+ +A      +AF   +D++
Sbjct: 637 -------------QIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T  + FN+   ++T + R   K +                    G++           
Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 718

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                  A +            K +  ++  V E   +      
Sbjct: 719 -------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA- 758

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                                     +N  +    GR      + + +       +   R
Sbjct: 759 -------------------------SSNGYVTNCFGRKCFVPLIHDKK-----LKQFAER 788

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+N        K    +VL +HDE++ E P  +   
Sbjct: 789 AAINAP------IQGTNTDIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEI 842

Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
              ++  +M ++ + A  +P+  E      + 
Sbjct: 843 ITPIIKKIMENSTNMA--VPIITEIRAGNNWM 872


>gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21]
 gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21]
          Length = 873

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 94/649 (14%), Positives = 183/649 (28%), Gaps = 156/649 (24%)

Query: 39  DHPVELWD--CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           DH V +WD   ++D  M       L +  +  +  N   E         + +        
Sbjct: 363 DHKVYVWDKALLNDANMLA----LLCDGAIKKIVPNPK-ELYKFMQGKGVSLQ-GVIGDP 416

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            + A           V              K L   +    +        +        L
Sbjct: 417 SLAAYLYEPGETHYDV--------------KSLAETYL-PASCGGTAQDVEALMPVLEGL 461

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
             E                E     E  L  +   +   G  +D  +   + + +  +  
Sbjct: 462 MAE------------RGLTELYRDIELPLTKVLANMEVNGITLDKGMLDEVTKSMTKQVA 509

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQA 273
            L+Q+ +        +    ++L   LF + GL +   T++   T   VL   +   P  
Sbjct: 510 DLEQKAKEEAG-EDFNVNSPKQLGVILFEKLGLPIIKKTKSGYSTDVSVLEQLQGEHPII 568

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +   R   S+     L  L   +N + GR+      + A+ TGR S      QN+P  
Sbjct: 569 ETIMEYR-TLSKLLSTYLVALHPLINPNTGRIHTHFNQM-ATVTGRLSSTDPNLQNIPTR 626

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAW 391
           +   +                          +R   +  +G   L+  D + +E RV+A 
Sbjct: 627 TEVGK-------------------------QMRRMFVPGKGYDLLMSCDYSQVELRVMAS 661

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +AG++  + AF  G+D++  T +  F V    VT   R+  K +   +            
Sbjct: 662 IAGDERLIDAFRHGQDIHSRTASEIFGVPIEDVTPFMRSKAKTVNFGII----------- 710

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               G++                                    +     +   +   ++ 
Sbjct: 711 ---YGISDFGL------------------------------GRQLGVPRSEAAQYIDSYF 737

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            +++ V E      +   +                             +    GR     
Sbjct: 738 ARYTGVKEYMEGEKKKARE--------------------------MGYVETLFGRRRYLP 771

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
           D+               R            +Q  + DI+   M++  K          ++
Sbjct: 772 DIHAKNF---NRRSFAERTAINTP------IQGTAADIIKIAMLHVAKELKEAGVKSRVL 822

Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDE+V E  + ++   S +    M    +    +PL A+    K +
Sbjct: 823 LQVHDELVLEVVEEEKDKVSAIVKNAMERAVT--LKVPLVADIAFGKTW 869


>gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
 gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B]
          Length = 910

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 95/624 (15%), Positives = 176/624 (28%), Gaps = 134/624 (21%)

Query: 67  TIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQK 122
             V H++     +L  A     +       T + A           L  +         +
Sbjct: 399 PKVLHDAK--GPILALAARGWTLRGLA-SDTALAAYLVLPGQRSFDLADLAVRYLRRELR 455

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            E G     +       +         H  A     E    D  V          L   E
Sbjct: 456 AEAGSAGDGQLSFEMAGDEATAAAAGVHARAVLDLAE--VLDAEVAAR--GGARLLRDVE 511

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +   G  VDV     L+  +       +Q    +      +    ++L+  
Sbjct: 512 LPLIDVLAAMERAGIAVDVDTLVDLSAELAAHVKATEQAAYQVVG-REFNLGSPKQLQQI 570

Query: 243 LFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           LF E  L      +T   T    L +       P    +  +R   SR     +++L+  
Sbjct: 571 LFEELRLPKTKRIKTGYTTDAEALQNLLAQTGHPLLEHLLRHR-DVSRLKAT-VDSLIPM 628

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           ++++GR+  T   + A+ TGR S      QN+P  +                        
Sbjct: 629 VDAEGRIHTTFNQMVAA-TGRLSSQDPNLQNIPIRTAEGRR------------------- 668

Query: 358 QIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R   +  +G + L+ AD + IE R++A ++ +Q  ++AF +G D +  T A  
Sbjct: 669 ------IRQAFVVGKGYEALLTADYSQIEMRIMAHLSQDQALIEAFRSGFDFHAATAASV 722

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V P QV  + R   K M                    GL+    +             
Sbjct: 723 FGVRPEQVDAEMRRRVKAMNY--------------GLAYGLSAYGLSQQ----------- 757

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                                        + + + ++   V +    +    E+   +G 
Sbjct: 758 -------------------LGITPDEARVLMEEYFRRFGGVRDYLRTV---VERARRDGY 795

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                       GR     D+ ++            R       
Sbjct: 796 TETLL-----------------------GRRRYLPDLTSDN---RQRREMAERMALNAP- 828

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-H 649
                +Q  + DI+   M+   +A         ++L VHDE+V E    +  +   +   
Sbjct: 829 -----IQGSAADIIKVAMLGVDRALRAAGAKSRLLLQVHDELVLEVAPGERADVEEIVRR 883

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
            M         +PL+      + +
Sbjct: 884 EMGHAYE--LSVPLEVSVGVGRTW 905


>gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f]
 gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f]
          Length = 891

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 91/631 (14%), Positives = 176/631 (27%), Gaps = 130/631 (20%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115
           L   L + D     H+       L       +       T + A        +       
Sbjct: 372 LGAWLADPDRAKAGHDLKGPMLALAEA-GFTLA-GVTSDTALAAYLALPGQRSFDLADLT 429

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L+   ++++   E   +           D  + +   A          D  + R      
Sbjct: 430 LRYLHRELKSDTETNGQLTL--DGSGEADEAEADAIRARAALELAAALDGDLERR--SAA 485

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
             L   E  L ++   +   G   D      L +    E   +  +   L      +   
Sbjct: 486 RLLREMELPLVHVLARMERAGIAADEEHLTELQKHYSAEVADVAAQAHGLVG-RSFNLGS 544

Query: 236 LEKLKTWLFLETGLHLEDLTET---TCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLK 290
            ++L+  LF E  L      +T   T    L+        P    + ++R   +R     
Sbjct: 545 PKQLQQILFDELALPKTKKIKTGYTTDADALAWLATQSDHPLIPVLLHHR-DVARLK-TV 602

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++L+  ++  GR+  T   + A+ TGR S      QN+P  +                 
Sbjct: 603 VDSLIPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNIPIRTPQGR------------- 648

Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   +   G   L+ AD + IE R++A ++G+   ++AF +GEDL+
Sbjct: 649 ------------QIRRAFVVGPGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLH 696

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
               A++F++  ++V  + R   K M                    GL+    A      
Sbjct: 697 TFVAAQAFDLPVSEVDPELRRRIKAMSYG--------------LAYGLSAFGLAGQ---- 738

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                                  A+  +   V +    +     
Sbjct: 739 --------------------------LGIAPDEAREHMDAYFARFGGVRDFLRGVVDQAR 772

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +                          +       GR     D+ ++ +          R
Sbjct: 773 R--------------------------DGYTETIMGRRRYLPDLTSDNTQRRQM---AER 803

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+   +A         ++L VHDE+V E    +   
Sbjct: 804 MALNAP------IQGSAADIIKIAMLGVDRALRSRDLRSRLLLQVHDELVLEIAPGERVE 857

Query: 644 ASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
              L    M +       +PL+        +
Sbjct: 858 VEALVRAEMGAAYE--MSVPLEVSVGSGLTW 886


>gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773]
          Length = 893

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/654 (14%), Positives = 191/654 (29%), Gaps = 125/654 (19%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
             F   +  V  +    D  + Q   L+  +EN  +     N   +  + K    L +  
Sbjct: 348 IGFVIGNPTVGYY-GSRDLSLLQTPELRAVIENPAIIKNVFNVKAQLVMFKR-LGLALQG 405

Query: 91  HRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD--R 145
                 L+ A      +    L  + +   +  Q  EE     A+F   E  + +     
Sbjct: 406 VD-FDFLLAAYLLDTTANDNELSTLAQRFDVYVQPDEEIYGKGAKFAVPEDVDRVLMHLG 464

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
            K +              D      ++         E  L ++   +  RG  ++ A   
Sbjct: 465 QKADALMQLETPTLAALTDHEQMH-LYT------DIELPLAHVLADMEYRGIAINQARLA 517

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
            +   +      ++  +  L  G   +    ++L   LF + GL +   T+   +T   V
Sbjct: 518 EIGTDLTGRIQAIEDAIY-LEAGEKFNINSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDV 576

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L       P    V   R   ++     ++ L+  +N       T      ++TGR S  
Sbjct: 577 LEKLAHQAPIVDYVLQYRQ-LAKLKSTYVDGLLAVVNQKDSKIHTRFLQTLTQTGRLSSV 635

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADL 381
               QN+P  S                              +R+  + S    ++  AD 
Sbjct: 636 DPNLQNIPMRSDEGR-------------------------QIRTAFVPSQPDWQIFGADY 670

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TKDQRAIGKVMELALG 440
           + IE RVLA M G++   +AF  GED++  T    F +         QR   K +   + 
Sbjct: 671 SQIELRVLAHMTGDKNMQQAFLNGEDIHAETARAVFGLDSQAPVNAVQRRTAKAVNFGIV 730

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y               L ++        ++  +E+     +   ++         +    
Sbjct: 731 YGIS-----DFGLANNLGISRAQAKQFIDTYFKEFPKVHEWMENIKAVAHAQGYVETIAK 785

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
               R       K+  +        +    +   G A    K   + +            
Sbjct: 786 R--RRYLPDIHAKNFNLRSF---AERTAMNSPIQGSAADIIKIAMIKV------------ 828

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                                               L EN +QA                
Sbjct: 829 ---------------------------------ADALAENNMQA---------------- 839

Query: 621 GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              ++L VHDE++ E P ++     +++  +M S  +    +P++ E +  K +
Sbjct: 840 --RMLLQVHDELIFEAPTSEIPALTALVTKVMDSAVT--LDVPMQVESHYGKTW 889


>gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
 gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728]
          Length = 908

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 109/667 (16%), Positives = 190/667 (28%), Gaps = 142/667 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNL 86
             +   A   D H   L     D      L   L +   T   H++  F           
Sbjct: 358 GRLSGLALASDGHHAWLDPSALDEADENALAAWLADPTATKAVHDAKRFGLAC--RSHGW 415

Query: 87  DIPIHRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           ++       T + A          +L+A+             G+EL  R    +      
Sbjct: 416 NLD-GVTSDTALAAYLVRPDLKSDSLEALATRY--------LGRELNPRTAAAQPTLDGL 466

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLS--SKEQELWYLDQTINDRGYCV 199
           + +  N   A          D+      E+            E  +  +   +   G   
Sbjct: 467 ETDGENEAAANLAALAAATRDLAEVLDGELASHNAAGLLADMELPVMTVLTEMEAIGITA 526

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257
           DVA    L      E  +      +       + R  ++L+  LF + G+     T+T  
Sbjct: 527 DVAHLTGLESTFAAEAAEAVAAAHAAVDQT-FNLRSPKQLQEILFDKLGMPKTKRTKTGY 585

Query: 258 -TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
            T    L+        P    +  +R R        ++ L+  +  DGR+  T Q   A+
Sbjct: 586 TTDADSLAGLYATTQHPVLEAILRHRDREKLKQT--VSGLLAEVAEDGRIHTTYQQNVAA 643

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S      QN+P  + +                            +R   I +EG 
Sbjct: 644 -TGRLSSKDPNLQNIPVRTDAGRR-------------------------IRQGFIVTEGF 677

Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L+  D + IE R++A ++G++  ++AF++GEDL+ T  AR FNV P  V  +QR   K
Sbjct: 678 ETLMTCDYSQIEMRIMAHLSGDEGLIEAFKSGEDLHTTVAARVFNVEPGSVDAEQRRRIK 737

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            M                    GL+    +                              
Sbjct: 738 AMSYG--------------LAYGLSAYGLSQQ---------------------------- 755

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                       + + +  +   V +    + +   +                       
Sbjct: 756 --LGITPEEARGLMEEYFTRFGGVRDYLRTVVEEARKA---------------------- 791

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                      GR     D+ ++            R            +Q  + DI+   
Sbjct: 792 ----GYTETMFGRRRYLPDLNSDN---RQRRDMAERAALNAP------IQGSAADIMKIA 838

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAE 666
           M+N  +A         ++L VHDE+V E    +      L    M S       +PL+  
Sbjct: 839 MLNVHRALVAAKVKSRVLLQVHDELVLEIAPGEAPEVEKLVRAEMASAAELM--VPLEVS 896

Query: 667 GYESKRY 673
                 +
Sbjct: 897 VGTGGDW 903


>gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
 gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817]
          Length = 905

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/638 (13%), Positives = 186/638 (29%), Gaps = 145/638 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + ++E  +N +  IV +N      +L     + +   +    +++A         + V  
Sbjct: 390 KEIQEFFDNYNGEIVTYNLK---NILNR--GISVKNCKLD--MMIAYHLISSQTKENV-- 440

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +      E      +F K +                   +G+Y         E +  
Sbjct: 441 ELPIEHLTGIELDNYADKFGKEKPENISAK-----------EYGKYLCQRTMGLLECYDI 489

Query: 175 LEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L+                  L  +  ++  +G  +D        + +     KL +++  
Sbjct: 490 LKEELEDRNLMKVLNEIEMPLIEILSSMEIKGIKIDPEYFSNYEKELGDLIEKLQEKIYE 549

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
                  +    ++L   LF +  L     T+   +T + VL   K    +  +      
Sbjct: 550 EAG-EEFNINSPKQLAEILFFKLNLPPVKKTKTGLSTDEEVLEKLKVDGAEIAKAILEYR 608

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           + ++     ++ + +  +   R+  T   +G + TGR S      QN+P  +    +   
Sbjct: 609 KLAKLKNTYVDAIPKLRDEKDRVHTTFNQIGTT-TGRLSSSDPNLQNIPVKTDEGIK--- 664

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R   +A +   L+  D + IE RVLA ++G++   +A
Sbjct: 665 ----------------------IRQGFVAEKNSVLMGIDYSQIELRVLAQLSGDENLREA 702

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           ++   DL+  T  + F ++  +                                      
Sbjct: 703 YQNSMDLHSLTARKIFELSDEE-------------------------------------- 724

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                + +          NF     +     A E              +  ++ +V    
Sbjct: 725 -----EVSREERIIAKTINFSIIYGKTAFGLAKELGISQKEASEYIDRYFNQYPKVKGFE 779

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
            E+    E T ++G                             GR  +   + +      
Sbjct: 780 KEI---VEFTEKHGYTETF-----------------------FGRRRLIDGINSKN---K 810

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----AGYDIVLTVHDEIVCET 636
               Q  R          +++Q  + +I+ + M+   K      G  ++L VHDE++ E 
Sbjct: 811 NIKSQAERMA------VNSVIQGTAAEIIKKVMIEIYKYIKDRDGISLLLQVHDELIFEI 864

Query: 637 PDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                      +  +M  +  +   +PL+        +
Sbjct: 865 EKEKLEMYREDIEKIMRESVKF-DSVPLEINTNIGVNW 901


>gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
 gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3]
          Length = 922

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/637 (15%), Positives = 175/637 (27%), Gaps = 155/637 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLK------ACFNLDIPIHRWICTLVLARSNGLPSALK 110
           L   L++    +VA     +   L           L     R     + A       +  
Sbjct: 419 LCAWLQSARRLVVA-----DLKALLTAAPCWRNLPLGETPPRCFDLGLAAYLLNPEES-- 471

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
                          G  L                                  ++  T E
Sbjct: 472 ----DYGWPRLAARWGAALKPEGGGPARLA------LAMAEALEDRLVRDGLRELYNTLE 521

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +             L  +   +  RG  +D A        V  E  +L  E+ +      
Sbjct: 522 L------------PLTPVLAEMEGRGVAIDAAAFQAFLSDVQHELDRLTAEVYAAAGTT- 568

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            + R  ++L   LF    L     T+    +T Q+ L            +   R +  + 
Sbjct: 569 FNIRSAQQLGDVLFKTLNLPSPRKTKGGQASTSQQTLEKLAGRHAVVDSILQFR-KLEKM 627

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
               L+ L   ++  GR+  T     A+ TGR S      QN+P                
Sbjct: 628 RSTYLDPLPRLVDGQGRIHTTFNQ-KATATGRLSSSNPNLQNIPVRGP------------ 674

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                        +   +R+C IA  G+ LV AD + +E RVLA M+ +   L AF  GE
Sbjct: 675 -------------LGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALLDAFRQGE 721

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++  T A  +++   +V+ DQR   K +                    G+         
Sbjct: 722 DIHARTAALIYDLQAGEVSPDQRRNAKTINF--------------GLIYGMG-------- 759

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                   +   E        +     + ++ + +   +  +  
Sbjct: 760 ----------------------AQKLGQELKISTAEAKEFITRYFERLTGLKAFYENVEA 797

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
             +     G                             GR  +  D+ +           
Sbjct: 798 TAK---RQGYVTTLG-----------------------GRRRLLPDILSAN---GQAFAL 828

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDT- 639
             R+          ++Q  + DI+   M+         +    ++L VHDE++ ETP+  
Sbjct: 829 ARRQAI------NTVIQGSAADIIKLAMLAVAHDAELRRMDARLLLQVHDELLLETPEAT 882

Query: 640 DEFNASMLYHLMTSNPSW--AKGLPLKAEGYESKRYR 674
            E   + +  LM+S         +PL  +      + 
Sbjct: 883 AEAAGARVAALMSSVAPGGETLSVPLVVDWGVGHDWG 919


>gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2]
 gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis]
 gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2]
          Length = 922

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/658 (13%), Positives = 189/658 (28%), Gaps = 151/658 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++   L +  +  + ++      +LK        I       ++  +     + K + E
Sbjct: 375 DIIFNLLTDKSIRKITYSLK---PLLKFYAEQSHEITAIEDLELMQYALSAGLSQKNLFE 431

Query: 115 -------------ALKLSSQKMEEGKELIARFCKGET-------------HECLYDRNKP 148
                        A +   +   E     A     E                        
Sbjct: 432 EALKEDNRHLSKPAYREEFKGDTEALATAAYKSVREDASTGSTSKLPLETKFGKMSNVIN 491

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                   F    K ++ +  +  K     S+ +  + ++   +   G  VD    + L+
Sbjct: 492 ESARIVAEFTSLYKQNI-LELKDNKAFRLYSNIDLPICFILDKMEKIGIKVDANYLNQLS 550

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVL 263
                E  KL++E+ +L+     +    ++L   LF +  L          + +T   +L
Sbjct: 551 AEFGAEILKLEEEIFALSGTK-FNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEIL 609

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
               +       +     + ++      ++L + +++      T     ++ TGR S   
Sbjct: 610 EKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQE 669

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  S    +                         +R   IA EG KL+ AD + 
Sbjct: 670 PNLQNVPIRSSEGNK-------------------------IRQAFIAEEGYKLISADYSQ 704

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+L+ +A      +AF   +D++  T  + FN+   ++T + R   K +        
Sbjct: 705 IELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN------- 757

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++                                  A +        
Sbjct: 758 -------FGIIYGIS------------------------------AFGLAKQLNVSNGEA 780

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
               K +  ++  V E   +                                +N  ++  
Sbjct: 781 SEYIKKYFAEYKGVQEYMEQTKAFA--------------------------SSNGYVINF 814

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
            GR      + + +       +   R            +Q  + DI+   M+N  +    
Sbjct: 815 FGRKCFVPLIHDKK-----LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIEK 863

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                 +VL +HDE++ E P+ +      ++  +M +  S    +P+  E      + 
Sbjct: 864 NNLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIMEN--STNMDVPIITEIRVGNNWM 919


>gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 656

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/715 (13%), Positives = 191/715 (26%), Gaps = 154/715 (21%)

Query: 4   LFIDFETRSPIDLTK-CGICKYAEDVCVILFAFGFDDHPVELWDCVHD--------PVMP 54
           +  DFET    +  K       A    +   +F   +         H           + 
Sbjct: 23  VAFDFETAPDNEYRKEPKAALDAHKAHITGVSFSVTEGDAIYVPLAHRVGVNCEDPDALW 82

Query: 55  QVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
             LKE   E+ DV  +AHN  FE   L     + +       T+  A+       +K+  
Sbjct: 83  AFLKESIFESHDVICIAHNLSFEAMFLYKQ-GIVVQ-EPCYDTIAAAQL-----TMKSKW 135

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E   L    ++     +              R+             Y   D   T  ++ 
Sbjct: 136 EFRGLHDSGLKLLATSLFGADMPSFSSVTDGRHFDEMNPQEYETVRYACADSDYTLCLYY 195

Query: 174 RLEPLSSKEQELWYLDQT------------INDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +      +      +               +   G  VD             +   L  E
Sbjct: 196 KFNNWFDRFLPAHRIITEQLESPTAVMVGCMKYNGIPVDRKAMLEKQTEAVAKVDALKAE 255

Query: 222 LESLTYGLVSSSR-CLEKLKTWLFLETGLHLEDLTETTCQ-------RVLSSNKKLT-PQ 272
           +  LT G+   +       K +L+ + GL +   TE   +       ++L        P+
Sbjct: 256 INELTGGVNIGANASTSAFKQYLYKDLGLPVLKKTEKNQEAADDAAMQLLEEYCAQHRPE 315

Query: 273 AIQV---FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            +++        +  +     ++  ++ +NS             + TGRW+      QN 
Sbjct: 316 LVRLFQAVQEYRKWGKLKSTYIDGYLDHVNSATGRIHPDLMPLGTDTGRWAARNPNMQNA 375

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           PR +                              +R+ ++A  G+ ++  D + IE RV 
Sbjct: 376 PRKTND-------------------------PIGIRNFIVAPPGQIIMSLDFSQIELRVG 410

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-------QVTKDQRAIGKVMELALGYQ 442
           A+   +   L+ + +G D++  T +  F V             K+ R I K     + Y 
Sbjct: 411 AFYCRDPKMLETYRSGGDIHAQTTSVVFGVPFEVAVDKNAPNYKEHRTIAKNCNFGVFYG 470

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
              +  QK                                                    
Sbjct: 471 LFPRGLQKTLR--------------------------------------FKAGLDTSFER 492

Query: 503 CERVKKAWRQKHSRVSELWNELH-QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
           C+ +    +  +S ++    E   +A +                                
Sbjct: 493 CKEIIDNLKSGYSGLTTWQEETKARAAKTC---------------------------YAE 525

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---- 617
              GR      + ++    ++   +               VQ  + DIL           
Sbjct: 526 TWMGRRRYLPHMLSSDWGKHSFAER---------CALNTPVQGTAADILKAACARIVAGF 576

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYES 670
             +     +L +HDE+V   P+     A   +   M   P     +P+ AE    
Sbjct: 577 PERPWLKPILQIHDELVFLLPEERLLEAQQFVKKCMEQQPYPDFDVPIVAEASAG 631


>gi|157265423|ref|YP_001467981.1| DNA polymerase I [Thermus phage P74-26]
 gi|156905318|gb|ABU96961.1| DNA polymerase I [Thermus phage P74-26]
          Length = 728

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 112/779 (14%), Positives = 213/779 (27%), Gaps = 202/779 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--------- 54
           + +D ET             Y  D  ++  A          +   H   +          
Sbjct: 25  VALDTETYGSNPFN-----LYLPDFRLVGVAIATSPTEAWYFPVDHQDFLLRYQPANLPR 79

Query: 55  QVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111
           + +++A LE     +V HN+ ++R VL    ++ +       T+V            LK 
Sbjct: 80  EAVRQAVLEALKRPVVYHNAAYDRRVLAVTLDIPLDQTYGDDTMVALHLVDENHPLGLKE 139

Query: 112 VGE------------------------------------ALKLSSQKMEEGKELIARFCK 135
             +                                      KL    ++  K+       
Sbjct: 140 WAKTLLGLEEVNADIEPPELTDEDQVEAVSKNGRRYKKKVHKLKPDWLQRLKDAFLAVHN 199

Query: 136 GETHECLYDRNK---------------------PNHREAWRLFGEYCKGDVTVTREIFKR 174
           G        +                               +   Y   D   T  +++ 
Sbjct: 200 GGVSYGALYKLLNRAFQQLKNRGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTLALWEH 259

Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +E       +L  L + I             RG  VD      + + +     +  QE +
Sbjct: 260 VEVFFELHPKLHTLYREIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEKAQEAQ 319

Query: 224 SLTYGLV--------SSSRCLEKLKTWLFLETGLHL--------EDLTETTCQRVLS--- 264
            L   L+        +     ++L T L+   G  +           ++T   ++L+   
Sbjct: 320 ELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKLLTLSP 379

Query: 265 SNKKLTPQAIQVFNNRMR---ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
            +KK  P A      +       +      ++++E ++  GRL      +G + +GR S 
Sbjct: 380 KDKKKAPLAKAFLEAKQAHEGLKKLLSTYTDSILEEVDPQGRLHTNFNTVG-TVSGRMSS 438

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QNLPR                       +   +    +R   +A  G   V AD 
Sbjct: 439 SNPNLQNLPR----------------LLPEEVAEKPYLQGIDIRKAFVADPGYIFVSADY 482

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-------QVTKDQRAIGKV 434
           A +E  V A ++G+         G DL+  T   +F V          +  KD R   KV
Sbjct: 483 ASMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQYKDYRQKAKV 542

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +  AL Y G      +         +            E +   + +   +     E   
Sbjct: 543 VNFALIYGGT-----EFTLIKNFGFSEEEAKQLIQGYFEAYPVVKTWMEEVYRELEEKGF 597

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +                 +  +      +              + +  R +P       
Sbjct: 598 VE-----------------YP-IYGYIKRMD-------------LPQALRKLPKDKWPLV 626

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
            NN     P  R   Y  + + +                       ++Q  S  ++ + +
Sbjct: 627 LNN----DPDARKQYYASLRSCQ---------------------NALIQGFSAFVVKDAI 661

Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           +   +A         +++ VHDEIV    +      + +    M        G+ LKAE
Sbjct: 662 VQMQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMEREV---NGVLLKAE 717


>gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00]
 gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 868

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/603 (16%), Positives = 178/603 (29%), Gaps = 146/603 (24%)

Query: 76  ERTVLKACFNL--DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
           +   L     +   IP   WI   +                      ++     +L+AR+
Sbjct: 383 DLKSLLRTNGIWRTIPNTHWIDLGLATYLLDP--------------EERDYSWPKLVARW 428

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                               W       K     T ++ + ++   S E  L  +   + 
Sbjct: 429 GSVFGLSAGNPGLIALKV--WEQLRNKLK-----TAQLLELMD---SLELPLIPVLADME 478

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D          V      L + +     G   + R  ++L   LF +  L    
Sbjct: 479 AVGVVLDDQNLKIFLVEVQNSLDHLTETIYHEAGGS-FNIRSAQQLGDILFNQLELPAAK 537

Query: 254 LT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            T     +T Q VL       P    +   R +  +     L  L   +  DGR+  T  
Sbjct: 538 KTRGGQASTSQEVLEKLSGQHPIIDTILEYR-KLEKLRSTYLEPLPRLIGKDGRVHTTFN 596

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
            L A+ TGR S      QN+P                             +   +RSC  
Sbjct: 597 QL-ATATGRLSSSNPNLQNIPIRG-------------------------SLGQRMRSCFT 630

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           AS+G  L+ AD + +E RVLA  + +   L AF  G D++  T +  +  +  +VT D+R
Sbjct: 631 ASQGNLLISADYSQVELRVLAHYSKDPTLLTAFLEGADIHTRTASLLYEKSQEEVTADER 690

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +                    G+     A                          
Sbjct: 691 RNAKTINF--------------GLIYGMGPQKLAQ------------------------- 711

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                E        ++  + + +    + + ++++  + ++                   
Sbjct: 712 -----ELNTTLNEAKKFIQRYFEHLQAIKKFYDQVEHSAKE------------------- 747

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                     +   +GR  +  D+ +    L    R   R+          I+Q  + DI
Sbjct: 748 -------YGYVTTIAGRRRLLPDIHSENIQLQALAR---RQAI------NTIIQGSAADI 791

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLP 662
           +   M+         K    ++L VHDE+V E P+ +       +  LM++      G P
Sbjct: 792 IKIAMLTVHGDTTLAKMDAQLILQVHDELVVEAPEDNAKEVGKRIAMLMSNVTP--GGKP 849

Query: 663 LKA 665
           L  
Sbjct: 850 LIV 852


>gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3]
 gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3]
          Length = 945

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/630 (15%), Positives = 175/630 (27%), Gaps = 137/630 (21%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSA---L 109
              L   L + +    AH+      +L     LD+P+      T + A           L
Sbjct: 422 VAALGAWLADPNQPKAAHDVK--GPMLA-LTELDLPLAGVTSDTALAAYLALPGQRSFDL 478

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC-KGDVTVT 168
             +               + +    +                   R   E     D  + 
Sbjct: 479 ADLVARYLHRD----LSADPVPGGQQLTLDGSGEADQAHADAVRARACLELADALDADLE 534

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           R     L         L  +   +   G  VD      L +    E + +  +   +   
Sbjct: 535 RRSAATLLRDIE--LPLVTVLAGMERAGIAVDSEHLTELQKHYGGEVSAVAAQAHEIVGR 592

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNK--KLTPQAIQVFNNRMRA 283
              +    ++L+  LF E GL      +T   T    L+        P    +  +R   
Sbjct: 593 P-FNLGSPKQLQQILFDELGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHR-DV 650

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           +R     +++L+  ++  GR+  T     A+ TGR S      QN+P  +          
Sbjct: 651 ARLK-TVVDSLIPMIDDIGRIHTTFNQTIAA-TGRLSSADPNLQNIPIRTAEGR------ 702

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   +   G   L+ AD + IE R++A ++G++  ++AF
Sbjct: 703 -------------------QIRRAFVVGAGYETLLTADYSQIEMRIMAHLSGDEGLIEAF 743

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            +GEDL+    A +F +  ++V  + R   K M                    GL+    
Sbjct: 744 GSGEDLHTFVAAEAFGLPVSEVDPELRRRIKAMSY--------------GLAYGLSAFGL 789

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A                                             A+  +   V +   
Sbjct: 790 AGQ------------------------------LGIAPDEAREHMDAYFARFGGVRDFLR 819

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            + +   +                          +       GR     D+ ++ S    
Sbjct: 820 GVVERARK--------------------------DGYTETILGRRRYLPDLTSDNSQRRQ 853

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                 R            +Q  + DI+   M+   +A         ++L VHDE+V E 
Sbjct: 854 M---AERMALNAP------IQGSAADIIKIAMLGVDRALCAGGYASRLLLQVHDELVLEI 904

Query: 637 PDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
              +      L    MTS   +   +PL  
Sbjct: 905 APGEHDAVERLVRAEMTSA--YTMSVPLDV 932


>gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132]
 gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132]
          Length = 888

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/593 (16%), Positives = 175/593 (29%), Gaps = 135/593 (22%)

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
           +W    + A      S        L+ S             F  G        R    H 
Sbjct: 416 QWFDLSLAAYLLDPESRNYTWA-RLRQSM------------FQDGRPEFAEAARGLHPHS 462

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           +              V       L         L  +   +   G  +D A        V
Sbjct: 463 QGLAALAYMTGIRGQVEGAHLNTLMRELEI--PLIPVLVAMERAGISIDDAAFQAFLNDV 520

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNK 267
           + +  +L + +     G   + R  ++L   LF + G+     T     +T  +VL   +
Sbjct: 521 NAQLDELTRSIIG-YAGEEFNIRSSQQLAVVLFDQLGIKAGSKTSTGLRSTANQVLEKIR 579

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
              P    V   R    +     L  L + +  DGRL      L ++ TGR S      Q
Sbjct: 580 DQHPIVDAVLEFR-MLEKLRSTYLEPLPKMVGEDGRLHTHFNQL-STATGRLSSSQPNLQ 637

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P                                 +R+C  A+EG  L  AD + IE R
Sbjct: 638 NIPIRGVHGPR-------------------------MRACFNAAEGNMLAAADYSQIELR 672

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA  + +   + AF   ED++  T A   +   + VT D+R   K +   L        
Sbjct: 673 VLAHFSKDPELIDAFRHDEDIHARTAALIHDKDISAVTPDERRGAKTINFGL-------- 724

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G+ +   A  ++                                 T  +   
Sbjct: 725 ------IYGMGVQKLARELQIKQ------------------------------TEAQEFT 748

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + +  K + +   ++ +    +    +G                             GR 
Sbjct: 749 EKYFAKMATLKAYYDTV---VKDAETHGFVTTLA-----------------------GRR 782

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAG 621
            +  ++ +     N  + Q  R+          ++Q  + DI+   M+         + G
Sbjct: 783 RLLPELHSRN---NQLSAQARRQA------VNTVIQGSAADIIKMAMVQAHKDKRLRELG 833

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++L VHDE++ E P+ +   A   L  +M +       +PLK +    K +
Sbjct: 834 AQLILQVHDELIIEAPEANIKEAGGRLLEIMQTVAK--LDVPLKVDMGVGKNW 884


>gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
 gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233]
          Length = 902

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/640 (15%), Positives = 185/640 (28%), Gaps = 142/640 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPS---ALKAV 112
           L     +   T V H+     T + A      P+      T + A           L  +
Sbjct: 377 LAAWFADPTPTKVGHDLK---TAVNALTARGWPVGGVACDTALAAYLALPGQQTFDLGDL 433

Query: 113 GEALKL----SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
            +               G++L       E +E              R   +  +    + 
Sbjct: 434 VQRYLHRTLDPEHSTNAGQQL---SLIPEENEGAQTEQDSRDMVRARAIIDLAEA---LE 487

Query: 169 REIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           + +    +       E  +  +   +   G  VDV     L      E T   +   +  
Sbjct: 488 QHLDSLGQKSLLADIELPVMTVLGEMERDGIAVDVDYLDDLQSTFAAEVTSAAKACYAEI 547

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRM 281
              V +    ++L+  LF E G+     T+T   T    L S  +    P    +  +R 
Sbjct: 548 GREV-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALVSLHEQTGHPFLTHLLRHR- 605

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
             +R  V  +  L +++  DGR+  T Q   A+ TGR S      QN+P  +        
Sbjct: 606 DVTRLKVT-VEGLRKSVGDDGRIHTTFQQTVAA-TGRLSSTEPNLQNIPIRTDEGR---- 659

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                 +R   +       L+ AD + IE R++A ++ ++  ++
Sbjct: 660 ---------------------LIRRAFVPGPQADLLLTADYSQIEMRIMATLSEDEGLIE 698

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +GEDL+     ++F +   QVT + R   K M   L                GL+  
Sbjct: 699 AFRSGEDLHTFVAMKAFGLPAEQVTPELRRRIKAMSYGL--------------AYGLSAY 744

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +  +K                                    +   +A+  +   V + 
Sbjct: 745 GLSGQLKI------------------------------SVDEAKEQMEAYFSRFGGVRDY 774

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             +      +                          +       GR     D+ ++    
Sbjct: 775 LRDTVARARK--------------------------DGYTETIFGRRRYVPDLNSDN--- 805

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                   R            +Q  + D++   M+N  +          ++L VHDE+VC
Sbjct: 806 RQKRAMAERIALNAP------IQGSAADVIKVAMVNVQRRIRAEGLRSRMLLQVHDELVC 859

Query: 635 ETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           E    +      +L   M      A  +PL+        +
Sbjct: 860 EVVADELAVMTELLKQEMGGAYPLA--VPLEVSVGSGANW 897


>gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2]
          Length = 888

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/667 (15%), Positives = 188/667 (28%), Gaps = 144/667 (21%)

Query: 27  DVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
              V + A         + D           L  AL     T++ H+S  +         
Sbjct: 341 HGDVRILAVSGAPDEAWVVDLAEAGEADVSKLSSALR--SKTLILHSSKTQIKAW-RSLG 397

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           LD+       T + A              + +L        +         E+       
Sbjct: 398 LDVDDVA-GDTALAAYLLVPDQ------RSYELQQ---IALERAGIELSDAESDSGQLAL 447

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCV 199
           +     +  +  G      + V   +  +++  +        E  L  +   +   G  V
Sbjct: 448 DL-ESDQTAQTHGHRAAALLEVHDILAAKIDEANMSQVYRDIELPLVPVLARMELAGIAV 506

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-- 257
           D A    L      +     +         V +    ++L+T LF E  +     T+T  
Sbjct: 507 DEAGLSGLIDEFTKQANASAELAYEAIGHEV-NLGSPKQLQTVLFDELDMPKTKRTKTGY 565

Query: 258 -TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
            T    L+    K   P    +   R          +  L++ +  DGR+  T Q   A+
Sbjct: 566 TTDAEALAELFIKTEHPFLQHLLAYRDSTKLKQT--VVGLLKTVAEDGRIHTTYQQTVAA 623

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-- 372
            TGR S      QN+P  + S                            +R   IA    
Sbjct: 624 -TGRLSSLDPNLQNIPVRTESGRR-------------------------IREIFIADPHV 657

Query: 373 -GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
              +L+ AD + IE R++A ++G+   ++AF+ GEDL+    ++ F V   +V    R+ 
Sbjct: 658 DDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSK 717

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K M   L Y           S  GL+                                 
Sbjct: 718 VKAMSYGLVYG---------LSAYGLSRQLA----------------------------- 739

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                       + + + + ++   V +  +E+ +                         
Sbjct: 740 ------IGVDEAKNLMEQYFERFGAVKDYLDEIVEQAR---------------------- 771

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                N       GR      + ++R           R            +Q  + DI+ 
Sbjct: 772 ----ANGYTETIMGRRRYLPALHSDR---RQLRDMAERAALNAP------IQGSAADIMK 818

Query: 612 EGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
             M+  +         ++L VHDEI+ +    +  + + +    M S       +PL   
Sbjct: 819 IAMLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEEMGSAFE--LDVPLDVN 876

Query: 667 GYESKRY 673
                 +
Sbjct: 877 VGTGTSW 883


>gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3]
 gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3]
          Length = 869

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 190/656 (28%), Gaps = 129/656 (19%)

Query: 30  VILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
           ++  A   D   V   D  H    +   L++  +  D     +N   +   LK    + I
Sbjct: 328 LMGVALACD-EQVYYVDIEHAQDDVITPLRDFFKRKDTEFYGYNIKRDNHALKNA-GIHI 385

Query: 89  PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                    +        +  + + +     L     + GKE                  
Sbjct: 386 HNITL-DLALAEHLINGGAKISYQTLLVDHGLVESAGKYGKEWGQLSLPILKSPAKPAEY 444

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                       +          ++    +   + E  L  +  TI   G  +DV     
Sbjct: 445 FGEFVSHLPKIKKSLLE----ELKVKGLEDLFFNMEMPLEKVLFTIERNGMPLDVEDLQE 500

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
           L + +  E   L  ++ ++      + +  ++L   L+ + GL   D   +T   VL++ 
Sbjct: 501 LERTLSEELAILTDDIYTVAGTS-FNIKSPKQLSDVLYNKLGLTPIDKARSTKAEVLAAL 559

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFP 325
                   ++   R    +     +  L   ++    R+  T   +G + TGR +     
Sbjct: 560 LGEHEIVEKILAFR-AIEKLLSTYVKALPRQIDPHTSRIHPTFNQMG-TVTGRLACQDPN 617

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLVVADLAGI 384
            QN+P  S                              +R       +    + AD + I
Sbjct: 618 LQNIPIRSERGR-------------------------LLRKAFCDTRQNNYFLSADYSQI 652

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R LA ++ ++    AF + ED++  T ++ F+V   +VTK QR   K +         
Sbjct: 653 ELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTVN-------- 704

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G                              +     +       +  +
Sbjct: 705 ------FGIIYG------------------------------QQAYGLSKILKISVSEAQ 728

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           ++  A+  ++  V+   NE      +                          NL +    
Sbjct: 729 KLIDAYFDRYPAVARFINETINEACE--------------------------NLRVKTLL 762

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NAT 618
           GR          R   N T    +R  + G       +Q  + +++   M+         
Sbjct: 763 GR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLAAALEKR 812

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           K    ++L +HDE++ E P+ ++     L   +M S       +PL       K +
Sbjct: 813 KLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAM--ILSVPLVVNILIGKNW 866


>gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
 gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165]
          Length = 859

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/655 (14%), Positives = 187/655 (28%), Gaps = 162/655 (24%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRW 93
           +   D  V            + L   L++  VT+ V     F+   L   +   +    W
Sbjct: 347 YAVQDTTVY--PLSE-----EELVSLLDDPKVTLDV-----FDSAPL---YARAMAAGSW 391

Query: 94  -----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                    + A      ++   +                  A  C+             
Sbjct: 392 GSSIVWDGKLAAYLLDASASHYLLTTL-------ATSYHARSAFSCEEYPDAGFLADLFA 444

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
             +            D     +++      ++ E  L  +   +   G  VD        
Sbjct: 445 KMKAEITE----NGED-----DLY------NNIEFPLAQVLADMTRTGILVDREGIEAFG 489

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
             +  E  ++   +E        +    ++L T LF   GL     T+   +T    L  
Sbjct: 490 VQLRQELDQVLTRIEMEAGTSDFNPNSPKQLGTLLFDTMGLPHGKKTKNGWSTDAETLEK 549

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            + + P    +   R    +     +  L++ +  DGR+        A RTGR S     
Sbjct: 550 LRDI-PLVEDILQYR-ACQKLNSTYVEGLLKVIGEDGRIHTRFNQTEA-RTGRLSSDNPN 606

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +                          +   +R+  +A  G  LV AD + IE
Sbjct: 607 LQNIPIRTE-------------------------MGSKLRAYFVAKPGCVLVDADYSQIE 641

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA + G+    +AF +G D++ +T A+ +N+ P  VT   R+  K +   +      
Sbjct: 642 LRILAHVTGDAHMQEAFLSGADIHRSTAAKIYNIRPEDVTPRLRSSAKAINFGIM----- 696

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                                                    +     + +        E 
Sbjct: 697 ---------------------------------------YGKGAYSLSKDIGVSVKEAEA 717

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
             + +      +     +      Q                             +    G
Sbjct: 718 FLQTYLATFPNIDGYMEKTIADARQC--------------------------GYVSTLFG 751

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TK 619
           R     ++ +N   +  +  ++ R            +Q  + D++   M+         K
Sbjct: 752 RRRALPELNSNNHNIRASGERMAR---------NTPIQGTAADVIKLAMVRVWRRLRNEK 802

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
               ++LTVHDE++ E P+ +   A+ +    M     +A  +PL  + +  K +
Sbjct: 803 MESRLILTVHDELIVEAPEAEAEKAAQILREEMEGCVHYA--VPLSTDVHTGKNW 855


>gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 889

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/670 (15%), Positives = 181/670 (27%), Gaps = 147/670 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
             V               D    D    + L + L +     + H++      L+    +
Sbjct: 338 GDVTAVGLATAGDAAAYIDVTELDEDGEKALADWLADAARPKILHDAKGPMHALE-ARGM 396

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +       T + A           +             G+EL                 
Sbjct: 397 PLRGVTM-DTALAAYLVKPDQRSFDLA-----DLVVRHLGREL------KAEEHAGGQGL 444

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRG 196
                +   + G+          ++   L                E  L  +   +   G
Sbjct: 445 LDFDTDE-EVVGQDAMVRARAVLDLSVPLSEQLEATGGTELLRDIELPLVDILGAMERTG 503

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD      L    D +  +   +      G   +    ++L+T LF   GL     T+
Sbjct: 504 IAVDTDALSALEADFDAKVREAQLDAYEAIGGDEINLGSPKQLQTVLFETLGLPKTRRTK 563

Query: 257 T---TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T   T    L+    K   P    +  +R    R  V  +  L++++  D R+  T    
Sbjct: 564 TGYTTDADALTDLYAKTQHPFLEAMLRHRDAM-RLRVT-VEGLIKSVAEDQRIHTTYIQT 621

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
            A+ TGR S      QN+P  + +                            +R   +  
Sbjct: 622 IAA-TGRLSSTDPNLQNVPIRTEAGRR-------------------------IREVFVVG 655

Query: 372 EGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           +G + L+ AD + IE R++A ++G++  ++AF TGEDL+    AR F V P  VT + R+
Sbjct: 656 KGYESLMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRFVGARVFGVEPEDVTAEMRS 715

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K M   L                GL+    +                           
Sbjct: 716 KVKAMSYGL--------------AYGLSAFGLSKQ------------------------- 736

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                        + +   +  +   V +   E+      T                   
Sbjct: 737 -----LTISTGEAQGLMDEYFARFGGVRDYLREVVGEARAT------------------- 772

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                         GR     D+ ++            R            +Q  + DI+
Sbjct: 773 -------GYTATMLGRRRYLPDLTSDN---RQRREGAERMALNAP------IQGSAADII 816

Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPL 663
              M     A         ++L VHDE+V E  + +  +   L    M         +PL
Sbjct: 817 KLAMKGVDSALRESGAKSRMLLQVHDELVLEVAEGERDDVEALVRAEMGRAVE--MDVPL 874

Query: 664 KAEGYESKRY 673
                    +
Sbjct: 875 DVSVGLGHSW 884


>gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
 gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894]
          Length = 905

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/671 (16%), Positives = 190/671 (28%), Gaps = 147/671 (21%)

Query: 26  EDVCVILFAFGFDDHPVEL--WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
                   A       V     D   D    Q L   L +     V H +      L   
Sbjct: 354 AQGDAWGIALAAGGQGVAYDLADITPDDE--QALATWLADPTAPKVLHGAKTAWHALA-A 410

Query: 84  FNLDIPIHRWICTLVLARSNGL---PSALKAV-----GEALKLSSQKMEEGKELIARFCK 135
             + +       T + A           L  +     G  LK+      +G   +     
Sbjct: 411 RGIGLD-GVVFDTELAAYLCYPDQRGYDLGDLVARHLGRELKVGDD-DAQGALDLDLGGA 468

Query: 136 GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
           G        R       A  L G+                   +  E  L  +   +   
Sbjct: 469 GTQGVREATRAAAVADLAQALAGQLDDRGAASLL---------TDVELPLSAVLARVEAT 519

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G   D A    L +    +  +   E        V +    ++L+  LF E  +     T
Sbjct: 520 GIATDTAYLTGLERGFADQVAQAAAEAYDAIGHEV-NLGSPKQLQEVLFGELDMPKTKKT 578

Query: 256 ETT---CQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
           +T        L+        P    +  +R  A++  V  +  L+++++ DGR+  T Q 
Sbjct: 579 KTGYTTDAAALAELYAKTGHPFLEHLLAHR-DAAKLRVT-VEGLLKSVHPDGRIHTTFQQ 636

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             A+ TGR S      QN+P  + +                            +R     
Sbjct: 637 TIAA-TGRLSSTEPNLQNIPIRTEAGR-------------------------QIRRAFRV 670

Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            EG + L+ AD + IE R++A ++G++  ++AF TGEDL+    +R F V PA VT + R
Sbjct: 671 GEGFESLLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRYVGSRVFGVEPAGVTAEMR 730

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           +  K M   L Y            +                                   
Sbjct: 731 SKVKAMSYGLAYG-----LSAFGLS----------------------------------- 750

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                +        + +   +  +   V E  + +    E+    G              
Sbjct: 751 ----QQLGIATGEAQGLMDDYFARFGGVREYLDGV---VEEARATGYTATVL-------- 795

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR     D+ ++        +   R            +Q  + DI
Sbjct: 796 ---------------GRRRYLPDLTSDN---RQRRQMAERMALNAP------IQGSAADI 831

Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662
           +   M+   +          ++L VHDE+V E    +   A  +    M +   +   +P
Sbjct: 832 IKLAMLGVQRELDARGLRSRLLLQVHDELVVEVAPGEREAAEDVLRTQMGAA--YTLDVP 889

Query: 663 LKAEGYESKRY 673
           L       + +
Sbjct: 890 LDVSVGSGETW 900


>gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium]
          Length = 803

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/512 (17%), Positives = 163/512 (31%), Gaps = 122/512 (23%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             EQ L  + Q IN  G  +D A    L+  +  E T L+ ++ +       +    +++
Sbjct: 392 KIEQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKIYTHAG-REFNINSPKQM 450

Query: 240 KTWLFLETGLHLE--DLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
              LF E GL  +    T     +T +  L   ++  P   ++   R    +     ++ 
Sbjct: 451 GEVLFDEMGLKPKNQKKTAGGQRSTKESELEKMREDHPIITEILRYR-ELQKLVSTYIDN 509

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   +++DGRLR T    GA+ TGR +      QN+P  +                    
Sbjct: 510 LPPLVSADGRLRTTFVQTGAA-TGRMASQNPNLQNIPIRTEE------------------ 550

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                  S  +R   +AS G  +V  D + IE R+ A ++ ++  ++ F  GED++    
Sbjct: 551 -------SKAIRQAFVASPGYSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHTGVA 603

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            R F V P +VT++ R   KV+   + Y  G  A +                        
Sbjct: 604 VRVFGVTPEEVTREMRRKAKVINFGILYGMGVNALRGNL--------------------- 642

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                 +       +    A+    +R++E   E      +   
Sbjct: 643 ---------------------GEGTSREEAQEFFNAYFNTFTRLAEYLEETKAFARK--- 678

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                                  N       GR   +  + +   ++     Q  R    
Sbjct: 679 -----------------------NGYTETLFGRRRHFPGMQSTAPFIR---AQAERMAIN 712

Query: 594 GGKLTENIVQAVSRDILAEGMMNATK--------AGYDIVLTVHDEIVCETPDTDEF-NA 644
                   VQ  + D +   M    +            I+L VHDE++ E  +       
Sbjct: 713 AP------VQGTAADAMRVAMNLVYQYIQTEKKTDDVHILLQVHDELLFEIKNNVLETEI 766

Query: 645 SMLYHLMTSNPSWAK--GLPLKAEGYESKRYR 674
             L  LM          G+P+KA+      + 
Sbjct: 767 PKLVELMQGVLEGYDTSGVPIKADVAVGPNWG 798


>gi|187250908|ref|YP_001875390.1| DNA polymerase I [Elusimicrobium minutum Pei191]
 gi|186971068|gb|ACC98053.1| DNA polymerase [Elusimicrobium minutum Pei191]
          Length = 862

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/639 (13%), Positives = 178/639 (27%), Gaps = 146/639 (22%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARSNG 104
           D +    + + ++E   N  +  +     ++        ++    I       + A S  
Sbjct: 351 DNLTQEELLK-IEELANNKQILKI----SYDVKFTLRALDVTPKEIINCFDVRLAAYSLN 405

Query: 105 LPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
             +    KA+          + E K+          +            +    F  +  
Sbjct: 406 PGADIGFKALAAQY---LDVIIEPKDEKEFLTLQNQYIWSLKEVLERDLKEKDQFKIFN- 461

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                  E+             L  +   + + G  VD A     ++ ++ E   +  ++
Sbjct: 462 -----ELEL------------PLITVLLAMEEIGVLVDKAWLENFSKTLEGEIAAIQNDI 504

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
                    +    ++L   LF +  L     T+   +T + VL     L P   ++   
Sbjct: 505 NKD-AQREINVNSPKQLGALLFDQLKLPSVKKTKTGYSTDEEVLQQLVNLHPIVKKILEY 563

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R   ++     ++ L+   + + R+   L   G + TGR S      QN+P  +      
Sbjct: 564 R-SNAKLKSTYVDNLIMLADGNSRVHTYLDQTG-TVTGRLSSSSPNLQNIPIRTPKGR-- 619

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R   +A  GK L+  D + I+ R+LA  + +   +
Sbjct: 620 -----------------------MLRRAFVAEGGKTLLSVDYSQIDLRLLAHESQDSVLV 656

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+ G D++  T A  F V    V+ + R+  K +   +                    
Sbjct: 657 NAFKEGGDIHTKTAAEVFGVMREMVSDEMRSSAKAINFGII------------------- 697

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                      +     +          +     +   +  V E
Sbjct: 698 -------------------------YGQGPMGLSQNLNISVREAKEYIDNYFAVYKGVRE 732

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             ++      +                             +    G      +      +
Sbjct: 733 WIDKNIALARE--------------------------RGYVKTLLGHIRYLPEFKMGSGH 766

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635
           +        R           IVQ  S D++ + M +           ++L VHDE++ E
Sbjct: 767 M---ASFAQRAAI------NTIVQGGSADVIKKAMADIFNHYKGTEVKMLLQVHDELIFE 817

Query: 636 TPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+      A+++ + M         +PL AE      +
Sbjct: 818 LPEKNLLKEAAVIKNKMEHTIE--LKVPLLAEAKTGVNW 854


>gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
 gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541]
          Length = 876

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/580 (14%), Positives = 158/580 (27%), Gaps = 129/580 (22%)

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC--KGDVTVT 168
            +G+ L    +   + +      C           ++       +L              
Sbjct: 405 ELGDYLLHPEESRRDIERTAFALCGDAAEAPADLSDEQRAEREAQLAARLHSPLQAALAE 464

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
             +    +     E  L  +   +   G  V+           +     L +E+ +L   
Sbjct: 465 AGLLPLYQ---DVELPLVPVLAAMEQTGIYVNRTALERERAAANARIDALAEEIHALAGM 521

Query: 229 LVSSSRCLEKLKTWLFLET------GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
              +    ++L   LF          +       +T    L   +   P   +V   R  
Sbjct: 522 -EFNISSPKQLGEVLFERLELAAGTKIKKTKTGYSTNAETLEELRDRHPIVDKVLTYR-M 579

Query: 283 ASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
            ++     L+ +   +  + GR+         + TGR S      QN+P  +        
Sbjct: 580 WTKLRSTYLDGIGALIRPETGRVYTNFNQ-TVTATGRLSSSDPNLQNIPVRTEEGRA--- 635

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLK 400
                                 VR+     EG   L+ AD + IE R+LA M+G+   + 
Sbjct: 636 ----------------------VRALFEPGEGYDVLLSADYSQIELRILAHMSGDATLID 673

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF  G+D++  T A  F V    VT +QR   K +                    GL+  
Sbjct: 674 AFRHGQDIHARTAAEVFGVPIDAVTGEQRRRAKAVNF--------------GIVYGLSDY 719

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             +                               +            + + +++  V E 
Sbjct: 720 GLS------------------------------RDLRIPRKEAAGYIERYFERYHGVREF 749

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              L +       NG                             GR      + +     
Sbjct: 750 ---LDKTVADAHANGYVTTLY-----------------------GRRRELSAINSRNYMQ 783

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
            +      R            +Q  + D++   M+ A  A         I+L VHDE+V 
Sbjct: 784 RSF---AERMAMNTP------IQGTAADLIKIAMIRAHDALHAAGVKSRILLQVHDELVL 834

Query: 635 ETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
           E  + +    S L    M+     A  +PL  + +  K +
Sbjct: 835 EAAEAEIAQVSGLLRTAMSGAAELA--VPLAVDVHIGKNW 872


>gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977]
 gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus]
          Length = 902

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/678 (15%), Positives = 200/678 (29%), Gaps = 139/678 (20%)

Query: 16  LTKCGIC-KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNS 73
           L   G    Y  D   +  A    D      D        +  L E L +       H +
Sbjct: 339 LAVVGTYTPYDGDATAVAIASA--DGDGAYIDTTTVTPDDEAALAEWLADAARPKALHEA 396

Query: 74  YFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKE 128
                 L         +      T + A          AL  +    L+   +  ++G++
Sbjct: 397 KQAIHALA---GRGWELGGVTSDTALAAYLVRPGQRSFALDDLSLRYLRRELRAEDDGEQ 453

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
            ++   +    +    + +     A     +    DV + R   +    L+  E  +  +
Sbjct: 454 QLSLLDEDGAGDAKAAQAQMLRARAVIDLAD--ALDVELERI--ESAGLLTDMELPVQRV 509

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G  VD     +L         +      ++    + +    ++L+  LF E G
Sbjct: 510 LAGLESVGIAVDTDHLSSLQNQFASGIREAADAAYAVIGKQI-NLGSPKQLQVVLFDELG 568

Query: 249 LHLEDLTETT---CQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           +     T+T        L +       P    +  +R   +R  V  ++ L++++ +DGR
Sbjct: 569 MPKTKKTKTGYTTDADALQTLFDKTGHPFLEHLLTHR-DVTRLKVT-VDGLLKSVAADGR 626

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +  T     A+ TGR S      QN+P  + +  E                         
Sbjct: 627 IHTTFNQTIAA-TGRLSSTEPNLQNIPVRTEAGRE------------------------- 660

Query: 364 VRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +   G + L+  D + IE R++A ++ ++  ++AF TGEDL+    AR+F V   
Sbjct: 661 IRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEGLIEAFNTGEDLHSFVAARAFGVPID 720

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT + R   K M                    GL+                        
Sbjct: 721 EVTAELRRRVKAMSY--------------GLAYGLS------------------------ 742

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                     A +        +     +  +   V +    +     +            
Sbjct: 743 ------AYGLATQLKISNDEAKEQMDQYFSRFGGVRDYLRAVVDQARK------------ 784

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                         +       GR     D+ +             R            +
Sbjct: 785 --------------DGYTSTVLGRRRYLPDLDS---GDRLRREAAERAALNAP------I 821

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP 655
           Q  + DI+   M+   KA         ++L VHDE++ E  + +  +   L    M S  
Sbjct: 822 QGSAADIIKVAMITTDKALRDKGLRSRMLLQVHDELLFEVAEGERESLEALVRKTMGSA- 880

Query: 656 SWAKGLPLKAEGYESKRY 673
            +   +PL+      + +
Sbjct: 881 -YPLDVPLEVSVGYGRSW 897


>gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 870

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/646 (14%), Positives = 186/646 (28%), Gaps = 134/646 (20%)

Query: 38  DDHPVELWDCVHDPVMPQV-----LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           ++  V L +  +   + +      LK  +EN ++T + H+     TVL    ++ I    
Sbjct: 345 NEDKVYLINFKNIYSVNKDEANLALKAIMENEELTKIIHDGKSLVTVLNK-LDISIKTFE 403

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T + A       +   +   +     +   G+  I           +Y+  K    E
Sbjct: 404 -FDTAIAAYLIDSARSSYDLLTLINEYLGEDITGEGEILEGKVNFKLRDIYELLKKKIEE 462

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                  Y                        L ++  ++   G+ ++  +   L     
Sbjct: 463 EKMEELYYKVE-------------------HPLIFVLSSMEALGFNINKNMLDDLAIKFK 503

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269
            E T+ ++E+  L      +    ++L   LF +  L +   T+   +T   VL   +  
Sbjct: 504 EEITRTEKEIYDL-AEEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLQDK 562

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
                ++   R   ++     +  L   ++SDG +  +      + TGR S      QN+
Sbjct: 563 HEIIPKITYYRQ-ITKLNSTYVEGLKNVIDSDGHIHSSFNQTVTT-TGRLSSTEPNLQNI 620

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARV 388
           P       E                         +R   I   EG  L+  D + IE RV
Sbjct: 621 PIKYEMGRE-------------------------IRKVFIPDEEGDILLSCDYSQIELRV 655

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA M+ ++  + AF+   D++  T +  F V    VT   R+  K +   + Y     + 
Sbjct: 656 LAHMSNDENMIDAFKHHSDIHTKTASEVFKVPIEDVTSLMRSRAKAVNFGIVYGISDFSL 715

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
            +      L++             E +   + +   + +   E+      +     R   
Sbjct: 716 SQ-----DLHITKKEASEYMEIYFERYPKIKGYLDSVMQEAKENGYVLTILNR--RRFIP 768

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
             +  +  V  L     +        G A    K   V +                    
Sbjct: 769 EIKSSNRIVKALG---ERLAMNAPIQGSAADIIKLAMVNV-------------------- 805

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV 628
            Y  +                                    L   M+          L V
Sbjct: 806 -YNKLKEKE--------------------------------LKSTMI----------LQV 822

Query: 629 HDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           HDE++    + +      +    M         +PL+ +    K +
Sbjct: 823 HDELILNVKENELEEVKQIVKDEMEKVLD--MKVPLEVDTNMGKTW 866


>gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
 gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC
           14266]
          Length = 885

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/635 (13%), Positives = 173/635 (27%), Gaps = 139/635 (21%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGL---PSALK 110
           + L + L++T      H++     +L       I +      T + A           LK
Sbjct: 369 KALADYLQSTQ-PKFLHDAKTTYHMLA---GRGITLGGIAHDTALAAYLLNPGQRTYDLK 424

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
              +     + ++ E  +L                                         
Sbjct: 425 TTYQRHLHRTLEITETGQLSLLDITNTNTLITAAAAILELAATLPTK-----------LA 473

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
               LE     E  L  +   +   G  VD+              T+ +    ++     
Sbjct: 474 TINELELYLDLELPLTTILAEMEATGIAVDIPTLEEQLDTFTNLVTQEETAARTIAGDPN 533

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTP-QAIQVFNNRMRASRS 286
                 ++L+  LF   GL      +   +T  + + +     P + +          + 
Sbjct: 534 LLLTSPKQLQVVLFETLGLPKTKKIKTGYSTAAKEIETLAANHPHEFLNHLLAHREYQKM 593

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
               L  L++A+  DGR+  T Q    + TGR S      QN+P  + + ++        
Sbjct: 594 KTT-LEGLIKAVGDDGRIHTTFQQTM-TSTGRLSSTDPNLQNIPIRTPAGKK-------- 643

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                            +RS          L+ AD + IE RV+A ++ +   + A+  G
Sbjct: 644 -----------------IRSAFTVGTNYETLLTADYSQIEMRVMAHLSNDPGLITAYNNG 686

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           EDL+    A+ F+V P+ VT + R   K +   L                GL+    +  
Sbjct: 687 EDLHNYVGAKVFDVPPSGVTPELRRKVKALSYGLV--------------YGLSAFGLSQQ 732

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                 +++ + +  +   V    + + 
Sbjct: 733 ------------------------------LNIPAGEAKQIMENYFHRFGGVKHYLDTVV 762

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
               +                          +        R     ++ +       T  
Sbjct: 763 TQARK--------------------------DGYTATLFDRRRYLPELTSTN---RATRE 793

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT 639
              R            +Q  + DI+   M+          A   ++L VHDE+V E    
Sbjct: 794 NAERAALNAP------IQGTAADIIKIAMLRIHHELKKTNAKSRVLLQVHDELVVEIAPG 847

Query: 640 DEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +      L    M +  +    +PL+        +
Sbjct: 848 ELTTVKKLIEHEMDNAIT--LKVPLEVSTGHGPNW 880


>gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912]
 gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912]
          Length = 890

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 100/677 (14%), Positives = 188/677 (27%), Gaps = 137/677 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF+D E          G  ++             +   V    C  D    + L + L  
Sbjct: 340 LFLDLE----------GGYQF---GTPRGVGVA-EGERVRYLLCGEDSSWAEGLTQMLRE 385

Query: 64  TDVTIVAHNSYFE---RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
             +T++     ++     VL       +P       L+ A           + E      
Sbjct: 386 PGLTVL-----YDIKSWKVLADRLGFTLPGDA-FDVLLAAYLINPQDGHPDLTEVF---- 435

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            +   G  +     +G        R    +  A        K D+ + R ++       +
Sbjct: 436 -ERYLGVSVPPLEGRGSPQGEERQRWWALYAAALAGVYPALKRDLEI-RGLWPLYH---N 490

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L ++   +   G  VD     +L +    E  +L++E+  L      +    ++L 
Sbjct: 491 LELPLSFVLAKMERTGVRVDATRLRSLGETFSTEIARLEEEIYKLAGTT-FNLNSPKQLA 549

Query: 241 TWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF + GL  +  T+   +T   VL           ++ + R    +     +  L++ 
Sbjct: 550 EILFDKLGLPPQKKTKTGYSTGADVLEKLAPYHEIVQRILDWRQ-LIKLQSTYIEGLLKV 608

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +  +     T      + TGR S      QN+P        L                  
Sbjct: 609 IRPETGKIHTCFQQAVTATGRLSSTDPNLQNIPVRVEEGRRL------------------ 650

Query: 358 QIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  R   I SE G K+V AD + IE RVLA  + +   ++AF    D++  T A  
Sbjct: 651 -------RQAFIPSESGWKIVSADYSQIELRVLAHFSKDPALVQAFRDDLDIHARTAAEV 703

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V   QVT   R   K +   + Y            +  L +              ++ 
Sbjct: 704 FEVPQEQVTPGMRRQAKAVNFGIVYGIS-----DYGLSQNLGIPRKEAAEFIARYFAKFP 758

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
             +++         ++      +G    R        +  +        +    T   G 
Sbjct: 759 RVKSYMEETVAAARKNGFVTTLLGR--RRYLPDIHSSNYNLRSF---AERTAMNTPIQGS 813

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
           A    KR  V +     + +         R+ +   V +   +          +      
Sbjct: 814 AADIIKRAMVEVDRRLTEGDF--------RAKMLLQVHDELVFEVPPEEVGALQ------ 859

Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS 656
                      D++ + M                                      S  S
Sbjct: 860 -----------DMVKQAM-------------------------------------ESAVS 871

Query: 657 WAKGLPLKAEGYESKRY 673
               +PLK + +    +
Sbjct: 872 --LDVPLKVDIHAGDNW 886


>gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ]
          Length = 883

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 91/688 (13%), Positives = 185/688 (26%), Gaps = 157/688 (22%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69
           T   +D+    +   + D  +   +   + +            + + +      TD   V
Sbjct: 325 TYLGLDVQYTNLDTRSLD--IHSLSISKNKNEAFYIKEEQAKPLLEKILT----TDTLKV 378

Query: 70  AHNSYFERTVLKAC-FNLDIPI-HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
              +  +   L       +I I        V A+    P              +K     
Sbjct: 379 ---ATADYKSLLYYSLRNEIEISAEVFDV-VQAQFVANPG-------------EKNTIES 421

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP---------- 177
                                 + E         +        + + L            
Sbjct: 422 LSEKFLGSSIPAFEKKKPLPSENEEDLVQEISTAR--AHSCFRVSEFLLEELERKELLNV 479

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               + +L  +   +   G  ++ A      + +  +  +L   ++  +   V +    +
Sbjct: 480 FHDIDNKLTPVLAAMEYEGVHINKAFFSEYEKELQTKLDELQASVDKFSKEPV-NLNSPK 538

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT-PQAIQVFNNRMRASRSAVLKLNT 293
           ++   LF E  L +   T+   +T   VL         +   +        +     +  
Sbjct: 539 QVGVLLFEELELPVGKKTKTGYSTDSSVLEDLAAKGLSEVPALILEYREVGKILSTYVKA 598

Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + E +N   G++        A+ TGR S      QN+P  S                   
Sbjct: 599 IPELLNEASGKIHTHFNQNVAA-TGRLSSNHPNLQNIPIRSELGRR-------------- 643

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                      VR   IA  GK L+ AD + +E R+LA  + ++  + AF+ G D++  T
Sbjct: 644 -----------VRKGFIAGPGKILLAADYSQVELRLLAHFSNDKTMIDAFKKGVDIHRRT 692

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +    V   +V  + R+  K +   L                                 
Sbjct: 693 ASEIMGVPVEEVGSNDRSKAKAVNFGLM-------------------------------- 720

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                         ++    A          +     + ++ S V    + L +   +  
Sbjct: 721 ------------YGQSSFGLAAALKIPRKEAKEYITNYFERFSSVKGYLDHLKE---ECE 765

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           + G AI  +                       GR     D+ +      T      R   
Sbjct: 766 KTGYAITLK-----------------------GRKRYLADIHSTN---RTIKANAERVAI 799

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASM 646
                    +Q  + DI+   M+N  K          ++L VHDE++ E  +++      
Sbjct: 800 NSP------IQGTAADIIKLAMINIQKVLDDKKLKSKMILQVHDELIFEVVESELEEMKT 853

Query: 647 L-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           +    M    S    +PL  +      +
Sbjct: 854 ILKDGMEKVVS--LSVPLDVDMGVGVNW 879


>gi|157265305|ref|YP_001467864.1| DNA polymerase I [Thermus phage P23-45]
 gi|156905200|gb|ABU96844.1| DNA polymerase I [Thermus phage P23-45]
          Length = 728

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 111/779 (14%), Positives = 213/779 (27%), Gaps = 202/779 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--------- 54
           + +D ET             Y  D  ++  A          +   H   +          
Sbjct: 25  VALDTETYGSDPFN-----LYLPDFRLVGVAIATSPTEAWYFPVDHQDFLLRYQPANLPR 79

Query: 55  QVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKA 111
           + +++A LE     +V HN+ ++R VL    ++ +       T+V            LK 
Sbjct: 80  EAVRQAVLEALKRPVVYHNAAYDRRVLAVTLDIPLDQTYGDDTMVALHLVDENHPLGLKE 139

Query: 112 VGE------------------------------------ALKLSSQKMEEGKELIARFCK 135
             +                                      KL    ++  K+       
Sbjct: 140 WAKTLLGLEEVNADIEPPELTDEDQVEAVSKNGRRYKKKVHKLKPDWLQRLKDAFLAVHN 199

Query: 136 GETHECLYDRNK---------------------PNHREAWRLFGEYCKGDVTVTREIFKR 174
           G        +                               +   Y   D   T  +++ 
Sbjct: 200 GGVSYGALYKLLNRAFQQLKNRGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTLALWEH 259

Query: 175 LEPLSSKEQELWYLDQTIN-----------DRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           +E       +L  L + I             RG  VD      + + +     +  QE +
Sbjct: 260 VEVFFELHPKLHALYREIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEKAQEAQ 319

Query: 224 SLTYGLV--------SSSRCLEKLKTWLFLETGLHL--------EDLTETTCQRVLS--- 264
            L   L+        +     ++L T L+   G  +           ++T   ++L+   
Sbjct: 320 ELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKLLTLSP 379

Query: 265 SNKKLTPQAIQVFNNRMR---ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
            +K+  P A      +       +      ++++E ++  GRL      +G + +GR S 
Sbjct: 380 KDKRKAPLAKAFLEAKQAHEGLKKLLSTYTDSILEEVDPQGRLHTNFNTVG-TVSGRMSS 438

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QNLPR                       +   +    +R   +A  G   V AD 
Sbjct: 439 SNPNLQNLPR----------------LLPEEVAEKPYLQGIDIRKAFVADPGYIFVSADY 482

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-------QVTKDQRAIGKV 434
           A +E  V A ++G+         G DL+  T   +F V          +  KD R   KV
Sbjct: 483 ASMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQYKDYRQKAKV 542

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +  AL Y G      +         +            E +   + +   +     E   
Sbjct: 543 VNFALIYGGT-----EFTLIKNFGFSEEEAKQLIQGYFEAYPVVKTWMEEVYRELEEKGF 597

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +                 +  +      +              + +  R +P       
Sbjct: 598 VE-----------------YP-IYGYIKRMD-------------LPQALRKLPKDKWPLV 626

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
            NN     P  R   Y  + + +                       ++Q  S  ++ + +
Sbjct: 627 LNN----DPDARKQYYASLRSCQ---------------------NALIQGFSAFVVKDAI 661

Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
           +   +A         +++ VHDEIV    +      + +    M        G+ LKAE
Sbjct: 662 VQMQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMEREV---NGVLLKAE 717


>gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
 gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110]
          Length = 662

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 118/719 (16%), Positives = 214/719 (29%), Gaps = 175/719 (24%)

Query: 8   FETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELW---DCVHDPVMPQVLKEALE 62
            ET + +  D+   G+  +     + L      + PV L       H       L+  +E
Sbjct: 63  LETHTVVGLDIETTGLDPHTS--EISLIQIAAPNRPVILIEFRSITHKES----LRRFIE 116

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV--GEALKL 118
           +  +  V HN  FE   L     ++     WI T+++A+    GLP  L+       L +
Sbjct: 117 HHKIPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDIKAGVLPI 176

Query: 119 SS--QKMEEGKELIARFCKGETHECLYDR----------NKPNHREAW-----RLFGEYC 161
            +  Q ++  K+L     +         R          +K      W     +   +Y 
Sbjct: 177 PNLNQSIKNKKKLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDWGKPLTQEQLQYA 236

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYL---------DQTINDRGYCVDVALAHTLNQIVD 212
             D  V   +         + Q    +            +   G  +D+     L + ++
Sbjct: 237 ANDAAVVLPLRDTFRSKIIENQLADAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIE 296

Query: 213 VERTKLDQELESLTYGLVSSSR-----------CLEKLKTWLFLETGLHLEDLTETTCQR 261
             R    +    +     +                E++   L    G+H    T +T + 
Sbjct: 297 TRREDAAKIACEVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIH----TNSTSKD 351

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWS 320
            L    +  P+   +   R   S++       L   +N    R+   +  + A+  GR+S
Sbjct: 352 TLDKLSENHPEVFTIIEYRH-WSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAAS-GRFS 409

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 Q +PR                                 RSC + + G KL++AD
Sbjct: 410 FSNPNLQQIPR-----------------------------ERQYRSCFVPASGYKLIIAD 440

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+ A +A +   + A+   +DL+  T A        +VTK +R +GK +   L 
Sbjct: 441 YSQIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKPLDEVTKQERQLGKAVNFGLI 500

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y  GA   +  A                                      E         
Sbjct: 501 YGMGATKLRIYA--------------------------------------ETNYGVKMSI 522

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              +R +  + + +  + +   +                          +  +      +
Sbjct: 523 EEAQRFRDNFFKGYPGLHQWHQDT------------------------AFKLRTTKVKDI 558

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616
              SGR   ++D                        L    VQ  S DI    +      
Sbjct: 559 RTLSGRLRRWKDEPP------------------LTSLLNTPVQGTSADITKLALHKLNTD 600

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPS-WAKGLPLKAEGYESKRY 673
             + G   ++ VHDEIV E P+      S ML   M S    + K +P+  E   +  +
Sbjct: 601 LDELGGFPIVVVHDEIVLEVPEVHVAEGSTMLEEAMISAGKRFLKSVPVVVEATIADTW 659



 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 93/559 (16%), Positives = 178/559 (31%), Gaps = 99/559 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW---DCVHDPVMPQVLKE 59
            + +D ET      T            + L      + PV L       H       L+ 
Sbjct: 68  VVGLDIETTGLDPHTS----------EISLIQIAAPNRPVILIEFRSITHKES----LRR 113

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAV--GEA 115
            +E+  +  V HN  FE   L     ++     WI T+++A+    GLP  L+       
Sbjct: 114 FIEHHKIPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDIKAGV 173

Query: 116 LKLS--SQKMEEGKELIARFCKGETHECLYDR----------NKPNHREAW-----RLFG 158
           L +   +Q ++  K+L     +         R          +K      W     +   
Sbjct: 174 LPIPNLNQSIKNKKKLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDWGKPLTQEQL 233

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYL---------DQTINDRGYCVDVALAHTLNQ 209
           +Y   D  V   +         + Q    +            +   G  +D+     L +
Sbjct: 234 QYAANDAAVVLPLRDTFRSKIIENQLADAIQVELGALARVAQMGLMGMGLDLDRWGELAK 293

Query: 210 IVDVERTKLDQELESLTYGLVSSSR-----------CLEKLKTWLFLETGLHLEDLTETT 258
            ++  R    +    +     +                E++   L    G+H    T +T
Sbjct: 294 EIETRREDAAKIACEVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIH----TNST 348

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTG 317
            +  L    +  P+   +   R   S++       L   +N    R+   +  + A+  G
Sbjct: 349 SKDTLDKLSENHPEVFTIIEYRH-WSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAAS-G 406

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R+S      Q +PR                                 RSC + + G KL+
Sbjct: 407 RFSFSNPNLQQIPR-----------------------------ERQYRSCFVPASGYKLI 437

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
           +AD + IE R+ A +A +   + A+   +DL+  T A        +VTK +R +GK +  
Sbjct: 438 IADYSQIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKPLDEVTKQERQLGKAVNF 497

Query: 438 ALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
            L Y  GA   +  A T  G+ ++        ++  + +     + +          ++D
Sbjct: 498 GLIYGMGATKLRIYAETNYGVKMSIEEAQRFRDNFFKGYPGLHQWHQDTAFKLRTTKVKD 557

Query: 497 LFIGTACERVKKAWRQKHS 515
           +          + W+ +  
Sbjct: 558 I---RTLSGRLRRWKDEPP 573


>gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
 gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149]
          Length = 871

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 93/656 (14%), Positives = 179/656 (27%), Gaps = 149/656 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALEN---TDVTIVAHNSYFERTVLKACFNL--D 87
            A  +    V    C  D  M   L   L +   +    V     F+   LK    +   
Sbjct: 346 IALAYGKDQVYSIACSMDTDM-DALFAQLSDVARSAGRFV----MFD---LKKYLPVLGA 397

Query: 88  IPIHRWICTLVLARSNGL---PSALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLY 143
           +         V A            + V  E L L                         
Sbjct: 398 VCQKNCFDATVAAYLLNPLKNDYTYEDVAREQLGLMMD---------------------- 435

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL--DQTINDRGYCVDV 201
           D+     +  +  +  Y   +  +  ++ +        E E+  +     +   G  ++ 
Sbjct: 436 DKADEWTKSCYEAYTAYAASE-KLMEKLKEEQMDRLFLEIEMPLVFTLFDMEQAGVRIEA 494

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TT 258
                  + +  +  +L+ E+  +      +    ++L   LF +  +     T+   +T
Sbjct: 495 EELKKYGEQLGEQIVQLESEIYEMAG-ENFNINSPKQLGVILFEKLQMPHAKKTKTGYST 553

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL       P   ++   R   ++      + L   +  DGR+ GT      + TGR
Sbjct: 554 AADVLEKLAPEFPIVDKILEYRQ-LTKLKSTYADGLANYIGPDGRIHGTFNQ-TITATGR 611

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
            S      QN+P                             +   +R   +  EG   + 
Sbjct: 612 ISSTEPNLQNIPVR-------------------------MELGRLIRKVFVPQEGYVFID 646

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R+LA  +G+   ++A+   +D++  T ++ F     +VT  QR   K +   
Sbjct: 647 ADYSQIELRILAHCSGDAHLIQAYREAQDIHRMTASQVFKTPFDEVTDLQRRNAKAVNFG 706

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L++          S  E +   + F      +  E       
Sbjct: 707 IVYGIS-----SFGLSQDLSITRKEASQYIESYFETYPGIKKFLDDSVTHAKEEGYAVTL 761

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
            G    R     +  +           +        G A    K   + +          
Sbjct: 762 FGR--RRPIPELKSSNFMQRNFG---ERVAMNAPIQGTAADIMKIAMIGVN--------- 807

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                       R++   R                                +   M+   
Sbjct: 808 ------------RELKEKR--------------------------------MKSRMI--- 820

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
                  L VHDE++ ET   +      +    M +  S    +PL A+    K +
Sbjct: 821 -------LQVHDELLIETHPDEIETVKEILKRQMETAAS--LDVPLIADMQVGKNW 867


>gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 356

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 109/400 (27%), Positives = 170/400 (42%), Gaps = 64/400 (16%)

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT- 348
           K   +  A  +D R RG  QF GA+RTGRW+G +   QNLP+      +  + +  +   
Sbjct: 6   KYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIGDY 65

Query: 349 --SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   D    +S  +R+  IA  G K  VAD + IEARV+A +AGE W+   F+ G 
Sbjct: 66  DSLSMLYDDIPDTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKNGG 125

Query: 407 DLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           D+Y  + ++ F+V   +       R  GK+ ELALGY G   A + M             
Sbjct: 126 DIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG------------ 173

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                       A+E        + +  AWRQ +  +  LW + 
Sbjct: 174 ----------------------------ALEMGLTEDELQPLVDAWRQSNPNIVALWWDF 205

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNT 582
             A +  I+   +  +        +        L++ LPSGR L Y    +G N+    +
Sbjct: 206 DTAIKNAIKMHCSTASHG------IKFTWRSGMLLITLPSGRKLTYVKPRIGENKFGGES 259

Query: 583 -------TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                   T++  R   YG K  EN+VQA+SRD+L   M   +     I   VHDE++ E
Sbjct: 260 VTYEGIGATKKWERLEIYGPKFVENVVQAISRDLLMNAMKTLSH--CFICGHVHDELIIE 317

Query: 636 TPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
              +++ +  +L   M   P W   + L+A+GY ++ Y+K
Sbjct: 318 C--SEKVSLEVLCQQMARTPDWMPDILLRADGYVTEFYKK 355


>gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 882

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 97/667 (14%), Positives = 174/667 (26%), Gaps = 154/667 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A G       +          + L   L +     V H +      L     +++   R
Sbjct: 341 VAVGAPGGKAWV---RQWKDDAEALGAFLADPGRPKVLHGAKGAGHAL-RNIGVELDGVR 396

Query: 93  WICTLVLARSNGLP---SALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              TL+ A           L  +    L    +  +    L       +         + 
Sbjct: 397 -RDTLLQAYLLHPDQRVYDLDDLVIRYLGREIEGRKSPATLFDDVDSDDGAAAAAALVEL 455

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                  L       D  +              E  +      + D G  VD  L   L 
Sbjct: 456 ADAFDSELAER--GEDGAL-----------LDLEMAVSRTLGEMEDAGIAVDEGLLEQLR 502

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265
           Q  D       +       G V +    ++L+  LF + GL      ++   T    L++
Sbjct: 503 QDFDGRVFAAARSAYDAIGGEV-NLSSPKQLQEVLFDQLGLPPTRKMKSGHTTNADALAN 561

Query: 266 NK------------KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
                                 +  +R          +  L  ++  DGR+  T Q   A
Sbjct: 562 LAVSIAGREDDKALAGQQFLASLLEHRDAIKLRQS--VVGLQRSVR-DGRIHTTFQQ-TA 617

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR S      QN+   +                              +R+  +  EG
Sbjct: 618 AATGRLSSTDPNLQNIHARTAEGR-------------------------SIRAAFVPGEG 652

Query: 374 KK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
            + ++ AD + IE R++A ++G+   ++AF  G DL+    +R + V   +VT D R+  
Sbjct: 653 YESIMTADYSQIEMRLMAALSGDVELIEAFREGADLHTYVASRVYGVPEEKVTADDRSHI 712

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K M   L Y            +  L                                   
Sbjct: 713 KAMSYGLAYG-----LSAYGLSKQL----------------------------------- 732

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                      + +   +  +  RV    + L Q   +                      
Sbjct: 733 ----RISVAQAQALMDDYFSRFGRVRTYLDSLVQEARK---------------------- 766

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR     D+ +             R            +Q  + D++  
Sbjct: 767 ----EGYTQTILGRRRYLPDLNSTN---RQAREAAERMALNAP------IQGSAADVIKL 813

Query: 613 GMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
            M+       +    ++L VHDE+V E    +      +    M +    A  +PL    
Sbjct: 814 AMVAVVDSMKEMRSRVLLQVHDELVLEIAPGERDAVEAVVRREMENAVELA--VPLSVGI 871

Query: 668 YESKRYR 674
                +R
Sbjct: 872 GVGSSWR 878


>gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 903

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 100/649 (15%), Positives = 177/649 (27%), Gaps = 140/649 (21%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
             D        +      + +     V HN+     VL       +       T + A  
Sbjct: 371 WLDPTQLEEADEQAFAAWVSDPARPKVLHNAKNVMRVLPEH-GWQLEGVTM-DTALAAYL 428

Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   AL A+             G+EL              D          +    
Sbjct: 429 VKPGRRSFALDALAVEY--------LGRELAPAAAADGQLAFGADDRAEQDALMAQARAV 480

Query: 160 YCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
              GD   T  + +          E     L   +   G   D A    + Q       +
Sbjct: 481 LDLGDAFTT-RLKEVGAAELLHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQ 539

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK-----LTPQ 272
             +E  +       +    ++L+  LF E GL     T+T       +            
Sbjct: 540 AVKEAHAAVG-REFNLGSPKQLQEILFNELGLPKTKKTKTGYTTDADALAWLAAQTEHEL 598

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            + +  +R + ++  V  +  L++ + +DGR+  T     A+ TGR S      QN+P  
Sbjct: 599 PVLMLRHREQ-AKLRVT-VEGLIKTIATDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVR 655

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAW 391
           +                              +R   +  EG   L+ AD + IE RV+A 
Sbjct: 656 TDEGRA-------------------------IRRGFVVGEGFETLMTADYSQIELRVMAH 690

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ +   ++AF +GEDL+ T  ++ F V    V  + R   K M   L            
Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGL------------ 738

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               GL+    +  +  + A                                  +   + 
Sbjct: 739 --AYGLSAFGLSQQLNIDPA------------------------------EARVLMDTYF 766

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           ++   V +  + + +    T                                 GR     
Sbjct: 767 ERFGGVRDYLHRVVEEARAT--------------------------GYTETILGRRRYLP 800

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625
           D+ ++            R            +Q  + DI+   M+   KA         ++
Sbjct: 801 DLNSDN---RQRREAAERMALNAP------IQGTAADIVKVAMLRVDKALTEAGLTSRML 851

Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDEIV E    +      +    M +        PL       K +
Sbjct: 852 LQVHDEIVLEIAKGERKQVEEILRHEMANAVE--LRAPLDVSVGVGKDW 898


>gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 838

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/627 (14%), Positives = 189/627 (30%), Gaps = 150/627 (23%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-WICTLVLARSNGLPSALKAVGE 114
            + E L ++++  + +N+      LK   N  + +   +   +++A              
Sbjct: 345 RVNEIL-SSEILKIIYNAK---EALKKLKNSGLKLSPPYFDLMIVAYLINPNRG------ 394

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-IFK 173
              +                +          N   +   + L+ +  K       E ++ 
Sbjct: 395 KYNIDE-----------LILEYTGKFYENAENINFY--MFELYEKLNKELKEKELENLYF 441

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E  L  +   + + G  V++    TL + + +E  K+ +++ ++      + 
Sbjct: 442 ------DIEMPLIEVLFDMEETGIKVNIEKLETLTKHISMELDKIKEKIYTIAGT-EFNI 494

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   L+   GL      +   +T   VL           +V N R   ++     
Sbjct: 495 NSPKQLAEVLYDRLGLKTRKRGKKARSTEMEVLEELAIQHELPHEVINYR-TLNKLLTGY 553

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L  L + +N + +   T      + TGR        QN+P                    
Sbjct: 554 LIPLRDYINPETKRIHTKWSQTVAGTGRIVSSEPNLQNIPVKGE---------------- 597

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                     ++ +R   I   G   + AD + IE R+LA M+ +   +KAF  G+D++ 
Sbjct: 598 ---------WAEFLREVFIPENGYMFLSADYSQIELRLLAHMSEDPALIKAFLDGKDIHT 648

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F++    VT + R I K +   +              + G++    +  +K   
Sbjct: 649 ATASEIFSIPENAVTDEHRRIAKTVNFGI--------------SYGISPFGLSESIKI-- 692

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                            E + + +  ++  V +   E     ++
Sbjct: 693 ----------------------------PYEKAEELIELYFLRYPMVRKFIEETISFAQK 724

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                                     N  +    GR     ++ +   +L     Q  R 
Sbjct: 725 --------------------------NGYVRTLFGRIRPLPEINSPNQFLR---MQSERM 755

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA 644
                      VQ  + DI+   M+         K    I+L +HDEIV E         
Sbjct: 756 AVNAR------VQGTAADIIKIAMIRIYNRLKKEKLNAKIILQIHDEIVLEVEQKVIEKV 809

Query: 645 SMLYH-LMTSNPSWAKGLPLKAEGYES 670
           S +    M     ++  +PL+   +  
Sbjct: 810 SEIVQNEMK---DFSLSVPLEVNVFSG 833


>gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 858

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/650 (13%), Positives = 180/650 (27%), Gaps = 146/650 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            +  + +  +   +         ++   L +  V  + HN    R +      ++  +  
Sbjct: 327 LSLSYSESNIFYIEQDSIQDALIIINLTLLSNGVLKIIHNIKEIRKIF---PAIEKMLDS 383

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
               ++++       +L        + +       E    F             +   +E
Sbjct: 384 VDDLMIMSY------SLDTGKHDHSIPNIVAHNLSENAEIFSAKTLIAIHEKLKQRLFQE 437

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                             I++R +           +   +   G  +++     L+    
Sbjct: 438 KL--------------LTIYERFDKPL------MKVIFDMEKNGILLNIQKLQELSDKFQ 477

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNK 267
                L+ E+ +L      +    ++L   LF + GL+ +  ++      T   VL + +
Sbjct: 478 QVIAVLEDEIYNLAG-ERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALE 536

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           +   +      N    S+      + L++ ++       T     A+ TGR S      Q
Sbjct: 537 EEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQ 596

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  S                              +R   IA +G K++ AD + IE R
Sbjct: 597 NIPIRSEEGN-------------------------LIRQAFIAPKGHKIISADYSQIELR 631

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +A      +AF  G+D++  T  + F V   ++ +  R   K +            
Sbjct: 632 LLAHVANVAAFKEAFANGQDIHEITARQVFGV--QEIDEQLRRKAKSINF---------- 679

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A                                            
Sbjct: 680 ----GIIYGISPFGLAKR------------------------------LGITIAEAAEYI 705

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             +   +  +        +A      +G                             GR 
Sbjct: 706 NYYFSCYPEIKAYM---EKAVSIARLHGYVETL-----------------------FGRR 739

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-TKAGY-DIV 625
              RD+ N   Y+        R             Q  + DI+    +    +     I+
Sbjct: 740 CFVRDINNTIPYIRQF---AERAAINAPL------QGTAADIIKRATIQLFDQLKVGKII 790

Query: 626 LTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           L VHDE++ E   +  +  A ++  +M +       +PL+ E      + 
Sbjct: 791 LQVHDELLVEVEDEKVQETAKLIKDIMENAIE--ISIPLEVEIKIGDNWG 838


>gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583]
 gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22]
 gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200]
 gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1]
 gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2]
 gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200]
 gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5]
 gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96]
 gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1]
 gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188]
 gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11]
 gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98]
 gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712]
 gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613]
 gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1]
 gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76]
 gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109]
 gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860]
 gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248]
 gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512]
 gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102]
 gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635]
 gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516]
 gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470]
 gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017]
 gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027]
 gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141]
 gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244]
 gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012]
 gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031]
 gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043]
 gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312]
 gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645]
 gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341]
 gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B]
 gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630]
 gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A]
 gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467]
          Length = 882

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/652 (13%), Positives = 186/652 (28%), Gaps = 122/652 (18%)

Query: 33  FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
               + ++       +       P    + L +       +++      L          
Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 393

Query: 91  HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 L+ A              V +     + + +E              E ++  + 
Sbjct: 394 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
               +A +      K D  +T +   + +     E  L  +   +   G  VD      +
Sbjct: 454 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 509

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
                    ++++++ +       +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 510 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 568

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K+  P    +   R   ++     +  L++ +  D ++         ++TGR S    
Sbjct: 569 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 626

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383
             QN+P       +                         +R   +  E   L+  +D + 
Sbjct: 627 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 661

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442
           IE RVLA ++ ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y 
Sbjct: 662 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG 721

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                      +  L +         ++  E++   + +   +  +  +    +      
Sbjct: 722 IS-----DYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 775

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             R       ++  +        +    T   G A    K   +                
Sbjct: 776 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIE--------------- 816

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              R L    +                             QA                  
Sbjct: 817 -MARRLKEEKL-----------------------------QAT----------------- 829

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E P+++      ++  +M    S    +PL  +    K +
Sbjct: 830 -MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 694

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/651 (15%), Positives = 183/651 (28%), Gaps = 144/651 (22%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +D        +      L + +   V HN+     V     +  +       T + A  
Sbjct: 162 WFDPSELDEADERAWVAWLADAERPKVLHNAKGAMRVFAEH-DWSVAGVSM-DTALAAYL 219

Query: 103 NGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    L A+                L          +        +  EA  L  +
Sbjct: 220 VKPGRRSFDLDALSLEY------------LGRELAPPAAADGQLAFGADDGAEAEALMVQ 267

Query: 160 -YCKGDVTVTR--EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
                D+       + +          E     L   +   G   D A    + Q+    
Sbjct: 268 ARAVLDLGSAFEGRLAEVGAADLLRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGA 327

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNK-KLT 270
             +  +E          +    ++L+  LF E GL     T+T        L+    +  
Sbjct: 328 VQQAVKEAHGAAGH-EFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLATQTD 386

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
            +   +       ++  V  +  L++ + +DGR+  T     A+ TGR S      QN+P
Sbjct: 387 NELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP 444

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVL 389
             +                              +R   +  EG + L+ AD + IE RV+
Sbjct: 445 VRTDEGRA-------------------------IRRGFVVGEGFESLMTADYSQIELRVM 479

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++ +   ++AF +GEDL+ T  ++ F V P  V  + R   K M   L          
Sbjct: 480 AHLSEDAGLIEAFTSGEDLHTTAASQVFAVEPGAVDAEMRRKIKAMSYGL---------- 529

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                 GL+    +  +   +                                   +  A
Sbjct: 530 ----AYGLSAFGLSQQLNIEAG------------------------------EARALMDA 555

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           + ++   V +    L +A ++    G                             GR   
Sbjct: 556 YFERFGGVRDY---LRRAVDEARATGYTATL-----------------------FGRRRY 589

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAG--YD 623
             D+ ++            R            +Q  + DI+   M+        AG    
Sbjct: 590 LPDLNSDN---RQRREAAERMALNAP------IQGTAADIVKIAMLKVDGALRDAGLASR 640

Query: 624 IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           ++L VHDEIV E    +   A  +    M+        +PL     +   +
Sbjct: 641 MLLQVHDEIVLEVAPGERGVAEEIVRREMSDAVD--LRVPLGVSVGDGSDW 689


>gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol]
 gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol]
          Length = 882

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/652 (13%), Positives = 185/652 (28%), Gaps = 122/652 (18%)

Query: 33  FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
               + +        +       P    + L +       +++      L          
Sbjct: 338 VGLAWGNDKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 393

Query: 91  HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 L+ A              V +     + + +E              E ++  + 
Sbjct: 394 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
               +A +      K D  +T +   + +     E  L  +   +   G  VD      +
Sbjct: 454 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 509

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
                    ++++++ +       +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 510 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 568

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K+  P    +   R   ++     +  L++ +  D ++         ++TGR S    
Sbjct: 569 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 626

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383
             QN+P       +                         +R   +  E   L+  +D + 
Sbjct: 627 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 661

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442
           IE RVLA ++ ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y 
Sbjct: 662 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG 721

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                      +  L +         ++  E++   + +   +  +  +    +      
Sbjct: 722 IS-----DYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 775

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             R       ++  +        +    T   G A    K   +                
Sbjct: 776 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIE--------------- 816

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              R L    +                             QA                  
Sbjct: 817 -MARRLKEEKL-----------------------------QAT----------------- 829

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E P+++      ++  +M    S    +PL  +    K +
Sbjct: 830 -MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG]
 gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3]
 gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704]
 gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6]
 gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG]
 gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855]
 gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137]
 gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62]
 gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF]
          Length = 882

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/652 (13%), Positives = 185/652 (28%), Gaps = 122/652 (18%)

Query: 33  FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
               + +        +       P    + L +       +++      L          
Sbjct: 338 VGLAWGNDKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 393

Query: 91  HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 L+ A              V +     + + +E              E ++  + 
Sbjct: 394 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
               +A +      K D  +T +   + +     E  L  +   +   G  VD      +
Sbjct: 454 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 509

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
                    ++++++ +       +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 510 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 568

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K+  P    +   R   ++     +  L++ +  D ++         ++TGR S    
Sbjct: 569 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 626

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383
             QN+P       +                         +R   +  E   L+  +D + 
Sbjct: 627 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 661

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442
           IE RVLA ++ ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y 
Sbjct: 662 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG 721

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                      +  L +         ++  E++   + +   +  +  +    +      
Sbjct: 722 IS-----DYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 775

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             R       ++  +        +    T   G A    K   +                
Sbjct: 776 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIE--------------- 816

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              R L    +                             QA                  
Sbjct: 817 -MARRLKEEKL-----------------------------QAT----------------- 829

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E P+++      ++  +M    S    +PL  +    K +
Sbjct: 830 -MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
 gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731]
          Length = 872

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/648 (14%), Positives = 180/648 (27%), Gaps = 147/648 (22%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIH 91
             F                 + +   L++  ++     +  +   L         ++   
Sbjct: 359 LAFAGKHYVFCPETAGK---EAVLSLLQDPAISK----AAADPKELYKYMMGQGKNLQGI 411

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                 +        ++            Q + E + L A   +G               
Sbjct: 412 T-DDPALAGYLYEPGAS--------GYGIQALGE-EFLPAASGEGAQDTAALVPVLREKL 461

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           E   L   Y   D+ +                        +   G  VD A+   +   +
Sbjct: 462 EERGLTRLY--EDIELPL----------------TENLAEMEFTGIAVDQAMLDEVTGEM 503

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268
             +   L+Q+          +    ++L   LF + GL +   T+   +T   VL + + 
Sbjct: 504 TKKVQALEQQAWDQAG-EQFNLNSPKQLGVLLFEKLGLPIIKKTKTGYSTDVSVLEALQG 562

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQ 327
             P    + + R   S+     L  L   +N   GR+      + A+ TGR S      Q
Sbjct: 563 EHPLIETLISYRQ-LSKLLSTYLLGLHPLINPATGRIHTHFNQM-ATVTGRLSSTEPNLQ 620

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEA 386
           N+P  +   +                          +R   +  EG   L+  D + +E 
Sbjct: 621 NIPTRTEVGKR-------------------------MREMFVPGEGYDLLMSCDYSQVEL 655

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RV+A +A ++  L +F  G+D++  T +  F V   QVT   R+  K +   + Y     
Sbjct: 656 RVMASIAQDELLLDSFRHGQDVHARTASEIFGVPLDQVTPYMRSKAKTVNFGIIYGIS-- 713

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                     L +          S    +   + +    ++   E    +          
Sbjct: 714 ---DFGLARQLGVPRGEAAQYIESYFARYTGVKAYMEREKQKAREMGYVETLF------- 763

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                                              +RR +P +  K              
Sbjct: 764 ----------------------------------GRRRYLPDINAKNFN----------- 778

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
              + +     + +  T   + +      K+  N         L E      +    ++L
Sbjct: 779 RRSFAERTAINTPIQGTAADIIKVAM--LKVARN---------LKEA-----RVKSRVLL 822

Query: 627 TVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE+V E P  ++     +    M      A  +PL A+    K +
Sbjct: 823 QVHDELVLEIPAAEQETVGKIVKETMEHAVDLA--VPLVADVAVGKNW 868


>gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
 gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176]
          Length = 837

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 102/678 (15%), Positives = 193/678 (28%), Gaps = 165/678 (24%)

Query: 12  SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH 71
           SP+ L   G    A++       +   D  V L            L   L++     V  
Sbjct: 305 SPLPLVVEGRLYLAQNAD--GSWYAVQDGQVFL-------PGTDRLAALLDSDADLWV-- 353

Query: 72  NSYFERTVLKACFNLD---IPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEE 125
              F+   L     LD   I         + A      ++   +K +     + +     
Sbjct: 354 ---FDAKPL-YHLALDRGGIGKAIHFDGKLAAYLLNPSASGYAVKNLAGEYDVPA----- 404

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
                A  C+      +          A    G+    D                 E  L
Sbjct: 405 -----AFTCEAAPDAGVLAALLDKLAAALDESGQRKLHD---------------EMELPL 444

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   +   G+ VD          +  E   + Q +         +    ++L   LF 
Sbjct: 445 ARVLADMERIGFAVDADGIRAFGDSLRGELDGILQSIYEEVGY-EFNVNSPKQLGEALFD 503

Query: 246 ETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           + GL     T    +T    L S +  +P   Q+   R   ++     +  L+ A  +DG
Sbjct: 504 KLGLPPRKKTSRGYSTDAATLESLRPYSPVIDQILKYR-TYAKLLSTYVEGLLSAQAADG 562

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           R+  T     A RTGR S      QN+P  +                          +  
Sbjct: 563 RVHSTFIQTEA-RTGRISSTEPNLQNIPIRTE-------------------------LGS 596

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   +A  GK+LV AD + IE R+LA + G++   +AF  G D++ +T A+ +++  +
Sbjct: 597 RLRGFFVAGAGKELVDADYSQIELRILAHITGDEAMQQAFLHGADIHRSTAAKIYHIPES 656

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT   R+  K +   +                                           
Sbjct: 657 EVTPQLRSASKAINFGIM------------------------------------------ 674

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               +     + +        +   K +     +V     +     ++            
Sbjct: 675 --YGKGAFSLSKDLDVSVKEADAFLKTYLATFPKVDGYMQDCIAHAKE------------ 720

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR     ++ ++            R            +
Sbjct: 721 --------------KGYVETLFGRRRALPELASSNF---QVRASGERMA------RNTPI 757

Query: 603 QAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655
           Q  + DI+   M++        K    ++L VHDE++ E P+ +      +    M    
Sbjct: 758 QGTAADIIKLAMVHVWQRLRDEKLEARLLLQVHDELIVEAPEAEVEEVKRVLREEMEQVV 817

Query: 656 SWAKGLPLKAEGYESKRY 673
            +   +PL  +    K +
Sbjct: 818 QY--SVPLTTDVGTGKTW 833


>gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii
           M21/2]
          Length = 857

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/655 (15%), Positives = 196/655 (29%), Gaps = 162/655 (24%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHR 92
           +   D  V              L   L+N DVT+   NS   + + +    +   I    
Sbjct: 345 YAVQDTTVY--PLED-----ADLVRLLDNADVTLDVFNSAPLYAKAMAAGGWGSSI---- 393

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                + A      ++                  K  I+           +     ++ +
Sbjct: 394 VWDGKLAAYLLDASAS------------------KYQISELIPAYKAAAAFTCT--DYPD 433

Query: 153 AWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
           A RL   + +    +T      ++      +  E  L  +   +   G  VD        
Sbjct: 434 AGRLADLFARMKAEITACGEDALY------NEIEFPLAQVLADMTRTGVLVDKDGIEQFG 487

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSS 265
             +  E  ++   +   T     +    ++L   LF   GL     T    +T    L S
Sbjct: 488 VKLREELEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLES 547

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            ++  P    V   R    +     +  L++ +  DGR+  T     A RTGR S     
Sbjct: 548 LRE-YPLVEDVLQYR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPN 604

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +                          +   +R+  +A  G  LV AD + IE
Sbjct: 605 LQNIPIRTE-------------------------LGSQLRAYFVAKPGCVLVDADYSQIE 639

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA + G++   +AF  GED++ +T A+ + +  ++VT   R+  K +          
Sbjct: 640 LRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAIN--------- 690

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G                              +     + +        + 
Sbjct: 691 -----FGIMYG------------------------------KGAYSLSKDIGVTVKEADA 715

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
             K +      VS   ++     +                           N  +    G
Sbjct: 716 FLKNYLAAFPSVSGYMDKTIADAK--------------------------ANGYVSTLFG 749

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TK 619
           R     ++ +    +  +  ++ R            +Q  + D++   M+         K
Sbjct: 750 RRRTLPELASTNFNVRASGERMAR---------NTPIQGTAADVIKLAMVRVWKRLRDEK 800

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
               ++LTVHDE++ E P+ +   A+ +    M     +A  +PL  + +  K +
Sbjct: 801 MASRLILTVHDELIVEAPEAEAEQAARILREEMEGCVQYA--VPLSTDVHAGKNW 853


>gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987]
 gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A]
 gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85]
 gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210]
 gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987]
 gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85]
 gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A]
 gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148]
          Length = 904

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/598 (15%), Positives = 180/598 (30%), Gaps = 136/598 (22%)

Query: 95  CTLVLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            T + A           L  +       +L ++  ++ +  +      +         + 
Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTILRA 478

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                     +     +  T  +          E  +  +   +   G  VD+ +   L 
Sbjct: 479 RAVIDLADALDAELARIDSTALLG-------EMELPVQRVLAKMESAGIAVDLPMLTELQ 531

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265
                +     +    +    + +    ++L+  LF E G+     T+T   T    L S
Sbjct: 532 SQFGDQIRDAAEAAYGVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQS 590

Query: 266 NKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P    +  +R   +R  V  ++ L++A+ +DGR+  T     A+ TGR S   
Sbjct: 591 LFDKTGHPFLQHLLAHR-DVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTE 647

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382
              QN+P  + +                            +R   +  +G  +L+ AD +
Sbjct: 648 PNLQNIPIRTDAGRR-------------------------IRDAFVVGDGYAELMTADYS 682

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT + R   K M   L   
Sbjct: 683 QIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL--- 739

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        GL+    +  +K                                   
Sbjct: 740 -----------AYGLSAYGLSQQLKI------------------------------STEE 758

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                 A+  +   V +    +    E+  ++G                           
Sbjct: 759 ANEQMDAYFARFGGVRDYLRAV---VERARKDGYTSTVL--------------------- 794

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             GR     ++ ++            R            +Q  + DI+   M+   KA  
Sbjct: 795 --GRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIQVDKALN 843

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE++ E    +      L    M     +   +PL+      + +
Sbjct: 844 EAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGA--YPLDVPLEVSVGYGRSW 899


>gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1]
          Length = 845

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/578 (15%), Positives = 180/578 (31%), Gaps = 128/578 (22%)

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF--GEYCKGDV 165
            LK                   I + C         +  +     +  L         D 
Sbjct: 379 NLKDDAAICGYLLNTSASDYA-IEKLCAEYGVHYYSENGEFADLLSIELLIKKLRSVIDK 437

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
               E+ +++E        L  +  ++ D G C+D          +     +  Q +   
Sbjct: 438 EGMTELLEKIE------LPLTEVLASMEDIGICIDKQGVEDFGTYLTEMIEETQQMVYDD 491

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMR 282
                 +    ++L T LF E GL  +  T++   T   VL   +   P    V   R  
Sbjct: 492 AGHS-FNIASPKQLGTVLFEEMGLPAKKKTKSGYSTNAEVLEELRNDAPIVDNVLKFRQY 550

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++     +  L++ +  DGR+    +    +RTGR S      QN+P  +         
Sbjct: 551 -TKLNSTYVVGLLDKIADDGRIHTWFRQ-TETRTGRISSTEPNMQNIPVRTE-------- 600

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                            +   +R   +A +G+KLV AD + IE RV+A + G++  ++AF
Sbjct: 601 -----------------LGAQMRKFFVAPKGRKLVDADYSQIELRVMAHLCGDKNMIEAF 643

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            +GED++ +T A+ F++    VT + R+  K +   +                       
Sbjct: 644 NSGEDIHTSTAAQVFDMPSIMVTPEMRSAAKAVNFGII---------------------- 681

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                         A +        ++    +  K+ +V+E   
Sbjct: 682 ----------------------YGIGAFSLAKDIGTSVAKAKKYINDYLAKYEKVNEFM- 718

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                 +   ++G                             GR     ++ ++   +  
Sbjct: 719 --ETTVDNAFKDGYVTTM-----------------------FGRKRRIPELSSSNKMMQA 753

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
             +++              VQ  + D++   M+N             ++L VHDE++ E 
Sbjct: 754 AGKRI---------AMNTPVQGTAADLIKIAMINVYNRLKAEDIDAKLILQVHDELILEA 804

Query: 637 PDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++D    A +L   M +       +PL  + +    +
Sbjct: 805 SESDAEHAAQLLKEEMQNVYE--MKVPLSVDVHTGDSW 840


>gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1]
 gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1]
          Length = 887

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/658 (14%), Positives = 201/658 (30%), Gaps = 132/658 (20%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACFN 85
           + FA   +D          D  + Q   L+  LE+  +     N  F+     V      
Sbjct: 343 VGFALKINDQ----IYVSRDVELLQETNLRHLLEDEQIKK---NV-FDLKRTMVGLHRLG 394

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           + +    +   L+ +      +    +GE   L        K  I  + KG++     D 
Sbjct: 395 IHVHGQDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDIEIYGKGKSEHVPDDD 451

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW--YLDQTINDRGYCVDVAL 203
            +  +  A ++          +  ++ +  +       E+    +   +   G  V+ + 
Sbjct: 452 EELFNHLASKVNAIENLKQPLLE-KLKEHEQDDLFDTIEIPTARVLARMEINGMKVEAST 510

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
              L     V   +L+ ++         +    ++L   LF +  L +   T+   +T  
Sbjct: 511 LLELQNEFAVRLKELEDKIYQQAG-ERFNLNSPKQLGHILFEKLNLPVIKKTKTGYSTSV 569

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL   K  +P   ++ + R   ++     +  L++ +  DGR+         + TGR S
Sbjct: 570 EVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHTRYLQ-TLTATGRLS 627

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379
                 QN+P  +   +                          +R   +       +   
Sbjct: 628 SVDPNLQNIPTRTEEGK-------------------------QIRKAFVPTEPDGYIFSC 662

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELA 438
           D + +E RVLA ++G+Q   +AF+TG D++  T  R F++  P +VT   R   K +   
Sbjct: 663 DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNFG 722

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y            +  L ++        ++  E++     +     +   E    +  
Sbjct: 723 IVYGIS-----DYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETI 777

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      +RR +P ++ KK     
Sbjct: 778 -----------------------------------------MHRRRYLPDIHAKKFTVRS 796

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                             R+ +N+  +          K+    +Q               
Sbjct: 797 F---------------AERTAINSPIQG---SAADIIKIAMINMQ-----------KKLD 827

Query: 619 KAGYD--IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +      +V+ VHDE++ + P  +      +   +M S       +PL A+      +
Sbjct: 828 ELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGWGHNW 883


>gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97]
 gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11]
 gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503]
 gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A]
 gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85]
 gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207]
 gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506]
 gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475]
 gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I
 gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I
 gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv]
 gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv]
 gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551]
 gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97]
 gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C]
 gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra]
 gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11]
 gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435]
 gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A]
 gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85]
 gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503]
 gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001]
 gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002]
 gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003]
 gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004]
 gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005]
 gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006]
 gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007]
 gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008]
 gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009]
 gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010]
 gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012]
 gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A]
 gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207]
 gi|740010|prf||2004291B DNA polymerase I
          Length = 904

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/598 (15%), Positives = 180/598 (30%), Gaps = 136/598 (22%)

Query: 95  CTLVLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            T + A           L  +       +L ++  ++ +  +      +         + 
Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTILRA 478

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                     +     +  T  +          E  +  +   +   G  VD+ +   L 
Sbjct: 479 RAVIDLADALDAELARIDSTALLG-------EMELPVQRVLAKMESAGIAVDLPMLTELQ 531

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265
                +     +    +    + +    ++L+  LF E G+     T+T   T    L S
Sbjct: 532 SQFGDQIRDAAEAAYGVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQS 590

Query: 266 NKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P    +  +R   +R  V  ++ L++A+ +DGR+  T     A+ TGR S   
Sbjct: 591 LFDKTGHPFLQHLLAHR-DVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTE 647

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382
              QN+P  + +                            +R   +  +G  +L+ AD +
Sbjct: 648 PNLQNIPIRTDAGRR-------------------------IRDAFVVGDGYAELMTADYS 682

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT + R   K M   L   
Sbjct: 683 QIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL--- 739

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        GL+    +  +K                                   
Sbjct: 740 -----------AYGLSAYGLSQQLKI------------------------------STEE 758

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                 A+  +   V +    +    E+  ++G                           
Sbjct: 759 ANEQMDAYFARFGGVRDYLRAV---VERARKDGYTSTVL--------------------- 794

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             GR     ++ ++            R            +Q  + DI+   M+   KA  
Sbjct: 795 --GRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIQVDKALN 843

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE++ E    +      L    M     +   +PL+      + +
Sbjct: 844 EAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGA--YPLDVPLEVSVGYGRSW 899


>gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478]
          Length = 900

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/603 (15%), Positives = 179/603 (29%), Gaps = 145/603 (24%)

Query: 95  CTLVLARSNGLPS---ALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLY 143
            T + A           L  +                Q++    ++     +      L 
Sbjct: 414 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQQQLSLLDDMEGVDDQAVQTAILR 473

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
            R   +  EA     E  + D T               E  +  +   +   G  VD+ L
Sbjct: 474 ARAVADLAEALD--AELARIDSTALLA---------DMELPVQRVLADMERAGIAVDLRL 522

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQ 260
              L      +     +   ++    + +    ++L+  LF E G+     T+T   T  
Sbjct: 523 LAELQSQFADQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 581

Query: 261 RVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
             +    +    P    +  +R   +R  V  ++ L+ ++ +DGR+  T     A+ TGR
Sbjct: 582 DAVQGLFEKTGHPFLQHLLAHR-DVTRLKVT-VDGLLNSVAADGRIHTTFNQTIAA-TGR 638

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLV 377
            S      QN+P  + +                            +R   +   G  +L+
Sbjct: 639 LSSTEPNLQNIPIRTDAGR-------------------------QIRDAFVVGAGYSELM 673

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT + R   K M  
Sbjct: 674 TADYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSY 733

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            L                GL+                                  + +  
Sbjct: 734 GL--------------AYGLS------------------------------AYGLSTQLK 749

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +     +  +   V +    L    EQ  ++G                      
Sbjct: 750 ISTEEAKVQMDQYFARFGGVRDY---LMAVVEQARKDGYTSTVL---------------- 790

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR     ++ ++            R            +Q  + DI+   M+  
Sbjct: 791 -------GRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIEV 834

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670
            KA         ++L VHDE++ E    +      L    M     +   +PL+      
Sbjct: 835 DKALTEAGLASRMLLQVHDELLFEIAPGERERVEALVREKMGGA--YPLDVPLEVSVGFG 892

Query: 671 KRY 673
           + +
Sbjct: 893 RSW 895


>gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
 gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605]
          Length = 903

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/598 (15%), Positives = 180/598 (30%), Gaps = 136/598 (22%)

Query: 95  CTLVLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            T + A           L  +       +L ++  ++ +  +      +         + 
Sbjct: 418 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTILRA 477

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                     +     +  T  +          E  +  +   +   G  VD+ +   L 
Sbjct: 478 RAVIDLADALDAELARIDSTALLG-------EMELPVQRVLAKMESAGIAVDLPMLTELQ 530

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265
                +     +    +    + +    ++L+  LF E G+     T+T   T    L S
Sbjct: 531 SQFGDQIRDAAEAAYGVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQS 589

Query: 266 NKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P    +  +R   +R  V  ++ L++A+ +DGR+  T     A+ TGR S   
Sbjct: 590 LFDKTGHPFLQHLLAHR-DVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTE 646

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382
              QN+P  + +                            +R   +  +G  +L+ AD +
Sbjct: 647 PNLQNIPIRTDAGRR-------------------------IRDAFVVGDGYAELMTADYS 681

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT + R   K M   L   
Sbjct: 682 QIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL--- 738

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        GL+    +  +K                                   
Sbjct: 739 -----------AYGLSAYGLSQQLKI------------------------------STEE 757

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                 A+  +   V +    +    E+  ++G                           
Sbjct: 758 ANEQMDAYFARFGGVRDYLRAV---VERARKDGYTSTVL--------------------- 793

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             GR     ++ ++            R            +Q  + DI+   M+   KA  
Sbjct: 794 --GRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIQVDKALN 842

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE++ E    +      L    M     +   +PL+      + +
Sbjct: 843 EAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGA--YPLDVPLEVSVGYGRSW 898


>gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1]
 gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I
 gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1]
          Length = 956

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/528 (15%), Positives = 147/528 (27%), Gaps = 127/528 (24%)

Query: 165 VTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVER 215
             +T  + + L PL    +   Y         +   +  RG  VD     TL+    V  
Sbjct: 533 AAITGHLLRELPPLLDDARRKMYDEMEKPLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRL 592

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLT 270
             L+ ++     G     R  ++L+T L+ +  L     T+     +T    L   +   
Sbjct: 593 ADLESQIHE-YAGEEFHIRSPKQLETVLYDKLELASSKKTKLTGQRSTAVSALEPLRDAH 651

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    V   R    +     L+ +   +N       T     A  TGR S      QN+P
Sbjct: 652 PIIPLVLEFR-ELDKLRGTYLDPIPNLVNPHTGRLHTTFAQTAVATGRLSSLNPNLQNIP 710

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
             S    E                         +R   IA +G  L+ AD + IE R+LA
Sbjct: 711 IRSELGRE-------------------------IRKGFIAEDGFTLIAADYSQIELRLLA 745

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +A +    +AF  G D++  T A+   +  A V  +QR   K +               
Sbjct: 746 HIADDPLMQQAFVEGADIHRRTAAQVLGLDEATVDANQRRAAKTVN-------------- 791

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G++                                  + +            + +
Sbjct: 792 FGVLYGMS------------------------------AHRLSNDLGIPYAEAATFIEIY 821

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              +  +    N                          +   +      +    GR    
Sbjct: 822 FATYPGIRRYIN------------------------HTLDFGRTHG--YVETLYGRRRYV 855

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVL 626
             + +             R            +Q  + DI+   M+         G  ++L
Sbjct: 856 PGLSSRN---RVQREAEERLAYNMP------IQGTAADIMKLAMVQLDPQLDAIGARMLL 906

Query: 627 TVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE++ E P       + L   +M +       +PL  E      +
Sbjct: 907 QVHDELLIEAPLDKAEQVAALTKKVMENVVQ--LKVPLAVEVGTGPNW 952


>gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342]
          Length = 882

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/652 (13%), Positives = 186/652 (28%), Gaps = 122/652 (18%)

Query: 33  FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
               + ++       +       P    + L +       +++      L          
Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 393

Query: 91  HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 L+ A              V +     + + +E              E ++  + 
Sbjct: 394 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
               +A +      K D  +T +   + +     E  L  +   +   G  VD      +
Sbjct: 454 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 509

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
                    ++++++ +       +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 510 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 568

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K+  P    +   R   ++     +  L++ +  D ++         ++TGR S    
Sbjct: 569 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 626

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383
             QN+P       +                         +R   +  E   L+  +D + 
Sbjct: 627 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 661

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442
           IE RVLA ++ ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y 
Sbjct: 662 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG 721

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                      +  L +         ++  E++   + +   +  +  +    +      
Sbjct: 722 IS-----DYGLSPKLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 775

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             R       ++  +        +    T   G A    K   +                
Sbjct: 776 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIE--------------- 816

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              R L    +                             QA                  
Sbjct: 817 -MARRLKEEKL-----------------------------QAT----------------- 829

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E P+++      ++  +M    S    +PL  +    K +
Sbjct: 830 -MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302]
          Length = 882

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/652 (13%), Positives = 186/652 (28%), Gaps = 122/652 (18%)

Query: 33  FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
               + ++       +       P    + L +       +++      L          
Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 393

Query: 91  HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 L+ A              V +     + + +E              E ++  + 
Sbjct: 394 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
               +A +      K D  +T +   + +     E  L  +   +   G  VD      +
Sbjct: 454 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 509

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
                    ++++++ +       +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 510 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 568

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K+  P    +   R   ++     +  L++ +  D ++         ++TGR S    
Sbjct: 569 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 626

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383
             QN+P       +                         +R   +  E   L+  +D + 
Sbjct: 627 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 661

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442
           IE RVLA ++ ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y 
Sbjct: 662 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTSNMRRQAKAVNFGIVYG 721

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                      +  L +         ++  E++   + +   +  +  +    +      
Sbjct: 722 IS-----DYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 775

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             R       ++  +        +    T   G A    K   +                
Sbjct: 776 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIE--------------- 816

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              R L    +                             QA                  
Sbjct: 817 -MARRLKEEKL-----------------------------QAT----------------- 829

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E P+++      ++  +M    S    +PL  +    K +
Sbjct: 830 -MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8]
 gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411]
 gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134]
 gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000]
          Length = 882

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/628 (13%), Positives = 182/628 (28%), Gaps = 118/628 (18%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA--- 111
           Q   + L +       +++      L                L+ A              
Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGK--MTGIAFDVLLAAYLLDTNDNNADIEG 417

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           V +     + + +E              E ++  +     +A +      K D  +T + 
Sbjct: 418 VAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLT--SKLDSELTEK- 474

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
             + +     E  L  +   +   G  VD      +         ++++++ +       
Sbjct: 475 -NQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAG-EEF 532

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF + GL +   T+   +T   VL   K+  P    +   R   ++   
Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQ-IAKIQS 591

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L++ +  D ++         ++TGR S      QN+P       +          
Sbjct: 592 TYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDPNLQNIPIRLEEGRK---------- 640

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R   +  E   L+  +D + IE RVLA ++ ++   +AF  G+D
Sbjct: 641 ---------------IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQD 685

Query: 408 LYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++ +T  R F V     VT + R   K +   + Y            +  L +       
Sbjct: 686 IHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGIS-----DYGLSQNLGITRKQAQQ 740

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             ++  E++   + +   +  +  +    +        R       ++  +        +
Sbjct: 741 YIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR--RRYLSDINSRNFNLRSF---AER 795

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
               T   G A    K   +                   R L    +             
Sbjct: 796 TAINTPIQGSAADILKIAMIE----------------MARRLKEEKL------------- 826

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-S 645
                           QA                   ++L VHDE+V E P+++      
Sbjct: 827 ----------------QAT------------------MLLQVHDELVFEVPESELEQLNQ 852

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++  +M    S    +PL  +    K +
Sbjct: 853 LVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
 gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1]
 gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11]
          Length = 848

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/652 (13%), Positives = 186/652 (28%), Gaps = 122/652 (18%)

Query: 33  FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
               + ++       +       P    + L +       +++      L          
Sbjct: 304 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 359

Query: 91  HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 L+ A              V +     + + +E              E ++  + 
Sbjct: 360 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 419

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
               +A +      K D  +T +   + +     E  L  +   +   G  VD      +
Sbjct: 420 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 475

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
                    ++++++ +       +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 476 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 534

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K+  P    +   R   ++     +  L++ +  D ++         ++TGR S    
Sbjct: 535 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 592

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383
             QN+P       +                         +R   +  E   L+  +D + 
Sbjct: 593 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 627

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442
           IE RVLA ++ ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y 
Sbjct: 628 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG 687

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                      +  L +         ++  E++   + +   +  +  +    +      
Sbjct: 688 IS-----DYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 741

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             R       ++  +        +    T   G A    K   +                
Sbjct: 742 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIE--------------- 782

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
              R L    +                             QA                  
Sbjct: 783 -MARRLKEEKL-----------------------------QAT----------------- 795

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE+V E P+++      ++  +M    S    +PL  +    K +
Sbjct: 796 -MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 844


>gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
 gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1]
          Length = 903

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/649 (15%), Positives = 177/649 (27%), Gaps = 140/649 (21%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
             D        +      + +     V HN+     V        +       T + A  
Sbjct: 371 WLDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFPEH-GWRLEGVTM-DTALAAYL 428

Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   AL A+             G+EL              D          +    
Sbjct: 429 VKPGRRSFALDALAVEY--------LGRELAPAAASDGQLAFGADDRAEQDALMAQARAV 480

Query: 160 YCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
              GD   T  + +          E     L   +   G   D A    + Q       +
Sbjct: 481 LDLGDAFTT-RLKEVGAAELLHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQ 539

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK-----LTPQ 272
             +E  +       +    ++L+  LF E GL     T+T       +            
Sbjct: 540 AVKEAHAAVG-REFNLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHEL 598

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            + +  +R + ++  V  +  L++ + +DGR+  T     A+ TGR S      QN+P  
Sbjct: 599 PVLMLRHREQ-AKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVR 655

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAW 391
           +                              +R   +  EG   L+ AD + IE RV+A 
Sbjct: 656 TDEGRA-------------------------IRRGFVVGEGFETLMTADYSQIELRVMAH 690

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ +   ++AF +GEDL+ T  ++ F V    V  + R   K M   L Y          
Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGLAY---------- 740

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               GL+    +  +  + A                                  +   + 
Sbjct: 741 ----GLSAFGLSQQLNIDPA------------------------------EARVLMDTYF 766

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           ++   V +  + + +    T                                 GR     
Sbjct: 767 ERFGGVRDYLHRVVEEARAT--------------------------GYTETILGRRRYLP 800

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625
           D+ ++            R            +Q  + DI+   M+   KA         ++
Sbjct: 801 DLNSDN---RQRREAAERMALNAP------IQGTAADIVKVAMLRVDKALTEAKLTSRML 851

Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDEIV E    +      +    M +        PL       K +
Sbjct: 852 LQVHDEIVLEIAKGERKQVEEILRHEMANAVE--LRAPLDVSVGVGKDW 898


>gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1]
 gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1]
          Length = 957

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/696 (12%), Positives = 168/696 (24%), Gaps = 161/696 (23%)

Query: 20  GICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKE--------------ALE 62
           G+  +  D   I      +          H      +   L                 +E
Sbjct: 377 GLHLHRGDAGAIGLGIAVEPGRAVYVPIEHRAGGDGLFGGLAPGQIDAAAAWGAVGALME 436

Query: 63  NTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           +  V  + H    +          L   I       +++ +         L  +      
Sbjct: 437 DAGVRKIVH----DLKGTAKAAGRLGFEIAGADDVGLMSYALESGLTGHGLPELAARH-- 490

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L       +               A R               ++  L P 
Sbjct: 491 ----------LGNAAPDPDALRGQGRGRVDAEAVAPRAAAPVAAQIADAVLRLWTVLAPR 540

Query: 179 SSK----------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                        E  +  +   +   G  +D A+   L++       +L+ E+  L  G
Sbjct: 541 LEGTPTQAVYEELELPMVPVLARMEAAGVRIDRAVLTELSRDFGATLARLETEIHELGGG 600

Query: 229 LVSSSRCLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
                   +++   LF   GL            T   +L               +  R S
Sbjct: 601 P-FQIGSPKQIGDVLFGRLGLPGGRRTPSGQWATGATILEELAAAGHALPGRLLDWRRTS 659

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +      + L+ A +       T   L A+ TGR S       N+P  +           
Sbjct: 660 KLKSTYADALLSAADRGTDRVHTTFSLAATTTGRLSSSDPGLHNIPIRTEEGRR------ 713

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                              +R+  +A+EG +++ AD + +E R+LA +A      +AF  
Sbjct: 714 -------------------IRAAFVAAEGHRILSADYSQVELRLLAHIADVPRMREAFAE 754

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D++  T +  F V    V  + R   K +   + Y   A           L +     
Sbjct: 755 GVDIHAATASDMFGVPVGAVPGELRRRAKTINFGIVYGISA-----FGLADRLGIGRQEA 809

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV----SEL 520
                   E +    ++    +    EH       G  C          +  +       
Sbjct: 810 AEFIARYFERFPGIRDYVEGTKTFCREHGFVRTLFGRVCH---------YPGITSGNVSE 860

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +        G A    +R  + +     D                          
Sbjct: 861 RMGVERQAVNAPIQGTAADIIRRAMIRMEGALADSGL----------------------- 897

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                                    +R      ++                +V E  + +
Sbjct: 898 ------------------------SAR-----MLLQVHDE-----------LVFEVAEAE 917

Query: 641 -EFNASMLYHLM--TSNPSWAKGLPLKAEGYESKRY 673
               A ++  +M   + P     +PL  E   ++ +
Sbjct: 918 CADTARVVSDVMAGAAAPDIDLAVPLVVEARSAENW 953


>gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08]
          Length = 920

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/662 (14%), Positives = 183/662 (27%), Gaps = 133/662 (20%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFN 85
              V   A G  D     +D        +      L + +     H++      L     
Sbjct: 372 SGDVEAVALGCVDGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEALA-GRG 430

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
            ++       T + +              + K            +    +      L   
Sbjct: 431 WEVAGLTC-DTELASYLLHPDR------RSHKFDDAVRTHLNLTLGEGEENSDQAMLDFG 483

Query: 146 NKPNHREAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           N  +     R        DV     E     E L   E  +     ++   G  VD  + 
Sbjct: 484 NDSSAESMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDIL 543

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261
             L    D   T+            + +    ++L+  LF +  +     T++   T   
Sbjct: 544 EGLRSEFDERVTRAQGAAWEAAGEKI-NLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDAD 602

Query: 262 VLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            L+   +    P    +  +R          ++ L++ +  DGR+  T     A+ TGR 
Sbjct: 603 ALAGLYEKTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTIAA-TGRL 659

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378
           S      QN+P  +                              +R   +  EG + L+ 
Sbjct: 660 SSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLS 694

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G+Q  + AF +G+D +  T +  F VAP  V+  QR+  K M   
Sbjct: 695 ADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 754

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            GL+                                  + +   
Sbjct: 755 --------------LAYGLS------------------------------AYGLSNQLKV 770

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                + +   +  +  +V E    L +  +Q    G                       
Sbjct: 771 SVGEAKELMAGYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------------- 810

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM--- 615
                 GR     D+ +             R            +Q  + D++   M+   
Sbjct: 811 ------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMVATD 855

Query: 616 -NATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
               +AG    ++L VHDE++ E    +E     +    M         +PL       +
Sbjct: 856 QKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAME--LSVPLTVSIGVGR 913

Query: 672 RY 673
            +
Sbjct: 914 SW 915


>gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
 gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275]
          Length = 891

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 103/664 (15%), Positives = 184/664 (27%), Gaps = 142/664 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           +I      D   V               K  LE+ D+    +N   +   L      +I 
Sbjct: 346 IICMYITLDGDKVFCVS----EERIMDFKAVLESKDIKKYGYNMKEDYVAL---MPYEIA 398

Query: 90  IHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
           +        +        S           S       K L+      E       + K 
Sbjct: 399 LKGMSFDIAIAEYLIDSTST--------NTSECGAIAMKYLMKSVKSKEELLGKGVKAKK 450

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYC 198
                      Y    +        +++               E  L  +   +   G  
Sbjct: 451 FEDLTKEELSGYISSILNTVVNAMPKMKEEIESTKIEKLFDDVEMPLVEVLGNMEYTGIK 510

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           VD  +   L +      + L++E+     G   +    ++L   LF +  L +   T+  
Sbjct: 511 VDKEMLDELGKEFTKIISSLEEEIYG-YAGEEFNINSPKQLGVILFEKLELPVIKKTKTG 569

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGAS 314
            +T   VL   K   P   ++   R    +     +  L   +N  DGR+  T      +
Sbjct: 570 YSTNAEVLEKLKDKHPIIDKIGEYRQIV-KLNSTYVEGLTALINPIDGRIHSTFNQ-TIT 627

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S      QN+P        L                         R+  ++ + K
Sbjct: 628 TTGRISSTEPNLQNIPVRMEIGRRL-------------------------RAVFVSDDEK 662

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           +LV AD + +E RVLA M+G+Q  + AF+ GED++  T ++ FNV   +VT + R+  K 
Sbjct: 663 RLVDADYSQVELRVLAHMSGDQNMIDAFKHGEDIHRKTASQVFNVPVEEVTSELRSAAKA 722

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y            +  LN+          S   ++E  + F   + E   +   
Sbjct: 723 VNFGIIYGKT-----DFGLSEDLNIPVPQAKQYIESYFAKYEKIKEFMDNIIETAEKDGY 777

Query: 495 EDLFIGTACERVKKAWRQKHSRV--SELWNEL--HQAFEQTIENGKAIIARKRRDVPLVY 550
                           R+    +            +A       G A    K   V +  
Sbjct: 778 SQTMFNR---------RRYIPEIKSKNFMERNRGKRAAMNAPIQGSAADIIKIAMVNVF- 827

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                          R L   ++ +                                   
Sbjct: 828 ---------------RRLEKEELRSK---------------------------------- 838

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
                        ++L VHDE++ ETP  +      +    M +       + L  +   
Sbjct: 839 -------------LILQVHDELIVETPIDELEKVEKIVREEMENAVD--MKVALTVDLNT 883

Query: 670 SKRY 673
              +
Sbjct: 884 GVSW 887


>gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
 gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05]
          Length = 887

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 95/659 (14%), Positives = 201/659 (30%), Gaps = 134/659 (20%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACFN 85
           + FA   +           D  + Q   L+  LE+  +     N  F+     V      
Sbjct: 343 VGFALKIN----YQIYVSRDVELLQETNLRHLLEDEQIKK---NV-FDLKRTMVGLHRLG 394

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           + +    +   L+ +      +    +GE   L        K  I  + KG++     D 
Sbjct: 395 IHVHGQDY-DMLLASYLINNENNSNDLGEIAHL--YGDYSVKTDIEIYGKGKSEHVPDDD 451

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW--YLDQTINDRGYCVDVAL 203
            +  +  A ++          +  ++ +  +       E+    +   +   G  V+ + 
Sbjct: 452 EELFNHLASKVNAIENLKQPLLE-KLKEHEQDDLFDTIEIPTARVLARMEINGMKVEAST 510

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
              L     V   +L+ ++         +    ++L   LF +  L +   T+   +T  
Sbjct: 511 LLELQNEFAVRLKELEDKIYQQAG-ERFNLNSPKQLGHILFEKLNLPVIKKTKTGYSTSV 569

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL   K  +P   ++ + R   ++     +  L++ +  DGR+         + TGR S
Sbjct: 570 EVLDQLKTQSPIVSEILDYRQ-IAKIQSTYVKGLLDVIQPDGRVHTRYLQ-TLTATGRLS 627

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVV 378
                 QN+P  +   +                          +R   +    +G     
Sbjct: 628 SVDPNLQNIPTRTEEGK-------------------------QIRKAFVPTNPDGYIF-S 661

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMEL 437
            D + +E RVLA ++G+Q   +AF+TG D++  T  R F++  P +VT   R   K +  
Sbjct: 662 CDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNF 721

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y            +  L ++        ++  E++     +     +   E    + 
Sbjct: 722 GIVYGIS-----DYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAET 776

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                                                       +RR +P ++ KK    
Sbjct: 777 I-----------------------------------------MHRRRYLPDIHAKKFTVR 795

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                              R+ +N+  +          K+    +Q              
Sbjct: 796 SF---------------AERTAINSPIQG---SAADIIKIAMINMQ-----------KKL 826

Query: 618 TKAGYD--IVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            +      +V+ VHDE++ + P  +      +   +M S       +PL A+      +
Sbjct: 827 DELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGWGHNW 883


>gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905]
          Length = 533

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 129/354 (36%), Positives = 190/354 (53%), Gaps = 8/354 (2%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 4   NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 62

Query: 62  ENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
              +  +  HNS+F+RTVL+     L  P+ RW  T+V A ++GLP +L  + E L +  
Sbjct: 63  AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 122

Query: 121 QK--MEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            K   +EGK LI  FCK         R     H E WR F  Y   D+   RE++ RL  
Sbjct: 123 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPK 182

Query: 178 LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            + +  EL  W+ DQ INDRG C+D+ LA    + VD E+ +L +  + +T G V ++  
Sbjct: 183 WNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 242

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            + L   +    G+ L D+  +T +R ++    L     ++   R++AS ++  K   L+
Sbjct: 243 RDALIKHIVESYGVELPDMQRSTLERRIAD-PDLPSAVKEMLAIRLQASTTSTSKYKALM 301

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           + ++ DGRLRGTLQF GASRTGRW+G +F PQNLPRPS   E++D+ I     +
Sbjct: 302 KGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEAPNAA 355


>gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1]
 gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1]
          Length = 1062

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 138/458 (30%), Positives = 215/458 (46%), Gaps = 40/458 (8%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQ 55
           M     LF+D ET S +DL K G   YAE     +++  +  D+  V+ WDC   P MP+
Sbjct: 1   MKDFERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPKMPR 60

Query: 56  VLKEALENTDVTI---VAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            L++AL          V  N   F+R V++  + +D+P+ +   T+++A  + LP +L  
Sbjct: 61  ELRKALRQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAFRHALPGSLDM 120

Query: 112 VGEALKLSSQ--KMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVT 168
             + L + ++  K + GK LI RFCK         R  +  H E W  F  Y   D+   
Sbjct: 121 QCQVLGVDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAM 180

Query: 169 REIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           RE++ R+    +  +E     +DQ INDRG+ VDV LA+   + V   + +L +E     
Sbjct: 181 REVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQAHKEELKEEAWERF 240

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            G ++ +  L  L+          + +  ++T   +L        +   +   R+ AS +
Sbjct: 241 GGKLTGNDFLPILRDIAPA---FTIHNAQKSTLNDLLED-PDFPDEGKALIEMRLGASST 296

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           A  K N LV  +++DGR RG LQ+ GA RT RW+G  F PQNL R   S +   +I    
Sbjct: 297 ASTKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRRE 356

Query: 347 PTSITSD----------------------PDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             S  S                        D  ++ +  VR C+I ++GKK VVAD + +
Sbjct: 357 GESDVSFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNV 416

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           E R LAW+AGE+  L  F+ G D+Y  T  + F + P 
Sbjct: 417 EGRGLAWVAGEKTALMVFKAGRDIYCETAGKMFGLDPD 454



 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 95/300 (31%), Positives = 124/300 (41%), Gaps = 53/300 (17%)

Query: 429  RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM--- 485
              +    EL LGY GG  AF + A   GL+L T A ++K       W  A+    +    
Sbjct: 763  FLVAHNCELGLGYGGGVAAFLQFAKNLGLDLYTMADVMKGTFPDHIWAAAKRGYEYARIN 822

Query: 486  ---------QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                     +++     I    +   C+ +K+ WR+ H +    W EL  A    I N  
Sbjct: 823  EAKRPPKPGKKDERPTYILPKNVWLTCDAIKRMWREAHPKTVAFWAELEDAVLCAIRNPG 882

Query: 537  AIIARKRRDVPLVYMKKD----------------------KNNLILMLPSGRSLVYRDVG 574
                      P                                L + LPSGR + Y  + 
Sbjct: 883  KAYWAGANVRPDGRKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIA 942

Query: 575  NNRS-------------------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
             + +                     N TTRQ   +YTYGGKLTENIVQA+ RDILA  M 
Sbjct: 943  LSVTTEIDEDTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMP 1002

Query: 616  NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                AGY+IVL+VHDE++ E PDTD++    L  LM   P WAKG PL AEG    RYRK
Sbjct: 1003 GVEAAGYEIVLSVHDELITEVPDTDDYTTEELCALMCDLPIWAKGFPLAAEGDCMYRYRK 1062


>gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
 gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142]
          Length = 662

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 110/716 (15%), Positives = 212/716 (29%), Gaps = 169/716 (23%)

Query: 8   FETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            ET + +  D+   G+  +     + L      + PV L +        + L+  +E+  
Sbjct: 63  LETHTVVGLDIETTGLDPHTS--EISLIQIAAPNRPVILIE-FRGITNKETLRRFIEHPK 119

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE--ALKLSS- 120
           +  V HN  FE   L     ++     WI T+++++    GLP  L+   +   L +   
Sbjct: 120 IPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPIPDL 179

Query: 121 -----QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-----------RLFGEYCKGD 164
                 K +  +EL        +   +  R      +             +   +Y   D
Sbjct: 180 TRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWGKPLTQEQLQYAAND 239

Query: 165 VTVTREIFKRLEPLSSKEQELWYL---------DQTINDRGYCVDVALAHTLNQIVDVER 215
             V   + + L       Q    +            +   G  +D+     L + ++  R
Sbjct: 240 AAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIETRR 299

Query: 216 TKLDQELESLTYGLVSSSR-----------CLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
               +    +     +                E++   L    G+H +  ++ T    L 
Sbjct: 300 EDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIHTDSTSKDT----LD 354

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCV 323
              +  P+   +   R   S++       L   +N    R+   +  + A+  GR+S   
Sbjct: 355 KLSENHPEVFTIIEYRH-WSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAAS-GRFSFSN 412

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              Q +PR                                 RSC + + G KL++AD + 
Sbjct: 413 PNLQQIPR-----------------------------ERQYRSCFVPAPGYKLIIADYSQ 443

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+ A +A +   + A+   +DL+  T A        +VTK +R +GK +   L    
Sbjct: 444 IELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKDIDEVTKQERQLGKAVNFGLI--- 500

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G+                               + E            
Sbjct: 501 -----------YGMGATKL------------------------RIYAETNYGVSMTFDEA 525

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +R +  + + +  + +   +                             +      +   
Sbjct: 526 QRFRDNFFKGYPGLHQWHQDT------------------------ACKLRTTKVKDIRTL 561

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TK 619
           SGR   ++D                        L    VQ  S DI    +        +
Sbjct: 562 SGRLRRWKDEPP------------------LTSLLNTPVQGTSADITKLALHKLNSDLDE 603

Query: 620 AGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673
            G   ++ VHDEIV E P+      ++ML   M S    + K +P+  E   +  +
Sbjct: 604 IGGFPIVVVHDEIVLEVPEDHVAEGSAMLEEAMVSAGKRFLKSVPVVVEAAIADSW 659



 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 89/556 (16%), Positives = 178/556 (32%), Gaps = 93/556 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D ET      T            + L      + PV L +        + L+  +E
Sbjct: 68  VVGLDIETTGLDPHTS----------EISLIQIAAPNRPVILIE-FRGITNKETLRRFIE 116

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGE--ALKL 118
           +  +  V HN  FE   L     ++     WI T+++++    GLP  L+   +   L +
Sbjct: 117 HPKIPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPI 176

Query: 119 SS------QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-----------RLFGEYC 161
                    K +  +EL        +   +  R      +             +   +Y 
Sbjct: 177 PDLTRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWGKPLTQEQLQYA 236

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYL---------DQTINDRGYCVDVALAHTLNQIVD 212
             D  V   + + L       Q    +            +   G  +D+     L + ++
Sbjct: 237 ANDAAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIE 296

Query: 213 VERTKLDQELESLTYGLVSSSR-----------CLEKLKTWLFLETGLHLEDLTETTCQR 261
             R    +    +     +                E++   L    G+H +  ++ T   
Sbjct: 297 TRREDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIHTDSTSKDT--- 352

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWS 320
            L    +  P+   +   R   S++       L   +N    R+   +  + A+  GR+S
Sbjct: 353 -LDKLSENHPEVFTIIEYRH-WSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAAS-GRFS 409

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 Q +PR                                 RSC + + G KL++AD
Sbjct: 410 FSNPNLQQIPR-----------------------------ERQYRSCFVPAPGYKLIIAD 440

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+ A +A +   + A+   +DL+  T A        +VTK +R +GK +   L 
Sbjct: 441 YSQIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKDIDEVTKQERQLGKAVNFGLI 500

Query: 441 YQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
           Y  GA   +  A T  G+++         ++  + +     + +          ++D+  
Sbjct: 501 YGMGATKLRIYAETNYGVSMTFDEAQRFRDNFFKGYPGLHQWHQDTACKLRTTKVKDI-- 558

Query: 500 GTACERVKKAWRQKHS 515
                   + W+ +  
Sbjct: 559 -RTLSGRLRRWKDEPP 573


>gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92]
 gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054]
 gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
 gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92]
 gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054]
          Length = 904

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 91/598 (15%), Positives = 180/598 (30%), Gaps = 136/598 (22%)

Query: 95  CTLVLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            T + A           L  +       +L ++  ++ +  +      +         + 
Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTILRA 478

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                     +     +  T  +          E  +  +   +   G  VD+ +   L 
Sbjct: 479 RAVIDLADALDAELARIDSTALLG-------EMELPVQRVLAKMESAGIAVDLPMLTELQ 531

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265
                +     +    +    + +    ++L+  LF E G+     T+T   T    L S
Sbjct: 532 SQFGDQIRDAAEAAYGVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQS 590

Query: 266 NKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P    +  +R   +R  V  ++ L++A+ +DGR+  T     A+ TGR S   
Sbjct: 591 LFDKTGHPFLQHLLAHR-DVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTE 647

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382
              QN+P  +                           S  +R   +  +G  +L+ AD +
Sbjct: 648 PNLQNIPIRT-------------------------DASRRIRDAFVVGDGYAELMTADYS 682

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT + R   K M   L   
Sbjct: 683 QIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL--- 739

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        GL+    +  +K                                   
Sbjct: 740 -----------AYGLSAYGLSQQLKI------------------------------STEE 758

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                 A+  +   V +    +    E+  ++G                           
Sbjct: 759 ANEQMDAYFARFGGVRDYLRAV---VERARKDGYTSTVL--------------------- 794

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             GR     ++ ++            R            +Q  + DI+   M+   KA  
Sbjct: 795 --GRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIQVDKALN 843

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE++ E    +      L    M     +   +PL+      + +
Sbjct: 844 EAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGA--YPLDVPLEVSVGYGRSW 899


>gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322]
 gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322]
          Length = 837

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/628 (13%), Positives = 182/628 (28%), Gaps = 118/628 (18%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA--- 111
           Q   + L +       +++      L                L+ A              
Sbjct: 315 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGK--MTGIAFDVLLAAYLLDTNDNNADIEG 372

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           V +     + + +E              E ++  +     +A +      K D  +T + 
Sbjct: 373 VAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLT--SKLDSELTEK- 429

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
             + +     E  L  +   +   G  VD      +         ++++++ +       
Sbjct: 430 -NQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAG-EEF 487

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +    ++L   LF + GL +   T+   +T   VL   K+  P    +   R   ++   
Sbjct: 488 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQ-IAKIQS 546

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L++ +  D ++         ++TGR S      QN+P       +          
Sbjct: 547 TYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDPNLQNIPIRLEEGRK---------- 595

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R   +  E   L+  +D + IE RVLA ++ ++   +AF  G+D
Sbjct: 596 ---------------IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQD 640

Query: 408 LYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++ +T  R F V     VT + R   K +   + Y        +      L +       
Sbjct: 641 IHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQY-----LGITRKQAQQ 695

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             ++  E++   + +   +  +  +    +        R       ++  +        +
Sbjct: 696 YIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR--RRYLSDINSRNFNLRSF---AER 750

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
               T   G A    K   +                   R L    +             
Sbjct: 751 TAINTPIQGSAADILKIAMIE----------------MARRLKEEKL------------- 781

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-S 645
                           QA                   ++L VHDE+V E P+++      
Sbjct: 782 ----------------QAT------------------MLLQVHDELVFEVPESELEQLNQ 807

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           ++  +M    S    +PL  +    K +
Sbjct: 808 LVKEVMEHAVS--LHVPLITDSSWGKTW 833


>gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 903

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 99/649 (15%), Positives = 176/649 (27%), Gaps = 140/649 (21%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
             D        +      + +     V HN+     V        +       T + A  
Sbjct: 371 WLDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFPEH-GWRLEGVTM-DTALAAYL 428

Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   AL A+             G+EL              D          +    
Sbjct: 429 VKPGRRSFALDALAVEY--------LGRELAPAAASDGQLAFGADDRAEQDALMAQARAV 480

Query: 160 YCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
              GD   T  + +          E     L   +   G   D A    + Q       +
Sbjct: 481 LDLGDAFTT-RLKEVGAAELLHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQ 539

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK-----LTPQ 272
             +E  +       +    ++L+  LF E GL     T+T       +            
Sbjct: 540 AVKEAHAAVG-REFNLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHEL 598

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            + +  +R + ++  V  +  L++ + +DGR+  T     A+ TGR S      QN+P  
Sbjct: 599 PVLMLRHREQ-AKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVR 655

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAW 391
           +                              +R   +  EG   L+ AD + IE RV+A 
Sbjct: 656 TDEGRA-------------------------IRRGFVVGEGFETLMTADYSQIELRVMAH 690

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ +   ++AF +GEDL+ T  ++ F V    V  + R   K M   L            
Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGL------------ 738

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               GL+    +  +  + A                                  +   + 
Sbjct: 739 --AYGLSAFGLSQQLNIDPA------------------------------EARVLMDTYF 766

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           ++   V +  + + +    T                                 GR     
Sbjct: 767 ERFGGVRDYLHRVVEEARAT--------------------------GYTETILGRRRYLP 800

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIV 625
           D+ ++            R            +Q  + DI+   M+   KA         ++
Sbjct: 801 DLNSDN---RQRREAAERMALNAP------IQGTAADIVKVAMLRVDKALTEAKLTSRML 851

Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDEIV E    +      +    M +        PL       K +
Sbjct: 852 LQVHDEIVLEIAKGERQQVEEILRHEMANAVE--LRAPLDVSVGVGKDW 898


>gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a]
 gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a]
          Length = 884

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 98/631 (15%), Positives = 177/631 (28%), Gaps = 136/631 (21%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL----KAVGEA 115
            L +      AH+       L     L +       T + A               V   
Sbjct: 368 WLADAHQPKAAHDVKGPMLALAE-LGLTLA-GVTSDTALAAYLALPGQRSFDLADLVARY 425

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L         G   +     GE  E   D  +              + D  + R      
Sbjct: 426 LHRDLAVEPAGNGQLTLDGSGEAEESHADAVRARACLELAD-----ELDADLERR--SAA 478

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
             L   E  L  +   +   G   D      L +    E T +  +   +      +   
Sbjct: 479 VLLRDMELPLVTVLAGMERAGIAADQDHLTELQKHYGGEVTAVAAQAHEIVGRT-FNLGS 537

Query: 236 LEKLKTWLFLETGLHLEDLTET---TCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLK 290
            ++L+  LF + GL      +T   T    L+        P    +  +R   +R     
Sbjct: 538 PKQLQQILFDDLGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHR-DVARLK-TV 595

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++L+  ++  GR+  T   + A+ TGR S      QN+P  +                 
Sbjct: 596 VDSLLPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNIPIRTAEGR------------- 641

Query: 351 TSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   +   G   L+ AD + IE R++A ++G++  ++AF +GEDL+
Sbjct: 642 ------------QIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLH 689

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
               A +F +  ++V  + R   K M                    GL+           
Sbjct: 690 TFVAAEAFGLPVSEVDPELRRRIKAMSY--------------GLAYGLS----------- 724

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                  A +             A+  +   V +    +    E
Sbjct: 725 -------------------AFGLASQLGIAPDEAREHMDAYFGRFGGVRDFLRGV---VE 762

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +   +G                             GR     D+ ++ +          R
Sbjct: 763 RARRDGYTETML-----------------------GRRRYLPDLTSDNAQRRQM---AER 796

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN 643
                       +Q  + DI+   M+   +A         ++L VHDE+V E    +   
Sbjct: 797 MALNAP------IQGSAADIIKIAMLGVDRALRAGGHASRLLLQVHDELVLEIAPGEYDA 850

Query: 644 ASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
              L    MTS   +   +PL       + +
Sbjct: 851 VEALVRAEMTSA--YTMSVPLDVSVGAGRTW 879


>gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 880

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 81/603 (13%), Positives = 172/603 (28%), Gaps = 139/603 (23%)

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
             +    V A        LK    +  +       G  + +              N+   
Sbjct: 393 KNFYDISVAAYLINP---LKD---SYFVE---DIAGDYMGSACSSKSEMIGKAKLNEVLR 443

Query: 151 REAWRLFGEYCKGDVTVT--------REIFKRLEPLSSKEQELWYL--DQTINDRGYCVD 200
                    Y   +  V         +++ +       K  E+  +     + + G  VD
Sbjct: 444 FND-EKAINYFAMESYVAVHSGENILKKLSELGLDDLYKNIEMPLIYSLAKMENTGVRVD 502

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                     +  +  KL++ + S       +    ++L   LF +  L     T+   +
Sbjct: 503 EERLKKYANTLLEKIDKLEESIISKAG-ESFNINSPKQLGEILFGKLKLSGGKKTKTGYS 561

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL            +   R   ++        L   +  DGR+ GT      + TG
Sbjct: 562 TAADVLEKLALEHEIIRDILEYRQ-LTKLNSTYATGLAGYIREDGRIHGTFNQ-TITATG 619

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P  +                          +   +R   +   G   V
Sbjct: 620 RISSTEPNLQNIPVRTE-------------------------MGSKIRDIFVPKPGYVFV 654

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE RVLA ++G++  ++++ +  D++  T ++ F+V   +VT + R   K +  
Sbjct: 655 DADYSQIELRVLASLSGDEKLIESYHSAADIHAATASQVFHVPLEEVTPELRRNAKAVNF 714

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++                                  + +  
Sbjct: 715 --------------GVVYGIS------------------------------AFGLSEDLS 730

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                       + + +  V +  ++     ++                           
Sbjct: 731 ISRKEALDYINNYFKIYGGVKKFLDKQVADAKE--------------------------K 764

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
             +    GR     ++ ++     +   +             + +Q  + DI+   M+  
Sbjct: 765 GFVKTMFGRIRPIPEIKSSNFMTRSFGDR---------VAMNSPIQGSAADIMKISMLKV 815

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYES 670
            +A        +IVL +HDE++ E  + +    S L    M    S    +PL+ + +  
Sbjct: 816 DEALKESGYDANIVLQIHDELLIEVKEEEAEKVSKLVEKTMKEAVS--LKVPLEVDAHIG 873

Query: 671 KRY 673
           K +
Sbjct: 874 KTW 876


>gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17]
 gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46]
 gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
 gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46]
 gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17]
          Length = 904

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 91/598 (15%), Positives = 179/598 (29%), Gaps = 136/598 (22%)

Query: 95  CTLVLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            T + A           L  +       +L ++  ++ +  +      +         + 
Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTILRA 478

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                     +     +  T  +          E  +  +   +   G  VD+ +   L 
Sbjct: 479 RAVIDLADALDAELARIDSTALLG-------EMELPVQRVLAKMESAGIAVDLPMLTELQ 531

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265
                +          +    + +    ++L+  LF E G+     T+T   T    L S
Sbjct: 532 SQFGDQIRDAADAAYGVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQS 590

Query: 266 NKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P    +  +R   +R  V  ++ L++A+ +DGR+  T     A+ TGR S   
Sbjct: 591 LFDKTGHPFLQHLLAHR-DVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTE 647

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382
              QN+P  +                           S  +R   +  +G  +L+ AD +
Sbjct: 648 PNLQNIPIRT-------------------------DASRRIRDAFVVGDGYAELMTADYS 682

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT + R   K M   L   
Sbjct: 683 QIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL--- 739

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        GL+    +  +K                                   
Sbjct: 740 -----------AYGLSAYGLSQQLKI------------------------------STEE 758

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                 A+  +   V +    +    E+  ++G                           
Sbjct: 759 ANEQMDAYFARFGGVRDYLRAV---VERARKDGYTSTVL--------------------- 794

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             GR     ++ ++            R            +Q  + DI+   M+   KA  
Sbjct: 795 --GRRRYLPELDSSN---RQVREAAERAALNAP------IQGSAADIIKVAMIQVDKALN 843

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE++ E    +      L    M     +   +PL+      + +
Sbjct: 844 EAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGA--YPLDVPLEVSVGYGRSW 899


>gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 857

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 92/596 (15%), Positives = 180/596 (30%), Gaps = 140/596 (23%)

Query: 92  RWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
           ++    ++A              VGE  K+ S  ++E           +    + D    
Sbjct: 384 KFYDVTLIAYLLDPTHVTYNRSYVGELFKVPSIYIDEN------ASFEQNGNMIADFLLA 437

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            +  ++ L     K D+    +           EQ L  +   +   G  +D      + 
Sbjct: 438 LYTSSYELLV---KNDIEKLFK---------EVEQPLIEVLAEMEKNGISIDEENWKKVR 485

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
           + +  +  KL  E+         +    ++L   LF + G+     T+   +T   VL S
Sbjct: 486 KSMKEKEEKLLLEIYREAG-EEFNVNSPKQLSHILFDKMGMPTGKKTKTGYSTAADVLES 544

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                P    +   R   ++     L+ +   +  + +   T      + TGR S     
Sbjct: 545 LAIDYPFVKNILEYR-TLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPN 603

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384
            QN+P  +   +                          +RS  +  EG    + +D + +
Sbjct: 604 LQNIPVRTEEGK-------------------------VIRSLFVPGEGYDFFISSDYSQV 638

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA M+G++  ++AFE  ED++  T +  F V   +VT +QR+  K +   + Y   
Sbjct: 639 ELRVLAHMSGDEGLIRAFENKEDIHRRTASEVFGVPFEEVTSEQRSHAKAVNFGIIYGIS 698

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                    +  L                                              +
Sbjct: 699 -----DFGLSKQLG---------------------------------------ISRKKAD 714

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
              K + +++  + E   ++ +   +T +                          +    
Sbjct: 715 EYIKTYLKRYPGIHEFMKKMTEEARKTGK--------------------------VKTLF 748

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620
           GR     D+ +             R            +Q  + DI+   M+   +     
Sbjct: 749 GRYRDLPDINSKNF---QRRSFAERTAMNTP------IQGSAADIMKIAMIQVYEKMKKG 799

Query: 621 --GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                I+L VHDE+V E    +      +L   M S  S    + L A+ +  K +
Sbjct: 800 KYKSRILLQVHDELVVEAVKEEVEEISKLLKETMESVVS--LKVKLVADVHVGKNW 853


>gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1]
 gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1]
          Length = 925

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 104/767 (13%), Positives = 218/767 (28%), Gaps = 202/767 (26%)

Query: 4   LFIDFETRSPID------LTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPV--- 52
           + ID ET           + K  +  Y  ++   ++                 H      
Sbjct: 209 VVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENLMP 268

Query: 53  ------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-- 104
                 + + L++ LE  D+  +AHN  F+   L+A  ++ +    W  T+++       
Sbjct: 269 GNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDTLIW-DTMLIHYLCITE 327

Query: 105 --LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                 LK +               ++       +  +   +         W +   Y  
Sbjct: 328 EKGTHGLKDLA----------WLETDMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLA 377

Query: 163 GDVTVTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
            D  VT  + ++  P             +     +Y    I   G  VD      L    
Sbjct: 378 DDCDVTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSY 437

Query: 212 DVERTKLDQELESLT--------------------------------------------- 226
           + E ++L+ ++                                                 
Sbjct: 438 EKEISRLEDKMREFPEVVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSK 497

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
            G   +    ++L   LF   GL      +    +T    L      +    +V     +
Sbjct: 498 GGDKINFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFV-KVLMEFRK 556

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           A+      ++ L   ++ D  +  +    G + TGR S      Q  PR           
Sbjct: 557 ANHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRK---------- 605

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                     +   L   +  ++    +   +G  +V  D + +E R+LA +  +   + 
Sbjct: 606 ---------VNTPTLFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILAVITQDPTLID 656

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            + +G DL+    + +F VA  +V+KDQR   K ++  + YQ  A+   +     G+   
Sbjct: 657 LYRSGADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGI--- 713

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                     CE   K + ++  +VS+ 
Sbjct: 714 ------------------------------------TMSEDECEIFIKKYFKRFPKVSKW 737

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             +  +  ++                             +   +GR+    D+ +     
Sbjct: 738 IRDTKKHVKRHK--------------------------YVKTLTGRTRNLPDIDSIDQ-- 769

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVC 634
            +   +  R+           +Q    D     ++   +          I +TVHD IV 
Sbjct: 770 -SKANEAERQA------VNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSIVL 822

Query: 635 ETPDTDE-FNASMLYHLMTSNPSWAK------GLPLKAEGYESKRYR 674
           + P  +    A  + H+M +   + +       +P+ +E    + Y 
Sbjct: 823 DCPKDEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNYG 869


>gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1]
          Length = 892

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 98/662 (14%), Positives = 183/662 (27%), Gaps = 133/662 (20%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFN 85
              V   A G  D     +D        +      L + +     H++      L     
Sbjct: 344 SGDVEAVALGCVDGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEALA-GRG 402

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
            ++       T + +              + K            +    +      L   
Sbjct: 403 WEVAGLTC-DTELASYLLHPDR------RSHKFDDAVRTHLNLTLGEGEENSDQAMLDFG 455

Query: 146 NKPNHREAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           N  +     R        DV     E     E L   E  +     ++   G  VD  + 
Sbjct: 456 NDSSAESMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDIL 515

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261
             L    D   T+            + +    ++L+  LF +  +     T++   T   
Sbjct: 516 EGLRSEFDERVTRAQGAAWEAAGEKI-NLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDAD 574

Query: 262 VLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            L+   +    P    +  +R          ++ L++ +  DGR+  T     A+ TGR 
Sbjct: 575 ALAGLYEKTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTIAA-TGRL 631

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378
           S      QN+P  +                              +R   +  EG + L+ 
Sbjct: 632 SSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLS 666

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G+Q  + AF +G+D +  T +  F VAP  V+  QR+  K M   
Sbjct: 667 ADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 726

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            GL+                                  + +   
Sbjct: 727 --------------LAYGLS------------------------------AYGLSNQLKV 742

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                + +   +  +  +V E    L +  +Q    G                       
Sbjct: 743 SVGEAKELMAGYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------------- 782

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM--- 615
                 GR     D+ +             R            +Q  + D++   M+   
Sbjct: 783 ------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMVATD 827

Query: 616 -NATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
               +AG    ++L VHDE++ E    +E     +    M         +PL       +
Sbjct: 828 QKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAME--LSVPLTVSIGVGR 885

Query: 672 RY 673
            +
Sbjct: 886 SW 887


>gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2]
 gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3]
          Length = 883

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 98/662 (14%), Positives = 183/662 (27%), Gaps = 133/662 (20%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFN 85
              V   A G  D     +D        +      L + +     H++      L     
Sbjct: 335 SGDVEAVALGCVDGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEALA-GRG 393

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
            ++       T + +              + K            +    +      L   
Sbjct: 394 WEVAGLTC-DTELASYLLHPDR------RSHKFDDAVRTHLNLTLGEGEENSDQAMLDFG 446

Query: 146 NKPNHREAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           N  +     R        DV     E     E L   E  +     ++   G  VD  + 
Sbjct: 447 NDSSAESMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDIL 506

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261
             L    D   T+            + +    ++L+  LF +  +     T++   T   
Sbjct: 507 EGLRSEFDERVTRAQGAAWEAAGEKI-NLSSPKQLQGVLFEKLDMPKTRRTKSGYTTDAD 565

Query: 262 VLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            L+   +    P    +  +R          ++ L++ +  DGR+  T     A+ TGR 
Sbjct: 566 ALAGLYEKTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTIAA-TGRL 622

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378
           S      QN+P  +                              +R   +  EG + L+ 
Sbjct: 623 SSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLS 657

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++G+Q  + AF +G+D +  T +  F VAP  V+  QR+  K M   
Sbjct: 658 ADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 717

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
                            GL+                                  + +   
Sbjct: 718 --------------LAYGLS------------------------------AYGLSNQLKV 733

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                + +   +  +  +V E    L +  +Q    G                       
Sbjct: 734 SVGEAKELMAGYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------------- 773

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM--- 615
                 GR     D+ +             R            +Q  + D++   M+   
Sbjct: 774 ------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMVATD 818

Query: 616 -NATKAG--YDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
               +AG    ++L VHDE++ E    +E     +    M         +PL       +
Sbjct: 819 QKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAME--LSVPLTVSIGVGR 876

Query: 672 RY 673
            +
Sbjct: 877 SW 878


>gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 867

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 101/679 (14%), Positives = 182/679 (26%), Gaps = 178/679 (26%)

Query: 33  FAFGFDDHP--------VELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
             F  +D              D    D      L   +  +   +VAH+      V    
Sbjct: 326 VGFALEDDTLGLASNDSAIWVDLTDLDENSFNALDTFI--STKKVVAHDVK--PQVHAWV 381

Query: 84  FNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                     + T + A          +L  +   L +                      
Sbjct: 382 ERGFTQPRPIMDTELAAYLLAPDARGYSLADMASDLGV---------------------- 419

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQ 190
                     R+     GE       VT  ++ RL     +                +  
Sbjct: 420 -----VLEEDRDLLTDVGEQLGHRAWVTVALYPRLRQDLERNHLQDVLDGIEIPTQEILA 474

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  +D ++ + L    +    +   E  +     V +    ++L+T LF E  + 
Sbjct: 475 RMEIAGIAIDQSVLNELITEFEAAAQQSASEAYASIGHEV-NLNSPKQLQTVLFDELNMP 533

Query: 251 LEDLTET---TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
               T+T   T    L+    K   P    +  +R R        +  L + +  DGR+ 
Sbjct: 534 KTKRTKTGYTTDADSLADLLVKTQHPFLEHLLAHRDRTKLKQT--VVGLQKVVADDGRIH 591

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T     A+ TGR S      QN+P  + +                            +R
Sbjct: 592 TTYLQTVAA-TGRLSSKDPNLQNIPVRTDAGRR-------------------------IR 625

Query: 366 SCVIA--SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           S   A   +G + L+  D + IE R++A ++G++  ++AF+ GEDL+     + F V   
Sbjct: 626 SVFQAAQDDGYESLMSVDYSQIEMRIMAHLSGDEALIQAFKDGEDLHRYVAGQVFEVPIE 685

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT  QR+  K M   L                GL+                        
Sbjct: 686 DVTDQQRSKVKAMSYGLV--------------YGLS------------------------ 707

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                     + +          +   +  +   V E  +++ +                
Sbjct: 708 ------AYGLSRQLGIPTGEASALMDDYFARFGAVKEYLDQVVEEAR------------- 748

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                 GR      + ++R           R            +
Sbjct: 749 -------------GRGYTETMYGRRRYLPQLRSDR---RQLREMAERAALNAP------I 786

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNP 655
           Q  + DI+   M     A         ++L VHDEI+ E    +      L    M+   
Sbjct: 787 QGSAADIMKIAMKRVDDALREAELKSRMLLQVHDEIILEIWAGEAIQVEKLVRENMSQAA 846

Query: 656 SWAKGLPLKAEGYESKRYR 674
                +PL         ++
Sbjct: 847 D--LSVPLDVNVGVGPNWQ 863


>gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1]
 gi|737486|prf||1922368A DNA polymerase I
          Length = 921

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 84/528 (15%), Positives = 147/528 (27%), Gaps = 127/528 (24%)

Query: 165 VTVTREIFKRLEPLSSKEQELWY---------LDQTINDRGYCVDVALAHTLNQIVDVER 215
             +T  + + L PL    +   Y         +   +  RG  VD     TL+    V  
Sbjct: 498 AAITGHLVRELPPLLDDARRKMYDEMEKPLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRL 557

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLT 270
             L+ ++     G     R  ++L+T L+ +  L     T+     +T    L   +   
Sbjct: 558 ADLESQIHE-YAGEEFHIRSPKQLETVLYDKLELASSKKTKLTGQRSTAVSALEPLRDAH 616

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    V   R    +     L+ +   +N       T     A  TGR S      QN+P
Sbjct: 617 PIIPLVLEFR-ELDKLRGTYLDPIPNLVNPHTGRLHTTFAQTAVATGRLSSLNPNLQNIP 675

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
             S    E                         +R   IA +G  L+ AD + IE R+LA
Sbjct: 676 IRSELGRE-------------------------IRKGFIAEDGFTLIAADYSQIELRLLA 710

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +A +    +AF  G D++  T A+   +  A V  +QR   K +               
Sbjct: 711 HIADDPLMQQAFVEGADIHRRTAAQVLGLDEATVDANQRRAAKTVN-------------- 756

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G++                                  + +            + +
Sbjct: 757 FGVLYGMS------------------------------AHRLSNDLGIPYAEAATFIEIY 786

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              +  +    N                          +   +      +    GR    
Sbjct: 787 FATYPGIRRYIN------------------------HTLDFGRTHG--YVETLYGRRRYV 820

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----KAGYDIVL 626
             + +             R            +Q  + DI+   M+         G  ++L
Sbjct: 821 PGLSSRN---RVQREAEERLAYNMP------IQGTAADIMKLAMVQLDPQLDAIGARMLL 871

Query: 627 TVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE++ E P       + L   +M +       +PL  E      +
Sbjct: 872 QVHDELLIEAPLDKAEQVAALTKKVMENVVQ--LKVPLAVEVGTGPNW 917


>gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4]
 gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4]
          Length = 899

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 99/674 (14%), Positives = 189/674 (28%), Gaps = 142/674 (21%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           A D   +  A           D     P   Q L+  L +  V    H++      L   
Sbjct: 338 AGDAQTVTIAAA--GGASAHVDLAAIGPDDEQALQGWLGDDAVHKAVHDAKAATHAL--- 392

Query: 84  FNLDIPIHRWICTL---VLARSNGLPSALKAVGE----ALKLSSQKMEEGKELIARFCKG 136
              D+ +     T+   + A           + E     L+    + E  ++ ++   + 
Sbjct: 393 MGRDLRLGGV--TMDVALAAYLVRPGQRSYGLAELFQRHLRRELPEAEAAEKQLSLLDEV 450

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
           +  E            A  +     + DV +  ++      ++  E  L  +   +   G
Sbjct: 451 DDAEAAQRAADAAATRARAVVDLAERLDVELE-QVHGATL-MAEMELPLVPVLARMESIG 508

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-- 254
             VD +  + L         +  +   +   G   +    ++L+  LF   G+       
Sbjct: 509 IAVDASALNGLRDDFADRGRQAAEAAYAAIGGEQINLGSPKQLQVVLFETLGMPKTKKTK 568

Query: 255 -----TETTCQRVLSSNKKLTPQAIQV--FNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
                     + +L+     TP    +         ++     +  L++ +  D R+  T
Sbjct: 569 TGYTTDAKALEELLAKETGDTPGRAFLEALLLHRETTKMRTT-VEGLIKTIGDDRRIHTT 627

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                A+ TGR S      QN+P  +                              +R  
Sbjct: 628 FNQTVAA-TGRLSSTDPNLQNIPVRTEDGRR-------------------------IRGS 661

Query: 368 VIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            +  EG   L+ AD + IE RV+A ++G+   ++AF TGEDL+    +R+F V   QVT 
Sbjct: 662 FVVGEGYDCLLTADYSQIEMRVMAHLSGDAGLIEAFRTGEDLHSFVGSRAFGVPIDQVTP 721

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K M   L                GL+    A                       
Sbjct: 722 ELRRRVKAMSYGL--------------AYGLSAFGLAAQ--------------------- 746

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                                +A+  +   V +    + +   +                
Sbjct: 747 ---------LGISQGEAREQMEAYFSRFGGVRDYLQAVVEQARK---------------- 781

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                     +       GR     ++ ++            R            +Q  +
Sbjct: 782 ----------DGYTETLFGRRRYLPELNSDN---RLKRENAERAALNAP------IQGTA 822

Query: 607 RDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659
            DI+   M+              ++L VHDE+V E    +      ++   M S      
Sbjct: 823 ADIIKAAMLKVDADLTARGLKSRLLLQVHDELVLEVAPGELDEVRGLVVDRMYSAIE--L 880

Query: 660 GLPLKAEGYESKRY 673
            +PL         +
Sbjct: 881 DVPLDVSTGTGPNW 894


>gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi]
 gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi]
          Length = 858

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 87/650 (13%), Positives = 179/650 (27%), Gaps = 146/650 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            +  + +  +   +          +   L +  V  + HN    R +  A   +   +  
Sbjct: 327 LSLSYSESNIFYIEQDSIQDALITINSTLLSNGVLKIIHNIKEIRKIFPATEKM---LDS 383

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
               ++++       +L        + +       E    F             +   +E
Sbjct: 384 VDDLMIMSY------SLDTGKHDHSIPNIVAHNLSENAEIFSAKTLIAIHEKLKQRLFQE 437

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
               F  Y + D                  + L  +   +   G  +++     L+    
Sbjct: 438 KL--FTIYERFD------------------KPLMKVIFDMEKNGILLNIQKLQELSDKFQ 477

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNK 267
                L+ E+ +L      +    ++L   LF + GL+ +  ++      T   VL + +
Sbjct: 478 QVIAVLEDEIYNLAG-ERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALE 536

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           +   +      N    S+      + L++ ++       T     A+ TGR S      Q
Sbjct: 537 EEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQ 596

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  S                              +R   IA +G K++ AD + IE R
Sbjct: 597 NIPIRSEEGN-------------------------LIRQAFIAPKGHKIISADYSQIELR 631

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +A      +AF   +D++  T  + F V   ++ +  R   K +            
Sbjct: 632 LLAHVANVAAFKEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSIN----------- 678

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A                                            
Sbjct: 679 ---FGIIYGISPFGLAKR------------------------------LGITIAEAAEYI 705

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             +   +  +        +A      +G                             GR 
Sbjct: 706 NYYFSCYPEIKVYM---EKAVSIARLHGYVETL-----------------------FGRR 739

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-TKAGY-DIV 625
              RD+ N   Y+        R             Q  + DI+    +    +     I+
Sbjct: 740 CFVRDINNTIPYVRQF---AERAAINAPL------QGTAADIIKRATIQLFDQLKVGKII 790

Query: 626 LTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           L VHDE++ E   +  +  A ++  +M +       +PL+ E      + 
Sbjct: 791 LQVHDELLVEVEDEKVQETAKLMKDIMENAIE--ISVPLEVEIKVGDNWG 838


>gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
 gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I
 gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C]
 gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389]
          Length = 871

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/639 (13%), Positives = 184/639 (28%), Gaps = 150/639 (23%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
             +     ++   L +  +  + ++      +LK   +    I       ++  +     
Sbjct: 368 ADNEWFTDIIFNLLTDQSIKKITYSLK---PLLKFYASRAQQITAIEDLELMNYALSAGL 424

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
             K + EA         E +  I    K         +      +  + F  Y + D+ V
Sbjct: 425 PQKNLFEA--------VEKEATIEEAAKIVVGFIDLYQQTILELKDNKAFRIYKEIDLPV 476

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                               +   +   G  VD    + L+     E  KL++E+  L+ 
Sbjct: 477 CF------------------VIDKMEKAGIKVDANYLNQLSSEFGAEILKLEEEIFVLSG 518

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    ++L   LF +  L     +      +T   +L    +       +     +
Sbjct: 519 MK-FNIGSPKQLGEILFEKMQLPFGKTSAKANSYSTGADILEKLSEQGYPIADLLLRWRQ 577

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++      ++L + +++  R   T     ++ TGR S      QN+P  S    +    
Sbjct: 578 LTKLKNTYTDSLPKQIDNITRRIHTTFLQTSTTTGRLSSQEPNLQNVPIRSGEGNK---- 633

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R   +A +G KL+ AD + IE R+L+ +A  +   +AF
Sbjct: 634 ---------------------IRQAFVAEQGYKLISADYSQIELRILSHIADIKALKQAF 672

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
              +D++  T  + FN+   ++T + R   K +                    G++    
Sbjct: 673 INKDDIHTQTACQIFNLQKEELTSEHRRKAKAIN--------------FGIIYGIS---- 714

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                         A +     T      K +  ++  V E   
Sbjct: 715 --------------------------AFGLAKQLNVSNTEAAEYIKKYFAEYKGVQEYME 748

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                 +                           N  +    GR      + + R     
Sbjct: 749 ATKSFAQ--------------------------ANGYVTDFFGRKCFVPLINDKR----- 777

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDEIVCET 636
             +   R            +Q  + DI+   M      +   K    +VL +HDE++ E 
Sbjct: 778 LKQFAERAAINAP------IQGTNADIIKIAMTLLDREIEKRKLKTRLVLQIHDELLFEA 831

Query: 637 PDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           P  +      ++  +M +  S    +P+  E      + 
Sbjct: 832 PIDEIETIMPIIKQIMEN--STNMDVPIITEIRAGNNWM 868


>gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
 gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028]
          Length = 861

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/564 (18%), Positives = 175/564 (31%), Gaps = 129/564 (22%)

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---- 183
           EL A     E      +R +    +   +  E     V     +       S        
Sbjct: 404 ELAAYLLSPEERNYSLERIRDGLGDEIDVHRENHGQAVLAVGRLLHARLAGSELLGLLQD 463

Query: 184 ---ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
               L  +   +  RG  +D A  H    +V  E  +L + +         + R  ++L 
Sbjct: 464 LELPLTEVLVRMQKRGIRIDAARFHDFLGMVQAELDRLTRTIHEQAG-EEFNIRSSQQLA 522

Query: 241 TWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
             LF   GL  +  T     +T   VL       P    V   RM   +     L  + +
Sbjct: 523 EVLFSRLGLACKQKTPGGAQSTSSSVLEGLAAEHPIVADVLEFRMY-EKLRSTYLEPMPQ 581

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
             + +GR+  T   L A+ TGR S      QN+P                          
Sbjct: 582 LADKNGRIHTTFNQL-ATATGRLSSSNPNLQNIPIRGA---------------------- 618

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +   +RSC +AS G +LV AD + IE RVLA M+G+Q   +AF  G+D++  T    
Sbjct: 619 ---LGPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHARTAGIL 675

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F+    +V+ D+R   K +                    G+                   
Sbjct: 676 FDTT--EVSADERRKAKTINF--------------GLLYGMGPQ---------------- 703

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                         +   E        +     +  K SRV E + E+    +       
Sbjct: 704 --------------KLGRELGISLKEAKEFIAVYFSKLSRVREFYEEIEAGAKS------ 743

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                  +   +GR  +  ++ +  + +     Q  R       
Sbjct: 744 --------------------LGYVTTLAGRRRMLPEINSRNTNMAQ---QARRMAI---- 776

Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYH 649
               +VQ  + DI+ + M+   K       G  ++L +HDE++ E P          +  
Sbjct: 777 --NTVVQGSAADIIKKAMLEVDKSPVIGELGASLILQIHDELLLEAPAARAREVGEAVAG 834

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
           +M S   ++  +PL  +      +
Sbjct: 835 IMASV--YSLSVPLVVDWGVGDDW 856


>gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
 gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56']
          Length = 537

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/522 (16%), Positives = 150/522 (28%), Gaps = 79/522 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVM 53
           L +D    S   ++            V   A   +          H             +
Sbjct: 68  LALDVLATSREPMS----------AHVCGVALACEPGQAVYVPLGHRYLGAPAQLSMSDI 117

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKA 111
             V+   L + ++  V H+  F   +L     + + +     T++ +          L  
Sbjct: 118 DAVMGPLLADPELPKVGHDVKFCEVILLRH-RIGL-VGVSFDTMLASYLLDPEGKNQLHE 175

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E         E G ++               R              Y      V   +
Sbjct: 176 LAER--------ELGAKMQTLDEVAPKRRGQAQRALDE--IELGEASSYGAAFADVALSL 225

Query: 172 FKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             RL P              E  L  +   +   G  VD      L   +  E   L+Q+
Sbjct: 226 TDRLRPRLRVEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQK 285

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
              +    + +    ++L+  LF E  L  +  T+   +T   VL +  +  P    V  
Sbjct: 286 AREIVGHDI-NLASPKQLEAVLFDELKLRSQRKTKTGRSTDADVLEALSEEHPFPGVVLE 344

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R   ++     ++ L   +N       T      + TGR S      QN+P  +     
Sbjct: 345 HR-AIAKLKGTYVDALPRLVNPGTGRIHTRWGQAVAATGRLSSQDPNLQNIPIRTELGR- 402

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R   +A  G  +V AD + IE RVLA ++ +   
Sbjct: 403 ------------------------MIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVL 438

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           + AF  G+D++V T    F V  A VT + R   K +   + Y  G  A         L+
Sbjct: 439 VDAFRAGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESAL-----AKRLD 493

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           ++        ++       A       +              
Sbjct: 494 ISRAEAARFIDACSRICAAATACAALRRSASRRTPPSRGRRR 535


>gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500]
          Length = 1411

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 105/790 (13%), Positives = 202/790 (25%), Gaps = 210/790 (26%)

Query: 5    FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELWDC--VHDPVMPQV 56
              D E    +DL K           +I F+        F        D        + +V
Sbjct: 707  ACDTE-VVDLDLKKQSP---IGHGRIICFSVYCGPDIDFGTGSRLWVDTMGEQGNEILEV 762

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------PSALK 110
             +   E+  +  V HN  F+R +     N+D+       TL +AR            +L+
Sbjct: 763  FRPYFESESIYKVWHNYGFDRHIFYNH-NIDVKGFG-GDTLHMARLWDAARNGRGGYSLE 820

Query: 111  AVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVT 166
             + + L     +S K   GK  I           +        H +    + EY   D  
Sbjct: 821  GLSKELLDNHKTSIKDLFGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETWIEYSSLDAE 880

Query: 167  VTREIFKRLEPLSSK----------------EQELWYLDQTINDRGYCVDVALAHTLNQI 210
            +T  + + L+                      +   +L   +  RG  VD+    T+  +
Sbjct: 881  LTWNLRENLQAKLQNMVWMNDTNMWDFYHNLWRPFGHLLTDMERRGMKVDIEHLKTVEGV 940

Query: 211  VDVERTKLDQELESLT-------------------------------------------- 226
               +        +                                               
Sbjct: 941  ATKDIQDNMDAFQQWAVKYCPNAKYMNPSSDAQIQQLLFAPTKNVKTKEEMPLEREFETE 1000

Query: 227  ---YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK------------ 267
                 +    +  +K++ +L    GL     T +         L                
Sbjct: 1001 NTEGFIEEGKKKPKKMRPFLLSGLGLPFGSHTASGWPAVDSASLRDLAGNPSKGKYGKIF 1060

Query: 268  ----KLTPQAIQVFNNRMRASR-------------SAVLKLNTLVEAMNSDGRLRGTLQF 310
                  +    +     + AS+                  +  L +  +S+ R+  ++  
Sbjct: 1061 NHFKDKSEDKEKGEQEGIEASKAITSLLEIGSVGTLLSSFIIPLQKLCDSNHRVHTSVNV 1120

Query: 311  LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
               + TGR S      QN P                          L+     +R     
Sbjct: 1121 N--TETGRLSSKRPNLQNQP-------------------------ALEKDRYKIRKAFTC 1153

Query: 371  SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
              G  LVVAD   +E R+LA +   +  + AF+ G D +  T                + 
Sbjct: 1154 EPGNTLVVADYGQLELRLLAHITNCRSMINAFKIGGDFHSRTAMGM--------YPHVKE 1205

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
                 ++ L +              G        L  +  A        NF     +   
Sbjct: 1206 AVDRGDVLLEWD-------------GDGEPPKPLLKDSFGAERRKAKTLNFSIAYGKTAH 1252

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
              + +        +     W      V     +  Q                        
Sbjct: 1253 GLSKDWGVTLKEAQETLDRWYSDRPEVLLWQRKTIQIA---------------------- 1290

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                  +       GR  +  D+ N    +   +    R             Q  + DI+
Sbjct: 1291 ----NTHKWTRTLMGRYRMLPDIDNPAKGMKGHS---ERASINTPL------QGGAADIV 1337

Query: 611  AEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663
             + M+         + G+ +++ +HDE++ E P+     A  +   LM++  +    + L
Sbjct: 1338 MKAMLMIEEDKRLKELGFQLIMQIHDELILEGPEQHAKEAREIVMRLMSNPLNTPLLVEL 1397

Query: 664  KAEGYESKRY 673
              +   +K +
Sbjct: 1398 VVDCRFAKTW 1407


>gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032]
 gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032]
          Length = 899

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/639 (15%), Positives = 179/639 (28%), Gaps = 129/639 (20%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---P 106
           D      L   L +     V H+S        A     +       T + A         
Sbjct: 370 DESDEAALAGWLADETRPKVLHDSKPAVLAFAAH-GWTLAGIA-RDTQIAAYLARPDQRS 427

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             L  +         +  +  +       G   +   ++N   H             D  
Sbjct: 428 YDLTDLALRYLHRELR-VDVPDDGQLTLDGLGGDGEAEQNLMLHA--RATLDLADAIDAE 484

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           ++R+  +    ++  E  L  +   +   G   D      L      E     Q   ++ 
Sbjct: 485 LSRDGEQSARLMAGVELPLMRVLAGMERVGIAADTDYLSELEAHFAAEVKAAAQAAYAVI 544

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN-KKLTPQAIQVFNNRMR 282
                +    ++L+  LF E  L      +T   T    L     +     +        
Sbjct: 545 G-REFNLGSPKQLQEILFGELNLPKTKKIKTGYTTDADALQWLYAQTEHPLLHHLLRHRD 603

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            +R     ++ L+++++ DGR+  T     A+ TGR S      QN+P  +         
Sbjct: 604 VARLKST-VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRTEEGRR---- 657

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKA 401
                                +R   +  EG + L+ AD + IE R++A ++G++  ++A
Sbjct: 658 ---------------------IRRAFVVGEGYECLLTADYSQIEMRIMAHLSGDEALIEA 696

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F +G D +  T +  F VA A+VT DQR   K M                    GL+   
Sbjct: 697 FNSGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNY--------------GLAYGLSAFG 742

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            +                                          + + +      V +  
Sbjct: 743 LSQQ------------------------------LGITAEEARGLMEVYFAGFGGVRDYL 772

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
            E+     Q                          +       GR     D+ ++     
Sbjct: 773 QEVVARARQ--------------------------DGYTSTILGRRRYLPDLVSDN---R 803

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
                  R            +Q  + DI+   M++   A         ++L VHDE+V E
Sbjct: 804 QRREMAERMALNAP------IQGSAADIIKVAMLHVDTALRDAGLRSRMLLQVHDELVFE 857

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               +      L    M     +   +PL+    E + +
Sbjct: 858 VAPGERATLEELVRREMGGA--YPLSVPLEVSVGEGRDW 894


>gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/624 (14%), Positives = 183/624 (29%), Gaps = 129/624 (20%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
           + +K+ L    +  V ++      +L    F+    I      ++ +       +   + 
Sbjct: 346 KAIKDLLTLQSIQKVVYDLK---NILHKVDFDEANQIKNCNDVMLASYVLDSTRSSYDL- 401

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                        + L   +   +      +R          L+ E  K       ++  
Sbjct: 402 -------------ETLFISYLNTDIAAIKENRWAGATVLLRNLWDELSKL-----IDLNS 443

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                 S E  L  +   +   G+ VD        + ++ +  KL+ ++  +      + 
Sbjct: 444 AQYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAG-EWFNI 502

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF +  L +   T+   +T   VL            + + RM  ++     
Sbjct: 503 NSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMY-TKILTTY 561

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              LV+A+N       T      + TGR +      QN+P      +             
Sbjct: 562 CQGLVQAINPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGK------------- 608

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   +  EG  L+ AD + IE R+LA ++ ++  + AF+   D++ 
Sbjct: 609 ------------LIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHS 656

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T A  F V  +QVT   R+  K +   + Y            +  + ++        N 
Sbjct: 657 QTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGIS-----DYGLSRDIKISRKEAAEFINR 711

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             E++   + +   + +   E+           +R  K  +  +  +        +    
Sbjct: 712 YFEKYPKVKEYLDNVVKFARENGFVLTIFNR--KRYIKDIKSTNKNLRNY---AERIAMN 766

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
           +   G A    K   +                      VY+ +  N              
Sbjct: 767 SPIQGSAADIMKIAMI---------------------RVYKKLKENNLKSR--------- 796

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649
                             I+               L VHDE++ E+P  ++     +   
Sbjct: 797 ------------------II---------------LQVHDELLIESPYEEKEIVKEIVKS 823

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
            M +       +PL  E  E   +
Sbjct: 824 EMENAV--LLKVPLVVEVKEGSNW 845


>gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 907

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 102/647 (15%), Positives = 183/647 (28%), Gaps = 143/647 (22%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +D        +      L +     V HN+     V        +       T + A  
Sbjct: 375 WFDPSQLDEADENAFATWLADPAKPKVLHNAKGVMRVFAEH-GWTVEGVSM-DTALAAYL 432

Query: 103 NGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                   AL A+  E L    +        +A                    +    FG
Sbjct: 433 VKPGRRSFALDALSLEYLGRELEPAATADGQLAFGADEGAEADALMVQARAILDLGEAFG 492

Query: 159 EYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           E           + +          E     L   +   G   D A    + Q+      
Sbjct: 493 E----------RLKEVGSADLLRDMELPTSALLARLERHGIAADKAHLEAMEQMFAGAVQ 542

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQ 272
           +  +E  +       +    ++L+  LF E GL     T+T       +      +   +
Sbjct: 543 QAVKEAHAAAGH-EFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTDNE 601

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +       ++  V  +  L++ + +DGR+  T     A+ TGR S      QN+P  
Sbjct: 602 LPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVR 659

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAW 391
           +                              +R   +  EG + L+ AD + IE RV+A 
Sbjct: 660 TDEGRA-------------------------IRRGFVVGEGFESLMTADYSQIELRVMAH 694

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ ++  ++AF +GEDL+ T  ++ F V  + V  + R   K M   L Y          
Sbjct: 695 LSEDEGLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAY---------- 744

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               GL+    +  +  ++                                   +   + 
Sbjct: 745 ----GLSAFGLSQQLNIDAG------------------------------EARALMDTYF 770

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           ++   V +    L +A ++    G                             GR     
Sbjct: 771 ERFGGVRDY---LRRAVDEARATGYTETL-----------------------FGRRRYLP 804

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
           D+ ++            R            +Q  + DI+   M+N  +A         ++
Sbjct: 805 DLNSDN---RQRRETAERMALNAP------IQGTAADIVKIAMLNVDRALQEANLKSRML 855

Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA---EGY 668
           L VHDEIV E    +      L    M S        PL     +G 
Sbjct: 856 LQVHDEIVLEIAPGERAKTEELVRREMASAVQ--LRAPLDVSVGDGG 900


>gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/624 (14%), Positives = 183/624 (29%), Gaps = 129/624 (20%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
           + +K+ L    +  V ++      +L    F+    I      ++ +       +   + 
Sbjct: 346 EAIKDLLTLQSIQKVVYDLK---NILHKVDFDEANQIKNCNDVMLASYVLDSTRSSYDL- 401

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                        + L   +   +      +R          L+ E  K       ++  
Sbjct: 402 -------------ETLFISYLNTDIAAIKENRWAGATVLLRNLWDELSKL-----IDLNS 443

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                 S E  L  +   +   G+ VD        + ++ +  KL+ ++  +      + 
Sbjct: 444 AQYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAG-EWFNI 502

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF +  L +   T+   +T   VL            + + RM  ++     
Sbjct: 503 NSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMY-TKILTTY 561

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              LV+A+N       T      + TGR +      QN+P      +             
Sbjct: 562 CQGLVQAINPATGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGK------------- 608

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   +  EG  L+ AD + IE R+LA ++ ++  + AF+   D++ 
Sbjct: 609 ------------LIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHS 656

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T A  F V  +QVT   R+  K +   + Y            +  + ++        N 
Sbjct: 657 QTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGIS-----DYGLSRDIKISRKEAAEFINR 711

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             E++   + +   + +   E+           +R  K  +  +  +        +    
Sbjct: 712 YFEKYPRVKEYLDNVVKFARENGFVLTIFNR--KRYIKDIKSTNKNLRNY---AERIAMN 766

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
           +   G A    K   +                      VY+ +  N              
Sbjct: 767 SPIQGSAADIMKIAMI---------------------RVYKKLKENNLKSR--------- 796

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649
                             I+               L VHDE++ E+P  ++     +   
Sbjct: 797 ------------------II---------------LQVHDELLIESPYEEKEIVKEIVKS 823

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
            M +       +PL  E  E   +
Sbjct: 824 EMENAV--LLKVPLVVEVKEGSNW 845


>gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus]
          Length = 849

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/624 (14%), Positives = 182/624 (29%), Gaps = 129/624 (20%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVG 113
           + +K  L    +  V ++      +L    F+    I      ++ +       +   + 
Sbjct: 346 EAIKHLLTLQSIQKVVYDLK---NILHKVDFDETNQIKNCDDVMLASYVLDSTRSSYDL- 401

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                        + L   +   +      +R          L+ E  K       ++  
Sbjct: 402 -------------ETLFISYLNTDIAAIKENRWAGATVLLRNLWDELSKL-----IDLNS 443

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                 S E  L  +   +   G+ VD        + ++ +  KL+ ++  +      + 
Sbjct: 444 AQYVYESIEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAG-EWFNI 502

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF +  L +   T+   +T   VL            + + RM  ++     
Sbjct: 503 NSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMY-TKILTTY 561

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              LV+A+N       T      + TGR +      QN+P      +             
Sbjct: 562 CQGLVQAINPVTGRIHTNFIQTGTATGRLASAEPNLQNIPVKYDEGK------------- 608

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   +  EG  L+ AD + IE R+LA ++ ++  + AF+   D++ 
Sbjct: 609 ------------LIRKAFVPDEGYMLIDADYSQIELRILAHISEDERLINAFKNNLDIHS 656

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T A  F V  +QVT   R+  K +   + Y            +  + ++        N 
Sbjct: 657 QTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGIS-----DYGLSRDIKISRKEAAEFINR 711

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             E++   + +   + +   E+           +R  K  +  +  +        +    
Sbjct: 712 YFEKYPKVKEYLDNVVKFARENGFVLTIFNR--KRYIKDIKSTNKNLRNY---AERIAMN 766

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
           +   G A    K   +                      VY+ +  N              
Sbjct: 767 SPIQGSAADIMKIAMI---------------------RVYKKLKENNLKSR--------- 796

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649
                             I+               L VHDE++ E+P  ++     +   
Sbjct: 797 ------------------II---------------LQVHDELLIESPYEEKEIVKEIVKS 823

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
            M +       +PL  E  E   +
Sbjct: 824 EMENAV--LLKVPLVVEVKEGSNW 845


>gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans]
          Length = 817

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/650 (13%), Positives = 179/650 (27%), Gaps = 146/650 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            +  + +  +   +          +   L +  V  + HN    R +  A   +   +  
Sbjct: 286 LSLSYSESNIFYIEQDSIQDALITINSTLLSNGVLKIIHNIKEIRKIFPATEKM---LDS 342

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
               ++++       +L        + +       E    F             +   +E
Sbjct: 343 VDDLMIMSY------SLDTGKHDHSIPNIVAHNLSENAEIFSAKTLIAIHEKLKQRLFQE 396

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
               F  Y + D                  + L  +   +   G  +++     L+    
Sbjct: 397 KL--FTIYERFD------------------KPLMKVIFDMEKNGILLNIQKLQELSDKFQ 436

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSNK 267
                L+ E+ +L      +    ++L   LF + GL+ +  ++      T   VL + +
Sbjct: 437 QVIAVLEDEIYNLAG-ERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALE 495

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           +   +      N    S+      + L++ ++       T     A+ TGR S      Q
Sbjct: 496 EEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQ 555

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N+P  S                              +R   IA +G K++ AD + IE R
Sbjct: 556 NIPIRSEEGN-------------------------LIRQAFIAPKGHKIISADYSQIELR 590

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA +A      +AF   +D++  T  + F V   ++ +  R   K +            
Sbjct: 591 LLAHVANVAAFKEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSIN----------- 637

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A                                            
Sbjct: 638 ---FGIIYGISPFGLAKR------------------------------LGITIAEAAEYI 664

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             +   +  +        +A      +G                             GR 
Sbjct: 665 NYYFSCYPEIKVYM---EKAVSIARLHGYVETL-----------------------FGRR 698

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-TKAGY-DIV 625
              RD+ N   Y+        R             Q  + DI+    +    +     I+
Sbjct: 699 CFVRDINNTIPYVRQF---AERAAINAPL------QGTAADIIKRATIQLFDQLKVGKII 749

Query: 626 LTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           L VHDE++ E   +  +  A ++  +M +       +PL+ E      + 
Sbjct: 750 LQVHDELLVEVEDEKVQETAKLMKDIMENAIE--ISVPLEVEIKVGDNWG 797


>gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 906

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 98/649 (15%), Positives = 181/649 (27%), Gaps = 140/649 (21%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +D        +      L +     V HN+     V        I       T + A  
Sbjct: 374 WFDPTEVDEEDERAFAAWLADPARPKVLHNAKGAMRVFAEH-GWTIEGVTM-DTALAAYL 431

Query: 103 NGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-Y 160
                 +       L+           L          +           EA  L  +  
Sbjct: 432 VKPGRRSFDLDALTLEY----------LGRELAPPAAADGQLAFGADEEAEADALMVQAR 481

Query: 161 CKGDV--TVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              D+    T  + +          E     L   +   G   D A   ++ Q+      
Sbjct: 482 AILDLGEAFTGRLKEVGAADLLGDMELPTSALLARMERHGIAADRAHLESMEQMFAGAVQ 541

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQ 272
           +  +E  +       +    ++L+  LF E GL     T+T       +      +   +
Sbjct: 542 QAVREAHAAAGH-EFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTENE 600

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +       ++  V  +  L++ + +DGR+  T     A+ TGR S      QN+P  
Sbjct: 601 LPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVR 658

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAW 391
           +                              +R   +  EG + L+ AD + IE RV+A 
Sbjct: 659 TDEGRA-------------------------IRRGFVVGEGYESLMTADYSQIELRVMAH 693

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++ +   ++AF +GEDL+ T  ++ F V  + V  + R   K M   L            
Sbjct: 694 LSEDAGLIEAFTSGEDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGL------------ 741

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
               GL+    +  +   +A                                  + +A+ 
Sbjct: 742 --AYGLSAFGLSQQLGIEAA------------------------------EARTLMEAYF 769

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           ++   V +    + +    T                                 GR     
Sbjct: 770 ERFGGVRDYLRRVVEEARAT--------------------------GYTATLFGRRRYLP 803

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
           D+ ++            R            +Q  + DI+   M+   +A         ++
Sbjct: 804 DLNSDN---RQRREAAERMALNAP------IQGTAADIVKIAMLRVGEALRAAGLASRML 854

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDEIV E    +      +L   MT+        PL       + +
Sbjct: 855 LQVHDEIVLEIAPGERERVEALLRREMTTAVHLKA--PLDVSVGVGRDW 901


>gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 462

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/560 (13%), Positives = 147/560 (26%), Gaps = 120/560 (21%)

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-----------S 180
              K         +  P      +   +Y   D  +T  +   L P              
Sbjct: 1   ETMKYVDLVGKGAKQIPFSHVGVQEATQYAAEDADITLRLHCVLAPKLLAEPILERVYRE 60

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            E  L  + + I   G  +D    +  +  +        Q+   L      +    ++L+
Sbjct: 61  IEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMDLAGRH-FNLDSPKQLQ 119

Query: 241 TWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
             LF E  L           +T +  L +          +   R   ++        L E
Sbjct: 120 VLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVILEYR-SLAKLRNTYTEKLPE 178

Query: 297 AMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
            ++   GR+       GA+ TGR S      QN+P  +                      
Sbjct: 179 MIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDDGRR----------------- 220

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R   +A  G+KL+  D + IE R++A ++G+   + AFE+G D++    A 
Sbjct: 221 --------IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAE 272

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F     +VT ++R   K +   L Y   A           L ++            + +
Sbjct: 273 VFGRGIDEVTPNERRAAKAINFGLIYGMSA-----FGLARQLGISRGEAQDYIALYFDRF 327

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN-ELHQAFEQTIEN 534
               +F    ++   +    +   G       + +    +  ++       +A       
Sbjct: 328 SGVRDFMENTRQQARDRGYVETVFGR------RLYLNSIASGNQTQRAGAERAAINAPMQ 381

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G A    KR  V +                                        R     
Sbjct: 382 GTAADIIKRAMVAVDGWLGVGG-----------------------------HRERA---- 408

Query: 595 GKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTS 653
                              ++               E+V E  +         +   M +
Sbjct: 409 -----------------LMILQVHD-----------ELVFEADEGFVPTLVHEVSARMAA 440

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                  +PL  +      +
Sbjct: 441 AAQ--LRVPLVVDVGVGHHW 458


>gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 874

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/632 (14%), Positives = 161/632 (25%), Gaps = 149/632 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVGEA 115
           +   L    VT+   N+              +    +     +         + + +  A
Sbjct: 373 ILACLAERSVTLW--NAK-------RYVQAGLQGTAQVFDLELADYLLHPEESRRDIARA 423

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                      + L +                                           +
Sbjct: 424 AFAFLGTATSAEGLSSEAYAVREALLGARLQPVM----------------ETELAAQGLM 467

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           +   + E  L  +   +   G  VD A               L +E+ +L      +   
Sbjct: 468 QLYRTVELPLVPVLAAMEQTGVYVDRAALERERAAATERINALAREIHTLAG-AEFNISS 526

Query: 236 LEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            ++L   LF   GL            +T    L   +   P    V   R   ++     
Sbjct: 527 PKQLGEILFEHLGLGSGKVKKTKTGYSTNAETLEGLRDQHPIIDNVLTYR-MWTKLRSTY 585

Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           L+ +   +    GR+  +      + TGR S      QN+P  +                
Sbjct: 586 LDGIGALIRPATGRVHTSFNQ-TVTATGRLSSSDPNLQNIPVRTEEGRA----------- 633

Query: 350 ITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         VR+     EG   L+ AD + IE R+LA M+G+   + AF  G+D+
Sbjct: 634 --------------VRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRHGQDI 679

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T A  F V    VT +QR   K +                    GL+          
Sbjct: 680 HARTAAEVFGVPLDAVTPEQRRRAKAVNF--------------GIVYGLSDFGL------ 719

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                   A +              + +++  V      L +  
Sbjct: 720 ------------------------ARDLGIGRREAGGYIDRYFERYHGVRTF---LDKIV 752

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                NG                             GR      + +      +      
Sbjct: 753 ADAHTNGYVTTLY-----------------------GRRRALPALASRNYMQRSF---AE 786

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEF 642
           R            +Q  + D++   M+ A  A         I+L VHDE+V E    +  
Sbjct: 787 RMAMNTP------IQGTAADLIKIAMVRAYDALQAADVKSRILLQVHDELVMEVTAEETE 840

Query: 643 NASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
             + L    M+     A  +PL  + +  K +
Sbjct: 841 TVTELLRTAMSGAAELA--VPLAVDVHVGKNW 870


>gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
 gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725]
          Length = 907

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/658 (13%), Positives = 187/658 (28%), Gaps = 135/658 (20%)

Query: 32  LFAFGFDDHPVELWDCVHDPVM-----PQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            FA              H P+         +KE   N+D   + +N        K   N 
Sbjct: 365 GFAVSSLKDD-FYIPLGHTPLFHKNLDLDKVKEFFRNSDSIFITYN-------FKPLLNE 416

Query: 87  DIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
            I I       ++ A         + V   + L      +      +F K        + 
Sbjct: 417 GIKIKNMDMDLMI-AYHLISSQTKEGV--EIPLEQLSGIDIAPYSEKFGKEAPGNLSTEE 473

Query: 146 NKPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                 E  + +   Y      +  +    LE L   E  L  +   +  +G  +D    
Sbjct: 474 YGKFLVERSKGIMETYGIAMEEIKGK--NLLEVLKETEMPLIKVLSAMERKGIKIDPVYF 531

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
               + +++    L +++  +      +    ++L   LF +  L     T+   +T + 
Sbjct: 532 AKYEKELEILLNNLQKKIFEIAG-EEFNLNSPKQLAEVLFFKLNLDPVKKTKTGLSTDEE 590

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL   K    +         + ++     ++ L +  +S  RL  T   +G + TGR S 
Sbjct: 591 VLEKLKNDGVEIASYILEYRKYAKLKNTYVDALPKLADSRDRLHTTFNQIGTT-TGRLSS 649

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                QN+P  +    +                         +R   IA  G  L+  D 
Sbjct: 650 SNPNLQNIPVKTDEGMK-------------------------IRQGFIADNGNVLMGIDY 684

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE RVLA ++ ++  + A++  EDL+  T  + F                        
Sbjct: 685 SQIELRVLAELSKDENLIAAYKNNEDLHRVTAKKIF------------------------ 720

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                                    + +          NF     +     + E      
Sbjct: 721 -------------------ELEDGEEVSREQRIIAKTINFSIIYGKTAFGLSKELGITQK 761

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                   + +++ +V +    +    E+                          N    
Sbjct: 762 EATDYINRYFEQYPKVKDFEKSIIAYAEK--------------------------NGYTE 795

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---- 617
              GR  +   + +          Q  R          +++Q  + +IL + M+      
Sbjct: 796 TYFGRRRIIEGILSKN---KNIKNQAERMA------VNSVIQGTAAEILKKVMIEIFKVI 846

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             K    ++L VHDE++ E  +         + ++M ++  +   + L       K +
Sbjct: 847 ENKEDISLLLQVHDELIFEIKEEKVEEYRTTIENIMRNSVKF-DDVVLDINTNIGKNW 903


>gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
 gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1]
          Length = 789

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/508 (14%), Positives = 153/508 (30%), Gaps = 123/508 (24%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  +  +   +   G  ++    + +N  ++    ++++++         +    ++L
Sbjct: 388 EIELPVIDILFEMEKHGIKINEKKVYEINDELEENLKEIERKIFD-YCKEEFNLNSPKQL 446

Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN---RMRASRSAVLKLNT 293
              LF + GL     T+   +T +  L   K   P  +++ +        S+        
Sbjct: 447 SFILFEKLGLEPAKKTKTGFSTSEEALQELKFKNPGHVELIDYILKYRELSKLKSTYTLN 506

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L+  M  D R+  T +  G + TGR S      QN+P  S   +                
Sbjct: 507 LLNYMADDKRIHTTFKQTG-TATGRISSINPNLQNIPVGSIYGKR--------------- 550

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                     +R C  A +G + V  D + IE R+LA ++ ++  + AF   ED++  T 
Sbjct: 551 ----------IRECFEAEKGYRFVSFDYSQIELRILASLSNDENLIDAFINDEDIHNKTA 600

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F V   +V    R + K +                    GL+               
Sbjct: 601 KEIFGV--EEVDPKHRRLAKAVNF--------------GIIYGLSP-------------- 630

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                              A +     +  +   + +   +  V    + + +  ++   
Sbjct: 631 ----------------YGLARDTGITQSEAKVFIERYFNLYPGVKNYIDSIIKEAKE--- 671

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                                          GR    +D+ +    L     +  R    
Sbjct: 672 -----------------------KGYTETILGRKRFIKDINSANRMLKQ---RAERIAIN 705

Query: 594 GGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFN-ASM 646
                   +Q  + DI+   M+N  K          ++L +HDE++ E  +    +    
Sbjct: 706 AP------IQGSAADIIKLAMINIYKYLQKTQIDVKMILQIHDELLFEVKEDIVEDFVQE 759

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             + M +       +PLK      K + 
Sbjct: 760 FKNRMENVIK--LKVPLKVNYSTGKNWG 785


>gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 833

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/496 (14%), Positives = 147/496 (29%), Gaps = 117/496 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E+ L  +      RG  VD ++   +  +   +   L  ++  L      +    +
Sbjct: 442 YEEIEKPLVPILSKCEFRGINVDRSVLDEIALVTHQKIETLSNQVYELAGM-EFNLNSPK 500

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   LF    L  +    +T   VL    +       +   R +  +        L + 
Sbjct: 501 QLAEVLFDHLKLPTKKKR-STAVDVLEGLIEEHAIIAPILEYR-KYQKLYSTYAVGLTKH 558

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +++DG++  +     A++TGR S      QN+                            
Sbjct: 559 IHADGKIHTSFNQH-ATQTGRLSSSDPNLQNISVRDEETR-------------------- 597

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R   +ASEG  L+  D + IE RVL+++A E+  ++AF  G D++  T    F
Sbjct: 598 -----MIRKAFVASEGCTLMSIDYSQIELRVLSYLADEKRMMEAFNGGHDIHSETAKAIF 652

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            V    VT   R   K +   +                G++    +  +           
Sbjct: 653 GV--DDVTSTMRRQAKSVNFGIV--------------YGMSEYGLSKQLDI--------- 687

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                           + + +  +++  + +    E  + +G  
Sbjct: 688 ---------------------TIPEARHFITRYNEIYPNITKYMDSV---VEDCLRDGYV 723

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                       R     ++ +    +    +   R        
Sbjct: 724 KTLFN-----------------------RRRYIPEIYDANRAVKDFGK---RAAMNAP-- 755

Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASML-YHL 650
               +Q  + DI+   M+ A +          ++L VHDE+V +  D +      L   +
Sbjct: 756 ----IQGTAADIIKIAMIKADELLTSNNYKSSMILQVHDELVFDVYDDELEQIQDLMVSV 811

Query: 651 MTSNPSWAKGLPLKAE 666
           M    SW   L +  +
Sbjct: 812 MEHIVSWPIDLNVSVD 827


>gi|332675191|gb|AEE72007.1| DNA polymerase I [Propionibacterium acnes 266]
          Length = 931

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 99/657 (15%), Positives = 182/657 (27%), Gaps = 135/657 (20%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D   V H++      L      ++  
Sbjct: 388 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 446

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K            +    +      L        
Sbjct: 447 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 499

Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               R        DV     E     E L   E  +     ++   G  VD  +   L  
Sbjct: 500 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 559

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266
             D   T+  QE      G   +    ++L+  LF +  +     T++   T    L+  
Sbjct: 560 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 618

Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P    +  +R          ++ L++ +  DGR+  T     A  TGR S    
Sbjct: 619 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 675

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383
             QN+P  +                              +R   +  EG + L+ AD + 
Sbjct: 676 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  K M        
Sbjct: 711 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 765

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 766 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 786

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +   +  +  +V E    L +  +Q    G                            
Sbjct: 787 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 821

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
            GR     D+ +             R            +Q  + D++   M+   +    
Sbjct: 822 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 871

Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +E     +  + M         +PL       + +
Sbjct: 872 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 926


>gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6]
          Length = 861

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 103/657 (15%), Positives = 193/657 (29%), Gaps = 166/657 (25%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERTVLKACFNLDIPIHRW 93
           +   D  V  +         + L   L+N DVT+ V     F+   L   +   +    W
Sbjct: 349 YAVQDKTV--FPLES-----EDLLRLLDNKDVTLDV-----FDSAPL---YARAMAAGGW 393

Query: 94  -----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                    + A      ++             K    + +I+              +  
Sbjct: 394 GSSIVWDGKLAAYLLDASAS-------------KYNLSELIISYRA-----------DAA 429

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHT 206
              E W   G        +  EI    E     + E     +   +   G  VD      
Sbjct: 430 FTCEKWPDAGALADLFAKMKTEITALEEDSLYNDIEFPLAQVLADMTRIGILVDKEGIEK 489

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQRVL 263
               +  E   +   +   T     +    ++L   LF   GL     T    +T    L
Sbjct: 490 FGVKMRSELEDVLTRIHMETGSASFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETL 549

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
            + +   P    +   R    +     +  L++ +  DGR+        A RTGR S   
Sbjct: 550 EALRD-YPLVEDILQYR-AYQKLNSTYVEGLLKVIAEDGRIHTRFNQTEA-RTGRLSSDN 606

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  +                          +   +R+  +A  G  LV AD + 
Sbjct: 607 PNLQNIPIRTE-------------------------LGSQLRAYFVARPGCVLVDADYSQ 641

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA + G++   +AF TGED++ +T A+ + +   QVT   R+  K +        
Sbjct: 642 IELRILAHVTGDEHMQQAFLTGEDIHRSTAAKIYGLPLEQVTPRLRSSAKAIN------- 694

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G                              +     + +        
Sbjct: 695 -------FGIMYG------------------------------KGAYSLSKDIGVSVKEA 717

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +   K +     +VS   ++                                    +   
Sbjct: 718 DAFLKNYLATFPKVSGYMDKTISDARSC--------------------------GYVSTL 751

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------ 617
            GR     ++ +N   +  +  ++ R            +Q  + D++   M+        
Sbjct: 752 FGRRRSLPELASNNHNIRASGERMAR---------NTPIQGTAADVIKLAMVRVWRRLRD 802

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
            K    ++LTVHDE++ E P+ +   A+ +    M    ++A  +PL  E ++ K +
Sbjct: 803 EKMESRLILTVHDELIVEAPEAEAAKAAAILQEEMEGCVNYA--VPLSTEVHQGKNW 857


>gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032]
 gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032]
          Length = 879

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/655 (12%), Positives = 175/655 (26%), Gaps = 127/655 (19%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L  F   +     +    D +  +  KE +++        +S      L+     D+ + 
Sbjct: 335 LIGFAIHNENGAFFMTKEDALQSEAFKEWVQDETKKKWVFDSKRAVVALRWH---DVDLK 391

Query: 92  RWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN-KPN 149
                 L+ +         + V    K         +  +      E       +   P 
Sbjct: 392 GVDNDVLLASYVVNPQKTYEDVASVAK---------EYGLNIALSDEKVYGKGAKQAIPP 442

Query: 150 HREAWRLFGEYCKGDV---TVTREIFKRLEPLS---SKEQELWYLDQTINDRGYCVDVAL 203
             E     G           +T E  ++ +        E  L  +   +   G  VD+  
Sbjct: 443 EDELKEHLGRKAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGVKVDIKR 502

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
              + + +  +  + ++ +  L      +    ++L   LF + GL +   T+   +T  
Sbjct: 503 LENMGEELTKKLKEYEETIHRLAG-ETFNINSPKQLGVILFEKLGLPIIKKTKTGYSTSA 561

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL   +        + + R    +     +  L++    D     T      ++TGR S
Sbjct: 562 DVLEKLEDKHEIIRSILHYRQ-IGKLQSTYVEGLMKVTRKDTHKVHTRFNQALTQTGRLS 620

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379
                 QN+P       +                         +R   +   EG  +  A
Sbjct: 621 STDPNLQNIPIRLEEGRK-------------------------IRQAFVPSKEGWLMFAA 655

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA ++ ++  ++AF    D++  T    F+V+  +VT   R   K +   +
Sbjct: 656 DYSQIELRVLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGI 715

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y            +  L +               ++  + +   + +   +       +
Sbjct: 716 VYGIS-----DYGLSQNLGITRKEAAAFIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLL 770

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                R       ++  +        +    T   G A    K+  +             
Sbjct: 771 KR--RRYIPDITSRNFNIKSF---AERTAMNTPIQGSAADIIKKAMID------------ 813

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                 R L    +  N                                     ++    
Sbjct: 814 ----MARRLKEEKLQTNL------------------------------------LLQVHD 833

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                       ++ E P  +      +   +M +       +PLK +      +
Sbjct: 834 E-----------LIFEAPKEEIAILEKIVPEVMENALQ--LDVPLKVDFASGPSW 875


>gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
 gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359]
          Length = 857

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 99/654 (15%), Positives = 185/654 (28%), Gaps = 137/654 (20%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFN 85
              +       +   V                 ALE+++V + A     +   L KA   
Sbjct: 330 HSKISTLTLAVEGG-VYEV----KSEDIGQWLTALEDSEVVVTA-----DGKSLYKAALC 379

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
             I         + A              A  L+      G+ L         +E   + 
Sbjct: 380 AGIGDLPVYDVTLAAYLLDPTR------TAYGLTYLSEVFGRTL---------NEVKGEA 424

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
                 EA  ++  Y  G V    E         + E  L      +   G+ V+     
Sbjct: 425 QNETANEAAFVYSLY--GPVQQALEEKGLSSLFETIESPLERTLAVMELNGFTVNRDRLE 482

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
            +   +  E   L+ E+  L      +    ++L   LF + GL +   T+   +T   V
Sbjct: 483 EMKADLSREADALETEIYDLAG-ESFNINSTKQLGVILFEKMGLPVIKKTKTGYSTDSSV 541

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSG 321
           L    + +    ++   R    +     L+ L   ++    R+  +   +  + TGR S 
Sbjct: 542 LEELAEQSEIVPKILKFR-ALKKLISTYLDGLEPLIDEKTERVYTSFNQMV-TATGRLSS 599

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVAD 380
                QN+P  +    +                         +RS  +  EG   LV  D
Sbjct: 600 SDPNLQNIPIRTEQGRK-------------------------IRSFFVPGEGYDYLVSGD 634

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA ++ +   +  F+  +D++  T +  F V   +VT + R+  K +   + 
Sbjct: 635 YSQIELRLLAHLSQDPTMIDGFKHNQDIHRRTASEVFGVPFDEVTGELRSHAKAVNFGII 694

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +          S    +    ++   + E             
Sbjct: 695 YGIS-----DFGLSRNLGITRNRAKEYIESYFARYSTIHDYMNGLVEEARRTGESRTMF- 748

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                                    + R +P +  K        
Sbjct: 749 ----------------------------------------GRLRTLPEISSKNFMRRSF- 767

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                           R+ +NT  +          KL  N VQ           +N    
Sbjct: 768 --------------AERTAMNTPIQG---SAADIIKLAMNAVQ------KKLEALNLH-- 802

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +++ VHDE+V E P  ++      L   M    +    +PL A+ +    +
Sbjct: 803 -SRMLVQVHDELVLEVPAQEKETIEKLLKETMEEVVT--LSVPLIADIHTGTNW 853


>gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
 gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061]
          Length = 879

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/655 (12%), Positives = 176/655 (26%), Gaps = 127/655 (19%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L  F   +     +    D +     KE +++        +S      L+     D+ + 
Sbjct: 335 LIGFAIHNENGAFFMTKEDALQSDAFKEWVQDETKKKWVFDSKRAVVALRWH---DVDLK 391

Query: 92  RWI-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN-KPN 149
                 L+ +       + + V    K         +  +      E       +   P 
Sbjct: 392 GVDNDVLLASYVVNPQKSYEDVASVAK---------EYGLNIALSDEKVYGKGAKQAIPP 442

Query: 150 HREAWRLFGEYCKGDV---TVTREIFKRLEPLS---SKEQELWYLDQTINDRGYCVDVAL 203
             E     G           +T E  ++ +        E  L  +   +   G  VD+  
Sbjct: 443 EDELKGHLGRKAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGVKVDLKR 502

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
              + + +  +  + ++ +  L      +    ++L   LF + GL +   T+   +T  
Sbjct: 503 LEKMGEELTKKLKEYEETIHRLAG-ETFNINSPKQLGVILFEKLGLPIIKKTKTGYSTSA 561

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL   +        + + R    +     +  L++    D     T      ++TGR S
Sbjct: 562 DVLEKLEDKHEIIRSILHYRQ-IGKLQSTYVEGLMKVTRKDTHKVHTRFNQALTQTGRLS 620

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379
                 QN+P       +                         +R   +   EG  +  A
Sbjct: 621 STDPNLQNIPIRLEEGRK-------------------------IRQAFVPSKEGWLMFAA 655

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE RVLA ++ ++  ++AF    D++  T    F+V+  +VT   R   K +   +
Sbjct: 656 DYSQIELRVLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGI 715

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y            +  L +               ++  + +   + +   +       +
Sbjct: 716 VYGIS-----DYGLSQNLGITRKEAAAFIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLL 770

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                R       ++  +        +    T   G A    K+  +             
Sbjct: 771 KR--RRYIPDITSRNFNIKSF---AERTAMNTPIQGSAADIIKKAMID------------ 813

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                 R L   ++  N                                     ++    
Sbjct: 814 ----MARRLKEENLQTNL------------------------------------LLQVHD 833

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                       ++ E P  +      +   +M +       +PLK +      +
Sbjct: 834 E-----------LIFEAPKEEIAILEKIVPEVMENALQ--LDVPLKVDFASGPSW 875


>gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
 gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 95/685 (13%), Positives = 192/685 (28%), Gaps = 127/685 (18%)

Query: 5   FIDFETR----SPIDLTKCGICKYAEDVC-----VILFAFGFDDHPVELWDCVHDPVMPQ 55
             D ET        +L+   I    ED       ++ F    DD    +     D     
Sbjct: 314 TFDVETDFQHIDFKNLSHATIHFELEDTNYLKDNILKFGLYTDD--THIVINAEDIKQHS 371

Query: 56  VLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            L E LE+       +++   +   V     +++I   +    ++ +       A+  V 
Sbjct: 372 DLIEWLEDAQTVKTVYDAKKTY---VAAHRLDINIQNVQ-FDVMLASYIIDPSRAIDDVK 427

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               +S       K+ ++ + KG+ H    D     H  +        K  +    + + 
Sbjct: 428 SV--VSLYGQNYVKDNVSIYGKGKKHHIPEDNILNEHVASITEAIASAKPLMEEQLKEYN 485

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           ++E L+  E  L  +   + + G   DV     +   +  +   L + +         + 
Sbjct: 486 QVELLADLELPLAKILSEMEEIGIYTDVNDLKHMENEIQEKLDVLIKNIHEAAG-EEFNI 544

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF    L +   T+   +T   VL   K   P    +   R   S+     
Sbjct: 545 NSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQLKGEHPIIEHILEYRQ-LSKLQSTY 603

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L + ++ D R+        A +TGR S      QN+P       +            
Sbjct: 604 VEGLQKVISKDNRIHTRFNQTLA-QTGRLSSVDPNLQNIPIRLEEGRK------------ 650

Query: 351 TSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R      SE   ++ AD + IE RVLA +  ++   +AF  G D++
Sbjct: 651 -------------IRKAFKPTSEDSVILSADYSQIELRVLAHITQDESLKEAFIHGHDIH 697

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T  + FNV    V    R   K +   + Y            +  L +         +
Sbjct: 698 TATAMKVFNVEANDVDSLMRRQAKAVNFGIVYGIS-----DYGLSQSLGITRKKAKAFID 752

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                +   + +   + ++       +  +     R       ++  +        +   
Sbjct: 753 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHR--RRYIPDITSRNFNLRSF---AERTAM 807

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
            T   G A                              L            N   +    
Sbjct: 808 NTPIQGSAADII-------------------------KLAMVKFNEKVKNTNYHAKL--- 839

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM-LY 648
                                   ++                ++ E P ++  + S  + 
Sbjct: 840 ------------------------LLQVHDE-----------LIFELPKSEVEDFSEFVE 864

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
            +M +       +PLK +      +
Sbjct: 865 EIMENALD--LDVPLKVDSSYGPTW 887


>gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 937

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 102/678 (15%), Positives = 192/678 (28%), Gaps = 145/678 (21%)

Query: 31  ILFAFGFDDHPVELWDC---VHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNL 86
           +  A    +H            DP +   +++AL    +    H+       L       
Sbjct: 365 VGVAL-VGEHAGLHVSLDGDTPDPALVAAVRDALGEGGLAKAVHDLKRTLKALTAPTEGD 423

Query: 87  DIPI-----HRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGET 138
            +             L+ A          +L+A+ EA   +                 + 
Sbjct: 424 GLGPDAALDGVVDDVLLSAYLIQPDRRDTSLEALAEAHLHTPLTAPREPAQQRAQGTFDL 483

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTV-TREIFKRLEPLSSKEQELWY--LDQTINDR 195
                   +              +   T  T ++  R      +E E+    L   +   
Sbjct: 484 DGGQAAAERAARAADAVRAAWVVRRLSTQFTPQVLDRGAQRLLQELEIPLSRLLARMELT 543

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELE----SLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           G  VDV     L +          +         T G+  +    ++L+  LF    +  
Sbjct: 544 GIAVDVDALTGLREDFTAAADAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNMPR 603

Query: 252 EDLTE---TTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
              T+   +T    L    +    P    +  +R  A++     +  L+E +  DGR+  
Sbjct: 604 TRKTKTGYSTDVDSLQDLLEQTQHPFLENLMAHR-DATKLRQT-VEGLLETVAPDGRIHT 661

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T     A+ TGR S      QN+P  + +                            +R 
Sbjct: 662 TYSQ-TAAATGRLSSLHPNLQNIPVRTEAGRR-------------------------IRG 695

Query: 367 CVIASE--GK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             +A E  G+   L+ AD + IE R++A ++ ++  ++AF  GEDL+    ++ F V P 
Sbjct: 696 VFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPD 755

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT +QRA  K M   L Y            +  L                         
Sbjct: 756 EVTAEQRAKVKAMSYGLAYG-----LSSFGLSKQL------------------------- 785

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                  + K +  +   V +   ++     Q            
Sbjct: 786 --------------KISVDEARGLMKGYFDRFGGVRDYLRDVVAQARQ------------ 819

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                         +       GR     D+ ++            R            +
Sbjct: 820 --------------DGYTSTIEGRRRYLPDLSSDN---RQLRDMAERAALNAP------I 856

Query: 603 QAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNP 655
           Q  + DI+   M++             ++L VHDE++ E P  +     ++L   M    
Sbjct: 857 QGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQSTALLKERMGRAA 916

Query: 656 SWAKGLPLKAEGYESKRY 673
                +PL     + + +
Sbjct: 917 E--LSVPLDVHVGQGRSW 932


>gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 895

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 95/660 (14%), Positives = 189/660 (28%), Gaps = 140/660 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             ++ F        V              L E L +        ++  +   L       
Sbjct: 357 PSLVGFGLASATETV-YVPWEDGSHHGAALTEWLASPAR-KCFFHAKPQFKTLLRA-GFA 413

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T + +      SA +++ E           G+ L        +         
Sbjct: 414 VDGLA-FDTRIASWLVKPGSAPQSLAE-----QVWEVLGETL------PVSDPNQLVPLA 461

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHT 206
                A   +      D   T  + +R   +    E  L  +   +   G  +D      
Sbjct: 462 DAVSPATEAWFVRRVADGQAT-ALDERTRAVLDEIELPLVAVLAEMELNGVAIDAVALTR 520

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
           L   +  + + L     +     + +    ++L+  LF E G+     T+   +T    L
Sbjct: 521 LRDRLTGKASDLAARAYAEIGHEI-NLGSPKQLQQVLFEELGMPKTRSTKTGYSTDAASL 579

Query: 264 SSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           +  ++    P    +  +R       +  + TL  ++  DGR+  T    G + TGR S 
Sbjct: 580 ADLQEKSPHPFLGLLLQHRDATKLKQI--VETLERSVTGDGRIHTTYDQTG-TSTGRISS 636

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380
                QN+P  +    E                         +RS  ++  E + L+ AD
Sbjct: 637 NDPNLQNIPIRTEEGRE-------------------------IRSSFVSGGEDETLLTAD 671

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R++A ++ +   ++AF  GEDL+    +R F V P +VT   R   K M   L 
Sbjct: 672 YSQIEMRIMAHLSDDPGLIEAFNAGEDLHRFVGSRVFGVPPEEVTPLMRTKVKAMSYGLA 731

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y              GL+    +  ++  ++                             
Sbjct: 732 Y--------------GLSAFGLSKQLRIETS----------------------------- 748

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                +   + ++   V +    + +                              +   
Sbjct: 749 -EARELMNGYFERFGAVRDYLRNVVEQAR--------------------------LDGFT 781

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA--- 617
               GR   + D+ +             R+           +Q  + DI+   M+     
Sbjct: 782 ETIFGRRRPFADLTSTN---RVLRENAERQALNAP------IQGSAADIMKIAMLGIAGD 832

Query: 618 ---TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
               + G  ++L VHDE++ E    +      +    M         +PL  +      +
Sbjct: 833 MSDQRLGSRMLLQVHDELIFEVAPGEGDALETIVRARMVGAAD--LRVPLDVQIGRGSTW 890


>gi|313895591|ref|ZP_07829147.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975717|gb|EFR41176.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 642

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 104/717 (14%), Positives = 193/717 (26%), Gaps = 154/717 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAED---VCVILFAFGFDDHPVELWDCVH--DPVMPQ-- 55
            +  DFET    D       K A D     ++  AF   +         H     + +  
Sbjct: 24  IIAFDFET--APDEAYRAEEKAALDPARAHIVGCAFSASERTGIYVPVAHKIGANIDRTA 81

Query: 56  ---VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
               L + L N  +T VAHN  FE + +     + I       T + A      SA +  
Sbjct: 82  FFLFLADLLANPHITKVAHNIAFESS-MAYARGIVIQP-PVYDT-IAAAQMTSRSAYEF- 137

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              L  S  K   G+ L          E    ++        +    Y   D   +  ++
Sbjct: 138 -RRLNESGLKHLAGELL--EESLPTFAETTGGKHFDELPAQDKETVRYGAADADFSLRLY 194

Query: 173 KRLEPLSSKEQELWYLDQT------------INDRGYCVDVALAHTLNQIVDVERTKLDQ 220
                   +                      + + G  +D +L        ++E  ++ Q
Sbjct: 195 HTFNGWFDRYLPRHRWIVEHMESPTAIYLGVMKNNGVPIDQSLMQKRKAESEMEMERIRQ 254

Query: 221 ELESLTYGLVSSSR-CLEKLKTWLFLETGLHLED-LTETTCQ----------RVLSSNKK 268
           E+  L   +   +       K +LF   GL +     ++                  +K 
Sbjct: 255 EITFLIGDVNIGANCSTADFKKYLFESQGLPVLKVTNKSQAALDDMAMVLLGEWCEEHKP 314

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                 ++     R  +     ++  ++ +N   +      F  ++ TGR +      QN
Sbjct: 315 ELVPLFKLVQEYRRWGKIQSTYIDGYLKFLNPVTKRLHPDIFALSTDTGRMNCRKPNCQN 374

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +PR S                              VR+ + A  G  ++  D + IE RV
Sbjct: 375 MPRKSND-------------------------PIGVRNFIKAPSGHLILSLDFSQIELRV 409

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-------VTKDQRAIGKVMELALGY 441
            A+   ++  ++ +  G D++  T    F V   +         K++R I K +     Y
Sbjct: 410 GAFYCRDERMMETYRAGGDIHAATTCVIFGVTDEEAQDKHRADYKERRTIAKNVNFGTFY 469

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
               +  Q                                                    
Sbjct: 470 GLFPRGLQNTLK--------------------------------------FKAGVEKTLP 491

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            CE V    +  +  +S    E                                  L   
Sbjct: 492 ECESVIANLKAGYRELSTWQEETKVQA--------------------------ARRLYSE 525

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---- 617
              GR     D+ +         ++  R+           +Q  + DIL   ++      
Sbjct: 526 TWLGRRRYLPDIRS---------KEWARKSFAERCALNTPIQGTAADILKLAIVRILKGL 576

Query: 618 -TKAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
             +     +L +HDE+    P    +   + +   M   P     LPL A+    + 
Sbjct: 577 PDRPWLKPILQIHDELTFIIPAGRLDEAVAFIRACMEEQPFPEFDLPLIAKASAGEN 633


>gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
 gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165]
 gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137]
          Length = 910

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 99/657 (15%), Positives = 182/657 (27%), Gaps = 135/657 (20%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D   V H++      L      ++  
Sbjct: 367 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 425

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K            +    +      L        
Sbjct: 426 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 478

Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               R        DV     E     E L   E  +     ++   G  VD  +   L  
Sbjct: 479 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 538

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266
             D   T+  QE      G   +    ++L+  LF +  +     T++   T    L+  
Sbjct: 539 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 597

Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P    +  +R          ++ L++ +  DGR+  T     A  TGR S    
Sbjct: 598 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 654

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383
             QN+P  +                              +R   +  EG + L+ AD + 
Sbjct: 655 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 689

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  K M        
Sbjct: 690 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 744

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 745 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 765

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +   +  +  +V E    L +  +Q    G                            
Sbjct: 766 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 800

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
            GR     D+ +             R            +Q  + D++   M+   +    
Sbjct: 801 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 850

Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +E     +  + M         +PL       + +
Sbjct: 851 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 905


>gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
 gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187]
          Length = 915

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 99/657 (15%), Positives = 182/657 (27%), Gaps = 135/657 (20%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D   V H++      L      ++  
Sbjct: 372 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 430

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K            +    +      L        
Sbjct: 431 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 483

Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               R        DV     E     E L   E  +     ++   G  VD  +   L  
Sbjct: 484 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 543

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266
             D   T+  QE      G   +    ++L+  LF +  +     T++   T    L+  
Sbjct: 544 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 602

Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P    +  +R          ++ L++ +  DGR+  T     A  TGR S    
Sbjct: 603 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 659

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383
             QN+P  +                              +R   +  EG + L+ AD + 
Sbjct: 660 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 694

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  K M        
Sbjct: 695 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 749

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 750 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 770

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +   +  +  +V E    L +  +Q    G                            
Sbjct: 771 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 805

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
            GR     D+ +             R            +Q  + D++   M+   +    
Sbjct: 806 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 855

Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +E     +  + M         +PL       + +
Sbjct: 856 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 910


>gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331]
          Length = 903

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 96/643 (14%), Positives = 176/643 (27%), Gaps = 143/643 (22%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGLP 106
               Q L   L +     V HN+     VL         + +       T + A      
Sbjct: 379 EADEQALAAWLADPGQPKVLHNAKNALRVLPEQGWRLEGISM------DTALAAYLVKPG 432

Query: 107 S---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
               AL A+  E L             +A                    +    F    K
Sbjct: 433 RRSFALDALAVEYLGRELAPAPASDGQLAFGADDRAEADALMAQARAVLDLGDAFTTRLK 492

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             V  T  ++         E     +   +   G   D A   ++ Q       +  +E 
Sbjct: 493 E-VGATELLY-------DMELPTSIMLARLERHGIAADRAHLESMEQQFAGAVQQAVKEA 544

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQAIQVFN 278
            +       +    ++L+  LF E  L     T+T       +      +   +   +  
Sbjct: 545 HAAVG-REFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTEHELPVIML 603

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                ++  V  +  L++ + +DGR+  T     A+ TGR S      QN+P  +     
Sbjct: 604 RHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGRA 661

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQW 397
                                    +R   +  EG   L+ AD + IE RV+A ++ +  
Sbjct: 662 -------------------------IRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAG 696

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF +GEDL+ T  ++ F V  + V  + R   K M   L                GL
Sbjct: 697 LIEAFTSGEDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGL--------------AYGL 742

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           +    +  +   +                                   +   +  +   V
Sbjct: 743 SAFGLSQQLNIEAG------------------------------EARGLMDTYFLRFGGV 772

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +  + + +    T                                 GR     D+ ++ 
Sbjct: 773 RDYLHRVVEEARST--------------------------GYTETILGRRRYLPDLNSDN 806

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDE 631
                      R            +Q  + DI+   M+   +A         ++L VHDE
Sbjct: 807 ---RQRREAAERMALNAP------IQGTAADIVKVAMLKVDRALTEAELTSRMLLQVHDE 857

Query: 632 IVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           IV E    +      +    M++        PL       + +
Sbjct: 858 IVLEIAKGEREQVEEILRREMSTAVE--LRAPLDVSVGVGRDW 898


>gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
 gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4]
          Length = 1054

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 113/797 (14%), Positives = 213/797 (26%), Gaps = 211/797 (26%)

Query: 5    FIDFETRSPIDLTKCGICKYAEDVCVILFA------FGFDDHPVELWD-CVHDPVMPQVL 57
              D E  + ID+   G      +  V   +        + + P    D         Q+ 
Sbjct: 341  ACDTE-VAQIDVKAVGP---VGNGVVTCLSLYSGPDVDYGNGPYVWVDNLDSAEGTLQLF 396

Query: 58   KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------LPSALKA 111
            KE LE+ +   V HN  F+R VL     +++       T+ +AR            +L++
Sbjct: 397  KEFLESKNYLKVWHNYSFDRHVLFNH-GINVQGLG-GDTMHMARLWNTARFQNGGYSLES 454

Query: 112  VGEALKLSSQK-MEEGK---ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            +   L L  +K M+E     +L     KG+              E  + +  Y   D   
Sbjct: 455  LTADLLLQRKKPMKELFGIPKLKKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAES 514

Query: 168  TREIFKRLEPLSSKEQ------------------------ELWYLDQTINDRGYCVDVAL 203
            T  + + L+    +                                  I  RG  VD+  
Sbjct: 515  TWFLHRVLQDKLDQTFWFEKPNGGESQVGSMYEFYREYIVPFGECLTDIERRGMHVDLEY 574

Query: 204  AHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLFLET----------- 247
               + +    +R +L++ +              +     + +  LF              
Sbjct: 575  LAGVEKQALEDRARLEKLVLQWASRYCEESERINLYSAAQKQQLLFAPYFNKKKKEQVLP 634

Query: 248  --------------------------------GLHLEDLTET----TCQRVLSSNKKLTP 271
                                            G+     T +        VL       P
Sbjct: 635  AERSFEVENTEGFIEEGKQKAKKKRNITIRGLGIPPTHFTASGLPAASAEVLKDLAG-HP 693

Query: 272  QAI------------------------QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
            +A                         +   +    +      +  L E  +S+ R+  +
Sbjct: 694  EANPPQYGRAYGHFEDKEEGAAACVALKALFDISSINTMLNNFILPLQELADSNSRVHCS 753

Query: 308  LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
            L     + TGR S      QN P   +                             +R  
Sbjct: 754  LNLN--TDTGRLSSRKPNLQNQPAMGKD-------------------------RYKIRDA 786

Query: 368  VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
              A  GKKL+VAD + +E R++A +   +  ++AF+ G D +  T    +          
Sbjct: 787  FTAPPGKKLIVADYSQLELRLMAHITQCKAMIEAFKAGGDFHSRTAMGMY---------- 836

Query: 428  QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
               + K +E         +A  +   TTG        L        +     NF     +
Sbjct: 837  -PYVAKAVENG-------EALLEWDHTTG-KEPPAPLLKDKYGDERKNAKVLNFSIAYGK 887

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                 A +            + W      V +   +  +                     
Sbjct: 888  TAFGLAKDFNVSRKEAADTLEKWYSDRGEVRDWQKKAIETART----------------- 930

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                             GR     D  + ++            R            +Q  
Sbjct: 931  ---------FGYTRTLLGRYRRLPDAMLRDDSMTSKKARGHAERAAINTP------IQGA 975

Query: 606  SRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWA 658
            + D++ + M+         + G+ +V  +HDEI+ E P+   +    ++ HLM +     
Sbjct: 976  AADVVMQAMLQVHHSPRLRELGWGMVSQIHDEIIVEGPEESVDEAMKLVVHLMENPFQKP 1035

Query: 659  KGLPLKAEGYESKRYRK 675
              + L+ +      + K
Sbjct: 1036 LSVALEVDANVDDSWFK 1052


>gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1]
          Length = 892

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 99/657 (15%), Positives = 182/657 (27%), Gaps = 135/657 (20%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D   V H++      L      ++  
Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 407

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K            +    +      L        
Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460

Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               R        DV     E     E L   E  +     ++   G  VD  +   L  
Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266
             D   T+  QE      G   +    ++L+  LF +  +     T++   T    L+  
Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P    +  +R          ++ L++ +  DGR+  T     A  TGR S    
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383
             QN+P  +                              +R   +  EG + L+ AD + 
Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 671

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  K M        
Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +   +  +  +V E    L +  +Q    G                            
Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
            GR     D+ +             R            +Q  + D++   M+   +    
Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832

Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +E     +  + M         +PL       + +
Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887


>gi|182682934|ref|YP_001837058.1| DNA polymerase [Enterobacteria phage EPS7]
 gi|182630646|gb|ACB97578.1| DNA polymerase [Enterobacteria phage EPS7]
          Length = 855

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/696 (12%), Positives = 178/696 (25%), Gaps = 157/696 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62
           +  D ET             YA D  ++  +    ++     D      V    L++ L+
Sbjct: 161 IAFDSETS----------ALYARDGYLLGVSMSHQEYQGVYIDSDSITEVAVHYLQKILD 210

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLARSNGL---PSALKAVGEA 115
           + +  IV HN  F+         L         R   T++             LK++   
Sbjct: 211 SKNHQIVFHNLKFDMHFYSYHLGLSFEKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                    E  +    +CK          +       + +   Y   D   T  +    
Sbjct: 271 YTDMGDYDFELDKFKEDYCKAHKI---KKEDFSYDLIPFDIMWPYAAKDTDATLRLHNFF 327

Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223
            P   K                   Q + DRG  + V         +     K  ++L  
Sbjct: 328 LPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISVDRLKEAQYQLTHNLNKAREKLYT 387

Query: 224 -------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271
                          +   +++L+  LF   GL           ++T    L+      P
Sbjct: 388 YPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTNAEALNELATQHP 447

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            A  +   R + ++     +  ++ ++++DG +R        +     S      Q LPR
Sbjct: 448 IAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQLPR 506

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                                           ++ CV+A  G +++  DL   E    A 
Sbjct: 507 D----------------------------ESIIKGCVVAPPGYRVIAWDLTTAEVYYAAV 538

Query: 392 MAGEQWKLKAFETGEDLYVTTYA------------RSFNVAPAQVTKDQRAIGKVMELAL 439
           ++G++   + F   ++                           ++    R   K +   +
Sbjct: 539 LSGDRNMQQVFINMKNEPDKYPDFHSNIAHMVFKLTCEPRDVKKLFPALRQAAKAITFGI 598

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  G            +N        KT     E                         
Sbjct: 599 LYGSGPAKVAH-----SVNEALLEQAAKTGEPFVE-----------------------CT 630

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +   + +  +  ++    ++ H   +                              
Sbjct: 631 VADAKDYIETYFGQFPQLKRWIDKCHDQIKN--------------------------FGF 664

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +    GR     ++ +    +     +              I+Q+ S D L  G ++A +
Sbjct: 665 IYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAIDADE 715

Query: 620 --------AGYDIVLTVHDEIVCETPDTDEFNASML 647
                       IV+ VHD +V    +      + +
Sbjct: 716 EILSLGLGKEMKIVMLVHDSVVAIVREDLIDQYNEI 751


>gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1]
 gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2]
 gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1]
 gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1]
 gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2]
 gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1]
 gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 99/657 (15%), Positives = 182/657 (27%), Gaps = 135/657 (20%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D   V H++      L      ++  
Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 407

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K            +    +      L        
Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460

Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               R        DV     E     E L   E  +     ++   G  VD  +   L  
Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266
             D   T+  QE      G   +    ++L+  LF +  +     T++   T    L+  
Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P    +  +R          ++ L++ +  DGR+  T     A  TGR S    
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383
             QN+P  +                              +R   +  EG + L+ AD + 
Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 671

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  K M        
Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +   +  +  +V E    L +  +Q    G                            
Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
            GR     D+ +             R            +Q  + D++   M+   +    
Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832

Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +E     +  + M         +PL       + +
Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887


>gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington]
 gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I
 gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi]
 gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 872

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/633 (13%), Positives = 185/633 (29%), Gaps = 155/633 (24%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GEA 115
           +   L N  +  + ++      +LK   N    I       ++  +       K +  E 
Sbjct: 377 ILNLLTNKSIKKITYSLK---HLLKFYANQSHKITAIEDLELMQYTLSAGLVQKNLFAET 433

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L   +   E  K +I      +       +NK                       +++  
Sbjct: 434 LTKDNIINESAKIVINFISLYKQTLLALQKNKAF--------------------RLYR-- 471

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
                 +    ++   +   G  VD    H L+     E  K+++E+ +L+     +   
Sbjct: 472 ----EIDLPTCFILDKMEKIGIKVDANYLHQLSDEFGTEILKIEEEIFALSGTK-FNIAS 526

Query: 236 LEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            ++L   LF +  L   +      + +T   +L    +       +     + ++     
Sbjct: 527 QKQLSEILFKKMQLPSGNTLAKTSSYSTKAGILKKLSEDGYHIATLLLRWRQLTKLKNTY 586

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            ++L + +N+  +   T     ++ TGR S      QN+P  S    +            
Sbjct: 587 TDSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNIPTRSSDGNK------------ 634

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   IA +G KL+ AD + IE R+L+ +A      +AF   ED++ 
Sbjct: 635 -------------IRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIHT 681

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T  + FN+   ++T + R   K +                    G++            
Sbjct: 682 QTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS------------ 715

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                 A +            K +  ++  + E   +       
Sbjct: 716 ------------------AFGLAKQLNVSNGTAAEYIKQYFAEYKGMQEYMVQTKAYA-- 755

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                                     N  +    GR      + + +       +   R 
Sbjct: 756 ------------------------NRNGYVTNFFGRKCFIPLIHDKK-----LKQFAERA 786

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  S DI+   M+         K    ++L +HDE++ E P+ +    
Sbjct: 787 AINAP------IQGTSADIIKIAMIKLAQEIEKRKLKTRLILQIHDELLFEVPEIELELV 840

Query: 645 -SMLYHLMT--SNPSWAKGLPLKAEGYESKRYR 674
             ++  +M   +N      +P+  E      ++
Sbjct: 841 IPIIKKIMEYSTNI----DVPIITEIRAGNNWK 869


>gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1]
 gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax]
          Length = 1860

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 88/657 (13%), Positives = 178/657 (27%), Gaps = 143/657 (21%)

Query: 10   TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVT 67
            T   +D+   G+  +  D  + L     +D+PV ++D  +     +   L+E L+N  V 
Sbjct: 1309 THCGLDIETTGLEVF--DEKIRLIQIAVEDYPVIIYDMFNITKESILTGLREVLKNEKVV 1366

Query: 68   IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA------VGEALKLSSQ 121
             +  N  F+   L         +     T + ++       +        V + L ++  
Sbjct: 1367 KIIQNGKFDAKFLMHN---KFEVANIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLD 1423

Query: 122  KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
            K ++                    +    +   +L  E C+ ++            ++  
Sbjct: 1424 KQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICRENMGT----------VNDI 1473

Query: 182  EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
            E +       +   G  VD+         +  E  +   +L++       +    +++  
Sbjct: 1474 ENKCILPICDMELNGITVDLESLSKSTNEILSELNEETSKLKAELKDEEINVNSQQQVLK 1533

Query: 242  WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
             L  +    + +            N     + + + N R    +        L + +N  
Sbjct: 1534 ALQNKNVRDVSNKLIENTSDSNLKNFLNHREVVLLRNYRR-LYKLYSAFYLKLPQHINKK 1592

Query: 302  GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
                 T      + +GR+S      Q +PR                              
Sbjct: 1593 TNKIHTTFNQLKTFSGRFSSEKPNLQQIPR-----------------------------Q 1623

Query: 362  DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R   I  +    ++AD   IE ++ A +  +   LKA+    DL+  T +     A 
Sbjct: 1624 KNIREIFIPQKDNIFIIADFRQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKAI 1683

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            A V K+ R I K +   L Y       +  A+T                           
Sbjct: 1684 ADVNKEDRHIAKAINFGLIYGMNYVNLKNYANTY-------------------------- 1717

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 C     ++ + +  +           +Q      + ++ 
Sbjct: 1718 ------------YNLNMNLDQCLYFYNSFFEHYKGIYRWH----NQIKQMRALEYSTLSN 1761

Query: 542  KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            ++   P                                                K     
Sbjct: 1762 RKVIFPYFSFT-------------------------------------------KALNYP 1778

Query: 602  VQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTS 653
            VQ    DIL   ++   K        I+L VHDEI+ E      E    +L   M +
Sbjct: 1779 VQGTCADILKLSLVELYKNLRPINGKIILCVHDEIIIEVDKKYQEDALKILVESMEN 1835


>gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9]
          Length = 960

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 106/659 (16%), Positives = 198/659 (30%), Gaps = 140/659 (21%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           D    + D  HD      L+  L+    T+  H       +L    NL +P+     T +
Sbjct: 415 DGHAVVVD-PHDEQYHMALQRILDTYAATLSVHGYKEHLHMLG-AVNLRLPMV-LFDTNL 471

Query: 99  LARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
                       +L+   +       +     E        +      DR    +     
Sbjct: 472 AGYLIDPDFQGGSLQDCADHFLHRHAEEVTETEQGTLDIGMDDERAERDRKVVRNAAIVS 531

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           L        +        +   L   E         +   G  VD A    L ++   E 
Sbjct: 532 LLARTLARQLEQ----RCQYSLLRDIELPTSVALFHMEHTGASVDRARLDELLEMFTDES 587

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTP 271
            +++Q         V + +  ++L   LF E GL+    T+    +T  + L++    + 
Sbjct: 588 NRMEQICYEAAGHEV-NLQSPKQLGVVLFEEMGLNPTKKTKRGSYSTNAKALTTLYATSE 646

Query: 272 Q-------AIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCV 323
           +          +  +R   ++   + + TL++A+N  DGR+  T     A+ TGR S   
Sbjct: 647 EGSRPNEFLGALLRHR-EVNKLRQI-VQTLIDAINPRDGRIHTTFTQTVAA-TGRLSSVD 703

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLA 382
              QN+P  + +  +                         +RS  +  EG   L+ AD +
Sbjct: 704 PNLQNIPNRNATGRD-------------------------IRSAFVPGEGFADLLSADYS 738

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            +E R++A ++G++  +KAF++G D +    +  + +   +VT DQR   K M   L Y 
Sbjct: 739 QVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYG 798

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                      +  L + +                                         
Sbjct: 799 -----LSTYGLSQQLGIPS---------------------------------------KE 814

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
              ++  + Q   +V +    L      T                               
Sbjct: 815 AAALRSRYFQTFGKVHDYLESLVSNARNT--------------------------GYTQT 848

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             GR   +  + +             R            +Q  + DI+   M+   +A  
Sbjct: 849 MFGRRRYFPALTSAN---RVARDAAERGALNAP------IQGTAADIMKIAMIRVDRALR 899

Query: 621 ----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
                  IVL +HDE+V E    +E   + L    M    + A  +PL         ++
Sbjct: 900 DGNLNSRIVLQIHDELVVELAPGEEKRVTELVRDAMEHAVNIA--VPLDVSTGVGSDWQ 956


>gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029]
 gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138]
 gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029]
 gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39]
 gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138]
          Length = 870

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 96/646 (14%), Positives = 199/646 (30%), Gaps = 132/646 (20%)

Query: 42  VELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           V           +  +LK+     D+T   +N   +   L     + I    +    +  
Sbjct: 340 VFFIALEEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIVIREISY-DLALAE 397

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGE 159
                   +      +           E   RF K   +  L     P   E  +  F  
Sbjct: 398 HLTNGGGKISFQSLLVNHG------FTETAHRFAKEWGNSGLPIGRLPEQPEQYFGEFVA 451

Query: 160 YC--KGDVTVTREIFKRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           Y     D  +     K L  +    E  L  +  ++   G  +DV     L  + + E  
Sbjct: 452 YLPIIKDAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELA 511

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            L +E+  L+     + +  ++L   L+ E GL   D  ++T   VL + +   P   ++
Sbjct: 512 VLTEEIYDLSGRP-FNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKL 570

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R    +     +  L + ++S   R+  +    GA  TGR +      QN+P  S  
Sbjct: 571 LAFR-TIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGA-VTGRLACRDPNLQNIPIRSER 628

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAG 394
                                       +R    ++ +    + AD + IE R LA ++ 
Sbjct: 629 G-------------------------ILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQ 663

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++    AFE+GED++  T ++ F+V   QV+K+QR   K +                   
Sbjct: 664 DKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVN------------------ 705

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                     F     +     A          + + +A+  ++
Sbjct: 706 --------------------------FGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRY 739

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             ++     + +  +Q  ++ +      R  +                          + 
Sbjct: 740 PEIAHF---VEETIQQAAKDLRVTTMLGRERI--------------------------ID 770

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTV 628
           +   +  +      R  + G       +Q  + +++   M++        +    ++L +
Sbjct: 771 SWNEFPGS------RAAS-GRFAVNTRIQGSAAELIKLAMLDISQAIKQQQMKSRMLLQI 823

Query: 629 HDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
           HDE++ E P+ +      L    M S  +    +P+       K +
Sbjct: 824 HDELLFEVPEEEIEEMQRLVREKMESAMT--LSVPIVVNILIGKNW 867


>gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1]
 gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1]
 gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2]
 gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1]
 gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2]
 gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1]
 gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2]
 gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1]
 gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1]
 gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1]
 gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4]
 gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1]
 gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3]
 gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3]
 gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1]
 gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1]
 gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1]
 gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2]
 gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1]
 gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1]
 gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2]
 gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1]
 gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2]
 gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3]
 gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2]
 gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3]
 gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1]
 gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1]
 gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1]
 gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2]
 gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3]
 gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2]
 gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2]
 gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1]
 gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3]
 gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2]
 gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1]
 gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1]
 gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2]
 gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1]
          Length = 892

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 99/657 (15%), Positives = 182/657 (27%), Gaps = 135/657 (20%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D   V H++      L      ++  
Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 407

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K            +    +      L        
Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460

Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               R        DV     E     E L   E  +     ++   G  VD  +   L  
Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266
             D   T+  QE      G   +    ++L+  LF +  +     T++   T    L+  
Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P    +  +R          ++ L++ +  DGR+  T     A  TGR S    
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383
             QN+P  +                              +R   +  EG + L+ AD + 
Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 671

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  K M        
Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +   +  +  +V E    L +  +Q    G                            
Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
            GR     D+ +             R            +Q  + D++   M+   +    
Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832

Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +E     +  + M         +PL       + +
Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887


>gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 849

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/632 (13%), Positives = 179/632 (28%), Gaps = 134/632 (21%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLP 106
             D  + + L   L++  +  V ++      +L    F     +      ++ +      
Sbjct: 342 TADKGIVEKL---LKDQGIQKVVYDLK---NILHRVDFGDTYQLKNCNDVMLASYVLDST 395

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            +   +               +             L         +              
Sbjct: 396 RSSYDLETLFISYLNTDIAIIKENRWAG----ATILLRNLWDELSKLID----------- 440

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
               +        + E  L  +   +   G+ V+        + ++ +  KL+ ++  + 
Sbjct: 441 ----LNSCQYVYENIEIPLVPILYEMEKIGFKVNKNTLQEYTKEIESKLLKLETQIYQIA 496

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                +    ++L   LF +  L +   T+   +T   VL            + + RM  
Sbjct: 497 G-EWFNINSPKQLSYVLFEKLKLPVVKKTKTGYSTDAEVLEELYDKHEIVPLILDYRMY- 554

Query: 284 SRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           ++        L++A+NS  GR+       G + TGR +      QN+P            
Sbjct: 555 TKILTTYCQGLMQAINSVTGRVHSNFIQTG-TATGRLASAESNLQNIPVKYDEGR----- 608

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R   I  EG  L+ AD + IE R+LA ++ ++  + AF
Sbjct: 609 --------------------LIRKAFIPEEGYVLIDADYSQIELRILAHISEDERLINAF 648

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           +   D++  T A  F V  +QVT   R+  K +   + Y            +  + ++  
Sbjct: 649 KNNLDIHSQTAAEIFGVDVSQVTPTMRSQAKAVNFGIIYGIS-----DYGLSKDIKISRK 703

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                 N   E++   + +   + +   E+           +R  K  +  +  +     
Sbjct: 704 EAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTLFNR--KRYIKDIKSTNKNLRNY-- 759

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +    +   G A    K   +                      VYR +         
Sbjct: 760 -AERIAMNSPIQGSAADIMKIAMI---------------------RVYRRLKEENLKSR- 796

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
                                     I+               L VHDE++ E+P  ++ 
Sbjct: 797 --------------------------II---------------LQVHDELLIESPYEEKE 815

Query: 643 NASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
               +    M +  S    +PL  E  E   +
Sbjct: 816 IVKEIVKTEMENAVS--LKVPLVVEVKEGLNW 845


>gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183]
 gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183]
          Length = 870

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 97/646 (15%), Positives = 200/646 (30%), Gaps = 132/646 (20%)

Query: 42  VELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           V           +  +LK+     D+T   +N   +   L     + I    +    +  
Sbjct: 340 VFFIALEEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIVIREISY-DLALAE 397

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGE 159
                   +      +           E   RF K   +  L     P   E  +  F  
Sbjct: 398 HLTNGGGKISFQSLLVNHG------FTETAHRFAKEWGNSGLPIGRLPEQPEQYFGEFVA 451

Query: 160 YC--KGDVTVTREIFKRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           Y     D  +     K L  +    E  L  +  ++   G  +DV     L  + + E  
Sbjct: 452 YLPIIKDAILEEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELA 511

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            L +E+  L+ G   + +  ++L   L+ E GL   D  ++T   VL + +   P   ++
Sbjct: 512 VLTEEIYDLSGGP-FNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKL 570

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
              R    +     +  L + ++S   R+  +    GA  TGR +      QN+P  S  
Sbjct: 571 LAFR-TIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGA-VTGRLACRDPNLQNIPIRSER 628

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAG 394
                                       +R    ++ +    + AD + IE R LA ++ 
Sbjct: 629 G-------------------------ILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQ 663

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++    AFE+GED++  T ++ F+V   QV+K+QR   K +                   
Sbjct: 664 DKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVN------------------ 705

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                     F     +     A          + + +A+  ++
Sbjct: 706 --------------------------FGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRY 739

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             ++     + +  +Q  ++ +      R  +                          + 
Sbjct: 740 PEIAHF---VEETIQQAAKDLRVTTMLGRERI--------------------------ID 770

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTV 628
           +   +  +      R  + G       +Q  + +++   M++        +    ++L +
Sbjct: 771 SWNEFPGS------RAAS-GRFAVNTRIQGSAAELIKLAMLDISQAIKQQQMKSRMLLQI 823

Query: 629 HDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
           HDE++ E P+ +      L    M S  +    +P+       K +
Sbjct: 824 HDELLFEVPEEEIEEMQRLVREKMESAMT--LSVPIVVNILIGKNW 867


>gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN]
          Length = 870

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 92/645 (14%), Positives = 195/645 (30%), Gaps = 130/645 (20%)

Query: 42  VELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           V           +  +LK+     D+T   +N   +   L     + I    +    +  
Sbjct: 340 VFFIALEEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIVIREISY-DLALAE 397

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGE 159
                   +      +           E   RF K   +  L     P   E  +     
Sbjct: 398 HLTNGGGKISFQSLLVNHG------FTETAHRFAKEWGNLGLPIGRLPEQPEQYFGELVA 451

Query: 160 YC--KGDVTVTREIFKRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           Y     D  +     K L  +    E  L  +  ++   G  +DV     L  + + E  
Sbjct: 452 YLPIIKDAILEEINRKNLNHILSDIEMPLEKVLVSMERAGVPLDVEELAILEALFETELA 511

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
            L +E+  L+     + +  ++L   L+ E GL   D  ++T   VL + +   P   ++
Sbjct: 512 VLTEEIYDLSGRP-FNIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKL 570

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R    +     +  L + ++S  +          + TGR +      QN+P  S   
Sbjct: 571 LAFR-TIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGTVTGRLACRDPNLQNIPIRSERG 629

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCV-IASEGKKLVVADLAGIEARVLAWMAGE 395
                                      +R    ++ +    + AD + IE R LA ++ +
Sbjct: 630 -------------------------ILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQD 664

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +    AFE+GED++  T ++ F+V   QV+K+QR   K +                    
Sbjct: 665 KSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVN------------------- 705

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                    F     +     A          + + +A+  ++ 
Sbjct: 706 -------------------------FGIVYGQQAFGLAKVLKISVGEAQELIQAYFSRYP 740

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            ++     + +  +Q  ++ +      R  +                          + +
Sbjct: 741 EIAHF---VEETIQQAAKDLRVTTMLGRERI--------------------------IDS 771

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVH 629
              +  +      R  + G       +Q  + +++   M++        +    ++L +H
Sbjct: 772 WNEFPGS------RAAS-GRFAVNTRIQGSAAELIKLAMLDISQAIKQQQMKSRMLLQIH 824

Query: 630 DEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
           DE++ E P+ +      L    M S  +    +P+       K +
Sbjct: 825 DELLFEVPEEEIEEMQRLVREKMESAMT--LSVPIAVNILIGKNW 867


>gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 914

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 91/689 (13%), Positives = 213/689 (30%), Gaps = 137/689 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQVL- 57
            L ID E  S ++  K  +  Y +   +    +      +D     +   H  ++ + + 
Sbjct: 341 VLIIDSE--SSLNEQKEYLANYKKIASIYYESLGIIISTEDKD-FYFPLNHGGLLAKNID 397

Query: 58  ----KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
                  +   D+  +++N       L     +      ++  ++        + +  + 
Sbjct: 398 KNLVVNFISQLDIKFISYNFK----ALLN-LGISFK-SMYMDMMIAYHLISSQTKIDPII 451

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
              + S  + ++ K    +          + +       +  +   Y + +     +   
Sbjct: 452 AITEYSKLEPKDFKATFGKVNVELITTQDFSKYLS--DISIGILAIYDELNYL--LKKED 507

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
             + L   E  L  +   +  +G  +DV      +  +D E  ++++ +         + 
Sbjct: 508 LYKVLMENEMPLIPVLSLMERKGIEIDVQYFKNYSVELDKELLRIEKAIYEEAG-EEFNI 566

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF++  L     T+   +T   VL   +       ++  +  + ++     
Sbjct: 567 NSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTY 626

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++TL   ++ + R+  +   +G + TGR S      QN+P  +    +            
Sbjct: 627 VDTLPLLVDENSRIHTSFNQIG-TATGRLSSSDPNLQNIPVKTDDGIK------------ 673

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R   IA EGK L+  D + +E RVL  M+ ++  ++A+   +DL+ 
Sbjct: 674 -------------IREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHD 720

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T  R FN+A ++                                             + 
Sbjct: 721 LTARRIFNLADSET-------------------------------------------VSR 737

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                    NF     +     A E            K + +++ RV+    E+ +  E+
Sbjct: 738 EQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEE 797

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                                     +  +    GR      + +      T   Q  R 
Sbjct: 798 --------------------------HGYVKTLFGRKRYISGIDSKN---KTIKSQAERM 828

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                     ++Q  + ++L + M+        K    ++L VHDE++ E   +     S
Sbjct: 829 A------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEKSSVEKYS 882

Query: 646 ML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
            +   +M +     + + L       K +
Sbjct: 883 EILADIMKNTVQL-EDVKLNININIGKNW 910


>gi|118855|sp|P19822|DPOL_BPT5 RecName: Full=DNA polymerase
 gi|215988|gb|AAA32561.1| polymerase [Enterobacteria phage T5]
          Length = 829

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/696 (12%), Positives = 177/696 (25%), Gaps = 157/696 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62
           +  D ET             Y  D  ++  +    ++     D      V    L++ L+
Sbjct: 135 VAFDSETS----------ALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 184

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLARSNGL---PSALKAVGEA 115
           + + TIV HN  F+    K    L         R   T++             LK++   
Sbjct: 185 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 244

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                       EL            +   +       + +   Y   D   T  +    
Sbjct: 245 YTDMGDYD---FELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFF 301

Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223
            P   K                   Q + DRG  + +         +     K  ++L  
Sbjct: 302 LPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYT 361

Query: 224 -------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271
                          +   +++L+  LF   GL           ++T    L+      P
Sbjct: 362 YPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELATQHP 421

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            A  +   R + ++     +  ++ ++++DG +R        +     S      Q LPR
Sbjct: 422 IAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQLPR 480

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                                           ++ CV+A  G +++  DL   E    A 
Sbjct: 481 D----------------------------ESIIKGCVVAPPGYRVIAWDLTTAEVYYAAV 512

Query: 392 MAGEQWKLKAFETGEDLYVTTYA------------RSFNVAPAQVTKDQRAIGKVMELAL 439
           ++G++   + F    +                   +       ++    R   K +   +
Sbjct: 513 LSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGI 572

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  G            +N        KT     E                         
Sbjct: 573 LYGSGPAKVAH-----SVNEALLEQAAKTGEPFVE-----------------------CT 604

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +   + +  +  ++    ++ H   +                           +  
Sbjct: 605 VADAKEYIETYFGQFPQLKRWIDKCHDQIKN--------------------------HGF 638

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +    GR     ++ +    +     +              I+Q+ S D L  G ++A  
Sbjct: 639 IYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDADN 689

Query: 620 A--------GYDIVLTVHDEIVCETPDTDEFNASML 647
                       IV+ VHD +V    +      + +
Sbjct: 690 EIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 725


>gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
 gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA]
          Length = 532

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 219/694 (31%), Gaps = 181/694 (26%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
           M      F D ET S                 + L AF    + V          + + L
Sbjct: 1   MKNNEVFFFDTETDSLD----------FRTGKIKLIAFSKGLNEVVT-----TTSVDERL 45

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE-A 115
           K  L + ++  V HN+ F+    ++       ++ + CTL++A+  G    +LKA+ +  
Sbjct: 46  KSILNDKNIIKVFHNAKFDVGFFQS---KGYRVNNYHCTLLMAQVLGEEKLSLKALAKKY 102

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +   K                   +   +     E  +   +Y   DV  TR ++ +L
Sbjct: 103 LDVDMDK------------------SMQHSDNWQETEITQEHIDYAVKDVEHTRALYYKL 144

Query: 176 EPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             L           +E+        +   G  ++    +           +L+  ++ L 
Sbjct: 145 LDLLVENNLLTVYERERRALPAIVMLESNGINMEFDKWNARLDDDRRLAVELEIRIKDLL 204

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                +    ++L   + +E G+ L     +T    L+           +   R   ++ 
Sbjct: 205 NRKELNLNSPKQLVEAI-VEYGIKLH----STSDDELAKYSDEHEVIKLIRKYRRLQAKI 259

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                  L + +++DGR+R   + +G+ R+GR S    P Q +P  S             
Sbjct: 260 K-TYGEKLKKFIDNDGRIRAHWRLIGS-RSGRMSCNNPPLQAMPGNS------------- 304

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                             R   +A EG KL+ +D + IE RVLA ++ ++  +  F  G 
Sbjct: 305 ------------------REFFVADEGYKLIGSDYSQIELRVLASISKDETLISYFNNGI 346

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           DL++ T +  F     +++K++R + K +   + Y   A   QK    +G++ +      
Sbjct: 347 DLHLGTASLIFKKPIDEISKEERQVAKSLNFGIVYGITAYGIQKNLRKSGVDTS------ 400

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                                E+ +  +   + +V EL + L +
Sbjct: 401 ---------------------------------LEEAEKYRIEFLNVYPKVKELQDSLLK 427

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
           A                                +    GR                    
Sbjct: 428 A------------------------------DYIKTLGGRR------------------- 438

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA---TKAGYDIVLTVHDEIVCETPDTDEFN 643
                    +     +Q  + + L E +       K  + +V  +HDEI+ E P+ +   
Sbjct: 439 WQGGSLTMTQRLNLPIQGSAAEGLKEALALLVERMKESWRLVAVIHDEILLEVPEDEAEE 498

Query: 644 ASMLYH-LMTSNPS-WAKGLPLKAEGYESKRYRK 675
           A  +    M        K +P+  +   S  + K
Sbjct: 499 AKNILESCMVEGMKTIVKDIPIIVDSSVSNNWCK 532


>gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
 gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 937

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 102/658 (15%), Positives = 189/658 (28%), Gaps = 141/658 (21%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-CFNLDIPI-----HRWICTLVLAR 101
             DP +   ++EAL    +    H+       L A      +             L+ A 
Sbjct: 384 APDPALVAAVREALGEGGLAKAVHDLKRTLKALAAPTEGDGLGPDAALDGVVDDVLLSAY 443

Query: 102 SNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                    +L+A+ EA   +                 +        ++           
Sbjct: 444 LIQPDRRDTSLEALAEAHLHTPLAAPREPAQQRAQGTFDLDGGQAAADRAARAADAVRAA 503

Query: 159 EYCKGDVTV-TREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVER 215
              +   T  T ++  R      +E E+    L   +   G  VDV     L +      
Sbjct: 504 WVVRRLSTQFTPQVLDRGAQRLLQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAA 563

Query: 216 TKLDQELE----SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268
               +         T G+  +    ++L+  LF    +     T+   +T    L    +
Sbjct: 564 DAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLE 623

Query: 269 L--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
               P    +  +R  A++     +  L+E +  D R+  T     A+ TGR S      
Sbjct: 624 QTRHPFLENLMAHR-DATKLRQT-VEGLLETVAPDDRIHTTYSQ-TAAATGRLSSLHPNL 680

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE--GK--KLVVADLA 382
           QN+P  + +                            +R   +A E  G+   L+ AD +
Sbjct: 681 QNIPVRTEAGRR-------------------------IREVFVADEVAGEQAVLLSADYS 715

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++ ++  ++AF  GEDL+    ++ F V P +VT +QRA  K M   L Y 
Sbjct: 716 QIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYG 775

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                      +  L                                             
Sbjct: 776 -----LSSFGLSKQL---------------------------------------KISVDE 791

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
              + K +  +   V +   ++     Q                          +     
Sbjct: 792 ARGLMKGYFDRFGGVRDYLRDVVAQARQ--------------------------DGYTST 825

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617
             GR     D+ ++            R            +Q  + DI+   M++      
Sbjct: 826 IEGRRRYLPDLSSDN---RQLRDMAERAALNAP------IQGSAADIIKRAMLDVQAGLE 876

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  ++L VHDE++ E P  +   A ++L   M         +PL       + +
Sbjct: 877 EHGLASRLLLQVHDELILEVPAAELEQATALLEERMGRAAE--LSVPLDVHVGRGRSW 932


>gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
 gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9]
          Length = 885

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 84/658 (12%), Positives = 175/658 (26%), Gaps = 127/658 (19%)

Query: 29  CVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERT----VLKAC 83
             I  A    D  + +             ++E L + D+      + F+       L   
Sbjct: 338 ETIAVALATADV-IFVVPMAELQASALGFVREWLADADMEK----AGFDLHRTELSLAWH 392

Query: 84  FNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSS-QKMEEGKELIARFCKGETH 139
             + +         + A          ++  +     L + Q  E      A+F   E  
Sbjct: 393 -GIALKGIS-FDIQLAAYLLDPTDSTQSISGLCGKYGLPTVQADESVYGKGAKFKLPEAG 450

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                              +  + + T   +++         EQ L  +   +  +G   
Sbjct: 451 VLHGHIASKTDAVRSIAAIQREELEKTGMHKLYY------DLEQPLSRVLAGMELQGIRC 504

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256
           D ++   L   ++   + +  ++ +L      +     +L   LF + GL +   T+   
Sbjct: 505 DASVIEQLGAELESRISDIMTKVYTLAGM-EFNINSPRQLGEVLFEKLGLPVIKKTKTGY 563

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL   +        +   R   ++     +  L++ +  +     T      + T
Sbjct: 564 STDADVLEKLEPYHEIIPSILLFRQ-LAKLQSTYVEGLLKEIRPNTGKIHTYYRQTIAAT 622

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKK 375
           GR S      QN+P                                 +R   +    G  
Sbjct: 623 GRLSSQYPNLQNIPIRLEEGR-------------------------QIRKAFVPSEPGWF 657

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           ++ AD + IE RVLA ++G++   +AF    D++  T +  F V P  V  + R   K +
Sbjct: 658 MLAADYSQIELRVLAHISGDEGLKEAFVQDLDIHTKTASDVFGVRPEDVDANMRRQAKAV 717

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y            +  LN+               ++    +   +          
Sbjct: 718 NFGIVYGIS-----DFGLSNNLNITRKEAAQFIEQYFAAFQGVRRYMDNIVAQARTDGYV 772

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
              +     R     +  +  +        +    T   G A    K   V +    + +
Sbjct: 773 TTLL--ERRRYLPEIKASNFNIRSF---AERTAMNTPIQGTAADIIKLAMVRMDEQLRAR 827

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                     RS +   V +   +                                    
Sbjct: 828 GL--------RSRMLLQVHDELVFEVPA-------------------------------- 847

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                         DE+        E    ++  +M S       +PLKA+      +
Sbjct: 848 --------------DEL--------ELMKELVPQVMESAIK--LDVPLKADVSFGDNW 881


>gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 368

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 129/413 (31%), Positives = 185/413 (44%), Gaps = 65/413 (15%)

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R++ S+++V K N + + M SD R+RG  QF GA  TGRW+G     QNL +   S  EL
Sbjct: 3   RLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL 61

Query: 340 DQIITHLPTSITSDPD------PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           +     +      D D      P  ++S  VR+   A EG +L V+D + IEARV+AW A
Sbjct: 62  EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 121

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKM 451
            EQW+L  F T   +Y  + ++ FNV    +TK       GKV ELALGYQGGA A + M
Sbjct: 122 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 181

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                                                    A+E        + +  +WR
Sbjct: 182 G----------------------------------------ALEMGIEENELQGLVDSWR 201

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +  +   W    +A   T+++ K       R          K  L++ LPSGR+L Y 
Sbjct: 202 NANPNIVNFWKACQEAAINTVKSRKTHHTHGLR------FYMKKGFLMIELPSGRALAYP 255

Query: 572 D-VGNNRSYLNTT--------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
             +    S+ +           R+ ++  TYGGKL ENIVQA +RD+LA  +      G+
Sbjct: 256 KALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGF 315

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            IV  VHDE++ E P         +  +M     WAKGL L ++G+ S  Y K
Sbjct: 316 KIVGHVHDEVIVEIPRGS-NGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 367


>gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
 gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31]
          Length = 916

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 104/693 (15%), Positives = 217/693 (31%), Gaps = 151/693 (21%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQV----- 56
           ID ET   ++  K  +  Y +   +    +      ++  +  +   H  ++ +      
Sbjct: 346 IDNET--LLNEQKEYLNNYKKIASIYYEELGIILSTEEKDL-YFPLNHGGLLSKNIDKNT 402

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV---- 112
           L + +   DV  +++N       L                +++A           V    
Sbjct: 403 LIKFIAELDVKFISYNFK----TLLN-LGFTFKSMYMD--MMIAYHLISSQTKMDVFIPI 455

Query: 113 GEALKLSSQ--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            E   + ++  K   GK  I     GE    L             +     K       E
Sbjct: 456 TEYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKIGLGILAIYDEINHILHKE------E 509

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           ++  L      E  L  +   +  +G  +DV+     +  ++ E  K+++ +        
Sbjct: 510 LYDIL---IQNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKIEKAIYEEAG-EE 565

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF++  L     T+   +T   VL   +       ++  +  + ++  
Sbjct: 566 FNINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLK 625

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              ++TL   ++S+ R+  +   +G + TGR S      QN+P  +    +         
Sbjct: 626 TTYVDTLPNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDDGIK--------- 675

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           +R   +A EGK L+  D + +E RVL  M+ ++  ++A+   +D
Sbjct: 676 ----------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 719

Query: 408 LYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           L+  T  R FN+     VT++QR I                                   
Sbjct: 720 LHDLTARRIFNLSDSDDVTREQRTIA---------------------------------- 745

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                        NF     +     A E            K + +++ RV+    E+ +
Sbjct: 746 ----------KIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIE 795

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
             E+                          +  +    GR      + +      T   Q
Sbjct: 796 FGEE--------------------------HGYVKTLFGRKRYISGIDSKN---KTIKAQ 826

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDE 641
             R           ++Q  + ++L + M+        K    ++L VHDE++ E  ++  
Sbjct: 827 AERMA------VNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQVHDELIFEVEESSV 880

Query: 642 FNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
              S +   +M +     + + L       K +
Sbjct: 881 EKYSEILADIMKNTVKL-EDVNLNININIGKNW 912


>gi|326633006|ref|YP_004306595.1| DNA polymerase [Enterobacteria phage SPC35]
 gi|321272200|gb|ADW80092.1| DNA polymerase [Enterobacteria phage SPC35]
          Length = 855

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/696 (12%), Positives = 179/696 (25%), Gaps = 157/696 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62
           +  D ET             Y  D  ++  +    ++     D      V    L++ L+
Sbjct: 161 VAFDSETS----------ALYCRDGYLLGVSMSHQEYQGVYIDSDCLTEVAVYYLQKILD 210

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLARSNGL---PSALKAVGEA 115
           + + TIV HN  F+    K    L         R   T++             LK++   
Sbjct: 211 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                    E  +    +CK          +       + +   Y   D   T  +    
Sbjct: 271 YTDMGDYDFELDKFKDDYCKAHKI---KKEDFTYDLIPFDIMWPYAAKDTDATLRLHNFF 327

Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223
            P   K                   Q + DRG  + +         +     K  ++L  
Sbjct: 328 LPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYT 387

Query: 224 -------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271
                          +   +++L+  LF   GL           ++T    L+      P
Sbjct: 388 YPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELSTQHP 447

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            A  +   R + ++     +  ++ ++++DG +R        +     S      Q LPR
Sbjct: 448 IAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQLPR 506

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                                           ++ CV+A  G +++  DL   E    A 
Sbjct: 507 D----------------------------ESIIKGCVVAPPGYRVIAWDLTTAEVYYAAV 538

Query: 392 MAGEQWKLKAFETGEDLYVTTYA------------RSFNVAPAQVTKDQRAIGKVMELAL 439
           ++G++   + F    +                   +       ++    R   K +   +
Sbjct: 539 LSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGI 598

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  G            +N        KT     E                         
Sbjct: 599 LYGSGPAKVAH-----SVNEALLEQAAKTGEPFVE-----------------------CT 630

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +   + +  +  ++    ++ H   +                           +  
Sbjct: 631 VADAKEYIETYFGQFPQLKRWIDKCHDQIKN--------------------------HGF 664

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +    GR     ++ +    +     +              I+Q+ S D L  G ++A  
Sbjct: 665 IYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDADN 715

Query: 620 A--------GYDIVLTVHDEIVCETPDTDEFNASML 647
                       IV+ VHD +V    +      + +
Sbjct: 716 EIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 751


>gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
 gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA]
          Length = 916

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/696 (14%), Positives = 216/696 (31%), Gaps = 157/696 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           ID ET   ++  K  +  Y +   +    +      ++  +  +   H  ++ + +    
Sbjct: 346 IDNET--LLNEQKEYLNNYKKIASIYYEELGIILSTEEKDL-YFPLNHGGLLSKNI---- 398

Query: 62  ENTDVTIVAHNSYF----ERTVLKACFNLDIPIHRWI-----CTLVLARSNGLPSALKAV 112
            + +         F    +   +   F   + +           ++        + +  +
Sbjct: 399 -DKNTL-----IKFISELDVKFISYNFKTLLNLGFTFKSMYMDMMIAYHLISSQTKMDVI 452

Query: 113 ---GEALKLSSQ--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
               E   + ++  K   GK  I     GE    L             +     K     
Sbjct: 453 IPITEYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKIGLGILAIYDEINHILHKE---- 508

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
             E++  L      E  L  +   +  +G  +DV+     +  ++ E  K+++ +     
Sbjct: 509 --ELYDIL---IQNEMPLIPVLSLMERKGIKIDVSYFKNYSSELEKELAKIEKSIYEEAG 563

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    ++L   LF++  L     T+   +T   VL   +       ++  +  + +
Sbjct: 564 -EEFNINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLN 622

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     ++TL   ++S+ R+  +   +G + TGR S      QN+P  +    +      
Sbjct: 623 KLKTTYVDTLPNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDDGIK------ 675

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                              +R   +A EGK L+  D + +E RVL  M+ ++  ++A+  
Sbjct: 676 -------------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYRE 716

Query: 405 GEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            +DL+  T  R FN+     VT++QR I                                
Sbjct: 717 EKDLHDLTARRIFNLSDSDDVTREQRTIA------------------------------- 745

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                           NF     +     A E            K + +++ RV+    E
Sbjct: 746 -------------KIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKE 792

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           + +  E+                          +  +    GR      + +      T 
Sbjct: 793 VIEFGEE--------------------------HGYVKTLFGRKRYISGIDSKN---KTI 823

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPD 638
             Q  R           ++Q  + ++L + M+        K    ++L VHDE++ E  +
Sbjct: 824 KAQAERMA------VNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQVHDELIFEVEE 877

Query: 639 TDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           +     S +   +M +     + + L       K +
Sbjct: 878 SSVEKYSEILADIMKNTVKL-EDVNLNININIGKNW 912


>gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H]
 gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H]
          Length = 1861

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/657 (13%), Positives = 176/657 (26%), Gaps = 143/657 (21%)

Query: 10   TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVT 67
            T   +D+   G+  +  D  + L     +++PV ++D  +     +   L+E L+N  V 
Sbjct: 1310 THCGLDIETTGLEVF--DEKIRLIQIAVENYPVIIYDMFNITKESILTGLREILKNEKVV 1367

Query: 68   IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA------VGEALKLSSQ 121
             +  N  F+   L      +  +     T + ++       +        V + L ++  
Sbjct: 1368 KIIQNGKFDAKFLMHN---NFQVDNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLD 1424

Query: 122  KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
            K ++                    +    +   +L  E CK ++            ++  
Sbjct: 1425 KQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICKENMET----------VNDI 1474

Query: 182  EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
            E +       +   G  VD+         +  E      +L++       +    +++  
Sbjct: 1475 ENKCILPICDMELNGITVDLESLKKSTNEILSELNTETSKLKAELKDEEININSQQQVLK 1534

Query: 242  WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
             L       + +            N     + + + N R    +        L + +N  
Sbjct: 1535 ALQNNNVRDISNKLIENTSDSNLKNFLNHKEVVLLRNYRR-LYKLYSAFYLKLPQHINKK 1593

Query: 302  GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
                 T      + +GR+S      Q +PR                              
Sbjct: 1594 TNKIHTTFNQLKTFSGRFSSEKPNLQQIPR-----------------------------Q 1624

Query: 362  DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R   I  +    ++AD   IE ++ A +  +   LKA+    DL+  T +       
Sbjct: 1625 KNIREIFIPQKDNIFIIADFKQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKPI 1684

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            A V K+ R I K +   L Y       +  A+T                           
Sbjct: 1685 ADVNKEDRHIAKAINFGLIYGMNYVNLKNYANTY-------------------------- 1718

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 C     ++ + +  +           +Q      + ++ 
Sbjct: 1719 ------------YNLNMNLDQCLYFYNSFFEHYKGIYRWH----NQIKQIRGLEYSTLSN 1762

Query: 542  KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            ++   P                                                K     
Sbjct: 1763 RKVIFPYFSFT-------------------------------------------KALNYP 1779

Query: 602  VQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTS 653
            VQ    DIL   ++   K        I+L VHDEI+ E      E    +L   M +
Sbjct: 1780 VQGTCADILKLSLVELYKNLKPIHGKIILCVHDEIIIEVDKKYQEDALKILVESMEN 1836


>gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
 gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum]
 gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12]
          Length = 856

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/649 (12%), Positives = 172/649 (26%), Gaps = 142/649 (21%)

Query: 32  LFAFGFDDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
             +  F +           +  + + ++  + + +V  +      +   L    N  I  
Sbjct: 337 GISLSFKEGEGYFISPFDFNNEIRKKIENIISSENVKKIGSYIQRDLHFL----NCKIK- 391

Query: 91  HRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                  + +          +L  +             G+ L       + +       K
Sbjct: 392 GDVFDVSLASYLLNPERQNHSLDIL------------IGEYLNKTSFIPQKYAGYLFPLK 439

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
               E  +  G        +   ++    PL         +  ++   G  VD      L
Sbjct: 440 SILEERIKNEG--------LEFVLYNIEIPL-------IPVLYSMEKWGIKVDKEYLKQL 484

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
           +        KL++E+  L      +    ++L   LF    L      +   +T   VL 
Sbjct: 485 SDEFCERIKKLEEEIYELAGTR-FNLNSPKQLSEVLFERLKLPSGKKGKTGYSTSSSVLQ 543

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
           +     P   ++   R    +     ++ +   +N       T      + TGR S    
Sbjct: 544 NLINAHPIVRKILQYR-ELYKLKSTYVDAIPNLVNPQTGRVHTKFNPTGTATGRISSSEP 602

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  S    +                         +R   ++ +G  LV  D + I
Sbjct: 603 NLQNIPIKSEEGRK-------------------------IRRAFVSEDGYFLVSLDYSQI 637

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ E   + AF+ GED++  T +  F V   +V    R+  K +   + Y   
Sbjct: 638 ELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEEVDDLLRSRAKAVNFGIIYGIS 697

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                    +  +++         +S  + +   + F         E        G   +
Sbjct: 698 -----SFGLSETVSITPEEAEKFIDSYFKHYPRVKLFIDKTIHEAREKLYVKTLFGR--K 750

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           R     +  + +V        +        G A    K   + +                
Sbjct: 751 RYIPEIKSINKQVRN---AYERIAINAPIQGTAADIIKLAMIEI---------------- 791

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                Y+++ N                                      ++        +
Sbjct: 792 -----YKEIENKNLKSRI-------------------------------LLQIHDE---L 812

Query: 625 VLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKR 672
           +L        E P+ +     ++    M         +PL  E    K 
Sbjct: 813 IL--------EVPEEEMEFTPLMAKEKMEKVVE--LSVPLVVEISVGKN 851


>gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411]
 gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411]
          Length = 801

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/573 (14%), Positives = 177/573 (30%), Gaps = 124/573 (21%)

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT----REIF 172
               +K     +L +     ++        +  + EA+       + +  +        +
Sbjct: 333 GFQFEKYPFDIKLASYLVNPDSKGNPRVCFENINDEAFAKLMNLSEEEAILESYPFLREY 392

Query: 173 KRLEPLS----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                L+      E  L  +  ++  RG  +D     +    +  +    ++++ +L   
Sbjct: 393 IEGNNLNFLLSQVETPLSEVLVSMEKRGIKIDSEYLTSFENELANKLYATEKQIHALAG- 451

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L+  LF + G+     T+   +T    L    +    A  +   R   S+
Sbjct: 452 EEFNINSTKELQRILFEKLGIKPIKKTKTGYSTDSESLQMLAQKYEIAQLIITYR-AISK 510

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                +   ++ M+   RL  T      + TGR S      QNLP               
Sbjct: 511 VISTYIRPFLDKMDKSNRLHTTFNQ-TLTSTGRLSSSNPNLQNLPAGDDE---------- 559

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                         +   +R  V+A +G KL+ +D + IE RVLA M+ ++  ++ F+  
Sbjct: 560 --------------LHSGIRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTLIEIFKNN 605

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           ED++  T  + F V P+ V    R + K +                    G+        
Sbjct: 606 EDIHTQTAVKIFGVHPSMVDHHLRRMAKTINF--------------GIIYGMG------- 644

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                  +   +           +  + + ++ + V      + 
Sbjct: 645 -----------------------YVSLSKTLNISKDKARQFIEKYFERFAGVKSY---IE 678

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
              E+  +NG                        +    GR   + ++ +N   L    +
Sbjct: 679 NTTEKATKNG-----------------------FVETYFGRRRYFFNINSNNKRLAQFEK 715

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDE 641
           +               +Q  + DI+   M+   +        IVL VHDE++ E  +   
Sbjct: 716 RA---------AVNATIQGTAADIIKIAMVKLYEKLKNLDAHIVLQVHDELLVEAKEDIA 766

Query: 642 FNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
            N + +    M +   +   +P+K     +  +
Sbjct: 767 ENVAGIVKDTMENAVKF--DIPIKTNTKIANNW 797


>gi|59897255|gb|AAX12050.1| DNA polymerase [Enterobacteria phage T5]
          Length = 825

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/696 (12%), Positives = 179/696 (25%), Gaps = 157/696 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62
           +  D ET             Y  D  ++  +    ++     D      V    L++ L+
Sbjct: 131 VAFDSETS----------ALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 180

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLARSNGL---PSALKAVGEA 115
           + + TIV HN  F+    K    L         R   T++             LK++   
Sbjct: 181 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 240

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                    E  +    +CK          +       + +   Y   D   T  +    
Sbjct: 241 YTDMGDYDFELDKFKDDYCKAHKI---KKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFF 297

Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223
            P   K                   Q + DRG  + +         +     K  ++L  
Sbjct: 298 LPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYT 357

Query: 224 -------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271
                          +   +++L+  LF   GL           ++T    L+      P
Sbjct: 358 YPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELATQHP 417

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            A  +   R + ++     +  ++ ++++DG +R        +     S      Q LPR
Sbjct: 418 IAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQLPR 476

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                                           ++ CV+A  G +++  DL   E    A 
Sbjct: 477 D----------------------------ESIIKGCVVAPPGYRVIAWDLTTAEVYYAAV 508

Query: 392 MAGEQWKLKAFETGEDLYVTTYA------------RSFNVAPAQVTKDQRAIGKVMELAL 439
           ++G++   + F    +                   +       ++    R   K +   +
Sbjct: 509 LSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGI 568

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  G            +N        KT     E                         
Sbjct: 569 LYGSGPAKVAH-----SVNEALLEQAAKTGEPFVE-----------------------CT 600

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +   + +  +  ++    ++ H   +                           +  
Sbjct: 601 VADAKEYIETYFGQFPQLKRWIDKCHDQIKN--------------------------HGF 634

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +    GR     ++ +    +     +              I+Q+ S D L  G ++A  
Sbjct: 635 IYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDADN 685

Query: 620 A--------GYDIVLTVHDEIVCETPDTDEFNASML 647
                       IV+ VHD +V    +      + +
Sbjct: 686 EIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 721


>gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2]
 gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/657 (15%), Positives = 183/657 (27%), Gaps = 135/657 (20%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D     +  + +    L + D   V H++      L      ++  
Sbjct: 349 AVALGGVDGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 407

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K            +    +      L        
Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460

Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               R        DV     E     E L   E  +     ++   G  VD  +   L  
Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266
             D   T+  QE      G   +    ++L+  LF +  +     T++   T    L+  
Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P    +  +R          ++ L++ +  DGR+  T     A  TGR S    
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383
             QN+P  +                              +R   +  EG + L+ AD + 
Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 671

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  K M        
Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +   +  +  +V E    L +  +Q    G                            
Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
            GR     D+ +             R            +Q  + D++   M+   +    
Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832

Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +E     +  + M         +PL       + +
Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887


>gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
 gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724]
          Length = 855

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/649 (12%), Positives = 170/649 (26%), Gaps = 142/649 (21%)

Query: 32  LFAFGFDDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
             +  F +           +  +   +K+ +   ++  +      +   L    +  I  
Sbjct: 336 GISISFKEGEGYFIASFDFNDEVKGKVKDIISFENIKKIGAYIQRDLHFL----DCKIK- 390

Query: 91  HRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                  + +          +L  +                L       + +       K
Sbjct: 391 GEVFDVSLASYLLNPERQNHSLDILIREY------------LNRTSFIPQKYAAYLFPLK 438

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
               E  +           +   +F         E  L  +  ++   G  VD     +L
Sbjct: 439 TILEERIKK--------EELEFVLFNI-------ETPLIPVLYSMEKWGIKVDKEYLKSL 483

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
           +        KL++E+  L      +    ++L   LF    L      +   +T   VL 
Sbjct: 484 SDEFCERIKKLEEEIYELAGMK-FNLNSPKQLSEVLFERLKLPSGKKGKTGYSTSSLVLQ 542

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
           +     P  I++   R    +     ++ +   +NS      T      + TGR S    
Sbjct: 543 NLLNAHPIVIKILQYR-ELYKLKSTYIDAIPNLINSQTGRVHTKFNPTGTATGRISSSEP 601

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  S    +                         +R   IA +G   V  D + I
Sbjct: 602 NLQNIPIKSEEGRK-------------------------IRRAFIADDGYYFVSLDYSQI 636

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R++A ++ E   + AF+ GED++  T A  F V   +V    R+  K +   + Y   
Sbjct: 637 ELRIMAHLSQEPKLISAFQKGEDIHRRTAAEIFGVPEDEVDDLLRSRAKAVNFGIIYGIS 696

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           +    + A     ++         +S  + +   + F         E        G   +
Sbjct: 697 SFGLSETA-----SITPEEAEKFIDSYFKHYPRVKLFIDKTIYEAREKLYVKTLFGR--K 749

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           R     R  + +V        +        G A    K   + +                
Sbjct: 750 RYIPEIRSINKQVRN---AYERIAINAPIQGTAADIIKLAMIEI---------------- 790

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                Y+++                                        ++         
Sbjct: 791 -----YKEIEEKNLKSRI-------------------------------LLQIHD----- 809

Query: 625 VLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKR 672
                 E++ E P+ +     ++    M         +PL  E    K 
Sbjct: 810 ------ELILEVPEEEMEFTPLMAKEKMEKVVE--LSVPLVVEISVGKN 850


>gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 899

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/683 (15%), Positives = 191/683 (27%), Gaps = 155/683 (22%)

Query: 20  GICKYAEDVCVILFAFGFDDHPVELWD----CVHDPVMPQVLKEALENTDVTIVAHNSYF 75
            +     D  V+  +   D     + D       D      L   L + D   V  ++  
Sbjct: 340 TLAPGRGDAQVVAVS---DGARSLVVDMTLLLAQDEEALDQL---LSDPDHPKVVADAKG 393

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG----EALKLSSQKMEEGKELIA 131
               L     + +         + A           V       L L  + + +  E   
Sbjct: 394 SWHAL-RGRGIGLD-GVVADPALAAYLCRPEQRSYDVATLAERWLGLDLESLAQ-AEPQT 450

Query: 132 RFCKGETHECLYDRNKPNHR-------EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
            F      +    R                 + GE       VT          +  E  
Sbjct: 451 AFDLESLADGTPPRTLLASARRAACLLPLQEVLGEQMAQRGAVTL--------YTELEMP 502

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           +      + D G  VD ++       +D   T   +   +     + +    ++L+  +F
Sbjct: 503 VAACLAQMEDAGIAVDDSVLAAREVELDARVTHAAEAAFAAAGHEL-NLSSPKQLQAVIF 561

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
            E  +     T+   TT    L++       P    +  +R          +  L +A+ 
Sbjct: 562 DELKMPKTRRTKRGYTTDAEALAALYAKTGHPFLEHLLEHRDAIKLRQT--VEGLRKAVL 619

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +DGR+  T Q   A+ TGR S      QN+P  +                          
Sbjct: 620 ADGRIHTTFQQTVAA-TGRLSSTDPNLQNIPARTEEGMR--------------------- 657

Query: 360 ISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R      +G++ L+ AD + IE R++A ++G+Q  + AF +GEDL+    A    
Sbjct: 658 ----IREAFTVGQGQECLLTADYSQIEMRIMAHLSGDQALIDAFRSGEDLHRYVAAMVHG 713

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           +  A VT +QR+  K M   L Y            T GL                     
Sbjct: 714 IDVADVTAEQRSHVKAMSYGLAYGLS---------TYGL--------------------- 743

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                         A +          ++ A+  +   V +    +     +        
Sbjct: 744 --------------ARQLGIDNAEASALRDAYFARFGAVHDYLESVVAQARR-------- 781

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                             +       GR     D+ ++            R         
Sbjct: 782 ------------------DGWTQTMFGRRRYLPDLTSDN---RQRREMAERAALNAP--- 817

Query: 599 ENIVQAVSRDILAEGMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLYH-LM 651
              +Q  + DI+ + M++   A         ++L +HDE++ E    +      L    M
Sbjct: 818 ---IQGSAADIVKKAMIDVADALAESALASRVLLQIHDELLLEIAPGEAEAVEELVRARM 874

Query: 652 TSNPSWAKGLPLKAEGYESKRYR 674
           +        +PL         +R
Sbjct: 875 SGAAQ--LSVPLDVSVGRGATWR 895


>gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1]
          Length = 892

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/657 (15%), Positives = 183/657 (27%), Gaps = 135/657 (20%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D     +  + +    L + D   V H++      L      ++  
Sbjct: 349 AVALGGVDGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 407

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K            +    +      L        
Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460

Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               R        DV     E     E L   E  +     ++   G  VD  +   L  
Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266
             D   T+  QE      G   +    ++L+  LF +  +     T++   T    L+  
Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P    +  +R          ++ L++ +  DGR+  T     A  TGR S    
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383
             QN+P  +                              +R   +  EG + L+ AD + 
Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 671

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  K M        
Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +   +  +  +V E    L +  +Q    G                            
Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
            GR     D+ +             R            +Q  + D++   M+   +    
Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832

Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +E     +  + M         +PL       + +
Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887


>gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
 gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1]
          Length = 829

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/628 (15%), Positives = 178/628 (28%), Gaps = 149/628 (23%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
           P+ L  AL   +   V  N       L      ++   +     +               
Sbjct: 342 PREL-PALARGNKLYVF-NLK----ELYHTVGAELKKLKTFDISLGYYLLNP-------- 387

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L       +    L+    +   H     +      +  +  G Y          ++ 
Sbjct: 388 --LLKDYSPEQVIGNLLGAKVELPVHLHHGIKAGKEVEKKLKEEGLY---------RLYA 436

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                   E  L Y+   +  RG          L + ++ + ++++ ++  L      + 
Sbjct: 437 ------EVEHPLSYVLYKMEKRGVPFSEKALMELERELEEKISEVETKIFELAG-EKFNL 489

Query: 234 RCLEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF + GL     T    +T    L++      +      +  + S+     
Sbjct: 490 NSPKQLSKVLFEKLGLKPVKKTRSGYSTDVETLTTLALEGHEIAVHILDYRKLSKLLSSF 549

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L++ ++  GR+ G     G + TGR S      QNLP                    
Sbjct: 550 VKALLKRIDETGRVHGNFIQTG-TATGRLSSAEPNLQNLP-------------------- 588

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                    +S  VR  V A EG  LV AD + +E R+LA ++ ++  ++AF  GED++ 
Sbjct: 589 -----VSDPLSLRVRRAVRAPEGYTLVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHT 643

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T    F+                                                +   
Sbjct: 644 ETAKHLFHT----------------------------------------------RQITD 657

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                    NF      +    A          +   + + QK  +V E    + +   +
Sbjct: 658 RERRVAKTVNFGIIYGMSPHGLAERLSIPLQEAKDYIERYFQKFPKVREF---IEETVRE 714

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             + G                        +    GR     ++               R 
Sbjct: 715 AYKKG-----------------------FVETAFGRRRPLPELKEKSF---HKRSFGERA 748

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNA-S 645
                     ++Q  + DI+   M+N      K    I+L VHDE+V E P+  E    +
Sbjct: 749 A------VNTVIQGTAADIMKMAMVNLQPEAEKLNSYIILQVHDELVLEAPEGAEEEVAA 802

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            +  +M         +PL  E    K +
Sbjct: 803 KVKQVMEGAA--NLSVPLTVEVKSGKEW 828


>gi|51512060|gb|AAU05259.1| DNA-directed DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/696 (12%), Positives = 179/696 (25%), Gaps = 157/696 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62
           +  D ET             Y  D  ++  +    ++     D      V    L++ L+
Sbjct: 161 VAFDSETS----------ALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 210

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLARSNGL---PSALKAVGEA 115
           + + TIV HN  F+    K    L         R   T++             LK++   
Sbjct: 211 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                    E  +    +CK          +       + +   Y   D   T  +    
Sbjct: 271 YTDMGDYDFELDKFKDDYCKAHKI---KKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFF 327

Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223
            P   K                   Q + DRG  + +         +     K  ++L  
Sbjct: 328 LPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYT 387

Query: 224 -------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271
                          +   +++L+  LF   GL           ++T    L+      P
Sbjct: 388 YPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELATQHP 447

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            A  +   R + ++     +  ++ ++++DG +R        +     S      Q LPR
Sbjct: 448 IAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQLPR 506

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                                           ++ CVIA  G +++  DL   E    A 
Sbjct: 507 D----------------------------ESIIKGCVIAPPGYRVIAWDLTTAEVYYAAV 538

Query: 392 MAGEQWKLKAFETGEDLYVTTYA------------RSFNVAPAQVTKDQRAIGKVMELAL 439
           ++G++   + F    +                   +       ++    R   K +   +
Sbjct: 539 LSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGI 598

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  G            +N        KT     E                         
Sbjct: 599 LYGSGPAKVAH-----SVNEALLEQAAKTGEPFVE-----------------------CT 630

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +   + +  +  ++    ++ H   +                           +  
Sbjct: 631 VADAKEYIETYFGQFPQLKRWIDKCHDQIKN--------------------------HGF 664

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +    GR     ++ +    +     +              I+Q+ S D L  G ++A  
Sbjct: 665 IYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDADN 715

Query: 620 A--------GYDIVLTVHDEIVCETPDTDEFNASML 647
                       IV+ VHD +V    +      + +
Sbjct: 716 EIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 751


>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
 gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
          Length = 653

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 111/707 (15%), Positives = 208/707 (29%), Gaps = 192/707 (27%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEA 60
           L ID ET         G+  +++   + L        PV + DC     +P     LKE 
Sbjct: 99  LAIDTETT--------GLDPHSD--RLRLIQISAPGIPVLVIDCAA--FLPDGFACLKEL 146

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-----PSALKAVG-E 114
           L       + HN+ F+   L     + I       T++ A+          + L  V   
Sbjct: 147 LNTPS-EKIFHNARFDLQFL---MGIGIDCFPVFDTMLAAQLLRPCGGPLKAGLAVVADH 202

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +   K E+     +    G                       Y   D  +  +++  
Sbjct: 203 YLGIKLDKTEQTGSWDSASLTGSQ-------------------LAYAALDAWILLKLYDV 243

Query: 175 LEPLSSKE---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           + PL ++                       G  +D+     L +  + +     + L + 
Sbjct: 244 MNPLLARHGLGRTASIEFACVSAIARTEYDGINLDLEKWDELRRKTEKQYDAALETLYTY 303

Query: 226 TYGL---------VSSSRCLEKLKTW---LFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
           +              +     +   +   L    G+ +   +  +            P  
Sbjct: 304 SGTPSCQLTLWGGEEALDVNFESNPYVLKLLNRYGIPVTSTSRRSLA-----PYHSQPLV 358

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +   R  +   +   L+ +   ++    RL      +GA  +GR S      Q +PR 
Sbjct: 359 QALTEYRRHSKSLSS-FLHPIPAQIHPVTHRLHPKYMQIGA-WSGRMSCYNPNIQQIPR- 415

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                           RSC  A +G+KL++AD + IE RV A +
Sbjct: 416 ----------------------------EADFRSCFTAPDGRKLILADYSQIELRVAAQI 447

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+     A + GEDL+  T +   ++  +QVTK QR   K +   L +  GA+  ++ A
Sbjct: 448 SGDSRMKSACQKGEDLHALTASLISSIPVSQVTKAQRQAAKAVNFGLIFGMGAEGLKQYA 507

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                                                   +          E+ + A+ Q
Sbjct: 508 --------------------------------------GQSYGVEMTLEEAEQFRSAFFQ 529

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            +  ++   ++L                            ++ + L     +GR      
Sbjct: 530 SYRGINWWHHDL----------------------------RESHPLEGRTLTGRKF---- 557

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTV 628
           + +  + L                L    VQ  + DIL   +         +   IV  V
Sbjct: 558 LFSPNTGL--------------ADLANTPVQGTAADILKHALGLLASRIRGSDKKIVAIV 603

Query: 629 HDEIVCETP-DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673
           HDEI+ E P +  +    +L   M          +P +A+   +  +
Sbjct: 604 HDEILMEVPVEEADDTVVLLKTAMEEAAQAILPDVPCEADAKAADSW 650


>gi|46401858|ref|YP_006950.1| DNA polymerase [Enterobacteria phage T5]
 gi|45775036|gb|AAS77168.1| DNA polymerase [Enterobacteria phage T5]
          Length = 855

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/696 (12%), Positives = 179/696 (25%), Gaps = 157/696 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALE 62
           +  D ET             Y  D  ++  +    ++     D      V    L++ L+
Sbjct: 161 VAFDSETS----------ALYCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 210

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLARSNGL---PSALKAVGEA 115
           + + TIV HN  F+    K    L         R   T++             LK++   
Sbjct: 211 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                    E  +    +CK          +       + +   Y   D   T  +    
Sbjct: 271 YTDMGDYDFELDKFKDDYCKAHKI---KKEDFTYDLIPFDIMWPYAAKDTDATIRLHNFF 327

Query: 176 EPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE- 223
            P   K                   Q + DRG  + +         +     K  ++L  
Sbjct: 328 LPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREKLYT 387

Query: 224 -------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTP 271
                          +   +++L+  LF   GL           ++T    L+      P
Sbjct: 388 YPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELATQHP 447

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            A  +   R + ++     +  ++ ++++DG +R        +     S      Q LPR
Sbjct: 448 IAKTLLEIR-KLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQLPR 506

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                                           ++ CV+A  G +++  DL   E    A 
Sbjct: 507 D----------------------------ESIIKGCVVAPPGYRVIAWDLTTAEVYYAAV 538

Query: 392 MAGEQWKLKAFETGEDLYVTTYA------------RSFNVAPAQVTKDQRAIGKVMELAL 439
           ++G++   + F    +                   +       ++    R   K +   +
Sbjct: 539 LSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGI 598

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  G            +N        KT     E                         
Sbjct: 599 LYGSGPAKVAH-----SVNEALLEQAAKTGEPFVE-----------------------CT 630

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               +   + +  +  ++    ++ H   +                           +  
Sbjct: 631 VADAKEYIETYFGQFPQLKRWIDKCHDQIKN--------------------------HGF 664

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +    GR     ++ +    +     +              I+Q+ S D L  G ++A  
Sbjct: 665 IYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDADN 715

Query: 620 A--------GYDIVLTVHDEIVCETPDTDEFNASML 647
                       IV+ VHD +V    +      + +
Sbjct: 716 EIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 751


>gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 906

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/623 (14%), Positives = 170/623 (27%), Gaps = 132/623 (21%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
               V HN+     V        +       T + A              +  L    ME
Sbjct: 397 SKPKVVHNAKGLMRVFPEH-GWSLAGVAM-DTALAAYLVKPGR------RSFALDVLSME 448

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKE 182
                +    +        D          +       GD   T  + +          E
Sbjct: 449 YLHRELQPAAQDGQLAFGSDDTAEAEALMAQARAVLDLGDA-FTGRLAEVGAAELLHEME 507

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
                L   +   G   D      + Q       +  +E  +       +    ++L+  
Sbjct: 508 LPTSELLARMERAGIAADRDHLEAMEQQFAGAVQQAVKEAHAAVGH-EFNLGSPKQLQEV 566

Query: 243 LFLETGLHLEDLTETT---CQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            F E  L     T+T        L+    +   +   +       ++  V  +  LV+ +
Sbjct: 567 FFGELDLPKTKKTKTGYTTDADALAWLATQTDHELPVIMLRHREQAKLRVT-VEGLVKTI 625

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
            +DGR+  +   + A+ TGR S      QN+P  +                         
Sbjct: 626 GADGRVHTSFSQIVAA-TGRLSSTDPNLQNVPVRTDEGRA-------------------- 664

Query: 359 IISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   +  EG + L+ AD + IE RV+A ++ ++  ++AF +GEDL+ T  ++ F
Sbjct: 665 -----IRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLHTTVASQVF 719

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            V   +V  + R   K M   L                GL+    +  +  +        
Sbjct: 720 GVERGEVDPEMRRKIKAMSYGL--------------AYGLSAFGLSQQLNID-------- 757

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                       + + + ++   V +    L +  E+    G  
Sbjct: 758 ----------------------PGEARGLMETFFERFGGVRDY---LQRVVEEARATGYT 792

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                      GR     D+ ++            R        
Sbjct: 793 QTVL-----------------------GRRRYLPDLNSDNRMRR---EAAERMALNAP-- 824

Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HL 650
               +Q  + DI+   M+   KA         ++L VHDEIV E    +      L    
Sbjct: 825 ----IQGTAADIVKVAMLRVDKAITEAGLKSRMLLQVHDEIVLEIAPGERKKVEELVRRE 880

Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673
           M +        PL         +
Sbjct: 881 MGAAVE--LRAPLDVSVGVGPDW 901


>gi|299822773|ref|ZP_07054659.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
 gi|299816302|gb|EFI83540.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601]
          Length = 903

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/653 (13%), Positives = 180/653 (27%), Gaps = 117/653 (17%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACF 84
             +I  A   D                    + + + + T     + ++     V     
Sbjct: 357 ADIIGVAISSDKGNFYY--SAATIQNSTAFADWISDPNQTK----AVYDAKKTMVTLNRL 410

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            L          ++ +        +               E  EL+  F KG  +    +
Sbjct: 411 GLPCEGI-LFDFMLASYVLDPSQTIDDFASVASRYDYTQVEADELV--FGKGAKYNVPDE 467

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
               +H     +     +  V  + E  ++LE + + E  L ++   +   G  VD    
Sbjct: 468 TKVADHLARKAVAIAKLEQTVNESLEKNEQLELVDNLELPLTFVLAKMEMEGVRVDTERL 527

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQR 261
             +   + V    ++  +  L      +    ++L   LF   GL     T+   +T   
Sbjct: 528 EEMKSEMAVRLQTIESSIHELAGTT-FNINSPKQLGVILFETLGLPPVKKTKTGYSTAAD 586

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           VL S     P   ++   R    +     +  L++  +       T      ++TGR S 
Sbjct: 587 VLESLSGKHPIIDEILLYRQ-LGKLQSTYVEGLLKVTDKKTSKVHTRFNQTLTQTGRLSS 645

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVAD 380
                QN+P       +                         +R   + S  G K+  AD
Sbjct: 646 VDPNLQNIPIRLEEGRK-------------------------IRQVFVPSHPGWKMFSAD 680

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + +E RVLA ++ ++  + AF    D++  T    F+V+ A+V    R   K +   + 
Sbjct: 681 YSQVELRVLAHISQDENLVYAFRNDYDIHTKTAMDVFHVSEAEVDSLMRRQAKAVNFGIV 740

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L +   A     +     + D + +   +  +  E    +  + 
Sbjct: 741 YGIS-----DYGLSQNLGITRKAAKDFIDRYFASYPDVKVYMEEIVRSAKEKGYVETILH 795

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
               R       ++  V        +    T   G A    K+  + +    + +     
Sbjct: 796 R--RRYIPEITSRNFNVRSF---AERTAMNTPIQGSAADIIKQAMLLMDERLESEQMEAK 850

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
           +L          V +   +                            +I           
Sbjct: 851 LLL--------QVHDELIFEAPE-----------------------AEIAKLA------- 872

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                     EI    PD           +M +    A  +PLK +      +
Sbjct: 873 ----------EI---VPD-----------VMENAV--ALSVPLKVDSAHGDSW 899


>gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46]
          Length = 330

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 117/334 (35%), Positives = 169/334 (50%), Gaps = 19/334 (5%)

Query: 6   IDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP-----QVLK 58
           ID E  S  D++KCG  KY  AED  +++ A+  D  PV   D       P     +  K
Sbjct: 3   IDIEIYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPYHADYETFK 62

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VGE L+L
Sbjct: 63  IALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKR 174
            +QK + GK LI  F   CK         RN P H  E W+ F +YC  DV V   I  +
Sbjct: 123 QNQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMAIANK 182

Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           ++     + EQ+ W  DQ INDRG  +  +L    N +    + +L ++ + +T   + +
Sbjct: 183 IKDFPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSKGELLKQAKQITD--LEN 240

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
                +L TWL  E GL + +L + T Q  L   K+ T +A ++   R++ S+++V K N
Sbjct: 241 PNSPTQLLTWLNKEQGLDIPNLQKKTVQDYL---KEATGKAKKMLEIRLQMSKTSVKKYN 297

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
            + + M SD R+RG  QF GA  TGRW+G     
Sbjct: 298 KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQL 330


>gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
 gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985]
          Length = 903

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 110/675 (16%), Positives = 198/675 (29%), Gaps = 141/675 (20%)

Query: 20  GICKYAEDVCVILFAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAHNSYF 75
           G     +     L A    D             HD      L   L +       H + +
Sbjct: 344 GGTPLKDGGRAWLIAVASPDGSGAAIKTEALTAHD---TAALGAWLADPAAPKAFHEAKW 400

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVG-EALKLSSQKMEEGKELIA 131
               L       I         + A           L  +    L+      + G++ ++
Sbjct: 401 AAHAL-RGQGFSIA-GVTTDIGLAAYIARPGQRSFQLPDLAVRYLRRQLGPDDSGQKQLS 458

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                +      +        A R  GE    DV          + L + E  L ++   
Sbjct: 459 LLDAEQDDNAEANGAVSEAA-AIRELGE-ALDDV---LAKAGSADLLHTMELPLTFVLGA 513

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           + + G  VD      L+        +  +   ++    + +    ++L+  LF E G+  
Sbjct: 514 MEEAGIAVDQDALAGLHADFSARVQQAAESAYAVIGKEI-NLGSPKQLQVVLFDELGMPK 572

Query: 252 EDLTETT---CQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
              T+T        L    +    P    +  +R  A+R        L++A+  DGR+  
Sbjct: 573 TKKTKTGHTTDADALQWLFERTEHPFLSHLLEHR-DATRLMTT-AQGLIKAVGPDGRIHT 630

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T +   A+ TGR S      QN+P  +                              +R 
Sbjct: 631 TFRQDVAA-TGRLSSTDPNLQNIPVRTEEARR-------------------------IRG 664

Query: 367 CVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             +  EG + L+ AD + IE R++A ++G++  ++AF TGEDL+    +R+F V   QV 
Sbjct: 665 VFVVGEGHEALMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNFVASRAFGVPIDQVG 724

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            + R   K M   L                GL+    A                      
Sbjct: 725 AELRRRVKAMSYGL--------------AYGLSAFGLAQQ-------------------- 750

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                         G   +   +A+  +   V +   E+    E+    G          
Sbjct: 751 ----------LGVSGEEAKAQMEAYFARFGGVRDYLREV---VEEARRKGYTETL----- 792

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                              GR     D+ ++            R            +Q  
Sbjct: 793 ------------------FGRRRYLPDLTSDNQ---QQRAVAERAALNAP------IQGS 825

Query: 606 SRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWA 658
           + DI+   M++  +A         ++L VHDE+V E  + ++   + L    M S     
Sbjct: 826 AADIIKVAMIHVAEALAARNMRSRMLLQVHDELVLEVAEGEQDELAALVAEQMGSAIE-- 883

Query: 659 KGLPLKAEGYESKRY 673
             +P+         +
Sbjct: 884 LSVPMDVSVGFGPNW 898


>gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202]
 gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202]
          Length = 931

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 98/657 (14%), Positives = 181/657 (27%), Gaps = 135/657 (20%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D     H++      L      ++  
Sbjct: 388 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 446

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K            +    +      L        
Sbjct: 447 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 499

Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               R        DV     E     E L   E  +     ++   G  VD  +   L  
Sbjct: 500 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 559

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266
             D   T+  QE      G   +    ++L+  LF +  +     T++   T    L+  
Sbjct: 560 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 618

Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P    +  +R          ++ L++ +  DGR+  T     A  TGR S    
Sbjct: 619 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 675

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383
             QN+P  +                              +R   +  EG + L+ AD + 
Sbjct: 676 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 710

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  K M        
Sbjct: 711 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 765

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 766 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 786

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +   +  +  +V E    L +  +Q    G                            
Sbjct: 787 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 821

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
            GR     D+ +             R            +Q  + D++   M+   +    
Sbjct: 822 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 871

Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +E     +  + M         +PL       + +
Sbjct: 872 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 926


>gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
 gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2]
          Length = 887

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/594 (15%), Positives = 169/594 (28%), Gaps = 137/594 (23%)

Query: 92  RWICTLVLARSNGLPSALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
           +W    + A      +           L      E  EL A               +   
Sbjct: 415 QWFDLSLAAYLLDPEARNYTWPRLRQSLFQDGRSEFAELAATLHPKARGLAALAYMRGIR 474

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
            +           D+ +                    +  ++   G  VD+         
Sbjct: 475 GQVESAHLSTLMRDLEIPL----------------IPVLVSMEQAGIGVDLDAFAGFLDD 518

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
           V  +  +L + +         + R  ++L   LF +  +   + T     +T  +VL + 
Sbjct: 519 VSTQLDELTRSIIRHAG-EPFNIRSSQQLAAILFDKLDIKEGNKTATGQRSTANQVLEAI 577

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           +   P    +   R    +     L  L + +  D RL      L A+ TGR S      
Sbjct: 578 RSRHPIVEDILEYR-MLEKLRSTYLEPLPKLVGEDSRLHTHFNQL-ATATGRLSSSQPNL 635

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P   +                             +R+C IA  G  L  AD + IE 
Sbjct: 636 QNIPIRGKHGPR-------------------------MRACFIAGPGAMLAAADYSQIEL 670

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA  +G+   + AF   ED++  T A   +  P  V  D+R   K +           
Sbjct: 671 RVLAHFSGDPALIDAFRNDEDIHTRTAALLTDKQPQDVLADERRNAKTINF--------- 721

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G+     A  +                                     +  
Sbjct: 722 -----GLIYGMGPQKLARELDI------------------------------TVNQAKEF 746

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + +  K + +   ++ +    +    +G                             GR
Sbjct: 747 IERYFDKLATLKAYYDTI---VKDAESHGFVTTLA-----------------------GR 780

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------A 620
             +  ++ +  +       Q  R+          ++Q  + DI+   M+ A K       
Sbjct: 781 RRLLPELHSRNT---QLVSQARRQA------VNTVIQGSAADIIKMAMVAAHKDKDLAAL 831

Query: 621 GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           G  ++L VHDE++ E P+     A   L  +M S    A  +PLK +    + +
Sbjct: 832 GAHVILQVHDELIIEAPEASIRPAGERLKTIMQSVADLA--VPLKVDLGLGRTW 883


>gi|309805236|ref|ZP_07699288.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
 gi|308165470|gb|EFO67701.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c]
          Length = 439

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/543 (14%), Positives = 157/543 (28%), Gaps = 131/543 (24%)

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVA 202
                  +    V V  ++  ++ P   + +           +  +   +   G  V   
Sbjct: 2   DVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQAT 61

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +DV  T L  ++  L      +    ++L   LF +  L     T+   +T 
Sbjct: 62  TLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFDKLKLTPAKKTKTGYSTS 120

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +  +P    + + R   S+     +N L++ + +DG++         + TGR 
Sbjct: 121 VDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-TLTTTGRL 178

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVV 378
           S      QN+P      +                          +R   +   +   L  
Sbjct: 179 SSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCKQDSYLFS 213

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMEL 437
            D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT   R   K +  
Sbjct: 214 CDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVN- 272

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++                                  A    
Sbjct: 273 -------------FGIVYGISD------------------------------YGLAKNLG 289

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +     + +++ ++ +       A +   E G A                    
Sbjct: 290 ISRQEAQNFINNYFEQYPQIKDYMK---AAVKLAREKGYAETIMH--------------- 331

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   R  +  D+ N             R            +Q  + DI+   M+  
Sbjct: 332 --------RRRLLPDIHNKNF---NIRSFAERTAINSP------IQGSAADIIKIAMIKM 374

Query: 618 T------KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670
                  K    ++L +HDE++ + P  +      L   +M         +PL A+    
Sbjct: 375 QSELEQRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIADANWG 432

Query: 671 KRY 673
             +
Sbjct: 433 HNW 435


>gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
 gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974]
          Length = 904

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 109/664 (16%), Positives = 198/664 (29%), Gaps = 140/664 (21%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVM-PQVLKE---ALENTDVTIVAHNSYFERTVLKACFNL 86
            L A    D             M P+ ++     L +  V    H + +    L      
Sbjct: 355 WLVAIAGADGHGAAI---RTETMTPEDVRALDGWLADPAVPKAFHEAKWATHAL-RGGGF 410

Query: 87  DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142
                    T + A           L  +    L+      + G++ ++        +  
Sbjct: 411 AEIAGVTTDTGLAAYIARPGQRSFNLPDLALRYLRRQLGPEDGGEKQLSLLDDSTGEDKE 470

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            D +         L G     DV    +     + L + E  L ++   + + G  VD  
Sbjct: 471 ADDSITEAAAIRELGG--ALDDV---LDKAGSADLLRTMELPLTFVLARMEEAGIAVDQD 525

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---C 259
               L+        +  +   S+    + +    ++L+  LF E G+     T+T     
Sbjct: 526 GLAGLHADFAARVKQAAESAYSVIGKEI-NLGSPKQLQVVLFDELGMPKTKKTKTGHTTD 584

Query: 260 QRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
              L     K   P  + +  +R  A+R        L++A+  DGR+  T +   A+ TG
Sbjct: 585 ADALQWLFEKTEHPFLLYLLEHR-DATRLMTT-AQGLIKAIGPDGRIHTTFRQDVAA-TG 641

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-L 376
           R S      QN+P  +                              +R   +  EG + L
Sbjct: 642 RLSSTDPNLQNIPVRTDEARR-------------------------IRGVFVVGEGHEAL 676

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A ++G+   ++AF TGEDL+    +R+F V   +V  + R   K M 
Sbjct: 677 MTADYSQIEMRIMAHLSGDDGLIEAFRTGEDLHNFVASRAFGVPIDEVGAELRRRVKAMS 736

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L                GL+                                  A + 
Sbjct: 737 YGL--------------AYGLS------------------------------AFGLASQL 752

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
              G   +    A+  +   V +  + +    E+    G                     
Sbjct: 753 GVSGEEAKAQMDAYFARFGGVRDYLHAV---VEEARRKGYTETL---------------- 793

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                   GR     D+ ++            R            +Q  + DI+   M++
Sbjct: 794 -------FGRRRYLPDLTSDNQ---QQRAVAERAALNAP------IQGSAADIIKVAMIH 837

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
             +A         ++L VHDE+V E  D +    + L    M S       +P+      
Sbjct: 838 VAEALAEREMRSRMLLQVHDELVLEVADGEREELAALVSEQMGSAIELL--VPMDVSVGF 895

Query: 670 SKRY 673
              +
Sbjct: 896 GANW 899


>gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2]
          Length = 892

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 100/657 (15%), Positives = 183/657 (27%), Gaps = 135/657 (20%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D   V H++      L      ++  
Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALAER-GWEVAG 407

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K            +    +      L        
Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460

Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               R        DV     E     E L   E  +     ++   G  VD  +   L  
Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266
             D   T+  QE      G   +    ++L+  LF +  +     T++   T    L+  
Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P    +  +R          ++ L++ +  DGR+  T     A  TGR S    
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383
             QN+P  +                              +R  V+  EG + L+ AD + 
Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGVVVGEGYESLLSADYSQ 671

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  K M        
Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +   +  +  +V E    L +  +Q    G                            
Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
            GR     D+ +             R            +Q  + D++   M+   +    
Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832

Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +E     +  + M         +PL       + +
Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887


>gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE]
 gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE]
          Length = 903

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 96/644 (14%), Positives = 176/644 (27%), Gaps = 135/644 (20%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
               D    Q L   + +     V HN+     V        +       T + A     
Sbjct: 374 PAELDEADEQALAAWIADPRRPKVMHNAKNALRVFPEQ-GWRLEGVSM-DTALAAYLVKP 431

Query: 106 PS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                AL A+  E L             +A                    +    F    
Sbjct: 432 GRRSFALDALAVEYLGRELAPAPSADGQLAFGADDRAEADALMAQARAVLDLGEAFAVRL 491

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           +  V  T  +          E     L   +   G   D +    + Q       +  +E
Sbjct: 492 EE-VGATGLLH-------DMELPTSILLARLERHGIAADRSHLEGMEQQFAGAVQQAVKE 543

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQAIQVF 277
             +       +    ++L+  LF E  L     T+T       +      +   +   + 
Sbjct: 544 AHAAVG-REFNLGSPKQLQEVLFGELALPKTKKTKTGFTTDADALAWLAAQTEHELPVIM 602

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                 ++  V  +  L++ +  DGR+  T     A+ TGR S      QN+P  +    
Sbjct: 603 LRHREQAKLRVT-VEGLIKTIGQDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGR 660

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQ 396
                                     +R   +  EG   L+ AD + IE RV+A ++ + 
Sbjct: 661 A-------------------------IRRGFVVGEGFETLMTADYSQIELRVMAHLSEDA 695

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF +GEDL+ T  ++ F V  + V  + R   K M   L Y              G
Sbjct: 696 GLIEAFTSGEDLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGLAY--------------G 741

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L+    +  +  ++                                   +   + Q+   
Sbjct: 742 LSAFGLSQQLNIDAG------------------------------EARGLMDTYFQRFGG 771

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +  + + +    T                                 GR     D+ ++
Sbjct: 772 VRDYLHRVVEEARAT--------------------------GYTETILGRRRYLPDLNSD 805

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHD 630
                       R            +Q  + DI+   M++  +A         ++L VHD
Sbjct: 806 N---RQRREAAERMALNAP------IQGTAADIVKVAMLHVDRALTEARLTSRMLLQVHD 856

Query: 631 EIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
           EIV E    +      +    M++        PL       + +
Sbjct: 857 EIVLEIAAGEREQVEEILRREMSTAVE--LRAPLDVSVGVGRDW 898


>gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
 gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707]
          Length = 912

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 103/667 (15%), Positives = 187/667 (28%), Gaps = 140/667 (20%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT-DVTIVAHNSYFERTVLKACFNL 86
             V   A    D               +                H +      L      
Sbjct: 360 GDVTAVAIAAPDGEGAYISTTTATPEDEAALADWLADAGRPKALHEAKRAMHAL-RGRGW 418

Query: 87  DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGK---ELIARFCKGETH 139
            +       T + A           L  +    LK   +  E G+    L+      +  
Sbjct: 419 TLAGLT-SDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEESGQQQLSLLDDEDAADAE 477

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
               +  +           +    D+  T  +          E  L  +   +   G  V
Sbjct: 478 AAEGEILRSRAVLDLAAALDTELADIEATGLLA-------DMELPLLEVLANLESTGIAV 530

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT- 258
           D    H L         +  +   ++    + +    ++L+  LF E  +     T+T  
Sbjct: 531 DTTHLHDLQSAFAARVAEAAEAAYAVIGKQI-NLGSPKQLQVVLFDELDMPKTKKTKTGY 589

Query: 259 --CQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
                 L S   K   P    +  +R  A+R  V  ++ L++ +  DGR+  T     A+
Sbjct: 590 TTDADALQSLFEKTQHPFLEHLLEHR-DATRLKVT-VDGLLKTVAEDGRIHTTFNQTVAA 647

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S      QN+P  + +                            +R   +  EG 
Sbjct: 648 -TGRLSSTEPNLQNIPVRTDAGR-------------------------QIRDGFVVGEGY 681

Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L+ AD + IE R++A ++G+   ++AF TGEDL+    +R+F V   +VT + R   K
Sbjct: 682 ETLLTADYSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVK 741

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            M   L                GL+    A  +K                          
Sbjct: 742 AMSYGL--------------AYGLSAFGLAAQLKI------------------------- 762

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                      +   A+  +   V +  +E+ +   +                       
Sbjct: 763 -----STEEARQQMDAYFARFGGVRDYLHEVVEQARK----------------------- 794

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                      GR     D+ ++            R            +Q  + DI+   
Sbjct: 795 ---VGYTETLFGRRRYLPDLNSDN---RQRREVAERAALNAP------IQGTAADIIKVA 842

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           M++  +A         ++L VHDE+V E    +      L    M +       +PL+  
Sbjct: 843 MIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVEQLVREKMAAAID--LSVPLEVS 900

Query: 667 GYESKRY 673
               + +
Sbjct: 901 VGTGRSW 907


>gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 352

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 172/392 (43%), Gaps = 60/392 (15%)

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
           + V  +    + +  +    R   SRS+V K   +++   +D R  G LQF GA+RTGRW
Sbjct: 4   ESVDDALVSASGEVKEALELRQELSRSSVAKYRKMIDVTCTDQRAHGLLQFYGANRTGRW 63

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSI---TSDPDPLQIISDCVRSCVIASEGKKL 376
           +G +   QNLPR         + +                   +S  +R+  I S+G + 
Sbjct: 64  AGRLVQVQNLPRNYLPDLAQARSLVRDGNGETLEMLYSSVPDTLSQLIRTAFIPSKGHRF 123

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKV 434
           +VAD + IEARVLAW+AGE+  L AF+ GEDLY  T +  F V   +     + R  GK+
Sbjct: 124 IVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKI 183

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
             LA GY G   A + M                                         A+
Sbjct: 184 AVLACGYNGSVGALKAMG----------------------------------------AL 203

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
           +        + +  AWR  +  + +LW+++  A  + I  G+ +          +  +K 
Sbjct: 204 KMGLSEDELQPIVDAWRAANPNIVQLWHDVDNAATRAISTGRPVTLG------NLGFEKK 257

Query: 555 KNNLILMLPSGRSLVY--RDVGNNRSYLNTTT-------RQLTREYTYGGKLTENIVQAV 605
              L + LPSGR L Y    +G NR    + T       R+  +  TYGGKL ENIVQA 
Sbjct: 258 SGMLFINLPSGRRLAYVKPGIGMNRFGGTSITYWGQGVARKWQKLETYGGKLVENIVQAT 317

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
           +RD+L E +     AG+ IV+ +HDE+V + P
Sbjct: 318 ARDLLVEAITRIENAGHRIVMHIHDEVVIDEP 349


>gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1]
          Length = 890

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 98/657 (14%), Positives = 181/657 (27%), Gaps = 135/657 (20%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D     H++      L      ++  
Sbjct: 347 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 405

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K            +    +      L        
Sbjct: 406 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 458

Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               R        DV     E     E L   E  +     ++   G  VD  +   L  
Sbjct: 459 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 518

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266
             D   T+  QE      G   +    ++L+  LF +  +     T++   T    L+  
Sbjct: 519 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 577

Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P    +  +R          ++ L++ +  DGR+  T     A  TGR S    
Sbjct: 578 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 634

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383
             QN+P  +                              +R   +  EG + L+ AD + 
Sbjct: 635 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 669

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  K M        
Sbjct: 670 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 724

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 725 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 745

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +   +  +  +V E    L +  +Q    G                            
Sbjct: 746 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 780

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
            GR     D+ +             R            +Q  + D++   M+   +    
Sbjct: 781 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 830

Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +E     +  + M         +PL       + +
Sbjct: 831 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 885


>gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1]
 gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1]
          Length = 892

 Score =  256 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 98/657 (14%), Positives = 181/657 (27%), Gaps = 135/657 (20%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D     H++      L      ++  
Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 407

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K            +    +      L        
Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFA 460

Query: 151 REAWRLFGEYCKGDV-TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               R        DV     E     E L   E  +     ++   G  VD  +   L  
Sbjct: 461 ESMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN 266
             D   T+  QE      G   +    ++L+  LF +  +     T++   T    L+  
Sbjct: 521 EFDERVTR-AQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579

Query: 267 KK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            +    P    +  +R          ++ L++ +  DGR+  T     A  TGR S    
Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA-VTGRLSSKDP 636

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAG 383
             QN+P  +                              +R   +  EG + L+ AD + 
Sbjct: 637 NLQNIPMRTEEGRR-------------------------IREGFVVGEGYESLLSADYSQ 671

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  K M        
Sbjct: 672 IEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG----- 726

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+                                  + +        
Sbjct: 727 ---------LAYGLS------------------------------AYGLSNQLKVSVGEA 747

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +   +  +  +V E    L +  +Q    G                            
Sbjct: 748 KELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL---------------------- 782

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY- 622
            GR     D+ +             R            +Q  + D++   M+   +    
Sbjct: 783 -GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKLAMLATDQKLAE 832

Query: 623 -----DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE++ E    +E     +  + M         +PL       + +
Sbjct: 833 AALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTVSIGVGRSW 887


>gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
 gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325]
          Length = 879

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/604 (11%), Positives = 159/604 (26%), Gaps = 143/604 (23%)

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                  +      + S  +                  L       E       +     
Sbjct: 394 GDVFDIKIANYLIDVTSKSEIDKIVFNY----------LGEIISSNEEIYGKGAKRSLPT 443

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVD 200
           +E       Y         E+   +     +E           ++  +   +   G  V 
Sbjct: 444 QEVLN---SYIAKIAASILEVKPLMIKSLEEENMLDLYKNIEIKVARVLANMEFEGIHVS 500

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                 ++   D     L+  + +L      +    ++L   LF + GL +   T+   +
Sbjct: 501 KKALDEMSHEFDERIKVLEGSIYTLAGS-EFNIASPKQLGVVLFEDLGLPVVKKTKTGYS 559

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   +        +   R   ++        LV+ +  +G++    +    ++TG
Sbjct: 560 TAVEVLEQLQYKHDIIPLIMEYR-TLTKLNSTYAKGLVKDITREGKIHTRYEQ-TLTQTG 617

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376
           R S      QN+P      ++                         +R   I  S  + +
Sbjct: 618 RLSSVNPNLQNIPTRIEEGKK-------------------------IRKAFIPASNDRVI 652

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +  D + IE RVLA +A ++  + AF+   D++  T +    V   +VT   R   K + 
Sbjct: 653 LSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASDVNGVPLDEVTPTMRREAKAVN 712

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             +                G++    ++                                
Sbjct: 713 FGIV--------------YGISDFGLSN------------------------------NL 728

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +   + + +    V +   ++ +  ++                          
Sbjct: 729 GITRKRAKEFIEKYLETFKGVDKYMTDIVKFAKE-------------------------- 762

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
           +  +     R     ++      +                     +Q  + DI+   M++
Sbjct: 763 HGYVETLYNRRRSLPEINAKNKII---------ANLNARIAMNTPIQGTAADIIKIAMIS 813

Query: 617 AT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669
           A       K    ++L VHDE++ +            +  +M         + LKAE   
Sbjct: 814 AYNYIEESKVDAKLLLQVHDELIFDVSKDILEEFTDKMVAIMEEAA--NLDVKLKAEASS 871

Query: 670 SKRY 673
              +
Sbjct: 872 GPSW 875


>gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
 gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219]
          Length = 862

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/592 (12%), Positives = 164/592 (27%), Gaps = 139/592 (23%)

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW--------RLFGEY 160
           L+  G  L  S   M     + +     +  +   +  +    E          +    Y
Sbjct: 379 LEKNGIYLNFSDDVMIYTSLVDSTITSFKKLKEKSEWQETIRYEEVYKKEELIEKNQAAY 438

Query: 161 CKG------DVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDVALAHTLN 208
           C         V      + +L+ ++        E  L  + + +  +G   +  +   + 
Sbjct: 439 CASVLRNLIQVDQEY--YPKLKEMNLISLYRDVELPLVTILKDMEQKGIRCEEKVLDHIA 496

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           +    +  +L++ +  +      +    ++L   L+ E  +       +T    L   + 
Sbjct: 497 EGTLAKIQELEKAIYKVVGH-EFNLNSPKQLAVVLYDELQILKGKKR-STAAGELEKIQG 554

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
           L      +   R + S+        L + + +DG++        A++TGR S      QN
Sbjct: 555 LYTVVDDILAYR-KYSKLYSTYAEGLKKYIQADGKIHTVYNQA-ATQTGRLSSSEPNLQN 612

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +        E                         +R   +  EG  LV +D   +E R+
Sbjct: 613 ISVRDEEGRE-------------------------IRKAFLPEEGCVLVSSDYHQVELRI 647

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA MA     +KAF+   D++  T    F+ +  +VT  QR   K +   +         
Sbjct: 648 LAHMAKVPNLIKAFQNEMDIHSQTAMDLFDCSLEEVTPLQRRQAKTVNFGIV-------- 699

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G++    A                                            +
Sbjct: 700 ------YGISDFGLASQ------------------------------LGVSRFEARDFIE 723

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            + + +  +      +    ++                          N  +     R  
Sbjct: 724 KYYRVYPEIKTYMESVIHFCKE--------------------------NGYVETLCHRRR 757

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGY 622
              ++ +             R            +Q  + D++   M+             
Sbjct: 758 EIPEIHDKN---KQIQAFGERAAMNAP------IQGTAADLIKLAMIQVREMIDENHLKA 808

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE++   P  +      +    M +  S    +PL +E    + +
Sbjct: 809 KMILQVHDELIFNVPLEEVEIMKTIIQKGMETAMS--LDVPLTSEISIGQTW 858


>gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836]
 gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836]
          Length = 901

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/638 (14%), Positives = 174/638 (27%), Gaps = 151/638 (23%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSALKAVGEALKLS 119
           L +       H++      L     L   +      T + A           +       
Sbjct: 385 LADPQQPKALHDAK---GPLLGFLELGWTLAGLTSDTQLSAYLARPDQRSYDLA------ 435

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHRE------AWRLFGEYCKGDV----TVTR 169
                  + L       E                        +       D+        
Sbjct: 436 ---DLTVRYLRRELRNEEADNG----QLSFDDVEGGPAADATMLRARAIADLADTLDAEL 488

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                   L+  E  L  +   +   G  VD      L +               +    
Sbjct: 489 AKQAGTALLADVELPLIDVIAAMERDGIAVDRPYLEKLEERFATGVRDAATSAYEVIGKE 548

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN--KKLTPQAIQVFNNRMRAS 284
           + +    ++L+  LF E  +     T+T   T    L +   K   P    +  +R  A+
Sbjct: 549 I-NLGSPKQLQVVLFDELQMPKTKRTKTGYTTDADSLQALFEKTEHPFLAYLLAHR-DAT 606

Query: 285 RSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           R     +  L++ ++  D R+  T     A+ TGR S      QN+P  +          
Sbjct: 607 RLRQT-VEGLLKTISPRDARIHTTFNQTIAA-TGRLSSTDPNLQNIPIRTEEGRR----- 659

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAF 402
                               +R   +  EG + L+ AD + IE R++A ++ ++  + AF
Sbjct: 660 --------------------IREAFVVGEGYESLMSADYSQIEMRIMAHVSEDEGLIDAF 699

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
            +GED +  T AR F+V P +VT++ RA  K M   L                GL+    
Sbjct: 700 NSGEDFHSVTAARVFSVQPGEVTQEMRAKIKAMNYGL--------------AYGLSAYGL 745

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           +  +K                                    + +   + ++   V +   
Sbjct: 746 SQQLKI------------------------------GVDEAKGLMDEYFERFGGVRDYLR 775

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            +     +  ++G                             GR     D+ ++      
Sbjct: 776 SI---VIEAGKSGYTETIL-----------------------GRRRYLPDLTSDN---RQ 806

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCET 636
                 R            +Q  + D++   M+              ++L VHDE+V E 
Sbjct: 807 RREMAERMALNAP------IQGSAADVIKLAMLKVDASLRSSGLKSRMLLQVHDELVFEI 860

Query: 637 PDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
              +      L    M S    A  +PL       + +
Sbjct: 861 APGEREALEELVRRDMGSAVEMA--VPLDVSVGVGRTW 896


>gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA]
 gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei]
          Length = 1808

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/670 (13%), Positives = 183/670 (27%), Gaps = 159/670 (23%)

Query: 1    MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLK 58
            +    +D ET         G+  + E   + L     +++PV ++D  +  +  +   L+
Sbjct: 1256 IKYCGLDMETT--------GLEVFGE--KIRLIQISVENYPVIIYDMFNITNNNILDGLR 1305

Query: 59   EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            + L + ++  +  N  F+   L      +  I     T + ++       +         
Sbjct: 1306 KILNDENIVKIIQNGKFDTKFLLYN---NFNITNIFDTYIASKLLDKNKNM------YGF 1356

Query: 119  SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                + E K L     K + +    +    N++        Y   D +   +++K+L   
Sbjct: 1357 KLNNIVE-KYLSVYLDKQQQNSVWNNSLLNNNQ------LFYAARDSSCLLKLYKKLSEQ 1409

Query: 179  S---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                        E +       +   G  VD+   +     +  E      +L+      
Sbjct: 1410 IKAENMQIVNDIENKCILPICDMELNGIKVDLENLNKSTDQILNELNVERDKLKKELKNE 1469

Query: 230  VSSSRCLEKLKTWLFLETGLHLE-DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              +    +++   L       L   L + T    L +          +  N  +  +   
Sbjct: 1470 DINVNSQQQILKALQDNNVRDLSNKLIDNTSDANLKNFINHNAVI--LLRNYRKLYKLYS 1527

Query: 289  LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                 L   +N       T      + +GR+S      Q +PR                 
Sbjct: 1528 AFYLKLPLHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPR----------------- 1570

Query: 349  SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                           +R   I +E    ++AD   IE ++ A +  ++  LKA+    DL
Sbjct: 1571 ------------QKNIREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDL 1618

Query: 409  YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            +  T +        ++ K+ R + K +   L Y       +  A+T              
Sbjct: 1619 HTLTASIITKKGINEINKEDRHVAKAINFGLLYGMNYVNLRTYANTY------------- 1665

Query: 469  NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                              C     ++ + +  +S          
Sbjct: 1666 -------------------------YNVKMNLDQCLYFYNSFFEHYKGLSRWH----NIV 1696

Query: 529  EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
            +QT     + ++ ++   P                                         
Sbjct: 1697 KQTKALEYSTLSNRKVVFPYFSFT------------------------------------ 1720

Query: 589  REYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFN 643
                   K     VQ    DIL   ++   K        I+L VHDEI+ E      E  
Sbjct: 1721 -------KALNYPVQGTCADILKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEA 1773

Query: 644  ASMLYHLMTS 653
              +L   M +
Sbjct: 1774 LRILVESMEN 1783


>gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC
           43243]
          Length = 879

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 95/672 (14%), Positives = 184/672 (27%), Gaps = 138/672 (20%)

Query: 20  GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVT---IVAHNSYF 75
           G+    ED CV   A   +D+ V          + +  LK  + +       I   N   
Sbjct: 324 GLKLLYEDGCVSGAALAHEDNSVCYIPV--QGFVTEDYLKAKITDMAAVCDCIAGLNIKS 381

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGE-ALKLSSQKMEEGKELIA 131
               +           + I   + A          +   +    L +      E    ++
Sbjct: 382 VLPAIDRQV-----YPKLIDAGLGAYLLNPLKESYSYDELARDYLNMLLPNRNELTGRMS 436

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--TVTREIFKRLEPLS--SKEQELWY 187
                        R              YC       ++ ++ +          E  L +
Sbjct: 437 YAEASMVKSEELAR--------LACMEAYCVRHAWNVISVKLDEVQMKHLFDDIEMPLVF 488

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  VD          +    T+L+  +  L      +    ++L T LF + 
Sbjct: 489 VLYDMECEGIMVDSKGLKEYGDKLATRITELENTIYELAGTK-FNINSPKQLGTVLFEDM 547

Query: 248 GLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
            L     T++   T   VL       P   ++   R   ++      + L   +  DGR+
Sbjct: 548 KLPSGKKTKSGYSTAADVLEKLAPEYPVVAKILEYRQ-LTKLKSTYADGLAVYILEDGRI 606

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
            G       + TGR S      QN+P                                 +
Sbjct: 607 HGHFNQ-TITATGRISSTEPNLQNIPVRMEIGR-------------------------QI 640

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +   G   + AD + IE R+LA M+ +   + A+ T +D++  T ++ F+V   +V
Sbjct: 641 RKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAITASQVFHVPLDEV 700

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T+ QR+  K +   + Y            +  L+++              +   + F   
Sbjct: 701 TRTQRSNAKAVNFGIIYGIS-----SFGLSQDLSISRKEASEYIEQYFATYPHIKEFIDG 755

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
           +  +  ++                                                 +RR
Sbjct: 756 LVASAKKNGYSTTMF-----------------------------------------GRRR 774

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT--ENIV 602
            VP +                       +  N     +    +        +     N  
Sbjct: 775 PVPELNSSNFMQRQFGE----------RIAMNSPIQGSAADIIKIAMINVSRALKDNN-- 822

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGL 661
                  L   M+          L VHDE++ ET + +      +    MT+  S    +
Sbjct: 823 -------LKSKMI----------LQVHDELLIETYEDEVDAVRQILIDNMTNAAS--LRV 863

Query: 662 PLKAEGYESKRY 673
           PL+ +  E   +
Sbjct: 864 PLEVDVKEGHDW 875


>gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
 gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185]
          Length = 908

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/662 (14%), Positives = 192/662 (29%), Gaps = 143/662 (21%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQ-----VLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            FA              H P+  +      +KE   N+D   + +N      +L     +
Sbjct: 366 GFAVSSLKDD-FYLPLGHTPLFHKNLDFNKIKEFFRNSDSKFITYNFK---PLLN--EGV 419

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEAL------KLSSQKMEEGKELIARFCKGETHE 140
           +I        ++ A         + V   L       ++    + GKE        E  +
Sbjct: 420 EIKNMDV-DLMI-AYHLISSQTKEGVEIPLEQLSGIDIAPYSEKFGKEAPGNLSTEEYGK 477

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
            L +R+K           E    D+    E           E  L  +   +  +G  +D
Sbjct: 478 FLTERSKGIMETYGIAMEEIKGKDLLEVLE---------KTEMPLIKVLSAMERKGIKID 528

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                   + +++  + L +++  +      +    ++L   LF +  L     T+   +
Sbjct: 529 PVYFAKYEKELEILLSDLQKKIFEIAG-EEFNLNSPKQLAEVLFFKLNLDPVKKTKTGLS 587

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T + VL   K    +         + ++     ++ L + ++S  RL  T   +G + TG
Sbjct: 588 TDEEVLEKLKSDGVEIASYILEYRKYAKLKNTYVDALPKLVDSKDRLHTTFNQIGTT-TG 646

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P  +    +                         +R   IA  G  L+
Sbjct: 647 RLSSSNPNLQNIPVKTDEGMK-------------------------IRQGFIADSGNVLM 681

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
             D + IE RVLA ++ ++  + A++  EDL+  T  + F                    
Sbjct: 682 GIDYSQIELRVLAELSKDENLIAAYKNNEDLHRVTAKKIF-------------------- 721

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                                        + +          NF     +     + E  
Sbjct: 722 -----------------------ELGEGEEVSREQRIIAKTINFSIIYGKTAFGLSKELG 758

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                       + +++ RV +    +    E+                          N
Sbjct: 759 IPQKEATDYINRYFEQYPRVKDFERSIIDYAEK--------------------------N 792

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR  +   + +          Q  R          +++Q  + +IL + M+  
Sbjct: 793 GYTETYFGRRRIIEGIISKN---KNIKNQAERMA------VNSVIQGTAAEILKKVMIEI 843

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESK 671
                 K    ++L VHDE++ E  +        +   +M ++  +   + L       K
Sbjct: 844 FKVIDGKEDISLLLQVHDELIFEIKEEKVEEYRTIIENIMRNSVKF-NDVVLDINTNIGK 902

Query: 672 RY 673
            +
Sbjct: 903 NW 904


>gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 879

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/685 (14%), Positives = 203/685 (29%), Gaps = 146/685 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
           +ID  T S       G+     D  V                   D +    L E L + 
Sbjct: 320 WID--TNSAHGSAPLGLTVAIVDGTVTGLGLATATETAF-VPWAADRLDYVALTEWLASD 376

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GEALKLSSQKM 123
                 H+S  +  +  +   LDI       T++           + +  +      + +
Sbjct: 377 A-PKFMHSSKAQLKI-ASANGLDIAGIA-FDTMLAGWVLKPGGKPEELEAQVYNYLGETI 433

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAW--RLFGEYCKGDVTVTREIFKRLEPLSSK 181
           ++G                          +W      EY  G +     +          
Sbjct: 434 DQG---------DPNQLVPETEALSPATLSWYVVRVAEYLAGRLD-EGSLGVLT----DI 479

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +   G  V+  L   L+  +     ++ +    +    + +    ++L+ 
Sbjct: 480 EMPLVPVFARMERTGIAVNQQLLLDLSASLTETAQEVARNAFEVIGREI-NLGSPKQLQE 538

Query: 242 WLFLETGLHLE---DLTETTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVE 296
            LF +  +          +T    L+  ++    P    +  +R       +  +  + +
Sbjct: 539 VLFTQLEMPKTRANKTGYSTDAASLADLQEQAPHPFLNLLLQHRDATKLVQI--ITGIEK 596

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           A++  GR+  T +  G+  TGR +      QN+P  + +                     
Sbjct: 597 AIDDSGRVHTTYEQAGS-STGRIASNDPNLQNVPIKTATGR------------------- 636

Query: 357 LQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +RS   A  G   L+ AD + IE R++A ++G++  ++AF  GEDL+    +R
Sbjct: 637 ------QIRSAFEAGAGFDTLLTADYSQIEMRIMAHLSGDEGLIQAFNEGEDLHRFVGSR 690

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V PA+VT + R   K M   L Y              GL+    +  ++  ++    
Sbjct: 691 IFGVEPAEVTAEMRTKVKAMSYGLAY--------------GLSAFGLSKQLRIETS---- 732

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                                       + +   +  +   V +    +    EQ   +G
Sbjct: 733 --------------------------EAKALMTDYFARFGAVRDYLRNV---VEQARTDG 763

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                                        GR   + D+ +             R+     
Sbjct: 764 YTTTI-----------------------FGRRRPFGDLNSKN---RVLRDNAERQA---- 793

Query: 596 KLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLY- 648
               + +Q  + DIL   M+              ++L VHDE+V E    +    + +  
Sbjct: 794 --LNSPIQGSAADILKLAMLRIDSDMRVEGLKSRMLLQVHDELVFEIAGGELERMTTIVH 851

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
             M+   S    +PL  +      +
Sbjct: 852 ERMSGAAS--LSVPLDVQIGTGHNW 874


>gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14]
          Length = 855

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 112/799 (14%), Positives = 212/799 (26%), Gaps = 214/799 (26%)

Query: 5   FIDFETRSPIDLTKCGI---CKYAEDVCVILFA----FGFDDHPVELWD-CVHDPVMPQV 56
             D E  + ID+   G     K +     I         + + P    D   +     + 
Sbjct: 137 ACDTE-VADIDVKSVGPVGNGKVSLQFEDIALYDGPDVNYGNGPYIWVDNLDNAEGTLEY 195

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNG------LPSAL 109
            +  LE++ +  V HN  F+R VL       I +      T+ +AR            +L
Sbjct: 196 FRAFLEDSSLKKVWHNYSFDRHVLFNH---GINVQGLHGDTMHMARLWNTARFKRGGYSL 252

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR------LFGEYCKG 163
           +A+   L    +K    KEL       +      ++  PN  +  R       +  Y   
Sbjct: 253 QALTSDLLHQRKKNM--KELFGTPKPRKDGSPGKEKTIPNVADLQRCADFRSRWIRYSVF 310

Query: 164 DVTVTREIFKRLEPLSSKEQ--------------------------ELWYLDQTINDRGY 197
           D   T  + + L+                                         I  +G 
Sbjct: 311 DAESTWFLHRVLQHKLELTHWIEDADVLTGQQVDRSMYEFYLKYLVPFGECLTDIERKGM 370

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR-----CLEKLKTWLFLET----- 247
            VD A    + +    +R +L+Q + +        +         + +  LF        
Sbjct: 371 NVDRAYLRRVEKTALNDRKRLEQHVLTWAKRYCEEADRMNVYSAAQKQQLLFAPYSDAQG 430

Query: 248 ---------------------GLHLEDLT--------------------ETTCQRVLSSN 266
                                G                            +    VL   
Sbjct: 431 KAILPAERSFEVENTEQHIEPGKQRPKKKRNITIRGFGLTPISFTASGLPSVTASVLEEL 490

Query: 267 KKLTP-----------------------QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
                                        A++        +      +  L E  +S GR
Sbjct: 491 AGNPEANPPKYGKAYDHFADKEEGAAACHALRALYEISSINTMLNNFILPLQELADSAGR 550

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +  +L     + TGR S      QN P                          L+     
Sbjct: 551 VHCSLNLN--TDTGRLSSRKPNLQNQP-------------------------ALEKDRYK 583

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A +GKKL+VAD + +E R+LA +   +  ++AF  G D +  T    ++     
Sbjct: 584 IRDAFVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYD----- 638

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                  + K +E         +   +   T G +      L +  +   +     NF  
Sbjct: 639 ------NVAKAVE-------SGEVLLEWDYTKGTS-PPVPLLKEKFATERKNAKILNFSI 684

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
              +     + +         ++   W      V +   +      +             
Sbjct: 685 AYGKTPFGLSKDFGVRRVEASKILDKWYGGRQEVRKWQEQAIDTARK------------- 731

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                                GR     D  + +N            R            
Sbjct: 732 -------------FGYTRTLMGRYRRLPDAMLKSNSFISRKAQSHAERAA------VNTP 772

Query: 602 VQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN 654
           +Q  + D++ + M+   K       G+++V  +HDEI+ E P+ +   A  +   LM + 
Sbjct: 773 IQGAAADLVMQAMLRINKNSRLRSMGWEMVCQIHDEIILEGPEDNAEEAKAIVKDLMENP 832

Query: 655 PSWAKGLPLKAEGYESKRY 673
                 + L+ +    + +
Sbjct: 833 FEHPLSVDLQVDAKIDRSW 851


>gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S]
 gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S]
          Length = 912

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 103/667 (15%), Positives = 187/667 (28%), Gaps = 140/667 (20%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT-DVTIVAHNSYFERTVLKACFNL 86
             V   A    D               +                H +      L      
Sbjct: 360 GDVTAVAIAAPDGEGAYISTTTATPEDEAALADWLADAGRPKALHEAKRAMHAL-RGRGW 418

Query: 87  DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGK---ELIARFCKGETH 139
            +       T + A           L  +    LK   +  E G+    L+      +  
Sbjct: 419 MLAGLT-SDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEESGQQQLSLLDDEDAADAE 477

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
               +  +           +    D+  T  +          E  L  +   +   G  V
Sbjct: 478 AAEGEILRSRAVRDLAAALDTELADIEATGLLA-------DMELPLLEVLANLESTGIAV 530

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT- 258
           D    H L         +  +   ++    + +    ++L+  LF E  +     T+T  
Sbjct: 531 DTTHLHDLQSAFAARVAEAAEAAYAVIGKQI-NLGSPKQLQVVLFDELDMPKTKKTKTGY 589

Query: 259 --CQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
                 L S   K   P    +  +R  A+R  V  ++ L++ +  DGR+  T     A+
Sbjct: 590 TTDADALQSLFEKTQHPFLEHLLEHR-DATRLKVT-VDGLLKTVAEDGRIHTTFNQTVAA 647

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGR S      QN+P  + +                            +R   +  EG 
Sbjct: 648 -TGRLSSTEPNLQNIPVRTDAGR-------------------------QIRDGFVVGEGY 681

Query: 375 -KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L+ AD + IE R++A ++G+   ++AF TGEDL+    +R+F V   +VT + R   K
Sbjct: 682 ETLLTADYSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVK 741

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            M   L                GL+    A  +K                          
Sbjct: 742 AMSYGL--------------AYGLSAFGLAAQLKI------------------------- 762

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                      +   A+  +   V +  +E+ +   +                       
Sbjct: 763 -----STEEARQQMDAYFARFGGVRDYLHEVVEQARK----------------------- 794

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                      GR     D+ ++            R            +Q  + DI+   
Sbjct: 795 ---VGYTETLFGRRRYLPDLNSDN---RQRREVAERAALNAP------IQGTAADIIKVA 842

Query: 614 MMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
           M++  +A         ++L VHDE+V E    +      L    M +       +PL+  
Sbjct: 843 MIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVEQLVREKMAAAID--LSVPLEVS 900

Query: 667 GYESKRY 673
               + +
Sbjct: 901 VGTGRSW 907


>gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii]
          Length = 1813

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/660 (13%), Positives = 178/660 (26%), Gaps = 151/660 (22%)

Query: 11   RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVTI 68
               +D+   G+  + E   + L     +++PV ++D  +  +  +   L++ L + ++  
Sbjct: 1263 YCGLDMETTGLEVFGE--KIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1320

Query: 69   VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
            +  N  F+   L      +  I     T + ++       +             + E   
Sbjct: 1321 IIQNGKFDTKFLLYN---NFNITNIFDTYIASKLLDKNKNM------YGFKLNNIVE--- 1368

Query: 129  LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------- 179
                       +        +     +LF  Y   D +   +++K+L             
Sbjct: 1369 --KYLSVYLDKQQQNSVWNNSLLNNNQLF--YAARDSSCLLKLYKKLSEQITAENMQIVN 1424

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E +       +   G  VD+   +     +  E      +L+        +    +++
Sbjct: 1425 DIENKCILPICDMELNGIKVDLESLNKSTDQILNELNVERDKLKKELKNDDINVNSQQQI 1484

Query: 240  KTWLFLETGLHLE-DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
               L       L   L + T    L +          +  N  +  +        L   +
Sbjct: 1485 LKALQDNNVRDLSNKLIDNTSDANLKNFINHNAVI--LLRNYRKLYKLYSAFYLKLPLHI 1542

Query: 299  NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
            N       T      + +GR+S      Q +PR                           
Sbjct: 1543 NKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPR--------------------------- 1575

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                 +R   I +E    ++AD   IE ++ A +  ++  LKA+    DL+  T +    
Sbjct: 1576 --QKNIREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITK 1633

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
                ++ K+ R + K +   L Y       +  A+T                        
Sbjct: 1634 KGINEINKEDRHVAKAINFGLLYGMNYVNLRTYANTY----------------------- 1670

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                                    C     ++ + +  +S        + +QT     + 
Sbjct: 1671 ---------------YNVKMNLDQCLYFYNSFFEHYKGLSRWH----NSVKQTKALEYST 1711

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            ++ ++   P                                                K  
Sbjct: 1712 LSNRKVVFPYFSFT-------------------------------------------KAL 1728

Query: 599  ENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTS 653
               VQ    DIL   ++   K        I+L VHDEI+ E      E    +L   M +
Sbjct: 1729 NYPVQGTCADILKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALKILVESMEN 1788


>gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
 gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum]
 gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4]
          Length = 1369

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 114/800 (14%), Positives = 205/800 (25%), Gaps = 222/800 (27%)

Query: 5    FIDFETRSPIDLTKCGICKYAEDVCVILFA------FGFDDHPVELW----DCVHDPVMP 54
              D E    IDL K           +I F+        F D    +W    D +    + 
Sbjct: 657  ACDTE-VIDIDLKKFSP---IGHGKMICFSIYCGPQVKFHDGNSRVWVDVMDDIEGDEIL 712

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP------SA 108
            QV KE  E+  +  V HN  F+R +      +++       TL +AR            +
Sbjct: 713  QVFKEYFEDESILKVWHNYAFDRHIFYNH-GINVKGFG-GDTLHMARLWNASRMNSGGYS 770

Query: 109  LKAVGEALKLSSQ---KMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGEYCKGD 164
            L+A+ + L    +   K   G   I    +      +    +          + EY   D
Sbjct: 771  LEALSKELLNKPKVPIKDLFGTRKIKADGEEGKSIVIPPLERIQRDSKFILNWIEYSSLD 830

Query: 165  VTVTREI----FKRLEPLSS------------KEQELWYLDQTINDRGYCVDVALAHTLN 208
              +T  +      +L  +                +   +L   +  RG  VD+    +L 
Sbjct: 831  SELTWLLRENIHIKLRDMEWNQGTTMWDFYYLMWRPFGHLLTEMEQRGLKVDIDYLKSLE 890

Query: 209  QIVDVERTKLDQELESLTY------------------GLVSSSRCLEKLKTWLFLE---- 246
            +    +  +  +   +                      L  +    +K K  L LE    
Sbjct: 891  EKAYTDMEENRKVFLNWAKTHSPDAENMNPVSDAQIQQLFFAPVQNKKTKESLPLEKDFE 950

Query: 247  -------------------------TGLHLEDLT----ETTCQRVLSSNKKLTPQAIQV- 276
                                      G+  + LT     +     L       P   +  
Sbjct: 951  CDNLDGTIEVGKTKPKKKKTFYLRGIGMESKSLTTNGWPSVDSSSLRELAGKNPIDGKYG 1010

Query: 277  ------------------FNNRMRASR-----------------SAVLKLNTLVEAMNSD 301
                                 R +  R                      +  L +  +S+
Sbjct: 1011 SAYDFFVKSKNECYKDLPIEEREQMGREASIAINALLELGSIGTLLNTFIIPLQKLADSN 1070

Query: 302  GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
             RL  ++     + TGR S      QN P                          L+   
Sbjct: 1071 SRLHTSINVN--TETGRLSSKKPNLQNQP-------------------------ALEKDR 1103

Query: 362  DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R       G  L+VAD   +E R+LA +   +  + AF+ G D +  T         
Sbjct: 1104 YKIRKAFTCEPGNTLIVADYGQLELRLLAHITNCKSMITAFQVGGDFHSRTAMGM----- 1158

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                   +      E+ L +              G        L    ++        NF
Sbjct: 1159 ---YPHVKEAIDRGEVLLEWD-------------GEGEPPKPLLKNVYASERRKAKTLNF 1202

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                 +     + +        +     W +    V     +  +   +           
Sbjct: 1203 SIAYGKTAHGLSQDWGVTLNEAKETLNRWYEDRPEVLVWQRKTIETAHK----------- 1251

Query: 542  KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                                   GR     D+  N+           R            
Sbjct: 1252 ---------------YGWTRTLMGRYRQLPDIKGNKGMKG----HAERASINTPL----- 1287

Query: 602  VQAVSRDILAEGMM------NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP 655
             Q  + DI+ + M+         + G+ +++ +HDE++ E P+     A     +M +  
Sbjct: 1288 -QGGAADIVMKAMLIIEDNKRLKELGFKLIMQIHDELILEGPEQHADEA---RSIMMNLM 1343

Query: 656  SWAKGLPLKAEGYESKRYRK 675
            S     PL  +     RY K
Sbjct: 1344 SNPLTTPLLIDLVVDCRYAK 1363


>gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 909

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 98/646 (15%), Positives = 179/646 (27%), Gaps = 135/646 (20%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +D        +      + +     V HN+     V       +I       T + A  
Sbjct: 378 WFDTTQLDESDERAFAAWISDPSRPKVMHNAKDALRVFPEH-GWEIAGVTM-DTALAAYL 435

Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   AL A+              +EL      G+      ++ + +   +      
Sbjct: 436 VKPGRRSFALDALSIEYLH--------RELAPAAADGQLAFGTDEQAEADALMSQARAVL 487

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                +    E    +E L   E     L   +   G   D A    + Q       +  
Sbjct: 488 DLGEALGGKLEEVGAVELLHDVELPTSLLLARMERHGIAADRAHLEAMEQQFAGAVQQAV 547

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQAIQ 275
           +E  +       +    ++L+   F E  L     T+T       +      +   +   
Sbjct: 548 KEAHAAVGH-EFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHELPV 606

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +       +R     +  L++ + +DGR+  T     A+ TGR S      QN+P  +  
Sbjct: 607 IMLRHREQARLRST-VEGLIKTIAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRTDE 664

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394
                                       +R   +  EG + L+ AD + IE RV+A ++ 
Sbjct: 665 GRA-------------------------IRRGFVVGEGYESLMTADYSQIELRVMAHLSE 699

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   ++AF +GEDL+ T  ++ F+V  + V  + R   K M   L               
Sbjct: 700 DLGLIEAFTSGEDLHTTVASQVFSVERSAVDAEMRRKIKAMSYGL--------------A 745

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            GL+    +  +    A                                  +   + ++ 
Sbjct: 746 YGLSAFGLSQQLGIEPA------------------------------EARVLMDTYFERF 775

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +    +      T                                 GR     D+ 
Sbjct: 776 GGVRDYLRRVVDEARAT--------------------------GYTATMLGRRRYLPDLN 809

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTV 628
           ++            R            +Q  + DI+   M+N  +A         ++L V
Sbjct: 810 SDN---RQRRESAERMALNAP------IQGTAADIVKVAMLNVDRALTDAKLSSRLLLQV 860

Query: 629 HDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           HDEIV E    +      L    M+S  S     PL         +
Sbjct: 861 HDEIVLEVAPGEREQVETLVRHEMSSAVS--LRAPLDVSVGAGPDW 904


>gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum]
          Length = 872

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/655 (13%), Positives = 189/655 (28%), Gaps = 170/655 (25%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRW 93
           D      +    +  + + +     +    +      F++T L       F L IP    
Sbjct: 363 DGDQANFYPFSSEEEVLKRMSAW-RDEGKAVWC----FDQTRLYRKCPRFFALGIPF--V 415

Query: 94  ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
               + A           L+ +     L+               +      +  +     
Sbjct: 416 FDATIAAYLLEPGHRDYLLENLAARYFLTDTSD-----------RPRLVRNVLSKLW--- 461

Query: 151 REAWRLFGEYCKGDVTVT--REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                        D       E+ + +E           +   +   G  +D     +  
Sbjct: 462 ------------EDAVKEGLLELVQSIEIPLG------RILYQMEVLGIRIDRQALESAR 503

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
           + ++    +L++E+  L      +    +++   L+ + GL      +   +T +  L+ 
Sbjct: 504 ESIEALARELEEEIYRLAGSR-FTILSPKQVGEILYGKLGLPTARKGKTGYSTDEETLTG 562

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
              L P   ++   R    +     ++ +   +++ GRL G       + TGR S     
Sbjct: 563 LSGLHPLPEKILAYRQ-MKKLLSTYVDPISRGVDAQGRLHGQFNQ-TVTATGRLSSSNPN 620

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S +  E                         +R C IA E + L+ AD + IE
Sbjct: 621 LQNIPMRSPAGRE-------------------------IRKCFIAGENRVLLSADYSQIE 655

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA  + +   +  FE  ED++  T    F       T + R   K +          
Sbjct: 656 LRLLAHFSEDPELMAVFERNEDIHARTARLLFGDPV---TPETRRKAKTIN--------- 703

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  +++        + 
Sbjct: 704 -----FGILYGMS------------------------------AFSLSLDLGVEPPEAQA 728

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
               +     +V  L++ + +  ++T E                          +    G
Sbjct: 729 FIDRYFGAFPKVGPLFDSILEEAKKTGE--------------------------VRTILG 762

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---ATKAG- 621
           R     ++         +     R           ++Q  + D++ + M++     K   
Sbjct: 763 RKRRIPELSAPD---RRSREYGERMA------VNTVLQGSAADLIKKSMVDFGQVRKDRP 813

Query: 622 --YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              D+++ VHDE++ E  + +  +AS  +  LM         +PL  +    K +
Sbjct: 814 EVGDLLVQVHDELLFEVREDNLEDASGTIRSLMEGA--LRLKVPLIVQVGHGKNW 866


>gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
 gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809]
          Length = 798

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 94/621 (15%), Positives = 185/621 (29%), Gaps = 161/621 (25%)

Query: 70  AHNSY-----FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
            HN       ++   +                 +++  N   S          ++  K E
Sbjct: 316 GHNLKSAQFFYDIKGIYRLIGERYEEA--YDVFLMSWLNDPDSG--------GITKSKAE 365

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
                I +F          +++K        ++                        E  
Sbjct: 366 N----IEQFIGNIVVHAQEEKDKLKANGLLEVY---------------------LGMELP 400

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           + Y    + + G   D  +   +   +  E  ++ +++++     + +    ++L+ +LF
Sbjct: 401 VAYCLGKMENNGIGFDKDVMAKVADKLQDEVAEISEKIKTFVGYDI-NLNSPKQLQVFLF 459

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN---RMRASRSAVLKLNTLVEAM 298
            E G+     T+   +T +  L +   + P    V  +       ++        L + +
Sbjct: 460 EELGVEGLKKTKTGFSTDEESLRAMIPMNPLYAHVLEDILVYRELAKLLSTYALPLKDYV 519

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
            +DGR+  + +  G + TGR S      QN+P   +   +L                   
Sbjct: 520 LADGRIHSSFRQTG-TATGRLSSVNPNMQNIPMKGKWGVKL------------------- 559

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                 R   I  EG   V  D + IE R+LA + G++   +A+   ED++  T +  F 
Sbjct: 560 ------REAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRNNEDIHTKTASGIFG 613

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           VAP +V    R + K +                    GL+    +               
Sbjct: 614 VAPEKVDSGMRRLAKAVNF--------------GILYGLSPFGLS--------------- 644

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                           +        ++  + +   + +V      + +  ++T E G A 
Sbjct: 645 ---------------RDTGVSQKEAKKFIEKYFATYPKVKGF---IEKIAKETKEKGYAE 686

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                     GR    R++ +      T   +  R  T      
Sbjct: 687 TLA-----------------------GRKRFIREIRSKN---RTVAMRGERIATNVP--- 717

Query: 599 ENIVQAVSRDILAEGMMN----ATKAGYD--IVLTVHDEIVCETPDTDEFNA-SMLYHLM 651
              +Q  + DI+   M+          YD  +VL VHDE+V E  D D       +  +M
Sbjct: 718 ---MQGSAADIIKLAMVECQAVLDDKEYDALVVLQVHDELVFEVLDKDIDEFSDRVRSIM 774

Query: 652 TSNPSWAKGLPLKAEGYESKR 672
                    +PL   G   K 
Sbjct: 775 EGVME--LDVPLVVNGAAGKN 793


>gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
 gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A]
          Length = 880

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/505 (14%), Positives = 145/505 (28%), Gaps = 121/505 (23%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +  E  L  +   +  +G  VD+       + + +   KL  E+  L      +    ++
Sbjct: 483 NDVELPLSDVLADMEYQGLTVDLKELENQTKDMSLRIDKLRTEILLLAGVD-FNVDSPKQ 541

Query: 239 LKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
           L   LF   GL     T+   +T   VL++     P    +   R   ++     L  + 
Sbjct: 542 LGDVLFDTLGLPNGKKTKTGYSTGIEVLNNLIDHHPIINLIIEYRQ-LTKLYSTYLIGIK 600

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           E++  D R+         + TGR S      QN+P  +                      
Sbjct: 601 ESVFEDNRVHTIYNQA-LTLTGRLSSLEPNLQNIPIRTEEGR------------------ 641

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R   I       V AD + IE RVLA MA  +   +AFE  +D++  T  +
Sbjct: 642 -------QIRKLFIPEPDSYFVGADYSQIELRVLAAMADVKNLKQAFEEDQDIHTVTAQK 694

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F+V       +QR   K +                    G+   + +  +         
Sbjct: 695 VFHVDTVD--SEQRRRAKAVNF--------------GIIYGIGPWSLSEDI--------- 729

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                                       E     + + +  + +    + +  +      
Sbjct: 730 ---------------------GVTVKEAENFISRYLEVYPEIKDYMTNIVEFAKT----- 763

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                                +  +     R     ++ +    L    ++         
Sbjct: 764 ---------------------HGYVETLLNRRRYIPELSSKVFNLREFGKR--------- 793

Query: 596 KLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY- 648
                 +Q  + DI+   M++        K    ++L VHDE++ E    +      +  
Sbjct: 794 TSLNAPIQGTAADIIKLAMIDLHNYLKDNKKKSKLILQVHDELIVEVVKEELDEMKEVIP 853

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRY 673
           ++M     +  G+ LK        +
Sbjct: 854 NIMEKA--FNLGVRLKTSCDVGNNW 876


>gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
 gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5]
          Length = 899

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 100/674 (14%), Positives = 179/674 (26%), Gaps = 149/674 (22%)

Query: 30  VILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFER-- 77
           V+  A              H                 L+  L + ++   AH    +R  
Sbjct: 341 VVGLALA-GGGRAFYLPLRHQYLGAPAQLSAEEAAGALRPLL-SGELPKHAH----DRKG 394

Query: 78  --TVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVG-EALKLSSQKMEEGKELIA 131
               L     L +       T + +R         AL  V  E +     +   G +   
Sbjct: 395 VQHALAQ-LGLAL-GGPGADTDLASRLLLPTRREHALADVARERIGCELPRDPSGGDAAR 452

Query: 132 R------FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
           +                +               E           +++        E+ L
Sbjct: 453 KSERVPVEGLEVERVGEWAAQCAASLLDLAPALERALE-SEGLLPLYR------DVERPL 505

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   +   G  VD A    ++         L+  + +       +     +L   LF 
Sbjct: 506 VPVLCEMERAGILVDRAAMEGMSAEFGRTMQDLEARIHAAAGHP-FNIASTRELAQVLFT 564

Query: 246 ETGLHLED---LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-D 301
           E  L +        +T Q VL    +       V  +R   ++     ++ L + ++  D
Sbjct: 565 ELALPVLKRLKTGPSTDQDVLEKLAEQHELPRLVLEHR-ALAKLKGTYVDALPQLVDPRD 623

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  T    GA+ TGR S      QN+P  +                          +S
Sbjct: 624 GRIHTTFHQAGAA-TGRLSSSDPNLQNIPVRTE-------------------------LS 657

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R+  +A  G +L+ AD + IE R+LA  + +   L+AF   ED++  T A +F VA 
Sbjct: 658 RRIRAAFVAPPGWRLLSADYSQIELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVAT 717

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            +VT D R I KV+   + Y            +  L+L         +     +     +
Sbjct: 718 GEVTSDMRRIAKVLNFGIAYG-----LSAFGLSQRLDLPGAEAQGIIDRYFARYAGVRRY 772

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF-EQTIENGKAIIA 540
                E+           G A         +    ++     L  A     I       A
Sbjct: 773 VEKAVEDARATGESRTLFGRA---------RAMPEIAARNPALRNAAERTAINTPIQGTA 823

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                V ++ +                             +       R           
Sbjct: 824 ADIVKVAMIRVH----------------------------DALAGDARRARL-------- 847

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAK 659
                        ++        +VL V        P+ +      L    M        
Sbjct: 848 -------------LLQVHDE---LVLEV--------PEDELAPVEALVRREMGGAAQ--L 881

Query: 660 GLPLKAEGYESKRY 673
            +PL  E      +
Sbjct: 882 KVPLDVEVGVGHSW 895


>gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
 gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271]
          Length = 880

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 103/677 (15%), Positives = 198/677 (29%), Gaps = 135/677 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVT 67
            ET S                  +L A  +                    ++ LE+ D+ 
Sbjct: 324 LETLSEN-----------YHFEPVL-AVAWTQGDQAYATSGKVAFASSAFRKWLEDGDLP 371

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEE 125
            ++ +   + ++L     L +         + A    +     L ++   L L  Q   +
Sbjct: 372 KISADLKRD-SILLDHQGLTLA-GVTFDVGLAAYLVDVEKIKDLTSLATYLDLGIQVQLD 429

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
                  + KG       +     H        +       +T+++         ++ E 
Sbjct: 430 ----EVVYGKGVKQALPENERLAQHLADKVSLLDQAV--APLTQQLDDLGMTQLYQDMEF 483

Query: 186 WY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
               +   +  RG  VDVA    +N ++     +L+ E+++L      +    ++L   L
Sbjct: 484 PLAQVLTDMEKRGVAVDVATLDQMNDLLLARLEELEAEIQTLAGQA-FNPNSPKQLGEIL 542

Query: 244 FLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           F   GL +   T+   +T   VL   K   P    +   R   ++     L  L + + +
Sbjct: 543 FERLGLPVIKKTKTGYSTAADVLEKLKDAHPIVAALLTYRQ-LAKLQGTYLAGLPKFIQA 601

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DG++         ++TGR S      QN+P       +                      
Sbjct: 602 DGKIHTRFVQ-TLTQTGRLSSADPNLQNIPIRMEEGRK---------------------- 638

Query: 361 SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
              +R   +    G +L  AD + IE RVLA ++G+    +AF  G+D++  T  R F +
Sbjct: 639 ---IRQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIHAATARRVFGL 695

Query: 420 APAQ-VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           A  + V  D R   K +   + Y            +  L++         +    E+   
Sbjct: 696 AEDEAVNSDMRRQAKAVNFGIVYGIS-----DYGLSQNLDMPRKEAKAFIDRYLAEYPGI 750

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
             F + +     +                                               
Sbjct: 751 STFMQEIVAQAKKDGYVSTL---------------------------------------- 770

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
              +RR +P +Y                          R+ +NT  +             
Sbjct: 771 -WGRRRALPDIYSSNFNLRSF---------------AERTAMNTPIQ--GTAADIIKVAM 812

Query: 599 ENIVQAV-SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPS 656
             + QA+  RD+ A  ++               E++ E P  +      L   +M    S
Sbjct: 813 VALDQAIRQRDLQARLLLQVHD-----------ELILEAPQEEIAILEELVPEVMEGAVS 861

Query: 657 WAKGLPLKAEGYESKRY 673
               +PLK E      +
Sbjct: 862 --LSVPLKVEAASGSNW 876


>gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I
 gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica]
          Length = 921

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 89/656 (13%), Positives = 185/656 (28%), Gaps = 148/656 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-- 112
            ++   L +  +  + ++      +LK   N    I       ++  +     + K +  
Sbjct: 375 DIIFNLLADKSIKKITYSLK---PLLKFYANQSHEITAIEDLELMQYALSAGLSQKNLFE 431

Query: 113 ----------GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE--AWRLFGEY 160
                      +       K +  +   A     E          P   E     +    
Sbjct: 432 EALKEDNRPLSKLAYREEFKGDTERSTAAYKSVREDASTGSTSKLPLEVEFGKRPIVINE 491

Query: 161 CKGDVT----------VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
               V           +  +  K     S  +  + ++   +   G  VD      L+  
Sbjct: 492 SARIVANFISLYKQNILELKDNKAFRLYSDIDLPICFILDKMEKVGIKVDANYLKQLSTE 551

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-----LTETTCQRVLSS 265
              E  KL++E+ +L+     +   L++L   LF +  L          + +T   +L  
Sbjct: 552 FGAEILKLEEEIFALSGTK-FNIGSLKQLGEILFEKMQLPFGKASAKASSYSTGAEILEK 610

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             +       +     + ++      ++L + +++      T     ++ TGR S     
Sbjct: 611 LSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPN 670

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S    +                         +R   IA EG KL+ AD + IE
Sbjct: 671 LQNVPIRSSEGNK-------------------------IRQAFIAEEGYKLISADYSQIE 705

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+L+ +A      +AF   +D++  T  + FN+   ++T + R   K +          
Sbjct: 706 LRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTNEHRRKAKAIN--------- 756

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                     G++                                  A +          
Sbjct: 757 -----FGIIYGIS------------------------------AFGLAKQLNVTNGEASE 781

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
             K +  ++  V E   +                                +N  +    G
Sbjct: 782 YIKKYFAEYKGVQEYMEQTKAFA--------------------------SSNGYVTNFFG 815

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------K 619
           R      + + +       +   R            +Q  + DI+   M+N        K
Sbjct: 816 RKCFVPLIHDKK-----LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIEKRK 864

Query: 620 AGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
               +VL +HDE++ E P  +      ++  +M    S    +P+  E      + 
Sbjct: 865 LKTRLVLQIHDELLFEAPIDEVEIIIPIIKKIME--YSTNMDVPIITEIRTGNNWM 918


>gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 916

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 98/644 (15%), Positives = 173/644 (26%), Gaps = 135/644 (20%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
               D    +     + + D   V HN+     V        I       T + A     
Sbjct: 387 PSALDEADERAWAAWIADPDRPKVLHNAKGAMRVFPEH-GWSIAGVTM-DTALAAYLVKP 444

Query: 106 PS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                AL A+  E L             +A                    +    F E  
Sbjct: 445 GRRSFALDALSVEYLHRELAPAAAADGQLAFGADDTAEAEALMTQARAVLDLGDAFAE-- 502

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           K D    RE+          E     L   +   G   D      + Q       +  +E
Sbjct: 503 KLDEVGARELLH------QVELPTSALLARLERHGIAADRDHLEAMEQQFAGAVQQAVKE 556

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQAIQVF 277
             +       +    ++L+   F E  L     T+T       +      +   +   + 
Sbjct: 557 AHASVGH-EFNLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHELPVIM 615

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                 +R     +  L++ + +DGR+  T     A+ TGR S      QN+P  +    
Sbjct: 616 LRHREQARLRST-VEGLIKTIGADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRTDEGR 673

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQ 396
                                     +R   +  EG + L+ AD + IE RV+A ++ + 
Sbjct: 674 A-------------------------IRHGFVVGEGFEALMTADYSQIELRVMAHLSEDA 708

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             ++AF +GEDL+ T  ++ F V  + V  + R   K M   L                G
Sbjct: 709 GLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGL--------------AYG 754

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L+    +  +  +                                    +   + ++   
Sbjct: 755 LSAFGLSQQLNID------------------------------PGEARGLMDTYFERFGG 784

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +    +      T                                 GR     D+ ++
Sbjct: 785 VRDYLRRVVDEARAT--------------------------GYTETMLGRRRYLPDLNSD 818

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                       R            +Q  + DI+   M+N  +A         ++L VHD
Sbjct: 819 N---RQRREAAERMALNAP------IQGTAADIVKVAMLNVDRALTEAGLASRMLLQVHD 869

Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           EIV E    +      L    M++        PL       + +
Sbjct: 870 EIVLELAPGERDRVETLVRAQMSAAAD--LRAPLDVSVGVGQNW 911


>gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
 gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386]
          Length = 885

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/657 (12%), Positives = 181/657 (27%), Gaps = 138/657 (21%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           + F    +                  LK+  ++ +V   A+N           F   +  
Sbjct: 351 LGFGIS-NKEKNYYIPAAIISDKADFLKK-FKDKNVN--AYNIK-------ELFKSGLEY 399

Query: 91  HRWICTLVLARSNGLPSALKA----VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
             +   +++    G  +A         E   L  +   E K+        E       + 
Sbjct: 400 KDYFDIMLVWYVLGTEAAQDLESIIFSEFQVLLEKYEVEFKKQNMDEVSPERKAEFLTKR 459

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                    + G   + +      +++ +E           +   +  +G  +D      
Sbjct: 460 SYYMTRLKEILGH--RLEAEGLNNVYENIEKKL------VPVLADMEKKGILIDPDYFGK 511

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
               +     ++++ +  L      +    ++L   LF +  L     T+   +T   VL
Sbjct: 512 YGNELKNNLAEIEKNIYGLAG-EEFNINSPKQLSEILFEKMMLDPVKKTKTGYSTDVEVL 570

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                   +  +        ++     +  L +  +S+ R+  T    G + TGR S   
Sbjct: 571 EVLAAQGVEVAEKILEYRGYTKLLTTYVEPLPKLADSENRIHTTFHQNG-TATGRLSSSN 629

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  +    +                         +R   ++ EG   +  D + 
Sbjct: 630 PNIQNIPVKTDEGIK-------------------------IRRGFVSEEGWSFISFDYSQ 664

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE RVLA ++ ++  + A++  +DL+  T  + F     +                    
Sbjct: 665 IELRVLAELSEDETLILAYQKDKDLHDLTARKLFFKTDEEP------------------- 705

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                                    +          NF     +     + E        
Sbjct: 706 ------------------------VSREERSIAKVINFSILYGKTPFGLSKELKIPMGDA 741

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +     + +++ RV    N + Q  +                           N  +   
Sbjct: 742 KLYINKYFEEYPRVRTFLNSVLQEAK--------------------------LNGFVETL 775

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-----T 618
            G       + ++         Q  R           +VQ  + +I+   M+        
Sbjct: 776 YGTRRYITGINSSN---KNIEAQADRMA------VNTVVQGTAANIIKIVMVKLYEEFKD 826

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           K   +++L VHDE++ E  +         + ++M +     K + L A G   K + 
Sbjct: 827 KEDINMLLQVHDELIFEVKNESVDKYLKEIDNIMENTIKL-KNVRLAANGNVGKNWG 882


>gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 875

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 86/632 (13%), Positives = 185/632 (29%), Gaps = 146/632 (23%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++   L +  +  + ++      +LK   N    I       ++  +     + K + E
Sbjct: 375 DIIFNLLVDKSIKKITYSLK---PLLKFYANQSHEITAIEDLELMQYALSAGLSQKNLFE 431

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                + K    + +I    K   +     +      +  + F  Y   D          
Sbjct: 432 ----EALKETLIENIIIESAKIVINFISLYKQTILELKDNKAFRLYSDID---------- 477

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                     + ++   +   G  VD      L+     E  KL++E+ +L+     +  
Sbjct: 478 --------LPICFILDKMEKVGIKVDANYLKQLSAEFGAEILKLEEEIFALSGTK-FNIG 528

Query: 235 CLEKLKTWLFLETGLHLED-----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             ++L   LF +  L          + +T   +L    +       +     + ++    
Sbjct: 529 SPKQLGEILFEKMQLPFGKVSAKASSYSTGAEILEKLSEHGYNIANLLLRWRQLTKLKNT 588

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             ++L + +++  +   T     ++ TGR S      QN+P  S    +           
Sbjct: 589 YTDSLPKQIDNITKRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNK----------- 637

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R   IA +G KL+ AD + IE R+L+ +A      +AF   +D++
Sbjct: 638 --------------IRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T  + FN+   ++T + R   K +                    G++           
Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 718

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                  A +            K +  ++  V E   +      
Sbjct: 719 -------------------AFGLAKQLNVTNGKASEYIKKYFAEYKGVQEYMEQTKAFA- 758

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                                     +N  +    GR      + + +       +   R
Sbjct: 759 -------------------------SSNGYVTNFFGRKCFVPLIHDKK-----LKQFAER 788

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCET-PDTDEF 642
                       +Q  + DI+   M+N        K    +VL +HDE++ E   +  E 
Sbjct: 789 AAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPVEEVEI 842

Query: 643 NASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
              ++  +M +  S    +P+  E      + 
Sbjct: 843 IIPIIKKIMEN--STNIDVPIITEIRAGNNWM 872


>gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
 gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33]
          Length = 912

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 96/692 (13%), Positives = 211/692 (30%), Gaps = 145/692 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQVL-- 57
           L ID E  + ++  K  +  Y +   +    +      +D  +  +   H  ++ + +  
Sbjct: 340 LIIDSE--NGLNEQKEYLSNYKKIASIYYESLGIILSTEDKDL-YFPLNHGGLLAKNIDK 396

Query: 58  ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA--- 111
                 +   D+  +++N        K+  NL I        +++A              
Sbjct: 397 NLVVNFISELDIKFISYN-------FKSLLNLGIKFKSMYMDMMIAYHLISSQTKIDPII 449

Query: 112 -VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E   L  +  +     I            Y  +      A      Y      +   
Sbjct: 450 PITEYSTLEPKDFKTAFGKINVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDL--- 506

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                + L   E  L  +   +  +G  +DV      +  +D E  ++++ +        
Sbjct: 507 ----YKILMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAG-EE 561

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF++  L     T+   +T   VL   +       ++  +  + ++  
Sbjct: 562 FNINSPKQLGDVLFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLK 621

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              ++TL   ++ + R+  T   +G + TGR S      QN+P  +    +         
Sbjct: 622 TTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDDGIK--------- 671

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           +R   +A EGK L+  D + +E RVL  M+ ++  ++A++  +D
Sbjct: 672 ----------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+  T  R FN++ ++                                            
Sbjct: 716 LHDLTARRIFNLSDSET------------------------------------------- 732

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            +          NF     +     A E            K + +++ RV+    E+ + 
Sbjct: 733 VSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTSFEREVIEF 792

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            E+                          +  +    GR      + +      T   Q 
Sbjct: 793 GEE--------------------------HGYVKTLFGRKRYISGIDSKN---KTIKSQA 823

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEF 642
            R           ++Q  + ++L + M+        K    ++L VHDE++ E  +    
Sbjct: 824 ERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEENSVE 877

Query: 643 NASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
             S +   +M +     + + L       K +
Sbjct: 878 KYSEILADIMKNTVQL-EDVKLNININIGKNW 908


>gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 416

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/511 (15%), Positives = 167/511 (32%), Gaps = 114/511 (22%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +++ ++E   S       +   +   G  VD     T+   +    ++L+QE+ +    
Sbjct: 10  LDLYTKIERPLSI------VLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG- 62

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF +  L +   T+   +T   VL   + ++P    +   R   ++
Sbjct: 63  EEFNLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQ-LAK 121

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                +  L++ ++       T      + TGR S      QN+P       +       
Sbjct: 122 IQSTYIEGLLKVVSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRK------- 174

Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                             +R   + S  G ++  +D + IE RVLA ++ ++   +AF+ 
Sbjct: 175 ------------------IRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKE 216

Query: 405 GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           G D++ +T  R FNV  P +VT + R   K +   + Y            +  + ++   
Sbjct: 217 GMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGIS-----DYGLSQNIGISRKQ 271

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                ++  + +   +++   + E   E+   +                           
Sbjct: 272 AKQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIF------------------------ 307

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                             +RR +P +  +                        R+ +N+ 
Sbjct: 308 -----------------NRRRYLPDIKSRNFNLRSF---------------AERTAMNSP 335

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
            +          K+    +Q    ++L E           ++L VHDE++ E P  +   
Sbjct: 336 IQG---SAADIIKVAMINMQ----EMLKE-----KNLQAKMLLQVHDELIFEAPTKEIPL 383

Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              +   +M S       +PLK E    + +
Sbjct: 384 LEDMVPKVMDSAVK--LDVPLKVESKHGQTW 412


>gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11]
 gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11]
          Length = 912

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 96/692 (13%), Positives = 211/692 (30%), Gaps = 145/692 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQVL-- 57
           L ID E  + ++  K  +  Y +   +    +      +D  +  +   H  ++ + +  
Sbjct: 340 LIIDSE--NGLNEQKEYLSNYKKIASIYYESLGIILSTEDKDL-YFPLNHGGLLAKNIDK 396

Query: 58  ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA--- 111
                 +   D+  +++N        K+  NL I        +++A              
Sbjct: 397 NLVVNFISELDIKFISYN-------FKSLLNLGIKFKSMYMDMMIAYHLISSQTKIDPII 449

Query: 112 -VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E   L  +  +     I            Y  +      A      Y      +   
Sbjct: 450 PITEYSTLEPKDFKTAFGKINVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDL--- 506

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                + L   E  L  +   +  +G  +DV      +  +D E  ++++ +        
Sbjct: 507 ----YKILMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAG-EE 561

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF++  L     T+   +T   VL   +       ++  +  + ++  
Sbjct: 562 FNINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLK 621

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              ++TL   ++ + R+  T   +G + TGR S      QN+P  +    +         
Sbjct: 622 TTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDDGIK--------- 671

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           +R   +A EGK L+  D + +E RVL  M+ ++  ++A++  +D
Sbjct: 672 ----------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+  T  R FN++ ++                                            
Sbjct: 716 LHDLTARRIFNLSDSET------------------------------------------- 732

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            +          NF     +     A E            K + +++ RV+    E+ + 
Sbjct: 733 VSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTSFEREVIEF 792

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            E+                          +  +    GR      + +      T   Q 
Sbjct: 793 GEE--------------------------HGYVKTLFGRKRYISGIDSKN---KTIKSQA 823

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEF 642
            R           ++Q  + ++L + M+        K    ++L VHDE++ E  +    
Sbjct: 824 ERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEENSVE 877

Query: 643 NASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
             S +   +M +     + + L       K +
Sbjct: 878 KYSEILADIMKNTVQL-EDVKLNININIGKNW 908


>gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1]
 gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 524

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 130/495 (26%), Positives = 203/495 (41%), Gaps = 82/495 (16%)

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
                 +       V+ +     L TWL  + G+  E + +   +++L+    +   A Q
Sbjct: 77  AAFLARVFLAGASKVTKATKAADLTTWLRDQ-GVETEGVAKAAVRQMLAG--DIEGAARQ 133

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
               R  A++++  KL  +V+    DGR RG     GA  TGRW+G +   QNLPR    
Sbjct: 134 AVEIRAEAAKASTAKLTAMVKCACDDGRARGLHLVYGAG-TGRWAGRLIQLQNLPRGVIK 192

Query: 336 HEELDQII---THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
             +L   +     +         PL +IS  +R C+I +EG   + +D + IE R+ AW+
Sbjct: 193 KADLAIPLIIDGDIDLVSMLFGPPLDVISSNLRGCLIPAEGCDFIQSDFSNIEGRITAWL 252

Query: 393 AGEQWKLKAFETGEDLYVTTYARS------------FNVAPAQVTKDQRAIGKVMELALG 440
           A E+WK++AF   +                      +     + + ++   GKV ELALG
Sbjct: 253 ANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLKVLYAHPLNENSPERTPYGKVPELALG 312

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           + GG  AFQ MA+  G+                                           
Sbjct: 313 FGGGVGAFQSMAAIYGM---------------------------------------KVTD 333

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              +++K AWR+ H RV  LW  +  A    I N   +++     +  V        L +
Sbjct: 334 EEADQIKVAWREAHPRVVALWRNMEDAAFNAISNPGRVVSTAGGRIKYV---VKGGFLWM 390

Query: 561 MLPSGRSLVYRDVGNNR--------------------SYLNTTTRQLTREYTYGGKLTEN 600
           +LPSGR L Y      +                      +N+ TR+  R  TYGG L EN
Sbjct: 391 VLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDTITFMAVNSITRKWERCTTYGGSLAEN 450

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
            +QA++RD+LA  ++    AGY +V+ VHDE + E       +      +M   P+WA G
Sbjct: 451 AIQAIARDLLANALLKLEAAGYPVVIHVHDEALAEVRKG-VGSVDEFKSIMCDTPAWAAG 509

Query: 661 LPLKAEGYESKRYRK 675
           LP+ A G+   RYRK
Sbjct: 510 LPVAAAGWRGSRYRK 524


>gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
 gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
          Length = 575

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 117/713 (16%), Positives = 202/713 (28%), Gaps = 202/713 (28%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEAL 61
            LF+D ET                   + L   G     + L D           LKE L
Sbjct: 24  VLFLDTETTGD---------------RLRLVQLG-GQGEIFLLDLFELGERGVLFLKELL 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLS 119
               V  V HN  F+   L       I  +    T+V ++        +L++V       
Sbjct: 68  SQKGV--VGHNLKFDLKYLYRYH---IEPYAVFDTMVASQLLAELDRHSLQSVAMHY--- 119

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K         R     +       EY   DV V R++F  L    
Sbjct: 120 ---------LGQVLDKSLQLSDWGSRVLTKAQ------LEYAALDVVVVRDLFPILLEKL 164

Query: 180 SKEQELWYLD--------------------------QTINDRGYCVDVALAHTLNQIVDV 213
           ++      +                             +   G  VD     ++ +    
Sbjct: 165 NQCPVREEILLKTRTSRVFGLQNPVAIVEMAFVQEVAKLELNGLPVDTQELESVFREYSR 224

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270
           +  ++   +              ++L  +L    GL L    +   +T  + LS +    
Sbjct: 225 KVQRM---IMDFISTHRVDPMSPKQLGEFLTRRLGLDLPKTEKGNVSTDDKALSEHAH-H 280

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    +   R  AS+  + KL  + E +    R+    + +GA  TGR +      QN+P
Sbjct: 281 PVVRHILEIR--ASKKILDKLEEIRENLR-GNRVYPEFKQIGA-VTGRMASSNPNVQNIP 336

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           +                                +R    A EG   V+AD + IE R+ A
Sbjct: 337 KD-------------------------------LRRIFKAEEGNLFVIADFSQIELRIAA 365

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
              GE   ++AF+ G DL+  T +         +TK++R + K +   L Y   AK   +
Sbjct: 366 EYVGEIRMIRAFQEGRDLHRYTASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQ 425

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            A+T G++L                                            + +++ +
Sbjct: 426 YAATYGIDLP---------------------------------------VEEAQAIRERF 446

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                   +  N + +  ++T ++    +  +                            
Sbjct: 447 FSYFEGFRDWHNRVKEELKKTGKSSGHTLLGRSYVAHTF--------------------- 485

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG--MMN--ATKAG--YDI 624
                                          +Q    D+L     M++    K G    +
Sbjct: 486 ------------------------PDAVNYPIQGTGADLLKLAVLMLDAELRKEGIPAKV 521

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKG-LPLKAEGYESKRYRK 675
           V  VHDEIV E P         L    M    S     +P++ E    +R+ K
Sbjct: 522 VNLVHDEIVLECPQEVAQEVQTLLERAMKRAGSIILKRVPVEVEVTVKERWEK 574


>gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 627

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 89/663 (13%), Positives = 199/663 (30%), Gaps = 143/663 (21%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVL-----KEALENTDVTIVAHNSYFERTVLKACFN 85
           +      +D     +   H  ++ + +        +   ++  +++N      VL     
Sbjct: 84  LGIIISTEDKD-FYFPLNHGGLLAKNIDKNLVVNFISELNIKFISYNFK----VLLN-LG 137

Query: 86  LDIPIHRWICTLVLARSNGLPSALKA----VGEALKLSSQ--KMEEGKELIARFCKGETH 139
           ++         +++A               + E  KL  +  K   GK  I      +  
Sbjct: 138 INFKSMYMD--MMIAYHLISSQTKIDPIIPITEYSKLEPKDFKTAFGKINIELITAQDFS 195

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
           + L   +         L     K D           + L   E  L  +   +  +G  +
Sbjct: 196 KYLSATSIGILAIYDELNYLLKKED---------LYKILMENEMPLIQVLSLMERKGIEI 246

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256
           D+      +  +D E  ++++ +         +    ++L   LF++  L     T+   
Sbjct: 247 DIQYFKNYSLELDKELLRIEKAIYEEAG-EEFNINSPKQLGDILFVKLNLPSGKKTKTGY 305

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL   +       ++  +  + ++     ++TL   ++ + R+  T   +G + T
Sbjct: 306 STDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIG-TAT 364

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +    +                         +R   +A  GK L
Sbjct: 365 GRLSSSDPNLQNIPVKTDDGIK-------------------------IREGFVAGAGKVL 399

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +  D + +E RVL  M+ ++  ++A+   +DL+  T  R FN++  +             
Sbjct: 400 MSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDTET------------ 447

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                                           +          NF     +     A E 
Sbjct: 448 -------------------------------VSREQRTIAKIINFSIIYGKTPFGLAKEL 476

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                      K + +++ +V+    E+ +  E+                          
Sbjct: 477 KIPVKDASEYIKKYFEQYPKVTSFEREVIEFGEE-------------------------- 510

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
           +  +    GR      + +      T   Q  R           ++Q  + ++L + M+ 
Sbjct: 511 HGYVKTLFGRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKKVMVK 561

Query: 617 A-----TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYES 670
                  K    ++L VHDE++ E  +      S +   +M +     + + L       
Sbjct: 562 VYDVLKDKEDITLLLQVHDELIFEVEENSVEKYSEILADIMKNTVQL-EDVKLNININIG 620

Query: 671 KRY 673
           K +
Sbjct: 621 KNW 623


>gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
 gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693]
          Length = 514

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 89/622 (14%), Positives = 189/622 (30%), Gaps = 134/622 (21%)

Query: 73  SYF----ERTVLKACFNLDIPIHRWI-----CTLVLARSNGLPSALKAVGEALKLSSQKM 123
             F    +   +   F   + +           ++        + +  +    + S  + 
Sbjct: 2   IKFIAELDIKFISYNFKALLNLGFTFKSMYMDMMIAYHLISSQTKMDVLLPITEYSKVEA 61

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK--RLEPLSSK 181
           ++ K    +          + R   N              D  +   + K      L   
Sbjct: 62  KDFKTTFGKTHIETLLVDEFARYLSNIGLGIL-----ACYD-EINHLLHKEELHNILIQN 115

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +  +G  +DV+     +  ++ E  K ++ +         +    ++L  
Sbjct: 116 EMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKTEKAIYEEAG-EEFNINSPKQLGD 174

Query: 242 WLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            LF++  L     T+   +T   VL   +       ++  +  + ++     ++TL   +
Sbjct: 175 ILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPNLV 234

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +S+ R+  +   +G + TGR S      QN+P  +    +                    
Sbjct: 235 DSNSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDDGIK-------------------- 273

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                +R   +A EGK L+  D + +E RVL  M+ ++  +KA+   +DL+  T  R FN
Sbjct: 274 -----IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIKAYREEKDLHDLTARRIFN 328

Query: 419 V-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
           +     VT++QR I                                              
Sbjct: 329 LSDSDDVTREQRTIA--------------------------------------------K 344

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
             NF     +     A E            K + +++ RV+    E+ +  E+       
Sbjct: 345 IINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEE------- 397

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                              +  +    GR      + +      T   Q  R        
Sbjct: 398 -------------------HGYVKTLFGRKRYISGIDSKN---KTIKAQAERMA------ 429

Query: 598 TENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLM 651
              ++Q  + ++L + M+        K    ++L VHDE++ E  +      S +   +M
Sbjct: 430 VNTVIQGTAAEVLKKVMLKVYEVLKDKDDIALLLQVHDELIFEVEENSVEKYSEILADIM 489

Query: 652 TSNPSWAKGLPLKAEGYESKRY 673
            +     + + L       K +
Sbjct: 490 KNTVKL-EDVNLNININTGKNW 510


>gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
 gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I
 gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403]
          Length = 877

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 99/701 (14%), Positives = 191/701 (27%), Gaps = 170/701 (24%)

Query: 6   IDFE--TRSPID----------LTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVH 49
           IDFE  T   I           L   G   + E     + AF + +          D + 
Sbjct: 310 IDFEIVTDGSISEKVNADDFFYLETLGENYHREQ----IVAFAWGNAEKIYVSKNIDLLT 365

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLP 106
               P+                   ++     VL +  ++++P+ +    ++        
Sbjct: 366 KMKFPEN-----------------TYDFKKNRVLLSHLDIELPLVK-FDAMLAKYLISTT 407

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
                          K+     L          E      K    +   LF    +    
Sbjct: 408 ------------EDNKISTIARLFNSGHLATDEEIFGKGTKIALPDDAVLFEHLARKIKV 455

Query: 167 VTREIFKRLEPLSSKEQELW---------YLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           +     K +  L   EQE            +   +   G  V       +    + +   
Sbjct: 456 LALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLAS 515

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274
           L +E+  L      +    ++L   LF +  L +   T+   +T   VL     L+P   
Sbjct: 516 LTREIYDLAG-EEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVA 574

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++   R   ++     +  L+  +  DG++         ++TGR S      QN+P    
Sbjct: 575 KILEYRQ-INKVQSTYVKGLIPQIADDGKIHTRYVQD-LTQTGRLSSVDPNLQNIPVRLE 632

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
              +                         +R   + S+   L+ +D + IE RVLA ++G
Sbjct: 633 EGRK-------------------------IRKAFVPSKDSLLLSSDYSQIELRVLAHISG 667

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++  + AF+ G D++ +T  R F +     VT + R   K +   + Y            
Sbjct: 668 DEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGIS-----DFGL 722

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L +          +  E +   + +   +     +    +       +        +
Sbjct: 723 ARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRK--IPDINAR 780

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V        +    +   G A    K                               
Sbjct: 781 NFNVRGF---AERTAINSPIQGSAADILKI------------------------------ 807

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                 K         +RD               ++L VHDEI+
Sbjct: 808 ----------------AMINLDKAL------SARD-----------FKSKLLLQVHDEII 834

Query: 634 CETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
            + P  +     +L    M      A  +PLK +    K +
Sbjct: 835 LDVPLEELDEIKVLVKQTMEEAIELA--VPLKVDENTGKTW 873


>gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
 gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2]
          Length = 583

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 207/705 (29%), Gaps = 185/705 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D ET                   + L     +D PV + DC       + L  A+
Sbjct: 28  KVIAVDTETTGLDP----------HTCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAI 77

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-----ALKAVGEAL 116
            +T    V  N+ F+   L     LDI       T++ ++            LKA+ +  
Sbjct: 78  LSTSGVKVFQNAKFDLQFL---MALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 134

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            L+    +E                  ++      E       Y   D  +   + K + 
Sbjct: 135 -LNEDLDKE------------------EQTSNWQGELTESQILYAARDAEILLRLRKVMI 175

Query: 177 PLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE---- 223
           P             E         +  RG  +D      L +  + ER     EL     
Sbjct: 176 PQILENHLTQIAEIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYVE 235

Query: 224 --------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
                         ++ +   ++    +  E G+ +      T ++ L  ++   P    
Sbjct: 236 RPLMQMSLWGEDVAINQNFESQQFVLNVLHEHGIPV----AATAKQDLYPHR-RHPLVKT 290

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           + + R +A++S    L      ++   GRL        ++ +GR S      Q +PR S 
Sbjct: 291 LLSYR-KAAKSISAFLQPFTPLIHPVTGRLHPRYGQ-ISAWSGRMSCWNPNIQQIPRDSE 348

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                         R+C  A  G+KL++AD + IE RV A ++G
Sbjct: 349 -----------------------------FRACFAAPPGRKLILADYSQIELRVAAQISG 379

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + A++ GEDL++ T +   +    +++  +R   K +   L +  GA   Q+ A  
Sbjct: 380 DTRMISAYQQGEDLHLLTASLVAHKPIEEISPQERQAAKAVNFGLIFGMGAPGLQQYAQQ 439

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                                               ++ + + +
Sbjct: 440 N--------------------------------------YGVEMSLEQATEFRERFFKAY 461

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           + +      +     +                                 +GR  VY +  
Sbjct: 462 TGIHRWHQSIKAHLPK----------------------------EGRTLAGRKFVYYE-- 491

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-MNATKA---GYDIVLTVHD 630
                                      VQ  + DI+ + + +   +       IV  VHD
Sbjct: 492 ----------------KAGLPGYYNTPVQGTAADIVKKALGLLIERLAGTDTYIVGIVHD 535

Query: 631 EIVCETPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673
           EI+ E+P  +    A++L   M     +    +P K +   S+ +
Sbjct: 536 EILLESPAEEAHTMAALLKSTMEEAANAILPKVPTKVDVLVSESW 580


>gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
 gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109]
          Length = 908

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 96/673 (14%), Positives = 175/673 (26%), Gaps = 147/673 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNL 86
                 A          +D        +  L   L +       H +      L      
Sbjct: 351 GDAWGVAVADGAGQAVAYDLTAIDPADETALAAWLADPQRPKALHAAKEASHALA---GR 407

Query: 87  DIPIHRW-ICTLVLARSNGLP---SALKAVG-----EALKLSSQKMEEGKELIARFCKGE 137
            + +      T + A           L  +        L            L       +
Sbjct: 408 GLDLEGVTFDTELAAYLCQPDRRAYDLPDLAIGYLRRELGGDDGSSAGQGALDLEVDGAD 467

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
                  R          L GE      T               E  L  +   +   G 
Sbjct: 468 EGRRAAVRAAAVRDLVDVLGGEVADRGATTLLS---------DLELPLQAVLARLERTGI 518

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +D A    L +  D +      +  ++    V +    ++L+  LF +  +      +T
Sbjct: 519 AIDHAYLSGLEREFDGQVQGAAADAYAVIGREV-NLGSPKQLQEVLFDQLRMPKTKRIKT 577

Query: 258 ---TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
              T    L+    +   P    +  +R          +  L+ ++  DGR+R T Q   
Sbjct: 578 GYTTDANALTDLFARTGHPFLEHLLAHRDAIRLRQT--VEGLLRSVADDGRIRTTFQQTI 635

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
           A+ TGR S      QN+P  + +                            +R   +   
Sbjct: 636 AA-TGRLSSADPNLQNIPIRTDAGR-------------------------QIRRAFVVGP 669

Query: 373 GK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           G   L+ AD + IE R++A ++G++  + AF +GEDL+    +R F V   +VT   R+ 
Sbjct: 670 GYATLLTADYSQIEMRIMAHLSGDEGLIAAFRSGEDLHSYVGSRVFGVPTDEVTPTMRSK 729

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K M   L Y            +  L +                                
Sbjct: 730 IKAMSYGLAYG-----LSSYGLSQQLAIEVS----------------------------- 755

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                         +   + ++   V +    +      T                    
Sbjct: 756 ----------EAAALMTDYFERFGGVRDYLTGVVDQARAT-------------------- 785

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                        GR     D+ ++            R            +Q  + D++ 
Sbjct: 786 ------GYTATVLGRRRYLPDLTSDN---RQRREAAERMALNAP------IQGSAADLIK 830

Query: 612 EGMMNAT----KAG--YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSN----PSWAKG 660
             M+       + G    ++L VHDE+V E  + +      L    M +     P     
Sbjct: 831 VAMLGVDGELTRRGLRSRMLLQVHDELVLEVAEGEREEVEELVRTQMAAAGSGLPDGPLD 890

Query: 661 LPLKAEGYESKRY 673
           +PL       + +
Sbjct: 891 VPLDVSVGVGESW 903


>gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
 gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC
           25986]
          Length = 916

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 99/589 (16%), Positives = 174/589 (29%), Gaps = 119/589 (20%)

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
           R   T+V A       +     EA    +               GE       R      
Sbjct: 436 RIFDTVVAAYLLDSDRS--EFDEAYLADTYLQMALPAACGAEGAGEDAPAPAARTAALTL 493

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                  E       + RE    +         L  +   +   G  VD    H+L++ +
Sbjct: 494 ALVAPLRE------CMARENAANVFDGIEM--PLVPVLAKMERAGMLVDPDRLHSLSEGL 545

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE--DLTE----TTCQRVLSS 265
             + T++++ +  L      +     +L   LF   GL  +    T+    +T  +VLS 
Sbjct: 546 ATQITEVERSIRDLAGDETFNIGSPMQLSHVLFDVMGLPTKGLKKTKRGYYSTNAKVLSD 605

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             +       +  +    S+     L+TL      DGR+  T      + TGR S     
Sbjct: 606 LARDHEIVRLIL-DWREKSKIKSTYLDTLGPLRRGDGRVHTTYNQ-TITATGRLSSSDPN 663

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S                              V++   A EG   +  D + IE
Sbjct: 664 LQNIPTRSELGRT-------------------------VKTAFSAGEGSVFLAVDYSQIE 698

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA ++G++  ++AF  GED +  T AR F V  ++VT D R+  K +   + Y    
Sbjct: 699 LRLLAHLSGDEHLVRAFNEGEDFHAETAARVFGVPVSEVTPDLRSRAKAVNFGIVYGQ-- 756

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
              Q    +  L+++        +   E +     F   +     +    +   G    R
Sbjct: 757 ---QAYGLSQSLHISMAEARDMIDRYYEAYPGVRTFLDNVVARAKQTGYAETMYGR--RR 811

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                + K+ ++        +        G A    K                       
Sbjct: 812 HIPELKAKNPQLRGFG---ERTAMNHPMQGTAADIIKI---------------------- 846

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                         +   +R+L  E               +                 ++
Sbjct: 847 -------------AMARVSRRLEEE-------------GFAA---------------HMI 865

Query: 626 LTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDE+  E P  +     +M+  +M         +PL AE      +
Sbjct: 866 LQVHDELDFECPVDEVERLTAMVRDVMEHVVD--LRVPLIAEASTGITW 912


>gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 911

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/688 (13%), Positives = 213/688 (30%), Gaps = 137/688 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQVL-- 57
           L ID E  + ++  K  +  Y +   +    +      +D     +   H  ++ + +  
Sbjct: 339 LIIDNE--NSLNEQKEYLTNYKKIASIYYEGLGIILSTEDKD-FYFPLNHGGLLAKNIDR 395

Query: 58  ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
               + +   D+  +++N       L     +      ++  ++        + +  +  
Sbjct: 396 NLVVKFISELDIKFISYNFK----ALLN-LGISFK-SMYMDMMIAYHLISSQTKIDPIIP 449

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             + S  + ++ K    +          + +       +  +   Y + +     +    
Sbjct: 450 ITEYSKLEPKDFKTAFGKVNVELITAQDFSKYLS--DISIGILAIYDELNYL--LKKEDL 505

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            + L   E  L  +   +  +G  +DV      +  ++ E  K+++ +         +  
Sbjct: 506 YKILMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELEKELLKVEKAIYEEAG-EEFNIN 564

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF++  L     T+   +T   VL   +       ++  +  + ++     +
Sbjct: 565 SPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYV 624

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           +TL   ++ + R+  +   +G + TGR S      QN+P  +    +             
Sbjct: 625 DTLPLLVDENSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDDGIK------------- 670

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   IA EGK L+  D + +E RVL  M+ ++  ++A+   +DL+  
Sbjct: 671 ------------IREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDL 718

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T  R FN+  ++                                             +  
Sbjct: 719 TARRIFNLPDSET-------------------------------------------VSRE 735

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                   NF     +     A E            K + +++ RV+    E+ +  E+ 
Sbjct: 736 QRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEE- 794

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                    +  +    GR      + +      T   Q  R  
Sbjct: 795 -------------------------HGYVKTLFGRKRYISGIDSKN---KTIKSQAERMA 826

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNAS- 645
                    ++Q  + ++L + M+        K    ++L VHDE++ E         S 
Sbjct: 827 ------VNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQVHDELIFEVEKNSVEKYSG 880

Query: 646 MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +L  +M +     + + L       K +
Sbjct: 881 ILADIMKNTVQL-EDVKLNININIGKNW 907


>gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56]
          Length = 877

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 99/701 (14%), Positives = 190/701 (27%), Gaps = 170/701 (24%)

Query: 6   IDFE--TRSPID----------LTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVH 49
           IDFE  T   I           L   G   + E     + AF + +          D + 
Sbjct: 310 IDFEIVTDGSISEKVNADDFFYLETLGENYHREQ----IVAFAWGNAEKIYVSKNIDLLT 365

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLP 106
               P+                   ++     VL +  ++++P+ +    ++        
Sbjct: 366 KMKFPEN-----------------TYDFKKNRVLLSHLDIELPLVK-FDAMLAKYLISTT 407

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
                          K+     L          E      K    +   LF    +    
Sbjct: 408 ------------EDNKISTIARLFNSGHLATDEEIFGKGTKIALPDDAVLFEHLARKIKV 455

Query: 167 VTREIFKRLEPLSSKEQELW---------YLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           +     K +  L   EQE            +   +   G  V       +    + +   
Sbjct: 456 LALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLAS 515

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274
           L +E+  L      +    ++L   LF +  L +   T+   +T   VL     L+P   
Sbjct: 516 LTREIYDLAG-EEFNINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVA 574

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           ++   R   ++     +  L+  +  DG++         ++TGR S      QN+P    
Sbjct: 575 KILEYRQ-INKVQSTYVKGLIPQIADDGKIHTRYVQD-LTQTGRLSSVDPNLQNIPVRLE 632

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
              +                         +R   + S+   L+ +D + IE RVLA ++G
Sbjct: 633 EGRK-------------------------IRKAFVPSKDSLLLSSDYSQIELRVLAHISG 667

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           ++  + AF+ G D++ +T  R F +     VT + R   K +   + Y            
Sbjct: 668 DEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGIS-----DFGL 722

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              L +          +  E +   + +   +     +    +       +        +
Sbjct: 723 ARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHRRRK--IPDINAR 780

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  V        +    +   G A    K                               
Sbjct: 781 NFNVRGF---AERTAINSPIQGSAADILKI------------------------------ 807

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                                 K         +RD               ++L VHDEI+
Sbjct: 808 ----------------AMINLDKAL------SARD-----------FKSKLLLQVHDEII 834

Query: 634 CETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
            + P  +      L    M      A  +PLK +    K +
Sbjct: 835 LDVPLEELDEIKALVKQTMEEAIELA--VPLKVDENTGKTW 873


>gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
 gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
          Length = 576

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 113/698 (16%), Positives = 208/698 (29%), Gaps = 172/698 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEAL 61
            LF+D ET S                 + L   G ++  V + D           LK+ L
Sbjct: 24  YLFLDTETVSE---------------KIRLVQLG-NNEDVFIVDLFETGSYGVDFLKDLL 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL-----KAVGE 114
            +  +  V HN  ++   L       I  +    T++ ++  G     +L       +GE
Sbjct: 68  VDKGI--VGHNLKYDLKFLYRY---GIEPYAVFDTMIASQLLGELDRHSLQKVAMHYLGE 122

Query: 115 ALKLSSQKMEEGKE-LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR--EI 171
            L  S Q    G+  L     +    +    R+  +          + +  +  TR   +
Sbjct: 123 VLDKSLQMSNWGRAVLSKEQLEYAALDVKMVRDLYSILLDKLNSTAHQEETLLKTRTSRV 182

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           F    P++  E         +   G  VD+     L +       K   E          
Sbjct: 183 FGLKNPVAIIEMAFVQEVAKLELNGIGVDIKELEDLIREYKKNLNKKVMEFMMHYRID-- 240

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
                ++L   L    GL L    +   +T  ++LS           +   R   ++  +
Sbjct: 241 -PLSPKQLGELLSKRLGLDLPKTEKGNISTDDKILSQFIH-HKPVQMILEIR--MTKKLL 296

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
            KL+ +   +  DG +    + +GA  TGR S      QN+PR                 
Sbjct: 297 DKLDEIRSFV-KDGSVYPEFKQIGA-ITGRMSSLNPNVQNIPRD---------------- 338

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                          +R    A EGK LV++D + IE R+ +   G++  +KAF  G+DL
Sbjct: 339 ---------------LRGVFKAREGKVLVISDFSQIELRIASEYVGDERMIKAFREGKDL 383

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T +         ++K++R + K +   L Y   A+     A + G++          
Sbjct: 384 HRYTASVLLGKKEEDISKEERQLAKAVNFGLIYGISARGLSDYAKSYGID---------- 433

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                              ++++  + +      E    + +  
Sbjct: 434 -----------------------------LSVDDAQKIRDRFFEYFRSFKEWHERVKREL 464

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
           +Q   +    +  +                                              
Sbjct: 465 KQLGGSRGYTLLGRSYVAHTF--------------------------------------- 485

Query: 589 REYTYGGKLTENIVQAVSRDILAEG--M----MNATKAGYDIVLTVHDEIVCETPDTDEF 642
                        +Q    D+L     M    +   K    +V  VHDEIV E       
Sbjct: 486 ------PDAVNYPIQGTGADLLKLSVLMFDAEIKREKIEAHVVNLVHDEIVVEC---QME 536

Query: 643 NASMLYHLMTSNPSWA-----KGLPLKAEGYESKRYRK 675
            A ++  L+      A     K +P++ E   ++R+ K
Sbjct: 537 KAQLVRDLLERAMKHAGRVVLKQVPVEVESTINERWLK 574


>gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1]
 gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1]
          Length = 912

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 96/692 (13%), Positives = 210/692 (30%), Gaps = 145/692 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGFDDHPVELWDCVHDPVMPQVL-- 57
           L ID E    ++  K  +  Y +   +    +      +D     +   H  ++ + +  
Sbjct: 340 LIIDSE--DALNEQKEYLSNYKKIASIYYESLGIILSTED-KNLYFPLNHGGLLAKNIDK 396

Query: 58  ---KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA--- 111
                 +   D+  +++N        K+  NL I        +++A              
Sbjct: 397 NLVVNFISELDIKFISYN-------FKSLLNLGIKFKSMYMDMMIAYHLISSQTKIDPII 449

Query: 112 -VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + E   L  +  +     I            Y  +      A      Y      +   
Sbjct: 450 PITEYSTLEPKDFKTAFGKINVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDL--- 506

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                + L   E  L  +   +  +G  +DV      +  +D E  ++++ +        
Sbjct: 507 ----YKILMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAG-EE 561

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF++  L     T+   +T   VL   +       ++  +  + ++  
Sbjct: 562 FNINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLK 621

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              ++TL   ++ + R+  T   +G + TGR S      QN+P  +    +         
Sbjct: 622 TTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDDGIK--------- 671

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           +R   +A EGK L+  D + +E RVL  M+ ++  ++A++  +D
Sbjct: 672 ----------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+  T  R FN++ ++                                            
Sbjct: 716 LHDLTARRIFNLSDSET------------------------------------------- 732

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            +          NF     +     A E            K + +++ RV+    E+ + 
Sbjct: 733 VSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTSFEREVIEF 792

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            E+                          +  +    GR      + +      T   Q 
Sbjct: 793 GEE--------------------------HGYVKTLFGRKRYISGIDSKN---KTIKSQA 823

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEF 642
            R           ++Q  + ++L + M+        K    ++L VHDE++ E  ++   
Sbjct: 824 ERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEESSVE 877

Query: 643 NASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
             S +   +M +     + + L       K +
Sbjct: 878 KYSRILADIMKNTVQL-EDVKLNININIGKNW 908


>gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008]
 gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008]
          Length = 873

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/590 (15%), Positives = 163/590 (27%), Gaps = 125/590 (21%)

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              R     ++A                            L  RF          D    
Sbjct: 400 KTARVHDMSLIAYLLDPTRTN------YGYL--------YLTERFSVPSIASGSVDVECV 445

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
           +  +A     E          E++   E   + E  L +    +   G  +D        
Sbjct: 446 SMVKALLAMNEAACESARRE-ELWSLYE---TIELPLIHTLVVMEKNGIYIDTEKLAETT 501

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
                E  ++ QE+  L      +    ++L   LF +  L +   T+   +T   VL  
Sbjct: 502 TRFKEELAQVQQEIYELAG-ENFNINSPKQLGVILFEKMNLPIIKKTKTGYSTDAEVLDM 560

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +  +P   ++   R   ++        L   +N   R   T      + TGR S     
Sbjct: 561 LRHESPIVEKILAYR-SVAKLVSTYCEGLAVLINDKTRRIHTTFNQMVTATGRLSSSDPN 619

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384
            QN+P  +    E                         +R+      G   LV AD + I
Sbjct: 620 LQNIPVRTEKGRE-------------------------IRALFYPGAGYDTLVSADYSQI 654

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++G++  +KAF  G+D++  T A     A   VT ++R+  K +   + Y   
Sbjct: 655 ELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKAQDDVTSEERSHAKAINFGIIYGIS 714

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                    +  L +         +     +   + +   M +   E        G   E
Sbjct: 715 -----DFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQRE 769

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                 R  + R     +   +    T   G A    K                      
Sbjct: 770 LPDINSRNFNRR-----SFAERTAMNTPIQGTAADIIKL--------------------- 803

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                          +N   ++L  +                                 +
Sbjct: 804 --------------AMNQMEQKLEEQNF----------------------------KSRL 821

Query: 625 VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +L VHDE+V E  +++      L    M S       +PL  + + ++ +
Sbjct: 822 LLQVHDELVLEVVNSELEAIEELLRNTMQSVVE--LQVPLIVDVHHAENW 869


>gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
 gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926]
          Length = 903

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/662 (14%), Positives = 202/662 (30%), Gaps = 146/662 (22%)

Query: 32  LFAFGFDDHPVELWDCVHD----PVMPQVLKEALENTDVTIVAHNSYF-ERTVLKACFNL 86
             +              HD          L +   + D+  +++   F +          
Sbjct: 364 GISVTLKSGN-YYMPLSHDYIGSENNSIELLKKFLSADIEFISY--KFKDIL----NEGY 416

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALK------LSSQKMEEGKELIARFCKGETHE 140
           +I        ++ A         +++   L           K   GKE  ++    E  E
Sbjct: 417 EIKNIH-FDVMI-AYFLLTAQTKESIEVVLHNETGDDFPLYKDIFGKEDPSKLPVEEYGE 474

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
            +  R++  +     L       D     ++F  +E           +   +   G  +D
Sbjct: 475 FMMKRSESLYDIYKDLKNRIELED---MHDLFYNVEMKL------ILILSKMEQEGIAID 525

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                  +  +  +  +L + +  ++     +    ++L   LF++  +     T+   +
Sbjct: 526 PEYFREFSLELSDKLQELKKNIFKISE-EEFNLNSPKQLAEILFMKLNIEPVSKTKTGFS 584

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL + +    +  +   +  + ++     ++ L +  +   RL  T    GA+ TG
Sbjct: 585 TNVDVLETLRDRGEKIAEYILDYRKLTKLQSTYVDALPKLADERNRLHTTFNQTGAA-TG 643

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P  S    +                         +R   I+ +G  L+
Sbjct: 644 RLSSSNPNLQNIPVKSDEGIK-------------------------IRRGFISDKGNTLL 678

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
             D + IE RVLA ++ ++  +KA+  G DL+  T  + F++                  
Sbjct: 679 AIDYSQIELRVLAELSKDETLIKAYSDGLDLHDLTAKKIFDIDTD--------------- 723

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                                            +        NF     +     + E  
Sbjct: 724 ------------------------------VTRSQRTMAKIVNFSIIYGKTPFGLSKELG 753

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 +   K + +++ RV EL  ++ +  E+T                          
Sbjct: 754 ISQKDAKEYIKRYFEQYPRVKELEEKIIKNAEET-------------------------- 787

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
             +    GR      + +         +Q  R           ++Q  + DIL + M+  
Sbjct: 788 GYVKTYFGRKRSVDGISSKN---GNIKKQADRMA------VNTVIQGTAADILKKVMIEI 838

Query: 618 TKAGYD-----IVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESK 671
            K   D     + L VHDE++ E  D      A ++ ++M ++  + K + L+A   + K
Sbjct: 839 DKKIKDKNDIKMNLQVHDELIFEVKDESVEKYADLIKNIMENSIKF-KNVKLEANVAQGK 897

Query: 672 RY 673
            +
Sbjct: 898 NW 899


>gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
 gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05]
          Length = 1025

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 92/663 (13%), Positives = 189/663 (28%), Gaps = 144/663 (21%)

Query: 48   VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP---IHRWICTLVLARSNG 104
              D  + ++L++ L+      V H+      +LK+    D         + T + +    
Sbjct: 467  SSDQALLEMLRKFLQKNSSITVLHDYKKHLGLLKSLKLFDSNNSFGTPLLDTRLASYLLE 526

Query: 105  LPS---ALKAVGEAL----------KLSSQKMEEGKELIARF--CKGETHECLYDRNKPN 149
                   L+ + E              +  K  E   LI        E       + +  
Sbjct: 527  PDFRAETLENMAEHYLDIQSVEDNLGENEAKQGELDLLIDNEVSSSEEETNEKQTQAREA 586

Query: 150  HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
                  L           T +  K+   ++  E  +  + + + D G  VD+     + +
Sbjct: 587  KFLKTALLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSGMLK 646

Query: 210  IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLS- 264
                +          +    V + +  ++L+  LF   GL     T+    TT    L  
Sbjct: 647  QFSADAEFAQNMAWKVAGSSV-NLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQA 705

Query: 265  ---SNKKLTPQAIQV--FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
                     P +  +         ++   + + +L++A + D R   T      + TGR 
Sbjct: 706  MYVKLDPEEPASQFLGALLKHRETNKLKQI-VQSLIDAAHYDDRRIHTTFEQTIAATGRL 764

Query: 320  SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378
            S      QN+P  + +  E                         +R+  I  E  + L+ 
Sbjct: 765  SSADPNLQNIPNRNAAGRE-------------------------IRAAFIPGEEFEYLMS 799

Query: 379  ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
             D + +E R++A  + ++  ++AF +G D +    +  + +   QVT DQR+  K M   
Sbjct: 800  CDYSQVELRIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVTPDQRSHVKAMSYG 859

Query: 439  LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
            L Y               L+++                                      
Sbjct: 860  LAYG-----LSTYGLAKQLSISPA------------------------------------ 878

Query: 499  IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                 E +K  +      V +    L    ++                            
Sbjct: 879  ---EAEMLKNKYFDTFGNVHDYLESLVSKAKE--------------------------LG 909

Query: 559  ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  GR   +  + +N      +     R            +Q  + DI+   M+   
Sbjct: 910  YTETMFGRRRYFPQLSSNN---RASREAAERGALNAP------IQGTAADIMKLAMLRVD 960

Query: 619  ------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESK 671
                  K    ++L +HDE++ E    ++     +    M +       +PL        
Sbjct: 961  LGLREAKVRSRVILQIHDELILEISHGEQAQVENIVRKAMENAVH--LDVPLSVSTGVGV 1018

Query: 672  RYR 674
             ++
Sbjct: 1019 DWQ 1021


>gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 911

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/657 (12%), Positives = 201/657 (30%), Gaps = 131/657 (19%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVL-----KEALENTDVTIVAHNSYFERTVLKACFN 85
           +      +D     +   H  ++ + +      + +   D+  +++N       L     
Sbjct: 368 LGIILSTEDKD-FYFPLNHGGLLAKNIDRNLVVKFISELDIKFISYNFK----ALLN-LG 421

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +      ++  ++        + +  +    + S  + ++ K    +          + +
Sbjct: 422 ISFK-SMYMDMMIAYHLISSQTKIDPIIPITEYSKLEPKDFKTAFGKVNVELITAQDFSK 480

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
                  +  +   Y + +     +     + L   E  L  +   +  +G  +DV    
Sbjct: 481 YLS--DISIGILAIYDELNYL--LKKEDLYKILMENEMPLIPVLSLMERKGIEIDVQYFK 536

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
             +  ++ E  K+++ +         +    ++L   LF++  L     T+   +T   V
Sbjct: 537 NYSLELEKELLKVEKAIYEEAG-EEFNINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMV 595

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L   +       ++  +  + ++     ++TL   ++ + R+  +   +G + TGR S  
Sbjct: 596 LEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTSFNQIG-TATGRLSSS 654

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P  +    +                         +R   IA EGK L+  D +
Sbjct: 655 EPNLQNIPVKTDDGIK-------------------------IREGFIAGEGKVLMSIDYS 689

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            +E RVL  M+ ++  ++A+   +DL+  T  R FN+  ++                   
Sbjct: 690 QVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLPDSET------------------ 731

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                                     +          NF     +     A E       
Sbjct: 732 -------------------------VSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKD 766

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                K + +++ RV+    E+ +  E+                          +  +  
Sbjct: 767 ASEYIKKYFEQYPRVTTFEKEVIEFGEE--------------------------HGYVKT 800

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617
             GR      + +      T   Q  R           ++Q  + ++L + M+       
Sbjct: 801 LFGRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKKVMVKVYDILK 851

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            K    ++L VHDE++ E         S +L  +M +     + + L       K +
Sbjct: 852 DKEDIALLLQVHDELIFEVEKNSVEKYSGILADIMKNTVQL-EDVKLNININIGKNW 907


>gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD]
 gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD]
          Length = 1025

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 92/661 (13%), Positives = 190/661 (28%), Gaps = 144/661 (21%)

Query: 50   DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP---IHRWICTLVLARSNGLP 106
            D  + ++L++ L+      V H+      +LK+    D         + T + +      
Sbjct: 469  DRALLEMLRKFLQKNSSITVLHDYKKHLGLLKSLKLFDSNNSFGTPLLDTRLASYLLEPD 528

Query: 107  S---ALKAVGEAL----------KLSSQKMEEGKELIARF--CKGETHECLYDRNKPNHR 151
                 L+ + E              +  K  E   LI        E +     + +    
Sbjct: 529  FRAETLENMAEHYLDIQSDEDNLGENEAKQGELDLLIDDETPASEEENNEKQTQAREAKF 588

Query: 152  EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                L           T +  K+   ++  E  +  + + + D G  VD+     + +  
Sbjct: 589  LRTALLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSGMLKQF 648

Query: 212  DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLS--- 264
              +          +    V + +  ++L+  LF   GL     T+    TT    L    
Sbjct: 649  SADAEFAQNMAWKVAGSSV-NLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMY 707

Query: 265  -SNKKLTPQAIQV--FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
                   P +  +         ++   + + +L++A + D R   T      + TGR S 
Sbjct: 708  VKLDPEEPASQFLGALLKHRETNKLKQI-VQSLIDAAHYDDRRIHTTFEQTIAATGRLSS 766

Query: 322  CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVAD 380
                 QN+P  + +  E                         +R+  I  E  + L+  D
Sbjct: 767  ADPNLQNIPNRNAAGRE-------------------------IRAAFIPGEEFEYLMSCD 801

Query: 381  LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
             + +E R++A  + ++  ++AF +G D +    +  + +   QVT DQR+  K M   L 
Sbjct: 802  YSQVELRIMAHASHDKTLIEAFRSGADFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLA 861

Query: 441  YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
            Y               L+++                                        
Sbjct: 862  YG-----LSTYGLAKQLSISPA-------------------------------------- 878

Query: 501  TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
               E +K  +      V +    L    ++                              
Sbjct: 879  -EAEMLKNKYFDTFGNVHDYLESLVSKAKE--------------------------LGYT 911

Query: 561  MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618
                GR   +  + +N      +     R            +Q  + DI+   M+     
Sbjct: 912  ETMFGRRRYFPQLSSNN---RASREAAERGALNAP------IQGTAADIMKLAMLRVDLG 962

Query: 619  ----KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                K    ++L +HDE++ E    ++     +    M +       +PL         +
Sbjct: 963  LREAKVRSRVILQIHDELILEISHGEQEQVENIVRKAMENAVH--LDVPLNVSTGVGVDW 1020

Query: 674  R 674
            +
Sbjct: 1021 Q 1021


>gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4]
 gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4]
          Length = 885

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 200/659 (30%), Gaps = 130/659 (19%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERT---VLKACF 84
               FA G D     LW      ++ +  L E L N  V +   N  F+     V     
Sbjct: 339 EFCGFAIGTDKE---LWVSDDVELLREPALSEILANQKVVV---NV-FDGKRTYVGLHRL 391

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            + +    +   L+ +           +G+ L       +   +        +      D
Sbjct: 392 GVTLNSINY-DILLQSYLLDTNDNSNDLGQ-LAHEHDIEDIKTDAEVYGTGAKRAVPAKD 449

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVA 202
               +      + GE  +    +  E+    +     + EL    +   +   G  VD  
Sbjct: 450 VLLEHLAHKIDVIGELGRR---LQEELINNQQADLYWKIELPLSIVLAKMEISGIKVDRE 506

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +    ++L+ ++         +    ++L   LF +    +   T+   +T 
Sbjct: 507 RLGAMQSELTERLSELESQIHQEAG-EEFNINSPKQLGHILFEKLEFPVIKKTKTGYSTA 565

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +  +P    + + R   ++     ++ L++ ++S  +   T      ++TGR 
Sbjct: 566 VNVLEKLRGYSPIIDHILDYR-TIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQTGRL 624

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378
           S      QN+P      ++                         +R   + S EG  ++ 
Sbjct: 625 SSTDPNLQNIPIRIEEGKK-------------------------IRQAFVPSHEGWHILS 659

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAIGKVMEL 437
           +D + IE RVLA + G+    +AF+  ED++ +T  R F     ++VT + R   K +  
Sbjct: 660 SDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNF 719

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y            +  + ++        ++  +E+   + +     E   E    + 
Sbjct: 720 GIVYGIS-----DYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYVET 774

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                                                     A +RR +P ++       
Sbjct: 775 I-----------------------------------------AHRRRYLPDIHASNFSVR 793

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                              R+ +NT  +          K+    +Q              
Sbjct: 794 SF---------------AERTAMNTPIQG---SAADIIKIAMINMQ-----------NEL 824

Query: 618 TKA--GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            K      ++L VHDE++ E PD +      L   +M S       +PLK E      +
Sbjct: 825 EKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVMDSAIK--LDVPLKVETSWGNNW 881


>gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51]
 gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 578

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 108/705 (15%), Positives = 207/705 (29%), Gaps = 185/705 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D ET                   + L     +D PV + DC       + L  A+
Sbjct: 23  KVIAVDTETTGLDP----------HTCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAI 72

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-----ALKAVGEAL 116
            +T    +  N+ F+   L     LDI       T++ ++            LKA+ +  
Sbjct: 73  LSTSGIKIFQNAKFDLQFL---MALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 129

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            L+    +E                  ++      E       Y   D  +   + K + 
Sbjct: 130 -LNEDLDKE------------------EQTSNWQGELTESQILYAARDAEILLRLRKVMI 170

Query: 177 PLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE---- 223
           P   +                   +  RG  +D      L +  + ER     EL     
Sbjct: 171 PQILENHLTQIAGIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYVE 230

Query: 224 --------SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
                         ++ +   ++    +  E G+ +      T ++ L   +   P    
Sbjct: 231 RPLMQMSLWGEDVAINQNFESQQFVLNVLHEHGIPV----AATAKQDLYPYR-RHPLVKT 285

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
           + + R +A++S    L      ++   GRL        ++ +GR S      Q +PR S 
Sbjct: 286 LLSYR-KAAKSISAFLQPFTPLIHPVTGRLHPRYGQ-ISAWSGRMSCWNPNIQQIPRDSE 343

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                         R+C  A  G+KL++AD + IE RV A ++G
Sbjct: 344 -----------------------------FRACFAAPPGRKLILADYSQIELRVAAQISG 374

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + A++ GEDL++ T +   +   A++T  +R   K +   L +  GA   Q+ A  
Sbjct: 375 DTRMISAYQQGEDLHLLTASLVAHKPIAEITPQERQAAKAVNFGLIFGMGAPGLQQYAQQ 434

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                                               ++ + + +
Sbjct: 435 N--------------------------------------YGVEMSLEQATEFRERFFKAY 456

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           + +      +     +                                 +GR  VY +  
Sbjct: 457 TGIHRWHQSIKAHLPK----------------------------EGRTLAGRKFVYYE-- 486

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-MNATKA---GYDIVLTVHD 630
                                      VQ  + DI+ + + +   +       IV  VHD
Sbjct: 487 ----------------KAGLPGYYNTPVQGTAADIVKKALGLLIERLAGTDTYIVGIVHD 530

Query: 631 EIVCETPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673
           EI+ E+P  +    A++L   M     +    +P K +   S+ +
Sbjct: 531 EILLESPAEEAHTMAALLKSTMEEAANAILPKVPTKVDVLVSESW 575


>gi|327198385|ref|YP_004306959.1| DNA polymerase I [Streptococcus phage Dp-1]
 gi|314912687|gb|ADT64078.1| DNA polymerase I [Streptococcus phage Dp-1]
          Length = 779

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/752 (12%), Positives = 207/752 (27%), Gaps = 149/752 (19%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----------P 54
            ID ET     +             +                  H   M          P
Sbjct: 87  SIDVETDGLDTI----------HDELAGVCLYSPSQKGIYAPVNHVSNMTKMRIKNQISP 136

Query: 55  QVLKEALE---NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSAL 109
           + +K+ L+   ++ + ++ HNS F+   +     + +    W  T + A         +L
Sbjct: 137 EFMKKMLQRIVDSGIPVIYHNSKFDMKSIYWRLGVKMNEPAW-DTYLAAMLLNENESHSL 195

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           K++              K +               +  P       +   Y   D   T 
Sbjct: 196 KSL------------HSKYVRNEENAEVAKFNDLFKGIPFSLIPPDVAYMYAAYDPLQTF 243

Query: 170 EIFKRLEPLSSKEQELWY--------------------LDQTINDRGYCVDVALAHTLNQ 209
           E+++  E   +   E                       +   +   G  +D      + +
Sbjct: 244 ELYEFQEQYLTPGTEQCEEYNLEKVSWVLHNIEMPLIKVLFDMEVYGVDLDQDKLAEIRE 303

Query: 210 IVDVERTKLDQELESL--------------------------TYGLVSSSRCLEKLKTWL 243
                  + +QE + L                             +  S     +L    
Sbjct: 304 QFTANMNEAEQEFQQLVSEWQPEIEELRQTNFQSYQKLEMDARGRVTVSISSPTQLAILF 363

Query: 244 FLETGLHLEDLTET--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
           +   GL   +  +   T + ++           +      + ++               D
Sbjct: 364 YDIMGLKSPERDKPRGTGESIVEHFDND---ISKALLKYRKYAKLVSTYTTLDQHLAKPD 420

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            R+  T +  GA +TGR S      QN+P                               
Sbjct: 421 NRIHTTFKQYGA-KTGRMSSENPNLQNIPSRGE--------------------------G 453

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             VR    ASEG  ++ +D +  E R LA ++G++    A+E   DLY    ++ + V  
Sbjct: 454 AVVRQIFAASEGHYIIGSDYSQQEPRSLAELSGDESMRHAYEQNLDLYSVIGSKLYGVPY 513

Query: 422 AQV------------TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            +              K +R   K + L L Y  GA +  +      +N++         
Sbjct: 514 EECLEFYPDGTTNKEGKLRRNSVKSVLLGLMYGRGANSIAEQ-----MNVSVKEANKVIE 568

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
               E+    ++  ++Q+   +        G        +  +      +          
Sbjct: 569 DFFTEFPKVADYIIFVQQQAQDLGYVQTATGRRRRLPDMSLPEYEFEYIDASKNEDFDPF 628

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL-T 588
               + +         +   + + D+                ++ +         +    
Sbjct: 629 NFDADQQMDDTVPEHIIEKYWAQLDRAWGFKKKQ--------EIKDQAKAEGILIKDNGG 680

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP-DTDE 641
           +      +   +++Q  + D+    M+         + G+ +++ VHDE++ E P    +
Sbjct: 681 KIADAQRQCLNSVIQGTAADMTKYAMIKVHNDAELKELGFHLMIPVHDELLGEVPIKNAK 740

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             A  L  +M         LP+K +    +R+
Sbjct: 741 RGAERLTEVMIEAAKDIISLPMKCDPSIVERW 772


>gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
 gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284]
          Length = 885

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 200/659 (30%), Gaps = 130/659 (19%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERT---VLKACF 84
               FA G D     LW      ++ +  L E L N  V +   N  F+     V     
Sbjct: 339 EFCGFAIGTDKE---LWVSDDVELLREPALSEILANQKVVV---NV-FDGKRTYVGLHRL 391

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            + +    +   L+ +           +G+ L       +   +        +      D
Sbjct: 392 GVTLNSINY-DILLQSYLLDTNDNSNDLGQ-LAHEHDIEDIKTDAEVYGTGAKRAVPAKD 449

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVA 202
               +      + GE  +    +  E+    +     + EL    +   +   G  VD  
Sbjct: 450 VLLEHLAHKIDVIGELGRR---LQEELINNQQADLYWKIELPLSIVLAKMEISGIKVDRE 506

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   +    ++L+ ++         +    ++L   LF +    +   T+   +T 
Sbjct: 507 RLGAMQSELTERLSELESQIHQEAG-EEFNINSPKQLGHILFEKLEFPVIKKTKTGYSTA 565

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL   +  +P    + + R   ++     ++ L++ ++S  +   T      ++TGR 
Sbjct: 566 VNVLEKLRGYSPIIDHILDYR-TIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQTGRL 624

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378
           S      QN+P      ++                         +R   + S EG  ++ 
Sbjct: 625 SSTDPNLQNIPIRIEEGKK-------------------------IRQAFVPSHEGWHILS 659

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN-VAPAQVTKDQRAIGKVMEL 437
           +D + IE RVLA + G+    +AF+  ED++ +T  R F     ++VT + R   K +  
Sbjct: 660 SDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNF 719

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            + Y            +  + ++        ++  +E+   + +     E   E    + 
Sbjct: 720 GIVYGIS-----DYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYVET 774

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                                                     A +RR +P ++       
Sbjct: 775 I-----------------------------------------AHRRRYLPDIHASNFSVR 793

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                              R+ +NT  +          K+    +Q              
Sbjct: 794 SF---------------AERTAMNTPIQG---SAADIIKIAMINMQ-----------NEL 824

Query: 618 TKA--GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            K      ++L VHDE++ E PD +      L   +M S       +PLK E      +
Sbjct: 825 EKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVMDSAIK--LDVPLKVETSWGNNW 881


>gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1]
          Length = 845

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 89/507 (17%), Positives = 155/507 (30%), Gaps = 120/507 (23%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           +   E  L  +   +   G  +D+A      + V      L   + SL      + R  +
Sbjct: 443 MQELEMPLVPVLCRMESAGIGIDLAAFDNFLRQVKKSLDDLTASIYSLAG-KEFNIRSTQ 501

Query: 238 KLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           +    LF E GL           +T   VL S ++       +   R    +     L  
Sbjct: 502 QTAQVLFDELGLKARRKTPKGAYSTSNVVLESMRRDHDIVDLILQYR-TLEKLRSTYLEP 560

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L   ++  GRL  T   L A+ TGR S      QN+P                       
Sbjct: 561 LPRKVDVGGRLHTTFNQL-ATATGRLSSSNPNLQNIPIKGE------------------- 600

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                     +R+C   S+GK LV AD + IE R+LA M+ +   L+AF   ED++  T 
Sbjct: 601 ------FGPRMRACFKPSKGKLLVAADYSQIELRILAHMSMDPNLLQAFGGNEDIHRRTA 654

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
              F+    +V++D+R   K +                    G+     +          
Sbjct: 655 GLLFDKDIQEVSQDERRKAKTIN--------------FGLLYGMGPQKLS---------- 690

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                E        +     +  K  RV + + ++ +   +  E
Sbjct: 691 --------------------RELSISMEEAKEFISVYFSKLDRVRDFYQQIEE---KAQE 727

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
            G                             GR  +  D+ +  + +    R+       
Sbjct: 728 QGYVTTMA-----------------------GRRRLLPDINSRNTNMAQQARR------- 757

Query: 594 GGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP-DTDEFNASM 646
                  ++Q  + D++ + M+           G  +VL VHDE++ E      +     
Sbjct: 758 --TAVNTVIQGSAADVIKKAMLAVDSDSELRSLGSVMVLQVHDELLLEVDAPVAQKAGER 815

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           L  +M    S    +PL  E    + +
Sbjct: 816 LARVMAGVES--LEVPLLVEWGTGENW 840


>gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
 gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147]
          Length = 877

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 93/679 (13%), Positives = 184/679 (27%), Gaps = 158/679 (23%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVHDPVMPQVLKEALENTDVTIVAH 71
           L   G   + E     + AF + +          D +     P+                
Sbjct: 332 LETLGENYHREQ----IVAFAWGNAEKIYVSKNIDLLTKMKFPEN--------------- 372

Query: 72  NSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
              ++     VL +  ++++P+ +    ++                       K+     
Sbjct: 373 --TYDFKKNRVLLSHLDIELPLVK-FDAMLAKYLISTT------------EDNKISTIAR 417

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW-- 186
           L          E      K    +   LF    +    +     K +  L   EQE    
Sbjct: 418 LFNSGHLATDEEIFGKGTKIALPDDAVLFEHLARKIKVLALAKEKMMAELLENEQEHLLS 477

Query: 187 -------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
                   +   +   G  V       +    + +   L +E+  L      +    ++L
Sbjct: 478 DMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLASLTREIYDLAG-EEFNINSPKQL 536

Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF +  L +   T+   +T   VL     L+P   ++   R   ++     +  L+ 
Sbjct: 537 GVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQ-INKVQSTYVKGLIP 595

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +  DG++         ++TGR S      QN+P       +                  
Sbjct: 596 QIADDGKIHTRYVQD-LTQTGRLSSVDPNLQNIPVRLEEGRK------------------ 636

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R   + S+   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R 
Sbjct: 637 -------IRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRV 689

Query: 417 FNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F +     VT + R   K +   + Y               L +          +  E +
Sbjct: 690 FGIEKAEDVTANDRRNAKAVNFGVVYGIS-----DFGLARNLGITRKDAKNYIETYFERY 744

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
              + +   +     +    +       +        ++  V        +    +   G
Sbjct: 745 PGIKTYMENIVREARDKGFVETMSHRRRK--IPDINARNFNVRGF---AERTAINSPIQG 799

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
            A    K                                                     
Sbjct: 800 SAADILKI----------------------------------------------AMINLD 813

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSN 654
           K         +RD               ++L VHDEI+ + P  +      L    M   
Sbjct: 814 KAL------SARD-----------FKSKLLLQVHDEIILDVPLEELDEIKALVKQTMEEA 856

Query: 655 PSWAKGLPLKAEGYESKRY 673
              A  +PLK +    K +
Sbjct: 857 IELA--VPLKVDENTGKTW 873


>gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
 gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753]
          Length = 857

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 102/658 (15%), Positives = 190/658 (28%), Gaps = 142/658 (21%)

Query: 23  KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
            Y E+  +   AF      V L            L        +++  HNS      L  
Sbjct: 330 AYGEEGEITQCAF-LKSDTVHLV-TEGAEKAVMGLCSL---EGMSLCVHNSKPLFAWLDR 384

Query: 83  CFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
                         ++ A          +LK + E    ++ K+E      A        
Sbjct: 385 MGG---EARVSYDAMLAAYLLNPNASDYSLKRLQEEAGTAAPKLENETAWQAAVLPRVK- 440

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                         W+                  + + L   E  L  +   + + G+ V
Sbjct: 441 -------------NWQAASLLA----------NGQRKLLEEMEIPLAQVLARMENIGFLV 477

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256
           D        + ++ E   L +++         +    ++L   LF++ GL     T+   
Sbjct: 478 DGESIRVYGERLETEIEALQKQIYEEVGY-EFNINSPKQLGDALFVKLGLPSGKKTKTGY 536

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   +L   +   P    V + R   ++        +++ +  DGR+         +RT
Sbjct: 537 STNAEILEKLRYDHPAVELVLHYR-TLTKLKSTYCEGMLKVIGPDGRIHSNFNQ-TETRT 594

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +    EL                         R   +A EG  L
Sbjct: 595 GRISSTEPNLQNIPVRTELGREL-------------------------RKFFLAKEGWVL 629

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V AD + IE RVLA +A ++  +KAF+  ED++  T ++ F + P  VT   R+  K + 
Sbjct: 630 VDADYSQIELRVLAHIAHDENMIKAFQDKEDIHTITASQVFGMPPEMVTPLMRSRAKAVN 689

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y  GA      + +  +N++        +     +   + + + + E   E    +
Sbjct: 690 FGIVYGIGA-----FSLSKDINVSRKEAQRYIDDYLTLYSGVDRYMKEVVEKAKEDGYVE 744

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                   R        +  +        +        G A    K              
Sbjct: 745 TLFHR--RRYLPELTASNFNLRAFG---ERVARNMPIQGTAADIIKI------------- 786

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                                  +    R+L RE      +                 + 
Sbjct: 787 ----------------------AMVRVDRRLKRENMRARLI-----------------LQ 807

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
                         E++ E P+ +   A+ +    M    S    +P+ AE    K +
Sbjct: 808 VHD-----------ELIVEAPEDEAEQAARILTEEMEGAVS--LTVPMVAEASVGKTW 852


>gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20]
          Length = 945

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 102/705 (14%), Positives = 186/705 (26%), Gaps = 156/705 (22%)

Query: 8   FET----RSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV- 56
            ET             G+           D  ++  +   D     + D     ++P+  
Sbjct: 355 LETSLPADGDNGTRPLGVDVVGVLRPVEGDAALVSLS---DGSRAVVVDLT--EILPEDE 409

Query: 57  --LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
             L   L + +   +  ++      L     L +         +             +  
Sbjct: 410 AALARLLADVERPKLVADAKGSWHALS-ARGLTLD-GVVADPSLAGYLCRPEQRSYDVDT 467

Query: 112 VGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           + +  L +    + EG         GE+          +            +    +  +
Sbjct: 468 LTQRWLGIDLAAVNEG-GAGGDGGSGESQSAFDLEALTSEAVPASHLASAGRAAALLPLQ 526

Query: 171 I----FKRLEPLS----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +                  E  +      + D G  VD A+       +D        E 
Sbjct: 527 VVLDEQMVARDALGLFTDLEMPVAATLTVMEDAGIAVDDAVLQIRQTELDARV-THAAEG 585

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVF 277
                G   +    ++L+  LF E  +     T+T   T    L+        P    + 
Sbjct: 586 AYAAAGRELNLSSPKQLQAVLFDELKMPKTRKTKTGYTTDADALAGLYAKTSHPFLEHLL 645

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R          +  L +A+  DGR+  T Q   A+ TGR S      QN+P       
Sbjct: 646 EHRDAIKLRQT--VEGLRKAIQPDGRIHTTFQQTIAA-TGRLSSTDPNLQNIPARHEEGM 702

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQ 396
                                     +R      EG + L+ AD + IE R++A ++ +Q
Sbjct: 703 R-------------------------IREAFTVGEGYECLMTADYSQIEMRIMAHLSADQ 737

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF +GEDL+    A    +    VT  QR+  K M   L Y               
Sbjct: 738 ALIDAFRSGEDLHRYVAALVHGIDVEDVTAQQRSHVKAMSYGLAYG-----LSTFGLARQ 792

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                                            ++ A+  +  +
Sbjct: 793 ---------------------------------------LGIDNADAADLRNAYFARFGK 813

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +    L    EQ   +G                             GR     D+ ++
Sbjct: 814 VHDY---LESVVEQARRDGYTETM-----------------------FGRRRYLPDLTSD 847

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                       R            +Q  + DI+ + M++   A         I+L +HD
Sbjct: 848 N---RQRREMAERAALNAP------IQGSAADIVKKAMIDVDSALTERALASRILLQIHD 898

Query: 631 EIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E++ E    +      +L   M         +PL       + +R
Sbjct: 899 ELLIEVAPGEAEAVENLLKEQMGGAAE--LSVPLDVAVGRGRTWR 941


>gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 893

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/636 (14%), Positives = 184/636 (28%), Gaps = 143/636 (22%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKA 111
           + L++ L +  V  + H +   R   + C   +I         + A   G      +L  
Sbjct: 381 KELEDLLTSHAV--ITHEAKRLRHAFREC-GFEI-GELAEDVELEAYLLGPDQREYSLPT 436

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E   L           ++                  H   ++            T ++
Sbjct: 437 LSEKY-LQRSLPVAESAQLSLLRDFSELAGQAQVVYDLHEVLFKQLE---------TTQL 486

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            +        E  +      +   G  + + + + L + +  +    ++   +     V 
Sbjct: 487 AELYR---GLELPVQADLYELEKHGVAMSMDVLNQLLEELTEQVEVAEEAAYNAIGHKV- 542

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK--LTPQAIQVFNNRMRASRS 286
           +     +L+T LF E  +     T+   TT    L    +    P    +  +R +    
Sbjct: 543 NLASPMQLQTVLFEELQMPKTKKTKRGYTTNAEALVELYEKTQHPFLQHLLAHRDKIKMR 602

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
            +  +  L+ A+ +DGR+  T Q   A+ TGR S      QN+P  +             
Sbjct: 603 QI--VEGLISAVGADGRIHTTFQQTVAA-TGRLSSTEPNLQNIPARTAEGMR-------- 651

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                            +R   +   G   L+ AD + IE R++A M+ ++  ++AF++G
Sbjct: 652 -----------------IRGAFVPGTGFDYLLTADYSQIEMRLMAHMSKDEALIEAFKSG 694

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           EDL+ T  A  F V   +VT   R+  K     L Y            +  L        
Sbjct: 695 EDLHRTMAAMVFAVPVEEVTPALRSQIKATSYGLAYG-----LSSYGLSQQLG------- 742

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                  ++K+ + ++   V     E+ 
Sbjct: 743 --------------------------------ISVPEARKLKEKYFERFGGVGRFLGEVV 770

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +   +                                  GR     D+ +  +       
Sbjct: 771 EEARE--------------------------RGFTATMMGRRRYLPDLNSGNT---NLRA 801

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT 639
              R            +Q  + DI+   M    +          ++L VHDE+V E   +
Sbjct: 802 MAERAALNAP------IQGTAADIIKLAMHLVMRVLRERGLASRVLLQVHDELVLEVVAS 855

Query: 640 DEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
           +      +   +M+        LPL         ++
Sbjct: 856 ELNEVIQIVTDVMSGAAE--LSLPLDVSFGVGASWQ 889


>gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309]
 gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309]
          Length = 908

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 98/667 (14%), Positives = 189/667 (28%), Gaps = 155/667 (23%)

Query: 39  DHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
           D    + D     P   + L E L      IV H++   R  L +     +       T+
Sbjct: 362 DKEALVIDPVELSPKQEEALGEVLATASSLIV-HDAKGARHALSSR-GWTL-GGVEFDTM 418

Query: 98  VLARSNGL---PSALKA-VGEALKL-------SSQKMEEGKELIARFCKGETHECLYDRN 146
           + A           L+  +   L +        S+ + +  ++ A     +         
Sbjct: 419 LAAYLAHPDQRSHKLEDVLSRVLGVVIEEGEGDSEALFDLGDMGAGPSAAQVRAGKLAAY 478

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                   R   E       +T             E  L  L   + D G   D ++ + 
Sbjct: 479 LHPLASTLRSRLEESSEAALLT-----------DMEMPLSVLLGQMEDIGIAADTSVLNG 527

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVL 263
           L+  +        +   +     V +    ++L+  LF   GL     T+T        L
Sbjct: 528 LSDELGKAVDAAREGAWAAAGREV-NLSSPKQLQELLFDHFGLPKTKKTKTGYTTNADAL 586

Query: 264 SSNKKL--------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +                   +  +R R        +++L   + SDGR+  T     A+ 
Sbjct: 587 ADLHAKTSDEGGAGHDFLGFLLTHRDRIKLKQ--MVDSLSATVASDGRIHTTFSQ-VAAA 643

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR +      QN+P  S                              +R   +A EG +
Sbjct: 644 TGRLASSDPNLQNIPARSADGMR-------------------------IRGAFVAGEGFE 678

Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+ AD + IE R++A ++G++  ++AF +GEDL+ T  +  F    A+V+ ++R+  K 
Sbjct: 679 SLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKA 738

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
               L Y               L                                     
Sbjct: 739 TSYGLAYG-----LSSYGLAAQLG------------------------------------ 757

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                      ++  + ++  +V +    L                              
Sbjct: 758 ---IPVPEAAALRDRYFERFGKVRDYLEGLVAQAR------------------------- 789

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
             +       GR     D+ ++            R            +Q  + DI+   M
Sbjct: 790 -ADGYTQTMFGRRRYLPDLRSSN---RQRREMAERAALNAP------IQGSAADIVKIAM 839

Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEG 667
           +N   A         +++ +HDE++ E    +      +    M +       +PL    
Sbjct: 840 INVVDALSEAGLKSRLLVQIHDELLVEVAPGEAAAVEAIVRDRMATPVE--LSVPLDVAV 897

Query: 668 YESKRYR 674
              + ++
Sbjct: 898 GVGRSWQ 904


>gi|257125590|ref|YP_003163704.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
 gi|257049529|gb|ACV38713.1| DNA polymerase I [Leptotrichia buccalis C-1013-b]
          Length = 1046

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 80/614 (13%), Positives = 173/614 (28%), Gaps = 141/614 (22%)

Query: 86   LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
              I    +   L+     G   +L+       +    ++E    IA F   E       R
Sbjct: 546  FGIKCTEYFDILLARYVLG-TESLQE------IEEIILDEFGVEIATF---EEQFKKERR 595

Query: 146  NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195
             K     +  +  E+         ++          EQ           L  +   + + 
Sbjct: 596  KKDFSDVSDDVVCEFLSKRTFFIYKLEIIFRNRLQNEQFLNIFDKLESRLIPVLAQMEET 655

Query: 196  GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
            G  +D          ++ +   L  ++  L  G   +    ++L   LF +  +     T
Sbjct: 656  GIKIDKKYFSEFQNELEEKINMLQSDIYKLADG-EFNIDSPQQLGEVLFEKLQIPSGKKT 714

Query: 256  E---TTCQRVLS------SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +   +T   VL          +      +         +     +  + +  + + R+  
Sbjct: 715  KTGYSTNVEVLEMIANNRELTEDKRMIGKKLLEYRAYKKLLSTYIEPIPKLADKEERIHT 774

Query: 307  TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
            T    G + TGR S      QN+P  +                              +R+
Sbjct: 775  TFNQNG-TSTGRLSSANPNLQNIPVRTDDGIR-------------------------IRT 808

Query: 367  CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
              ++ EG  L+  D + IE RVLA ++ ++  ++A++  +DL+  T  + F         
Sbjct: 809  GFVSKEGHSLISFDYSQIELRVLAELSKDRHLVQAYQDNQDLHNLTARKIFFKTEED--- 865

Query: 427  DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
                                                    + +          NF     
Sbjct: 866  ----------------------------------------EISRHERSIAKVINFSILYG 885

Query: 487  ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
            +     + E         +    + +++ RV +  + + +  +                 
Sbjct: 886  KTPFGLSKELGITVQEASQYITTYFEEYPRVRKFLDIVTETAK----------------- 928

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                      +  +    G       +            Q  R           +VQ  +
Sbjct: 929  ---------LHGFVETFYGTRRYISGINATN---KNVQAQAVRMA------VNTVVQGTA 970

Query: 607  RDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKG 660
             +I+ + M+   +         ++L VHDE++ E  D   +     +  +M +   + K 
Sbjct: 971  ANIIKKVMIELHEEFKNDENIKMLLQVHDELIFEVRDEFAKEYMEKIEKIMENTVKF-KK 1029

Query: 661  LPLKAEGYESKRYR 674
            +PLKA G  +K + 
Sbjct: 1030 VPLKANGSVAKNWG 1043


>gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
 gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679]
          Length = 950

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 93/616 (15%), Positives = 184/616 (29%), Gaps = 132/616 (21%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
           L     + +P      T +           +++ +A         E +   A     +  
Sbjct: 442 LLESVGITLPT-PLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTLDLD 500

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-KEQELWYLDQTINDRGYC 198
           +     N                 +V       +    L    E  +  +   +   G  
Sbjct: 501 DMDGSSNTQADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHAGAQ 560

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257
           VD+     +      +  +  QE+   + G   + +  ++L+  LF + GL     T++ 
Sbjct: 561 VDMIRLTEMRDQFAAD-ARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTKSG 619

Query: 258 ---TCQRVLSSNKKL-------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRG 306
              T    L +  +              +  +R       +  + TL++A N  DGR+  
Sbjct: 620 SYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI--VQTLIDATNPRDGRIHT 677

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T +   A+ TGR S      QN+P  + +  E                         +RS
Sbjct: 678 TFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRS 711

Query: 367 CVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             +  EG + L+ +D + +E R++A ++G++  ++AF +G D +    +  + +   ++T
Sbjct: 712 AFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEIT 771

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            DQR+  K M   L                GL+    A  +K                  
Sbjct: 772 SDQRSHVKAMSYGL--------------AYGLSTYGLAQQLKI----------------- 800

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                             E ++  +     +V E    L     +               
Sbjct: 801 -------------SPKEAESLRNQYFATFGKVHEYLESLVSTARE--------------- 832

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                              GR   +  + +    +        R            +Q  
Sbjct: 833 -----------KGYTETIYGRRRYFPGLKSPNRAVRDA---AERAALNAP------IQGS 872

Query: 606 SRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658
           + DI+   M+ A+           I+L +HDE+V E    +   A+ L    M    + A
Sbjct: 873 AADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVRNAMEHAVTMA 932

Query: 659 KGLPLKAEGYESKRYR 674
             +PL A       ++
Sbjct: 933 --VPLDASTGIGSDWQ 946


>gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1]
 gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1]
          Length = 1015

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 89/663 (13%), Positives = 196/663 (29%), Gaps = 144/663 (21%)

Query: 48   VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP---IHRWICTLVLARSNG 104
              D  + ++L++ L+      V H+      +LK+    D         + T + +    
Sbjct: 457  SSDQALLEMLRKFLQKNSSITVLHDYKKHLGLLKSLKLFDSNNSFGTPLLDTRLASYLLE 516

Query: 105  LPS---ALKAVGEAL--------KLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHRE 152
                   L+ + E           L   + ++G+ +L+       + E   ++       
Sbjct: 517  PDFRAETLENMAEHYLDIQSDEDNLGENEAKQGELDLLIDDGMPASEEETNEKQTQACEA 576

Query: 153  AWRLFGEYCKGDVT---VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
             +       +        T +  K+   ++  E  +  + + + D G  VD+    ++ +
Sbjct: 577  KFLRTTLLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSSMLK 636

Query: 210  IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLS- 264
                +          +    V + +  ++L+  LF   GL     T+    TT    L  
Sbjct: 637  QFSADAEFAQNMAWKVAGSSV-NLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQA 695

Query: 265  ---SNKKLTPQAIQV--FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
                     P +  +         ++   + + +L++A + D R   T      + TGR 
Sbjct: 696  MYVKLDPEEPASQFLGALLKHRETNKLKQI-VQSLIDAAHYDDRRIHTTFEQTIAATGRL 754

Query: 320  SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378
            S      QN+P  + +  E                         +R+  I  E  + L+ 
Sbjct: 755  SSADPNLQNIPNRNAAGRE-------------------------IRAAFIPGEEFEYLMS 789

Query: 379  ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
             D + +E R++A  + ++  ++AF +G D +    +  + +   QV+ DQR+  K M   
Sbjct: 790  CDYSQVELRIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVSPDQRSHVKAMSYG 849

Query: 439  LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
            L Y               L+++                                      
Sbjct: 850  LAYG-----LSTYGLAKQLSISPA------------------------------------ 868

Query: 499  IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                 E +K  +      V +    L    ++                            
Sbjct: 869  ---EAEMLKNKYFDTFGNVHDYLESLVSKAKE--------------------------LG 899

Query: 559  ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  GR   +  + +N      +     R            +Q  + DI+   M+   
Sbjct: 900  YTETMFGRRRYFPQLSSNN---RASREAAERGALNAP------IQGTAADIMKLAMLRVD 950

Query: 619  ------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESK 671
                  K    ++L +HDE++ E    ++     +    M +       +PL        
Sbjct: 951  LGLREAKVRSRVILQIHDELILEISHGEQAQVENIVRKAMENAVH--LDVPLNVSTGVGV 1008

Query: 672  RYR 674
             ++
Sbjct: 1009 DWQ 1011


>gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
 gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13]
 gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27]
          Length = 912

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 83/667 (12%), Positives = 196/667 (29%), Gaps = 151/667 (22%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVL-----KEALENTDVTIVAHNSYFERTVLKACFN 85
           +      ++  +  +   H  ++ + +        +   D+  +++N       L     
Sbjct: 369 LGIIISTEEKDL-YFPLNHGGLLAKNIDKNLVVSFISELDIKFISYNFK----ALLN-LG 422

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           ++         +++A                     K++    ++               
Sbjct: 423 INFKSMYMD--MMIAYHLISSQT-------------KIDPIIPIVEYSKLEPKDFKTAFG 467

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFK----------RLEPLSSKEQELWYLDQTINDR 195
                    + F +Y          I+             + L   E  L  +   +  +
Sbjct: 468 KINVELITAQDFSKYLSAISIGILAIYDELNYLLKKEDLYKILMENEMPLIPVLSLMERK 527

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +DV      +  +D E  K+++ +         +    ++L   LF++  L     T
Sbjct: 528 GIEIDVQYFKNYSLELDKELLKIEKAIYEEAG-EEFNINSPKQLGDILFVKLNLPSGKKT 586

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL   +       ++  +  + ++     ++TL   ++ + R+  T   +G
Sbjct: 587 KTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIG 646

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  +    +                         +R   +A  
Sbjct: 647 -TATGRLSSSDPNLQNIPVKTDDGIK-------------------------IREGFVAGA 680

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           GK L+  D + +E RVL  M+ ++  ++A+   +DL+  T  R FN++ ++         
Sbjct: 681 GKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSET-------- 732

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
                                               +          NF     +     
Sbjct: 733 -----------------------------------VSREQRTIAKIINFSIIYGKTPFGL 757

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           A E            K + +++ +V+    E+ +  E+                      
Sbjct: 758 AKELKIPVKDASEYIKKYFEQYPKVTSFEREVIEFGEE---------------------- 795

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
               +  +    GR      + +      T   Q  R           ++Q  + ++L +
Sbjct: 796 ----HGYVKTLFGRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKK 842

Query: 613 GMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
            M+        K    ++L VHDE++ E  ++     S +   +M +     + + L   
Sbjct: 843 VMVKVYDVLKDKEEIALLLQVHDELIFEVEESSVEKYSEILADIMKNTVQL-EDVKLNIN 901

Query: 667 GYESKRY 673
               K +
Sbjct: 902 INIGKNW 908


>gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase
          Length = 924

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 102/763 (13%), Positives = 215/763 (28%), Gaps = 195/763 (25%)

Query: 4   LFIDFETRSPID------LTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPV--- 52
           + ID ET           + K  +  Y  ++   ++                 H      
Sbjct: 209 VVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENLMK 268

Query: 53  ------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
                 + + L++ LE  D+  +AHN  F+   L+A  ++ + I  W  T+++       
Sbjct: 269 GNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIW-DTMLI-HIIDYR 326

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
               +  + L           ++       +  +   +         W +   Y   D  
Sbjct: 327 GERYSWSKRLAWLET------DMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLADDCD 380

Query: 167 VTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           VT  + ++  P             +     +Y    I   G  VD      L    + E 
Sbjct: 381 VTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSYEKEI 440

Query: 216 TKLDQELESLT---------------------------------------------YGLV 230
           ++L+ ++                                                  G  
Sbjct: 441 SRLEDKMREFPEGVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSKGGDK 500

Query: 231 SSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L   LF   GL      +    +T    L      +    +V     +A+  
Sbjct: 501 INFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFV-KVLMEFRKANHL 559

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
               ++ L   ++ D  +  +    G + TGR S      Q  PR               
Sbjct: 560 YNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRK-------------- 604

Query: 347 PTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                 +   L   +  ++    +   +G  +V  D + +E R+L       + +  + +
Sbjct: 605 -----VNTPTLFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRS 659

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G DL+    + +F VA  +V+KDQR   K ++  + YQ  A+   +     G+       
Sbjct: 660 GADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGI------- 712

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                 CE   K + ++  +VS+   + 
Sbjct: 713 --------------------------------TMSEDECEIFIKKYFKRFPKVSKWIRDT 740

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +  +                              +   +G +    D+ +      +  
Sbjct: 741 KKHVKD--------------------------ISTVKTLTGATRNLPDIDSIDQ---SKA 771

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPD 638
            +  R+           +Q    D     ++   +          I +TVHD IV + P 
Sbjct: 772 NEAERQA------VNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSIVLDCPK 825

Query: 639 TDE-FNASMLYHLMTSNPSWAK------GLPLKAEGYESKRYR 674
            +    A  + H+M +   + +       +P+ +E    + Y 
Sbjct: 826 DEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNYG 868


>gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 897

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 105/670 (15%), Positives = 188/670 (28%), Gaps = 136/670 (20%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDP----------VMPQVLKEALENTDVTIVAHNSYF 75
               ++  AF             H             + + L+  +E   + + AH+   
Sbjct: 338 RSAPLVGLAFA-GAGRAFYLPLGHRYLGAPAPLPAADVREGLRPLVE-AALPLHAHDLKS 395

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALK--LSSQKMEEGKELI 130
               L     L         T +++R         AL  V          +   +G +  
Sbjct: 396 AAHALAR-LGLA-RSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRSPADGAKRG 453

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
           A   +G   E +             L  +  +     T  +          E+ L  +  
Sbjct: 454 APGLEGLEVERVAAWAGACAAALPDLAAKLAE--ALETERLGALYR---EVERPLVPVLV 508

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  VD      ++         L+  + +       +     +L   LF+E  L 
Sbjct: 509 EMERAGILVDRGAMEGMSAEFGKAMQDLEARIHAAAGHP-FNVASTRELAQVLFVELELP 567

Query: 251 LED---LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRG 306
           +        +T Q VL    +       V  +R   S+     ++ L + ++  DGR+  
Sbjct: 568 VVKRLKTGPSTDQDVLEKLAEQHALPRLVLEHR-SLSKLKGTYVDALPQLVDPADGRIHT 626

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T    GA+ TGR S      QN+P  +                          +S  +R 
Sbjct: 627 TFHQAGAA-TGRLSSSDPNLQNIPVRTE-------------------------LSRRIRQ 660

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
             +A  G +L+ AD + IE R+LA  + +   L+AF   ED++  T A +F VAP QVT 
Sbjct: 661 AFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVAPEQVTP 720

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           DQR I KV+   + Y            +  L+L         +     +     +  W  
Sbjct: 721 DQRRIAKVLNFGIAYG-----LSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAV 775

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           E            G A         +    ++     L  A E+T               
Sbjct: 776 EEARAKGESRTLFGRA---------RAMPEIAARNPALRNAAERTA-------------- 812

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                                     +            ++     +     E       
Sbjct: 813 --------------------------INTPIQGTAADVVKIAMIRVHAALAQER------ 840

Query: 607 RDILAEG--MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663
                E   ++        +VL        E P+ +      L    M         +PL
Sbjct: 841 ----REARLLLQVHDE---LVL--------EVPERELEPVEALVRREMEGAAR--LKVPL 883

Query: 664 KAEGYESKRY 673
           + +    + +
Sbjct: 884 EVQVGHGQTW 893


>gi|260663490|ref|ZP_05864380.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN]
 gi|260552031|gb|EEX25084.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN]
          Length = 886

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 90/650 (13%), Positives = 173/650 (26%), Gaps = 119/650 (18%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
            F   D    L     D +    LK+ LE+  V     N+  +   L     +D+     
Sbjct: 341 GFVIGDGKWWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR-LGVDLAGVD- 398

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
              L+ +           +G  L  +    +   +        +      D     H   
Sbjct: 399 FDLLLASYLLNTSENANDLG-VLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLAK 457

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
                   K  +       ++L      E+ L  +   +   G  VD A    +   +  
Sbjct: 458 KARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVE 517

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270
              +L+Q +         +    ++L   LF +  L +   T+   +T   VL       
Sbjct: 518 REAELEQAIYQEAG-EEFNINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDVLEKLADRA 576

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    +   R   S+     +  L++ ++ D +   T      + TGR S      QN+P
Sbjct: 577 PIVQDILAYRQ-ISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIP 635

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVL 389
                                            +R     S  G K+  +D + +E RVL
Sbjct: 636 VRLEEGR-------------------------QIRRAFTPSAPGWKIFSSDYSQVELRVL 670

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A + G++     F  G+D++  T  R F++ +  +VT + R   K +   + Y       
Sbjct: 671 AHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGIS---- 726

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   ++++         S  +E+   E +   + E   +    +            
Sbjct: 727 -DYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR------- 778

Query: 509 AWRQKHSRV--SELWNE--LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
             R+    +            +    T   G A    K   +                  
Sbjct: 779 --RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIR----------------- 819

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                                +  R                        ++         
Sbjct: 820 --------------MEKALKERGLRARM---------------------LLQIHDE---- 840

Query: 625 VLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                  +V E P+ +      L   +M S       +PLK E      +
Sbjct: 841 -------LVFEAPEEEIATLEELVPSIMDSAVK--LDVPLKVESKSGATW 881


>gi|299783433|gb|ADJ41431.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716]
          Length = 886

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 90/650 (13%), Positives = 173/650 (26%), Gaps = 119/650 (18%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
            F   D    L     D +    LK+ LE+  V     N+  +   L     +D+     
Sbjct: 341 GFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR-LGVDLAGVN- 398

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
              L+ +           +G  L  +    +   +        +      D     H   
Sbjct: 399 FDLLLASYLLNTSENANDLG-VLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLAK 457

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
                   K  +       ++L      E+ L  +   +   G  VD A    +   +  
Sbjct: 458 KARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVE 517

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270
              +L+Q +         +    ++L   LF +  L +   T+   +T   VL       
Sbjct: 518 REAELEQAIYQEAG-EEFNINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDVLEKLADRA 576

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    +   R   S+     +  L++ ++ D +   T      + TGR S      QN+P
Sbjct: 577 PIVQDILAYRQ-ISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIP 635

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVL 389
                                            +R     S  G K+  +D + +E RVL
Sbjct: 636 VRLEEGR-------------------------QIRRAFTPSAPGWKIFSSDYSQVELRVL 670

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A + G++     F  G+D++  T  R F++ +  +VT + R   K +   + Y       
Sbjct: 671 AHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGIS---- 726

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   ++++         S  +E+   E +   + E   +    +            
Sbjct: 727 -DYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR------- 778

Query: 509 AWRQKHSRV--SELWNE--LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
             R+    +            +    T   G A    K   +                  
Sbjct: 779 --RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIR----------------- 819

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                                +  R                        ++         
Sbjct: 820 --------------MEKALKERGLRARM---------------------LLQIHDE---- 840

Query: 625 VLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                  +V E P+ +      L   +M S       +PLK E      +
Sbjct: 841 -------LVFEAPEEEIATLEELVPSIMDSAVK--LDVPLKVESKSGATW 881


>gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
 gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2]
          Length = 912

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 83/667 (12%), Positives = 196/667 (29%), Gaps = 151/667 (22%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVL-----KEALENTDVTIVAHNSYFERTVLKACFN 85
           +      ++  +  +   H  ++ + +        +   D+  +++N       L     
Sbjct: 369 LGIIISTEEKDL-YFPLNHGGLLAKNIDKNLVVSFISELDIKFISYNFK----ALLN-LG 422

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           ++         +++A                     K++    ++               
Sbjct: 423 INFKSMYMD--MMIAYHLISSQT-------------KIDPIIPIVEYSKLEPKDFKTAFG 467

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFK----------RLEPLSSKEQELWYLDQTINDR 195
                    + F +Y          I+             + L   E  L  +   +  +
Sbjct: 468 KINVELITAQDFSKYLSAISIGILAIYDELNYLLKKEDLYKILMKNEMPLIPVLSLMERK 527

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +DV      +  +D E  K+++ +         +    ++L   LF++  L     T
Sbjct: 528 GIEIDVQYFKNYSLELDKELLKIEKAIYEEAG-EEFNINSPKQLGDILFVKLNLPSGKKT 586

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL   +       ++  +  + ++     ++TL   ++ + R+  T   +G
Sbjct: 587 KTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIG 646

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
            + TGR S      QN+P  +    +                         +R   +A  
Sbjct: 647 -TATGRLSSSDPNLQNIPVKTDDGIK-------------------------IREGFVAGA 680

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           GK L+  D + +E RVL  M+ ++  ++A+   +DL+  T  R FN++ ++         
Sbjct: 681 GKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSET-------- 732

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
                                               +          NF     +     
Sbjct: 733 -----------------------------------VSREQRTIAKIINFSIIYGKTPFGL 757

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           A E            K + +++ +V+    E+ +  E+                      
Sbjct: 758 AKELKIPVKDASEYIKKYFEQYPKVTSFEREVIEFGEE---------------------- 795

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
               +  +    GR      + +      T   Q  R           ++Q  + ++L +
Sbjct: 796 ----HGYVKTLFGRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKK 842

Query: 613 GMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAE 666
            M+        K    ++L VHDE++ E  ++     S +   +M +     + + L   
Sbjct: 843 VMVKVYDVLKDKEEIALLLQVHDELIFEVEESSVEKYSEILADIMKNTVQL-EDVKLNIN 901

Query: 667 GYESKRY 673
               K +
Sbjct: 902 INIGKNW 908


>gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2]
          Length = 892

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 95/668 (14%), Positives = 185/668 (27%), Gaps = 157/668 (23%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D     H++      L      ++  
Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 407

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K                          + N    
Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHL----------NVALGEVEDNSDQA 450

Query: 151 REAW--RLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYC 198
              +    F E  +  V VT  +   +E               E  +     ++   G  
Sbjct: 451 MLDFGEDHFAESMERAVAVT-RLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIA 509

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257
           VD+ +   L    D   T+ ++         + +    ++L+  LF +  +     T++ 
Sbjct: 510 VDMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTKSG 568

Query: 258 --TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
             T    L+   +    P    +  +R          ++ L++ +  DGR+  T     A
Sbjct: 569 YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA 626

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
             TGR S      QN+P  +                              +R   +  EG
Sbjct: 627 -VTGRLSSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEG 660

Query: 374 KK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
            + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  
Sbjct: 661 YESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKI 720

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K M                    GL+                                  
Sbjct: 721 KAMNYG--------------LAYGLS------------------------------AYGL 736

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           + +        + +   +  +  +V E    L +  +Q    G                 
Sbjct: 737 SNQLKVSVGEAKELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------- 782

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR     D+ +             R            +Q  + D++  
Sbjct: 783 ------------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKL 821

Query: 613 GMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M+   +          ++L VHDE++ E    +E     +  + M         +PL  
Sbjct: 822 AMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTV 879

Query: 666 EGYESKRY 673
                + +
Sbjct: 880 SIGVGRSW 887


>gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1]
 gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2]
 gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1]
 gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1]
          Length = 892

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 95/668 (14%), Positives = 185/668 (27%), Gaps = 157/668 (23%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D     H++      L      ++  
Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 407

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K                          + N    
Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHL----------NVALGEVEDNSDQA 450

Query: 151 REAW--RLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYC 198
              +    F E  +  V VT  +   +E               E  +     ++   G  
Sbjct: 451 MLDFGEDHFAESMERAVAVT-RLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIA 509

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257
           VD+ +   L    D   T+ ++         + +    ++L+  LF +  +     T++ 
Sbjct: 510 VDMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTKSG 568

Query: 258 --TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
             T    L+   +    P    +  +R          ++ L++ +  DGR+  T     A
Sbjct: 569 YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA 626

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
             TGR S      QN+P  +                              +R   +  EG
Sbjct: 627 -VTGRLSSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEG 660

Query: 374 KK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
            + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  
Sbjct: 661 YESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKI 720

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K M                    GL+                                  
Sbjct: 721 KAMNYG--------------LAYGLS------------------------------AYGL 736

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           + +        + +   +  +  +V E    L +  +Q    G                 
Sbjct: 737 SNQLKVSVGEAKELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------- 782

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR     D+ +             R            +Q  + D++  
Sbjct: 783 ------------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKL 821

Query: 613 GMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M+   +          ++L VHDE++ E    +E     +  + M         +PL  
Sbjct: 822 AMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTV 879

Query: 666 EGYESKRY 673
                + +
Sbjct: 880 SIGVGRSW 887


>gi|227515613|ref|ZP_03945662.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086043|gb|EEI21355.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 916

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 90/650 (13%), Positives = 173/650 (26%), Gaps = 119/650 (18%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
            F   D    L     D +    LK+ LE+  V     N+  +   L     +D+     
Sbjct: 371 GFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR-LGVDLAGVN- 428

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
              L+ +           +G  L  +    +   +        +      D     H   
Sbjct: 429 FDLLLASYLLNTSENANDLG-VLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLAK 487

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
                   K  +       ++L      E+ L  +   +   G  VD A    +   +  
Sbjct: 488 KARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVE 547

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270
              +L+Q +         +    ++L   LF +  L +   T+   +T   VL       
Sbjct: 548 REAELEQAIYQEAG-EEFNINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDVLEKLADRA 606

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    +   R   S+     +  L++ ++ D +   T      + TGR S      QN+P
Sbjct: 607 PIVQDILAYRQ-ISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIP 665

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVL 389
                                            +R     S  G K+  +D + +E RVL
Sbjct: 666 VRLEEGR-------------------------QIRRAFTPSAPGWKIFSSDYSQVELRVL 700

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A + G++     F  G+D++  T  R F++ +  +VT + R   K +   + Y       
Sbjct: 701 AHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGIS---- 756

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   ++++         S  +E+   E +   + E   +    +            
Sbjct: 757 -DYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR------- 808

Query: 509 AWRQKHSRV--SELWNE--LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
             R+    +            +    T   G A    K   +                  
Sbjct: 809 --RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIR----------------- 849

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                                +  R                        ++         
Sbjct: 850 --------------MEKALKERGLRARM---------------------LLQIHDE---- 870

Query: 625 VLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                  +V E P+ +      L   +M S       +PLK E      +
Sbjct: 871 -------LVFEAPEEEIATLEELVPSIMDSAVK--LDVPLKVESKSGATW 911


>gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1]
 gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC
           27678]
 gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1]
          Length = 949

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/616 (15%), Positives = 183/616 (29%), Gaps = 132/616 (21%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
           L     + +P      T +           +++ +A         E +   A     +  
Sbjct: 441 LLESVGITLPT-PLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTLDLD 499

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-KEQELWYLDQTINDRGYC 198
           +     N                 +V       +    L    E  +  +   +   G  
Sbjct: 500 DMDGSSNTQADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHAGAQ 559

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257
           VD+     +      +  +  QE+   + G   + +  ++L+  LF + GL     T++ 
Sbjct: 560 VDMIRLTEMRDQFAAD-ARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTKSG 618

Query: 258 ---TCQRVLSSNKKL-------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRG 306
              T    L +  +              +  +R       +  + TL++A N  DGR+  
Sbjct: 619 SYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI--VQTLIDATNPRDGRIHT 676

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T +   A+ TGR S      QN+P  + +  E                         +RS
Sbjct: 677 TFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRS 710

Query: 367 CVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             +  EG + L+ +D + +E R++A ++G++  ++AF +G D +    +  + +   ++T
Sbjct: 711 AFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEIT 770

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            DQR+  K M   L                GL+    A  +K                  
Sbjct: 771 SDQRSHVKAMSYGL--------------AYGLSTYGLAQQLKI----------------- 799

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                             E ++  +     +V E    L     +               
Sbjct: 800 -------------SPKEAESLRNQYFATFGKVHEYLESLVSTARE--------------- 831

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                              GR   +  + +    +        R            +Q  
Sbjct: 832 -----------KGYTETIYGRRRYFPGLKSPNRAVRDA---AERAALNAP------IQGS 871

Query: 606 SRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658
           + DI+   M+ A            I+L +HDE+V E    +   A+ L    M    + A
Sbjct: 872 AADIMKIAMIRAADSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVRNAMEHAVTMA 931

Query: 659 KGLPLKAEGYESKRYR 674
             +PL A       ++
Sbjct: 932 --VPLDASTGIGSDWQ 945


>gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010]
 gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010]
          Length = 944

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/641 (14%), Positives = 180/641 (28%), Gaps = 140/641 (21%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV---- 112
           L+  L+     IV H    +  +L +   LD+    W  T +            ++    
Sbjct: 417 LQRFLDGHADRIVVHGYKEQSHILAS-LGLDLA-EPWFDTKLAGYLVQPDYHADSLEQAA 474

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              L+L     ++  +                                 K D      + 
Sbjct: 475 SHFLQLQLDNADDVAQGQLDLSGDVDPADQRKDLLHMAMVRALADMLAAKIDEREQFRLL 534

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           + +E        + ++   +   G  VD      +     V+     +         V +
Sbjct: 535 QSIE------LPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDAQETAWQFAGSRV-N 587

Query: 233 SRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK-------KLTPQAIQVFNNRM 281
            +  ++L+  LF + GL     T++    T    L           +       +  +R 
Sbjct: 588 LQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRE 647

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                 +  + +L++A+N D     T      + TGR S      QN+P  +    E   
Sbjct: 648 TNKLKQI--VQSLIDAVNPDDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAEGRE--- 702

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLK 400
                                 +RS  +  EG + L+ +D + +E R++A ++G+   ++
Sbjct: 703 ----------------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIE 740

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D +    +  + +    +T DQR   K M   L                GL+  
Sbjct: 741 AFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGL--------------AYGLSTY 786

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
             A  +K                                    +R+K  +     +V E 
Sbjct: 787 GLAQQLKI------------------------------SPGEADRLKSQYFATFGKVHEY 816

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              L     +                                  GR   +  + +     
Sbjct: 817 LESLVAGARE--------------------------KGYTETMFGRRRYFPGLQSPN--- 847

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                   R            +Q  + DI+   M++A+ A         I+L +HDE+V 
Sbjct: 848 RNIRDAAERGALNAP------IQGSAADIMKIAMIHASDALAKAKVRSRIILQIHDELVV 901

Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
           E    +    + L    M      A  +PL         ++
Sbjct: 902 EIAPGEVEQVTGLVRDAMEHAVDLA--VPLDVSTGIGSDWQ 940


>gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44]
 gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44]
          Length = 877

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/590 (15%), Positives = 166/590 (28%), Gaps = 125/590 (21%)

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              R     ++A                            L  RF          D    
Sbjct: 404 KTARVHDMSLIAYLLDPTRTN------YGYL--------YLTERFSVPSIANGSVDVECV 449

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
           +  +A     E          E++   E   + E  L +    +   G  +D        
Sbjct: 450 SMVKALLAMNEVACESARRE-ELWSLYE---TIELPLIHTLVVMEKNGIYIDTEKLAETT 505

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
                E T++ +E+  L      +    ++L   LF +  L +   T+   +T   VL  
Sbjct: 506 ARFKEELTQVQEEIYELAG-ETFNINSPKQLGVILFEKLNLPIIKKTKTGYSTDAEVLDM 564

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +  +P   ++   R   ++        L   +N       T      + TGR S     
Sbjct: 565 LRHESPIVEKILAYR-SVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPN 623

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384
            QN+P  +    E                         +R+      G   LV AD + I
Sbjct: 624 LQNIPVRTEKGRE-------------------------IRALFYPGAGYDTLVSADYSQI 658

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++G++  +KAF  G+D++  T A     +  +VT ++R+  K +   + Y   
Sbjct: 659 ELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIYGIS 718

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                    +  L +         +     +   + +   M +   E        G   E
Sbjct: 719 -----DFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQRE 773

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                 R  + R     +   +    T   G A    K                      
Sbjct: 774 LPDINSRNFNRR-----SFAERTAMNTPIQGTAADIIKL--------------------- 807

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                          +N   ++L  +               SR                +
Sbjct: 808 --------------AMNQVEQKLEEQNF------------TSR----------------L 825

Query: 625 VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +L VHDE+V E  +++      L    M S       +PL  + + ++ +
Sbjct: 826 LLQVHDELVLEVVNSELEAIEELLRSTMQSVVE--LQVPLIVDVHHAENW 873


>gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
 gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745]
          Length = 873

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/590 (15%), Positives = 166/590 (28%), Gaps = 125/590 (21%)

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              R     ++A                            L  RF          D    
Sbjct: 400 KTARVHDMSLIAYLLDPTRTN------YGYL--------YLTERFSVPSIANGSVDVECV 445

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
           +  +A     E          E++   E   + E  L +    +   G  +D        
Sbjct: 446 SMVKALLAMNEVACESARRE-ELWSLYE---TIELPLIHTLVVMEKNGIYIDTEKLAETT 501

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
                E T++ +E+  L      +    ++L   LF +  L +   T+   +T   VL  
Sbjct: 502 ARFKEELTQVQEEIYELAG-ETFNINSPKQLGVILFEKLNLPIIKKTKTGYSTDAEVLDM 560

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +  +P   ++   R   ++        L   +N       T      + TGR S     
Sbjct: 561 LRHESPIVEKILAYR-SVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPN 619

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384
            QN+P  +    E                         +R+      G   LV AD + I
Sbjct: 620 LQNIPVRTEKGRE-------------------------IRALFYPGAGYDTLVSADYSQI 654

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++G++  +KAF  G+D++  T A     +  +VT ++R+  K +   + Y   
Sbjct: 655 ELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIYGIS 714

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                    +  L +         +     +   + +   M +   E        G   E
Sbjct: 715 -----DFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQRE 769

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                 R  + R     +   +    T   G A    K                      
Sbjct: 770 LPDINSRNFNRR-----SFAERTAMNTPIQGTAADIIKL--------------------- 803

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                          +N   ++L  +               SR                +
Sbjct: 804 --------------AMNQVEQKLEEQNF------------TSR----------------L 821

Query: 625 VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +L VHDE+V E  +++      L    M S       +PL  + + ++ +
Sbjct: 822 LLQVHDELVLEVVNSELEAIEELLRSTMQSVVE--LQVPLIVDVHHAENW 869


>gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
 gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175]
          Length = 884

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 94/652 (14%), Positives = 197/652 (30%), Gaps = 122/652 (18%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNLDIP 89
            A  F +        +   V  +V K+ L +  V        F+     VL   F  D+ 
Sbjct: 340 IAVAFGNEKNVFVTDLDTAVASEVFKKWLSDASVEKHL----FDTKAAKVLAHRFGFDLK 395

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             ++    +LA        +K + +  +     +    E +  + KG   +   D+    
Sbjct: 396 GAKY-DVSLLAYLVDTNDIVKEISDVARRVDVTILSSDEAV--YGKGVKIQIPEDKEV-W 451

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTL 207
           ++          K    + + + +  +     E EL    +   +  +G  VD      +
Sbjct: 452 NQHLAAKVFTIAKAPEKLLKRLEENEQTHLYWEMELPLSDILARMEIQGIRVDRERLVEM 511

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
               +    +++QE+  L      +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 512 GVEFEERLKEIEQEIYELAG-EEFNINSTKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 570

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
                 P    +   R   ++     +  L   +  DG++         ++TGR S    
Sbjct: 571 KLAHQAPIVELILEYRQ-LAKLNSTYVEGLQAYIQEDGKIHTRFIQN-LTQTGRLSSVDP 628

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAG 383
             QN+P  ++                             +R   +   +  K++ +D + 
Sbjct: 629 NLQNIPIRTKEGRR-------------------------IRYAFLPEHDDWKILSSDYSQ 663

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQ 442
           IE RVLA +AG++  ++AF+   D++  T  R F ++ P  VT + R   K +   + Y 
Sbjct: 664 IELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNPDDVTSEMRRQAKAVNFGIVYG 723

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                      +  LN++        +   EE++  ++F   + +   E    +      
Sbjct: 724 IS-----DYGLSQNLNISRKRAKEFIDRYLEEFQGVKDFMESIVKEAREKDYVETLFHR- 777

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             R        +  +        +    +   G A    K   + L    +++     +L
Sbjct: 778 -RRYLPDIHSSNFNLRSF---AERTAMNSPIQGSAADILKMAMIELDREMRERKFKANLL 833

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
                                                               +       
Sbjct: 834 ----------------------------------------------------LQVHDELI 841

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
             V    DE+          +   L   +M +  S    +PL+A+      +
Sbjct: 842 FEVPQ--DEL---------ESLQSLVEGVMENAVS--LKVPLRADSNVGDNW 880


>gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K]
 gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K]
          Length = 897

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/665 (15%), Positives = 185/665 (27%), Gaps = 134/665 (20%)

Query: 30  VILFAFGFDDHPVELWDCVHD----------PVMPQVLKEALENTDVTIVAHNSYFERTV 79
           ++  AF             H           P + + L+  +E   + + AH+       
Sbjct: 342 LVGLAFA-GAGRAFYLPLGHRYLGAPAPLAPPDVREGLRPLVE-AALPLHAHDLKAAAHA 399

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA---LKLSSQKMEEGKELIARF 133
           L     L         T +++R         AL  V       +L     +  K      
Sbjct: 400 LAR-LGLA-RSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRSPADGAKRGAPGL 457

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
              E                          +      +++        E+ L  +   + 
Sbjct: 458 EGLEVERVAAWAGACAASLPDLAAKLAEGLEAERLSPLYR------EVERPLVPVLVEME 511

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  VD      ++         L+  + +       +     +L   LF+E  L +  
Sbjct: 512 RTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHP-FNVASTRELAQVLFVELELPVVK 570

Query: 254 ---LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQ 309
                 +T Q VL    +       V  +R   S+     ++ L + ++  DGR+  T  
Sbjct: 571 RLKTGPSTDQDVLEKLAEQHALPRLVLEHR-SLSKLKGTYVDALPQLVDPADGRIHTTFH 629

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
             GA+ TGR S      QN+P  +                          +S  +R   +
Sbjct: 630 QAGAA-TGRLSSSDPNLQNIPVRTE-------------------------LSRRIRQAFV 663

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A  G +L+ AD + IE R+LA  + +   L+AF   ED++  T A +F VAP QVT DQR
Sbjct: 664 APAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQR 723

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
            I KV+   + Y            +  L+L         +     +     +  W  E  
Sbjct: 724 RIAKVLNFGIAYG-----LSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEA 778

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                     G A         +    +      L  A E             R  +   
Sbjct: 779 RAKGESRTLFGRA---------RAMPEIGAPNPALRNAAE-------------RTAINTP 816

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                 + + + +          V +  +      R                        
Sbjct: 817 IQGTAADIVKIAMI--------RVHDALAQERRAARL----------------------- 845

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
               ++        +VL        E P+ +      L    M         +PL+ +  
Sbjct: 846 ----LLQVHDE---LVL--------EVPERELEPVEALVRREMEGAAR--LKVPLEVQVG 888

Query: 669 ESKRY 673
             + +
Sbjct: 889 HGQTW 893


>gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
 gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104]
          Length = 431

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/518 (14%), Positives = 158/518 (30%), Gaps = 111/518 (21%)

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           K D  +T +   + +     E  L  +   +   G  VD      +         +++++
Sbjct: 15  KLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEK 72

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           + +       +    ++L   LF + GL +   T+   +T   VL   K+  P    +  
Sbjct: 73  IYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILT 131

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++     +  L++ +  D ++         ++TGR S      QN+P       +
Sbjct: 132 YRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDPNLQNIPIRLEEGRK 189

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAGIEARVLAWMAGEQW 397
                                    +R   +  E   L+  +D + IE RVLA ++ ++ 
Sbjct: 190 -------------------------IREAFVPREDNWLIFSSDYSQIELRVLAHISNDEH 224

Query: 398 KLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +AF  G+D++ +T  R F V     VT + R   K +   + Y            +  
Sbjct: 225 LKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGIS-----DYGLSQN 279

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +         ++  E++   + +   +  +  +    +        R       ++  
Sbjct: 280 LGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR--RRYLSDINSRNFN 337

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +        +    T   G A    K   +                   R L    +   
Sbjct: 338 LRSF---AERTAINTPIQGSAADILKIAMIE----------------MARRLKEEKL--- 375

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                     QA                   ++L VHDE+V E 
Sbjct: 376 --------------------------QAT------------------MLLQVHDELVFEV 391

Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           P+++      ++  +M    S    +PL  +    K +
Sbjct: 392 PESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 427


>gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 874

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/632 (14%), Positives = 166/632 (26%), Gaps = 149/632 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLARSNGLPSALKAVGEA 115
           +   L    V +   N+              +    +     +         + + +  A
Sbjct: 373 ILACLAERSVALW--NAK-------RYVQAGLRGTAQIFDLELADYLLHPEESRRDMARA 423

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                            F            +   +     L     +  +       + +
Sbjct: 424 ----------------AFAFLGDTTSAEGLSPEAYAVHEALLSARLQPIMETELAAQELM 467

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
               + E  L  +   +   G CV+ A               L +E+ +L      +   
Sbjct: 468 HLYRTVELPLVPVLAAMEQTGVCVNRAALEHERAAATERIDALAREIHTLAGT-EFNISS 526

Query: 236 LEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            ++L   LF + GL            +T    L   +   P   +V   R   ++     
Sbjct: 527 PKQLGEILFEQLGLGDGKVKKTKTGYSTNAETLEGLRDQHPIIDKVLTYR-MWTKLRSTY 585

Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           L+ +   +    GR+  +      + TGR S      QN+P  +                
Sbjct: 586 LDGIGALIRPATGRVHTSFNQ-TVTATGRLSSSDPNLQNIPVRTEEGRA----------- 633

Query: 350 ITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         VR+     EG   L+ AD + IE R+LA M+G+   + AF  G+D+
Sbjct: 634 --------------VRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRQGQDI 679

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T A  F V    VT +QR   K +                    GL+          
Sbjct: 680 HARTAAEVFGVPLDAVTPEQRRRAKAVNF--------------GIVYGLSDFGL------ 719

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                   A +              + +++  V      L +  
Sbjct: 720 ------------------------ARDLGIGRREAGGYIDRYFERYHGVRTF---LDKIV 752

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                NG                             GR      + +      +      
Sbjct: 753 ADAHANGYVTTLY-----------------------GRRRALPALASRNYMQRSF---AE 786

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEF 642
           R            +Q  + D++   M+ A  A         I+L VHDE+V E    +  
Sbjct: 787 RMAMNTP------IQGTAADLIKIAMVRAYDALQAAGVKSRILLQVHDELVLEVTTEETE 840

Query: 643 NASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
             + L    M+     A  +PL  + +  K +
Sbjct: 841 TVTELLRTAMSGAAELA--VPLAVDVHSGKNW 870


>gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C]
          Length = 686

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 165/731 (22%), Positives = 257/731 (35%), Gaps = 142/731 (19%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT----VLKACFNLD-IPIHR 92
                           P  L + + N    I A N  FE      VL        + + +
Sbjct: 4   GKGRRAYIP---GGPKPTDLIDHIANGG-PIAAWNITFEFWIWNMVLAKSEGWPWLQLEQ 59

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY---DRNKPN 149
             C +  AR   LP +L    +AL+ +++K ++GK+LI + C+  +              
Sbjct: 60  CYCDMAKARRFSLPGSLDTAAKALR-TAEKDKKGKQLIGKLCRPVSATKARPEPRWTLYT 118

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
             + +     YC  DV     +   +  ++  E+E W  DQ IN RG  VDV        
Sbjct: 119 APQDYADLYRYCDQDVKSEDHVSALVPDMTPAERETWLADQRINARGVLVDVESLDNALD 178

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
           IV     +   EL ++T G V S   + KL  +L    G  + +L   T    L     L
Sbjct: 179 IVGQTTRRFTMELAAITNGAVGSVSEVAKLTDFL-ATVGCRMHNLKSETVAETLER-DDL 236

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P A ++   R   + + V KL +L   ++SDGRLR    F GA  TGRWS      QNL
Sbjct: 237 NPTARRILEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQNL 295

Query: 330 PRPSRSHEEL----------------------------------------------DQII 343
                  +                                                D   
Sbjct: 296 TSKGPKSKTCNGCGRIVGKSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKDLKH 355

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            +L   I    DP+ ++S C+R   IA+ GKK V  D + IEA VLA +A  +W+++ F 
Sbjct: 356 RNLDLIIDIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRIEVFR 415

Query: 404 TGEDLYVTTYARSFNVAPAQV----------TKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           T   +Y  + ++   V   ++             ++++GKV ELA GY G   A++   +
Sbjct: 416 THGKIYEMSASKISGVPFEEMMAYKEKNKHDHPLRKSLGKVAELASGYGGWIGAWKAFGA 475

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                 +                                           ++    WR  
Sbjct: 476 EEHFEDDDAM----------------------------------------KKAILGWRDA 495

Query: 514 HSRVSELW---NELHQAFEQTIENGK---------AIIARKRRDVPLVYMKKDKNNLILM 561
              + E W           + +              +   K   V  +      + L   
Sbjct: 496 SPEIVEFWGGQYRRDPYTRKWVREYYGLEGAVIMAILNPGKCYAVGDITYAVFDDVLYCR 555

Query: 562 LPSGRSLVYRDVGN-----------NRSYLNTTTR------QLTREYTYGGKLTENIVQA 604
           LPSGR L Y                  +++   T          R  TYGG+L EN+ QA
Sbjct: 556 LPSGRFLQYHQPKLIESDSWKGPEYQVTFMGYNTNSQKGPVGWVRMDTYGGRLAENVTQA 615

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664
            + D+ A  M      GY +V+  HDE++ E P  D  +   +  LMT    W +  P++
Sbjct: 616 AAADVQAYAMKQCENNGYPVVMHTHDELIAEVP-GDFGSVEEMAALMTGREPWREWWPIR 674

Query: 665 AEGYESKRYRK 675
           A G+E  RY+K
Sbjct: 675 AAGWEDDRYQK 685


>gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1]
          Length = 924

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 101/763 (13%), Positives = 213/763 (27%), Gaps = 195/763 (25%)

Query: 4   LFIDFETRSPID------LTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPV--- 52
           + ID ET           + K  +  Y  ++   ++                 H      
Sbjct: 209 VVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENLMK 268

Query: 53  ------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
                 + + L++ LE  D+  +AHN  F+   L+A  ++ + I  W  T+++       
Sbjct: 269 GNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIW-DTMLI-HIIDYR 326

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
               +  + L           ++       +  +   +         W +   Y   D  
Sbjct: 327 GERYSWSKRLAWLET------DMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLADDCD 380

Query: 167 VTREIFKRLEP-----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           VT  + ++  P             +     +Y    I   G  VD      L    + E 
Sbjct: 381 VTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSYEKEI 440

Query: 216 TKLDQELESLT---------------------------------------------YGLV 230
           ++L+ ++                                                  G  
Sbjct: 441 SRLEDKMREFPEGVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSKGGDK 500

Query: 231 SSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            +    ++L   LF   GL      +    +T    L      +     +   R   +  
Sbjct: 501 INFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFVKVLMEFRNG-NHL 559

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
               ++ L   ++ D  +  +    G + TGR S      Q  PR               
Sbjct: 560 YNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRK-------------- 604

Query: 347 PTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                 +   L   +  ++    +   +G  +V  D + +E R+L       + +  + +
Sbjct: 605 -----VNTPTLFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRS 659

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G DL+    + +F VA  +V+KDQR   K ++  + YQ  A+   +     G+       
Sbjct: 660 GADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGI------- 712

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                 CE   K + ++  +VS+   + 
Sbjct: 713 --------------------------------TMSEDECEIFIKKYFKRFPKVSKWIRDT 740

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +  +                              +   +G +    D+ +      +  
Sbjct: 741 KKHVKD--------------------------ISTVKTLTGATRNLPDIDSIDQ---SKA 771

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPD 638
            +  R+           +Q    D     ++   +          I +TVHD IV + P 
Sbjct: 772 NEAERQA------VNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSIVLDCPK 825

Query: 639 TDE-FNASMLYHLMTSNPSWAK------GLPLKAEGYESKRYR 674
            +    A  + H+M +   + +       +P+ +E    + Y 
Sbjct: 826 DEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNYG 868


>gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27]
 gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27]
          Length = 877

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/590 (15%), Positives = 166/590 (28%), Gaps = 125/590 (21%)

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              R     ++A                            L  RF          D    
Sbjct: 404 KTARVHDMSLIAYLLDPTRTN------YGYL--------YLTERFSVPSIANGSVDVECV 449

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
           +  +A     E          E++   E   + E  L +    +   G  +D        
Sbjct: 450 SMVKALLAMNEVACESARRE-ELWSLYE---TIELPLIHTLVVMEKNGIYIDTEKLAETT 505

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
                E T++ +E+  L      +    ++L   LF +  L +   T+   +T   VL  
Sbjct: 506 ARFKEELTQVQEEIYELAG-ETFNINSPKQLGVILFEKMKLPIIKKTKTGYSTDAEVLDM 564

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +  +P   ++   R   ++        L   +N       T      + TGR S     
Sbjct: 565 LRHESPIVEKILAYR-SVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPN 623

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384
            QN+P  +    E                         +R+      G   LV AD + I
Sbjct: 624 LQNIPVRTEKGRE-------------------------IRALFYPGTGYDTLVSADYSQI 658

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++G++  +KAF  G+D++  T A     +  +VT ++R+  K +   + Y   
Sbjct: 659 ELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIYGIS 718

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                    +  L +         +     +   + +   M +   E        G   E
Sbjct: 719 -----DFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQRE 773

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                 R  + R     +   +    T   G A    K                      
Sbjct: 774 LPDINSRNFNRR-----SFAERTAMNTPIQGTAADIIKL--------------------- 807

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                          +N   ++L  +               SR                +
Sbjct: 808 --------------AMNQVEQKLEEQNF------------TSR----------------L 825

Query: 625 VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +L VHDE+V E  +++      L    M S       +PL  + + ++ +
Sbjct: 826 LLQVHDELVLEVVNSELEAIEELLRSTMQSVVE--LQVPLIVDVHHAENW 873


>gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
 gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810]
          Length = 904

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/513 (15%), Positives = 154/513 (30%), Gaps = 128/513 (24%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             EQ L  + +T+++RG  +D      L +  +    +  +E  ++    V +    ++L
Sbjct: 498 ELEQPLQRVLETMHERGIAIDEQALAALREEFEGFVAQAKREAGAIVGEEV-NLASPKQL 556

Query: 240 KTWLFLETGLHLEDL---TETTCQRVLSSNKKL-------TPQAIQVFNNRMRASRSAVL 289
           +  LF    L          +T    L+  ++              +   R   S+    
Sbjct: 557 QVVLFETLALPTTRKISSGHSTDAESLTDLQESLDPESSGHQFLSWLLRFR-EMSKL-TG 614

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
            L  L + +++  R+  T Q   A+ TGR +      QN+P  +                
Sbjct: 615 YLVGLDKVVDAGSRVHTTFQQ-TAAATGRLASTEPNLQNIPVRTAEG------------- 660

Query: 350 ITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +R   +A EG   L+ AD + IE R++A ++ +   ++AF +GEDL
Sbjct: 661 ------------QRIRDAFVAGEGFETLLTADYSQIEMRIMAHLSEDAGLIEAFNSGEDL 708

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    +R F V+P  V    R+  K +   L Y            +  L           
Sbjct: 709 HNFVASRVFGVSPDAVDPAMRSKTKAVSYGLAYG-----LSAFGLSRQL----------- 752

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                                ++  + ++   V +  +   +  
Sbjct: 753 ----------------------------RISRAEATALRDGYFERFGGVRDYLHHTVETA 784

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
             T                                 GR     D+ ++            
Sbjct: 785 RTT--------------------------GYTETILGRRRYLPDLTSDN---RQRRENAE 815

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEF 642
           R          + +Q  + DI+   M+         +    ++L VHDE+V E    +  
Sbjct: 816 RVA------LNSPIQGSAADIIKLAMLRVESRMRAAELSSRMLLQVHDELVVEVAAGELD 869

Query: 643 NASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674
               +    M S   +   +PL       + +R
Sbjct: 870 QVREIVEEGMGSA--YQLSVPLDVGVGIGRTWR 900


>gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
 gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139]
          Length = 910

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 94/668 (14%), Positives = 184/668 (27%), Gaps = 157/668 (23%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D     H++      L      ++  
Sbjct: 367 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 425

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K                          + N    
Sbjct: 426 LTC-DTELASYLLHPDR------RAHKFDDAVRTHL----------NVALGEVEDNSDQA 468

Query: 151 REAW--RLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYC 198
              +    F E  +  V VT  +   +E               E  +     ++   G  
Sbjct: 469 MLDFGEDHFAESMERAVAVT-RLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIA 527

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257
            D+ +   L    D   T+ ++         + +    ++L+  LF +  +     T++ 
Sbjct: 528 ADMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTKSG 586

Query: 258 --TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
             T    L+   +    P    +  +R          ++ L++ +  DGR+  T     A
Sbjct: 587 YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA 644

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
             TGR S      QN+P  +                              +R   +  EG
Sbjct: 645 -VTGRLSSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEG 678

Query: 374 KK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
            + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  
Sbjct: 679 YESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKI 738

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K M                    GL+                                  
Sbjct: 739 KAMNYG--------------LAYGLS------------------------------AYGL 754

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           + +        + +   +  +  +V E    L +  +Q    G                 
Sbjct: 755 SNQLKVSVGEAKELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------- 800

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR     D+ +             R            +Q  + D++  
Sbjct: 801 ------------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKL 839

Query: 613 GMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M+   +          ++L VHDE++ E    +E     +  + M         +PL  
Sbjct: 840 AMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTV 897

Query: 666 EGYESKRY 673
                + +
Sbjct: 898 SIGVGRSW 905


>gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L]
          Length = 857

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 91/658 (13%), Positives = 181/658 (27%), Gaps = 150/658 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             +   A   D   V      H P   + L +A         A     +   L       
Sbjct: 334 PQIRDMAVAVD-GQVVHLSAPHIPAYLERLPQA---------AQIITADGKRLYKVLRTG 383

Query: 88  IPIHRW-ICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
                +    ++ A          AL  +    ++                  E      
Sbjct: 384 KRPAPFPADVVLGAYLLDPTRTSYALSYLATRFEVPL---------------PEGAAPSV 428

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
                   + W    E       +T ++++R+E               +   G+ VD A 
Sbjct: 429 CAEALFAAQVWEK-EEAALQQFGLT-DLYERIEAPLLYT------LSVMETNGFTVDTAR 480

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
              +   +  +   L+ E+         +    ++L   LF    L +   T+   +T  
Sbjct: 481 LQAMKTALTAQAAALENEIYEAAGAA-FNINSPKQLGHMLFEVLHLPVRKKTKTGYSTDA 539

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRW 319
            VL S +   P   ++   R    +     L+ L   +    GR+  +      + TGR 
Sbjct: 540 EVLESLRDAHPAVEKIVRFR-ALKKLISTYLDGLEPLIVPATGRVYTSFHQ-TVTATGRL 597

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVV 378
           S      QN+P  +   ++                         +RS  +  +G   ++ 
Sbjct: 598 SSSDPNLQNIPIRTEQGKK-------------------------IRSLFVPGKGYDYILS 632

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
            D + IE R+LA ++ +   +  F+  +D++  T +  F++   QVT ++R+  K +   
Sbjct: 633 GDYSQIELRLLAHLSQDPTMIDGFKKNQDIHRRTASEVFHIPWEQVTPEERSHAKAVNFG 692

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y               + ++         S    +     +   +     E  I    
Sbjct: 693 IIYGIS-----DFGLARNIGISRAQAKQYIESYFARYSTIHGYMEELVRQAKETGITRTM 747

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                                                      + R +  +  K      
Sbjct: 748 F-----------------------------------------GRMRTLTDINSKNFT--- 763

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                        +    R  +NT  +          KL  N VQ               
Sbjct: 764 --------RRSLAE----RMAMNTPIQG---SAADIIKLAMNAVQ-----------RELE 797

Query: 619 KAG--YDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +      +++ VHDE+V E P  +      +L   M    +    +PL A+ +  K +
Sbjct: 798 QRQLRSRLLVQVHDELVLEVPADELELVKTLLKRTMEEAVT--LSVPLIADLHYGKNW 853


>gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus]
          Length = 574

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 108/713 (15%), Positives = 191/713 (26%), Gaps = 203/713 (28%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L++D ET                   + L   G DD    + D      +   L+E + 
Sbjct: 24  YLYLDTETTG---------------NRIRLVQLG-DDEKTYVIDLYEIHDIT-PLRELIS 66

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAV-GEALKLSS 120
              V  + HN  F+   L       I       T++ +   G    +L  + G  L  + 
Sbjct: 67  EKGV--IGHNLKFDLHYLMNYQ---IEPLATFDTMIASFLLGYERHSLNHLVGNLLGYTL 121

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +                              +Y   DV V RE+F +L  + +
Sbjct: 122 DKSYQLSDWG-------------------APVLSDAQLKYAAKDVDVLRELFPKLRDMLN 162

Query: 181 K---------------------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           +                           E         +   G  VD+    +  + ++ 
Sbjct: 163 ELEGERGEELLKTRTARIFGLKSPVAIVEMAFVKEVAKLERNGLPVDIETLESTLKDIER 222

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270
           +  K  QE               +++   L  +  L+L    +   +T  +VLSS     
Sbjct: 223 KTQKKVQEFLIKFRVDPF---SPKQVGQLLTSKYKLNLPRTQKGNVSTDDKVLSSYA--H 277

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
            + +++     +  + +       ++      RL    + +GA  TGR S      QN+P
Sbjct: 278 VEPVRLLLEIRKLKKLSDKFKE--IKENLKGDRLYPEFKQIGA-VTGRMSSLKPNVQNVP 334

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R                                 R+   A EG   V+AD + IE R+ A
Sbjct: 335 REE-------------------------------RAIFKAPEGNTFVIADFSQIELRIAA 363

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
               E+  ++AF  G+DL+  T +        ++TK++R + K +   L Y   AK   +
Sbjct: 364 EYVNEELMIRAFREGKDLHRYTASLVLGKREEEITKEERQLAKAINFGLIYGISAKGLAE 423

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            A T                                                 E  +  +
Sbjct: 424 YART--------------------------------------GYGVEISEEEAETFRNRF 445

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            +                                   +    K+K         GR    
Sbjct: 446 FKNFKAFKLWH------------------------EKVKKELKEKGVFRGRTLLGRRF-- 479

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI------ 624
                                T         +Q    D+L   ++               
Sbjct: 480 -------------------TATTFNDAVNYPIQGTGADLLKLAVLLFDAEAKKKKLDAKL 520

Query: 625 VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAK-GLPLKAEGYESKRYRK 675
           V  VHDEIV E           +    M          +P++ E   ++R+ K
Sbjct: 521 VNLVHDEIVVECRKEVANQVKEVLEKAMKQAGKIILKKVPVEVESVINERWIK 573


>gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 897

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 101/665 (15%), Positives = 182/665 (27%), Gaps = 134/665 (20%)

Query: 30  VILFAFGFDDHPVELWDCVHDP----------VMPQVLKEALENTDVTIVAHNSYFERTV 79
           ++  AF             H             + + L+  +E   + + AH        
Sbjct: 342 LVGLAFA-GAGRAFYLPLGHRYLGAPAPLAPADVREGLRPLVE-AALPLHAHELKAAAHA 399

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEA---LKLSSQKMEEGKELIARF 133
           L     L         T +++R         AL  V       +L     +  K      
Sbjct: 400 LAR-LGLA-RSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRNPADGAKRGAPGL 457

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
              E                          +      +++        E+ L  +   + 
Sbjct: 458 EGLEVERVAAWAGACAASLPDLAAKLAEGLEAERLSPLYR------EVERPLVPVLVEME 511

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  VD      ++         L+  + +       +     +L   LF+E  L +  
Sbjct: 512 RTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHP-FNVASTRELAQVLFVELELPVVK 570

Query: 254 ---LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRGTLQ 309
                 +T Q VL    +       V  +R   S+     ++ L + ++  DGR+  T  
Sbjct: 571 RLKTGPSTDQDVLEKLAEQHALPRLVLEHR-SLSKLKGTYVDALPQLVDPADGRIHTTFH 629

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
             GA+ TGR S      QN+P  +                          +S  +R   +
Sbjct: 630 QAGAA-TGRLSSSDPNLQNIPVRTE-------------------------LSRRIRQAFV 663

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A  G +L+ AD + IE R+LA  + +   L+AF   ED++  T A +F V P QVT DQR
Sbjct: 664 APAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVPPEQVTPDQR 723

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
            I KV+   + Y            +  L+L         +     +     +  W  E  
Sbjct: 724 RIAKVLNFGIAYG-----LSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEA 778

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                     G A         +    +      L  A E             R  +   
Sbjct: 779 RAKGESRTLFGRA---------RTMPEIGARNPALRNAAE-------------RTAINTP 816

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                 + + + +          V +  +      R                        
Sbjct: 817 IQGTAADIVKIAMI--------RVHDALAQERRAARL----------------------- 845

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
               ++        +VL        E P+ +      L    M         +PL+ +  
Sbjct: 846 ----LLQVHDE---LVL--------EVPERELAPVEALVRREMEGAAR--LKVPLEVQVG 888

Query: 669 ESKRY 673
             + +
Sbjct: 889 HGQTW 893


>gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC
           17982]
          Length = 889

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 97/667 (14%), Positives = 193/667 (28%), Gaps = 155/667 (23%)

Query: 39  DHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
           D+   + D     P   + L E L  T ++++ H++   R  L +     +       T+
Sbjct: 343 DNEALVIDPVELSPQQEEALGEVLA-TALSLIVHDAKGARHALSSR-GWTL-GGVEFDTM 399

Query: 98  VLARSNGL---PSALKA-VGEALKL-------SSQKMEEGKELIARFCKGETHECLYDRN 146
           + A           L+  +   L +        S+ + +  ++ A     +        +
Sbjct: 400 LAAYLAHPDQRSHKLEDVLSRVLGVVIEEEEGDSEALFDLGDMGAGPSAAQVRAGKLAAH 459

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                   R   E       +T             E  L  L   + D G   D ++   
Sbjct: 460 LHPLASTLRSRLEESSEAALLT-----------DMEMPLSVLLGQMEDIGIAADTSVLDG 508

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVL 263
           L+  +        +   +     V +    ++L+  LF   GL     T+T        L
Sbjct: 509 LSDELGKAVDAAREGAWAAAGREV-NLSSPKQLQELLFDHFGLPKTKKTKTGYTTNAEAL 567

Query: 264 SSNKKL--------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           +                   +  +R R        +++L   + SDGR+  T     A+ 
Sbjct: 568 ADLHAKTSDEGGAGHDFLGFLLTHRDRIKLKQ--MVDSLSATVASDGRIHTTFSQ-VAAA 624

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR +      QN+P  S                              +R   +A EG +
Sbjct: 625 TGRLASSDPNLQNIPARSADGMR-------------------------IRGAFVAGEGFE 659

Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+ AD + IE R++A ++G++  ++AF +GEDL+ T  +  F    A+V+ ++R+  K 
Sbjct: 660 SLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKA 719

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
               L Y               L                                     
Sbjct: 720 TSYGLAYG-----LSSYGLAAQLG------------------------------------ 738

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                      ++  + ++  +V +    L                              
Sbjct: 739 ---IPVPEAAALRDRYFERFGKVRDYLEGLVAQAR------------------------- 770

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
             +       GR     D+ ++            R            +Q  + DI+   M
Sbjct: 771 -ADGYTQTMFGRRRYLPDLRSSN---RQRREMAERAALNAP------IQGSAADIVKIAM 820

Query: 615 MNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEG 667
           +N   A         +++ +HDE++ E    +      +    M +       +PL    
Sbjct: 821 INVVDALSEAGLKSRLLVQIHDELLVEVAPGEAAAVEAIVRDKMATPVE--LSVPLDVAV 878

Query: 668 YESKRYR 674
              + ++
Sbjct: 879 GVGRSWQ 885


>gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 931

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 104/652 (15%), Positives = 182/652 (27%), Gaps = 143/652 (21%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-CFNLD-IP 89
             A  F+ +            +   + +      ++ +      +   L     +   I 
Sbjct: 411 GIAVAFNGNE--YLYTGKPEDLAAHMAQ---TGAISRI---IAPDVKALYRSHTSWRAIE 462

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           +HRW    + A                    ++      L                    
Sbjct: 463 VHRWFDLGLAAYLLNP--------------EERDYSWTSLAR-----------RAEEFGI 497

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
             +           D     E       +   E  L  +   +  RG  ++ A       
Sbjct: 498 DAQTPATLALTLAQDAAARLEGVGLSALMEELEMPLIPVLADMELRGIRINRAEFSGFLA 557

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSS 265
            V  E  +L QE+ ++  G   + R  ++L   LF   GL     T+    +T Q VL  
Sbjct: 558 EVQKELDRLTQEVYAVAGGQ-FNIRSSQQLGELLFGTLGLKAGSKTKGGQASTSQAVLEK 616

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                P    +   R +  +     L  L      + R+  T   L A+ TGR S     
Sbjct: 617 LAGKHPVIDTILEYR-KLEKLRSTYLEPLPRLAQENDRIHTTFNQL-ATATGRLSSSQPN 674

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P                             +   +R C  A+ G KLV AD + IE
Sbjct: 675 LQNIPVRGP-------------------------MGQRMRRCFTAAPGNKLVAADYSQIE 709

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA ++ +   +++F   ED++  T    ++V  A VT DQR   K +   L Y  G 
Sbjct: 710 LRVLAHVSADPTLIESFTRNEDIHSRTAGLLYDVTAADVTPDQRRNAKTINFGLIYGMGP 769

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
           +   +      L +              +    + F   ++++  EH       G     
Sbjct: 770 QKLAQE-----LKVTLNEAKEFIERYFSKLSHLKEFYDNVEQSAREHGFVTTLAGR---- 820

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                R+    +    N+L     +                                   
Sbjct: 821 -----RRLLPEIHSDNNQLRSQARR----------------------------------- 840

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                       + +  +   + +         E + Q  +  IL               
Sbjct: 841 --------QAINTVVQGSAADIIKIAMLKAAADETLQQLNAALIL--------------- 877

Query: 626 LTVHDEIVCETPDT-DEFNASMLYHLMTSNPSW--AKGLPLKAEGYESKRYR 674
             VHDE++ E P    E  A  L  +M+S      A  +PL  +      + 
Sbjct: 878 -QVHDELLLEAPQDAAEAAAKRLADIMSSVRPGGAALDVPLAVDYGIGDNWG 928


>gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 866

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 86/501 (17%), Positives = 147/501 (29%), Gaps = 121/501 (24%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           ++  +  L      +  RG  +D      L++ ++ +   + +++       + +    +
Sbjct: 465 MNEIDLPLIPSLIGMERRGIRLDREKMLALSRELERQLNAITEKVYEAAGCEI-NLNSPK 523

Query: 238 KLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTP---QAIQVFNNRMRASRSAVLKL 291
           ++   LF + GL +   T+   +T   VL   +++     +            + A   +
Sbjct: 524 QIGELLFEKLGLPVVKKTKTGYSTDVSVLEQLREICGARCEIPGQLLEYRELQKMASGFV 583

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L+ A   DG +  T + L  + TGR S      QNLP                     
Sbjct: 584 QPLLSAAGGDGLIHSTFESLT-TGTGRLSSRDPNMQNLP--------------------- 621

Query: 352 SDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                       +R C+I S  G     AD + IE RVLA ++G+   ++ F +  D++ 
Sbjct: 622 ----TYSGWGQRIRECLIPSQPGHCFAAADYSQIELRVLAHLSGDPQLIEIFNSDRDIHT 677

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T A  F +    VTK+ R   K +   L Y             + L  +          
Sbjct: 678 ETAAMIFGLPADAVTKELRRSAKTVSFGLIYGMSV-----FGLASRLGTD---------- 722

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                             ++  A+      V E           
Sbjct: 723 -----------------------------RNTAFQIMDAYFAALPGVREYME-------- 745

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                                KK           GR     ++    +  N T     R 
Sbjct: 746 ------------------TSKKKSLEFGYTSTLFGRRRPMDEI----ATGNQTKDHQKRV 783

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTDEFNAS- 645
                      +Q  + DI    M             +VL VHD IVCE P       + 
Sbjct: 784 AINAP------IQGTAADITKIAMNKVAAHFAGRDVAMVLQVHDSIVCECPHDQAEQTAL 837

Query: 646 MLYHLMTSNPSWAKGLPLKAE 666
            L  +M S       +PLK E
Sbjct: 838 ELSQVMESAVH--LSVPLKTE 856


>gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3]
 gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4]
          Length = 892

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 94/668 (14%), Positives = 184/668 (27%), Gaps = 157/668 (23%)

Query: 34  AFGFD--DHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A      D     +D        + +    L + D     H++      L      ++  
Sbjct: 349 AVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALAER-GWEVAG 407

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T + +              A K                          + N    
Sbjct: 408 LTC-DTELASYLLHPDR------RAHKFDDAVRTHL----------NVALGEVEDNSDQA 450

Query: 151 REAW--RLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTINDRGYC 198
              +    F E  +  V VT  +   +E               E  +     ++   G  
Sbjct: 451 MLDFGEDHFAESMERAVAVT-RLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIA 509

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257
            D+ +   L    D   T+ ++         + +    ++L+  LF +  +     T++ 
Sbjct: 510 ADMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRTKSG 568

Query: 258 --TCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
             T    L+   +    P    +  +R          ++ L++ +  DGR+  T     A
Sbjct: 569 YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTVA 626

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
             TGR S      QN+P  +                              +R   +  EG
Sbjct: 627 -VTGRLSSKDPNLQNIPMRTEEGRR-------------------------IREGFVVGEG 660

Query: 374 KK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
            + L+ AD + IE R++A ++G+Q  + AF++G+D +  T +  F VAP  V+  QR+  
Sbjct: 661 YESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKI 720

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K M                    GL+                                  
Sbjct: 721 KAMNYG--------------LAYGLS------------------------------AYGL 736

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           + +        + +   +  +  +V E    L +  +Q    G                 
Sbjct: 737 SNQLKVSVGEAKELMADYFSRFGKVHEY---LEEVVDQARRQGYTETLL----------- 782

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR     D+ +             R            +Q  + D++  
Sbjct: 783 ------------GRRRYLPDLTSTN---RQRRDMAERAALNAP------IQGSAADLIKL 821

Query: 613 GMMNATKAGY------DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKA 665
            M+   +          ++L VHDE++ E    +E     +  + M         +PL  
Sbjct: 822 AMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVPLTV 879

Query: 666 EGYESKRY 673
                + +
Sbjct: 880 SIGVGRSW 887


>gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum]
          Length = 1855

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 104/779 (13%), Positives = 194/779 (24%), Gaps = 179/779 (22%)

Query: 5    FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELWDC--VHDPVMPQV 56
              D E    ID+ +           +I F+        F        D    +   + Q+
Sbjct: 1142 ACDTE-VIDIDVKEQSP---IGHGKIICFSIYCGPDIDFGTGSRIWVDILGSNGDEILQI 1197

Query: 57   LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP------SALK 110
             KE  E+  +  V HN  F+R V     N+D+ +     T+++AR            +L+
Sbjct: 1198 FKEYFEDESIFKVWHNYAFDRHVFYNH-NIDV-VGFGGDTMLMARLWDASRMMRGGYSLE 1255

Query: 111  AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE-----AWRLFGEYCKGDV 165
             + + L L   K            K +          P             + EY   D 
Sbjct: 1256 GLTKDL-LDKHKTNMDDLFGQPKLKSDGTPGKGIILPPLEHLQRSSKHLTKWIEYSSRDA 1314

Query: 166  TVTREIFKRLEPLS-----------------SKEQELWYLDQTINDRGYCVDVALAHTLN 208
             VT  + + L                        +    L   +  RG  VD+     + 
Sbjct: 1315 EVTWMLRENLHKKLMTMEWIGPNSNMWDFYYMMWRPFGQLLTDMERRGMKVDLEHLKGVE 1374

Query: 209  QIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLFLE----------------- 246
             I   + T+ ++                +     +++ +LF                   
Sbjct: 1375 VIAQRDITEHNENFRRWALGYCENVKHMNIDSDAQVQQFLFAPCRNVKTKEEMAREEEFE 1434

Query: 247  -------------------------TGLHLE----DLTETTCQRVLSSNKKLTPQAIQVF 277
                                      GL +         +     L       P   +  
Sbjct: 1435 RENVDGIIEEGAKKAKKKIGFKLAGLGLPVPGVTNSGWPSVDAASLRLLSGKDPANGKYG 1494

Query: 278  NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-----------SRTGRWSGCVFPP 326
                  +      ++ L      +   +   +   A           S     S  + P 
Sbjct: 1495 TAYNHFA------VDRLPPNATEEEIEKAKEEGRQACLAIASLLEVGSIGTLISSFIIPL 1548

Query: 327  QNLPR-----PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
            Q L        +  +   +            +   L+     +R       G  LVVAD 
Sbjct: 1549 QRLADSNHRLHTSVNVNTETGRLSSRRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADY 1608

Query: 382  AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
              +E R+L  +   +  L AF  G D +  T                RA     E+ L +
Sbjct: 1609 GQLELRLLGHITNCKSMLDAFRVGGDFHSRTAMGM--------YPHVRAAVDAGEVLLEW 1660

Query: 442  QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                          G        L    ++        NF     +     + +     +
Sbjct: 1661 D-------------GEGAPPKPLLKDKFASERRKAKTLNFSIAYGKTAHGLSKDWNVTLS 1707

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              +     W +    V        Q   Q                               
Sbjct: 1708 EAQNTLNRWYEDRPEVLLWQRSTIQIAHQ--------------------------KKWTR 1741

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------ 615
               GR  +  D+ +             R             Q  + DI+ + M+      
Sbjct: 1742 TLMGRYRLLPDIDSK---ARGFVGHSERASINTPL------QGGAADIVMKAMLIIEQDA 1792

Query: 616  NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               + GY +++ +HDE++ E P+     A  +   LM +  +    + L  +   +K +
Sbjct: 1793 RLKELGYRLIMQIHDELILEGPEEHAPEARDIVIKLMGNPLNKPLLVDLVVDCRFAKTW 1851


>gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
 gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata]
          Length = 932

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 88/598 (14%), Positives = 171/598 (28%), Gaps = 138/598 (23%)

Query: 95  CTLVLARSNGLPSA---LKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            T + A           L  +        L  +  E G+  I    +         R + 
Sbjct: 449 DTALAAYLALPGQRTFDLADLVLRYLRRDLRPETSETGQLTIDGSDEAAAAAADVVRARA 508

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
               A  L  +  +   T               E  L  +   +   G   D      L 
Sbjct: 509 TLELADALDADLARRGATALLR---------DVELPLVTVLAGMERAGIAADTDHLLDLQ 559

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265
           +    + T++  + + +      +    ++L+  LF E GL      +T   T    L+ 
Sbjct: 560 KHYGAQVTEVAAQAQEIVGRP-FNLSSPKQLQVILFDELGLPKTKKIKTGYTTDADALAW 618

Query: 266 NK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P    +  +R   +R     +++L+  ++  GR+  T   + A+ TGR S   
Sbjct: 619 LSTQADHPLLAVLLRHR-DVARLR-TVVDSLIPMIDDAGRVHTTFNQMIAA-TGRLSSAD 675

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLA 382
              QN+P  +                              +R   +   G + L+ AD +
Sbjct: 676 PNLQNIPVRTAEGR-------------------------QIRRAFVVGAGYESLLTADYS 710

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G++  + AF +GEDL+    A++F +   +V  + R   K M       
Sbjct: 711 QIEMRIMAHLSGDKGLIGAFASGEDLHTFVAAQAFGIPVDEVDPELRRRIKAMSYG---- 766

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        GL+    A                                       
Sbjct: 767 ----------LAYGLSAFGLAGQ------------------------------LGIHPEE 786

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                +A+  +   V +    + +                              +     
Sbjct: 787 AREQMEAYFARFGGVRDFLRGVVERAR--------------------------ADGYTET 820

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619
             GR     D+ ++ +          R            +Q  + DI+   M+   +   
Sbjct: 821 ILGRRRYLPDLTSDNTQRRQM---AERMALNAP------IQGSAADIIKIAMLGVDRKLR 871

Query: 620 ---AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
              A   ++L VHDE+V E    +  +   L    M     +   +PL+      + +
Sbjct: 872 EHGARSRLLLQVHDELVLEIAPGERADVEALVRTEMGGA--YQMSVPLEVSVGSGRTW 927


>gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
 gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama]
          Length = 829

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 81/638 (12%), Positives = 175/638 (27%), Gaps = 185/638 (28%)

Query: 57  LKEALENTDVTIVAH--NS--------YF-ERTVLKACFN-LDIPIHRWICTLVLARSNG 104
           L++   +  +  + H  N          F +  V+    N L+  +         +   G
Sbjct: 333 LQDLFTDRSIKKIFHSDNIPHPDPTNDSFEDLKVIAYPLNTLNTDLEYLF-----SHYLG 387

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
              + +A  + L    +K+                                         
Sbjct: 388 ET-SREAFHKRLNELYEKLC------------------------------------NAMF 410

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                 ++ +++       +           G  +DV    +L+  +  +  +++ ++  
Sbjct: 411 TEKVLTLYYKVDKPLINAIKHM------EKNGISLDVEQLLSLSTQISGKLEEIESKIFD 464

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
           +      S +  ++L   LF E  + ++   ++    T   VL+S      +      + 
Sbjct: 465 IAG-KTFSLQSPKQLGKVLFEEMQIPVQKKLKSGLSSTDNEVLTSLSIQGYEIADYLLSW 523

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLR--GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
               +     ++ L+  +N +       T      + TGR S      QN+PR       
Sbjct: 524 RHYIKLKTAYIDPLLLKVNPNEEKHRISTTYSATLTLTGRLSSSNPNLQNIPR------- 576

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    +R    A EG   + AD + IE R+LA++A  +  
Sbjct: 577 ----------------------EKEIRKIFTAKEGHHFLCADYSQIELRILAYIANVERL 614

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
             A  +G DL+  T ++ F     ++T D R   K +   + Y            +  L 
Sbjct: 615 KCALASGTDLHTLTASQIFKT--DKITPDLRNKAKAVNFGIVYG-----ITNFGLSKQLA 667

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +                                                + +  ++  + 
Sbjct: 668 I---------------------------------------SKEEAASYIQKYFDEYPEIK 688

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
              N +     +                          +  +     R    +++ +N  
Sbjct: 689 IYMNHIRNQARK--------------------------DTYVKTMMNRKCPIQNINSNN- 721

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG---YDIVLTVHDEIVCE 635
              T +    R            +Q  + DI+   M+   +       +V+ VHDE+V E
Sbjct: 722 --RTISLVAERSAINAP------IQGTAADIIRTAMVRMAQEKELLSHMVMQVHDELVFE 773

Query: 636 TPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
                    A  +  +M      + G+PL  E      
Sbjct: 774 LETDVIQQLAKKIKRIMEE----SHGIPLLVELKHGPN 807


>gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505]
 gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505]
          Length = 946

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 102/691 (14%), Positives = 188/691 (27%), Gaps = 163/691 (23%)

Query: 21  ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAHNSYFER 77
           +     D  ++  +   D       D     ++P+    L   L + +   +  ++    
Sbjct: 378 LKPVEGDAALVSLS---DGSRAVAIDLT--EILPEDETVLARLLADVERPKLVADAKGSW 432

Query: 78  TVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEA-LKLSSQKMEE-------- 125
             L     L +         +             ++ + +  L +    + E        
Sbjct: 433 HALS-ARGLTLD-GVIADPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVNEGSAGGDGG 490

Query: 126 ---------GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + L ++     +H     R          L  +    D            
Sbjct: 491 SGESQSAFDLEALTSQEAVPPSHLASARRAAALLPLQAVLDEQMAARDAAGLF------- 543

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
             +  E  +      + D G  VD A+ H     +D        E      G   +    
Sbjct: 544 --TDLEMPVAATLTVMEDAGIAVDDAVLHARQTELDARV-THAAEGAYAAAGRELNLSSP 600

Query: 237 EKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKL 291
           ++L+  LF E  +     T+T   T    L+        P    +  +R          +
Sbjct: 601 KQLQAVLFDELKMPKTRKTKTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT--V 658

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L +A+ +DGR+  T Q   A+ TGR S      QN+P                     
Sbjct: 659 EGLRKAIQADGRIHTTFQQTIAA-TGRLSSTDPNLQNIPARHEEGMR------------- 704

Query: 352 SDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                       +R      EG + L+ AD + IE R++A ++ +Q  ++AF +GEDL+ 
Sbjct: 705 ------------IREAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIEAFRSGEDLHR 752

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
              A    +    VT  QR+  K M   L Y                             
Sbjct: 753 YVAALVHGIEVEDVTAQQRSHVKAMSYGLAYG-----LSTFGLARQ-------------- 793

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                              ++ A+  +  +V +    L    EQ
Sbjct: 794 -------------------------LGIDNAEAADLRNAYFARFGKVHDY---LESVVEQ 825

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
              +G                             GR     D+ ++            R 
Sbjct: 826 ARRDGYTETM-----------------------FGRRRYLPDLTSDN---RQRREMAERA 859

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAG------YDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DI+ + M++   A         I+L +HDE++ E    +    
Sbjct: 860 ALNAP------IQGSAADIVKKAMIDVDSALREQALTSRILLQIHDELLIEVAPGEAEAV 913

Query: 645 S-MLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             +L   M         +PL       + +R
Sbjct: 914 ENLLKEQMGGAAE--LSVPLDVAVGRGRTWR 942


>gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
 gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112]
          Length = 861

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/600 (13%), Positives = 179/600 (29%), Gaps = 120/600 (20%)

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
           K   NL I    +   L+ + + G   + K    A       +EE  + I       +  
Sbjct: 371 KEWKNLGINFKNYFDILLASFTLGTDKSQKLETMAFDKLGLSIEEIDKKILNKFDATSFI 430

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
                       A     E     +    ++   LE      +E   +   +  +G  ++
Sbjct: 431 EYRKNRLITMTYAIFKLKEVFMDLLEKENQLDIYLEE-----KEFTDVLIYMEKQGIAIN 485

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---T 257
                  N  ++ +   ++ ++   +     +    ++L   LF   G+      +   +
Sbjct: 486 QNYFEKYNLELEKKIKDIENKIYIESG-ESFNISSPKQLGEVLFETMGIEGVKKNKRGYS 544

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   +    +  ++        +     +  L++  + +GR+  T    G + TG
Sbjct: 545 TDAEVLELLRDRGIKIAELLLEYRELVKLKSTYVEPLLKL-SINGRIHTTYNQTG-TATG 602

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P  +    +                         +R   IAS+G KLV
Sbjct: 603 RLSSSNPNLQNIPTRTYEGTK-------------------------IREGFIASKGMKLV 637

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
             D + IE RVLA ++ ++  + A++   DL+  T  + F +   +              
Sbjct: 638 SFDYSQIELRVLAEISKDENLINAYKHNLDLHELTARKIFMLKDDE-------------- 683

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                                        K +          NF     +     + E  
Sbjct: 684 -----------------------------KVSKTQRNIAKVINFSVLYGKTPFGLSKELK 714

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
              +  +     + +++ +V  L +++ +  ++                          +
Sbjct: 715 ITVSDAKLYINTYFKEYPKVRILLDDIIEKAKK--------------------------D 748

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
             +    G      D+ ++         Q  R           ++Q  + +I+ + M   
Sbjct: 749 GYVETKFGTRRYVYDINSSNI---NIKEQAKRMA------VNTVIQGTAANIIKKVMKEI 799

Query: 618 TKAGY----DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                     ++L VHDE++ E  +        +  +M +   +   + LK  G E   +
Sbjct: 800 YDKLCNDNVKMLLQVHDELIFEVRED-INIFEEIRDIMQNTIVF-DDVVLKVNGSEGDNW 857


>gi|297518776|ref|ZP_06937162.1| DNA polymerase I [Escherichia coli OP50]
          Length = 665

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 105/339 (30%), Gaps = 55/339 (16%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  +++            ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIS----------ANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKA 111
           ++LK  LE+     V  N  ++R +L     +++       T++ +           + +
Sbjct: 403 ELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + E              L  +    E            ++ A    G Y   D  VT ++
Sbjct: 461 LAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL 508

Query: 172 FKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             ++ P   K              L  +   I   G  +D  + H  ++ + +   +L++
Sbjct: 509 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 568

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQV 276
           +   +      +    ++L+T LF + G+     T     +T + VL       P    +
Sbjct: 569 KAHEIAG-EEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 627

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGAS 314
              R   ++      + L   +N   GR+  +      +
Sbjct: 628 LEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTA 665


>gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
 gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto]
          Length = 875

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 102/674 (15%), Positives = 204/674 (30%), Gaps = 141/674 (20%)

Query: 17  TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64
            +  +  Y E   ++LF+       +      V   D             +V +E  E+ 
Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCREMFESK 381

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  + +N+   RT+L+    +D    +     + A           V +  ++SS   E
Sbjct: 382 EIKKITYNAKNPRTILRK-LGIDFNGIK-FDINLAAYLIDP------VRKEYEISSLASE 433

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
              + I R  +    + +                E    D  +   ++         EQ 
Sbjct: 434 YLFKNINREDEFLKIKEVNI------MPNLYKVLEEKIKDQDMEELLY-------KVEQP 480

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L      +   G+ VD  +   L +    E      E+ S++     +    ++L   LF
Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EKFNINSPKQLGKILF 539

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +  L +   T+   +T   VL   +   P   ++   R   ++     +  L  A++ D
Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G++         + TGR S      QN+P       E                       
Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634

Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V 
Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +VT   R+  K +   + Y  G  +  +      LN+         ++  E + + + 
Sbjct: 693 IEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ-----DLNITRKEAKQYIDAYLERYPNVKL 747

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +   + E   E       +     R  K  +  +  V        +    +   G A   
Sbjct: 748 YLENIVEEAVEKGYVSTILNR--RRYIKEVKSSNKIVKA---AGERLAMNSPIQGSAADI 802

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            K   V +                 R L   +  ++                        
Sbjct: 803 IKLAMVNVH----------------RKLKEDNFKSS------------------------ 822

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPDTDEFNASMLYHLMTSNPSWAK 659
                   I+    +        ++L VH DE+        E   +++   M        
Sbjct: 823 --------II----LQVHDE---LILNVHKDEL--------ERIKALVKKEMEQVLELKV 859

Query: 660 GLPLKAEGYESKRY 673
           G  L  +      +
Sbjct: 860 G--LDVDINIGNNW 871


>gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
 gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R]
          Length = 882

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/664 (12%), Positives = 186/664 (28%), Gaps = 154/664 (23%)

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALEN----TDVTIVAHNSY-----FERTVLKACFNL 86
               +        H           LE+     +   +  +       ++   L      
Sbjct: 343 CTSSNKSIYIPLFHIG--------LLESNIDLEECQKLFFSLKGKLYTYDLKELLK-LGF 393

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                     +++A                         G+  +    + E       + 
Sbjct: 394 SFQ-KPVYD-MMIAYHLVSSQT----------KEDYTSIGQYYLKTIAEDEKIVFAKQKI 441

Query: 147 KPNHREAWRLF------GEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYC 198
           +    +++  F        Y   D  + +++ ++         E  L  +  ++  +G  
Sbjct: 442 ETLSIDSYGNFLLKRSQILYSCLDS-LEKDLKEKELENVLWETELPLIPVLASMEKQGIK 500

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           +D       +  ++ +   L++E+         +    ++L   LFL+  L     T+  
Sbjct: 501 IDRKYFQKYSLELNEKLVLLEKEIWKEAG-EEFNINSPKQLGEILFLKLNLPTGKKTKTG 559

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL +      Q         + ++     ++ + + +    R+      +G + 
Sbjct: 560 FSTDVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFGDRIHTCYHQIG-TV 618

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  +                              +R   IA +G K
Sbjct: 619 TGRLSSSDPNLQNIPVKTEEGIR-------------------------IRQGFIARDGWK 653

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+  D + +E RVLA ++ ++  +KA++  +DL+  T  + F                  
Sbjct: 654 LLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIF------------------ 695

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                                          + +          NF     +     A E
Sbjct: 696 -------------------------ELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKE 730

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                       K + +++ RV++   E+ +  EQ                         
Sbjct: 731 LGISVKDAAEYIKRYFEQYPRVAQFETEIIEFAEQ------------------------- 765

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
            +  +    GR  +   + +    +     Q  R           +VQ  + +IL + M+
Sbjct: 766 -HGYVETYFGRKRIIDGIHSKNRMVKN---QAERMA------VNTVVQGTAAEILKKVMI 815

Query: 616 NAT-----KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYE 669
                   K    ++L VHDE++ E  +         L + M +     + + L+     
Sbjct: 816 KIYSWLLGKTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQL-EEVELEVNTNI 874

Query: 670 SKRY 673
              +
Sbjct: 875 GNTW 878


>gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7]
 gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7]
          Length = 2016

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/692 (12%), Positives = 182/692 (26%), Gaps = 160/692 (23%)

Query: 1    MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLK 58
            +    +D ET         G+  + E+  + L     +++PV ++D  +     +   L+
Sbjct: 1464 IKYCGLDIETT--------GLEVFDEN--IRLIQIAVENYPVIIYDMFNINKKDILDGLR 1513

Query: 59   EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            + LEN ++  +  N  F+   L      +  I     T + ++       +         
Sbjct: 1514 KVLENKNIIKIIQNGKFDAKFLLHN---NFKIENIFDTYIASKLLDKNKNM------YGF 1564

Query: 119  SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV---------TVTR 169
                + E              +        +     +LF  Y   D              
Sbjct: 1565 KLNNIVE-----KYLNVILDKQQQNSVWNNSLLNNNQLF--YAARDSSCLLKLYKKLKEE 1617

Query: 170  EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
               + L  ++  E +       +   G  VD+         +  E       L+      
Sbjct: 1618 IKKENLHIVNDIENKCILPICDMELNGIKVDLENLQKSTNEILNELNIEKDNLKKKLKDE 1677

Query: 230  VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              +    +++   L       + +            N     + I + N R    +    
Sbjct: 1678 NINVNSQQQVLKALQKNNVRDISNKLIENTSDSNLKNFLNHEEIISLRNYRR-LYKLYSA 1736

Query: 290  KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
                L   +N+      T      + +GR+S      Q +PR                  
Sbjct: 1737 FYLKLPLHINTKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPR------------------ 1778

Query: 350  ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                          +R   I ++    ++AD   IE ++ A +  ++  LKA+    DL+
Sbjct: 1779 -----------QKNIREIFIPNDNNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLH 1827

Query: 410  VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              T +         + K+ R I K +   L Y       +  A+T               
Sbjct: 1828 TLTASIITKKNIPDINKEDRHIAKAINFGLIYGMNYVNLKNYANTY-------------- 1873

Query: 470  SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                             C     ++ + +  + +         +
Sbjct: 1874 ------------------------YGLNMSLDQCLYFYNSFFEHYKGIYKWH----NQVK 1905

Query: 530  QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
            Q      + ++ ++   P                                          
Sbjct: 1906 QKRALQYSTLSNRKVIFPYFSFT------------------------------------- 1928

Query: 590  EYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-DEFNA 644
                  K     VQ    DIL   +++           I+L VHDEI+ E      E   
Sbjct: 1929 ------KALNYPVQGTCADILKLALVDLYDNLKDINGKIILCVHDEIIIEVNKKFQEEAL 1982

Query: 645  SMLYHLMTSNPSWAKGLPLKAEGYE--SKRYR 674
             +L   M ++ S+     +K E     ++ + 
Sbjct: 1983 KILVQSMENSASYFLK-KVKCEVSVKIAENWG 2013


>gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1]
 gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 516

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 126/454 (27%), Positives = 188/454 (41%), Gaps = 80/454 (17%)

Query: 258 TCQRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           T   V           A Q    R  A++++  KL  +V+    DGR RG     GA  T
Sbjct: 107 TKAAVRQMLAGDIEGAARQAVEIRAEAAKASTAKLTAMVKCACDDGRARGLHLVYGAG-T 165

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQII---THLPTSITSDPDPLQIISDCVRSCVIASEG 373
           GRW+G +   QNLPR S    +L   +     +         PL +IS  +R C+I +EG
Sbjct: 166 GRWAGRLIQLQNLPRGSVKKADLAIPLIIDGDIDLVSMLFGPPLDVISSNLRGCLIPAEG 225

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS------------FNVAP 421
              + +D + IE R+ AW+A E+WK++AF   +                      +    
Sbjct: 226 CDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLKVPYAHPL 285

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            + ++++   GKV ELALG+ GG  AFQ MA+  G+                        
Sbjct: 286 NENSQERTPYGKVPELALGFGGGVGAFQSMAAIYGM------------------------ 321

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 +++K AWR+ H RV  LW  +  A    I N   +++ 
Sbjct: 322 ---------------KVTDEEADQIKVAWREAHPRVVALWRNMEDAAFNAISNPGRVVST 366

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSY------------------LN 581
               +  V        L ++LPSGR L Y    +   R                    +N
Sbjct: 367 AGGRIKYV---VKGGFLWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDTITFMSVN 423

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
           + TR+  R  TYGG L EN +QA++RD+LA  ++    AGY +V+ VHDE + E      
Sbjct: 424 SITRKWERCTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHDEALAEIRKG-V 482

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +      +M   P+WA GLP+ A G+   RYRK
Sbjct: 483 GSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 516


>gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 576

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 115/717 (16%), Positives = 209/717 (29%), Gaps = 209/717 (29%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            LFID ET                   + LF  G D+  + + D    P    VLKE + 
Sbjct: 24  YLFIDTETTGD---------------RIRLFQVG-DEERIFVIDLFDLPEAVDVLKELIA 67

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSS 120
              V  V HN  F+   +   + L I  +    T++ +   G    +L  V E L   + 
Sbjct: 68  KKGV--VGHNLKFDLKFM---YPLGIVPYATFDTMIGSFLLGYERHSLSHVAERLLGYTM 122

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +                          +   EY   DV V RE+F ++    +
Sbjct: 123 DKSLQLSDWSRTALT-------------------KQQIEYAATDVLVVRELFYKMREKLN 163

Query: 181 ----------------------------KEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                                        E         +   G  VD      L++  +
Sbjct: 164 ALGETDRGEELLRTRTARVFGLTNPATVVEMAFVQEIARLEMNGIPVDEEEIERLSREYE 223

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKL 269
            +     + +              +++ ++L    GL L +  +   +T  + L+    +
Sbjct: 224 KKLQ---KLIMDFYIKYRIDPMSPKQIGSFLTGRLGLELPETQKGNISTDDKTLAEFSHV 280

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
             +   +   R    + A+ KL  L   +  +GR+    + +GA  TGR S      QN+
Sbjct: 281 -KEVRDILEIRRI--KKALDKLKELKGFIR-NGRVYPEFRQIGA-VTGRMSSSNPNVQNI 335

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           PR                                +RS   ASEG   V+AD + IE R+ 
Sbjct: 336 PRD-------------------------------MRSLFRASEGNLFVIADFSQIELRIA 364

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A    ++  L+AF  G DL+  T +        ++TK++R + K M              
Sbjct: 365 AEYVQDENMLRAFREGRDLHRYTASLVLEKPEEEITKEERQLAKAMNF------------ 412

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                 G++    +                         +   +        A +  ++ 
Sbjct: 413 --GLIYGISARGLS------------------------EYARSSYGVELEIEAADVFRQK 446

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           + +      +  + + +  ++  E     +  +                           
Sbjct: 447 FFKFFHAFKDWHDSVKRELKENKEVVGTTLLGRPY------------------------- 481

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG--MMNATKAG----YD 623
                              R  T+        +Q    D+L     M +           
Sbjct: 482 -------------------RASTFT-DAVNYPIQGTGADLLKLAVLMFDVETRKKGLSAR 521

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYRK 675
           +V  VHDEIV E P   +  A  +   +      A       +P++ E    +R+ K
Sbjct: 522 VVNLVHDEIVVECP---QELAEQIKESLEHAMVHAGSIVLKHVPVEVESVVDERWVK 575


>gi|332981757|ref|YP_004463198.1| DNA polymerase I [Mahella australiensis 50-1 BON]
 gi|332699435|gb|AEE96376.1| DNA polymerase I [Mahella australiensis 50-1 BON]
          Length = 850

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/649 (12%), Positives = 178/649 (27%), Gaps = 144/649 (22%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRW 93
               +  +++++      +P ++   L N  V    +++   R ++     ++++     
Sbjct: 332 LSLSEDELKVYNISVKQSVPDIVAAVLSNPKVHKHVYDAK--RLIVSMNKSHINVKGID- 388

Query: 94  ICTLVLARSNGLPSALKA----VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
              ++ A       +       V + L++          L              + N   
Sbjct: 389 FDAMIAAYLLDPSQSNYDIKRLVKQYLEIDDDAASHAGYLWRLMNIMLPQIKENEMNALF 448

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           +                                  L  +   +   G+ VDV +   L  
Sbjct: 449 YDIE-----------------------------MPLTRVLADMEINGFTVDVQMLKELAD 479

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSN 266
             +     L +E+ +L      +    ++L   LF +  L +   T+   +T   VL   
Sbjct: 480 DFERMIDGLTKEIYALAG-EEFNINSPKQLGAILFEKLKLPVGKKTKTGYSTDIEVLKQL 538

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           +       ++ + R   ++     ++ L+   +       +      + TGR S      
Sbjct: 539 QLQHDIVPKIIDYRQ-LTKLKSTYIDGLMNMADPITHKIHSKFNQTVTVTGRISSTEPNL 597

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIE 385
           QN+P  +                          +   +R   + S     L+ AD + IE
Sbjct: 598 QNIPVKTE-------------------------LGHQIRKAFVPSSSDYLLLDADYSQIE 632

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            RVLA M+ +Q  + AF  G+D++  T +  F +   QVT   R+  K +   + Y    
Sbjct: 633 LRVLAHMSQDQNMIDAFLKGQDIHARTASEVFGIPLEQVTPLMRSRAKAVNFGIVYGIS- 691

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                      + ++              +     F     +   +H            R
Sbjct: 692 ----DFGLARNIGISRSEAKQYIEQYFARYNGVRRFMDETIQFAKKHGYVTTMFKR--RR 745

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                   +  V        +A   T   G A    K+  V +                 
Sbjct: 746 YLPELASSNRTVRSFG---ERAAMNTPIQGTAADIIKKAMVDIY---------------- 786

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                     N    N    +L                          ++        ++
Sbjct: 787 ----------NALKENEYRSKL--------------------------ILQVHDE---LI 807

Query: 626 LTVH-DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + VH DE+        +    ++   M         +PL A+ +  + +
Sbjct: 808 IEVHRDEV--------DEIRDLVKDKMEGVVK--MDVPLVADIHVGENW 846


>gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 936

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/620 (14%), Positives = 168/620 (27%), Gaps = 147/620 (23%)

Query: 82  ACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGE 137
                 +        ++ A          +A   VG  L L          L     +GE
Sbjct: 433 RAQGWTL-GEECFDVMLAAYLVAPDQRSYAAADLVGRVLGLDVGGGAPDDALFDLAAEGE 491

Query: 138 T--HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTIN 193
                              R           +   +    E       E     +   + 
Sbjct: 492 GPGVAGARLGRLCAALHPLR---------AELGEALRGSGEAGLLSDVEMPTAAVLAGME 542

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  VD A    L+  +  +  +  +   ++    V +    ++L+  LF   GL    
Sbjct: 543 RVGIGVDSARLGALSDELGGDVERAREGALAVLGREV-NLSSPKQLQEVLFEHFGLPRTR 601

Query: 254 LTET---TCQRVLSSNKKL--------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            T+T   T    L                    +  +R R        +++L+ ++  DG
Sbjct: 602 RTKTGYTTNAEALQDLYAKTAERGGDGHEFLGHLLAHRDRIKLKQ--MVDSLIASVADDG 659

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           R+  T     A+ TGR +      QN+P  S                             
Sbjct: 660 RIHTTFSQ-VAAATGRLASADPNLQNIPARSADGMR------------------------ 694

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   +A  G + L+ AD + IE R++A ++ ++  + AF +GEDL+ T  +  F    
Sbjct: 695 -IRGGFVAGPGFEALMSADYSQIEMRIMAHLSQDEGLIGAFNSGEDLHRTMASMVFGTPV 753

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A+VT  QR+  K     L Y        K   +  L                        
Sbjct: 754 AEVTAQQRSRIKATSYGLAYG-----LSKYGLSKQLG----------------------- 785

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                   +++ + ++   V +    L              +  
Sbjct: 786 ----------------IPVPEAAALRERYFERFGGVRDYLESLVDQARS--RGYTETMYH 827

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                                   R     D+G++            R            
Sbjct: 828 ------------------------RRRYLPDLGSDN---RQRREMAERAALNAP------ 854

Query: 602 VQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSN 654
           +Q  + DI+   M+       +AG    +++ +HDE++ E    +       +   M   
Sbjct: 855 IQGSAADIMKLAMIGVVGALGRAGLRSRVLVQIHDELLVEVAPGERERVEEAVRQEMAGV 914

Query: 655 PSWAKGLPLKAEGYESKRYR 674
            S    +PL         ++
Sbjct: 915 AS--LRVPLDVSVGVGPSWQ 932


>gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 955

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/672 (14%), Positives = 191/672 (28%), Gaps = 154/672 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A         +        +       L++     + H    E   L    +LD+ +  
Sbjct: 404 IAVAT-ATSAAIVPLPITDTLRAQFARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 460

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T +            ++ +A +            I      +  +   D +     E
Sbjct: 461 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 512

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202
                      D+ + R +   L P+  + ++ W           +   +   G  VD  
Sbjct: 513 DPNELR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 569

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258
              ++      E  +  QE+     G   + +  ++L+  LF + GL     T++    T
Sbjct: 570 RLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 628

Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310
               L          ++       +  +R   ++   + + TL++A N SD R+  T + 
Sbjct: 629 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 686

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             A+ TGR S      QN+P  + +  E                         +R   + 
Sbjct: 687 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 720

Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            EG + L+  D + +E R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR
Sbjct: 721 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 780

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           +  K M   L Y                                                
Sbjct: 781 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 799

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +        E +K  +     +V +    L     +                   
Sbjct: 800 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 837

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR   +  + +          +               +Q  + DI
Sbjct: 838 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 881

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662
           +   M+ A            I+L +HDE+V E    +    + L    M      A  +P
Sbjct: 882 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 939

Query: 663 LKAEGYESKRYR 674
           L         ++
Sbjct: 940 LDVSCGIGSDWQ 951


>gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 950

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 96/672 (14%), Positives = 192/672 (28%), Gaps = 154/672 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A         +        +   L   L++     + H    E   L    +LD+ +  
Sbjct: 399 IAVAT-ATSAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 455

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T +            ++ +A +            I      +  +   D +     E
Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 507

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202
                      D+ + R +   L P+  + ++ W           +   +   G  VD  
Sbjct: 508 DPNEHR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 564

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258
              ++      E  +  QE+     G   + +  ++L+  LF + GL     T++    T
Sbjct: 565 RLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 623

Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310
               L          ++       +  +R   ++   + + TL++A N SD R+  T + 
Sbjct: 624 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 681

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             A+ TGR S      QN+P  + +  E                         +R   + 
Sbjct: 682 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 715

Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            EG + L+  D + +E R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR
Sbjct: 716 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 775

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           +  K M   L Y                                                
Sbjct: 776 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 794

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +        E +K  +     +V +    L     +                   
Sbjct: 795 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 832

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR   +  + +          +               +Q  + DI
Sbjct: 833 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 876

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662
           +   M+ A            I+L +HDE+V E    +    + L    M      A  +P
Sbjct: 877 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 934

Query: 663 LKAEGYESKRYR 674
           L         ++
Sbjct: 935 LDVSCGIGSDWQ 946


>gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A]
 gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8]
          Length = 955

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 96/672 (14%), Positives = 192/672 (28%), Gaps = 154/672 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A         +        +   L   L++     + H    E   L    +LD+ +  
Sbjct: 404 IAVAT-ATSAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 460

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T +            ++ +A +            I      +  +   D +     E
Sbjct: 461 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 512

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202
                      D+ + R +   L P+  + ++ W           +   +   G  VD  
Sbjct: 513 DPNEHR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 569

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258
              ++      E  +  QE+     G   + +  ++L+  LF + GL     T++    T
Sbjct: 570 RLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 628

Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310
               L          ++       +  +R   ++   + + TL++A N SD R+  T + 
Sbjct: 629 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 686

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             A+ TGR S      QN+P  + +  E                         +R   + 
Sbjct: 687 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 720

Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            EG + L+  D + +E R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR
Sbjct: 721 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 780

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           +  K M   L Y                                                
Sbjct: 781 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 799

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +        E +K  +     +V +    L     +                   
Sbjct: 800 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 837

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR   +  + +          +               +Q  + DI
Sbjct: 838 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 881

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662
           +   M+ A            I+L +HDE+V E    +    + L    M      A  +P
Sbjct: 882 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 939

Query: 663 LKAEGYESKRYR 674
           L         ++
Sbjct: 940 LDVSCGIGSDWQ 951


>gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA]
          Length = 950

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 96/672 (14%), Positives = 192/672 (28%), Gaps = 154/672 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A         +        +   L   L++     + H    E   L    +LD+ +  
Sbjct: 399 IAVAT-ATSAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 455

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T +            ++ +A +            I      +  +   D +     E
Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 507

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202
                      D+ + R +   L P+  + ++ W           +   +   G  VD  
Sbjct: 508 DPNEHR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 564

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258
              ++      E  +  QE+     G   + +  ++L+  LF + GL     T++    T
Sbjct: 565 RLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 623

Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310
               L          ++       +  +R   ++   + + TL++A N SD R+  T + 
Sbjct: 624 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 681

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             A+ TGR S      QN+P  + +  E                         +R   + 
Sbjct: 682 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 715

Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            EG + L+  D + +E R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR
Sbjct: 716 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 775

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           +  K M   L Y                                                
Sbjct: 776 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 794

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +        E +K  +     +V +    L     +                   
Sbjct: 795 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 832

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR   +  + +          +               +Q  + DI
Sbjct: 833 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 876

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662
           +   M+ A            I+L +HDE+V E    +    + L    M      A  +P
Sbjct: 877 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 934

Query: 663 LKAEGYESKRYR 674
           L         ++
Sbjct: 935 LDVSCGIGSDWQ 946


>gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
 gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F]
          Length = 950

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 96/672 (14%), Positives = 192/672 (28%), Gaps = 154/672 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A         +        +   L   L++     + H    E   L    +LD+ +  
Sbjct: 399 IAVAT-ATSAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 455

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T +            ++ +A +            I      +  +   D +     E
Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 507

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202
                      D+ + R +   L P+  + ++ W           +   +   G  VD  
Sbjct: 508 DPNEHR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 564

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258
              ++      E  +  QE+     G   + +  ++L+  LF + GL     T++    T
Sbjct: 565 RLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 623

Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310
               L          ++       +  +R   ++   + + TL++A N SD R+  T + 
Sbjct: 624 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 681

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             A+ TGR S      QN+P  + +  E                         +R   + 
Sbjct: 682 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 715

Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            EG + L+  D + +E R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR
Sbjct: 716 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 775

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           +  K M   L Y                                                
Sbjct: 776 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 794

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +        E +K  +     +V +    L     +                   
Sbjct: 795 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 832

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR   +  + +          +               +Q  + DI
Sbjct: 833 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 876

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662
           +   M+ A            I+L +HDE+V E    +    + L    M      A  +P
Sbjct: 877 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 934

Query: 663 LKAEGYESKRYR 674
           L         ++
Sbjct: 935 LDVSCGIGSDWQ 946


>gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 882

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/656 (12%), Positives = 182/656 (27%), Gaps = 138/656 (21%)

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALEN----TDVTIVAHNSY-----FERTVLKACFNL 86
               +        H           LE+     +   +  +       ++   L      
Sbjct: 343 CTSSNKSIYIPLFHIG--------LLESNIDLEECQKLFFSLKGKLYTYDLKELLK-LGF 393

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                     +++A         +       +    ++   E        +  E L   +
Sbjct: 394 SFQ-KPVYD-MMIAYHLVSSQTKED---YTSIGQYYLKTIAEDEKTVFAKQKIETLSIDS 448

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
             N           C   +    +  +    L   E  L  +  ++  +G  +D      
Sbjct: 449 YGNFLLKRSQILYSCLEPLEKDLKEKELENVLWETELPLIPVLASMEKQGIKIDRKYFQK 508

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
            +  ++ +   L++E+         +    ++L   LFL+  L     T+   +T   VL
Sbjct: 509 YSLELNEKLVLLEKEIWKEAG-EEFNINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVL 567

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
            +      Q         + ++     ++ + + +  D R+      +G + TGR S   
Sbjct: 568 ENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFDDRIHTCYHQIG-TVTGRLSSSD 626

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  +                              +R   IA +G KL+  D + 
Sbjct: 627 PNLQNIPVKTEEGIR-------------------------IRQGFIARDGWKLLSIDYSQ 661

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E RVLA ++ ++  +KA++  +DL+  T  + F                          
Sbjct: 662 VELRVLAALSKDENLVKAYQEKQDLHSVTAKKIF-------------------------- 695

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                                  + +          NF     +     A E        
Sbjct: 696 -----------------ELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDA 738

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
               K +  ++ RV++   E+ +  EQ                          +  +   
Sbjct: 739 AEYIKRYFAQYPRVAQFETEIIEFAEQ--------------------------HGYVETY 772

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618
            GR  +   + +    +     Q  R           +VQ  + +IL + M+        
Sbjct: 773 FGRKRIIDGIHSKNRMVKN---QAERMA------VNTVVQGTAAEILKKVMIKIYSWLLG 823

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           K    ++L VHDE++ E  +         L + M +     + + L+        +
Sbjct: 824 KTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQL-EEVELEVNTNIGNTW 878


>gi|296111925|ref|YP_003622307.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154]
 gi|295833457|gb|ADG41338.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154]
          Length = 895

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 85/629 (13%), Positives = 174/629 (27%), Gaps = 122/629 (19%)

Query: 56  VLKEALENTDVTIVAHNSY--FERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LK 110
            L+  +EN  +     N    F   VL     + +        L+ A           L 
Sbjct: 374 ELRSVIENAAIIKNVFNVKAQF---VLFKRLGMTLRGVE-FDFLLAAYLLDTTDNDNELS 429

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + +         E+     A++   E    +            +L     +       +
Sbjct: 430 TLAQRFDFYVTPDEDIYGKGAKYAVPEETSRVLVHLAHKADVLMQL-----EQPAFAALQ 484

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             ++    +  E  L ++   +  RG  +D      +   ++     + +E   +  G V
Sbjct: 485 DHEQTHLYTEIELPLAHVLADMEYRGIKIDQTRLREIGTDLEERIDTI-KEAIFIEAGEV 543

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +    ++L   LF + GL +   T+   +T   VL       P    +   R   ++  
Sbjct: 544 FNINSPKQLGILLFEKMGLPVIKKTKTGYSTAVDVLEKLAPQAPIVDHILQYRQ-LAKLK 602

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              ++ L+  ++       T      ++TGR S      QN+P  + +  +         
Sbjct: 603 STYVDGLLSVVHEKDSKIHTRFLQTLTQTGRLSSIDPNLQNIPMRTEAGRK--------- 653

Query: 348 TSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                           +R+  + S    ++  AD + IE RVLA M G++   +AF  GE
Sbjct: 654 ----------------IRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKNMQQAFLNGE 697

Query: 407 DLYVTTYARSFNVAPAQV-TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           D++  T    F +          R   K +   + Y               L ++     
Sbjct: 698 DIHAETARAVFGLDDNVPVDPLMRRTAKAVNFGIVYGIS-----DFGLANNLGISRAEAK 752

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
               +  +E+     +   ++    E    +        R       K+  +        
Sbjct: 753 RFIETYFQEFPKIHEWMTQIKAKAHEQGFIETIAKR--RRYLPEIGSKNFNLRSF---AE 807

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +    +   G A    K   + +                                     
Sbjct: 808 RTAMNSPIQGSAADIIKIAMIKV------------------------------------- 830

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                      L EN +QA         ++                ++ E P  +    S
Sbjct: 831 --------ADALQENGMQA-------RMLLQVHDE-----------LIFEAPSDEIAELS 864

Query: 646 MLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            L   +M S       +P+  E +    +
Sbjct: 865 ELVTRVMDSAV--VLDVPMLVESHSGNTW 891


>gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563]
          Length = 884

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/656 (12%), Positives = 182/656 (27%), Gaps = 138/656 (21%)

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALEN----TDVTIVAHNSY-----FERTVLKACFNL 86
               +        H           LE+     +   +  +       ++   L      
Sbjct: 345 CTSSNKSIYIPLFHIG--------LLESNIDLEECQKLFFSLKGKLYTYDLKELLK-LGF 395

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                     +++A         +       +    ++   E        +  E L   +
Sbjct: 396 SFQ-KPVYD-MMIAYHLVSSQTKED---YTSIGQYYLKTIAEDEKTVFAKQKIETLSIDS 450

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
             N           C   +    +  +    L   E  L  +  ++  +G  +D      
Sbjct: 451 YGNFLLKRSQILYSCLEPLEKDLKEKELENVLWETELPLIPVLASMEKQGIKIDRKYFQK 510

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVL 263
            +  ++ +   L++E+         +    ++L   LFL+  L     T+   +T   VL
Sbjct: 511 YSLELNEKLVLLEKEIWKEAG-EEFNINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVL 569

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
            +      Q         + ++     ++ + + +  D R+      +G + TGR S   
Sbjct: 570 ENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFDDRIHTCYHQIG-TVTGRLSSSD 628

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  +                              +R   IA +G KL+  D + 
Sbjct: 629 PNLQNIPVKTEEGIR-------------------------IRQGFIARDGWKLLSIDYSQ 663

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E RVLA ++ ++  +KA++  +DL+  T  + F                          
Sbjct: 664 VELRVLAALSKDENLVKAYQEKQDLHSVTAKKIF-------------------------- 697

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                                  + +          NF     +     A E        
Sbjct: 698 -----------------ELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDA 740

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
               K +  ++ RV++   E+ +  EQ                          +  +   
Sbjct: 741 AEYIKRYFAQYPRVAQFETEIIEFAEQ--------------------------HGYVETY 774

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT----- 618
            GR  +   + +    +     Q  R           +VQ  + +IL + M+        
Sbjct: 775 FGRKRIIDGIHSKNRMVKN---QAERMA------VNTVVQGTAAEILKKVMIKIYSWLLG 825

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           K    ++L VHDE++ E  +         L + M +     + + L+        +
Sbjct: 826 KTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQL-EEVELEVNTNIGNTW 880


>gi|254797027|ref|YP_003081864.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
 gi|254590261|gb|ACT69623.1| DNA polymerase I [Neorickettsia risticii str. Illinois]
          Length = 816

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 80/629 (12%), Positives = 176/629 (27%), Gaps = 167/629 (26%)

Query: 57  LKEALENTDVTIVAH--NSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVG 113
           +++ L +  +  + H  N            + D     +    V+A     L + L+ + 
Sbjct: 333 VQDLLTDQSIKKIFHSDNI----------PHPDPANESFEDLKVIAYPLNTLNTDLEYLF 382

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                 +      K L   + K                                   ++ 
Sbjct: 383 SHYLGETSPEAFHKRLNELYDKLR-----------------------NAMFTEKVLTLYY 419

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +++           + + +   G  +DV    +L+  +  +  +++ ++   T G   S 
Sbjct: 420 KVDKPL------INVIKHMEKNGISLDVEQLLSLSTQISGKLEEIENKIFD-TAGKTFSL 472

Query: 234 RCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           +  ++L   LF E  + ++   +    +T   VL+S      +      +     +    
Sbjct: 473 QSPKQLGKVLFEEMQIPVQKKLKTGLSSTDNEVLTSLSSQGYEIADYLLSWRHYIKLKTA 532

Query: 290 KLNTLVEAMNSDGRLR--GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
            ++ L+  +N   +     T      + TGR S      QN+PR                
Sbjct: 533 YIDPLLLKVNPSEKKHRISTTYSTTLTLTGRLSSSNPNLQNIPR---------------- 576

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           +R    A EG   + AD + IE R+LA++A  +    A  +G D
Sbjct: 577 -------------EKNIRKIFTAKEGHYFLCADYSQIELRILAYIANVERLKCALASGTD 623

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+  T ++ F     ++T + R   K +   + Y            +  L +        
Sbjct: 624 LHTLTASQIFKT--DKITPNLRNKAKAVNFGIVYG-----ITNFGLSKQLAI-------- 668

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                                   + +  ++  +    N +   
Sbjct: 669 -------------------------------SKEEAASYIQKYFDEYPEIKSYMNHIRNQ 697

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            ++                          +  +     R    +++ ++       +   
Sbjct: 698 AKK--------------------------DTYVKTIMNRKCPIQNINSDN---RAISLIA 728

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAG---YDIVLTVHDEIVCETPDTDEFN- 643
            R            +Q  + DI+   M+   +       +V+ VHDE+V E         
Sbjct: 729 ERSAINAP------IQGTAADIIRAAMVRMAQEKELLSHMVMQVHDELVFELETDAIQQL 782

Query: 644 ASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
           A  +  +M        G+PL  E      
Sbjct: 783 AKKIKQIMEEP----HGIPLLVELKHGPN 807


>gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705]
 gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705]
          Length = 955

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 96/672 (14%), Positives = 194/672 (28%), Gaps = 154/672 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A         +        +   L + L++     + H    E   L    +LD+ +  
Sbjct: 404 IAVAT-ATSAAIVSLPITDTLRAQLAQFLKSEHSRTIVHGYK-ELLHLLGAVDLDLDL-P 460

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T +            ++ +A +            I      +  +   D +     E
Sbjct: 461 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 512

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202
                      D+ + R +   L P+  + ++ W           +   +   G  VD  
Sbjct: 513 DPNELR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 569

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258
              ++      E  +  QE+     G+  + +  ++L+  LF + GL     T++    T
Sbjct: 570 RLVSMRDQFAAE-ARQAQEMAWEYAGIEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 628

Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310
               L          ++       +  +R   ++   + + TL++A N SD R+  T + 
Sbjct: 629 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 686

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             A+ TGR S      QN+P  + +  E                         +R   + 
Sbjct: 687 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 720

Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            EG + L+  D + +E R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR
Sbjct: 721 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 780

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           +  K M   L Y                                                
Sbjct: 781 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 799

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +        E +K  +     +V +    L     +                   
Sbjct: 800 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 837

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR   +  + +          +               +Q  + DI
Sbjct: 838 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 881

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662
           +   M+ A            I+L +HDE+V E    +    + L    M      A  +P
Sbjct: 882 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 939

Query: 663 LKAEGYESKRYR 674
           L         ++
Sbjct: 940 LDVSCGIGSDWQ 951


>gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101]
 gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101]
          Length = 866

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 95/644 (14%), Positives = 179/644 (27%), Gaps = 130/644 (20%)

Query: 39  DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D    L    +   +    + LKE  EN D+    ++     T LK    ++        
Sbjct: 344 DEKNYLINFKELAQEEENIKALKEFFENEDILKNGYSIKNALTALKK-LGIEFKGLA-FD 401

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
             + A            GE   LS       K    +  + +     + +      +   
Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKDGEEDLVGISFMKELTLVLKKKI 456

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              +  +    +   +                +  ++   G+ V+  +   L+     E 
Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
            +  +E+  L      +    ++L   LF +  L +   T+   +T   VL   K   P 
Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++     + S+     +  L   +++DG +  T      + TGR S      QN+P  
Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391
                E                         +R   I   EG  L+ AD + IE RVLA 
Sbjct: 620 YEMGRE-------------------------IRKVFIPKEEGDLLISADYSQIELRVLAH 654

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G++  + AF    D++  T +  F V   +VT   R+  K +   + Y  G  +  + 
Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ- 713

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                LN++        +   E +   + +   +             +     R      
Sbjct: 714 ----DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNR--RRYIPEAN 767

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +  V  L     +        G A    K   V +    K+ N     L S   L   
Sbjct: 768 ASNKIVKALG---ERLAMNAPIQGTAADIIKLAMVNVYNKLKELN-----LNSKLILQVH 819

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
           D                                   DI+ +                   
Sbjct: 820 DELIINVVKGEL------------------------DIVKK------------------- 836

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                         +L   M +       +PL  +    + + K
Sbjct: 837 --------------LLKEEMENTIK--LSVPLDVDVNVGEDWYK 864


>gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12]
 gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12]
          Length = 894

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 80/600 (13%), Positives = 168/600 (28%), Gaps = 135/600 (22%)

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                 +++A         +      +   +K+ E ++ +    K E+       +   +
Sbjct: 409 KPVYD-MMIAYHLVSSQTKEDYTLIGQYYLKKIAEDEKTVFAKQKLESLSAEVYGDFLLN 467

Query: 151 REAWRLFGEYCKGDV--------TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
               R    Y   D+         +   ++         E  L  +   +   G  +D  
Sbjct: 468 ----RAGVLYSCLDILEEDVKEKELEAVLW-------ETELPLIPVLADMERIGIKIDRK 516

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
                +  +  +   L++ +         +    ++L   LFL+  L     T+   +T 
Sbjct: 517 YFEAYSLELTEKLALLEKAIWEEAG-EEFNLNSPKQLGEILFLKLNLPTGKKTKTGFSTD 575

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             VL        Q         + ++     ++ + +      R+      +G + TGR 
Sbjct: 576 VEVLEHLSSQGFQIASNLLEYRKLAKLKNTYVDPIPKMTGEGDRIHTCYHQIG-TVTGRL 634

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  +                              +R   IA EG KL+  
Sbjct: 635 SSSDPNLQNIPVKTEEGIR-------------------------IRQGFIAREGWKLLSI 669

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + +E RVLA ++ ++  LKA++  +DL+  T  R F                      
Sbjct: 670 DYSQVELRVLASLSKDENLLKAYQEKQDLHSVTAKRIF---------------------- 707

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                                      + +          NF     +     A E    
Sbjct: 708 ---------------------ELQEDEEVSREQRIMAKIINFSIIYGKTPFGLAKELGIS 746

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                   K +  ++ RV++   ++    E+                          +  
Sbjct: 747 VKDAGEYIKRYFAQYPRVAQFERQVITFAEE--------------------------HGY 780

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT- 618
           +    GR  +   + +    + +   Q  R           +VQ  + +IL + M+    
Sbjct: 781 VETYFGRRRIIDGIHSKNKMVKS---QAERMA------VNTVVQGTAAEILKKVMIKIYS 831

Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
               K    ++L VHDE++ E  +         L   M       + + L+        +
Sbjct: 832 WLSQKTDIHLLLQVHDELIFEIQEGKLQEYEENLIRFMRETIQL-EEVELEVNTNIGDTW 890


>gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 950

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 96/672 (14%), Positives = 194/672 (28%), Gaps = 154/672 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A         +        +   L + L++     + H    E   L    +LD+ +  
Sbjct: 399 IAVAT-ATSAAIVSLPITDTLRAQLAQFLKSEHSRTIVHGYK-ELLHLLGAVDLDLDL-P 455

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T +            ++ +A +            I      +  +   D +     E
Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 507

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202
                      D+ + R +   L P+  + ++ W           +   +   G  VD  
Sbjct: 508 DPNELR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 564

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258
              ++      E  +  QE+     G+  + +  ++L+  LF + GL     T++    T
Sbjct: 565 RLVSMRDQFAAE-ARQAQEMAWEYAGIEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 623

Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310
               L          ++       +  +R   ++   + + TL++A N SD R+  T + 
Sbjct: 624 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 681

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             A+ TGR S      QN+P  + +  E                         +R   + 
Sbjct: 682 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 715

Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            EG + L+  D + +E R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR
Sbjct: 716 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 775

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           +  K M   L Y                                                
Sbjct: 776 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 794

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +        E +K  +     +V +    L     +                   
Sbjct: 795 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 832

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR   +  + +          +               +Q  + DI
Sbjct: 833 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 876

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662
           +   M+ A            I+L +HDE+V E    +    + L    M      A  +P
Sbjct: 877 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 934

Query: 663 LKAEGYESKRYR 674
           L         ++
Sbjct: 935 LDVSCGIGSDWQ 946


>gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
 gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703]
          Length = 948

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 103/660 (15%), Positives = 200/660 (30%), Gaps = 142/660 (21%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
                 D      M Q L+   +    ++V H    E   L     +++P      T + 
Sbjct: 402 GEAIRIDVFSPD-MVQCLQRLFDRYHHSMVVHGYK-EHAHLLGSIGVELP-EPLFDTKLA 458

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIAR-----FCKGETHECLYDRNKPNHREAW 154
                       + +          E +   A      F + E ++   D          
Sbjct: 459 GYLAHPDFHADTLEQVAAHFLDLHIEAQAEAATQGTLDFDEPEENDSKNDELILTRTAIV 518

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
            L  EY  G +         L         +  +   +   G  VD+A    +   +  +
Sbjct: 519 GLLAEYLAGVLDK--REQFGLLKSIE--LPVSQVLHGMEQVGAQVDMARLVQMRDQLAAD 574

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLT 270
             +  +         V + +  ++L+  LF + GL     T++    T    L + +  +
Sbjct: 575 AAQAQETAWQFAGEQV-NLQSPKQLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLRDRS 633

Query: 271 PQ-------AIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGC 322
                       +  +R +     +  + TL++A N  DGR+  T +   A+ TGR S  
Sbjct: 634 YDNDRACQFLDALLMHREKNKLKQI--VQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSV 690

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADL 381
               QN+P    +  E                         +RS  +  EG + L+ +D 
Sbjct: 691 DPNLQNIPNRDPAGRE-------------------------IRSAFVPGEGFESLLSSDY 725

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + +E R++A ++G++  ++AF +G+D +    +  + +    +T DQR+  K M   L  
Sbjct: 726 SQVELRIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITSDQRSHVKAMSYGL-- 783

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         GL+    A  +K                                  
Sbjct: 784 ------------AYGLSTYGLAQQLKIK------------------------------PK 801

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E +K  +     +V E    L  +  +                               
Sbjct: 802 EAESLKNQYFATFGKVHEYLESLVSSARE--------------------------KGYTE 835

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620
              GR   +  + +    +        R            +Q  + DI+   M+ A  A 
Sbjct: 836 TIFGRRRYFPGLKSPNRAVRDA---AERAALNAP------IQGSAADIMKIAMIRAYDAL 886

Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                G  ++L +HDE+V E    +E  A +++   M    + A  +PL         ++
Sbjct: 887 QEANLGSRLILQIHDELVVEIAPGEEKQATALVKDAMEHAVTMA--VPLDVSTGIGSDWQ 944


>gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346]
          Length = 882

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 80/652 (12%), Positives = 183/652 (28%), Gaps = 122/652 (18%)

Query: 33  FAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
               + ++       +       P    + L +       +++      L          
Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVGK--MT 393

Query: 91  HRWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 L+ A              V +     + + +E              E ++  + 
Sbjct: 394 GIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
               +A +      K D  +T +   + +     E  L  +   +   G  VD      +
Sbjct: 454 ARKIKAIQFLT--SKLDSELTEK--NQADLFYKMELPLSRILGDMEITGIRVDATRLKEM 509

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS 264
                    ++++++ +       +    ++L   LF + GL +   T+   +T   VL 
Sbjct: 510 QVEFSERLKEIEEKIYAEAG-EEFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLE 568

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
             K+  P    +   R   ++     +  L++ +  D ++         ++TGR S    
Sbjct: 569 QLKEQAPIVADILTYRQ-IAKIQSTYVEGLLKVIQPDNKIHTRYVQ-TLTQTGRLSSVDP 626

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VADLAG 383
             QN+P       +                         +R   +  E   L+  +D + 
Sbjct: 627 NLQNIPIRLEEGRK-------------------------IREAFVPREDNWLIFSSDYSQ 661

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKVMELALGYQ 442
           IE RVLA ++ ++   +AF  G+D++ +T  R F V     VT + R   K +   + Y 
Sbjct: 662 IELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG 721

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                      +  L +         ++  E++   + +   +  +  +    +      
Sbjct: 722 IS-----DYGLSQNLGITREQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR- 775

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             R       ++  +        +    T   G A    K   + +              
Sbjct: 776 -RRYLSDINSRNFNLRSF---AERTAINTPIQGSAADILKIAMIEM-------------- 817

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
                                            +L E  +QA         ++       
Sbjct: 818 -------------------------------AHRLKEEKLQAT-------MLLQVHDE-- 837

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                    +V E P+++      ++  +M    S    +PL  +    K +
Sbjct: 838 ---------LVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878


>gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 321

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 67/424 (15%), Positives = 117/424 (27%), Gaps = 115/424 (27%)

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRT 316
           T + VL+   +      +V       S+      + L E +N   GR+  +     A  T
Sbjct: 1   TAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-VT 59

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      QN+P  +                              +R   +A +G KL
Sbjct: 60  GRLSSSDPNLQNIPIRTAEGRR-------------------------IRQAFVAPKGYKL 94

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A +A ++  L AF    D++  T A  F V    VT D R   K + 
Sbjct: 95  LAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAIN 154

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G++    A  +                              
Sbjct: 155 F--------------GLIYGMSAFGLAKQI------------------------------ 170

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +     +  ++  V +          +                          
Sbjct: 171 GVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE-------------------------- 204

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
              +    GR L   D+        +  +   R            +Q  + DI+ + M+ 
Sbjct: 205 QGFVETIFGRRLYLPDINAKNQ---SLRKGAERMAINAP------MQGTAADIIKKAMVA 255

Query: 617 ATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669
                        ++L VHDE+V E  +         +   M+     A  +PL  E   
Sbjct: 256 VNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIRPHMSGAAELA--VPLLVEVGV 313

Query: 670 SKRY 673
              +
Sbjct: 314 GNNW 317


>gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304]
 gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304]
          Length = 976

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 89/621 (14%), Positives = 190/621 (30%), Gaps = 150/621 (24%)

Query: 95  CTLVLARSN--GLPSALKAVGEA----LKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            T +          + ++   +     L L +++  +          G   +     +  
Sbjct: 461 DTRLEGYLVQPDATAKIETAAQYAQYFLHLETEENPQPHPQQGALDLGNDSDLSSQGSNE 520

Query: 149 NHREAWRLFGEYCKGDVT------VTREIFKRLEPLSSKEQELWY----------LDQTI 192
           +++          + D            + +   P+  K QE+            +   +
Sbjct: 521 DNQPDQEDQAAQARRDARDAKECAYILALHQLFYPVLEKRQEISLLKDIELPVSTVLARM 580

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  VD +    +      +  + +  +     G   + +  ++L+  LF + GL   
Sbjct: 581 ELTGAGVDYSRLRNMYDSFAAQAAQAE-HIAWDQAGKQINLQSPKQLQAVLFDDMGLEPT 639

Query: 253 DLTET----TCQRVLSSN--KKLTPQAIQ----VFNNRMRASRSAVLKLNTLVEAMN-SD 301
             T++    T    L     + +  +               ++   + + TL++++N SD
Sbjct: 640 RKTKSGGRTTNAAALQELYIRSVHNERANTFLGALLRHREVNKLKQI-VQTLMDSVNTSD 698

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  T +   A+ TGR S      QN+P  +    E                       
Sbjct: 699 GRIHTTFEQTVAA-TGRLSSTDPNLQNIPNRNVEGRE----------------------- 734

Query: 362 DCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R+  + S+G   L+ +D + +E R++A ++G++  ++AF +G D +    +  + V 
Sbjct: 735 --IRAAFVPSDGYLSLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYQVP 792

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             Q+T DQR+  K M   L Y                                       
Sbjct: 793 LDQITPDQRSHIKAMSYGLAY-----GLSTYGL--------------------------- 820

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                       A +        +++K  +     +V +    L    +   + G     
Sbjct: 821 ------------AQQLGISPAQSDQLKAKYFSTFGKVHDYLESLVSQAK---KRGYTTTM 865

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                   GR   + D+ ++R           R           
Sbjct: 866 -----------------------FGRRRYFPDLLSSR---RQLRDAAQRAALNAP----- 894

Query: 601 IVQAVSRDILAEGMMN----ATKAG--YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTS 653
            +Q  + DI+   M        +AG    I+L +HDE+V E    +E    +++ + M  
Sbjct: 895 -IQGSAADIMKIAMNKAATSLDEAGVKSRIILQIHDELVVELASGEEEEVTALVKNAMEE 953

Query: 654 NPSWAKGLPLKAEGYESKRYR 674
               A  +PL         ++
Sbjct: 954 AVELA--VPLDVSTGIGSDWQ 972


>gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
 gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1]
          Length = 888

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 98/601 (16%), Positives = 178/601 (29%), Gaps = 145/601 (24%)

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +P+  W    + A          A   + ++L        EG            +     
Sbjct: 416 VPLAVWFDLGLAAYLLNPESRAYAFDRLRDSLFADPSVDTEG-------VSPTDNARAAA 468

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                        G   +    +   +                +   +   G  +D    
Sbjct: 469 LLADVLAARLETAGL-SRLVAELEMPL--------------VPVLVAMERAGIGIDKTAF 513

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQ 260
                 V      L+ ++ +L      + R  ++L   L+ + GL     T     +T Q
Sbjct: 514 AAFADEVAGRLAILETDIVALAG-KPFNPRSSQQLGEILYTDLGLKAHGKTPGGAASTSQ 572

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
             L       P   ++   R +  +     L  +    + D R+  TL    A+ TGR S
Sbjct: 573 DALERLAGAHPLVDRILEFR-KLEKLRSTYLAPMPALADRDSRIHTTLN-NMATATGRLS 630

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QN+P                                 +R+C  A  G +LV AD
Sbjct: 631 SSNPNLQNIPIRGEFGRR-------------------------MRACFTAGPGNRLVAAD 665

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE RVLA ++GE   L AF  G D++  T A  F+     +  D+R   K +     
Sbjct: 666 YSQIELRVLAHLSGESALLDAFAHGADIHARTAAILFDKPEEAIAPDERRQAKTIN---- 721

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G+     +                               +     
Sbjct: 722 ----------FGLLYGMGPQKLS------------------------------RDLGIKL 741

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
            A +     + ++   +S  +  + +A ++                          +  +
Sbjct: 742 DAAKAFIARYFERLPGLSAFYEGIVEAAKR--------------------------DGFV 775

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
              +GR  +  D+G+  S     + Q  R+          +VQ  + DI+   M+ A   
Sbjct: 776 TTLAGRRRLLPDIGSANS---QLSSQARRQAI------NTVVQGGAADIIKMAMLAAAGD 826

Query: 621 GYD------IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                    +VL +HDE++ ETP+     A + L  LMT   S A  +PL+ +    + +
Sbjct: 827 AALAGLGAVLVLQIHDELLLETPEAAAKEAGARLAGLMTGVISLA--VPLEVDWGTGRTW 884

Query: 674 R 674
            
Sbjct: 885 G 885


>gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122]
 gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122]
          Length = 905

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/501 (15%), Positives = 146/501 (29%), Gaps = 112/501 (22%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             +  L  +   +   G  +DV     + + V  E   +   +  L      +    ++L
Sbjct: 506 DIDLPLVPVLAVMERVGARIDVDALAEMGRSVAEEIDGIRTRVFELAG-EEFNLDSPKQL 564

Query: 240 KTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF + GL     T    +T  + LS  + + P A ++   R   ++     +  L  
Sbjct: 565 SVVLFEKLGLPHGKKTQRGYSTDAKTLSKLEDVHPIAREILRYR-ELAKMESTYIEALPR 623

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
               DG +         + TGR S      QN+P  +                       
Sbjct: 624 MRAGDGLVHTHFNQTVTT-TGRLSSSDPNLQNIPVRTEFGRR------------------ 664

Query: 357 LQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R C +    G   + AD + IE R+LA ++ ++  + AF +G D + +T AR
Sbjct: 665 -------IRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDEHLVHAFCSGADFHASTAAR 717

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F V   +VT   R+  K +   + Y       Q       L +         +   E +
Sbjct: 718 VFGVPLEEVTPSMRSRAKAVNFGIVYGQ-----QAFGLAQNLGIGFKEAQEMIDRYFEAY 772

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                F     E                                                
Sbjct: 773 PGVRAFLDGTVEEVRACGYATTMF------------------------------------ 796

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                 +RR +P +  K                        R+ +N   +          
Sbjct: 797 -----GRRRHIPELKAKNPAQRGF---------------GERTAMNHPMQG---SAADIV 833

Query: 596 KLTENIVQAVSRDILAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMT 652
           K+  N VQ                 G    +++ VHDE+    P ++     +++   MT
Sbjct: 834 KMAMNEVQ-----------RRLVDGGFAAQVMIQVHDELDLSVPVSELDAVGALVRDAMT 882

Query: 653 SNPSWAKGLPLKAEGYESKRY 673
           +  +    +PL  +   +K +
Sbjct: 883 NVVT--LEVPLIVDVQSAKTW 901


>gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 317

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 63/419 (15%), Positives = 119/419 (28%), Gaps = 115/419 (27%)

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L       P    +   R   ++      + L + +N       T      + TGR S  
Sbjct: 2   LQELALDYPLPKVLIEYR-GLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSST 60

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P  +                              +R   +A  G K++  D +
Sbjct: 61  DPNLQNIPVRNEEGRR-------------------------IRQAFVAPHGWKIMAVDYS 95

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G+Q  L AF  G+D++  T A    V   QV+ +QR   K +       
Sbjct: 96  QIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF----- 150

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G++                                  A +       
Sbjct: 151 ---------GLIYGMS------------------------------AFGLAKQLGIPRGE 171

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +     + +++  V +   +      Q                             +  
Sbjct: 172 AQEYMDKYFERYPGVMQYMEDTRSRAAQ--------------------------LGYVET 205

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619
             GR L   ++ +  +      +   R            +Q  + DI+ + M+   +   
Sbjct: 206 IFGRRLHLPEITSRNAMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIE 256

Query: 620 ----AGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   +++ VHDE+V E  ++        +  LM S    A  +PL AE      +
Sbjct: 257 REGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 313


>gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
 gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis
           L2-32]
          Length = 895

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 101/660 (15%), Positives = 198/660 (30%), Gaps = 142/660 (21%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
                 D      M Q L+   +    ++V H    E   L     +++P      T + 
Sbjct: 349 GEAIRIDVFSPD-MVQCLQRLFDRYHHSMVVHGYK-EHAHLLGSIGVELP-EPLFDTKLA 405

Query: 100 ARSNGLPSALKAV--GEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKPNHREAW 154
                       +    A  L      + +        F + E ++              
Sbjct: 406 GYLAHPDFHADTLEQAAAHFLDLHIEAQAEAATQGTLDFDEPEENDSKNGELILTRTAIV 465

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
            L  EY  G +         L         +  +   +   G  VD+     +   +  +
Sbjct: 466 GLLAEYLAGVLDK--REQFGLLKSIE--LPVSQVLHGMEQVGAQVDMTRLVQMRDQLAAD 521

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLT 270
             +  +         V + +  ++L+  LF + GL     T++    T    L + +  +
Sbjct: 522 AAQAQETAWQFAGEQV-NLQSPKQLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLRDRS 580

Query: 271 PQ-------AIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSGC 322
                       +  +R +     +  + TL++A N  DGR+  T +   A+ TGR S  
Sbjct: 581 YDNDRACQFLDALLMHREKNKLKQI--VQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSV 637

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADL 381
               QN+P    +  E                         +RS  +  EG + L+ +D 
Sbjct: 638 DPNLQNIPNRDPAGRE-------------------------IRSAFVPGEGFESLLSSDY 672

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + +E R++A ++G++  ++AF +G+D +    +  + +    +T DQR+  K M   L  
Sbjct: 673 SQVELRIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITSDQRSHVKAMSYGL-- 730

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         GL+    A  +K                                  
Sbjct: 731 ------------AYGLSTYGLAQQLKIK------------------------------PK 748

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E +K  +     +V E    L  +  +                               
Sbjct: 749 EAESLKNQYFATFGKVHEYLESLVSSARE--------------------------KGYTE 782

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620
              GR   +  + +    +        R            +Q  + DI+   M+ A  A 
Sbjct: 783 TIFGRRRYFPGLKSPNRAVRDA---AERAALNAP------IQGSAADIMKIAMIRAYDAL 833

Query: 621 -----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                G  ++L +HDE+V E    +E  A +++   M    + A  +PL         ++
Sbjct: 834 QEANLGSRLILQIHDELVVEIAPGEEKQATALVKDAMEHAVTMA--VPLDVSTGIGSDWQ 891


>gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Bifidobacterium longum DJO10A]
          Length = 682

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 96/672 (14%), Positives = 192/672 (28%), Gaps = 154/672 (22%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A         +        +   L   L++     + H    E   L    +LD+ +  
Sbjct: 131 IAVAT-ATSAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 187

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T +            ++ +A +            I      +  +   D +     E
Sbjct: 188 MFDTKLAGYLAQPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEE 239

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVA 202
                      D+ + R +   L P+  + ++ W           +   +   G  VD  
Sbjct: 240 DPNEHR---LRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSV 296

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----T 258
              ++      E  +  QE+     G   + +  ++L+  LF + GL     T++    T
Sbjct: 297 RLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTT 355

Query: 259 CQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQF 310
               L          ++       +  +R   ++   + + TL++A N SD R+  T + 
Sbjct: 356 NAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQ 413

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             A+ TGR S      QN+P  + +  E                         +R   + 
Sbjct: 414 TVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFVP 447

Query: 371 SEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
            EG + L+  D + +E R++A ++ ++  ++AF +G D +    +  + +   Q+T DQR
Sbjct: 448 GEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQR 507

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           +  K M   L Y                                                
Sbjct: 508 SHVKAMSYGLAY-----GLSTYGL------------------------------------ 526

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +        E +K  +     +V +    L     +                   
Sbjct: 527 ---AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------- 564

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                          GR   +  + +          +               +Q  + DI
Sbjct: 565 -------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADI 608

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLP 662
           +   M+ A            I+L +HDE+V E    +    + L    M      A  +P
Sbjct: 609 MKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VP 666

Query: 663 LKAEGYESKRYR 674
           L         ++
Sbjct: 667 LDVSCGIGSDWQ 678


>gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 955

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/661 (14%), Positives = 191/661 (28%), Gaps = 153/661 (23%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           +        +       L++     + H    E   L    +LD+ +     T +     
Sbjct: 414 IVPLPITDTLRAQFARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-PMFDTKLAGYLT 471

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                  ++ +A +            I      +  +   D +     E           
Sbjct: 472 QPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEEDPNEHR---LR 520

Query: 164 DVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVALAHTLNQIVDV 213
           D+ + R +   L P+  + ++ W           +   +   G  VD     ++      
Sbjct: 521 DLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAA 580

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN--- 266
           E  +  QE+     G   + +  ++L+  LF + GL     T++    T    L      
Sbjct: 581 E-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVK 639

Query: 267 ----KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSG 321
               ++       +  +R   ++   + + TL++A N SD R+  T +   A+ TGR S 
Sbjct: 640 SVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQTVAA-TGRLSS 696

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVAD 380
                QN+P  + +  E                         +R   +  EG + L+  D
Sbjct: 697 VDPNLQNIPNRNAAGRE-------------------------IRGVFVPGEGYEALMSCD 731

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + +E R++A ++G++  ++AF +G D +    +  + +   Q+T DQR+  K M   L 
Sbjct: 732 YSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLA 791

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y                                                   A +     
Sbjct: 792 Y-----GLSTYGL---------------------------------------AQQLKIAP 807

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              E +K  +     +V +    L     +                              
Sbjct: 808 REAEALKNRYFDTFGKVHDYLESLVANARE--------------------------KGYT 841

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618
               GR   +  + +          +               +Q  + DI+   M+ A   
Sbjct: 842 ETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAADIMKIAMIRAEQT 892

Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                    I+L +HDE+V E    +    + L    M      A  +PL         +
Sbjct: 893 LAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCGIGSDW 950

Query: 674 R 674
           +
Sbjct: 951 Q 951


>gi|325662094|ref|ZP_08150713.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471757|gb|EGC74976.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 341

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 147/321 (45%), Gaps = 32/321 (9%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +  + ID ET S +D+ K G+ KYAE  +  ++LFA   D   V ++D     V+P  + 
Sbjct: 4   IKEMSIDLETYSDVDIKKSGVYKYAESENFEILLFAVSIDGGDVIVYDLACGDVLPDEIL 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACF------------------NLDIPIHRWICTLVLA 100
           +A+ + DV   A N+ FER  L                         +    W CT++ +
Sbjct: 64  DAIVSDDVIKWAFNASFERICLSYWMKRNYPDRFCSYSIPEDTVGNYLDPASWRCTMIWS 123

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRL 156
              GLP +L+ VG  L L  QKM+EGK+LI  F   CK         RN P H  E W +
Sbjct: 124 AYMGLPLSLEGVGAVLGLKDQKMKEGKDLIRYFCVPCKPTKSNGGRTRNFPMHAPEKWTV 183

Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           F  Y K DV V   I ++L   P+     E + LDQ INDRG  VD+ +        +  
Sbjct: 184 FKSYNKRDVEVEIGIKEKLHKFPVPDFVWEEYLLDQEINDRGILVDLQMVENAIAFDERS 243

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
           +  +  E+  LT   + +   + ++K+WL  + G+ +E L +     ++    +      
Sbjct: 244 KATITDEMLGLTD--IDNPNSVSQMKSWLSDQ-GIEVESLGKKVVAEMIKDAPED---LA 297

Query: 275 QVFNNRMRASRSAVLKLNTLV 295
           QV + R + ++S+V ++  + 
Sbjct: 298 QVLSLRQQLAKSSVNRVGEIP 318


>gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
 gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana
           CCMP1335]
          Length = 745

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 120/790 (15%), Positives = 198/790 (25%), Gaps = 217/790 (27%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFA--------FGFDDHPVE--LWD-CVHDPVM 53
             D E    IDL + G         V   +        +G  D P      D       +
Sbjct: 35  ACDTE-VMDIDLKEVGP---VGHGYVTCISVYSGEDFDYGLGDGPGTMLWIDNLDDAKDL 90

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP---SAL 109
            Q  K  LE+  V  V HN  F+R VL   FN  I +  +   T+ +AR +       +L
Sbjct: 91  LQEFKPWLEDAKVMKVWHNYGFDRHVL---FNEGINVLGFGGDTMHMARLSDTSRMKYSL 147

Query: 110 KAVGEAL----KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
           +++ E L    K+  +++     L      G   +           +    + +Y   D 
Sbjct: 148 ESLTEDLLKQRKVPMKEIFGVPRLRKDGTDGAIVDIPPVEVMQRDPKFRESWIKYSAMDA 207

Query: 166 TVTREIFKRLEPLSS----------------KEQELWYLDQTINDRGYCVDVALAHTLNQ 209
             T  +++ L+                      +    L   +  RG  V       +  
Sbjct: 208 KSTYNLYQHLKKELLKVGWIRQMNMMQYYQLHMRPFGELLTDLERRGMLVAKDYLADVEV 267

Query: 210 IVDVERTKLDQELESLT------YGLVSSSRCLEKLKTWLF------------------- 244
               +R    +             GL  +     +L T+LF                   
Sbjct: 268 QARKDREGHVEAFRQWAFKQLGPDGLAMNLASSVQLTTFLFGGAENAKTKEPTEKVRVFK 327

Query: 245 ----------------------------LETGLHLEDLT----ETTCQRVLSSNKKLTPQ 272
                                          G+  +  T     +    VL         
Sbjct: 328 TAREDIPDDAMEAYPKNEQEPKYVDVTVRSLGMTPDKFTVSGAPSATADVLRKLAGDPFA 387

Query: 273 AIQVFNNRMR-----------------------ASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
               +                                    L +L    +   R+  +L 
Sbjct: 388 DPPKYGAAYEFFGGGEAGHEACVAFFSLTAIGSIDTMIANFLTSLQTLADDQNRVHCSLN 447

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               + TGR S      QN P                          L+     +R   +
Sbjct: 448 IN--TETGRLSSRKPNMQNQP-------------------------ALEKDKYKIRQAFM 480

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           AS G  L+VAD   +E R+LA M      + AFE G D +  T    F          Q 
Sbjct: 481 ASPGNNLIVADYGQLELRLLASMTDCTSMIDAFEAGGDFHSRTALGMFK-------YIQD 533

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           A+     L             +             L    ++        NF     +  
Sbjct: 534 AVANGDVL-------------LEWDYSKGEPPKPMLKDQYASERRKAKTLNFSIAYGKTA 580

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              + +        E + +AW      V +      +A                      
Sbjct: 581 HGLSQDWGVSLKEAEEMLRAWYDSRPEVEKWQQNTKKAARN------------------- 621

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                    I     GR           +          R            +Q  + D+
Sbjct: 622 -------YGITRTLMGRYRHLPHAMEGNN--RKRLGHAERASINTP------IQGGAADV 666

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKG-- 660
               M+         K G+ +++ VHDE++ E P +T E     +   M     W  G  
Sbjct: 667 AMMAMIKINDSLLLKKLGWILLMQVHDEVILEGPEETAEEAFEEVVKCMQEP--WVLGLD 724

Query: 661 ---LPLKAEG 667
              +PL  +G
Sbjct: 725 KTKVPLLVDG 734


>gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 950

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/661 (14%), Positives = 191/661 (28%), Gaps = 153/661 (23%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           +        +       L++     + H    E   L    +LD+ +     T +     
Sbjct: 409 IVPLPITDTLRAQFARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-PMFDTKLAGYLT 466

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                  ++ +A +            I      +  +   D +     E           
Sbjct: 467 QPDFHADSLKQAAEHFLD--------IHFTETEQPSQGTLDFDDDQVEEDPNEHR---LR 515

Query: 164 DVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVALAHTLNQIVDV 213
           D+ + R +   L P+  + ++ W           +   +   G  VD     ++      
Sbjct: 516 DLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAA 575

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN--- 266
           E  +  QE+     G   + +  ++L+  LF + GL     T++    T    L      
Sbjct: 576 E-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVK 634

Query: 267 ----KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWSG 321
               ++       +  +R   ++   + + TL++A N SD R+  T +   A+ TGR S 
Sbjct: 635 SVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFEQTVAA-TGRLSS 691

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVAD 380
                QN+P  + +  E                         +R   +  EG + L+  D
Sbjct: 692 VDPNLQNIPNRNAAGRE-------------------------IRGVFVPGEGYEALMSCD 726

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + +E R++A ++G++  ++AF +G D +    +  + +   Q+T DQR+  K M   L 
Sbjct: 727 YSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLA 786

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y                                                   A +     
Sbjct: 787 Y-----GLSTYGL---------------------------------------AQQLKIAP 802

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              E +K  +     +V +    L     +                              
Sbjct: 803 REAEALKNRYFDTFGKVHDYLESLVANARE--------------------------KGYT 836

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618
               GR   +  + +          +               +Q  + DI+   M+ A   
Sbjct: 837 ETIFGRRRYFPALHSTNRVAREAAER---------AALNAPIQGSAADIMKIAMIRAEQT 887

Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                    I+L +HDE+V E    +    + L    M      A  +PL         +
Sbjct: 888 LAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCGIGSDW 945

Query: 674 R 674
           +
Sbjct: 946 Q 946


>gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall]
 gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502]
 gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397]
 gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall]
          Length = 875

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 100/674 (14%), Positives = 203/674 (30%), Gaps = 141/674 (20%)

Query: 17  TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64
            +  +  Y E   ++LF+       +      V   D             +V KE  E+ 
Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLIKNTKEQFIEVCKEIFESK 381

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  + +++   RT+L+    ++    +     + A           V +  ++SS   E
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIK-FDINLAAYLIDP------VRKEYEISSLASE 433

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
              + I R  +    + +                E    +  +   ++         EQ 
Sbjct: 434 YLFKNINREDEFLKIKEVNI------MPNLYKVLEEKIKEQDMEELLY-------KVEQP 480

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L      +   G+ VD  +   L +    E      E+ S++     +    ++L   LF
Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EEFNINSPKQLGKILF 539

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +  L +   T+   +T   VL   +   P   ++   R   ++     +  L  A++ D
Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G++         + TGR S      QN+P       E                       
Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634

Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V 
Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +VT   R   K +   + Y  G  +  +      LN+         ++  E + + + 
Sbjct: 693 IEEVTPLMRGNAKAVNFGIVYGIGDFSLSQ-----DLNITRKEAKQYIDAYLERYPNVKL 747

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +   + E   E       +     R  K  +  +  V        +    +   G A   
Sbjct: 748 YLENIVEEAIEKGYVSTILNR--RRYIKEVKSSNKIVKA---AGERLAMNSPIQGSAADI 802

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            K   V +                 R L   +  ++                        
Sbjct: 803 IKLAMVNVH----------------RKLKEDNFKSS------------------------ 822

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPDTDEFNASMLYHLMTSNPSWAK 659
                   I+    +        ++L VH DE+        E   +++   M        
Sbjct: 823 --------II----LQVHDE---LILNVHKDEL--------EKIKALVKKEMEQVLELKV 859

Query: 660 GLPLKAEGYESKRY 673
           G  L  +      +
Sbjct: 860 G--LDVDINIGNNW 871


>gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri]
          Length = 869

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/663 (12%), Positives = 189/663 (28%), Gaps = 144/663 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            +I F    +   V  +D +H     ++  + L +     + +++      L    N+ +
Sbjct: 329 EIIGFGI-VNSKGVFYFDYIHAKH-DKLWHQFLNDNKYQKLTYHAKSLIVALAR-DNIFV 385

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
               +   ++        +   ++   + L  +K      L   F  G+       +  P
Sbjct: 386 QNIEY-DMMLAGYVYNSNAK-NSLDTYINLFEKKQI----LTDEFFYGK----GVKKQIP 435

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYC 198
                   F        +   ++  ++  L    Q           + +    +   G  
Sbjct: 436 ADVIKLGHFI---GEKASYIHKLRPKIIELLKTNQQYDLYHNIELPIAFALARMEINGVK 492

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
           VD     T    ++    +L+ E+  +      +    +++   LF    L       +T
Sbjct: 493 VDQYELTTQTLRIEKIVQELNNEINDI-AQKEINPNSPKQISELLFQNFSLPDRKKG-ST 550

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
            Q  L   K       ++ + R +  +     L  + + + +DG++    +    + TGR
Sbjct: 551 AQETLEEIKNNHVIIPKILDYR-KYQKLYSTYLKGMEKYIFADGKVHTIYKQ-TLTNTGR 608

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI-ASEGKKLV 377
            S      QN+                              I   VR   + +S    L+
Sbjct: 609 LSSVEPNMQNISIR-------------------------DHIQKEVRKIFVVSSPDNILL 643

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
             D + IE R+LA M+ +Q  + AF   ED++  T  + FN++  ++T + R   K +  
Sbjct: 644 SCDYSQIELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIFNLSKDEITPNIRRSAKAVNF 703

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G++                                  A +  
Sbjct: 704 G--------------IIYGISDFGL------------------------------ATDLN 719

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                 + +   + Q+   +      + +  E   +NG                      
Sbjct: 720 ISVAKAKAIINNYYQQFPTIKAF---IDKQVEFCKQNGYVTTIFN--------------- 761

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                   R     ++ +         +++              +Q  + DI+   + N 
Sbjct: 762 --------RKRYVSEINDRNYMQREFGKRI---------AMNMPIQGSAADIIKIALKNI 804

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670
            +          I+  +HDE++ E P  +      +  + M  +      + L  +    
Sbjct: 805 DQEFLKLNLKAKIIAQIHDELIFEIPQVELIQVQKIVKILMEDSTK--LDVKLIVDMKTG 862

Query: 671 KRY 673
             +
Sbjct: 863 LSW 865


>gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
 gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279]
          Length = 932

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 89/602 (14%), Positives = 168/602 (27%), Gaps = 135/602 (22%)

Query: 86  LDIPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
           LD    R   T+V A       +      + E    ++     G++         +    
Sbjct: 448 LDADPARLFDTVVAAYLLDSVRSDFADAHLAETYLHAALPAAAGED--GAPADAPSAAAR 505

Query: 143 YDRNKPNHREAWRLFGE-YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
                   RE      E     D+             +  E  L  +  ++   G  VD 
Sbjct: 506 SAWLARILREPLAAALEAQGAEDI------------FTKIEMPLVRVLASMERAGMYVDP 553

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----- 256
           A     ++ +  +  +L   +  L  G   +     +L   LF + GL    L +     
Sbjct: 554 ARLAAQSEELSGQIAELSDRIRELAGGEEFNLSSPMQLSRVLFDKLGLPTAGLKKTQRGY 613

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T  +VL    K       +   R   ++     L+TL     +DGR+  T      + 
Sbjct: 614 YSTNAKVLEDLAKDYEIVRLILEYR-ERTKIKSTYLDTLGALRETDGRVHTTYNQ-TITA 671

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  S                          +   V+      EG  
Sbjct: 672 TGRLSSSNPNLQNIPTRSE-------------------------LGHAVKKAFSVEEGSV 706

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
            V  D + IE R+LA ++G++  + AF  GED +  T AR F V   +VT   R+  K +
Sbjct: 707 FVAIDYSQIELRLLAHLSGDEHLVGAFNEGEDFHAETAARVFGVPVEEVTPQLRSRAKAV 766

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y       Q    +  L++         ++    +     +         +    
Sbjct: 767 NFGIVYGQ-----QAYGLSQALDIPMAEAREMIDAYFRAYPGVRTYLDETVAFAKQTGYA 821

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           +                                             +RR +P + +   +
Sbjct: 822 ETMY-----------------------------------------GRRRPIPELRVPAQR 840

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTT--TRQLTREYTYGGKLTENI-VQAVSRDILAE 612
                                R+ +N                ++ E +  +  +  ++  
Sbjct: 841 MF-----------------GERTAMNHPMQGSAADIIKIAMVRVAERLRTEGFAAKMI-- 881

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESK 671
             +               E+  E P  +     +M+   M         +PL A+    +
Sbjct: 882 --LQVHD-----------ELDFECPVGEVDALVAMVREEMEGVAQ--LRVPLIADASVGE 926

Query: 672 RY 673
            +
Sbjct: 927 TW 928


>gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
 gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3]
          Length = 870

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 96/618 (15%), Positives = 185/618 (29%), Gaps = 133/618 (21%)

Query: 65  DVTIVAHNSYFERTVLKACF--NLDIPIHRWICTLVLARSNGLPSALKA---VGEALKLS 119
            +T   H+S     V  A       +       T++L       ++  A   + E   + 
Sbjct: 372 SITKRTHDSK---PVYAAALRQGFTVSDAEPDDTMLLGYLLNPLASSYAPARLCEEYTVF 428

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               E     +     G     L  R         R   E  +       ++++      
Sbjct: 429 PPATEN----VPDGFSGCVDTALAVRAL--APVLLRKLTENGQE------KLYR------ 470

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G+ VD A      + +  +   ++QE+         +    ++L
Sbjct: 471 EVELPLARVLAQMEHAGFLVDAAGIAAYGETLGKKLAAIEQEIVDAVGYP-FNLNSPKQL 529

Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF++ GL     T+   +T   VL   +   P    +   R + S+      + L++
Sbjct: 530 GEALFVKLGLPHGKKTKTGWSTSADVLDKLRGAHPAIDALLGYR-KLSKLKSTYTDGLLK 588

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            +  DGR+  +      +RTGR S      QN+P  S    EL                 
Sbjct: 589 VIAPDGRIHSSFNQ-VETRTGRISSTEPNLQNIPVRSAEGREL----------------- 630

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                   R   +A  G  LV AD + IE R+LA +A +   + AF   ED++  T ++ 
Sbjct: 631 --------RRFFVARPGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTITASQV 682

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F + P  VT   R+  K +   + Y  GA +  +      + ++            +++ 
Sbjct: 683 FGMPPEYVTPIMRSRAKAVNFGIVYGIGAFSLSQ-----DIGVSVKEADSYIKGYLQKFS 737

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
              ++   +     E    +   G    RV       +  +        +    T   G 
Sbjct: 738 GVRDYMERVIREAHEKGYVETLFGR--RRVLPELLSSNHNMRAFG---ERVARNTPIQGT 792

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
           A    K                                     +     +L RE      
Sbjct: 793 AADIIKI-----------------------------------AMVRVRDRLERE------ 811

Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655
                +Q  +  ++    +                ++ E P+ +   A  +    M    
Sbjct: 812 ----QMQ-SA--LI----LQVHDE-----------LIVEAPEDEAARAGQILEEEMEGAA 849

Query: 656 SWAKGLPLKAEGYESKRY 673
           S    + L+A+ +    +
Sbjct: 850 S--LRVRLEADVHTGHTW 865


>gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
 gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47]
          Length = 850

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 80/622 (12%), Positives = 175/622 (28%), Gaps = 130/622 (20%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKA--CFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           ++E L++  V IV     ++   +           I      ++ +       +      
Sbjct: 350 VEEILKSESVKIV-----YDLKNIFHELYLENTDNIRNCEDVMIASYVLDSTRS------ 398

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +L +  +      +A   K +    +    +     +          D+   + ++  
Sbjct: 399 SYELETLFISYLNTDLAAVKKDKKVTSVILLKRLWDELS-------SLIDLNSCQFVYT- 450

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                + E+ L  +   +   G+ VD        + ++ +   L++++  +      +  
Sbjct: 451 -----NIERPLIPILYEMEKAGFKVDRDALLQYTKEIESKILNLEKQIYQIAG-EWFNIN 504

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF +  L +   T+   +T   VL            + + RM  ++      
Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMY-TKILTTYC 563

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++A+N       T      + TGR +      QN+P                     
Sbjct: 564 QGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGR-------------- 609

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   I  EG  L+ AD + IE R+LA ++ ++  + AF+   D++  
Sbjct: 610 -----------LIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQ 658

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V    VT + R+  K +   + Y               + ++        N  
Sbjct: 659 TAAEVFGVDIDDVTPEMRSQAKAVNFGIVYGIS-----DYGLARDIKISRKEAAEFINRY 713

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E +   + +   + +   ++            R  K  +  +           +    +
Sbjct: 714 FERYPKVKEYLDNIVKFARDNGYVLTLFNR--RRYVKDIKSANRNARNY---AERIAMNS 768

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
              G A    K   + +                     Y+ +  N        +      
Sbjct: 769 PIQGSAADIMKLAMIKV---------------------YQKLKENNLKSKIILQVHDELL 807

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
                  +        DI+                    EIV                 M
Sbjct: 808 IEAPYEEK--------DIVK-------------------EIV--------------KREM 826

Query: 652 TSNPSWAKGLPLKAEGYESKRY 673
            +    A  +PL  E  E   +
Sbjct: 827 ENAV--ALKVPLVVEVKEGLNW 846


>gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland]
 gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613]
          Length = 875

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 99/674 (14%), Positives = 204/674 (30%), Gaps = 141/674 (20%)

Query: 17  TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64
            +  +  Y E   ++LF+       +      V   D             +V +E  E+ 
Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCREMFESK 381

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  + +++   RT+L+    ++    +     + A           V +  ++SS   E
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIK-FDINLAAYLINP------VRKEYEISSLASE 433

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
              + I R  +    + +                E    +  +   ++         EQ 
Sbjct: 434 YLFKNINREDEFLKIKEVNI------MPNLYKVLEEKIKEQDMEELLY-------KVEQP 480

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L      +   G+ VD  +   L +    E      E+ S++     +    ++L   LF
Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EEFNINSPKQLGKILF 539

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +  L +   T+   +T   VL   +   P   ++   R   ++     +  L  A++ D
Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G++         + TGR S      QN+P       E                       
Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634

Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V 
Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +VT   R+  K +   + Y  G  +  +      LN+         ++  E + + + 
Sbjct: 693 IEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ-----DLNITRKEAKQYIDAYLERYPNVKL 747

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +   + E   E       +     R  K  +  +  V        +    +   G A   
Sbjct: 748 YLENIVEEAVEKGYVSTILNR--RRYIKEVKSSNKIVKA---AGERLAMNSPIQGSAADI 802

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            K   V +                 R L   +  ++                        
Sbjct: 803 IKLAMVNVH----------------RKLKEDNFKSS------------------------ 822

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPDTDEFNASMLYHLMTSNPSWAK 659
                   I+    +        ++L VH DE+        E   +++   M        
Sbjct: 823 --------II----LQVHDE---LILNVHKDEL--------EKIKALVKKEMEQVLELKV 859

Query: 660 GLPLKAEGYESKRY 673
           G  L  +      +
Sbjct: 860 G--LDVDINIGNNW 871


>gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum]
          Length = 831

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 75/493 (15%), Positives = 150/493 (30%), Gaps = 123/493 (24%)

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            +  +   +   G  V +       + ++ +   L+ E+         S    +++   L
Sbjct: 435 PVARIIVGMEKAGIPVSLTRILEAKKTIEEKIAGLEAEIYREAGQT-FSILSPKQVGEVL 493

Query: 244 FLETGLHLEDLT------ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +   GL     T       +T +  L     L P    + + R    +     L  + E 
Sbjct: 494 YGRLGLPPPRRTGKGSGAPSTDEEALEGLAALHPLPKLILSFRQ-LRKFLSTYLLPMEEG 552

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
             SDGRL G      A+ TGR S      QN+P  +                        
Sbjct: 553 RGSDGRLHGQFNQTVAA-TGRLSSSRPNLQNIPARTE----------------------- 588

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
             +   VR C +A +G  L+ AD + IE R+LA  +G+ +  +AF  GED++  T A  F
Sbjct: 589 --LGLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHARTAALLF 646

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
                  T + R   K +                    G++                   
Sbjct: 647 GEPV---TSESRRRAKTINF--------------GILYGMS------------------- 670

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                          + +        + +   +    + V   + ++ +   +T      
Sbjct: 671 -----------AYSLSQDLGVEPAEAQGIIDRYFSVVAGVGPYFEKIREEARRT------ 713

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                 +    GR     ++ ++            R        
Sbjct: 714 --------------------GRIRTLLGRIRPIPEIRSDN---RNVREYGERMA------ 744

Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-L 650
             +++Q  + D++ + M++ ++A         ++L VHDE++ E  +    + S +    
Sbjct: 745 VNSVLQGSAADLVKKAMVDLSQAVASSGLKARLLLQVHDELLFEVSEDQAESLSAVVRKT 804

Query: 651 MTSNPSWAKGLPL 663
           M      +  LP+
Sbjct: 805 MEGAIPLSVPLPV 817


>gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
 gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916]
          Length = 875

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 100/674 (14%), Positives = 204/674 (30%), Gaps = 141/674 (20%)

Query: 17  TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64
            +  +  Y E   ++LF+       +      V   D             +V KE  E+ 
Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEMFESK 381

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  + +++   RT+L+    ++    +     + A           V +  ++SS   E
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIK-FDINLAAYLIDP------VRKEYEISSLASE 433

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
              + I R  +    + +                E    +  +   ++         EQ 
Sbjct: 434 YLFKNINREDEFLKIKEVNI------MPNLYKVLEEKIKEQDMEELLY-------KVEQP 480

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L      +   G+ VD  +   L +    E      E+ S++     +    ++L   LF
Sbjct: 481 LTETLSAMETEGFKVDKDILLQLEKRFKGEIESTQLEIYSMSE-EEFNINSPKQLGKILF 539

Query: 245 LETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            +  L +   T+   +T   VL   +   P   ++   R   ++     +  L  A++ D
Sbjct: 540 EKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAIDED 598

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G++         + TGR S      QN+P       E                       
Sbjct: 599 GKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE----------------------- 634

Query: 362 DCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F V 
Sbjct: 635 --IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVP 692

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             +VT   R+  K +   + Y  G  +  +      LN+         ++  E + + + 
Sbjct: 693 IEEVTPLMRSNAKAVNFGIVYGIGDFSLSQ-----DLNITRKEAKQYIDAYLERYPNVKL 747

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +   + E   E       +     R  K  +  +  V        +    +   G A   
Sbjct: 748 YLENIVEEAVEKGYVSTILNR--RRYIKEVKSSNKIVKA---AGERLAMNSPIQGSAADI 802

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            K   V +                 R L   +  ++                        
Sbjct: 803 IKLAMVNVH----------------RKLKEDNFKSS------------------------ 822

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPDTDEFNASMLYHLMTSNPSWAK 659
                   I+    +        ++L VH DE+        E   +++   M        
Sbjct: 823 --------II----LQVHDE---LILNVHKDEL--------EKIKALVKKEMEQVLELKV 859

Query: 660 GLPLKAEGYESKRY 673
           G  L  +      +
Sbjct: 860 G--LDVDINIGNNW 871


>gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 328

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 130/331 (39%), Positives = 185/331 (55%), Gaps = 16/331 (4%)

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-----EDLY 409
             +Q+ S  +R C++A  GKKLVV+DL+ IE R+LAW+AGEQWKL AF         DLY
Sbjct: 3   SVMQLASSALRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPDLY 62

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
              YAR+FN++   VTK QR IGKVMEL LG+ GG  AF   A   GL+L   A     N
Sbjct: 63  KLAYARAFNISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAALPN 122

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
              +   +A+ +     +    + + +     AC+ +K+ WR+ H    + W +L +   
Sbjct: 123 IPRDVQREAKGWYDESVKRKATYGLSERVFI-ACDSLKRLWRRAHPETCDFWYQLERTVR 181

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV---GNNRSYL--NTTT 584
             I      +         + +++D   L + LPSGR+L Y        N +Y+  N+ +
Sbjct: 182 TAIATPAKTL-----YCGYLKVRRDGAWLRIQLPSGRALCYPSPTIEKGNITYMGINSYS 236

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
           R+  R  TYGGKL EN+ QA +RD+LA  M     AGY IVLTVHDE++CE PDTD++  
Sbjct: 237 RKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIENAGYSIVLTVHDEVICEAPDTDDYTD 296

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + L  L+++NP WA  +PL A G+E+  YRK
Sbjct: 297 AALSSLLSTNPEWAPDIPLNAGGFEAYHYRK 327


>gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
 gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I
 gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725]
          Length = 850

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 80/622 (12%), Positives = 176/622 (28%), Gaps = 130/622 (20%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSNGLPSALKAVGE 114
           ++E L++  V        ++   +    NL+    I      ++ +       +      
Sbjct: 350 IEEILKSDTVK-----IMYDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRS------ 398

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           + +L +  +      I    K +    +    +                D+   + ++  
Sbjct: 399 SYELETLFVSYLNTDIEAVKKDKKIVSVVLLKRLWDELLR-------LIDLNSCQFLY-- 449

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                + E+ L  +   +   G+ VD        + ++ +  KL+ ++  +      +  
Sbjct: 450 ----ENIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAG-EWFNIN 504

Query: 235 CLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             ++L   LF +  L +   T+   +T   VL            + + RM  ++      
Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMY-TKILTTYC 563

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L++A+N       T      + TGR +      QN+P      +              
Sbjct: 564 QGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGK-------------- 609

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   +   G  L+ AD + IE R+LA ++ ++  + AF+   D++  
Sbjct: 610 -----------LIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQ 658

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T A  F V  A VT + R+  K +   + Y               + ++        N  
Sbjct: 659 TAAEVFGVDIADVTPEMRSQAKAVNFGIVYGIS-----DYGLARDIKISRKEAAEFINKY 713

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            E +   + +     +   ++           +R  K  +  +  +        +    +
Sbjct: 714 FERYPKVKEYLDNTVKFARDNGFVLTLFNR--KRYIKDIKSTNRNLRGY---AERIAMNS 768

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
              G A    K   + +                     Y+ +  N        +      
Sbjct: 769 PIQGSAADIMKLAMIKV---------------------YQKLKENNLKSKIILQVHDELL 807

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
                  +        DI+                    EIV                 M
Sbjct: 808 IEAPYEEK--------DIVK-------------------EIV--------------KREM 826

Query: 652 TSNPSWAKGLPLKAEGYESKRY 673
            +    A  +PL  E  E   +
Sbjct: 827 ENAV--ALKVPLVVEVKEGLNW 846


>gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
 gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301]
          Length = 955

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 96/673 (14%), Positives = 191/673 (28%), Gaps = 156/673 (23%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A         +        +   L   L++     + H    E   L    +LD+ +  
Sbjct: 404 IAVAT-ATSAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 460

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T +            ++ +A +                      E           +
Sbjct: 461 MFDTKLAGYLTQPDFHADSLKQAAEHFLD------------LHFTETEQPSQGTLDFDDD 508

Query: 153 AWRLF-GEYCKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDV 201
                  E+   D+ + R +   L P+  + ++ W           +   +   G  VD 
Sbjct: 509 QVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDS 568

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---- 257
               ++      E  +  QE+     G   + +  ++L+  LF + GL     T++    
Sbjct: 569 VRLVSMRDQFAAE-ARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYT 627

Query: 258 TCQRVLSSN-------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQ 309
           T    L          ++       +  +R   ++   + + TL++A N SD R+  T +
Sbjct: 628 TNAAALQDLYVKSVDNERANGFLGALLRHR-EINKLKQI-VQTLIDATNTSDERIHTTFE 685

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
              A+ TGR S      QN+P  + +  E                         +R   +
Sbjct: 686 QTVAA-TGRLSSVDPNLQNIPNRNAAGRE-------------------------IRGVFV 719

Query: 370 ASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
             EG + L+  D + +E R++A ++G++  ++AF +G D +    +  + +   Q+T DQ
Sbjct: 720 PGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQ 779

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R+  K M   L Y                                               
Sbjct: 780 RSHVKAMSYGLAY-----GLSTYGL----------------------------------- 799

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               A +        E +K  +     +V +    L     +                  
Sbjct: 800 ----AQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANARE------------------ 837

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR   +  + +          +               +Q  + D
Sbjct: 838 --------KGYTETIFGRRRYFPALHSTNRVAREAAERA---------ALNAPIQGSAAD 880

Query: 609 ILAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGL 661
           I+   M+ A            I+L +HDE+V E    +    + L    M      A  +
Sbjct: 881 IMKIAMIRAEQTLAEAHVKSCIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--V 938

Query: 662 PLKAEGYESKRYR 674
           PL         ++
Sbjct: 939 PLDVSCGIGSDWQ 951


>gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
 gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
          Length = 582

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 119/702 (16%), Positives = 205/702 (29%), Gaps = 183/702 (26%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           +D E      L          D  + L           + D      +   L+EALE   
Sbjct: 32  LDIEATGLSPL----------DARMRLLQLAA-GGETFVVDVFEVKDL-SPLREALE-GG 78

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-----LPSALKAVGEALKLSS 120
              V HN+ ++ + L A   + +       T++ A+           +L+AV        
Sbjct: 79  PLKVLHNAKYDYSFLLAQHGIRLSP--LFDTMLAAQLLDGGEQGPSYSLEAVAGRYL--- 133

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                           +       R +   +E  R   EY   D  +   + +RL+ L  
Sbjct: 134 ----------------QETVDKTARREDWSKELSREQLEYAARDAAILLPLHERLQELLE 177

Query: 181 KE---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV- 230
           +E                  +   G  +DV     L ++V   R +  + LES       
Sbjct: 178 REGLGPVSRIEFGAVPAIAEMELAGIRLDVRRWRELERVVRRRRDEAARRLESHFPQPEG 237

Query: 231 ----------SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
                      +    +++    F   G+ L D    T            P A  +   R
Sbjct: 238 VLPLEGLGPRLNLNSPQQIME-AFRSIGIELPDTRMWTL------LTVDHPAARDLLEYR 290

Query: 281 MRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
               +     L T    ++   GR+  +        TGR +      Q +P         
Sbjct: 291 -ELQKKLGTYLETYEGFVHPKTGRIHASFLQCRVP-TGRLACTNPNVQQIPHEDE----- 343

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                    R C +A EG  LV+AD + IE R+LA ++G+   +
Sbjct: 344 ------------------------FRRCFVAGEGNVLVIADYSQIELRILAEVSGDPGFV 379

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF  GEDL+  T A  F V   +VTK+QR+  K +                    G   
Sbjct: 380 EAFRRGEDLHRVTAATMFGVPKEEVTKEQRSAAKRINF--------------GLAYGRGP 425

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
            + A  + T+                                   R+   +   + RV  
Sbjct: 426 RSLAAQLGTDE------------------------------ERARRLIDEYFATYGRVQR 455

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               L++   + ++ G                        L   SGR   +       S 
Sbjct: 456 Y---LNETANRALKEG-----------------------ALRTLSGRLRKFGRTRGLSSA 489

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDE-IVC 634
                ++         +     +Q  S DI    ++            ++  +HDE +V 
Sbjct: 490 ERGALKR---------EAMNYPIQGTSADIAKLALIFIHSELRDLDARLINCIHDEFVVE 540

Query: 635 ETPDTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYESKRYRK 675
              +  E  AS +   M        K +P++ E   S+ +RK
Sbjct: 541 CAEEQAEEAASRVRSAMVRAGERLLKRVPVEVEVAVSREWRK 582


>gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
 gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor]
          Length = 992

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 100/769 (13%), Positives = 203/769 (26%), Gaps = 161/769 (20%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53
             D E    ID+ +           V  F+           F +    +W       P +
Sbjct: 281 ACDTE--VDIDVKQETP---VGHGKVTCFSIYSGTKGAEADFGNGKTCIWVDVLDGGPDV 335

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106
                   E++ +  V HN  F+  V++      I +  +   T+ LAR           
Sbjct: 336 LMEFAPFFEDSSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRTDGG 392

Query: 107 SALKAVGEALKLSSQKMEE----GKELIA--RFCKGETHECLYDRNKPNHREAW------ 154
            +L+ +    ++     +E    GK  +      K    +    +               
Sbjct: 393 YSLEGLTNDHRVMGVVSKELRKIGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQREDR 452

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSS--------------------KEQELWYLDQTIND 194
            L+  Y   D   T ++++ L+                          +    +   +  
Sbjct: 453 ELWICYSSLDSMSTLKLYESLKSKLERKPWTFDGCPRGSLYDFYEEYWRPFGAILVKMET 512

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244
            G  VD A    + ++   +R     +  +            +     +++   F     
Sbjct: 513 AGMLVDRAYLSEIEKVAVAQRKLAADKFRNWASKYCPDAKYMNVNSDTQIRQLFFGGIEN 572

Query: 245 -LETG--LHLEDLTETTCQRVLSSNKKLTPQAIQV-FNNRMRASRSAVLKLNTLVEAMNS 300
             + G  L      +        S  K  P+   +   N +   ++ +   +        
Sbjct: 573 ICKPGDFLPKSKAIKVPNDETAVSEGKKVPKYRTIELFNIVEDLKTDIFTASGWPSVSGD 632

Query: 301 DGRL---RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD----------------- 340
             R    +     + ++     S       +L   S      D                 
Sbjct: 633 ALRNLAGKVPSDLVYSTDDECGSHSEISNCDLEDTSSYGTAYDAFGGGKEGKEACHAIAA 692

Query: 341 -------QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                    +         +   L+     +R   +A+ G  L+VAD   +E R+LA +A
Sbjct: 693 LCEICSIDSLISNFILPLQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLA 752

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
             +  L AF  G D +  T    +      V ++                  K   +   
Sbjct: 753 DCKSMLDAFRAGGDFHSRTAMNMYPHIREAVDEE------------------KVILEWHP 794

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G        L     A        NF     +     A +        +   K W   
Sbjct: 795 QPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPHGLARDWKVSVKEAKDTLKLWYSD 854

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              V     +  Q   +  E                               GRS  + ++
Sbjct: 855 RKEVLAWQMKQKQLAHEKSEVY--------------------------TLLGRSRRFPNM 888

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
            +  S        + R            VQ  + D+    M+   +       G+ ++L 
Sbjct: 889 AHATSGQRGH---IERAAINAP------VQGSAADVAMCAMLEIDRNTRLKELGWTLLLQ 939

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
           VHDE++ E P ++ E   S++   M+     +    + L  +   ++ +
Sbjct: 940 VHDEVILEGPSESAELAKSIVVECMSKPFYGTNILKVDLAVDAKCAQNW 988


>gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065]
          Length = 875

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/676 (14%), Positives = 198/676 (29%), Gaps = 145/676 (21%)

Query: 17  TKCGICKYAEDVCVILFA-------FGFDDHPVELWDCV-----HDPVMPQVLKEALENT 64
            +  +  Y E   ++LF+       +      V   D             +V KE  E+ 
Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYKIDFEMLLNNTKEQFIEVCKEIFESK 381

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  + +++   RT+L+    ++          + A                    +K  
Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIE-FDINLAAYLIDP--------------VRKEY 425

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFG--EYCKGDVTVTREIFKRLEPLSSKE 182
           E   L + +     +                L+   E    +  +   ++         E
Sbjct: 426 EISSLASEYLFKNINREDEFLRIKEVNIMPNLYKVLEEKIKEQDMEELLY-------KVE 478

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
           Q L      +   G+ VD  +   L +    E      E+ S++     +    ++L   
Sbjct: 479 QPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE-EEFNINSPKQLGKI 537

Query: 243 LFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           LF +  L +   T+   +T   VL   +   P   ++   R   ++     +  L  A++
Sbjct: 538 LFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQ-LTKIYSTYIEGLKAAID 596

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            DG++         + TGR S      QN+P       E                     
Sbjct: 597 EDGKIHSNFNQ-TVTATGRLSSTEPNLQNIPIKYEMGRE--------------------- 634

Query: 360 ISDCVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R   I + G   ++ AD + IE RVLA ++ ++  + AF   +D++  T +  F 
Sbjct: 635 ----IRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFK 690

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V   +VT   R   K +   + Y  G  +  +      LN+         ++  E + + 
Sbjct: 691 VPIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQ-----DLNITRKEAKQYIDAYLERYPNV 745

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
           + +   + E   E       +     R  K  +  +  V        +    +   G A 
Sbjct: 746 KLYLENIVEEAIEKGYVSTILNR--RRYIKEVKSSNKIVKA---AGERLAMNSPIQGSAA 800

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
              K   V +                 R L   +  ++                      
Sbjct: 801 DIIKLAMVNVH----------------RKLKEDNFKSS---------------------- 822

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPDTDEFNASMLYHLMTSNPSW 657
                     I+    +        ++L VH DE+        E   +++   M      
Sbjct: 823 ----------II----LQVHDE---LILNVHKDEL--------EKIKALVKKEMEQVLEL 857

Query: 658 AKGLPLKAEGYESKRY 673
             G  L  +      +
Sbjct: 858 KVG--LDVDINIGNNW 871


>gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
 gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969]
          Length = 866

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/644 (14%), Positives = 179/644 (27%), Gaps = 130/644 (20%)

Query: 39  DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D    L    + V +    +  KE  EN D+    ++     T LK    +D        
Sbjct: 344 DEKNYLINFKELVKEEENIKSFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLA-FD 401

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
             + A            GE   LS       K    +  + +     + +      +   
Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKDGEEDLVGISFMKELTLVLKKKI 456

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              +  +    +   +                +  ++   G+ V+  +   L+     E 
Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
            +  +E+  L      +    ++L   LF +  L +   T+   +T   VL   K   P 
Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++     + S+     +  L   +++DG +  T      + TGR S      QN+P  
Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
                E                         +R   I   EG  L+ AD + IE RVLA 
Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G++  + AF    D++  T +  F V   +VT   R+  K +   + Y  G  +  + 
Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ- 713

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                LN++        +   E +   + +   +             +     R      
Sbjct: 714 ----DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNR--RRYIPEAN 767

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +  V  L     +        G A    K   V +    K+ N     L S   L   
Sbjct: 768 ASNKIVKALG---ERLAMNAPIQGTAADIIKLAMVNVYNKLKELN-----LNSKLILQVH 819

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
           D                                   DI+ +                   
Sbjct: 820 DELIINVVKGEL------------------------DIVKK------------------- 836

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                         +L   M +       +PL  +    + + K
Sbjct: 837 --------------LLKEEMENTIK--LSVPLDVDVNVGEDWYK 864


>gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 856

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/666 (13%), Positives = 186/666 (27%), Gaps = 152/666 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           + L   G  +Y +   +        +                 L E L   ++ I     
Sbjct: 318 VALAFEGRGRYPQSFALSRCVLAEREGS-FYLLEPKGDDDYDALVEKLREKEILIWGF-- 374

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
              +    +         +     +         +               +EG   I + 
Sbjct: 375 ---KEFTTSIKKAPFEKDKVWDGKIAYYLLHPDKS-------------SSKEGLAEIKKM 418

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
            K E              EA  LF  Y K    +   +   +      +  L  +   + 
Sbjct: 419 LKSEEGLDK---------EALSLFDLYGKISSEMDEALHGLMY---RIDIPLSVVLSRME 466

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
            +G  +D+     + Q ++     +   ++      V +    +++   LF   GL +  
Sbjct: 467 RKGIRLDLDHLWKVKQELERTLDDVKASIDMAAGYKV-NLNSPKQVGWLLFDHLGLPVIK 525

Query: 254 LTE---TTCQRVLSSNKKLT---PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
            T+   +T   VL    +L        ++  +    ++     +  L++A++       T
Sbjct: 526 KTKTGYSTDVTVLEELSRLDRPEALVAKLLLDHRELTKMLTGFVQPLIDAIDPKTGKVHT 585

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                ++ TGR S      QNLP                              +  ++  
Sbjct: 586 TFEHTSTGTGRLSSRDPNLQNLP-------------------------AYGDWAMKLKEA 620

Query: 368 VIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            +        + AD + IE RVLA ++G++   +AFE G D++  T A  F V   +V+ 
Sbjct: 621 FVPDRRDGIFIAADYSQIELRVLAHISGDKKLCEAFERGRDIHAETAAWIFGVDTEKVSP 680

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R +                        G+     A                       
Sbjct: 681 ELRRMA--------------KMINFGLLYGMTPYGLASR--------------------- 705

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                            + +   +     +V +    + +++E+  + G  +        
Sbjct: 706 ---------LNIGREEAKTIIDRYFSAFPKVGDY---IEKSYEEARKRGYTLSL------ 747

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                             GR           + +  +T  L R            +Q+ +
Sbjct: 748 -----------------FGRRRPL---NEVTTVVGNSTAALKRVAINTP------IQSTA 781

Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659
            DI    M+   +A         ++L +HD ++CE    DE   S +L   M S      
Sbjct: 782 ADITKIAMIRLDEALQRENIDAALILQIHDSLICECSAKDEEVVSGILKESMESAVE--L 839

Query: 660 GLPLKA 665
            +PL+ 
Sbjct: 840 SVPLEV 845


>gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
 gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124]
          Length = 866

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/644 (14%), Positives = 179/644 (27%), Gaps = 130/644 (20%)

Query: 39  DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D    L    + V +    +  KE  EN D+    ++     T LK    +D        
Sbjct: 344 DEKNYLINFKELVKEEENIKSFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLA-FD 401

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
             + A            GE   LS       K    +  + +     + +      +   
Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKEGEEDLVGISFMKELTLVLKKKI 456

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              +  +    +   +                +  ++   G+ V+  +   L+     E 
Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKNILDELSIKFKREL 502

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
            +  +E+  L      +    ++L   LF +  L +   T+   +T   VL   K   P 
Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++     + S+     +  L   +++DG +  T      + TGR S      QN+P  
Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391
                E                         +R   I   EG  L+ AD + IE RVLA 
Sbjct: 620 YEMGRE-------------------------IRKVFIPKEEGDLLISADYSQIELRVLAH 654

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G++  + AF    D++  T +  F V   +VT   R+  K +   + Y  G  +  + 
Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ- 713

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                LN++        +   E +   + +   +             +     R      
Sbjct: 714 ----DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNR--RRYIPEAN 767

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +  V  L     +        G A    K   V +    K+ N     L S   L   
Sbjct: 768 SSNKIVKALG---ERLAMNAPIQGTAADIIKLAMVNVYNKLKELN-----LNSKLILQVH 819

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
           D                                   DI+ +                   
Sbjct: 820 DELIINVVKGEL------------------------DIVKK------------------- 836

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                         +L   M +       +PL  +    + + K
Sbjct: 837 --------------LLKEEMENTIK--LSVPLDVDVNVGEDWYK 864


>gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
 gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1]
          Length = 895

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 107/657 (16%), Positives = 183/657 (27%), Gaps = 122/657 (18%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             V  F F   +           P     L   L +     + H++      + A     
Sbjct: 345 GRVDGFGFATQERAAYAGVEGFTPEDEAALAGWLADATKPKIMHDAKGPELAIDAH-GWS 403

Query: 88  IPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +       T + A           L  +         K E+     + F      E   D
Sbjct: 404 LR-GLVTDTALSAYIVAPDQRSYDLADLTLRYLKRELKQEDDGGQESLFG---DDEVGGD 459

Query: 145 RNKPNHREAWRLFGEYCKG-DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
                     R   +     D  V      RL      E  L +L   +   G  VD   
Sbjct: 460 GVATTSMLYARAVLDLAAELDSAVEAAGGDRLLS--EVELPLLHLLARMEKTGIAVDTEH 517

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQ 260
              L +    +  +   E   +    + +    ++L+  LF E  +     T+T   T  
Sbjct: 518 LDALERHFAGQMKQAADEAYGVIGKEI-NLGSPKQLQVVLFDELDMPKTKRTKTGWTTDA 576

Query: 261 RVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
             L     K   P  + +  +R   +R  V  +  L++ +  DGR+  T     A+ TGR
Sbjct: 577 DALQQLYVKTEHPFLLALLRHR-DVTRLRVT-IEGLLKTVQDDGRIHTTFNQTIAA-TGR 633

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LV 377
            S      QN+P  +                              +R   +   G + L+
Sbjct: 634 LSSTEPNLQNIPVRTEEGRG-------------------------IRKGFVVGGGFESLM 668

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ ++  ++AF +G D +  T AR F V P  V+ +QRA  K M  
Sbjct: 669 TADYSQIEMRIMAHLSEDELLIEAFRSGRDFHSITAARVFGVDPDAVSVEQRAKIKAMNY 728

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
            L Y            +  L +             E +    ++ R + E        + 
Sbjct: 729 GLAYG-----LSAFGLSQQLGIEPSEARGLMEEYFETFGGIRDYLRSLVEEARRTGYTET 783

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                                                       +RR +P +     +  
Sbjct: 784 I-----------------------------------------MGRRRYLPDLLSDNRQRR 802

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                              R  LN   +          K+    VQ  +        ++ 
Sbjct: 803 ET---------------AERMALNAPIQG---SAADLIKVAMLRVQ--AA-------IDE 835

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                 ++L VHDE+V E    +      L    M S       +PL         +
Sbjct: 836 ADLSSRMLLQVHDELVFEVAPGEREALESLVRAQMGSAAD--LNVPLDVSVGTGLSW 890


>gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
 gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239]
          Length = 866

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/644 (14%), Positives = 179/644 (27%), Gaps = 130/644 (20%)

Query: 39  DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D    L    + V +    +  KE  EN D+    ++     T LK    +D        
Sbjct: 344 DEKNYLIKFKELVKEEDNIKAFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLA-FD 401

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
             + A            GE   LS       K    +  + +     + +      +   
Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKEGEEDLVGISFMKELTLVLKKKI 456

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              +  +    +   +                +  ++   G+ V+  +   L+     E 
Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
            +  +E+  L      +    ++L   LF +  L +   T+   +T   VL   K   P 
Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++     + S+     +  L   +++DG +  T      + TGR S      QN+P  
Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
                E                         +R   I   EG  L+ AD + IE RVLA 
Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G++  + AF    D++  T +  F V   +VT   R+  K +   + Y  G  +  + 
Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ- 713

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                LN++        +   E +   + +   +             +     R      
Sbjct: 714 ----DLNISRREAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNR--RRYIPEAN 767

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +  V  L     +        G A    K   V +    K+ N     L S   L   
Sbjct: 768 ASNKIVKALG---ERLAMNAPIQGTAADIIKLAMVNVYNKLKELN-----LNSKLILQVH 819

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
           D                                   DI+ +                   
Sbjct: 820 DELIINVVKGEL------------------------DIVKK------------------- 836

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                         +L   M +       +PL  +    + + K
Sbjct: 837 --------------LLKEEMENTIK--LSVPLDVDVNVGEDWYK 864


>gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
 gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM
           17241]
          Length = 874

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/513 (16%), Positives = 160/513 (31%), Gaps = 109/513 (21%)

Query: 167 VTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           +T EI +  +       E  L  +   +   G+ +D          +D    +    +  
Sbjct: 461 LTDEIREHEQEKLLYEIEMPLARVLAGMECEGFALDTQALRDYGGELDDRIDETHAAIVE 520

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRM 281
                  +    ++L   LF++ GL  +  T+   +T   VL + +   P   ++   R 
Sbjct: 521 YAGYD-FNLNSPKQLGDVLFVKLGLPAKKKTKTGYSTNVDVLEALRPQHPIIGEILEYR- 578

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           + S+     ++ L++ +  DGR+R T Q    +RTGR S      QN+P  +        
Sbjct: 579 KLSKLKSTYVDGLLKVVGPDGRVRSTFQQ-TETRTGRISSTEPNLQNIPIRTEEG----- 632

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R    A  G KLV AD + IE RVLA +A +Q  + A
Sbjct: 633 --------------------SRMRRFFTARPGWKLVDADYSQIELRVLADLADDQNMIAA 672

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F++GED++ TT A+ F +    VT   R+  K +   + Y  GA +  +      + +  
Sbjct: 673 FQSGEDIHATTAAQVFGMPGGTVTPLMRSRAKAVNFGIVYGIGAFSLSQ-----DIGVTV 727

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                   S    +     +         E+       G          R+    +    
Sbjct: 728 SEADSYIKSYLAHYAGVRKYMEDTIAFARENGYVKTLFGR---------RRYLPEL---- 774

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                       N       +R            + + + +                   
Sbjct: 775 ---------AASNKVTQAFGERVARNTPIQGTAADIIKIAM------------------- 806

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
              R   R    G +    ++            +                ++ E PD + 
Sbjct: 807 --VRVFERLRREGLRA--RLI------------LQVHDE-----------LLVEAPDDEI 839

Query: 642 FNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             A ++L   M      A  +PL+A+      +
Sbjct: 840 DRARAILKEEMEHAI--ALKVPLEADTNVGDNW 870


>gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C]
 gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C]
          Length = 483

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/604 (15%), Positives = 165/604 (27%), Gaps = 152/604 (25%)

Query: 95  CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
            T + A          AL  +             G+EL     +    +        +  
Sbjct: 2   DTALAAYLVKPGRRSFALDVLSVEY--------LGREL-----QPPAADGQLAFGADDTA 48

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDV 201
           EA  L  +          ++                    E     L   +   G   D 
Sbjct: 49  EADALMAQ-----ARAVLDLGDAFTAKLPEVGAVELLHEMELPTSELLARLERAGIAADR 103

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT--- 258
                + Q       +  +E  +       +    ++L+   F E  L     T+T    
Sbjct: 104 DHMEGMEQQFAGAVQQAVKEAHAAVGH-EFNLGSPKQLQEVFFGELDLPKTKKTKTGYTT 162

Query: 259 CQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
               L+    +   +   +       ++  V  +  LV+++ +DGR+  +     A+ TG
Sbjct: 163 DADALAWLATQTDHELPVIMLRHREQAKLRVT-VEGLVKSIAADGRVHTSFSQTTAA-TG 220

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-L 376
           R S      QN+P  +                              +R   +  EG + L
Sbjct: 221 RLSSTDPNLQNVPVRTDEGRA-------------------------IRRGFVVGEGYESL 255

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE RV+A ++ ++  ++AF +GEDL+ T  ++ F V  +QV  + R   K M 
Sbjct: 256 MTADYSQIELRVMAHLSEDEGLIEAFLSGEDLHTTVASQVFGVERSQVDAEMRRKIKAMS 315

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L                GL+    A  +    A                         
Sbjct: 316 YGL--------------AYGLSAFGLAQQLNIEPA------------------------- 336

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                    + + + ++   V +    +      T                         
Sbjct: 337 -----EARGLMETFFERFGGVRDYLQRVVDEARAT------------------------- 366

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                   GR     D+ ++            R            +Q  + DI+   M+ 
Sbjct: 367 -GYTATVFGRRRYLPDLNSDN---RQRREAAERMALNAP------IQGTAADIVKVAMLR 416

Query: 617 ATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYE 669
             KA         ++L VHDEIV E    +      L    M +        PL      
Sbjct: 417 VDKAIAEAGLKSRMLLQVHDEIVLEIAPGEAERVEELVRREMGAAVE--LRAPLDVSVGV 474

Query: 670 SKRY 673
              +
Sbjct: 475 GGDW 478


>gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
 gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495]
          Length = 866

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/644 (14%), Positives = 178/644 (27%), Gaps = 130/644 (20%)

Query: 39  DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D    L    + V +    +  KE  EN  +    ++     T LK    +D        
Sbjct: 344 DEKNYLINFKELVKEEENIKSFKEFFENEAILKNGYSIKNALTALKK-LGIDFNGLA-FD 401

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
             + A            GE   LS       K    +  + +     + +      +   
Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKEGEEDLVGISFMKELTLVLKKKI 456

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              +  +    +   +                +  ++   G+ V+  +   L+     E 
Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
            +  +E+  L      +    ++L   LF +  L +   T+   +T   VL   K   P 
Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++     + S+     +  L   +++DG +  T      + TGR S      QN+P  
Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKAVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
                E                         +R   I   EG  L+ AD + IE RVLA 
Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G++  + AF    D++  T +  F V   +VT   R+  K +   + Y  G  +  + 
Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ- 713

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                LN++        +   E +   + +   +             +     R      
Sbjct: 714 ----DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNR--RRYIPEAN 767

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +  V  L     +        G A    K   V +    K+ N     L S   L   
Sbjct: 768 ASNKIVKALG---ERLAMNAPIQGTAADIIKLAMVNVYNKLKELN-----LNSKLILQVH 819

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
           D                                   DI+ +                   
Sbjct: 820 DELIINVVKGEL------------------------DIVKK------------------- 836

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                         +L   M +       +PL  +    + + K
Sbjct: 837 --------------LLKEEMENTIK--LSVPLDVDVNVGEDWYK 864


>gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626]
 gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626]
          Length = 903

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 82/595 (13%), Positives = 157/595 (26%), Gaps = 129/595 (21%)

Query: 87  DIPIHRWICTLVLARSNGLPSALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           D+   R     V A       +   +          ++  G + I               
Sbjct: 426 DVDASRIFDVGVAAYLLESDRSSFTIPSLVEFYFGVELSVGSDKIPAAAYEAVAARALKA 485

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
                 E               + E+F+ +E           +   +  RG  VD A   
Sbjct: 486 TLTKKLED------------DKSLELFETIEMGL------LPVLAAMERRGLFVDPAKLA 527

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTC 259
             ++ +  +     + +         +     +L   LF   GL    L +      +T 
Sbjct: 528 EQSKELGADIASRVERIHEAAG-ETFNLDSPSQLSHVLFDVLGLPTFGLKKTRSGFYSTN 586

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            +VLS           V   R   ++     L+ L   +  D R+  T     A+ TGR 
Sbjct: 587 AKVLSDLADTYQIVADVLEYR-ERAKIKSTYLDALPALIRGDHRIHTTFNQTVAA-TGRL 644

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  S                          +   VR+      G   +  
Sbjct: 645 SSSDPNLQNIPTRSE-------------------------LGHRVRTAFTVPSGHVFLAC 679

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA ++G++  + AF++G D +  T +R+F V   +VT + R+  K +   +
Sbjct: 680 DYSQIELRLLAHLSGDEHLIAAFQSGADFHAATASRTFGVPVEEVTPELRSRAKAVNFGI 739

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y       Q     T L +         +     +     +         E        
Sbjct: 740 VYGQ-----QAYGLATSLKIPRAEAQDMIDRYFAAYPGVRAYLDESVRIAHEKGYAVTMY 794

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
           G   +R  + + Q + ++        +        G A    K   + +    + +    
Sbjct: 795 GR--KRHIREFGQHNRQLIAFG---ERTAMNHPMQGSAADIIKIAMIRVEKRLRKEGC-- 847

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                                                         +  ++    +    
Sbjct: 848 ----------------------------------------------AAKLI----LQIHD 857

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                       +  E P+ +    S L    M         +PL A+      +
Sbjct: 858 E-----------LDLEVPNDEIEAVSRLVKETMEEVVE--LKVPLIADVSYGPNW 899


>gi|255994188|ref|ZP_05427323.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
 gi|255993856|gb|EEU03945.1| DNA polymerase I [Eubacterium saphenum ATCC 49989]
          Length = 918

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 96/684 (14%), Positives = 191/684 (27%), Gaps = 161/684 (23%)

Query: 24  YAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           + +   +    F  D +       + D      + + +    V +V ++       L A 
Sbjct: 337 HIDKPEIYAAYFNVDGN----IWLLDDMAQIHRVLDIVAEEKVKVVGYDLK---NALFAL 389

Query: 84  FNLDIPI-HRWICTLVLARSNGLPSALKA----VGEALKLS-SQKM-----------EEG 126
               +P+   +   ++                 + + L +  S K+           ++ 
Sbjct: 390 LQNGLPLFTPFFDVMLAYEVINNKGKYMDFYKILEDQLGIDVSDKLLKAKRKKTLTADDI 449

Query: 127 KELIARFCKGETHECLYDRNKPNHREAW---------RLFGEYCKGDVTVTREIFKRLEP 177
           KE  A  CK          N                      Y    V +  +++ +L+ 
Sbjct: 450 KERYANICKSLKKTNNDVVNAALGDVESSDENARIGHEDALLYLLETVNI-FKVYDKLKS 508

Query: 178 LSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
                         E  L  +  ++ + G  +D     T    +     +L  ++  L  
Sbjct: 509 QIEEDDLQKVFYEIEMPLVEVIASMENTGVWLDTEFLKTYEAELSNIEAELLDKIYELAG 568

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               +    ++L   LF +  L  +  T+   +T   VL   +K  P    +   R + S
Sbjct: 569 F-EFNVNSPKQLGEVLFEKLNLEPKVKTKRGYSTNAEVLQKLRKTHPIIDLILEFR-KVS 626

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     +   +    +DG++R     +GA  TGR +      Q +P  +   +       
Sbjct: 627 KLNSTYVRGFMGFKGTDGKVRPEFLQIGA-STGRMACINPALQTIPVKTDMGKR------ 679

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                              +R    A + +  V AD + IE R+L  ++ ++  + AF++
Sbjct: 680 -------------------IRKAFKAGKDRVFVSADYSQIELRILGHVSCDEGLINAFKS 720

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GED++              V+K  R+  K +   + Y            +  L +     
Sbjct: 721 GEDIHEAVAVNVLGAQKGAVSKAVRSKAKAINFGVIYGM-----SDFGLSNELEI----- 770

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                  ++    +  KH  V E     
Sbjct: 771 ----------------------------------SRKDAKKYIDEYFAKHRAVYEYMEAQ 796

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
               +QT                                 GR     ++      +    
Sbjct: 797 KSIAKQTGAVRTET--------------------------GRIRKIPEINAQNIMVRNL- 829

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPD 638
               R            +Q +  DI+   M N  +A         IVL +HDE+V +   
Sbjct: 830 --GERLAMNSP------IQGMGADIMKLAMNNVYRAIQKQGLDAKIVLQIHDELVIDASV 881

Query: 639 TDEFNASM-LYHLMTSNPSWAKGL 661
           +D       L   M +  +   GL
Sbjct: 882 SDGEKVKKLLKDEMEAAYNLKTGL 905


>gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
 gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987]
          Length = 866

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 96/644 (14%), Positives = 178/644 (27%), Gaps = 130/644 (20%)

Query: 39  DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           D    L    + V +    +  KE  EN D     ++     T LK    +D        
Sbjct: 344 DEKNYLINFKELVKEEENIKAFKEFFENEDTLKNGYSIKNALTALKK-LGIDFNGLA-FD 401

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
             + A            GE   LS       K    +  + +     + +      +   
Sbjct: 402 CELAAYLIDSSK-----GEYTLLSLINNYLSKFPNVKEGEEDLVGISFMKELTLVLKKKI 456

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              +  +    +   +                +  ++   G+ V+  +   L+     E 
Sbjct: 457 EEEKMERLMYDIELPLET--------------VLSSMESIGFKVNKDILDELSIKFKREL 502

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQ 272
            +  +E+  L      +    ++L   LF +  L +   T+   +T   VL   K   P 
Sbjct: 503 EETQKEIFEL-ADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPI 561

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             ++     + S+     +  L   +++DG +  T      + TGR S      QN+P  
Sbjct: 562 IEKI-TYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTT-TGRLSSTEPNLQNIPIK 619

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
                E                         +R   I   EG  L+ AD + IE RVLA 
Sbjct: 620 YEMGRE-------------------------IRKVFIPKKEGDLLISADYSQIELRVLAH 654

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           ++G++  + AF    D++  T +  F V   +VT   R+  K +   + Y  G  +  + 
Sbjct: 655 ISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ- 713

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                LN++        +   E +   + +   +             +     R      
Sbjct: 714 ----DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNR--RRYIPEAN 767

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
             +  V  L     +        G A    K   V +    K+ N     L S   L   
Sbjct: 768 ASNKIVKALG---ERLAMNAPIQGTAADIIKLAMVNVYNKLKELN-----LNSKLILQVH 819

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
           D                                   DI+ +                   
Sbjct: 820 DELIINVVKGEL------------------------DIVKK------------------- 836

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
                         +L   M +       +PL  +    + + K
Sbjct: 837 --------------LLKEEMENTIK--LSVPLDVDVNVGEDWYK 864


>gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614]
 gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614]
          Length = 889

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 104/671 (15%), Positives = 186/671 (27%), Gaps = 139/671 (20%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVL 80
              A    V   A    D            V  Q  L   L +     V H++      L
Sbjct: 334 HWSAGTGDVTSLALATTDGLAAWVAADQLDVADQTALAGWLADPKRPKVLHDAKGPMLAL 393

Query: 81  KACFNLDIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
            A     +P+      T + A           + +               +    +    
Sbjct: 394 AAW---GLPLAGLDRDTALSAYLARPDQRSYDLADL-------------TVRYLKRELKQ 437

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS----------KEQELWYLD 189
               D          R  GE          ++   L+               E  L  L 
Sbjct: 438 GGADDGQLSLDGLDDRNAGEIEMLHARAVLDLAAALDDELEERGGTRLLNDIELPLVDLL 497

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  VD      L      E     ++   +    + +    ++L+  LF E G+
Sbjct: 498 AKMEQTGIAVDTDHLEALESHFAAEVRDAAEQAFGVIGKEI-NLGSPKQLQAVLFDELGM 556

Query: 250 HLEDLTET---TCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
                T+T   T    L +   K   P  + +  +R   SR     +  L++ +  DGR+
Sbjct: 557 PKTKRTKTGYTTDADALQALYVKTEHPFLLHLLRHR-DVSRLRQT-IEGLLKTVAGDGRI 614

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             T     A+ TGR S      QN+P  +                              +
Sbjct: 615 HTTFNQTIAA-TGRLSSTEPNLQNIPIRTEEGRR-------------------------I 648

Query: 365 RSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           R   +   G + L+ AD + IE R++A ++ +   ++AF++G D +  T AR F+V    
Sbjct: 649 REGFVVGPGYESLMTADYSQIEMRIMAHLSEDDLLIEAFKSGRDFHSITAARVFDVPADD 708

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT + RA  K M   L Y               L +         +   + +    ++  
Sbjct: 709 VTVEMRAKIKAMNYGLAYG-----LSAFGLGQQLGIEPSEARGLMDEYFQTFGGIRDYLG 763

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
            + E   +    +                                             +R
Sbjct: 764 GVVEEARKAGFTETI-----------------------------------------WGRR 782

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R +P +     +          R  +   +  N     +    +        +       
Sbjct: 783 RYLPDLTSDNRQ----------RREMAERMALNAPIQGSAADLIKIAMLNVDR------- 825

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
           A++   LA  M+          L VHDE+V E    ++    +L    M +    A  +P
Sbjct: 826 AIAAAGLASRML----------LQVHDELVFEVAPGEQEPLEVLVREQMGAAADLA--VP 873

Query: 663 LKAEGYESKRY 673
           L       + +
Sbjct: 874 LDVSVGFGRSW 884


>gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88]
 gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88]
          Length = 882

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 94/635 (14%), Positives = 191/635 (30%), Gaps = 138/635 (21%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHR-WICTLVLARSNGL 105
            +     ++LK   E   V +V+H    +  VL      LD+   +      + A     
Sbjct: 373 ENKDKTIEILKTIFEKEAVRVVSH----DVKVLSMALKKLDVEFTKALFDLKIAAYLIDS 428

Query: 106 PSALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
             +   +   ++  LS    ++ +  I      E                  +   Y   
Sbjct: 429 SKSDYDLSTLIQECLSKIVKDDEEREIRETSLLEKLCANLKEQI----INLEMEKLY--- 481

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
              V   +                +   +   G+ VD  +   + + +  E  K+ +E+ 
Sbjct: 482 -YEVELPLAF--------------VLANMELEGFKVDGEMLENIGKKLQREIEKVQKEIY 526

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNR 280
            L      +    ++L   LF +  L +   T+   +T  +VL   +   P   ++    
Sbjct: 527 EL-ADEEFNVNSPKQLGKILFEKLDLPVIKKTKTGYSTNAQVLEVLEDKHPIISKI-GYY 584

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            + ++     +  L   ++ DGR+  +      + TGR S      QN+P       E  
Sbjct: 585 RQLTKLYSTYVEGLKNVIDEDGRIHSSFNQTVTT-TGRLSSTEPNLQNIPIKYEMGRE-- 641

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                  VR   + + E   ++ AD + IE RVLA +A ++  +
Sbjct: 642 -----------------------VRKVFVPNYENSIILSADYSQIELRVLAHIADDENLI 678

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            AF+   D++  T +  F V   +VT + R   K +   + Y  G       +    L +
Sbjct: 679 NAFKHHADIHTKTASEVFKVPIDEVTVNMRGNAKAVNFGIVYGIG-----DFSLAKDLKI 733

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +        ++  E + + + +     +           +     R       K+  V  
Sbjct: 734 SRKEAKGYIDTYFERYPNVKKYMDETIDKAKRDMYVTTILNR--RRFIPEIGNKNKIVKA 791

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           L     +    T   G A    K   V +  +                L  RD+ +    
Sbjct: 792 LG---ERLAMNTPIQGSAADIIKMAMVKVFNV----------------LKERDLKSK--- 829

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCETPD 638
                                        I+    +        ++L V+ DE+      
Sbjct: 830 -----------------------------II----LQVHDE---LILNVYKDEL------ 847

Query: 639 TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             E   S++   M +       +PL+ +  E + +
Sbjct: 848 --EEIKSIVKDSMENVLP--LSVPLEVDINEGENW 878


>gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 879

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 93/632 (14%), Positives = 173/632 (27%), Gaps = 145/632 (22%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--- 106
           P +   L E L + D   V  ++  +   L       I +       ++           
Sbjct: 363 PAVRDALAEWLAS-DTPKVMADAKPQVKALLR---EGIALGGIASDVILAGWLVRPSFPD 418

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             L  + +      +K+ E                          E              
Sbjct: 419 KTLGDLVQRY--LDEKLPEADPTQLVPETEGATPGQLAWFIRRVAE---------AQRAD 467

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           +   + + L+     E         +   G  V  A     +  +      L ++  +  
Sbjct: 468 LPERVAEVLD---DIEMPTLTALADMELAGVAVSHAKLSGFSAELGARADALARDAYAAI 524

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKK--LTPQAIQVFNNRM 281
              V +    ++L+  LF E  L     T++   T    L+  ++    P    +  +R 
Sbjct: 525 GHEV-NLGSPKQLQEVLFDELQLPKTRKTKSGYTTDAAALADLQESAPHPFLDLLLKHRE 583

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                 +  ++ L  A   DGR+  T    G+ +TGR S      QN+P  +        
Sbjct: 584 ATKLKQI--IDALDTATGPDGRIHTTYVQTGS-QTGRLSSTDPNLQNIPIRTEE------ 634

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLK 400
                              S  +R+     EG   L+ AD + IE R++A ++G+   ++
Sbjct: 635 -------------------SRRIRAAFEVGEGYETLLTADYSQIEMRIMAHLSGDPGLIE 675

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +GEDL+    AR F V PA+VT   R   K M   L Y            +  L   
Sbjct: 676 AFNSGEDLHRFVGARVFGVEPAEVTPAMRTKVKAMSYGLVYG-----LSAFGLSKQL--- 727

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                   +  +++   +  +   V + 
Sbjct: 728 ------------------------------------RIEQSEAKKLMLEYFARFGAVRDY 751

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +   Q                          +       GR   + D+ +     
Sbjct: 752 LRGSVEQARQ--------------------------DGYTETIFGRRRPFPDLTSMN--- 782

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                   R            +Q  + DI+   +    +          ++L +HDE+V 
Sbjct: 783 RVLRENAERAALNAP------IQGSAADIMKVALFRIREELASAGLRSRVLLQIHDELVV 836

Query: 635 ETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
           E    +      +    M         +PL  
Sbjct: 837 EIAPGEWDAVERIVRARMADAAE--LSVPLDV 866


>gi|162135103|ref|YP_001595844.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513950|emb|CAO77776.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 664

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 100/714 (14%), Positives = 194/714 (27%), Gaps = 132/714 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHPVELWDCVH--DPVMP-QVL 57
             + ID ETR   DL K G       +  +   +F  +D P       H     +P + +
Sbjct: 31  KRVAIDCETR-DPDLRKLGPGAGRRPNSYITGISFAIEDGPGGYLPIRHEGGGNLPLEGV 89

Query: 58  KEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARS---NGLPSAL 109
              L           V  N  ++   L     ++    R+     +            ++
Sbjct: 90  LAYLRAQAKVFTGDLVGANLPYDLDFLA-GDGIEFERVRYFRDIQIADPLICELHDSYSM 148

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           +A+ E          + + L+         +              +  G+Y + D  +  
Sbjct: 149 QAIAERWGF----YGKDEALLRAAAVDYGIDPKK----DMWMLPAKFVGKYAEEDTRLPL 200

Query: 170 EIFKRLEPLSSKEQEL---------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            I +R E    ++              +   +  RG  +D      + +    + T+   
Sbjct: 201 NILRRQEREIDEQDLWGVYNLESKLLPILTRLRRRGVRIDCDRLDMIERWALEKETEALA 260

Query: 221 ELESLTYGLVSSSRCLE-KLKTWLFLETGLHLEDL--TETTCQRVLSSNKKLTPQAIQVF 277
           ++ S+T   ++     + ++        G+ L      + +  + L     +      + 
Sbjct: 261 QVRSITGHRIAVGDVWKPEVIAPALEHIGIKLNKTSQGKPSIDKEL--LGSIDHPVAGLL 318

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF-----------LGASRTGRWSGCVFPP 326
               + ++      +++ + M  +GRL GT                 +  GR S      
Sbjct: 319 ERARKVNKLRTTFASSVRDHM-VNGRLHGTFNQLRRQKDDESDGTAGAAYGRLSSEHPNL 377

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           Q  P                              +   RS  +  EG+     D +  E 
Sbjct: 378 QQQPARDE-------------------------FAMMWRSIYLPEEGQHWASNDYSQQEP 412

Query: 387 RVLAWMAGE------QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
           R+    A             +     D Y        +   A +   +R   K + L L 
Sbjct: 413 RMAVHYACLAKDLIGHKAWLSAIEARDKYRNDPNTDNHQMMADMAGIKRKDAKEIYLGLS 472

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y  G      M    GL                 ++  +      Q    E A      G
Sbjct: 473 YGMGGAK---MCRKLGL-------PTMMAVRGPRFQLFDVNSPEGQRLVAEGARRFEAAG 522

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              + +   + QK   + +L        +                              +
Sbjct: 523 PEGQALLDTFDQKVPFIKKLAKACEARAK--------------------------AVGYI 556

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
              SGR   +    +               Y +  K    ++Q  S D     M+   +A
Sbjct: 557 TTLSGRRCRFPKDKDGN-------------YDWTHKGLNRLIQGSSADQTKMAMVACAEA 603

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           G DI++ VHDEI     D     A+   H+M +       LP K +    + + 
Sbjct: 604 GLDIIIQVHDEIAFSVHD--MKEAAEAAHIMRTCTP--LELPSKVDVEIGQSWG 653


>gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 586

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 108/694 (15%), Positives = 201/694 (28%), Gaps = 152/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--HDPVMPQVLKEA 60
            +++D E    + +       Y  D  V L   G     + + D        + + LKE 
Sbjct: 23  YVYLDTE----VAVKDFEKVDYFND-KVRLIQIGTQ-EDIFVIDAFKVERDTLKEFLKEV 76

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-----SALKAVGEA 115
           LE+  +  V HN  F+   L    N D+       T + ++           +L AV   
Sbjct: 77  LESKGI--VGHNLKFDLKFLA--TNFDVYPKVVFDTFIASKILAKGDNSQKHSLSAVAVR 132

Query: 116 LKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-----TR 169
           L      K  +           E  E      +              +    +     T 
Sbjct: 133 LTDEEVDKTYQTSPWWVENLTKEQIEYSAKDIEVLRSIFREQVVRLNEEQTHLKSSGETY 192

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           ++F  + P+++ E        +I   G  +D      L +        L  E +   Y  
Sbjct: 193 KVFGVVNPVAALEMAFLPCLVSIELSGIPIDEKQLSNLIKNSKTTFQNLYIEFKRKYYID 252

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETT--CQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
                  +++  +L  + GL L    + +   Q V     +  P+   + + R       
Sbjct: 253 PF---SPQQVANFLTKKLGLKLPKTEKGSFSSQDVHLKPYEDKPEVKTLLSIRYEKKTL- 308

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             KL  L + +  + R+ G  + +GA  TGR S      QN+P+                
Sbjct: 309 -DKLEELSKYV-KNSRVYGEFKQIGA-STGRMSSYKPNLQNIPKN--------------- 350

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           ++S   A +G   ++AD + IE R+ A    ++  +KAF+  +D
Sbjct: 351 ----------------LKSIFRAPDGYLFIIADYSQIELRIAAEYTKDKSMIKAFQEKKD 394

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+  T +        ++TK++R + K +   L Y    K+  + A               
Sbjct: 395 LHKLTASVITGKDYQEITKEERNLAKAINFGLIYGISPKSLVEYAKNN------------ 442

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                      +     +  +   + +   + +  E    +   
Sbjct: 443 --------------------------YDIDITLSQAKTFHENFFNFYPKFKEWHENVKNY 476

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            E+        +                         GR L                   
Sbjct: 477 LEKHKFIQVETLL------------------------GRKL------------------- 493

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTDEFN 643
                         +Q    D+L   ++   K        +V  VHDEIV E    D   
Sbjct: 494 --IAYKFTDAVNYPIQGSGSDLLKMAVVLFYKSLLDLDAKVVNLVHDEIVVEVKQEDVDK 551

Query: 644 ASMLYHL-MTSNPSWAK-GLPLKAEGYESKRYRK 675
              +    M     +    +P++ E   SK + K
Sbjct: 552 VQEILSQSMEKAGRYLLKEVPVEFEINVSKSWSK 585


>gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E]
 gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I
 gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii]
 gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii]
 gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii]
 gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii]
 gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22]
          Length = 867

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 84/630 (13%), Positives = 179/630 (28%), Gaps = 149/630 (23%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           +   L N  +  + ++      +LK   N    I       ++  +              
Sbjct: 372 ILNLLTNKSIKKITYSLK---HLLKFYANQSHQITAIEDLELMQYALSAGL--------- 419

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
               QK    K L       E+   + +      +    L              +++   
Sbjct: 420 ---VQKNLFTKTLTKDNIINESARIVINFISLYKQTLLELQKNKA-------FRLYR--- 466

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                +    ++   +   G  VD    + L+     E  K+++E+ +L+     +    
Sbjct: 467 ---EIDLPTCFILDKMEKVGIKVDANYLNRLSDEFGTEILKIEEEIFALSGTK-FNIGSQ 522

Query: 237 EKLKTWLFLETGLHLEDL-----TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           ++L   LF +  L   +      + +T   +L    +       +     + ++      
Sbjct: 523 KQLGEILFKKMQLPSGNTLAKTSSYSTRAGILKKLSEDGYHIATLLLRWRQLTKLKNTYT 582

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++L + +N+  +   T     ++ TGR S      QN+P  S    +             
Sbjct: 583 DSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNVPIRSSDGNK------------- 629

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                       +R   IA EG KL+ AD + IE R+L+ +A      +AF   ED++  
Sbjct: 630 ------------IREAFIAEEGYKLISADYSQIELRILSHIANIDVLKQAFINKEDIHTQ 677

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T  + FN+   ++T + R   K +                    G++             
Sbjct: 678 TACQIFNLKKHELTSEHRRKAKAINF--------------GIIYGIS------------- 710

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                A +     +      K +  ++  V E   +        
Sbjct: 711 -----------------AFGLAKQLNVSNSTASEYIKQYFAEYKGVQEYMTQTKACA--- 750

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                    N  +    GR      + + +       +   R  
Sbjct: 751 -----------------------SRNGYVTNFFGRKCFIPLIHDKK-----LKQFAERAA 782

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC-ETPDTDEFNA 644
                     +Q  + DI+   M+   K          ++L +HDE++        E   
Sbjct: 783 INAP------IQGTNADIIKIAMIKLDKEIEERKLKTRLILQIHDELLFEVPEIEVEIVI 836

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            ++  +M    S    +P+  E      ++
Sbjct: 837 PIIKKIMEH--STNMNVPIITEIKAGNNWK 864


>gi|109948187|ref|YP_665415.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
 gi|109715408|emb|CAK00416.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba]
          Length = 887

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/613 (15%), Positives = 197/613 (32%), Gaps = 128/613 (20%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           I+ H+     + LKA + + +       T +LA             E LK   ++     
Sbjct: 391 IIGHDLKPLLSFLKAKYQVSLENIHIQDTQILAFLKNPEKV--GFDEVLKEYLKEDLILH 448

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           E I  F      E L   N   +    +   EY + +  +  ++    +     E     
Sbjct: 449 EKIKDFKTKSKAEKLERLNVELNA--LKRLCEYFEKE-GLEEDLLSLAK---EIEMPFMK 502

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +  +G+ +D      L Q    E   L++++  L      +    ++L   L+ + 
Sbjct: 503 VLMNMEFQGFKIDAPYFKRLEQEFKDELKVLERQILDLIG-EDFNLNSPKQLSGVLYEKL 561

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
            L  ++ + +T ++ L       P    +   R   ++ +   +  L+   + D ++  T
Sbjct: 562 NLP-KNKSHSTDEKNLLKIMDKHPSIPLILEYR-ELNKLSNTYITPLLRLKDKDDKIHTT 619

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
               G + TGR S      QN+P  S                              +R  
Sbjct: 620 FIQTG-TATGRLSSHSPNLQNIPVRSSKGL-------------------------LIRKG 653

Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            I+S +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F        K
Sbjct: 654 FISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSRALFG---ENSAK 710

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           ++R+I K +                    G+                             
Sbjct: 711 EKRSIAKSIN--------------FGLVYGMG---------------------------- 728

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
               + +          +   +A+ ++   + +  N + +   +T +             
Sbjct: 729 --SKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNNMQEEILKTSK------------- 773

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                             GR  V+ D      Y+            Y  +    I Q  +
Sbjct: 774 -------------AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNAIFQGSA 810

Query: 607 RDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKG 660
            D+L  GM+  ++         ++L VHDE++ E  + +       +  ++ +   +A  
Sbjct: 811 SDLLKLGMLKVSERFKNDSSVRLLLQVHDELIFEIEEKNALELQQEIQRILNNEV-YALR 869

Query: 661 LPLKAEGYESKRY 673
           +PL+   + +KR+
Sbjct: 870 VPLETSAFIAKRW 882


>gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
 gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri]
          Length = 968

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 101/773 (13%), Positives = 189/773 (24%), Gaps = 197/773 (25%)

Query: 44  LWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
             D       + +V KE  EN +V  V HN  F+R V++    + +       T+ +AR 
Sbjct: 246 WVDTLRGGEGVWEVFKEYFENPNVKKVWHNYSFDRHVVENHHGIKLAGFA-ADTMHMARL 304

Query: 103 NGLPSALK----------------AVGEALKLSSQKMEEGKELIARFCKGE-THECLYDR 145
                 L                    E L   ++ M   + +   F K +   +    +
Sbjct: 305 WNSNRGLDGGYSLEALSSSAEVMSDCAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGK 364

Query: 146 NKP--------NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------------- 182
                         E    + EY   D   T  + + LE                     
Sbjct: 365 TIILPPVEEIQEDVEQRDKWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYR 424

Query: 183 -----QELW--------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE-----S 224
                 + +         L   +   G  VD        ++   ++   ++         
Sbjct: 425 KCVTLWDFYTFYLAEFGNLLTQMERNGLLVDKEHLANAEKMALEDKRVAEEYFRTWASAK 484

Query: 225 LTYGLVSSSRCLEKLKTWLF--------LETGLHL-----------------------ED 253
                + +     +++  LF         + G+ L                         
Sbjct: 485 CEGAKLMNVGSGLQIRQLLFAGAKNKRRDKPGVELVREFTQESTEWLAWDAAGREGKAPK 544

Query: 254 LT-----------------------ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            T                             VL S       A  + +     S     K
Sbjct: 545 KTMKVALHGITVKPIPVQTFTATGLPAVSSVVLRSLAGKPGAARAIMDAWDTLS--DEEK 602

Query: 291 LNTLVEAMNSDGRLRGTLQFLG-------------ASRTGRWSGCVFPPQNLPRPSRSHE 337
               ++               G             A+     S  + P Q          
Sbjct: 603 SEEALKKACGGAFDAFGGGQEGVQACAAIDALNDVAAIDTLLSNFIIPLQGDDIRGPEGR 662

Query: 338 -------ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
                    +            +   L+     +R    A  G  LVVAD   +E R+LA
Sbjct: 663 VHGALNINTETGRLSARRPSLQNQPALEKDRYGIRKAFTAGPGNVLVVADYGQLELRLLA 722

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            MAG +   +AFE G D +  T    ++     + K         E+ L Y    +   +
Sbjct: 723 HMAGCKSMQEAFEAGGDFHSRTALGMYSNIKDAIAK--------GEVVLEYGEQEEGVDE 774

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                    +  A +    ++        NF     +     + +            + W
Sbjct: 775 --------KDRPALVKDVFASERRKAKVLNFSIAYGKTAHGLSKDWGTSLEEAANTVELW 826

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                 V +      +   +                            ++    GR    
Sbjct: 827 YSDRPEVRDWQEVQKKMAVE--------------------------KNLVRTLLGRVRNL 860

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDI 624
            D  +             R            +Q  + DI    M+   +       GY +
Sbjct: 861 PDASSKNEA---FKSHALRASINTP------IQGGAADIAMLAMLQIQRCPRLKELGYKL 911

Query: 625 VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSW---AKGLPLKAEGYESKRY 673
           ++ +HDE++ E P+  +  A  L    M +          + L  +G  +K +
Sbjct: 912 LMQIHDEVILEGPEEHKDEALALTKYHMENPFPGHVNLLDVALAVDGDYAKTW 964


>gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24]
          Length = 905

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 97/634 (15%), Positives = 199/634 (31%), Gaps = 144/634 (22%)

Query: 58  KEALEN--TDVT----IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            E LEN  + +     I+ H+     + LKA + + +   R   T +LA           
Sbjct: 393 LEFLENAFSQILQHAQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKV--G 450

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY-----CKGDVT 166
             E LK   ++     E I  F      +            A +   E+      + D+ 
Sbjct: 451 FDEVLKEYLKEDLIPHEKIKDF--KTKSKAEKSEQLNMELNALKRLCEHFEKGGLEEDLL 508

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           +              E     +   +  +G+ +D      L Q    E   L++++  L 
Sbjct: 509 ILAR---------DIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELNVLERQILDLI 559

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                +    ++L   L+ + GL  ++ + +T ++ L       P    +   R   ++ 
Sbjct: 560 GVD-FNLNSPKQLGEVLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYR-ELNKL 616

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
                  L+   + D ++  T    G + TGR S      QN+P  S             
Sbjct: 617 FNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL--------- 666

Query: 347 PTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                            +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G
Sbjct: 667 ----------------LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKG 710

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D+++ T    F     ++ K++R+I K +                    G+        
Sbjct: 711 RDIHLETSKALFG---EELAKEKRSIAKSIN--------------FGLVYGMG------- 746

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                    + +          +   +A+ ++   + +  N + 
Sbjct: 747 -----------------------SKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMR 783

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +   +T +                               GR  V+ D      Y+     
Sbjct: 784 EEILKTSK--------------------------AFTLLGRYRVF-DFNGVNDYIKGN-- 814

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTD 640
                  Y  +    I Q  + D+L  GM+  ++         ++L VHDE++ E  + +
Sbjct: 815 -------YLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKN 867

Query: 641 EFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  +  ++     +   +PL+   + +KR+
Sbjct: 868 APELQQEIQRILNDEV-YPLRVPLETSAFIAKRW 900


>gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 907

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 99/671 (14%), Positives = 177/671 (26%), Gaps = 130/671 (19%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHN 72
           +D    G     E       A    D     +D        +   +  L + D   V HN
Sbjct: 351 VDTWALGTGSVTE------VALAASDGKAAWFDPTELDEADETAFRSWLSDPDRPKVFHN 404

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
           +     VL       +       T + A              +  L +  +E     +A 
Sbjct: 405 AKGAMRVLAEH-GWSVAGVGM-DTALAAYLVKPGR------RSFDLDALSLEYLHRELAP 456

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLS--SKEQELWYL 188
               +                          D+  T    +            E     L
Sbjct: 457 AAAADGQLAFGADEGAEAEVLMVQAR--AILDLGETFESRLADVGAADLLRDMELPTSAL 514

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
              +   G   D      + Q+      +  +E  +       +    ++L+  LF E  
Sbjct: 515 LARMERHGIAADREHLQAMEQMFAGAVQQAVKEAHAAAG-REFNLGSPKQLQEVLFGELN 573

Query: 249 LHLEDLTETTCQRVLSSNK----KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
           L     T+T       +      +   +   +       ++  V  +  L++ + +DGR+
Sbjct: 574 LPKTKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADGRI 632

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             T     A+ TGR S      QN+P  +                              +
Sbjct: 633 HTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGRA-------------------------I 666

Query: 365 RSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           R   +  EG + L+ AD + IE RV+A ++ +    +AF +GEDL+ T  A+ F+V  + 
Sbjct: 667 RRGFVVGEGFESLMTADYSQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSA 726

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V  + R   K M   L Y            +  LN+         ++  E +    ++ R
Sbjct: 727 VDAEMRRKIKAMSYGLAYG-----LSAFGLSQQLNIEAAEARGLMDAYFERFGGVRDYLR 781

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
            + +            G             +S   +      +        G A    K 
Sbjct: 782 RVVDEARATGYTATLFGRRRYLP-----DLNSDNRQRREAAERMALNAPIQGTAADIVKI 836

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
             + +    ++                                                 
Sbjct: 837 AMLNVDKALRE------------------------------------------------- 847

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLP 662
               D L   M+          L VHDEIV E    +   A  L    M +       +P
Sbjct: 848 ---AD-LKSRML----------LQVHDEIVLEIAPGERAAAEELVRREMANAVQ--LRVP 891

Query: 663 LKAEGYESKRY 673
           L         +
Sbjct: 892 LGVSVGAGPDW 902


>gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3]
          Length = 952

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 97/667 (14%), Positives = 188/667 (28%), Gaps = 131/667 (19%)

Query: 21  ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTV 79
             +  ED   +       D      D        + +    L + +   V H        
Sbjct: 398 PGRIGEDAAALAI---VRDGAAAYIDLAGQDAESENVLAGWLRDPESPKVLHGFKAALKA 454

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
           L +   L++       T +             + E              L     +    
Sbjct: 455 LTSR-GLELE-GVVDDTSISGYLIQPDRRTYELAE---------LAQHHLNVGIPQATAK 503

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTV-----TREIFKRLEPLS--SKEQELWYLDQTI 192
               + +     EA           V         E+ +R       + E  +  +   +
Sbjct: 504 AGQLELSFDGEDEAAADALVQSAAVVQALSRYFEGELKERRAEELLSTLELPVSRVLADM 563

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  +D+A        +     +  ++  +     V +    ++L+T LF E  L   
Sbjct: 564 ELAGIGIDMARMDDQLADLARVIDQAQEQAFAAIGHEV-NLGSPKQLQTVLFEELQLPKT 622

Query: 253 DLTET---TCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              ++   T    L +  +K   + +        A++     L +L +++  DGR+  T 
Sbjct: 623 KKIKSGYTTDAASLKNLLEKTGHEFLVQLMAHREAAKLR-QMLESLKKSVAEDGRIHTTY 681

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR S      QN+P  S                              VR   
Sbjct: 682 AQNVAA-TGRISSNNPNLQNIPIRSEEGRR-------------------------VRGIF 715

Query: 369 IASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           +  EG + L+ AD + IE R++A ++G+Q  ++A++ GEDL+    +  F+V   +VT  
Sbjct: 716 VVGEGYECLLSADYSQIEMRIMAHLSGDQGLIQAYKDGEDLHRFVGSNIFHVPAEEVTSA 775

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R+  K M   L Y            +  L ++            + +    ++ R + +
Sbjct: 776 MRSKVKAMSYGLAYG-----LTSFGLSKQLEISVDEARTLMKEYFDRFGAVRDYLRGVVD 830

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                                                            A I  +RR +P
Sbjct: 831 QARVDGYT-----------------------------------------ATIEGRRRYLP 849

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
            +     +                 +  N     +    + R     G   E   Q ++ 
Sbjct: 850 DLTSTDRQ----------LRENAERIALNSPIQGSAADIIKRAML--GVHAELKAQGLA- 896

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                           ++L VHDE+V E    +      L    M +       +PL+ +
Sbjct: 897 --------------SRMLLQVHDELVLEVAPGERGAVEKLVTDQMAAAAD--LSVPLEVQ 940

Query: 667 GYESKRY 673
                 +
Sbjct: 941 IGVGPSW 947


>gi|308183570|ref|YP_003927697.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
 gi|308065755|gb|ADO07647.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4]
          Length = 893

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 97/667 (14%), Positives = 205/667 (30%), Gaps = 148/667 (22%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF F+D                    +     + L++  +  + H+     +
Sbjct: 351 KEKKVLALAFLFEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 407

Query: 79  VLKACFNLDIPIHRWICTLVLARS-----NGLPSALKAVGEALKLSSQKMEEGKELIARF 133
            LKA + + +   R   T +LA        G    LK   +   +  +K+++ K      
Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDGVLKEYLKEELIPHEKIKDFK------ 461

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                 +            A +   EY +        +          E     +   + 
Sbjct: 462 ---TKSKVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----EVETPFMKVLMGME 514

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
            +G+ +D      L Q    E   L++++  L      +    ++L   L+ +  L   +
Sbjct: 515 FQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVD-FNLNSPKQLSEILYEKLELPQ-N 572

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            + +T ++ L       P    +   R   ++        L+   + D ++  T    G 
Sbjct: 573 KSRSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 630

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           + TGR S      QN+P  S                              +R   IAS +
Sbjct: 631 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSK 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      + K++R+I 
Sbjct: 666 EYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIA 722

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G+                                 + 
Sbjct: 723 KSIN--------------FGLVYGMG------------------------------SKKL 738

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           +          +   +A+ ++   + +  N + +   +T +                   
Sbjct: 739 SETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK------------------- 779

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR  V+  VG N                Y  +    I Q  + D+L  
Sbjct: 780 -------AFTLLGRYRVFDFVGANDHIKGN----------YLREGVNAIFQGSASDLLKL 822

Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           GM+  ++         ++L VHDE++ E  + +       +  ++     +   +PL+  
Sbjct: 823 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETS 881

Query: 667 GYESKRY 673
            + +KR+
Sbjct: 882 AFVAKRW 888


>gi|294810416|ref|ZP_06769073.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
 gi|294442381|gb|EFG11191.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b]
          Length = 340

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 62/443 (13%), Positives = 130/443 (29%), Gaps = 119/443 (26%)

Query: 243 LFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +F +  +      T+T    T + VL S +   P   ++  +R    +     ++ L   
Sbjct: 1   MFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHR-GLKKLLGTYIDALPLL 59

Query: 298 MNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           +N   GR+  +      + TGR S      QN+P    + +E                  
Sbjct: 60  INPRTGRVHTSFNQ-TVTATGRLSSSNPNLQNIPIRDENGKE------------------ 100

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R   I  EG     AD + IE R++A ++ ++  + AF +  D++  T A+ 
Sbjct: 101 -------IRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKI 153

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           + +    V  D R   K                      G+++   A  +  +       
Sbjct: 154 YKIDLKDVDSDMRRKAKTANF--------------GIIYGISVFGLAERMNVD------- 192

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                                      + +   + + +  V    ++  Q  ++      
Sbjct: 193 -----------------------RKEAKELIDGYFETYPGVKAYMDKSIQVAQE------ 223

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                  +     R     D+ +  + +        R       
Sbjct: 224 --------------------KGYVETIFHRKRFLPDINSRNAVVRGY---AERNAINAP- 259

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                +Q  + DI+   M    +          ++L VHDE+    P  ++     +   
Sbjct: 260 -----IQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIE 314

Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673
                ++   +PLKA+    K +
Sbjct: 315 -EMEKAYRMHVPLKADCGWGKNW 336


>gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
 gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333]
          Length = 932

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/652 (15%), Positives = 190/652 (29%), Gaps = 142/652 (21%)

Query: 53  MPQVLKEALEN-------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           +P  L   +EN        D     +++   R  L A    ++         +L      
Sbjct: 389 VPDELTPQMENLLCNALAGDRKKTVYDAKSLRHALHAH-GWEMH-GAVTDIKMLDYLVNP 446

Query: 106 PSALKAVGEALK-LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW------RLFG 158
                      K L   +++E    I++  +  T +   + +  +  + W      +   
Sbjct: 447 DGNRTKFAGVTKRLLGWEIDEKPSDISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIY 506

Query: 159 EYCKGDVTVTRE---IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
            Y    +  T E    F++++ L   E  L Y+ + +   G  +D        Q +  E 
Sbjct: 507 AYALLQMQPTLEQLAHFRQVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEV 566

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNK--KLT 270
               Q         V +    ++L+  LF +  L     T+T      + L         
Sbjct: 567 AMAQQSAFDSIGREV-NLSSPKQLQEVLFTQLQLPKTKKTKTGYTTDAKALEELARYNPH 625

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    +  +R R     +  +  L E +  DGR+  T     A+ TGR S      QN+P
Sbjct: 626 PFLEALLYHRDRIKLLQI--VRNLRERVADDGRIHTTFGQTVAA-TGRLSSIDPNLQNIP 682

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVL 389
             +                              +R   +  +    L+ AD + IE R++
Sbjct: 683 ARTVDG-------------------------QKIREAFVPQKPYTALMTADYSQIEMRIM 717

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++G++  L AF +GEDL+ +  A  + V P +VT  QR+  K     L Y        
Sbjct: 718 AHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYG-----LS 772

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                  L                                              +++   
Sbjct: 773 AYGLAAQL---------------------------------------NISQRDAKQLMDT 793

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           + ++  +V E  N++                                        GR   
Sbjct: 794 YFERFGKVREYLNQIVATA--------------------------TRVGYTETMQGRRRY 827

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYD 623
             ++ +             R            +Q  + D++   M+         +    
Sbjct: 828 LPELRSTN---RNVADNARRAALNAP------IQGSAADLMKAAMLQVDADLRQEQLQSR 878

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE+V E    +      L    MT        +PL+        +R
Sbjct: 879 VLLQVHDELVLEVAPGETERLEALVRQAMTGVAK--LRVPLEVSVGIGPNWR 928


>gi|317181153|dbj|BAJ58939.1| DNA polymerase I [Helicobacter pylori F32]
          Length = 893

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 91/617 (14%), Positives = 187/617 (30%), Gaps = 136/617 (22%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEG 126
           I+ H+     + LKA + + +   R   T +LA             E +      K    
Sbjct: 397 IIGHDLKPLLSFLKANYQVPLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLK 448

Query: 127 KELI---ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           +ELI            +            A +   EY +        +          E 
Sbjct: 449 EELIPHEKIKDFKTKSKAEKSEQLSLELNALKRLCEYFEKGGLEEGLLALAR----EVET 504

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
               +   +  +G+ +D      L Q    E   L++++  L      +    ++L   L
Sbjct: 505 PFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEIL 563

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           + +  L  ++ + +T ++ L       P    +   R   ++        L+   + D +
Sbjct: 564 YEKLELP-KNKSRSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDK 621

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +  T    G + TGR S      QN+P  S                              
Sbjct: 622 IHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL-------------------------L 655

Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   IAS +   L+  D + IE R+LA  + ++  + AF  G D+++ T    F     
Sbjct: 656 IRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---E 712

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            + K++R+I K +                    G+                         
Sbjct: 713 DLAKEKRSIAKSIN--------------FGLVYGMG------------------------ 734

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                   + +          +   +A+ ++   + +  N + +   +T +         
Sbjct: 735 ------SKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK--------- 779

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                 GR  V+ D      Y+            Y  +    I 
Sbjct: 780 -----------------AFTLLGRYRVF-DFTGANDYIKGN---------YLREGVNAIF 812

Query: 603 QAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656
           Q  + D+L  GM+  ++         ++L VHDE++ E  + +       +  ++     
Sbjct: 813 QGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV- 871

Query: 657 WAKGLPLKAEGYESKRY 673
           +   +PL+   + +KR+
Sbjct: 872 YPLRVPLETSAFIAKRW 888


>gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018]
 gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
 gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019]
          Length = 1033

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 89/686 (12%), Positives = 202/686 (29%), Gaps = 152/686 (22%)

Query: 31   ILFAFGFDDHPVELWDCVHDP------VMPQVLKEALENTDVTIVAHNSYFERTVLK--A 82
            +L     ++  +   D ++         +   LK+ ++  + +IV H+      +LK   
Sbjct: 454  VLVMLSQNNAAIVYSDVLNGDSSEDCNKICHKLKDFIKMYESSIVLHDYKKHIALLKSLK 513

Query: 83   CFNLDIPIHRWICTLVLARSNGL---PSALKAVGE-ALKLSSQKMEEGKELIARFCKGET 138
              + +   +  + T + +           ++ + E  L +  +  +  +E          
Sbjct: 514  IVDNNYSFNPLLDTRLASYLIEPDFRNENIEDMAEHVLNIHVENEKSNEEPAQGELDFVL 573

Query: 139  HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-----------LSSKEQELWY 187
             +           +  +   +       +T  +  +              +   E  +  
Sbjct: 574  EDSDNPEELNQEEDKRKKQEKRILETA-ITIRLLAKQYAIKLDERKQTGLMVDVEMPVSR 632

Query: 188  LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
            + + + D G  VD++   ++      E  +  Q++         + +  ++L+  LF + 
Sbjct: 633  VLRGMEDAGAAVDMSRLVSMRDNFAAE-AQFAQKMALDVANKPINLQSPKQLQQLLFEDM 691

Query: 248  GLHLEDLTET----TCQRVLSSN-KKLTPQAIQ-----VFNNRMRASRSAVLKLNTLVEA 297
            GL     T++    T    L     K+ P                 ++   + + +L+++
Sbjct: 692  GLKPTRRTKSGSYTTNAEALQELYAKIDPDEKASQFLGALLKHRETNKLKQI-VQSLIDS 750

Query: 298  MN-SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                DGR+  T +   A+ TGR S      QN+P  +    E                  
Sbjct: 751  ARYEDGRIHTTFEQTIAA-TGRLSSSDPNLQNIPNRNVVGRE------------------ 791

Query: 357  LQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R+  I      +L+  D + +E R++A  + ++  +KAF++G D +    + 
Sbjct: 792  -------IRAAFIPGNQYDQLMSCDYSQVELRIMAHASADETLIKAFKSGVDFHKFVASL 844

Query: 416  SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
             + +   QV+ DQR+  K M   L Y               L+++  A            
Sbjct: 845  VYKIPVEQVSPDQRSHVKAMSYGLAYG-----LSTYGLAKQLSISPAA------------ 887

Query: 476  EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                                        E +K+ +      V +    L     +     
Sbjct: 888  ---------------------------AEVLKEKYFDTFGGVHDYLESLVDKARK----- 915

Query: 536  KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                                         GR   +  + +       +     R      
Sbjct: 916  ---------------------LGYTQTMFGRRRYFPKLNSTN---RASRESAERAALNAP 951

Query: 596  KLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                  +Q  + DI+   M+   K          ++L +HDE+V E    +      +  
Sbjct: 952  ------IQGSAADIMKLAMIQVDKDLREAKVKSRVILQIHDELVLEIAHGEADIVENIVK 1005

Query: 650  -LMTSNPSWAKGLPLKAEGYESKRYR 674
              M         +PL         ++
Sbjct: 1006 NAMEHTVE--LDVPLNVSTGLGADWQ 1029


>gi|281204189|gb|EFA78385.1| DNA-directed DNA polymerase I [Polysphondylium pallidum PN500]
          Length = 1359

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/666 (12%), Positives = 173/666 (25%), Gaps = 134/666 (20%)

Query: 54   PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG----LPSAL 109
               +   LE+ ++  V+ N+      +    N  +   R I   + A  +          
Sbjct: 767  LAFMVRLLEDDNIKKVSFNAKESIKPMLW-LNQWMQPSRLIDPKIAAWVHNTEAEEMKGF 825

Query: 110  KAVGEALKLSSQKMEE-------GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
            +       L   K  E        KEL +     +      D N        R       
Sbjct: 826  ELTFLYHHLVENKDYEKQINLPMIKELQSLDSNKDLVIINNDNNFSMFPNDLRNSSL--V 883

Query: 163  GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT----KL 218
                    +   L+    +E  +  +   +   G         T +  +         K 
Sbjct: 884  MIALEQLLLQLNLQAPFYQEMRVVPILSKMELHGITFSPETFRTCSSNLQTYVQNLQGKW 943

Query: 219  DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV-- 276
            + E +  +     S     ++K +L  +  + + +  + T    L    K  P    +  
Sbjct: 944  NTEFKKDSAK---SLSSPVQIKEFLLTQYKITVSNTGKQT----LVDLIKKYPDVQYIKD 996

Query: 277  FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRP--- 332
                   ++     +   ++ +  +       Q+    + TGR S      QNLPR    
Sbjct: 997  ILEYRHCNKILTTYVQPYLDIVKDEQAPSIHCQWIHTGTATGRLSCKQPNLQNLPRNALN 1056

Query: 333  ----SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
                    +              +     Q IS  VR    A EG  L+  D + IE R+
Sbjct: 1057 VNYNDEDGDSELADFNIDEDEDDNMGANNQTISLNVRDGFEAREGYTLIGLDYSQIELRI 1116

Query: 389  LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
            +   + +Q   + F+   D++             +VT  +R   K +   + Y  G  + 
Sbjct: 1117 MTHYSKDQKLEEYFKNEVDVFKHMAHHYLGKPVDKVTPTEREQTKRIIYGIMYGIGPHSL 1176

Query: 449  QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
             +                                                      +   
Sbjct: 1177 SQ--------------------------------------------ILKVSKERASQFIN 1192

Query: 509  AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
             +  K   +     E  +                                 +   +GR  
Sbjct: 1193 DFLNKFQSIRNYIEEEKKKIR--------------------------LKKFIKTIAGRRR 1226

Query: 569  VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---------- 618
            +   V +        + +  R+         +I+Q  + DI+ E M N            
Sbjct: 1227 LLPHVNSQDP---NQSHRALRQ------TVNSIIQGSASDIIKEAMFNIHVYLSQLSKEY 1277

Query: 619  -----KAGYDIVLTVHDEIVCETP-----DTDEFNASMLYHLMTSNPSWAKGLPLKAEGY 668
                      ++L +HDE++ E P     D +      +  +M S       +P+     
Sbjct: 1278 KSLDPHNDPRLLLQIHDELIYEIPDAMLNDKESEVCINIKRIMESVYQDDLTVPIAVTMS 1337

Query: 669  ESKRYR 674
            + K + 
Sbjct: 1338 KGKSWG 1343


>gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I
          Length = 891

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/664 (14%), Positives = 203/664 (30%), Gaps = 144/664 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF ++D                    +     + L++  +  + H+     +
Sbjct: 351 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 407

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEGKELI-ARFCKG 136
            LKA + + +   R   T +LA             E +      K    +ELI     K 
Sbjct: 408 FLKAKYQVPLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLKEELIPHEKIKD 459

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
              +            A +   EY +        +          E     +   +  +G
Sbjct: 460 FKTKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAR----EIETPFMKVLMGMEFQG 515

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
           + +D      L Q    E   L++++  L      +    ++L   L+ + GL  ++ + 
Sbjct: 516 FKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEVLYDKLGLP-KNKSH 573

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T ++ L       P    +   R   ++        L+   + D ++  T    G + T
Sbjct: 574 STDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TAT 631

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P  S                              +R   IAS +   
Sbjct: 632 GRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYC 666

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      + K++R+I K +
Sbjct: 667 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSI 723

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G+                                 + +  
Sbjct: 724 N--------------FGLVYGMG------------------------------SKKLSET 739

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                   +   +A+ ++   + +  N + +   +T +                      
Sbjct: 740 LNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK---------------------- 777

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                    GR  V+   G N                Y  +    I Q  + D+L  GM+
Sbjct: 778 ----AFTLLGRYRVFDFTGANDYVKGN----------YLREGVNAIFQGSASDLLKLGML 823

Query: 616 NATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669
             ++         ++L VHDE++ E  + +       +  ++     +   +PL+   + 
Sbjct: 824 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFI 882

Query: 670 SKRY 673
           +KR+
Sbjct: 883 AKRW 886


>gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1]
 gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1]
          Length = 584

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 117/708 (16%), Positives = 205/708 (28%), Gaps = 185/708 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             LFID E        K        +  + L   G +   + ++D    P   + LKE L
Sbjct: 23  KYLFIDTE-----VAVKSFEDIDFFNDKIRLIQIG-NYSKIFVYDMFRIPQFSEHLKELL 76

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEALK 117
           EN  V  + HN  F+   LK  F +   I     T++ ++          +L A+   L 
Sbjct: 77  ENKGV--IGHNLKFDIKFLKTNFGIFPQI--VFDTMIASQLLSEDSREKHSLSALSYRL- 131

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                            K +       +N             Y   DV V REIF  L  
Sbjct: 132 -----------TDNHLDKSQQRSPWGIKNLT------EEQLRYAAKDVQVLREIFPVLRD 174

Query: 178 LSSK------------------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
             ++                        E         I  RG  VD  L   + Q V  
Sbjct: 175 ELNRIETPHKATGKIHETFGLDNGVAVVEMAFVPQLADIELRGMPVDEKLLKDMLQKVST 234

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK--LTP 271
           +  +   +               +K+  WL  + GL L    + +     S+ ++     
Sbjct: 235 DYQREYIDFVRRYGVDPF---SPQKVTNWLTSKLGLKLPTTQKGSLSSQDSALRRYIDRE 291

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
           +  ++ + R    +  + KL  L +A   +GR+    + +GA  TGR +      QN+ R
Sbjct: 292 EVRKLLHIRSE--KKILDKLKEL-KAHLINGRIYTQFKQIGAP-TGRMASMRPNLQNITR 347

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                                           +R      EGKKL+VAD + IE R+ A 
Sbjct: 348 D-------------------------------LRVLFRPPEGKKLIVADYSQIELRIAAE 376

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
              ++  +KAF  G+DL+  T +        Q+TKD+R + K +   L Y    ++  + 
Sbjct: 377 YVNDETMIKAFSEGKDLHRFTASLILGKEYDQITKDERQMAKAINFGLIYGISPRSLMEY 436

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A                                       ++          +     + 
Sbjct: 437 AR--------------------------------------NSYGVDISLKDAQIFHSRFF 458

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           + +       + + +  ++  +     +  +R  V                         
Sbjct: 459 EVYKGFKSWHDRVKEYLKEHNKMVVYTLLGRRMVVRRFTE-------------------- 498

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM---NA-TKAGYDIVLT 627
                                         VQ    D+L   ++            IV  
Sbjct: 499 -------------------------AVNFPVQGTGSDLLKMAVVFFGKLKEDRDAGIVNL 533

Query: 628 VHDEIVCETPDTDEFNASMLY-HLMTSNPS-WAKGLPLKAEGYESKRY 673
           VHDEI+ E  ++       +    M        K +P++ E    + +
Sbjct: 534 VHDEIIVECSESIADEIRDILSESMLRAGKILLKKVPVEFEVEIVESW 581


>gi|298735561|ref|YP_003728082.1| DNA polymerase I [Helicobacter pylori B8]
 gi|298354746|emb|CBI65618.1| DNA polymerase I [Helicobacter pylori B8]
          Length = 893

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/632 (14%), Positives = 194/632 (30%), Gaps = 140/632 (22%)

Query: 58  KEALEN--TDVT----IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
            E LEN  + +     I+ H+     + LKA + + +   R   T +LA           
Sbjct: 381 LEFLENAFSQILQHACIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNP------ 434

Query: 112 VGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK--GDVTVT 168
             E +      K    ++LI      +                       C+      + 
Sbjct: 435 --EKVGFDEVLKEYLKEDLIPHEKIKDFKTKSKAEKLELLSVELNALKRLCEYFEKGGLE 492

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
             +          E     +   +  +G+ +DV     L Q    E   L++++  L   
Sbjct: 493 EGLLALAR---GVETPFMKVLMGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGV 549

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              +    ++L   L+ + GL  ++ + +T ++ L       P    +   R   ++   
Sbjct: 550 D-FNLNSPKQLGEVLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIALILEYR-ELNKLFN 606

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                L+   + D ++  T    G + TGR S      QN+P  S               
Sbjct: 607 TYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL----------- 654

Query: 349 SITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D
Sbjct: 655 --------------LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRD 700

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +++ T    F      + K++R+I K +                    G+          
Sbjct: 701 IHLETSKALFG---EDLAKEKRSIAKSIN--------------FGLVYGMG--------- 734

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                  + +          +   +A+ ++   + +  N + + 
Sbjct: 735 ---------------------SKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMKEE 773

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +T +                               GR  V+ D      Y+       
Sbjct: 774 ILKTSK--------------------------AFTLLGRYRVF-DFNGVNDYVKGN---- 802

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEF 642
                Y  +    I Q  + D+L  GM+  ++         ++L VHDE++ E  + +  
Sbjct: 803 -----YLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAP 857

Query: 643 NA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                +  ++     +   +PL+   + +KR+
Sbjct: 858 ELQQEIQRILNDEV-YPLRVPLETSAFIAKRW 888


>gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
 gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695]
          Length = 892

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/664 (14%), Positives = 203/664 (30%), Gaps = 144/664 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF ++D                    +     + L++  +  + H+     +
Sbjct: 352 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 408

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEGKELI-ARFCKG 136
            LKA + + +   R   T +LA             E +      K    +ELI     K 
Sbjct: 409 FLKAKYQVPLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLKEELIPHEKIKD 460

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
              +            A +   EY +        +          E     +   +  +G
Sbjct: 461 FKTKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAR----EIETPFMKVLMGMEFQG 516

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
           + +D      L Q    E   L++++  L      +    ++L   L+ + GL  ++ + 
Sbjct: 517 FKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEVLYDKLGLP-KNKSH 574

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T ++ L       P    +   R   ++        L+   + D ++  T    G + T
Sbjct: 575 STDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TAT 632

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P  S                              +R   IAS +   
Sbjct: 633 GRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYC 667

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      + K++R+I K +
Sbjct: 668 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSI 724

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G+                                 + +  
Sbjct: 725 N--------------FGLVYGMG------------------------------SKKLSET 740

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                   +   +A+ ++   + +  N + +   +T +                      
Sbjct: 741 LNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK---------------------- 778

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                    GR  V+   G N                Y  +    I Q  + D+L  GM+
Sbjct: 779 ----AFTLLGRYRVFDFTGANDYVKGN----------YLREGVNAIFQGSASDLLKLGML 824

Query: 616 NATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669
             ++         ++L VHDE++ E  + +       +  ++     +   +PL+   + 
Sbjct: 825 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFI 883

Query: 670 SKRY 673
           +KR+
Sbjct: 884 AKRW 887


>gi|15612428|ref|NP_224081.1| DNA polymerase I [Helicobacter pylori J99]
 gi|9789748|sp|Q9ZJE9|DPO1_HELPJ RecName: Full=DNA polymerase I; Short=POL I
 gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori J99]
          Length = 897

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 92/619 (14%), Positives = 190/619 (30%), Gaps = 140/619 (22%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEG 126
           I+ H+     + LKA + + +   R   T +LA            V +      ++    
Sbjct: 401 IIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEY---LKEDLIP 457

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEY-----CKGDVTVTREIFKRLEPLSSK 181
            E I  F      +            A +   EY      + D+                
Sbjct: 458 HEKIKDF--KTKSKAEKSELLSMELNALKRLCEYFEKGGLEEDLLTLAR---------DI 506

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +  +G+ +D      L Q    E   L++++  L      +    ++L  
Sbjct: 507 ETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELNVLERQILDLIGVD-FNLNSPKQLGE 565

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            L+ + GL  ++ + +T ++ L       P    +   R   ++        L+   + D
Sbjct: 566 VLYDKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYR-ELNKLFNTYTTPLLRLKDKD 623

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            ++  T    G + TGR S      QN+P  S                            
Sbjct: 624 DKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL------------------------ 658

Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F   
Sbjct: 659 -LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG-- 715

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              + K++R+I K +                    G+                       
Sbjct: 716 -EDLAKEKRSIAKSIN--------------FGLVYGMG---------------------- 738

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                     + +       +  +   +A+ ++   + +  N + +   +T +       
Sbjct: 739 --------SKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSK------- 783

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                   GR  V+   G N                Y  +    
Sbjct: 784 -------------------AFTLLGRYRVFDFTGVNDYVKGN----------YLREGVNA 814

Query: 601 IVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN 654
           I Q  + D+L  GM+  ++         ++L VHDE++ E  + +       +  ++   
Sbjct: 815 IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDE 874

Query: 655 PSWAKGLPLKAEGYESKRY 673
             +   +PL+   + +KR+
Sbjct: 875 V-YPLRVPLETSAFIAKRW 892


>gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec]
 gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec]
          Length = 911

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 98/644 (15%), Positives = 182/644 (28%), Gaps = 129/644 (20%)

Query: 44  LWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
             D         +   L + L + D     H+       L       +       T + A
Sbjct: 378 WIDPTQLTAGDSV--ALGDWLADPDRAKAGHDLKGPMLALAEA-GFTLA-GVTSDTALAA 433

Query: 101 RSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                      L  +            E K       +                   R  
Sbjct: 434 YLALPGQRSFDLADLALRYLH-----RELKSDAPSNGQLTLDGSGEADEAEADAIRARAA 488

Query: 158 GEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            E     D  + R        L   E  L  +  T+   G   D      L +    E +
Sbjct: 489 LELADALDGDLERR--SAARLLREMELPLVTILATMERAGIAADEDHLLELQKHYGGEVS 546

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNK--KLTP 271
            +  +   +      +    ++L+  LF E  L      +T   T    L+        P
Sbjct: 547 DVAAQAHGIVGRT-FNLGSPKQLQQILFDELALPKTKRIKTGYTTDADALAWLATQSDHP 605

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               + ++R   +R     +++L+  ++  GR+  T   + A+ TGR S      QN+P 
Sbjct: 606 LIPVLLHHR-DVARLK-TVVDSLIPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNIPI 662

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLA 390
            +                              +R   +  +G   L+ AD + IE R++A
Sbjct: 663 RTPQGR-------------------------QIRQAFVVGQGYETLLTADYSQIEMRLMA 697

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G+   ++AF +GEDL+    A++F +  ++V  + R   K M   L Y         
Sbjct: 698 HLSGDAGLIEAFASGEDLHSFVAAQAFGLPVSEVDPELRRRIKAMSYGLAYG-----LSA 752

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                 L +       + ++    +    +F R + +        +  +G          
Sbjct: 753 FGLAGQLGIAPDEAREQMDAYFARFGGVRDFLRGVVDQARRDGYTETIMGR--------- 803

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
           R+    ++    +  Q  E+   N              +         I ML  GR+L  
Sbjct: 804 RRYLPDLTSDNTQRRQMAERMALN------------APIQGSAADIIKIAMLGVGRALRS 851

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
           RD+ +                                                ++L VHD
Sbjct: 852 RDLSS-----------------------------------------------RLLLQVHD 864

Query: 631 EIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    +      L    M S       +PL+      + +
Sbjct: 865 ELVLEIAPGERAEVEALVRAEMGSAYE--MSVPLEVSVGAGRTW 906


>gi|255017642|ref|ZP_05289768.1| DNA polymerase I [Listeria monocytogenes FSL F2-515]
          Length = 316

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 52/418 (12%), Positives = 112/418 (26%), Gaps = 115/418 (27%)

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
            S         ++   R    +     +  L++  + +     T      ++TGR S   
Sbjct: 2   ESLSGKHAIIDEILLYRQ-LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVD 60

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLA 382
              QN+P       +                         +R   +    G K+  AD +
Sbjct: 61  PNLQNIPIRLEEGRK-------------------------IRQVFVPSKPGWKMFSADYS 95

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            +E RVLA ++ ++  + AF+   D++  T    F+V   +V    R   K +       
Sbjct: 96  QVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVN------ 149

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                        G++    +                                       
Sbjct: 150 --------FGIVYGISDYGLSQ------------------------------NLGITRKE 171

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +     +   +  V E   ++ +  ++  +     I                       
Sbjct: 172 AKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH--------------------- 208

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617
              R     ++ +             R            +Q  + DI+ + M+       
Sbjct: 209 ---RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMSERLV 256

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             K    ++L VHDE++ E P+ +      +   +M +       +PLK +      +
Sbjct: 257 SEKLKAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 312


>gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group]
          Length = 1033

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 109/806 (13%), Positives = 202/806 (25%), Gaps = 197/806 (24%)

Query: 5    FIDFETRSPIDLTKCGICKYAEDVCVILFAFG---------FDDHPVELWD--CVHDPVM 53
              D E  + ID+ +           VI F+           F +    +W         +
Sbjct: 284  ACDTE-VANIDVKEETP---VGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGGRDV 339

Query: 54   PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106
                    E+  +  V HN  F+  V++ C    I +  +   T+ LAR           
Sbjct: 340  LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRTDGG 396

Query: 107  SALKAVGEALKLSS----QKMEEGKELIA--RFCKGETHECLYDRNKPNHR------EAW 154
             +L+ +    ++         + GK  +      K    +    +            E  
Sbjct: 397  YSLEGLTNDHRVMDAVVKDIPKTGKVSMKTIFGRKKVRKDGSEGKTISIEPVEKLQREDR 456

Query: 155  RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194
             L+  Y   D   T ++++ L+                          +    L   +  
Sbjct: 457  ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDCPRGTMYDFYEEYWRPFGALLVKMET 516

Query: 195  RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244
             G  VD A    + +    ER     +               +     +++   F     
Sbjct: 517  EGVLVDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIEN 576

Query: 245  -LETGLHLE-DLT-------------ETTCQRVLSSNKKLTPQAIQVFN----------- 278
              + G       T             + T +        +                    
Sbjct: 577  RNKRGETWPQSKTFKVPNDEGITTEGKKTPKSRTIKLFTIVEDLKIDMFTPTGWPSVSGD 636

Query: 279  -NRMRASRS---AVLKLNT------------LVEAMNSDGRLRGT-LQFLGASRTGR--- 318
              R  A +     + K++             L E    D  L GT  +  G    GR   
Sbjct: 637  VLRSLAGKIPTNRIYKIDDGQEFDEDGSSLELPEQDIEDTSLYGTAYEAFGGGNKGREAC 696

Query: 319  ---------------WSGCVFPPQNLPRPSRSHE-------ELDQIITHLPTSITSDPDP 356
                            SG + P Q      +            +       T    +   
Sbjct: 697  HAIAALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPA 756

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
            L+     +R   +A+ G  L+VAD   +E R+LA +   +  L+AF+ G D +  T    
Sbjct: 757  LEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNM 816

Query: 417  FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            +      V +                   K   +     G        L     A     
Sbjct: 817  YQHVRDAVEE------------------KKVLLEWHPQPGQEKPPVPLLKDAFGAERRKA 858

Query: 477  DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
               NF     +     + +            K W +    VS    +      +  E   
Sbjct: 859  KMLNFSIAYGKTAVGLSWDWKVEVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVY- 917

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                        GRS  + ++ +             R       
Sbjct: 918  -------------------------TLLGRSRQFPNMTHAGPGQKGHV---ERAAINAP- 948

Query: 597  LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASML-YH 649
                 VQ  + D+    M+   +       G+ ++L VHDE++ E P      A  +   
Sbjct: 949  -----VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVE 1003

Query: 650  LMTSNP--SWAKGLPLKAEGYESKRY 673
             M+     +    + L  +   +K +
Sbjct: 1004 CMSKPFYGTNILKVDLAVDAKYAKSW 1029


>gi|208435338|ref|YP_002267004.1| DNA polymerase I [Helicobacter pylori G27]
 gi|208433267|gb|ACI28138.1| DNA polymerase I [Helicobacter pylori G27]
          Length = 905

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 92/665 (13%), Positives = 201/665 (30%), Gaps = 144/665 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           +D  ++  AF ++D                    +     + L++  +  + H+     +
Sbjct: 363 KDKKILALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFSQILQHACI--IGHDLKPLLS 419

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGE 137
            LKA + + +   R   T +LA             E +      K    ++LI      +
Sbjct: 420 FLKAKYQVSLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLKEDLIPHEKIKD 471

Query: 138 THECLYDRNKPNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
                                  C+      +  ++          E     +   +  +
Sbjct: 472 FKTKSKVEKLELLSVELNALKRLCEYFEKGGLEEDLLTLAR---DIETPFMKVLMGMEFQ 528

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G+ +D      L Q    E   L+ ++  L      +    ++L   L+ + GL  ++ +
Sbjct: 529 GFKIDAPYFKHLEQEFKNELHVLEHQILDLIGVD-FNLNSPKQLSEVLYEKLGLP-KNKS 586

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T ++ L       P    +   R   ++        L+   + D ++  T    G + 
Sbjct: 587 HSTDEKNLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TA 644

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P  S                              +R   IAS +  
Sbjct: 645 TGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEY 679

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      + K++R+I K 
Sbjct: 680 CLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKEKRSIAKS 736

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +                    G+                                 + + 
Sbjct: 737 IN--------------FGLVYGMG------------------------------SKKLSE 752

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
                 +  +   +A+ ++   + +  N + +   +T +                     
Sbjct: 753 TLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK--------------------- 791

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                     GR  V+ D      Y+            Y  +    I Q  + D+L  GM
Sbjct: 792 -----AFTLLGRYRVF-DFTGVNDYIKGN---------YLREGVNAIFQGSASDLLKLGM 836

Query: 615 MNATKA-----GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGY 668
           +  ++         ++L VHDE++ E  + +       +  ++     +   +PL+   +
Sbjct: 837 LKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPKLQREIQRILNDEV-YPLRVPLETSAF 895

Query: 669 ESKRY 673
            + R+
Sbjct: 896 VANRW 900


>gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 908

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 91/660 (13%), Positives = 169/660 (25%), Gaps = 140/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            A      P   +D        +      L +     V H++     V        I   
Sbjct: 365 VALATSAGPAAWFDPAELDEADERAFAAWLADAGRPKVFHDAKSAMRVFAEH-GWSIEGV 423

Query: 92  RWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
               T + A           L A+                           +        
Sbjct: 424 TM-DTALAAYLVKPGRRSFDLDALSLEYLH------------RELAPAAVADGQLAFGAD 470

Query: 149 NHREAWRLFGE-YCKGDVTVTR--EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVAL 203
              EA  L  +     D+       + +          E     L   +   G   D A 
Sbjct: 471 EGAEAEALMVQARAILDLGEAFGSRLEEVGAADLLRDMELPTSALLARMERHGIAADRAH 530

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQ 260
              + Q+      +  +E  +       +    ++L+  LF E  L     T+T   T  
Sbjct: 531 LEAMEQMFAGAVQQAVKEAHAAAGH-EFNLGSPKQLQEVLFGELALPKTKRTKTGYTTDA 589

Query: 261 RVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             L+     T  +   +       ++  V  +  L++ + +DGR+  T     A+ TGR 
Sbjct: 590 DALAWLATQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRL 647

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378
           S      QN+P  +                              +R   +  EG + L+ 
Sbjct: 648 SSTDPNLQNIPVRTDEGRA-------------------------IRRGFVVGEGFESLLT 682

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE RV+A ++ ++  ++AF +GEDL+ T  A+ F V  + V  + R   K M   
Sbjct: 683 ADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAAQVFAVERSAVDAEMRRKIKAMSYG 742

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y            +  LN+         ++  E +    ++ R + +           
Sbjct: 743 LAYG-----LSAFGLSQQLNIEAAEARALMDAYFERYGGVRDYLRRVVDEARATGYTATL 797

Query: 499 IGTACERVKKAWRQKHSRV----SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            G          R+    +     +      +        G A    K   + +    ++
Sbjct: 798 FGR---------RRYLPDLSSDNRQRREAAERMALNAPIQGTAADIVKIAMLKVDGALRE 848

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                                                                D+ +  +
Sbjct: 849 T----------------------------------------------------DLASRML 856

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           +                IV E    +      L    M         +PL         +
Sbjct: 857 LQVHDE-----------IVLEVAPGERPAVEELVRREMADAVR--LRVPLGVSVGVGPNW 903


>gi|307638123|gb|ADN80573.1| DNA polymerase I [Helicobacter pylori 908]
          Length = 889

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 91/619 (14%), Positives = 192/619 (31%), Gaps = 142/619 (22%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEG 126
           I+ H+     + LKA + + +   R   T +LA             E +      K    
Sbjct: 395 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNP--------EKVGFDEALKEYLK 446

Query: 127 KELIA-RFCKGETHECLYDRNKPNHREAWRLFGEY----CKGDVTVTREIFKRLEPLSSK 181
           ++L++    K    +            A +   EY       +  +T             
Sbjct: 447 EDLVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLA--------RDI 498

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +  +G+ +D      L Q    E   L++++  L      +    ++L  
Sbjct: 499 ETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVD-FNLNSPKQLGE 557

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            L+ + GL  ++ + +T ++ L       P    +   R   ++        L+   + D
Sbjct: 558 VLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYR-ELNKLFNTYTTPLLRLKDKD 615

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            ++  T    G + TGR S      QN+P  S                            
Sbjct: 616 DKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL------------------------ 650

Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F   
Sbjct: 651 -LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG-- 707

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              + K++R+I K +                    G+                       
Sbjct: 708 -EDLAKEKRSIAKSIN--------------FGLVYGMG---------------------- 730

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                     + +       +  +   +A+ ++   + +  N + +   +T +       
Sbjct: 731 --------SKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSK------- 775

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                   GR  V+ D      Y+            Y  +    
Sbjct: 776 -------------------AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNA 806

Query: 601 IVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN 654
           I Q  + D+L  GM+  ++         ++L VHDE++ E  + +       +  ++   
Sbjct: 807 IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDE 866

Query: 655 PSWAKGLPLKAEGYESKRY 673
             +   +PL+   + + R+
Sbjct: 867 V-YPLRVPLETSAFVANRW 884


>gi|261838745|gb|ACX98511.1| DNA polymerase I [Helicobacter pylori 51]
          Length = 885

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 94/667 (14%), Positives = 204/667 (30%), Gaps = 148/667 (22%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF ++D                    +     + L++  +  + H+     +
Sbjct: 343 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 399

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQKMEEGKELIARF 133
            LKA + + +   R   T +LA            V +       +  +K+++ K      
Sbjct: 400 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFK------ 453

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                 +            A R   EY +        +          E     +   + 
Sbjct: 454 ---TKSKAGKLEQLDRELNALRRLCEYFEKGGLEEGLLALAR----EVETPFMKVLMGME 506

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
            +G+ +D      L Q    E   L++++  L      +    ++L   L+ +  L  ++
Sbjct: 507 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGAD-FNLNSPKQLSEILYEKLELP-KN 564

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            + +T ++ L       P    +   R   ++        L+   + D ++  T    G 
Sbjct: 565 KSHSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 622

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           + TGR S      QN+P  S                              +R   IAS +
Sbjct: 623 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSK 657

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+  D + IE R+LA  + ++  + AF  G D+++ T    F      + K++R+I 
Sbjct: 658 EYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIA 714

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G+                                 + 
Sbjct: 715 KSIN--------------FGLVYGMG------------------------------SKKL 730

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           +       +  +   +A+ ++   + +  N + +   +T +                   
Sbjct: 731 SETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK------------------- 771

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR  V+ D      Y+            Y  +    I Q  + D+L  
Sbjct: 772 -------AFTLLGRYRVF-DFTGANDYIKGN---------YLREGVNAIFQGSASDLLKL 814

Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           GM+  ++         ++L VHDE++ E  + +       +  ++     +   +PL+  
Sbjct: 815 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETS 873

Query: 667 GYESKRY 673
            + +KR+
Sbjct: 874 AFIAKRW 880


>gi|149408291|ref|YP_001294570.1| hypothetical protein ORF062 [Pseudomonas phage M6]
          Length = 664

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 101/714 (14%), Positives = 194/714 (27%), Gaps = 132/714 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHPVELWDCVH--DPVMP-QVL 57
             + ID ETR   DL K G       +  +   +F  +D P       H     +P + +
Sbjct: 31  KRVAIDCETR-DPDLRKLGPGAGRRPNSYITGISFAIEDGPGGYLPIRHEGGGNLPLEGV 89

Query: 58  KEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARS---NGLPSAL 109
              L           V  N  ++   L     ++    R+     +            ++
Sbjct: 90  LAYLRAQAKVFTGDLVGANLPYDLDFLA-GDGIEFERVRYFRDIQIADPLICELHDSYSM 148

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           +A+ E           GK+      +    +   D  K       +  G+Y + D  +  
Sbjct: 149 QAIAERWGF------HGKD--EALLRAAAVDYGIDPKKDMWMLPAKFVGKYAEEDTRLPL 200

Query: 170 EIFKRLEPLSSKEQEL---------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            I +R E    ++              +   +  RG  +D      + +    + T+   
Sbjct: 201 NILRRQEREIDEQDLWGVYNLESKLLPILTGLRRRGVRIDCDRLDMIERWALEKETEALA 260

Query: 221 ELESLTYGLVSSSRCLE-KLKTWLFLETGLHLEDL--TETTCQRVLSSNKKLTPQAIQVF 277
           ++ S+T   ++     + ++        G+ L      +    + L     +      + 
Sbjct: 261 QVRSITGHRIAVGDVWKPEVIAPALEHIGIKLNKTSQGKPNIDKEL--LGSIDHPVADLL 318

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF-----------LGASRTGRWSGCVFPP 326
               + ++      +++ + M  +GRL GT                 +  GR S      
Sbjct: 319 ERARKVNKLRTTFASSVRDHM-VNGRLHGTFNQLRRQKDDESDGTAGAAYGRLSSEHPNL 377

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           Q  P                              +   R+  +  EG+     D +  E 
Sbjct: 378 QQQPARDE-------------------------FAMMWRAIYLPEEGQHWASNDYSQQEP 412

Query: 387 RVLAWMAGEQWK------LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
           R+    A             +     D Y        +   A +   +R   K + L L 
Sbjct: 413 RMAVHYACLAKDLIGHQAWLSAIEARDKYRNDPNTDNHQMMADMAGIKRKDAKEIYLGLS 472

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y  G      M    GL                 ++  +      Q    E A      G
Sbjct: 473 YGMGGAK---MCRKLGL-------PTMMAVRGPRFQLFDVNSPEGQRLVAEGARRFEAAG 522

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              + +   +  K   + +L        +                              +
Sbjct: 523 PEGQALLDTFDHKVPFIKKLAKACEARAK--------------------------AVGYI 556

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
              SGR   +    +               Y +  K    ++Q  S D     M+   +A
Sbjct: 557 TTLSGRRCRFPKDKDGN-------------YDWTHKGLNRLIQGSSADQTKMAMVACAEA 603

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           G DI++ VHDEI     D     A+   H+M +       LP K +    + + 
Sbjct: 604 GLDIIIQVHDEIAFSVHD--MKEAAEAAHIMRTCTP--LELPSKVDVEIGQSWG 653


>gi|325996723|gb|ADZ52128.1| DNA polymerase I [Helicobacter pylori 2018]
          Length = 889

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 91/619 (14%), Positives = 192/619 (31%), Gaps = 142/619 (22%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEG 126
           I+ H+     + LKA + + +   R   T +LA             E +      K    
Sbjct: 395 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNP--------EKVGFDEALKEYLK 446

Query: 127 KELIA-RFCKGETHECLYDRNKPNHREAWRLFGEY----CKGDVTVTREIFKRLEPLSSK 181
           ++L++    K    +            A +   EY       +  +T             
Sbjct: 447 EDLVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLA--------RDI 498

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +  +G+ +D      L Q    E   L++++  L      +    ++L  
Sbjct: 499 ETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVD-FNLNSPKQLGE 557

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            L+ + GL  ++ + +T ++ L       P    +   R   ++        L+   + D
Sbjct: 558 VLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYR-ELNKLFNTYTTPLLRLKDKD 615

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            ++  T    G + TGR S      QN+P  S                            
Sbjct: 616 DKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL------------------------ 650

Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F   
Sbjct: 651 -LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG-- 707

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              + K++R+I K +                    G+                       
Sbjct: 708 -EDLAKEKRSIAKSIN--------------FGLVYGMG---------------------- 730

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                     + +       +  +   +A+ ++   + +  N + +   +T +       
Sbjct: 731 --------SKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSK------- 775

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                   GR  V+ D      Y+            Y  +    
Sbjct: 776 -------------------AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNA 806

Query: 601 IVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN 654
           I Q  + D+L  GM+  ++         ++L VHDE++ E  + +       +  ++   
Sbjct: 807 IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDE 866

Query: 655 PSWAKGLPLKAEGYESKRY 673
             +   +PL+   + + R+
Sbjct: 867 V-YPLRVPLETSAFVANRW 884


>gi|325998317|gb|ADZ50525.1| DNA polymerase I [Helicobacter pylori 2017]
          Length = 889

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 91/619 (14%), Positives = 192/619 (31%), Gaps = 142/619 (22%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEG 126
           I+ H+     + LKA + + +   R   T +LA             E +      K    
Sbjct: 395 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNP--------EKVGFDEALKEYLK 446

Query: 127 KELIA-RFCKGETHECLYDRNKPNHREAWRLFGEY----CKGDVTVTREIFKRLEPLSSK 181
           ++L++    K    +            A +   EY       +  +T             
Sbjct: 447 EDLVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLA--------RDI 498

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E     +   +  +G+ +D      L Q    E   L++++  L      +    ++L  
Sbjct: 499 ETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVD-FNLNSPKQLGE 557

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            L+ + GL  ++ + +T ++ L       P    +   R   ++        L+   + D
Sbjct: 558 VLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYR-ELNKLFNTYTTPLLRLKDKD 615

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            ++  T    G + TGR S      QN+P  S                            
Sbjct: 616 DKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL------------------------ 650

Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F   
Sbjct: 651 -LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG-- 707

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              + K++R+I K +                    G+                       
Sbjct: 708 -EDLAKEKRSIAKSIN--------------FGLVYGMG---------------------- 730

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                     + +       +  +   +A+ ++   + +  N + +   +T +       
Sbjct: 731 --------SKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSK------- 775

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                   GR  V+ D      Y+            Y  +    
Sbjct: 776 -------------------AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNA 806

Query: 601 IVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN 654
           I Q  + D+L  GM+  ++         ++L VHDE++ E  + +       +  ++   
Sbjct: 807 IFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDE 866

Query: 655 PSWAKGLPLKAEGYESKRY 673
             +   +PL+   + + R+
Sbjct: 867 V-YPLRVPLETSAFVANRW 884


>gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75]
          Length = 893

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 97/630 (15%), Positives = 195/630 (30%), Gaps = 136/630 (21%)

Query: 58  KEALENT------DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALK 110
            E LEN        V I+ H+     + LKA + + +   R   T +LA           
Sbjct: 381 LEFLENAFSQMLQHVQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD 440

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            V +   L  + +    E I  F      E            A +   EY      +   
Sbjct: 441 EVLKEY-LKEEWIP--HEKIKDFKIKSKVE--KLEQLDMELNALKRLCEYF-EKGGLEEN 494

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +    +     E     +   +  +G+ +D      L Q    E   L++++  L     
Sbjct: 495 LLSLAK---EVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVD- 550

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++L   L+ +  L  ++ + +T ++ L       P    +   R   ++     
Sbjct: 551 FNLNSPKQLGEILYEKLKLP-KNKSHSTDEKNLLKILDKHPSIPLILEYR-ELNKLFNTY 608

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              L+   + D ++  T    G + TGR S      QN+P  S                 
Sbjct: 609 TTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL------------- 654

Query: 351 TSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D++
Sbjct: 655 ------------LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIH 702

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           + T    F      + K++R+I K +                    G+            
Sbjct: 703 LETSKALFG---GDLAKEKRSIAKSIN--------------FGLVYGMG----------- 734

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                + +          +   +A+ ++   + +  N + +   
Sbjct: 735 -------------------SKKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEIL 775

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +T +                               GR  V+ D      Y+         
Sbjct: 776 KTSK--------------------------AFTLLGRYRVF-DFTGANDYIKGN------ 802

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA 644
              Y  +    I Q  + D+L  GM+  ++         ++L VHDE++ E  + +    
Sbjct: 803 ---YLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALEL 859

Query: 645 -SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              +  ++     +   +PL+   + +KR+
Sbjct: 860 QQEIQRILNDEV-YPLRVPLETSAFVAKRW 888


>gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium]
          Length = 647

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 96/329 (29%), Gaps = 56/329 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------P 51
               ID ET S                 ++ F+  FD +        HD           
Sbjct: 346 KRFAIDTETTSLD----------YRIAEMVGFSVAFDANDAYYIPLAHDYEGAPEQLNRD 395

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
            + Q +K  LE+  V  + H+  ++  + +    + +    +  T++ +           
Sbjct: 396 AIIQQIKPILEDPSVEKIGHHLKYDAHIFENH-GIHLQ-GWYFDTMLASYVLNAVTTRHG 453

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V                L       E       + K  ++      G Y   D  VT
Sbjct: 454 MDDVARVY------------LSHLTTTFEQVAGKGAKQKTFNQIEIETAGHYAAEDAHVT 501

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHTLNQIVDVERTK 217
             +++ LE    +  EL  +   I              G  +D++    L+         
Sbjct: 502 YRLYEVLERKLKEIPELINILHHIEMPVASVLATMEENGIELDLSFLDQLSVDFANTIQN 561

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQA 273
           L+ ++  +      +    +++   LF + GL     T     +T + VL       P  
Sbjct: 562 LENQIIEIAG-ESFNVGSPKQVGEVLFEKLGLKGGKKTATGQYSTSEAVLEKI--DHPIT 618

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
             +   R   ++        LV+  N D 
Sbjct: 619 ELIIEYR-GLTKLRSTYTEALVKQANPDT 646


>gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672]
          Length = 791

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 83/604 (13%), Positives = 187/604 (30%), Gaps = 146/604 (24%)

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY--D 144
            I +                  LK + +  K+ + ++ + +  I+     +T    +   
Sbjct: 311 GIKLRYVFD-------------LKNIIKNHKIDTDQLVDFEI-ISWLTDPDTGTIKFTDK 356

Query: 145 RNKPNHREAWRLFGEY--CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
               +  E      E+   + D     E++ ++E       ++ ++   +   G  ++  
Sbjct: 357 DTLESFFEKILQKKEFILDRMDKYNLWELYNKVE------HKIIHILSEMEQTGILLNSK 410

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
                ++ +        + ++ +      +    ++L   LF +  +      +   +T 
Sbjct: 411 QLKETDEKIKELLNNEKKAIDEMLG-EEINLNSPKQLSFVLFEKLKMVPFKKNKTGYSTD 469

Query: 260 QRVLSSNKKLTPQAIQVFN---NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASR 315
           +  L +   L P    +          S+      + L + ++ S GR+    +  G + 
Sbjct: 470 EDSLRNMIFLNPSYENLLKSILKYREFSKLISTYTSKLSDYIDRSTGRIHTQFKQTG-TA 528

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P+                            +   +RS  ++ EG  
Sbjct: 529 TGRLSSVNPNLQNIPQKGE-------------------------LGSEIRSAFVSKEGYS 563

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
            +  D + IE R+LA ++ ++    AFE   D++  T  + F +  +++T+D R I K +
Sbjct: 564 FLSIDYSQIELRILAHISDDENLKIAFEQDFDIHTMTAMKVFGLLESEITRDIRRIAKAV 623

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               GL+    +                               +
Sbjct: 624 N--------------FGIIYGLSPYGLS------------------------------RD 639

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                +  +   K + + +  V +   E+    ++   +G                    
Sbjct: 640 VGIPQSEAKIFIKKYFETYPNVKKYMKEI---VKKAENDGYVTTILN------------- 683

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                     R     D+ +     NT  ++  R            +Q  + DI+   M+
Sbjct: 684 ----------RPRFIPDIKSAN---NTIKQRAERIAINSP------IQGSAADIIKLAMI 724

Query: 616 NATK------AGYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEGY 668
            + K          ++L VHDE+V E  D      +  +  +M +   +   +PLK    
Sbjct: 725 KSDKYLKRMQIDGKLILQVHDELVFEINDKYIDKTSKDIKVIMENI--YPLKVPLKVNLG 782

Query: 669 ESKR 672
            SK 
Sbjct: 783 ISKN 786


>gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
 gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor]
          Length = 1178

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 101/802 (12%), Positives = 195/802 (24%), Gaps = 192/802 (23%)

Query: 5    FIDFETRSPIDLTKCGICKYAEDVCVILFAF----------GFDDHPVELW-DCVHDPV- 52
              D E    +   +           VI F+            F +    +W D +     
Sbjct: 432  ACDTE----VANIEAKEETPVGHGEVICFSIYSANSDVQAADFGNGKTCIWVDVLDGGRG 487

Query: 53   MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP------ 106
            +        E+  +  V HN  F+  V++    + +   R   T+ LAR           
Sbjct: 488  VLMEFAPFFEDPSIKKVWHNYSFDNHVIENY-GIKVAGFR-ADTMHLARLWDSSRKIDGG 545

Query: 107  SALKAVGEALK----LSSQKMEEGKELIA--RFCKGETHECLYDRNKPNHR------EAW 154
             +L+ +    +    +     + GK  +      K    +    +            E  
Sbjct: 546  YSLEGLTNDRRVMDTVPEDLPKPGKISMKTIFGRKKVRKDGSEGKVVSIDPVKELQREDR 605

Query: 155  RLFGEYCKGDVTVTREIFKRLEPLSS--------------------KEQELWYLDQTIND 194
             L+  Y   D   T  +++ L+                               L   +  
Sbjct: 606  ELWICYSSLDSMSTLRLYESLKRKLETRRWVLDGCPRGTMYDFYEQYWCPFGALLVKMET 665

Query: 195  RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244
             G  VD      + +    ER     +               +     +++  LF     
Sbjct: 666  EGMLVDRGYLSEIEKAAIAERELAADKFRKWASKYCPDAKYMNVNSDTQIRQLLFGGIEN 725

Query: 245  -LETGLHLE-DLT-------------ETTCQRVLSSNKKLTPQAIQVFN----------- 278
              ++G       T             + T +        +                    
Sbjct: 726  RHKSGETWPQSKTFKVLNEENVATEGKKTSKYRTIKLCSIVEDLKTDMFTPSGWPSASGD 785

Query: 279  -NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR------------------- 318
              R  A +     + T+ +    D    G+    G S  G                    
Sbjct: 786  ALRSLAGKIPTEYIYTMGDIQEDDEDSSGSENPDGDSSYGTAYEAFGGGKNGKEACHAIA 845

Query: 319  -----------WSGCVFPPQNLPRPSRSHE-------ELDQIITHLPTSITSDPDPLQII 360
                        S  + P Q                   +       T    +   L+  
Sbjct: 846  ALCEICSIDSLISNFILPLQGDRISCAEGRIHCSLNINTETGRLSARTPNLQNQPALEKD 905

Query: 361  SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +R   +A+ G  L+VAD   +E R+LA +   +  L AF+ G D +  T    +   
Sbjct: 906  RYKIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLDAFKAGGDFHSRTAMNMYQHI 965

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
               V +                   K   +     G        L     A        N
Sbjct: 966  RDAVHE------------------KKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLN 1007

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
            F     +     + +            K W      V        +   +  E       
Sbjct: 1008 FSIAYGKTALGLSRDWKVSVKEARDTLKLWYGDRKEVLAWQKSQKKLAREKCEVY----- 1062

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                    GRS  + ++     +       + R           
Sbjct: 1063 ---------------------TLLGRSRHFPNLT---QFGPGQRGHIERAAINAP----- 1093

Query: 601  IVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTS 653
             VQ  + D+    M+   +       G+ ++L VHDE++ E P ++ E   +++   M+ 
Sbjct: 1094 -VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPSESAEVAKAIVVECMSK 1152

Query: 654  NP--SWAKGLPLKAEGYESKRY 673
                +    + L  +   +K +
Sbjct: 1153 PFHGTNILKVDLAVDAKCAKSW 1174


>gi|50365399|ref|YP_053824.1| DNA polymerase I [Mesoplasma florum L1]
 gi|50363955|gb|AAT75940.1| DNA polymerase I [Mesoplasma florum L1]
          Length = 895

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 87/655 (13%), Positives = 182/655 (27%), Gaps = 153/655 (23%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKA 82
               ++  A   +     L D ++D      L++   N +      N+ ++      L  
Sbjct: 335 HKGQILGLAICNEKGFFYLNDIIND----LELEQFFLNDNFKK---NT-YDIKKTVTLLR 386

Query: 83  CFNLDIPIHRW-ICTLVLARSNGLP-----SALKAVGE-ALKLSSQKMEEGK-----ELI 130
             N+      +    ++ +             L  + E  L +   ++  GK     + I
Sbjct: 387 NNNIKFSFSSFTYDAMIASYVLNPNVTSRIQNLANIVETELFVEEDELFYGKGVKQNKEI 446

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
               K +      +     H+    L  E  +        +++++E        L  +  
Sbjct: 447 DTASKAKFIVGKLELLYSTHKPIINLLKENNQ------FNLYEKIE------LPLVEVLF 494

Query: 191 TINDRGYCVDVALAHTLNQI---VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
            +  +G  +D             +  E  +  + +         +    +++K  LF + 
Sbjct: 495 NMEQKGILIDKVELDKQTARTLFLIEELEEKMKVILKDQISENFNFGSPKQIKELLFDQI 554

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
           GL       +T +  L     L P    +  +R + ++     L    + +  D ++   
Sbjct: 555 GLPSNKKQ-STDKEALEKIIHLHPVINLLLEHR-KLNKLYSTYLRGFEKFIFDDNKVHTI 612

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                 + TGR S      QN+        E                          R  
Sbjct: 613 FNQ-TLTNTGRLSSSEPNIQNISVKDELQREA-------------------------RKI 646

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426
            I++   K    D + IE RVLA +  E   L  F+   D++     + F +    ++T 
Sbjct: 647 FISNNDTKFFSFDYSQIELRVLAQLGQEDTLLNIFKNDRDVHAEAARKIFKLEENEEITS 706

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           DQR I                        GL+    ++                      
Sbjct: 707 DQRRIA--------------KVFNFGIIYGLSDFGLSN---------------------- 730

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                   +        +R    +     ++    N L      T+       A +RR V
Sbjct: 731 --------DLKISIPEAKRFIDDYYLSFPKLMTYKNSLINQA--TVNGYAETYANRRRIV 780

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                                    ++ ++   +     ++              +Q  +
Sbjct: 781 N------------------------ELASSNFMVKNFGNRI---------AVNMPIQGTA 807

Query: 607 RDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN 654
            DIL   M N  K          +   +HDEI+ E  +++E     ++   M + 
Sbjct: 808 ADILKVAMNNIHKEFRENNLKSFMTAQIHDEIIFEIFESEESLAVKIVEECMQNA 862


>gi|332674238|gb|AEE71055.1| DNA-directed DNA polymerase I [Helicobacter pylori 83]
          Length = 893

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 98/663 (14%), Positives = 201/663 (30%), Gaps = 140/663 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF ++D                    +     + L+   V I+ H+     +
Sbjct: 351 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQ--HVQIIGHDLKPLLS 407

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGE 137
            LKA + + +   R   T +LA            V +        + E  +      K E
Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELILHEKIKDFKTKSKAE 467

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
             E            A R   EY +        +          E     +   +  +G+
Sbjct: 468 KSE-----QLDRELNALRRLCEYFEKGGLEEGLLALAR----EVETPFVKVLMDMEFQGF 518

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +D      L Q    E   L++++  L      +    ++L   L+ +  L  ++ + +
Sbjct: 519 KIDAPYFKRLEQEFKNELHVLERQILELIGTD-FNLNSPKQLSEILYEKLELP-KNKSHS 576

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T ++ L       P    +   R   ++        L+   + D ++  T    G + TG
Sbjct: 577 TDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATG 634

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376
           R S      QN+P  S                              +R   IAS +   L
Sbjct: 635 RLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYCL 669

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +  D + IE R+LA  + ++  + AF  G D+++ T    F      + K++R+I K + 
Sbjct: 670 LGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSIN 726

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G+                                 + +   
Sbjct: 727 --------------FGLVYGMG------------------------------SKKLSETL 742

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +   +A+ ++   + +  N + +   +T +                       
Sbjct: 743 NIPLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSK----------------------- 779

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                   GR  V+ D      Y+            Y  +    I Q  + D+L  GM+ 
Sbjct: 780 ---AFTLLGRYRVF-DFTGVNDYIKGN---------YLREGVNAIFQGSASDLLKLGMLK 826

Query: 617 ATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYES 670
            ++         ++L VHDE++ E  + +       +  ++     +   +PL+   + +
Sbjct: 827 VSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFIA 885

Query: 671 KRY 673
           KR+
Sbjct: 886 KRW 888


>gi|317011604|gb|ADU85351.1| DNA polymerase I [Helicobacter pylori SouthAfrica7]
          Length = 833

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/613 (15%), Positives = 194/613 (31%), Gaps = 128/613 (20%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           I+ H+     + LKA + + +   R   T +LA             E LK   Q+     
Sbjct: 337 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKV--GFDEVLKEYLQEDLILH 394

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           E I  F      E L   N   +    +   EY +        +          E     
Sbjct: 395 EKIKDFKTKNKAEQLERLNLELNA--LKRLCEYFEKGGLEENLLSLAR----GIEMPFMK 448

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +  +G+ +D      L Q    E   L++++  L      +    ++L   L+ + 
Sbjct: 449 VLINMEFQGFKIDAPYFKRLEQEFKDELKVLERQILDLIG-EDFNLNSPKQLGEVLYEKL 507

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
            L  ++ + +T ++ L       P    +   R   ++ +      L+   + D ++  T
Sbjct: 508 NLP-KNKSHSTDEKSLLKIMDKHPSISLILEYR-ELNKLSNTYTTPLLRLKDKDDKIHTT 565

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
               G + TGR S      QN+P  S                              +R  
Sbjct: 566 FIQTG-TATGRLSSHSPNLQNIPVRSSKGL-------------------------LIRKG 599

Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            I+S +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      + K
Sbjct: 600 FISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAK 656

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           ++R+I K +                    G+                             
Sbjct: 657 EKRSIAKSIN--------------FGLVYGMG---------------------------- 674

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
               + +       +  +   +A+ ++   + +  N + +   +T +             
Sbjct: 675 --SKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMREEILKTSK------------- 719

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                             GR  V+ D      Y+            Y  +    I Q  +
Sbjct: 720 -------------AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNAIFQGSA 756

Query: 607 RDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKG 660
            D+L  GM+  ++         ++L VHDE++ E  + +       +  ++     +A  
Sbjct: 757 SDLLKLGMLKVSERFKNDSSVRLLLQVHDELIFEIEEKNALKLQQEIQGILNHEV-YALR 815

Query: 661 LPLKAEGYESKRY 673
           +PL+   + +KR+
Sbjct: 816 VPLETSAFIAKRW 828


>gi|217033899|ref|ZP_03439323.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
 gi|216943662|gb|EEC23107.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10]
          Length = 891

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/667 (13%), Positives = 202/667 (30%), Gaps = 148/667 (22%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF ++D                    +     + L++  +  + H+     +
Sbjct: 349 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFSQILQHAQI--IGHDLKPLLS 405

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQKMEEGKELIARF 133
            LKA + + +   R   T +LA            V +       +  +K+++ K      
Sbjct: 406 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFK------ 459

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                 +            A +   EY +        +          E     +   + 
Sbjct: 460 ---TKSKAEKLEQLDRELHALKRLCEYFEKGGLEEGLLALAR----EVETPFMKVLMGME 512

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
            +G+ +D      L Q    E   L++++  L      +    ++L   L+ +  L   +
Sbjct: 513 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGAD-FNLNSPKQLSEILYEKLELPQ-N 570

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            + +T ++ L       P    +   R   ++        L+   + D ++  T    G 
Sbjct: 571 KSRSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 628

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           + TGR S      QN+P  S                              +R   IAS +
Sbjct: 629 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSK 663

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+  D + IE R+LA  + ++  + AF  G D+++ T    F      + K++R+I 
Sbjct: 664 EYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIA 720

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G+                                 + 
Sbjct: 721 KSIN--------------FGLVYGMG------------------------------SKKL 736

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           +          +   +A+ ++   + +  N + +   +T +                   
Sbjct: 737 SETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK------------------- 777

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR  V+ D      Y+            Y  +    I Q  + D+L  
Sbjct: 778 -------AFTLLGRYRVF-DFTGANDYIKGN---------YLREGVNAIFQGSASDLLKL 820

Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           GM+  ++         ++L VHDE++ E  + +       +  ++     +   +PL+  
Sbjct: 821 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETS 879

Query: 667 GYESKRY 673
            + +KR+
Sbjct: 880 AFIAKRW 886


>gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
 gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260]
          Length = 844

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 90/552 (16%), Positives = 168/552 (30%), Gaps = 128/552 (23%)

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-LSSKEQELW 186
           +L+      +  E       P     + L    C+        ++  + P +   +  L 
Sbjct: 394 KLVHYALHPDRGESAGRGLPPGTENPFALLETLCEE------PLWPSVAPLVRDLDLPLA 447

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            +   +  RG  VD     +L+  ++    +L+  + +     V + +  +++   LF  
Sbjct: 448 PVLARMESRGIGVDEGALASLDVRLEGRSRELEALVRAEAGEEV-NLQSPKQMAALLFER 506

Query: 247 TGLHLEDLTE---TTCQRVLSSNKKLTP---QAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
            GL     T+   +T   VL    KL     +  +        ++     +   ++  + 
Sbjct: 507 LGLPPLKKTKTGFSTDVGVLEELAKLPDPLSRVPRHLLEHREVAKLRTGFVQPFLKQAHR 566

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           DG    +     A+ TGR S      QNLP                              
Sbjct: 567 DGGHIYSTFEQTATGTGRLSSRDPNVQNLP-------------------------VFGEW 601

Query: 361 SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           ++  R C++  S   + + AD + IE RVLA + GE   ++AFE G D++  T +  + V
Sbjct: 602 AEAFRRCLVPTSPKDRFLSADYSQIELRVLAHLCGEPRLVQAFEAGRDIHRETASWVYGV 661

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           A  +V+ +Q                                              +    
Sbjct: 662 AAEEVSAEQ--------------------------------------------RRFAKVV 677

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
           NF      +    A           ++   +     RV E    L +   +    G  + 
Sbjct: 678 NFGLLYGMSAHGLAQRMGVGRPEAAQIIDRYFSVLPRVREY---LEETVREAKARGYTVS 734

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                                    GR       G   +        L R          
Sbjct: 735 L-----------------------FGRVRPL---GEVSTVEGRGGGALDRVA------VN 762

Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD-EFNASMLYHLMT 652
           + +Q+ + DI    M++  +          +VL VHD +VC+ P    E  AS+L  +M 
Sbjct: 763 SPIQSTAADIAKVAMVDLERRLRGSGLPVRLVLQVHDSLVCQVPQEALEEAASLLRDVME 822

Query: 653 SNPSWAKGLPLK 664
              +    +PL+
Sbjct: 823 RAVT--LSVPLE 832


>gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 477

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/506 (15%), Positives = 139/506 (27%), Gaps = 121/506 (23%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E     L   +   G   D      + Q       +  +E  +       +    ++L
Sbjct: 76  DVELPTSELLARLERSGIAADRDWLDRMEQQFAGAVQQAVKEAHAAVGH-EFNLGSPKQL 134

Query: 240 KTWLFLETGLHLEDLTETT---CQRVLSSNKKL-TPQAIQVFNNRMRASRSAVLKLNTLV 295
           +  LF E GL     T+T        L+        +   +       +R     +  L+
Sbjct: 135 QEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHELPVIMLRHREQARLRST-VEGLI 193

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           + ++  GR+  T     A+ TGR S      QN+P  +                      
Sbjct: 194 KTISPGGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGRA----------------- 235

Query: 356 PLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   +R   +  EG + L+ AD + IE RV+A ++ +   ++AF +GEDL+ T  +
Sbjct: 236 --------IRRGFVVGEGFESLMTADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTTVAS 287

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           + F VA ++V  + R   K M                    GL+    +           
Sbjct: 288 QVFGVAKSEVDPEMRRKIKAMSY--------------GLAYGLSAFGLSGQ--------- 324

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                         R+   + ++   V +    + +        
Sbjct: 325 ---------------------LGIGADEARRLMDTFFERFGGVRDYLQRVVEEAR----- 358

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                         GR     D+ ++            R     
Sbjct: 359 ---------------------AIGYTETMLGRRRYLPDLTSDN---RQRREMAERMALNA 394

Query: 595 GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  +Q  + DI+   M+    A         ++L VHDEIV E    +      L 
Sbjct: 395 P------IQGTAADIVKIAMLKVDAALTAGELSSRMLLQVHDEIVLEIAPGERERVEELV 448

Query: 649 -HLMTSNPSWAKGLPLKAEGYESKRY 673
              M          PL         +
Sbjct: 449 RREMAGAFQ--LRAPLDVSVGVGADW 472


>gi|297380674|gb|ADI35561.1| DNA polymerase I [Helicobacter pylori v225d]
          Length = 827

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/667 (13%), Positives = 202/667 (30%), Gaps = 148/667 (22%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF ++D                    +     + L++  +  + H+     +
Sbjct: 285 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHACI--IGHDLKPLLS 341

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQKMEEGKELIARF 133
            LKA + + +   R   T +LA            V +       +  +K+++ K      
Sbjct: 342 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFK------ 395

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                 +            A +   EY +        +          E     +   + 
Sbjct: 396 ---TKSKVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----EVETPFMKVLMGME 448

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
            +G+ +D      L Q    E   L++++  L      +    ++L   L+ +  L   +
Sbjct: 449 FQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVD-FNLNSPKQLSEILYEKLELPQ-N 506

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            + +T ++ L       P    +   R   ++        L+   + D ++  T    G 
Sbjct: 507 KSRSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 564

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           + TGR S      QN+P  S                              +R   IAS +
Sbjct: 565 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSK 599

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+  D + IE R+LA  + ++  + AF  G D+++ T    F      + K++R+I 
Sbjct: 600 EYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIA 656

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G+                                 + 
Sbjct: 657 KSIN--------------FGLVYGMG------------------------------SKKL 672

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           +          +   +A+ ++   + +    L++  E+ ++  KA     R  V      
Sbjct: 673 SETLNIPLNEAKSYIEAYFKRFPSIKDY---LNRMKEEILKTSKAFTLLGRYRVFDFTGA 729

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
            D+                                     Y  +    I Q  + D+L  
Sbjct: 730 NDRIKGD---------------------------------YLREGVNAIFQGSASDLLKL 756

Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           GM+  ++         ++L VHDE++ E  + +       +  ++ +   +   +PL+  
Sbjct: 757 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNNEV-YPLRVPLETS 815

Query: 667 GYESKRY 673
            + + R+
Sbjct: 816 AFVANRW 822


>gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 932

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 101/652 (15%), Positives = 189/652 (28%), Gaps = 142/652 (21%)

Query: 53  MPQVLKE----ALENT---DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           +P  L       L +    D     +++   R  L A    ++         +L      
Sbjct: 389 VPDELTPQTEHLLCDALAGDRKKTVYDAKSLRHALHAH-GWELH-GAVTDIKMLDYLVNP 446

Query: 106 PSALKAVGEALK-LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW------RLFG 158
                      K L   +++E    I++  +  T +   + +  +  + W      +   
Sbjct: 447 DGNRTKFAGVTKRLLGWEIDEKPSDISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIY 506

Query: 159 EYCKGDVTVTRE---IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
            Y    +  T E    F++++ L   E  L Y+ + +   G  +D        Q +  E 
Sbjct: 507 AYALLQMQPTLEQLAHFRQVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEV 566

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNK--KLT 270
               Q         V +    ++L+  LF +  L     T+T      + L         
Sbjct: 567 AMAQQSAFDSIGREV-NLSSPKQLQEVLFTQLELPKTKKTKTGYTTDAKALEELARYNPH 625

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    +  +R R     +  +  L E +  DGR+  T     A+ TGR S      QN+P
Sbjct: 626 PFLEALLYHRDRIKLLQI--VRNLRERVADDGRIHTTFGQTVAA-TGRLSSIDPNLQNIP 682

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVL 389
             +                              +R   +  +    L+ AD + IE R++
Sbjct: 683 ARTVDG-------------------------QKIREAFVPQKPYAALMTADYSQIEMRIM 717

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++G++  L AF +GEDL+ +  A  + V P +VT  QR+  K     L Y        
Sbjct: 718 AHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYG-----LS 772

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                  L                                              +++   
Sbjct: 773 AYGLAAQL---------------------------------------NISQRDAKQLMDT 793

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           + ++  +V E  N++                                        GR   
Sbjct: 794 YFERFGKVREYLNQIVATA--------------------------TRVGYTETMRGRRRY 827

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYD 623
             ++ +             R            +Q  + D++   M+         +    
Sbjct: 828 LPELRSTN---RNVADNARRAALNAP------IQGSAADLMKAAMLQVDADLRQEQLQSR 878

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE+V E    +      L    MT        +PL+        +R
Sbjct: 879 VLLQVHDELVLEVAPGETERLETLVRQAMTGVAK--LRVPLEVSVGIGPNWR 928


>gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
 gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed))
           [Helicobacter pylori B38]
          Length = 889

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 98/664 (14%), Positives = 202/664 (30%), Gaps = 144/664 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF ++D                    +     + L+   V IV H+     +
Sbjct: 349 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFLKMLQ--HVQIVGHDLKPLLS 405

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEGKELI-ARFCKG 136
            LKA + + +   R   T +LA             E +      K    +ELI     K 
Sbjct: 406 FLKAKYQVPLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLKEELIPHEKIKD 457

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
              +            A +   EY +        +          E     +   +  +G
Sbjct: 458 FKTKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALAK----EIETPFMKVLMGMEFQG 513

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
           + +D      L Q    E   L++++  L      +    ++L   L+ +  L  ++ + 
Sbjct: 514 FKIDAPYFKRLEQEFKNELHVLERQILDLIGVD-FNLNSPKQLSEVLYEKLELP-KNKSH 571

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T ++ L       P    +   R   ++        L+   + D ++  T    G + T
Sbjct: 572 STDEKNLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TAT 629

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P  S                              +R   IAS +   
Sbjct: 630 GRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYC 664

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      + K++R+I K +
Sbjct: 665 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKEKRSIAKSI 721

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G+                                 + +  
Sbjct: 722 N--------------FGLVYGMG------------------------------SKKLSET 737

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                   +   +A+ ++   + +  N + +   +T +                      
Sbjct: 738 LNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK---------------------- 775

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                    GR  V+ D      Y+            Y  +    I Q  + D+L  GM+
Sbjct: 776 ----AFTLLGRYRVF-DFNGVNDYIKGN---------YLREGVNAIFQGSASDLLKLGML 821

Query: 616 NATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669
             ++         ++L VHDE++ E  + +       +  ++     +   +PL+   + 
Sbjct: 822 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFV 880

Query: 670 SKRY 673
           + R+
Sbjct: 881 ANRW 884


>gi|317178174|dbj|BAJ55963.1| DNA polymerase I [Helicobacter pylori F16]
          Length = 893

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 93/667 (13%), Positives = 202/667 (30%), Gaps = 148/667 (22%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF  +D                    +     + L++  +  + H+     +
Sbjct: 351 KEKKVLALAFLLEDQ-GYFLPLEEALFSPFSLEFLQNAFSQILQHAQI--IGHDLKPLLS 407

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQKMEEGKELIARF 133
            LKA + + +   R   T +LA            V +       +  +K+++ K      
Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFK------ 461

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                 +            A +   EY +        +          E     +   + 
Sbjct: 462 ---TKSKAGKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----EVETPFVKVLMGME 514

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
            +G+ +D      L Q    E   L++++  L      +    ++L   L+ +  L  ++
Sbjct: 515 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEILYEKLELP-KN 572

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            + +T ++ L       P    +   R   ++        L+   + D ++  T    G 
Sbjct: 573 KSHSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 630

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           + TGR S      QN+P  S                              +R   IAS +
Sbjct: 631 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSK 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+  D + IE R+LA  + ++  + AF  G D+++ T    F      + K++R+I 
Sbjct: 666 EYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIA 722

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G+                                 + 
Sbjct: 723 KSIN--------------FGLVYGMG------------------------------SKKL 738

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           +          +   +A+ ++   + +  N + +   +T +                   
Sbjct: 739 SETLNIPLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSK------------------- 779

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR  V+ D      Y+            Y  +    I Q  + D+L  
Sbjct: 780 -------AFTLLGRYRVF-DFTGVNDYIKGN---------YLREGVNAIFQGSASDLLKL 822

Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           GM+  ++         ++L VHDE++ E  + +       +  ++     +   +PL+  
Sbjct: 823 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETS 881

Query: 667 GYESKRY 673
            + +KR+
Sbjct: 882 AFIAKRW 888


>gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
 gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547]
          Length = 904

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/622 (14%), Positives = 168/622 (27%), Gaps = 153/622 (24%)

Query: 86  LDIPIHRW-ICTLVLARSNGL---PSALKAVGEALKLSSQKMEE----GKELIARFCKGE 137
           + + +    + T + A           L  +            E    G+ L        
Sbjct: 397 IGLRLETVAVDTALAAYLVRPDQRSYDLADLCLRHLQRELPTAEDSGPGEALFDASEVDG 456

Query: 138 THECLYDRNKPNHRE-----AWRLFGEYCKGD---VTVTREIFKRLEPLSSKEQELWYLD 189
           + + L    +                +    D     + R++          E  L    
Sbjct: 457 STDGLTTAARTAALRAAAVRELAPVLQQEVEDIGAAGLERDL----------ELPLARHL 506

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  VD      L      +  +   +  +       +    ++L+  LF   GL
Sbjct: 507 VAMEATGIAVDTDRLDALEGEFADQVAQATADAHAAIDDPGVNLGSPKQLQEVLFERLGL 566

Query: 250 HLEDLTETT---CQRVLSSNKKLTPQ-------AIQVFNNRMRASRSAVLKLNTLVEAMN 299
                T+T        L   +    +          +  +R   +R     +  L +A++
Sbjct: 567 PKTKKTKTGYTTDADALVWLRAQASEGSTAETFLEALLRHR-DVTRLRST-VQGLQKAVD 624

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +DGR+  T Q   A+ TGR S      QN+P  + +                        
Sbjct: 625 ADGRIHTTYQQTIAA-TGRLSSVDPNLQNIPIRTEAGRR--------------------- 662

Query: 360 ISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
               +R   +   G   L+ AD + IE R++A ++G++  ++AF  GEDL+    ++ F 
Sbjct: 663 ----IREVFVVGSGFDHLMSADYSQIEMRIMAHLSGDEGLIEAFRAGEDLHRYVGSKVFQ 718

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           VAP +VT + RA  K M   L Y            +  L                     
Sbjct: 719 VAPEEVTAEMRAKVKAMSYGLAYG-----LSSFGLSKQL--------------------- 752

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                                      +   +  +   V +    +     +T       
Sbjct: 753 ------------------GITPAEASALMDEYFARFGGVRDYLRAVVDEARRT------- 787

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                     GR     D+ +             R         
Sbjct: 788 -------------------GYTETMLGRRRPLPDLASTN---RQRREMAERMALNAP--- 822

Query: 599 ENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651
              +Q  + D++   M+    A         ++L VHDE+V E    +      L    M
Sbjct: 823 ---IQGSAADVMKLAMLKVEDALDAQRLASRVLLQVHDELVLEVAPDEGSAVEALVREAM 879

Query: 652 TSNPSWAKGLPLKAEGYESKRY 673
            S       +PL       + +
Sbjct: 880 GSALD--LDVPLDVSIGTGRSW 899


>gi|188528242|ref|YP_001910929.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
 gi|188144482|gb|ACD48899.1| DNA polymerase I (polA) [Helicobacter pylori Shi470]
          Length = 893

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 94/663 (14%), Positives = 195/663 (29%), Gaps = 140/663 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF ++D                    +     + L++  +  + H+     +
Sbjct: 351 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 407

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGE 137
            LKA + + +   R   T +LA            V               E I  F    
Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVVREYLKEEL---IPHETIKDF--KT 462

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
                          A +   EY +        +          E     +   +  +G+
Sbjct: 463 KSRVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----EVETPFMKVLMGMEFQGF 518

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +D      L Q    E   L++++  L      +    ++L   L+ +  L   + + +
Sbjct: 519 KIDAPYFKRLEQEFKDELHVLERQILDLIGVD-FNLNSPKQLSEILYEKLELPQ-NKSRS 576

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T ++ L       P    +   R   ++        L+   + D ++  T    G + TG
Sbjct: 577 TDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATG 634

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376
           R S      QN+P  S                              +R   IAS +   L
Sbjct: 635 RLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYCL 669

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +  D + IE R+LA  + ++  + AF  G D+++ T    F      + K++R+I K + 
Sbjct: 670 LGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSIN 726

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G+                                 + +   
Sbjct: 727 --------------FGLVYGMG------------------------------SKKLSETL 742

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +   +A+ ++   + +  N + +   +T +                       
Sbjct: 743 NIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK----------------------- 779

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                   GR  V+   G N                Y  +    I Q  + D+L  GM+ 
Sbjct: 780 ---AFTLLGRYRVFDFTGANDHIKGN----------YLREGVNAIFQGSASDLLKLGMLK 826

Query: 617 ATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYES 670
            ++         ++L VHDE++ E  + +       +  ++     +   +PL+   + +
Sbjct: 827 VSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFMA 885

Query: 671 KRY 673
           KR+
Sbjct: 886 KRW 888


>gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555]
 gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016]
 gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555]
 gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 880

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/637 (14%), Positives = 185/637 (29%), Gaps = 135/637 (21%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV---LKACFNLDIPIHRWICTLVLAR 101
               +     +  K   EN+ ++ V     ++  V   +     + + +       + A 
Sbjct: 367 IYDENKIKAVETAKMLFENSSLSKV----SYDVKVPCSILHRMGIKL-LGIEFDIKIAAY 421

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                     +           +  KE +      E  +C         R    L  +  
Sbjct: 422 LMDPARTNYEL----------PDIIKEYLNIEISEEREDCFIKETLLFSRLYSTLKKKIS 471

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              +                EQ L ++  ++   G+ VD      + +   +E  K+ +E
Sbjct: 472 DSSMDKLLY---------EVEQPLTFVLASMECEGFKVDKDKLTEMEEKFKIEIDKVQKE 522

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFN 278
           +  L+     +    ++L   LF +  L +   T+   +T   VL       P   ++  
Sbjct: 523 IYFLSE-EEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNADVLERLHGKHPVIEKIIY 581

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   ++     +  L   +  DG++         + TGR S      QN+P      +E
Sbjct: 582 YRQ-LTKLYSTYIEGLKGVIEEDGKIHSNFNQTVTT-TGRLSSTEPNLQNIPIKYEMGKE 639

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQW 397
                                    +R   I       ++ AD + IE RVLA ++G++ 
Sbjct: 640 -------------------------IRKIFIPDNRDCVILSADYSQIELRVLAHISGDEN 674

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF    D++  T +  FNV   +VT  QR+  K +   + Y  G       +    L
Sbjct: 675 LINAFINHNDIHTKTASEVFNVPLGEVTSTQRSNAKAVNFGIVYGIG-----DFSLARNL 729

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           N+         ++  E++   + +   + +   ++      +     R     +  +  +
Sbjct: 730 NIPRKEAKSYIDAYFEKYPKVKLYMNDIVKQAEKNFYVTTILNR--RRFIPEIKSSNKII 787

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
             L     +    T   G A    K   V +    KD N                     
Sbjct: 788 KALG---ERFAMNTPIQGSAADIIKIAMVNVFNRLKDNNFKSK----------------- 827

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH-DEIVCET 636
                                          I+    +        +VL V+ DE+    
Sbjct: 828 -------------------------------II----LQVHDE---LVLNVYKDEL---- 845

Query: 637 PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +    ++   M +       +PL+ +      +
Sbjct: 846 ----KDVKDIVKEEMENVFK--LKVPLEVDISIGDNW 876


>gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 911

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/682 (14%), Positives = 191/682 (28%), Gaps = 135/682 (19%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-------- 58
           D+E  S   L    + +      +I      +       D  +        +        
Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTN 377

Query: 59  ----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
               E L N ++    ++      +LK      +  +     +V   S         +  
Sbjct: 378 SLFEEFLNNPNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANVV-SDLSS 436

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +KL    + E + +   F KG       D +  +   + + +      D  + +     
Sbjct: 437 QIKL-VDNLVELETIDEIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTN 495

Query: 175 LEP-LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV--- 230
                   +  L  +   I  +G  +D        Q +  +   ++ +++ L    +   
Sbjct: 496 TYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEIDNN 555

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++++  LF +  L   +   TT + VL       P    +  +R + ++     
Sbjct: 556 FNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITYHPIINLLLEHR-KYTKLYTTY 613

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L    + +  D ++         + TGR S      QN+       +E            
Sbjct: 614 LKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNISIRDNEQKE------------ 660

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        VR   I +  K  +  D + IE RVLA M+ E   + AF    D+++
Sbjct: 661 -------------VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHL 707

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
                 FN++  Q+T +QR I KV                     GL             
Sbjct: 708 QAAKLIFNLSDDQITSEQRRIAKVFN--------------FGILYGLTDFGL-------- 745

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                 A +        +++ K +      + +      +  E 
Sbjct: 746 ----------------------ASDLNISVNQAKQMIKDYYSAFPSLLDFK---EKQVEI 780

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
               G                            S R     ++ +    +    +++   
Sbjct: 781 ATSQGYITTL-----------------------SNRRRYINELNSTNHNIRQFGKRI--- 814

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DIL   M++  K          IV  +HDEI+ E  D      
Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQT 868

Query: 645 SML-YHLMTSNPS-WAKGLPLK 664
             +  H + +        L LK
Sbjct: 869 KKIVVHELENALEKLFLDLNLK 890


>gi|184155793|ref|YP_001844133.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956]
 gi|183227137|dbj|BAG27653.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956]
          Length = 886

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 89/650 (13%), Positives = 173/650 (26%), Gaps = 119/650 (18%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
            F   D    L     D +    LK+ LE+  V     N+  +   L     +D+     
Sbjct: 341 GFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVERDVFNAKAQLVGLHR-LGVDLAGVD- 398

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
              L+ +           +G  L  +    +   +        +      D     H   
Sbjct: 399 FDLLLASYLLNTSENANDLG-VLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLAK 457

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
                   K  +       ++L      E+ L  +   +   G  VD A    +   +  
Sbjct: 458 KARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVE 517

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270
              +L+Q +         +    ++L   LF +  L +   T+   +T   VL       
Sbjct: 518 REAELEQAIYQEAG-EEFNINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDVLEKLADRA 576

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    +   R   S+     +  L++ ++ D +   T      + TGR S      QN+P
Sbjct: 577 PIVQDILAYRQ-ISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIP 635

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVL 389
                                            +R     S  G K+  +D + +E RVL
Sbjct: 636 VRLEEGR-------------------------QIRRAFTPSAPGWKIFSSDYSQVELRVL 670

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAF 448
           A + G++     F  G+D++  T  R F++ +  +VT + R   K +   + Y       
Sbjct: 671 AHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGIS---- 726

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                   ++++         S  +E+   E +   + E   +    +            
Sbjct: 727 -DYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR------- 778

Query: 509 AWRQKHSRV--SELWNE--LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
             R+    +            +    T   G A    K   +                  
Sbjct: 779 --RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIR----------------- 819

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
                                +  R                        ++         
Sbjct: 820 --------------MEKALKERGLRARM---------------------LLQIHDE---- 840

Query: 625 VLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                  +V E P +       ++  +M S       +PLK E      +
Sbjct: 841 -------LVFEAPEEEIAILEELVPSIMDSAVK--LDVPLKVESKSGATW 881


>gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129]
 gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae]
          Length = 899

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 94/630 (14%), Positives = 180/630 (28%), Gaps = 127/630 (20%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLPSALKAVG 113
           Q   + + +       H +     V          ++     T +             + 
Sbjct: 381 QAFAQWIASDS-PKYLHEAK---AVFHMLAGRGYTLNGIEHDTAIAGYLLRPGQRTYDL- 435

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIF 172
                   K    + L  +   G +        + P+ +E         +   ++T ++ 
Sbjct: 436 --------KDVYQRHLQRQLGGGSSESGQLSLLDAPDAQELVDSAVAILELSKSLTAQLQ 487

Query: 173 KR--LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                E     E  L  +   +   G CVDVA       I   +  + +     L     
Sbjct: 488 AIDAYELYREMELPLVGVLARMEATGICVDVATLREQRDIFVEQVKEEESAARELAGDET 547

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNK--KLTPQAIQVFNNRMRASR 285
            +    ++L+  LF   GL     T+   +T  + + S       P    +  +R    +
Sbjct: 548 LNLSSPKQLQVVLFDTLGLPKTKKTKTGYSTAAKEIESLAVKNPHPFLDHLLAHR-EFQK 606

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                L+ L++A+  DGR+  T     A  TGR S      QN+P  + +  +       
Sbjct: 607 MKTT-LDGLIKAVGDDGRIHTTFNQTVA-STGRLSSTEPNLQNIPVRTPAGRK------- 657

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFET 404
                             +RS  +  +G K L+ AD + IE RV+A ++ +   ++A++T
Sbjct: 658 ------------------IRSAFVVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQT 699

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GEDL+    ++ F+V   QVT + R   K M   L Y            +  LN+     
Sbjct: 700 GEDLHNFVGSKVFDVPVDQVTPELRRRVKAMSYGLVYG-----LSAFGLSQQLNIPAGEA 754

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
            V   S  E +   + +   + E   +        G          R+    +S      
Sbjct: 755 KVIMESYFERFGGVKRYLDQVVEQARKDGFTSTLFGR---------RRYLPELSSDNRVA 805

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +  E+                                          +           
Sbjct: 806 RENAERAA----------------------------------------LNAPIQGTAADI 825

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
            ++           EN  Q+         ++                +V E    ++   
Sbjct: 826 IKIAMLRVDARLTAEN-CQS-------RVLLQVHDE-----------LVLEVASGEQEKV 866

Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             L    M +  S    +PL+        +
Sbjct: 867 QQLVEEEMDAAIS--LRVPLEVSAGVGTNW 894


>gi|323451403|gb|EGB07280.1| hypothetical protein AURANDRAFT_27651 [Aureococcus anophagefferens]
          Length = 831

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 113/807 (14%), Positives = 194/807 (24%), Gaps = 236/807 (29%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFA------FGFDD---HPVELWDCVHDPVMPQ 55
            +D E    IDL++ G      +  V  F       F +D          DCV D  +  
Sbjct: 101 AVDTE-VDDIDLSREGP---VGNGRVTCFTVYSGPDFSYDGEAAGKALFVDCV-DAAVLD 155

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP-------- 106
           V      +     V HN  F+R V++      +    +   T+ +AR +           
Sbjct: 156 VFAPWFADESRRKVWHNYGFDRHVVENH---GLACRGFAGDTMHMARLHDSSRLRTHGGD 212

Query: 107 -SALKAVGEALKLSSQKMEEGKELIARFCKGE----THECLYDRNKPNHREAW------- 154
             +L+A+   L  + +     K L   F +             R+               
Sbjct: 213 GYSLEALSRDLISAGEAKVSMKALFPEFFRKTAFADRANGSASRDAARRGLDILRMQTDD 272

Query: 155 ---RLFGEYCKGDVTVTREIF-------------------KRLEPLSSKEQELWY----- 187
                F  Y   D   T ++                     R         + +      
Sbjct: 273 ATRDAFVCYAAYDAKSTWQVHDALRRRLERQAWAPMTDDPPRSPETPKTMWDFYERYFVP 332

Query: 188 ---LDQTINDRGYCVD-----VALAHTLNQIVDVERTKLDQELESLTYGL--VSSSRCLE 237
              +   +   G  VD       +                            + +    +
Sbjct: 333 FGKVLTDMEAAGIYVDAASHLTDVEKAATADKAAALKTFRDWAVERMGPDGALLNPASSK 392

Query: 238 KLKTWLF-------------------------------------------LETGLHLEDL 254
           +++T LF                                              GL     
Sbjct: 393 QIQTLLFGGAMNQKTGEYLETEREFDVDLPPELLPDGDDGASDRTRKLLVRSVGLTPTKY 452

Query: 255 T----ETTCQRVLSSNK----KLTPQAI-------------------QVFNNRMRASRSA 287
           T     +    VL           P                          N        
Sbjct: 453 TTSGAPSCTADVLRELAGRPTDDPPVYGAAHAGFGGGPAGEEACVALDALCNMGSIDTML 512

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +N L    + + R+  +L     + TGR S      QN P                 
Sbjct: 513 NTFINPLRLLADDESRVHCSLNLN--TETGRLSSRRPNLQNQP----------------- 553

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                    L+     +R    A EG  LVVAD   +E R+LA +A  +  L AF  G  
Sbjct: 554 --------ALEKDQYFIRKAFRAKEGCALVVADYGQLELRLLAHVARCESMLVAFREGGC 605

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            +  T    F+          R   +   + L                    +    +  
Sbjct: 606 FHSRTAVGMFD--------HVREAVESGAVLLEKGSSP------------EDSDKPLVKD 645

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
             ++        NF     +     A +        + + +AW      V        + 
Sbjct: 646 VYASERRRAKTLNFSIAYGKTAHGLAKDWGVKQEEAQDMLRAWYDDRPEVEAWQK---RT 702

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                  G                             GR     D+      L     + 
Sbjct: 703 IADAKRTGYTTTL-----------------------MGRRRNLPDILEKNRALQG---RG 736

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDE 641
            R            +Q  + D++   M+   +       GY ++L +HDE++ E P+  +
Sbjct: 737 ARAAINTP------IQGSAADVVMMAMLKIAESKTLKDLGYTLLLQIHDEVILEGPEQHK 790

Query: 642 FNA-SMLYHLMTSNPSWAKGL-PLKAE 666
             A + +  LM +      GL PL  +
Sbjct: 791 EAALAEVTKLMEAPFD-GIGLDPLHVD 816


>gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1]
 gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1]
          Length = 914

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 110/659 (16%), Positives = 190/659 (28%), Gaps = 124/659 (18%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNL 86
             V   A    D               +  L + L + D     H + +    L      
Sbjct: 362 GDVTAIAVAAADGEGAYIATASATPEDEKALGDWLADADQPKALHEAKWAMHAL-RGRGW 420

Query: 87  DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142
            +       T + A           L  +    L+   +  E G+E ++           
Sbjct: 421 VL-GGLTSDTALAAYLVRPGQRTFNLDDLSLRYLRRELRVEETGEEQLSLL----DDADQ 475

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            D                    +    +  +    LS  E  L  +   I   G  VD  
Sbjct: 476 VDAEAAETEILSARAVLDLAAALDTELDNIESTALLSEMELPLLEVLADIEASGIAVDGT 535

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---C 259
             H L      E +   +    +    + +    ++L+  LF E  +     T+T     
Sbjct: 536 HLHDLQSRFAAEVSAAAEAAYGVIGKQI-NLGSPKQLQVVLFDELEMPKTKKTKTGYTTD 594

Query: 260 QRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
              L +  +    P    +  +R  A+R  V  ++ L++ +  DGR+  T     A+ TG
Sbjct: 595 AEALQNLFEKTSHPFLEHLLAHR-DATRLKVT-VDGLLKTVAEDGRIHTTFNQTVAA-TG 651

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KL 376
           R S      QN+P  + +                            +R   +  EG   L
Sbjct: 652 RLSSTEPNLQNIPVRTDAGR-------------------------QIRDGFVVGEGYDSL 686

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A ++G++  ++AF TGEDL+    AR+F V   +VT + R   K M 
Sbjct: 687 LTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMS 746

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L Y               L ++T     +  +    +    ++   + E   +     
Sbjct: 747 YGLAYG-----LSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHEVVEQARKDGYTS 801

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                                                        +RR +P +     + 
Sbjct: 802 TLY-----------------------------------------GRRRYLPDLTSDNRQ- 819

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD-ILAEGMM 615
                    R  V      N     T    +              VQ   RD  L   M+
Sbjct: 820 ---------RREVAERAALNAPIQGTAADIIKVAMIN--------VQRSLRDAGLKSRML 862

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                     L VHDE+V E  D++      L    M+S       +PL       + +
Sbjct: 863 ----------LQVHDELVLEVVDSEREQVEQLVRDKMSSAIE--LSVPLDVSVGTGRSW 909


>gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4]
 gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4]
          Length = 912

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 100/656 (15%), Positives = 189/656 (28%), Gaps = 118/656 (17%)

Query: 29  CVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
            +   AF   D      D    D    + L   L + ++  + H+       +       
Sbjct: 359 DLKAVAFATADGEGAYVDVTAMDEADDRALSAWLADPEIRKIGHDLKVPLHAV-RARGWT 417

Query: 88  IPIHRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                   T + A           L  +         + E G             + L  
Sbjct: 418 FGGLNM-DTALAAYLARPGQRTFGLDDLALRYLHRELRSEAGDGDGQLSLLDGGADELEQ 476

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           +         R   E          E     + L+  E  L  +   +   G  VD    
Sbjct: 477 KEISAELVKARAIFELAGALA-AELEELGGAKLLAELELPLLEVITELEAAGIAVDTDQL 535

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261
             L        T+  +    +    + +    ++L+  LF E G+     T+T   T   
Sbjct: 536 TELEAHYLSRVTQAAESAYEVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDAD 594

Query: 262 VLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            L S   K   P    +  +R  A+R     +  L++++  DGR+  TLQ   A+ TGR 
Sbjct: 595 ALQSLFEKTEHPFLQHLLEHR-DATRLRTT-VEGLIKSVADDGRIHTTLQQTIAA-TGRL 651

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVV 378
           S      QN+P  +                              +R   +  +G  +L+ 
Sbjct: 652 SSIEPNLQNIPVRTEEGRR-------------------------IRDAFVVGDGYAELMT 686

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ ++  ++AF +GEDL+    +R+F+V  A++T +QR   K M   
Sbjct: 687 ADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVASRAFSVPAAEITPEQRYRVKAMSYG 746

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y            +  L ++T     +  +    +    ++ + +     +    +  
Sbjct: 747 LAYG-----LSAYGLSQQLKISTEDAKEQMEAYFSRFGGVRDYLQSVVGEAAKCGYTETI 801

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
            G             +S   +      +        G A    K   + +          
Sbjct: 802 FGRRRYLP-----DLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVH--------- 847

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R+L      +                                      ++   
Sbjct: 848 -------RALAEAGARSRV------------------------------------LLQVH 864

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
                +VL        E  D +  +   L    M S    A  +PL+      + +
Sbjct: 865 DE---LVL--------EIADGERSDVEKLVREGMGSAAELA--VPLEVSVGYGRSW 907


>gi|308062734|gb|ADO04622.1| DNA polymerase I (polA) [Helicobacter pylori Cuz20]
          Length = 893

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 97/663 (14%), Positives = 199/663 (30%), Gaps = 140/663 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF ++D                    +     + L+   V I+ H+     +
Sbjct: 351 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQ--HVQIIGHDLKPLLS 407

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGE 137
            LKA + + +   R   T +LA            V +             E I  F    
Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEL---IPHETIKDF--KT 462

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
            ++            A +   EY +        +          E  L  +   +  +G+
Sbjct: 463 KNKVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----GVETPLMKVLMGMEFQGF 518

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +D      L Q    E   L++++  L      +    ++L   L+ +  L   + + +
Sbjct: 519 KIDAPYFKRLEQEFKNELHVLERQILDLIGVD-FNLNSPKQLSEILYEKLELPQ-NKSRS 576

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T ++ L       P    +   R   ++        L+   + D ++  T    G + TG
Sbjct: 577 TDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATG 634

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376
           R S      QN+P  S                              +R   IAS +   L
Sbjct: 635 RLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYCL 669

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +  D + IE R+LA  + ++  + AF  G D+++ T    F      + K++R+I K + 
Sbjct: 670 LGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSIN 726

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G+                                 + +   
Sbjct: 727 --------------FGLVYGMG------------------------------SKKLSETL 742

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +   +A+ ++   + +  N + +   +T +                       
Sbjct: 743 NIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK----------------------- 779

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                   GR  V+   G N                Y  +    I Q  + D+L  GM+ 
Sbjct: 780 ---AFTLLGRYRVFDFTGANDHIKGN----------YLREGVNAIFQGSASDLLKLGMLK 826

Query: 617 ATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYES 670
            ++         ++L VHDE++ E  + +       +  ++     +   +PL+   + +
Sbjct: 827 VSERFKNNPSVRLLLQVHDELIFEIEEKNALKLQQEIQRILNDEV-YPLKVPLETSAFVA 885

Query: 671 KRY 673
           KR+
Sbjct: 886 KRW 888


>gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG']
          Length = 872

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/649 (13%), Positives = 181/649 (27%), Gaps = 158/649 (24%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRW 93
           D           +  + + +     +    +      F++T L       F L IP    
Sbjct: 363 DGDQAIFHPFSDEEAVFKKMSAW-RDEGKAVWC----FDQTRLYRECPRFFALGIPF--V 415

Query: 94  ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
               + A           L+ +     L+               +      +  R     
Sbjct: 416 FDATIAAYLLDPGHRDYLLENLAARYFLTEISD-----------RPRLVRNILSRLWD-- 462

Query: 151 REAWRLFGEYCKGDVTVT--REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                        D       E+ + +E           +   +   G  +D     +  
Sbjct: 463 -------------DAVKEGLLELVQSIEIPLG------RILYQMEVLGVRIDRQALESAR 503

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
           + ++    +L++E+  L      +    +++   L+ + GL      +   +T +  L+ 
Sbjct: 504 ESIEALSRELEEEIYRLAGSR-FTILSPKQVGEILYGKLGLPTARKGKTGYSTDEETLTR 562

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
              L P   ++   R    +     ++ +   +++ GRL G       + TGR S     
Sbjct: 563 LSALHPLPEKILAYRQ-MKKLLSTYVDPIARGIDAQGRLHGQFNQ-TVTATGRLSSSNPN 620

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  S +  E                         +R C IA E + L+ AD + IE
Sbjct: 621 LQNIPMRSPAGRE-------------------------IRKCFIAGENRVLLSADYSQIE 655

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA  + +   +  FE  ED++  T    F       T + R   K +   + Y   A
Sbjct: 656 LRLLAHFSEDPELMAVFERNEDIHARTARLLFGDPV---TPETRRKAKTINFGILYGMSA 712

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            +  +      L + +       +     +         + E   +       +G   +R
Sbjct: 713 FSLSQ-----DLGVESQEAQAFIDRYFGAFPKVGPLFDSILEEAKKTGEVRTILGR--KR 765

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                     R  E      +    T+  G A    K+  V    ++KD+          
Sbjct: 766 RIPELFASDRRSREYG---ERMAVNTVLQGSAADLIKKSMVDFGQVRKDR---------- 812

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                 ++G                                 D+L    +          
Sbjct: 813 -----PEIG---------------------------------DLL----VQVHDE----- 825

Query: 626 LTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 ++ E  + +   AS  +  LM         +PL  +  + K +
Sbjct: 826 ------LLFEVREDNLDEASGTIRSLMEGA--LRLKVPLVVQVGQGKNW 866


>gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 854

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 97/637 (15%), Positives = 187/637 (29%), Gaps = 158/637 (24%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA--RSNGLP 106
               MP  L   LE   V         +   L     +     R     + +        
Sbjct: 355 SGSEMPFELSSWLERGSV------ITSDYKRLLVAMGVPSDYSRVWD--LRSVDYLLHPD 406

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            A   +   +     +  E + +     + +  + +  R                     
Sbjct: 407 KASHDMPSVMGDDCPESTEERAMALWRLRDDLSQTIESRGLSEV---------------- 450

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
               ++         +  L  +  ++   G  ++  +   +   +     ++ +E+ S  
Sbjct: 451 ----LYGI-------DMPLVPVLVSMEKSGIKLEEPVLQDVISDLKERLERIVEEITSAA 499

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK---LTPQAIQVFNNR 280
                +    +++   LF + GL     T+   +T   VL    +          +    
Sbjct: 500 G-ESINLNSPKQVGCLLFEKLGLPPVKKTKTGYSTDVTVLEQLAELPEPHNAVPSMLLEH 558

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
              S+ +      L+ ++  DG +R T +    + TGR S      QNLP          
Sbjct: 559 RALSKMSSGFALPLMSSVCGDGIIRSTFESDT-TGTGRLSSRDPNLQNLP---------- 607

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKL 399
                               SD ++S +I  E G+  V AD + +E RVLA ++GE+   
Sbjct: 608 ---------------AYGEWSDRIKSSLIPREKGRCFVAADYSQVELRVLAHISGEKRLA 652

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
             F +G D++  T +  F V  + VTK+ R   K++   L                    
Sbjct: 653 DIFRSGRDIHTETASMVFGVDSSMVTKELRRSAKMVTFGLL------------------- 693

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                       +    A       +  +R+   +      V  
Sbjct: 694 -------------------------YGMSAFGLAKRLGVGRSEADRIMSRYFAALPGVEA 728

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               + ++ ++ I  G                             GR     +V    + 
Sbjct: 729 Y---VTKSADEAIAKGYTETL-----------------------FGRIRPLEEVVTGNTR 762

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-----IVLTVHDEIVC 634
                R   R            +Q  + D+  + M+  +++  +     +VL VHD IVC
Sbjct: 763 DRGHIR---RVAINSP------IQGTAADLAKKAMIAVSRSFAEDPDVSMVLQVHDSIVC 813

Query: 635 ETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670
           E P+   E   + L  +M +  S A  +PL+ EG   
Sbjct: 814 ECPEERSEEVLAELQEIMKNVASLA--VPLETEGKIG 848


>gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 723

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 95/743 (12%), Positives = 204/743 (27%), Gaps = 193/743 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------DPV 52
           +D ET         G+  Y  +  ++       D P       H             +  
Sbjct: 88  LDVETT--------GLDIY--NDILVGICLYNPDLPSAYVPFNHTDLQNRRVEGQMTEEE 137

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALK 110
              V+   L N D+  + HN  F+  ++   +   I  + W  T + +          LK
Sbjct: 138 CKAVMLPYLANKDLKCINHNIKFDDKMITFNWGQRIA-NVWWDTNIASWVLNENEKHGLK 196

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +     L+ +  +E                      P +     +F  Y   D   T  
Sbjct: 197 PLYNKYILNGEGSDE-------------DFGDLFEGIPCNYIPIEIFSIYGANDGFKTWA 243

Query: 171 IFKRLEPLSSKE-----------------QELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           +++  +   + E                   L  +   +  RG  +    A  L+   + 
Sbjct: 244 LYQFQKQYLNPEAKRADYRKLYDVFMNVEMPLIDVCMDMELRGVEIREDYAKELSVKFNE 303

Query: 214 ERTK-----------LDQELESLT-------YGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           E  +            ++ ++               +    +++   L+    L      
Sbjct: 304 EMQEKEALCDAYVREFEEYIKENATLMRLTKGTCKINYNSPQQMACLLYDIFQLKSVSRK 363

Query: 256 ET--TCQRVLSSNKKLTPQAIQVFNNR-----------MRASRSAVLKLNTLVEAMN-SD 301
           E   T  +++  ++    +A      R               +     ++ +        
Sbjct: 364 EPRGTGDKIIQMHRNKAKKAGTKKGERFIEFLDNYQRYKECGKLLGTYIDKIPAVKCEKT 423

Query: 302 GRLRGTLQFLGASRTGRWSGCV----FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
             +  T    GA  TGR+S          QN+P   +S                      
Sbjct: 424 NAVHTTFNQYGA-VTGRFSSSDTVTKINLQNIPSHEKS---------------------- 460

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R    A +G KLV  D + IE RVLA+ +G++    A++ G+DLY    ++ +
Sbjct: 461 ------IRKIFKARDGYKLVGGDFSQIEPRVLAYFSGDEAMQNAYKEGKDLYAIMGSKVY 514

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            V                             ++      +N                   
Sbjct: 515 GVPYEDC------------------------REFYPDGTVNPEGKHRRTTM--------K 542

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
           +       +        +        +++   + +   +V +L  ++ +  E+       
Sbjct: 543 SVLLGIMYERGAQAIGEQFDKSAQWAQKLIDDFYKSFPKVQQLRLKIEKTAEE------- 595

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                 +    GR     D+  +                   + 
Sbjct: 596 -------------------YGYVTTIKGRKRRLPDMQLSNHDDYRYAEA-------HRQS 629

Query: 598 TENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFN-ASMLYHL 650
             +++Q  S DI+   M+   +          +++TVHDE++ E P+ +    A +L   
Sbjct: 630 LNSVIQGSSADIMKLAMIEIYRDPRYKELDCHMIITVHDELIMEVPEANVKVGAELLVST 689

Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673
           M         LP+  +   ++ +
Sbjct: 690 MKRVGHSLIDLPMSVDAEVNEYW 712


>gi|210135637|ref|YP_002302076.1| DNA polymerase I [Helicobacter pylori P12]
 gi|210133605|gb|ACJ08596.1| DNA polymerase I [Helicobacter pylori P12]
          Length = 903

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 92/615 (14%), Positives = 187/615 (30%), Gaps = 134/615 (21%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEG 126
           IV H+     + LKA + + +   R   T +LA            V              
Sbjct: 409 IVGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLREY--------LK 460

Query: 127 KELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
           +ELI     K    +            A +   EY +        +          E   
Sbjct: 461 EELIPHEKIKDFKIKAEKLELLSVELNALKRLCEYFEKGGLEENLLALAR----EIETPF 516

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   +  +G+ +D      L Q    E   L+ ++  L      +    ++L   L+ 
Sbjct: 517 VKVLMGMEFQGFKIDAPYFKRLEQEFKNELNILECQILDLIGVD-FNLNSPKQLGEILYE 575

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           + GL  ++ + +T ++ L       P    +   R   ++        L+   + D ++ 
Sbjct: 576 KLGLP-KNKSHSTDEKNLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIH 633

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T    G + TGR S      QN+P  S                              +R
Sbjct: 634 TTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIR 667

Query: 366 SCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
              IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      +
Sbjct: 668 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDL 724

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
            K++R+I K +                    G+                           
Sbjct: 725 AKEKRSIAKSIN--------------FGLVYGMG-------------------------- 744

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                 + +       +  +   +A+ ++   + +  N + +   +T +           
Sbjct: 745 ----SKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK----------- 789

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                               GR  V+ D      Y+            Y  +    I Q 
Sbjct: 790 ---------------AFTLLGRYRVF-DFNGVNDYIKGN---------YLREGVNAIFQG 824

Query: 605 VSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWA 658
            + D+L  GM+  ++         ++L VHDE++ E  + +       +  ++     + 
Sbjct: 825 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YP 883

Query: 659 KGLPLKAEGYESKRY 673
             +PL+   + + R+
Sbjct: 884 LRVPLETSAFVANRW 898


>gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254]
 gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254]
          Length = 370

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 64/468 (13%), Positives = 135/468 (28%), Gaps = 121/468 (25%)

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLS------SNKKLTPQ 272
           +  L  G   +    ++L   LF +  +     T+   +T   VL          +    
Sbjct: 6   IYKLADG-EFNIDSPQQLGEVLFEKLQIPSGKKTKTGYSTNVEVLEMIANNRELTEDKRM 64

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
             +         +     +  + +  + + R+  T    G + TGR S      QN+P  
Sbjct: 65  IGKKLLEYRAYKKLLSTYIEPIPKLADKEERIHTTFNQNG-TSTGRLSSANPNLQNIPVR 123

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +                              +R+  +A EG  L+  D + IE RVLA +
Sbjct: 124 TDDGIR-------------------------IRTGFVAKEGHSLISFDYSQIELRVLAEL 158

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++  +KA++  +DL+  T  + F                                   
Sbjct: 159 SKDRHLVKAYQDNQDLHDLTARKIFFKTEED----------------------------- 189

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                         + +          NF     +     + E         +    + +
Sbjct: 190 --------------EISRHERSIAKVINFSILYGKTPFGLSKELGITVQEASQYITTYFE 235

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           ++ RV +  + + +  +                           +  +    G       
Sbjct: 236 EYPRVRKFLDIVTETAK--------------------------LHGFVETFYGTRRYISG 269

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLT 627
           +            Q  R           +VQ  + +I+ + M+   +         ++L 
Sbjct: 270 INATN---KNIQAQAVRMA------VNTVVQGTAANIIKKVMIELHEEFKNDENIKMLLQ 320

Query: 628 VHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           VHDE++ E  D   +     +  +M +   + K +PLKA G  +K + 
Sbjct: 321 VHDELIFEVRDEFAKEYMKKIEKIMENTVKF-KKVPLKANGSVAKNWG 367


>gi|261840144|gb|ACX99909.1| DNA polymerase I (polA) [Helicobacter pylori 52]
          Length = 889

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 90/618 (14%), Positives = 191/618 (30%), Gaps = 138/618 (22%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQK 122
           I+ H+     + LKA + + +   R   T +LA            V +       +  +K
Sbjct: 393 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEK 452

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           +++ K            +            A +   EY +        +          E
Sbjct: 453 IKDFK---------TKSKAGKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----EVE 499

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
                +   +  +G+ +D      L Q    E   L++++  L      +    ++L   
Sbjct: 500 TPFMKVLMGMEFQGFKIDAPYFKRLEQEFKHELHVLERQILDLIGVD-FNLNSPKQLSEI 558

Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           L+ +  L  ++ + +T ++ L       P    +   R   ++        L+   + D 
Sbjct: 559 LYEKLELP-KNKSHSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDD 616

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           ++  T    G + TGR S      QN+P  S                             
Sbjct: 617 KIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL------------------------- 650

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   IAS +   L+  D + IE R+LA  + ++  + AF  G D+++ T    F    
Sbjct: 651 LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG--- 707

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
             + K++R+I K +                    G+                        
Sbjct: 708 EDLAKEKRSIAKSIN--------------FGLVYGMG----------------------- 730

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                    + +       +  +   +A+ ++   + +    L++  E+ ++  KA    
Sbjct: 731 -------SKKLSETLNIPLSEAKSYIEAYFKRFPSIKDY---LNRMKEEILKTSKAFTLL 780

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            R  V       D                  +  N                Y  +    I
Sbjct: 781 GRYRVFDFTGVNDH-----------------IKGN----------------YLREGVNAI 807

Query: 602 VQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNP 655
            Q  + D+L  GM+  ++         ++L VHDE++ E  + +       +  ++    
Sbjct: 808 FQGSASDLLKLGMLKVSERFKNNPLVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV 867

Query: 656 SWAKGLPLKAEGYESKRY 673
            +   +PL+   + +KR+
Sbjct: 868 -YPLRVPLETSAFMAKRW 884


>gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont
           phage 1]
          Length = 415

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 147/417 (35%), Positives = 225/417 (53%), Gaps = 16/417 (3%)

Query: 164 DVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           D+  TREI++ L   +    E   W LDQ IN RG C+DV LA +    V+ E+ +L   
Sbjct: 3   DILATREIYQHLPRWNMNVDETTLWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTV 62

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
            + LT   V ++   + L   +    G+ L D+  +T QR ++    + P   ++ + R+
Sbjct: 63  TQQLTDNAVQNATQRDALLQHITSAFGITLPDMQASTLQRRIND-PDIPPALRELLSIRL 121

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           ++ R++  K   L++++++DGRLRGT QF GASRTGRW+G +F P NLPRP+     +D 
Sbjct: 122 QSCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDPNTIDN 181

Query: 342 IITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
            I  L          D +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+
Sbjct: 182 GIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKV 241

Query: 400 KAFETGEDL-----YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            AF   ++      Y   YAR+FN+ P  VTK QR IGKVMEL LGY GG  AF   A  
Sbjct: 242 NAFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGGGVAAFLTFALA 301

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L+L   A+    N       +A ++ +   E    + +      T C+ +K+ WR  H
Sbjct: 302 YSLDLAELANAALPNIPLNVKREAISWYQKSVETDKTYGLSKKVFVT-CDSIKRMWRNAH 360

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           ++    W ++  A +Q I++       ++     + +++DK+ L + LPSGRSL Y 
Sbjct: 361 TQTVSFWYDIEDAVKQAIQSPGVAFKCRK-----LSVRRDKSWLRICLPSGRSLCYP 412


>gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
 gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109]
          Length = 879

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 102/686 (14%), Positives = 191/686 (27%), Gaps = 161/686 (23%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELW---------DCVHDPVMPQV-LKEALEN 63
             L K    +   D      A   D   + L          D        +  L+  L +
Sbjct: 324 NWLKKNAAYQEGRDAVAEALAVDIDGETLGLLSAENKGLKLDLAALDAKDEQVLRTWLAD 383

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALKLSS 120
                  H+S      L       +       T V A          +L  V +      
Sbjct: 384 RGAPKWFHDSKQSFHAL-RQQGFALDGVE-HDTSVAAYLVRPDLRSWSLGDVLQRH---- 437

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHRE--AWRLFGEYCKGDVTVTREIFKRLEPL 178
                G++L       E  + + +     ++E         Y   +V +T          
Sbjct: 438 ----AGRDLPENSGSLERAQAVRELVGIMNQELTDAGQAELYFSMEVPLT---------- 483

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
                   ++   +  RG  VD A    L    + +          L      +    ++
Sbjct: 484 --------HILAEMEARGIAVDKAALEELAADYEAQIADEVTAARELAEDDQLNLSSPKQ 535

Query: 239 LKTWLFLETGLHLEDLTE---TTCQRVLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNT 293
           L+  LF + GL     T+   +T    L   ++    P    +  +R    +     ++ 
Sbjct: 536 LQKVLFEDFGLPKTKKTKTGYSTAAAELEKLQQQTEHPFLNHLMAHR-EYQKMKST-IDG 593

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L+ A++ DGR+R T    GA+ TGR S      QN+P  + +  +               
Sbjct: 594 LINAIDGDGRIRTTFNQKGAA-TGRLSSSEPNLQNIPVRTEAGRK--------------- 637

Query: 354 PDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +RS     EG   L+ AD + IE RV+A ++ +   ++A+  GEDL+   
Sbjct: 638 ----------IRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYRAGEDLHNYV 687

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +R F+V   +VT + R   K +   L Y            +  L ++         +  
Sbjct: 688 GSRVFDVPVDEVTPELRRRVKALSYGLVYG-----LSAFGLSQQLGISPGEAKGIMENYF 742

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE----LWNELHQAF 528
           + +   + +   + E   E    +   G          R+    ++           +A 
Sbjct: 743 DRFGGVKRYLDKVVEAAKETGYTETLYGR---------RRYLPELASSNRVARENAERAA 793

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                 G A    K   + +                 R+L   ++ +             
Sbjct: 794 LNAPIQGTAADIIKLAMLRVD----------------RALRNANLKSRV----------- 826

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
                                    ++                +V E    +      L 
Sbjct: 827 -------------------------LLQVHDE-----------LVLEIAPGELEQIQQLL 850

Query: 649 HL-MTSNPSWAKGLPLKAEGYESKRY 673
              M S  S    +PL       + +
Sbjct: 851 EENMDSAAS--LRVPLDVSAGHGENW 874


>gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1]
 gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1]
          Length = 899

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 95/663 (14%), Positives = 200/663 (30%), Gaps = 140/663 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF ++D                    +     + L++  +  + H+     +
Sbjct: 357 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHACI--IGHDLKPLLS 413

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGE 137
            LKA + + +   R   T +LA           AV +          E  +      K E
Sbjct: 414 FLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDAVLKEYLKEDLIPHEKIKDFKTTSKAE 473

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
             E            A +   EY +        +          E     +   +  +G+
Sbjct: 474 KSE-----QLSLELNALKRLCEYFEKGGLEENLLSLAR----GVETPFVKVLMDMEFQGF 524

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +D      L Q    E   L++++  L      +    ++L   L+ +  L   + + +
Sbjct: 525 KIDAPYFKRLEQEFKDELKVLERQILDLIGVD-FNLNSPKQLSEVLYEKLELPQ-NKSHS 582

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T ++ L       P    +   R   ++        L+   + D ++  T    G + TG
Sbjct: 583 TDEKNLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATG 640

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376
           R S      QN+P  S                              +R   IAS +   L
Sbjct: 641 RLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYCL 675

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +  D + IE R+LA  + ++  ++AF  G D+++ T    F      + K++R+I K + 
Sbjct: 676 LGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKEKRSIAKSIN 732

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G+                                 + +   
Sbjct: 733 --------------FGLVYGMG------------------------------SKKLSETL 748

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +   +A+ ++   + +  N + +   +T +                       
Sbjct: 749 NISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK----------------------- 785

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                   GR  V+ D      Y+            Y  +    I Q  + D+L  GM+ 
Sbjct: 786 ---AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNAIFQGSASDLLKLGMLK 832

Query: 617 ATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYES 670
            ++         ++L VHDE++ E  + +       +  ++     +   +PL+   + +
Sbjct: 833 VSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFVA 891

Query: 671 KRY 673
            R+
Sbjct: 892 NRW 894


>gi|308172795|ref|YP_003919500.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605659|emb|CBI42030.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           amyloliquefaciens DSM 7]
          Length = 761

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 105/698 (15%), Positives = 197/698 (28%), Gaps = 140/698 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LWDCVHDP-------VMP 54
            + +D ET         G+  Y +   ++  +    +          H          + 
Sbjct: 139 IIAVDTETT--------GVDVYTDV--IVGLSLTLPNADWHVYIPVEHVDCEQLSRAYVL 188

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L     +  +  V HN+ F+  +L+     D+    W  T+          + +A+G 
Sbjct: 189 EGLAPVFNDESIGKVLHNAIFDIAMLRRH-GFDLKGVAW-DTMTAMHLLNENESDRALGG 246

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-- 172
           A      K    K L       +       RN         +   Y   D  +T +++  
Sbjct: 247 A-GSFKLKDLAPKYLKTPADTFDALFG---RNAQFKEVPLDIALVYAAKDTELTWKLYEF 302

Query: 173 -KRLEPLSSKEQELWY--------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL- 222
            +          + +         +   +   GY +D+  A    + +     +L +EL 
Sbjct: 303 QRYHMAKIPTILDYYQTVEIPLLYVIVDLEANGYILDLDFAKEYGEKLHKRAEELRKELV 362

Query: 223 ----ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
                        +     +++  L    G  L ++     ++ L   K       ++  
Sbjct: 363 AELTPFHEGDEPINLNSTHQMRPALSKAIGKDLSNMDA---KKTLKPLKDDYEIIAKLLE 419

Query: 279 NRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                 + +   ++TL    N    R       +G + TGR+S                 
Sbjct: 420 Y-KNIVKLSGTYIDTLPTKQNPTTERWHSRFNPMG-TVTGRFSS---------------- 461

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        T     +Q      R       GK LV AD    E R +A+++GE  
Sbjct: 462 ------GKDEEDKTQQGFNVQNQPPEARPMFGPPPGKLLVGADFKAQEIRCVAYLSGEPV 515

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKD-------QRAIGKVMELALGYQGGAKAFQK 450
            + AF    D Y T  +  +     +V K+       +R   KV  LA  Y     +   
Sbjct: 516 LINAFLEERDPYATMASNFYKRPHEEVYKNADGSDTKERKKMKVAWLATLYGMSDYSLAD 575

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
           M     L +                     + +  +E   ++                  
Sbjct: 576 M-----LGVGKKEATEFKEELFGSMPKLSAWLKENEEFVRKNGYVW-------------- 616

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                           A     +         R+++P       K              Y
Sbjct: 617 ----------------ADLNARKRRLPDAKLPRKNIPYGKWNDPK--------------Y 646

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIV 625
            D   + S +N    +  R+ T         VQ  S       M+ A      K G+ + 
Sbjct: 647 DDARKHNSRIN----RALRQATNAR------VQGSSSIQTKVTMIKAHEYCANKPGWALW 696

Query: 626 LTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLP 662
            TVHDE++ E P+      A  +  +M ++  W   +P
Sbjct: 697 STVHDELIFEVPEDFTWEEAQEIRDIMLNSYRWGDVVP 734


>gi|317179646|dbj|BAJ57434.1| DNA polymerase I [Helicobacter pylori F30]
          Length = 893

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 93/613 (15%), Positives = 189/613 (30%), Gaps = 128/613 (20%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           I+ H+     + LKA + + +   R   T +LA             E LK   ++     
Sbjct: 397 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKV--GFDEVLKEYLKEEWILH 454

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           E I  F      +            A +   EY      +   +F         E     
Sbjct: 455 EKIKDF--KTKSKAEKSEQLDRELNALKRLCEYF-EKGGLEEGLFALAR---EVETPFMK 508

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +  +G+ +D      L Q    E   L++++  L      +    ++L   L+ + 
Sbjct: 509 VLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEILYEKL 567

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
            L  ++ + +T ++ L       P    +   R   ++        L+   + D ++  T
Sbjct: 568 ELP-KNKSHSTDEKNLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTT 625

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
               G + TGR S      QN+P  S                              +R  
Sbjct: 626 FIQTG-TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKG 659

Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            IAS +   L+  D + IE R+LA  + ++  + AF  G D+++ T    F      + K
Sbjct: 660 FIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAK 716

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           ++R+I K +                    G+                             
Sbjct: 717 EKRSIAKSIN--------------FGLVYGMG---------------------------- 734

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
               + +          +   +A+ ++   + +  N + +   +T +             
Sbjct: 735 --SKKLSETLNIPLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSK------------- 779

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                             GR  V+ D      Y+            Y  +    I Q  +
Sbjct: 780 -------------AFTLLGRYRVF-DFTGANDYIKGN---------YLREGVNAIFQGSA 816

Query: 607 RDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKG 660
            D+L  GM+  ++         ++L VHDE++ E  + +       +  ++     +   
Sbjct: 817 SDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLR 875

Query: 661 LPLKAEGYESKRY 673
           +PL+   + +KR+
Sbjct: 876 VPLETSAFIAKRW 888


>gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7]
          Length = 885

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 91/617 (14%), Positives = 189/617 (30%), Gaps = 136/617 (22%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEG 126
           I+ H+     + LKA + + +   R   T +LA             E +      K    
Sbjct: 389 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLK 440

Query: 127 KELI-ARFCKGETHECLYDR--NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           +ELI     K        ++         A +    Y +        +          E 
Sbjct: 441 EELIPHEKIKDFKTTSKAEKLERLDMELNALKRLCAYFEKGGLEEGLLALAR----EVET 496

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
               +   +  +G+ +D      L Q    E   L++++  L      +    ++L   L
Sbjct: 497 PFVKVLMGMEFQGFKIDAPYFKRLEQEFKDELKVLERQILELIGVD-FNLNSPKQLSEVL 555

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           + +  L  ++ + +T ++ L       P    +   R   ++        L+   + D +
Sbjct: 556 YEKLELP-KNKSHSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDK 613

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +  T    G + TGR S      QN+P  S                              
Sbjct: 614 IHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL-------------------------L 647

Query: 364 VRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   IAS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F     
Sbjct: 648 IRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---G 704

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           ++ K++R+I K +                    G+                         
Sbjct: 705 ELAKEKRSIAKSINF--------------GLVYGMG------------------------ 726

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                   + +          +   +A+ ++   + +  N + +   +T +         
Sbjct: 727 ------SKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK--------- 771

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                 GR  V+   G N                Y  +    I 
Sbjct: 772 -----------------AFTLLGRYRVFDFTGANDYVKGN----------YLREGVNAIF 804

Query: 603 QAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656
           Q  + D+L  GM+  ++         ++L VHDE++ E  + +       +  ++     
Sbjct: 805 QGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV- 863

Query: 657 WAKGLPLKAEGYESKRY 673
           +   +PL+   + +KR+
Sbjct: 864 YPLRVPLETSAFMAKRW 880


>gi|308064229|gb|ADO06116.1| DNA polymerase I (polA) [Helicobacter pylori Sat464]
          Length = 893

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 94/663 (14%), Positives = 196/663 (29%), Gaps = 140/663 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF ++D                    +     + L++  +  + H+     +
Sbjct: 351 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 407

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGE 137
            LKA + + +   R   T +LA            V               E I  F    
Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVVREYLKEEL---IPHETIKDF--KT 462

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
             +            A +   EY +        +          E  L  +   +  +G+
Sbjct: 463 KSKVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAR----GVETPLMKVLMGMEFQGF 518

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +D      L Q    E   L++++  L      +    ++L   L+ +  L   + + +
Sbjct: 519 KIDAPYFKRLEQEFKNELHVLERQILDLIGVD-FNLNSPKQLSEILYEKLELPQ-NKSRS 576

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T ++ L       P    +   R   ++        L+   + D ++  T    G + TG
Sbjct: 577 TDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATG 634

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376
           R S      QN+P  S                              +R   IAS +   L
Sbjct: 635 RLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYCL 669

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           +  D + IE R+LA  + ++  + AF  G D+++ T    F      + K++R+I K + 
Sbjct: 670 LGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSIN 726

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
                              G+                                 + +   
Sbjct: 727 --------------FGLVYGMG------------------------------SKKLSETL 742

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  +   +A+ ++   + +    + +   +T +                       
Sbjct: 743 NIPLNEAKSYIEAYFKRFPSIKDYLKRMKEEILKTSK----------------------- 779

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                   GR  V+   G N                Y  +    I Q  + D+L  GM+ 
Sbjct: 780 ---AFTLLGRYRVFDFAGVNDHIKGN----------YLREGVNAIFQGSASDLLKLGMLK 826

Query: 617 ATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYES 670
            ++         ++L VHDE++ E  + +       +  ++     +   +PL+   + +
Sbjct: 827 VSERFKNNPSVRLLLQVHDELIFEIEEKNALKLQQEIQRILNDEV-YPLRVPLETSAFMA 885

Query: 671 KRY 673
           KR+
Sbjct: 886 KRW 888


>gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group]
          Length = 1000

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/772 (12%), Positives = 199/772 (25%), Gaps = 163/772 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53
             D E    +               VI F+           F +    +W         +
Sbjct: 285 ACDTE----VANIDVKQETPVSHGEVICFSIYSGNSDAEADFGNGKTCIWVDVLDGGRDV 340

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106
                   E+  +  V HN  F+  V++      I +  +   T+ LAR           
Sbjct: 341 LMEFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRIDGG 397

Query: 107 SALKAVGEALKL----SSQKMEEGKELIARFC--KGETHECLYDRNKPNHRE------AW 154
            +L+ +    ++      +  + GK  +      K    +    +               
Sbjct: 398 YSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDR 457

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSS--------------------KEQELWYLDQTIND 194
            ++  Y   D   T  +++ L+                          +    L   +  
Sbjct: 458 EMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYEEYWRPFGALLVKMET 517

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244
            G  VD      + ++   +R     +               +     +++   F     
Sbjct: 518 AGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIEN 577

Query: 245 -LETGLHLED--LTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             + G  L      +      +++  KK          + +   ++ +   +        
Sbjct: 578 RCKPGETLPKSRTIKVPNDGSLIAEGKKTPKYCTIELFSIVEDLKTDLFTASGWPSVSGD 637

Query: 301 D-----GRLRGTLQFLGASRTGRWSG-CVFPPQNLPRPSRSHEELD-------------- 340
                 G+L   L +         SG       +L   +      +              
Sbjct: 638 ALRSLAGKLPTDLVYTTDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHA 697

Query: 341 ----------QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
                       +         +   L+     +R   +A+ G  L+VAD   +E R+LA
Sbjct: 698 IAALCEICSIDSLISNFILPLQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILA 757

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +A  +  L AF+ G D +  T    +      V +                   K   +
Sbjct: 758 HLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKVLLE 799

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G        L     A        NF     +     A +        +   K W
Sbjct: 800 WHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLW 859

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            +    V     +  +  ++  E                               GRS  +
Sbjct: 860 YRDRKEVLAWQMKQKELAQEKCEVY--------------------------TLLGRSRRF 893

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDI 624
            ++ +  S        + R            VQ  + D+    M+   +       G+ +
Sbjct: 894 PNMAHATSGQRGH---IERAAINAP------VQGSAADVAMCAMLEIDRNARLKELGWRL 944

Query: 625 VLTVHDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
           +L VHDE++ E P ++ +   S++   M+     +    + L  +   ++ +
Sbjct: 945 LLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 996


>gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 911

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/673 (13%), Positives = 188/673 (27%), Gaps = 134/673 (19%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-------- 58
           D+E  S   L    + +      +I      +       D  +        +        
Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTD 377

Query: 59  ----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
               E L N+++    ++      +LK      +  +     +V   S         +  
Sbjct: 378 SLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANVV-SDLSN 436

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +KL    + E + +   F KG       D +  +   + + +      D  + +     
Sbjct: 437 QIKL-VDNLIELETIDQIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTN 495

Query: 175 LEP-LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV--- 230
                   +  L  +   I  +G  +D        Q +  +   ++ +++ L    +   
Sbjct: 496 TYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEIDNN 555

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++++  LF +  L   +   TT + VL       P    +  +R + ++     
Sbjct: 556 FNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITYHPIINLLLEHR-KYTKLYTTY 613

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L    + +  D ++         + TGR S      QN+       +E            
Sbjct: 614 LKGFEKFIFDDSKVHTIFN-HTLTNTGRLSSSYPNIQNISIRDNEQKE------------ 660

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        VR   I +  K  +  D + IE RVLA M+ E   + AF    D+++
Sbjct: 661 -------------VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHL 707

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
                 FN++  Q+T +QR I KV                     GL             
Sbjct: 708 QAAKLIFNLSDDQITSEQRRIAKVFN--------------FGILYGLTDFGL-------- 745

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                 A +        +++ K +      + E      +  E 
Sbjct: 746 ----------------------ASDLNISVNQAKQMIKDYYSAFPSLLEFK---EKQVEI 780

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
               G                            S R     ++ +    +    +++   
Sbjct: 781 ATSQGYITTL-----------------------SNRRRYINELNSTNHNIRQFGKRI--- 814

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DIL   M++  K          IV  +HDEI+ E  D      
Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQT 868

Query: 645 SML-YHLMTSNPS 656
             +    + +   
Sbjct: 869 KRIVVSELENALE 881


>gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
 gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum
           DSM 5476]
          Length = 890

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 79/498 (15%), Positives = 152/498 (30%), Gaps = 107/498 (21%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   + + G+ VDVA   T  +++ VE  ++ QE+     G   +     +L
Sbjct: 491 DIELPLSEVLANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYG-YAGEEFNINSTREL 549

Query: 240 KTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
              LF + GL     T+   +T   VL       P A  V   R + ++ +   +  L++
Sbjct: 550 GAILFDKLGLPTGKKTKTGYSTNVDVLEKLIPKHPIAGLVLEYR-KLTKLSSTYVTGLLK 608

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
               D R+    +    +RTGR S      QN+P  +                       
Sbjct: 609 VTGPDQRVHSVFRQ-TETRTGRISSTEPNMQNIPIRTE---------------------- 645

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +   +R   +A  G  L+ AD + IE R+LA ++ +   + AF  G D++  T ++ 
Sbjct: 646 ---LGSQMRKFFVAKPGCVLLDADYSQIELRILAHISNDSRMITAFREGADIHTATASQV 702

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F V    +  + R   K +   + Y  GA +  +      +N++         +    + 
Sbjct: 703 FGVPAEVLPAELRRRAKAINFGIVYGIGAYSLSQ-----DINVSVAEAKEYIENYLHTYS 757

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
               +   + E+  +        G      +      +           +    T   G 
Sbjct: 758 GVRQYMNDIVESSAKSGYVKTMFGRVRHLPEIT--SSNHNTKAFG---ERVALNTPIQGT 812

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
           A    K   V +                     YR +                       
Sbjct: 813 AADIIKIAMVKV---------------------YRRLKEE-------------------- 831

Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655
                   +S  ++    +               E++ E    D   A ++    M    
Sbjct: 832 -------GLSAQLI----LQVHD-----------ELLIEVSKADAPRAKVILKEEMEHAA 869

Query: 656 SWAKGLPLKAEGYESKRY 673
                +PL  +  E + +
Sbjct: 870 D--LSVPLSVDVSEGENW 885


>gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 836

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 98/589 (16%), Positives = 171/589 (29%), Gaps = 143/589 (24%)

Query: 98  VLARSNGLPSA---LKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREA 153
           +++    LP     +        L   +    G++L++    G+ +         +    
Sbjct: 369 LISALGDLPRGCSVMDLKLCYYGLHPDRTAVMGRDLVSGALSGQWNPWTLWDQIRSDPL- 427

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           W    E       VTR            +  L  +   +   G  +DV     L + ++ 
Sbjct: 428 WEGVRE------LVTR-----------VDHPLSAVLVDMEREGIGLDVEGLRGLRERLER 470

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT 270
               L++ +       V + +  +++   LF   GL     T+   +T   VL    +L 
Sbjct: 471 ALGALEEGIAREAGAQV-NLQSPKQVAWLLFERLGLPPVKRTKTGLSTDVGVLEELSRLP 529

Query: 271 P---QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
               +   +       S+     +N  +E   S G +R T    G + TGR S      Q
Sbjct: 530 EPLGRVPSMILEHREISKLITAFVNPFLEQ-GSSGVIRSTFDQTG-TGTGRLSSRDPNVQ 587

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEA 386
           NLP+                             +   R C++   EG   V AD + IE 
Sbjct: 588 NLPQ-------------------------FGHWAVEFRRCLVPVEEGNVFVSADYSQIEL 622

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA ++GE+  ++AFE G D++  T +  + V P  V+ +Q                  
Sbjct: 623 RVLAHLSGEERLIRAFEEGADVHARTASWIYGVDPQAVSPEQ------------------ 664

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                                       +    NF           A       +    V
Sbjct: 665 --------------------------RRFAKVVNFGLLYGMGAHGLAQRMGVSRSEAAEV 698

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + +      V E    + +  +                                   GR
Sbjct: 699 MERYFSALPGVREFTRRMVEQAK--------------------------ARGYAATLMGR 732

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GY 622
                +V    +        + R            +Q  + DI  + M+   +A      
Sbjct: 733 VRPLSEVS---TVEGRGAGAIDRVAINTP------IQGSAADIARKAMVELHRALAGGDC 783

Query: 623 DIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYES 670
            +VL VHD IVC  P+      + L   +M    S    +PL  E    
Sbjct: 784 RMVLQVHDSIVCSVPEGMASRVAELMREVMEGAAS--LSVPLVVEVKTG 830


>gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Eubacterium rectale DSM 17629]
          Length = 724

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/744 (12%), Positives = 201/744 (27%), Gaps = 187/744 (25%)

Query: 9   ETR------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
           ET         +D+   G+  Y  +  ++       D P       H             
Sbjct: 76  ETYLTGVSEYVLDVETTGLDVY--NDILVGICLYNPDLPSFYVPFNHTDLQNKRVEGQMT 133

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
           +     V+   L N  +  + HN  F+  V+   +   I  + W  T +           
Sbjct: 134 EEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRIA-NVWWDTNIAGWVLNENEKH 192

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                 LK    K       I      +          P +     +F  Y   D   T 
Sbjct: 193 -----RLKPMYNKY------ILNGEGSDEDFGDLFEGIPCNYIPIDIFAIYGANDGFKTW 241

Query: 170 EIFKRLEPLSSKEQEL-----------------WYLDQTINDRGYCVDVALAHTLNQIVD 212
            +++  +    ++                      +   +  RG  +    A  L+   +
Sbjct: 242 ALYQFQKKYLREDHPRADYRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFN 301

Query: 213 VERTKLDQELESL------------------TYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            E  + ++  +                          +    +++    +    L     
Sbjct: 302 AEMAEKEKLCDEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSR 361

Query: 255 TET--TCQRVLSSNKKL---------TPQAIQVFNN--RMRASRSAVLKLNTLVEA-MNS 300
            E   T  +++  ++                 + N        +     ++ + E     
Sbjct: 362 KEPRGTGDKIVQQHRNKAKKAGTKKGEEFIQFLDNYQRYKECGKLLGTYIDKIPEVKCAK 421

Query: 301 DGRLRGTLQFLGASRTGRWSGCV----FPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
              +  T    GA +TGR+S          QN+P   +S                     
Sbjct: 422 TNAVHTTYNQYGA-KTGRFSSSDTVTKINLQNIPSHEKS--------------------- 459

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R    A +G K V  D + IE RVL++++G++   +A+  G+DLY    ++ 
Sbjct: 460 -------IRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKV 512

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           + V                             ++      +N                  
Sbjct: 513 YGVPYEDC------------------------REFYPDGTVNAEGKHRRTTM-------- 540

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            +       +        +        +++   + +   ++ +L  ++ +  E+      
Sbjct: 541 KSVLLGIMYERGAKAIGEQFDKSAEWAQKLIDDFYKSFPKIQQLRLKVEKMAEEY--GYV 598

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
             I  ++R +P            + LP      Y++                       +
Sbjct: 599 TTIQGRKRRLPE-----------MQLPDHDDYRYQEAH--------------------RQ 627

Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFN-ASMLYH 649
               ++Q  S DI+   M+              +V+TVHDE++ E P+      A +L +
Sbjct: 628 SLNAVIQGSSADIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPEDHIKEGADLLVN 687

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
            M         LP+  +   +  +
Sbjct: 688 TMKRVGHSLIDLPMSVDAEVNDYW 711


>gi|315585859|gb|ADU40240.1| DNA-directed DNA polymerase I [Helicobacter pylori 35A]
          Length = 893

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/667 (13%), Positives = 204/667 (30%), Gaps = 148/667 (22%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF ++D                    +     + L++  +  + H+     +
Sbjct: 351 KEKKVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 407

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQKMEEGKELIARF 133
            LKA + + +   R   T +LA            V +       +  +K+++ K      
Sbjct: 408 FLKAKYQVSVEDIRIQDTQILAFLKNPEKVGFDEVLKQYLKEEWIPHEKIKDFK------ 461

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                ++            A +   EY +        +          E     +   + 
Sbjct: 462 ---TKNKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALAR----EVETPFVKVLMGME 514

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
            +G+ +D      L Q    E   L++++  L      +    ++L   L+ +  L  ++
Sbjct: 515 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEILYEKLELP-KN 572

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            + +T ++ L       P    +   R   ++        L+   + D ++  T    G 
Sbjct: 573 KSHSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 630

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           + TGR S      QN+P  S                              +R   I+S +
Sbjct: 631 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFISSSK 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+  D + IE R+LA  + ++  + AF  G D+++ T    F      + K++R+I 
Sbjct: 666 EYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIA 722

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G+                                 + 
Sbjct: 723 KSIN--------------FGLVYGMG------------------------------SKKL 738

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           +          +   +A+ ++   + +  N + +   +T +                   
Sbjct: 739 SETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSK------------------- 779

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR  V+  VG N                Y  +    I Q  + D+L  
Sbjct: 780 -------AFTLLGRYRVFDFVGVNDHIKGN----------YLREGVNAIFQGSASDLLKL 822

Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAE 666
           GM+  ++         ++L VHDE++ E  + +       +  ++     +   +PL+  
Sbjct: 823 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQREIQRILNDEV-YPLRVPLETS 881

Query: 667 GYESKRY 673
            + +KR+
Sbjct: 882 AFIAKRW 888


>gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4]
          Length = 773

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 206/388 (53%), Gaps = 19/388 (4%)

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           + LT   V ++   + L   +    G+ L D+  +T QR ++    + P   ++ + R++
Sbjct: 9   QQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRIND-PDIPPALRELLSVRLQ 67

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           +  ++  K   L++++++DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  
Sbjct: 68  SCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNG 127

Query: 343 ITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
           I  L          D +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ 
Sbjct: 128 IEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVN 187

Query: 401 AFETGEDL-----YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           AF   ++      Y   YAR+FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   
Sbjct: 188 AFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAY 247

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           GL+L+  A     N       +A  + +   E    + + +    T C+ +K+ WR  H 
Sbjct: 248 GLDLDELAEAALPNIPLGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHP 306

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           +    W ++  A +Q I++       ++     + +++DK  L + LPSGRSL Y     
Sbjct: 307 QTVSFWYDIEDAVKQAIQSPGIAFKCRK-----LSVRRDKGWLRICLPSGRSLCYPSARI 361

Query: 576 NR---SYLNT--TTRQLTREYTYGGKLT 598
                +Y+ T   +R+  R  TYGGKL 
Sbjct: 362 ENGQITYMGTNPYSRKWERLKTYGGKLC 389



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 54/78 (69%)

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI Q+ +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  W
Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 754

Query: 658 AKGLPLKAEGYESKRYRK 675
           A  LPL A G+E+ RYRK
Sbjct: 755 AWDLPLSANGFETYRYRK 772


>gi|317182675|dbj|BAJ60459.1| DNA polymerase I [Helicobacter pylori F57]
          Length = 893

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 95/667 (14%), Positives = 204/667 (30%), Gaps = 148/667 (22%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           ++  V+  AF  +D                    +     + L++  +  + H+     +
Sbjct: 351 KEKKVLALAFLLEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLS 407

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL----KLSSQKMEEGKELIARF 133
            LKA + + +   R   T +LA            V +       +  +K+++ K      
Sbjct: 408 FLKAKYQVSLEDIRIQDTQILAFLKNPEKVGFDEVLKQYLKEEWIPHEKIKDFK------ 461

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                 +            A +   EY +        +          E     +   + 
Sbjct: 462 ---TKSKAGKLELLSVELNALKRLCEYFEKGGLEEGLLALAR----EVETPFMKVLMGME 514

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
            +G+ +D      L Q    E   L++++  L      +    ++L   L+ + GL  ++
Sbjct: 515 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVD-FNLNSPKQLSEILYEKLGLP-KN 572

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            + +T ++ L       P    +   R   ++        L+   + D ++  T    G 
Sbjct: 573 KSHSTDEKSLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG- 630

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           + TGR S      QN+P  S                              +R   IAS +
Sbjct: 631 TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSK 665

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+  D + IE R+LA  + ++  + AF  G D+++ T    F      + K++R+I 
Sbjct: 666 EYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIA 722

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +                    G+                                 + 
Sbjct: 723 KSIN--------------FGLVYGMG------------------------------SKKL 738

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           +          +   +A+ ++ S + +  N + +   +T +                   
Sbjct: 739 SETLNIPLNEAKSYIEAYFKRFSSIKDYLNRMKEEILKTSK------------------- 779

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       GR  V+ D      Y+            Y  +    I Q  + D+L  
Sbjct: 780 -------AFTLLGRYRVF-DFTGANDYIKGN---------YLREGVNAIFQGSASDLLKL 822

Query: 613 GMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           GM+  ++         ++L VHDE++ E  + +       +  ++     +   +PL+  
Sbjct: 823 GMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETS 881

Query: 667 GYESKRY 673
            + +KR+
Sbjct: 882 AFMAKRW 888


>gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 686

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 102/357 (28%), Gaps = 79/357 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------- 53
             + +D ET +   ++            ++  +FG  +         H   +        
Sbjct: 356 KLVAVDTETDNLDSMS----------ANLVGISFGLANGEACYIPLTHKEQVTLEPQQSD 405

Query: 54  --------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
                                        LK  LE+ DV  +  N  ++ T+        
Sbjct: 406 LFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH---G 462

Query: 88  IPIHRW-ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           + +      T++ + +        +  + +           G + I      E       
Sbjct: 463 VQVEGVAFDTMLESYTLNSTGRHNMDELADRY--------LGHKTIEF----EEIAGKGK 510

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-----------KEQELWYLDQTIN 193
                 + A  +  +Y   D  VT ++ + L P               E  L  +   I 
Sbjct: 511 NQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIE 570

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  +D       +  ++   ++L+Q + S     + +    ++L+  LF + GL +  
Sbjct: 571 RNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAG-EIFNLASTKQLQEILFTKLGLPVLK 629

Query: 254 LTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLR 305
            T     +T + VL           ++       S+      + L   +N   GR+ 
Sbjct: 630 KTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVH 686


>gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
 gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748]
          Length = 873

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/593 (15%), Positives = 167/593 (28%), Gaps = 131/593 (22%)

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              R     +LA                            L  RF          D    
Sbjct: 400 NTARIHDMSLLAYLLDPTRTN------YGYL--------YLTERFSVPSIASGSVDVECV 445

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
           +  +A     E          E++   E   + E  L +    +   G  +D        
Sbjct: 446 SMVKALLAMNEVACESARRE-ELWSLYE---TIELPLIHTLVVMEKNGIYIDTNKLAETT 501

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
                E  ++ QE+  L      +    ++L   LF +  L +   T+   +T   VL  
Sbjct: 502 ARFKDELAQVQQEIYDLAG-ETFNINSPKQLGVILFEKMNLPVIKKTKTGYSTDAEVLDM 560

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +  +P   ++   R   ++     L  L   +N   +   T      + TGR S     
Sbjct: 561 LRNESPIVEKILAYR-SVAKLVSTYLEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPN 619

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGI 384
            QN+P  +    E                         +R+      G   LV AD + I
Sbjct: 620 LQNIPVRTEKGRE-------------------------IRALFYPGAGYDTLVSADYSQI 654

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E R+LA ++G++  +KAF  G+D++  T A     A   VT ++R+  K +   + Y   
Sbjct: 655 ELRILAHLSGDEALIKAFVDGKDIHRFTAAEVLGKAQEDVTSEERSHAKAINFGIIYGIS 714

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                    +  L +         +     +   + +   M +   E             
Sbjct: 715 -----DFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMF----- 764

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                                                ++R++P +  +            
Sbjct: 765 ------------------------------------GRQRELPDINSRNFNRRSF----- 783

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV-QAVSRDILAEGMMNATKAGYD 623
                       R+ +NT  +          KL  N V Q               +  + 
Sbjct: 784 ----------AERTAMNTPIQG---TAADIIKLAMNQVEQ------------KLEEGNFK 818

Query: 624 --IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
             ++L VHDE+V E  + +      L    M S       +PL  + + ++ +
Sbjct: 819 SRLLLQVHDELVLEVVNEELEAVEELLRSTMQSVVE--LHVPLIVDVHHAENW 869


>gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5]
          Length = 773

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 208/388 (53%), Gaps = 19/388 (4%)

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           + LT   V ++   + L   +    G+ L D+  +T QR ++    + P   ++ + R++
Sbjct: 9   QQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQ 67

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           +  ++  K   L++++++DGRLRGT QF GASRTGRW+G VF P NLPRP+     +D  
Sbjct: 68  SCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNG 127

Query: 343 ITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
           I  L          D +Q+ S  +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+K
Sbjct: 128 IEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVK 187

Query: 401 AFETGEDL-----YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           AF   ++      Y   YAR+FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   
Sbjct: 188 AFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAY 247

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           GL+L+  A     +  P    +A ++ +   E    + + +      C+ +K+ WR  H 
Sbjct: 248 GLDLDELAEAALPHIPPGVKREATSWYQKSVETDKTYGLSEKIFVN-CDSLKRMWRNAHP 306

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           +    W ++  A +Q I++       ++     + +++DK  L + LPSGRSL Y     
Sbjct: 307 QTVSFWYDIEDAVKQAIQSPGIAFKCRK-----LSVRRDKGWLRICLPSGRSLCYPSARI 361

Query: 576 NR---SYLNT--TTRQLTREYTYGGKLT 598
                +Y+ T   +R+  R  TYGGKL 
Sbjct: 362 ENGQITYMGTNPYSRKWERLKTYGGKLC 389



 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 54/78 (69%)

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI Q+ +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  W
Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSHW 754

Query: 658 AKGLPLKAEGYESKRYRK 675
           A  LPL A G+E+ RYRK
Sbjct: 755 AWDLPLSANGFETYRYRK 772


>gi|312874207|ref|ZP_07734241.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
 gi|311090277|gb|EFQ48687.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d]
          Length = 883

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 85/665 (12%), Positives = 188/665 (28%), Gaps = 141/665 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
                F+       + + D   D  + Q   LK+ LE+ ++     +       L+    
Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           + +  +     ++ +      +        L + +   +E           E       +
Sbjct: 392 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 441

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195
               H         +    V V  ++  ++ P   + +           +  +   +   
Sbjct: 442 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 498

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  V       +   +DV  T L  ++  L      +    ++L   LF +  L     T
Sbjct: 499 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTPAKKT 557

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL   +  +P    + + R   S+     +N L++ + +DG++        
Sbjct: 558 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 615

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371
            + TGR S      QN+P      +                          +R   +   
Sbjct: 616 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 650

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           +   L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT   R 
Sbjct: 651 QDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRR 710

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y               L ++        N+  E++   +++ +   +   
Sbjct: 711 HAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAR 765

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           E    +  +     R+      K+  +        +    +   G A    K        
Sbjct: 766 EKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI------- 813

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                                        +     +L R                    L
Sbjct: 814 ----------------------------AMIKMQSELERRK------------------L 827

Query: 611 AEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              M+                 ++ + P  +     +L   +M         +PL A+  
Sbjct: 828 KTKMILQIHDE-----------LLFDVPSEELDLIKILVPKIMQQAAQ--LDVPLIADAN 874

Query: 669 ESKRY 673
               +
Sbjct: 875 WGHNW 879


>gi|308185239|ref|YP_003929372.1| DNA polymerase I [Helicobacter pylori SJM180]
 gi|308061159|gb|ADO03055.1| DNA polymerase I [Helicobacter pylori SJM180]
          Length = 897

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 94/664 (14%), Positives = 199/664 (29%), Gaps = 144/664 (21%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLKEALENTDVTIVAHNSYFERT 78
           +D  ++  AF   D                    +     + L++  +  + H+     +
Sbjct: 357 KDKKILALAFLLQDQ-GYFLPLEEALFSPFSLEFLQNAFSQMLQHAQI--IGHDLKPLLS 413

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEGKELI-ARFCKG 136
            LKA + + +   R   T +LA             E +      K    +ELI     K 
Sbjct: 414 FLKAKYQVPLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLKEELIPHEKIKD 465

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
              +            A +   EY +        +          E     +   +  +G
Sbjct: 466 FKTKAEKLELLSVELNALKRLCEYFEKGGLEEGLLSLAR----GVETPFMKVLMGMEFQG 521

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
           + +D      L Q    E   L++++  L      +    ++L   L+ +  L  ++ + 
Sbjct: 522 FKIDAPYFKRLEQEFKNELHVLERQILDLIGVD-FNLNSPKQLGEVLYEKLELP-KNKSH 579

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T ++ L       P    +   R   ++        L+   + D ++  T    G + T
Sbjct: 580 STDEKNLLKILDKHPSIPLILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TAT 637

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P  S                              +R   IAS +   
Sbjct: 638 GRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFIASSKEYC 672

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      + K +R+I K +
Sbjct: 673 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKKKRSIAKSI 729

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G+                                 + +  
Sbjct: 730 N--------------FGLVYGMG------------------------------SKKLSET 745

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                +  +   +A+ ++   + +  N + +   +T +                      
Sbjct: 746 LNIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSK---------------------- 783

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                    GR   + D      Y+            Y  +    I Q  + D+L  GM+
Sbjct: 784 ----AFTLLGRYRAF-DFTGANDYIKGN---------YLREGVNAIFQGSASDLLKLGML 829

Query: 616 NATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669
             ++         ++L VHDE++ E  + +       +  ++     +   +PL+   + 
Sbjct: 830 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFV 888

Query: 670 SKRY 673
           + R+
Sbjct: 889 ANRW 892


>gi|309803215|ref|ZP_07697312.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
 gi|308164723|gb|EFO66973.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d]
          Length = 883

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 85/665 (12%), Positives = 187/665 (28%), Gaps = 141/665 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
                F+       + + D   D  + Q   LK+ LE+ ++     +       L+    
Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           + +  +     ++ +      +        L + +   +E           E       +
Sbjct: 392 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 441

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195
               H         +    V V  ++  ++ P   + +           +  +   +   
Sbjct: 442 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 498

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  V       +   +DV  T L  ++  L      +    ++L   LF +  L     T
Sbjct: 499 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTPAKKT 557

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL   +  +P    + + R   S+     +N L++ + +DG++        
Sbjct: 558 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 615

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371
            + TGR S      QN+P      +                          +R   +   
Sbjct: 616 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 650

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           +   L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT   R 
Sbjct: 651 QDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRR 710

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y               L ++        N+  E++   +++ +   +   
Sbjct: 711 HAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAR 765

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           E    +  +     R+      K+  +        +    +   G A    K        
Sbjct: 766 EKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI------- 813

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                                        +     +L R                    L
Sbjct: 814 ----------------------------AMIKMQSELERRK------------------L 827

Query: 611 AEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              M+                 ++ + P  +      L   +M         +PL A+  
Sbjct: 828 KTKMILQIHDE-----------LLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIADAN 874

Query: 669 ESKRY 673
               +
Sbjct: 875 WGHNW 879


>gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 911

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/673 (13%), Positives = 189/673 (28%), Gaps = 134/673 (19%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-------- 58
           D+E  S   L    + +      +I      +       D  +        +        
Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTD 377

Query: 59  ----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
               E L N+++    ++      +LK      +  +     +V   S         +  
Sbjct: 378 SLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANVV-SDLSN 436

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +KL    + E + +   F KG       D +  +   + + +      D  + +     
Sbjct: 437 QIKL-VDNLIELETIDEIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTN 495

Query: 175 LEP-LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV--- 230
                   +  L  +   I  +G  +D        Q +  +   ++ +++ L    +   
Sbjct: 496 TYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEWQMKILVAEEIDNN 555

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++++  LF +  L   +   TT + VL       P    +  +R + ++     
Sbjct: 556 FNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITYHPIINLLLEHR-KYTKLYTTY 613

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L    + +  D ++         + TGR S      QN+       +E            
Sbjct: 614 LKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNISIRDNEQKE------------ 660

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        VR   I +  K  +  D + IE RVLA M+ E   + AF    D+++
Sbjct: 661 -------------VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHL 707

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
                 FN++  Q+T +QR I KV                     GL     A  +  N 
Sbjct: 708 QAAKLIFNLSDDQITSEQRRIAKVFN--------------FGILYGLTDFGLASDLNMN- 752

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                            +++ K +      + +      +  E 
Sbjct: 753 -----------------------------VNQAKQMIKDYYSAFPSLLDFK---EKQVEI 780

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
               G                            S R     ++ +    +    +++   
Sbjct: 781 ATSKGYITTL-----------------------SNRRRYINELNSTNHNIRQFGKRI--- 814

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DIL   M++  K          I+  +HDEI+ E  D      
Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKLKEQNLDAKIICQIHDEIILEVDDNQLEQT 868

Query: 645 SML-YHLMTSNPS 656
             +    + +   
Sbjct: 869 KKIVVSELENALE 881


>gi|259500513|ref|ZP_05743415.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
 gi|259167897|gb|EEW52392.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335]
          Length = 890

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 85/665 (12%), Positives = 187/665 (28%), Gaps = 141/665 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
                F+       + + D   D  + Q   LK+ LE+ ++     +       L+    
Sbjct: 344 AQYAGFSVKI-KQKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 398

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           + +  +     ++ +      +        L + +   +E           E       +
Sbjct: 399 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 448

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195
               H         +    V V  ++  ++ P   + +           +  +   +   
Sbjct: 449 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 505

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  V       +   +DV  T L  ++  L      +    ++L   LF +  L     T
Sbjct: 506 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTPAKKT 564

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL   +  +P    + + R   S+     +N L++ + +DG++        
Sbjct: 565 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 622

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371
            + TGR S      QN+P      +                          +R   +   
Sbjct: 623 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 657

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           +   L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT   R 
Sbjct: 658 QDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRR 717

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y               L ++        N+  E++   +++ +   +   
Sbjct: 718 HAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAR 772

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           E    +  +     R+      K+  +        +    +   G A    K        
Sbjct: 773 EKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI------- 820

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                                        +     +L R                    L
Sbjct: 821 ----------------------------AMIKMQSELERRK------------------L 834

Query: 611 AEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              M+                 ++ + P  +      L   +M         +PL A+  
Sbjct: 835 KTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADAN 881

Query: 669 ESKRY 673
               +
Sbjct: 882 WGHNW 886


>gi|312875574|ref|ZP_07735575.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
 gi|311088828|gb|EFQ47271.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b]
          Length = 883

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 85/665 (12%), Positives = 187/665 (28%), Gaps = 141/665 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
                F+       + + D   D  + Q   LK+ LE+ ++     +       L+    
Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           + +  +     ++ +      +        L + +   +E           E       +
Sbjct: 392 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 441

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195
               H         +    V V  ++  ++ P   + +           +  +   +   
Sbjct: 442 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 498

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  V       +   +DV  T L  ++  L      +    ++L   LF +  L     T
Sbjct: 499 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTPAKKT 557

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL   +  +P    + + R   S+     +N L++ + +DG++        
Sbjct: 558 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 615

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371
            + TGR S      QN+P      +                          +R   +   
Sbjct: 616 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 650

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           +   L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT   R 
Sbjct: 651 QDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRR 710

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y               L ++        N+  E++   +++ +   +   
Sbjct: 711 HAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAR 765

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           E    +  +     R+      K+  +        +    +   G A    K        
Sbjct: 766 EKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI------- 813

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                                        +     +L R                    L
Sbjct: 814 ----------------------------AMIKMQSELERRK------------------L 827

Query: 611 AEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              M+                 ++ + P  +      L   +M         +PL A+  
Sbjct: 828 KTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADAN 874

Query: 669 ESKRY 673
               +
Sbjct: 875 WGHNW 879


>gi|302191203|ref|ZP_07267457.1| DNA polymerase I [Lactobacillus iners AB-1]
          Length = 883

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 85/665 (12%), Positives = 187/665 (28%), Gaps = 141/665 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
                F+       + + D   D  + Q   LK+ LE+ ++     +       L+    
Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           + +  +     ++ +      +        L + +   +E           E       +
Sbjct: 392 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 441

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195
               H         +    V V  ++  ++ P   + +           +  +   +   
Sbjct: 442 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 498

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  V       +   +DV  T L  ++  L      +    ++L   LF +  L     T
Sbjct: 499 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTPAKKT 557

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL   +  +P    + + R   S+     +N L++ + +DG++        
Sbjct: 558 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 615

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371
            + TGR S      QN+P      +                          +R   +   
Sbjct: 616 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 650

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           +   L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT   R 
Sbjct: 651 QDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRR 710

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y               L ++        N+  E++   +++ +   +   
Sbjct: 711 HAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAR 765

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           E    +  +     R+      K+  +        +    +   G A    K        
Sbjct: 766 EKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI------- 813

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                                        +     +L R                    L
Sbjct: 814 ----------------------------AMIKMQSELERRK------------------L 827

Query: 611 AEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              M+                 ++ + P  +      L   +M         +PL A+  
Sbjct: 828 KTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADAN 874

Query: 669 ESKRY 673
               +
Sbjct: 875 WGHNW 879


>gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
 gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946]
          Length = 682

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 104/690 (15%), Positives = 193/690 (27%), Gaps = 183/690 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D ET         G+  + +   ++  +    +    L D    P   + L+   E
Sbjct: 149 VLGLDLETT--------GLDPHQDRPRLLSLS---TERDTYLVDLFALPHALEALRPLFE 197

Query: 63  NTDVTI-VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
                + V HN  F+   L     L     R  CT +  +     S + A+         
Sbjct: 198 AKTGPVLVGHNLKFDLAFLLKA-GLWPEGRRLWCTGLAHQVIHARSRMPALA-------- 248

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----- 176
                 +L+              +              Y   D  V   ++ + +     
Sbjct: 249 ------DLV-------PGLDKRLQTSDWSGPISEAQLAYAARDTQVLLPLYHQQQEESRR 295

Query: 177 ----PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                +   E         +   G   +        +  ++   +  + L+  T     +
Sbjct: 296 LGIGKVLEIESRALPAVAWMGLMGVPFNPERWLATAKEAELSAQEALKRLDWRT-----N 350

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
               +++   L    G+ L      T +  LS +++  P    +   R    +       
Sbjct: 351 WDSPKQVLEAL-RRAGIEL----SDTREETLSRHRE-HPTVAALLAYR-EHRKRQSTYGA 403

Query: 293 TLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             +E ++   GR+  + Q +GA   GR S      Q +PR                    
Sbjct: 404 AWLENLHPLTGRIHPSWQQIGAES-GRMSCSRPNLQQVPREPAY---------------- 446

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                        R+C  A  G+ L+ AD + IE R+ A +AGE+  L+AFE GEDL+  
Sbjct: 447 -------------RACFQAPGGRVLIKADYSQIELRLAAQIAGEKRMLEAFEQGEDLHTL 493

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           T       A  + +++ R + K +   L Y  G++  +  A                   
Sbjct: 494 TARLVTGKA--EPSREDRQLAKALNFGLLYGMGSEGLRTYARAN---------------- 535

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                                           E +++A+ + +  +              
Sbjct: 536 ----------------------YGLELSPQEAEALREAFFRAYPGLRAWHR--------- 564

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                                + +  + +   +GR                 T +     
Sbjct: 565 --------------------HQPEGEVEVRTLAGRRR----------VTGRYTEK----- 589

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-S 645
                     VQ    D L   +    ++     G   VL VHDEIV E P      A +
Sbjct: 590 ------LNTPVQGSGADGLKLTLALLYESRQKAPGCFPVLAVHDEIVIEAPADGVSAAYA 643

Query: 646 MLYHLMTSNPSWAK-GLPLKAEGYESKRYR 674
            L   M          +P+  E    + + 
Sbjct: 644 WLTRSMREGMEAILTKVPVLVEVGVCEDWG 673


>gi|325912689|ref|ZP_08175072.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
 gi|325478110|gb|EGC81239.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B]
          Length = 883

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 85/665 (12%), Positives = 187/665 (28%), Gaps = 141/665 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
                F+       + + D   D  + Q   LK+ LE+ ++     +       L+    
Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           + +  +     ++ +      +        L + +   +E           E       +
Sbjct: 392 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 441

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195
               H         +    V V  ++  ++ P   + +           +  +   +   
Sbjct: 442 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 498

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  V       +   +DV  T L  ++  L      +    ++L   LF +  L     T
Sbjct: 499 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFDKLKLTPAKKT 557

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL   +  +P    + + R   S+     +N L++ + +DG++        
Sbjct: 558 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 615

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371
            + TGR S      QN+P      +                          +R   +   
Sbjct: 616 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 650

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           +   L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT   R 
Sbjct: 651 QDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRR 710

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y               L ++        N+  E++   +++ +   +   
Sbjct: 711 HAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAR 765

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           E    +  +     R+      K+  +        +    +   G A    K        
Sbjct: 766 EKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI------- 813

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                                        +     +L R                    L
Sbjct: 814 ----------------------------AMIKMQSELERRK------------------L 827

Query: 611 AEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
              M+                 ++ + P  +      L   +M         +PL A+  
Sbjct: 828 KTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADAN 874

Query: 669 ESKRY 673
               +
Sbjct: 875 WGHNW 879


>gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 587

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 99/694 (14%), Positives = 206/694 (29%), Gaps = 152/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--HDPVMPQVLKEA 60
            L++D E      + K        +  + L   G D+    + D +  +  V+   ++  
Sbjct: 24  YLYLDTE-----VMIKDFENIDFFNDKIRLIQIG-DEENTFVIDLLKINPEVVKNHIQNL 77

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEA 115
           +EN  +  + HN  F+   LK   NL+I       T++ ++           +L A  + 
Sbjct: 78  IENKGI--IGHNLKFDLKFLK--TNLNILPKIVFDTMIASQILAKGDSNQRHSLSASAKR 133

Query: 116 L-KLSSQKMEE-----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
              L   K  +      K+L +   +    +    R+     +         K     T 
Sbjct: 134 FVSLDVDKTYQKSPWWAKDLSSEQIEYAAKDIDTLRHLFKEEKNQLNQDNLHKKASGETF 193

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           ++F  + P+++ E         I   G  +D   A  L +  + E      + +  T   
Sbjct: 194 KVFGVINPVAALEMAFLPALVEIELSGIPIDEEEAKKLLKQKESEFQSDYMKFKIKTGAD 253

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETT--CQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
                  +++  +L  +  + L    + +   Q V   + +   +   +   R   +   
Sbjct: 254 PF---SPQQVVNYLTNKLKIKLPKTEKGSFSSQDVFLKDYEDIEEVRLLLKLR---ADKK 307

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           ++     +     + R+ G  + +GA+ TGR S      QN+P+  +             
Sbjct: 308 IIDKIKEILQFTRNERVYGEFKQIGAA-TGRMSSLRPNLQNIPKNLKY------------ 354

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                                   EG K +VAD + IE R+ A    ++  + AF  G+D
Sbjct: 355 -------------------LFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNEGKD 395

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+  T +     +  ++TK++R + K +   L Y    K+  + A               
Sbjct: 396 LHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSPKSLVEYAKAN------------ 443

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                               ++  + + + +    +  +++ + 
Sbjct: 444 --------------------------YGVSISLQEAKKFHENYFKFYKSFKDWHDKVKEH 477

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            ++        +                         GR L                   
Sbjct: 478 LDKHRSIELETLL------------------------GRKL------------------- 494

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFN 643
                         +Q    D+L   ++            +V  VHDEI+ E    D   
Sbjct: 495 --IAYKFTDAVNYPIQGSGSDLLKMAVVFFFKERNDLDAKVVNLVHDEILVEVAAKDIEK 552

Query: 644 ASMLY-HLMTSNPSWAK-GLPLKAEGYESKRYRK 675
           A  +    M          +P+  E   S  + K
Sbjct: 553 AKEVLSSSMEKAGKLILKDVPVAFEMVVSDSWNK 586


>gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 911

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 95/673 (14%), Positives = 193/673 (28%), Gaps = 134/673 (19%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-------- 58
           D+E  S   L    + +      +I      +       D  +        +        
Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTD 377

Query: 59  ----EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
               E L N+++    ++      +LK      +  +     +V   S      +  +  
Sbjct: 378 SLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANV-ISDLSN 436

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +KL    M E + +   F KG       D +  +   + + +      D  + +     
Sbjct: 437 QIKL-VDNMIELETIDEIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTN 495

Query: 175 LEP-LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV--- 230
                   +  L  +   I  +G  +D        Q +  +   ++ +++ L    +   
Sbjct: 496 TYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEIDNN 555

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++++  LF +  L   +   TT + VL       P    +  +R + ++  +  
Sbjct: 556 FNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITFHPIINLLLEHR-KYTKLYITY 613

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L    + +  D ++         + TGR S      QN+       +E            
Sbjct: 614 LKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNISIRDNEQKE------------ 660

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        VR   I +  K  +  D + IE RVLA M+ E   +KAF    D+++
Sbjct: 661 -------------VRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQDADIHL 707

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
                 FN++  Q+T +QR I KV                     GL     A+ +  N 
Sbjct: 708 QAAKLIFNLSDDQITSEQRRIAKVFN--------------FGILYGLTDFGLANDLNMN- 752

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                            +++ K +      + +      +  E 
Sbjct: 753 -----------------------------VNQAKQMIKDYYSAFPSLLDFK---EKQVEI 780

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
               G                            S R     ++ +    +    +++   
Sbjct: 781 ATNQGYITTL-----------------------SNRRRYIDELNSTNHNIRQFGKRI--- 814

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DIL   M++  K          IV  +HDEI+ E  D      
Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVNDNQLEQT 868

Query: 645 SML-YHLMTSNPS 656
             +    + +   
Sbjct: 869 KKIVVSELENALE 881


>gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
 gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I
 gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5]
          Length = 574

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 110/694 (15%), Positives = 205/694 (29%), Gaps = 165/694 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L++D ET                   + L   G D+    + D      + + L++ + 
Sbjct: 24  YLYLDTETTGD---------------RIRLVQIG-DEENTYVIDLYEIQDI-EPLRKLIN 66

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKA-VGEALKLSS 120
              +  V HN  F+   L       I       T++ +   G    +L   V   L  S 
Sbjct: 67  ERGI--VGHNLKFDLKYLYRY---GIFPSATFDTMIASYLLGYERHSLNHIVSNLLGYSM 121

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV--------TREIF 172
            K  +  +  A        +   +          ++     + D           T +IF
Sbjct: 122 DKSYQTSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELDAERGEELLKTRTAKIF 181

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               P++  E         +   G+ VDV       + V+ E  K  QE           
Sbjct: 182 DLKSPVAIVEMAFVREVAKLEINGFPVDVEELTNKLKAVERETQKRIQEFYIKYRVD--- 238

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
               ++L + L  +  L+L    +   +T  + L+S + + P   ++     +  + A  
Sbjct: 239 PLSPKQLASLLTKKFKLNLPKTPKGNVSTDDKALTSYQDVEPV--KLVLEIRKLKKIA-D 295

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           KL  L E +  +GR+    + +GA  TGR S      QN+ R                  
Sbjct: 296 KLKELKEHL-KNGRVYPEFKQIGA-VTGRMSSAHPNIQNIHRD----------------- 336

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R    A EG   V++D + IE R+ A    +   L AF+ G+D++
Sbjct: 337 --------------MRGIFKAEEGNTFVISDFSQIELRIAAEYVKDPLMLDAFKKGKDMH 382

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T +        ++TK++R + K +   L Y   AK   + A                 
Sbjct: 383 RYTASVVLGKKEEEITKEERQLAKAINFGLIYGISAKGLAEYAK---------------- 426

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                             + +++ + +      E  + + +  +
Sbjct: 427 ----------------------LGYGVEISLEEAQVLRERFFKNFKAFKEWHDRVKKELK 464

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +                        K  +      GR        +              
Sbjct: 465 E------------------------KGEVKGHTLLGRRFSANTFND-------------- 486

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMM----NATKAG--YDIVLTVHDEIVCETPDTDEFN 643
                       +Q    D+L   ++    N  K G    +V  VHDEIV E        
Sbjct: 487 -------AVNYPIQGTGADLLKLAVLLFDANLQKKGIDAKLVNLVHDEIVVECEKEKAEE 539

Query: 644 ASMLYHL-MTSNPSWAK-GLPLKAEGYESKRYRK 675
              +    M +        +P++ E   ++R+ K
Sbjct: 540 VKEILEKSMKTAGKIILKEVPVEVESVINERWTK 573


>gi|312871738|ref|ZP_07731826.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
 gi|311092680|gb|EFQ51036.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a]
          Length = 883

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 87/669 (13%), Positives = 188/669 (28%), Gaps = 149/669 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
                F+       + + D   D  + Q   LK+ LE+ ++     +        +    
Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLKKILEDKNIAKQVFDLK------RNYVG 386

Query: 86  L---DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           L   DI +       ++ +      +        + + +   +E     +     E    
Sbjct: 387 LQRLDITLSNVTDDIMLASYIADSENN----ARDIGVLANSYQE-----SYVQSDEIIYG 437

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQT 191
              +    H         +    V V  ++  ++ P   + +           +  +   
Sbjct: 438 KGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQVHLYKNIEIPIAVILAK 494

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  V       +   +DV  T L  ++  L      +    ++L   LF +  L  
Sbjct: 495 MEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTP 553

Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              T+   +T   VL   K  +P    + + R   S+     +N L++ + +DG++    
Sbjct: 554 AKKTKTGYSTSVDVLEKLKYQSPIVDDILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRF 612

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P      +                          +R   
Sbjct: 613 LQ-TLTATGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAF 646

Query: 369 IA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426
           +   +   L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT 
Sbjct: 647 VPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTP 706

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             R   K +   + Y               L ++        N+  E++   +++ +   
Sbjct: 707 LMRRHAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAV 761

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +   E    +  +     R+      K+  +        +    +   G A    K    
Sbjct: 762 KLAREKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI--- 813

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                                            +     +L R                 
Sbjct: 814 --------------------------------AMIKMQSELERRK--------------- 826

Query: 607 RDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
              L   M+                 ++ + P  +      L   +M         +PL 
Sbjct: 827 ---LKTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLI 870

Query: 665 AEGYESKRY 673
           A+      +
Sbjct: 871 ADANWGHNW 879


>gi|325912106|ref|ZP_08174504.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
 gi|325476056|gb|EGC79224.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D]
          Length = 883

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 86/669 (12%), Positives = 189/669 (28%), Gaps = 149/669 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
                F+       + + D   D  + Q   LK+ LE+ ++     +        +    
Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLKKILEDKNIAKQVFDLK------RNYVG 386

Query: 86  L---DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           L   DI +       ++ +      +        + + +   +E     +     E    
Sbjct: 387 LQRLDITLSNVTDDIMLASYIADSENN----ARDIGVLANSYQE-----SYVQSDEIIYG 437

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQT 191
              +    H         +    V V  ++  ++ P   + +           +  +   
Sbjct: 438 KGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQVHLYKNIEIPIAVILAK 494

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  V       +   +DV  T L  ++  L      +    ++L   LF +  L  
Sbjct: 495 MEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTP 553

Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              T+   +T   VL   +  +P    + + R   S+     +N L++ + +DG++    
Sbjct: 554 AKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRF 612

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P      +                          +R   
Sbjct: 613 LQ-TLTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAF 646

Query: 369 IA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426
           +   +   L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT 
Sbjct: 647 VPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTP 706

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             R   K +   + Y               L ++        N+  E++   +++ +   
Sbjct: 707 LMRRHAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAV 761

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +   E    +  +     R+      K+  +        +    +   G A    K    
Sbjct: 762 KLAREKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI--- 813

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                                            +     +L R                 
Sbjct: 814 --------------------------------AMIKMQSELERRK--------------- 826

Query: 607 RDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
              L   M+                 ++ + P  +     +L   +M         +PL 
Sbjct: 827 ---LKTKMILQIHDE-----------LLFDVPSEELDLIKILVPKIMQQAAQ--LDVPLI 870

Query: 665 AEGYESKRY 673
           A+      +
Sbjct: 871 ADANWGHNW 879


>gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
 gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183]
          Length = 906

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 187/656 (28%), Gaps = 119/656 (18%)

Query: 28  VCVILFAFGFDDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
             V   A                     + L E L +       H++     +L      
Sbjct: 357 GEVDALAVATASGAAVYVEPAELGEADERALAEWLADPHRPKAIHDAK--GPMLALAARG 414

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDR 145
                    T + A           +G   L+   +++ E  E   +       +    R
Sbjct: 415 MTLAGVTSDTALAAYLALPGQRTFDLGDLVLRYLHKELREHAEPGGQLTIDGIADDDAAR 474

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
                  A     E    D  + R        L   E  L  +   +   G  VDV    
Sbjct: 475 ELAVRARAVLELAE--ALDRDLERR--GAARLLHEVELPLTGVLAAMERAGIAVDVDHFI 530

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRV 262
            L+  +  +    +Q+  +       +    ++++  LF E GL     T+T   T    
Sbjct: 531 QLSASLGGQAKDTEQQAHAAVGH-EFNLGSPKQVQQVLFEELGLPKTKRTKTGYTTDSEA 589

Query: 263 LSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
           L+S   K   P    +       ++   + +++L+     DGR+  T   + A+ TGR S
Sbjct: 590 LNSLRAKSDHPVLEHILR-WREVAKLKSI-VDSLIPMAAEDGRIHTTFNQMVAA-TGRLS 646

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVA 379
                 QN+P  +                              +R   +  EG + L+ A
Sbjct: 647 STDPNLQNIPIRTAEGR-------------------------QIREGFVVGEGYECLLTA 681

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R++A ++G++  ++AF +G D +  T +R F + P Q+  + RA  K M   L
Sbjct: 682 DYSQIELRIMAHLSGDEALIEAFTSGADFHTITASRVFGLPPEQIDGELRARIKAMNYGL 741

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y             + L +      V      +++    ++ + +     +    +   
Sbjct: 742 AYGLSP-----FGLASQLGITPDEARVLMEEYFQQFGGVRDYLQGVVRRARQDGYTETI- 795

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                                                     +RR +P +     +    
Sbjct: 796 ----------------------------------------LGRRRYLPDLTSDNRQRR-- 813

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
             +    +L     G+    +   + ++ R     G  +  ++Q                
Sbjct: 814 -EMAERMALNAPIQGSAADIIKVASLRVDRALRERGLASRMLLQ-------------VHD 859

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
                       +V E    +      L    MT         PL+      + ++
Sbjct: 860 E-----------LVFEVAPGELEELKELVREQMTGAYE--LRAPLEVAMGTGRTWQ 902


>gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 880

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 99/654 (15%), Positives = 183/654 (27%), Gaps = 133/654 (20%)

Query: 37  FDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
             ++     +        + VL   L++ +   V H        L     L +       
Sbjct: 338 VRNNGAAYIELAGLDAAAESVLARWLQDPEEAKVLHEFKSALKALHNR-GLGLE-GVVDD 395

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           T +             + E        + +    I+                    +   
Sbjct: 396 TSISGYLIQPDRRSYDLAE--------LAQVHLKISLAA---AAAQSGQLELDLSGDTDE 444

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAH 205
           +          V   + K  E   ++ +           +  +   +   G  V      
Sbjct: 445 VAATALVQHAAVVHALSKHFEKELAEIKADALLTTLELPVARVLAQMELTGIFVSTDRMD 504

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRV 262
                +        ++  +     V +    ++L+T LF E GL      ++   T    
Sbjct: 505 EQLADLTKVIENAQEQAFAAIGHEV-NLGSPKQLQTVLFDELGLPKTKKIKSGYTTDAAS 563

Query: 263 LSSN-KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           L    +K   + +        +S+ A   + TL +++  D R+  T     A+ TGR S 
Sbjct: 564 LKGLLEKTGHEFLVQLMAHRESSKLA-QMVETLKKSVADDARIHTTYAQNIAA-TGRISS 621

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVAD 380
                QN+P  S                              VRS  + SEG + L+ AD
Sbjct: 622 NNPNLQNIPVRSEEGRR-------------------------VRSIFMVSEGYECLLSAD 656

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R++A ++G+Q  ++A++ GEDL+    AR FNV PA+VT   R+  K M   L 
Sbjct: 657 YSQIEMRIMAHLSGDQALIQAYKDGEDLHRFVGARIFNVEPAEVTSAMRSKVKAMSYGLA 716

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L ++            + +     +   +++             
Sbjct: 717 YG-----LTSFGLSKQLEISVDEARTLMKDYYDRFGAVRAYLDGVRDQARVDGYT----- 766

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                                               A I  +RR +P +     +     
Sbjct: 767 ------------------------------------ATIEGRRRYLPDLTSTNRQA---- 786

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                       +  N     +    + R     G   E   Q +               
Sbjct: 787 ------REAAERIALNSPIQGSAADIIKRAML--GVSAELASQGL--------------- 823

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              ++L VHDE+V E    +      L    M S       +PL  +      +
Sbjct: 824 KSRMLLQVHDELVLEVAPGEREAVEKLVIEQMGSAAE--LSVPLDVQIGVGSSW 875


>gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
 gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750]
          Length = 724

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 92/744 (12%), Positives = 200/744 (26%), Gaps = 187/744 (25%)

Query: 9   ETR------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------------- 49
           ET         +D+   G+  Y  +  ++       D P       H             
Sbjct: 76  ETYLTGVSEYVLDVETTGLDVY--NDILVGICLYNPDLPSFYVPFNHTDLQNKRVEGQMT 133

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
           +     V+   L N  +  + HN  F+  V+   +   I  + W  T +           
Sbjct: 134 EEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRIA-NVWWDTNIAGWVLNEN--- 189

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
               E   L     +     I      +          P +     +F  Y   D   T 
Sbjct: 190 ----EKHGLKPMYNKY----ILNGEGSDEDFGDLFEGIPCNYIPIDIFAIYGANDGFKTW 241

Query: 170 EIFKRLEPLSSKEQEL-----------------WYLDQTINDRGYCVDVALAHTLNQIVD 212
            +++  +    ++                      +   +  RG  +    A  L+   +
Sbjct: 242 ALYQFQKKYLREDHPRADYRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFN 301

Query: 213 VERTKLDQELESL------------------TYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            E  + ++  +                          +    +++    +    L     
Sbjct: 302 AEMAEKEKLCDEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSR 361

Query: 255 TET--TCQRVLSSNKKL---------TPQAIQVFNN--RMRASRSAVLKLNTLVEA-MNS 300
            E   T  +++  ++                 + N              ++ + E     
Sbjct: 362 KEPRGTGDKIVQQHRNKAKKAGTKKGEEFIQFLDNYQRYKECGNLLGTYIDKIPEVKCAK 421

Query: 301 DGRLRGTLQFLGASRTGRWSGCV----FPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
              +  T    GA +TGR+S          QN+P   +S                     
Sbjct: 422 TNAVHTTYNQYGA-KTGRFSSSDTVTKINLQNIPSHEKS--------------------- 459

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R    A +G K V  D + IE RVL++++G++   +A+  G+DLY    ++ 
Sbjct: 460 -------IRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKV 512

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           + V                             ++      +N                  
Sbjct: 513 YGVPYEDC------------------------REFYPDGTVNAEGKHRRTTM-------- 540

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            +       +        +        +++   + +   ++ +L  ++ +  E+      
Sbjct: 541 KSVLLGIMYERGAKAIGEQFDRSAEWAQKLIDDFYKSFPKIQQLRLKVEKMAEEY--GYV 598

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
             I  ++R +P            + LP      Y++                       +
Sbjct: 599 TTIQGRKRRLPE-----------MQLPDHDDYRYQEAH--------------------RQ 627

Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFN-ASMLYH 649
               ++Q  S DI+   M+              +V+TVHDE++ E P+      A +L +
Sbjct: 628 SLNAVIQGSSADIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPEDHIKEGADLLVN 687

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
            M         LP+  +   +  +
Sbjct: 688 TMKRVGHSLIDLPMSVDAEVNDYW 711


>gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
 gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50]
          Length = 911

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 94/664 (14%), Positives = 191/664 (28%), Gaps = 133/664 (20%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------PVMP 54
           D+E  S   L    + +      +I      +       D  +                 
Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKVQQLSFFEDTTLSSTD 377

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            + +E L N ++    ++      +LK      +P +     +V   S         +  
Sbjct: 378 NLFEEFLNNKNLKKYTYDIKKTTYLLKNHQYNVLPSNFDFDFMVACYSLNANVV-SDLSN 436

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +KL +Q  EE +     F KG       D +  +   + + +      D  + +     
Sbjct: 437 QIKLVNQ-QEEIETNEIIFGKGVKKNPDIDIDIKSKYISKKAYLLKKYSDKLIEQLKQTN 495

Query: 175 LEP-LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV--- 230
                   +  L  +   I  +G  +D        + +  +   ++ +++ +    +   
Sbjct: 496 TYDLYLKIDYPLIEVLYDIEVQGILIDKEQLKLQTEQILKKINHIEWQMKIMVAEEIDNN 555

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++++  LF +  L   +   TT + VL       P    +  +R + ++     
Sbjct: 556 FNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITFHPIINLLLEHR-KYTKLYTTY 613

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L    + +  D ++         + TGR S      QN+       +E            
Sbjct: 614 LKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNISIRDNEQKE------------ 660

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        VR   I +  K  +  D + IE RVLA M+ E   +KAF    D+++
Sbjct: 661 -------------VRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQNADIHL 707

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
                 FN++  Q+T +QR I KV                     GL     A+ +  N 
Sbjct: 708 QAAKLIFNISDNQITSEQRRIAKVFN--------------FGILYGLTDFGLANDLNMN- 752

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                            +++ K +      + +      +  E 
Sbjct: 753 -----------------------------VNQAKQMIKDYYSAFPSLLDFK---EKQVEI 780

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
               G                            S R     ++ +    +    +++   
Sbjct: 781 ATNQGYITTL-----------------------SNRRRYISELNSTNHNIRQFGKRI--- 814

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q  + DIL   M++  K          IV  +HDEI+ E  +      
Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKIKEQNLDAKIVCQIHDEIILEVDNNQLEQT 868

Query: 645 SMLY 648
             + 
Sbjct: 869 KKIV 872


>gi|90101283|sp|Q7TQ07|DPOLN_MOUSE RecName: Full=DNA polymerase nu
          Length = 864

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 94/649 (14%), Positives = 187/649 (28%), Gaps = 151/649 (23%)

Query: 67  TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117
            +V  N+  F RTVL   +  D               V A          + + +    K
Sbjct: 314 PVVCFNAKDFVRTVL-QLYGEDGSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDL--VAK 370

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              + +           K  +      RN  +      L   Y      +T ++  +L+ 
Sbjct: 371 HLEKSIT---------VKPSSTFREASRNTLSQNVFMNLKILY-----DLTMDLCSKLKA 416

Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
               +        L  +   + +    VD       + ++     +L+QE   +      
Sbjct: 417 YGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAG-EQF 475

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +L+  LF +  LHL    +           +T + +L+S + L P    +   R
Sbjct: 476 LIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYR 535

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L+  M   G +  T    G + TGR S      Q + +      +  
Sbjct: 536 Q-VHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPW 592

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                   ++T  P          R+  ++SEG   + AD + IE R+LA ++G+   LK
Sbjct: 593 NFKGKEEETVTISP----------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLK 642

Query: 401 AFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            F+    +D++ T  ++  ++   +VT   R   K +  ++ Y                 
Sbjct: 643 LFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYG---------------- 686

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A              + + QK+ ++ 
Sbjct: 687 ----------------------------AGKERLAACLGVTVLEATHFLERFLQKYKKIK 718

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +    +                                   +    GR      +     
Sbjct: 719 DFAQTVIGQCHSA--------------------------GYVTSILGRRRPLPRICAQDQ 752

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDE 631
                  Q  R+          +VQ  + D+    M+  + A          +V  +HDE
Sbjct: 753 ---QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDE 803

Query: 632 IVCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674
           ++ E  DT     A+++  +M              +PLK      + + 
Sbjct: 804 LLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSWG 852


>gi|46309579|ref|NP_862905.1| DNA polymerase nu [Mus musculus]
 gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus]
          Length = 866

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 94/649 (14%), Positives = 187/649 (28%), Gaps = 151/649 (23%)

Query: 67  TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117
            +V  N+  F RTVL   +  D               V A          + + +    K
Sbjct: 316 PVVCFNAKDFVRTVL-QLYGEDGSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDL--VAK 372

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              + +           K  +      RN  +      L   Y      +T ++  +L+ 
Sbjct: 373 HLEKSIT---------VKPSSTFREASRNTLSQNVFMNLKILY-----DLTMDLCSKLKA 418

Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
               +        L  +   + +    VD       + ++     +L+QE   +      
Sbjct: 419 YGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAG-EQF 477

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +L+  LF +  LHL    +           +T + +L+S + L P    +   R
Sbjct: 478 LIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYR 537

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L+  M   G +  T    G + TGR S      Q + +      +  
Sbjct: 538 Q-VHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPW 594

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                   ++T  P          R+  ++SEG   + AD + IE R+LA ++G+   LK
Sbjct: 595 NFKGKEEETVTISP----------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLK 644

Query: 401 AFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            F+    +D++ T  ++  ++   +VT   R   K +  ++ Y                 
Sbjct: 645 LFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYG---------------- 688

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                             A              + + QK+ ++ 
Sbjct: 689 ----------------------------AGKERLAACLGVTVLEATHFLERFLQKYKKIK 720

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +    +                                   +    GR      +     
Sbjct: 721 DFAQTVIGQCHSA--------------------------GYVTSILGRRRPLPRICAQDQ 754

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDE 631
                  Q  R+          +VQ  + D+    M+  + A          +V  +HDE
Sbjct: 755 ---QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDE 805

Query: 632 IVCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674
           ++ E  DT     A+++  +M              +PLK      + + 
Sbjct: 806 LLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSWG 854


>gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
 gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017]
          Length = 901

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 101/656 (15%), Positives = 196/656 (29%), Gaps = 129/656 (19%)

Query: 33  FAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
            A    +      D         + L E L + ++  V H+       L       +   
Sbjct: 355 VALAAPNGEGAYLDVTTLTEDDERALGEWLADENIHKVGHSLKKALHGL-RSRGWRLA-G 412

Query: 92  RWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
             + T + A           L  +             GKEL +   +G+    L D +  
Sbjct: 413 LVMDTELAAYLVRPGQRSFKLDDLVLRY--------LGKELRSEGVEGDGQLSLLDTDSD 464

Query: 149 NHREAWRLFGEYCKGDVTVTR--EIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALA 204
           N      L       +++     E+            E  L  +   +   G  VD+ + 
Sbjct: 465 NEIVRRELVRARAVLELSSALSAELAAIGATTLLADIELPLLSMITDLEAAGIAVDIDVL 524

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261
             L         +  ++  S+    + +    ++L+  LF E G+     T+T   T   
Sbjct: 525 TELEAHYANRVKQATEQAYSVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDAD 583

Query: 262 VLSSNKK--LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            L +  +    P    +  +R  A++     +  L++A+  DGR+  TL     + TGR 
Sbjct: 584 ALQTLYEKTEHPFLQYLLEHR-DATKLRST-VEGLIKAVADDGRIHTTLHQ-TITATGRL 640

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVV 378
           S      QN+P  +                              +R   +  EG  +L+ 
Sbjct: 641 SSVDPNLQNIPVRTDEGRR-------------------------IREAFVVGEGYAELMT 675

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ ++  ++AF +G D +  T AR F+V P +VT +QRA  K M   
Sbjct: 676 ADYSQIEMRIMAHLSNDEALIEAFHSGFDFHAATAARVFDVDPTEVTGEQRAKIKAMNYG 735

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y            +  L ++T       +     +    ++   + E   +    +  
Sbjct: 736 LAYG-----LSAYGLSQQLRISTEEARALMDEYFLRFGGVRDYLHSVVERAAKEGYTETI 790

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
            G          R+    ++    +  +  E+   N              +         
Sbjct: 791 FGR---------RRYLPDLTSTNRQRREMAERMALN------------APIQGSAADIIK 829

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
           + ML   R+L    + +                                      ++   
Sbjct: 830 VAMLGVHRALAEAGLRSRV------------------------------------LLQVH 853

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                        ++ E  D +      L    M S       +PL+      + +
Sbjct: 854 DE-----------LMLEVADGEHAQVEELVRREMGSAYE--LSVPLEVSVGYGRSW 896


>gi|329920128|ref|ZP_08276959.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
 gi|328936582|gb|EGG33026.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G]
          Length = 883

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 86/669 (12%), Positives = 186/669 (27%), Gaps = 149/669 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
                F+       + + D   D  + Q   L + LE+ ++     +        +    
Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLNKILEDKNIAKQVFDLK------RNYVG 386

Query: 86  L---DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           L   DI +       ++ +      +        L + +   +E           E    
Sbjct: 387 LQRLDITLSNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYG 437

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQT 191
              +    H         +    V V  ++  ++ P   + +           +  +   
Sbjct: 438 KGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAK 494

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  V       +   +DV  T L  ++  L      +    ++L   LF +  L  
Sbjct: 495 MEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTP 553

Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              T+   +T   VL   +  +P    + + R   S+     +N L++ + +DG++    
Sbjct: 554 AKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRF 612

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P      +                          +R   
Sbjct: 613 LQ-TLTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAF 646

Query: 369 IA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426
           +   +   L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT 
Sbjct: 647 VPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTP 706

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             R   K +   + Y               L ++        N+  E++   +++ +   
Sbjct: 707 LMRRHAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAV 761

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +   E    +  +     R+      K+  +        +    +   G A    K    
Sbjct: 762 KLAREKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI--- 813

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                                            +     +L R                 
Sbjct: 814 --------------------------------AMIKMQSELERRK--------------- 826

Query: 607 RDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
              L   M+                 ++ + P  +      L   +M         +PL 
Sbjct: 827 ---LKTKMILQIHDE-----------LLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLI 870

Query: 665 AEGYESKRY 673
           A+      +
Sbjct: 871 ADANWGHNW 879


>gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
 gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21]
          Length = 811

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 86/628 (13%), Positives = 169/628 (26%), Gaps = 153/628 (24%)

Query: 8   FETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALE 62
            E  S  D       G   + ED    L    + +          +  + Q    K+AL 
Sbjct: 315 TEMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSNVSLLQEALFKKALS 368

Query: 63  NTDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGE 114
                       ++     VL   FN+D+P      T +           L S +  +  
Sbjct: 369 KP--IKT-----YDFKRSKVLLNRFNIDLP-EPAFDTRLAKYLLSTTEDNLVSTIARLYT 420

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L L +     GK       +                   +        +  + +++   
Sbjct: 421 NLPLDTDDAVYGKGAKRAIPEKTR----------FLEHLAKKVKVLVDSEANIMQQLKAN 470

Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            +       EQ L  +   +  RG  V     + +          L QE+  L      +
Sbjct: 471 EQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ-EFN 529

Query: 233 SRCLEKLKTWLFLETGLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
               ++L   LF   GL +     T+   +T   VL     ++P   ++   R   ++  
Sbjct: 530 INSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQ-ITKLQ 588

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L + +  DG++         ++TGR S      QN+P                 
Sbjct: 589 STYIIGLQDYILEDGKIHTRYVQD-LTQTGRLSSSDPNLQNIPVRLEQGR---------- 637

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                           +R   + SE    L+ +D + IE RVLA ++ ++  + AF+ G 
Sbjct: 638 ---------------LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGA 682

Query: 407 DLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           D++ +T  R F +  P  VT + R   K +                    G++    +  
Sbjct: 683 DIHTSTAMRVFGIEKPENVTPNDRRNAKAVNF--------------GIVYGISDFGLS-- 726

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                 ++    + +++  +      + 
Sbjct: 727 ----------------------------HNLGIPRKLAKQYIDTYFERYPGIKNYMETVV 758

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +  +                              +     R     D+ +    +     
Sbjct: 759 REAKD--------------------------KGYVETLFHRRRSLPDINSRNFNIRQF-- 790

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEG 613
              R            +Q  + DIL   
Sbjct: 791 -AERTAINSP------IQGSAADILKMQ 811


>gi|91091764|ref|XP_969311.1| PREDICTED: similar to DNA polymerase theta [Tribolium castaneum]
 gi|270001085|gb|EEZ97532.1| hypothetical protein TcasGA2_TC011380 [Tribolium castaneum]
          Length = 1588

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 87/660 (13%), Positives = 192/660 (29%), Gaps = 150/660 (22%)

Query: 17   TKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
               G+    +     +  FA  +        D         +++  +     TI+ +N  
Sbjct: 1054 RTIGLNHTIKSPEVPISGFALFWGHSTAYYLDVAKKRETIDLIRHIVNEQQKTIIMYNCK 1113

Query: 75   FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
             +   L     ++    R     V                       + +   +L+  +C
Sbjct: 1114 QQIKTLHKWHGVEFR-SRVHDPKVADWLLQPEG--------------QDKTLHQLVETYC 1158

Query: 135  KGETHECLYD---RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                 +   D   R+      +W +        + V       L  +   E  +  +   
Sbjct: 1159 PELPLDQGQDAKLRSIFECYLSWHVLKN-----IEVELSKSNLLT-VFDTEMSIMRILAN 1212

Query: 192  INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
            I   G   +V+    L  ++  E   ++++  ++      S     +L   L  +     
Sbjct: 1213 IELAGIGANVSTLSNLVDLLTRELKAIERQGHAIAGRH-FSFASSRQLAKILQSDNNSK- 1270

Query: 252  EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
            + L +              P A  +     + S +    L  L+  +  +GR+ G     
Sbjct: 1271 KSLQK-----------NDNPLASLILK-WRKISATIGKTLQPLIRLV-ENGRIFGCYVTH 1317

Query: 312  GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             A+  GR +      QN+ +                         +  +    R   + S
Sbjct: 1318 TAT--GRITMHEPNLQNVAK----------------------DFDIDGVEVSCRKAFVPS 1353

Query: 372  EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
            +G  +V AD   +E RVLA ++ ++          D++    A+  N++  +VT++ R  
Sbjct: 1354 QGHVMVSADFCQLELRVLAHLSRDEVLGGILRRKGDIFRAIAAKWNNISENEVTEELRQR 1413

Query: 432  GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
             K +   + Y  G+KA  +      LN +                               
Sbjct: 1414 AKQIIYGIIYGMGSKALAEQ-----LNTDEAQ---------------------------- 1440

Query: 492  HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
                         R  + +R  +  V +  +E+ +   +T                    
Sbjct: 1441 -----------ATRFMQTFRNAYPGVQKYISEIIETCRKT-------------------- 1469

Query: 552  KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                    +   +GR      + +    + +   Q  R+           +Q  + D++ 
Sbjct: 1470 ------GFVETLAGRRRFLAHINHKNGAVKS---QAERQA------VNTTIQGSAADLVK 1514

Query: 612  EGMMNAT-----KAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKA 665
              M+        +    +VL +HDE++ E P+    +   +L   M  +   +   P+K 
Sbjct: 1515 MAMVRLETVFLGEKEVKLVLHLHDELLYEVPEGSLGSFVRILKTEMEGSVKLSIPFPVKV 1574


>gi|312872962|ref|ZP_07733022.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
 gi|311091484|gb|EFQ49868.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1]
          Length = 883

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 86/669 (12%), Positives = 186/669 (27%), Gaps = 149/669 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
                F+       + + D   D  + Q   L + LE+ ++     +        +    
Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLNKILEDKNIAKQVFDLK------RNYVG 386

Query: 86  L---DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           L   DI +       ++ +      +        L + +   +E           E    
Sbjct: 387 LQRLDITLSNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYG 437

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQT 191
              +    H         +    V V  ++  ++ P   + +           +  +   
Sbjct: 438 KGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAK 494

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  V       +   +DV  T L  ++  L      +    ++L   LF +  L  
Sbjct: 495 MEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFDKLKLTP 553

Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              T+   +T   VL   +  +P    + + R   S+     +N L++ + +DG++    
Sbjct: 554 AKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRF 612

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P      +                          +R   
Sbjct: 613 LQ-TLTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAF 646

Query: 369 IA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426
           +   +   L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT 
Sbjct: 647 VPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTP 706

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             R   K +   + Y               L ++        N+  E++   +++ +   
Sbjct: 707 LMRRHAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAV 761

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +   E    +  +     R+      K+  +        +    +   G A    K    
Sbjct: 762 KLAREKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI--- 813

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                                            +     +L R                 
Sbjct: 814 --------------------------------AMIKMQSELERRK--------------- 826

Query: 607 RDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
              L   M+                 ++ + P  +      L   +M         +PL 
Sbjct: 827 ---LKTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLI 870

Query: 665 AEGYESKRY 673
           A+      +
Sbjct: 871 ADANWGHNW 879


>gi|261878884|ref|ZP_06005311.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334524|gb|EFA45310.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 661

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 100/339 (29%), Gaps = 46/339 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQ---VL 57
             L +D ET S   +          +  ++  +F   +          D     Q   + 
Sbjct: 348 KILSLDTETTSTSPM----------EAELVGLSFSVKEKEAFYVAIPKDREEALQYVNIF 397

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           K   E+ ++  V  N  ++  VL+    +DI   +   T++            +  + E 
Sbjct: 398 KPLYEDPEILKVGQNIKYDYVVLRNY-GVDIQ-GKMFDTMLAHYLIQPELRHNMDYMAET 455

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L     +    +ELI                K     +     EY   D  +T  +   L
Sbjct: 456 LLH--YQTMHIEELIG---------PKGKGQKNMRDLSPEEIYEYAAEDADITLRLKNVL 504

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           EP              E  L  +   +   G  +D    + + +       + ++    L
Sbjct: 505 EPQLKEVGAKSLFWDIEMPLVKVLADMELNGVLLDTESLNEIERTFTERMQQYERHAFEL 564

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET----TCQRVLSSNKKLTPQAIQVFNNR 280
                 +    +++   LF +  +      T+T    T + VL   K   P    + N R
Sbjct: 565 AG-EEFNISSPKQVGEILFGKMKIVDKPKKTKTGQFVTSEEVLLQLKDKAPIVEDILNYR 623

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
               +     +  L + +N       T      + TGR 
Sbjct: 624 -GMKKLLGTYVEALPKLINPRTGHIHTSFNQAVTATGRL 661


>gi|187954717|gb|AAI41102.1| DNA polymerase N [Mus musculus]
          Length = 866

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 94/648 (14%), Positives = 189/648 (29%), Gaps = 149/648 (22%)

Query: 67  TIVAHNSY-FERTVLKACFNLD----IPIHRWICTLVLARSNGLPS---ALKAVGEALKL 118
            +V  N+  F RTVL+     D    +     +   V A          + + +    K 
Sbjct: 316 PVVCFNAKDFVRTVLQLYGEDDSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDL--VAKH 373

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             + +           K  +      RN  +      L   Y      +T ++  +L+  
Sbjct: 374 LEKSIT---------VKPSSTFREASRNTLSQNVCMNLKILY-----DLTMDLCSKLKAY 419

Query: 179 SSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
              +        L  +   + +    VD       + ++     +L+QE   +       
Sbjct: 420 GLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAG-EQFL 478

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNRM 281
                +L+  LF +  LHL    +           +T + +L+S + L P    +   R 
Sbjct: 479 IMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQ 538

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     ++ L+  M   G +  T    G + TGR S      Q + +      +   
Sbjct: 539 -VHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPWN 595

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                  ++T  P          R+  ++SEG   + AD + IE R+LA ++G+   LK 
Sbjct: 596 FKGKEEETVTISP----------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKL 645

Query: 402 FET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F+    +D++ T  ++  ++   +VT   R   K +  ++ Y                  
Sbjct: 646 FQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYG----------------- 688

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A              + + QK+ ++ +
Sbjct: 689 ---------------------------AGKERLAACLGVTVLEATHFLERFLQKYKKIKD 721

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               +                                   +    GR      +      
Sbjct: 722 FAQTVIGQCHSA--------------------------GYVTSILGRRRPLPRICAQDQ- 754

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEI 632
                 Q  R+          +VQ  + D+    M+  + A          +V  +HDE+
Sbjct: 755 --QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDEL 806

Query: 633 VCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674
           + E  DT     A+++  +M              +PLK      + + 
Sbjct: 807 LFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSWG 854


>gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 284

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 131/278 (47%), Gaps = 15/278 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVILFAFGFDDHPVELWDCVHDPVMP---- 54
           M  + ID ET S  D++KCG  KY  AED  +++ A+  D   +   D       P    
Sbjct: 1   MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            +  K AL +  V   A N+ FERT L   FN  +P   WICT+V +   GLP++L  VG
Sbjct: 61  YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120

Query: 114 EALKLSSQKMEEGKELIARF---CKGETHECLYDRNKPNHR-EAWRLFGEYCKGDVTVTR 169
           E L+L SQK + GK LI  F   CK         RN P H  E W+ F +YC  DV V  
Sbjct: 121 EVLRLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM 180

Query: 170 EIFKRLEPLSSKEQE--LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
            I  +++       E   W  DQ INDRG  +  +L    N +    + +L ++ + +T 
Sbjct: 181 AIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG 240

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
             + +     +L  WL  E GL + +L + T Q  L  
Sbjct: 241 --LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKE 276


>gi|315653652|ref|ZP_07906572.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
 gi|315489014|gb|EFU78656.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195]
          Length = 890

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 86/669 (12%), Positives = 186/669 (27%), Gaps = 149/669 (22%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
                F+       + + D   D  + Q   L + LE+ ++     +        +    
Sbjct: 344 AQYAGFSVKI-KQKIYVCD---DVTLLQEAPLNKILEDKNIAKQVFDLK------RNYVG 393

Query: 86  L---DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           L   DI +       ++ +      +        L + +   +E           E    
Sbjct: 394 LQRLDITLSNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYG 444

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQT 191
              +    H         +    V V  ++  ++ P   + +           +  +   
Sbjct: 445 KGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAK 501

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  V       +   +DV  T L  ++  L      +    ++L   LF +  L  
Sbjct: 502 MEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLAP 560

Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              T+   +T   VL   +  +P    + + R   S+     +N L++ + +DG++    
Sbjct: 561 AKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRF 619

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QN+P      +                          +R   
Sbjct: 620 LQ-TLTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAF 653

Query: 369 IA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTK 426
           +   +   L   D + +E RVLA ++ E+  L+AF+ G D++  T  + F ++   +VT 
Sbjct: 654 VPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTP 713

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             R   K +   + Y               L ++        N+  E++   +++ +   
Sbjct: 714 LMRRHAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAV 768

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           +   E    +  +     R+      K+  +        +    +   G A    K    
Sbjct: 769 KLAREKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQGSAADIIKI--- 820

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                                            +     +L R                 
Sbjct: 821 --------------------------------AMIKMQSELERRK--------------- 833

Query: 607 RDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLK 664
              L   M+                 ++ + P  +      L   +M         +PL 
Sbjct: 834 ---LKTKMILQIHDE-----------LLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLI 877

Query: 665 AEGYESKRY 673
           A+      +
Sbjct: 878 ADANWGHNW 886


>gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2]
 gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2]
          Length = 942

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/597 (15%), Positives = 165/597 (27%), Gaps = 123/597 (20%)

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           L+I + R   T + A       +    G      +                        R
Sbjct: 456 LEIDVSRTFDTTLAAYLLDSARSHFDDG--YIADTYLSVSLPPARGEAGAPTDAPVASAR 513

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
                R A                E+          E  L  +   +   G  VD     
Sbjct: 514 AAAVARAAREPLAR--------ALELRGAKNVFWDIETPLVPVLVAMERTGMLVDPGCLK 565

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE------TTC 259
            L++ ++ +  +L   + +L      +     +L   LF   GL  + L +      +T 
Sbjct: 566 DLSEGLESQIDELAVRIRALAGDSDFNISSPMQLSHILFDVMGLPTKGLKKTHRGYYSTN 625

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            RVL    +       +   R   ++     L+TL      DGR+  T      + TGR 
Sbjct: 626 ARVLDELAQDNELVRLILEYR-EKTKIKSTYLDTLGPLRRQDGRVHTTYNQ-TITATGRL 683

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QN+P  S                          +   V++   A EG   +  
Sbjct: 684 SSSNPNLQNIPTRSE-------------------------LGHTVKTAFSAGEGALFLAV 718

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           D + IE R+LA ++G++  ++AF  GED +  T AR F V   +VT   R+  K +   +
Sbjct: 719 DYSQIELRLLAHLSGDEHLIRAFREGEDFHAETAARVFGVPVDEVTPRLRSRAKAVNFGI 778

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y       Q    +  L++         +   E +     F         E    +   
Sbjct: 779 VYGQ-----QAFGLSQTLDIPVSEAQEMIDRYFEAYPGVRAFLDRTVAEAAERGYAETMF 833

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                                                     +RR +P + MK       
Sbjct: 834 -----------------------------------------GRRRPIPELRMKNATQRSF 852

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                            R+ +N                ++ E +      D+ A+ ++  
Sbjct: 853 ---------------GERTAMNHPMQGSAADIIKIAMRRVAERL---HGGDLHAKMILQV 894

Query: 618 TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                        E+  E P  +  +  +M+   M         +PL A+      +
Sbjct: 895 HD-----------ELDFECPIAEVADVSAMVREEMEGVVK--LKVPLIADVSTGVTW 938


>gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 586

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 99/694 (14%), Positives = 204/694 (29%), Gaps = 152/694 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV--HDPVMPQVLKEA 60
            L++D E      + K        +  + L   G D+    + D +  +  V+   ++  
Sbjct: 23  YLYLDTE-----VMIKDFENIDFFNDKIRLIQIG-DEENTFVIDLLKINPEVVKNHIQNL 76

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-----SALKAVGEA 115
           +EN  +  + HN  F+   LK   NL+I       T++ ++           +L A  + 
Sbjct: 77  IENKGI--IGHNLKFDLKFLK--TNLNILPKIVFDTMIASQILAKGDNSQRHSLSASAKR 132

Query: 116 L-KLSSQKMEE-----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
              L   K  +      K+L     +    +    R+     +         K     T 
Sbjct: 133 FVSLDVDKTYQKSPWWAKDLSPEQIEYAAKDIDALRHLFKEEKNQLNQDNLHKKASGETF 192

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           ++F  + P+++ E         I   G  +D   A  L +  ++E      + +  T   
Sbjct: 193 KVFGVINPVAALEMAFLPALVEIELSGIPIDEEEAKKLLKQKELEFQADYMKFKIKTGAD 252

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETT--CQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
                   ++  +L  +  + L    + +   Q V   + +   +   +   R   +   
Sbjct: 253 PF---SPLQVVNYLTNKLKIKLPKTEKGSFSSQDVFLKDYEDIEEVRLLLKLR---ADKK 306

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           ++     +     + R+ G  + +GA+ TGR S      QN+P+  +             
Sbjct: 307 IIDKIKEILQFTRNKRVYGEFKQIGAA-TGRMSSLRPNLQNIPKNLKY------------ 353

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                                   EG K +VAD + IE R+ A    ++  + AF  G+D
Sbjct: 354 -------------------LFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNEGKD 394

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+  T +     +  ++TK++R + K +   L Y    K+  + A               
Sbjct: 395 LHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSPKSLIEYAKAN------------ 442

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                               ++  + + + +    +  +     
Sbjct: 443 --------------------------YGVSINLQEAKKFHENYFKFYKSFKDWHDR---- 472

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            ++ ++  +                            GR L                   
Sbjct: 473 VKEHLDKHRFTTL--------------------ETLLGRKL------------------- 493

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMM----NATKAGYDIVLTVHDEIVCETPDTDEFN 643
                         +Q    D+L   ++            +V  VHDEI+ E    D   
Sbjct: 494 --IAYKFTDAVNYPIQGSGSDLLKMAVVFFFKERNDLDAKVVNLVHDEILVEVAANDIEK 551

Query: 644 ASMLY-HLMTSNPSWAK-GLPLKAEGYESKRYRK 675
           A  +    M          +P+  E   S  + K
Sbjct: 552 AKEVLSSSMEKAGKLILKDVPVAFEMVVSDSWSK 585


>gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34]
 gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 878

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/661 (13%), Positives = 181/661 (27%), Gaps = 139/661 (21%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++           F + +          D +   + K AL             ++   
Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376

Query: 79  --VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
             VL +   +D+P      + +             +    +L +  + +  E +  + KG
Sbjct: 377 SKVLLSHLGVDLP-APAFDSRLAKYLL-STVDDNELSTIARLYTDYVLDSDEAV--YGKG 432

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-EIFKRLEPLS--SKEQELWYLDQTIN 193
                       +H     +   Y +    V   ++ +  +       EQ L  +   + 
Sbjct: 433 VKRAVPKKAVLLSHLARKIVVLNYSEK---VMLDKLTEHQQASLLFDMEQPLANVLAKME 489

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL-- 251
             G  V  A    +         +L QE+  L      +    ++L   LF +  L    
Sbjct: 490 IAGISVKKATLQEMEASNQAVIDELTQEIYDLAGM-EFNINSPKQLGELLFDKMQLPTSY 548

Query: 252 EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
              T+   +T   VL     ++P   ++   R   ++     +  L + +  DG++    
Sbjct: 549 TKKTKTGYSTAVDVLERLAPISPIVSKILEYRQ-IAKLQSTYIVGLQDFILQDGKIHTRY 607

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                ++TGR S      QN+P                                 +R   
Sbjct: 608 LQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAF 641

Query: 369 IAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTK 426
           +   E + L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +     VT 
Sbjct: 642 VPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTP 701

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +   + Y               L +          +  E +   +N+   + 
Sbjct: 702 NDRRNAKAVNFGIVYGIS-----DYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVV 756

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
            +  +    +       E      R  +  + +      +    +   G A    K   +
Sbjct: 757 RDAKDKGYVETLFHRRRELPDINSR--NFNIRQF---AERTAINSPIQGSAADILKIAMI 811

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
            L     D      ML                                            
Sbjct: 812 NLDKALVDGQFKTKML-------------------------------------------- 827

Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKA 665
                   +        I+L V        P  +      ++   M S       +PL A
Sbjct: 828 --------LQVHDE---IILQV--------PKDELEAVKTLVKETMESAID--LSVPLIA 866

Query: 666 E 666
           +
Sbjct: 867 D 867


>gi|73951787|ref|XP_545922.2| PREDICTED: similar to polymerase (DNA directed) nu [Canis
           familiaris]
          Length = 947

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 90/639 (14%), Positives = 179/639 (28%), Gaps = 131/639 (20%)

Query: 67  TIVAHNSY-FERTVLKACFNLDIPIHRWI----CTLVLARSNGLPSALKAVGEALKLSSQ 121
            ++  N+  F RTVL+   N     H          + A              A      
Sbjct: 315 PVICFNAKDFVRTVLQIFGNEGSWKHVVHFVGLDPRIAAWLIDPGE------AATSFEDL 368

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
             +  +  I+            +    N R   ++        +    +++   +   + 
Sbjct: 369 VAKFLESSISVKVNSTYGNSSRNVVNQNVRVNLKILYR-LTMGLCSQLKVYGLWQLFCTL 427

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           E  L  +   +      V+       + ++     +L+QE   +            +L+ 
Sbjct: 428 ELPLIPILAVMESHSIRVNREEMERTSALLGSRLKELEQEAHFVAG-EQFLITSNNQLQE 486

Query: 242 WLFLETGL-------HLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            LF +  L        L         +T + VL++ + L P    +   R    ++    
Sbjct: 487 ILFGKLKLHLMSPMETLPRTGLQRLPSTSEAVLNALQDLHPLPKIILEYRR-VHKTKSAF 545

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L+  +   G +       G + TGR S      Q + +      +         T +
Sbjct: 546 VDGLLAFVRK-GSISSMWNQTG-TVTGRLSARHPNIQGISKHPIKITKPQNFKGTEGTML 603

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET--GEDL 408
           T  P          RS  +A E    + AD + IE R+LA ++G+   LK F     +D+
Sbjct: 604 TISP----------RSMFVAPESHTFLAADFSQIELRILAHLSGDPELLKLFRESGRDDV 653

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           + T  ++  ++ P  VT   R   K +  ++ Y                           
Sbjct: 654 FSTLTSQWKDIPPECVTYADREQTKKVVYSVVYG-------------------------- 687

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                                   A           +  +++ QK+ ++ +    +    
Sbjct: 688 ------------------AGKERLAACLGVTVQEAAQFLESFLQKYKKIKDF---VQTTI 726

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
            Q  + G                             GR      V +          Q  
Sbjct: 727 AQCHQTGYVASI-----------------------MGRRRPLPRVHDQDQ---QLRAQAE 760

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPDTDE 641
           R+          +VQ  + D+    M+   +A          +V  +HDE++ E  D+  
Sbjct: 761 RQA------VNFVVQGSAADLCKMAMIRIFRAVATSPTLTARLVAQIHDELLFEVEDSQI 814

Query: 642 FNASMLYH-LMT-----SNPSWAKGLPLKAEGYESKRYR 674
              + L    M              +PLK        + 
Sbjct: 815 PEFAALVRGTMESLQYVRALGLQLQVPLKVSLSAGPSWG 853


>gi|332259946|ref|XP_003279044.1| PREDICTED: DNA polymerase nu-like [Nomascus leucogenys]
          Length = 1502

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 91/648 (14%), Positives = 184/648 (28%), Gaps = 149/648 (22%)

Query: 67   TIVAHNSYFERT-VLKACFNLDIPIHRWIC-----TLVLARSNGLPSALKAVGEALKLSS 120
             ++  N+  +   +L   F  D               + A                    
Sbjct: 917  PVICFNAK-DFVRILLQFFGNDGSWKHVADFVGLDPRIAAWLIDPS-------------- 961

Query: 121  QKMEEGKELIARFCKGETHE------CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  ++L+ ++C+               RN  N      L   Y +  + +  ++   
Sbjct: 962  DATPSFEDLVEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKILY-RLTMDLCSKLKDY 1020

Query: 175  LEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                     EL    +   +      V+       + ++     +L+QE   +       
Sbjct: 1021 GLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERFL 1079

Query: 233  SRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRM 281
                 +L+  LF +  L             L +  +T + VL++ + L P    +   R 
Sbjct: 1080 IMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQ 1139

Query: 282  RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
               +     ++ L+ A    G +  T    G + TGR S      Q + +          
Sbjct: 1140 -VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKN 1196

Query: 342  IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                    +T  P          R+  ++S+G   + AD + IE R+LA ++G+   LK 
Sbjct: 1197 FKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKL 1246

Query: 402  FET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            F+    +D++ T  ++  +V   QVT   R   K +  A+ Y                  
Sbjct: 1247 FQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY------------------ 1288

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                             A           +  +++ QK+ ++ +
Sbjct: 1289 --------------------------GAGKERLAACLGIPVQEAAQFLESFLQKYKKIKD 1322

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                   A  Q  + G  +                          GR      +    ++
Sbjct: 1323 F---ARAAIAQCHQTGYVVSI-----------------------MGRRRPLPRIH---AH 1353

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM----NATKAG---YDIVLTVHDEI 632
                  Q  R+          +VQ  + D+    M+        +G     +V  +HDE+
Sbjct: 1354 DQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASGTLTARLVAQIHDEL 1407

Query: 633  VCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674
            + E  D      A+++   M              +PLK      + + 
Sbjct: 1408 LFEVEDPQIPECAALVRRTMESLEQVQALELRLQVPLKVSLSVGRSWG 1455


>gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 872

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 94/595 (15%), Positives = 160/595 (26%), Gaps = 132/595 (22%)

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            I   RW    + A                         G EL                 
Sbjct: 400 GIDPARWFDLGLAAYLLNPEE------RDYGWPRLAARWGDELERSSGNPGL-------- 445

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                 A  + G                   + + E  L  +   +   G  VD+     
Sbjct: 446 -----LALEMAGALSGRLAGAQL-----SRLMRTLEMPLIPVLADMEAAGIAVDLDAFAA 495

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRV 262
             + V  E  +L +++     G   + R  ++L   LF   GL     T+    +T Q V
Sbjct: 496 FLREVQGELDRLTRDVYKAAGG-EFNIRSSQQLAELLFGTLGLPTGGKTKGGQTSTAQDV 554

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L       P    +   R +  +     L  L   ++  GR+  T   L A+ TGR S  
Sbjct: 555 LEKLSGRHPVVDAILEFR-KLEKLRSTYLEPLPRLVDGAGRIHTTFNQL-ATATGRLSSS 612

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+P                                 +R+C  A+ G +LV AD +
Sbjct: 613 NPNLQNIPVRGDLGRR-------------------------MRTCFTAAPGLRLVSADYS 647

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            +E RVLA M+ +   L AF  G D++  T +  ++VA  QV+ DQR   K +   L Y 
Sbjct: 648 QVELRVLAHMSQDPTLLAAFREGADIHSRTASLLYDVAQDQVSTDQRRNAKTINFGLIYG 707

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
            G +   +      L +              + +    F    +    E        G  
Sbjct: 708 MGPQKLAQE-----LRIPLTEAKAFIERYFSKLQKLREFYDEAETTARELGYVTTMAGR- 761

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
                   R+    +     +L     +   N                + +     I+ L
Sbjct: 762 --------RRLLPEIHSENTQLKSQARRQAIN---------------TLIQGSAADIIKL 798

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
                            +                +                 +       
Sbjct: 799 ----------------AMLAAHADPELRALNARLI-----------------LQVHDE-- 823

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMT--SNPSWAKGLPLKAEGYESKRYR 674
            ++L        E P  +   A   L  +M+       A  +PL  +  + + + 
Sbjct: 824 -LLL--------EVPADNAPAAGERLAAIMSGVRPGGVALDVPLAVDWGQGENWG 869


>gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
 gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641]
          Length = 881

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 94/661 (14%), Positives = 183/661 (27%), Gaps = 138/661 (20%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNL 86
           +I FA+G               +   + KE LE      V     ++     VL +   +
Sbjct: 338 IIGFAWGTKGQ--LYVSTDTGLLQTPIFKEFLE-KTPLKV-----YDFKRAKVLLSHLGI 389

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +  +    + +                        +      I        +     + 
Sbjct: 390 TLQ-NPAFDSRLAKYLL---------STVEDNEISTIASLYSQITLPLDEVVYGKGAKKI 439

Query: 147 KPNHREAWRLFGEYCK--GDVT--VTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVD 200
            P                 D    +T ++    +       EQ L  +   +   G  V+
Sbjct: 440 IPEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKMEIAGIKVE 499

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    +    +L QE+  L      +    ++L   LF +  L L     T+  
Sbjct: 500 RQTLQDMQVENEAVLERLTQEIYELAG-EEFNINSPKQLGVILFEKLELPLEYTKKTKTG 558

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++   R   ++     +  L + +  DG++         ++
Sbjct: 559 YSTAVDVLERLAPIAPIVSKILEYRQ-IAKIQSTYVIGLQDWILEDGKIHTRYVQD-LTQ 616

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GK 374
           TGR S      QN+P                                 +R   +  E   
Sbjct: 617 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEEVNS 651

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433
            L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R FN+  P  VT + R   K
Sbjct: 652 VLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDRRNAK 711

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y            +  L ++         +  E +   +++   +     +  
Sbjct: 712 AVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKG 766

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
             +       E        ++  V        +    +   G A    K   + L     
Sbjct: 767 YVETLFKRRRE--IPDINSRNFNVRGF---AERTAINSPIQGSAADILKIAMIHLD---- 817

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                                           Q      Y  K+                
Sbjct: 818 --------------------------------QALEAGAYKTKM---------------- 829

Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKR 672
           ++        IVL V        P  +      ++   M S    A  +PL+A+  E K 
Sbjct: 830 LLQVHDE---IVLQV--------PTDELAAIKALVKETMESAIELA--VPLEADENEGKT 876

Query: 673 Y 673
           +
Sbjct: 877 W 877


>gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
 gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B]
          Length = 878

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 92/488 (18%), Positives = 147/488 (30%), Gaps = 108/488 (22%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  +D A        V  E  +L+  +  L      + R   +L   L+   GL  
Sbjct: 491 MERIGIGIDTAALAAFGAEVATELARLEGAIRELAG-EGFNPRSSRQLGEVLYGRMGLKP 549

Query: 252 EDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
              T     +T Q  L       P   ++   R +  +     L+ L    ++ GR+  T
Sbjct: 550 RGKTPGGAASTSQEALERLAGENPLVDRILEFR-KLEKLRSTYLDPLPRLADAAGRIHTT 608

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                A+ TGR S      QN+P                             +   +R C
Sbjct: 609 FN-NLATATGRLSSSNPNLQNIPIRG-------------------------TLGRRMREC 642

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            +A+ GKKLV AD + IE RVLA ++GE   L AFE G D++  T A  F+ A A +  D
Sbjct: 643 FVAAAGKKLVAADYSQIELRVLAHLSGEPALLAAFEQGADIHARTAAILFDKAEADIRPD 702

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
           +R   K +   L Y  G +   +      L +   A         E       F + + +
Sbjct: 703 ERRQAKTINFGLLYGMGPQKLSR-----DLGIKLDAAKAFIEKYFERLSGLSTFYQGIVD 757

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                       G          R+    +    ++L     +   N             
Sbjct: 758 TAKAQGFVTTLAGR---------RRLLPEIHSANSQLASQARRQAINTVV---------- 798

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                                        +       +          +L       +  
Sbjct: 799 -----------------------------QGGAADIIKMAMLAAHNDPELA-----GLGA 824

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
                 M          VL VHDE++ ETP+     A   L  LM    + A  +PL  +
Sbjct: 825 -----AM----------VLQVHDELLLETPEAAAQAAGERLSALMCGVVALA--VPLAVD 867

Query: 667 GYESKRYR 674
               + + 
Sbjct: 868 WGAGQTWG 875


>gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix
           jacchus]
          Length = 965

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 90/644 (13%), Positives = 182/644 (28%), Gaps = 141/644 (21%)

Query: 67  TIVAHNSY-FERTVLKACFNLD----IPIHRWICTLVLARSNGLPS---ALKAVGEALKL 118
            ++  N+  F R VL+   N      +     +   + A          + + + E    
Sbjct: 378 PVICFNAKDFVRIVLQFFGNNGSWKHVADFVGLDPRIAAWLIDPSDAAPSFEDLVEKY-- 435

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K    K                 RN  N      L   Y +  + +  ++       
Sbjct: 436 -CDKSITVKVSSTY--------GNSSRNIVNQNVRENLKILY-RLTMDLCSKLKDYGLWQ 485

Query: 179 SSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                EL    +   +      V+       + ++     +L+QE   +           
Sbjct: 486 LFCTLELPLIPILAVMESHTIQVNKEEMEKTSSLLGARLKELEQEAHFVAG-EQFLIMSN 544

Query: 237 EKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
            +L+  LF +  L             L +  +T + VL++ + + P    +   R    +
Sbjct: 545 NQLREILFGKLKLHLLSPRNCFPRTGLQKYPSTSEAVLNALRDVHPLPKIILEYRQ-VHK 603

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                ++ L+ A    G +  T    G + TGR S      Q + +      +       
Sbjct: 604 IKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITKPKNFKGK 661

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET- 404
               +T  P          R+  ++S+G   + AD + IE R+LA ++G+   LK F+  
Sbjct: 662 EDEILTICP----------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQES 711

Query: 405 -GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
             +D++ T  ++  +V    VT   R   K +  ++ Y                      
Sbjct: 712 ERDDVFSTLTSQWKDVPVEHVTHADREQTKKVVYSVVY---------------------- 749

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                        A           +  +++ QK+ ++ +    
Sbjct: 750 ----------------------GAGKERLAACLGVPVQEAAQFLESFLQKYKKIKDF--- 784

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
              A  Q  + G  +                          GR      +          
Sbjct: 785 AQAAIAQCHQTGYMVSI-----------------------MGRRRPLPRIHARDQ---QL 818

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCET 636
             Q  R+          +VQ  + D+    M+               +V  +HDE++ E 
Sbjct: 819 QAQAERQA------VNFVVQGSAADLCKLAMIRVFAAVAASHTLTARLVAQIHDELLFEV 872

Query: 637 PDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674
            D+     A+++   M              +PLK      + + 
Sbjct: 873 EDSQIPECAALVRRTMESLEQVQVLELQLQVPLKVSLSAGRSWG 916


>gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 888

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/639 (14%), Positives = 169/639 (26%), Gaps = 120/639 (18%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +D        +  L   L + +   V HN+     V        I       T + A  
Sbjct: 356 WFDPSELDEADERALTAWLADPERPKVFHNAKGAMRVFAEH-GWTIEGVTM-DTALAAYL 413

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                       +  L +  +E     +A     +        +                
Sbjct: 414 VKPGR------RSFDLDALSLEYLHRELAPAAAPDGQLAFGADDGAEAEALMVQARAILD 467

Query: 163 GDVTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
                   + +          E     L   +   G   D      + Q+      +  +
Sbjct: 468 LGEAFEGRLAEVGAADLLRDMELPTSALLARMERHGIAADREHLQAMEQMFAGAVQQAVK 527

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTP-QAIQV 276
           E  +       +    ++L+  LF E  L     T+T        L+     T  +   +
Sbjct: 528 EAHAAAGH-EFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLATQTDNELPVI 586

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                  ++  V  +  L++ + +DGR+  T     A+ TGR S      QN+P  +   
Sbjct: 587 MLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEG 644

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGE 395
                                      +R   +  EG + L+ AD + IE RV+A ++ +
Sbjct: 645 RA-------------------------IRRGFVVGEGFESLLTADYSQIELRVMAHLSED 679

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +AF +GEDL+ T  A+ F+V  + V  + R   K M   L Y            + 
Sbjct: 680 AGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQ 734

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
            LN+         ++  E +    ++ R + +            G             +S
Sbjct: 735 QLNIEAAEARALMDAYFERFGGVRDYLRRVVDEARATGYTATLFGRRRYLP-----DLNS 789

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
              +      +        G A    K   + +                 R+L   D+ +
Sbjct: 790 DNRQRREAAERMALNAPIQGTAADIVKIAMLNVD----------------RALREADLRS 833

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                                                 ++              DEIV E
Sbjct: 834 ------------------------------------RMLLQVH-----------DEIVLE 846

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
               +      L    M++       +PL         +
Sbjct: 847 LAPGERAAVEELVRREMSTAVE--LRVPLGVSVGAGPDW 883


>gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
 gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1]
          Length = 848

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 103/608 (16%), Positives = 166/608 (27%), Gaps = 159/608 (26%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKG 136
           LK  F L      W                  L  + + L    ++              
Sbjct: 379 LKRLFGLTGLSGSW-DLKTAHYLLHPDLTAHGLPDLADGLPFGPERT------------- 424

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                   R  P   +       Y   D+  T ++             L      +   G
Sbjct: 425 -------LRLFPLAEDLNEKIESYGMTDLMKTVDL------------PLLPALVRMEQAG 465

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--- 253
             +D          ++    ++  E+ +   G + +    +++   LF + GL +     
Sbjct: 466 VHLDGPAMVAFTAQLEASLDRVSGEILTYAGGPI-NLNSPKQVGELLFEKLGLPVIKRTA 524

Query: 254 -LTETTCQRVLSSNK----KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
               +T   VL +       + P    +  +R   S+        +  A  S   +  + 
Sbjct: 525 QKGYSTDVSVLETLCRSVGDICPVPALLLEHR-ELSKMLSGF--AVPLAAASRDGVVHST 581

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TGR S      QNLP                        +  ++     R C+
Sbjct: 582 FEAQTTGTGRLSSRDPNLQNLP------------------------NYSELGGQLCR-CL 616

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
            A  G   V AD + IE RVLA ++GE+   + FE G D++  T A    +    VTK+Q
Sbjct: 617 TAGPGGVFVAADYSQIELRVLAHLSGERRLREIFEAGRDIHTETAAMILGIPADSVTKEQ 676

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R + K +   L Y   A           L++                             
Sbjct: 677 RRMAKTVTFGLLYGMSA-----FGLADRLSVGQA-------------------------- 705

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                            +  A+      V E    +     +    G +  A        
Sbjct: 706 -------------EARGIMDAYFAALPGVREY---VDATVAEARRRGYSQTAY------- 742

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR     +V    +   T      R            VQ  + D
Sbjct: 743 ----------------GRIRPLDEVA---TGRQTDRGHARRVAINSP------VQGTAAD 777

Query: 609 ILAEGMMNATK----AGYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSWAKGLPL 663
           I    M+   +    AG  +VL VHD IVC  TP+  E     L   MT        +PL
Sbjct: 778 ITKMAMITVDRELAAAGVPMVLQVHDSIVCRTTPENAEPVGKKLAEFMTGAVK--LSVPL 835

Query: 664 KAEGYESK 671
             E    K
Sbjct: 836 AVETKTGK 843


>gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201]
 gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201]
          Length = 960

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 77/515 (14%), Positives = 151/515 (29%), Gaps = 130/515 (25%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  +D      L + +     +  ++ ++     V +    ++L
Sbjct: 550 ELEMPLAVILARMEATGIAMDRPGIDVLFEDLQHPIDQAFEQAQAQIDHEV-NLGSTKQL 608

Query: 240 KTWLFLETGLHLEDL-------TETTCQRVLSSNKKLTPQAIQV--FNNRMRASRSAVLK 290
           +  +F E GL              +    ++      T  +  +    N    S+   + 
Sbjct: 609 QAVMFDELGLPKTKKTKTGYTTDASAVADLIGKVSPDTAGSRFLVALMNWREYSKLKQI- 667

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +  L +A+  DGR+  T Q   A+ TGR S      QN+P  +                 
Sbjct: 668 VAGLRDAIAEDGRIHTTYQQTVAA-TGRLSSTGPNLQNIPVRTEQG-------------- 712

Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-----LVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                        +R   +  E  +     L+ AD + IE R++A ++G++  ++AF  G
Sbjct: 713 -----------QRIRDVFVVGEDTQGPFECLMTADYSQIEMRIMAHLSGDEGLIEAFRGG 761

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           EDL+    +R F+VAP  VT   R+  K M   L Y            +  L+       
Sbjct: 762 EDLHRFVGSRVFDVAPEDVTPQMRSKVKAMSYGLVYG-----LSSYGLSQQLH------- 809

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                                                   +   + ++   V +    + 
Sbjct: 810 --------------------------------IGVDEARTMMSGYFERFGGVRDFLRGVV 837

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +                                      GR     D+ ++        +
Sbjct: 838 EEARS--------------------------KGYTETIDGRRRYLPDLTSDN---RQARQ 868

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDT 639
              R            +Q  + DI+ + M+   +A         ++L VHDE++ E    
Sbjct: 869 AAERMALNAP------IQGSAADIIKKAMIGVDRALRDGQLRSRVLLQVHDELIVEVAPG 922

Query: 640 DEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +      +    M         +PL       + +
Sbjct: 923 EREEVERILRTEMAGAAE--LTVPLDVNVGTGRTW 955


>gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515]
 gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515]
          Length = 880

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 102/688 (14%), Positives = 191/688 (27%), Gaps = 150/688 (21%)

Query: 9   ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALEN 63
           E  S  D       G   + ED    L    + +          D  + Q    K+AL  
Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSDVSLLQEALFKKALSK 369

Query: 64  TDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEA 115
                      ++     VL   FN+D+P      T +           L S +  +   
Sbjct: 370 P--IKT-----YDFKRSKVLLNRFNIDLP-EPAFDTRLAKYLLSTTEDNLVSTIARLYTN 421

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L L +     GK       +                   +        +  + +++    
Sbjct: 422 LPLDTDDAVYGKGAKRAIPEKTR----------FLEHLAKKVKVLVDSEANIMQQLKANE 471

Query: 176 EPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +       EQ L  +   +  RG  V     + +          L QE+  L      + 
Sbjct: 472 QEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ-EFNI 530

Query: 234 RCLEKLKTWLFLETGLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              ++L   LF   GL +     T+   +T   VL     ++P   ++   R   ++   
Sbjct: 531 NSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQ-ITKLQS 589

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L + +  DG++         ++TGR S      QN+P                  
Sbjct: 590 TYIIGLQDYILEDGKIHTRYVQD-LTQTGRLSSSDPNLQNIPVRLEQGR----------- 637

Query: 349 SITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R   + SE    L+ +D + IE RVLA ++ ++  + AF+ G D
Sbjct: 638 --------------LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGAD 683

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++ +T  R F +  P  VT + R   K +   + Y            +  L +       
Sbjct: 684 IHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS-----DFGLSHNLGIPRKLAKQ 738

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             ++  E +   +N+   +     +    +        R       ++  + +      +
Sbjct: 739 YIDTYFERYPGIKNYMETVVREAKDKGYVETLFHR--RRSLPDINSRNFNIRQF---AER 793

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
               +   G A    K   + L  +         ML                        
Sbjct: 794 TAINSPIQGSAADILKIAMINLDRVLYKGGYKSKML------------------------ 829

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                                       +        IVL V        P+ +      
Sbjct: 830 ----------------------------LQVHDE---IVLEV--------PNEEIGAIKE 850

Query: 647 LY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           L    M S  S    +PL A+    + +
Sbjct: 851 LVTKTMESAIS--LSVPLIADENAGETW 876


>gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1]
 gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1]
          Length = 880

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 105/684 (15%), Positives = 191/684 (27%), Gaps = 142/684 (20%)

Query: 9   ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALEN 63
           E  S  D       G   + ED    L    + +          D  + Q    K+AL  
Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSDVSLLQEALFKKALSK 369

Query: 64  TDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL--K 117
                      ++     VL   FN+D+P      T +           L +    L   
Sbjct: 370 P--IKT-----YDFKRSKVLLNRFNIDLP-EPAFDTRLAKYLLSTTEDNLVSTIARLYTN 421

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L     +        + KG             H           + +V    +  ++ E 
Sbjct: 422 LPLDTDDAV------YGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANVMQQLKANEQEEL 475

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           L   EQ L  +   +  RG  V     + +          L QE+  L      +    +
Sbjct: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ-EFNINSPK 534

Query: 238 KLKTWLFLETGLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +L   LF   GL +     T+   +T   VL     ++P   ++   R   ++     + 
Sbjct: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQ-ITKLQSTYII 593

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L + +  DG++         ++TGR S      QN+P                      
Sbjct: 594 GLQDYILEDGKIHTRYVQD-LTQTGRLSSSDPNLQNIPVRLEQGR--------------- 637

Query: 353 DPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT 411
                      +R   + SE    L+ +D + IE RVLA ++ ++  + AF+ G D++ +
Sbjct: 638 ----------LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTS 687

Query: 412 TYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           T  R F +  P  VT + R   K +   + Y            +  L +         ++
Sbjct: 688 TAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS-----DFGLSHNLGIPRKLAKQYIDT 742

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             E +   +N+   +     +    +        R       ++  + +      +    
Sbjct: 743 YFERYPGIKNYMETVVREAKDKGYVETLFHR--RRSLPDINSRNFNIRQF---AERTAIN 797

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
           +   G A    K   + L  +         ML                            
Sbjct: 798 SPIQGSAADILKIAMINLDRVLDKGGYKSKML---------------------------- 829

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-H 649
                                   +        IVL V        P+ +      L   
Sbjct: 830 ------------------------LQVHDE---IVLEV--------PNEEIGAIKELVTK 854

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
            M S  S    +PL A+    + +
Sbjct: 855 TMESAIS--LSVPLIADENAGETW 876


>gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813]
          Length = 880

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 102/688 (14%), Positives = 191/688 (27%), Gaps = 150/688 (21%)

Query: 9   ETRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALEN 63
           E  S  D       G   + ED    L    + +          D  + Q    K+AL  
Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSDVSLLQEALFKKALSK 369

Query: 64  TDVTIVAHNSYFERT---VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEA 115
                      ++     VL   FN+D+P      T +           L S +  +   
Sbjct: 370 P--IKT-----YDFKRSKVLLNRFNIDLP-EPAFDTRLAKYLLSTTEDNLVSTIARLYTN 421

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L L +     GK       +                   +        +  + +++    
Sbjct: 422 LPLDTDDAVYGKGAKRAIPEKTR----------FLDHLAKKVKVLVDSEANIMQQLKVNE 471

Query: 176 EPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +       EQ L  +   +  RG  V     + +          L QE+  L      + 
Sbjct: 472 QEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ-EFNI 530

Query: 234 RCLEKLKTWLFLETGLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              ++L   LF   GL +     T+   +T   VL     ++P   ++   R   ++   
Sbjct: 531 NSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQ-ITKLQS 589

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L + +  DG++         ++TGR S      QN+P                  
Sbjct: 590 TYIIGLQDYILEDGKIHTRYVQD-LTQTGRLSSSDPNLQNIPVRLEQGR----------- 637

Query: 349 SITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R   + SE    L+ +D + IE RVLA ++ ++  + AF+ G D
Sbjct: 638 --------------LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGAD 683

Query: 408 LYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           ++ +T  R F +  P  VT + R   K +   + Y            +  L +       
Sbjct: 684 IHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS-----DFGLSHNLGIPRKLAKQ 738

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             ++  E +   +N+   +     +    +        R       ++  + +      +
Sbjct: 739 YIDTYFERYPGIKNYMETVVREAKDKGYVETLFHR--RRSLPDINSRNFNIRQF---AER 793

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
               +   G A    K   + L  +         ML                        
Sbjct: 794 TAINSPIQGSAADILKIAMINLDRVLDKGGYKSKML------------------------ 829

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                                       +        IVL V        P+ +      
Sbjct: 830 ----------------------------LQVHDE---IVLEV--------PNEEIGAIKE 850

Query: 647 LY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           L    M S  S    +PL A+    + +
Sbjct: 851 LVTKTMESAIS--LSVPLIADENAGETW 876


>gi|262037120|ref|ZP_06010613.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
 gi|261748851|gb|EEY36197.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
          Length = 842

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 82/523 (15%), Positives = 176/523 (33%), Gaps = 59/523 (11%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIH 91
           F F   D    +    H+      + +  E   + +++ +N               +   
Sbjct: 365 FGFVICDGERNIVLLNHENTDYGSINKVYEKLKEKSVIGYNIK-------EYLKKGMGYR 417

Query: 92  RWICTLVLARSNGLPSALKA---VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
           ++   ++     G  S+      +   L ++ +K EE  +        E  +  +   + 
Sbjct: 418 QYFDIMLAWYVLGTESSQDLENIIFSELGVNLEKFEEQFKKRKPEEISEEEKTQFLWERA 477

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
            + +  +   E       +T           + E +L  +  ++   G  ++        
Sbjct: 478 FYVKELKEILENRLKSEDLT-------NVFENLENKLVPVLASMEMYGIKINKEYFENYK 530

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSS 265
           + +     KL+ E+ SL      +    ++L   LF + G+     T+   +T   VL  
Sbjct: 531 KELQENIEKLEGEIYSLLG-EAFNIGSPKQLAEILFDKMGIEPVKKTKTGYSTDVEVLEE 589

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
                 +  +        ++     +  L +  +   R+  T    G + TGR S     
Sbjct: 590 LALRGIEIAEKLLEYRGFTKLLSTYVEPLPKLADEKDRIHTTFNQNG-TSTGRLSSTNPN 648

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+P  +    +                         +R   I+ EG  LV  D + IE
Sbjct: 649 IQNIPVRTDEGIK-------------------------IRKGFISEEGWSLVSFDYSQIE 683

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGG 444
            RVLA ++ ++  + A++  +DL+  T  +  F     QVT+++R+I KV+  ++ Y   
Sbjct: 684 LRVLAELSKDENLVLAYKKDKDLHDLTARKIFFKADEEQVTREERSIAKVINFSILYGKT 743

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                    +  L +      +   +  E++   + F   + EN   +   +   GT   
Sbjct: 744 P-----FGLSKELKIPVADASLYIKTYFEQYPKVKRFLENILENAKLNGFVETLYGT--R 796

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
           R  K     +     L  + ++    T+  G A    K+  + 
Sbjct: 797 RYIKGINSSN---KNLQAQANRMAVNTVVQGTAANIIKKVMIK 836


>gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
 gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043]
          Length = 891

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 101/644 (15%), Positives = 186/644 (28%), Gaps = 126/644 (19%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
             D        +  +   LE+       H++      L       +       T + A  
Sbjct: 355 WVDLTALDPAGEAAVGAWLEDASRPKAMHDAKGPIEALA-ARGWILRGLT-SDTQLAAYL 412

Query: 103 NGL---PSALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                    L  +       +LS+     G+ ++      +    L +  +         
Sbjct: 413 VKPDQRTYHLDDLVLRHLRRELSATTDTHGQGMLDFAGDADEKAALKEMVRATAVRDLAA 472

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
             +     V  T       E LS  E  L ++   +   G  VDV    TL +    + T
Sbjct: 473 VLD---EQVAAT----GGTELLSDIELPLIHVLAKMERTGIAVDVDGLSTLEETFAAKVT 525

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKK--LTP 271
           +  Q+      G   +    ++L+  LF   G+     T+T        L+        P
Sbjct: 526 QAQQDCWDAIGGDQINLGSPKQLQVVLFETLGMPKTKKTKTGYTTDADALAELHAKTEHP 585

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
               +  +R  A++  V  +  L ++++ DGR+  T     A+ TGR S      QN+P 
Sbjct: 586 FLEALLRHR-DAAKLRVT-VEGLQKSVSDDGRIHTTYLQTIAA-TGRLSSTEPNLQNVPI 642

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLA 390
            +                              +R   +  +G   L+ AD + IE RV+A
Sbjct: 643 RTEEGRR-------------------------IRELFVVGDGYDALMSADYSQIEMRVMA 677

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            ++G+   ++AF +GEDL+    ++ F VAP  VT   R+  K M   L Y         
Sbjct: 678 HLSGDSGLIEAFRSGEDLHRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYG-----LSA 732

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
              +  L ++T             +     +   +                         
Sbjct: 733 YGLSKQLAISTEEAKGLMEGYFARFGGVRAYLDEVVAEARGTGFTATMF----------- 781

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                                          +RR +P +     +      +    +L  
Sbjct: 782 ------------------------------GRRRYLPDLTSDNRQRR---EMAERMALNA 808

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
              G+    +      + R  T  G  T  ++Q                        VHD
Sbjct: 809 PIQGSAADIMKVAMIGVDRTLTEAGARTRILLQ------------------------VHD 844

Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           E+V E    ++ +   +    M         +PL       + +
Sbjct: 845 ELVLEVAADEQADVERIVREQMGHAAE--MDVPLDVNIGVGRSW 886


>gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 474

 Score =  219 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 88/592 (14%), Positives = 179/592 (30%), Gaps = 134/592 (22%)

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEGKELI-ARFCKGETHECLYDRNKP 148
            R   T +LA             E +      K    +ELI     K    +        
Sbjct: 3   IRIQDTQILAFLKNP--------EKVGFDEVLKEYLKEELIPHEKIKDFKAKAEKLELLS 54

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
               A +   EY +        +          E     +   +  +G+ +D      L 
Sbjct: 55  VELNALKRLCEYFEKGGLEENLLSLAR----EVETPFVKVLMGMEFQGFKIDAPYFKCLE 110

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           Q    E   L++++  L      +    ++L   L+ + GL  ++ + +T ++ L     
Sbjct: 111 QEFKNELHVLERQILDLIGVD-FNLNSPKQLSEVLYEKLGLP-KNKSHSTDEKSLLKILD 168

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P    +   R   ++        L+   + D ++  T    G + TGR S      QN
Sbjct: 169 KHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQN 226

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEAR 387
           +P  S                              +R   IAS +   L+  D + IE R
Sbjct: 227 IPVRSPKGL-------------------------LIRKGFIASSKEYCLLGVDYSQIELR 261

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA  + ++  ++AF  G D+++ T    F      + K++R+I K +            
Sbjct: 262 LLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKEKRSIAKSIN----------- 307

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G+                                 + +          +   
Sbjct: 308 ---FGLVYGMG------------------------------SKKLSETLNISLNEAKSYI 334

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           +A+ ++   + +  N + +   +T +                               GR 
Sbjct: 335 EAYFKRFPSIKDYLNRMKEEILKTSK--------------------------AFTLLGRY 368

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622
            V+ D      Y+            Y  +    I Q  + D+L  GM+  ++        
Sbjct: 369 RVF-DFTGANDYIKGN---------YLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSV 418

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E  + +       +  ++     +   +PL+   + +KR+
Sbjct: 419 RLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFVAKRW 469


>gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
 gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338]
          Length = 878

 Score =  219 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 88/667 (13%), Positives = 176/667 (26%), Gaps = 151/667 (22%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++           F + +          D +   + K AL             ++   
Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376

Query: 79  --VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
             VL + F +D+P      + +                   +   ++     L   +   
Sbjct: 377 SKVLLSHFGVDLP-APAFDSRLAKYLLS------------TVDDNELSTIARLYTDYVLD 423

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR-------EIFKRLEPLS--SKEQELWY 187
                     K    E   L     +  V +         ++ +  +       EQ L  
Sbjct: 424 SDEAVYGKGVKRAVPEKSVLLSYLARKIVVLNHSEKVMLDKLTEHQQASLLFDMEQPLAN 483

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  V  A    +         +L QE+  L      +    ++L   LF + 
Sbjct: 484 VLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGM-EFNINSPKQLGELLFDKM 542

Query: 248 GLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            L       T+   +T   VL     ++P   ++   R   ++     +  L + +  DG
Sbjct: 543 QLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQ-IAKLQSTYIVGLQDFILQDG 601

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           ++         ++TGR S      QN+P                                
Sbjct: 602 KIHTRYLQD-LTQTGRLSSVDPNLQNIPVRLEQGR------------------------- 635

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   +   E + L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +  
Sbjct: 636 LIRKAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEK 695

Query: 422 -AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              VT + R   K +   + Y               L +          +  E +   +N
Sbjct: 696 TEDVTPNDRRNAKAVNFGIVYGIS-----DYGLANNLGIPRKVAKQYIETYFERYPGIKN 750

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +   +  +  +    +       E      R  +  + +      +    +   G A   
Sbjct: 751 YMERVVRDAKDKGYVETLFHRRRELPDINSR--NFNIRQF---AERTAINSPIQGSAADI 805

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            K   + L     D      ML                                      
Sbjct: 806 LKIAMINLDKALVDGQFKTKML-------------------------------------- 827

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659
                         +        I+L V        P  +      ++   M S      
Sbjct: 828 --------------LQVHDE---IILQV--------PKDELEAVKTLVKETMESAID--L 860

Query: 660 GLPLKAE 666
            +PL A+
Sbjct: 861 SVPLIAD 867


>gi|118197653|ref|YP_874046.1| DNA polymerase [Thermus phage phiYS40]
 gi|116266344|gb|ABJ91427.1| DNA polymerase [Thermus phage phiYS40]
          Length = 703

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 102/732 (13%), Positives = 211/732 (28%), Gaps = 147/732 (20%)

Query: 2   ATLFIDFETRSPIDLTKCG-ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
             + ID ET    D  K G +  Y+    + L    +D + + L+         +   + 
Sbjct: 10  KIVGIDIETW---DGKKGGSLDPYS--GKIALVQIAYDRNNIVLY--RPWEKNFEEALKV 62

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS----NGLPSALKAVGEAL 116
           L + DV  V HN  F+       +  +I       T++ ++        P     + E L
Sbjct: 63  LSDKDVLKVGHNLKFDLKFF---YMNNIYPEPIFDTMIASQMIYAGLDEP---DEISEVL 116

Query: 117 K-LSSQKMEEGKELIARFCKGETHE-------------------CLYDRNKPNHREAWRL 156
           + L      E   +   F K  T                         +N     E    
Sbjct: 117 EALKDDLTTEEVAIFDVFGKKRTKATKFSHSLQAVLKRELNIFLPKDVQNSNWGGELSEA 176

Query: 157 FGEYCKGDV----TVTREIFKRLEPLS-----SKEQELWYLDQTINDRGYCVDVALAHT- 206
             EY   DV     ++ E++K+++ L+       E +   +   +   G  +D       
Sbjct: 177 QKEYAINDVKYLKDLSIELWKKIKALNIENVFMLEMKFLPVLVMLELTGVKIDKEGWKKK 236

Query: 207 -------------------LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
                                + V  +  K+   L         +     ++        
Sbjct: 237 MEKENQELLELEKELKKEIYEKFVSKQSEKMMVGLFEDAEYEKINLNSPLQMAKI----F 292

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
           GL      + T +++        P   +    + + ++         +E +  + RL   
Sbjct: 293 GLPNVS--KLTLEKI------EDPTIKKYVEYKKK-AKLVTTYSKEYLEKLTENNRLMSD 343

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                 + TGR S      QN+P                                  +  
Sbjct: 344 YSQ-TKTATGRISSSNPNLQNVP-------------------------------SWFKRY 371

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV-TK 426
           + A EG   V AD + +E R+LA+++G++  + +  + +D++     + + + P Q    
Sbjct: 372 ITAEEGYVPVFADYSQVELRILAYLSGDEAMIDSCNS-KDMHSENARKIYKIPPDQPVPP 430

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           + R   K +  A+ Y   A          G+  +              +   + F     
Sbjct: 431 ELRKKAKTVSFAIPYGSSAYGLV----VRGMFSSLAEAEEAIEGFFNSFPKVKEFLEKSA 486

Query: 487 ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
           ++          I        + +++ +       +E  +   + +         K   +
Sbjct: 487 KSAQ------NGITRDALGRVRNYKKIY------ISEDEKGALKILMFRLPSGISKDEFI 534

Query: 547 PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
             V  K    +          +   D    +  ++   +          +   + +QA S
Sbjct: 535 KEVLEKNSFKDAA-------KIFGMDEQMLQLAISAYEKTKKLAKI-AREGQNHPIQATS 586

Query: 607 RDILAEGMMNATKAGY-----DIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN-PSWAK 659
             I    M++  +         + LTVHD I  E            +  +M    P    
Sbjct: 587 ASITKTAMVDLLEYLSMTGYGYMTLTVHDSIFFEIKKEFIFDALPKIKEIMEQAGPKVVP 646

Query: 660 GL--PLKAEGYE 669
           G+  P+  E  E
Sbjct: 647 GIITPVDVEVGE 658


>gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9]
 gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03]
          Length = 879

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/663 (14%), Positives = 186/663 (28%), Gaps = 143/663 (21%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++           F + +          D +  +  + AL +  V     N  ++   
Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377

Query: 79  --VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIA 131
             VL +   +D+P        +             S +  +   L L + ++  GK    
Sbjct: 378 SKVLLSHLGIDLPTAN-FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVVYGKGAKR 436

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              + E       +     + A  +  E              + E L   E  L  +   
Sbjct: 437 AIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAE--------HGQSELLFDMELPLANVLAK 488

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  VD    + +         KL Q++  +      +    ++L   LF + GL L
Sbjct: 489 MEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAG-EEFNINSPKQLGVILFEKMGLPL 547

Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+   +T   VL     + P   ++   R   ++     +  L + +  DG++  
Sbjct: 548 EYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQ-ITKLQSTYVLGLQDYILEDGKIHT 606

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  ++TGR S      QN+P                                 +R 
Sbjct: 607 RYMQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 640

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             + S +   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  V
Sbjct: 641 AFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDV 700

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T + R   K +   + Y            +  L ++        ++  E +   + +   
Sbjct: 701 TPNDRRNAKAVNFGIVYGIS-----DFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDN 755

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
           +     +            E      R  +  V        +    +   G A    K  
Sbjct: 756 VVREAKDKGYVSTLFHRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADILKIA 810

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
            + L     +      ML                                          
Sbjct: 811 MINLDKALVEGGYKTKML------------------------------------------ 828

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPL 663
                     +        IVL V        P  +      ++   M S    A  +PL
Sbjct: 829 ----------LQVHDE---IVLEV--------PSDELLAMKALVKETMESAVELA--VPL 865

Query: 664 KAE 666
            A+
Sbjct: 866 IAD 868


>gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1]
          Length = 850

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/524 (15%), Positives = 153/524 (29%), Gaps = 124/524 (23%)

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
            LF      D  +T       + +   +  L  +   +   G  +D +    L + +   
Sbjct: 427 ALFRLRQGLDAAMT-RHQGLRDVMEGIDLPLIPVLLRMERWGVRLDPSRFAALQEELAAR 485

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----TTCQRVLSSNKK- 268
              ++ ++E +    V +    +++   LF++ G   E  T+     +T   VL    + 
Sbjct: 486 IRAIEAQVEDMAGTAV-NLNSPKQVADLLFVQLGFAPEGKTKGKTGFSTGAAVLEHLARL 544

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
              +   +       S+     +  L +A      +  T      + TGR S      QN
Sbjct: 545 PGGEVPALLLEHRELSKMQSGFVVPLQKAAEEGEGVIHTTFEPALTGTGRLSSRDPNLQN 604

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEAR 387
           +P                              ++ ++  ++   EG   V AD + IE R
Sbjct: 605 IP-------------------------AFGQWAERIKQGLVPVREGNVFVAADYSQIELR 639

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           VLA M+ E   ++AF  G D++  T +  F++AP  VT + R +                
Sbjct: 640 VLAHMSREPRLVEAFRNGRDIHRETASWVFSMAPEFVTPELRRVA--------------K 685

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G++    A  +                                       + 
Sbjct: 686 MINFGLLYGMSAFGLAERLDM------------------------------PRGEASMIV 715

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           K + +    V     ++ +                                     +GR 
Sbjct: 716 KRYFEALPGVQSFLKDIVKEAHAA--------------------------GFARTLAGRI 749

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GY 622
               +V             L R       L    +Q  + DI  + M++  +A       
Sbjct: 750 RPVDEVTA------QGRGGLDRV------LVNTPIQGTAADIARKAMVDFDRAFRHDGEV 797

Query: 623 DIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKA 665
            + L VHD +VCE P          L  +M +  +    LPL+ 
Sbjct: 798 RLFLQVHDSLVCECPAARAEEVGHSLREIMMNAAT--LSLPLEV 839


>gi|112420958|ref|NP_861524.2| DNA polymerase nu [Homo sapiens]
 gi|90101282|sp|Q7Z5Q5|DPOLN_HUMAN RecName: Full=DNA polymerase nu
 gi|66268799|gb|AAY43130.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|119602945|gb|EAW82539.1| polymerase (DNA directed) nu, isoform CRA_b [Homo sapiens]
 gi|123241603|emb|CAM16854.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|123257784|emb|CAM20461.1| polymerase (DNA directed) nu [Homo sapiens]
 gi|148922010|gb|AAI46298.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319058|gb|AAI56717.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|162319324|gb|AAI56872.1| Polymerase (DNA directed) nu [synthetic construct]
 gi|261858178|dbj|BAI45611.1| polymerase (DNA directed) nu [synthetic construct]
          Length = 900

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/649 (14%), Positives = 190/649 (29%), Gaps = 151/649 (23%)

Query: 67  TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117
            ++  N+  F R VL   F  D               + A          + + + E   
Sbjct: 315 PVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY- 372

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              +K    K                 R      E  +           +T ++  +L+ 
Sbjct: 373 --CEKSITVKVNSTYGNSSRNIVNQNVR------ENLKTLYR-------LTMDLCSKLKD 417

Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
               +        L  +   +      V+       + ++     +L+QE   +      
Sbjct: 418 YGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERF 476

Query: 232 SSRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +L+  LF +  L             L +  +T + VL++ + L P    +   R
Sbjct: 477 LITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYR 536

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L+ A    G +  T    G + TGR S      Q + +         
Sbjct: 537 Q-VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPK 593

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                    +T  P          R+  ++S+G   + AD + IE R+L  ++G+   LK
Sbjct: 594 NFKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLK 643

Query: 401 AFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            F+    +D++ T  ++  +V   QVT   R   K +  A+ Y  GA   + +A+  G+ 
Sbjct: 644 LFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY--GAGKER-LAACLGVP 700

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +                                             +  +++ QK+ ++ 
Sbjct: 701 IQ-----------------------------------------EAAQFLESFLQKYKKIK 719

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +       A  Q  + G  +                          GR      +    +
Sbjct: 720 DF---ARAAIAQCHQTGCVVSI-----------------------MGRRRPLPRIH---A 750

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDE 631
           +      Q  R+          +VQ  + D+    M++              +V  +HDE
Sbjct: 751 HDQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDE 804

Query: 632 IVCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674
           ++ E  D      A+++   M              +PLK      + + 
Sbjct: 805 LLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWG 853


>gi|32306441|gb|AAN52116.1| DNA polymerase N [Homo sapiens]
          Length = 900

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/649 (14%), Positives = 190/649 (29%), Gaps = 151/649 (23%)

Query: 67  TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117
            ++  N+  F R VL   F  D               + A          + + + E   
Sbjct: 315 PVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY- 372

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              +K    K                 R      E  +           +T ++  +L+ 
Sbjct: 373 --CEKSITVKVNSTYGNSSRNIVNQNVR------ENLKTLYR-------LTMDLCSKLKD 417

Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
               +        L  +   +      V+       + ++     +L+QE   +      
Sbjct: 418 YGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERF 476

Query: 232 SSRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +L+  LF +  L             L +  +T + VL++ + L P    +   R
Sbjct: 477 LITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYR 536

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L+ A    G +  T    G + TGR S      Q + +         
Sbjct: 537 Q-VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPK 593

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                    +T  P          R+  ++S+G   + AD + IE R+L  ++G+   LK
Sbjct: 594 NFKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLK 643

Query: 401 AFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            F+    +D++ T  ++  +V   QVT   R   K +  A+ Y  GA   + +A+  G+ 
Sbjct: 644 LFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY--GAGKER-LAACLGVP 700

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +                                             +  +++ QK+ ++ 
Sbjct: 701 IQ-----------------------------------------EAAQFLESFLQKYKKIK 719

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +       A  Q  + G  +                          GR      +    +
Sbjct: 720 DF---ARAAIAQCHQTGCVVSI-----------------------MGRRRPLPRIH---A 750

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDE 631
           +      Q  R+          +VQ  + D+    M++              +V  +HDE
Sbjct: 751 HDQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDE 804

Query: 632 IVCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674
           ++ E  D      A+++   M              +PLK      + + 
Sbjct: 805 LLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWG 853


>gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 878

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/665 (13%), Positives = 179/665 (26%), Gaps = 147/665 (22%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++           F + +          D +   + K AL             ++   
Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376

Query: 79  --VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIA 131
             VL +   +D+P      + +             S +  +     L S +   GK +  
Sbjct: 377 SKVLLSHLGVDLP-APAFDSRLAKYLLSTVDDNELSTIARLYTDYVLDSDEAVYGKGVKR 435

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLD 189
              K         R       + ++  +          ++ +  +       EQ L  + 
Sbjct: 436 AVPKKAVLLSHLARKIVVLNHSEKVMLD----------KLTEHQQASLLFDMEQPLANVL 485

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G  V  A    +         +L QE+  L      +    ++L   LF +  L
Sbjct: 486 AKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGM-EFNINSPKQLGELLFDKMQL 544

Query: 250 HL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
                  T+   +T   VL     ++P   ++   R   ++     +  L + +  DG++
Sbjct: 545 PTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQ-IAKLQSTYIVGLQDFILQDGKI 603

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
                    ++TGR S      QN+P                                 +
Sbjct: 604 HTRYLQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LI 637

Query: 365 RSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-A 422
           R   +   E + L+ +D + IE RVLA ++ ++  + AF  G D++ +T  R F +    
Sbjct: 638 RKAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTE 697

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT + R   K +   + Y               L +          +  E +   +N+ 
Sbjct: 698 DVTPNDRRNAKAVNFGIVYGIS-----DYGLANNLGIPRKVAKQYIETYFERYPGIKNYM 752

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
             +  +  +    +       E      R  +  + +      +    +   G A    K
Sbjct: 753 ERVVRDAKDKGYVETLFHRRRELPDINSR--NFNIRQF---AERTAINSPIQGSAADILK 807

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
              + L     D      ML                                        
Sbjct: 808 IAMINLDKALVDGQFKTKML---------------------------------------- 827

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGL 661
                       +        I+L V        P  +      ++   M S       +
Sbjct: 828 ------------LQVHDE---IILQV--------PKNELEAVKTLVKETMESAID--LSV 862

Query: 662 PLKAE 666
           PL A+
Sbjct: 863 PLIAD 867


>gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
 gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6]
          Length = 894

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 92/649 (14%), Positives = 182/649 (28%), Gaps = 134/649 (20%)

Query: 42  VELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
               D        +  L   L + +   V H        L     L++       T +  
Sbjct: 358 AVYLDLTALDADTENALATWLRDPESPKVLHGFKAALKALT-ARGLELE-GVVDDTSISG 415

Query: 101 RSNGL---PSALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                      L  + +      + +   + G+  ++             +         
Sbjct: 416 YLIQPDRRTYELAELAQHHLNVGMPAATAKAGQLELSFDGNDTAAAEALVQAAAVVSALS 475

Query: 155 RLF----GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
           R F     E    ++  T E+             +  +   +   G  +D+         
Sbjct: 476 RFFETELKERRAEELLSTLEL------------PVSRVLADMELAGIGIDLDRMDEQLAD 523

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN- 266
           +     +  ++  +     V +    ++L+T LF E  L      ++   T    L +  
Sbjct: 524 LARVIDQAQEQAFAAIGHEV-NLGSPKQLQTVLFEELQLPKTKKIKSGYTTDAASLKNLL 582

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           +K   + +        A++     + +L +++  DGR+  T     A+ TGR S      
Sbjct: 583 EKTGHEFLVQLMAHREAAKLR-QMIESLKKSVAEDGRIHTTYAQNVAA-TGRISSNNPNL 640

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIE 385
           QN+P  S                              VR   + S+G + L+ AD + IE
Sbjct: 641 QNIPIRSEEGRR-------------------------VRGIFVVSDGYECLLSADYSQIE 675

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++A ++G+   ++A++ GEDL+    +  F+V   QVT   R+  K M   L Y    
Sbjct: 676 MRIMAHLSGDAGLIQAYKDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYG--- 732

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                   +  L ++            + +    ++ R + +                  
Sbjct: 733 --LTSFGLSKQLEISVDEARTLMKDYFDRFGAVRDYLRGVVDQARVDGYTSTI------- 783

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                                               +RR +P +     +          
Sbjct: 784 ----------------------------------EGRRRYLPDLTSTDRQ---------- 799

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV 625
                  +  N     +    + R     G   E   Q      L   M+          
Sbjct: 800 LRENAERIALNSPIQGSAADIIKRAML--GVHAELQAQG-----LKSRML---------- 842

Query: 626 LTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           L VHDE+V E    +      L    M +       +PL+ +      +
Sbjct: 843 LQVHDELVLEVAPGERAAVEALVTEQMAAAAD--LSVPLEVQIGVGPSW 889


>gi|297282109|ref|XP_002802209.1| PREDICTED: DNA polymerase nu-like [Macaca mulatta]
          Length = 1484

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 91/645 (14%), Positives = 182/645 (28%), Gaps = 143/645 (22%)

Query: 67   TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117
             ++  N+  F R VL   F  D               + A          + + + E   
Sbjct: 917  PVICFNAKDFVRIVL-QFFGNDGSWKHVADFVGLDPRIAAWLIDPSDAVPSFEDLVEKY- 974

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               +K    K                 R+         L   Y +  + +  ++ +    
Sbjct: 975  --CEKSITVKVNSTYENSSRNIVNQNVRD--------NLKILY-RLTMDLCSKLKEYGLW 1023

Query: 178  LSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
                  E+    +   +      V+      ++ ++     KL+QE   +          
Sbjct: 1024 QLFCTLEVPLIPILAVMESHAIQVNKEEMEKISALLGARLKKLEQEAHFVAG-ERFLIMS 1082

Query: 236  LEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
              +L+  LF +  L             L +  +T + VL++ + L P    +   R    
Sbjct: 1083 SNQLREILFGKLKLHLLSRRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQ-VH 1141

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
            +     ++ L+ A    G +  T    G + TGR S      Q + +      +      
Sbjct: 1142 KIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITKPKNFKG 1199

Query: 345  HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                 +T  P          R+  ++S+G   + AD + IE R+LA ++G+   LK F+ 
Sbjct: 1200 KEDEILTISP----------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQE 1249

Query: 405  --GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
               +D++ T  ++  +V    VT   R   K +  A+ Y                     
Sbjct: 1250 SERDDVFSTLTSQWKDVPMEHVTHADREQTKRVVYAVVY--------------------- 1288

Query: 463  AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                          A           +  +++ QK+ ++ +   
Sbjct: 1289 -----------------------GAGKERLAACLGVPVQEAAQFLESFLQKYKKIKDF-- 1323

Query: 523  ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                A  Q    G  +                          GR      +    ++   
Sbjct: 1324 -ARAAIAQCHRTGYVVSI-----------------------MGRRRPLPRIH---AHDQQ 1356

Query: 583  TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIVCE 635
               Q  R+          +VQ  + D+    M+               +V  +HDE++ E
Sbjct: 1357 LRAQAERQA------VNFVVQGSAADLCKLAMIRVFTAVATSRTLTARLVAQIHDELLFE 1410

Query: 636  TPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674
              D      A+++   M              +PLK      + + 
Sbjct: 1411 VEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWG 1455


>gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
 gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779]
          Length = 889

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/666 (15%), Positives = 190/666 (28%), Gaps = 146/666 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83
            +I FA+   D             + Q   LKE LE      V     ++     VL   
Sbjct: 345 DLIGFAWSCGDK----LYATDKLELLQDPILKEFLE-KTPLKV-----YDFKKAKVLLNR 394

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALK--AVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           F LD+       + +           +   +      +    +E       + KG     
Sbjct: 395 FGLDLQ-APAFDSRLAKYLLSTVENNEISTIANLYGQTYLVDDE-----TFYGKGVKKAI 448

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDR 195
                   H              V     + ++L            EQ L  +   +   
Sbjct: 449 PERETFLEHLVRKVAVL------VETEPVLLEKLSENGQLDLLYDMEQPLALVLAKMEIA 502

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--ED 253
           G  V       +    ++   KL QE+  L      +    ++L   LF + GL +    
Sbjct: 503 GIKVKKETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGELLFEKLGLPIEYTK 561

Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+   +T   VL     + P   ++ + R   ++     +  L + + +DG++      
Sbjct: 562 KTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQ 620

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              ++TGR S      QN+P                                 +R   + 
Sbjct: 621 D-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVP 654

Query: 371 S-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQ 428
             E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + 
Sbjct: 655 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPND 714

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +   + Y            +  L ++        ++  E +   +N+   +   
Sbjct: 715 RRNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 769

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
             +    +       E      R  +  +        +    +   G A    K   +  
Sbjct: 770 ARDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMI-- 822

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                    L   L +GR          ++ +                            
Sbjct: 823 --------QLDKALVAGRY---------QTKM---------------------------- 837

Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEG 667
                ++        IVL        E P ++  +   L    M         +PL A+ 
Sbjct: 838 -----LLQVHDE---IVL--------EVPKSELASIKKLVKQTMEEAIQ--LSVPLIADE 879

Query: 668 YESKRY 673
            E   +
Sbjct: 880 NEGVTW 885


>gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 893

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/686 (14%), Positives = 189/686 (27%), Gaps = 149/686 (21%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70
           RS   +   G+ +      + L A       V            +VL   L  ++  +V 
Sbjct: 330 RSAERIAVAGVFEGTAPF-LNLVALALSYGDVRGVLHASSAHFAEVL-SIL--SERPVVL 385

Query: 71  HNSYFERTVLKACFNLDIPIH-RWICTLVLARSNGLP---SALKAVGEAL--KLSSQKME 124
            ++              + +        +            +L     A   +LS+ +  
Sbjct: 386 WDAK-------RYAQAGVTLGTEVFDFALADYLLRPEERQRSLDRAASAYLDELSAPQTA 438

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC-----KGDVTVTREIFKRLEPLS 179
           E + L A +        L++     +         Y        D  +T +++       
Sbjct: 439 EDRTLSAAYAHLANGAPLHNEQTAFYEVILA-ARLYAPTSAALADAKLT-KLYG------ 490

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   +   G  V+ A         +    +++Q++ +L      +    ++L
Sbjct: 491 EIELPLVPILAAMERTGVAVNRAALVRALAAANERIAEIEQDIYALAGT-EFNISSPKQL 549

Query: 240 KTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              LF   GL    + +     +T   VL   +   P   +V   R   S+     L  +
Sbjct: 550 GEVLFDRLGLTSPKMKKTKTGYSTNAEVLEEMRAAHPVVDRVLTYR-MWSKIRSTYLEGI 608

Query: 295 VEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
              +  D GR+  +      + TGR S      QN+P  +                    
Sbjct: 609 GALIRPDTGRVHTSFNQ-TVTATGRLSSSDPNLQNIPVRTEEGRA--------------- 652

Query: 354 PDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     VR+     EG   L+ AD + IE R+LA M+G++  + AF  G+D++  T
Sbjct: 653 ----------VRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHART 702

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +  F V  A+VT  QR   K +   + Y            +  L +             
Sbjct: 703 ASEVFGVPLAEVTSAQRRSAKAVNFGIVYG-----LSDYGLSQDLGIPRKEAAGYIERYF 757

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV--SELWNE--LHQAF 528
           E +     F   +  +   +       G          R+    +            +  
Sbjct: 758 ERYHGVRAFLDRVVADAHTNGFVTTLYGR---------RRALPAINSRNFMQRSNAERMA 808

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
             T   G A    K   +      +       +L                          
Sbjct: 809 MNTPIQGTAADLIKIAMIRADAALRAAGVKSRIL-------------------------- 842

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SML 647
                                     +        +VL    E+V    + +      +L
Sbjct: 843 --------------------------LQVHDE---LVL----EVV----NDEIAQVTELL 865

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673
              M+     A  +PL  + +  K +
Sbjct: 866 TAAMSGAAQLA--VPLAVDVHTGKNW 889


>gi|291412349|ref|XP_002722448.1| PREDICTED: DNA-directed DNA polymerase nu [Oryctolagus cuniculus]
          Length = 858

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/641 (15%), Positives = 186/641 (29%), Gaps = 132/641 (20%)

Query: 65  DVTIVAHNSY-FERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            + +V  N+  F RTVL+   + D    +     +   + A           +     ++
Sbjct: 302 KLPVVCFNAKDFVRTVLQFLGDADSWKHVADFVGLDPRIAAWLIDPRD--ATLSFEHLVA 359

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC-KGDVTVTREIFKRLEPL 178
               +     ++      +   +      N R   RL    C K       ++F  LE  
Sbjct: 360 KYLEKSTTVKVSSTYGNASRNIVNQNVHMNLRILHRLMMTLCSKLKAYSLWQLFWTLE-- 417

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
                 L  +   +      V+       + ++     +L+QE   +            +
Sbjct: 418 ----LPLIPILAVMERHSVQVNKEEMERTSALLGARLKELEQEAHFVAG-ERFLITSNNQ 472

Query: 239 LKTWLFLETGL------HLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           L+  LF +  L       L         +T + VL++ + L P    +   R    +   
Sbjct: 473 LREILFDKLKLHLLSQRRLPKTGLQKYPSTSEAVLNALQDLHPLPKIILEYRQ-VHKIKS 531

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             ++ L+ A   +G +  T    G + TGR S      Q + R      +          
Sbjct: 532 TFVDGLL-ACMREGSISSTWNQTG-TVTGRLSAKHPNIQGISRHPIHITKPQNTKGKEDE 589

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET--GE 406
            +T  P          R+  ++S G   + AD + IE R+LA ++G+   LK F     E
Sbjct: 590 ILTISP----------RAMFVSSAGHTFLAADFSQIELRILAHLSGDAELLKLFHESERE 639

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           D++ T  ++  N+    VT   R   K +  ++ Y                         
Sbjct: 640 DVFSTLTSQWKNMPVEHVTHVDREQTKKVVYSVVYG------------------------ 675

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                                     A           R  + + QK+ ++S+       
Sbjct: 676 --------------------AGKERLAACLGVAVPEAARFLETFLQKYKKISDF---AQA 712

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
           A  Q  + G                            +GR      +     +L     Q
Sbjct: 713 AIAQCHQRGYVTSV-----------------------TGRRRPLPRICAQEPHLR---AQ 746

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPDT 639
             R+          +VQ  + D+    M+    A          +V  +HDE++ E  D 
Sbjct: 747 AERQA------VNFVVQGSAADLCKMAMIRIFAAVSSSPTLTARLVAQIHDELLFEVEDA 800

Query: 640 DEFNASMLYH-LMTS-----NPSWAKGLPLKAEGYESKRYR 674
                + L    M S            +PLK      + + 
Sbjct: 801 QIPEFAALVRGTMESLQQVPALELQLQVPLKVSLSVGRSWG 841


>gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
 gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           15912]
          Length = 881

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 98/661 (14%), Positives = 184/661 (27%), Gaps = 138/661 (20%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNL 86
           +I FA+G               +   + KE LE      V     ++     VL +   +
Sbjct: 338 IIGFAWGTKGQ--LYASTDTGLLQTPIFKEFLE-KTPLKV-----YDFKRAKVLLSHLGI 389

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +  +    + +                        +      IA       +     R 
Sbjct: 390 TLQ-NPAFDSRLAKYLL---------STVEDNEISTIASLYSQIALPLDEVVYGKGVKRA 439

Query: 147 KPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLDQTINDRGYCVD 200
            P                +          +   +L+ L   EQ L  +   +   G  V+
Sbjct: 440 IPERAVLLEHLALKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKMEIAGIKVE 499

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    +V   +L QE+  L      +    ++L   LF +  L L     T+  
Sbjct: 500 RQTLEDMQVENEVVLERLTQEIYELAG-EEFNINSPKQLGVILFEKLELPLEYTKKTKTG 558

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++   R   ++     +  L + +  DG++         ++
Sbjct: 559 YSTAVDVLERLAPIAPIVSKILEYRQ-IAKIQSTYVIGLQDWILEDGKIHTRYVQD-LTQ 616

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK- 374
           TGR S      QN+P                                 +R   +  E   
Sbjct: 617 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEEENS 651

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433
            L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R FN+  P  VT + R   K
Sbjct: 652 VLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDRRNAK 711

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y            +  L ++         +  E +   +++   +     +  
Sbjct: 712 AVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKG 766

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
             +       E        ++  V        +    +   G A    K   + L     
Sbjct: 767 YVETLFKRRRE--IPDINSRNFNVRGF---AERTAINSPIQGSAADILKIAMIHLD---- 817

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                                           Q      Y  K+                
Sbjct: 818 --------------------------------QALEAGAYKTKM---------------- 829

Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
           ++        IVL V        P  +      L    M S    A  +PL+A+  E K 
Sbjct: 830 LLQVHDE---IVLQV--------PSDELAAIKELVKETMESAIELA--VPLEADENEGKT 876

Query: 673 Y 673
           +
Sbjct: 877 W 877


>gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963]
          Length = 915

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 101/664 (15%), Positives = 184/664 (27%), Gaps = 134/664 (20%)

Query: 28  VCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
             V   A    D            P     L + L +       H + +    L      
Sbjct: 363 GDVTALAIAASDGECAYIAASTATPEDEAALGDWLADASQPKALHEAKWAIHAL-RGRGW 421

Query: 87  DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142
            +       T + A           L  +    LK   +    G+E ++     E     
Sbjct: 422 TL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTE----- 475

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLSSKEQELWYL--DQTINDRGYC 198
                        +       D+      E+          + EL        I   G  
Sbjct: 476 ---QLDAEAAETAMLSAQAVLDLAAALGTELESIESKSLLSDMELPLTIELAQIEATGIV 532

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-- 256
           VD A  H L      +          +    + +    ++L+  LF E  +     T+  
Sbjct: 533 VDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTKTG 591

Query: 257 -TTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
            +T    L         P    +  +R  A+R  V  ++ L++A+  DGR+  T     A
Sbjct: 592 YSTDAEALQGLFDKTGHPFLEHLLAHR-DATRMKVT-VDGLLKAVAEDGRIHTTFNQTVA 649

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR S      QN+P  + +  E                         +R   +  +G
Sbjct: 650 A-TGRLSSTDPNLQNIPVRNDAGRE-------------------------IRDGFVVGQG 683

Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+ AD + IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT + R   
Sbjct: 684 FDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRV 743

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K M   L Y             + L ++T     + ++    +    ++   + E   + 
Sbjct: 744 KAMSYGLAYG-----LSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKD 798

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                                                            +RR +P +   
Sbjct: 799 GYTSTLY-----------------------------------------GRRRYLPDLNSD 817

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD-ILA 611
             +          R  V      N     T    +        K           D  L 
Sbjct: 818 NRQ----------RREVAERAALNAPIQGTAADIIKVAMINVQKAL--------ADAGLK 859

Query: 612 EGM-MNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669
             M +        +VL        E   ++     +++   M +       +PL      
Sbjct: 860 SRMLLQVHDE---LVL--------EVVASELEEVTALVKDKMATAIE--LSVPLDVSVGT 906

Query: 670 SKRY 673
            + +
Sbjct: 907 GRSW 910


>gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 585

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 109/717 (15%), Positives = 206/717 (28%), Gaps = 203/717 (28%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
           FID ET                   + LF  G +  P+ + D +     P+++K+ +   
Sbjct: 26  FIDTETTPK---------------DIRLFQVGLESGPIYVIDFLFVKRAPELIKDIIAKK 70

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
            V    HN  ++   L      DI  +    T+V A+  GL     ++       + +  
Sbjct: 71  GVA--GHNLKYDLKYLMKY---DIHPYTTFDTMVGAQLIGLNRV--SLASVYNHFTGESI 123

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           + KE  + +   E                      Y   DV V R ++++L+   +KE  
Sbjct: 124 DKKEQFSNWSSKELT---------------ESQIFYAAKDVEVLRLLYEKLKNELNKEPT 168

Query: 185 LWYLDQT--------------------------INDRGYCVDVALAHTLNQIVDVERTKL 218
           +  + Q                           I   G  +D     T+ + +  +  +L
Sbjct: 169 IIEILQKSRVAKVFGLESTYAIIEMGFVQELAKIEHTGIGIDTKEIETMKKQLQKKTQEL 228

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVL-SSNKKLTPQAI 274
                      +      +K+  +L     + L    +    T   VL         +A 
Sbjct: 229 AMNFYIKYRIDI---SSPKKVGEFLENHLNISLPRTDKDNIITDDSVLIEHLDYENEKAK 285

Query: 275 QVFN---NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            V +      +  +    KL+ ++E  N + R+      +GA  TGR S      QN+PR
Sbjct: 286 DVISSVLEFRKLHKLQ-EKLSEILEY-NENNRIHPEFWQIGA-VTGRMSSSRPNVQNIPR 342

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                                           +RS + A +G   V+AD + IE R+ A 
Sbjct: 343 -------------------------------ELRSILKAKDGYVFVIADFSQIELRIAAE 371

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
              ++  +     GEDL+  T +     +   +TK++R   K     L Y    K+    
Sbjct: 372 YVKDEVMIDIINKGEDLHKFTASLITGKSLEDITKEERQRAKAANFGLIYGISEKSLSLY 431

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
           A                                       ++          +R ++ + 
Sbjct: 432 AR--------------------------------------NSYGIDMSIEEAKRFREVFF 453

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                +      + +  +   E                                  +  +
Sbjct: 454 STFQGIKAWHERIKKELKAKGE----------------------------------IRLK 479

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-----------NATKA 620
            +G       T T                 +Q    ++L   ++           +    
Sbjct: 480 TIGGKPMIAYTFT-----------DAANYPIQGTGAELLKLSVLIFSQELKRAFPSIFHE 528

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAK-GLPLKAEGYESKRYRK 675
             ++V  VHDEIV E  +  +   S L    M    S     + ++ E   + R+ K
Sbjct: 529 VANVVNLVHDEIVVEAKEDYKEEVSKLLEKSMKKAGSILLNNVKIETEIVINHRWTK 585


>gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2]
 gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2]
          Length = 604

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 109/674 (16%), Positives = 211/674 (31%), Gaps = 157/674 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET         G+  Y++D    L  FG  +    +      P   +  ++AL N
Sbjct: 38  LGLDTETT--------GLDIYSDDFRCRLVQFGTPN-EAWVIPVELGPRYEEEARQALRN 88

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAVG 113
                V HN+ ++  V++    + +     +   T +LA                L+ + 
Sbjct: 89  VK-GFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVDPRPFKEGGIGHKLEELV 147

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +   + +   E  K L+A   +       +   K      +  +  Y   D  +   + +
Sbjct: 148 KHY-IDANVAENVKTLMATLAREYKTTKAHIWTKVELTNPY--YQLYSGMDPILAARLLQ 204

Query: 174 RLEPLSS--------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +L PL           E +L  +   +  RG+ +DV  +  L++ +  ++     + + L
Sbjct: 205 KLIPLVPAVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKADIL 264

Query: 226 TYGLVSSSRCLEKLKTWLFL---ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
               + +     ++   L     +     E       + +L    K      +      +
Sbjct: 265 YG--LENVNSPIQVAEALMRRGVKIKERTETGQPKVDKVLLDRLIKEGDPLAEAITEAKK 322

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +     +   +++ +S  R    +  L A RT R S    P Q LP            
Sbjct: 323 WGKWEKTWVRKFLDSRDSKDRCHANINPLQA-RTARMSITGIPAQTLPSGD--------- 372

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                VR C +A EG+ +   D    E RVLA ++G++  ++AF
Sbjct: 373 -------------------WLVRRCFLADEGQLMASVDYQAQELRVLAALSGDRTMIQAF 413

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           + G DL++                   A                                
Sbjct: 414 KDGADLHL-----------------MTARAAWP--------------------------- 429

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +  +S   ++    NF R         A +      A ++V   + + +  V  L  
Sbjct: 430 DREITKDSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQRLSA 489

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           +L +                              N  ++ P GR L    V  +R+Y   
Sbjct: 490 KLQREA--------------------------SQNGHIVTPKGRRLP---VDPSRAY--- 517

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDTD 640
                             ++Q+ SRD+  E ++   +AG+   + L +HDEI+   P+  
Sbjct: 518 -------------SALNYLIQSTSRDVTGEALIRLHEAGFTKYLRLPIHDEILASVPEDK 564

Query: 641 EFN-ASMLYHLMTS 653
               A  +  LM  
Sbjct: 565 AQWGAQEIARLMAE 578


>gi|301762338|ref|XP_002916602.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Ailuropoda
           melanoleuca]
          Length = 1040

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 97/618 (15%), Positives = 176/618 (28%), Gaps = 136/618 (22%)

Query: 67  TIVAHNSY-FERTVLKACFNLDIPIHRWI-----CTLVLARSNGL----PSALKAVGEAL 116
            ++  N+  F RTVL   F  D      +        + A         PS    V + L
Sbjct: 308 PVICFNAKDFVRTVL-QFFGHDGSWKHVVHFVGLDPRIAAWLIDPGDAAPSFEDLVAKYL 366

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     +  I+            +    N R   ++        +    +++   +
Sbjct: 367 ----------ESSISVKVNSTYGNSSRNVVNQNVRVNLKILYR-LTMGLCSQLKVYGLWQ 415

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
              + E  L  +   +      VD       + ++     +L+QE   +           
Sbjct: 416 LFCTLELPLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAHFVAG-EQFLITSN 474

Query: 237 EKLKTWLFLETGLHL-------EDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
            +L+  LF +  L L                +T + VL + + L P    +   R    +
Sbjct: 475 NQLREVLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEYRR-VHK 533

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
           +    ++ L+ A    G +  T    G + TGR S      Q + +      +       
Sbjct: 534 TKSAFVDGLL-ACMRKGSISSTWNQTG-TVTGRLSARHPNIQGISKHPIQITKPQNFKGV 591

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET- 404
               +T  P          RS  +A EG   + AD + IE R+LA ++G+   LK F+  
Sbjct: 592 EGAMLTISP----------RSMFVAPEGHTFLAADFSQIELRILAHLSGDPELLKLFQES 641

Query: 405 -GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
             +D++ T  ++   V P  VT   R   K +  +  Y                      
Sbjct: 642 ERDDVFSTLTSQWKGVPPEHVTHADREQTKKVVYSAVY---------------------- 679

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                                        A              +++ QK+ +V +    
Sbjct: 680 ----------------------GAGKERLAACLGVTVQEAAWFLESFLQKYKKVKDF--- 714

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           +     Q  + G                             GR      V   R+     
Sbjct: 715 VQTTIAQCHQTGYVASI-----------------------MGRRRPLPRV---RAQDQQL 748

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCET 636
             Q  R+          +VQ  + D+    M+    A          +V  +HDE++ E 
Sbjct: 749 RAQAERQA------VNFVVQGSAADLCKMAMIRVFAAVAASPTLTARLVAQIHDELLFEV 802

Query: 637 PDTDEFNASMLYH-LMTS 653
            D+     + L    M S
Sbjct: 803 DDSQIPELAALVRGTMES 820


>gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
 gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989]
          Length = 858

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 102/691 (14%), Positives = 192/691 (27%), Gaps = 161/691 (23%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            D E    + L  C    Y +   +  F     D  +      +          ALE+T+
Sbjct: 302 FDIE--DLMVLPVCTQQPYLDQ-QLYGFMIP-KDKTIYYISVEN----------ALEDTN 347

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--------LPSALKAVGEALK 117
              +                L+        T  +                 L   G  L 
Sbjct: 348 FKKI----------------LETKEISTWDTKEMMHLLDRYGFKWNTFNDDLHIAGFLLN 391

Query: 118 -LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             ++      + L     +         + +P           +      +T++++++  
Sbjct: 392 STATDSDAVLEALHITLPESFHDVSKKTKEEPAFSLNREQALCHS-----LTQQLYEKKG 446

Query: 177 PLS-------------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            +                E  L  +  ++   G  +  +       +++ +   L Q++ 
Sbjct: 447 EILQSLKEENVLSLYREIEMPLTRVLFSMEQEGISIQESFLDEYGALLNEKLETLAQQIY 506

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
           S     + +    ++L   LF E  L       +T   VL   +   P    +   R + 
Sbjct: 507 SHAGM-IFNINSPKQLANVLFDELNLSSGGKKRSTSADVLEKLRGKHPIVDDILEYR-KI 564

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           S+ +   ++ L + + SD ++  +      ++TGR S      QN+       +E     
Sbjct: 565 SKVSSTYIDGLKKHIRSDQKIHTSFNQTM-TQTGRLSSSEPNLQNISIRDELGKE----- 618

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                               +R   +A EG  L+ AD + IE R+LA MA E   +KAF 
Sbjct: 619 --------------------IRKAFVAQEGYHLLSADYSQIELRMLAHMANEDHMIKAFN 658

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G D++  T    FN +P +V + +R I K +   + Y        +   ++ LN+    
Sbjct: 659 EGLDIHTKTATLIFNCSPEEVDEHKRRIAKTVNFGIVYGQT-----EFGLSSQLNITRKE 713

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                    E +     +   + +   E+   +       E        K+    E    
Sbjct: 714 AGEFMKMYFESYPKIHEYMNQLIDFCKENGYVETLFHRRRE--IPEINDKNFMTREFGK- 770

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +A       G A    K   + +    KD N    ML                     
Sbjct: 771 --RAAMNAPIQGSAADLIKIAMLKMDQALKDANVNSKML--------------------- 807

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
                                          +        +V           PD +   
Sbjct: 808 -------------------------------LQIHDELIFLV-----------PDEELDL 825

Query: 644 ASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              L    M S       +PLKA     K +
Sbjct: 826 MQKLVKETMESAME--LKVPLKASISVGKSW 854


>gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
 gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211]
          Length = 881

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 99/658 (15%), Positives = 192/658 (29%), Gaps = 130/658 (19%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKAC 83
            ++ FA+       +      D  + Q    KE L NT    V     ++     VL + 
Sbjct: 337 EMVGFAW----GNAQQIYASQDINLLQQPAFKEFLGNTA-LKV-----YDFKRSKVLLSR 386

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             +++       + +             +     L   K    ++ +      +      
Sbjct: 387 LGIELSQPS-FDSRLAKYLL-STVDNNEIATIANLYG-KTRLVEDEVVYGKGAKRALPEK 443

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
                +      +  E  K    + R+   +L  L   EQ L ++   +   G  V+   
Sbjct: 444 AILLSHLARKVTVLVETEKPMTDLLRQ-HDQLNLLYEMEQPLAFVLAKMEIAGIKVERET 502

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TT 258
             T+    +    +L QE+  L      +    ++L   LF + GL       T+   +T
Sbjct: 503 LQTMQTENEEVLARLTQEIYDLAG-EEFNINSPKQLGGILFEKLGLPTSFTKKTKTGYST 561

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL     + P   ++ + R   ++     +  L + + +DG++         ++TGR
Sbjct: 562 AVDVLERLAPIAPIVEKILDYRQ-IAKIQSTYVMGLQDWILADGKIHTRYLQD-LTQTGR 619

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377
            S      QN+P                                 +R   +   +   L+
Sbjct: 620 LSSVDPNLQNIPIRLEQGR-------------------------LIRKAFVPEWKDSVLL 654

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVME 436
            +D + IE RVLA ++G++  ++AF  G D++ +T  R F +  P  VT + R   K + 
Sbjct: 655 SSDYSQIELRVLAHISGDEHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVN 714

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y               L ++        ++  E +   +N+   +     +    +
Sbjct: 715 FGVVYGIS-----DFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVE 769

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  E        ++  V        +    +   G A    K   + L     D N
Sbjct: 770 TLFHRRRE--IPDINSRNFNVRGF---AERTAINSPIQGSAADILKIAMIRLDQALTDGN 824

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
               ML                                                    + 
Sbjct: 825 FKTRML----------------------------------------------------LQ 832

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  IVL V        P+ +      L   +M S       +PLKA+    K +
Sbjct: 833 VHDE---IVLEV--------PENELTAIKTLVKDIMESAIELV--VPLKADESAGKTW 877


>gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
 gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405]
          Length = 881

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 96/661 (14%), Positives = 184/661 (27%), Gaps = 138/661 (20%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFNL 86
           +I FA+G   H           +   + KE LE      V     ++     VL +   +
Sbjct: 338 IIGFAWGTKGH--LYASTDTGLLQTPIFKEFLE-KTPLKV-----YDFKRAKVLLSHLGI 389

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +  +    + +                        +      IA       +     + 
Sbjct: 390 TLQ-NPAFDSRLAKYLL---------STVEDNEISTIASLYSQIALPLDEVVYGKGAKKA 439

Query: 147 KPNHREAWRLFGEYCK--GDVT--VTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVD 200
            P                 D    +T ++    +       EQ L  +   +   G  V+
Sbjct: 440 IPEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKMEIAGIKVE 499

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-- 256
                 +    +    +L QE+  L      +    ++L   LF +  L L     T+  
Sbjct: 500 RQTLQDMQVENEAVLERLTQEIYELAG-EEFNINSPKQLGVILFEKLELPLEYTKKTKTG 558

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++   R   ++     +  L + +  DG++         ++
Sbjct: 559 YSTAVDVLERLAPIAPIVSKILEYRQ-IAKIQSTYVIGLQDWILEDGKIHTRYVQD-LTQ 616

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK- 374
           TGR S      QN+P                                 +R   +  E   
Sbjct: 617 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEEENS 651

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGK 433
            L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R FN+  P  VT + R   K
Sbjct: 652 VLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDRRNAK 711

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y            +  L ++         +  E +   +++   +     +  
Sbjct: 712 AVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKG 766

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
             +       E        ++  V        +    +   G A    K           
Sbjct: 767 YVETLFKRRRE--IPDINSRNFNVRGF---AERTAINSPIQGSAADILKI---------- 811

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                                     +    + L R   Y  K+                
Sbjct: 812 -------------------------AMIHLDQALERGA-YKTKM---------------- 829

Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
           ++        IVL V        P  +      L    M S       +PL+A+  E K 
Sbjct: 830 LLQVHDE---IVLQV--------PSDELAAIKELVKETMESAIELV--VPLEADENEGKT 876

Query: 673 Y 673
           +
Sbjct: 877 W 877


>gi|114592892|ref|XP_001147229.1| PREDICTED: polymerase (DNA directed) nu isoform 1 [Pan troglodytes]
          Length = 900

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 93/648 (14%), Positives = 184/648 (28%), Gaps = 149/648 (22%)

Query: 67  TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPSALKAVGEALKLSS 120
            ++  N+  F R VL   F  D               + A                    
Sbjct: 315 PVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPS-------------- 359

Query: 121 QKMEEGKELIARFCKGETHE------CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                 ++L+ ++C+               RN  N      L   Y +  + +  ++   
Sbjct: 360 DATPSFEDLVEKYCEKSLTVKVNSTYGNSSRNIVNQNVCENLKTLY-RLTMDLCSKLKDY 418

Query: 175 LEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    EL    +   +      V+       + ++     +L+QE   +       
Sbjct: 419 GLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERFL 477

Query: 233 SRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRM 281
                +L+  LF +  L             L +  +T + VL++ + L P    +   R 
Sbjct: 478 IMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQ 537

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     ++ L+ A    G +  T    G + TGR S      Q + +          
Sbjct: 538 -VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKN 594

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   +T  P          R+  ++S+G   + AD + IE R+LA ++G+   LK 
Sbjct: 595 FKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKL 644

Query: 402 FET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F+    +D++ T  ++  +V   QVT   R   K +  A+ Y                  
Sbjct: 645 FQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY------------------ 686

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A           +  +++ QK+ ++ +
Sbjct: 687 --------------------------GAGKERLAACLGVPVQEAAQFLESFLQKYKKIKD 720

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                  A  Q  + G  +                          GR      +    ++
Sbjct: 721 F---ARAAIAQCHQTGCVVSI-----------------------MGRRRPLPRIH---AH 751

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632
                 Q  R+          +VQ  + D+    M++              +V  +HDE+
Sbjct: 752 DQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDEL 805

Query: 633 VCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674
           + E  D      A+++   M              +PLK      + + 
Sbjct: 806 LFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWG 853


>gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
 gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249]
          Length = 889

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 100/667 (14%), Positives = 190/667 (28%), Gaps = 148/667 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83
            ++ FA+   D             + Q   LKE LE T    V     ++     VL   
Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQDPILKEFLEKTS-LKV-----YDFKKAKVLLNR 394

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALK--AVGEALK---LSSQKMEEGKELIARFCKGET 138
             L++       + +           +   +        L+  +   GK +     + E 
Sbjct: 395 LGLNLQ-APAFDSRLAKYLLSTVENNEISTIANLYGQTYLADDETFYGKGVKKAIPEREK 453

Query: 139 HECLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                 R                GE+ + D+     ++         EQ L ++   +  
Sbjct: 454 FLEHLARKVAVLVETEPVLLEKLGEHGQLDL-----LY-------DMEQPLAFVLAKMEI 501

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--E 252
            G  V       +    ++   KL QE+  L      +    ++L   LF + GL L   
Sbjct: 502 AGIKVKKETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYT 560

Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             T+   +T   VL     + P   ++ + R   ++     +  L + +  DG++     
Sbjct: 561 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVVGLQDWILDDGKIHTRYV 619

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               ++TGR S      QN+P                                 +R   +
Sbjct: 620 QD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFV 653

Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKD 427
              E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT +
Sbjct: 654 PEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPN 713

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K +   + Y            +  L ++        ++  E +   +N+   +  
Sbjct: 714 DRRNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVR 768

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
              +    +       E      R  +  +        +    +   G A    K   + 
Sbjct: 769 EARDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQ 823

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
           L     +      ML                                             
Sbjct: 824 LDKALVEGGYQTKML--------------------------------------------- 838

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
                  +        IVL V        P ++     +L    M         +PL A+
Sbjct: 839 -------LQVHDE---IVLEV--------PKSELAAVKVLVKQTMEEAIQ--LSVPLIAD 878

Query: 667 GYESKRY 673
             E   +
Sbjct: 879 ENEGATW 885


>gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
 gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus]
          Length = 886

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/662 (14%), Positives = 188/662 (28%), Gaps = 143/662 (21%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDI 88
           L  F + +            +  ++ K+ LE          + ++     VL +   LD+
Sbjct: 344 LIGFAWGNQGQIYASADISLLTTELFKKVLEQPI-------ATYDFKRSKVLLSHLGLDL 396

Query: 89  PIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           P   +    +             + L  +   + L + ++  GK +              
Sbjct: 397 PAASY-DARLANYLLSTVEDNEMATLARLYTTIPLDTDEVVYGKGVKRAVPDKAVLLGHL 455

Query: 144 DRN----KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
            R       +         E+ + D+                E  L  +   +   G  V
Sbjct: 456 ARKVQVLLDSRPVMLDKLAEHEQADLYT------------DIELPLANVLAKMEIEGIAV 503

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE- 256
           +      + +   V   +L QE+  +    V +    ++L   LF +  L L     T+ 
Sbjct: 504 NQDSLQEMAEQNKVVIEELTQEIYEMAG-EVFNINSPKQLGVILFEKMQLPLHLTKKTKT 562

Query: 257 --TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
             +T   VL     + P   ++ + R   ++     +  L + + +DGR+         +
Sbjct: 563 GYSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYIMADGRIHTRYLQD-LT 620

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EG 373
           +TGR S      QN+P                                 +R     S + 
Sbjct: 621 QTGRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHDD 655

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIG 432
             L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  VT + R   
Sbjct: 656 AVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNA 715

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y            +  L +         ++  E +   +++   +     + 
Sbjct: 716 KAVNFGIVYGIS-----DFGLSNNLGIPRKQAKAYIDTYFERYPGIKDYMERVVREAKDK 770

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
              +       +      RQ    V        +    +   G A    K   + L    
Sbjct: 771 GYVETLFKRRRQLPDINSRQ--FNVRSF---AERTAINSPIQGSAADILKIAMINLDQAL 825

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                   ML                                                  
Sbjct: 826 VAGGFETKML-------------------------------------------------- 835

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
             +        IVL V        P+ +      L    M S  + A  +PL+ +    K
Sbjct: 836 --LQVHDE---IVLEV--------PNHELAAVKELVKETMESAVNLA--VPLRVDESAGK 880

Query: 672 RY 673
            +
Sbjct: 881 SW 882


>gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 882

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 188/656 (28%), Gaps = 118/656 (17%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKACFNLD 87
            +   AF   D      D             A      +    H+       +       
Sbjct: 329 DLRAIAFATADGEGAYVDVTAMDQADDAALAAWLADPAIRKTGHDLKTPLHAI-RARGWV 387

Query: 88  IPIHRWICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +       T + A           L  +         + E               E L  
Sbjct: 388 LSGLAM-DTALAAYLVRPGQRTFELDDLALRYLHRELRSETDGGDGQLSLLDGGAEGLEQ 446

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           +   +     R   E     +    E     + L+  E  L  +   +   G  VD+   
Sbjct: 447 KEIQDELVKARAIFELAGA-LEKELEQIGGAKLLAELELPLLEVITELEIAGVAVDLEQL 505

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR 261
            TL        T+  +E  ++    + +    ++L+  LF E G+     T+T   T   
Sbjct: 506 TTLEAHYLSRVTQAAEEAYAVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDAE 564

Query: 262 VLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            L     K   P    +  +R  A++     +  L++++  DGR+  TL    A+ TGR 
Sbjct: 565 ALQGLFEKTEHPFLQHMLEHR-DATKLRTT-VEGLIKSVADDGRIHTTLLQTIAA-TGRL 621

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVV 378
           S      QN+P  +                              +R   +  EG   L+ 
Sbjct: 622 SSTEPNLQNIPVRTEEGRR-------------------------IRDAFVVGEGFTELMT 656

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD + IE R++A ++ ++  ++AF +GEDL+    +R+F++ P ++T + R   K M   
Sbjct: 657 ADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHTFVASRAFSMPPEEITPELRYRVKAMSYG 716

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           L Y            +  L ++T     +  +  + +    ++   +     ++   +  
Sbjct: 717 LAYG-----LSAYGLSQQLRISTEDAKSQMEAYFDRFGGVRDYLHSVVGVAAKNGYTETV 771

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
            G             +S   +      +        G A    K   + +          
Sbjct: 772 FGRRRYLP-----DLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVH--------- 817

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
                  R+LV   + +                                      ++   
Sbjct: 818 -------RALVEAKLKSRI------------------------------------LLQVH 834

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
                        +V E  + ++     L    M S   +A  +PL+      + +
Sbjct: 835 DE-----------LVLEVAEGEKEQLEQLVREGMGSA--YALAVPLEVSVGYGRSW 877


>gi|332818964|ref|XP_001147379.2| PREDICTED: DNA polymerase nu isoform 3 [Pan troglodytes]
          Length = 1502

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 93/648 (14%), Positives = 184/648 (28%), Gaps = 149/648 (22%)

Query: 67   TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPSALKAVGEALKLSS 120
             ++  N+  F R VL   F  D               + A                    
Sbjct: 917  PVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPS-------------- 961

Query: 121  QKMEEGKELIARFCKGETHE------CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                  ++L+ ++C+               RN  N      L   Y +  + +  ++   
Sbjct: 962  DATPSFEDLVEKYCEKSLTVKVNSTYGNSSRNIVNQNVCENLKTLY-RLTMDLCSKLKDY 1020

Query: 175  LEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                     EL    +   +      V+       + ++     +L+QE   +       
Sbjct: 1021 GLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERFL 1079

Query: 233  SRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNRM 281
                 +L+  LF +  L             L +  +T + VL++ + L P    +   R 
Sbjct: 1080 IMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQ 1139

Query: 282  RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
               +     ++ L+ A    G +  T    G + TGR S      Q + +          
Sbjct: 1140 -VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKN 1196

Query: 342  IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                    +T  P          R+  ++S+G   + AD + IE R+LA ++G+   LK 
Sbjct: 1197 FKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKL 1246

Query: 402  FET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            F+    +D++ T  ++  +V   QVT   R   K +  A+ Y                  
Sbjct: 1247 FQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY------------------ 1288

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                             A           +  +++ QK+ ++ +
Sbjct: 1289 --------------------------GAGKERLAACLGVPVQEAAQFLESFLQKYKKIKD 1322

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                   A  Q  + G  +                          GR      +    ++
Sbjct: 1323 F---ARAAIAQCHQTGCVVSI-----------------------MGRRRPLPRIH---AH 1353

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEI 632
                  Q  R+          +VQ  + D+    M++              +V  +HDE+
Sbjct: 1354 DQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDEL 1407

Query: 633  VCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674
            + E  D      A+++   M              +PLK      + + 
Sbjct: 1408 LFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWG 1455


>gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
 gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037]
          Length = 889

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 94/664 (14%), Positives = 178/664 (26%), Gaps = 142/664 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83
            ++ FA+   D             + Q    KE LE T    V     ++     VL   
Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQEPIFKEFLEKTS-LKV-----YDFKKAKVLLNR 394

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             L++       + +                        +               +    
Sbjct: 395 LGLNLQ-APAFDSRLAKYLL---------STVENNEISTIASLYSQTYLVDDETFYGKGV 444

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGY 197
            +  P   +            V     + ++L            EQ L ++   +   G 
Sbjct: 445 KKAIPEREKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGI 504

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLT 255
            V       +    +V   +L QE+  L      +    ++L   LF + GL L     T
Sbjct: 505 KVKKETLLEMQAENEVVIEQLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYTKKT 563

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL     + P   ++ + R   ++     +  L + +  DG++        
Sbjct: 564 KTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILDDGKIHTRYVQD- 621

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P                                 +R   +   
Sbjct: 622 LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEW 656

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 657 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 716

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y               L ++        ++  E +   +N+   +     
Sbjct: 717 NAKAVNFGVVYGIS-----DFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREAR 771

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           +    +       E      R  +  +        +    +   G A    K   + L  
Sbjct: 772 DKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDK 826

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
              +      ML                                                
Sbjct: 827 ALVEGGYQTKML------------------------------------------------ 838

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYE 669
               +        IVL V        P ++      L    M         +PL A+  E
Sbjct: 839 ----LQVHDE---IVLEV--------PKSELAAVKDLVKQTMEEAIQ--LSVPLIADENE 881

Query: 670 SKRY 673
              +
Sbjct: 882 GATW 885


>gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
 gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC
           903]
          Length = 881

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 101/666 (15%), Positives = 192/666 (28%), Gaps = 148/666 (22%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFE---RTVLKACF 84
           +I FA+G             D  + Q  + KE LE      V     ++     VL +  
Sbjct: 338 IIGFAWGTKGQ----LYASTDTALLQTPIFKEFLE-KTPLKV-----YDFKRAKVLLSHL 387

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           ++ +       + +                   +   ++     L ++            
Sbjct: 388 DITLQ-KPAFDSRLAKYLLS------------TVEDNEISTIASLYSQIALPLDEVVYGK 434

Query: 145 RNKPNHREAWRLFGEYCKGDVTV---------TREIFKRLEPLSSKEQELWYLDQTINDR 195
             K    E   L     +    +           +   +L+ L   EQ L  +   +   
Sbjct: 435 GAKKAIPEKTALLEHLARKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKMEIA 494

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--ED 253
           G  V+      +    +V   +L QE+  L      +    ++L   LF + GL L    
Sbjct: 495 GIKVERQTLEDMQVENEVVLERLTQEIYELAG-EEFNINSPKQLGVILFEKLGLPLEYTK 553

Query: 254 LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
            T+   +T   VL     + P   ++   R   ++     +  L + +  DG++      
Sbjct: 554 KTKTGYSTAVDVLERLAPIAPIVSKILEYRQ-IAKIQSTYVIGLQDWILEDGKIHTRYVQ 612

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
              ++TGR S      QN+P                                 +R   + 
Sbjct: 613 D-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVP 646

Query: 371 SEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQ 428
            E    L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R FN+  P  VT + 
Sbjct: 647 EEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPND 706

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K +   + Y            +  L ++         +  E +   +++   +   
Sbjct: 707 RRNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVRE 761

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
             +    +       E        ++  V        +    +   G A    K      
Sbjct: 762 ARDKGYVETLFKRRRE--IPDINSRNFNVRGF---AERTAINSPIQGSAADILKI----- 811

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                                          +    + L R   Y  K+           
Sbjct: 812 ------------------------------AMIHLDQALERGA-YKTKM----------- 829

Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
                ++        IVL V        P  +      L    M S    A  +PL+A+ 
Sbjct: 830 -----LLQVHDE---IVLQV--------PSDELAAIKELVKETMESAIELA--VPLEADE 871

Query: 668 YESKRY 673
            E K +
Sbjct: 872 NEGKTW 877


>gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 899

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 95/662 (14%), Positives = 188/662 (28%), Gaps = 143/662 (21%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDI 88
           L  F + +            +  ++ K+ LE          + ++     VL +   LD+
Sbjct: 357 LIGFAWGNQGQIYASADISLLTTELFKKVLEQPI-------ATYDFKRSKVLLSHLGLDL 409

Query: 89  PIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           P   +    +             + L  +   + L + ++  GK +              
Sbjct: 410 PAASY-DARLANYLLSTVEDNEMATLARLYTTIPLDTDEVVYGKGVKRAVPDKAVLLGHL 468

Query: 144 DRN----KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
            R       +         E+ + D+                E  L  +   +   G  V
Sbjct: 469 ARKVQVLLDSRPVMLDKLAEHEQADLYT------------DIELPLANVLAKMEIEGIAV 516

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE- 256
           +      + +   V   +L QE+  +    V +    ++L   LF +  L L     T+ 
Sbjct: 517 NQDSLQEMAEQNKVVIEELTQEIYEMAG-EVFNINSPKQLGVILFEKMQLPLHLTKKTKT 575

Query: 257 --TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
             +T   VL     + P   ++ + R   ++     +  L + + +DGR+         +
Sbjct: 576 GYSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYIMADGRIHTRYLQD-LT 633

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EG 373
           +TGR S      QN+P                                 +R     S + 
Sbjct: 634 QTGRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHDD 668

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIG 432
             L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  VT + R   
Sbjct: 669 AVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNA 728

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y            +  L +         ++  E +   + +   +     + 
Sbjct: 729 KAVNFGIVYGIS-----DFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDK 783

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
              +       +      RQ +     L +   +    +   G A    K   + L    
Sbjct: 784 GYVETLFKRRRQLPDINSRQFN-----LRSFAERTAINSPIQGSAADILKIAMINLDQAL 838

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                   ML                                                  
Sbjct: 839 VAGGFETKML-------------------------------------------------- 848

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESK 671
             +        IVL V        P  +      L    M S  + A  +PL+ +    K
Sbjct: 849 --LQVHDE---IVLEV--------PSHELAAVKELVKETMESAVNLA--VPLRVDESAGK 893

Query: 672 RY 673
            +
Sbjct: 894 SW 895


>gi|332701547|ref|ZP_08421635.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
 gi|332551696|gb|EGJ48740.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay]
          Length = 882

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 94/604 (15%), Positives = 167/604 (27%), Gaps = 139/604 (23%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI-ARFC 134
           +   L        P+ RW    + A             E      Q++ +   L      
Sbjct: 408 DWACL--------PLDRWFDLGLAAYLLNP--------EERSYDWQRLRDSLALDPDAEA 451

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                  L  +    H    +           + R++          E  L  +   +  
Sbjct: 452 VHPQANGLAAKAL--HDVLAKRLA--AANLTELLRDL----------EMPLVPVLVAMEQ 497

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  +D A   +    V+ +  +L   + ++      + R  ++L   LF   GL  +  
Sbjct: 498 AGIAIDKAAFESFLSEVNAQIGELTSRIHAVAEMP-FNIRSNQQLAQLLFDRLGLKAKGK 556

Query: 255 TE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
           T     +T   VL   +   P    +   R    +     L  L +  +  GR+  T   
Sbjct: 557 TPGGAQSTANPVLEKLRNEHPVVADILEFR-MLEKLRSTYLEPLPKLADEQGRIHTTFNQ 615

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
           L A+ TGR S      QN+P                                 +R+C  A
Sbjct: 616 L-ATATGRLSSSAPNLQNIPIRGPQGTR-------------------------MRACFTA 649

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
             G  L  AD + IE RVLA M+ +   L+AF  G+D++  T    F+    QV  D+R 
Sbjct: 650 GPGCLLAAADYSQIELRVLAHMSQDPTLLEAFRHGQDIHARTAGLIFDKDAGQVAPDERR 709

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   L Y  G +          L +                   + F   + +   
Sbjct: 710 SAKTINFGLLYGMGPQKLAAE-----LGIALAQAKEFIERYFVGLSKLKEFYDSIVKEAE 764

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           ++      +G    R+      ++  +        QA  Q I                  
Sbjct: 765 QNGSVVTMLGR--RRLLPDIHSRNDNLKA------QAVRQAINTRI-------------- 802

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
             +     I+ L   R                      +    GG+L             
Sbjct: 803 --QGSAADIIKLAMIR-----------------AHADEKIRALGGRLI------------ 831

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669
               +                ++ ETP+     A + +  +M         +PL  +   
Sbjct: 832 ----LQVHDE-----------LLLETPEATAQEAGARMKEIMAGIVE--LSVPLVVDMGV 874

Query: 670 SKRY 673
            + +
Sbjct: 875 GRNW 878


>gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
 gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162]
          Length = 917

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 97/659 (14%), Positives = 187/659 (28%), Gaps = 136/659 (20%)

Query: 35  FGFDDHPVELWDC----VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
               D             HD      L   L +       H + +    L++    ++  
Sbjct: 370 IAAPDDEGGYIALETLTPHDE---AALGAWLADATRPKAVHEAKWAMHGLESR-GWEL-G 424

Query: 91  HRWICTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                T + A           L  +         +       +      +T   L D   
Sbjct: 425 GLTSDTAIAAYLVRPGQRSFNLDDLSVRYLHRELR-------VESAAGDDTQLSLLDDPD 477

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCVDV 201
            +  E  +      +  V +   + + LE +         E  L  +   +   G  VD 
Sbjct: 478 DSAAEKAQQQILRARAVVDLAAALDEELEKIESKPLLEEMELPLLRVLGVMEATGIAVDT 537

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT--- 258
               +L+          +          + +    ++L+  LF + GL     T+T    
Sbjct: 538 DHLESLHSDFSDRIRAAEAAAFEEIGEQI-NLGSPKQLQVILFEKLGLPKTKKTKTGYTT 596

Query: 259 CQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
               L +   K+  P    +  +R  A+R  V  +  L++A+ SDGR+  T     A+ T
Sbjct: 597 DAAALEALYEKEPHPFLQYLLEHR-DATRLKVT-VEGLLKAVASDGRIHSTFNQTVAA-T 653

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-K 375
           GR S      QN+P  + +                            +R   +A EG   
Sbjct: 654 GRLSSTDPNLQNIPVRTEAGR-------------------------QIRHAFVAGEGYET 688

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++ ++  ++AF TGEDL+    A++F V   +VT D R   K M
Sbjct: 689 LMTADYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFVGAKAFGVPIDEVTPDMRRRVKAM 748

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              L Y               L ++      +  +    +    ++ + +      +   
Sbjct: 749 SYGLAYG-----LSAFGLAAQLKISRDEAKDQMEAYFARFGGVRDYLQDVVTEATRNEYT 803

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           +                                             +RR +P +      
Sbjct: 804 ETIF-----------------------------------------GRRRYLPDLTSTNRM 822

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                     R      +  N     +    +        K         +  + +  ++
Sbjct: 823 ----------RRESAERMALNAPIQGSAADIIKVAMINLDKQIR------AAGLTSRMLL 866

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                        HDE+V E    +      L    M +       +PL+      + +
Sbjct: 867 QV-----------HDELVLEVAAGERDELEKLVRDTMGTAAE--LSVPLEVSVGYGRSW 912


>gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
 gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415]
          Length = 886

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 94/666 (14%), Positives = 185/666 (27%), Gaps = 153/666 (22%)

Query: 33  FAFGFDDHPVELW----DCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFN 85
            AF + +          D + D +  + L      +          ++     VL +   
Sbjct: 345 LAFSWGNKEAIYVSKNLDLLKDRLFVEAL------SKPIKT-----YDFKRSKVLLSHLG 393

Query: 86  LDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           +++P      + +          + L  +      +               K        
Sbjct: 394 IELPTAD-FDSRLAKYLLSTVEDNELSTIASLYGQTP------------LAKDVEVYGKG 440

Query: 144 -DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRG 196
             +  P  +  ++      +  V     + ++L            E  L  +   +   G
Sbjct: 441 AKKAVPEDQVLFQHLATKLQVLVETEPVLKEKLAEHGQSDLLFDMELPLANVLAKMEITG 500

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDL 254
             V+      +     V    L QE+  +      +    ++L T LF E GL       
Sbjct: 501 IKVNRQTLKDMEVENQVTLDALTQEIYDMAGQ-EFNINSPKQLGTILFEEMGLPTSMTKK 559

Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+   +T   VL       P   ++   R   ++     +  L + +  DG++       
Sbjct: 560 TKTGYSTAVDVLERLAPHAPIVAKILEYRQ-IAKLQSTYVVGLQDFILDDGKIHTRYLQD 618

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             ++TGR S      QN+P                                 +R      
Sbjct: 619 -LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFTPE 652

Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQR 429
            E   L+ +D + IE RVLA ++G++  + AF+ GED++  T  R FN+A P  VT + R
Sbjct: 653 WEDSVLLSSDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDR 712

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y            +  L ++  A      +  E +   +++   +    
Sbjct: 713 RNAKAVNFGVVYGIS-----DYGLSQNLGISRKAAKNYIATYFERFPGIKDYMERVVREA 767

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            +    +              R+    ++     +                         
Sbjct: 768 KDKGYVETLFKR---------RRTLPDINSRNFNIRNFA--------------------- 797

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                                      R+ +N+  +              N+ QA+    
Sbjct: 798 --------------------------ERTAINSPIQGS--AADILKIAMINLDQALEAGS 829

Query: 610 LAEGM-MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
               M +        IVL        E P+ +      L    M S    A  +PL A+ 
Sbjct: 830 FKTKMLLQVHDE---IVL--------EVPNAELSAIKKLVKKTMESAIVLA--VPLLADE 876

Query: 668 YESKRY 673
              K +
Sbjct: 877 NSGKTW 882


>gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches]
 gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches]
          Length = 608

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 106/676 (15%), Positives = 194/676 (28%), Gaps = 157/676 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET         G+  Y +     L  FG       +            +K ALE 
Sbjct: 38  LGLDSETT--------GLDIYNDGFRCRLVQFGT-PSEAWVVPVERGGPYAGDVKRALEM 88

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAVG 113
                V HN+ ++  V +    + +     +   T +LA               +L+ + 
Sbjct: 89  VQ-GFVLHNAAYDLQVFERTLGVPMETMWPKVKDTRILAHLIDPRGKDEGGSGHSLEDLT 147

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               + S   +  K L+A   K      +    K         +  Y   D  +   + +
Sbjct: 148 RRY-IDSAVADNVKTLMADLAKANKTTKVNVWKK--VPFEDPHYQLYSGMDPILAARLIQ 204

Query: 174 RLEPLSSKEQELWY-------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           +L PL     EL         +   +   G+ +DV     L+  + V+      E+    
Sbjct: 205 KLAPLVKVSDELVENEHKLAAICSYMERTGFLLDVEYTEELSLDLQVK-ESHYNEIALNY 263

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN--KKLTPQAIQVFNNR 280
                     +++   L    G+ ++  T +        VLS     +   +        
Sbjct: 264 GCE--KVNSTDQVADVL-ESMGVRIKGRTPSGKRKVDDAVLSELVEHEKAGEFATAVIEA 320

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +A +     ++  ++  +S  R    +  L A RT R S    P Q LP          
Sbjct: 321 KKAGKWRKTWVDGFLKQRDSQNRCHAAINPLRA-RTARMSITGIPAQTLPAGD------- 372

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R C +A EG ++   D    E RVLA ++ +Q  ++
Sbjct: 373 ---------------------STIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQ 411

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF    DL++ T   +F     +   +                                 
Sbjct: 412 AFLDDADLHLMTARAAFGEHIQKDDPE--------------------------------- 438

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                        ++    NF R         A +        ++V   + + +  V +L
Sbjct: 439 ------------RKYAKVVNFGRVYGGGAKTVAEQTGLDMATAQKVVAGFDRAYPEVQKL 486

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              L +   + I NG                        +    GR L            
Sbjct: 487 SQRLQR---EAIRNGYITTP------------------FIDGLGGRRLPVDPQR------ 519

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPD 638
                               ++Q+ SRD+    ++    AG+   + L +HDEI+   P 
Sbjct: 520 -------------AYSALNYLIQSSSRDVTCRALLRLHDAGFTPYLRLPIHDEILASVPA 566

Query: 639 TDEFN-ASMLYHLMTS 653
                 A+ +  LM  
Sbjct: 567 EQAEWGANRIGELMAE 582


>gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
 gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261]
          Length = 854

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 91/638 (14%), Positives = 182/638 (28%), Gaps = 155/638 (24%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI-HRWICTLVLAR 101
                V+    P  L E L+  +V         +  +++  F  D P+  R     +   
Sbjct: 348 YWHGVVNAHAAPASLLEWLKTGNV------ITSDYKMMQGFFKEDAPLSDRVWDAQIAHY 401

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                       ++    S   E   + +    +    +     N   ++   +L     
Sbjct: 402 LLHPD------AKSHGPESWAAESIADPVEIAGQLWRVKNDLSSNIAQYQGLDKLM---- 451

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             DV +                    +   +   G  ++    + L+  +++   +++  
Sbjct: 452 -RDVEIPL----------------IPVLWRMETWGIGLNRESFNGLDSDLEIRIVEIEDT 494

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLT---PQAIQ 275
           +     G   +    +++   LF +  +     T+   +T   VL    K+     +  +
Sbjct: 495 IAEK-GGERINLNSPKQVAWLLFEKLNMPPIKETKTGYSTDVTVLEELVKMGLPEKEVPE 553

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +       S+     ++ LV A + +  L        ++ TGR S      QNLP     
Sbjct: 554 LILEHRELSKMRSGFVHPLVSAADENTDLIHGTFESTSTGTGRLSSRDPNLQNLP----- 608

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAG 394
                                    S  ++  ++   +G   V AD + +E RVLA +  
Sbjct: 609 --------------------AFGQWSTRLKEGLVPHKDGNIFVAADYSQVELRVLAHLCD 648

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           E+   +AFE   D++  T +  FNV P  VT + R                         
Sbjct: 649 EKRLKEAFEARRDIHTETASWIFNVNPQMVTPELRRFA--------------KVVNFGLL 694

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G++    A                                          +   + +  
Sbjct: 695 YGMSSFGLASR------------------------------LGIGQQEAGDIINRYFRAL 724

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            +V +    + ++++   + G A+                          GR     +V 
Sbjct: 725 PKVRDY---IEKSYQDARKRGYAVT-----------------------DFGRIRPLDEVS 758

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVH 629
            N        R                +Q  + DI    M+   K         +VL +H
Sbjct: 759 VNPRDRGALKR----------IAVNTPIQGTAADIARMAMIKFYKHFEKRQNVHLVLQIH 808

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAE 666
           D +VCE    ++      L  +M S  +    +PLK E
Sbjct: 809 DSLVCECAAEEKEAVVKDLTDIMESAAT--LSVPLKVE 844


>gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
 gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047]
          Length = 886

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 95/662 (14%), Positives = 188/662 (28%), Gaps = 143/662 (21%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDI 88
           L  F + +            +  ++ K+ LE          + ++     VL +   LD+
Sbjct: 344 LIGFAWGNQGQIYASADISLLTTKLFKKVLEQPI-------ATYDFKRSKVLLSHLGLDL 396

Query: 89  PIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           P   +    +             + L  +   + L + ++  GK +              
Sbjct: 397 PAASY-DARLANYLLSTVEDNEMATLARLYTTISLDTDEVVYGKGVKRAVPDKAVLLGHL 455

Query: 144 DRN----KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
            R       +         E+ + D+                E  L  +   +   G  V
Sbjct: 456 ARKVQVLLDSRPVMLDKLAEHEQADLYT------------DIELPLANVLAKMEIEGIAV 503

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE- 256
           +      + +   V   +L QE+  +    V +    ++L   LF +  L L     T+ 
Sbjct: 504 NQDSLQEMAEQNKVVIEELTQEIYEMAG-EVFNINSPKQLGVILFEKMQLPLHLTKKTKT 562

Query: 257 --TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
             +T   VL     + P   ++ + R   ++     +  L + + +DGR+         +
Sbjct: 563 GYSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYIMADGRIHTRYLQD-LT 620

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EG 373
           +TGR S      QN+P                                 +R     S + 
Sbjct: 621 QTGRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHDD 655

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIG 432
             L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  VT + R   
Sbjct: 656 AVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNA 715

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y            +  L +         ++  E +   + +   +     + 
Sbjct: 716 KAVNFGIVYGIS-----DFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDK 770

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
              +       +      RQ    V        +    +   G A    K   + L    
Sbjct: 771 GYVETLFKRRRQLPDINSRQ--FNVRSF---AERTAINSPIQGSAADILKIAMINLDQAL 825

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                   ML                                                  
Sbjct: 826 VAGGFETKML-------------------------------------------------- 835

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESK 671
             +        IVL V        P+ +      ++   M S  S A  +PL+ +    K
Sbjct: 836 --LQVHDE---IVLEV--------PNHELAAVKALVKETMESAVSLA--VPLRVDESAGK 880

Query: 672 RY 673
            +
Sbjct: 881 SW 882


>gi|309807121|ref|ZP_07701098.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
 gi|308166472|gb|EFO68674.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b]
          Length = 512

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/620 (12%), Positives = 171/620 (27%), Gaps = 139/620 (22%)

Query: 75  FERTVLKACFNL---DIPIHRW-ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           F+    +    L    I +       ++ +      +        L + +   +E     
Sbjct: 7   FDLK--RNYVGLQRLGITLFNVTDDIMLASYIADSENN----AGDLGVLANSYQEF---- 56

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ------- 183
                 E       +    H         +    V V  ++  ++ P   + +       
Sbjct: 57  -YVQSDEIIYGKGKKQ---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKN 112

Query: 184 ---ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
               +  +   +   G  V       +   +DV  T L  ++  L      +    ++L 
Sbjct: 113 IEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLG 171

Query: 241 TWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
             LF +  L     T+   +T   VL   +  +P    + + R   S+     +N L++ 
Sbjct: 172 VILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDY 230

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           + +DG++         + TGR S      QN+P      +                    
Sbjct: 231 IQADGKIHTRFLQ-TLTTTGRLSSVEPNLQNIPVKLEEGK-------------------- 269

Query: 358 QIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R   +   +   L   D + +E RVLA ++ E+  L+AF+ G D++  T  + 
Sbjct: 270 -----QIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKI 324

Query: 417 FNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           F ++   +VT   R   K +   + Y               L ++        N+  E++
Sbjct: 325 FGLSNLDEVTPLMRRHAKAVNFGIVYGIS-----DYGLAKNLGISRQEAQNFINNYFEQY 379

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
              +++ +   +   E    +  +     R+      K+  +        +    +   G
Sbjct: 380 PQIKDYMKAAVKLAREKGYAETIMHR--RRLLPDIHNKNFNIRSF---AERTAINSPIQG 434

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
            A    K                                     +     +L R      
Sbjct: 435 SAADIIKI-----------------------------------AMIKMQSELERRK---- 455

Query: 596 KLTENIVQAVSRDILAEGMM-NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTS 653
                         L   M+                 ++ + P  +      L   +M  
Sbjct: 456 --------------LKTKMILQIHDE-----------LLFDVPSEELDLIRTLVPEIMQQ 490

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                  +PL A+      +
Sbjct: 491 AAQ--LDVPLIADANWGHNW 508


>gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
 gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780]
          Length = 889

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 93/662 (14%), Positives = 183/662 (27%), Gaps = 138/662 (20%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFN 85
            ++ FA+   D   +L+      ++   + +         V     ++     VL   F 
Sbjct: 345 DLVGFAWSCGD---KLYATDKLELLQDPILKDFLEKTPLKV-----YDFKKAKVLLNRFG 396

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           LD+       + +             +     L  Q       L+              +
Sbjct: 397 LDLQ-APAFDSRLAKYLL-STVENNEISTIANLYGQTY-----LVDDETFYGK---GVKK 446

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYCV 199
             P                V     + ++L            EQ L ++   +   G  V
Sbjct: 447 AIPERETFLEHLARKVAVLVETEPVLLEKLCENGQLDLLYEMEQPLAFVLAKMEIAGIKV 506

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE- 256
                  +    ++   KL QE+  L      +    ++L   LF + GL +     T+ 
Sbjct: 507 KKETLLEMQAENELVIEKLTQEIYELAG-EEFNINSPKQLGELLFEKLGLPIEYTKKTKT 565

Query: 257 --TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
             +T   VL     + P   ++ + R   ++     +  L + + +DG++         +
Sbjct: 566 GYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYMQD-LT 623

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EG 373
           +TGR S      QN+P                                 +R   +   E 
Sbjct: 624 QTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWED 658

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIG 432
             L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R   
Sbjct: 659 SVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNA 718

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y            +  L ++        ++  E +   +N+   +     + 
Sbjct: 719 KAVNFGVVYGIS-----DFGLSNNLGISRKDAKAYIDTYFERFPGIKNYMDEVVREARDK 773

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
              +       E      R  +  +        +    +   G A    K   + L    
Sbjct: 774 GYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDKAL 828

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
            +      ML                                                  
Sbjct: 829 VEGGYQTKML-------------------------------------------------- 838

Query: 613 GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESK 671
             +        IVL V        P ++      L    M         +PL A+  E  
Sbjct: 839 --LQVHDE---IVLEV--------PKSELAAIKKLVKQTMEEAIQ--LSVPLIADENEGV 883

Query: 672 RY 673
            +
Sbjct: 884 TW 885


>gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
 gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
           dolosa AUO158]
          Length = 736

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 97/345 (28%), Gaps = 49/345 (14%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F  +          H             + 
Sbjct: 346 AFDTETTALDPMV----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 395

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+ D   V  +  ++  VL     +++       TL+ +              
Sbjct: 396 ARLKPWLESADRRKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 453

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           AL+    K            K E       +       A     EY   D  +T ++ + 
Sbjct: 454 ALRHLGIKTI----------KYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHRA 503

Query: 175 LEPLS-----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
           L P               E  + ++ + +   G  +D AL H  +  +     +L+ +  
Sbjct: 504 LYPQIAREPGLERVYREIEMPVSHVLRKMERTGVLIDDALLHAQSTEIATRLIELEAQAY 563

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279
            L  G   +    +++    F +  L +   T     +T + VL    +  P    +  +
Sbjct: 564 ELAGG-EFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEH 622

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
           R   S+      + +   +        T       R+   S    
Sbjct: 623 R-GLSKLKSTYTDKMPRMVIPATGRVHTNYAQAVRRSRAASHRTI 666


>gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143]
 gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143]
          Length = 877

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 99/667 (14%), Positives = 188/667 (28%), Gaps = 148/667 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83
            ++ FA+   D             + Q   LKE LE      V     ++     VL   
Sbjct: 333 DLVGFAWSCGDR----LYATDKLELLQEPILKEFLE-KTPLKV-----YDFKKAKVLLNR 382

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALK--AVGEALK---LSSQKMEEGKELIARFCKGET 138
           F L++       + +           +   +        L   +   GK +     + E 
Sbjct: 383 FGLNLQ-APAFDSRLAKYLLSTVENNEISTIANLYGQTYLVDDETFYGKGVKKAIPEREK 441

Query: 139 HECLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                 R                 E+ + D+     ++         EQ L ++   +  
Sbjct: 442 FLEHLARKVAVLVETEPVLLEKLSEHGQLDL-----LY-------DMEQPLAFVLAKMEI 489

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--E 252
            G  V       +    +V   +L QE+  L      +    ++L   LF + GL L   
Sbjct: 490 AGIKVKKETLLEMQAENEVVIEQLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYT 548

Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             T+   +T   VL     + P   ++ + R   ++     +  L + + +DG++     
Sbjct: 549 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYV 607

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               ++TGR S      QN+P                                 +R   +
Sbjct: 608 QD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFV 641

Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKD 427
              E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT +
Sbjct: 642 PEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPN 701

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K +   + Y            +  L ++        ++  E +   +N+   +  
Sbjct: 702 DRRNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVR 756

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
              +    +       E      R  +  +        +    +   G A    K   + 
Sbjct: 757 EARDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQ 811

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
           L     +      ML                                             
Sbjct: 812 LDKALVEGGYQTKML--------------------------------------------- 826

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
                  +        IVL V        P  +     +L    M         +PL A+
Sbjct: 827 -------LQVHDE---IVLEV--------PKAELAAVKVLVKQTMEEAIQ--LSVPLIAD 866

Query: 667 GYESKRY 673
             E   +
Sbjct: 867 ENEGATW 873


>gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle]
          Length = 608

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 106/676 (15%), Positives = 195/676 (28%), Gaps = 157/676 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET         G+  Y +     L  FG       +            +K ALE 
Sbjct: 38  LGLDSETT--------GLDIYNDGFRCRLVQFGT-PSEAWVVPVERGGPYAGDVKRALEM 88

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAVG 113
                V HN+ ++  V +    + +     +   T +LA               +L+ + 
Sbjct: 89  VQ-GFVLHNAAYDLQVFERTLGVPMEAMWPKVKDTRILAHLIDPRGKDEGGSGHSLEDLT 147

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               + S   +  K L+A   K      +    K         +  Y   D  +   + +
Sbjct: 148 RRY-IDSAVADNVKTLMADLAKANKTTKVNVWKK--VPFEDPHYQLYSGMDPILAARLIQ 204

Query: 174 RLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           +L PL          E +L  +   +   G+ +DV     L+  + V+      E+    
Sbjct: 205 KLAPLVKVSDELVDNEHKLAAICSYMERTGFLLDVEYTEELSLDLQVK-ESHYNEIALNY 263

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSN--KKLTPQAIQVFNNR 280
                     +++   L    G+ ++  T +        VLS     +   +        
Sbjct: 264 GCE--KVNSTDQVADVL-ESMGVRIKGRTPSGKRKVDDAVLSELVEHEKAGEFATAVIEA 320

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +A +     ++  ++  +S  R    +  L A RT R S    P Q LP          
Sbjct: 321 KKAGKWRKTWVDGFLKQRDSQNRCHAAINPLRA-RTARMSITGIPAQTLPAGD------- 372

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  +R C +A EG ++   D    E RVLA ++ +Q  ++
Sbjct: 373 ---------------------STIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQ 411

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF    DL++ T   +F     +   +                                 
Sbjct: 412 AFLDDADLHLMTARAAFGEHIQKDDPE--------------------------------- 438

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                        ++    NF R         A +        ++V   + + +  V +L
Sbjct: 439 ------------RKYAKVVNFGRVYGGGAKTVAEQTGLDMATAQKVVAGFDRAYPEVQKL 486

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              L +   + I NG                        +    GR L            
Sbjct: 487 SQRLQR---EAIRNGYITTP------------------FIDGLGGRRLPVDPQR------ 519

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPD 638
                               ++Q+ SRD+    ++    AG+   + L +HDEI+   P 
Sbjct: 520 -------------AYSALNYLIQSSSRDVTCRALLRLHDAGFTPYLRLPIHDEILASVPA 566

Query: 639 TDEFN-ASMLYHLMTS 653
                 A+ +  LM  
Sbjct: 567 EQAEWGANRIGELMAE 582


>gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
 gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638]
          Length = 904

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 103/648 (15%), Positives = 187/648 (28%), Gaps = 136/648 (20%)

Query: 37  FDDHPVELWDCVHDPVM----PQVLKEALENTDVTIVAHNSYFERTVLKACFN--LDIPI 90
             +  +       D +M       L   L++    +VA     +        +    I +
Sbjct: 378 VREGNIFFIGVDGDELMCKVTAAELAAGLQSAKTIVVA-----DVKSFLRADDAWGQIQL 432

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            RW    + A          A           +  G+EL     +              H
Sbjct: 433 FRWFDLSLAAYLLNPEERNYAWDR----LRAMLFAGEELPDAVDEVHPDAQGMAALALMH 488

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
               R   +    D  +T  +          E  L  +   +   G  +D+         
Sbjct: 489 VLGPR--IKSAGLD-ELTANL----------EIPLIPVLADMEKAGITIDLDAFADFLTE 535

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
           V+    +L + +         + R  +++ T LF   GL     T     +T   VL   
Sbjct: 536 VNERINELTRVIHERAG-EPFNIRSSQQMATVLFDSLGLKPGGKTPKGALSTANSVLEKL 594

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                    +   R +  +     L  L + +N++GR+      L A+ TGR S      
Sbjct: 595 SGQHEIITDILEYR-KMEKLRSTYLEPLPKLVNANGRIHTNFNQL-ATATGRLSSSGPNL 652

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P      +                          +R+C  A EG +L  AD + +E 
Sbjct: 653 QNIPIRGDQGKR-------------------------MRACFTAGEGLRLAAADYSQVEL 687

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA  +G+   + AFE  ED++  T A  F+  PA VT D+R   K +   L Y  G +
Sbjct: 688 RVLAHFSGDPALVSAFEHDEDIHSRTAALLFDRDPADVTSDERRNAKTINFGLIYGMGPQ 747

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +      L +             E+ +  + F   + E   E        G    R+
Sbjct: 748 KLSRE-----LGIKINEAKEFIAKYFEKLDVLKEFYDSVVEQGREKGYVTTLSGR--RRL 800

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                    ++    ++  +    T+  G A    K   + +       +N  +    GR
Sbjct: 801 LPELHSTSPQI---LSQARRQAINTVIQGSAADIIKMAMIKV------ADNAEIKHLGGR 851

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
            +                                              +           
Sbjct: 852 LI----------------------------------------------LQIHDE------ 859

Query: 627 TVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                ++ E P+ +      +L   M +  + A  +PLK +    + +
Sbjct: 860 -----LLVEGPEENIEEIGKLLQKDMQTVATLA--VPLKVDLGLGRNW 900


>gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
 gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5]
          Length = 877

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 98/667 (14%), Positives = 186/667 (27%), Gaps = 148/667 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83
            ++ FA+   D             + Q   LKE LE      V     ++     VL   
Sbjct: 333 DLVGFAWSCGDK----LYTTDKLELLQEPILKEFLE-KTPLKV-----YDFKKAKVLLNR 382

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALK--AVGEALK---LSSQKMEEGKELIARFCKGET 138
             L++       + +           +   +        L   +   GK +     + E 
Sbjct: 383 LGLNLQ-APAYDSRLAKYLLSTVENNEISTIANLYGQTYLVDDETFYGKGVKKAIPEREK 441

Query: 139 HECLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                 R                 E+ + D+     ++         EQ L ++   +  
Sbjct: 442 FLEHLARKVAVLVETEPVLLEKLSEHGQLDL-----LY-------DMEQPLAFVLAKMEI 489

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--E 252
            G  V       +    +V   +L QE+  L      +    ++L   LF + GL L   
Sbjct: 490 AGIKVKKETLLEMQAENEVVIEQLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYT 548

Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             T+   +T   VL     + P   ++ + R   ++     +  L + +  DG++     
Sbjct: 549 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILDDGKIHTRYV 607

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               ++TGR S      QN+P                                 +R   +
Sbjct: 608 QD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFV 641

Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKD 427
              E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT +
Sbjct: 642 PEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPN 701

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K +   + Y            +  L ++        ++  E +   +N+   +  
Sbjct: 702 DRRNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVR 756

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
              +    +       E      R  +  +        +    +   G A    K   + 
Sbjct: 757 EARDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQ 811

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
           L     +      ML                                             
Sbjct: 812 LDKALVEGGYQTKML--------------------------------------------- 826

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
                  +        IVL V        P ++      L    M         +PL A+
Sbjct: 827 -------LQVHDE---IVLEV--------PKSELAAVKDLVKQTMEEAIQ--LSVPLIAD 866

Query: 667 GYESKRY 673
             E   +
Sbjct: 867 ENEGATW 873


>gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 889

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/645 (14%), Positives = 170/645 (26%), Gaps = 132/645 (20%)

Query: 44  LWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +D        +      L + D   V H++     VL       +   R   T + A  
Sbjct: 357 WFDPAQLDETDETAFAAWLADADRPKVFHDAKGAMRVLAEH-GWSVDGVRM-DTALAAYL 414

Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   AL A+                           +           EA  L  +
Sbjct: 415 VKPGRRSFALDALSLEYLH------------RELAPAAAADGQLAFGADEAAEAEMLMIQ 462

Query: 160 -YCKGDV--TVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
                D+       + +          E     L   +   G   D A    + Q+    
Sbjct: 463 ARSILDLGEVFEGRLEEVGAADLLRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGA 522

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLT 270
             +  +E  +       +    ++L+  LF E  L     T+T       +      +  
Sbjct: 523 VQQAVKEAHAAAGH-EFNLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTD 581

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
            +   +       ++  V  +  L++ + +DGR+  T     A+ TGR S      QN+P
Sbjct: 582 NELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP 639

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVL 389
             +                              +R   +  EG + L+ AD + IE RV+
Sbjct: 640 VRTDEGRA-------------------------IRRGFVVGEGFESLMTADYSQIELRVM 674

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++ +   ++AF +GEDL+ T  ++ F V  + V  + R   K M   L Y        
Sbjct: 675 AHLSEDAGLIEAFTSGEDLHTTAASQVFGVDRSAVDAEMRRKIKAMSYGLAYG-----LS 729

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
               +  LN+         ++  E +    ++ R   +            G         
Sbjct: 730 AFGLSQQLNIEAAEARALMDAYFERFGGVRDYLRRAVDEARATGYTATLFGRRRYLP--- 786

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
               +S   +      +        G A    K   + +    ++               
Sbjct: 787 --DLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLNVDRALRE--------------- 829

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
                                                 D L   M+          L VH
Sbjct: 830 -------------------------------------AD-LKSRML----------LQVH 841

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           DEIV E    +      +    M+         PL         +
Sbjct: 842 DEIVLEIAPGERAATEEIVRREMSGAVQ--LRAPLDVSVGVGPDW 884


>gi|217031810|ref|ZP_03437313.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
 gi|216946462|gb|EEC25064.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128]
          Length = 383

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/491 (15%), Positives = 158/491 (32%), Gaps = 120/491 (24%)

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +  +G+ +DV     L Q    E   L++++  L      +    ++L   L+ + GL
Sbjct: 1   MGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVD-FNLNSPKQLGEVLYEKLGL 59

Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             ++ + +T ++ L       P    +   R   ++        L+   + D ++  T  
Sbjct: 60  P-KNKSHSTDEKNLLKILDKHPSIALILEYR-ELNKLFNTYTTPLLRLKDKDDKIHTTFI 117

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
             G + TGR S      QN+P  S                              +R   I
Sbjct: 118 QTG-TATGRLSSHSPNLQNIPVRSPKGL-------------------------LIRKGFI 151

Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           AS +   L+  D + IE R+LA  + ++  ++AF  G D+++ T    F      + K++
Sbjct: 152 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEK 208

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R+I K +                    G+                               
Sbjct: 209 RSIAKSIN--------------FGLVYGMG------------------------------ 224

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
             + +          +   +A+ ++   + +  N + +   +T +               
Sbjct: 225 SKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMKEEILKTSK--------------- 269

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                           GR  V+ D      Y+            Y  +    I Q  + D
Sbjct: 270 -----------AFTLLGRYRVF-DFNGVNDYVKGN---------YLREGVNAIFQGSASD 308

Query: 609 ILAEGMMNATKA-----GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLP 662
           +L  GM+  ++         ++L VHDE++ E  + +       +  ++     +   +P
Sbjct: 309 LLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVP 367

Query: 663 LKAEGYESKRY 673
           L+   + +KR+
Sbjct: 368 LETSAFIAKRW 378


>gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 919

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/467 (16%), Positives = 141/467 (30%), Gaps = 60/467 (12%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWI-CTLVLARSNGLPS 107
           D    +   + L + +   V H    +   L   F    + +      T + A       
Sbjct: 488 DEDDERAFADWLGDPERPKVMH----DAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGR 543

Query: 108 ---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
              AL A+             G+EL+               ++   R             
Sbjct: 544 RTFALDALSLEY--------LGRELVPAQESDGQLA-FGADDETQARTLMVEARTILDLG 594

Query: 165 VTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             +   + +          E     L   +   G   D      + +       +  +E 
Sbjct: 595 TALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQAVREA 654

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKK--LTPQAIQVF 277
            +       +    ++L+  LF E  L     T+T   T    L+           + + 
Sbjct: 655 HAAVGH-EFNLGSPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLML 713

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R + ++     +  L++++  DGR+  T     A+ TGR S      QN+P  +    
Sbjct: 714 RHREQ-AKLRST-VEGLIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGR 770

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQ 396
                                     +R   +  EG + L+ AD + IE RV+A ++ ++
Sbjct: 771 A-------------------------IRRGFVVGEGYEALMTADYSQIELRVMAHLSEDE 805

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF +GEDL+ T     FNV P  V  + R   K M   L Y            +  
Sbjct: 806 GLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQ 860

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
           L +         ++  E +    ++   + E           +G   
Sbjct: 861 LGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRR 907


>gi|119602944|gb|EAW82538.1| polymerase (DNA directed) nu, isoform CRA_a [Homo sapiens]
          Length = 891

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 93/643 (14%), Positives = 188/643 (29%), Gaps = 148/643 (23%)

Query: 67  TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117
            ++  N+  F R VL   F  D               + A          + + + E   
Sbjct: 315 PVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY- 372

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              +K    K                 R      E  +           +T ++  +L+ 
Sbjct: 373 --CEKSITVKVNSTYGNSSRNIVNQNVR------ENLKTLYR-------LTMDLCSKLKD 417

Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
               +        L  +   +      V+       + ++     +L+QE   +      
Sbjct: 418 YGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERF 476

Query: 232 SSRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +L+  LF +  L             L +  +T + VL++ + L P    +   R
Sbjct: 477 LITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYR 536

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L+ A    G +  T    G + TGR S      Q + +         
Sbjct: 537 Q-VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPK 593

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                    +T  P          R+  ++S+G   + AD + IE R+L  ++G+   LK
Sbjct: 594 NFKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLK 643

Query: 401 AFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            F+    +D++ T  ++  +V   QVT   R   K +  A+ Y  GA   + +A+  G+ 
Sbjct: 644 LFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY--GAGKER-LAACLGVP 700

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +                                             +  +++ QK+ ++ 
Sbjct: 701 IQ-----------------------------------------EAAQFLESFLQKYKKIK 719

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           +       A  Q  + G  +                          GR      +    +
Sbjct: 720 DF---ARAAIAQCHQTGCVVSI-----------------------MGRRRPLPRIH---A 750

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDE 631
           +      Q  R+          +VQ  + D+    M++              +V  +HDE
Sbjct: 751 HDQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDE 804

Query: 632 IVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++ E  D      + L           + +PLK      + + 
Sbjct: 805 LLFEVEDPQIPECAALVR---RTMESLEQVPLKVSLSAGRSWG 844


>gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
 gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396]
 gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC
           49124]
          Length = 879

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 97/663 (14%), Positives = 188/663 (28%), Gaps = 143/663 (21%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++           F + +          D +  +  + AL +  V     N  ++   
Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377

Query: 79  --VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIA 131
             VL +   +D+P        +             S +  +   L L + ++  GK    
Sbjct: 378 SKVLLSHLGIDLPTAN-FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVVYGKGAKR 436

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              + E       +     + A  +  E              + E L   E  L  +   
Sbjct: 437 AVPEKEVLLSHLAKKVKVLQVAKPVMLEKLAE--------HGQSELLFDMELPLANVLAK 488

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  V     + +     V   KL QE+  +      +    ++L   LF + GL L
Sbjct: 489 MEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAG-EEFNINSPKQLGVILFEKMGLPL 547

Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+   +T   VL     + P   ++   R   ++     +  L + +  DG++  
Sbjct: 548 EYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQ-ITKLQSTYVLGLQDYILEDGKIHT 606

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  ++TGR S      QN+P                                 +R 
Sbjct: 607 RYVQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 640

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             + S E   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  V
Sbjct: 641 AFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDV 700

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T + R   K +   + Y            +  L ++        ++  E +   + +   
Sbjct: 701 TPNDRRNAKAVNFGIVYGIS-----DFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDN 755

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
           +     +    +       E      R  +  V        +    +   G A    K  
Sbjct: 756 VVREAKDKGYVETLFHRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADILKIA 810

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
            + L     +      ML                                          
Sbjct: 811 MINLDKALVEGGYKTKML------------------------------------------ 828

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPL 663
                     +        IVL V        P+ +      ++   M +    A  +PL
Sbjct: 829 ----------LQVHDE---IVLEV--------PNDELVAMEALVKETMEAAVELA--VPL 865

Query: 664 KAE 666
            A+
Sbjct: 866 IAD 868


>gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 912

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 104/776 (13%), Positives = 193/776 (24%), Gaps = 202/776 (26%)

Query: 44  LWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
             D          + K   E+ D   V HN  F+R V++    + +       T+ +AR 
Sbjct: 189 WVDTLKLGDEGWAIFKPYFESPDAKKVWHNYSFDRHVIENHGGIKLAGFA-ADTMHMARL 247

Query: 103 NGLPSALKAV--GEALKLSSQKMEE--------GKELIARFCKGETHECLYD-------- 144
                 L+     EAL    + M E        G+ELI      +               
Sbjct: 248 WNSNRKLEGGYSLEALTSDPKVMSEAGEMFSEAGEELIRSKRGMKKIFGKPKIKKDGTPG 307

Query: 145 --------RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS---------------- 180
                       N  E    + EY   D   T  + + LE                    
Sbjct: 308 KTIELPPIDQIQNDPEQRETWIEYSALDAQATWFLRESLEAKLRGISCDACPRLSDKPTF 367

Query: 181 ------------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE-----LE 223
                         +E   +   +   G  VD        +    ++   +       ++
Sbjct: 368 HECANLWEFYTTYLREFGEVLTDMESAGMFVDKKHLEGAEKQALADKKVAEDYFRRWAMK 427

Query: 224 SLTYGLVSSSRCLEKLKTWLFL--------------------------------ETGLHL 251
                   +     +++  LF                                   G   
Sbjct: 428 MCPAAEHMNVGSGIQVRQLLFAGARNKRPDKPGVEKEREFAMVSPEWTAWDEGGREGKAP 487

Query: 252 EDLTETTCQR----------------------VLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           +   + T                         VL S       A ++ +     + +   
Sbjct: 488 KKGAKFTLHGVTKRDLAVPVYTATGLPAVSSVVLRSLAGRPGAAREIVDTWDALTDAEKT 547

Query: 290 KLNTLVEAMNSDGRLRGTLQ------------FLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             + L ++  +     G                  A+     S  + P Q+     ++  
Sbjct: 548 -NDALKKSCGAAYDAFGGGYDGAEACAAVDALNDVAAIDTLLSNFIIPLQSDNLRGKTGR 606

Query: 338 -------ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
                    +            +   L+     +R       G  LVVAD   +E R+LA
Sbjct: 607 VHTALNINTETGRLSARRPSLQNQPALEKDRYGIRKAFTCRPGNILVVADYGQLELRLLA 666

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            MAG     +AFE G D +  T    +      + + +          L Y         
Sbjct: 667 HMAGCASMREAFEAGGDFHSRTAMGMYKEIREAMDEGKCL--------LEYG-------- 710

Query: 451 MASTTGLNLNTF---AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              + G + +     A +    ++        NF     +     A +        E   
Sbjct: 711 ---SEGYDEDEANRPALVKDMFASERRKAKVLNFSIAYGKTAHGLAKDFGVSTKEAEDTV 767

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             W      V   W E+  A     + GK                            GR 
Sbjct: 768 NLWYSDRPEVRA-WQEVQHA--NATKLGKVSTLL-----------------------GRH 801

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------G 621
               +  +             R            +Q  + DI    MM   +       G
Sbjct: 802 RNLPEASSRDEMRRQH---ALRASINTP------IQGGAADIAMLAMMQIHRCPRLKEIG 852

Query: 622 YDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNP---SWAKGLPLKAEGYESKRY 673
           Y++++ +HDE++ E P+   +   +++   M +          + L  +G  +K +
Sbjct: 853 YELLMQIHDEVILEGPEEHKDEALALVKRHMENPFNDHENLCDVDLNVDGNYAKTW 908


>gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 901

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 99/637 (15%), Positives = 184/637 (28%), Gaps = 142/637 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           L+  L +       H++     +L      +++       T + A               
Sbjct: 382 LRAWLGDESRPKAVHDAK--GPMLALWAQGMELRGLTC-DTALAAY-------------- 424

Query: 116 LKLSSQKMEEGKELIARFCKGE--THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           L +  Q+    ++L+  + + E         +      E      E         RE+  
Sbjct: 425 LAMPGQRTFLLEDLVRAYLQRELRGEAETGGQASLFDDEDDDTARELGLR-ALAVRELAD 483

Query: 174 RLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            LE                  L  +   +   G   D      L         +  +   
Sbjct: 484 ALEAFLEPRGGTHLMREVELPLVTVLAELERAGIAADGDYFSGLEAEFGAAVKQAVEAAH 543

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK-----LTPQAIQVFN 278
           +       +    ++L+  LF+   L     T+T       +               +  
Sbjct: 544 AAVG-EQFNLGSPKQLQEILFVRLNLPKTKKTKTGYTTDADALAWLAAQTEHELPTIMLR 602

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +R + ++  V  +  LV+ +  DGR+  T   + A+ TGR S      QN+P  +     
Sbjct: 603 HRDQ-AKLKVT-VEGLVKEIADDGRIHTTFNQIVAA-TGRLSSEKPNLQNIPIRTVEGRR 659

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQW 397
                                    +R   +   G   L+ AD + IE R++A ++G++ 
Sbjct: 660 -------------------------IRQGFVVGPGYETLLTADYSQIELRIMAHLSGDES 694

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AFE+G D + TT AR F++ P QVT + RA  K M   L Y               L
Sbjct: 695 LIAAFESGHDFHKTTAARVFDIEPEQVTGEMRAKIKAMNYGLAYG-----LSDFGLAGQL 749

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           N+             EE+    +F   +     +    +                     
Sbjct: 750 NIPVQEAKALKEEYFEEFGGVRDFLNAIVAQARQDGYTETI------------------- 790

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                   +RR +P +     +   +                 R
Sbjct: 791 ----------------------MGRRRYLPDLNSDNRQRREM---------------AER 813

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
             LN   +          K+    VQ  +   + E        G  ++L VHDE+V E  
Sbjct: 814 MALNAPIQG---SAADIIKVAMLNVQ-SA---VKEA-----ALGSRMLLQVHDELVFEVA 861

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             +      L    M +   ++  +PL+      + +
Sbjct: 862 PGELETLRELVTDRMNAA--YSLRVPLEVSVGVGRTW 896


>gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
 gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296]
          Length = 889

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 92/665 (13%), Positives = 186/665 (27%), Gaps = 144/665 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE---RTVLKACFN 85
            ++  A+   D   +L+      ++ + + +         V     ++     VL     
Sbjct: 345 DLVGLAWSCGD---KLYATDKLELLQEPIFKEFLEKTPLKV-----YDFKKAKVLLNRLG 396

Query: 86  LDIPIHRWICTLVLARSNGLPSALK--AVGEALK---LSSQKMEEGKELIARFCKGETHE 140
           L++       + +           +   +        L   +   GK +     + E   
Sbjct: 397 LNLQ-APAFDSRLAKYLLSTVENNEISTIANLYGQTYLVDDETFYGKGVKKAIPEREKFL 455

Query: 141 CLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
               R                 E+ + D+     ++         EQ L ++   +   G
Sbjct: 456 EHLARKVAVLVETEPVLLEKLSEHGQLDL-----LY-------DMEQPLAFVLAKMEIAG 503

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDL 254
             V       +    +V   +L QE+  L      +    ++L   LF + GL L     
Sbjct: 504 IKVKKETLLEMQAENEVVIEQLTQEIYELAG-EEFNINSPKQLGVLLFEKLGLPLEYTKK 562

Query: 255 TE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           T+   +T   VL     + P   ++ + R   ++     +  L + +  DG++       
Sbjct: 563 TKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILDDGKIHTRYVQD 621

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             ++TGR S      QN+P                                 +R   +  
Sbjct: 622 -LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPE 655

Query: 372 -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQR 429
            E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R
Sbjct: 656 WEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDR 715

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   + Y            +  L ++        ++  E +   +N+   +    
Sbjct: 716 RNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREA 770

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            +    +       E      R  +  +        +    +   G A    K   + L 
Sbjct: 771 RDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLD 825

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
               +      ML                                               
Sbjct: 826 KALVEGGYQTKML----------------------------------------------- 838

Query: 610 LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGY 668
                +        IVL V        P ++      L    M         +PL A+  
Sbjct: 839 -----LQVHDE---IVLEV--------PKSELAAVKALVKQTMEEAIQ--LSVPLIADEN 880

Query: 669 ESKRY 673
           E   +
Sbjct: 881 EGATW 885


>gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
 gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399]
          Length = 893

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 90/606 (14%), Positives = 168/606 (27%), Gaps = 137/606 (22%)

Query: 90  IHRWICTLVLARSNGLP---SALKAVGEAL--KLSSQKMEEGKELIARFCKGETHECLYD 144
                   +            +L     A   +LS+ +  E + L A +        L++
Sbjct: 399 GAEVFDLALADYLLRPEERQRSLDRAASAYLDELSAPQTAEDRTLSAVYSHLANGAPLHN 458

Query: 145 RNKPNHREAWRLFGEY-----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                +         Y        D  +T E++  +E        L  +   +   G  V
Sbjct: 459 EQIAFYEVILA-AQLYGPMSAALADANLT-ELYGTVE------LPLVPILAAMERTGVAV 510

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--- 256
           + A         +    +++Q++ +L      +    ++L   LF   GL    + +   
Sbjct: 511 NRAALGRALAAANARIAEIEQDIYALAGT-EFNISSPKQLGEVLFDRLGLTSPKMKKTKT 569

Query: 257 --TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGA 313
             +T   VL   +   P   +V   R   S+     L  +   +  D GR+  +      
Sbjct: 570 GYSTNAEVLEEMRAAHPVVDRVLTYR-MWSKIRSTYLEGIGALIRPDTGRVHTSFNQ-TV 627

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR S      QN+P  +                              VR+     EG
Sbjct: 628 TATGRLSSSDPNLQNIPVRTEEGRA-------------------------VRALFEPGEG 662

Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+ AD + IE R+LA M+G++  + AF  G+D++  T +  F V  A+VT  QR   
Sbjct: 663 YDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRRSA 722

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +   + Y            +  L +             E +     F   +  +   +
Sbjct: 723 KAVNFGIVYG-----LSDYGLSQDLGIPRKEAAGYIERYFERYHGVRAFLDRVVADAHTN 777

Query: 493 AIEDLFIGTACERVKKAWRQKHSRV--SELWNE--LHQAFEQTIENGKAIIARKRRDVPL 548
                  G          R+    +            +    T   G A    K   +  
Sbjct: 778 GFVTTLYGR---------RRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKIAMIRA 828

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
               +       +L                                              
Sbjct: 829 DAALRAAGVKSRIL---------------------------------------------- 842

Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEG 667
                 +        +VL    E+V    + +      +L   M+     A  +PL  + 
Sbjct: 843 ------LQVHDE---LVL----EVV----NDEIAQVTELLTAAMSGAAQLA--VPLAVDV 883

Query: 668 YESKRY 673
           +  K +
Sbjct: 884 HTGKNW 889


>gi|297672987|ref|XP_002814560.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Pongo abelii]
          Length = 1585

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 77/541 (14%), Positives = 157/541 (29%), Gaps = 126/541 (23%)

Query: 167  VTREIFKRLEPLSSKEQ-------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            +T  +F  ++      Q        L  +   +      V+       + ++     +L+
Sbjct: 1091 LTLILFLPIKQGYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELE 1150

Query: 220  QELESLTYGLVSSSRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKK 268
            QE   +            +L+  LF +  L             L +  +T + VL++ + 
Sbjct: 1151 QEAHFVAG-EPFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRD 1209

Query: 269  LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
              P    +   R    +     ++ L+ A    G +  T    G + TGR S      Q 
Sbjct: 1210 FHPLPKIILEYRQ-VHKIKSTFVDGLL-ACTKKGSISSTWNQTG-TVTGRLSAKHPNIQG 1266

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            + +                 ++T  P          R+  ++S+G   + AD + IE R+
Sbjct: 1267 ISKHPIQITTPKNFKGKEDKTLTISP----------RAMFVSSKGHTFLAADFSQIELRI 1316

Query: 389  LAWMAGEQWKL--KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
            LA ++G+   L        +D++ T  ++  +V   QVT   R   K +  A+ Y     
Sbjct: 1317 LAHLSGDPELLKLFQEAERDDVFSTLTSQWKDVPMEQVTHADREQTKKVVYAVVY----- 1371

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                                                          A           + 
Sbjct: 1372 ---------------------------------------GAGKERLAACLGVPVQEAAQF 1392

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             +++ QK+ ++ +       A  Q  + G  +                          GR
Sbjct: 1393 LESFLQKYKKIKDF---ARAAIAQCHQTGYVVSI-----------------------MGR 1426

Query: 567  SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TK 619
                  +    ++      Q  R+          +VQ  + D+    M++          
Sbjct: 1427 RRPLPRIH---AHDQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASRT 1477

Query: 620  AGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRY 673
                +V  +HDE++ E  D      A+++   M              +PLK      + +
Sbjct: 1478 LTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 1537

Query: 674  R 674
             
Sbjct: 1538 G 1538


>gi|168066269|ref|XP_001785063.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663356|gb|EDQ50124.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1683

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 86/744 (11%), Positives = 183/744 (24%), Gaps = 198/744 (26%)

Query: 28   VCVILFAFGFDDHPVELWDC---------------VHDPVMPQVLKEALENT-------- 64
              V+  A  + D PV   +                 +  V+ + +  +L  +        
Sbjct: 1033 FEVMGVAICWKDSPVYYVNLSIVHKSFQHATNPNCGNKEVIIREVNSSLIESQTRWRHVG 1092

Query: 65   ------DVTIVAHNSYFERTVLKACFNLDIPIHR-------------------------- 92
                   V  ++ +   +  VL     L +P  R                          
Sbjct: 1093 TMLSKTGVRKISWDLKIQLQVLNN-PGLHVPSARQTTEHERGVPDVKAREGEVVALPSIR 1151

Query: 93   ----WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                 I T V A               L    Q+++  K L             +     
Sbjct: 1152 VQMPCIDTRVAAWLLWP----DEESTRLLSLEQEVK--KRLPGEIAAAAGRAGRWANQMG 1205

Query: 149  NHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYC 198
                        C   V     +      L             E  L  +   +      
Sbjct: 1206 CV------AHNGCCRRVAQIWVLHCAFWKLLVAEGLHEALLQLEMPLVRVLADMETWSLG 1259

Query: 199  VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----D 253
            +D+ +       +  +  +L+ + E L      S     ++   L+    L +       
Sbjct: 1260 LDMRVCRKAQSHLHCKLRELEAQGEKLAGMS-FSLSAPAEVAHVLYRHLKLPVPPGCKGK 1318

Query: 254  LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNS----------- 300
               +T ++ L   +   P A  +  +R  +         +    ++              
Sbjct: 1319 HHPSTDKQALEFLRNHHPIADIIKEHRSLSKLLQSTLGSIIAWAKSPEPLFSSQERSSRG 1378

Query: 301  DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
            +           ++ TGR S      Q +         +   I    +          ++
Sbjct: 1379 EIFSIAGHWLQTSTATGRLSMEDPNLQCVEH------AVSFTIEGGRSLDGDQEKANNVV 1432

Query: 361  SDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSFN 418
                R   + S EG  L+ AD + IE R++A  +G+   +        DL+    A+   
Sbjct: 1433 EVNARQAFVPSQEGWILLSADYSQIELRLMAHFSGDPSLVSLLSHPTGDLFRVLAAQWTG 1492

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            +   +V+  QR   K +   + Y  G     +                            
Sbjct: 1493 LPMCEVSDKQRERTKRLVYGILYGMGVNTLAEHLE------------------------- 1527

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                                     + + + ++     V+     L  A +   + G   
Sbjct: 1528 -------------------CPVAEAQVMLERFKGTFPLVTTW---LSHAVDSCRQKGYIT 1565

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                     SGR      +          T +   +     +  
Sbjct: 1566 TL-----------------------SGRKRYLDKIN---------TGKWGEQAKAERQAV 1593

Query: 599  ENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPDTDEFNASMLYH-L 650
             +I Q  + D++   M+    A          ++L +HDE++ E       + + +    
Sbjct: 1594 NSICQGSAADLIKLAMIKVHDAISSSHQGSCRLLLQIHDELLLEVDKRVLKHVAQILRSS 1653

Query: 651  MTSNPSWAKGLPLKAEGYESKRYR 674
            M    +    +PL+ +      + 
Sbjct: 1654 MEGAIT--LRVPLRTKLQVGTSWG 1675


>gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder]
          Length = 604

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 107/674 (15%), Positives = 210/674 (31%), Gaps = 157/674 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET         G+  Y++     L  FG  +    +      P   +  ++AL N
Sbjct: 38  LGLDTETT--------GLDIYSDGFRCRLVQFGTPN-EAWVIPVELGPRYEEEARQALRN 88

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAVG 113
                V HN+ ++  V++    + +     +   T +LA                L+ + 
Sbjct: 89  VK-GFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVDPRPFKEGGIGHKLEELV 147

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +   + +   E  K L+A   +       +   K      +  +  Y   D  +   + +
Sbjct: 148 KHY-IDAPVAENVKTLMATLAREYKTTKAHIWTKVEWTNPY--YQLYAGMDPILAARLLQ 204

Query: 174 RLEPLSS--------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +L PL           E +L  +   +  RG+ +DV  +  L++ +  ++     + + L
Sbjct: 205 KLIPLVPSVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKADIL 264

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRVLSSNKKLTPQAIQVFNNRMR 282
               + +     ++   L        E          + +L    K      +  +   +
Sbjct: 265 YG--LENVNSPIQVAEALMRRGVKITERTEGGQPKVDKVLLDRLIKEGDPLAEAISEAKK 322

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +     +   +++ +S  R   ++  L A RT R S    P Q LP            
Sbjct: 323 WGKWEKTWVRKFLDSRDSKDRCHASINPLQA-RTARMSITGIPAQTLPSGD--------- 372

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                VR C +A EG+ +   D    E RVLA ++G++  ++AF
Sbjct: 373 -------------------WLVRRCFLADEGELMASVDYQAQELRVLAALSGDRTMIQAF 413

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G DL++                   A                                
Sbjct: 414 RDGADLHL-----------------MTARAAWP--------------------------- 429

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +  +S   ++    NF R         A +      A ++V   + + +  V +L  
Sbjct: 430 DREITKDSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQKLSR 489

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
           +L                                   ++ P GR L    V  +R+Y   
Sbjct: 490 KLQMEA--------------------------SQKGHIITPVGRRLP---VDPSRAY--- 517

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETP-DT 639
                             ++Q+ SRD+    ++   +AG+   + L +HDEI+   P D 
Sbjct: 518 -------------SALNYLIQSSSRDVTGRALIRLHEAGFTRYLRLPIHDEILASVPADK 564

Query: 640 DEFNASMLYHLMTS 653
            ++ A  +  LM  
Sbjct: 565 AQWGAQEIARLMAE 578


>gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 354

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 116/417 (27%), Gaps = 111/417 (26%)

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL + ++   +      N    S+      + L++ ++       T     A+ TGR S
Sbjct: 26  EVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLS 85

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QN+P  S                              +R   IA +G K++ AD
Sbjct: 86  SSNPNLQNIPIRSEEGN-------------------------LIRQAFIAPKGHKIISAD 120

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R+LA +A      +AF  G+D++  T  + F V   ++ +  R   K +     
Sbjct: 121 YSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGV--QEIDEQLRRKAKSINF--- 175

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
                          G++    A                                     
Sbjct: 176 -----------GIIYGISPFGLAKR------------------------------LGITI 194

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                    +   +  +        +A      +G                         
Sbjct: 195 AEAAEYINYYFSCYPEIKAYM---EKAVSIARLHGYVETL-------------------- 231

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-TK 619
               GR    RD+ N   Y+        R             Q  + DI+    +    +
Sbjct: 232 ---FGRRCFVRDINNTIPYIRQF---AERAAINAPL------QGTAADIIKRATIQLFDQ 279

Query: 620 AGY-DIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                I+L VHDE++ E   +  +  A ++  +M +       +PL+ E      + 
Sbjct: 280 LKVGKIILQVHDELLVEVEDEKVQETAKLIKDIMENAIE--ISIPLEVEIKIGDNWG 334


>gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 918

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 86/627 (13%), Positives = 167/627 (26%), Gaps = 129/627 (20%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRW-ICTLVLARSNGLPS---ALKAVGE 114
            L + +   + H    +   L   F    + +    + T + A          AL A+  
Sbjct: 403 WLGDPERPKIMH----DAKGLMRVFGEHGMSVAGVSMDTALGAYLVKPGRRTFALGALSL 458

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                      G+EL+               ++   R               +T  + + 
Sbjct: 459 EY--------LGRELVPAQESDGQLA-FGADDESQARTLMVEARTILDLGTALTARLPEV 509

Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E     L   +   G   D A    + +       +  +E  +       +
Sbjct: 510 GAEGLLTDIELPTSALLARMERAGIKADRAHLEEMERQFAGAVEQAVREAHAAVGH-EFN 568

Query: 233 SRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL-TPQAIQVFNNRMRASRSAV 288
               ++L+  LF E  L     T+T   T    L+        +   +       ++   
Sbjct: 569 LGSPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVIMLRHREQAKLRS 628

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L++++  DGR+  T     A+ TGR S      QN+P  +               
Sbjct: 629 T-VEGLIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGRA---------- 676

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                          +R   +  EG + L+ AD + IE RV+A ++ ++  + AF +GED
Sbjct: 677 ---------------IRRGFVVGEGFEALMTADYSQIELRVMAHLSEDEGLIAAFTSGED 721

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+ T     F V PA V  + R   K M   L Y            +  L +        
Sbjct: 722 LHRTVAGYVFGVEPAAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQLGIEAGEARAL 776

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            ++  E +    ++   + E           +G             +S   +      + 
Sbjct: 777 MDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLP-----DLNSDNRQRREAAERM 831

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                  G A    K   + +    ++                                 
Sbjct: 832 ALNAPIQGTAADIVKIAMLNVDRALRE--------------------------------- 858

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647
                               ++ +  ++              DEIV E    +      +
Sbjct: 859 -------------------AELTSRMLLQVH-----------DEIVLELAPGERAPVEEI 888

Query: 648 -YHLMTSNPSWAKGLPLKAEGYESKRY 673
               M +        PL       + +
Sbjct: 889 LRREMAAAAE--LRAPLTVSVGVGRDW 913


>gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 200/367 (54%), Gaps = 9/367 (2%)

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
           ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L   +
Sbjct: 5   ELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQHI 64

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
               G+ L D+  +T QR ++    + P   ++ + R+++  ++  K   L++++++DGR
Sbjct: 65  ASAFGITLPDMQASTLQRRIND-PDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADGR 123

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIIS 361
           LRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D +Q+ S
Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARS 416
             +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF   ++      Y   YAR+
Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARA 243

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     N  P    
Sbjct: 244 FNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPPGVKR 303

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
           +A  + +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q I++  
Sbjct: 304 EAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSPG 362

Query: 537 AIIARKR 543
                ++
Sbjct: 363 IAFKCRK 369


>gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 889

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 97/667 (14%), Positives = 187/667 (28%), Gaps = 148/667 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83
            ++ FA+   D             + Q   LK  LE      V     ++     VL   
Sbjct: 345 DLVGFAWSCGDK----LYATDKLDLLQEPILKNFLE-KTPLKV-----YDFKKAKVLLNR 394

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALK--AVGEALKLSSQKMEE------GKELIARFCK 135
            +L++       + +           +   +      +    +E       K+ I    K
Sbjct: 395 LDLNLQ-APAFDSRLAKYLLSTVENNEISTIASLYGQTYMVDDETFYGKGVKKAIPEREK 453

Query: 136 GETHEC-LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
              H                    E+ + D+     ++         EQ L ++   +  
Sbjct: 454 FLEHLARKVAVLVETEPVLIEKLSEHGQLDL-----LY-------DMEQPLAFVLAKMEI 501

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--E 252
            G  V       +    +V   +L QE+  L      +    ++L   LF + GL L   
Sbjct: 502 AGIKVKKETLLEMQAENEVVIEQLTQEIYEL-ADEEFNINSPKQLGVLLFEKLGLPLEYT 560

Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             T+   +T   VL     + P   ++ + R   ++     + +L + +  DG++     
Sbjct: 561 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVVSLQDWILDDGKIHTRYV 619

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               ++TGR S      QN+P                                 +R   +
Sbjct: 620 QD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFV 653

Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKD 427
              E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT +
Sbjct: 654 PEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPN 713

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K +   + Y               L ++        ++  E +   +N+   +  
Sbjct: 714 DRRNAKAVNFGVVYGIS-----DFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVR 768

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
              +    +       E      R  +  +        +    +   G A    K   + 
Sbjct: 769 EARDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQ 823

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
           L     +      ML                                             
Sbjct: 824 LDKALVEGGYQTKML--------------------------------------------- 838

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
                  +        IVL V        P ++     +L    M         +PL A+
Sbjct: 839 -------LQVHDE---IVLEV--------PKSELAAVKVLVKQTMEEAIQ--LSVPLIAD 878

Query: 667 GYESKRY 673
             E   +
Sbjct: 879 ENEGATW 885


>gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
 gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974]
          Length = 602

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 100/675 (14%), Positives = 207/675 (30%), Gaps = 159/675 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D ET         G+  Y++        FG       +       V  +    AL 
Sbjct: 37  ILGLDSETT--------GLDIYSKGFRCRTVQFG-SPEEGWVIPVERGAVFREAAIAALR 87

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAV 112
             D   V HN+ ++  V   C  + +     + + T +LA               +L+ +
Sbjct: 88  AADR-FVLHNASYDLQVFDKCLGVPMEELWPKVVDTKILAHLVDPRGRKEGGTGHSLEEL 146

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                L +   +  K L+    K E         K         +  Y   D  +   + 
Sbjct: 147 TRHY-LDADVADTVKTLMTDLAKEEKTTKANVWKK--VSLDNPRYQLYAGMDPILACRLR 203

Query: 173 KRLEPLSS--------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           ++L PL           E++L  +   +   G+ +DV     L+  + ++   +  E+  
Sbjct: 204 QKLSPLVPVSARGLVGYERDLAEVCSVMERTGFLLDVDYTRKLSTRLRLD-ESVASEIAL 262

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGL---HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
                  +    +++   L               +     +L+   K   +  +   +  
Sbjct: 263 SYGCE--NVNSTDQVADVLEQMGAWIPGRTPTGKKQVNDTLLAQLAKDGNEFARSVIDAK 320

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           +A +     ++  ++ ++ DGR   ++  L A RT R S    P Q LP           
Sbjct: 321 KAGKWRKTWVDRFLQTVDPDGRCHASINPLQA-RTARMSITEIPAQTLPAGD-------- 371

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R C +A EG+ +   D    E RVLA ++G+   ++A
Sbjct: 372 --------------------WMIRRCFLADEGELIASVDYQAQELRVLAALSGDPTMIRA 411

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F  G+DL++ T   +F     +   +                                  
Sbjct: 412 FAEGQDLHLLTARAAFGDHITKDDPE---------------------------------- 437

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                       ++    NF R         + +      A ++V   + + +  V  L 
Sbjct: 438 -----------RKYAKVVNFGRVYGGGAKTVSEQTGLGFMAAKQVVDGFDKAYPGVRVLS 486

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           ++L +   ++ +                          ++ P+GR L             
Sbjct: 487 HKLQEEAVKSGQ--------------------------IVTPTGRVLPVDQDR------- 513

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETPDT 639
                              ++Q+ SRD+  + ++   +AG+  ++ L +HDE++   P  
Sbjct: 514 ------------AYAALNYLIQSTSRDVTGKALIRLHRAGFGPNLRLPIHDEVLASVPAA 561

Query: 640 DEFN-ASMLYHLMTS 653
                A+ +  +M  
Sbjct: 562 KARWGANRIAEIMRE 576


>gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 199/367 (54%), Gaps = 9/367 (2%)

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
           ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L   +
Sbjct: 5   ELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQHI 64

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
               G+ L D+  +T QR ++    + P   ++ + R+++  ++  K   L++++++DGR
Sbjct: 65  ASAFGITLPDMQASTLQRRIND-PDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADGR 123

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIIS 361
           LRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D +Q+ S
Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARS 416
             +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF   ++      Y   YAR+
Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARA 243

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N       
Sbjct: 244 FNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLGVKR 303

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
           +A  + +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q I++  
Sbjct: 304 EAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSPG 362

Query: 537 AIIARKR 543
                ++
Sbjct: 363 IAFKCRK 369


>gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87]
          Length = 687

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/497 (15%), Positives = 152/497 (30%), Gaps = 104/497 (20%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
             + E+ L  +   + ++G  +D  +   +    D     L Q++  +   +V +    +
Sbjct: 290 YENIEKPLVRILFEMENQGIHIDENVLDEIGAKTDTILESLTQQIHEM-AHMVFNINSPK 348

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +L   L+ E  L       +T   VL   K   P    + + R + S+     +  L + 
Sbjct: 349 QLAGVLYDELNLKGGGKKRSTSAEVLEKLKGSHPIIDVLLDYR-KYSKIKSTYIEGLKKH 407

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +  D ++         ++TGR S      QN+        E                   
Sbjct: 408 IQQDSKIHTCFNQAM-TQTGRLSSSDPNLQNISVRDEQGRE------------------- 447

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R   +A +G KL+ AD + IE R+LA MA E   ++AF+ G D++  T +  F
Sbjct: 448 ------IRKAFVAQKGYKLLSADYSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIF 501

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
           +V+   VT D R + K +   + Y        +   +  L ++         +    + +
Sbjct: 502 HVSQEDVTPDMRRVAKTVNFGIVYGQT-----EFGLSQQLKISRKEAGEFMETYFASYPN 556

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
              F   + +   E+   +        R+      K+    E      +A       G A
Sbjct: 557 IHQFMNQLIDFCKENGYVETMFHR--RRMIPEINDKNFMTREFGK---RAAMNAPIQGSA 611

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
               K   + +    K+KN    ML                                   
Sbjct: 612 ADLIKIAMIRVDQAMKEKNVKSKML----------------------------------- 636

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656
                            +        +V           PD +     +++   M     
Sbjct: 637 -----------------LQIHDELIFLV-----------PDDELEVMQALVKEAMEQAME 668

Query: 657 WAKGLPLKAEGYESKRY 673
               +PLKA     + +
Sbjct: 669 --LKVPLKASINFGQSW 683


>gi|333027886|ref|ZP_08455950.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
 gi|332747738|gb|EGJ78179.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
          Length = 914

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/638 (13%), Positives = 172/638 (26%), Gaps = 131/638 (20%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWI-CTLVLARSNGLPS 107
           D    +   + L + +   V H    +   L   F    + +      T + A       
Sbjct: 389 DEDDERAFADWLGDPERPKVMH----DAKGLMRVFGEHGMTVAGVAMDTALSAYLVKPGR 444

Query: 108 ---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
              AL A+             G+EL+               ++   R             
Sbjct: 445 RTFALDALSLEY--------LGRELVPAQESDGQLA-FGADDETQARTLMVEARTILDLG 495

Query: 165 VTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             +   + +          E     L   +   G   D A    + +       +  +E 
Sbjct: 496 TALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADRAHLEEMERQFAGAVEQAVREA 555

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKK--LTPQAIQVF 277
            +       +    ++L+  LF E  L     T+T   T    L+           + + 
Sbjct: 556 HAAVGH-EFNLGSPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLML 614

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R + ++     +  L++++  DGR+  T     A+ TGR S      QN+P  +    
Sbjct: 615 RHREQ-AKLRST-VEGLIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGR 671

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQ 396
                                     +R   +  EG + L+ AD + IE RV+A ++ ++
Sbjct: 672 A-------------------------IRRGFVVGEGYEALMTADYSQIELRVMAHLSEDE 706

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF +GEDL+ T     FNV PA V  + R   K M   L Y            +  
Sbjct: 707 GLIAAFTSGEDLHRTVAGYVFNVEPAAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQ 761

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +         ++  E +    ++   + E           +G             +S 
Sbjct: 762 LGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLP-----DLNSD 816

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
             +      +        G A    K   + +    ++                      
Sbjct: 817 NRQRREAAERMALNAPIQGTAADIVKIAMLGVDRALRE---------------------- 854

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                          ++ +  ++              DEIV E 
Sbjct: 855 ------------------------------AELTSRMLLQVH-----------DEIVLEL 873

Query: 637 PDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
              +      +    M +        PL       + +
Sbjct: 874 APGEREPVEEILRREMAAAAQ--LRAPLTVSVGVGRDW 909


>gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 9/367 (2%)

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
           ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L   +
Sbjct: 5   ELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQHI 64

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
               G+ L D+  +T QR ++    + P   ++ + R+++  ++  K   L++++++DGR
Sbjct: 65  ASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGR 123

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIIS 361
           LRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D +Q+ S
Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARS 416
             +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF   ++      Y   YAR+
Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARA 243

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     +  P    
Sbjct: 244 FNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVKR 303

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
           +A ++ +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q I++  
Sbjct: 304 EATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSPG 362

Query: 537 AIIARKR 543
                ++
Sbjct: 363 IAFKCRK 369


>gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300]
 gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300]
          Length = 889

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 98/667 (14%), Positives = 190/667 (28%), Gaps = 148/667 (22%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83
            ++ FA+   D             + Q   LKE LE      V     ++     VL   
Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQEPILKEFLE-KTPLKV-----YDFKKAKVLLNR 394

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALK--AVGEALK---LSSQKMEEGKELIARFCKGET 138
            +L++       + +           +   +        L+  ++  GK +     + E 
Sbjct: 395 LDLNLQ-APAFDSRLAKYLLSTVENNEISTIANLYGQTYLADDEIFYGKGVKKAIPEREK 453

Query: 139 HECLYDRNKP----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                 R                 E+ + D+     ++         EQ L ++   +  
Sbjct: 454 FLEHLARKVAVLVETEPVLLEKLSEHGQLDL-----LY-------DMEQPLAFVLAKMEI 501

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--E 252
            G  V       +    ++   KL QE+  L      +    ++L   LF + GL L   
Sbjct: 502 AGIKVKKETLLEMQAENELIIEKLTQEIYELAG-EKFNINSPKQLGVLLFEKLGLPLEYT 560

Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             T+   +T   VL     + P   ++ + R   ++     +  L + +  DG++     
Sbjct: 561 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILDDGKIHTRYV 619

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               ++TGR S      QN+P                                 +R   +
Sbjct: 620 QD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFV 653

Query: 370 AS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKD 427
              E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT +
Sbjct: 654 PEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPN 713

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K +   + Y            +  L ++        ++  E +   +N+   +  
Sbjct: 714 DRRNAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVR 768

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
              +    +       E      R  +  +        +    +   G A    K   + 
Sbjct: 769 EARDKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQ 823

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
           L     +      ML                                             
Sbjct: 824 LDKALVEGGYQTKML--------------------------------------------- 838

Query: 608 DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
                  +        IVL V        P ++     +L    M         +PL A+
Sbjct: 839 -------LQVHDE---IVLEV--------PKSELAAIKVLVKQTMEEAIQ--LSVPLIAD 878

Query: 667 GYESKRY 673
             E   +
Sbjct: 879 ENEGATW 885


>gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG]
 gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF]
          Length = 914

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/638 (13%), Positives = 169/638 (26%), Gaps = 131/638 (20%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWI-CTLVLARSNGLPS 107
           D    +   + L + +   V H    +   L   F    + +      T + A       
Sbjct: 389 DEDDERAFADWLGDPERPKVMH----DAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGR 444

Query: 108 ---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
              AL A+             G+EL+               ++   R             
Sbjct: 445 RTFALDALSLEY--------LGRELVPAQESDGQLA-FGADDETQARTLMVEARTILDLG 495

Query: 165 VTVTREIFKRLEPLS--SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             +   + +          E     L   +   G   D      + +       +  +E 
Sbjct: 496 TALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQAVREA 555

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKK--LTPQAIQVF 277
            +       +    ++L+  LF    L     T+T   T    L+           + + 
Sbjct: 556 HAAVGH-EFNLGSPKQLQEVLFGGLNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLML 614

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +R + ++     +  L++++  DGR+  T     A+ TGR S      QN+P  +    
Sbjct: 615 RHREQ-AKLRST-VEGLIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTDEGR 671

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQ 396
                                     +R   +  EG + L+ AD + IE RV+A ++ ++
Sbjct: 672 A-------------------------IRRGFVVGEGYEALMTADYSQIELRVMAHLSEDE 706

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             + AF +GEDL+ T     FNV P  V  + R   K M   L Y            +  
Sbjct: 707 GLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQ 761

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +         ++  E +    ++   + E           +G             +S 
Sbjct: 762 LGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLP-----DLNSD 816

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
             +      +        G A    K   + +    ++                      
Sbjct: 817 NRQRREAAERMALNAPIQGTAADIVKIAMLGVDRALRE---------------------- 854

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                                          ++ +  ++              DEIV E 
Sbjct: 855 ------------------------------AELTSRMLLQVH-----------DEIVLEL 873

Query: 637 PDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
              +      +    M +        PL       + +
Sbjct: 874 APGEREPVEEILRREMAAAAQ--LRAPLTVSVGVGRDW 909


>gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
 gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093]
          Length = 960

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/617 (13%), Positives = 165/617 (26%), Gaps = 134/617 (21%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
           +     L++PI     T +                    +  +  E    I         
Sbjct: 452 MAQSAGLNVPI-PLFDTKLAGYLADPDYT--------GHTIDEYAEHFLRIDVPAVQTQA 502

Query: 140 ECLYDRNKPNHR---EAWRLFGEYCKGDVTVTREIFKRLEPLSSK------EQELWYLDQ 190
           +   D +  +     +  +  G        + R + + L+           E  +  +  
Sbjct: 503 QGTLDFDNMDDETPTQDDKDLGLQAALVSAMARHLARELQQREQYALLRCIELPVSVVLY 562

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +   G  VD     +L      E  +++  +     G   +    +K+   LF + GL 
Sbjct: 563 RMEQEGAAVDRMRLDSLLATFAEESGRME-RMAWDAAGSEFNLSSPKKIGKVLFEDMGLT 621

Query: 251 LEDLTET-----------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
               T++           T                 +  +R       +  + TL++A+N
Sbjct: 622 PLRKTKSGHYTTNAATLTTLYANAEEGSAAYVFLGAILRHRGVNKLQQI--VQTLIDAIN 679

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                  T      + TGR S      QN+P  +    +                     
Sbjct: 680 RTDGHIHTTFEQTVAATGRLSSTDPNLQNIPNRNAEGRDT-------------------- 719

Query: 360 ISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                RS  I +EG   L+ AD + +E R++A  +G++  + AF++G D +    +  + 
Sbjct: 720 -----RSAFIPAEGFDALLSADYSQVELRLMADFSGDEALIDAFKSGADFHRYVASLVYG 774

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           +    ++ DQR+  K M   L Y            +  L +               +   
Sbjct: 775 IPVDDISGDQRSHVKAMSYGLAYG-----LSSYGLSQQLGITPKEADALKQQYFRTFGKV 829

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
             +   +     E    +   G          R+    +      + +A E+        
Sbjct: 830 HEYLESLVATARERGYTETMFGR---------RRYFPALRSPNRMVREAAERAA------ 874

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                        L     G+    +     +  R         
Sbjct: 875 -----------------------------LNAPIQGSAADIMKMAMIRAERALRS----- 900

Query: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE-TPDTDEFNASMLYHLMTSNPSW 657
               Q                    IVL +HDE+V +  P   E   +++   M      
Sbjct: 901 ----QG---------------MRSRIVLQIHDELVVQLAPGEHESATALVKDAMEHAVQL 941

Query: 658 AKGLPLKAEGYESKRYR 674
           A  +PL         ++
Sbjct: 942 A--VPLDVSTGIGTDWQ 956


>gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01]
 gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01]
          Length = 682

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 113/690 (16%), Positives = 194/690 (28%), Gaps = 185/690 (26%)

Query: 1   MAT--LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M    L +D ET         G+  +     ++  A       V ++D    P   +V  
Sbjct: 145 MRQPVLGVDLETT--------GLDPHTSRPRLLSLAM---PGAVVVFDLFGVP--LEVFY 191

Query: 59  EAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
                     +V HN  F+   L           R   T +  +                
Sbjct: 192 PLFSREEGPLLVGHNLKFDLLFLLKAGVWRASGKRLWDTGLAHQVL-------------- 237

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK---- 173
            +  +M   K+L               +              Y   D  V   +++    
Sbjct: 238 HAQARMPALKDL-------APGLDKTLQTSDWGGPLSSEQVAYAGLDAAVPLVLYREQRE 290

Query: 174 -----RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                RLE +   E+        +  +G      L     +  + E   L  EL      
Sbjct: 291 RARTLRLEKVLEVERRALPAVAWMELKGVPFAPELWEEAAREAEREAEALRGELPFGV-- 348

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              +     ++  +L  E GL L D  E T         +  P   ++   R  A++   
Sbjct: 349 ---NWNSPAQVLAYLKGE-GLDLPDTREDTLAG-----YREHPLVAKLLRYR-EAAKRVS 398

Query: 289 LKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                  + +N   GR+  + Q +GA  TGR +      Q +PR                
Sbjct: 399 TYGKEWAKHLNPATGRIHPSWQQIGAE-TGRMACRKPNLQQVPRD--------------- 442

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           +R      EG+ ++ AD + IE R+ A +A E   L+AF  G+D
Sbjct: 443 --------------PALRRAFRPKEGRVMLKADFSQIELRIAAAIAKEGRMLRAFREGKD 488

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           L+  T +        +V K+ R + K +   L Y  GA+  ++ A T             
Sbjct: 489 LHALTASLVLGKPLEEVGKEDRQLAKALNFGLLYGLGAEGLRRYALT------------- 535

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A          ++++ A+ + +  +          
Sbjct: 536 -------------------------AYGVKLTLEEAQKLRDAFFRAYPALKRWHR----- 565

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
                                    + +  +++    GR               TT R  
Sbjct: 566 ------------------------SQPEGEVVVRTLLGRRR-------------TTDRYT 588

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDT-DE 641
            +            VQ    D L   +    +      G   VL VHDE+V E P+   +
Sbjct: 589 EK--------LNTPVQGTGADGLKMALALLWENRGLLWGAFPVLAVHDEVVLEAPEEGAK 640

Query: 642 FNASMLYHLMTSNPSWAKG--LPLKAEGYE 669
                L  LM        G  +P++ EG  
Sbjct: 641 EYLETLTALMRRGMEEVLGGAVPVEVEGGI 670


>gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 133/367 (36%), Positives = 200/367 (54%), Gaps = 9/367 (2%)

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
           ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L   +
Sbjct: 5   ELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQHI 64

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
               G+ L D+  +T QR ++    + P   ++ + R+++  ++  K   L++++++DGR
Sbjct: 65  ASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGR 123

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIIS 361
           LRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D +Q+ S
Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARS 416
             +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+ AF   ++      Y   YAR+
Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARA 243

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           FN+ P  VTK+QR IGKVMEL LGY GG  AF   A   GL+L+  A     N  P    
Sbjct: 244 FNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVKR 303

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
           +A  + +   E    + + +    T C+ +K+ WR  H +    W ++  A +Q I++  
Sbjct: 304 EAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSPG 362

Query: 537 AIIARKR 543
                ++
Sbjct: 363 IAFKCRK 369


>gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2]
 gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 370

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 133/367 (36%), Positives = 201/367 (54%), Gaps = 9/367 (2%)

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
           ELW LDQ IN RG C+DV LA +    V+ E+ +L    + LT   V ++   + L   +
Sbjct: 5   ELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQHI 64

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
               G+ L D+  +T QR ++    + P   ++ + R+++  ++  K   L++++++DGR
Sbjct: 65  ASAFGITLPDMQASTLQRRIND-PDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADGR 123

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIIS 361
           LRGT QF GASRTGRW+G VF P NLPRP+     +D  I  L          D +Q+ S
Sbjct: 124 LRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLTS 183

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARS 416
             +R C+IA  GKKLV++DL+ IE R+LAW+AGE WK+KAF   ++      Y   YAR+
Sbjct: 184 SALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARA 243

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           FN+ P  VTKDQR IGKVMEL LGY GG  AF   A   GL+L+  A     +  P    
Sbjct: 244 FNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVKR 303

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
           +A ++ +   E    + + +      C+ +K+ WR  H +    W ++  A +Q I++  
Sbjct: 304 EATSWYQKSVETDKTYGLSEKIFVN-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSPG 362

Query: 537 AIIARKR 543
                ++
Sbjct: 363 IAFKCRK 369


>gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591]
 gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68]
 gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591]
          Length = 878

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 96/674 (14%), Positives = 183/674 (27%), Gaps = 151/674 (22%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFER 77
             ++             + D           P +    VL++ LEN  +        ++ 
Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLENQTIK------TYDF 374

Query: 78  T---VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALK-----LSSQKMEEGK 127
               VL     + +P      + +          ++L  +                 +G 
Sbjct: 375 KRGKVLLDRKEITLPPAT-FDSRLAKYLLSTVEDNSLTTIANLYGQISLVPDEAVYGKGA 433

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           +L     +                E   L        + +              E  L  
Sbjct: 434 KLDLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLF----------DMELPLAN 483

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  V+      +    +V   +L +E+  L      +    ++L T LF E 
Sbjct: 484 VLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQ-EFNINSPKQLGTILFEEM 542

Query: 248 GLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           GL L     T+   +T   VL     + P   ++   R   ++     +  L +A+  DG
Sbjct: 543 GLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQ-ITKLQSTYVVGLQDAILEDG 601

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           ++         ++TGR S      QN+P                                
Sbjct: 602 KIHTRYVQD-LTQTGRLSSTDPNLQNIPVRLEQGR------------------------- 635

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   + S E   L+ +D + IE RVLA ++ ++  ++AF+ G D++ +T  R F +  
Sbjct: 636 LIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEK 695

Query: 422 -AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              VT + R   K +   + Y            +  L +         ++  E +   +N
Sbjct: 696 AEDVTPNDRRNAKAVNFGVVYGIS-----DFGLSNNLGITRKEAKAYIDTYFERFPGIKN 750

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +   +     +    +       E      R  +  V        +    +   G A   
Sbjct: 751 YMETIVREARDKGYVETIYKRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADI 805

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            K   + L     +      ML                                      
Sbjct: 806 LKVAMINLDKALTEAGLATRML-------------------------------------- 827

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659
                         +        IVL V        P  +      M+   M S  S   
Sbjct: 828 --------------LQVHDE---IVLEV--------PVAELETVKAMVKETMESAIS--L 860

Query: 660 GLPLKAEGYESKRY 673
            +PL A+  E   +
Sbjct: 861 SVPLIADENEGSTW 874


>gi|312074456|ref|XP_003139979.1| hypothetical protein LOAG_04394 [Loa loa]
 gi|307764861|gb|EFO24095.1| hypothetical protein LOAG_04394 [Loa loa]
          Length = 1001

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/678 (13%), Positives = 191/678 (28%), Gaps = 148/678 (21%)

Query: 20  GICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------VMPQVLKEALENTDVTIVAHN 72
           G+     +  +I  A    +      D   +           + L   L +     +   
Sbjct: 438 GLGIAIYNRDIIGIALCALNEECVYIDFRPNRISEIEIYERIETLDNILRSEQQKYI--- 494

Query: 73  SYFERTVLKACF----NLDIPI---HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
             ++                P    +  IC   L+      ++                 
Sbjct: 495 --YDLVSFSRSLRYLRGTTYPPSLFNHCICIQTLSYLAHYRAS----------DGNSAIS 542

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
            ++L+++    E    +        + A   F      D  ++  I          E + 
Sbjct: 543 FQDLVSQLTSPER-AIILRNATSRLQAAISAFICLHMHDDLLSAAIRLSSMKSVELELQS 601

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             L   I   G   D   A  L+  +  + T ++ +   ++     +     ++   LF+
Sbjct: 602 VVLFSEIETMGIAFDTNKAEILHSKLKQKLTDIEAKAYDISGIP-FNFGSAAEISQILFV 660

Query: 246 ETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
              +   +L+     +T + VL       P    +   R   S +    L +L+++  SD
Sbjct: 661 RLQIPPPNLSTGRHYSTNKFVLQQLAPNYPIINLILEWRR-ISTALTTSLPSLLKSCCSD 719

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+R        +  GR        QN+ +                              
Sbjct: 720 GRIRTNFITYSCT--GRVLTENPNVQNVQKDGIID------------------------G 753

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +RS  IA +G+ L+ +D   +E R+LA ++ +   +  F    D +     + +N   
Sbjct: 754 FSIRSLFIAPKGRILLSSDYRQLEMRMLAHLSADSQLISLFLAEGDFFEIITNK-WNTNE 812

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
               K  R   K +   + Y  G+ +                                  
Sbjct: 813 TLPVKVDRNKVKQLCYGIIYGMGSLSLS-------------------------------- 840

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                        E        +++  ++ Q+  +V    +++                 
Sbjct: 841 ------------KELGIQKQHAQQMIISFFQQFPKVRTWMDKILAVCR------------ 876

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                          +  +    GR      + +    L T + Q  R+           
Sbjct: 877 --------------ADGFVSTLLGRRRFLPQINS---MLQTESAQAERQAI------NTC 913

Query: 602 VQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPS 656
           +Q    ++    ++N  K        IV+ +HDE++ ET ++   +   ++ H MTS   
Sbjct: 914 IQGSVAELFKMALLNLQKNLLGTNSSIVMQMHDEVLVETDESSVASVVEIIKHSMTSVMP 973

Query: 657 WAKGLPLKAEGYESKRYR 674
               +PL  +    K + 
Sbjct: 974 -NLRVPLAVKISSGKNWG 990


>gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
 gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827]
          Length = 888

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 96/670 (14%), Positives = 200/670 (29%), Gaps = 130/670 (19%)

Query: 19  CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALENTDVTIVAHNSYFER 77
            G+     D  V   AF                   +  L + L +       H++    
Sbjct: 329 VGVASRESDGEVEGLAFAV-GGEGGYVRLAALTPDDETALADWLASDA-PKAVHDAK--- 383

Query: 78  TVLKACFNLDIPIHRWI-CTLVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARF 133
            +L       + +      T + A          +L  +   L+   +++   +    + 
Sbjct: 384 PLLHRLRARGLRLGGLTSDTALAAYLVRPGQRSFSLDDL--VLRHLQRELRAEEPGGGQL 441

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
              +  E    +             E    DV  T E+ +  +     + EL  L     
Sbjct: 442 SLLDEEEDESGKAATAAIVRASAVAELA--DVLDT-ELHRTGQEGLLADLELPLLALLAE 498

Query: 194 DRGY--CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
             G    VD      L         +  Q+  ++    + +    ++L+  LF E G+  
Sbjct: 499 IEGIGIAVDDEHLTGLEAHFAAGVKQAAQDAYAVIGKEI-NLGSPKQLQVVLFDELGMPK 557

Query: 252 EDLTETT---CQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
              T+T        L S       P    +  +R   +R     ++ L++A+  DGR+  
Sbjct: 558 TKKTKTGYTTDADALQSLFESTQHPFLQHLLAHR-DVTRLKTT-VDGLLKAVADDGRIHT 615

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           T     A+ TGR S      QN+P  +                              +R 
Sbjct: 616 TFHQTIAA-TGRLSSTDPNLQNIPIRTDEGRR-------------------------IRE 649

Query: 367 CVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
             +   G  +L+ AD + IE R++A ++G++  ++AF +GEDL+    +++F+V   +VT
Sbjct: 650 GFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHTFVASKAFSVPTGEVT 709

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            +QR   K M   L Y        +      L +       +  +    +    ++ + +
Sbjct: 710 AEQRRRVKAMSYGLAYG-----LSEYGLAQQLRIPAAEAREQMEAYFSRFGGVRDYLQSI 764

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            E   +    +                                             +RR 
Sbjct: 765 VEEARKKGYTETI-----------------------------------------LGRRRY 783

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           +P +     +                +     + +  +   + +    G      + QA+
Sbjct: 784 LPDLNSDNRQ-----------RREMAERMALNAPIQGSAADIIKVAMLG------VFQAL 826

Query: 606 -SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPL 663
            + ++ +  ++              DE+V E  D +      L    M +       +PL
Sbjct: 827 EASELTSRMLLQVH-----------DELVLEIADGERAAVESLVREHMGNAFQ--LSVPL 873

Query: 664 KAEGYESKRY 673
           +      + +
Sbjct: 874 EVSVGVGRSW 883


>gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302]
 gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302]
          Length = 680

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 92/664 (13%), Positives = 177/664 (26%), Gaps = 142/664 (21%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFE---RTVLKAC 83
            ++ FA+   D             + Q   LK+ LE      V     ++     VL   
Sbjct: 136 DLVGFAWSCGDK----LYATDKLELLQNPILKDFLE-KTPLKV-----YDFKKAKVLLNR 185

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           F LD+       + +                        +               +    
Sbjct: 186 FGLDLQ-APAFDSRLAKYLL---------STVENNEISTIASLYGQTYLVDDETFYGKGV 235

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGY 197
            +  P                V     + ++L            EQ L ++   +   G 
Sbjct: 236 KKAIPERETFLEHLARKVAVLVETEPVLLEKLSENGQLNLLYDMEQPLAFVLAKMEIAGI 295

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLT 255
            V       +    ++   KL QE+  L      +    ++L   LF   G  +     T
Sbjct: 296 KVKKETLLEMQAGNELVIEKLTQEIYELAG-EEFNINSPKQLGELLFENLGFPIEYTKKT 354

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL     + P   ++ + R   ++     +  L + + +DG++        
Sbjct: 355 KTGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD- 412

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS- 371
            ++TGR S      QN+P                                 +R   +   
Sbjct: 413 LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEW 447

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRA 430
           E   L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R 
Sbjct: 448 EDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRR 507

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
             K +   + Y            +  L ++        ++  E +   +N+   +     
Sbjct: 508 NAKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREAR 562

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
           +    +       E      R  +  +        +    +   G A    K   + L  
Sbjct: 563 DKGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDK 617

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                     ML                                                
Sbjct: 618 ALVAGGYQTKML------------------------------------------------ 629

Query: 611 AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYE 669
               +        IVL V        P ++      +    M         +PL A+  E
Sbjct: 630 ----LQVHDE---IVLEV--------PKSELAAIKKIVKQTMEEAIQ--LSVPLIADENE 672

Query: 670 SKRY 673
              +
Sbjct: 673 GVTW 676


>gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14]
          Length = 878

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 94/674 (13%), Positives = 181/674 (26%), Gaps = 151/674 (22%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFER 77
             ++             + D           P +    VL++ LEN  +        ++ 
Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLENQTIK------TYDF 374

Query: 78  T---VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALK-----LSSQKMEEGK 127
               VL     + +P      + +          ++L  +                 +G 
Sbjct: 375 KRGKVLLDRKEITLPPAT-FDSRLAKYLLSTVEDNSLTTIANLYGQISLVPDEAVYGKGA 433

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           +L     +                E   L        + +              E  L  
Sbjct: 434 KLDLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLF----------DMELPLAN 483

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  V+      +    +V   +L +E+  L      +    ++L   LF E 
Sbjct: 484 VLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQ-EFNINSPKQLGIILFEEM 542

Query: 248 GLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           GL L     T+   +T   VL     + P   ++   R   ++     +  L +A+  DG
Sbjct: 543 GLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQ-ITKLQSTYVVGLQDAILEDG 601

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           ++         ++TGR S      QN+P                                
Sbjct: 602 KIHTRYVQD-LTQTGRLSSTDPNLQNIPVRLEQGR------------------------- 635

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   + S E   L+ +D + IE RVLA ++ ++  ++AF+ G D++ +T  R F +  
Sbjct: 636 LIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEK 695

Query: 422 -AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              VT + R   K +   + Y            +  L +         ++  E +   +N
Sbjct: 696 AEDVTPNDRRNAKAVNFGVVYGIS-----DFGLSNNLGITRKEAKAYIDTYFERFPGIKN 750

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +   +     +    +       E      R  +  V        +    +   G A   
Sbjct: 751 YMETIVREARDKGYVETIYKRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADI 805

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            K   + L     +      ML                                      
Sbjct: 806 LKVAMINLDKALTEAGLATRML-------------------------------------- 827

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659
                         +        IVL V        P  +      M+   M S  S   
Sbjct: 828 --------------LQVHDE---IVLEV--------PVAELETVKAMVKETMESAIS--L 860

Query: 660 GLPLKAEGYESKRY 673
            +PL  +  E   +
Sbjct: 861 SVPLIVDENEGPTW 874


>gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3]
 gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3]
          Length = 878

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 101/669 (15%), Positives = 192/669 (28%), Gaps = 141/669 (21%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFER 77
             ++             + D           P +    VL++ LEN  +        ++ 
Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLENQTIK------TYDF 374

Query: 78  T---VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELIAR 132
               VL     + +P      + +          ++L  +      +S   +E     A 
Sbjct: 375 KRGKVLLDRKEITLPPAT-FDSRLAKYLLSTVEDNSLTTIANLYGQTSLVPDE-----AI 428

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
           + KG   +         H           +  +    E  ++L+ L   E  L  +   +
Sbjct: 429 YGKGAKLDLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKM 488

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL- 251
              G  V+      +    +V   +L +E+  L      +    ++L T LF E GL L 
Sbjct: 489 EIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQ-EFNINSPKQLGTILFEEMGLPLE 547

Query: 252 -EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
               T+   +T   VL     + P   ++   R   ++     +  L +A+  DG++   
Sbjct: 548 YTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQ-ITKLQSTYVVGLQDAILEDGKIHTR 606

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                 ++TGR S      QN+P                                 +R  
Sbjct: 607 YVQD-LTQTGRLSSTDPNLQNIPVRLEQGR-------------------------LIRKA 640

Query: 368 VIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVT 425
            + S E   L+ +D + IE RVLA ++ ++  ++AF+ G D++ +T  R F +     VT
Sbjct: 641 FVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVT 700

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
            + R   K +   + Y            +  L +         ++  E +   +N+   +
Sbjct: 701 PNDRRNAKAVNFGVVYGIS-----DFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETI 755

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                +    +       E      R  +  V        +    +   G A    K   
Sbjct: 756 VREARDKGYVETIYKRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADILKVAM 810

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           + L     +      ML                                           
Sbjct: 811 INLDKALTEAGLATRML------------------------------------------- 827

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLK 664
                    +        IVL V        P  +      M+   M S  S    +PL 
Sbjct: 828 ---------LQVHDE---IVLEV--------PVAELETVKAMVKETMESAIS--LSVPLI 865

Query: 665 AEGYESKRY 673
           A+  E   +
Sbjct: 866 ADENEGSTW 874


>gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150]
 gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150]
          Length = 879

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 96/663 (14%), Positives = 184/663 (27%), Gaps = 143/663 (21%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT- 78
             ++           F + +          D +     + AL +  V     N  ++   
Sbjct: 325 FEILGDNYHTEPIIGFAWGNDKQIYASTDTDLLKSDAFQTAL-SKAV-----NI-YDFKR 377

Query: 79  --VLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIA 131
             VL +   +D+P        +             S +  +   L L + ++  GK    
Sbjct: 378 SKVLLSHLGIDLPTAN-FDARLAKYLLSTVEDNELSTIARLYTDLPLETDEVVYGKGAKR 436

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              + E       +     + A  +  E                  L   E  L  +   
Sbjct: 437 AVPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHSQSEL--------LFDMELPLANVLAK 488

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G  V     + +     V   KL QE+  +      +    ++L   LF +  L L
Sbjct: 489 MEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAG-EEFNINSPKQLGVILFEKMELPL 547

Query: 252 --EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T+   +T   VL     + P   ++   R   ++     +  L + +  DG++  
Sbjct: 548 EYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQ-ITKLQSTYVLGLQDYILEDGKIHT 606

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                  ++TGR S      QN+P                                 +R 
Sbjct: 607 RYVQD-LTQTGRLSSVDPNLQNIPVRLEQGR-------------------------LIRK 640

Query: 367 CVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQV 424
             + S E   L+ +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  V
Sbjct: 641 AFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDV 700

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T + R   K +   + Y            +  L ++        N+  E +   + +   
Sbjct: 701 TPNDRRNAKAVNFGIVYGIS-----DFGLSNNLGISRKKAKEYINTYFERYPGIKAYMEN 755

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
           +     +    +       E      R  +  V        +    +   G A    K  
Sbjct: 756 VVREAKDKGYVETLFHRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADILKIA 810

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
            + L     +      ML                                          
Sbjct: 811 MINLDKALVEGGYKTKML------------------------------------------ 828

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPL 663
                     +        IVL V        P+ +      ++   M +    A  +PL
Sbjct: 829 ----------LQVHDE---IVLEV--------PNDELVAMKALVKETMEAAVELA--VPL 865

Query: 664 KAE 666
            A+
Sbjct: 866 IAD 868


>gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
 gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 90/634 (14%), Positives = 170/634 (26%), Gaps = 136/634 (21%)

Query: 57  LKEALENTDVTIVAHNSYFE---RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            KE LE T    V     ++     VL     L++       + +               
Sbjct: 6   FKEFLEKTS-LKV-----YDFKKAKVLLNRLGLNLQ-APAFDSRLAKYLL---------S 49

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                    +               +     +  P   +            V     + +
Sbjct: 50  TVENNEISTIASLYSQTYLVDDETFYGKGVKKAIPEREKFLEHLARKVAVLVETEPVLLE 109

Query: 174 RLEPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           +L            EQ L ++   +   G  V       +    +V   +L QE+  L  
Sbjct: 110 KLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAG 169

Query: 228 GLVSSSRCLEKLKTWLFLETGLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282
               +    ++L   LF + GL L     T+   +T   VL     + P   ++ + R  
Sbjct: 170 -EEFNINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQ- 227

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
            ++     +  L + +  DG++         ++TGR S      QN+P            
Sbjct: 228 IAKIQSTYVIGLQDWILDDGKIHTRYVQD-LTQTGRLSSVDPNLQNIPVRLEQGR----- 281

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                +R   +   E   L+ +D + IE RVLA ++ ++  +KA
Sbjct: 282 --------------------LIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKA 321

Query: 402 FETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F+ G D++ +T  R F +  P  VT + R   K +   + Y               L ++
Sbjct: 322 FQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGIS-----DFGLANNLGIS 376

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   ++  E +   +N+   +     +    +       E      R  +  +   
Sbjct: 377 RKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKRRRELPDINSR--NFNIRGF 434

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                +    +   G A    K   + L     +      ML                  
Sbjct: 435 ---AERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKML------------------ 473

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                                             +        IVL V        P ++
Sbjct: 474 ----------------------------------LQVHDE---IVLEV--------PKSE 488

Query: 641 EFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
                 L    M         +PL A+  E   +
Sbjct: 489 LAAVKDLVKQTMEEAIQ--LSVPLIADENEGATW 520


>gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
 gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272]
          Length = 891

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 90/658 (13%), Positives = 166/658 (25%), Gaps = 125/658 (18%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE-ALENTDVTIVAHNSYFERTVLKACFN 85
           D      A    D               +      L + +  +V H++  +   L     
Sbjct: 343 DARARALAIATADGHAAWVGVDTLDADDEAAIAGWLADAERPVVLHDAKGQLHALA-AQG 401

Query: 86  LDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
             +       T +             L  +             G +      +       
Sbjct: 402 WTVR-GLVADTAIATYLVRPDQRAYDLADLSVRYLHRELV-TTGADTGQLAFEEVDTGAD 459

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
               +                       +          E  L  +  T+   G  VD  
Sbjct: 460 VAVQRARAALDLWAVIGAELEASDSMSLLADL-------ELPLVDVLMTMESTGIAVDTD 512

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TC 259
              TL+           QE  ++    V +    ++L+  LF E G+     T+T   T 
Sbjct: 513 HLDTLHAEFTERMLGAAQEAYAVIGREV-NLGSPKQLQVVLFDELGMPRTKRTKTGYTTD 571

Query: 260 QRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
              L     K   P    +  +R   +R     +  L + +  DGR+  T     A+ TG
Sbjct: 572 ADALQGLFAKTQHPFLEHLLAHR-DVTRLRQT-VEGLQKTVAPDGRIHTTYAQTIAA-TG 628

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KL 376
           R S      QN+P  + S                            +R       G   L
Sbjct: 629 RLSSADPNLQNIPIRTESGRR-------------------------IREAFCVGPGFETL 663

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A ++ +   ++AF TGED +    A+ F+  P  +    RA  K M 
Sbjct: 664 LTADYSQIEMRIMAHLSEDAGLIEAFRTGEDFHTVMAAKVFDRDPGDIDGGLRARIKAMN 723

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L Y               L ++     V  +   + +    ++   + +   +     
Sbjct: 724 YGLAYG-----LSSYGLGQQLGISPGDAQVLMDDYFQTFGGVRDYLHGVVDEARQTGFTA 778

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
             +G          R+    +     +  +  E              R      ++    
Sbjct: 779 TILGR---------RRYLPDLQSDNRQRREMAE--------------RMALNAPIQGSAA 815

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
           +LI +   G      D G                                       ++ 
Sbjct: 816 DLIKVAMLGVDRALADAGL----------------------------GS------RMLLQ 841

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                  +VL        E    +      L    M +       +PL       + +
Sbjct: 842 VHDE---LVL--------EVAPGERDALEALVREQMAAAAD--LSVPLDVSVGVGRTW 886


>gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33]
 gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33]
 gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84]
 gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407]
 gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 05ZYH33]
 gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain
           [Streptococcus suis 98HAH33]
 gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84]
 gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407]
 gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7]
 gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1]
          Length = 878

 Score =  209 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 95/674 (14%), Positives = 184/674 (27%), Gaps = 151/674 (22%)

Query: 28  VCVIL--------FAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFER 77
             ++             + D           P +    VL++ LE+  +        ++ 
Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLESQTIK------TYDF 374

Query: 78  T---VLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALK-----LSSQKMEEGK 127
               VL     + +P      + +          ++L  +                 +G 
Sbjct: 375 KRGKVLLDRKEIKLPPAT-FDSRLAKYLLSTVEDNSLTTIANLYGQTSLVPDEAVYGKGA 433

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           +L     +                E   L        + +              E  L  
Sbjct: 434 KLDLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLF----------DMELPLAN 483

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
           +   +   G  V+      +    +V   +L +E+  L      +    ++L T LF + 
Sbjct: 484 VLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQ-EFNINSPKQLGTILFEDM 542

Query: 248 GLHL--EDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           GL L     T+   +T   VL     + P   ++   R   ++     +  L +A+  DG
Sbjct: 543 GLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQ-ITKLQSTYVVGLQDAILEDG 601

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           ++         ++TGR S      QN+P                                
Sbjct: 602 KIHTRYVQD-LTQTGRLSSTDPNLQNIPVRLEQGR------------------------- 635

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R   + S E   L+ +D + IE RVLA ++ +Q  ++AF+ G D++ +T  R F +  
Sbjct: 636 LIRKAFVPSLENSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADIHTSTAMRVFGIEK 695

Query: 422 AQV-TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           A+  T + R   K +   + Y            +  L +         ++  E +   +N
Sbjct: 696 AEYVTPNDRRNAKAVNFGVVYGIS-----DFGLSNNLGITRKEAKAYIDTYFERFPGIKN 750

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +   +     +    +       E      R  +  V        +    +   G A   
Sbjct: 751 YMETIVREARDKGYVETIYKRRRELPDINSR--NFNVRNF---AERTAINSPIQGSAADI 805

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            K   + L     +      ML                                      
Sbjct: 806 LKVAMINLDKALTEAGLATRML-------------------------------------- 827

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAK 659
                         +        IVL V        P  +      M+   M S  S   
Sbjct: 828 --------------LQVHDE---IVLEV--------PVAELETVKAMVKETMESAIS--L 860

Query: 660 GLPLKAEGYESKRY 673
            +PL A+  E   +
Sbjct: 861 SVPLIADENEGSTW 874


>gi|194668164|ref|XP_601658.4| PREDICTED: polymerase (DNA directed) nu [Bos taurus]
          Length = 975

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 93/655 (14%), Positives = 192/655 (29%), Gaps = 145/655 (22%)

Query: 57  LKEALENTDVTIVAHNSY-FERTVLKACFNLD----IPIHRWICTLVLARSNGLPS---A 108
           L+E L      ++  N+  F RT L+   +      +     +   + A          +
Sbjct: 301 LREVLRRK-RPVICFNAKDFVRTALQLFGDDGSWKCVAGFVGLDPRIAAWLIDPSDAAPS 359

Query: 109 LKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            + +  + L   +        L      G +     ++              +    + V
Sbjct: 360 FEDLVAKYLGNPT-------TLTVNSMHGNSSRKTVNQTVRAKLRVLHRLTMHLCSQLQV 412

Query: 168 T--REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
               ++F  LE        L  +   +      V+      ++ ++     +L+QE   +
Sbjct: 413 CGLWQLFWTLE------LPLIPILAVMESHRIRVNKEEMERMSALLGSRLKELEQEAHFV 466

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHL-------EDLT----ETTCQRVLSSNKKLTPQAI 274
                       +L+  LF +  LHL                +T    L++ + L P   
Sbjct: 467 AG-EQFLITSNHQLREILFGKLRLHLLRPQDASPATGLRRLPSTSGAELNALQDLHPLPR 525

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +   R    +     ++ L+ A    G +  T    G + +GR S      Q + +   
Sbjct: 526 IILEYRQ-VHKIKSTFVDGLL-ACMKKGSVSSTWNQTG-TVSGRLSAKHPNIQGISKHPI 582

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
              +             S       +S   R+  ++SEG   + AD + IE R+LA ++G
Sbjct: 583 QITK-----------PQSFKGEEDELSISPRTAFVSSEGYTFLAADFSQIELRILAHLSG 631

Query: 395 EQWKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +   LK F+    +D++ T  ++  +V+P +VT   R   K +  A+ Y           
Sbjct: 632 DPELLKLFQESERDDVFSTLTSQWKDVSPERVTHADREQTKKVVYAVVYG---------- 681

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                                                   A           R  +++ Q
Sbjct: 682 ----------------------------------AGKERLAACLGVPVREAARFLESFLQ 707

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           K+ ++ +          +  + G                        +    GR      
Sbjct: 708 KYKKIKDF---TQATVARCQQTGY-----------------------VESIMGRRRPLPR 741

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------YDIV 625
           +   R++      Q  R+          +VQ  + D+    M+    A          ++
Sbjct: 742 I---RAHDPQLRAQAERQAA------NFVVQGSAADLCKMAMIRIFTAMATSPTLTARLL 792

Query: 626 LTVHDEIVCETPDTDEFNASMLYH-LMTS-----NPSWAKGLPLKAEGYESKRYR 674
             +HDE++ E  D+     + L    M +            +PLK      + + 
Sbjct: 793 AQIHDELLFEVEDSQVPEFTALVQGTMEALQHVPALELQLQVPLKVSLSAGRSWG 847


>gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T]
          Length = 714

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 147/671 (21%), Positives = 219/671 (32%), Gaps = 149/671 (22%)

Query: 5   FIDFETRSP---------------------IDLTKCGICKYAEDV--CVILFAFGFDDHP 41
             DFET S                        +   G   YAE     ++   +   D  
Sbjct: 36  SFDFETYSEAGFVINPETGKVHTAAKTGNKNGIALVGTPVYAEHPSTEILCLYYDLKDGK 95

Query: 42  V--ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT----VLKACFNLD-IPIHRWI 94
                         P  L E + N    I A N  FE      VL        + + +  
Sbjct: 96  GRRAYIP---GGPKPTDLIEHIANGG-PIAAWNITFEFWIWNMVLAKREGWPWLQLEQCY 151

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY---DRNKPNHR 151
           C +  AR   LP +L A  +ALK S  K ++GK+LI + C+  +                
Sbjct: 152 CDMAKARRFSLPGSLDAAAQALKTSP-KDKKGKQLINKLCRPVSATKARPLPRWTLYTAP 210

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           + +     YC  DV     +      ++  E+E W  DQ IN RG  VDV        IV
Sbjct: 211 QDYSDLYAYCDQDVKSEDHVSALTPDMTPSERETWLADQRINARGVQVDVESLDNALDIV 270

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           D    +   EL ++T G V S   + K+  +L    G  + +LT  +    L     L P
Sbjct: 271 DQTTRRFTMELAAITNGAVGSVSEVAKMTDFL-AGLGCRMHNLTADSVSEALER-DDLNP 328

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            A +V   R   + + V KL +L   ++SDGRLR    F GA  TGRWS      QNL  
Sbjct: 329 TARRVLEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQNLTS 387

Query: 332 PSRSHEEL----------------------------------------------DQIITH 345
                +                                                D    +
Sbjct: 388 KGPKSKTCNGCGRIVGKACTIEVMGATGLCPECGGNEWTDNKDWTVDAVRWALKDLTHRN 447

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
           L   I    DP+ ++S C+R   IA+ GKK V  D + IEA VLA +A  +W+L+ F T 
Sbjct: 448 LDLIIAIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRLEVFRTH 507

Query: 406 EDLYVTTYARSFNVAPAQV----------TKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
             +Y  + ++   V   ++             ++++GKV ELA GY G   A++   +  
Sbjct: 508 GKIYEMSASKISGVPFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGAWKAFGAEA 567

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
               +                                           ++    WR    
Sbjct: 568 HFADD----------------------------------------DEMKKAILGWRDASP 587

Query: 516 RVSELW---NELHQAFEQTIENGK---------AIIARKRRDVPLVYMKKDKNNLILMLP 563
            + E W           +  +             +   K   V  +      + L   LP
Sbjct: 588 EIVEFWGGQYRRDPFTRKWTKEYFGLEGAAIMAILNPGKCYAVHDITYAVHDDVLYCRLP 647

Query: 564 SGRSLVYRDVG 574
           SGR L Y    
Sbjct: 648 SGRFLQYHQPR 658


>gi|4105277|gb|AAD02338.1| putative DNA polymerase [Homo sapiens]
          Length = 579

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/534 (14%), Positives = 164/534 (30%), Gaps = 122/534 (22%)

Query: 167 VTREIFKRLEPLSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +T ++  +L+     +        L  +   +      V+       + ++     +L+Q
Sbjct: 40  LTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQ 99

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKL 269
           E   +            +L+  LF +  L             L +  +T    L++ + L
Sbjct: 100 EAHFVAG-ERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTVSEALNALRDL 158

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P    +   R    +     ++ L+ A    G +  T    G + TGR S      Q +
Sbjct: 159 HPLPKIILEYRQ-VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGI 215

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
            +                  +T  P          R+  ++S+G   + AD + IE R+L
Sbjct: 216 SKHPIQITTPKNFKGKEDKILTISP----------RAMFVSSKGHTFLAADFSQIELRIL 265

Query: 390 AWMAGEQWKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
             ++G+   LK F+    +D++ T  ++  +V   QVT   R   K +  A+ Y  GA  
Sbjct: 266 THLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVY--GAGK 323

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            + +A+  G+ +                                             +  
Sbjct: 324 ER-LAACLGVPIQ-----------------------------------------EAAQFL 341

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           +++ QK+ ++ +       A  Q  + G  +                          GR 
Sbjct: 342 ESFLQKYKKIKDF---ARAAIAQCHQTGCVVSI-----------------------MGRR 375

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKA 620
                +    ++      Q  R+          +VQ  + D+    M++           
Sbjct: 376 RPLPRIH---AHDQQLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTL 426

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
              +V  +HDE++ E  D      + L           + +PLK      + + 
Sbjct: 427 TARLVAQIHDELLFEVEDPQIPECAALVR---RTMESLEQVPLKVSLSAGRSWG 477


>gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159]
 gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159]
          Length = 878

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/652 (14%), Positives = 177/652 (27%), Gaps = 139/652 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
               + D            +   + KEAL             ++     VL +   +D+P
Sbjct: 337 IGLAWGDDQAIYATTDTSLLTHDLFKEALSKP--IKT-----YDFKRGKVLLSHLGIDLP 389

Query: 90  IHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 + +             S +  +   L L +     GK       +         
Sbjct: 390 TAS-FDSRLAKYLLSTVENNNISTIARLYTDLPLETDDDVYGKGAKRAIPEKNVLLSHLA 448

Query: 145 RNKP--NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
           +        E            + +              E  L  +   +   G  V   
Sbjct: 449 KKISVLLASEEPMRQKLSANDQLDLLF----------EMELPLANVLAKMEIAGISVRKE 498

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---T 257
               + +  ++E   L QE+  L      +    ++L   LF + GL L     T+   +
Sbjct: 499 TLQDMERANEIELQALTQEIYDLAG-EAFNINSPKQLGVILFEKLGLPLSATKKTKTGYS 557

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL      +P   ++   R   ++     +  L ++++ DG++         ++TG
Sbjct: 558 TAVDVLERLAHRSPIVAKILEYRQ-IAKLQSTYIIGLQDSISFDGKIHTRYLQD-LTQTG 615

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376
           R S      QN+P                                 +R   +   +   L
Sbjct: 616 RLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWKESVL 650

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435
           + +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  VT + R   K +
Sbjct: 651 LSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 710

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y               L ++  A      +  E +   +N+   +     +    
Sbjct: 711 NFGVVYGIS-----DFGLANNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYV 765

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           +       E      R  +  +        +    +   G A    K   + L    K  
Sbjct: 766 ETLFHRRRELPDINSR--NFNIRSF---AERTAINSPIQGSAADILKVAMIHLDQALKKG 820

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
           +    ML                                                    +
Sbjct: 821 DYQSRML----------------------------------------------------L 828

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                   IVL V        P+ +      L    M S       +PL A+
Sbjct: 829 QVHDE---IVLEV--------PNAELEAIQKLVKETMESAIE--LSVPLVAD 867


>gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
 gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595]
          Length = 898

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/660 (13%), Positives = 177/660 (26%), Gaps = 138/660 (20%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
            + F   P  +                L + +V  + H+   +             +   
Sbjct: 354 GYVFGGEPALI-----SEEDSAAFSALLSDPNVGKIGHSMKVQIHAW---LGEGYTLAGI 405

Query: 94  I-CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           +  T + A                      + +    I      +    +    +     
Sbjct: 406 VGDTEIDAYLLHPDQR--------TYDFTDLVQRYLAIDLGGGAQDTLGIGLDGEIVDDL 457

Query: 153 AWRLFGEYCKGDVTV-TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           A R    +   D      E  ++ + L   E  +  +   +  RG  VD      L+   
Sbjct: 458 AARAVATHDLRDAFARALETEEQSDALREMELRVCDVLARMEQRGIAVDADQLARLHADF 517

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSSN-- 266
           D    +   +          +    ++L+  LF + GL     T++   T    L     
Sbjct: 518 DARVNQAATQAWEAIGDSSVNLSSPKQLQAVLFDQLGLPKTKKTKSGYTTNADALEQLLV 577

Query: 267 -----KKLTPQAIQ-----VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
                +     A Q     +  +R          +  L  ++  D R+R T Q   A+ T
Sbjct: 578 KISMREDDQALAGQNFLTGLLAHRDAIKLRQS--VEGLQRSLGDDQRIRTTYQQTVAA-T 634

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-K 375
           GR S      QN+   +                              +R   +  +G   
Sbjct: 635 GRLSSTDPNLQNIHARTEEG-------------------------QKIREVFVPGDGYDY 669

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD + IE R++A ++G+   + AF  G DL+    +R F VA ++VT  QR+  K M
Sbjct: 670 LMTADYSQIEMRLMAHLSGDAELIVAFNAGADLHNYVASRVFGVAESEVTPAQRSKIKAM 729

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              L Y            +  L +         +     +   + +   +     +    
Sbjct: 730 SYGLVYG-----LSAFGLSAQLKIPVPEAQNLMDGYFSRFGRVKEYLDGLVAQARKDGFT 784

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
              +G          R+    +S    ++ ++ E+   N              +      
Sbjct: 785 QTLLGR---------RRYLPELSSTNRQVRESAERMALN------------APIQGSAAD 823

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
              I ML   R L    + +                                      ++
Sbjct: 824 IIKIAMLNVERELAAAQLSSRV------------------------------------LL 847

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
                   +VL        E   ++      +    M +   W   +PL       + +R
Sbjct: 848 QVHDE---LVL--------EVAASEAEQVEAIVREQMGNA--WELSVPLSVGVGIGRNWR 894


>gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6]
 gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6]
          Length = 628

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 104/693 (15%), Positives = 195/693 (28%), Gaps = 140/693 (20%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHP----VELWDCVH----DPVMPQVLKEALENTDV 66
           +LT  G         +   +    + P    V   D          +   L   LEN  +
Sbjct: 38  NLTATGPDPLCH--EIQRISLALPNAPSSSTVYTVDIADRPELKESIIGDLAGLLENGRI 95

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA-------RSNGLPSALKA-VGEAL-K 117
               H+S F  + ++A     +        ++ +                K    + L  
Sbjct: 96  KKTLHDSKFVLSFIRARAGRKLNFCSIFDVMLASQICWSGYYYLTPSGNPKNPWTKRLVD 155

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            S   + E    I    +G   +        +   A  L     +    +          
Sbjct: 156 HSLASLAERHLGIILDEEGCPAQGAAALLPLHDILADLLAKNDLQRVADLEFR------- 208

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                         +   G  +D + A  L    + E       ++         +   +
Sbjct: 209 -------AAIALVEMEISGIGLDSSGARDLIDQEEDEIIDQIWRMQDEAERKGFVTVSFD 261

Query: 238 KLKTWLFLETGLHLEDLT---------ETTCQRVLSSNKKLT-PQAIQVFNNRMRASRSA 287
             +   +L      + +            T   VL S        A  +   R  +    
Sbjct: 262 GKRLCCYLNPDRQEDVMAFLAKRGYRPANTKAEVLKSLAAAGCSFAEALMRYRHLSYNLL 321

Query: 288 VLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              LN  +E ++  DGR+      + +  TGR S      Q +PR               
Sbjct: 322 --FLNKWLEKVHPLDGRVHPQYFQIPS-STGRISSRHPNAQQIPRRGDD----------- 367

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                         +  +R     + GK+ V ADL+ IE R++A ++G++   +AF  G 
Sbjct: 368 --------------APAIRRLFRPAAGKRYVKADLSNIELRIMARISGDEAMQEAFIKGI 413

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHL 465
           DL+  T +R       +VT  QR   K M   L Y G AK+ Q ++ S  G  +      
Sbjct: 414 DLHRLTASRISGTPFEEVTDSQRQAAKAMNFLLIYGGSAKSLQWRILSDYGEFICLDETE 473

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
            +       +     + +                                 +S++   + 
Sbjct: 474 ERLERFFCSYPGVREWQKMQ-------------------------------LSQMSYTMQ 502

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
             F   +    ++     R +                  GR  ++   G   +       
Sbjct: 503 HHFHNCVRGFFSLPLTATRTI-----------------LGRRRIWPRFGAGITASK---- 541

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDT-D 640
                     ++     Q    D++   M    +        I+ ++HDEI+ E P+   
Sbjct: 542 ---------FQMYNTPCQGTGADLIKLVMAEVYEKLSDEEARIIGSIHDEIILEVPEDRA 592

Query: 641 EFNASMLYHLMTSN-PSWAKGLPLKAEGYESKR 672
           E  A+ L  +M          +P+KAE    + 
Sbjct: 593 EEYAARLKEIMERIGSEMLYPVPVKAEAKVMRN 625


>gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
 gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Bacillus pumilus ATCC 7061]
          Length = 744

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 102/710 (14%), Positives = 197/710 (27%), Gaps = 180/710 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVIL-FAFGFDDHPVELWDCVHDPVMP------- 54
            +  D ET         G+  +  +  ++                  H  ++P       
Sbjct: 136 EIVFDVETT--------GVDVW--NDYIVGHVITAIKADVHAYIPTRHKTILPQLSRDLV 185

Query: 55  -QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALK 110
            + L+   E+  V  +AHN+ F+  +L     + +    W  T    R         ALK
Sbjct: 186 NETLRPFYEDPTVGKLAHNAKFDIHMLDR-EGIKLRGLTW-DTQEAMRLLNENEPSFALK 243

Query: 111 AV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            +  + L++ S    +    I                  +  +   +   Y   D  VT 
Sbjct: 244 NLVTKYLRIESSTYGDLFGKIGF----------------DEVDDLEIALAYAAKDGDVTL 287

Query: 170 EIFKRLEPLSSKEQEL-----------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++        +K  E+             + Q +   G+ +D+  A    + +     +L
Sbjct: 288 KLRNFQREHLAKMPEVLRYYETVEVPLISVVQQMETTGFDIDLDYAEEYGRELKSGLDRL 347

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
             EL      +  +     +LK  L   TG   E L  T  ++VL    K  P   ++  
Sbjct: 348 YDELIEELGDV--NINSPAQLKPALERVTG---ESLASTDAKKVLKPLAKKYPVVKKLLE 402

Query: 279 NRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASRTGRWS--GCVFPPQNLPRPSRS 335
               + +     +N L E ++   G+L       GA +TGR+S  G     QN P+ +  
Sbjct: 403 Y-KDSFKLYSTYINALPELIDQKTGKLYTNFNPNGA-KTGRFSSGGTGVNLQNQPKKA-- 458

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                        R   +A EG  ++  D +  E R LA+   +
Sbjct: 459 -----------------------------RKLFVAPEGYAILGGDWSQQEYRCLAYFTQD 489

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
              +  +  G+DLY +  A  F     +                 Y              
Sbjct: 490 PKLVDNYFRGDDLYASIAAEVFGKPIEECGD-----------GSVY-------------- 524

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                             +                             ++   ++ ++  
Sbjct: 525 -----------------RKQAKVIMLAVAYGGGANMLKDAIGVEKHEAQKFLDSFFERFP 567

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            V E      +  ++                           + +     R     D   
Sbjct: 568 VVKEWVESNQKFVKK------------------------HGFVWMDHLQ-RKRRLPDAK- 601

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----------GYDIV 625
           +RS     +   T       + T   VQ  +       M+   +            + + 
Sbjct: 602 DRSAKGHYSAVFT-------QSTNARVQGSAAIQTKATMIALQELCDRKTAEGRGEWRLW 654

Query: 626 LTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             VHDE +   PDT  + +      +M +   +   +P K +   S+R+ 
Sbjct: 655 CVVHDEALLLVPDTLTQQDVKDFEDVMVNTYVFG-NIPNKTDIEISRRWG 703


>gi|153792006|ref|NP_001093496.1| DNA polymerase nu [Danio rerio]
 gi|108735435|gb|ABG00195.1| DNA polymerase nu [Danio rerio]
          Length = 1146

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/617 (12%), Positives = 174/617 (28%), Gaps = 133/617 (21%)

Query: 77   RTVLKACFNL---DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
            RTVL+   +L    +   + +   + A       +  +      LS        +     
Sbjct: 610  RTVLRHFRDLSWTQVLGCQVMDPQIAAWLLDPADS--SSCFQTLLSKHYT---HQFTPTT 664

Query: 134  CKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
             +    +    +   N     +L  E  Y       T+ +++        EQ++  +   
Sbjct: 665  LQPVLEQAKVTQVISNLSLLHKLMEELHYKLR----TQGLWQLYS---GIEQKMIPVLAA 717

Query: 192  INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET---- 247
            +      VD       ++++  +  +L+QE                +L+  LF +     
Sbjct: 718  MESYKMHVDKEALKKTSEMLGSKLKQLEQEAHQAAGQK-FLVSSSAQLRLILFEKLRLHE 776

Query: 248  ---GLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
                  L    +   +T +  L   +KL P    +   R    +     ++ ++    + 
Sbjct: 777  LCENKKLPKTVKQQQSTSETALLQLQKLHPLPKIILEYRQ-IHKIKTTFVDGILS--CTR 833

Query: 302  GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
                 +     ++ +GR S      Q LP+          +   +            I++
Sbjct: 834  KTFISSTWNQTSTVSGRLSAKHPNFQALPK----------LPLQISKKQYIHGKASDIVT 883

Query: 362  DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-DLYVTTYARSFNVA 420
               R+  I  EG   + AD   +E R+LA ++ +   L+ F++ E D +    A+   V+
Sbjct: 884  VHPRAMFIPREGWTFLSADFCQVELRLLAHLSADPQLLRIFQSPEADAFTMLAAQWKGVS 943

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              +V+ + R   K +                                             
Sbjct: 944  EDRVSLEDREQAKRIV-------------------------------------------- 959

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
            +           +           R + ++ + +  V        Q  +           
Sbjct: 960  YSVVYGAGRERLSGILGVSAEEASRFQDSFLKTYREVPAFIQHTIQHCQS---------- 1009

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                            +  +    GR      + +    L     Q  R+          
Sbjct: 1010 ----------------HGFVRSIMGRRRFLPHIHSADWSLRN---QAERQA------VNF 1044

Query: 601  IVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTS 653
            ++Q  + D+    M+              +V  +HDE++ E   +     A+++   M S
Sbjct: 1045 VLQGSAADLAKLAMIRICSQVSSDSQTARLVAQIHDELLFEVEISQLDQFAALVKKTMES 1104

Query: 654  N--PSWA---KGLPLKA 665
                 +      +PLK 
Sbjct: 1105 LQHIEYLNVNLSVPLKV 1121


>gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 681

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 127/378 (33%), Gaps = 54/378 (14%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            A         +++   D    +  K+  E+ ++  V+ +   +  VL     ++I    
Sbjct: 338 IAIKSPSSKTFIYN--PDQKFVENFKKYFEDENINKVSFDIKEDI-VLFNKLGIEINF-P 393

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           +  T+++        +   +         K      L       E         K     
Sbjct: 394 YDDTMLMHYLIDPSRSSYDL---------KTFSQAFLKYEVLNEEDLLGKGRNKKSYKDL 444

Query: 153 AWRLFGEY------CKGDVT--VTREIFKR--LEPLSSKEQELWYLDQTINDRGYCVDVA 202
           + +  G+Y         D    +T ++ +    E     E +L  +   +   G+  D  
Sbjct: 445 SEKELGKYLSSIINAIEDSLDILTDKLKELSMYELYKDCEIKLSKVLAEMEITGFICDKN 504

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
               +   V +E   L++ +  L      +    ++L   LF +  L +   T+   +T 
Sbjct: 505 ELEKIKDEVSLELEDLEKVIYELAGS-EFNINSPKQLSIILFEDLELPIIKKTKTGYSTD 563

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            +VL   +   P   ++   R    +     L +L E ++ DGR+R T +    + TGR 
Sbjct: 564 AKVLEKLRDKHPIIGKIERYR-EMYKLKSTYLESLEECIDEDGRIRSTFKQNV-TATGRL 621

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S      QNLP  +    +                         +R    A + K L+ A
Sbjct: 622 SSTEPNLQNLPIRTEEGRK-------------------------IRKAFKADKDKVLIDA 656

Query: 380 DLAGIEARVLAWMAGEQW 397
           D + IE RVLA +A ++ 
Sbjct: 657 DYSQIELRVLAHLANDKK 674


>gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1]
          Length = 537

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 98/630 (15%), Positives = 188/630 (29%), Gaps = 120/630 (19%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115
           L + L + DV   AH+       L       +       T + A               A
Sbjct: 10  LGDWLADADVPKAAHDVKAVLHAL-RSRGWSLAGLT-SDTALAAYLARPGQRTFDLADLA 67

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L+   +++   +    +       +    +       A     E     +          
Sbjct: 68  LRYLRRELRTEEPADGQLSLLGGADEADAQAAQQEMLAASAIAELADA-LDTELAERGGT 126

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           E L+  E  L ++       G  VD      L      +  +  Q    +    + +   
Sbjct: 127 ELLADLELPLAFVLADCEAAGIAVDSETLSDLESDFGGQVREAAQNAYRVIGKEI-NLGS 185

Query: 236 LEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLK 290
            ++L+  LF E  +     T+T   T    L S  +         +  +R  A+R  V  
Sbjct: 186 PKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLYEQTGHEFLQFLLQHR-DATRLKVT- 243

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           ++ L++++  DGR+  T     A+ TGR S      QN+P  + +               
Sbjct: 244 VDGLIKSVADDGRIHTTYSQTIAA-TGRLSSTDPNLQNVPIRTAAGRR------------ 290

Query: 351 TSDPDPLQIISDCVRSCVIASEG------KKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                        +R   +   G       +L+ AD + IE R++A ++ ++  ++AF +
Sbjct: 291 -------------IRDAFVVGTGPEGGAYAELMTADYSQIEMRIMAHLSEDEALIEAFRS 337

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
             D +  T AR F V  A V+ +QRA  K M   L Y            +  L ++T   
Sbjct: 338 QHDFHAETAARVFGVEAAGVSVEQRAKIKAMNYGLAYG-----LSAYGLSGQLRISTDEA 392

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
               +     +    ++   + +   +                                 
Sbjct: 393 KGLMDDYFAGFGGVRDYLAGVVDQARKDGYT----------------------------- 423

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                       A I  +RR +P +     +                +     + +  + 
Sbjct: 424 ------------ATILGRRRYLPDLTSDNRQ-----------RREMAERMALNAPIQGSA 460

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
             + +    G +       A+S + L   M+          L VHDE+V E  D +    
Sbjct: 461 ADIIKVAMLGVRR------ALSAEGLRSRML----------LQVHDELVLEVADGERETC 504

Query: 645 SMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             L    M +       +PL+      + +
Sbjct: 505 EALVRREMAAAAD--LSVPLEVSVGYGRSW 532


>gi|145346862|ref|XP_001417901.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578129|gb|ABO96194.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 671

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/501 (12%), Positives = 140/501 (27%), Gaps = 138/501 (27%)

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE- 252
             G   D   A    +  +    +L++E +      + +    +++   L+ +  L    
Sbjct: 253 HHGVGFDRTRADEQRRAANRRVEELEREAQKCIGVDI-NLASAQQVADVLYNKLKLPTPS 311

Query: 253 ----DLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS-RSAVLKLNTLVEAMNSDGR 303
                 +++    T   VL S  K    A  V N+R     R+     +     + +DGR
Sbjct: 312 AHAMKGSKSSHLSTSVEVLQSLVKHHHFAQIVLNHRGALKERAMCDNYDK-SAVIAADGR 370

Query: 304 LRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            R   Q+    + TGR S      Q + R +                             
Sbjct: 371 ARIHTQWNNTKTATGRLSSSHPNIQQVGRGTM---------------------------- 402

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R+C +A  G+  + AD + IE RVLA ++G+   +                       
Sbjct: 403 --RNCFVAPTGRTFIAADYSQIELRVLAHLSGDDRLISLLR------------------- 441

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                     K       +  G                          +  +      + 
Sbjct: 442 --------QAKGDVFVAIWNAGKG---------------LPLDAPAEKSTRDIAKRTAYG 478

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
               ++    A +     +  +    A+ +   +V++    + +  ++  + G   +   
Sbjct: 479 IVYGQHATGLAEKLGVPKSEAQGYIAAFHRAFPKVNQW---ITRVLQRAEQTGAVTLPM- 534

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                SGR      + +      +  ++         +    I+
Sbjct: 535 ---------------------SGRHRALPKIHSKVFSERSEAQR---------QAVNTII 564

Query: 603 QAVSRDILAEGMMN------------------ATKAGYDIVLTVHDEIVCETPDTDEFNA 644
           Q  + D++   M+                     K    +V  +HDE++ E  +      
Sbjct: 565 QGTAADMMKTAMLRWTSAVGAGRFANDVAPGSVNKKRVTLVAQIHDELLFEVDEDYVPEC 624

Query: 645 SM-LYHLMTSNPSWAKGLPLK 664
           +  + ++M +    A   P+K
Sbjct: 625 ARAVKNVMENAIKLAVPTPIK 645


>gi|194209373|ref|XP_001489138.2| PREDICTED: polymerase (DNA directed) nu [Equus caballus]
          Length = 900

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 97/660 (14%), Positives = 184/660 (27%), Gaps = 137/660 (20%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLAR 101
            H      VL + L+     ++  N+  F RTVL   F  D               + A 
Sbjct: 298 AHSQFARDVLFQILKCK-CPVICFNAKDFVRTVL-QFFGDDGSWKHVADFVGLDPRIAAW 355

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY- 160
                        + +    K  E    +              RN  N      L   Y 
Sbjct: 356 LIDPS----DAAPSFEDLVAKYLENSITVKVSSTY----GNSSRNIVNQNVCANLRILYR 407

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
               +    +I+   +   + E  L  +   +      V+       + ++     +L+Q
Sbjct: 408 LTMGLCSQLKIYGLWQLFCTLELPLIPILAVMESHNIQVNKDEMERTSAVLGSRLKELEQ 467

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGL-------HLEDLTE----TTCQRVLSSNKKL 269
           E   +            +L+  LF +  L        L         +T + +L+  +  
Sbjct: 468 EAHFVAG-EQFLITSNNQLREILFGKLKLHLLRPRETLPKTGLQGHLSTSEAMLNVLQNF 526

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P    +   R    +     ++ L+ A    G +  T    G + TGR S      Q +
Sbjct: 527 HPLPKIILEYRQ-VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKRPNIQGI 583

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
            +      +           +T  P          R+  ++SEG   + AD + IE R+L
Sbjct: 584 SKHPIQITKPQNFKGKEDDILTISP----------RTMFVSSEGHTFLAADFSQIELRIL 633

Query: 390 AWMAGEQWKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           A ++G+   LK F+    +D++ T  ++  ++    VT  +R   K +  ++ Y      
Sbjct: 634 AHLSGDPELLKLFQESERDDVFSTLTSQWKDIPSECVTHVEREQTKKVVYSVVY------ 687

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                                                        A           R  
Sbjct: 688 --------------------------------------GAGKERLAACLGVTVQEAARFL 709

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + + QK+ ++ +          +  + G                             GR 
Sbjct: 710 E-FLQKYKKIKDF---AQATIARCHQTGYVASI-----------------------MGRR 742

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------- 620
                +   R+       Q  R+          +VQ  + D+    M++   A       
Sbjct: 743 RPLPRI---RAQDQQLRAQAERQA------VNFVVQGSAADLCKMAMIHIFAAVATSPTL 793

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT-----SNPSWAKGLPLKAEGYESKRYR 674
              +V  +HDE++ E  D+     S L    M              +PLK      + + 
Sbjct: 794 TARLVAQIHDELLFEVEDSQVPEFSALVRGTMESLQHVQALELQLQVPLKVSLSAGRSWG 853


>gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1]
 gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1]
          Length = 1040

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 105/674 (15%), Positives = 194/674 (28%), Gaps = 142/674 (21%)

Query: 37   FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
            F +  V +      P    VL++     + T+V +N+   R  L   +  ++        
Sbjct: 469  FREEAVLVTPSTLRPESENVLRDFFAAENRTVVVYNAKALRHAL-RAYGWELS-GTVRDV 526

Query: 97   LVLARSNGLPSAL---KAVGEALK---LSSQKMEEGK------------------ELIAR 132
             +L       ++     AV E L    +  +  + GK                     A 
Sbjct: 527  NLLDYLADPDASRLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAV 586

Query: 133  FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-----FKRLEPLSSKEQELWY 187
                 + +       P+  E      +Y    + +   +     ++R+  L   E  L  
Sbjct: 587  AASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLPILTEQVEYRRVGSLLDMELPLSR 646

Query: 188  LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
            L + + D G  VD  L    +Q +  E  + +          V +    ++L+  LF + 
Sbjct: 647  LLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAAAFEAIGREV-NLSSPKQLQDVLFNQL 705

Query: 248  GLHLEDLTET---TCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            GL     T+T   T  + L         P    +   R R+    V  +  L + + SDG
Sbjct: 706  GLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDRSKLLQV--VRNLGDRIASDG 763

Query: 303  RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            R+  T     A+ TGR S      QN+P  +                             
Sbjct: 764  RIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDDG-------------------------A 797

Query: 363  CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA      L+ AD + IE R++A ++G++  + AF++GEDL+ +  A  F VAP
Sbjct: 798  RIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVFGVAP 857

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              VT  QR   K     L Y               L ++         +    +    ++
Sbjct: 858  EAVTATQRTHVKATSYGLAYG-----LSAFGLAGQLRISQGEAKHLMETYFSRFGAVRDY 912

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
               +          +   G          R+    +      + +   +           
Sbjct: 913  LEHIVSEARRVGYTETMWGR---------RRYLPGLRATNRVVAENARRAA--------- 954

Query: 542  KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                                      L     G+    +     ++       G  +  +
Sbjct: 955  --------------------------LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRIL 988

Query: 602  VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660
            +Q                            +V E    +      +    MTS       
Sbjct: 989  LQ-------------IHDE-----------LVFEVAPGEVDALRRVVTEAMTSVVE--LR 1022

Query: 661  LPLKAEGYESKRYR 674
            +PL+        +R
Sbjct: 1023 VPLEVSVGVGANWR 1036


>gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium]
          Length = 283

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 110/383 (28%), Gaps = 113/383 (29%)

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
              GR+  +     A  TGR S      QN+P  +    E                    
Sbjct: 2   RKTGRVHTSYNQAVA-VTGRLSSNNPNLQNIPVRTERGRE-------------------- 40

Query: 359 IISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +R   +   E   L+ AD + IE R++A ++G+    +AF+ G+D++  T A+ +
Sbjct: 41  -----IRKAFVPRDENHLLISADYSQIELRIVAAISGDPNMCEAFKQGKDIHTATAAKVY 95

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
           N+  A VTK+ R   K +                    G                     
Sbjct: 96  NIEEADVTKEMRYKAKSVN--------------FGIIYG--------------------- 120

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                    +     A       +  + +   ++++   + +         +   +NG  
Sbjct: 121 ---------QGAFGLAENLKITRSEAKEIIDNYKKQFPNIQQYM---DAQMKFAQQNGYV 168

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                      GR    +D+ +      T      R        
Sbjct: 169 ETLW-----------------------GRKRWLKDINSGNF---TVRGYAERNAINMP-- 200

Query: 598 TENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNAS-MLYHL 650
               +Q  + D++   M+   +          ++L VHDE+V +    +      ++   
Sbjct: 201 ----IQGTAADMIKLAMIKIHREFKDRGFKSKMILQVHDELVFDAWKDEVDIIKPIIIEC 256

Query: 651 MTSNPSWAKGLPLKAEGYESKRY 673
           M S       +P  AE      +
Sbjct: 257 MQSALPLPNDVPANAEIGVGVNW 279


>gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper]
 gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper]
          Length = 609

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 114/679 (16%), Positives = 200/679 (29%), Gaps = 168/679 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET         G+  Y +D  + L  FG +     +       V       AL
Sbjct: 36  RILGLDTETT--------GLNIYQDDFGIRLIQFG-NPWESWVLPVERGGVFVGAAATAL 86

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111
           +      V HN+ F+  V++    + +     +   T + +                L+ 
Sbjct: 87  Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +   +     EE K  +AR  K        D+           +  Y   D  +   +
Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202

Query: 172 FKRLEP--------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             ++ P        L   E +L  +   +   G+ +DV  +  L++ +  +         
Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSEDMLRKAEHYTAVAR 262

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279
                 V S    EKL   L   TG+ ++  T T  ++V    L +  +      +    
Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATNKRQVNAELLEALAEEGNALAKAAIE 319

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +        +   +E  +++ R+   +  L A RTGR S      QNLP         
Sbjct: 320 AKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGD------ 372

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   VR C +A  G+ +   D    E RVLA ++G+Q  L
Sbjct: 373 ----------------------WMVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTML 410

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AFE   DL+  T         A      R IGK+    + Y GGA      A       
Sbjct: 411 RAFEEESDLHQVT---------ADAAGVDRKIGKMANFLVCYGGGAGKLATNA------- 454

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       ++V + +   +  V  
Sbjct: 455 -------------------------------------GITFPEAKKVLEVFATTYPGVDT 477

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           L   + Q                                 +  P+GR L           
Sbjct: 478 LNKRMQQEAGSA--------------------------GFITTPTGRRLPVDPDR----- 506

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETP 637
                                ++Q+ SRD+    ++   +AG+  ++ L VHDE++   P
Sbjct: 507 --------------AYSALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLLSLP 552

Query: 638 D-TDEFNASMLYHLMTSNP 655
           +   E     +  +M    
Sbjct: 553 EADAEAAVKEVGQIMEQRI 571


>gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025]
 gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025]
          Length = 878

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/652 (14%), Positives = 176/652 (26%), Gaps = 139/652 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
               + D            +   + KEAL             ++     VL +   +D+ 
Sbjct: 337 IGLAWGDDQAIYATTDTSLLTHDLFKEALSKP--IKT-----YDFKRGKVLLSHLGIDLL 389

Query: 90  IHRWICTLVLARSN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 + +             S +  +   L L +     GK       +         
Sbjct: 390 TAS-FDSRLAKYLLSTVENNNISTIARLYTDLPLETDDDVYGKGAKRAIPEKNVLLSHLA 448

Query: 145 RNKP--NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
           +        E            + +              E  L  +   +   G  V   
Sbjct: 449 KKISVLLASEEPMRQKLSANDQLDLLF----------EMELPLANVLAKMEIAGISVRKE 498

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE---T 257
               + +  ++E   L QE+  L      +    ++L   LF + GL L     T+   +
Sbjct: 499 TLQDMERANEIELQALTQEIYDLAG-EAFNINSPKQLGVILFEKLGLPLSATKKTKTGYS 557

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL      +P   ++   R   ++     +  L ++++ DG++         ++TG
Sbjct: 558 TAVDVLERLAHRSPIVAKILEYRQ-IAKLQSTYIIGLQDSISFDGKIHTRYLQD-LTQTG 615

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKL 376
           R S      QN+P                                 +R   +   +   L
Sbjct: 616 RLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFVPEWKESVL 650

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435
           + +D + IE RVLA ++G++  + AF+ G D++ +T  R F +  P  VT + R   K +
Sbjct: 651 LSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 710

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y               L ++  A      +  E +   +N+   +     +    
Sbjct: 711 NFGVVYGIS-----DFGLANNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYV 765

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
           +       E      R  +  +        +    +   G A    K   + L    K  
Sbjct: 766 ETLFHRRRELPDINSR--NFNIRSF---AERTAINSPIQGSAADILKVAMIHLDQALKKG 820

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
           +    ML                                                    +
Sbjct: 821 DYQSRML----------------------------------------------------L 828

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE 666
                   IVL V        P+ +      L    M S       +PL A+
Sbjct: 829 QVHDE---IVLEV--------PNAELEAIQKLVKETMESAIE--LSVPLVAD 867


>gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
          Length = 1040

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 103/674 (15%), Positives = 193/674 (28%), Gaps = 142/674 (21%)

Query: 37   FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
            F +  V +      P    VL++     + T+V +N+   R  L   +  ++        
Sbjct: 469  FREEAVLVTPSTLRPESENVLRDFFAAENRTVVVYNAKALRHAL-RAYGWELS-GTVQDV 526

Query: 97   LVLARSNGLPSAL---KAVGEALK---LSSQKMEEGK------------------ELIAR 132
             +L       ++     AV E L    +  +  + GK                     A 
Sbjct: 527  NLLDYLADPDASRLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAV 586

Query: 133  FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-----FKRLEPLSSKEQELWY 187
                 + +       P+  E      +Y    + +   +     ++R+  L   E  L  
Sbjct: 587  TASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLPILTEQVKYRRVGSLLDMELPLSR 646

Query: 188  LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
            L + + D G  VD  L    +Q +  E  + +          V +    ++L+  LF + 
Sbjct: 647  LLERMEDTGIAVDEGLLQRFDQELSSEVKRTETAAFEAIGREV-NLSSPKQLQDVLFNQL 705

Query: 248  GLHLEDLTET---TCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            GL     T+T   T  + L         P    +   R R+    +  +  L + +  DG
Sbjct: 706  GLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDRSKLLQI--VRNLGDRIAPDG 763

Query: 303  RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            R+  T     A+ TGR S      QN+P  +                             
Sbjct: 764  RIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDDG-------------------------A 797

Query: 363  CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA      L+ AD + IE R++A ++G++  + AF++GEDL+ +  A  F VAP
Sbjct: 798  RIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVFGVAP 857

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              VT  QR   K     L Y               L ++         +    +    ++
Sbjct: 858  EAVTATQRTHVKATSYGLAYG-----LSAFGLAGQLRISQGEAKHLMETYFSRFGAVRDY 912

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
               +          +   G          R+    +      + +   +           
Sbjct: 913  LEHIVSEARRVGYTETMWGR---------RRYLPGLRATNRVVAENARRAA--------- 954

Query: 542  KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                                      L     G+    +     ++       G  +  +
Sbjct: 955  --------------------------LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRIL 988

Query: 602  VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660
            +Q                            +V E    +      +    MTS       
Sbjct: 989  LQ-------------IHDE-----------LVFEVAPGEVDALRRVVTEAMTSVVE--LR 1022

Query: 661  LPLKAEGYESKRYR 674
            +PL+        +R
Sbjct: 1023 VPLEVSVGVGANWR 1036


>gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 896

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 104/664 (15%), Positives = 182/664 (27%), Gaps = 130/664 (19%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             V    F  D   + L      P   + + EAL      +V H++   R  L +     
Sbjct: 342 GEVTRLVFATDKQALVLDPTELTPAQDRAVAEALA--STRLVVHDAKGVRHALASR-GWT 398

Query: 88  IPIHRWICTLVLARSNGL---PSAL-KAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
           +       T++ A           L   V   L +   +  +   L       E      
Sbjct: 399 L-GEVAFDTMLAAYLAHPDQRSHKLTDVVARILGIEVSEAADEGALFDMDESEEGPTGAE 457

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
            R      +   L        +  T E  K L  LS  E  L  L   +   G  VD  +
Sbjct: 458 MRAGRIAAQLIPL-----AERLRRTLEESKELGLLSDMEMPLARLLGDMEATGIGVDTGV 512

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
              L+  +  +  K  +         V +    ++L+  LF    L     T+T      
Sbjct: 513 LSDLSAELGADVEKARRGAWEAAGREV-NLSSPKQLQELLFDHFALPKTKKTKTGYTTNA 571

Query: 264 SSNKKL-----------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
            +   L                 +  +R R        +++L+  + +D R+  T     
Sbjct: 572 EALADLWAKTEASGGAGHRFLGYLLAHRDRIKLKQ--MVDSLIATVGADERIHTTFSQ-V 628

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
           A+ TGR +      QN+P  S                              +R       
Sbjct: 629 AAATGRLASSDPNLQNIPARSPDGMR-------------------------IRGAFTPGP 663

Query: 373 GK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           G   L+ AD + IE R++A ++G++  ++AF +GEDL+ T  +  F     QV+ ++R+ 
Sbjct: 664 GYASLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVEQVSGEERSR 723

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K     L Y               L +         +   E +    ++   +      
Sbjct: 724 IKATSYGLAYG-----LSSYGLAAQLGIAVPEAAALRDRYFERFGKVRDYLEGLVAQARA 778

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
               +   G    R     R  +    +      +A       G A              
Sbjct: 779 DGYTETMFGR--RRYLPDLRSSN---RQRREMAERAALNAPIQGSAADIV---------- 823

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                                     + +N  +          G  T  +VQ        
Sbjct: 824 ------------------------KIAMMNVAS-----ALANEGLATRLLVQ-------- 846

Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670
                           +HDE++ E    +   A  L    M      A  +PL       
Sbjct: 847 ----------------IHDELLLEIAPGEADVAEKLVRERMEGAV--ALSVPLDVAVGVG 888

Query: 671 KRYR 674
             ++
Sbjct: 889 ASWQ 892


>gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
 gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931]
          Length = 955

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 103/690 (14%), Positives = 200/690 (28%), Gaps = 143/690 (20%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYF 75
           TK  I    E+  +               +  +    +     E + +  +  +  +   
Sbjct: 371 TKTKIRAAEENPVLRGI-ILTSKESSLWINLTNISEDLASAFAEWVSDPQMRKIVMDLKN 429

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGL----PSAL-----KAVGE-ALKLSSQKMEE 125
           +R  L   +   +         + +   G        L     + + E  L +  Q   E
Sbjct: 430 QRK-LLREYGYKLD-GAIEDPSLSSYMCGYIAAANRRLFAERIEDLAEKYLWIPQQ---E 484

Query: 126 GKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
             EL+         E   + N     + +           +    +   +L+     E  
Sbjct: 485 FSELVFPEEAPSLFEMPGEENLRYFTQVS--RVIHELARILHFEMQEQGQLKIYEDIELP 542

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS----SSRCLEKLK 240
           L Y+   +   G  V  AL + LN       +  +++ + L  G V+    +   +++L+
Sbjct: 543 LLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVKQLQ 602

Query: 241 TWLFLETGLHLEDLTET-------TCQRVLSSNKKLTPQAIQV--FNNRMRASRSAVLKL 291
           T LF   GL      ++       +   +L+     +  A  +          +     +
Sbjct: 603 TVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQT-V 661

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L +A  +DGR+  T Q   A+ TGR S      QN+P  +                  
Sbjct: 662 EGLQKAAVADGRVHTTFQQN-AASTGRLSSTAPNLQNIPIRTDEGRR------------- 707

Query: 352 SDPDPLQIISDCVRSCVIASEG-------KKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                       +R   I +         + L+ AD + IE R++  +A ++  ++A+  
Sbjct: 708 ------------IRGAFIVAPKILDGVEYEGLLTADYSQIEMRIMVHLAADEKLIQAYAD 755

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           GEDL+    +  F VAP +VT   RA  K M   L Y        +      LN+++   
Sbjct: 756 GEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYG-----LSRFGLAKQLNISSDEA 810

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                +  + +     F R + +        +   G          R+    +       
Sbjct: 811 GELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGR---------RRSLPDLDSPNRTR 861

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
            +A E+                                          +           
Sbjct: 862 REAAERAA----------------------------------------LNAPIQGTAADI 881

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
            ++     +     EN         L   M          +L VHDEI+ E    +   A
Sbjct: 882 IKIAMINIHRRLQEEN---------LKTRM----------LLQVHDEIILEVAAGEREAA 922

Query: 645 SML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
             +    M+        +PL  +    K +
Sbjct: 923 QRILVEEMSEAIE--LKVPLDVQVGWGKSW 950


>gi|219520265|gb|AAI45379.1| Poln protein [Mus musculus]
          Length = 848

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/648 (14%), Positives = 183/648 (28%), Gaps = 167/648 (25%)

Query: 67  TIVAHNSY-FERTVLKACFNLD----IPIHRWICTLVLARSNGLPS---ALKAVGEALKL 118
            +V  N+  F RTVL+     D    +     +   V A          + + +    K 
Sbjct: 316 PVVCFNAKDFVRTVLQLYGEDDSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDL--VAKH 373

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             + +           K  +      RN  +      L   Y      +T ++  +L+  
Sbjct: 374 LEKSIT---------VKPSSTFREASRNTLSQNVCMNLKILY-----DLTMDLCSKLKAY 419

Query: 179 SSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
              +        L  +   + +    VD       + ++     +L+QE   +       
Sbjct: 420 GLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAG-EQFL 478

Query: 233 SRCLEKLKTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNRM 281
                +L+  LF +  LHL    +           +T + +L+S + L P    +   R 
Sbjct: 479 IMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQ 538

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                               G +  T    G + TGR S      Q + +      +   
Sbjct: 539 --------------------GSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPWN 577

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                  ++T  P          R+  ++SEG   + AD + IE R+LA ++G+   LK 
Sbjct: 578 FKGKEEETVTISP----------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKL 627

Query: 402 FET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F+    +D++ T  ++  ++   +VT   R   K +  ++ Y                  
Sbjct: 628 FQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYG----------------- 670

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A              + + QK+ ++ +
Sbjct: 671 ---------------------------AGKERLAACLGVTVLEATHFLERFLQKYKKIKD 703

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
               +                                   +    GR      +      
Sbjct: 704 FAQTVIGQCHSA--------------------------GYVTSILGRRRPLPRICAQDQ- 736

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEI 632
                 Q  R+          +VQ  + D+    M+  + A          +V  +HDE+
Sbjct: 737 --QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDEL 788

Query: 633 VCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674
           + E  DT     A+++  +M              +PLK      + + 
Sbjct: 789 LFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSWG 836


>gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock]
          Length = 595

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 113/675 (16%), Positives = 201/675 (29%), Gaps = 168/675 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET         G+  Y++     L  FG  D    +       V  + ++ A+  
Sbjct: 38  LAVDTETT--------GLDIYSDTFECRLVQFGTQD-EAWVVPVELGDVFIEDVRIAIG- 87

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAVG 113
               +V  N+ ++  VL  CF +++     R + T +LA+              +L+ + 
Sbjct: 88  ALRKVVLQNASYDLQVLDQCFGIEMEDLWPRVLDTQILAKLVDPRPFEAGGFGHSLEELI 147

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               +S ++ E  K+L+A+  +         +           + +Y   D   T  + K
Sbjct: 148 AEF-ISKEQAETVKKLMAKLAQEHKTT--KAKIWATIDLFHPEYLKYAGMDTIFTARVCK 204

Query: 174 RLEPLSS--------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            L PL           E E+  +   I+ +G+ +DV  A  L+     ++   +    + 
Sbjct: 205 ALTPLVPDVSRGLVAYEHEISEICSYIDRQGFLLDVEYAQELSDKWLADQQVWEAIAFTE 264

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
               V      E L   L  E G+ +   TET      + +L        +   +     
Sbjct: 265 YG--VEKVNSTEDLAEGL-EEMGVKITGRTETGKRQVDKTLLEKLVAEGNELATIAQEAK 321

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           +  +     +   ++  +++ R    +  L A RT R S    P Q LP           
Sbjct: 322 KLGKWRKTWVQKFLDTRDAEDRCHTFVNPLQA-RTSRMSITGIPAQTLP----------- 369

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 VR C +A EG  +   D    E RVLA ++ +      
Sbjct: 370 -----------------ASDSTVRRCFLAEEGDVMASIDYQTQELRVLAALSND------ 406

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
                                                          Q M        + 
Sbjct: 407 -----------------------------------------------QTMIEAFKTGADL 419

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                       +     NF           A +        +R   A+ + +  V+ L 
Sbjct: 420 HQMTADAAQVTRKVGKMANFLTVYGGGAKTLAEQAKVDFPTAKRTLDAFARTYPGVARLS 479

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
            +L                                   ++ P GR L    V ++RSY  
Sbjct: 480 KKLGTEA--------------------------GRKGYIVTPVGRRLP---VDSSRSY-- 508

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDT 639
                              +VQ+ SRD+    ++   KAGY   + L +HDEIV   P +
Sbjct: 509 --------------SALNYMVQSSSRDVTCRALIRLHKAGYTPYLRLPIHDEIVASLPAS 554

Query: 640 DEF-NASMLYHLMTS 653
           +    A+ +  LM  
Sbjct: 555 EAERAAAHIGQLMAE 569


>gi|332523957|ref|ZP_08400209.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
 gi|332315221|gb|EGJ28206.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova
           176]
          Length = 887

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/654 (13%), Positives = 181/654 (27%), Gaps = 131/654 (20%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFE---RTVLKACFNLDIP 89
           AF + +              P++L++ L    +   +     ++     VL     ++IP
Sbjct: 347 AFAWGNQEAIYVS-----QNPELLRQPLFTKVLEKPIF---TYDFKRAKVLLNHLGIEIP 398

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
                   +             +    +L +    E  E I              ++   
Sbjct: 399 EAA-FDARLANYLL-SNVDDNELATIARLHTSISLESDEAI---YGKGVKRAFPAKDLLF 453

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTL 207
              A ++        V +  ++    +     + EL    +   +   G  V+      +
Sbjct: 454 SHLARKVAVLAASKPVMLE-KLADNGQSDLYYKIELPLANVLAKMEIAGIKVNKQTLMEM 512

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE---TTCQRV 262
            +        L QE+  L      +    ++L + LF +    L +   T+   +T   V
Sbjct: 513 AEQNRNVIDALTQEIYDLAG-EEFNINSPKQLGSILFEKMQLPLTMTKKTKTGYSTAVDV 571

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L     + P   ++ + R   ++     L  L + +  DG++         ++TGR S  
Sbjct: 572 LERLAPIAPIVAKILDYRQ-ITKLQSTYLIGLQDYIMEDGKIHTRYVQD-LTQTGRLSST 629

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD-L 381
               QN+P                                 +R     S    ++++   
Sbjct: 630 DPNLQNIPIRMEQGR-------------------------LIRKAFTPSSDDSVLLSSDY 664

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALG 440
           + IE RVLA ++G++  + AF    D++  T  R F +     VT + R   K +   + 
Sbjct: 665 SQIELRVLAHISGDEHLIAAFNNNADIHTATAMRVFGIEKETDVTPNDRRNAKAVNFGIV 724

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y            +  L ++        ++  E +   + +   +     +    +    
Sbjct: 725 YGIS-----DFGLSNNLGISRKKARDYIDTYFERYPGIKAYMDSVVREAKDKGYVETLFK 779

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              E      R  +  V        +    +   G A    K   + L     D+     
Sbjct: 780 RRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALADRAFKAK 834

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
           ML                                                    +     
Sbjct: 835 ML----------------------------------------------------LQVHDE 842

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
              IVL V        P+ +      L   +M      A  +PL+A+    + +
Sbjct: 843 ---IVLEV--------PNQELVTVRQLVKEIMEDAVDLA--VPLRADENSGQSW 883


>gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
 gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239]
 gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16]
          Length = 1040

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 105/674 (15%), Positives = 194/674 (28%), Gaps = 142/674 (21%)

Query: 37   FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
            F +  V +      P    VL++     + T+V +N+   R  L   +  ++        
Sbjct: 469  FREEAVLVTPSTLRPESENVLRDFFAAENRTVVVYNAKALRHAL-RAYGWELS-GTVQDV 526

Query: 97   LVLARSNGLPSAL---KAVGEALK---LSSQKMEEGK------------------ELIAR 132
             +L       ++     AV E L    +  +  + GK                     A 
Sbjct: 527  NLLDYLADPDASRLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAV 586

Query: 133  FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-----FKRLEPLSSKEQELWY 187
                 + +       P+  E      +Y    + +   +     ++R+  L   E  L  
Sbjct: 587  TASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLPILTEQVKYRRVGSLLDMELPLSR 646

Query: 188  LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
            L + + D G  VD  L    +Q +  E  + +          V +    ++L+  LF + 
Sbjct: 647  LLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAAAFEAIGREV-NLSSPKQLQDVLFNQL 705

Query: 248  GLHLEDLTET---TCQRVLSSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            GL     T+T   T  + L         P    +   R R+    V  +  L + + SDG
Sbjct: 706  GLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDRSKLLQV--VRNLGDRIASDG 763

Query: 303  RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            R+  T     A+ TGR S      QN+P  +                             
Sbjct: 764  RIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDDG-------------------------A 797

Query: 363  CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   IA      L+ AD + IE R++A ++G++  + AF++GEDL+ +  A  F VAP
Sbjct: 798  RIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVFGVAP 857

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              VT  QR   K     L Y               L ++         +    +    ++
Sbjct: 858  EAVTATQRTHVKATSYGLAYG-----LSAFGLAGQLRISQGEAKHLMETYFSRFGAVRDY 912

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
               +          +   G          R+    +      + +   +           
Sbjct: 913  LEHIVSEARRVGYTETMWGR---------RRYLPGLRATNRVVAENARRAA--------- 954

Query: 542  KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                                      L     G+    +     ++       G  +  +
Sbjct: 955  --------------------------LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRIL 988

Query: 602  VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKG 660
            +Q                            +V E    +      +    MTS       
Sbjct: 989  LQ-------------IHDE-----------LVFEVAPGEVDALRRVVTEAMTSVVE--LR 1022

Query: 661  LPLKAEGYESKRYR 674
            +PL+        +R
Sbjct: 1023 VPLEVSVGVGANWR 1036


>gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
 gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292]
          Length = 887

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 93/663 (14%), Positives = 180/663 (27%), Gaps = 142/663 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 384 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 433

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 434 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 493

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 494 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 552

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 553 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 610

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 611 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 645

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 646 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 705

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L ++        ++  E +   +N+   +     +
Sbjct: 706 AKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD 760

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
               +       E      R  +  +        +    +   G A    K   + L   
Sbjct: 761 KGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDKA 815

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                    ML                                                 
Sbjct: 816 LVAGGYQTKML------------------------------------------------- 826

Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670
              +        IVL V        P ++      L    M         +PL A+  E 
Sbjct: 827 ---LQVHDE---IVLEV--------PKSELVEMKKLVKQTMEEAIQ--LSVPLIADENEG 870

Query: 671 KRY 673
             +
Sbjct: 871 ATW 873


>gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 880

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 88/661 (13%), Positives = 176/661 (26%), Gaps = 143/661 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
             F +              +   + K+  E          + ++     VL +   LD+ 
Sbjct: 339 IGFAWGHGEQIYASTDLSLLSTDLFKKVFEKPI-------ATYDFKRSKVLLSHLGLDL- 390

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           +       +                   +   ++     L                 K  
Sbjct: 391 VAPSYDARLANYLLS------------NVEDNELTTIARLFTDISLEADDSIYGKGVKRA 438

Query: 150 HREAWRLFGEYCKG-----DVTVTR--EIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
             E   L G   +      D       ++    +     E EL    +   +   G  V+
Sbjct: 439 VPEKELLLGHLARKVKVLLDSRAPMVEKLADHDQIALYHEIELPLANILAKMEIEGIKVN 498

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE-- 256
            A    + +        L QE+  +      +    ++L + LF +    L +   T+  
Sbjct: 499 RATLQDMAEQNKAIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTG 557

Query: 257 -TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++
Sbjct: 558 YSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQ 615

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGK 374
           TGR S      QN+P                                 +R     S E  
Sbjct: 616 TGRLSSVDPNLQNIPVRLEQGR-------------------------LIRKAFTPSQEDA 650

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGK 433
            L+ +D + IE R+LA ++G++  + AF  G D++ +T  R F +     VT + R   K
Sbjct: 651 VLLSSDYSQIELRLLAHISGDEHLIAAFNEGADIHTSTAMRVFGIEKAEDVTANDRRNAK 710

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
            +   + Y            +  L +         ++  E +   + +   +     +  
Sbjct: 711 AVNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKG 765

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
             +       E      R  +  V        +    +   G A    K   + L    +
Sbjct: 766 YVETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDNALQ 820

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                  ML                                                   
Sbjct: 821 AGGFKAKML--------------------------------------------------- 829

Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKR 672
            +        IVL V        P+T+      L    M      A  +PL+A+    + 
Sbjct: 830 -LQVHDE---IVLEV--------PNTELAAVKKLVKETMEVAVDLA--VPLRADENAGQS 875

Query: 673 Y 673
           +
Sbjct: 876 W 876


>gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon]
 gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon]
          Length = 609

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 113/680 (16%), Positives = 198/680 (29%), Gaps = 170/680 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET          +  Y  D  + L  FG +     +       V       AL
Sbjct: 36  RILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTAL 86

Query: 62  ENTDVTI-VAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALK 110
           +   V   V HN+ F+  V++    + +     +   T + +                L+
Sbjct: 87  Q--KVEKFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + +   +     EE K  +AR  K        D+           +  Y   D  +   
Sbjct: 145 ELTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSR 201

Query: 171 IFKRLEP--------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +  ++ P        L   E +L  +   +   G+ +DV  +  L+  +  +        
Sbjct: 202 LLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVA 261

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFN 278
                  V S    EKL   L   TG+ ++  T T  ++V    L +  +      +   
Sbjct: 262 R--YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAI 318

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +        +   +E  +++ R+   +  L A RTGR S      QNLP        
Sbjct: 319 EAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGD----- 372

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    VR C +A  G+ +   D    E RVLA ++G+Q  
Sbjct: 373 -----------------------WMVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTM 409

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AF+   DL+  T         A      R IGK+    + Y GGA      A      
Sbjct: 410 LRAFKEESDLHQVT---------ADAAGVDRKIGKMANFLVCYGGGAGKLATNA------ 454

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                                        ++V + +   +  V 
Sbjct: 455 --------------------------------------GITFPEAKKVLEVFATTYPGVD 476

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            L   + Q                                 +  P+GR L          
Sbjct: 477 TLNKRMQQEAGSA--------------------------GFITTPTGRRLPVDPDR---- 506

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCET 636
                                 ++Q+ SRD+    ++   +AG+  ++ L VHDE++   
Sbjct: 507 ---------------AYSALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLLSL 551

Query: 637 PD-TDEFNASMLYHLMTSNP 655
           P+   E     +  +M    
Sbjct: 552 PEADAEAAVKEVGQIMEQRI 571


>gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457]
 gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457]
          Length = 575

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 93/663 (14%), Positives = 180/663 (27%), Gaps = 142/663 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 32  LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 81

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 82  GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 131

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 132 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 191

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 192 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 250

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 251 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 308

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 309 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 343

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 344 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 403

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L ++        ++  E +   +N+   +     +
Sbjct: 404 AKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD 458

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
               +       E      R  +  +        +    +   G A    K   + L   
Sbjct: 459 KGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDKA 513

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                    ML                                                 
Sbjct: 514 LVAGGYQTKML------------------------------------------------- 524

Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670
              +        IVL V        P ++      L    M         +PL A+  E 
Sbjct: 525 ---LQVHDE---IVLEV--------PKSELVEMKKLVKQTMEEAIQ--LSVPLIADENEG 568

Query: 671 KRY 673
             +
Sbjct: 569 ATW 571


>gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
 gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14]
          Length = 889

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 93/663 (14%), Positives = 180/663 (27%), Gaps = 142/663 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 346 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 395

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 396 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 445

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 446 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIM 505

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 506 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 564

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 565 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 622

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 623 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 657

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 658 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRN 717

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L ++        ++  E +   +N+   +     +
Sbjct: 718 AKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD 772

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
               +       E      R  +  +        +    +   G A    K   + L   
Sbjct: 773 KGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDKA 827

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                    ML                                                 
Sbjct: 828 LVAGGYQTKML------------------------------------------------- 838

Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670
              +        IVL V        P ++      L    M         +PL A+  E 
Sbjct: 839 ---LQVHDE---IVLEV--------PKSELVEMKKLVKQTMEEAIQ--LSVPLIADENEG 882

Query: 671 KRY 673
             +
Sbjct: 883 ATW 885


>gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 924

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 85/660 (12%), Positives = 172/660 (26%), Gaps = 141/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87
             F +                       L       V     + ++     VL +   ++
Sbjct: 383 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 433

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           + +       +             +    ++ +         I+       +     R  
Sbjct: 434 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 483

Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201
           P+            K   D                  Q     L  +   +   G  V+ 
Sbjct: 484 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 543

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256
           A    + +   V    L QE+  +      +    ++L + LF +    L +   T+   
Sbjct: 544 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 602

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++T
Sbjct: 603 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 660

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P                                 +R     S E   
Sbjct: 661 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSQEDAV 695

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP-AQVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +     VT + R   K 
Sbjct: 696 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAEDVTANDRRNAKA 755

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y            +  L +         ++  E +   + +   +     +   
Sbjct: 756 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 810

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +       E      R  +  V        +    +   G A    K   + L    + 
Sbjct: 811 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDNALQA 865

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                 ML                                                    
Sbjct: 866 GGFKAKML---------------------------------------------------- 873

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +        IVL V        P+ +      L    M +    A  +PL+A+    + +
Sbjct: 874 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLRADENAGQSW 920


>gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131]
 gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131]
          Length = 880

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 84/658 (12%), Positives = 170/658 (25%), Gaps = 137/658 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87
             F +                       L       V     + ++     VL +   ++
Sbjct: 339 IGFAWGHGEQIYVSTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           + +       +             +    ++ +    E  + +  + KG           
Sbjct: 390 V-VAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTV--YGKGTKRAVPDKDVL 445

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDVAL 203
             H             D                  Q     L  +   +   G  V+ A 
Sbjct: 446 LEHLARKVKVLL----DSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE---TT 258
              + +   V    L QE+  +      +    ++L + LF +    L +   T+   +T
Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL     + P   ++ + R   ++     +  L + + +DG++         ++TGR
Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQTGR 618

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377
            S      QN+P                                 +R     S E   L+
Sbjct: 619 LSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAVLL 653

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVME 436
            +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K + 
Sbjct: 654 SSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVN 713

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y            +  L +         ++  E +   + +   +     +    +
Sbjct: 714 FGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVE 768

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  E      R  +  V        +    +   G A    K   + L    +   
Sbjct: 769 TLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQAGG 823

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                L                                                    + 
Sbjct: 824 FRAKCL----------------------------------------------------LQ 831

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  IVL V        P+ +      L    M +    A  +PL  +    + +
Sbjct: 832 VHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246]
          Length = 1454

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 106/697 (15%), Positives = 182/697 (26%), Gaps = 188/697 (26%)

Query: 6    IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            +D ET             +A D  V L +         L D    P     L   LE   
Sbjct: 917  LDLETTGL---------SHARD-RVRLLSLATPSGT-FLVDLFALPDPAAALAPLLEALT 965

Query: 66   -VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-----SALKAVG-EALKL 118
             V +V  N  F+   L     L     R   T++ ++           +LK +    L L
Sbjct: 966  AVEVVGQNLGFDLPFLMR---LGFVPGRVRDTMLASQVLHAGNRTTGHSLKDLAHRHLGL 1022

Query: 119  SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
               K                      +              Y   D  +   +++RL P 
Sbjct: 1023 ELDK--------------------GLQTADWSGPLTDAHLGYAARDAELPLALWERLAPE 1062

Query: 179  SSKEQELWYLDQTIN---------DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
             +        +  +            G   D      +    +    +  + L+ L    
Sbjct: 1063 LAAAHLTGTAEAEMAALPAVAWAARHGVGFDRPAWDAVAADTEACAARAREHLDELLPNA 1122

Query: 230  -----VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
                 V++   ++++                 +T      +   +   A  +      AS
Sbjct: 1123 GNLFGVTNWNSVDEVTAAFAAAGVALT-----STGDD---ALAAVAHPAAALLREHRAAS 1174

Query: 285  RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
            + +       +  +  DGR+    + +GA  +GR S      Q LPR             
Sbjct: 1175 KLSGTYGRGWLRHVADDGRVYAAWKQVGAGASGRMSCKDPNLQQLPRD------------ 1222

Query: 345  HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                                R C +   G+ LV AD + IE R+ A + G++  L A++ 
Sbjct: 1223 -----------------PRFRRCFVTPPGRVLVKADYSQIELRIAAKITGDKRMLDAYQK 1265

Query: 405  GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
            GEDL+ TT           VTK  R + K +   L Y  GAKA    A++          
Sbjct: 1266 GEDLHTTTARAVLGKT--DVTKADRQLSKSLNFGLLYGMGAKALAAYAASN--------- 1314

Query: 465  LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                      + A+ + +  +     ++
Sbjct: 1315 -----------------------------FGVALTEGEAADHRDAFFRTYPGLRAWHRKV 1345

Query: 525  HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
                 QT                                +GR             +   T
Sbjct: 1346 PDGIIQT-----------------------------RTLAGRRR---------VGVGAFT 1367

Query: 585  RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVLTVHDEIVCETPDT 639
             +               VQ    D L   +               VL VHDEIV E  + 
Sbjct: 1368 EK-----------LNTPVQGTGADGLKRALALLWARRNSCPDAFPVLLVHDEIVVECSEE 1416

Query: 640  -DEFNASMLYHLMTSNP-SWAKGLPLKAEGYESKRYR 674
              +   + +   M          +P++ E    + + 
Sbjct: 1417 RRDEAIAWVRDAMRDGMAPLIDPVPVEVEVSAGRTWG 1453


>gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5]
 gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5]
          Length = 856

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 89/631 (14%), Positives = 180/631 (28%), Gaps = 158/631 (25%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKME 124
            ++A+N   E   L   +N   P   +    +LA      L  +L A+G+ L      + 
Sbjct: 355 KLIAYNLK-EVCSLLRGYNFPFPTC-YEDIGILAWLENCYLEPSLHALGQYLGEQGYDLA 412

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
             ++  A F        +  R         + +  Y +    +++E++     L     E
Sbjct: 413 GLEDTEALF-----KASINARLI------LKAYKHYKE---VLSQELWGIAHKLEYPLLE 458

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L Y  Q     G+ +D+A    L Q        L+Q ++++    + +     +    L+
Sbjct: 459 LLYTMQG---HGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPL-NVNSSRQWAQVLY 514

Query: 245 LETGLHLE--DLTE---TTCQRVLSSNKKLTP-----------QAIQVFNNRMRASRSAV 288
              GL  +     +   +T +  L + +                  ++ N R    +   
Sbjct: 515 EHLGLESKGIKKGKIGLSTNEASLKALQATYAQSEVRGVCVGVLLTKLLNYR-EIFKLQS 573

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +   ++  ++ G++  T      + + R S      QN+P       ++ +       
Sbjct: 574 TYVEPFLKR-HTQGKIHTTFYQNK-TASSRLSSANPNLQNIPIRHDLGRKIARG------ 625

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                               IAS G  L+  D + IE R+LA  + +Q  LKAFE  ED+
Sbjct: 626 -------------------FIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDI 666

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           ++ T    F                                                   
Sbjct: 667 HLNTATALFG------------------------------------------------NQ 678

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             A      A NF         + A          +   + +  K   +     EL    
Sbjct: 679 AQAKRPIAKAINFGLIYGMGARKLAQTLQISQEEAKAYMERYFNKFPTIKNFLEELK--A 736

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
               E     +    R                            +               
Sbjct: 737 RILQEGQVTTLLGHVRRFSFKQAS------------------PKLH-------------- 764

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTVHDEIVCETPDTDEFN 643
               Y  +    + Q  + D++   M+        +A   +++ VHDE++ E  + +   
Sbjct: 765 --ADYLREGVNTLFQGSASDLVKLAMLAIYQKYESRADIKMLVQVHDELILEVSEIEARE 822

Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +  LM +   +   +PL+     +  +
Sbjct: 823 LQQEIKTLMENI--YPLRVPLECHASIASNW 851


>gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole]
          Length = 609

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 113/680 (16%), Positives = 198/680 (29%), Gaps = 170/680 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET          +  Y  D  + L  FG +     +       V       AL
Sbjct: 36  RILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTAL 86

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111
           +      V HN+ F+  V++    + +     +   T + +                L+ 
Sbjct: 87  Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +   +     EE K  +AR  K        D+           +  Y   D  +   +
Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202

Query: 172 FKRLEP--------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             ++ P        L   E +L  +   +   G+ +DV  +  L+  +  +         
Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR 262

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS-----SNKKLTPQAIQVFN 278
                 V S    EKL   L   TG+ ++  T TT +R ++     +  +      +   
Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRT-TTGKRQVNAELLEALAEEGNALAKAAI 318

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              +        +   +E  +++ R+   +  L A RTGR S      QNLP        
Sbjct: 319 EAKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGD----- 372

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                    VR C +A  G+ +   D    E RVLA ++G+Q  
Sbjct: 373 -----------------------WMVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTM 409

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           L+AFE   DL+  T         A      R IGK+    + Y GGA      A      
Sbjct: 410 LRAFEEESDLHQVT---------ADAAGVDRKIGKMANFLVCYGGGAGKLATNA------ 454

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                                                        ++V + +   +  V 
Sbjct: 455 --------------------------------------GITFPEAKKVLEVFATTYPGVD 476

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            L   + Q                                 +  P+GR L          
Sbjct: 477 TLNKRMQQEAGSA--------------------------GFITTPTGRRLPVDPDR---- 506

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCET 636
                                 ++Q+ SRD+    ++   +AG+  ++ L VHDE++   
Sbjct: 507 ---------------AYSALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLLSL 551

Query: 637 PD-TDEFNASMLYHLMTSNP 655
           P+   E     +  +M    
Sbjct: 552 PEADAEAAVKEVGQIMEQRI 571


>gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
 gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1]
          Length = 856

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 89/631 (14%), Positives = 180/631 (28%), Gaps = 158/631 (25%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKME 124
            ++A+N   E   L   +N   P   +    +LA      L  +L A+G+ L      + 
Sbjct: 355 KLIAYNLK-EVCSLLRGYNFPFPTC-YEDIGILAWLENCYLEPSLHALGQYLGEQGYDLA 412

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
             ++  A F        +  R         + +  Y +    +++E++     L     E
Sbjct: 413 GLEDTEALF-----KASINARLI------LKAYKHYKE---VLSQELWGIAHKLEYPLLE 458

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
           L Y  Q     G+ +D+A    L Q        L+Q ++++    + +     +    L+
Sbjct: 459 LLYTMQG---HGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPL-NVNSSRQWAQVLY 514

Query: 245 LETGLHLE--DLTE---TTCQRVLSSNKKLTP-----------QAIQVFNNRMRASRSAV 288
              GL  +     +   +T +  L + +                  ++ N R    +   
Sbjct: 515 EHLGLESKGIKKGKIGLSTNEASLKALQATYAQSEVRGVCVGVLLTKLLNYR-EIFKLQS 573

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +   ++  ++ G++  T      + + R S      QN+P       ++ +       
Sbjct: 574 TYVEPFLKR-HTQGKIHTTFYQNK-TASSRLSSANPNLQNIPIRHDLGRKIARG------ 625

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                               IAS G  L+  D + IE R+LA  + +Q  LKAFE  ED+
Sbjct: 626 -------------------FIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDI 666

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           ++ T    F                                                   
Sbjct: 667 HLNTATALFG------------------------------------------------NQ 678

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             A      A NF         + A          +   + +  K   +     EL    
Sbjct: 679 AQAKRPIAKAINFGLIYGMGARKLAQTLQISQEEAKAYMERYFNKFPTIKNFLEELK--A 736

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
               E     +    R                            +               
Sbjct: 737 RILQEGQVTTLLGHVRRFSFKQAS------------------PKLH-------------- 764

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT-----KAGYDIVLTVHDEIVCETPDTDEFN 643
               Y  +    + Q  + D++   M+        +A   +++ VHDE++ E  + +   
Sbjct: 765 --ADYLREGVNTLFQGSASDLVKLAMLAIYQKYESRADIKMLVQVHDELILEVSEIEARE 822

Query: 644 A-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
               +  LM +   +   +PL+     +  +
Sbjct: 823 LQQEIKTLMENI--YPLRVPLECHASIASNW 851


>gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
 gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM
           20098]
          Length = 982

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 84/615 (13%), Positives = 168/615 (27%), Gaps = 136/615 (22%)

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAV----GEALKLSSQKMEEGKELIARFCKGETH 139
             +D+P      T +             +       L +  ++  E              
Sbjct: 476 LGVDLP-KPLFDTKLAGYLVQPDFHADTLEQAAARFLDIHVEEKTEEATQGLLDLDDGAD 534

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS------KEQELWYLDQTIN 193
                              ++      + R +  +++           E  + ++   + 
Sbjct: 535 ADADGNQTS-------TLLQHAAIIAELARALAPQIDQREQFGLLQRMELPVSHVLYGME 587

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
            +G  VD+    ++      +  +  QE+     G   + +  ++L   LF + GL    
Sbjct: 588 SQGAKVDMQRLTSMRDTFAAD-ARQAQEIAWDYAGTTVNLQSPKQLGKVLFEDMGLKPTK 646

Query: 254 LTET----TCQRVLSSNKKLTPQAIQ-------VFNNRMRASRSAVLKLNTLVEAMNS-D 301
            T+T    T    L           +       +  +R       +  + TL++A N  D
Sbjct: 647 RTKTGGYTTNADALQKLYFTYADDERASGFLGALLRHRETNKLKQI--VATLIDATNPAD 704

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            R+  T +   A+ TGR S      QN+P  + +  E                       
Sbjct: 705 ERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAAGRE----------------------- 740

Query: 362 DCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             +RS  +  EG + L+  D + +E R++A ++G++  ++AF++G D +    +    V 
Sbjct: 741 --IRSAFVPGEGFESLMSCDYSQVELRIMAHLSGDESLIEAFKSGADFHKYVASLVHGVP 798

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             Q+T DQR+  K M   L Y               L +               +    +
Sbjct: 799 VDQITPDQRSHVKAMSYGLAYG-----LSSYGLAQQLKIRPSEAEALKAKYFATFGKVHD 853

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           F         +    +   G          R+    +                       
Sbjct: 854 FLESCVSEARKRGYTETMFGR---------RRYFPALKS--------------------- 883

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                          N          +L     G+    +     +  R     G  +  
Sbjct: 884 --------------TNRAARDAAERAALNAPIQGSAADIMKIAMIRARRALAEAGMKSRI 929

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAK 659
           I+Q                        +HDE+V E    +    S L    M +      
Sbjct: 930 ILQ------------------------IHDELVVEIAPGEREQVSALVRDAMENAVH--L 963

Query: 660 GLPLKAEGYESKRYR 674
            +PL         ++
Sbjct: 964 DVPLDVSTGVGADWQ 978


>gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
 gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69]
          Length = 870

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 93/663 (14%), Positives = 180/663 (27%), Gaps = 142/663 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 327 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 376

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 377 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 426

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 427 KAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIV 486

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 487 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 545

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 546 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 603

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 604 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 638

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 639 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 698

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L ++        ++  E +   +N+   +     +
Sbjct: 699 AKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD 753

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
               +       E      R  +  +        +    +   G A    K   + L   
Sbjct: 754 KGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDKA 808

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                    ML                                                 
Sbjct: 809 LVAGGYQTKML------------------------------------------------- 819

Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670
              +        IVL V        P ++      L    M         +PL A+  E 
Sbjct: 820 ---LQVHDE---IVLEV--------PKSELVEMKKLVKQTMEEAIQ--LSVPLIADENEG 863

Query: 671 KRY 673
             +
Sbjct: 864 ATW 866


>gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
 gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270]
          Length = 880

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 84/658 (12%), Positives = 173/658 (26%), Gaps = 137/658 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
             F +              +     K+  +          + ++     VL +   +++ 
Sbjct: 339 IGFAWGHGEQIYASTDLGLLATDSFKQVFQKPI-------ATYDFKRSKVLLSHLGIEL- 390

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           +       +             +    ++ +         I+       +     R  P+
Sbjct: 391 VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAVPD 441

Query: 150 HREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDVAL 203
                       K   D                  Q     L  +   +   G  V+ A 
Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE---TT 258
              + +   V    L QE+  +      +    ++L + LF +    L +   T+   +T
Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL     + P   ++ + R   ++     +  L + + +DG++         ++TGR
Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQTGR 618

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377
            S      QN+P                                 +R     S E   L+
Sbjct: 619 LSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAVLL 653

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVME 436
            +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K + 
Sbjct: 654 SSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVN 713

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y            +  L +         ++  E +   + +   +     +    +
Sbjct: 714 FGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVE 768

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  E      R  +  V        +    +   G A    K   + L    +   
Sbjct: 769 TLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQAGG 823

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
               ML                                                    + 
Sbjct: 824 FRAKML----------------------------------------------------LQ 831

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  IVL V        P+ +      L    M +    A  +PL  +    + +
Sbjct: 832 VHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
 gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68]
          Length = 870

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 93/663 (14%), Positives = 180/663 (27%), Gaps = 142/663 (21%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERT---VLKACF 84
           ++ FA+   D             + Q    K+ LE T + +      ++     VL   F
Sbjct: 327 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 376

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
            +D+         +                        +               +     
Sbjct: 377 GVDLQ-APAFDIRLAKYLL---------STVEDNEIATIASLYGQTYLVDDETFYGKGVK 426

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYC 198
           +  P   +            V     + ++L            EQ L ++   +   G  
Sbjct: 427 KAIPEREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIV 486

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE 256
           V       +    ++   KL QE+  L      +    ++L   LF + GL L     T+
Sbjct: 487 VKKETLLEMQAENELVIEKLTQEIYELAG-EEFNVNSPKQLGVLLFEKLGLPLEYTKKTK 545

Query: 257 ---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
              +T   VL     + P   ++ + R   ++     +  L + + +DG++         
Sbjct: 546 TGYSTAVDVLERLAPIAPIVKKILDYRQ-IAKIQSTYVIGLQDWILADGKIHTRYVQD-L 603

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-E 372
           ++TGR S      QN+P                                 +R   +   E
Sbjct: 604 TQTGRLSSVDPNLQNIPARLEQGR-------------------------LIRKAFVPEWE 638

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAI 431
              L+ +D + IE RVLA ++ ++  +KAF+ G D++ +T  R F +  P  VT + R  
Sbjct: 639 DSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRN 698

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K +   + Y            +  L ++        ++  E +   +N+   +     +
Sbjct: 699 AKAVNFGVVYGIS-----DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARD 753

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
               +       E      R  +  +        +    +   G A    K   + L   
Sbjct: 754 KGYVETLFKRRRELPDINSR--NFNIRGF---AERTAINSPIQGSAADILKIAMIQLDKA 808

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                    ML                                                 
Sbjct: 809 LVAGGYQTKML------------------------------------------------- 819

Query: 612 EGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYES 670
              +        IVL V        P ++      L    M         +PL A+  E 
Sbjct: 820 ---LQVHDE---IVLEV--------PKSELVEMKKLVKQTMEEAIQ--LSVPLIADENEG 863

Query: 671 KRY 673
             +
Sbjct: 864 ATW 866


>gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29]
 gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase
 gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29]
          Length = 607

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/678 (16%), Positives = 207/678 (30%), Gaps = 158/678 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLKEALE 62
           L +D ET         G+  Y+ D    L  FG       +       ++  + + EAL 
Sbjct: 38  LAVDTETT--------GLDIYSADFRCRLVQFGTQTES-WVLPIEDLEMLGREEVHEAL- 87

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAV 112
           +    IV  N+ ++  VL  CF + +     + + T +LA+              +L+ +
Sbjct: 88  DVLNKIVMQNASYDLQVLDRCFGIKMESLWPKILDTQILAKLVDPRPFGAGGFGHSLEEL 147

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                +S ++ E  K L+A+  K         +           +  Y   D   T  I 
Sbjct: 148 IAEF-ISKEQAENVKGLMAKLAKEHKTT--KAKIWSTIDLYHPEYLTYAGMDTVFTARIC 204

Query: 173 --------KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                       PL   E ++  +   I+ RG+ +DV  +  L      E+   +  L +
Sbjct: 205 SALAPLVPDVSRPLVPYEHKISEICSYIDRRGFLLDVEYSQQLADKWLGEQQVWEAVLLN 264

Query: 225 LTYGLVSSSRC-LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNR 280
                  ++   + +    L  +     +       +   +       +     ++    
Sbjct: 265 EYGIEKVNATEDVAEAFEELGHKFTAFTDSGKRKVDKGFYADMIAAGGEKAHLAEMVQEA 324

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +  +     + T ++  +S+ R    +  L A RT R S    P Q LP          
Sbjct: 325 KKLGKWRTSWVQTFLDTRDSEDRCHTFVNPLQA-RTSRMSITGIPAQTLP---------- 373

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  VR C +A  G  +   D    E RVLA ++G++  ++
Sbjct: 374 ------------------ASDWTVRRCFLADPGHVMASIDYQAQELRVLAALSGDRTMIQ 415

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF+ G DL++ T   +F     +   +                                 
Sbjct: 416 AFKDGADLHLMTARAAFGDHITKDDPE--------------------------------- 442

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                        ++    NF R         A +        ++V   + + +  V+  
Sbjct: 443 ------------RKYAKTVNFGRVYGGGANTVAEQTGISIETAKQVVDGFDKAYPGVTRY 490

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
             +L    ++                          N  ++ P GR L            
Sbjct: 491 SRKLANEAKR--------------------------NGYIINPMGRRLPVD--------- 515

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETP- 637
                   R  TY        +Q+ SRD+  + ++   +AG+   + L +HDEIV   P 
Sbjct: 516 --------RSRTY--SALNYQIQSTSRDVTCKALIRLHEAGFTPYLRLPIHDEIVASLPA 565

Query: 638 DTDEFNASMLYHLMTSNP 655
           +   + A  +  LM    
Sbjct: 566 EKANWGAREIARLMAEEM 583


>gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4]
 gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4]
          Length = 914

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 101/663 (15%), Positives = 186/663 (28%), Gaps = 132/663 (19%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNL 86
             V   A    D               +  L + L + +     H + +    L      
Sbjct: 362 GDVTAIAVAAADGEGAYIATASATPEDEKALGDWLADAEQPKALHEAKWAMHAL-RGRGW 420

Query: 87  DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142
            +       T + A           L  +    L+   +  E G+E ++           
Sbjct: 421 VL-GGLTSDTALAAYLVRPGQRTFNLDDLSLRYLRRELRVEETGQEQLSLL----DDADQ 475

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            D                    +    +  +    LS  E  L  +   I   G  VD  
Sbjct: 476 VDAEAAETEILSARAVLDLAAALDTELDNIESTALLSEMELPLLEVLAVIEASGIAVDGT 535

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---C 259
             H L      E ++  +    +    + +    ++L+  LF E  +     T+T     
Sbjct: 536 HLHDLQSRFAAEVSEAAEAAYGVIGKQI-NLGSPKQLQVVLFDELEMPKTKKTKTGYTTD 594

Query: 260 QRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
              L +  +    P    +  +R  A+R  V  ++ L++ +  DGR+  T     A+ TG
Sbjct: 595 AEALQNLFEKTSHPFLEHLLAHR-DATRLKVT-VDGLLKTVAEDGRIHTTFNQTVAA-TG 651

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KL 376
           R S      QN+P  + +                            +R   +  EG   L
Sbjct: 652 RLSSTEPNLQNIPVRTDAGR-------------------------QIRDGFVVGEGYDSL 686

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           + AD + IE R++A ++G+   ++AF TGEDL+    AR+F V   +VT + R   K M 
Sbjct: 687 LTADYSQIEMRIMAHVSGDAGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMS 746

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             L Y               L ++T     +  +    +    ++   + E   +     
Sbjct: 747 YGLAYG-----LSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHEVVEQARKDGYTS 801

Query: 497 LFIGTACERVKKAWRQKHSRV----SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
              G          R+    +     +      +A       G A    K   + +    
Sbjct: 802 TLYGR---------RRYLPDLTSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQRSL 852

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
           ++                                                       L  
Sbjct: 853 REAG-----------------------------------------------------LKS 859

Query: 613 GM-MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYES 670
            M +        +VL    E+V    D++      L    M+S       +PL       
Sbjct: 860 RMLLQVHDE---LVL----EVV----DSEREQVEQLVRDKMSSAIE--LSVPLDVSVGTG 906

Query: 671 KRY 673
           + +
Sbjct: 907 RSW 909


>gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 814

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 151/446 (33%), Gaps = 62/446 (13%)

Query: 95  CTLVLARSNGLPS---ALKAVGEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            T + A           L  +       +L ++  ++ +  +      +         + 
Sbjct: 402 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTILRA 461

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                     +     +  T  +          E  +  +   +   G  VD+ +   L 
Sbjct: 462 RAVIDLADALDAELARIDSTALLG-------EMELPVQRVLAKMESAGIAVDLPMLTELQ 514

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQRVLSS 265
                +     +    +    + +    ++L+  LF E G+     T+T   T    L S
Sbjct: 515 SQFGDQIRDAAEAAYGVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQS 573

Query: 266 NKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P    +  +R   +R  V  ++ L++A+ +DGR+  T     A+ TGR S   
Sbjct: 574 LFDKTGHPFLQHLLAHR-DVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTE 630

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK-KLVVADLA 382
              QN+P  + +                            +R   +  +G  +L+ AD +
Sbjct: 631 PNLQNIPIRTDAGRR-------------------------IRDAFVVGDGYAELMTADYS 665

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT + R   K M   L Y 
Sbjct: 666 QIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYG 725

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                      +  L ++T     + ++    +    ++ R + E   +       +G  
Sbjct: 726 -----LSAYGLSQQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGR- 779

Query: 503 CERVKKAWRQKHSRVSELWNELHQAF 528
                   R+    +     ++ +A 
Sbjct: 780 --------RRYLPELDSSNRQVREAA 797


>gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 880

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/660 (12%), Positives = 170/660 (25%), Gaps = 141/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87
             F +                       L       V     + ++     VL +   ++
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           + +       +             +    ++ +         I+       +     R  
Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439

Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201
           P+            K   D                  Q     L  +   +   G  V+ 
Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256
           A    + +        L QE+  +      +    ++L + LF +    L +   T+   
Sbjct: 500 ATLQDMAEQNKAIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++T
Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILTDGKIHTRYVQD-LTQT 616

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P                                 +R     S E   
Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K 
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y            +  L +         ++  E +   + +   +     +   
Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 766

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +       E      R  +  V        +    +   G A    K   + L    + 
Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                 ML                                                    
Sbjct: 822 GGFRAKML---------------------------------------------------- 829

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +        IVL V        P+ +      L    M +    A  +PL  +    + +
Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12]
 gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12]
          Length = 422

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 157/408 (38%), Positives = 200/408 (49%), Gaps = 55/408 (13%)

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEG 373
           TGRW+G +F P NLPRP+ S   +   I  +          D + + S  +RSC+IA   
Sbjct: 21  TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTH 80

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAF------------------------------- 402
           KKLVVADL+ IE RVLAW+AGE  KL AF                               
Sbjct: 81  KKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITL 140

Query: 403 ---------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                      G+D+Y   YA SF +AP  VTK+QR IGKV ELALGY GG  AF   A+
Sbjct: 141 QRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAA 200

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++L   A        P   ++A    +W + N             AC+  K+AWR  
Sbjct: 201 MYHIDLEAMAEQAAL--PPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNA 258

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-- 571
           H  ++  W  L  A    I + +            + ++  +  L L LPSGR L Y   
Sbjct: 259 HPAIAAFWQALQFAATDAIGHPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYAAP 313

Query: 572 --DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
             D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLT
Sbjct: 314 RVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLT 373

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VHDE++ E  D   FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 374 VHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421


>gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
 gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782]
          Length = 880

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 84/658 (12%), Positives = 173/658 (26%), Gaps = 137/658 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
             F +              +     K+  +          + ++     VL +   +++ 
Sbjct: 339 IGFAWGHGEQIYASTDLGLLATDSFKQVFQKPI-------ATYDFKRSKVLLSHLGIEL- 390

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           +       +             +    ++ +         I+       +     R  P+
Sbjct: 391 VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDIVYGKGAKRAVPD 441

Query: 150 HREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDVAL 203
                       K   D                  Q     L  +   +   G  V+ A 
Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE---TT 258
              + +   V    L QE+  +      +    ++L + LF +    L +   T+   +T
Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL     + P   ++ + R   ++     +  L + + +DG++         ++TGR
Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQTGR 618

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377
            S      QN+P                                 +R     S E   L+
Sbjct: 619 LSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAVLL 653

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVME 436
            +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K + 
Sbjct: 654 SSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVN 713

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y            +  L +         ++  E +   + +   +     +    +
Sbjct: 714 FGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVE 768

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  E      R  +  V        +    +   G A    K   + L    +   
Sbjct: 769 TLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQAGG 823

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
               ML                                                    + 
Sbjct: 824 FRAKML----------------------------------------------------LQ 831

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  IVL V        P+ +      L    M +    A  +PL  +    + +
Sbjct: 832 VHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS]
 gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS]
          Length = 880

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 83/658 (12%), Positives = 172/658 (26%), Gaps = 137/658 (20%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDIP 89
             F +              +     K+  +          + ++     VL +   +++ 
Sbjct: 339 IGFAWGHGEQIYASTDLGLLATDSFKQVFQKPI-------ATYDFKRSKVLLSHLGIEL- 390

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           +       +             +    ++ +         I+       +     R  P+
Sbjct: 391 VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAVPD 441

Query: 150 HREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDVAL 203
                       K   D                  Q     L  +   +   G  V+ A 
Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE---TT 258
              + +   V    L QE+  +      +    ++L + LF +    L +   T+   +T
Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL     + P   ++ + R   ++     +  L + + +DG++         ++TGR
Sbjct: 561 AVNVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQTGR 618

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLV 377
            S      QN+P                                 +R     S E   L+
Sbjct: 619 LSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAVLL 653

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVME 436
            +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K + 
Sbjct: 654 SSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDRAADVTANDRRNAKAVN 713

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y            +  L +         ++  E +   + +   +     +    +
Sbjct: 714 FGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVE 768

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  E      R  +  V        +    +   G A    K   + L    +   
Sbjct: 769 TLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQAGG 823

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                                           R                        ++ 
Sbjct: 824 F-------------------------------RAKM---------------------LLQ 831

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
                  IVL V        P+ +      L    M +    A  +PL  +      +
Sbjct: 832 VHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGHSW 876


>gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon]
 gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 422

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 155/408 (37%), Positives = 196/408 (48%), Gaps = 55/408 (13%)

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEG 373
           TGRW+G +F P NLPRP+ S   +   I  +          D + + S  +RSC+IA   
Sbjct: 21  TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTH 80

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL------------------------- 408
           KKLVVADL+ IE RVLAW+AGE  KL AF   +                           
Sbjct: 81  KKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITL 140

Query: 409 ---------------YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                          Y   YA SF +AP  VTK QR IGKV ELALGY GG  AF   A+
Sbjct: 141 QRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAA 200

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              ++L   A        P   ++A    +W + N             AC+  K+AWR  
Sbjct: 201 MYHIDLEAMAEQAAL--PPLLLQEAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNA 258

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-- 571
           H  ++  W  L  A    I + +            + M+  +  L + LPSGR L Y   
Sbjct: 259 HPAIAAFWKALQFAATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAP 313

Query: 572 --DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
             D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLT
Sbjct: 314 RVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLT 373

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VHDE++ E  D   FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 374 VHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421


>gi|62327214|ref|YP_223952.1| DNA polymerase [Phage phiJL001]
 gi|50059532|gb|AAT69504.1| DNA polymerase [Phage phiJL001]
          Length = 631

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 99/705 (14%), Positives = 188/705 (26%), Gaps = 135/705 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-------VMP 54
             +  D ET     L   G         +  + F  D  P       H+         + 
Sbjct: 27  RRVAFDLETY-DPHLKDTGPSVRTG-GHIAGYGFAIDGGPKHYLPVRHENGDNLDAAQVL 84

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARSNGLP---SALK 110
           + +K+  +  D  +V  N  ++         +D+P +  +   L+            +L 
Sbjct: 85  RYIKDQFKTFDGELVGANLGYDLD-WAWAEGIDMPLVKAYRDVLIAEPCINENKFFYSLD 143

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           +V     L  QK    K L+    +        +     H    R  G Y + D  +   
Sbjct: 144 SVAGD-WLGEQK---SKTLMIEAARAYGMRKDSELGSYIHLLPARYVGVYGEDDCALPLR 199

Query: 171 IFKRLEPLSSKE---------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           I +  E    ++          ++  +   +  RG  VD      +      ER      
Sbjct: 200 ILELQEKEIEQQGIQAVWDLESKVLPVLVRMRQRGVKVDEDRLMEVEIRATKERRDASDL 259

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV--FNN 279
           +  +T   V     ++K      L    H  +  +   +  ++ ++        +     
Sbjct: 260 ITRVTGVAVGPEDAMKKGILVDALRAAGHQLNADDAVDKHFIARHEGHCEVTAALGRLRK 319

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA----------SRTGRWSGCVFPPQNL 329
                + A   ++ +   M  +GR+  +   + A          +R GR S      Q  
Sbjct: 320 WDTLRKLA---IDPVKNHM-VNGRIHCSFNQMAADKDNGKGTKGARYGRLSCEHVNMQQQ 375

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P                             I+   R      +G      D +  E R+L
Sbjct: 376 PSRDED------------------------IAPIWRRIYRPDDGGLWAALDYSQQEPRML 411

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
              A       A E     Y        +   A +    R   K++ L L Y  G +   
Sbjct: 412 VHFAEICGMPGASEA-AQKYRDDPDTDNHQMMADMAGISRKEAKIIFLGLCYGMGQEKLC 470

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                    +                           +  P    + +  G    R+ + 
Sbjct: 471 HDLQLPTKIIE-------------------------LKKGPRKGQKMVVAGDEGARLFET 505

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           +  K   V ++ N       +                             +    GR   
Sbjct: 506 FHAKVPFVKQMENLCKDRATE--------------------------RGFITTLLGRRCR 539

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVH 629
           ++   +  +Y  T             K    ++Q  S D     M+ A +AGY++ L VH
Sbjct: 540 FKMGDDGLNYWGTH------------KALNRLIQGSSADQTKAAMVAADEAGYELQLQVH 587

Query: 630 DEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           DEI           A  +  +M +       +P K +      + 
Sbjct: 588 DEIDLTV--ESREQAEKIAEIMRTCVE--INVPSKVDVEVGVSWG 628


>gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
 gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180]
          Length = 880

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/660 (12%), Positives = 171/660 (25%), Gaps = 141/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87
             F +                       L       V     + ++     VL +   ++
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           + +       +             +    ++ +         I+       +     R  
Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439

Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201
           P+            K   D                  Q     L  +   +   G  V+ 
Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256
           A    + +   V    L QE+  +      +    ++L + LF +    L +   T+   
Sbjct: 500 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++T
Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P                                 +R     S E   
Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K 
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y            +  L +         ++  E +   + +   +     +   
Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 766

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +       E      R  +  V        +    +   G A    K   + L    + 
Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                 ML                                                    
Sbjct: 822 GGFRAKML---------------------------------------------------- 829

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +        IVL V        P+ +      L    M +    A  +PL  +    + +
Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1]
 gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315]
 gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus
           pyogenes SSI-1]
          Length = 880

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 85/660 (12%), Positives = 171/660 (25%), Gaps = 141/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87
             F +                       L       V     + ++     VL +   ++
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           + +       +             +    ++ +         I+       +     R  
Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439

Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201
           P+            K   D                  Q     L  +   +   G  V+ 
Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256
           A    + +   V    L QE+  +      +    ++L + LF +    L +   T+   
Sbjct: 500 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++T
Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P                                 +R     S E   
Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K 
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y            +  L +         ++  E +   + +   +     +   
Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 766

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +       E      R  +  V        +    +   G A    K   + L    + 
Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                 ML                                                    
Sbjct: 822 GGFRAKML---------------------------------------------------- 829

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +        IVL V        P+ +      L    M +    A  +PL  +    + +
Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|293571802|ref|ZP_06682818.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608056|gb|EFF37362.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 280

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 58/386 (15%), Positives = 108/386 (27%), Gaps = 116/386 (30%)

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            + SDG++         ++TGR S      QN+P       +                  
Sbjct: 1   MIQSDGKVHTRYVQ-TLTQTGRLSSVDPNLQNIPIRLDEGRK------------------ 41

Query: 357 LQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                  +R   +  E    +  +D + IE RVLA ++ ++    AF  G+D++ +T  R
Sbjct: 42  -------IRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMR 94

Query: 416 SFNVAP-AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
            F +     VT + R   K +                    G++    +           
Sbjct: 95  VFGIEKAEDVTPNMRRQAKAVN--------------FGIVYGISDYGLSQ---------- 130

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                      A ++    + +K+  V E    + +  +     
Sbjct: 131 --------------------NLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKD---- 166

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                    +     R     D+ +             R     
Sbjct: 167 ----------------------QGYVETLYHRRRYLPDINSRN---YNIRSFAERTAINT 201

Query: 595 GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                  +Q  + DIL   M+   K          ++L VHDE+V E P+ +  +   L 
Sbjct: 202 P------IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLV 255

Query: 649 -HLMTSNPSWAKGLPLKAEGYESKRY 673
             +M    S    +PL  +    K +
Sbjct: 256 KEVMEQAVS--LHVPLITDSSWGKTW 279


>gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
 gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo]
          Length = 880

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 85/660 (12%), Positives = 171/660 (25%), Gaps = 141/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87
             F +                       L       V     + ++     VL +   ++
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           + +       +             +    ++ +         I+       +     R  
Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439

Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201
           P+            K   D                  Q     L  +   +   G  V+ 
Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256
           A    + +   V    L QE+  +      +    ++L + LF +    L +   T+   
Sbjct: 500 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++T
Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P                                 +R     S E   
Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K 
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y            +  L +         ++  E +   + +   +     +   
Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 766

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +       E      R  +  V        +    +   G A    K   + L    + 
Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                 ML                                                    
Sbjct: 822 GGFRAKML---------------------------------------------------- 829

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +        IVL V        P+ +      L    M +    A  +PL  +    + +
Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
 gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750]
          Length = 880

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 84/660 (12%), Positives = 170/660 (25%), Gaps = 141/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87
             F +                       L       V     + ++     VL +   ++
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           + +       +             +    ++ +         I+       +     R  
Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439

Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201
           P+            K   D                  Q     L  +   +   G  V+ 
Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256
                + +   V    L QE+  +      +    ++L + LF +    L +   T+   
Sbjct: 500 TTLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++T
Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P                                 +R     S E   
Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K 
Sbjct: 652 LLSSDYSQIELRVLAHISGDKHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y            +  L +         ++  E +   + +   +     +   
Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 766

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +       E      R  +  V        +    +   G A    K   + L    + 
Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                 ML                                                    
Sbjct: 822 GGFRAKML---------------------------------------------------- 829

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +        IVL V        P+ +      L    M +    A  +PL  +    + +
Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5]
 gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase
 gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5]
          Length = 595

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 114/677 (16%), Positives = 202/677 (29%), Gaps = 172/677 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET         G+  Y++     L  FG  D    +       V  + ++ A+  
Sbjct: 38  LAVDTETT--------GLDIYSDTFECRLVQFGTQD-EAWVVPVELGDVFIEDVRIAI-- 86

Query: 64  TDVTI--VAHNSYFERTVLKACFNLDIPI--HRWICTLVLARSNGL--------PSALKA 111
                  V  N+ F+  VL  CF +++     R + T +LA+              +L+ 
Sbjct: 87  -GALKRMVLQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVDPRPFEAGGFGHSLEE 145

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +     +S  + E  K+L+A+            +           +  Y   D   T  +
Sbjct: 146 LIAKF-ISEDQAENVKKLMAKLAAEHKTT--KAKIWSTIDLFHPEYLLYAGMDTIFTARV 202

Query: 172 FKRLEPLSS--------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            K L PL           E ++  +   I+ +G+ +DV  + +L +    ++   +    
Sbjct: 203 CKSLTPLVPDVSRSLVPYEHKISEICSYIDRQGFLLDVEYSRSLAEKWLADQEVWEAIAF 262

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
           +     V      E L   L  E G+ +   TET        +L    +   +   +   
Sbjct: 263 TEYG--VEKVNSTEDLAEGL-EEMGVKITGRTETGKRQVNAALLDKLVEDGNELAAIAQE 319

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +  +     +   ++  +S+ R    +  L A RT R S    P Q LP         
Sbjct: 320 AKKLGKWRKTWVQKFIDTRDSEDRCHTFINPLQA-RTSRMSITGIPAQTLPS-------- 370

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   VR C IA  G  +   D    E RVLA ++G+    
Sbjct: 371 --------------------SDWIVRRCFIAEPGDVMASVDYQAQELRVLAALSGD---- 406

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                                                            + M        
Sbjct: 407 -------------------------------------------------RNMIEAFENGA 417

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +           P +     NF +         A          +RV +A+   +  V  
Sbjct: 418 DLHQMTADAAQVPRKVGKTANFQKVYGGGAKALAEAVGISIPVAKRVHEAFSATYPGVER 477

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           L  +L     +   NG                        ++   GR L    V ++R+Y
Sbjct: 478 LSKKL---AMEAGRNGY-----------------------IVNAMGRRLP---VDSSRTY 508

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETP 637
                                ++Q+ SRD+    ++   +AGY   + L +HDEIV   P
Sbjct: 509 ----------------SALNYMIQSSSRDVTCRALIRLHEAGYTPYLRLPIHDEIVASLP 552

Query: 638 DTDEF-NASMLYHLMTS 653
            ++    A+ + HLM  
Sbjct: 553 ASEAERAAAHIGHLMQE 569


>gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
 gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121]
          Length = 887

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 101/664 (15%), Positives = 183/664 (27%), Gaps = 134/664 (20%)

Query: 28  VCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
             V   A    D            P     L + L +       H + +    L      
Sbjct: 335 GDVTALAIAASDGECAYIAASTATPEDEAALGDWLADASQPKALHEAKWAIHAL-RGRGW 393

Query: 87  DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142
            +       T + A           L  +    LK   +    G+E ++     E     
Sbjct: 394 TL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTE----- 447

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLSSKEQELWYL--DQTINDRGYC 198
                        +       D+      E+          + EL        I   G  
Sbjct: 448 ---QLDAEAAETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATGIA 504

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
           VD A  H L      +          +    + +    ++L+  LF E  +     T+T 
Sbjct: 505 VDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTKTG 563

Query: 259 ---CQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
                  L         P    +  +R  A+R  V  ++ L++A+  DGR+  T     A
Sbjct: 564 YTTDAEALQGLFDKTGHPFLEHLLAHR-DATRMKVT-VDGLLKAVAEDGRIHTTFNQTVA 621

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR S      QN+P  + +  E                         +R   +  +G
Sbjct: 622 A-TGRLSSTDPNLQNIPVRNDAGRE-------------------------IRDGFVVGQG 655

Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+ AD + IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT + R   
Sbjct: 656 FDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRV 715

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K M   L Y             + L ++T     + ++    +    ++   + E   + 
Sbjct: 716 KAMSYGLAYG-----LSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKD 770

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                                                            +RR +P +   
Sbjct: 771 GYTSTLY-----------------------------------------GRRRYLPDLNSD 789

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD-ILA 611
             +          R  V      N     T    +        K           D  L 
Sbjct: 790 NRQ----------RREVAERAALNAPIQGTAADIIKVAMINVQKAL--------ADAGLK 831

Query: 612 EGM-MNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYE 669
             M +        +VL        E   ++     +++   M +       +PL      
Sbjct: 832 SRMLLQVHDE---LVL--------EVVASELEEVTALVKDKMATAIE--LSVPLDVSVGT 878

Query: 670 SKRY 673
            + +
Sbjct: 879 GRSW 882


>gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232]
 gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232]
          Length = 880

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 85/660 (12%), Positives = 171/660 (25%), Gaps = 141/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87
             F +                       L       V     + ++     VL +   ++
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           + +       +             +    ++ +         I+       +     R  
Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439

Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201
           P+            K   D                  Q     L  +   +   G  V+ 
Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256
           A    + +   V    L QE+  +      +    ++L + LF +    L +   T+   
Sbjct: 500 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++T
Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P                                 +R     S E   
Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K 
Sbjct: 652 LLGSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y            +  L +         ++  E +   + +   +     +   
Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGY 766

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +       E      R  +  V        +    +   G A    K   + L    + 
Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                 ML                                                    
Sbjct: 822 GGFRAKML---------------------------------------------------- 829

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +        IVL V        P+ +      L    M +    A  +PL  +    + +
Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
 gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394]
          Length = 880

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 85/660 (12%), Positives = 170/660 (25%), Gaps = 141/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87
             F +                       L       V     + ++     VL +   ++
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           + +       +             +    ++ +         I+       +     R  
Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439

Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201
           P+            K   D                  Q     L  +   +   G  V+ 
Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256
           A    + +   V    L QE+  +      +    ++L + LF +    L +   T+   
Sbjct: 500 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL     + P   ++   R   ++     +  L + + +DG++         ++T
Sbjct: 559 STAVDVLERLAPIAPIVAKILAYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P                                 +R     S E   
Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K 
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y            +  L +         ++  E +   + +   +     +   
Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQAKTYIDTYFERYPRIKAYMENVVREAKDKGY 766

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +       E      R  +  V        +    +   G A    K   + L    + 
Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                 ML                                                    
Sbjct: 822 GGFRAKML---------------------------------------------------- 829

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +        IVL V        P+ +      L    M +    A  +PL  +    + +
Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
 gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005]
 gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429]
          Length = 880

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 84/660 (12%), Positives = 171/660 (25%), Gaps = 141/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87
             F +                       L       V     + ++     VL +   ++
Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           + +       +             +    ++ +         I+       +     R  
Sbjct: 390 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 439

Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201
           P+            K   D                  Q     L  +   +   G  V+ 
Sbjct: 440 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 499

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256
           A    + +   V    L QE+  +      +    ++L + LF +    L +   T+   
Sbjct: 500 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 558

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++T
Sbjct: 559 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 616

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P                                 +R     S E   
Sbjct: 617 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 651

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K 
Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 711

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y            +  L +         ++  E +   + +   +     +   
Sbjct: 712 VNFGIVYGIS-----DFGLSNNLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGY 766

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +       E      R  +  V        +    +   G A    K   + L    + 
Sbjct: 767 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 821

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                                             R                        +
Sbjct: 822 GGF-------------------------------RAKM---------------------L 829

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +        IVL V        P+ +      L    M +    A  +PL  +    + +
Sbjct: 830 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876


>gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/506 (14%), Positives = 131/506 (25%), Gaps = 127/506 (25%)

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKL-----------KTWLFLETGLHLEDLTET----T 258
            +  + +E+E L          + ++              L    G+     T +     
Sbjct: 430 RKKSVRKEVEDLPEVKGFQIDNINQIVKENQRTPLKYTEMLIKGLGIEPLSYTPSGMPQA 489

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASR------------------------SAVLKLNTL 294
               L        +          A +                             +  L
Sbjct: 490 DYNALKQLAGDVEKQQYGLIYHHFAGKGEPQKGIDACVAINDLLELKSIEVLLHTFIIPL 549

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           +E  +  GR+  ++     + TGR S       N P                        
Sbjct: 550 IELTDPSGRIHTSININ--TETGRLSSRNPNLLNQP------------------------ 583

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
             L+     +R   IA +G KL+VAD   +E RVLA M   +  + AF  G D +  T  
Sbjct: 584 -ALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVLAHMTKCKAMIDAFLKGGDFHSRTVI 642

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F     ++ K         EL + +                       +    +A   
Sbjct: 643 TMFPHIQEEIDK--------GELLIEWDKSKGK------------APAPLVKDKYAAERR 682

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                NF     +     A +        ++   AW  +   V +    +    +     
Sbjct: 683 KAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQRKEVEQWQYNVRMIAKN---- 738

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                         GR          ++   +      R     
Sbjct: 739 ----------------------QFFTQTLLGRYRYLEKYFQQQT--RSYINHGLRAAINT 774

Query: 595 GKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT-DEFNASML 647
                  +Q  + DI+   M+   K       GY ++L VHDE++ E P+   +    ++
Sbjct: 775 P------IQGGAADIVIAAMVKIYKNQSLKDLGYKLLLQVHDELILEGPEENAQEALKIV 828

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673
             LM +       LPL+ +      +
Sbjct: 829 KELMENPFEIQLELPLEVDAKIGNNW 854


>gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
 gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096]
          Length = 806

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/660 (12%), Positives = 171/660 (25%), Gaps = 141/660 (21%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH--NSYFERT---VLKACFNLD 87
             F +                       L       V     + ++     VL +   ++
Sbjct: 265 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 315

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           + +       +             +    ++ +         I+       +     R  
Sbjct: 316 L-VAPSYDARLANYLL-STVEDNELSTIARIFTD--------ISLEEDDTVYGKGAKRAV 365

Query: 148 PNHREAWRLFGEYCK--GDVTVTREIFKRLEPLSSKEQ----ELWYLDQTINDRGYCVDV 201
           P+            K   D                  Q     L  +   +   G  V+ 
Sbjct: 366 PDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNR 425

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--TGLHLEDLTE--- 256
           A    + +   V    L QE+  +      +    ++L + LF +    L +   T+   
Sbjct: 426 ATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKMQLPLEMTKKTKTGY 484

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T   VL     + P   ++ + R   ++     +  L + + +DG++         ++T
Sbjct: 485 STAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADGKIHTRYVQD-LTQT 542

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
           GR S      QN+P                                 +R     S E   
Sbjct: 543 GRLSSVDPNLQNIPIRLEQGR-------------------------LIRKAFTPSHEDAV 577

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKV 434
           L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  A  VT + R   K 
Sbjct: 578 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKA 637

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           +   + Y            +  L +         ++  E +   + +   +     +   
Sbjct: 638 VNFGIVYGIS-----DFGLSNNLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGY 692

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +       E      R  +  V        +    +   G A    K   + L    + 
Sbjct: 693 VETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADILKIAMINLDKALQA 747

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                 ML                                                    
Sbjct: 748 GGFRAKML---------------------------------------------------- 755

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRY 673
           +        IVL V        P+ +      L    M +    A  +PL  +    + +
Sbjct: 756 LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 802


>gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia]
          Length = 858

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/660 (12%), Positives = 177/660 (26%), Gaps = 141/660 (21%)

Query: 57  LKEALENTDVTIVAHNSY---FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
           LK+ L   + T + +N      +    +  F ++          + ++      +L  + 
Sbjct: 293 LKDLL---NKTKIFYNLKPTDSDYQTKQNEFGIN----SLGD--IYSKYWN---SLGEIL 340

Query: 114 EALK-----LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             L+     +    ++  K       K      +         +      ++        
Sbjct: 341 TELEREGMQVDMDHVKNIKVKAEEDMKQYEQNFIKWVQTTQEGD----VSQFNCSSTQQL 396

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           +++F         ++    + +   +  Y  D     ++ + V+        +++++   
Sbjct: 397 QQLFFAPCKKQQVKKTPQTMKEEEEEDEYLSDGRK-KSVRKEVEDLPEVKGFQIDNIHQI 455

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           +  + R   K    L    G+     T +         L        +          A 
Sbjct: 456 VKENQRTPLKYTEMLIKGLGIEPLSYTPSGMPQADYNALKQLAGDVEKQQYGLIYHHFAG 515

Query: 285 R------------------------SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
           +                             +  L+E  +  GR+  ++     + TGR S
Sbjct: 516 KGEPQKGIDACIAINDLLELKSIEVLLHTFIIPLIELTDPSGRIHTSININ--TETGRLS 573

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                  N P                          L+     +R   IA +G KL+VAD
Sbjct: 574 SRNPNLLNQP-------------------------ALEKDRYKIRKSFIAKKGNKLIVAD 608

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
              +E RVLA M   +  + AF  G D +  T    F     ++ K         EL + 
Sbjct: 609 YGQLELRVLAHMTKCKAMIDAFLKGGDFHSRTVITMFPHIQEEIDK--------GELLIE 660

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           +                       +    +A        NF     +     A +     
Sbjct: 661 WDKSKGK------------APAPLVKDKYAAERRKAKVLNFSIAYGKTATGFAKDWQCEV 708

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              ++   AW  +   V +    +    +                               
Sbjct: 709 KEAQKTIDAWFAQRKEVEQWQYNVRMIAKN--------------------------QFFT 742

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK- 619
               GR          ++   +      R            +Q  + DI+   M+   K 
Sbjct: 743 QTLLGRYRYLEKYFQQQT--RSYINHGLRAAINTP------IQGGAADIVIAAMVKIYKN 794

Query: 620 -----AGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                 GY ++L VHDE++ E P+   +    ++  LM +       LPL+ +      +
Sbjct: 795 QSLKDLGYKLLLQVHDELILEGPEENAQEALKIVKELMENPFEIQLELPLEVDAKIGNNW 854


>gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/271 (28%), Positives = 106/271 (39%), Gaps = 58/271 (21%)

Query: 416 SFNVAPAQVTK--DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            F V   ++TK    R  GK+ ELALGY G   A   M                      
Sbjct: 1   MFGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMG--------------------- 39

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                              A+           +   WR  +  +++ W ++ +A  + + 
Sbjct: 40  -------------------ALAMGLSEDELPGLVSTWRNANPHITQFWWDVDEAAVRAVR 80

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN---------TTT 584
             K       R       +     L  MLPSGR L Y       +               
Sbjct: 81  ERKETQVGLIR------FQYASGILFAMLPSGRKLAYVKPRMGVNKYGRDGLTYEGVGEN 134

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
           ++  R  TYG KL ENIVQ  SRDILAE MM   KAG+ IV  VHDE V E P+  + + 
Sbjct: 135 KKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKAGFSIVFHVHDEAVLEVPEG-KSSV 193

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             +  +M   PSW  GLPL+A+GYE + Y+K
Sbjct: 194 EEVCRIMAEPPSWVHGLPLRADGYECQFYKK 224


>gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
 gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395]
          Length = 897

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 90/637 (14%), Positives = 170/637 (26%), Gaps = 128/637 (20%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVG 113
           L + L +       H   +    L       +       T + A           L  + 
Sbjct: 364 LADWLADESRPKAVHEVKWALHAL-RGRGWTL-TGVTSDTALAAYLVRPGQRTFNLDDLA 421

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                   K E+G     +    +               A  +       D  + R    
Sbjct: 422 LRYLRRELKAEDGAGDDGQLSLLDDDADAQRAADQLMLSAQAVAELADTLDTELERIDSS 481

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
            L      E  L ++   +   G  VDV    +L            +    +    V + 
Sbjct: 482 ALLQ--EMELPLSFVLADLEAAGIAVDVDHLDSLEGQFAQRVRDAAESAYEVIGEQV-NL 538

Query: 234 RCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKK--LTPQAIQVFNNRMRASRSAV 288
              ++L+  LF +  +     T+T        L+S  +    P    +  +R  A+R  V
Sbjct: 539 GSPKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTEHPFLKHLLEHR-DATRLRV 597

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             +  L + +  D R+  T     A+ TGR S      QN+P  + +             
Sbjct: 598 T-VEGLQKTVADDQRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTEAGR----------- 644

Query: 349 SITSDPDPLQIISDCVRSCVIASEG-----------KKLVVADLAGIEARVLAWMAGEQW 397
                          +R   + + G           + L+ AD + IE R++A ++ ++ 
Sbjct: 645 --------------QIRHAFVVAPGPVAVGSGNIEFESLMTADYSQIEMRIMAHLSEDEG 690

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            ++AF TGEDL+    +R+F V   QV    R+  K M   L Y               L
Sbjct: 691 LIEAFNTGEDLHNFVGSRAFGVPVDQVDPQMRSRVKAMSYGLAYG-----LSAYGLAAQL 745

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            ++      +  +  + +    ++   + E    +                         
Sbjct: 746 GISREEAKQQMEAYFDRFGGVRDYLHRVVEEARRNEYTATLF------------------ 787

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                                   +RR +P +     +          R      +  N 
Sbjct: 788 -----------------------GRRRYLPDLNSDNFQ----------RRQSAERMALNA 814

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
               T    +        K      Q  SR      ++                +V E  
Sbjct: 815 PIQGTAADIIKVAMINVQKRLRTE-QLSSR-----MLLQVHDE-----------LVIEVA 857

Query: 638 DTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
             ++     L    M         +PL+      + +
Sbjct: 858 TGEQAAVEALVREEMGGAID--LSVPLEVSVGYGRSW 892


>gi|224043967|ref|XP_002187783.1| PREDICTED: similar to polymerase (DNA directed), theta [Taeniopygia
            guttata]
          Length = 2588

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/778 (10%), Positives = 189/778 (24%), Gaps = 215/778 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---------------------LKEALEN 63
             ED+ V+  A  +                 ++                     L++ L+ 
Sbjct: 1891 CEDILVVGLAVCWGGKDAYYISLQQTQDQTEISLSLAPPPLDQSLPVTERLNHLQQYLQK 1950

Query: 64   TDVT---IVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GEA 115
                   ++     ++       L     + +    +    V        S    +    
Sbjct: 1951 KTKKERSLI----MYDFIQHYKTLLMACGISLE-GSFEDPKVACWLLDSGSKEHTLHSMV 2005

Query: 116  LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD-VTVTREIFKR 174
                  ++   + +                    +R A      +   D +    +    
Sbjct: 2006 TNFLPSELPLLEGVGTGQGVQSLGLSASRDQSGRYRAAIESVLVFNVMDQLHKELQKENL 2065

Query: 175  LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             +  S  E    Y    +   G         T  Q++  + ++++ +   L      S  
Sbjct: 2066 TDVFSKVEMPTHYCLSLLELNGIGFSTTAYETQKQVMQAKLSQIETKAYQLAGHS-FSLT 2124

Query: 235  CLEKLKTWLFLETGLH---------------------------LEDLTETTCQRVLSSNK 267
              + +   LFLE  L                                  +T + VL   K
Sbjct: 2125 SPDDIAEVLFLELKLPQNGDVKVQGNKKTLGYTRRATAKGNRVRLSKQFSTTKDVLEKLK 2184

Query: 268  KLTPQAIQVFNNRMRA-SRSAVLK-LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             L P    +   R    + + V+  L       ++ G  R        + TGR S     
Sbjct: 2185 TLHPLPGLILEWRRINNAITKVVYPLQREKRLNSALGMERIYPISQTHTATGRVSFTEPN 2244

Query: 326  PQNLPRP-----------------SRSHEELDQIITHLPTSITSDPDPLQIISDCV---- 364
             QN+PR                    +      +        +  P+ L++ +  +    
Sbjct: 2245 IQNVPRDFEIEMPTVVEESPPSQAHGNVNSHAALGGRCRKRSSILPNGLKVQAANISEER 2304

Query: 365  --------RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                    R   +   G  ++ AD + +E R+LA ++ +   ++A   G D++ +  A  
Sbjct: 2305 GIQFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSCDCRLIQALNGGTDVFKSIAAEW 2364

Query: 417  FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
              + P  V +  R   K +   + Y  G                                
Sbjct: 2365 KMIDPEAVGERTRQQAKQICYGIIYGIG-------------------------------- 2392

Query: 477  DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                              +            ++++ +++ V +   E  ++  +      
Sbjct: 2393 ------------AKSLGEQMGIDENEAANYIESFKSRYTGVQKFLRETVRSCRR------ 2434

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                +  +    GR      + +   Y   +     R+      
Sbjct: 2435 --------------------DGFVQTILGRRRYLPAIKDPNPY---SKAHAERQA----- 2466

Query: 597  LTENIVQAVSRDILAEGMMNATKA------------------------------------ 620
                 VQ  + DI+    +N  K                                     
Sbjct: 2467 -VNTTVQGSAADIVKTATVNIQKRLEAFPSVFKSHGHLESSFQRDKTGRLSRKRNTGMLH 2525

Query: 621  ---GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
               G   +L +HDE++ E  + D    + +    M +       + L  +      + 
Sbjct: 2526 PIRGGFFILQLHDELLYEVAEDDVIQVAQIVKREMENAIK--LSVKLDVKVKIGPSWG 2581


>gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4]
 gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4]
          Length = 915

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 99/662 (14%), Positives = 180/662 (27%), Gaps = 130/662 (19%)

Query: 28  VCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
             V   A    D            P     L + L +       H + +    L      
Sbjct: 363 GDVTALAIAASDGECAYIAASTATPEDEAALGDWLADASQPKALHEAKWAIHAL-RGRGW 421

Query: 87  DIPIHRWICTLVLARSNGLPS---ALKAVG-EALKLSSQKMEEGKELIARFCKGETHECL 142
            +       T + A           L  +    LK   +    G+E ++     E     
Sbjct: 422 TL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTE----- 475

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLEPLSSKEQELWYL--DQTINDRGYC 198
                        +       D+      E+          + EL        I   G  
Sbjct: 476 ---QLDAEAAETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATGIA 532

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
           VD A  H L      +          +    + +    ++L+  LF E  +     T+T 
Sbjct: 533 VDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTKTG 591

Query: 259 ---CQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
                  L         P    +  +R  A+R  V  ++ L++A+  DGR+  T     A
Sbjct: 592 YTTDAEALQGLFDKTGHPFLEHLLAHR-DATRMKVT-VDGLLKAVAEDGRIHTTFNQTVA 649

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR S      QN+P  + +  E                         +R   +  +G
Sbjct: 650 A-TGRLSSTDPNLQNIPVRNDAGRE-------------------------IRDGFVVGQG 683

Query: 374 K-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              L+ AD + IE R++A ++G++  ++AF TGEDL+    +R+F V   +VT + R   
Sbjct: 684 FDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRV 743

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K M   L Y             + L ++T     + ++    +    ++   + E   + 
Sbjct: 744 KAMSYGLAYG-----LSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKD 798

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                  G             +S   +      +A       G A    K   + +    
Sbjct: 799 GYTSTLYGRRRYLP-----DLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKAL 853

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
            +                                                       L  
Sbjct: 854 AEAG-----------------------------------------------------LKS 860

Query: 613 GM-MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESK 671
            M +        +VL V            E   +++   M +       +PL       +
Sbjct: 861 RMLLQVHDE---LVLEV-------VASELEEVTALVKDKMATAIE--LSVPLDVSVGTGR 908

Query: 672 RY 673
            +
Sbjct: 909 SW 910


>gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus]
          Length = 894

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 95/677 (14%), Positives = 185/677 (27%), Gaps = 134/677 (19%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVT 67
            ET+S       G+    +D   + F                        +  L +    
Sbjct: 336 IETQSAASPHGLGLTVETQDGKPVGFGLA-SATEAVTLPWQEGRADYAPFERWLASDA-P 393

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKME 124
            V  ++  +   ++    L +        LV            +L A+     +      
Sbjct: 394 KVMSDAKVQVKAMRRA-GLRVQGLA-FDVLVAGWLLRPGFTDKSLAALVSRYLMEDLPEP 451

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFG-EYCKGDVTVTREIFKRLEPLSSKEQ 183
           +  +L+                     EAW     E+   +V   R +      +   E 
Sbjct: 452 DANQLVPETEALTAPV-----------EAWYTLRVEHALREVLDERTLGV----MVDIEM 496

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
               +   +  RG   D A    L+  +    T L +   +     + +    ++L+  L
Sbjct: 497 PTLLVLVEMELRGVATDRAGLAELSAQLQERITGLAERAFAEIGKEI-NLGSPKQLQEVL 555

Query: 244 FLETGLHLEDLTE---TTCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           F + G+      +   +T    L+        P    +  +R  +    +  + TL   +
Sbjct: 556 FDQLGMPKTRANKTGFSTDAGALADLQASNPHPFLDLLLEHRDASKLRQI--IQTLERGI 613

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             D R+  T      + TGR S      QN+P  +                         
Sbjct: 614 GDDERIHTT-YVQTGTTTGRISSNDPNLQNIPVRTEEGRR-------------------- 652

Query: 359 IISDCVRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                +RS +   EG   L+ AD + IE R++A ++G+   ++AFE GEDL+    +  F
Sbjct: 653 -----IRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFEVGEDLHRFVGSSIF 707

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            V PA V+   R   K M   L Y            +  L + +             +  
Sbjct: 708 GVEPADVSPAMRTKVKAMSYGLAYG-----LSAFGLSKQLRIPSSEAKQLMTDYFARFGA 762

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
             ++ R + E        +   G         +   +S    L +   +A       G A
Sbjct: 763 VRDYLRQVVEEARAAGYTETIFGRRRP-----FPDLNSPNRVLRDNAERAALNAPIQGSA 817

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
               K   + +    ++                                           
Sbjct: 818 ADIMKIAMIRIEADMRE------------------------------------------- 834

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPS 656
                    RD+ +  ++              DE++ E    +      +    M     
Sbjct: 835 ---------RDMASRMLLQVH-----------DELILEVAPGEWDALQAIVTDRMAHAAD 874

Query: 657 WAKGLPLKAEGYESKRY 673
               +PL+ +      +
Sbjct: 875 --LRVPLEVQVGRGDSW 889


>gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
          Length = 2215

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 93/642 (14%), Positives = 176/642 (27%), Gaps = 193/642 (30%)

Query: 91   HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN- 149
                 TL+ A+                     M  G +L+    +             + 
Sbjct: 1704 GPIFDTLIAAKVVEAG---------------VMGTGFKLLQVVERFLGVLMDKRMQASDW 1748

Query: 150  -HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCV 199
                  +    Y   D  V   + +RL+           +D  +            G  +
Sbjct: 1749 SSPHLSQEQLLYAARDAAVMLPLQQRLQRKLEAYDLQEVMDVEMRCLRPVVAMELNGMQI 1808

Query: 200  DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWLFLETGLHLE----- 252
            + A    L   +  E  K  + L +  +   ++      +++   L    G+        
Sbjct: 1809 EHARWKELEAHLRKEEVKARKRLAAELHVDETTVNFNSQKQMLDAL-RAIGIPSPPPDRP 1867

Query: 253  ----------------------------DLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
                                         L + T    L+      P    + + R +A+
Sbjct: 1868 ASRSRGARPSAFSEQRGLGFDQPAELEDTLLKDTSDGTLARL-TQYPAVQALRDYR-KAA 1925

Query: 285  RSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            ++    ++ L + +NS  G++  +L   GA   GR+S      Q +PR            
Sbjct: 1926 KAITTFVDKLPQHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPR------------ 1972

Query: 344  THLPTSITSDPDPLQIISDCVRSCVIA------SEGKKLVVADLAGIEARVLAWMAGEQW 397
                                 R+C +         G K ++AD + IE R+ A +A ++ 
Sbjct: 1973 -----------------ERRFRACFVPSAKVAGRPG-KFIIADFSQIELRIAADLACDER 2014

Query: 398  KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
             ++A++ GEDL+  T +   N   + ++K  R + K +   L Y   A  F+  AS+   
Sbjct: 2015 MIEAYQKGEDLHKLTASLILNKPASTLSKADRQLAKAVNFGLIYGMSADRFRGYASS--- 2071

Query: 458  NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
                                               A                +   ++ +
Sbjct: 2072 -----------------------------------AYGVQMTPQEARAFHAKYFSSYAGI 2096

Query: 518  SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
            +           Q  E  +    R  R     Y                           
Sbjct: 2097 TRWHQ------RQKAEQPRETRTRAGRRALFDYFAFT----------------------- 2127

Query: 578  SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633
                              K     +Q  S DI  E ++         G  +V+ VHDEI+
Sbjct: 2128 ------------------KSLNYPIQGTSADITKESLVRLQDKLAPLGGRLVMCVHDEII 2169

Query: 634  CETPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673
             E P+        +L   M +    + + +P  AEG  +  +
Sbjct: 2170 AEVPEDKAEEGLRILIETMEAAGNKFLRFVPCVAEGAIADSW 2211



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 14   IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---VMPQVLKEALENTDVTIVA 70
            +D+   G+  Y+    V L      D P  L+D    P      + ++  L +  +  V 
Sbjct: 1530 VDVETTGLDPYS--ARVRLLQLALPDFPTLLFDLFALPVSSPSLRAVRLLLASPRIRKVF 1587

Query: 71   HNSYFERTVLK 81
            HN  F+   L 
Sbjct: 1588 HNGKFDLCFLA 1598


>gi|309808033|ref|ZP_07701952.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a]
 gi|308168716|gb|EFO70815.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a]
          Length = 302

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/405 (14%), Positives = 115/405 (28%), Gaps = 116/405 (28%)

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +  + S+     +N L++ + +DG++         + TGR S      QN+P      +
Sbjct: 1   MDYRQISKIQSTYINGLLDYIQADGKIHTRFLQ-TLTTTGRLSSVEPNLQNIPVKLEEGK 59

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQ 396
                                     +R   +   +   L   D + +E RVLA ++ E+
Sbjct: 60  -------------------------QIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEK 94

Query: 397 WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
             L+AF+ G D++  T  + F ++   +VT   R   K +                    
Sbjct: 95  NMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVN--------------FGIVY 140

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G++                                  A          +     + +++ 
Sbjct: 141 GISD------------------------------YGLAKNLGISRQEAQNFINNYFEQYP 170

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           ++ +       A +   E G A                            R  +  D+ N
Sbjct: 171 QIKDYMK---AAVKLAREKGYAETIMH-----------------------RRRLLPDIHN 204

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVH 629
                        R            +Q  + DI+   M+         K    ++L +H
Sbjct: 205 KNF---NIRSFAERTAINSP------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIH 255

Query: 630 DEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           DE++ + P  +      L   +M         +PL A+      +
Sbjct: 256 DELLFDVPSEELDLIRTLVPKIMQQAAQ--LDVPLIADANWGHNW 298


>gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 932

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 82/601 (13%), Positives = 171/601 (28%), Gaps = 121/601 (20%)

Query: 90  IHRWICTLVLARSNGLPSALKAV--GEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 T +             +    A  L     E+ +         +  +    RN 
Sbjct: 433 PKPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHIEEQSEGATQGTLDFDEPDDSAQRND 492

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
                   + G   +       +  ++   L S E  +  +   +   G  VD+    ++
Sbjct: 493 NQLPRHTAIVGLLARKLADSLDQ-REQFSLLESVEIPVSRVLYGMEHAGAQVDMNRLMSM 551

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVL 263
            + +  +     QE      G   + +  ++L+  LF + GL     T+T    T    L
Sbjct: 552 REQLAAD-ANYAQETAWQYAGERVNLQSPKQLQKILFEDMGLKPTKKTKTGSYTTNAAAL 610

Query: 264 SSNKKLT-------PQAIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLRGTLQFLGASR 315
              +  +            +  +R +     +  + TL++A N SDGR+  T +   A+ 
Sbjct: 611 QVLRDRSCGNDRACQFLDALLLHREKNKLKQI--VQTLIDATNRSDGRIHTTFEQTVAA- 667

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P    +  E                         +RS  +  EG +
Sbjct: 668 TGRLSSVDPNLQNIPNRDPAGRE-------------------------IRSAFVPGEGFE 702

Query: 376 -LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+ +D + +E R++A ++G++  ++AF +G D +    +  + V   ++T DQR+  K 
Sbjct: 703 SLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITPDQRSHVKA 762

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
           M   L Y            +  L +               +     +   +  +  E   
Sbjct: 763 MSYGLAYG-----LSTYGLSQQLGIKPGEAESLKRQYFATFGKVHEYLESLVSSAREKGY 817

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +   G          R+    +      +  A E+                        
Sbjct: 818 TETIYGR---------RRYFPGLKSPNRAVRDAAERAA---------------------- 846

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
                        L     G+    +     +                  ++  I+    
Sbjct: 847 -------------LNAPIQGSAADIMKIAMIRADDALREA---------GLASRII---- 880

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           +                +V E    +     +++   M      A  +PL         +
Sbjct: 881 LQIHDE-----------LVVEVAPGEAERVTALVKDAMEHAVDMA--VPLDVSTGIGSDW 927

Query: 674 R 674
           +
Sbjct: 928 Q 928


>gi|296081899|emb|CBI20904.3| unnamed protein product [Vitis vinifera]
          Length = 2091

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 92/723 (12%), Positives = 179/723 (24%), Gaps = 191/723 (26%)

Query: 29   CVILFAFGFDDHPVELWDCVHD--------------------PVMPQ------------- 55
             +   A  +++ PV   +   D                    P +               
Sbjct: 1422 EIHGIAICWENSPVYYINLPKDLLCSDERKNIYLTMNVSDDKPNILDANHRLEAAKWRWS 1481

Query: 56   VLKEALENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICTLVL-----ARSN 103
             + + +   DV     N   +  VLK          +L++ +     T+ L     +   
Sbjct: 1482 KVGKIMGKKDVRKFTWNLKVQIQVLKNPAVSIQKFGSLNLAMR----TMGLELIDNSYLM 1537

Query: 104  GLP----SALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP--NHREAWRL 156
              P      L       +    ++      L     K  + E     N+      +  R 
Sbjct: 1538 LSPVYIVDGLDMCIVTWILWPDEERSSNPNLEKEVRKRLSSEAAAAANRSGRWKNQTRRA 1597

Query: 157  FGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHT 206
                C   V  TR +   L  L             E  L  +   +   G  VD+     
Sbjct: 1598 AHNGCCRRVAQTRALCSVLWKLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQ 1657

Query: 207  LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE---TTCQ 260
               ++  +   L++E   L      S      +   L+    L +    +  +   +T +
Sbjct: 1658 ARNVLGKKLRHLEKEAYELAGMT-FSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDK 1716

Query: 261  RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFLGASRT 316
              L   +   P    +  +R  A        +      +        L G      ++ T
Sbjct: 1717 HCLDLLRHEHPIIPVIKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQ-TSTAT 1775

Query: 317  GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKK 375
            GR S      Q +        E       +  +               R   + S E   
Sbjct: 1776 GRLSMEEPNLQCV--------EHVVEFKMIKGNKDVCNSEADHYKINARDFFVPSQENWL 1827

Query: 376  LVVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            L+ AD + IE R++A  + +    +   +   D++    A+      + V   +R   K 
Sbjct: 1828 LLTADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKR 1887

Query: 435  MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
            +   +                                                     A 
Sbjct: 1888 LVYGIL--------------------------------------------YGMGANTLAK 1903

Query: 495  EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
            +        E   +++R     V+   +          +     +  ++R +  +     
Sbjct: 1904 QLECSLGEAEEKIRSFRSSFPGVASWLH--EAVACCCKKGYVKTLKGRKRFLSKIKFGTS 1961

Query: 555  KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
            K  L                           +  R+         +I Q  + DI+   M
Sbjct: 1962 KEKL---------------------------KARRQA------VNSICQGSAADIIKIAM 1988

Query: 615  MNAT-----------------------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-L 650
            +N                         K    I+L VHDE+V E   +    A +L    
Sbjct: 1989 INIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKMT 2048

Query: 651  MTS 653
            M +
Sbjct: 2049 MEN 2051


>gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem]
 gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem]
          Length = 608

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 105/696 (15%), Positives = 191/696 (27%), Gaps = 171/696 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET          +  Y  D  + L  FG +     +               AL
Sbjct: 36  RILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGAFVGAAVTAL 86

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111
           +      V HN+ F+  V++    + +     +   T + +                L+ 
Sbjct: 87  Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +   +     EE K  +AR  K        D+           +  Y   D  +   +
Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202

Query: 172 FKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             ++ PL           E +L  +   +   G+ +DV  +  L+  +  +         
Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKAEHYTAVAR 262

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279
                 V S    EKL   L   TG+ ++  T T  ++V    L +  +      +    
Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIE 319

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +        +   +E  ++D R+   +  L A RTGR S      QNLP         
Sbjct: 320 AKKWGSWEKTWVRNFIERRDADDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGD------ 372

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   VR C +A  G+ +V  D    E RVLA +A +    
Sbjct: 373 ----------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAALAND---- 406

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                                                            + M        
Sbjct: 407 -------------------------------------------------RTMIRAFEEEA 417

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +             +     NF         + A          ++V   +   +  V++
Sbjct: 418 DLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTD 477

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           L   L +                             N   ++ P+GR L           
Sbjct: 478 LSKSLQREA--------------------------ANLGYVVTPTGRRLPVDPDR----- 506

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV--LTVHDEIVCETP 637
                         G      +VQ+ SRD+ A  ++    AG   +  L +HDE++   P
Sbjct: 507 --------------GYAALNYMVQSTSRDVTASAVLRLHDAGLTPMIRLVIHDEVLASVP 552

Query: 638 DTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
           + +    A  +  +M       +G+ +  +     R
Sbjct: 553 EAEAEVTAKEIGRIMEQTF---RGVLINTDPEVGGR 585


>gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG]
 gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG]
          Length = 608

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 113/696 (16%), Positives = 206/696 (29%), Gaps = 171/696 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET         G+  Y +   + L  FG +     +       V       AL
Sbjct: 36  RILGLDTETT--------GLNIYQDAFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTAL 86

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111
           +      V HN+ F+  V++    + +     +   T + +                L+ 
Sbjct: 87  Q-KVQRFVIHNAAFDLQVIERMLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +   +     EE K  +AR  K        D+           +  Y   D  +   +
Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202

Query: 172 FKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             ++ PL           E +L  +   +   G+ +DV  +  L+  +  +         
Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR 262

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279
                 V S    EKL   L   TG+ ++  T T  ++V    L +  +      +    
Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIE 319

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +        +   +E  +++ R+   +  L A RT R S      QNLP         
Sbjct: 320 AKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTNNPSAQNLPAGD------ 372

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   VR C +A  G+ +V  D    E RVLA +A ++  +
Sbjct: 373 ----------------------WMVRRCFLADSGQLMVSVDYQAQELRVLAALANDRTMI 410

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+   DL+  T            +   R +GK++  A  +  G       A       
Sbjct: 411 QAFKDNADLHQITA---------DASGVDRKVGKMVNFAYVFGSGPSTIAAQA------- 454

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       +RV   + Q +  V+ 
Sbjct: 455 -------------------------------------GITFPEAKRVIAGFEQSYPEVTA 477

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           L   L +                             N   ++ P+GR L           
Sbjct: 478 LSKSLQREA--------------------------ANLGYVITPTGRRLPVDPDR----- 506

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV--LTVHDEIVCETP 637
                         G      +VQ+ SRD+ A  ++   +AG   +  L +HDE++   P
Sbjct: 507 --------------GYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLASVP 552

Query: 638 DTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
           + +    A  +  +M       +G+ +  +     R
Sbjct: 553 EAEAEVTAKEIGRIMEQTF---RGVLINTDPEVGGR 585


>gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley]
 gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley]
          Length = 608

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 104/696 (14%), Positives = 193/696 (27%), Gaps = 171/696 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET         G+  Y +D  + L  FG +     +               AL
Sbjct: 36  RILGLDTETT--------GLNIYQDDFGIRLIQFG-NPWESWVLPVERGGAFVGAAVTAL 86

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111
           +      V HN+ F+  V++    + +     +   T + +                L+ 
Sbjct: 87  Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +   +     EE K  +AR  K        D+           +  Y   D  +   +
Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202

Query: 172 FKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             ++ PL           E +L  +   +   G+ +DV  +  L+  +  +         
Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR 262

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279
                 V S    EKL   L   TG+ ++  T T  ++V    L +  +      +    
Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIE 319

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +        +   +E  +++ R+   +  L A RT R S      QNLP         
Sbjct: 320 AKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLPAND------ 372

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   VR C +A  G+ +V  D    E RVLA +A +    
Sbjct: 373 ----------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAALAND---- 406

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                                                            + M        
Sbjct: 407 -------------------------------------------------RTMIRAFEEEA 417

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +             +     NF         + A          ++V   +   +  V++
Sbjct: 418 DLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTD 477

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           L   L +                             N   ++ P+GR L           
Sbjct: 478 LSKSLQREA--------------------------ANLGYVVTPTGRRLPVDPDR----- 506

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-YDIV-LTVHDEIVCETP 637
                         G      +VQ+ SRD+ A  ++    AG   ++ L +HDE++   P
Sbjct: 507 --------------GYAALNYMVQSTSRDVTASAVLRLHDAGLAPMIRLVIHDEVLASVP 552

Query: 638 DTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
           + +    A  +  +M       +G+ +  +     R
Sbjct: 553 EAEAEVTAKEIGRIMEQTF---RGVLINTDPEVGGR 585


>gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12]
 gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12]
          Length = 595

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 106/677 (15%), Positives = 196/677 (28%), Gaps = 168/677 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET         G+  Y++     L  FG       +        +P+ + EAL  
Sbjct: 38  LAVDTETT--------GLDIYSDTFRCRLVQFGTQS-EAWVLPVELGGGIPENVIEALYE 88

Query: 64  TDVTIVAHNSYFERTVLKA--CFNLDIPIHRWICTLVLARSNGL--------PSALKAVG 113
            D   V  N+ ++  VL       ++    + + T +LA+              +L+ + 
Sbjct: 89  VDKL-VMQNASYDLQVLDQIGYAAMEDLWPKVLDTQILAKLVDPRPFEAGGFGHSLEELI 147

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
               +  ++ E  K L+ +  K         +           +  Y   D   T  I  
Sbjct: 148 AEF-IDKEQAENVKGLMTKLAKEHKTT--KAKIWSTIDLFHPEYLTYAGMDTIFTARICS 204

Query: 174 RLEPLSS--------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +L PL           E +L  +   I+ +G+ +DV  A  L+     E++  D    + 
Sbjct: 205 KLAPLVPDVSRSLVPYEHKLSEICSYIDRKGFLLDVEYAQALSDKWLYEKSVWDAIAFTE 264

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRM 281
               + +    ++    L  E G+ ++  TE+        +L S      +   +     
Sbjct: 265 YG--LENVNSTDQCADAL-EEMGVKIKGRTESGKRQVNDDLLQSLSDDGNELAAIIQEAK 321

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           +  +     +   +   +S+ R    +  L A RT R S    P Q LP           
Sbjct: 322 KLGKWNKTWVAKFLSVRDSEDRCHTFVNPLQA-RTSRMSITGIPAQTLP----------- 369

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 VR C +A  G+ +   D    E RVLA ++G+      
Sbjct: 370 -----------------ASDWIVRRCFVADPGQVMASVDYQTQELRVLAALSGD------ 406

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
                                                          Q M        + 
Sbjct: 407 -----------------------------------------------QTMIEAFKTGADL 419

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                  +    +     NF           A +        +RV   + + +  V+   
Sbjct: 420 HQMTADASQVVRKVGKMANFLTVYGGGAKTLAEQAHIDFPTAKRVLDGFAKTYPGVARYS 479

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
            +L     +   NG                        ++   GR L    V ++R+Y  
Sbjct: 480 KKL---AMEAGRNGY-----------------------IVNAMGRRLP---VDSSRTY-- 508

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDT 639
                              ++Q+ SRD+    ++   +AG+   + L +HDE+V   P  
Sbjct: 509 --------------SALNYMIQSSSRDVTCRALIRLHEAGFTPYLRLPIHDEVVASLPAG 554

Query: 640 DEFN-ASMLYHLMTSNP 655
                A  +  LM    
Sbjct: 555 QAEWGAKEIARLMQEEM 571


>gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5]
 gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5]
          Length = 608

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 104/696 (14%), Positives = 192/696 (27%), Gaps = 171/696 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET         G+  Y +D  + L  FG +     +               AL
Sbjct: 36  RILGLDTETT--------GLNIYQDDFGIRLIQFG-NPWESWVLPVERGGAFVGAAVTAL 86

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111
           +      V HN+ F+  V++    + +     +   T + +                L+ 
Sbjct: 87  Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +   +     EE K  +AR  K        D+           +  Y   D  +   +
Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202

Query: 172 FKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             ++ PL           E +L  +   +   G+ +DV  +  L+  +  +         
Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR 262

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279
                 V S    EKL   L   TG+ ++  T T  ++V    L +  +      +    
Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIE 319

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +        +   +E  +++ R+   +  L A RT R S      QNLP         
Sbjct: 320 AKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLPAND------ 372

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   VR C +A  G+ +V  D    E RVLA +A +    
Sbjct: 373 ----------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAALAND---- 406

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                                                            + M        
Sbjct: 407 -------------------------------------------------RTMIRAFEEEA 417

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +             +     NF         + A          ++V   +   +  V++
Sbjct: 418 DLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTD 477

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           L   L +                             N   ++ P+GR L           
Sbjct: 478 LSKSLQREA--------------------------ANLGYVVTPTGRRLPVDPDR----- 506

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV--LTVHDEIVCETP 637
                         G      +VQ+ SRD+ A  ++    AG   +  L +HDE++   P
Sbjct: 507 --------------GYAALNYMVQSTSRDVTASAVLRLHDAGLTPMIRLVIHDEVLASVP 552

Query: 638 DTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
           + +    A  +  +M       +G+ +  +     R
Sbjct: 553 EAEAEVTAKEIGRIMEQTF---RGVLINTDPEVGGR 585


>gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50]
          Length = 263

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 103/365 (28%), Gaps = 113/365 (30%)

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QN+P  +                              +R   IA E   
Sbjct: 1   TGRLSSTDPNLQNIPVRNEEGRR-------------------------IRQAFIAPEDYV 35

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +QR   K +
Sbjct: 36  IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAI 95

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                               G++                                  A +
Sbjct: 96  NF--------------GLIYGMS------------------------------AFGLARQ 111

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                   ++    + +++  V E         ++                         
Sbjct: 112 LNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKE------------------------- 146

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +    GR L   D+ ++         +               +Q  + DI+   M+
Sbjct: 147 -QGYVETLDGRRLYLPDIKSSNGARRAAAER---------AAINAPMQGTAADIIKRAMI 196

Query: 616 NATKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGY 668
                         +++ VHDE+V E    D    +  ++ LM +       +PL  E  
Sbjct: 197 AVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVG 254

Query: 669 ESKRY 673
             + +
Sbjct: 255 SGENW 259


>gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 704

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/640 (15%), Positives = 177/640 (27%), Gaps = 190/640 (29%)

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN- 149
                TL+ A+                     M  G +L+    +             + 
Sbjct: 194 GPLFDTLIAAKVVEAG---------------VMRTGFKLLQVVERFLGVLMDKRMQASDW 238

Query: 150 -HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCV 199
                 +    Y   D  V   + +RL+           +D  +            G  +
Sbjct: 239 SSPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 298

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWL-------------- 243
           D A    L   +  E  K  Q L +  +   ++      +++   L              
Sbjct: 299 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 358

Query: 244 ---------FLETGLHLED--------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                    F E  L  +         L + T    L+      P    + + R +A+++
Sbjct: 359 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLS-QFPAVQALRDYR-KAAKA 416

Query: 287 AVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               ++ L E +NS  G++  +L   GA   GR+S      Q +PR              
Sbjct: 417 ITTFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPR-------------- 461

Query: 346 LPTSITSDPDPLQIISDCVRSCVIA------SEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                              R+C +         G K ++AD + IE R+ A +A ++  +
Sbjct: 462 ---------------ERRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMI 505

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +A+  GEDL+  T +   N  P+ ++K  R + K +   L Y   A  F+  AS+     
Sbjct: 506 EAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS----- 560

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A                +   +  ++ 
Sbjct: 561 ---------------------------------AYGVEMSLQEARDFHAKYFSSYPGITR 587

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                     Q  E  +    R  R     Y                             
Sbjct: 588 WHR------RQKAEQPRETRTRAGRRALFEYFAFT------------------------- 616

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635
                           K     +Q  S DI  E ++         G  +V+ VHDEI+ E
Sbjct: 617 ----------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAE 660

Query: 636 TPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673
            P+        +L   M +    + + +P  AEG  +  +
Sbjct: 661 VPEEKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 700



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 13/79 (16%)

Query: 6  IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALE 62
          +D ET      +            + L      D P  L+D    PV    L+     L 
Sbjct: 3  VDVETTGLDPFS----------ARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 52

Query: 63 NTDVTIVAHNSYFERTVLK 81
          +  +  V HN  F+   L 
Sbjct: 53 SPRIRKVFHNGQFDLCFLA 71


>gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 704

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/640 (15%), Positives = 177/640 (27%), Gaps = 190/640 (29%)

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN- 149
                TL+ A+                     M  G +L+    +             + 
Sbjct: 194 GPLFDTLIAAKVVEAG---------------VMRTGFKLLQVVERFLGVLMDKRMQASDW 238

Query: 150 -HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCV 199
                 +    Y   D  V   + +RL+           +D  +            G  +
Sbjct: 239 SSPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 298

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWL-------------- 243
           D A    L   +  E  K  Q L +  +   ++      +++   L              
Sbjct: 299 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 358

Query: 244 ---------FLETGLHLED--------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                    F E  L  +         L + T    L+      P    + + R +A+++
Sbjct: 359 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLS-QFPAVQALRDYR-KAAKA 416

Query: 287 AVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               ++ L E +NS  G++  +L   GA   GR+S      Q +PR              
Sbjct: 417 ITTFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPR-------------- 461

Query: 346 LPTSITSDPDPLQIISDCVRSCVIA------SEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                              R+C +         G K ++AD + IE R+ A +A ++  +
Sbjct: 462 ---------------ERRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMI 505

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +A+  GEDL+  T +   N  P+ ++K  R + K +   L Y   A  F+  AS+     
Sbjct: 506 EAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS----- 560

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A                +   +  ++ 
Sbjct: 561 ---------------------------------AYGVEMSLQEARDFHAKYFSSYPGITR 587

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                     Q  E  +    R  R     Y                             
Sbjct: 588 WHR------RQKAEQPRETRTRAGRRALFEYFAFT------------------------- 616

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635
                           K     +Q  S DI  E ++         G  +V+ VHDEI+ E
Sbjct: 617 ----------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAE 660

Query: 636 TPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673
            P+        +L   M +    + + +P  AEG  +  +
Sbjct: 661 VPEEKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 700



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 13/79 (16%)

Query: 6  IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALE 62
          +D ET      +            + L      D P  L+D    PV    L+     L 
Sbjct: 3  VDVETTGLDPFS----------ARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 52

Query: 63 NTDVTIVAHNSYFERTVLK 81
          +  +  V HN  F+   L 
Sbjct: 53 SPRIRKVFHNGQFDLCFLA 71


>gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 704

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/640 (15%), Positives = 177/640 (27%), Gaps = 190/640 (29%)

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN- 149
                TL+ A+                     M  G +L+    +             + 
Sbjct: 194 GPLFDTLIAAKVVEAG---------------VMRTGFKLLQVVERFLGVLMDKRMQASDW 238

Query: 150 -HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCV 199
                 +    Y   D  V   + +RL+           +D  +            G  +
Sbjct: 239 SSPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 298

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWL-------------- 243
           D A    L   +  E  K  Q L +  +   ++      +++   L              
Sbjct: 299 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 358

Query: 244 ---------FLETGLHLED--------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                    F E  L  +         L + T    L+      P    + + R +A+++
Sbjct: 359 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLS-QFPAVQALRDYR-KAAKA 416

Query: 287 AVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               ++ L E +NS  G++  +L   GA   GR+S      Q +PR              
Sbjct: 417 ITTFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPR-------------- 461

Query: 346 LPTSITSDPDPLQIISDCVRSCVIA------SEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                              R+C +         G K ++AD + IE R+ A +A ++  +
Sbjct: 462 ---------------ERRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMI 505

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +A+  GEDL+  T +   N  P+ ++K  R + K +   L Y   A  F+  AS+     
Sbjct: 506 EAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS----- 560

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A                +   +  ++ 
Sbjct: 561 ---------------------------------AYGVEMSLQEARDFHAKYFSSYPGITR 587

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                     Q  E  +    R  R     Y                             
Sbjct: 588 WHR------RQKAEQPRETRTRAGRRALFEYFAFT------------------------- 616

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635
                           K     +Q  S DI  E ++         G  +V+ VHDEI+ E
Sbjct: 617 ----------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAE 660

Query: 636 TPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673
            P+        +L   M +    + + +P  AEG  +  +
Sbjct: 661 VPEEKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 700



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 13/79 (16%)

Query: 6  IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALE 62
          +D ET      +            + L      D P  L+D    PV    L+     L 
Sbjct: 3  VDVETTGLDPFS----------ARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 52

Query: 63 NTDVTIVAHNSYFERTVLK 81
          +  +  V HN  F+   L 
Sbjct: 53 SPRIRKVFHNGQFDLCFLA 71


>gi|298706211|emb|CBJ29252.1| DNA polymerase [Ectocarpus siliculosus]
          Length = 1219

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/547 (15%), Positives = 142/547 (25%), Gaps = 137/547 (25%)

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E     +   +   G           +  +      L +       G   +    +
Sbjct: 744  CEQVEMPAIPVLAGMEVSGVVFLPERVTRFSDALGNHLEGLKRTAVKAVGGRDFNLASPD 803

Query: 238  KLKTWLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++   LF    L         +  +T   VL   +        +   R   ++     ++
Sbjct: 804  QVADVLFKHLKLPSPPVKAGSVHASTSAEVLEGLQGKHAVVAPILEFR-GVNKYKTTYVD 862

Query: 293  TLVEAMNSDG---------------RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             L E                     R+  T     ++RTGR S      Q +P+ S    
Sbjct: 863  KLAERALGAAAAESAVPASQGAGAARIHATWNQ-TSARTGRLSCSRPNLQQMPKGSDP-- 919

Query: 338  ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                 +    VR    A+    L+ AD + IE RVLA    +  
Sbjct: 920  ------------------LAGVEGVNVRDAFSATRSFTLMAADYSQIEMRVLADACRDPG 961

Query: 398  KLK------------AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
                           A   G D+Y    A+ F      V+ ++R   KV+ L + Y  G 
Sbjct: 962  LRNLFATLGGTNDAGASTGGGDVYRKLAAQVFAKEEHGVSDEERNRAKVVCLGITYGMGT 1021

Query: 446  KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                       L +          S  + +   E F    +             GT C  
Sbjct: 1022 PQV-----AKKLEITESQAQGLVRSFLKAFPGIEPFMAATRR-----------YGTPCRH 1065

Query: 506  VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
                 R                     ENG                            +G
Sbjct: 1066 QISQRR------------------FARENGYVCTL-----------------------TG 1084

Query: 566  RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----- 620
            R     ++ N+R+       Q  R+         ++VQ  + DI+   M+   +      
Sbjct: 1085 RRRHLPEINNSRNA--AAKAQAERQA------VNSVVQGTAADIMKTAMVLVARRLDAWR 1136

Query: 621  -----GY---DIVLTVHDEIVCETP--DTDEFNAS-MLYHLMTSNPSWAKGL--PLKAEG 667
                 G     +++ +HDE+V E P  + D      +L   M        G+  PL    
Sbjct: 1137 SSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIKCPLTVNM 1196

Query: 668  YESKRYR 674
                 + 
Sbjct: 1197 LVGMSWG 1203


>gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii]
          Length = 2579

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/640 (15%), Positives = 177/640 (27%), Gaps = 190/640 (29%)

Query: 91   HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN- 149
                 TL+ A+                     M  G +L+    +             + 
Sbjct: 2069 GPLFDTLIAAKVVEAG---------------VMRTGFKLLQVVERFLGVLMDKRMQASDW 2113

Query: 150  -HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCV 199
                  +    Y   D  V   + +RL+           +D  +            G  +
Sbjct: 2114 SSPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 2173

Query: 200  DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWL-------------- 243
            D A    L   +  E  K  Q L +  +   ++      +++   L              
Sbjct: 2174 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 2233

Query: 244  ---------FLETGLHLED--------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                     F E  L  +         L + T    L+      P    + + R +A+++
Sbjct: 2234 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLS-QFPAVQALRDYR-KAAKA 2291

Query: 287  AVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                ++ L E +NS  G++  +L   GA   GR+S      Q +PR              
Sbjct: 2292 ITTFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPR-------------- 2336

Query: 346  LPTSITSDPDPLQIISDCVRSCVIA------SEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                               R+C +         G K ++AD + IE R+ A +A ++  +
Sbjct: 2337 ---------------ERRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMI 2380

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +A+  GEDL+  T +   N  P+ ++K  R + K +   L Y   A  F+  AS+     
Sbjct: 2381 EAYRKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS----- 2435

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                             A                +   +  ++ 
Sbjct: 2436 ---------------------------------AYGVEMSLQEARDFHAKYFSSYPGITR 2462

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                      Q  E  +    R  R     Y                             
Sbjct: 2463 WHR------RQKAEQPRETRTRAGRRALFEYFAFT------------------------- 2491

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCE 635
                            K     +Q  S DI  E ++         G  +V+ VHDEI+ E
Sbjct: 2492 ----------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAE 2535

Query: 636  TPDTDEFN-ASMLYHLMTSNP-SWAKGLPLKAEGYESKRY 673
             P+        +L   M +    + + +P  AEG  +  +
Sbjct: 2536 VPEEKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 2575



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 13/79 (16%)

Query: 6    IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---ALE 62
            +D ET      +            + L      D P  L+D    PV    L+     L 
Sbjct: 1878 VDVETTGLDPFS----------ARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 1927

Query: 63   NTDVTIVAHNSYFERTVLK 81
            +  +  V HN  F+   L 
Sbjct: 1928 SPRIRKVFHNGQFDLCFLA 1946


>gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
 gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171]
          Length = 943

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 81/634 (12%), Positives = 169/634 (26%), Gaps = 126/634 (19%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV---- 112
           L+  L+     IV H    +  +L +   LD+    W  T +            ++    
Sbjct: 416 LQRFLDGHADRIVVHGYKEQSHILAS-LGLDLA-EPWFDTKLAGYLVQPDYHADSLEQAA 473

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              L+L     ++  +                                 K D      + 
Sbjct: 474 SHFLQLQLDNADDVAQGQLDLSGDVDPADQRKDLLHMAMVRALADMLAAKIDEREQFRLL 533

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           + +E        + ++   +   G  VD      +     ++     +         V +
Sbjct: 534 QSIE------LPVSHVLFGMEQVGASVDFMRLTEMRDRFAIDARDAQETAWQFAGSRV-N 586

Query: 233 SRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNK-------KLTPQAIQVFNNRM 281
            +  ++L+  LF + GL     T++    T    L           +       +  +R 
Sbjct: 587 LQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRE 646

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
                 +  + +L++A+N D     T      + TGR S      QN+P  +    E   
Sbjct: 647 TNKLKQI--VQSLIDAVNPDDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAEGRE--- 701

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLK 400
                                 +RS  +  EG + L+ +D + +E R++A ++G+   ++
Sbjct: 702 ----------------------IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIE 739

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           AF +G D +    +  + +    +T DQR   K M   L Y               L ++
Sbjct: 740 AFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYG-----LSTYGLAQQLKIS 794

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                   +     +     +   +     E    +   G          R+    +   
Sbjct: 795 PGEADRLKSQYFATFGKVHEYLESLVAGAREKGYTETMFGR---------RRYFPGLQSP 845

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              +  A E             R  +         + + + +                  
Sbjct: 846 NRNIRDAAE-------------RGALNAPIQGSAADIMKIAMIH--------------AS 878

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           +   +   R                        ++          L V  EI    P   
Sbjct: 879 DALAKAKVRSRI---------------------ILQIHDE-----LVV--EI---APGEA 907

Query: 641 EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           E    ++   M      A  +PL         ++
Sbjct: 908 EQVTGLVRDAMEHAVDLA--VPLDVSTGIGSDWQ 939


>gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 908

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 90/640 (14%), Positives = 167/640 (26%), Gaps = 123/640 (19%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +D        +    + L   D   + HN+     V        +       T + A  
Sbjct: 377 WFDPARLDEADEKAFAQWLAAADRPKILHNAKGVMRVFAEH-GWRVEGVTM-DTALAAYL 434

Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   AL A+                 +      E              +    FGE
Sbjct: 435 VKPGRRSFALDALSLEYLGRELAPATADGQLTLGADDEAEAHALMVQARTVLDLGAAFGE 494

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                V  T  +          E     L  ++   G   D      + +       +  
Sbjct: 495 R-LEQVGATGLLA-------DVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAV 546

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQAIQ 275
           +E          +    ++L+  LF E  L     T+T       +      +   +   
Sbjct: 547 KEAHDAVG-REFNLGSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPV 605

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +       ++  V  +  L++++ +DGR+  T     A+ TGR S      QN+P  +  
Sbjct: 606 IMLRHREQAKLRVT-VEGLIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRTDE 663

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394
                                       +R   +  EG + L+ AD + IE RV+A ++ 
Sbjct: 664 GRA-------------------------IRRGFVVGEGYESLMTADYSQIELRVMAHLSQ 698

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AF +GEDL+ T  ++ F V    V  + R   K M   L Y            +
Sbjct: 699 DEGLIEAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYG-----LSAFGLS 753

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             LN++        ++  E +    ++ R   +        +  +G             +
Sbjct: 754 QQLNIDAGEARALMDTYFERFGGVRDYLRHAVDEARATGYTETMLGRRRYLP-----DLN 808

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           S   +      +        G A       D+  + M +    L     S R L      
Sbjct: 809 SDNRQRRETAERMALNAPIQGTAA------DIVKIAMLRVHRALTEARLSSRML------ 856

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                                   +        IVL        
Sbjct: 857 ----------------------------------------LQVHDE---IVL-------- 865

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           E    +      +    M          PL       + +
Sbjct: 866 EIAPGERERVEEIVRREMADAVQ--LRAPLDVSVGVGQNW 903


>gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 897

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 90/640 (14%), Positives = 167/640 (26%), Gaps = 123/640 (19%)

Query: 44  LWDCVHDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +D        +    + L   D   + HN+     V        +       T + A  
Sbjct: 366 WFDPARLDEADEKAFAQWLAAADRPKILHNAKGVMRVFAEH-GWRVEGVTM-DTALAAYL 423

Query: 103 NGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   AL A+                 +      E              +    FGE
Sbjct: 424 VKPGRRSFALDALSLEYLGRELAPATADGQLTLGADDEAEAHALMVQARTVLDLGAAFGE 483

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                V  T  +          E     L  ++   G   D      + +       +  
Sbjct: 484 R-LEQVGATGLLA-------DVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAV 535

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK----KLTPQAIQ 275
           +E          +    ++L+  LF E  L     T+T       +      +   +   
Sbjct: 536 KEAHDAVG-REFNLGSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPV 594

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +       ++  V  +  L++++ +DGR+  T     A+ TGR S      QN+P  +  
Sbjct: 595 IMLRHREQAKLRVT-VEGLIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRTDE 652

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAG 394
                                       +R   +  EG + L+ AD + IE RV+A ++ 
Sbjct: 653 GRA-------------------------IRRGFVVGEGYESLMTADYSQIELRVMAHLSQ 687

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++  ++AF +GEDL+ T  ++ F V    V  + R   K M   L Y            +
Sbjct: 688 DEGLIEAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYG-----LSAFGLS 742

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             LN++        ++  E +    ++ R   +        +  +G             +
Sbjct: 743 QQLNIDAGEARALMDTYFERFGGVRDYLRHAVDEARATGYTETMLGRRRYLP-----DLN 797

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
           S   +      +        G A       D+  + M +    L     S R L      
Sbjct: 798 SDNRQRRETAERMALNAPIQGTAA------DIVKIAMLRVHRALTEARLSSRML------ 845

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
                                                   +        IVL        
Sbjct: 846 ----------------------------------------LQVHDE---IVL-------- 854

Query: 635 ETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           E    +      +    M          PL       + +
Sbjct: 855 EIAPGERERVEEIVRREMADAVQ--LRAPLDVSVGVGQNW 892


>gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis]
 gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis]
          Length = 267

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 103/367 (28%), Gaps = 113/367 (30%)

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGR +      QN+P  +                              +R   +A  G
Sbjct: 3   AITGRLASSDPNLQNIPVRTAEGRR-------------------------IREAFVAPPG 37

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             +V AD + IE R++A ++ +   L AF   ED++  T A  F V  A V  +QR    
Sbjct: 38  SHIVSADYSQIELRIMAHLSQDAGMLSAFANNEDIHRATAAEIFGVERAAVDSEQRRYA- 96

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
                                 G++                                  A
Sbjct: 97  -------------KVINFGLIYGMS------------------------------AFGLA 113

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                  +A     + +  ++  V +  N+  +  +Q                       
Sbjct: 114 QNLNIERSAAANYIERYFARYPGVRQYMNDTRELAKQ----------------------- 150

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                 +    GR L   ++ +             R            +Q  + D++   
Sbjct: 151 ---QGYVETIFGRRLWVPEINSANV---QRRNGAERAAINAP------MQGTAADLIKLA 198

Query: 614 MMNAT------KAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAE 666
           M+         K    +++ VHDE+V E PD +       L  LM S  +    +PL AE
Sbjct: 199 MIAVDQWLTAEKLQTKLIMQVHDELVLEVPDAELALIQEHLPRLMQSVAT--LDVPLLAE 256

Query: 667 GYESKRY 673
                 +
Sbjct: 257 VGSGNNW 263


>gi|308803633|ref|XP_003079129.1| DNA polymerase I (ISS) [Ostreococcus tauri]
 gi|116057584|emb|CAL53787.1| DNA polymerase I (ISS) [Ostreococcus tauri]
          Length = 538

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 73/554 (13%), Positives = 157/554 (28%), Gaps = 139/554 (25%)

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT---------INDRGYCVDV 201
             +W       + D+ +    ++R   +   +   +              +  RG C D 
Sbjct: 86  DASWDSPTARLRADLALALRYYQRGSEIPRMQGISFARIVEAKIAVALGAMQHRGMCFDR 145

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTE 256
             A+T     +    +L      +  G+  +    +++   L+ +  L           +
Sbjct: 146 HEANTQRAAANARVEELQNRARDVIGGVEINLSSAQQVGDVLYNQLKLPPPSAHAMKGAK 205

Query: 257 T----TCQRVLSSNKKLTPQAIQVFNNRMRAS-RSAVLKLNTLVEAMNSDGRLRGTLQFL 311
           +    T   VL   K   P A  V ++R     R+     +     +N++G  R   ++ 
Sbjct: 206 SSHLSTSVDVLQQMK--HPFAQIVLDHRGALKERAMCDGYDK-ATVVNAEGHARIHTRWN 262

Query: 312 -GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             ++ TGR S      Q + R S                               R+C IA
Sbjct: 263 NTSTATGRLSSSAPNVQQVGRGSM------------------------------RNCFIA 292

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
             G+ LV AD + IE RVLA +  ++  +  F                            
Sbjct: 293 PPGRVLVAADYSQIELRVLAHLTEDERLISLFNEHSRT---------------------- 330

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              V      +  G     +  +  G                 +      +     ++  
Sbjct: 331 ---VDVFCAIWNAGRNLPIETPTEPGT---------------RDIAKRTAYGIVYGQHAT 372

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
             A +        +    A+ +   RV +  + + Q  E+                    
Sbjct: 373 GLAEKLNCSKFEAQGYIAAFHRAFPRVQQWISRVIQTAER-------------------- 412

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                +  +++  SGR      + +N     +  ++         +    ++Q  + D++
Sbjct: 413 -----DGAVIIPFSGRHRPLPKIHSNVFSERSEAQR---------QAVNTVIQGSASDLI 458

Query: 611 AEGMMN---------ATKAGYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPSWAKG 660
              M+          A     ++V  +HDE++ E      +    ++   M         
Sbjct: 459 KTAMLRWCEATKAGEARAELVELVAQIHDELLFECEKDYVQEAVRVIRSCMEGA--LCLS 516

Query: 661 LPLKAEGYESKRYR 674
           +P   +    K + 
Sbjct: 517 VPTPVKISTGKSWG 530


>gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 912

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 97/676 (14%), Positives = 179/676 (26%), Gaps = 146/676 (21%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLKAC 83
           D  ++  +   D       D     ++P+    L   L +TD   +  ++      L   
Sbjct: 351 DAALVSLS---DGSRAVAIDLT--EILPEDEAVLARFLSDTDRPKLVADAKGSWHALS-A 404

Query: 84  FNLDIPIHRWICTLVLARSNGL---PSALKAVGEA-LKLSSQKMEEGKELIARFCKGETH 139
             L +         +             ++ + +  L +    ++E          GE+ 
Sbjct: 405 RGLTLD-GVIADPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVDESGAQAN-DGPGESQ 462

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLD 189
                    +                 V   +   L+               E  +    
Sbjct: 463 SAFDLEALTSDAVPATHMA--SARRAAVLLPLQVVLDEQMAARDAVGLFTDLEMPVAATL 520

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             + D G  VD A+       +D        E      G   +    ++L+  LF E  +
Sbjct: 521 TVMEDAGIAVDDAVLAARETELDARV-THAAEGAYAAAGRELNLSSPKQLQAVLFDELKM 579

Query: 250 HLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
                T+T   T    L+        P    +  +R          +  L +A+ +DGR+
Sbjct: 580 PKTRKTKTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT--VEGLRKAIQADGRI 637

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             T Q   A+ TGR S      QN+P                                 +
Sbjct: 638 HTTFQQTIAA-TGRLSSTDPNLQNIPARHEEGMR-------------------------I 671

Query: 365 RSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           R      EG   L+ AD + IE R++A ++G+Q  ++AF +GEDL+    A    +    
Sbjct: 672 REAFTVGEGYDCLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAALVHGIEVGD 731

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT  QR+  K M   L Y               L ++        N+    +    ++  
Sbjct: 732 VTAQQRSHVKAMSYGLAYG-----LSTFGLARQLGIDNAEAADLRNAYFARFGKVHDYLE 786

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV----SELWNELHQAFEQTIENGKAII 539
            + E        +   G          R+    +     +      +A       G A  
Sbjct: 787 SVVEQARRDGYTETMFGR---------RRYLPDLTSDNRQRREMAERAALNAPIQGSAAD 837

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             K+  + +     +                                             
Sbjct: 838 IVKKAMIDVDGALTE--------------------------------------------- 852

Query: 600 NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWA 658
              Q +S  IL    +               E++ E    +      +L   M       
Sbjct: 853 ---QGLSSRIL----LQIHD-----------ELLIEVAPGEAAAVESLLKEQMGGAAE-- 892

Query: 659 KGLPLKAEGYESKRYR 674
             +PL       + +R
Sbjct: 893 LSVPLDVAVGRGQTWR 908


>gi|311261782|ref|XP_003128859.1| PREDICTED: DNA polymerase nu-like [Sus scrofa]
          Length = 1413

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 73/487 (14%), Positives = 140/487 (28%), Gaps = 119/487 (24%)

Query: 214  ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-------HLEDLT----ETTCQRV 262
               +L+QE   +            +L+  LF +  L        L  +      +T   V
Sbjct: 959  RLKELEQEAHFVAG-EQFLITSNSQLREMLFGKLKLHLLHPRATLPRMGLQRPPSTSDTV 1017

Query: 263  LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
            LS+ + L P    +   R    +     ++ L  A    G +       G + TGR S  
Sbjct: 1018 LSALQDLHPLPRIILEYRQ-VHKIKSTFVDGL-RAHMKKGSVSSVWNQTG-TVTGRLSAK 1074

Query: 323  VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
                Q + +          +   +     +  +    ++   RS  ++ EG+  + AD +
Sbjct: 1075 RPNMQGISK----------LPIQIGAPRNAKGEAGDALTVSARSLFVSPEGRSFLAADFS 1124

Query: 383  GIEARVLAWMAGEQWKLKAFETGEDL--YVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
             IE R+LA ++G+   LK F+  E    +    ++   ++P  VT+  R   K +  A+ 
Sbjct: 1125 QIELRILAHLSGDPELLKLFQEPERDDVFSALTSQWKGISPEHVTQADREQTKKVVYAVV 1184

Query: 441  YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
            Y                                                   A       
Sbjct: 1185 YG--------------------------------------------AGRERLAACLGVTL 1200

Query: 501  TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
                R  +++ QK+ ++ +          +  + G                         
Sbjct: 1201 REAARFGESFLQKYKKIKDF---TQATIARCHQTGYVESV-------------------- 1237

Query: 561  MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                GR      +      L     Q  R+          +VQ  + D+    M+    A
Sbjct: 1238 ---MGRRRPLPRIRARDQKLR---AQAERQA------VNFVVQGSAADLCKMAMIRIFAA 1285

Query: 621  -------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS-----NPSWAKGLPLKAEG 667
                      +V  +HDE++ E  D+     + L    M +            +PLK   
Sbjct: 1286 VATSPTLTARLVAQIHDELLFEVEDSQIPEFAALVRGAMEALQEVPALGLQLQVPLKVSL 1345

Query: 668  YESKRYR 674
               + + 
Sbjct: 1346 STGRSWG 1352


>gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
 gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305]
 gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105]
          Length = 1042

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 88/664 (13%), Positives = 184/664 (27%), Gaps = 146/664 (21%)

Query: 53   MPQVLKEALENTDVTIVAHNSYFERTVLK-----ACFNLDI---PIHRWICTLVLARSNG 104
            + + L + L      IV H+       L            +          T + A    
Sbjct: 479  LIEALDQLLRQESDHIVLHDFK---RWLHLTSNLRNQGQPLGGPDFLPVADTKLEAYLAQ 535

Query: 105  LPSALKAVGEA------LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR--- 155
              +  K  G        L L   + +E       F  G   +     N     E      
Sbjct: 536  PDATAKVDGLRHYAQKFLHLDVGETKEKTSEQGAFDLGLESDEETGENSAPSPEPADPRQ 595

Query: 156  ----LFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDV 201
                     C  D    R +     P+           + E  +  +   +   G  VD 
Sbjct: 596  EEREREETDCALDCAYLRALHDLFHPVLASRGQINLLKTIELPVSRVLSAMEMTGAGVDQ 655

Query: 202  ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---- 257
            +    + +    +  +  Q         + + +  ++L+  LF + GL     T++    
Sbjct: 656  SRLEQMRESFSAQAEQAQQIAWQEAGKEI-NLQSPKQLQAVLFDDMGLTPTKKTKSGGRT 714

Query: 258  TCQRVLSSN--KKLTPQAIQV----FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
            T    L     + +  +               ++   + + TL++A++       T    
Sbjct: 715  TNAAALQELYMRSIHNERANAFLGALLRHREVNKLKQI-VQTLIDAIDVRDSRIHTTFEQ 773

Query: 312  GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
              + TGR S      QN+P  +    E                         +R   +AS
Sbjct: 774  TVAATGRLSSTDPNLQNIPNRNVEGRE-------------------------IRGAFVAS 808

Query: 372  EGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            +G + L+ +D + +E R++A ++G++  ++AF +G D +    +  + +   Q++ DQR+
Sbjct: 809  DGFESLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYGIPIDQISSDQRS 868

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              K M   L Y               L ++     +        +    ++   +     
Sbjct: 869  HIKAMSYGLAYG-----LSTYGLAQQLGISPAEADILRAKYFSTFGKVHDYLESLVAQAK 923

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
            +    +   G          R+    +     +L  A E+   N                
Sbjct: 924  KRGYTETMFGR---------RRYFPDLRSSRRQLRDAAERAALN---------------- 958

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                + +   ++       Y+D+ +                                 I+
Sbjct: 959  -APIQGSAADIMKIAMKKAYQDLKDAGVKSR---------------------------II 990

Query: 611  AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYES 670
                +          L V  E+    P   E   +M+   M      A  +PL       
Sbjct: 991  ----LQIHDE-----LVV--EL---APGEQEQVTAMVKEAMEHAVKLA--VPLDVSTGVG 1034

Query: 671  KRYR 674
              ++
Sbjct: 1035 SDWQ 1038


>gi|196005441|ref|XP_002112587.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
 gi|190584628|gb|EDV24697.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens]
          Length = 1492

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 76/658 (11%), Positives = 173/658 (26%), Gaps = 119/658 (18%)

Query: 30   VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
            V+  A  +        +      +   +   +EN+    +A+N   +  +L     ++I 
Sbjct: 932  VVGIAICWGGFDSYFVNLGDCNTLQDDVANNIENSSAIKIAYNLKEQYKILTRHLQVEIK 991

Query: 90   IHRWICTLVLARSNGLPSALKA--------VGEALKLSSQKMEEGKELIARFCKGETHEC 141
               +    +        +  K         + +   L    +    +         +   
Sbjct: 992  GTSY-DPKIGIWLLDQDAHEKTFHAIISNYLADEAALLDCVIGTCTDGNGIGLHYNSQTS 1050

Query: 142  LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
               R         +L        V    +  +  +  S  E         +   G    +
Sbjct: 1051 GRRRACIESVLVHKLHSV-----VEAMLKERELYKLYSEIEMPTIRTLCWLELDGIGFCM 1105

Query: 202  ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                   + +      +++    +             +   L+ E           TC+ 
Sbjct: 1106 DECQQQIERLQYRLHYIEEMAYRIAG-RSFQLTSPTDIAHVLYTELN---------TCKD 1155

Query: 262  VLSSNKKLTPQAIQVFNNRMR-ASRSAVLK-LNTLVEAMN--SDGRLRGTLQFLGASRTG 317
            VL    ++ P    V   R   ++ +  L  L    +  +     R+  T Q   A+  G
Sbjct: 1156 VLQKLSQIHPLPALVLEWRRINSALTKTLYPLKRYSKYCHKSKTYRVYPTCQMHTAT--G 1213

Query: 318  RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
            R S      QN+P+                       D        +R+ +  +    L+
Sbjct: 1214 RISISDPNLQNIPK-----------------------DFDIAKMVRMRNIIGCTNDTILL 1250

Query: 378  VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
             AD + +E R++A ++ ++   +    G D++    +    +    V+ +QR   K M  
Sbjct: 1251 SADYSQLELRLIAHLSEDKQLSRVLNDGGDVFKAIASEWLCIPTDHVSDEQRQRAKQMCY 1310

Query: 438  ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
             + Y         MA    + +         ++    +     F      +         
Sbjct: 1311 GIIYGMTP-----MALGEQMKVPEEQAATFMHTFKSRYNGIAKFIEKTLVSCRREGYVST 1365

Query: 498  FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
             +    +R+    R  +   + L +   +    T   G A    K   + +         
Sbjct: 1366 IMNR--KRLLPNIRSTN---ARLRSHAERQAINTTVQGSAADLVKIAMINI--------- 1411

Query: 558  LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                             + R       R       +  K                     
Sbjct: 1412 -----------------HKRIDEMCANRANRDNAEWKPKF-------------------- 1434

Query: 618  TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
                   VL +HDE++ E    +  + S++    M +       + L+ +    K + 
Sbjct: 1435 -------VLQMHDELLFEIKANELESVSLIVKQEMENALK--LRVKLEVKIKTGKYWG 1483


>gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17]
 gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17]
          Length = 943

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 77/613 (12%), Positives = 162/613 (26%), Gaps = 126/613 (20%)

Query: 78  TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV----GEALKLSSQKMEEGKELIARF 133
            +L +   LD+    W  T +            ++       L+L     ++  +     
Sbjct: 437 HILAS-LGLDLA-EPWFDTKLAGYLVQPDYHADSLEQAASHFLQLQLDNADDVAQGQLDL 494

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                                       K D      + + +E        + ++   + 
Sbjct: 495 SGDVDPADQRKDLLHMAMVRALADMLAAKIDEREQFRLLQSIE------LPVSHVLFGME 548

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G  VD      +     V+     +         V + +  ++L+  LF + GL    
Sbjct: 549 QVGASVDFMRLTEMRDRFAVDARDAQETAWQFAGSRV-NLQSPKQLQAVLFDDMGLKPTK 607

Query: 254 LTET----TCQRVLSSNK-------KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            T++    T    L           +       +  +R       +  + +L++A+N D 
Sbjct: 608 KTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLKQI--VQSLIDAVNPDD 665

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
               T      + TGR S      QN+P  +    E                        
Sbjct: 666 GRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAEGRE------------------------ 701

Query: 363 CVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +RS  +  EG + L+ +D + +E R++A ++G+   ++AF +G D +    +  + +  
Sbjct: 702 -IRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGADFHKYVASLVYGIPV 760

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
             +T DQR   K M   L Y               L ++        +     +     +
Sbjct: 761 DDITPDQRTHVKAMSYGLAYG-----LSTYGLAQQLKISPGEADRLKSQYFATFGKVHEY 815

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
              +  +  E    +   G          R+    +      +  A E            
Sbjct: 816 LESLVADAREKGYTETMFGR---------RRYFPGLQSPNRNIRDAAE------------ 854

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            R  +         + + + +                  +   +   R            
Sbjct: 855 -RGALNAPIQGSAADIMKIAMIH--------------ASDALAKAKVRSRI--------- 890

Query: 602 VQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL 661
                       ++          L V  EI    P   E    ++   M      A  +
Sbjct: 891 ------------ILQIHDE-----LVV--EI---APGEAEQVTGLVRDAMEHAVDLA--V 926

Query: 662 PLKAEGYESKRYR 674
           PL         ++
Sbjct: 927 PLDVSTGIGSDWQ 939


>gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2]
 gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2]
          Length = 608

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 105/696 (15%), Positives = 192/696 (27%), Gaps = 171/696 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET          +  Y  D  + L  FG +     +       V       AL
Sbjct: 36  RILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTAL 86

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111
           +      V HN+ F+  V++    + +     +   T + +                L+ 
Sbjct: 87  Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +   +     EE K  +AR  K        D+           +  Y   D  +   +
Sbjct: 146 LTKFY-IDPATAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202

Query: 172 FKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             ++ PL           E +L  +   +   G+ +DV  +  L+  +  +         
Sbjct: 203 LGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKAEHYTAVAR 262

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279
                 V S    EKL   L   TG+ ++  T T  ++V    L +  +      +    
Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIE 319

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +        +   +E  ++D R+   +  L A RT R S      QNLP         
Sbjct: 320 AKKWGSWEKTWVRNFIERRDADDRVHPGINPLQA-RTARMSTTSPSAQNLPAND------ 372

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   VR C +A  G+ +V  D    E RVLA +A +    
Sbjct: 373 ----------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAALAND---- 406

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                                                            + M        
Sbjct: 407 -------------------------------------------------RTMIRAFEEEA 417

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           +             +     NF         + A          ++V   +   +  V++
Sbjct: 418 DLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPGVTD 477

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           L   L +                             N   ++ P+GR L           
Sbjct: 478 LSKSLQREA--------------------------ANLGYVITPTGRRLPVDPDR----- 506

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV--LTVHDEIVCETP 637
                         G      +VQ+ SRD+ A  ++   +AG   +  L +HDE++   P
Sbjct: 507 --------------GYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLASVP 552

Query: 638 DTDEF-NASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
           + +    A  +  +M       +G+ +  +     R
Sbjct: 553 EAEAEVTAKEIGRIMEQTF---RGVLINTDPEVGGR 585


>gi|327282241|ref|XP_003225852.1| PREDICTED: DNA polymerase theta-like [Anolis carolinensis]
          Length = 2435

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/742 (13%), Positives = 198/742 (26%), Gaps = 150/742 (20%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHD--PVM--------------------PQVLKEALE 62
             ED+ V+  A  +                 +                     + L+  L+
Sbjct: 1745 CEDILVVGLAVCWGGKDAFYISLQQKLKEQIEMSASLAPPSLDQNLTVAERLEHLQSCLQ 1804

Query: 63   NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LKAVGE 114
            ++        + +E       L     + +    +    V        S        V  
Sbjct: 1805 DSKRDFSL--AMYEFIQHYKTLLKACGISLA-GSFEDPKVACWLLDPGSNERSLHNMVAS 1861

Query: 115  AL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
             L        K+  G+   +             R        + L  +          + 
Sbjct: 1862 FLPEELFLLDKIGTGQGNQSIGLNASADHSGRYRAAVESVLVFHLMDKLSAL-----LQK 1916

Query: 172  FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                +     E    Y    +   G     A   T   +++ + ++ + ++  L      
Sbjct: 1917 DNLQDIFHKMEMPNQYCLALLELNGIGFSTAECETQKHVMEAKLSETENQIYQLAGHS-F 1975

Query: 232  SSRCLEKLKTWLFLETGLHLE---------------------------DLTETTCQRVLS 264
            S  C + +   LFLE  L  +                               +T + VL 
Sbjct: 1976 SLTCPDDIAEVLFLELKLPSDGESKMQRGKKTLGYTGRAVVNGNRVRLSKQFSTTKGVLE 2035

Query: 265  SNKKLTPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGR 318
              K L P    +   R   +  A+ K+        L+  +    R+    Q   A+  GR
Sbjct: 2036 KLKALHPLPGLILEWRKITN--AITKVIFPLQREKLLNPILGMERIYPVSQTNTAT--GR 2091

Query: 319  WSGCVFPPQNLPR-------------------------PSRSHEELDQIITHLPTSITSD 353
             S      QN+P+                         P   + +   +           
Sbjct: 2092 ISFREPNIQNVPKDFEIEMPILVEESPPTQRQHKMFNAPRNRNRKSSVLPCEPKNLTERL 2151

Query: 354  PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                   +  +R   +   G  ++ AD + +E R+LA +  ++  L+A   G D++ +  
Sbjct: 2152 TSKKIPFAVSMRHAFVPFPGGLILAADYSQLELRILAHLCCDRRLLQALNDGADVFRSIA 2211

Query: 414  ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            A    +AP  V  D R   K +   + Y  GAK+  +      + ++        +S   
Sbjct: 2212 AEWKMMAPEAVGNDLRQQAKQICYGMIYGIGAKSLGE-----QMGVDEKDASYYIDSFKS 2266

Query: 474  EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
             +   + F R   +   +       +G    R     R+ +        +  +    T+ 
Sbjct: 2267 RYPGIQKFLRETVKKCNQDGFVQTIMGR--RRYLPTIRESNPYKKA---QAERQAVNTVV 2321

Query: 534  NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             G A    K   V +    +        LPS          + ++  +    +  R+  Y
Sbjct: 2322 QGSAADIVKTATVNIQKQLE-------ALPSAVKSFEHLCSSTQNKWSGMAEK--RQIMY 2372

Query: 594  GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMT 652
                                     K G   +L +HDE++ E  +      + +    M 
Sbjct: 2373 P------------------------KHGGFFILQLHDELLYEVAEDSMIQVAQIVKHEME 2408

Query: 653  SNPSWAKGLPLKAEGYESKRYR 674
                    + L  +      + 
Sbjct: 2409 HAVK--LSVKLSVKVKVGSSWG 2428


>gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 913

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/687 (13%), Positives = 177/687 (25%), Gaps = 156/687 (22%)

Query: 21  ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVAHNSYFER 77
           +     D  ++  +   D       D     ++P+    L E L + +   +  ++    
Sbjct: 346 LKPVEGDAALVSLS---DGVRAVAIDLT--KILPEDEAALAELLADVERPKLVADAKGSW 400

Query: 78  TVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEA-LKLSSQKMEEGKELIARF 133
             L     L +         +             +  + +  L +    + EG       
Sbjct: 401 HAL-RARGLTMD-GVVADPSLAGYLCRPEQRSYDVDTLTQRWLGIDLAVVGEG------- 451

Query: 134 CKGETHECLYDRNKPNHREAWR-----LFGEYCKGDVTVTREIFKRLEPLS--------- 179
            + +              +A                  V   +   L+            
Sbjct: 452 -QNQADAGSSQSQSAFDLDALASDAVPAAHLASARRAAVLLPLQVVLDEQMADRDALGLF 510

Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E  +      + D G  VD A+       +D        E      G   +    ++
Sbjct: 511 ADLEMPVAATLTVMEDVGIAVDDAVLAVRETELDARV-THAAEGAYAAAGRELNLSSPKQ 569

Query: 239 LKTWLFLETGLHLEDLTET---TCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNT 293
           L+  LF E  +     T+T   T    L+        P    +  +R          +  
Sbjct: 570 LQAVLFDELKMPKTRKTKTGYTTDAEALAGLYAKTSHPFLENLLEHRDAIKLRQT--VEG 627

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L +A+ SDGR+  T Q   A+ TGR S      QN+P  +                    
Sbjct: 628 LRKAIQSDGRIHTTFQQTIAA-TGRLSSTDPNLQNIPARNEEGMR--------------- 671

Query: 354 PDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     +R      EG + L+ AD + IE R++A ++G+Q  ++AF +GEDL+   
Sbjct: 672 ----------IRQAFTVGEGYECLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYV 721

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            A    +    VT  QR+  K M   L Y               L +         N+  
Sbjct: 722 AALVHGIDVDDVTAQQRSHVKAMSYGLAYG-----LSTFGLARQLGIGNAEAADLRNAYF 776

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV----SELWNELHQAF 528
             +    ++   + E            G          R+    +     +      +A 
Sbjct: 777 ARFGRVHDYLESVVEQARRDGYTQTMFGR---------RRYLPDLTSDNRQRREMAERAA 827

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                 G A    K+  + +     +                                  
Sbjct: 828 LNAPIQGSAADIVKKAMIDVDRALSE---------------------------------- 853

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-ML 647
                         Q +S       ++                ++ E    +      +L
Sbjct: 854 --------------QGLSS----RVLLQIHDE-----------LLVEVASAEVEAVETLL 884

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYR 674
              M         +PL       + +R
Sbjct: 885 KEQMGGAAE--LSVPLDVAVGRGRTWR 909


>gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 317

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/421 (15%), Positives = 117/421 (27%), Gaps = 119/421 (28%)

Query: 264 SSNK--KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
                    P    +  +R R     +  +  L E +  DGR+  T     A+ TGR S 
Sbjct: 2   EELARYNPHPFLEALLYHRDRIKLLQI--VRNLRERVADDGRIHTTFGQTVAA-TGRLSS 58

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-LVVAD 380
                QN+P  +                              +R   +  +    L+ AD
Sbjct: 59  IDPNLQNIPARTVDG-------------------------QKIREAFVPQKPYAALMTAD 93

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + IE R++A ++G++  L AF +GEDL+ +  A  + V P +VT  QR+  K     L 
Sbjct: 94  YSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGLA 153

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           Y               L                                           
Sbjct: 154 YG-----LSAYGLAAQL---------------------------------------NISQ 169

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              +++   + ++  +V E  N++                                    
Sbjct: 170 RDAKQLMDTYFERFGKVREYLNQIVATA--------------------------TRVGYT 203

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-- 618
               GR     ++ +             R            +Q  + D++   M+     
Sbjct: 204 ETMRGRRRYLPELRSTN---RNVADNARRAALNAP------IQGSAADLMKAAMLQVDAD 254

Query: 619 ----KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
               +    ++L VHDE+V E    +      L    MT        +PL+        +
Sbjct: 255 LRQEQLQSRVLLQVHDELVLEVAPGETERLETLVRQAMTGVAK--LRVPLEVSVGIGPNW 312

Query: 674 R 674
           R
Sbjct: 313 R 313


>gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik]
 gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik]
          Length = 600

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 113/682 (16%), Positives = 207/682 (30%), Gaps = 173/682 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVLKEALE 62
           L +D ET         G+  Y+      L  FG  D    +      P  + Q  +EAL 
Sbjct: 38  LAVDTETT--------GLDIYSSTFRCRLVQFGTQD-EAWVLPVDESPTQLQQETREAL- 87

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKAV 112
           +    IV  N+ ++  VL  CF + +     + + T +LA+              +L+ +
Sbjct: 88  DKLGKIVMQNASYDLQVLDHCFGIKMEDLWPKVLDTQILAKLVDPRPYGAGGFGHSLEEL 147

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                +S  + ++ K L+A+  K         +           +  Y   D   T  I 
Sbjct: 148 IAEF-ISKDQAKDVKGLMAKLAKEHKTT--KAKIWSTIDLFHPEYLTYAGMDTIFTARIC 204

Query: 173 KR--------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           ++           L   E ++  +   I+ +G+ +DV  A  L+     E++  +  L +
Sbjct: 205 RKLTRLVPDVSRGLVPYEHKISEICSYIDRKGFQLDVEYAQELSDRWLYEKSVWEAILFT 264

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL-----TPQ---AIQV 276
                + +    E+    +  E G  ++  T+T  ++V +          TP+      +
Sbjct: 265 EYG--LDNPNSNEQ-CADVIEEAGWKIKGRTDTGKRQVNADLYDEMIKKGTPEQAALAAM 321

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                +  +     +   +E  +SD R    +  L A RT R S    P Q LP      
Sbjct: 322 IQEAQKLGKWRNTWVQKFLEVKDSDDRCHTFVNPLQA-RTSRMSITGIPAQTLPAGD--- 377

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                      VR C +A  G  +   D    E RVLA ++G+ 
Sbjct: 378 -------------------------WTVRRCFLAEPGHVMSSIDYQTQELRVLAALSGD- 411

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
                                                               + M     
Sbjct: 412 ----------------------------------------------------KTMIEAFK 419

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
              +           P +     NF           A +        +RV +A+ + +  
Sbjct: 420 TGADLHQMTADAAQVPRKIGKMANFLTVYGGGAKTLAEQANIDFPTAKRVLEAFAKTYPG 479

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V+    +L     +    G                        ++   GR L    V ++
Sbjct: 480 VARYSKKL---AAEAGRQGY-----------------------IVNGMGRRLP---VDSS 510

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD--IVLTVHDEIVC 634
           R+Y                     ++Q+ SRD+    ++   +AG+   + L +HDEIV 
Sbjct: 511 RTY----------------SALNYMIQSSSRDVTCRALIRLHEAGFTPYLRLPIHDEIVA 554

Query: 635 ETP-DTDEFNASMLYHLMTSNP 655
             P +  E+ A  +  LM    
Sbjct: 555 SLPAEKAEWGAKKIGQLMAEEM 576


>gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase
           domains [Streptococcus pyogenes M49 591]
          Length = 418

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/494 (14%), Positives = 141/494 (28%), Gaps = 111/494 (22%)

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE- 246
           +   +   G  V+ A    + +   V    L QE+  +      +    ++L + LF + 
Sbjct: 24  VLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQ-EFNINSPKQLGSILFEKM 82

Query: 247 -TGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
              L +   T+   +T   VL     + P   ++ + R   ++     +  L + + +DG
Sbjct: 83  QLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQ-ITKLQSTYVIGLQDYILADG 141

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           ++         ++TGR S      QN+P                                
Sbjct: 142 KIHTRYVQD-LTQTGRLSSVDPNLQNIPIRLEQGR------------------------- 175

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
            +R     S E   L+ +D + IE RVLA ++G++  + AF  G D++ +T  R F +  
Sbjct: 176 LIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDK 235

Query: 422 A-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           A  VT + R   K +   + Y            +  L +         ++  E +   + 
Sbjct: 236 AADVTANDRRNAKAVNFGIVYGIS-----DFGLSNNLGITRKQAKSYIDTYFERYPGIKA 290

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           +   +     +    +       E      R  +  V        +    +   G A   
Sbjct: 291 YMENVVREAKDKGYVETLFKRRRELPDINSR--NFNVRSF---AERTAINSPIQGSAADI 345

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            K   + L    +        L                                      
Sbjct: 346 LKISMINLDKALQAGGFRAKCL-------------------------------------- 367

Query: 601 IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAK 659
                         +        IVL V        P+ +      L    M +    A 
Sbjct: 368 --------------LQVHDE---IVLEV--------PNDELTAIKKLVKDTMEAAVDLA- 401

Query: 660 GLPLKAEGYESKRY 673
            +PL  +    + +
Sbjct: 402 -VPLCVDESTGQSW 414


>gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM
           16992]
          Length = 950

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 90/610 (14%), Positives = 176/610 (28%), Gaps = 130/610 (21%)

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAV--GEALKLSSQKMEEGKELIA---RFCKGETH 139
            + +P      T +             +    A  L     E+ +        F + E  
Sbjct: 447 GVKLP-EPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHVEEQSESATQGTLDFDEPEES 505

Query: 140 ECLYDRNKPNHREAWRLFGE--YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               D   P H     L         D      +      L S E  +  +   +   G 
Sbjct: 506 VQQKDDQLPRHTAIVGLLARNLSNSLDQREQFAL------LESVEIPVSRVLYGMEHAGA 559

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            VD+     + + +  +     QE      G   + +  ++L+  LF + GL     T+T
Sbjct: 560 QVDMNRLMNMREQLASD-ANHAQETAWQYAGKRVNLQSPKQLQKILFEDMGLKPTKKTKT 618

Query: 258 ----TCQRVLSSNKKLTPQ-------AIQVFNNRMRASRSAVLKLNTLVEAMN-SDGRLR 305
               T    L + +  +            +  +R +     +  + TL++A N SDGR+ 
Sbjct: 619 GSYTTNAAALQTLRDRSYDNDSACQFLDALLLHREKNKLKQI--VQTLIDATNGSDGRIH 676

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T +   A+ TGR S      QN+P    +  E                         +R
Sbjct: 677 TTFEQTVAA-TGRLSSVDPNLQNIPNRDPAGRE-------------------------IR 710

Query: 366 SCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           S  +  EG + L+ +D + +E R++A ++G++  ++AF +G D +    +  + V   ++
Sbjct: 711 SAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEI 770

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           T DQR+  K M   L Y            +  L +               +     +   
Sbjct: 771 TSDQRSHVKAMSYGLAYG-----LSTYGLSQQLGIKPGEAESLKQQYFATFGKVHEYLES 825

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
           +     E    +   G          R+    +      +  A E+   N          
Sbjct: 826 LVSTAREKGYTETIYGR---------RRYFPGLKSPNRAVRDAAERAALN---------- 866

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                     + +   ++          +  +                            
Sbjct: 867 -------APIQGSAADIMKIAMIRADDALHES---------------------------G 892

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLK 664
           ++  I+    +          L V  EI    P   E   +++   M      A  +PL 
Sbjct: 893 LASRII----LQIHDE-----LVV--EI---APGEAEQATALVKDAMEHAVDMA--VPLD 936

Query: 665 AEGYESKRYR 674
                   ++
Sbjct: 937 VSTGIGSDWQ 946


>gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279]
 gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279]
          Length = 1273

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 140/415 (33%), Gaps = 72/415 (17%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           +  A  +    V            Q LK+  E   +      +  + +VL     + +P 
Sbjct: 332 LGLA-AYAGGKVY-----RGQPSLQELKKFPEIRSMV-----AK-DLSVLALKEGVWVPP 379

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                 ++LA      ++                +    + R+  G+      +R +  H
Sbjct: 380 G--DDPMLLAYLYDPSNS----------------DPASTVRRYGAGDWGSDPGERAQAAH 421

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              W         +  +   +++++E   S       +   I  RG  ++      L++ 
Sbjct: 422 -TLWETLQSRIGENPKIEW-LYQQIEKPLSA------VLARIEARGISLNAEYLLQLSEE 473

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-----DLTETTCQRVLSS 265
           +  E + L+ E+  L      +    ++L+  L+ E  L            +T    L  
Sbjct: 474 LAKEISYLEAEIHRLAG-RSFNVNSRDQLEVVLYDELKLSAPGRKTQTGKRSTAASALEE 532

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVF 324
                P   ++   R   ++     L+ L + ++   GRL       G + TGR S    
Sbjct: 533 LLGQHPIIERILTYR-ELTKLKSTYLDPLPKLIHPKTGRLHTRFNQTG-TATGRLSSVDP 590

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QN+P  +                              +R    A+ G +LVVAD + I
Sbjct: 591 NLQNIPVRTEIGRR-------------------------IRKAFRAAPGMRLVVADYSQI 625

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           E RVLA ++G++  +  F  G D++  T A  F + P +V  +QR   K +    
Sbjct: 626 ELRVLAHLSGDENLINVFREGRDIHTQTAAWMFGLEPDKVGAEQRRAAKCLVEGT 680



 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 61/227 (26%), Gaps = 45/227 (19%)

Query: 452  ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
            A    L++      +             NF      +    + E        E   + + 
Sbjct: 1083 ARVYDLSVEGKPAYLAEGFVSHN---TINFGVLYGMSAHRLSNELSISYAEAEGFIERYF 1139

Query: 512  QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
              + +V E    +     QT                            +    GR     
Sbjct: 1140 ASYPKVREWIERVLADARQT--------------------------GYVETMFGRRRFVA 1173

Query: 572  DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLT 627
            D+G+    + +      R            VQ  + D++   M+            +VL 
Sbjct: 1174 DLGSR---VRSVREAAERMAFNMP------VQGTAADLMKLAMVKLQPELEPLEAHLVLQ 1224

Query: 628  VHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            VHDE++ E P       + +   +M     WA  +PL+      + +
Sbjct: 1225 VHDELLVEAPADKAEAVAGVVREVMQQA--WALAVPLEVGTGIGENW 1269



 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 4/71 (5%), Positives = 15/71 (21%), Gaps = 5/71 (7%)

Query: 433  KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
              +   + Y   A           L+++              +     +   +  +  + 
Sbjct: 1105 NTINFGVLYGMSAHRLSNE-----LSISYAEAEGFIERYFASYPKVREWIERVLADARQT 1159

Query: 493  AIEDLFIGTAC 503
               +   G   
Sbjct: 1160 GYVETMFGRRR 1170


>gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 894

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 92/666 (13%), Positives = 182/666 (27%), Gaps = 134/666 (20%)

Query: 19  CGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT 78
            G+    +D   + F                        +  L +     +  ++  +  
Sbjct: 347 LGLTVETQDGRPVGFGLA-SATEAVTLPWQEGRADYAPFERWLASDA-PKIMSDAKLQVK 404

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCK 135
            ++    L++        LV             L A+     +      +  +L+     
Sbjct: 405 AMRRA-GLEVQGLA-FDVLVAGWLLRPGFTDKTLAALVSRYLMEDLPEPDANQLVPETEA 462

Query: 136 GETHECLYDRNKPNHREAWRLFG-EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                           EAW     E+   +V   R +      +   E     +   +  
Sbjct: 463 LTAPV-----------EAWYTLRVEHALREVLDERTLGV----MVDIEMPTLLVLVEMEL 507

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
           RG   D A    L+  +    T L Q   +     + +    ++L+  LF + G+     
Sbjct: 508 RGVATDRAGLAELSAQLQERITDLAQRAFAEIGKEI-NLGSPKQLQEVLFDQLGMPKTRA 566

Query: 255 TE---TTCQRVLSSN--KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            +   +T    L+        P    +  +R  +    +  + TL   +  D R+  T  
Sbjct: 567 NKTGFSTDAGALADLQASNPHPFLDLLLEHRDASKLRQI--IQTLERGIGDDERIHTT-Y 623

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               + TGR S      QN+P  +                              +RS + 
Sbjct: 624 VQTGTTTGRISSNDPNLQNIPVRTEEGRR-------------------------IRSAIR 658

Query: 370 ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
             EG   L+ AD + IE R++A ++G+   ++AF  GEDL+    +R F V PA V+ + 
Sbjct: 659 VGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFAAGEDLHRFVGSRIFGVEPADVSAEM 718

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K M   L Y            +  L + +             +    ++ R + E 
Sbjct: 719 RTKVKAMSYGLAYG-----LSAFGLSKQLRIPSSEAKQLMTDYFARFGAVRDYLRQVVEE 773

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                  +   G         +   +S    L +   +A       G A    K   + +
Sbjct: 774 ARAAGYTETIFGRRRP-----FPDLNSPNRVLRDNAERAALNAPIQGSAADIMKIAMIRI 828

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
               ++                                                    RD
Sbjct: 829 EADMRE----------------------------------------------------RD 836

Query: 609 ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEG 667
           + +  ++              DE++ E    +      +    M         +PL+ + 
Sbjct: 837 MASRMLLQVH-----------DELILEVAAGEWDALEAIVTDRMAHAAD--LRVPLEVQV 883

Query: 668 YESKRY 673
                +
Sbjct: 884 GRGDSW 889


>gi|300122531|emb|CBK23101.2| unnamed protein product [Blastocystis hominis]
          Length = 437

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 78/481 (16%), Positives = 146/481 (30%), Gaps = 117/481 (24%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            L   ++  G  VD A       ++D     L+Q+ E+L    +      +++   L+ E
Sbjct: 19  PLLAHMDATGVNVDSAALQRNKMVIDPLLKDLEQKAEALVGHPILMWSS-KQVCEVLYDE 77

Query: 247 TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE------AMNS 300
             L        + + VL +     P    V   R   S+     ++ L +        ++
Sbjct: 78  LKLEAPKGNRVSTESVLQTMADKHPFPGLVIEYRR-LSKQMSTYIDGLEKEFVSVPFRST 136

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           + +L  +     A+ TGR S      Q LP+ S                       L  +
Sbjct: 137 ETKLIYSTWNQMATGTGRLSTAAPNMQTLPKRSLE--------------------RLSNL 176

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--TGEDLYVTTYARSFN 418
              +R   +A   ++L+  D   IE RV A  + +   +  F      D+Y    +    
Sbjct: 177 DVDIRGAFVALPNRRLISVDYRQIEMRVFAHCSHDIALINLFSSGQNSDIYTMIASMIHK 236

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V    VT+  R   KV+ L L Y              G+ + + A  +K           
Sbjct: 237 VEVKDVTQKFRDEAKVITLGLCY--------------GMGVESMASKLKI---------- 272

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                                     ++K +   +   V +       +  +T       
Sbjct: 273 --------------------PILTATQLKNSILNRFKGVLQFMKNTISSARKTH------ 306

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                +   SGR   +                         +  
Sbjct: 307 --------------------FVETLSGRRRYF----------KAKDSGGEGLAHIDRQAV 336

Query: 599 ENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTD---EFNASMLYHLM 651
            +++Q  + D+L   M+   K       +I+L +HDE+V + PD+D   E   ++L  +M
Sbjct: 337 NSVIQGSAADLLKCAMILLWKPLSELDSEIILQIHDELVIDCPDSDEVCEKVIALLNQVM 396

Query: 652 T 652
            
Sbjct: 397 C 397


>gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
          Length = 352

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 66/434 (15%), Positives = 118/434 (27%), Gaps = 109/434 (25%)

Query: 239 LKTWLFLETGLHLEDLTE-----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
           +   L+    L     T+     +T  R L            V ++R   S+     ++ 
Sbjct: 8   MGEVLYERLKLPHARKTKGKTGYSTDYRELERLAAYHDLPAAVISHRN-LSKLKSTYVDK 66

Query: 294 LVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           L   ++  DGR+  T      + TGR S      QN+P  +     L             
Sbjct: 67  LATLIDPADGRVHTTFNQ-TVTATGRLSSSNPNLQNIPIRTPEGRRL------------- 112

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                       R+  +A+     + AD + I+ RVLA  +G+    +AF   +D++  T
Sbjct: 113 ------------RAAFVAAAEHLFLAADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHART 160

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            A  F V    V+ D R + K +   + Y   A           L  +        +   
Sbjct: 161 AAEIFRVNQGLVSADMRRVAKTINFGIVYGMSA-----FGLAEQLRCSRKEAQTFIDRYF 215

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
           E ++    F + + E                                             
Sbjct: 216 ELYQGVHRFMQEIVEQARRDGWVGTL---------------------------------- 241

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                   ++RR +P +                R         N     T    +     
Sbjct: 242 -------LQRRRPLPEINSGNKM----------RREFAERTAINTPIQGTAADIIKLAAI 284

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLM 651
              +           D  +E ++             HDE++ E P  +      ++   M
Sbjct: 285 ACDRALRE------ADCRSEALLQI-----------HDELIFEVPQDELAQVGPLIRQAM 327

Query: 652 TSNPSWAKGLPLKA 665
                 A  +PL  
Sbjct: 328 EEVMELA--VPLTV 339


>gi|328724320|ref|XP_003248104.1| PREDICTED: DNA polymerase theta-like isoform 2 [Acyrthosiphon pisum]
          Length = 1583

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 86/651 (13%), Positives = 185/651 (28%), Gaps = 166/651 (25%)

Query: 30   VILFAFGFDDHPV-ELWDCVH-DPVMPQVLKEALENTDVTIVAHN---SYFERTVLKACF 84
            +  FA  +    V    D     P    +LK+ L N ++ +   N   +     ++  C 
Sbjct: 1072 LKGFAITWYKQSVVHYVDFNKTGPSGVSLLKKLLSNKNLIV---NITDAKLNYKIISQCC 1128

Query: 85   NLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
            N+  P+ ++    V          ++L  + +       K++    +   F         
Sbjct: 1129 NIK-PVCKFRDPFVADWLINGQPKNSLNNLVQWNLNFQGKIQTNDAVFNAFIT------- 1180

Query: 143  YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
              +     R   +    Y               +     E  +  +   +   G+ ++  
Sbjct: 1181 -LKLMSTLRHQLKQIYIY---------------KTFKDIEMPIQIILAKMELYGFGLNKK 1224

Query: 203  LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
                LN  V+     + ++    +    +    LE             ++   + T    
Sbjct: 1225 HLVELNDTVNKLMANISEQGFEQSGIRFNMQSTLE----------WAKVKKKLKLTDSS- 1273

Query: 263  LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
                   +   +++  N  + S      +N  +   N     R        S TGR S  
Sbjct: 1274 -------SHLLVELVKNWRKLSCLRNTHINMYLTIQND----RVHCDSNTYSNTGRISMH 1322

Query: 323  VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
                QN+P+      E+                        +RS  +    + LV  D  
Sbjct: 1323 EPNLQNIPKDYVIENEIL----------------------SLRSAFVPKSDQTLVSVDFC 1360

Query: 383  GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
             IE RVLA ++ +   L A  +  D+++   ++  N+   +V  + R   K +   + Y 
Sbjct: 1361 QIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNIPEIEVCDELRQKTKQVCYGMLYG 1420

Query: 443  GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             G     +                                                    
Sbjct: 1421 MGTVTLSE--------------------------------------------TLNITQDE 1436

Query: 503  CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
              ++   +++    V++ +NE                                   ++  
Sbjct: 1437 AHKLISEFKRTFPGVNKYFNECVLQCRS--------------------------MGLVKT 1470

Query: 563  PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             SGR   + D+ +    + +   Q+ R+          I+Q  + D+    M+   K   
Sbjct: 1471 LSGRIRHFPDINSEVPKIKS---QVERQAI------NTIIQGSAADVTKMAMIKVDKIIN 1521

Query: 621  ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLK 664
                     +V+ +HDE++ +  +T    A S +   M +  +    LP+K
Sbjct: 1522 QGVLNTRVHLVMHLHDELIFDVENTVLDEACSTIIKTMEAAVNLCVPLPVK 1572


>gi|328724318|ref|XP_003248103.1| PREDICTED: DNA polymerase theta-like isoform 1 [Acyrthosiphon pisum]
          Length = 1691

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 86/651 (13%), Positives = 185/651 (28%), Gaps = 166/651 (25%)

Query: 30   VILFAFGFDDHPV-ELWDCVH-DPVMPQVLKEALENTDVTIVAHN---SYFERTVLKACF 84
            +  FA  +    V    D     P    +LK+ L N ++ +   N   +     ++  C 
Sbjct: 1180 LKGFAITWYKQSVVHYVDFNKTGPSGVSLLKKLLSNKNLIV---NITDAKLNYKIISQCC 1236

Query: 85   NLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
            N+  P+ ++    V          ++L  + +       K++    +   F         
Sbjct: 1237 NIK-PVCKFRDPFVADWLINGQPKNSLNNLVQWNLNFQGKIQTNDAVFNAFIT------- 1288

Query: 143  YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
              +     R   +    Y               +     E  +  +   +   G+ ++  
Sbjct: 1289 -LKLMSTLRHQLKQIYIY---------------KTFKDIEMPIQIILAKMELYGFGLNKK 1332

Query: 203  LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
                LN  V+     + ++    +    +    LE             ++   + T    
Sbjct: 1333 HLVELNDTVNKLMANISEQGFEQSGIRFNMQSTLE----------WAKVKKKLKLTDSS- 1381

Query: 263  LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
                   +   +++  N  + S      +N  +   N     R        S TGR S  
Sbjct: 1382 -------SHLLVELVKNWRKLSCLRNTHINMYLTIQND----RVHCDSNTYSNTGRISMH 1430

Query: 323  VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
                QN+P+      E+                        +RS  +    + LV  D  
Sbjct: 1431 EPNLQNIPKDYVIENEIL----------------------SLRSAFVPKSDQTLVSVDFC 1468

Query: 383  GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
             IE RVLA ++ +   L A  +  D+++   ++  N+   +V  + R   K +   + Y 
Sbjct: 1469 QIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNIPEIEVCDELRQKTKQVCYGMLYG 1528

Query: 443  GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             G     +                                                    
Sbjct: 1529 MGTVTLSE--------------------------------------------TLNITQDE 1544

Query: 503  CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
              ++   +++    V++ +NE                                   ++  
Sbjct: 1545 AHKLISEFKRTFPGVNKYFNECVLQCRS--------------------------MGLVKT 1578

Query: 563  PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-- 620
             SGR   + D+ +    + +   Q+ R+          I+Q  + D+    M+   K   
Sbjct: 1579 LSGRIRHFPDINSEVPKIKS---QVERQAI------NTIIQGSAADVTKMAMIKVDKIIN 1629

Query: 621  ------GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLK 664
                     +V+ +HDE++ +  +T    A S +   M +  +    LP+K
Sbjct: 1630 QGVLNTRVHLVMHLHDELIFDVENTVLDEACSTIIKTMEAAVNLCVPLPVK 1680


>gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012]
 gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012]
 gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74]
          Length = 449

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 97/266 (36%), Positives = 146/266 (54%), Gaps = 6/266 (2%)

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQK--MEEGKELIARFCKGETHECLYDR- 145
           P+ RW  T+V A ++GLP +L  + E L +   K   +EGK LI  FCK         R 
Sbjct: 7   PVERWRDTMVQALAHGLPGSLGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA 66

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVAL 203
               H E WR F  Y   D+   RE++ RL   + +  EL  W+ DQ INDRG C+D+ L
Sbjct: 67  TSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWNYQGTELALWHRDQQINDRGVCMDMQL 126

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
           A    + VD E+ +L +  + +T G V ++   + L   +    G+ L D+  +T +R +
Sbjct: 127 ARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRI 186

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
           ++   L     ++   R++AS ++  K   L++ ++ DGRLRGTLQF GASRTGRW+G +
Sbjct: 187 AN-PDLPSAVKELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRL 245

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTS 349
           F PQNLPRPS   E++D+ I     +
Sbjct: 246 FQPQNLPRPSLKQEQIDEGIEAPNAA 271


>gi|224003183|ref|XP_002291263.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
 gi|220973039|gb|EED91370.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
          Length = 500

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 63/483 (13%), Positives = 132/483 (27%), Gaps = 140/483 (28%)

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
            +  +   +  RG               +     L+ +  ++T          +++  +L
Sbjct: 78  PVQSILAAMECRGVAFYPNHLKRNEAQANERIEALEAQARTITNDSSFLLSSPQQISNYL 137

Query: 244 FLETGLHLED----LTET---TCQRVLSSNK-----KLTPQAIQVFNNRMRASRSAVLKL 291
           +    + +       T++   T +  L + K        P    +   R   ++     +
Sbjct: 138 YDILKMKVPSGLVQKTKSQRSTSEETLQALKAASNGSPHPIIDVILEFR-TLNKLLTTYI 196

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L        R+        A RTGR S      Q +P+                    
Sbjct: 197 KPLPTFCLP-QRIHPQWSEC-AVRTGRLSCRQPNLQQVPKDD------------------ 236

Query: 352 SDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFET--GED 407
                       VR   + S+ +   L   D +  E R+LA M+G++  +  F+     D
Sbjct: 237 ---------GASVRRSFVPSKKETMCLFACDYSQKEVRILAHMSGDKALISLFQMDANVD 287

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           +Y    +   N     +T  +RA  K + LAL Y                          
Sbjct: 288 IYKQMSSLIRNKPVESITAQERAQFKQVTLALLYGMSPN--------------------- 326

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                  + A +     +   ++   + ++   V     +  + 
Sbjct: 327 -----------------------QVAKKLNITKSQAIQMMNDFFRRFQGVKNWMEDTKEF 363

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +                          N  ++  +GR      + ++    N    Q 
Sbjct: 364 ARR--------------------------NHYVVTIAGRRRYLDGIDSDD---NGAKAQA 394

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA---------------GYDIVLTVHDEI 632
            R+          ++Q  + D++   M+N  +                   I+L +HDE+
Sbjct: 395 ERQAI------NTVIQGSAADLMKCSMINIAENLQRWQEDNSSNGTSSRPRILLQIHDEL 448

Query: 633 VCE 635
           V E
Sbjct: 449 VLE 451


>gi|315452575|ref|YP_004072845.1| DNA polymerase I [Helicobacter felis ATCC 49179]
 gi|315131627|emb|CBY82255.1| DNA polymerase I [Helicobacter felis ATCC 49179]
          Length = 861

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 76/619 (12%), Positives = 163/619 (26%), Gaps = 159/619 (25%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGE 137
            K  + LD+P H +    +LA  +       + A+G    L S   +    L A   +  
Sbjct: 373 FKQRYQLDLPTH-YEDVALLAWLHNSSLEPQMSALGRLFSLESFSSKPHAPLNAAQMESN 431

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
           T              +  L             ++ +        E  L  +   +  +G+
Sbjct: 432 TRLIARAYTHYKDTLSPDL------------LQLAR------ELEYPLLAILLEMQAQGF 473

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLE 252
            +D+A   TL Q        L  ++ +L      +    ++   +L+ + GL        
Sbjct: 474 SLDLAYFQTLKQEFAQSLNTLQNQIHAL-AHTDINVNSTKQWAHFLYQDLGLQAKGVKKI 532

Query: 253 DLTETTCQRVLSSNKKLTP-------QAIQVFNN---RMRASRSAVLKLNTLVEAMNSDG 302
               +T +  L + ++          +   + +         +     +  L+   N  G
Sbjct: 533 KTGFSTDEASLKALQETYQGARVQGVEVATLLDALLGYRELFKLQSTYVEPLLTQ-NQHG 591

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           ++         + + R S      QN+P  +   +++                       
Sbjct: 592 KIHTIFYQHT-TASSRLSSAHPNLQNIPIRTPLGKKIA---------------------- 628

Query: 363 CVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
                 I S     L+ AD + IE R+LA  + +   ++AF   +D+++ T    FN   
Sbjct: 629 ---HGFIPSAPDLLLLGADYSQIELRLLAHFSNDTHLIQAFLQNQDIHLNTALALFNDPH 685

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
            +                     A      A   G+                        
Sbjct: 686 KRH--------------------AAKSINFALIYGMGP---------------------- 703

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                      A          +     +      + +  ++L        E     +  
Sbjct: 704 --------RRLADTLKISQQEAKDYIDRYFNAFPTIKDFLDQLK--ARILQEGKITTLLG 753

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            +R                                             +  Y  +    +
Sbjct: 754 HQRHFDFTNATPKL----------------------------------QAEYLREGINTL 779

Query: 602 VQAVSRDILAEGMMNATKAGY-----DIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNP 655
            Q  + D++   M+             +++ VHDEI+ E P T     +  +  +M    
Sbjct: 780 FQGSASDLVKLAMLKIHAHIAKYPRVKMLVQVHDEIILEVPKTQVSQIALEIKTIMEGI- 838

Query: 656 SWAKGLPLKAEGYESKRYR 674
            +   +PL+        + 
Sbjct: 839 -YPLKVPLECHTSYGANWG 856


>gi|170592393|ref|XP_001900953.1| DNA polymerase I family protein [Brugia malayi]
 gi|158591648|gb|EDP30253.1| DNA polymerase I family protein [Brugia malayi]
          Length = 475

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/507 (14%), Positives = 151/507 (29%), Gaps = 117/507 (23%)

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E +   L   I   G   D   A TLN  +  + T+++ +   ++     +    
Sbjct: 69  KSVELELKSVVLFSEIEITGIAFDRNKALTLNSKLQQKLTEIEAKAYGISGIP-FNFGSA 127

Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            ++   LF+   +   + +     +T + VL       P    +   R   + +    L 
Sbjct: 128 AEISQILFVRLQIPPPNASTGRHYSTNKIVLQQLAPKYPIISLILEWRR-INTALTTSLP 186

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L++   SDGR+R        +  GR        QN+ + +                   
Sbjct: 187 ILLKLCCSDGRIRANFITHCCT--GRVLTVHPNVQNVQKDAIID---------------- 228

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                      +RS  I  +G+ L+ +D   +E R+LA ++ +   +  F T +D +   
Sbjct: 229 --------GFSIRSLFIVPKGRILLSSDYRQLEMRMLAHLSADPNLISLFLTKDDFFEII 280

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
             + +N       K  R   K +   + Y  G                            
Sbjct: 281 TNK-WNKNETLHIKVDRNKVKQLCYGIIYGMG---------------------------- 311

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                               + E        +++  ++ Q   +V    +++        
Sbjct: 312 ----------------AISLSKELGISKQHAQQMIISFFQLFPKVRTWMDKILAMCRT-- 353

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                                   N  +    GR      + +  + L T   Q  R+  
Sbjct: 354 ------------------------NGFVSTLLGRRRFLPQITS--AVLQTELAQAERQAI 387

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFN-ASML 647
                    +Q    ++    ++N  K        IV+ +HDE++ ET ++   +   ++
Sbjct: 388 ------NTCIQGSVAELFKMALLNLRKNLLGTNSSIVMQLHDEVLIETDESSIASIVEII 441

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYR 674
            H MTS       +PL  +    K + 
Sbjct: 442 KHSMTSVTP-NLRVPLAVKISFGKSWG 467


>gi|144453|gb|AAA23103.1| putative DNA polymerase [Citrus greening disease-associated
           bacterium]
          Length = 206

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 129/206 (62%), Gaps = 2/206 (0%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ LFID ETRSP  L K G+  YAE   + L A+ +D  PV+LWD      +P  L + 
Sbjct: 1   MSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 60

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL+   
Sbjct: 61  LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 120

Query: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K EEGK LIARFCKG      YD  + NH +AW LF EYCK DV  TRE+FK L PL
Sbjct: 121 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 180

Query: 179 SSKEQELWYLDQTINDRGYCVDVALA 204
           + +E+ LW LDQ INDRGY +D+ L 
Sbjct: 181 NPEERTLWLLDQEINDRGYRIDLDLV 206


>gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 223

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 79/215 (36%), Positives = 113/215 (52%), Gaps = 7/215 (3%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP+ LK  L++
Sbjct: 10  LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHEPVKVWDVTQDKTMPKDLKAYLDD 68

Query: 64  TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SS 120
            ++  V HN   F+  +LK   N+D+P+ R   TLV A ++GLP AL ++ +   +    
Sbjct: 69  PEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 128

Query: 121 QKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K +EGK LI  FCK         R     H E W  F  Y   D+   REI++ L   +
Sbjct: 129 TKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLPRWN 188

Query: 180 SKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVD 212
               E   W LDQ IN RG C+DV LA +    V+
Sbjct: 189 MNFNETTLWQLDQRINLRGMCMDVELAKSALTAVE 223


>gi|307106974|gb|EFN55218.1| hypothetical protein CHLNCDRAFT_52598 [Chlorella variabilis]
          Length = 2117

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 95/725 (13%), Positives = 176/725 (24%), Gaps = 180/725 (24%)

Query: 29   CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN--- 85
             +   A  +               +   L+    +  V     +   +   L        
Sbjct: 1485 RLEGVAVSWRSGQAFYVPLHRRDDLLAELRPLFWSAAVEKATWDLRGQLAALAKVLGPGA 1544

Query: 86   LDIPIHRWICTLVLARSNGLPSALKA------VGEALKLSSQ---KMEEGKELIARFCKG 136
            L +P  +         + G P AL+       V   L        K E    + +   + 
Sbjct: 1545 LGVPGDQ---------AAGCPLALRDPLVDVRVAAWLGTPDDGRLKDESSHSVGSGRKEP 1595

Query: 137  ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
             T   +           W    +  +     +          +++ +++W L      RG
Sbjct: 1596 YTLSDMLKIRGGQAV--WAEATQGMQASTAASGARRADAGRRAAQARKMWQLL-RSRLRG 1652

Query: 197  YCVDVALAHT---LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE- 252
              +   L  T   L  ++     +L+    +       S    +++   LF    L    
Sbjct: 1653 DELLPPLWRTEMPLEPMLQRRIEELEGMAHAEAGQ-EFSLSSPQEVSRILFEVLKLAPPP 1711

Query: 253  ------DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM-------- 298
                      +T Q VL       P A  +F +R   +         L+  +        
Sbjct: 1712 CAKDLKSGGYSTGQEVLLEL-HEHPIARLIFEHRKLRTLLNRQGGPGLLPFVQGFKMHLA 1770

Query: 299  ------NSDG----RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                     G    R+RG++         R +      Q +P+P      L         
Sbjct: 1771 YAEAVSYPGGLVLKRIRGSINQTC-----RLAMDEPNLQCVPKPRAYKVLLTPG---ELG 1822

Query: 349  SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF-ETGED 407
            S  S        +  +R+  +A  G  L+ AD   IE R++A  +G+    + F E G D
Sbjct: 1823 SAASGASAHADRTANLRAAFVAPPGCVLLSADYRQIEFRLMAHFSGDPGLARVFSEDGAD 1882

Query: 408  LYVTTYARSFNVAPAQ-------------VTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +    A+       Q             VT+ QR   K +   L Y  GA         
Sbjct: 1883 PFRLLAAQWLGAPQEQARPRGWLGRGRRGVTQQQRDHAKQLTYGLLYGMGAAKLADE--- 1939

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
              L  +                  E +   +          +                  
Sbjct: 1940 --LGCSVAEARTAQEKFRASMPGIEAWQARVVAECRRLGYVETL---------------- 1981

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                                     A +RR +P +  +            GR     +  
Sbjct: 1982 -------------------------AGRRRYLPNINCR-----------DGRKRAAAERQ 2005

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------------- 620
               +                      + Q  + D+    M+                   
Sbjct: 2006 AKNT----------------------VCQGSAADLAKAAMVAIHTRLAAWLALGSGGNCG 2043

Query: 621  ---------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS-NPSWAKGLPLKAEGYE 669
                        +VL +HDE + E  +      + L    M          +PL+     
Sbjct: 2044 CGGGPGGGPAARLVLQIHDEFLLEVAEPLLEPVARLVRDCMEGLASGVRLRVPLRVRLAA 2103

Query: 670  SKRYR 674
               + 
Sbjct: 2104 GPSWG 2108


>gi|260816346|ref|XP_002602932.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
 gi|229288246|gb|EEN58944.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae]
          Length = 2215

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 93/690 (13%), Positives = 198/690 (28%), Gaps = 109/690 (15%)

Query: 33   FAFGFDDHPVELWDCVHD---PVMPQVLKEALENTDV--TIVAHNSYFERTVLKACFNLD 87
             A  +    +                 +K  LE  DV  + V  +   +   L     + 
Sbjct: 1564 IAVAYTTDEMIPPPLDDRLPVEERLHNIKSVLEKGDVCSSQVLFDLKPQYKALALGCGIT 1623

Query: 88   IPIHRWICTLVLARSNGLPSALKA-VGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            +    +    V        + +K+  G   + + Q+    + L   F  G     + +  
Sbjct: 1624 MN-GDFEDPKVADWLLDPGAKVKSFHGTVQRFTPQESYLLQGLGGCFGVGSLAMTVQNSG 1682

Query: 147  KPNHREAWR-LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
                R A   +   +   ++    E           E         +   G         
Sbjct: 1683 SGRMRAALECVLTFHMMEELDKLLEAQGLSTAFRDVEMPSLVTLARMELNGAGFSPVECE 1742

Query: 206  TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL-----------EDL 254
            T  QI+  +   L+++   L      +    + +   LFLE  L                
Sbjct: 1743 TQCQIMQAKLRMLEEQAYQLAGHT-FALTSPDDIAQVLFLELKLPANGDPSSTTNPQPRK 1801

Query: 255  T-------------E--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
            T             +  +T + VL   KK       +   R  ++      +  L +   
Sbjct: 1802 TLGTARPARGRKPLKHLSTSKDVLEKLKKFHALPGVILEWRRISNSL-TKVVFPLQKEKV 1860

Query: 300  SDGRLRGTLQFLGA---SRTGRWSGCVFPPQNLPRP-------------------SRSHE 337
             + RL     +      + TGR +      QN+P+                    + S  
Sbjct: 1861 YNPRLNMDRIYGNCDLHTATGRVTFHDPNLQNIPKDFEIEMPTIIGDSPPPGCGETVSKR 1920

Query: 338  ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            +  +++              Q  S  +R   I  +G  L+ AD + +E R++A ++ +  
Sbjct: 1921 KGRKVVRRTDGRRVESDGAGQAFSVSLRHAFIPFQGGVLLAADYSQLELRIIAHLSQDSK 1980

Query: 398  KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
              +   +G+D++    ++   VA   V+   R   K +   + Y  GAKA  +      L
Sbjct: 1981 LTQVLNSGQDVFKAIASQWKGVAMEDVSDKLRQQAKQLCYGMIYGIGAKALGE-----QL 2035

Query: 458  NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
             ++         +   ++     +     +   +        G          R+    +
Sbjct: 2036 GVDEEEGACFIETFKSKYTGMRRYLHTTVDQCKKDGFVQTMAGR---------RRYLPGI 2086

Query: 518  SELWNELH-QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
            +E  + +   A  Q +       A       +V + +    L    P+ R    +D    
Sbjct: 2087 TEGNHHVRCHAERQAVNTTVQGSAADLVKKAMVSIDQKLQKLF---PATRRSHRQD---- 2139

Query: 577  RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET 636
                     + +++ +                            G  ++L +HDE++ E 
Sbjct: 2140 ----TQKRSRRSQQPSSPP------------------------RGAYLILQLHDELIYEV 2171

Query: 637  PDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
               D    + +    M +    +  LP+K 
Sbjct: 2172 RREDVQQVAQIVKHEMENAVKLSVVLPVKV 2201


>gi|148705497|gb|EDL37444.1| DNA polymerase N [Mus musculus]
          Length = 467

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 74/541 (13%), Positives = 155/541 (28%), Gaps = 129/541 (23%)

Query: 166 TVTREIFKRLEPLSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            +T ++  +L+     +        L  +   + +    VD       + ++     +L+
Sbjct: 12  DLTMDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELE 71

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-----------TTCQRVLSSNKK 268
           QE   +            +L+  LF +  LHL    +           +T + +      
Sbjct: 72  QEAHFVAG-EQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMTQWRTS 130

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P           +   + L    L+ +++S      T    G + TGR S      Q 
Sbjct: 131 GVPAGPHCCATTADSCLLSWLYPIGLLGSISS------TWNQTG-TVTGRLSAKHPNIQG 183

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           + +      +          ++T  P          R+  ++SEG   + AD + IE R+
Sbjct: 184 ISKHPIKISKPWNFKGKEEETVTISP----------RTLFVSSEGHTFLAADFSQIELRI 233

Query: 389 LAWMAGEQWKLKAFET--GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           LA ++G+   LK F+    +D++ T  ++  ++   +VT   R   K +  ++ Y     
Sbjct: 234 LAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYG---- 289

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                                                         A             
Sbjct: 290 ----------------------------------------AGKERLAACLGVTVLEATHF 309

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + + QK+ ++ +    +                                   +    GR
Sbjct: 310 LERFLQKYKKIKDFAQTVIGQCHSA--------------------------GYVTSILGR 343

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------ 620
                 +            Q  R+          +VQ  + D+    M+  + A      
Sbjct: 344 RRPLPRICAQDQ---QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPT 394

Query: 621 -GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMT-----SNPSWAKGLPLKAEGYESKRY 673
               +V  +HDE++ E  DT     A+++  +M              +PLK      + +
Sbjct: 395 LTARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 454

Query: 674 R 674
            
Sbjct: 455 G 455


>gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1]
 gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1]
          Length = 608

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 114/696 (16%), Positives = 204/696 (29%), Gaps = 171/696 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET          +  Y  D  + L  FG +     +       V       AL
Sbjct: 36  RILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTAL 86

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGL--------PSALKA 111
           +      V HN+ F+  V++    + +     +   T + +                L+ 
Sbjct: 87  Q-KVQRFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLEE 145

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           + +   +     EE K  +AR  K        D+           +  Y   D  +   +
Sbjct: 146 LTKFY-IDPVTAEEVKASMARLAKKHKTT--KDKIWALVDLDDPDYELYAGMDTILVSRL 202

Query: 172 FKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             ++ PL           E +L  +   +   G+ +DV  +  L+  +  +         
Sbjct: 203 LGKVAPLVPEPSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTAVAR 262

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV----LSSNKKLTPQAIQVFNN 279
                 V S    EKL   L   TG+ ++  T T  ++V    L +  +      +    
Sbjct: 263 --YAYGVDSVNSTEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKAAIE 319

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +        +   +E  +++ R+   +  L A RT R S      QNLP         
Sbjct: 320 AKKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTNNPSAQNLPAGD------ 372

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   VR C +A  G+ +V  D    E RVLA +A ++  +
Sbjct: 373 ----------------------WMVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMI 410

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+   DL+  T            +   R +GK++  A  +  G       A       
Sbjct: 411 QAFKDNADLHQITA---------DASGVDRKVGKMVNFAYVFGSGPSTIAAQA------- 454

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       +RV   + Q +  V+ 
Sbjct: 455 -------------------------------------GITFPEAKRVIAGFEQSYPEVTA 477

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           L   L +                             N   ++ P+GR L           
Sbjct: 478 LSKSLQREA--------------------------ANLGYVITPTGRRLPVDPDR----- 506

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV--LTVHDEIVCETP 637
                         G      +VQ+ SRD+ A  ++   +AG   +  L +HDE++   P
Sbjct: 507 --------------GYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLASVP 552

Query: 638 -DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
               E  A  +  +M       +G+ +  +     R
Sbjct: 553 EAEAEATAKEIGRIMEQTF---RGVLINTDPEVGGR 585


>gi|301786873|ref|XP_002928855.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Ailuropoda
            melanoleuca]
          Length = 2634

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 100/798 (12%), Positives = 197/798 (24%), Gaps = 229/798 (28%)

Query: 9    ETRSPIDLTKCGIC-KYAEDVCVILFAFGFDDHPVELWDC----VHDP------------ 51
            ET     +   G+  K  +D+ ++  A  +       +       H              
Sbjct: 1927 ET----PIRDYGVPVKGCDDILLVGLAVCWGGRDAYYFSLQKEQTHPEISSSLVAPSLDP 1982

Query: 52   --VMPQVLKEALE------NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVL 99
               + + +   L       + + +++     ++      +L     + +    +    V 
Sbjct: 1983 GLTVKERIWYLLSCFQEESDKERSVII----YDFIQSYKILLLSCGISLE-QSYEDPKVA 2037

Query: 100  ARSNGLPSA----LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
                   S        V   L      ++  +        G      +        E+  
Sbjct: 2038 CWLLDPDSKEPTLHSIVSSFLPHELPLLDGIETGQGIQSLGLNVNSEHSGRYRASVESIL 2097

Query: 156  LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
             F       +    +     +     E    Y    +   G     A   +   I+  + 
Sbjct: 2098 TFN--AMNQLNSLLKKENLKDVFCKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKL 2155

Query: 216  TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE----------------------- 252
              ++ +   L      S    + +   LFLE  L                          
Sbjct: 2156 DAIETQAYQLAGHS-FSFTSSDDIAEVLFLELKLPPNGEIKNQNSKKTLGSTRRGNDNGR 2214

Query: 253  --DLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDG 302
               L +  +T + VL+  K L P    +   R   +  A+ K+         +       
Sbjct: 2215 KLKLGKQFSTSKDVLNKLKALHPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGME 2272

Query: 303  RLRGTLQFLGASRTGRWSGCVFPPQNLPR--------------------------PSRSH 336
            R+    Q   A+  GR +      QN+PR                               
Sbjct: 2273 RIYPVSQSHTAT--GRVTFTEPNIQNVPRDFEIKMPTVVGESPPSQALGKGLLPMNRGKE 2330

Query: 337  EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +       H         D     S  +R   +   G  ++ AD + +E R+LA ++ ++
Sbjct: 2331 KSCGINSGHQAQMEERASDRGMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSHDR 2390

Query: 397  WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
              ++   TG D++ +  A    + P  V  D R   K +   + Y  GAK+  +      
Sbjct: 2391 RLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----Q 2445

Query: 457  LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
            + +         +S    +    +F R   +N                            
Sbjct: 2446 MGIKENDAACYIDSFKSRYTGINHFMRETVKNCKRDGFVQTI------------------ 2487

Query: 517  VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                                     +RR +P +                    Y      
Sbjct: 2488 -----------------------LGRRRYLPGINDNN---------------PYHKAHAE 2509

Query: 577  RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----------------- 619
            R  +NTT                  VQ  + DI+    +N  K                 
Sbjct: 2510 RQAINTT------------------VQGSAADIVKVATVNIQKQLETFHSTFKSHGHREG 2551

Query: 620  ----------------------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPS 656
                                   G   +L +HDE++ E  + D    + +    M S   
Sbjct: 2552 MLQSERTGLLPKRKLQGVFCPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAME 2611

Query: 657  WAKGLPLKAEGYESKRYR 674
                + LK +      + 
Sbjct: 2612 --LSVKLKVKVKIGASWG 2627


>gi|158079357|ref|YP_001504170.1| putative DNA polymerase [Enterococcus phage phiEF24C]
 gi|157890201|dbj|BAF81329.1| putative DNA polymerase [Enterococcus phage phiEF24C]
          Length = 1023

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 109/842 (12%), Positives = 186/842 (22%), Gaps = 283/842 (33%)

Query: 7   DFETRSPI-DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------VMPQV 56
           D ET S   DL              ++ +  + +         H            +  +
Sbjct: 227 DLETNSLRGDLLGAKP---------LVMSMSWLEGQGVTIPLEHHEAKWSPEELNEIYDL 277

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL----------------- 99
            ++ L +     V  N  F+   L               T +                  
Sbjct: 278 FEKFLADRQQPKVGQNIQFDIRFLMNTKGFT-EFEDNRDTKIAYYLIVSQKVDTSKRLSD 336

Query: 100 -ARSNGLPSALKAVGEALK--LSSQKMEEGKELIARFCKGET------------------ 138
            A             E  K       +   K  I  F + E                   
Sbjct: 337 IAYELTDMGGYDEPLEQYKKQYKEDYIARKKAEIDAFKEAEKERVECEFKIAMDRYKQEV 396

Query: 139 -------------------------------HECLYDRNKPNHREAWRLFGEYCKGDVTV 167
                                             +   N         +   Y  GDV  
Sbjct: 397 KEAKLIGKPTKSIIKPVKEKVVVPKKSDIKLINEIDGGNFNYDWIPLEIMHPYASGDVDC 456

Query: 168 TREIFKRLEPLSSKEQELWYL-----------DQTINDRGYCVDVALAHTLNQIVDVERT 216
              I+  L     +  ++  L              I   G  +D   A  +  I   E  
Sbjct: 457 CLRIYNVLYKRIEEHPKMLELWLGFYPRLTATLAHIEASGVLLDSEYAELVENIYTEEEH 516

Query: 217 KLDQELESLTYGLV--------------------------------------------SS 232
           +L  E+  L                                                   
Sbjct: 517 RLLNEIRKLPEVKEVEDEHMMFYKEGLKEMTKPVKDRDASVARLRDKYKITDSENKVHFK 576

Query: 233 SRCLEKLKTWLFLETGLHLE------DL---------------TETTCQRVLSSNKKLTP 271
               E     LF   GL L                           T +  L+   +  P
Sbjct: 577 PSSSEHKGRLLFKVMGLTLPYDKESIKKETFDNGVPEHQLTWRDYKTDKHALAYIAENYP 636

Query: 272 QAIQ---VFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
           +A     +     + +         L +   N DG + G+    G   T R S      Q
Sbjct: 637 EAKHVAELLLEYSKVNTLKNNFAQKLPKLASNKDGMIHGSYNSTGTEST-RLSANNPNMQ 695

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            L                         D    I    R+     EG  ++  D + +E R
Sbjct: 696 QL---------------SSKVGDPRRFDYKYPIKRLFRTRF---EGGGMLQLDYSALEMR 737

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +L  +A ++   +AF  GED++  T +  + +    V KD R   K +   +        
Sbjct: 738 ILGLIAKDKAMTQAFINGEDMHEATASLVWKLPKDNVPKDMRQRAKSVNFGI-------- 789

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                                                  E+    A +        ER+ 
Sbjct: 790 ------------------------------------AYGESPFSIAPKLGVTVEEAERIF 813

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + +      + +   E HQ  ++    G     +  R +      KDK            
Sbjct: 814 EEYFASKPSIKQFIEETHQFAQRY---GYVETLQGHRRLLRDSFSKDKKVF--------- 861

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAG 621
                       +               K    I+Q     +    M      +      
Sbjct: 862 ---------NGAMR--------------KSVNTIIQGTGAYLTNLSMVYIDEYIRKHNKR 898

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP------SW---AKGLPLKAEGYESK 671
             IV+TVHD +V + P  +    + +   +M + P       W       P+ A+    +
Sbjct: 899 SRIVITVHDSLVIDCPRDEVDEMAKVAKYIMENLPIDFLMIEWEGKEMRYPIVADVEIGE 958

Query: 672 RY 673
            Y
Sbjct: 959 NY 960


>gi|139394648|ref|NP_955452.3| DNA polymerase theta [Homo sapiens]
 gi|325511332|sp|O75417|DPOLQ_HUMAN RecName: Full=DNA polymerase theta; AltName: Full=DNA polymerase eta
 gi|225000062|gb|AAI72289.1| Polymerase (DNA directed), theta [synthetic construct]
          Length = 2590

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D  V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 1895 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1954

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 1955 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 2013

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 2014 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 2072

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 2073 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2131

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 2132 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2191

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325
            P    +   R   + +    +  L      +      R+    Q   A+  GR +     
Sbjct: 2192 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 2248

Query: 326  PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358
             QN+PR                             +  +                 D   
Sbjct: 2249 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 2308

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    
Sbjct: 2309 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 2368

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            + P  V  D R   K +   + Y  GAK+  +      + +         +S    +   
Sbjct: 2369 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2423

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
              F     +N          +G          R+    + +                   
Sbjct: 2424 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 2455

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                        +  YR     R  +NT                
Sbjct: 2456 ----------------------------NNPYRKAHAERQAINT---------------- 2471

Query: 599  ENIVQAVSRDILAEGMMNATK--------------------------------------- 619
              IVQ  + DI+    +N  K                                       
Sbjct: 2472 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPI 2529

Query: 620  AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
             G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2530 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2583


>gi|119599917|gb|EAW79511.1| polymerase (DNA directed), theta, isoform CRA_b [Homo sapiens]
          Length = 1762

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D  V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 1067 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1126

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 1127 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1185

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 1186 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1244

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 1245 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 1303

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 1304 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 1363

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325
            P    +   R   + +    +  L      +      R+    Q   A+  GR +     
Sbjct: 1364 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 1420

Query: 326  PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358
             QN+PR                             +  +                 D   
Sbjct: 1421 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 1480

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    
Sbjct: 1481 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 1540

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            + P  V  D R   K +   + Y  GAK+  +      + +         +S    +   
Sbjct: 1541 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 1595

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
              F     +N          +G          R+    + +                   
Sbjct: 1596 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 1627

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                        +  YR     R  +NT                
Sbjct: 1628 ----------------------------NNPYRKAHAERQAINT---------------- 1643

Query: 599  ENIVQAVSRDILAEGMMNATK--------------------------------------- 619
              IVQ  + DI+    +N  K                                       
Sbjct: 1644 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 1701

Query: 620  AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
             G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 1702 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 1755


>gi|119599919|gb|EAW79513.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens]
 gi|119599920|gb|EAW79514.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens]
          Length = 2270

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D  V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 1575 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1634

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 1635 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1693

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 1694 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1752

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 1753 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 1811

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 1812 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 1871

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325
            P    +   R   + +    +  L      +      R+    Q   A+  GR +     
Sbjct: 1872 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 1928

Query: 326  PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358
             QN+PR                             +  +                 D   
Sbjct: 1929 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 1988

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    
Sbjct: 1989 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 2048

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            + P  V  D R   K +   + Y  GAK+  +      + +         +S    +   
Sbjct: 2049 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2103

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
              F     +N          +G          R+    + +                   
Sbjct: 2104 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 2135

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                        +  YR     R  +NT                
Sbjct: 2136 ----------------------------NNPYRKAHAERQAINT---------------- 2151

Query: 599  ENIVQAVSRDILAEGMMNATK--------------------------------------- 619
              IVQ  + DI+    +N  K                                       
Sbjct: 2152 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 2209

Query: 620  AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
             G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2210 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2263


>gi|119599916|gb|EAW79510.1| polymerase (DNA directed), theta, isoform CRA_a [Homo sapiens]
          Length = 2725

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D  V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 2030 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 2089

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 2090 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 2148

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 2149 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 2207

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 2208 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2266

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 2267 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2326

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325
            P    +   R   + +    +  L      +      R+    Q   A+  GR +     
Sbjct: 2327 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 2383

Query: 326  PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358
             QN+PR                             +  +                 D   
Sbjct: 2384 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 2443

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    
Sbjct: 2444 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 2503

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            + P  V  D R   K +   + Y  GAK+  +      + +         +S    +   
Sbjct: 2504 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2558

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
              F     +N          +G          R+    + +                   
Sbjct: 2559 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 2590

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                        +  YR     R  +NT                
Sbjct: 2591 ----------------------------NNPYRKAHAERQAINT---------------- 2606

Query: 599  ENIVQAVSRDILAEGMMNATK--------------------------------------- 619
              IVQ  + DI+    +N  K                                       
Sbjct: 2607 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 2664

Query: 620  AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
             G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2665 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2718


>gi|62089320|dbj|BAD93104.1| DNA polymerase theta variant [Homo sapiens]
          Length = 2214

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D  V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 1519 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1578

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 1579 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1637

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 1638 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1696

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 1697 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 1755

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 1756 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 1815

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325
            P    +   R   + +    +  L      +      R+    Q   A+  GR +     
Sbjct: 1816 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 1872

Query: 326  PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358
             QN+PR                             +  +                 D   
Sbjct: 1873 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 1932

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    
Sbjct: 1933 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 1992

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            + P  V  D R   K +   + Y  GAK+  +      + +         +S    +   
Sbjct: 1993 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2047

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
              F     +N          +G          R+    + +                   
Sbjct: 2048 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 2079

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                        +  YR     R  +NT                
Sbjct: 2080 ----------------------------NNPYRKAHAERQAINT---------------- 2095

Query: 599  ENIVQAVSRDILAEGMMNATK--------------------------------------- 619
              IVQ  + DI+    +N  K                                       
Sbjct: 2096 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 2153

Query: 620  AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
             G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2154 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2207


>gi|76364226|gb|AAR08421.2| DNA polymerase theta [Homo sapiens]
          Length = 2590

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D  V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 1895 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1954

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 1955 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 2013

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 2014 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 2072

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 2073 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2131

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 2132 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2191

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325
            P    +   R   + +    +  L      +      R+    Q   A+  GR +     
Sbjct: 2192 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 2248

Query: 326  PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358
             QN+PR                             +  +                 D   
Sbjct: 2249 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 2308

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    
Sbjct: 2309 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 2368

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            + P  V  D R   K +   + Y  GAK+  +      + +         +S    +   
Sbjct: 2369 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2423

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
              F     +N          +G          R+    + +                   
Sbjct: 2424 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 2455

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                        +  YR     R  +NT                
Sbjct: 2456 ----------------------------NNPYRKAHAERQAINT---------------- 2471

Query: 599  ENIVQAVSRDILAEGMMNATK--------------------------------------- 619
              IVQ  + DI+    +N  K                                       
Sbjct: 2472 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 2529

Query: 620  AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
             G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2530 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2583


>gi|297285105|ref|XP_001111254.2| PREDICTED: DNA polymerase theta isoform 2 [Macaca mulatta]
          Length = 2672

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 96/778 (12%), Positives = 192/778 (24%), Gaps = 217/778 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDP---VMPQVLKEALENTDVTI---VAHNSY---- 74
             +D+ V+  A  +       +    +     +   L     +  +T+   + H       
Sbjct: 1977 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRIWH-LQSCLR 2035

Query: 75   -----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEAL 116
                       ++      +L     + +    +    V        S    L ++  + 
Sbjct: 2036 KESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSF 2094

Query: 117  KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                  + EG E          +       +        L        +    +     +
Sbjct: 2095 LPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQD 2153

Query: 177  PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                 E    Y    +   G     A       I+  +   ++ +   L      S    
Sbjct: 2154 VFRKVEMPSQYCLALLELNGIGFSTAECEGQKHIMQAKLDAIETQAYQLAGHS-FSFTSS 2212

Query: 237  EKLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKL 269
            + +   LFLE  L                      ++  +       +T + VL+  K L
Sbjct: 2213 DDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKAL 2272

Query: 270  TPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
             P    +   R   +  A+ K+         +       R+    Q   A+  GR +   
Sbjct: 2273 HPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFTE 2328

Query: 324  FPPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDP 356
               QN+PR                             +S +                 D 
Sbjct: 2329 PNIQNVPRDFEIKMPTLVGESPPSQAIGKGLLPMGRGKSKKGCSLNPGRQAQMEERAADR 2388

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A  
Sbjct: 2389 GMPFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEW 2448

Query: 417  FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
              + P  V  D R   K +   + Y  GAK+  +      + +         +S    + 
Sbjct: 2449 KMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYT 2503

Query: 477  DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                F R   +N          +G          R+    + +                 
Sbjct: 2504 GINQFMRETVKNCKRDGFVQTILGR---------RRYLPGIKD----------------- 2537

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                          +  Y      R  +NTT             
Sbjct: 2538 ------------------------------NNPYHKAHAERQAINTT------------- 2554

Query: 597  LTENIVQAVSRDILAEGMMNATK------------------------------------- 619
                 VQ  + DI+    +N  K                                     
Sbjct: 2555 -----VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLLRKRKLQGMFC 2609

Query: 620  --AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
               G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2610 PVRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2665


>gi|4163931|gb|AAD05272.1| DNA polymerase eta [Homo sapiens]
          Length = 1154

 Score =  186 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D  V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 461  CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 520

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 521  ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFF 579

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 580  PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 638

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 639  FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 697

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 698  DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 757

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325
            P    +   R   + +    +  L      +      R+    Q   A+  GR +     
Sbjct: 758  PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 814

Query: 326  PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358
             QN+PR                             +  +                 D   
Sbjct: 815  IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 874

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    
Sbjct: 875  PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 934

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            + P  V  D R   K +   + Y  GAK+  +      + +         +S    +   
Sbjct: 935  IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 989

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
              F     +N          +G          R+    + +                   
Sbjct: 990  NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 1021

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                        +  YR     R  +NT                
Sbjct: 1022 ----------------------------NNPYRKAHAERQAINT---------------- 1037

Query: 599  ENIVQAVSRDILAEGMMNATK--------------------------------------- 619
              IVQ  + DI+    +N  K                                       
Sbjct: 1038 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPI 1095

Query: 620  AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
             G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 1096 RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 1149


>gi|298240|gb|AAB25243.1| DNA polymerase homolog [bacterium-like organism, citrus greening
           disease-associated, Peptide, 207 aa]
          Length = 207

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 106/204 (51%), Positives = 127/204 (62%), Gaps = 2/204 (0%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            LFID ETRSP  L K G+  YAE   + L A+ +D  PV+LWD      +P  L + L 
Sbjct: 4   KLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQYLR 63

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ- 121
           +  V  VAHNS FER + K    +DIP  RWICT VLAR+NGLPS+LK    AL+     
Sbjct: 64  DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPEHL 123

Query: 122 -KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K EEGK LIARFCKG      YD  + NH +AW LF EYCK DV  TRE+FK L PL+ 
Sbjct: 124 TKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPLNP 183

Query: 181 KEQELWYLDQTINDRGYCVDVALA 204
           +E+ LW LDQ INDRGY +D+ L 
Sbjct: 184 EERTLWLLDQEINDRGYRIDLDLV 207


>gi|242083352|ref|XP_002442101.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor]
 gi|241942794|gb|EES15939.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor]
          Length = 917

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 92/705 (13%), Positives = 202/705 (28%), Gaps = 130/705 (18%)

Query: 28  VCVILFAFGFDDHPVELWDCVHD----------------PVMPQVLKEALENTDVTIVAH 71
             V   A  +++ P+   +   D                    + + + ++   V  +  
Sbjct: 275 FEVFGLAVCWENSPIYYCNFPKDLVTTSNNDFREMWGNFQRRWEKITDIMQQKSVQKMTW 334

Query: 72  NSYFERTVLKA-----------CFNLDI-PIHRWICTLVLARSNGLPSA----LK--AVG 113
           N   +   LK+             +  +      +     +     P +    L    + 
Sbjct: 335 NLKIQIQALKSPYISCQRLERFHLDHKMLDKVEVLDN---SYVLLSPVSVYNGLDICLLA 391

Query: 114 EALKLSSQKME--EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
             L    +       ++ + R    E       R+     +  +     C      TR +
Sbjct: 392 WVLWPDEESRTVPNLEKFVKRRLHSEAAAAAN-RDGRWRNQMHKAAHNGCCRRSAQTRAL 450

Query: 172 FKRLEPLSSKEQ---------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +  L+ L ++            L  +   +   G   D+        I+  +  +L++E 
Sbjct: 451 YTVLKKLLTQNLSDLVETIEAPLVNVLADMELWGIGADMDACLHARHIITKKLKELEKEA 510

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLED---LTE---TTCQRVLSSNKKLTPQAIQV 276
             L      S      +   L++   L +       +   +T ++ L   +   P    +
Sbjct: 511 YRLAG-KNFSLNATADIADILYVHLKLPVPKGCEKGKLHPSTDKQSLDHLRDQHPIIPVI 569

Query: 277 FNNRMRASRSAVLKLNTL---VEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRP 332
             +R   ++     L ++    +      R      +   ++ TGR S      Q +   
Sbjct: 570 KEHR-TLAKLLNGTLWSICSRAQLCTQSQRYIIHGNWLQTSTATGRLSMEEPNLQCV--- 625

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAW 391
                E         ++              VR   I   E    V AD + IE R++A 
Sbjct: 626 -----EHLVEFDTGKSNKDYCMSVDDHHKINVRDFFIPTKENWLFVTADYSQIELRLMAH 680

Query: 392 MAGEQWKLK-AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            + +   ++   +   D++    +R  +   A ++  +R   K +   + Y  GA +  +
Sbjct: 681 FSKDPTLVELLSKPDGDVFTMIASRWADKEEALISSKERENTKRLIYGILYGMGANSLAE 740

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                 L  +T     K  S    +    ++   +  +  +    +  +G    R     
Sbjct: 741 -----QLECSTEDAAQKIQSFRRLFPGVSSWLHEVVLSCRQKGYVETLLGR--RRFLTKI 793

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              +S+      +  +    +I  G A    K   +                        
Sbjct: 794 TAGNSKEKA---KAQRQAVNSICQGSAADIIKVAMI----------------------RL 828

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
             V  NR+    +T ++TR+++  G                            ++L VHD
Sbjct: 829 HSVITNRTRATDSTDEVTRKFSEFGGQC------------------------HLILQVHD 864

Query: 631 EIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674
           E+V E        A  L  + M    S    +PL+ +    K + 
Sbjct: 865 ELVLEVVPCMVAQAGRLLQICMEEAASLL--VPLRTKIKVGKTWG 907


>gi|194742333|ref|XP_001953657.1| GF17871 [Drosophila ananassae]
 gi|190626694|gb|EDV42218.1| GF17871 [Drosophila ananassae]
          Length = 2135

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/672 (12%), Positives = 185/672 (27%), Gaps = 149/672 (22%)

Query: 26   EDVCVILFAFGFDDHPVELWDCVHDPVM---------PQVLKEALENTDVTIVAHNSYFE 76
            +   +   +F  D H   +                   Q + +    TD+T+V H +  +
Sbjct: 1565 DSTYIDCLSFCVDSH--YVVHFKMQEEKGRGVSTSLKLQEISKIFARTDLTLVMHKTKDQ 1622

Query: 77   RTVLKACFNLDIPIH--RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
              V+      ++     ++    V +                 +  Q   E   L+    
Sbjct: 1623 LKVILQAIP-ELKTIAVKFEDPNVASWLMQPDRN----CSFQNMCQQYAPECLNLLNLCG 1677

Query: 135  KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYL 188
             G  +               R   E     V +        E  + ++     E  L  +
Sbjct: 1678 SGLGYTSYGLDASSEVSAQVRAQVE-ACVSVHILNGQMKSLEEHQFIKVFRDNEMPLCLI 1736

Query: 189  DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
               +   G+ V       L   +     KL+ ++  L      +    + +   L +   
Sbjct: 1737 LAQMEVIGFPVKEHRLGNLISQIAGSMKKLEAKIFELNGSR-FNINSSQAVAKVLGIHRK 1795

Query: 249  LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
                    +T + VL   +        +     + +   V  +  L++    + R+ G  
Sbjct: 1796 ---PTGRVSTSREVLERLEAP---IANLICQYRKLNALLVKNVQPLMK-CCLNNRIHGHS 1848

Query: 309  QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                A+  GR S      QN+ +      +    I                     RS  
Sbjct: 1849 ITNTAT--GRISMAEPNLQNVAKNFVVDVQDRGAIVS------------------CRSAF 1888

Query: 369  IASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            +  +  + L+ AD   +E R+LA ++ ++  + A  +  D++ +  A    +  ++V+  
Sbjct: 1889 MPMDSTRCLLSADFCQLEMRILAHLSQDKALVAAMNSPRDIFTSISAHWHRMNESEVSDQ 1948

Query: 428  QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
             R   K +   + Y                                              
Sbjct: 1949 LREGTKKICYGIIYGMS------------------------------------------- 1965

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
               + A E        E + + +   +  +    N L +                     
Sbjct: 1966 -MRKLADELNVTEQEAEVLSEQFHSNYPGIRSYTNRLIKYAR------------------ 2006

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                    +   +   +GR     ++ +  +    T ++  R+         + +Q  + 
Sbjct: 2007 --------HKGYVETITGRRRYLENIRSEDAG---TRKKAERQA------VNSTIQGSAA 2049

Query: 608  DILAEGMMN-------------ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653
            DI    ++                +   ++VL +HDE++ E P       + L   +M +
Sbjct: 2050 DIAKVAIIKSVKYMRRHCQKLFIDENSVNLVLHIHDELMFEVPADKAKKIAKLLKVVMEA 2109

Query: 654  NPSWAKGLPLKA 665
            +      +PLK 
Sbjct: 2110 SAR--LTVPLKV 2119


>gi|332225568|ref|XP_003261953.1| PREDICTED: DNA polymerase theta, partial [Nomascus leucogenys]
          Length = 2473

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 97/777 (12%), Positives = 191/777 (24%), Gaps = 215/777 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDP---VMPQVLKEALENTDVTI--VAHNSY----- 74
             +D+ V+  A  +       +    +     +   L     +  +T+     N       
Sbjct: 1778 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWNLQSCLRK 1837

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 1838 ESDKERSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1896

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 1897 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1955

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 1956 FRKVEMPSQYCLALLELNGIGFSAAECESQKHIMQAKLDAIETQAYQLAGHS-FSLTSSD 2014

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 2015 DIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKALH 2074

Query: 271  PQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            P    +   R   +  A+ K+         +       R+    Q   A+  GR +    
Sbjct: 2075 PLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFIEP 2130

Query: 325  PPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPL 357
              QN+PR                             +  +                 D  
Sbjct: 2131 NIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYTKGCSLNPRCQAQMEERAADRG 2190

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
               S  +R   +   G  ++ AD + +E R+LA ++ ++  ++A  TG D++ +  A   
Sbjct: 2191 MPFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQALNTGADVFRSIAAEWK 2250

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             + P  V  D R   K +   + Y  GAK+  +      + +         +S    +  
Sbjct: 2251 MIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTG 2305

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
               F R   +N                                                 
Sbjct: 2306 INQFMRETVKNCKRDGFVQTI--------------------------------------- 2326

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                +RR +P +                    Y      R  +NTT              
Sbjct: 2327 --LGRRRYLPGIEDNN---------------PYHKAHAERQAINTT-------------- 2355

Query: 598  TENIVQAVSRDILAEGMMNATK-------------------------------------- 619
                VQ  + DI+    +N  K                                      
Sbjct: 2356 ----VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCP 2411

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
              G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2412 IRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2466


>gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
 gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361]
          Length = 261

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 93/363 (25%), Gaps = 113/363 (31%)

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
           R S      QN+P      +E                         +R C I     K  
Sbjct: 1   RLSSSDPNLQNIPVRDDDGKE-------------------------IRKCFIPEPSCKFF 35

Query: 378 VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
            AD + IE R++A ++ ++  ++AF  G D++  T ++ +  A  +VT  QR   K    
Sbjct: 36  SADYSQIELRIMAHLSCDENMMEAFREGFDIHRATASKIWKEAMDEVTDSQRKQAKQAN- 94

Query: 438 ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                             G+     A  +  ++                           
Sbjct: 95  -------------FGIIYGITTYGLAQRMGIDNG-------------------------- 115

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                  ++   +     +V E   +  +   +                           
Sbjct: 116 ----EARQLIDDYFTTFPKVKEYMEKAKEIARE--------------------------R 145

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
                  GR     D+ +      T      R            +Q    DI+   M+  
Sbjct: 146 GYAETLFGRRRYLPDINSKN---GTVRGFAERNAINAP------IQGSEADIIKLAMIRI 196

Query: 618 TKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYES 670
            K          ++L VHDE+       +      +    M     +   +PL AE    
Sbjct: 197 WKRFKKEGIRSRMILQVHDELNFSVYPDEAEKVEKIVLEEMQGA--YPLHVPLIAEAGWG 254

Query: 671 KRY 673
             +
Sbjct: 255 DNW 257


>gi|296226149|ref|XP_002807658.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Callithrix
            jacchus]
          Length = 2550

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/778 (12%), Positives = 192/778 (24%), Gaps = 217/778 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDP---VMPQVLKEALENTDVTI---VAHNSY---- 74
             +D+ V+  A  +       +    +     +   L     +  +T+   + H       
Sbjct: 1855 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRIWH-LQSCLQ 1913

Query: 75   -----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEAL 116
                       ++      +L     + +    +    V        S    L ++  + 
Sbjct: 1914 KESDEERSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSF 1972

Query: 117  KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                  + EG E          +       +        L        +    +     +
Sbjct: 1973 LPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQD 2031

Query: 177  PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                 E    Y    +   G     A   +   I+  +   ++ +   L      S    
Sbjct: 2032 VFRKVEMPSQYCLALLELNGIGFSTAECESQKHILQAKLDAIETQAYQLAGHS-FSFTSS 2090

Query: 237  EKLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKL 269
            + +   LFLE  L                      ++  +       +T + VL+  K L
Sbjct: 2091 DDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKAL 2150

Query: 270  TPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
             P    +   R   +  A+ K+         +       R+    Q   A+  GR +   
Sbjct: 2151 HPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFTE 2206

Query: 324  FPPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDP 356
               QN+PR                             +  +                 + 
Sbjct: 2207 PNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKIKKGWSLNPGCQAQMEERAAER 2266

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   +G D++ +  A  
Sbjct: 2267 GMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNSGADVFRSIAAEW 2326

Query: 417  FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
              + P  V  D R   K +   + Y  GAK+  +      + +         +S    + 
Sbjct: 2327 KMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYT 2381

Query: 477  DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                F R   +N          +G          R+    + E                 
Sbjct: 2382 GINQFMRETVKNCKRDGFVQTILGR---------RRYLPGIKE----------------- 2415

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                          +  Y      R  +NTT             
Sbjct: 2416 ------------------------------NNPYHKAHAERQAINTT------------- 2432

Query: 597  LTENIVQAVSRDILAEGMMNATK------------------------------------- 619
                 VQ  + DI+    +N  K                                     
Sbjct: 2433 -----VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLLPKRKLQGMFC 2487

Query: 620  --AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
               G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2488 PIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2543


>gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
 gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii]
          Length = 788

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 118/399 (29%), Gaps = 83/399 (20%)

Query: 286 SAVLKLNTLVE--AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                +  L     +  DGR+  +L     + TGR S      Q   + S          
Sbjct: 458 LISNFIQPLQNGQILGPDGRVHCSLNIN--TETGRLSARRPNLQASLQRS---------- 505

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
               + +  +   L+     +R   IA  GK L+VAD   +E R+LA M+G +  L+AFE
Sbjct: 506 ----SFLNINQPALEKDRYKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFE 561

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G D +  T                R   +  E+ L +              G   +   
Sbjct: 562 AGGDFHSRTALNM--------YPHVRKAVETGEVLLEWS-------------GEGKSPVP 600

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            L     +        NF     +     + +        ++    W    S V E   +
Sbjct: 601 LLKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYEAQQTLDLWYNDRSEVKEWQTD 660

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T                            +    GRS    D+  + S L   
Sbjct: 661 TIERARITK--------------------------RVHTLLGRSRHLPDINTSISVLRGH 694

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP 637
              L R            VQ  + D+    M+   +       G+ ++L VHDE++ E P
Sbjct: 695 ---LERAAINTP------VQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGP 745

Query: 638 DTDEFNASML-YHLMTSNPSWA--KGLPLKAEGYESKRY 673
                 A  +    M+          + L  +   +K +
Sbjct: 746 SESVEEAQEIVVKCMSFPFEGENFLKVNLDVDADHAKSW 784



 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 83/302 (27%), Gaps = 58/302 (19%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFA------FGFDDHPVELW-DCVHDPV-MPQV 56
             D E  + ID+ K           +  F+        F      +W D ++    +  V
Sbjct: 29  ACDTE-VADIDVKKESP---VGHGKLTCFSIYCGVNVDFGGGKSRVWVDLLNGGPGILDV 84

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-----LPSALKA 111
            +   EN ++  + HN  F++ +L     +      +  T+ LAR        L  +L+A
Sbjct: 85  FRPYFENAEIKKIWHNYSFDKHILGNY-GIK-AAGFYADTMHLARLWDSARGGLGYSLEA 142

Query: 112 VGEALKLSSQ-----KMEEGKELIARFCKGETHECLYDRNKPNHREA------WRLFGEY 160
           +    K+             K+L A     +       +  P   E          +  Y
Sbjct: 143 LTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYY 202

Query: 161 CKGDVTVTREIFKRLEPLSS--------------------KEQELWYLDQTINDRGYCVD 200
              D   T  ++  L+                          +    +   +   G  VD
Sbjct: 203 SAHDSVCTWHLWSSLKKKLQKASWYMEGDKRGNMYQFYELYWRHFGDVLVQMEAEGMRVD 262

Query: 201 VALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
                 + ++   ++       +          +  +     +++  LF   G       
Sbjct: 263 TVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAMYMNVCSDVQIRQILF---GGTSNKKD 319

Query: 256 ET 257
            +
Sbjct: 320 PS 321


>gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
 gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii]
          Length = 788

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 118/399 (29%), Gaps = 83/399 (20%)

Query: 286 SAVLKLNTLVE--AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                +  L     +  DGR+  +L     + TGR S      Q   + S          
Sbjct: 458 LISNFIQPLQNGQILGPDGRVHCSLNIN--TETGRLSARRPNLQASLQRS---------- 505

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
               + +  +   L+     +R   IA  GK L+VAD   +E R+LA M+G +  L+AFE
Sbjct: 506 ----SFLNINQPALEKDRYKIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFE 561

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G D +  T                R   +  E+ L +              G   +   
Sbjct: 562 AGGDFHSRTALNM--------YPHVRKAVETGEVLLEWS-------------GEGKSPVP 600

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            L     +        NF     +     + +        ++    W    S V E   +
Sbjct: 601 LLKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYEAQQTLDLWYNDRSEVKEWQTD 660

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
             +    T                            +    GRS    D+  + S L   
Sbjct: 661 TIERARITK--------------------------RVHTLLGRSRHLPDINTSISVLRGH 694

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP 637
              L R            VQ  + D+    M+   +       G+ ++L VHDE++ E P
Sbjct: 695 ---LERAAINTP------VQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGP 745

Query: 638 DTDEFNASML-YHLMTSNPSWA--KGLPLKAEGYESKRY 673
                 A  +    M+          + L  +   +K +
Sbjct: 746 SESVEEAQEIVVKCMSFPFEGENFLKVNLDVDADHAKSW 784



 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 83/302 (27%), Gaps = 58/302 (19%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFA------FGFDDHPVELW-DCVHDPV-MPQV 56
             D E  + ID+ K           +  F+        F      +W D ++    +  V
Sbjct: 29  ACDTE-VADIDVKKESP---VGHGKLTCFSIYCGVNVDFGGGKSRVWVDLLNGGPGILDV 84

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-----LPSALKA 111
            +   EN ++  + HN  F++ +L     +      +  T+ LAR        L  +L+A
Sbjct: 85  FRPYFENAEIKKIWHNYSFDKHILGNY-GIK-AAGFYADTMHLARLWDSARGGLGYSLEA 142

Query: 112 VGEALKLSSQ-----KMEEGKELIARFCKGETHECLYDRNKPNHREA------WRLFGEY 160
           +    K+             K+L A     +       +  P   E          +  Y
Sbjct: 143 LTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYY 202

Query: 161 CKGDVTVTREIFKRLEPLS-------------------SKEQELW-YLDQTINDRGYCVD 200
              D   T  ++  L+                            +  +   +   G  VD
Sbjct: 203 SAHDSVCTWHLWSSLKKKLLKASWYMEGDKRGNMYQFYELYWRHFGDVLVRMEAEGMRVD 262

Query: 201 VALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
                 + ++   ++       +          +  +     +++  LF   G       
Sbjct: 263 TVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAMYMNVCSDVQIRQILF---GGTSNKKD 319

Query: 256 ET 257
            +
Sbjct: 320 PS 321


>gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567]
 gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567]
          Length = 955

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 96/707 (13%), Positives = 193/707 (27%), Gaps = 177/707 (25%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYF 75
           TK  I    E+  +               +  +    +     E + +  +  +  +   
Sbjct: 371 TKTKIRAAEENPVLRGI-ILTSKESSLWINLTNISEDLASAFAEWVSDPQMRKIVMDLKN 429

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGL----PSAL-----KAVGE-ALKLSSQKMEE 125
           +R  L   +   +         + +   G        L     + + E  L +  Q+  E
Sbjct: 430 QRK-LLREYGYKLD-GAIEDPSLSSYMCGYIAAANRRLFAERIEDLAEKYLWIPQQEFSE 487

Query: 126 --------------GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                         G+E +  F +         R      +       Y   D+ +   +
Sbjct: 488 LVFPEEALSLFEMPGEENLRYFTQVSRVIHELARILHFEMQEQGQLKIY--EDIELPL-L 544

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +               +   +   G  V  AL + LN       +  +++ + L  G V+
Sbjct: 545 Y---------------VLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAKVLIGGDVN 589

Query: 232 ----SSRCLEKLKTWLFLETGLHLEDLTET-------TCQRVLSSNKKLTPQAIQV--FN 278
               +   +++L+T LF   GL      ++       +   +L+     +  A  +    
Sbjct: 590 GEPLNLASVKQLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDGAQFLIALQ 649

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
                 +     +  L +A  +DGR+  T Q   A+ TGR S      QN+P  +     
Sbjct: 650 AYRDNIKLKQT-VEGLQKAAVTDGRVHTTFQQN-AASTGRLSSTAPNLQNIPIRTDEGRR 707

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-------KKLVVADLAGIEARVLAW 391
                                    +R   I +         + L+ AD + IE R++  
Sbjct: 708 -------------------------IRGAFIVAPKVLDGVEYEGLLTADYSQIEMRIMVH 742

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +A ++  ++A+  GEDL+    +  F VAP +VT   RA  K M   L Y        + 
Sbjct: 743 LAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYG-----LSRF 797

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                LN+++        +  + +     F R + +        +   G          R
Sbjct: 798 GLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGR---------R 848

Query: 512 QKHSRV----SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           +    +            +A       G A    K   + +                 R 
Sbjct: 849 RSLPDLDSPNRTRREAAERAALNAPIQGTAADIIKIAMINIH----------------RR 892

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
           L    +                                        ++            
Sbjct: 893 LQEEKLKT------------------------------------RMLLQVHDE------- 909

Query: 628 VHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRY 673
               I+ E    +   A  +    M+        +PL  +    K +
Sbjct: 910 ----IILEVAVGEREAAQRILVEEMSEAIE--LKVPLDVQVGWGKSW 950


>gi|222616936|gb|EEE53068.1| hypothetical protein OsJ_35810 [Oryza sativa Japonica Group]
          Length = 2044

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 86/734 (11%), Positives = 173/734 (23%), Gaps = 217/734 (29%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ------- 55
                D        +             ++  A  +++ PV   +   D +M         
Sbjct: 1407 EFSFDLH-YVKKSIKSSSTY-----FDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIEM 1460

Query: 56   ---------VLKEALENTDVTIVAHNSYFERTVLKA-----------CFNLDI-PIHRWI 94
                      + E +    V  +  N  F+   LK              +  +      +
Sbjct: 1461 WDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKYPCVSCQRLSRLHLDYKMLKNVEVL 1520

Query: 95   CTLVLARS----NGLPSALK--AVGEALKLSSQKME--EGKELIARFCKGETHECLYDRN 146
              L           + S L    V   L    +       ++L+ R    E       R+
Sbjct: 1521 DNL---YVFLQPVSVHSGLDICLVAWVLWPDEESKTVPNLEKLVKRRLHNEAAAAAN-RD 1576

Query: 147  KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRG 196
                 +  +     C      TR +   L  L   +            L  +   +   G
Sbjct: 1577 GRWRNQMHKAAHNGCCRRAAQTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWG 1636

Query: 197  YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--- 253
               D+        I+  +  +L++E   L      S      +   L+    L +     
Sbjct: 1637 IGADMDACLRARHIIIRKLKELEKEAYKLAG-KSFSLNATADIADVLYTHLKLPVPKGCG 1695

Query: 254  LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLRGTL 308
              +   +T ++ L   +   P    +  +R  A         + +  +  +   R     
Sbjct: 1696 KGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQG 1755

Query: 309  QF-LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
             +   ++ TGR S      Q                                        
Sbjct: 1756 NWLQTSTATGRLSMEEPNLQ---------------------------------------- 1775

Query: 368  VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTK 426
                E   LV AD + IE R++A  + +   ++   +   D++    +R    A + +  
Sbjct: 1776 ----ENWLLVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAESLICS 1831

Query: 427  DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             +R   K     +                                               
Sbjct: 1832 KERETTKRFIYGIL--------------------------------------------YG 1847

Query: 487  ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                  A +         +  +++++    VS     LH+A       G           
Sbjct: 1848 MGANSLAEQLECSPEDAAQKIQSFKRFFPGVSSW---LHEAVASCRHKGYVETL------ 1898

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                              GR      +    S       +  R+         +I Q  +
Sbjct: 1899 -----------------MGRRRFLSKITAGNSKEK---AKAQRQA------VNSICQGSA 1932

Query: 607  RDILAEGMMNAT--------------------------KAGYDIVLTVHDEIVCETPDTD 640
             DI+   M+                             +    ++L VHDE+V E     
Sbjct: 1933 ADIIKVAMIKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCM 1992

Query: 641  E-FNASMLYHLMTS 653
                  +L  +M +
Sbjct: 1993 VAEAVRLLQTVMEN 2006


>gi|108862506|gb|ABA97168.2| DNA polymerase I family protein, expressed [Oryza sativa Japonica
            Group]
          Length = 2065

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 86/734 (11%), Positives = 173/734 (23%), Gaps = 217/734 (29%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ------- 55
                D        +             ++  A  +++ PV   +   D +M         
Sbjct: 1428 EFSFDLH-YVKKSIKSSSTY-----FDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIEM 1481

Query: 56   ---------VLKEALENTDVTIVAHNSYFERTVLKA-----------CFNLDI-PIHRWI 94
                      + E +    V  +  N  F+   LK              +  +      +
Sbjct: 1482 WDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKYPCVSCQRLSRLHLDYKMLKNVEVL 1541

Query: 95   CTLVLARS----NGLPSALK--AVGEALKLSSQKME--EGKELIARFCKGETHECLYDRN 146
              L           + S L    V   L    +       ++L+ R    E       R+
Sbjct: 1542 DNL---YVFLQPVSVHSGLDICLVAWVLWPDEESKTVPNLEKLVKRRLHNEAAAAAN-RD 1597

Query: 147  KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRG 196
                 +  +     C      TR +   L  L   +            L  +   +   G
Sbjct: 1598 GRWRNQMHKAAHNGCCRRAAQTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWG 1657

Query: 197  YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--- 253
               D+        I+  +  +L++E   L      S      +   L+    L +     
Sbjct: 1658 IGADMDACLRARHIIIRKLKELEKEAYKLAG-KSFSLNATADIADVLYTHLKLPVPKGCG 1716

Query: 254  LTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLRGTL 308
              +   +T ++ L   +   P    +  +R  A         + +  +  +   R     
Sbjct: 1717 KGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQG 1776

Query: 309  QF-LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
             +   ++ TGR S      Q                                        
Sbjct: 1777 NWLQTSTATGRLSMEEPNLQ---------------------------------------- 1796

Query: 368  VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTK 426
                E   LV AD + IE R++A  + +   ++   +   D++    +R    A + +  
Sbjct: 1797 ----ENWLLVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAESLICS 1852

Query: 427  DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             +R   K     +                                               
Sbjct: 1853 KERETTKRFIYGIL--------------------------------------------YG 1868

Query: 487  ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                  A +         +  +++++    VS     LH+A       G           
Sbjct: 1869 MGANSLAEQLECSPEDAAQKIQSFKRFFPGVSSW---LHEAVASCRHKGYVETL------ 1919

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                              GR      +    S       +  R+         +I Q  +
Sbjct: 1920 -----------------MGRRRFLSKITAGNSKEK---AKAQRQA------VNSICQGSA 1953

Query: 607  RDILAEGMMNAT--------------------------KAGYDIVLTVHDEIVCETPDTD 640
             DI+   M+                             +    ++L VHDE+V E     
Sbjct: 1954 ADIIKVAMIKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCM 2013

Query: 641  E-FNASMLYHLMTS 653
                  +L  +M +
Sbjct: 2014 VAEAVRLLQTVMEN 2027


>gi|118083459|ref|XP_416549.2| PREDICTED: similar to DNA polymerase theta [Gallus gallus]
          Length = 2620

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 103/745 (13%), Positives = 202/745 (27%), Gaps = 142/745 (19%)

Query: 23   KYAEDVCVILFAFGFDDHPVELW------------------DCVHDPVMPQVLKEA---L 61
            ++ ED  V+  A  +                              +  + + L+     L
Sbjct: 1918 QHCEDTLVVGLAVCWGGKDAYYISLQQMQDQTEICPSLAPPPLDKNLSVTERLRHLQLYL 1977

Query: 62   -ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
             E  + ++V +N       L     + +    +    V        S          + +
Sbjct: 1978 QEKQERSLVMYNFIQHYKTLVMACGISLE-GSFEDPKVACWLLDSGSK---ECTLHNMVT 2033

Query: 121  QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179
              +     L+     G+  + L   +  +H   +R   E       +  ++   L   + 
Sbjct: 2034 NFLPNELPLLEGVGTGQGVQSLGLSSSEDHSGRYRAAIE-SVLIFNIMNQLHSELRKENL 2092

Query: 180  -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                   E    Y    +   G     A   T  Q++  + T+++ +   L      S  
Sbjct: 2093 TDVFSKVEMPNHYCLALLELNGIGFSTAAYETQKQVMQAKLTEIETKAYQLAGHS-FSLT 2151

Query: 235  CLEKLKTWLFLETGLH---------------------------LEDLTETTCQRVLSSNK 267
              + +   LFLE  L                                  +T + VL   K
Sbjct: 2152 SPDDVAEVLFLELKLPQNGDVKVQGNKKTLGYTRRTSIKGNRVRLSKQFSTTKDVLEKLK 2211

Query: 268  KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD---GRLRGTLQFLGASRTGRWSGCVF 324
             L P    +   R   + +    +  L      +   G  R        + TGR S    
Sbjct: 2212 PLHPLPGLILEWRR-INSAISKVVFPLQREKRFNSALGMERIYPVSQTHTATGRVSFAEP 2270

Query: 325  PPQNLPR--------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358
              QN+PR                           S  + E      H     +       
Sbjct: 2271 NIQNVPRDFEIEMPIVVEESPPFRTHVYSCAVSRSLLNFERGLGRKHSSVLPSGVNTWTA 2330

Query: 359  IISDC--------VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              ++         +R   +   G  ++ AD   +E R+LA  + +   ++AF  G D++ 
Sbjct: 2331 DRTERRGIPFFVSMRHAFVPFPGGFILAADYCQLELRILAHFSRDCRLIEAFNKGADVFK 2390

Query: 411  TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            +  A    +    V    R   K +   + Y  GAK+  +      + ++         S
Sbjct: 2391 SIAAEWKMIDSEAVGDSTRQQAKQICYGIIYGIGAKSLGE-----QMGIDDNKAANYIES 2445

Query: 471  APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                +   + F +    N          +G    R   A R  +  +         A  Q
Sbjct: 2446 FKSRYTGIQKFLKETVSNCRRDGFVQTILGR--RRYLPAIRDSNPYIKA------HAERQ 2497

Query: 531  TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
             +       A        V +++    L  +  S   L   +    R      +R+  RE
Sbjct: 2498 AVNTTVQGSAADIVKTATVNIQRRLEALSSVNKSHGHL---ENSFQRDKTGRLSRKRNRE 2554

Query: 591  YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649
                                   M++    G+ I L +HDE++ E  + D    + +   
Sbjct: 2555 -----------------------MLHPISGGFFI-LQLHDELLYEVAEDDVIQVAQIVKH 2590

Query: 650  LMTSNPSWAKGLPLKAEGYESKRYR 674
             M +       + L  +      + 
Sbjct: 2591 EMENAVK--LSVKLNVKVKIGPSWG 2613


>gi|114588750|ref|XP_001165287.1| PREDICTED: DNA polymerase theta isoform 4 [Pan troglodytes]
          Length = 2499

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 96/777 (12%), Positives = 191/777 (24%), Gaps = 215/777 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D+ V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 1804 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1863

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 1864 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1922

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 1923 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1981

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 1982 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2040

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 2041 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2100

Query: 271  PQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            P    +   R   +  A+ K+         +       R+    Q   A+  GR +    
Sbjct: 2101 PLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFIEP 2156

Query: 325  PPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPL 357
              QN+PR                             +  +                 D  
Sbjct: 2157 NIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRG 2216

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
               S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A   
Sbjct: 2217 MPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWK 2276

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             + P  V  D R   K +   + Y  GAK+  +      + +         +S    +  
Sbjct: 2277 MIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTG 2331

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
               F     +N          +G          R+    + +                  
Sbjct: 2332 INQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------ 2364

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                         +  YR     R  +NT               
Sbjct: 2365 -----------------------------NNPYRKAHAERQAINT--------------- 2380

Query: 598  TENIVQAVSRDILAEGMMNATK-------------------------------------- 619
               IVQ  + DI+    +N  K                                      
Sbjct: 2381 ---IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCP 2437

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
              G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2438 IRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2492


>gi|114588754|ref|XP_001165216.1| PREDICTED: DNA polymerase theta isoform 3 [Pan troglodytes]
          Length = 2500

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 96/777 (12%), Positives = 191/777 (24%), Gaps = 215/777 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D+ V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 1805 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1864

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 1865 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1923

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 1924 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1982

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 1983 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2041

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 2042 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2101

Query: 271  PQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            P    +   R   +  A+ K+         +       R+    Q   A+  GR +    
Sbjct: 2102 PLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFIEP 2157

Query: 325  PPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPL 357
              QN+PR                             +  +                 D  
Sbjct: 2158 NIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRG 2217

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
               S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A   
Sbjct: 2218 MPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWK 2277

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             + P  V  D R   K +   + Y  GAK+  +      + +         +S    +  
Sbjct: 2278 MIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTG 2332

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
               F     +N          +G          R+    + +                  
Sbjct: 2333 INQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------ 2365

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                         +  YR     R  +NT               
Sbjct: 2366 -----------------------------NNPYRKAHAERQAINT--------------- 2381

Query: 598  TENIVQAVSRDILAEGMMNATK-------------------------------------- 619
               IVQ  + DI+    +N  K                                      
Sbjct: 2382 ---IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCP 2438

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
              G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2439 IRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2493


>gi|114588756|ref|XP_001165181.1| PREDICTED: DNA polymerase theta isoform 2 [Pan troglodytes]
          Length = 1762

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 96/777 (12%), Positives = 191/777 (24%), Gaps = 215/777 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D+ V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 1067 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1126

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 1127 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1185

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 1186 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1244

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 1245 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 1303

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 1304 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 1363

Query: 271  PQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            P    +   R   +  A+ K+         +       R+    Q   A+  GR +    
Sbjct: 1364 PLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFIEP 1419

Query: 325  PPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPL 357
              QN+PR                             +  +                 D  
Sbjct: 1420 NIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRG 1479

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
               S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A   
Sbjct: 1480 MPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWK 1539

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             + P  V  D R   K +   + Y  GAK+  +      + +         +S    +  
Sbjct: 1540 MIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTG 1594

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
               F     +N          +G          R+    + +                  
Sbjct: 1595 INQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------ 1627

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                         +  YR     R  +NT               
Sbjct: 1628 -----------------------------NNPYRKAHAERQAINT--------------- 1643

Query: 598  TENIVQAVSRDILAEGMMNATK-------------------------------------- 619
               IVQ  + DI+    +N  K                                      
Sbjct: 1644 ---IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCP 1700

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
              G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 1701 IRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 1755


>gi|114588748|ref|XP_516680.2| PREDICTED: DNA polymerase theta isoform 5 [Pan troglodytes]
 gi|332817593|ref|XP_001165150.2| PREDICTED: DNA polymerase theta isoform 1 [Pan troglodytes]
          Length = 2596

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 96/777 (12%), Positives = 191/777 (24%), Gaps = 215/777 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D+ V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 1901 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1960

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 1961 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 2019

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 2020 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 2078

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 2079 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2137

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 2138 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2197

Query: 271  PQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            P    +   R   +  A+ K+         +       R+    Q   A+  GR +    
Sbjct: 2198 PLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFIEP 2253

Query: 325  PPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPL 357
              QN+PR                             +  +                 D  
Sbjct: 2254 NIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRG 2313

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
               S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A   
Sbjct: 2314 MPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWK 2373

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             + P  V  D R   K +   + Y  GAK+  +      + +         +S    +  
Sbjct: 2374 MIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTG 2428

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
               F     +N          +G          R+    + +                  
Sbjct: 2429 INQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------ 2461

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                         +  YR     R  +NT               
Sbjct: 2462 -----------------------------NNPYRKAHAERQAINT--------------- 2477

Query: 598  TENIVQAVSRDILAEGMMNATK-------------------------------------- 619
               IVQ  + DI+    +N  K                                      
Sbjct: 2478 ---IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCP 2534

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
              G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2535 IRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2589


>gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7]
 gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11]
          Length = 237

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 13/237 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L++D ET S  DL K G   YAE     +++  + FD+ PV++WD      MP+ L+
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            A+      ++++ +V  N   F+R V+K C+  ++ +   I T+++A  + LP +L A+
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 GEALKLS--SQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +     K + GK LI RF K         R     H + W  F  Y K D+T  R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           E++K++     S  E  + +LDQ INDRG+ VDVALA +  + V   + +L +E + 
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHKEELQEEAQR 237


>gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13]
          Length = 237

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 13/237 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  L++D ET S  DL K G   YAE     +++  + FD+ PV++WD      MP+ L+
Sbjct: 1   MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60

Query: 59  EALE-----NTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            A+      ++++ +V  N   F+R V+K C+  ++ +   I T+++A  + LP +L A+
Sbjct: 61  RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120

Query: 113 GEALKLS--SQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTR 169
            E L +     K + GK LI RF K         R     H + W  F  Y K D+T  R
Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180

Query: 170 EIFKRLEPL--SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           E++K++     S  E  + +LDQ INDRG+ VDVALA    + V   + +L +E + 
Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQR 237


>gi|291400573|ref|XP_002716687.1| PREDICTED: DNA polymerase theta isoform 2 [Oryctolagus cuniculus]
          Length = 2306

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 99/782 (12%), Positives = 195/782 (24%), Gaps = 225/782 (28%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHN---- 72
             +D+ V+  A  +            +          +P  L   L   D      +    
Sbjct: 1611 CDDILVVGLAVCWGGRDAYYCSLQKEQQHSEISASLVPPSLDPRLTMKDRMWHLQSCLQK 1670

Query: 73   --------SYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGE--- 114
                      ++      +L     + +    +    V        S    L ++     
Sbjct: 1671 ASDKERSVIIYDFIRSYKILLLSCGVSLE-QSFEDPKVACWLLDPDSKEPTLHSIVTSFL 1729

Query: 115  --ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
               L L  + ME G+ + +             R        +    +          +  
Sbjct: 1730 PCELPLLEE-METGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNAL-----LQKE 1783

Query: 173  KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            K  +     E    Y    +   G     A + +   I+  +   ++ +   L      S
Sbjct: 1784 KLQDIFHKVEMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLAGHS-FS 1842

Query: 233  SRCLEKLKTWLFLETGLHLE--------DLT--------------E-----TTCQRVLSS 265
                + +   LFLE  L             T              +     +T + VL+ 
Sbjct: 1843 FTSSDDIAEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNK 1902

Query: 266  NKKLTPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             K L P    +   R   +  A+ K+         +       R+    Q   A+  GR 
Sbjct: 1903 LKALHPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRI 1958

Query: 320  SGCVFPPQNLPR---------------------------PSRSHEELDQIITHLPTSITS 352
            +      QN+PR                                ++              
Sbjct: 1959 TFIEPNIQNVPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEER 2018

Query: 353  DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
              D     S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TGED++ + 
Sbjct: 2019 ASDRGIPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSI 2078

Query: 413  YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
             A    + P  V  D R   K +   + Y  GAK+  +      + +         +S  
Sbjct: 2079 AAEWRMMEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFK 2133

Query: 473  EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
              +    +F +   +N          +G          R+    + +             
Sbjct: 2134 SRYTGINHFMKETVKNCRRDGFVQTILGR---------RRYLPGIKD------------- 2171

Query: 533  ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                                              +  Y      R  +NTT         
Sbjct: 2172 ----------------------------------NNPYHKAHAERQAINTT--------- 2188

Query: 593  YGGKLTENIVQAVSRDILAEGMMNATK--------------------------------- 619
                     VQ  + DI+    +N  K                                 
Sbjct: 2189 ---------VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGVLQSDKTGLFPKRRLP 2239

Query: 620  ------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672
                   G   +L +HDE++ E  + D    + +    M +       + LK +      
Sbjct: 2240 GVFCPVRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMENAIK--LSVKLKVKVKIGAS 2297

Query: 673  YR 674
            + 
Sbjct: 2298 WG 2299


>gi|291400571|ref|XP_002716686.1| PREDICTED: DNA polymerase theta isoform 1 [Oryctolagus cuniculus]
          Length = 2585

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 99/782 (12%), Positives = 195/782 (24%), Gaps = 225/782 (28%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHN---- 72
             +D+ V+  A  +            +          +P  L   L   D      +    
Sbjct: 1890 CDDILVVGLAVCWGGRDAYYCSLQKEQQHSEISASLVPPSLDPRLTMKDRMWHLQSCLQK 1949

Query: 73   --------SYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGE--- 114
                      ++      +L     + +    +    V        S    L ++     
Sbjct: 1950 ASDKERSVIIYDFIRSYKILLLSCGVSLE-QSFEDPKVACWLLDPDSKEPTLHSIVTSFL 2008

Query: 115  --ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
               L L  + ME G+ + +             R        +    +          +  
Sbjct: 2009 PCELPLLEE-METGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNAL-----LQKE 2062

Query: 173  KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            K  +     E    Y    +   G     A + +   I+  +   ++ +   L      S
Sbjct: 2063 KLQDIFHKVEMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLAGHS-FS 2121

Query: 233  SRCLEKLKTWLFLETGLHLE--------DLT--------------E-----TTCQRVLSS 265
                + +   LFLE  L             T              +     +T + VL+ 
Sbjct: 2122 FTSSDDIAEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNK 2181

Query: 266  NKKLTPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRW 319
             K L P    +   R   +  A+ K+         +       R+    Q   A+  GR 
Sbjct: 2182 LKALHPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRI 2237

Query: 320  SGCVFPPQNLPR---------------------------PSRSHEELDQIITHLPTSITS 352
            +      QN+PR                                ++              
Sbjct: 2238 TFIEPNIQNVPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEER 2297

Query: 353  DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
              D     S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TGED++ + 
Sbjct: 2298 ASDRGIPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSI 2357

Query: 413  YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
             A    + P  V  D R   K +   + Y  GAK+  +      + +         +S  
Sbjct: 2358 AAEWRMMEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFK 2412

Query: 473  EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
              +    +F +   +N          +G          R+    + +             
Sbjct: 2413 SRYTGINHFMKETVKNCRRDGFVQTILGR---------RRYLPGIKD------------- 2450

Query: 533  ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                                              +  Y      R  +NTT         
Sbjct: 2451 ----------------------------------NNPYHKAHAERQAINTT--------- 2467

Query: 593  YGGKLTENIVQAVSRDILAEGMMNATK--------------------------------- 619
                     VQ  + DI+    +N  K                                 
Sbjct: 2468 ---------VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGVLQSDKTGLFPKRRLP 2518

Query: 620  ------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672
                   G   +L +HDE++ E  + D    + +    M +       + LK +      
Sbjct: 2519 GVFCPVRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMENAIK--LSVKLKVKVKIGAS 2576

Query: 673  YR 674
            + 
Sbjct: 2577 WG 2578


>gi|326677806|ref|XP_694437.5| PREDICTED: DNA polymerase theta [Danio rerio]
          Length = 2593

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 95/743 (12%), Positives = 201/743 (27%), Gaps = 163/743 (21%)

Query: 26   EDVCVILFAFGFDDHPVELW------------------DCVHDPVMPQVLKEA---LE-N 63
            ED+ VI  +  +                                 + + LK+    L+ +
Sbjct: 1913 EDLVVIGISVSWGAKDAYFVSLQQELVDTDISASLAPPPLDDTLTVEERLKQIQSCLQKD 1972

Query: 64   TDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLVLARSNGLPSALKAVGEALKLSS 120
            + VT+      ++   L     L   +     +    +        S  + +        
Sbjct: 1973 SSVTVT-----YDFIHLYKILLLACELAVRGTFEDPKIACWLLDSSSKERTL-------- 2019

Query: 121  QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
              M                     ++   + EA +        +  +   +  +L  L  
Sbjct: 2020 HNMVTSFATEDLPMLEGISAGQGVQSLGIYGEASQPGRYRAAIESVLVFRVMTQLNCLLE 2079

Query: 181  KE----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            K+              Y    +   G    +A       ++  + + L+ +   L     
Sbjct: 2080 KDGFLDVFKKVEMPTQYCLALLELNGIGFSIAECEAQKHVMQAKLSALESQAYQLAGHS- 2138

Query: 231  SSSRCLEKLKTWLFLETGLHLE------------------------DLTETTCQRVLSSN 266
             S    E +   LFLE  L                               +T + VL   
Sbjct: 2139 FSLTSPEDVAEVLFLELKLPPNGDLNGLKNKKTLGYTRRAGARIKLSKQFSTTKDVLEKL 2198

Query: 267  KKLTPQAIQVFNNRMRASRSAVLKL-------NTLVEAMNSDGRLRGTLQFLGASRTGRW 319
            K L P    +   R   +     K+             +  D R+    Q   A+  GR 
Sbjct: 2199 KPLHPLPGVILEWRRITNAL--TKVVFPLQREKKWHSHLKMD-RIHPISQSHTAT--GRV 2253

Query: 320  SGCVFPPQNLPRP---------------------------SRSHEELDQIITHLPTSITS 352
            S      QN+P+                            S    ++++++  L      
Sbjct: 2254 SFTEPNIQNVPKDFEIQMPTLIEESQTSQNGGSKMWYISASCKRTKINRLLAPLLKVSDK 2313

Query: 353  DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
             PD     S  +R   +   G  ++  D + +E R+LA ++ ++  L    +G D++ + 
Sbjct: 2314 SPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHVLNSGADVFKSI 2373

Query: 413  YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
             A    V PA V  + R   K +   + Y  GAK+  +      + +          +  
Sbjct: 2374 AAEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKSLGE-----QMGIEENDAACYIETFK 2428

Query: 473  EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
              +   +NF R   +   ++      +G   +R     +  +  +         A  Q +
Sbjct: 2429 SRYNGIQNFLRETVQKCGKNGYVKTLLGR--KRFLPGIKDSNVYIKS------HAERQAV 2480

Query: 533  ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                   A     +  + +++        +P+  S  +  +     + N           
Sbjct: 2481 NTTVQGSAADIVKLATINIQRRIEEAFPGVPT--SHQHPSIRLGGRHRNQFRPL------ 2532

Query: 593  YGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLM 651
                                        G   +L +HDE++ E  + D    + +    M
Sbjct: 2533 ---------------------------RGGYFILQLHDELIYEVAEEDVIQVAQIVKREM 2565

Query: 652  TSNPSWAKGLPLKAEGYESKRYR 674
             S       + L+ +      + 
Sbjct: 2566 ESVVKLY--VKLRVKVKVGPSWG 2586


>gi|157786800|ref|NP_001099348.1| DNA polymerase theta [Rattus norvegicus]
 gi|149060535|gb|EDM11249.1| polymerase (DNA directed), theta (predicted), isoform CRA_a [Rattus
            norvegicus]
          Length = 2547

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 96/774 (12%), Positives = 198/774 (25%), Gaps = 221/774 (28%)

Query: 30   VILFAFGFDDHPVELWDCVHDPVMPQ--------------VLKEALE----------NTD 65
            V+  A  +            +    +               +KE +E          + +
Sbjct: 1859 VVGLAVCWGGKDAYYLSLQKEQKQSEMSPSLAPPPLDATLTVKERMEYLQSCLQKKSDQE 1918

Query: 66   VTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEALKL 118
             ++V     ++      VL     + +    +    V        S    L ++  +   
Sbjct: 1919 RSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSIVTSFLP 1973

Query: 119  SSQKMEEGKEL---IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                + EG E    I         +                        +    +     
Sbjct: 1974 HELALLEGIETGPGIQSLGLNVNTDHSGRYRASVESVLIFNSMNQ----LNSMLQKENLH 2029

Query: 176  EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            +     E    Y    +   G     A   T   I+  +   ++ +   L      S   
Sbjct: 2030 DIFCKVEMPSQYCLALLELNGIGFSTAECETQKHIMQAKLDAIETQAYQLAGHS-FSFTS 2088

Query: 236  LEKLKTWLFLETGLHL--------EDLT------------E-------TTCQRVLSSNKK 268
             + +   LFLE  L             T            +       +T + +L+  K 
Sbjct: 2089 ADDIAQVLFLELKLPPNGEMKTQGGRKTLGSTRRGTESDRKLRLGRRFSTSKDILNKLKD 2148

Query: 269  LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFP 325
            L P    +   R   S +    +  L    + +  LR    +  +   + TGR +     
Sbjct: 2149 LHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPFLRMERIYPVSQSHTATGRITFTEPN 2207

Query: 326  PQNLPRP-------------------------SRSHEELDQIITHLPTSITSDPDPLQII 360
             QN+PR                          +R ++++  +     T +    D     
Sbjct: 2208 IQNVPRDFEIKMPTLVRESPPSQASGKGQLAMARQNQKVYGLHPGQRTVLEKTSDRGVPF 2267

Query: 361  SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
            S  +R   +   G  ++ AD + +E R+LA ++ +   ++   +G D++ +  A    + 
Sbjct: 2268 SVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNSGADVFRSIAAEWKMIE 2327

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            P  V  + R   K +   + Y  GAK+  +      + +         +S    ++   +
Sbjct: 2328 PDAVGDNLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYKGINH 2382

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
            F R   +N       +  +G          R+    + +                     
Sbjct: 2383 FMRDTVKNCRRDGFVETILGR---------RRYLPGIKD--------------------- 2412

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                                      +  Y      R  +NTT                 
Sbjct: 2413 --------------------------NNPYHKAHAERQAINTT----------------- 2429

Query: 601  IVQAVSRDILAEGMMNATK---------------------------------------AG 621
             VQ  + DI+    +N  K                                        G
Sbjct: 2430 -VQGSAADIVKVATVNIQKQLETFHPTFKSHGHRESMLQSDRAGLLPKRKVKGMFCPMRG 2488

Query: 622  YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
               +L +HDE++ E  + D    + +    M         + LK +      + 
Sbjct: 2489 GFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2540


>gi|194222793|ref|XP_001502374.2| PREDICTED: similar to polymerase (DNA directed), theta [Equus
            caballus]
          Length = 2701

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 100/793 (12%), Positives = 196/793 (24%), Gaps = 223/793 (28%)

Query: 13   PIDLTKCG-ICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALEN 63
               + + G   K  +D+ V+  A  +       +    +          +P  L   L  
Sbjct: 1994 DPPIREDGFPVKGCDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPRLTM 2053

Query: 64   TDVTIV----AHNSY----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGL 105
             D                       ++      +L     + +    +    V       
Sbjct: 2054 KDRMWHLRSCFQ--KESDKERSVIVYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDP 2110

Query: 106  PSA---LKAVGEALKLSSQKMEEGKEL---IARFCKGETHECLYDRNKPNHREAWRLFGE 159
             S    L ++  +       + EG E    I         E                   
Sbjct: 2111 DSKEPTLHSIVTSFLPHELPLLEGIETGQGIQSLGLNVDTEHSGRYRASVESILIFNSMN 2170

Query: 160  YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
                 +    +     +     E    Y    +   G     A   +   I+  +   ++
Sbjct: 2171 Q----LNSLLKKENLQDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIE 2226

Query: 220  QELESLTYGLVSSSRCLEKLKTWLFLETGLHL--------EDLT---------------- 255
             +   L      S    + +   LFLE  L             T                
Sbjct: 2227 TQAYQLAGHS-FSFTSSDDIAEVLFLELKLPPNGEMKNQGGKKTLGSTRRGNDNGRKLRL 2285

Query: 256  -E--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGT 307
             +  +T + +L+  K L P    +   R   + +    +  L  A   +      R+   
Sbjct: 2286 GKQFSTSKDILNKLKALHPLPGLILEWRRITN-AITKVVFPLQRAKRLNPFLGMERIYPV 2344

Query: 308  LQFLGASRTGRWSGCVFPPQNLPRPSR--------------------------SHEELDQ 341
             Q   A+  GR +      QN+PR                             + +    
Sbjct: 2345 SQSHTAT--GRITFTEPNIQNVPRDFEIKMPTLVGESPPSQALGKGLLPMGRGNEKSHGL 2402

Query: 342  IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
             + H   +     D     S  +R   +   G  ++ AD + +E R+LA ++ ++  ++ 
Sbjct: 2403 NLGHQAQTEERASDRGMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQV 2462

Query: 402  FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
              TG D++ +  A    + P  V  D R   K +   + Y  GAK+  +      + +  
Sbjct: 2463 LNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGILYGMGAKSLGE-----QMGIKE 2517

Query: 462  FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                   +S   ++    +F R   +N          +G          R+    + +  
Sbjct: 2518 NDAACYIDSFKSKYTGINHFMRETVKNCKRDGFVQTILGR---------RRYLPGIKD-- 2566

Query: 522  NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                                                         +  Y      R  +N
Sbjct: 2567 ---------------------------------------------NNPYHKAHAERQAIN 2581

Query: 582  TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---------------------- 619
            TT                  VQ  + DI+    +N  K                      
Sbjct: 2582 TT------------------VQGSAADIVKIATVNIQKQLETFHSSFKSHGHREGMLQSD 2623

Query: 620  -----------------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGL 661
                              G   +L +HDE++ E  + D    + +    M S       +
Sbjct: 2624 RTGLLPKRKLQGMFSPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAIK--LSV 2681

Query: 662  PLKAEGYESKRYR 674
             LK +      + 
Sbjct: 2682 KLKVKVKIGASWG 2694


>gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 1003

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 105/709 (14%), Positives = 194/709 (27%), Gaps = 167/709 (23%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSYF 75
           TK  I    E+  ++              D    DP +   L   L +     +      
Sbjct: 407 TKTKIRAAEENPELLGVLL-TSKSTSLWIDTRTIDPELDAALAAWLSDEAARKIV----M 461

Query: 76  ERTV---LKACFNLDIPIHRWICTLVLARSNGL---------PSALKAVGEALK------ 117
           +  V   L   +  ++         + +   G             ++ + E         
Sbjct: 462 DLKVQRKLLRAYGYELA-GAVEDPALSSYMCGFIPTATRKLFSERMEDLAERYLWIPKEP 520

Query: 118 -----LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREI 171
                   ++ E    L +   + E  + L                  Y         E 
Sbjct: 521 YAQLVFQPEEDEAEPSLFSLPGEAEPVDNLRYFTQISRIIHELARLLHY-------EMEE 573

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV- 230
             +L+     E  L Y+   +   G  V  AL   L+        +  +   ++  G V 
Sbjct: 574 HGQLKVYEEIELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQESARAIIGGEVA 633

Query: 231 -------SSSRCLEKLKTWLFLETGLHLEDLTET---TCQR-VLSSNKKLTPQ------A 273
                   +   +++L+T LF   GL      ++   T    V     K++P+       
Sbjct: 634 TEDGEEPLNLASVKQLQTVLFETLGLPHTRKIKSGYSTDAESVTELLSKISPESDGAAFL 693

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +   R     +    +  L +A   DGR+  T Q  GA+ TGR S      QN+P  +
Sbjct: 694 GALAAYRDNIKLAQT--VEGLQKAATEDGRVHTTFQQ-GAASTGRLSSTAPNLQNIPIRT 750

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG-------KKLVVADLAGIEA 386
                                         +R   I +         + L+ AD + IE 
Sbjct: 751 EEGRR-------------------------IRGAFIVAPEPIDGVEYEGLLTADYSQIEM 785

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++  +A ++  + A+E GEDL+    +  F VAP  VT +QR+  K M   L Y     
Sbjct: 786 RIMVHLAADEKLIAAYEAGEDLHRYVGSEVFGVAPEDVTPEQRSKVKAMSYGLAYG---- 841

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +      LN+++        +  + +     F R + +   +    +   G      
Sbjct: 842 -LSRFGLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVLKQAHQDGYTETIFGRRRVLP 900

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                 +  R         +A       G A    K   + +                 R
Sbjct: 901 DLDSPNRVRR-----EAAERAALNAPIQGTAADIIKIAMINIH----------------R 939

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
            L    +                                        ++        I+L
Sbjct: 940 RLREEGLKT------------------------------------RMLLQVHDE---IIL 960

Query: 627 TVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674
                   E    +   A  +    M+   S    +PL  +    K ++
Sbjct: 961 --------EVATGEREAAERVLVEEMSGAAS--LRVPLDVQVGWGKSWQ 999


>gi|307199388|gb|EFN80013.1| DNA polymerase theta [Harpegnathos saltator]
          Length = 1937

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/676 (12%), Positives = 186/676 (27%), Gaps = 111/676 (16%)

Query: 10   TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-------PQVLKEALE 62
            T     L K     +     +   A  ++ +        +             +LKE L 
Sbjct: 1339 TEKKRKLKKSVNYIHGRK-EIRGAAISWESNIAYYISFSNTQDAKISTKEQITLLKELLS 1397

Query: 63   NTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLA--RSNGLPSALKAVGEAL--- 116
            +  + +       +   +L  C  +     R++  ++     +N        +       
Sbjct: 1398 DAALYVKCFAIK-DTYKLLYRCCAISAK-CRFLDPVIAHWLYTNDFEGNFSELVTQYFPQ 1455

Query: 117  -KLSSQKMEE----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-TRE 170
                 ++       G  +  +           +     H              V + T  
Sbjct: 1456 GNFIMKRTNSCCNVGPGMDVQNSLPGEFRSAAEAVLTWHMTDSITSKLEELNPVLLHTFR 1515

Query: 171  IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                       E  +  +   +   G  V++        ++  E   L+     L     
Sbjct: 1516 ---------DIEMRIATILACMELSGIGVNLKALQETLSVILSEMQSLETRAYDLAGRK- 1565

Query: 231  SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +    +++   L L     +     +T + VL           ++  +  + + +    
Sbjct: 1566 FNLSSSKEVGQVLGLYKDKKV-----STSKAVLEKCDNP---ISRLVISWRKLNATKTKI 1617

Query: 291  LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            +  L+     D R+ G       + TGR S      QN+P+                   
Sbjct: 1618 VYPLLNLSQEDSRIHGNCI--TCTVTGRVSMHEPNLQNVPK------------------- 1656

Query: 351  TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                     +   VR   + + G  ++ AD   +E R+L   + +    +  +   D++ 
Sbjct: 1657 -DFHFEDNNLLVSVRRSFVPALGNVMLSADYCQLELRLLTHFSQDSVLCEIMKQQGDIFK 1715

Query: 411  TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            +  A+  NV   +VT + R   K +   + Y  G K+  +      L ++         S
Sbjct: 1716 SIAAKWNNVIEEEVTNEMRQRTKQLCYGMIYGMGVKSLAE-----NLCISETEAQHFLES 1770

Query: 471  APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                +     +     E    +      +G          R++   +    +      E+
Sbjct: 1771 FMNAYPGIYKWLDDTLEKAHHNGYVTTLLGR---------RRQLPDLRSTKSSTRAQAER 1821

Query: 531  TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
               N K                      ++++       + D           TR+L R 
Sbjct: 1822 QAVNTKV----------QGSAADIVKKAMIIIEEKMRHSFPD-SVIVFPETQGTRKLRRN 1870

Query: 591  YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYH 649
                           SRD+L        + G  +VL +HDE++ E    D    + ++  
Sbjct: 1871 ---------------SRDML--------QRGGYLVLQLHDELLYEVNSADLKEVAIIIKE 1907

Query: 650  LMTSNPSWAKGLPLKA 665
             M         LP+K 
Sbjct: 1908 SMEDVCQLTVPLPVKV 1923


>gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 384

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 142/384 (36%), Positives = 179/384 (46%), Gaps = 53/384 (13%)

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            +               D + + S  +RSC+IA   KKLVVADL+ IE RVLAW+AGE  
Sbjct: 7   AVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETP 66

Query: 398 KLKAFETGEDL----------------------------------------YVTTYARSF 417
           KL AF   +                                          Y   YA SF
Sbjct: 67  KLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSF 126

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            +AP  VTK+QR IGKV ELALGY GG  AF   A+   ++L   A        P   ++
Sbjct: 127 GIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL--PPLLLQE 184

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
           A    +W + N             AC+  K+AWR  H  ++  W  L  A    I + + 
Sbjct: 185 AVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPET 244

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREY 591
                      + M+  +  L + LPSGR L Y     D     SY+ T   TR+ TR  
Sbjct: 245 A-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRIT 299

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
           TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM
Sbjct: 300 TYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALM 359

Query: 652 TSNPSWAKGLPLKAEGYESKRYRK 675
            + P WA+GLPL AEG+++ RYRK
Sbjct: 360 ATPPPWAQGLPLAAEGFQTHRYRK 383


>gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
 gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213]
          Length = 951

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/630 (14%), Positives = 184/630 (29%), Gaps = 141/630 (22%)

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           + H    E   L +   L + +     T +             + +A +           
Sbjct: 435 IVHGYK-ELLHLLSAAGLGMAL-PMFDTKLGGYLAQPDFHADNLNQAAEHFLD------- 485

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY- 187
            I      +  + + D +  +  E      E    D+ V RE+   L P+  + ++ W  
Sbjct: 486 -IHVVDAEQPAQGVLDFDDEHTEEDLN---ERRVHDLAVIRELAVTLGPVIDERRQYWLM 541

Query: 188 ---------LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
                    +   +   G  +D +    +      +  +  QE+     G   + +  ++
Sbjct: 542 RAIELPVSRVLHGMEQSGAKIDRSRLTDMRDRFAAD-ARQAQEMAWQYAGGEINLQSPKQ 600

Query: 239 LKTWLFLETGLHLEDLTE----TTCQRVLSSN-------KKLTPQAIQVFNNRMRASRSA 287
           L+  LF++ GL     T+    TT    L +        ++       +  +R       
Sbjct: 601 LQKVLFVDMGLKPTKRTKNGSYTTNAAALQNLYIHSVDNEQANGFLGALLRHRETNKLKQ 660

Query: 288 VLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
           +  + TL++A N  D R+  T +   A+ TGR S      QN+P  +    E        
Sbjct: 661 I--VQTLIDATNKADERIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAVGRE-------- 709

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                            +RS  +  EG + L+  D + +E R++A ++G++  ++AF +G
Sbjct: 710 -----------------IRSVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSG 752

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            D +    +  + V   Q+T DQR+  K M   L Y               LN+      
Sbjct: 753 ADFHKYVASMVYGVPVDQITGDQRSHVKAMSYGLAYG-----LSTYGLAQQLNIAQREAE 807

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
              N   + +    ++   +     E    +   G          R+    +        
Sbjct: 808 ALKNRYFDTFGKVHDYLESLVATAREKGYTETIFGR---------RRYFPALRSTNRMAR 858

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
            A E+                                     L     G+    +     
Sbjct: 859 DAAERAA-----------------------------------LNAPIQGSAADIMKIAMI 883

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA- 644
           +  +     G  +  I+Q                            +V E    +     
Sbjct: 884 RAGQALDEAGVKSRIILQ-------------IHDE-----------LVVEIAPGESEQVT 919

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            ++ + M      A  +PL         ++
Sbjct: 920 ELIRNAMEHAVDLA--VPLDVSCGIGSDWQ 947


>gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 808

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/410 (16%), Positives = 120/410 (29%), Gaps = 96/410 (23%)

Query: 277 FNNRMRASRSAVLKLNTL----VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
                  +      +  L    ++++ SDGR+  +L     + TGR S      QN P  
Sbjct: 478 LCEVASINTLLSNFIEPLQGNDIKSV-SDGRVHCSLNIN--TETGRLSARRPSLQNQP-- 532

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                   L+     +R   +A+ GK LVVAD   +E R+LA +
Sbjct: 533 -----------------------ALEKDRYKIRQAFVAAPGKALVVADYGQLELRLLAHL 569

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A  +    AF  G D +  T    +      V KD                     + + 
Sbjct: 570 ADCKSMKAAFIAGGDFHSRTAMNMYPHVREAVEKD---------------------RVLL 608

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
              GL       L     +        NF     +     A +        +     W  
Sbjct: 609 EWEGLEKPPVPLLKDMFGSERRKAKMLNFSIAYGKTAMGLAKDWNVKLDEAKATVDLWYS 668

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
               V     E  Q   +T                          L +    GR+    D
Sbjct: 669 DRPEVLAWQKERKQEAHET--------------------------LRVHTLLGRARHLPD 702

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVL 626
           + ++ S L +    + R             Q  + D+    M+         + G+ ++L
Sbjct: 703 INSSNSLLRSH---MERAAINTPVQ-----QGSAADVAMCAMLEINQNARLRELGWKLLL 754

Query: 627 TVHDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
            VHDE++ E P ++ E    ++   M           + L  +G  ++ +
Sbjct: 755 QVHDEVILEGPLESAEEAKELVIKSMMYPFNGENILDVELVVDGDYAENW 804



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 83/301 (27%), Gaps = 67/301 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFA--------FGFDDHPVELWDCVHDPVMPQV 56
             D E  + ID+ K           +  F+        FG+  + + +        + +V
Sbjct: 41  ACDTE-VAGIDVKKESP---VGHGQITCFSIYCGPGADFGYGKNRLWVDVLDGGDDVLRV 96

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-------PSAL 109
            K   E+  +  V HN  F++ +L     +  P   +  T+ LAR N           AL
Sbjct: 97  FKRYFEDPSIQKVWHNYSFDKHILSRH-GIH-PQGFYADTMHLARLNDSARRGSKGGYAL 154

Query: 110 KAVGEALKLSSQ-------------------KMEEGKELIARFCKGETHECLYDRNKPNH 150
           + +    K+                      K   GK  + +       + +   ++   
Sbjct: 155 EVLSADRKVMDYCSKNFTEEDGSVFVGKKSMKELFGKAKLKKDGTPGKIKVVPPVDELQR 214

Query: 151 REAW-RLFGEYCKGDVTVTREIFKRLEPLS---------------------SKEQELWYL 188
            E     +  Y   D   T  +F  L+                           +    +
Sbjct: 215 DEELRDAWIHYSTLDAVCTWRLFVSLQHKLSNTPWSVAELRHKGSMYDFYEKYWRPFGEV 274

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV-----SSSRCLEKLKTWL 243
              +   G  VD     T+ ++   ++                     +     +++ +L
Sbjct: 275 LVQMEAYGMLVDYDHLATVEKLARAQQKISVSRFRKWAARYCPNAARMNVGSDAQIRQFL 334

Query: 244 F 244
           F
Sbjct: 335 F 335


>gi|126332210|ref|XP_001374207.1| PREDICTED: similar to polymerase (DNA directed) nu, [Monodelphis
           domestica]
          Length = 816

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/576 (14%), Positives = 167/576 (28%), Gaps = 128/576 (22%)

Query: 65  DVTIVAHNSY-FERTVLKACFNL----DIPIHRWICTLVLARSNGLP---SALKAVGEAL 116
             T++  N+  F +TVL+   +      +     +   + A         S+ + +    
Sbjct: 316 KHTVICFNAKEFVKTVLQVYGSYCHWKHVVDFVVLDPRIAAWLLDPSDTISSFEDLVRKY 375

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              S  M           K          N     +   L   Y    V +  ++     
Sbjct: 376 FEESVTM-----------KVNNTNGGSSHNMMFSNQRKNLRILYRIT-VDLCSKLKVCGL 423

Query: 177 PLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  EL    +   +    + VD       ++++     +L+QE   +  G      
Sbjct: 424 WQLFYTLELPLIPILAVMETHKFQVDKEEMKRTSKLLGCRLKELEQEAH-VAAGEQFLVT 482

Query: 235 CLEKLKTWLFLETGLHL--EDLT---------ETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
              +L+  LF +  LHL  +  T          +T + VL++ + L P    +   R   
Sbjct: 483 SNNQLREVLFDKLKLHLLCKSKTLPKTELQKHPSTSEAVLNALQDLHPLPKIILEYRQ-I 541

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
            +     ++ L+  M   G +  T    G + +GR S      Q + +      +     
Sbjct: 542 HKVKSTFVDGLLSCMRK-GFIAPTWNQTG-TVSGRLSAKKPNIQGISKHPIQITKHQYEQ 599

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                  T  P          R+  I+S+G   + AD + IE R+LA ++ +   LK F+
Sbjct: 600 GKEDEKTTVSP----------RTMFISSKGYTFLAADFSQIELRILAHLSCDPELLKLFQ 649

Query: 404 TGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
             E  D++++  ++   +   QVT  +R   K +  ++                G     
Sbjct: 650 EPESLDVFMSLTSQWKGIPLEQVTHVEREQTKRIVYSVV--------------YGAGKER 695

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
            A                                         +  +++ QK+ ++ +  
Sbjct: 696 LAAC------------------------------LGVTSLQSSQFIESFLQKYKKIHDF- 724

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
               +   Q    G                             GR     ++      L 
Sbjct: 725 --TQETIMQCHHKGYVTSI-----------------------MGRRRPLPNINAKDYRLR 759

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
           T   Q  R+          +VQ  + D+    M+  
Sbjct: 760 T---QAERQA------VNFVVQGSAADLCKIAMIRI 786


>gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 635

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 85/273 (31%), Gaps = 48/273 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + +D ET S   ++            ++  +F  ++                  +   
Sbjct: 354 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SAL 109
                +K  LEN ++  +  N  F+ ++      +++       T++L+ +        +
Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVE-FDTMLLSYTLNSTGRHNM 461

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             + +           G E IA     E+           ++       EY   D  VT 
Sbjct: 462 DDLAKRY--------LGHETIAF----ESLAGKGKSQLTFNQIPLEQATEYAAEDADVTM 509

Query: 170 EIFKRLEPLSS-----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           ++ + L                 E  L ++   +   G  +D       +  +    T L
Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +++  +L      +    ++L+  LF + GL +
Sbjct: 570 EKQAYALAGQP-FNLASTKQLQEILFDKLGLPV 601


>gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila]
 gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210]
          Length = 988

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/459 (13%), Positives = 133/459 (28%), Gaps = 102/459 (22%)

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           +  L      +++   ++  +   +    +        + ++                  
Sbjct: 621 IGKLLKNNQLAAKVYNQIGEYYKQKGDEEMGKRASHAIESLIQL---------------K 665

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           +        +  L E  + DGR+  +L     + TGR S       N P   +   +   
Sbjct: 666 QVETLLTTFIIPLRELADKDGRIHCSLNMN--TETGRISARKPNLMNQPSHDKDVYK--- 720

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +RS   A +G KL+VAD   +E R+LA M   +  ++A
Sbjct: 721 ----------------------IRSAFQAGKGNKLIVADYGQLELRILAHMTNCKAMIEA 758

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
           F+ G D +  T    +     ++        +  EL L +                    
Sbjct: 759 FKMGGDFHSRTAMGMYPKLKEEI--------EKGELLLEWDKSQG------------EPP 798

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
              L    S+  +     NF     ++    + +        +    AW      V E  
Sbjct: 799 APLLKDKYSSERKKAKMMNFSIAYGKSAHGFSKDWNCSMKEAQEALDAWFADRKEVKEWQ 858

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                  +  +E+G                             GR      + +++S   
Sbjct: 859 ---ENTKKIALEHGYTQTM-----------------------MGRYRNLERLTHSKSA-R 891

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCE 635
              +   R            +Q  + D++   M+         + GY ++L +HDE++ E
Sbjct: 892 HLVQHGLRASINTP------IQGGAADLVIAAMVKVSQDPKLNELGYKLLLQIHDELILE 945

Query: 636 TPDT-DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
            P+   +   + +  +M +       L ++ +      +
Sbjct: 946 GPEEHAQEALARVIEIMENPLDTPLLLKMEVDAKVGNNW 984



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 80/298 (26%), Gaps = 28/298 (9%)

Query: 7   DFET-RSPIDLTK-CGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALEN 63
           D ET      L    G  K             F + P    D    +  + Q+ KE LE+
Sbjct: 97  DTETIDVDAKLESPIGKGKIICASAFCGIDVDFGNGPRLFIDNFAQNTDLIQIFKEYLED 156

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           +    + HN  F+R +      +++       T+ LAR        K    A  ++    
Sbjct: 157 SRYKKIWHNYGFDRHIFYNH-GINVQGFG-GDTMHLARLADPSRGPKEYSLA-NVTKHYE 213

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           EE K L  +            ++   + +  +      +    +  EI ++ +      +
Sbjct: 214 EEIKYLKRQLIND------LRKSIQINTQELQSVLAALQKGADLPHEIIQKFKLHRFNTR 267

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQ-IVDVERTKLDQELE---------SLTYGLVSSS 233
           +          + + +    A    +  ++       ++L               +   +
Sbjct: 268 DEQIFFINDQIQKWLIKKQPADQYEKYYLNTNLKTNMKQLFGKKKYLKDGKEGKTIEFPN 327

Query: 234 RCLEKLKTWLFLE------TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
                    L  +          +        +  L S          + +   +  +
Sbjct: 328 TIRMHTDPELLEKWVHYSCLDAEITFFVFQVLKDELKSLSTNFEDMKNMLDLYNKYWK 385


>gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e]
 gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e]
          Length = 306

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 124/292 (42%), Gaps = 45/292 (15%)

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ-- 486
             +    EL LGY+GG  AF   A   GL+L   A  +        W        W +  
Sbjct: 15  FLVAHNCELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQ 74

Query: 487 ----------ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG- 535
                     ++     I D  +   C+ +K+ WR+ H      W +L       + N  
Sbjct: 75  EAKRPPHPGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPG 134

Query: 536 --------------KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS--- 578
                         +AI   +  +      K     L + LPSGR L Y  +G + +   
Sbjct: 135 REFWAGAHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKET 194

Query: 579 ---------------YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
                            N  TRQ T  YT+GGK  ENIVQA+ RD+LA  M+N    GY 
Sbjct: 195 DEDGRINTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYP 254

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           IVL+VHDE+VCETPDT ++  + L  LM + P WA G PL AEG E KRY K
Sbjct: 255 IVLSVHDELVCETPDTSDYTVAELEKLMCALPEWADGFPLVAEGAELKRYAK 306


>gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638]
 gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638]
 gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68]
          Length = 231

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 11/234 (4%)

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
           AF   A    L+L+  A+    N   +   +A+++     +    + + +     AC+ +
Sbjct: 3   AFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSERVFI-ACDSL 61

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           K+ WR+ H    + W EL +     I   +  +         + +++D   L + LPSGR
Sbjct: 62  KRLWRRAHPATCDFWYELERTVRTAIATPQKTL-----YCGYLKIRRDGAWLRIQLPSGR 116

Query: 567 SLVYRDV---GNNRSYL--NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
           ++ Y        N +Y+  N+ +R+  R  TYGGKL EN+ QA +RD+LA  M     AG
Sbjct: 117 AVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAG 176

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           Y IVLTVHDEI+ E PD+ +++A  +  L+ + P WA  +PL A G+ES RYRK
Sbjct: 177 YSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRYRK 230


>gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021]
 gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21]
          Length = 314

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 110/411 (26%), Gaps = 103/411 (25%)

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                      ++       S+      + L + +NS      T      + TGR S   
Sbjct: 2   EELSYSHELP-KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSD 60

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+P  +                              +R   IA EG  +V AD + 
Sbjct: 61  PNLQNIPIRNEEGRR-------------------------IRQAFIAREGYSIVAADYSQ 95

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF  G+D++ +T A  F V+  +VT +QR   K +   L Y  
Sbjct: 96  IELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGM 155

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            A        +  L ++        +   + +   + F   ++         +   G   
Sbjct: 156 SA-----FGLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRL 210

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                       R         +        G A    KR  + +  +            
Sbjct: 211 YLPDINSSNAMRR-----KGAERVAINAPMQGTAADIIKRAMIKIDEVI----------- 254

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD 623
                   D+                         E I+Q                    
Sbjct: 255 ----RHDPDI-------------------------EMIMQ-------------VHDE--- 269

Query: 624 IVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                   +V E   +   F    +   M +       +PL  E    K +
Sbjct: 270 --------LVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 310


>gi|260794541|ref|XP_002592267.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae]
 gi|229277483|gb|EEN48278.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae]
          Length = 595

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/626 (12%), Positives = 175/626 (27%), Gaps = 85/626 (13%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
            V  +   +   L A  ++ +    +    V               +  +       +  
Sbjct: 13  KVF-DLKAQYKALAAGCDITMN-GNFQDPKVADWLLDPD------AKVKRFDEMVKGQFT 64

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----- 182
              +   +G       + +     +           +   T  +  +L  L  ++     
Sbjct: 65  PQESDLLQGLREC-FGEGSLSMTVQNAGSGQTRAALECVFTFHLMVKLSKLLEEQGLSTA 123

Query: 183 -----QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                         +   G   +     T  Q++      L++    L      +    +
Sbjct: 124 FRNVEMPSLVALARLELNGAGFNPEECETQCQVMKDRLRMLEERAHKLAGHT-FALNSTK 182

Query: 238 KLKTWLFLETGLHL---EDLTE------TTC-QRVLSSNKKLTPQAIQ--VFNNRMRASR 285
            +   L+ E  L +              +T  + VL   K   P      V       S 
Sbjct: 183 AVDKVLYEEKKLEINEDPSTNSQPQERLSTSRKGVLEKLKTSHPLHPLPGVILKWKHISN 242

Query: 286 SAVLKLNTLVE--AMNSD---GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               K+  L +    N      R+  T     A+  GR +      Q +P+      E+ 
Sbjct: 243 LLN-KVTPLQKKNVYNPRLNMDRIYSTCNLHTAT--GRVAFHDPNLQFIPK--EFEIEMP 297

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
               +      +  + +     C+R   I  +G  ++ AD + +E R++A ++ +    +
Sbjct: 298 TDTNNEDGPPAAGEETMSKRKVCMRHAFIPFKGGVILAADYSQLEVRIMAHLSKDSKLTQ 357

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           A  +G+D++    ++   VA   V+   R   K +   + Y  G K         G++  
Sbjct: 358 ALNSGQDVFKAIASQWKGVAVEHVSDKLRQQAKQLYYGIIYGMGPKTL---GEKLGVSKE 414

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                    +    +   + + +   +    +                     +      
Sbjct: 415 EGKRR--IETFKSSYTGIQRYRQTTVDQCKRNGYVQTMAERRRYLPDINGEDYYK----- 467

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
            ++  +    T   G A    K+  V +         L    P  R       G + +  
Sbjct: 468 LSQAERQAFNTTIQGSAADLVKKAMVLIDQ------RLQQEFPDTRRSHRH--GESTAAA 519

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
             T ++ +++ +                            G  ++L +HDE++ E  + D
Sbjct: 520 ADTDKRRSQQPSSPP------------------------RGAYLILQLHDELIYEVHEED 555

Query: 641 EFNASMLYHL-MTSNPSWAKGLPLKA 665
           E   + +    M      +  LP+K 
Sbjct: 556 EQKVAQIVKHKMEKAMELSVELPVKV 581


>gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
 gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296]
          Length = 1003

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 101/708 (14%), Positives = 191/708 (26%), Gaps = 165/708 (23%)

Query: 17  TKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYF 75
           TK  I    E+  ++        +     D    DP +   L   L +     +      
Sbjct: 407 TKTKIRAAEENPELLGVLL-TSKNTSLWIDTRSIDPELDAALAAWLSDEAARKIV----M 461

Query: 76  ERTV---LKACFNLDIPIHRWICTLVLARSNGL---------PSALKAVGEALK------ 117
           +  V   L   +  ++         + +   G             ++ + E         
Sbjct: 462 DLKVQRKLLRAYGYELA-GAVEDPALSSYMCGFIPTATRKLFSERMEDLAERYLWIPKDP 520

Query: 118 -----LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREI 171
                   ++ E    L +   + E  + L                  Y         E 
Sbjct: 521 YAQLVFQPEEDEAEPSLFSLPGEAEPVDNLRYFTQISRIIHELARLLHY-------EMEE 573

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG--- 228
             +L+     E  L Y+   +   G  V  AL   L+        +      ++      
Sbjct: 574 HGQLKVYEEIELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQDAARTIIGDTVQ 633

Query: 229 -----LVSSSRCLEKLKTWLFLETGLHLEDLTET---TCQR-VLSSNKKLTPQ-----AI 274
                   +   +++L+T LF +  L      ++   T    V     K++P+      +
Sbjct: 634 TDDGEEPLNLASVKQLQTVLFDKLALPHTRKIKSGYSTDAESVTELLAKISPESDGAAFL 693

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                     +     +  L +A   DGR+  T Q  GA+ TGR S      QN+P  + 
Sbjct: 694 GALAAYRDNIKLVQT-VEGLQKAAADDGRVHTTFQQ-GAASTGRLSSTAPNLQNIPIRTE 751

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK-------LVVADLAGIEAR 387
                                        +R   I +           L+ AD + IE R
Sbjct: 752 EGRR-------------------------IRGAFIVAPAPVDGVEYEGLLTADYSQIEMR 786

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           ++  +A ++  + A+E GEDL+    +  F VAP +VT +QR+  K M   L Y      
Sbjct: 787 IMVHLAADEKLIAAYEAGEDLHRYVGSEVFGVAPEEVTPEQRSKVKAMSYGLAYG----- 841

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
             +      LN+++        +  + +     F R + +   +    +   G       
Sbjct: 842 LSRFGLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVLKQAHQDGYTETIFGRRRVLPD 901

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
                +  R         +A       G A    K   + +                 R 
Sbjct: 902 LDSPNRVRR-----EAAERAALNAPIQGTAADIIKIAMINIH----------------RR 940

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
           L    +                                        ++        I+L 
Sbjct: 941 LREEGLKT------------------------------------RMLLQVHDE---IIL- 960

Query: 628 VHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674
                  E    +   A  +    M+   S    +PL  +    K ++
Sbjct: 961 -------EVATGEREAAERVLVEEMSGAAS--LRVPLDVQVGWGKSWQ 999


>gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 112/408 (27%), Gaps = 91/408 (22%)

Query: 277  FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                          +  L   +    +GR+  +L     + TGR S      QN P    
Sbjct: 821  LCEMCSIGSLISNFILPLQGQDVSGENGRIHCSLNIN--TETGRLSARRPNLQNQP---- 874

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   +A++G  L+VAD   +E R+LA +A 
Sbjct: 875  ---------------------ALEKDRYKIRQAFVAAQGNSLIVADYGQLELRILAHLAN 913

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +  L AF+ G D +  T    +      V                     +   +    
Sbjct: 914  CKSMLDAFKAGGDFHSRTAMNMYTHIREAVEN------------------GRVLLEWHPQ 955

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G        L     +        NF     +     A +        +     W +  
Sbjct: 956  PGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARDWKVSVKEAKETVDRWYRDR 1015

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              VS+   +      +                             +    GR+  +  V 
Sbjct: 1016 KEVSDWQEQRKFEARE--------------------------FRRVHTLLGRARWFPSVK 1049

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628
            N      +    + R            VQ  + D+    M+         + G+ ++L V
Sbjct: 1050 N---ATGSVKGHIERAAINTP------VQGSAADVAMCAMLEISKNARLEELGWKLLLQV 1100

Query: 629  HDEIVCETPDTDE-FNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
            HDE++ E P+  E    +++   M+          + L  +   +K +
Sbjct: 1101 HDEVILEGPEESENEAMAIVVDCMSKPFGGKNILRVDLSVDSKCAKNW 1148



 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 93/347 (26%), Gaps = 79/347 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DCVHDP--VMPQ 55
             D E  + ID+ +       +   +I F+        F D    +W D +      +  
Sbjct: 388 ACDTE-VAKIDVKQQTP---VDHGEIICFSIYSGPEADFGDGKSCIWVDVLDGDGKNLLV 443

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108
                 ++  +  V HN  F+  V++        +  +   T+ +AR            +
Sbjct: 444 EFAPFFQDPSIRKVWHNYSFDNHVIENY---GFKVSGFHADTMHMARLWDSSRRTSGGYS 500

Query: 109 LKAV--------------GEALKLSS-------QKMEEGKELIARFCKGETHECLYDRNK 147
           L+A+               E L            K   G++ + +         +    +
Sbjct: 501 LEALTGDSTVMRDARPVHAERLFHGEGLFGKISMKTIFGRKKLKKDGTEGKVTVIPSVEE 560

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWY 187
                   L+  Y   D   T  +++ L+                          +    
Sbjct: 561 LQK-TERELWICYSALDSISTLMLYESLKNKLAKRIWTFDGVRKGSMYEFYEKYWRPFGE 619

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG-----LVSSSRCLEKLKTW 242
           L   +   G  VD A    + ++   E+        +            +     +L+  
Sbjct: 620 LLVQMETEGVLVDRAYLAEIEKVAKAEQQVAANRFRNWAAKYCHDAKYMNVGSDTQLRQL 679

Query: 243 LF--------LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNR 280
            F         +  L  E   +     +V    KK   +  ++  +R
Sbjct: 680 FFGGIQNRKNSDESLPYEKEFKVPNIDKVTEEGKKAPTKFRKIRLHR 726


>gi|332019330|gb|EGI59836.1| Helicase POLQ-like protein [Acromyrmex echinatior]
          Length = 2176

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 92/672 (13%), Positives = 195/672 (29%), Gaps = 122/672 (18%)

Query: 17   TKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------DPVMPQVLKEALENTD-VTI 68
             K G   +  +  +   A  ++ +        +             +LK+ L +T     
Sbjct: 1588 RKSGNYSH-GNKEIRGVAISWESNIAYYISFSNSQESKVSGKEQMALLKDLLYDTTLYMK 1646

Query: 69   VAHNSYFER-TVLKACFNLDIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEE 125
                +  +   +L  C  +     R++  ++     +N        +   L+   Q    
Sbjct: 1647 CF--ATKDIYKLLYQCCGITAK-CRFLDPIIGHWLYTNDFERNFNEM--VLEYFQQG--- 1698

Query: 126  GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---- 181
               +I +  K   +       + +    +R   E       +T  +   +     +    
Sbjct: 1699 --NVIMKRIKSCYYAGPGMDARNSLPGEFRSAAE-----AVLTWHMMDNIMNKLEELNPA 1751

Query: 182  --------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                    E  +      +   G  V++     L+ +V  E   L+ +   L      + 
Sbjct: 1752 LLYTFREVEMRIMTTLACMELSGIGVNLKSLQELSSVVSNEMQSLETKAYDLAGRK-FNF 1810

Query: 234  RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
               +++   L L     +     +T + VL            +  +  + + +    +  
Sbjct: 1811 SSSKEVGQVLGLYKDKKV-----STSKTVLEKCDNP---ISTLVISWRKLNATKTKMIYP 1862

Query: 294  LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
            L+     D R+RG       + TGR S      QN+P+                      
Sbjct: 1863 LLNLAQGDSRVRGNCI--TCTVTGRVSMHEPNLQNVPK--------------------DF 1900

Query: 354  PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                  +   VR   +   G  ++ AD   +E R+L   + +    K  +   D++    
Sbjct: 1901 SFADNNLVVSVRMAFVPVLGNIMLSADYCQLELRLLTHFSQDSILCKIMKQSGDIFKNIA 1960

Query: 414  ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            A+  NVA  QVT + R   K +   + Y  G K+  +      L ++         S   
Sbjct: 1961 AKWNNVAEEQVTNEMRQRTKQLCYGMIYGMGVKSLAE-----NLCISEPEAQEFLESFMS 2015

Query: 474  EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
             +     +   + E           +G          R++   +S   + +    E+   
Sbjct: 2016 AYPGIYKWLNDILEEAHHDGYVTTLLGR---------RREFPDLSSTKSSVRAQAERQSV 2066

Query: 534  NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
            N K   +        +   +DK              + D  +   +      +  R    
Sbjct: 2067 NTKVQGSAADIVKKAMISIEDKI----------RCYFPD--SAIIFPEVHASRKLRS--- 2111

Query: 594  GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMT 652
                                  N  + G  +VL +HDE++ E    D    A+++   M 
Sbjct: 2112 ----------------------NLQQRGGYLVLQLHDELLYEVNLADLKKFAAIIRESME 2149

Query: 653  SNPSWAKGLPLK 664
            +       LP+K
Sbjct: 2150 NVCQLTVPLPVK 2161


>gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera]
          Length = 1118

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 113/408 (27%), Gaps = 91/408 (22%)

Query: 277  FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                   +      +  L   E    +GR+  +L     + TGR S      QN P    
Sbjct: 787  LCEVCSINSLISNFILPLQDGEISGKNGRIHCSLNIN--TETGRLSARRPNLQNQP---- 840

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   IA+ G  L+VAD   +E R+LA +A 
Sbjct: 841  ---------------------ALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLAN 879

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +  L AF+ G D +  T    +      V K +                     +    
Sbjct: 880  CKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKREV------------------LLEWHPQ 921

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G +      L     +        NF     +     A +            + W ++ 
Sbjct: 922  PGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARETVERWYKER 981

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              V     +  +                                 +    GR+  +  V 
Sbjct: 982  KEVLAWQEKRKKEATTLK--------------------------YVCTLLGRARSFPSVH 1015

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628
            +      +    + R            VQ  + D+    M+         + G+ ++L V
Sbjct: 1016 H---ATASQRGHIERAAINTP------VQGSAADVAMCAMLEISRNARLKELGWKLLLQV 1066

Query: 629  HDEIVCETP-DTDEFNASMLYHLMTSNPSW--AKGLPLKAEGYESKRY 673
            HDE++ E P ++ E   +++   M           + L  +   ++ +
Sbjct: 1067 HDEVILEGPTESAEVAKAIVVECMEKPFDGKNILSVDLAVDAKCAQNW 1114



 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 95/341 (27%), Gaps = 73/341 (21%)

Query: 2   ATL--FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DCVHDP- 51
             L    D E    +           +   +I F+        F +    +W D +    
Sbjct: 355 KHLIHACDTE----VANIDVKRETPVDHGEIICFSIYSGPEADFGNGKSCIWVDVLDGGG 410

Query: 52  -VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--- 106
             +        E+  +  V HN  F+  V++     D+ +  +   T+ +AR        
Sbjct: 411 RDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY---DLKVSGFHADTMHMARLWDSSRRA 467

Query: 107 ---SALKAVGEALK-LSSQKMEEGKELIARFC-------KGETHECLYDRNKPNHR---- 151
               +L+A+    K +S   M  G+ELI +         K    +    +          
Sbjct: 468 VGGYSLEALTRDSKVMSGAHMSNGEELIGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVL 527

Query: 152 --EAWRLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLD 189
             E  + +  Y   D   T ++++ ++                          +    L 
Sbjct: 528 QREDRKPWISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMFDFYQKYWRPFGELL 587

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF 244
             +   G  VD A    + ++   E             +        +     +L+  LF
Sbjct: 588 VQMETEGMLVDRAYLSKVEKVAKAEEQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLF 647

Query: 245 LETG--------LHLEDLTE-TTCQRVLSSNKKLTPQAIQV 276
                       L +E   +     +V+   KK   +   +
Sbjct: 648 GGVANRKDPNECLPMEKTFKIPNVDKVIEEGKKAPTKFRNI 688


>gi|148665537|gb|EDK97953.1| polymerase (DNA directed), theta, isoform CRA_c [Mus musculus]
          Length = 2273

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 89/777 (11%), Positives = 190/777 (24%), Gaps = 216/777 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---------------------- 62
             +   V+  A  +                   +  +L                       
Sbjct: 1579 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1637

Query: 63   ---NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GE 114
               + + ++V     ++      VL     + +    +    V        S    +   
Sbjct: 1638 KKSDRERSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1692

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFK 173
                   ++   + +            +   +   +R +      +     +    +   
Sbjct: 1693 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1752

Query: 174  RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              +     E    Y    +   G     A   +   ++  +   ++ +   L      S 
Sbjct: 1753 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHS-FSF 1811

Query: 234  RCLEKLKTWLFLETGLHL--------EDLTE-------------------TTCQRVLSSN 266
               + +   LFLE  L             T                    +T + +L+  
Sbjct: 1812 TSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKL 1871

Query: 267  KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCV 323
            K L P    +   R   S +    +  L    + +  LR    +  +   + TGR +   
Sbjct: 1872 KGLHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTE 1930

Query: 324  FPPQNLPRP--------------------------SRSHEELDQIITHLPTSITSDPDPL 357
               QN+PR                            +  +       H         D  
Sbjct: 1931 PNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRG 1990

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
               S  +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A   
Sbjct: 1991 VPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWK 2050

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             + P  V  D R   K +   + Y  GAK+  +      + +         +S    ++ 
Sbjct: 2051 MIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKG 2105

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
              +F R   +N  ++   +  +G          R+    + +                  
Sbjct: 2106 INHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN---------------- 2140

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                            Y      R  +NTT              
Sbjct: 2141 -------------------------------PYHKAHAERQAINTT-------------- 2155

Query: 598  TENIVQAVSRDILAEGMMNATK-------------------------------------- 619
                VQ  + DI+    +N  K                                      
Sbjct: 2156 ----VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCP 2211

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
              G   +L +HDE++ E  + D    + +    M         + LK +      + 
Sbjct: 2212 MRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2266


>gi|148665538|gb|EDK97954.1| polymerase (DNA directed), theta, isoform CRA_d [Mus musculus]
          Length = 2398

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 89/777 (11%), Positives = 190/777 (24%), Gaps = 216/777 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---------------------- 62
             +   V+  A  +                   +  +L                       
Sbjct: 1704 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1762

Query: 63   ---NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GE 114
               + + ++V     ++      VL     + +    +    V        S    +   
Sbjct: 1763 KKSDRERSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1817

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFK 173
                   ++   + +            +   +   +R +      +     +    +   
Sbjct: 1818 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1877

Query: 174  RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              +     E    Y    +   G     A   +   ++  +   ++ +   L      S 
Sbjct: 1878 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHS-FSF 1936

Query: 234  RCLEKLKTWLFLETGLHL--------EDLTE-------------------TTCQRVLSSN 266
               + +   LFLE  L             T                    +T + +L+  
Sbjct: 1937 TSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKL 1996

Query: 267  KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCV 323
            K L P    +   R   S +    +  L    + +  LR    +  +   + TGR +   
Sbjct: 1997 KGLHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTE 2055

Query: 324  FPPQNLPRP--------------------------SRSHEELDQIITHLPTSITSDPDPL 357
               QN+PR                            +  +       H         D  
Sbjct: 2056 PNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRG 2115

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
               S  +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A   
Sbjct: 2116 VPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWK 2175

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             + P  V  D R   K +   + Y  GAK+  +      + +         +S    ++ 
Sbjct: 2176 MIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKG 2230

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
              +F R   +N  ++   +  +G          R+    + +                  
Sbjct: 2231 INHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN---------------- 2265

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                            Y      R  +NTT              
Sbjct: 2266 -------------------------------PYHKAHAERQAINTT-------------- 2280

Query: 598  TENIVQAVSRDILAEGMMNATK-------------------------------------- 619
                VQ  + DI+    +N  K                                      
Sbjct: 2281 ----VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCP 2336

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
              G   +L +HDE++ E  + D    + +    M         + LK +      + 
Sbjct: 2337 MRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2391


>gi|148665536|gb|EDK97952.1| polymerase (DNA directed), theta, isoform CRA_b [Mus musculus]
          Length = 2119

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 89/777 (11%), Positives = 190/777 (24%), Gaps = 216/777 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---------------------- 62
             +   V+  A  +                   +  +L                       
Sbjct: 1425 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1483

Query: 63   ---NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GE 114
               + + ++V     ++      VL     + +    +    V        S    +   
Sbjct: 1484 KKSDRERSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1538

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFK 173
                   ++   + +            +   +   +R +      +     +    +   
Sbjct: 1539 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1598

Query: 174  RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              +     E    Y    +   G     A   +   ++  +   ++ +   L      S 
Sbjct: 1599 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHS-FSF 1657

Query: 234  RCLEKLKTWLFLETGLHL--------EDLTE-------------------TTCQRVLSSN 266
               + +   LFLE  L             T                    +T + +L+  
Sbjct: 1658 TSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKL 1717

Query: 267  KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCV 323
            K L P    +   R   S +    +  L    + +  LR    +  +   + TGR +   
Sbjct: 1718 KGLHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTE 1776

Query: 324  FPPQNLPRP--------------------------SRSHEELDQIITHLPTSITSDPDPL 357
               QN+PR                            +  +       H         D  
Sbjct: 1777 PNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRG 1836

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
               S  +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A   
Sbjct: 1837 VPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWK 1896

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             + P  V  D R   K +   + Y  GAK+  +      + +         +S    ++ 
Sbjct: 1897 MIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKG 1951

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
              +F R   +N  ++   +  +G          R+    + +                  
Sbjct: 1952 INHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN---------------- 1986

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                            Y      R  +NTT              
Sbjct: 1987 -------------------------------PYHKAHAERQAINTT-------------- 2001

Query: 598  TENIVQAVSRDILAEGMMNATK-------------------------------------- 619
                VQ  + DI+    +N  K                                      
Sbjct: 2002 ----VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCP 2057

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
              G   +L +HDE++ E  + D    + +    M         + LK +      + 
Sbjct: 2058 MRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2112


>gi|32306445|gb|AAN39838.1| DNA polymerase Q [Mus musculus]
          Length = 2587

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 89/777 (11%), Positives = 190/777 (24%), Gaps = 216/777 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---------------------- 62
             +   V+  A  +                   +  +L                       
Sbjct: 1893 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1951

Query: 63   ---NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GE 114
               + + ++V     ++      VL     + +    +    V        S    +   
Sbjct: 1952 KKSDRERSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 2006

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFK 173
                   ++   + +            +   +   +R +      +     +    +   
Sbjct: 2007 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 2066

Query: 174  RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              +     E    Y    +   G     A   +   ++  +   ++ +   L      S 
Sbjct: 2067 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHS-FSF 2125

Query: 234  RCLEKLKTWLFLETGLHL--------EDLTE-------------------TTCQRVLSSN 266
               + +   LFLE  L             T                    +T + +L+  
Sbjct: 2126 TSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKL 2185

Query: 267  KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCV 323
            K L P    +   R   S +    +  L    + +  LR    +  +   + TGR +   
Sbjct: 2186 KGLHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTE 2244

Query: 324  FPPQNLPRP--------------------------SRSHEELDQIITHLPTSITSDPDPL 357
               QN+PR                            +  +       H         D  
Sbjct: 2245 PNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRG 2304

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
               S  +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A   
Sbjct: 2305 VPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWK 2364

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             + P  V  D R   K +   + Y  GAK+  +      + +         +S    ++ 
Sbjct: 2365 MIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKG 2419

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
              +F R   +N  ++   +  +G          R+    + +                  
Sbjct: 2420 INHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN---------------- 2454

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                            Y      R  +NTT              
Sbjct: 2455 -------------------------------PYHKAHAERQAINTT-------------- 2469

Query: 598  TENIVQAVSRDILAEGMMNATK-------------------------------------- 619
                VQ  + DI+    +N  K                                      
Sbjct: 2470 ----VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCP 2525

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
              G   +L +HDE++ E  + D    + +    M         + LK +      + 
Sbjct: 2526 MRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2580


>gi|226823286|ref|NP_001152841.1| DNA polymerase theta isoform 2 [Mus musculus]
 gi|27464957|gb|AAN64234.1| DNA polymerase theta short isoform [Mus musculus]
          Length = 2265

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 89/777 (11%), Positives = 190/777 (24%), Gaps = 216/777 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---------------------- 62
             +   V+  A  +                   +  +L                       
Sbjct: 1571 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1629

Query: 63   ---NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GE 114
               + + ++V     ++      VL     + +    +    V        S    +   
Sbjct: 1630 KKSDRERSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1684

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFK 173
                   ++   + +            +   +   +R +      +     +    +   
Sbjct: 1685 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1744

Query: 174  RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              +     E    Y    +   G     A   +   ++  +   ++ +   L      S 
Sbjct: 1745 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHS-FSF 1803

Query: 234  RCLEKLKTWLFLETGLHL--------EDLTE-------------------TTCQRVLSSN 266
               + +   LFLE  L             T                    +T + +L+  
Sbjct: 1804 TSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKL 1863

Query: 267  KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCV 323
            K L P    +   R   S +    +  L    + +  LR    +  +   + TGR +   
Sbjct: 1864 KGLHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTE 1922

Query: 324  FPPQNLPRP--------------------------SRSHEELDQIITHLPTSITSDPDPL 357
               QN+PR                            +  +       H         D  
Sbjct: 1923 PNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRG 1982

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
               S  +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A   
Sbjct: 1983 VPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWK 2042

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             + P  V  D R   K +   + Y  GAK+  +      + +         +S    ++ 
Sbjct: 2043 MIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKG 2097

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
              +F R   +N  ++   +  +G          R+    + +                  
Sbjct: 2098 INHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN---------------- 2132

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                            Y      R  +NTT              
Sbjct: 2133 -------------------------------PYHKAHAERQAINTT-------------- 2147

Query: 598  TENIVQAVSRDILAEGMMNATK-------------------------------------- 619
                VQ  + DI+    +N  K                                      
Sbjct: 2148 ----VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCP 2203

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
              G   +L +HDE++ E  + D    + +    M         + LK +      + 
Sbjct: 2204 MRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2258


>gi|30387615|ref|NP_084253.1| DNA polymerase theta isoform 1 [Mus musculus]
 gi|29825886|gb|AAL77225.1| DNA polymerase theta [Mus musculus]
 gi|148665535|gb|EDK97951.1| polymerase (DNA directed), theta, isoform CRA_a [Mus musculus]
 gi|187953885|gb|AAI38361.1| Polymerase (DNA directed), theta [Mus musculus]
 gi|187956948|gb|AAI57901.1| Polymerase (DNA directed), theta [Mus musculus]
          Length = 2544

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 89/777 (11%), Positives = 190/777 (24%), Gaps = 216/777 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE---------------------- 62
             +   V+  A  +                   +  +L                       
Sbjct: 1850 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1908

Query: 63   ---NTDVTIVAHNSYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-GE 114
               + + ++V     ++      VL     + +    +    V        S    +   
Sbjct: 1909 KKSDRERSVVT----YDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1963

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFK 173
                   ++   + +            +   +   +R +      +     +    +   
Sbjct: 1964 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 2023

Query: 174  RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              +     E    Y    +   G     A   +   ++  +   ++ +   L      S 
Sbjct: 2024 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHS-FSF 2082

Query: 234  RCLEKLKTWLFLETGLHL--------EDLTE-------------------TTCQRVLSSN 266
               + +   LFLE  L             T                    +T + +L+  
Sbjct: 2083 TSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKL 2142

Query: 267  KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCV 323
            K L P    +   R   S +    +  L    + +  LR    +  +   + TGR +   
Sbjct: 2143 KGLHPLPGLILEWRR-ISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRITFTE 2201

Query: 324  FPPQNLPRP--------------------------SRSHEELDQIITHLPTSITSDPDPL 357
               QN+PR                            +  +       H         D  
Sbjct: 2202 PNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRG 2261

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
               S  +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++ +  A   
Sbjct: 2262 VPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWK 2321

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             + P  V  D R   K +   + Y  GAK+  +      + +         +S    ++ 
Sbjct: 2322 MIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKG 2376

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
              +F R   +N  ++   +  +G          R+    + +                  
Sbjct: 2377 INHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN---------------- 2411

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                                            Y      R  +NTT              
Sbjct: 2412 -------------------------------PYHKAHAERQAINTT-------------- 2426

Query: 598  TENIVQAVSRDILAEGMMNATK-------------------------------------- 619
                VQ  + DI+    +N  K                                      
Sbjct: 2427 ----VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCP 2482

Query: 620  -AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
              G   +L +HDE++ E  + D    + +    M         + LK +      + 
Sbjct: 2483 MRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKIGASWG 2537


>gi|259502604|ref|ZP_05745506.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
 gi|259169419|gb|EEW53914.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           antri DSM 16041]
          Length = 169

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 6/169 (3%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET S  +L + G+ +YA+  D  ++LF +  D  PV++ D      +P  + 
Sbjct: 1   MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYSTDFGPVKVVDLTQGEKIPPQII 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL+N ++   A N+ FER  L       +    W C+ V + + GLP +L+ VG  L L
Sbjct: 61  EALDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDVGSVLGL 120

Query: 119 SSQKMEEGKELIARF---CKGETHECLYDRNKPNH-REAWRLFGEYCKG 163
             QK+  GKEL+  F   CK         RN P H  + W+ F +Y + 
Sbjct: 121 PRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQA 169


>gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum]
          Length = 1076

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 72/506 (14%), Positives = 133/506 (26%), Gaps = 123/506 (24%)

Query: 183  QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             E   L   +   G   D    H L Q    E + L+ E   L      +     ++   
Sbjct: 673  LESTELLARLEATGIAFDRQAGHDLLQRTKSEMSSLEAEGRRLASMP-FNFDSPSEIANV 731

Query: 243  LFLETGLHL---------EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
            LF+  G+                +T + VL         A  +     + + +    L  
Sbjct: 732  LFVRMGIQPVSGCGGSGAPRRHYSTNKEVLQRLAPKHRIAAIILK-WRKLNTALSSSLQN 790

Query: 294  LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
            L+ A  S+GR+  +      + TGR        QN+ + +                    
Sbjct: 791  LLRACRSNGRIHASF--TTFTGTGRVQSVHPNVQNVQKDALID----------------- 831

Query: 354  PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                   S  VRS  +A  G  LV AD + +E RVLA ++ ++   K F  G D + T  
Sbjct: 832  -------SLSVRSLFVAPPGFVLVSADYSQLELRVLAGLSKDEGLCKLFRNGGDFFQTVT 884

Query: 414  ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
             R        V  D                                              
Sbjct: 885  DRWNANTSIDVPLD---------------------------------------------R 899

Query: 474  EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
            +      +                      + + +++ ++  +V           E    
Sbjct: 900  QKVKQLCYAIIYGMGAITLGERIGTTKQNAQHLIESFFKEFPKVRSWM---DATLESCRR 956

Query: 534  NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
            +  A+                          GR           S + +   +  R+   
Sbjct: 957  DACAVTIL-----------------------GRRRPL---KCGESVVQSDRARAERQAI- 989

Query: 594  GGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDT-DEFNASMLY 648
                  + +Q  + +I    ++   K        IV+ VHDE++ E  +         + 
Sbjct: 990  -----NSTIQGSASEIFKSALLKLEKNLKDLDARIVMQVHDEVIVELNEACFSTAVERIE 1044

Query: 649  HLMTSNPSWAKGLPLKAEGYESKRYR 674
              M +       +PL  +      + 
Sbjct: 1045 SAMLNALPEFP-VPLSVKISSGTNWG 1069


>gi|330801495|ref|XP_003288762.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum]
 gi|325081196|gb|EGC34721.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum]
          Length = 489

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 69/561 (12%), Positives = 163/561 (29%), Gaps = 125/561 (22%)

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            Y    + + RE  K      + E ++  +   +   G   +  ++ +   ++  +   L
Sbjct: 2   RYYIQSLHIQREDNKFFNIFLNIEMKILPIFAMMEYVGIGFNEKVSESGKHLIQRKIEYL 61

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-------------VLSS 265
           D +   L  G   S    + +   LF +  +   ++ ++T ++             VL  
Sbjct: 62  DYKAHVLLPGKTFSLSSGDNVSEILFTDLKIPPPEIAKSTSRKNRLKKQYYLTNSVVLEQ 121

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM----NSDGRLRGTLQFLGASRTGRWSG 321
                P    + +     +      ++ L + +    +       +        TGR + 
Sbjct: 122 INHYHPLPS-IISEYRVLTHHISHYIDVLGKYLFRSDHYQMDRIYSTIQQTIVPTGRIAM 180

Query: 322 CVFPPQNL--PRPSRSHEELDQIITHLPTSITSDPDPL-----------------QIISD 362
                QN+  P   +   E+D     + +   S                       +I+ 
Sbjct: 181 ENPNLQNISHPIDFKRAPEIDFSQESIKSFNESLDRFEYLSDEHYLSLLQMDKSCDVITV 240

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA--FETGEDLYVTTYARSFNVA 420
            +R+  I + G KL+  D   +E R+L  ++ +   ++        D++     +  N+ 
Sbjct: 241 SIRNAFIPANGCKLLSVDYGQLELRILTHLSQDPKLMEMFNCNINIDIFKYVAHQVGNIP 300

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              VT   R   K +   + Y                                       
Sbjct: 301 YDSVTDSDRQQAKHLVYGILY--------------------------------------- 321

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                       A E            + +++ ++++ E    + +   Q          
Sbjct: 322 -----GMGIKSIASELHIPIEQARGKLENFKKTYNKLIEYLEMVEENVIQ---------- 366

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                           N  +    GR   + ++ + +   N    ++ R          +
Sbjct: 367 ----------------NGYIATLFGRVRNFSNIHSCK-IDNNEISKVKRAA------RNS 403

Query: 601 IVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653
           I Q  + DI    M+              ++L +HDEI+ E P+ + + ++ +    M +
Sbjct: 404 IPQGTAADIAKMAMIKIQDELDKNHFKAQMILQLHDEILFEVPENELYQSAQIIKYSMEN 463

Query: 654 NPSWAKGLPLKAEGYESKRYR 674
               +  LP+K        + 
Sbjct: 464 VVKLSVSLPIKM--SIGPNWG 482


>gi|297670244|ref|XP_002813286.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Pongo
            abelii]
          Length = 2728

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 96/778 (12%), Positives = 191/778 (24%), Gaps = 216/778 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D+ V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 2032 CDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 2091

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 2092 ESDQECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 2150

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 2151 PHELPLLEGMETSQGIQSLGLNVGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 2209

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALA-HTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E    Y    +   G     A    +   I+  +   ++ +   L      S    
Sbjct: 2210 FRKVEMPSQYCLSLLELNGIGFSTAECYESQKHIMQAKLEAIETQAYQLAGHS-FSFTSS 2268

Query: 237  EKLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKL 269
            + +   LFLE  L                      ++  +       +T + VL+  K L
Sbjct: 2269 DDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKAL 2328

Query: 270  TPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
             P    +   R   +  A+ K+         +       R+    Q   A+  GR +   
Sbjct: 2329 HPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFTE 2384

Query: 324  FPPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDP 356
               QN+PR                             +  +                 D 
Sbjct: 2385 PNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGCSLNPRCQAQMEERAADR 2444

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A  
Sbjct: 2445 GMPFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEW 2504

Query: 417  FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
              + P  V  D R   K +   + Y  GAK+  +      + +         +S    + 
Sbjct: 2505 KMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYT 2559

Query: 477  DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                F     +N          +G          R+    + +                 
Sbjct: 2560 GINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD----------------- 2593

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                          +  YR     R  +NTT             
Sbjct: 2594 ------------------------------NNPYRKAHAERQAINTT------------- 2610

Query: 597  LTENIVQAVSRDILAEGMMNATK------------------------------------- 619
                 VQ  + DI+    +N  K                                     
Sbjct: 2611 -----VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSQKRKLQGMFC 2665

Query: 620  --AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
               G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2666 PIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2721


>gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158]
 gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158]
          Length = 248

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 98/320 (30%), Gaps = 88/320 (27%)

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   IA+ G ++V AD + IE R++A ++G+   L+AF  GED++  T A  F V 
Sbjct: 6   GRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVT 65

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           P +V  DQR I KV+                    G++                      
Sbjct: 66  PLEVNADQRRIAKVIN--------------FGLIYGMS---------------------- 89

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                       A        A +     +  ++  V++       + ++          
Sbjct: 90  --------AFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMENTRASAKE---------- 131

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                              +    GR L   ++               R           
Sbjct: 132 ----------------KGYVETVFGRRLWLPEINGGNGPRRQA---AERAAINAP----- 167

Query: 601 IVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTS 653
            +Q  + D++   M+         K    +++ VHDE+V E PD +       L  +M  
Sbjct: 168 -MQGTAADLIKLSMIAVDQWLTRDKLASRMIMQVHDELVLEVPDDELPLVREKLPEMMCG 226

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                  +PL AE      +
Sbjct: 227 VAK--LKVPLVAEVGAGANW 244


>gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum]
          Length = 1152

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 111/408 (27%), Gaps = 91/408 (22%)

Query: 277  FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                          +  L   +    +GR+  +L     + TGR S      QN P    
Sbjct: 821  LCEMCSIDSLISNFILPLQGQDVSGENGRIHCSLNIN--TETGRLSARRPNLQNQP---- 874

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   +A++G  L+VAD   +E R+LA +A 
Sbjct: 875  ---------------------ALEKDRYKIRQAFVAAQGNSLIVADYGQLELRILAHLAN 913

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +  L AF+ G D +  T    +      V   +                     +    
Sbjct: 914  RKSMLDAFKAGGDFHSRTAMNMYTHIREAVENGEV------------------LLEWHPQ 955

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G        L     +        NF     +     A +        +     W    
Sbjct: 956  PGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARDWKVSVKEAKETVDRWYSDR 1015

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              VS+   +      +                             +    GR+  +  V 
Sbjct: 1016 KEVSDWQEQRKFEARE--------------------------FRRVHTLLGRARWFPSVK 1049

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628
            N      +    + R            VQ  + D+    M+         + G+ ++L V
Sbjct: 1050 N---ATGSVKGHIERAAINTP------VQGSAADVAMCAMLEISKNARLEELGWKLLLQV 1100

Query: 629  HDEIVCETPDTDE-FNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
            HDE++ E P+  E    +++   M+          + L  +   +K +
Sbjct: 1101 HDEVILEGPEESENEAMAIVVDCMSKPFGGKNILRVDLSVDSKCAKNW 1148



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 78/302 (25%), Gaps = 70/302 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVE-LWDCVHD--PVMPQ 55
             D E  + ID+ +       +   +I F+        F D       D +      +  
Sbjct: 388 ACDTE-VAKIDVKQQTP---VDHGDIICFSIYSGPEADFGDGKSCIWVDVLDGGGKNLLV 443

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108
                 ++  +  V HN  F+  V++        +  +   T+ +AR            +
Sbjct: 444 EFAPFFQDPSIRKVWHNYSFDNHVIENY---GFKVSGFHADTMHMARLWDSSRRTSGGYS 500

Query: 109 LKAV--------------GEALKLSS-------QKMEEGKELIARFCKGETHECLYDRNK 147
           L+A+               E L            K   G++ + +         +    +
Sbjct: 501 LEALTGDSTVMRDARPVHAERLFHGEGLFGKISMKTIFGRKKLKKDGTEGKVTVIPSVEE 560

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWY 187
                   L+  Y   D   T  +++ L+                          +    
Sbjct: 561 LQK-TERELWICYSALDSISTLMLYESLKNKLSKRIWTFDGVRKGSMYEFYERYWRPFGE 619

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG-----LVSSSRCLEKLKTW 242
           L   +   G  VD A    + ++   E+        +            +     +L+  
Sbjct: 620 LLVQMETEGVLVDRAYLAEIEKVAKAEQQVAANRFRNWAAKYCPDAKYMNVGSDTQLRQL 679

Query: 243 LF 244
            F
Sbjct: 680 FF 681


>gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1034

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 113/408 (27%), Gaps = 91/408 (22%)

Query: 277  FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                   +      +  L   E    +GR+  +L     + TGR S      QN P    
Sbjct: 703  LCEVCSINSLISNFILPLQDGEISGKNGRIHCSLNIN--TETGRLSARRPNLQNQP---- 756

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   IA+ G  L+VAD   +E R+LA +A 
Sbjct: 757  ---------------------ALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLAN 795

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +  L AF+ G D +  T    +      V K +                     +    
Sbjct: 796  CKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKREV------------------LLEWHPQ 837

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G +      L     +        NF     +     A +            + W ++ 
Sbjct: 838  PGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARETVERWYKER 897

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              V     +  +                                 +    GR+  +  V 
Sbjct: 898  KEVLAWQEKRKKEATTLK--------------------------YVCTLLGRARSFPSVH 931

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628
            +      +    + R            VQ  + D+    M+         + G+ ++L V
Sbjct: 932  H---ATASQRGHIERAAINTP------VQGSAADVAMCAMLEISRNARLKELGWKLLLQV 982

Query: 629  HDEIVCETP-DTDEFNASMLYHLMTSNPSW--AKGLPLKAEGYESKRY 673
            HDE++ E P ++ E   +++   M           + L  +   ++ +
Sbjct: 983  HDEVILEGPTESAEVAKAIVVECMEKPFDGKNILSVDLAVDAKCAQNW 1030



 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 95/341 (27%), Gaps = 73/341 (21%)

Query: 2   ATL--FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DCVHDP- 51
             L    D E    +           +   +I F+        F +    +W D +    
Sbjct: 271 KHLIHACDTE----VANIDVKRETPVDHGEIICFSIYSGPEADFGNGKSCIWVDVLDGGG 326

Query: 52  -VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP--- 106
             +        E+  +  V HN  F+  V++     D+ +  +   T+ +AR        
Sbjct: 327 RDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY---DLKVSGFHADTMHMARLWDSSRRA 383

Query: 107 ---SALKAVGEALK-LSSQKMEEGKELIARFC-------KGETHECLYDRNKPNHR---- 151
               +L+A+    K +S   M  G+ELI +         K    +    +          
Sbjct: 384 VGGYSLEALTRDSKVMSGAHMSNGEELIGKVSMKTIFGKKKLKKDGTEGKIITIAPVEVL 443

Query: 152 --EAWRLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLD 189
             E  + +  Y   D   T ++++ ++                          +    L 
Sbjct: 444 QREDRKPWISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMFDFYQKYWRPFGELL 503

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF 244
             +   G  VD A    + ++   E             +        +     +L+  LF
Sbjct: 504 VQMETEGMLVDRAYLSKVEKVAKAEEQVAANRFRNWASKHCPDAKYMNVGSDTQLRQLLF 563

Query: 245 LETG--------LHLEDLTE-TTCQRVLSSNKKLTPQAIQV 276
                       L +E   +     +V+   KK   +   +
Sbjct: 564 GGVANRKDPNECLPMEKTFKIPNVDKVIEEGKKAPTKFRNI 604


>gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
 gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM
           2876]
          Length = 239

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 113/288 (39%), Gaps = 61/288 (21%)

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
           +K F+   D+Y  + +  F+V   +       R  GK+ ELALGY G   A   +     
Sbjct: 1   MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIG---- 56

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                               A++        + +  +WR  +  
Sbjct: 57  ------------------------------------ALDTGLSEDELQPLVDSWRASNPN 80

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVG 574
           + + W ++ +  +  I+   A      R             L ++LPSGR L Y    +G
Sbjct: 81  IVQFWWDVDRCVKTAIKQRTATETHGIR------FVYQNGILFIVLPSGRRLCYVKPKIG 134

Query: 575 NNRSYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
            N+    + T       ++  R  +YG K  ENIVQA+SRDIL   M   +     IV  
Sbjct: 135 ENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHSMRTLSH--CFIVGH 192

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VHDE++ ETP   +  A  +   +   P W  GL L+A+GYE+  Y+K
Sbjct: 193 VHDELIIETPMDADLTA--ICEQIGRTPKWIYGLLLRADGYETAFYKK 238


>gi|255024133|ref|ZP_05296119.1| DNA polymerase I [Listeria monocytogenes FSL J1-208]
          Length = 240

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 88/317 (27%), Gaps = 89/317 (28%)

Query: 365 RSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           R   +    G K+  AD + +E RVLA ++ ++  + AF+   D++  T    F+V   +
Sbjct: 1   RQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDE 60

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           V    R   K +                    G++    +                    
Sbjct: 61  VDSLMRRQAKAVN--------------FGIVYGISDYGLSQ------------------- 87

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                               +     +   +  V E   ++ +  ++  +     I    
Sbjct: 88  -----------NLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH-- 132

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                                 R     ++ +             R            +Q
Sbjct: 133 ----------------------RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQ 161

Query: 604 AVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPS 656
             + DI+ + M+         K    ++L VHDE++ E P+ +      +   +M +   
Sbjct: 162 GSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE 221

Query: 657 WAKGLPLKAEGYESKRY 673
               +PLK +      +
Sbjct: 222 --LSVPLKVDSAFGDTW 236


>gi|255071395|ref|XP_002507779.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
 gi|226523054|gb|ACO69037.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299]
          Length = 1974

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/552 (13%), Positives = 148/552 (26%), Gaps = 125/552 (22%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------YGLVSSS 233
              E  L      +   G   D ++     +  +    ++++E ++L            S 
Sbjct: 1482 DAEMRLVPALAQMEATGVAFDPSVLCRQMRQANRRLREIEREADALVSKQVPGAEPAFSL 1541

Query: 234  RCLEKLKTWLFLETGLHLE----------DLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                 +   LF    L                      VL++ K  +     V  +R   
Sbjct: 1542 ASSADVARVLFENLKLPPPPCAVVQCGNGRRRLRANAEVLAALKDQSDLPALVLEHR--- 1598

Query: 284  SRSA--VLKLNTLVEAM-------------NSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
               +  V   + +VE                   RLRG +     + TGR +      Q 
Sbjct: 1599 -TLSRCVAMADEMVELALGGARRDEGNSSRGKITRLRGAIHQTN-TETGRLAMEEPNLQT 1656

Query: 329  LPRP--------SRSHEELDQIITHLPTSITSDPDPLQIISDC----VRSCVIASEGKKL 376
            +P+P              +           T +P P   +       VR+  +A  G  L
Sbjct: 1657 VPKPRTFRMADAYDGRPGIIAPEGSAKAHKTREPSPGTEVGSEETLSVRNAFVAPPGAVL 1716

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY--------ARSFNVAPAQVTKDQ 428
            + AD   +E RV+A M+G++  ++AF                   +R   V   +V+   
Sbjct: 1717 LSADYRQLELRVMAHMSGDEGLVRAFNHEGAPPHHPDADPFRFLASRWRGVEVGKVSDAD 1776

Query: 429  RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
            RA+ K +   + Y  G                                            
Sbjct: 1777 RAVAKQLAYGVLYGSGPA------------------------------------------ 1794

Query: 489  HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                A E     +      +A++     V     +L +   +        I  +RR +  
Sbjct: 1795 --RFAQEMGVTESEARVQIEAFKASVPGVERWRKKLIETASRASPPSVETICGRRRILSS 1852

Query: 549  VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
            +              + R        + R                  +      Q  + D
Sbjct: 1853 LAPDAALTATGCED-AKRRFRLDRSADER------------------RAVNTACQGSAAD 1893

Query: 609  ILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP-SWAKGLP 662
            ++   M+        +    VL +HDE++ E   +    A+     +M      +   +P
Sbjct: 1894 VVKRAMIAVFDELDPSLATPVLQIHDELLFEVDASRVVEAARAVRAIMERAGDEFGFTVP 1953

Query: 663  LKAEGYESKRYR 674
            L  +      + 
Sbjct: 1954 LPVKVSAGANWG 1965


>gi|119879523|ref|XP_615375.3| PREDICTED: DNA polymerase theta [Bos taurus]
 gi|297470916|ref|XP_002684835.1| PREDICTED: polymerase (DNA directed), theta-like [Bos taurus]
 gi|296491393|gb|DAA33456.1| polymerase (DNA directed), theta-like [Bos taurus]
          Length = 2593

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/778 (12%), Positives = 192/778 (24%), Gaps = 217/778 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHN---- 72
             +D+ ++  A  +       +    +          +P  L  +L   D      +    
Sbjct: 1898 CDDILLVGLAVCWGGKDAYYFSLQKEQKHSEISASLIPPSLDPSLTVKDRLRHLQSCFHK 1957

Query: 73   --------SYFE----RTVLKACFNLDIPIHRWICTLVLARSNGLPSA----LKAVGEAL 116
                      ++      +L     + +    +    V        S        V   L
Sbjct: 1958 ESDKERSVIIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSKEPTLHSIVSHFL 2016

Query: 117  KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                  +EE +        G      +        E+  +F    + +     +     +
Sbjct: 2017 PHELPLLEEIETGQGIQSLGLNVSTTHSGRYRASVESILIFNSMNQLNSL--LKKENLQD 2074

Query: 177  PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                 E    Y    +   G     A   +   I+  +   ++ +   L      S    
Sbjct: 2075 VFYKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIEMQAYQLAGHS-FSFTSS 2133

Query: 237  EKLKTWLFLETGLHL--------EDLT-----------------E--TTCQRVLSSNKKL 269
            + +   LFLE  L             T                 +  +T + VL+  + L
Sbjct: 2134 DDIAEVLFLELKLPPNGEGKNQGIKKTLGSTRRGNDNGRKLRLGKQFSTSKGVLNKLRAL 2193

Query: 270  TPQAIQVFNNRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
             P    +   R   +  A+ K+         +       R+    Q   A+  GR +   
Sbjct: 2194 HPLPGLILEWRRITN--AITKVVFPLQREKRLNPFLGMERIYPVSQSHTAT--GRITFIE 2249

Query: 324  FPPQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDP 356
               QN+PR                                ++                D 
Sbjct: 2250 PNIQNVPRDFEIKMPAVVEESPPSQALGKGLLPMGRGGRKKDCAMNAGRQTKVEERASDR 2309

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A  
Sbjct: 2310 GMPFSVSMRHAFVPFTGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEW 2369

Query: 417  FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
              + P  V  + R   K +   + Y  GAK+  +      + +         +S    + 
Sbjct: 2370 KMIEPESVGDNLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYT 2424

Query: 477  DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
               +F R   +N          +G          R+    + +                 
Sbjct: 2425 GISHFMRETVKNCKRDGFVQTILGR---------RRYLPGIKD----------------- 2458

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                          +  Y      R  +NT              
Sbjct: 2459 ------------------------------NNPYHKAHAERQAINTR------------- 2475

Query: 597  LTENIVQAVSRDILAEGMMNATK------------------------------------- 619
                 VQ  + DI+    +N  K                                     
Sbjct: 2476 -----VQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGLLQSERTGLLPKKKLQGMFC 2530

Query: 620  --AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
               G   +L +HDE++ E  + D    + +    M S       + L+ +      + 
Sbjct: 2531 PIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAIK--LSVKLRVKVRIGASWG 2586


>gi|300176838|emb|CBK25407.2| unnamed protein product [Blastocystis hominis]
          Length = 627

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 110/393 (27%), Gaps = 89/393 (22%)

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +  L    +++ R+  +L     + TGR S      QN P                 
Sbjct: 313 NTFILPLQSVADAEQRVHCSLNLN--TETGRLSSRNPNLQNQP----------------- 353

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                    L+     +R   +A  G  L+V+D   +E RVLA M   +  ++AF  G D
Sbjct: 354 --------ALEKDVYFIRKAFMAKPGNILLVSDYGQLELRVLAHMTKCKAMIEAFRLGGD 405

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            +  T    ++     + K                       +  S+ G        L  
Sbjct: 406 FHSRTALSMYDYIKEDIAKGTC------------------LLEWDSSKG--EPPAPLLKH 445

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
             ++        NF     +       +        + V   W ++   V        Q 
Sbjct: 446 KYASERRQAKILNFSLAYGKTAHGLQKDFGVSLEEAKEVLAKWYKERPEVKRWQELTIQT 505

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
            ++T                                 GR     D+ +   +        
Sbjct: 506 AKET--------------------------GFTRTLMGRYRPLPDINSKNKWKEGH---A 536

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDE 641
            R            +Q  + DI+   M+   K       G++++L +HDE++ E P  + 
Sbjct: 537 CRAAINTP------IQGGAADIVMMAMLKIEKDERLRRLGFEMLLQIHDEVILEGPIENV 590

Query: 642 FNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
             A   L   M    +    + L  +   +  +
Sbjct: 591 AEAKKCLVEDMMHPFARPLLVDLVVDCNAAPSW 623


>gi|116515191|ref|YP_802820.1| 5'-3' exonuclease domain-containing protein [Buchnera aphidicola
           str. Cc (Cinara cedri)]
 gi|116257045|gb|ABJ90727.1| 5'-3' exonuclease domain of DNA polymerase I [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 886

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/630 (12%), Positives = 184/630 (29%), Gaps = 139/630 (22%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+  LEN     +  N      + +   N+         T ++                 
Sbjct: 379 LRPILENNKYYKIGKNLKNVFHIFQEY-NILFRGIH-FDTTII-------------NYYY 423

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           KL+ +K ++ + LI ++ K +  +    +     +E+      Y            K+ E
Sbjct: 424 KLNYKKNKKYQNLIYKYKKNKKEKSFKRKFIIM-QESLISLKIYFLF---KKNIKKKKRE 479

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                +  L  +   I + G  +         +    +  K  ++          +    
Sbjct: 480 NFQLIDMSLLPILAEIENNGVLI-KKKILKKQKKNHEKTLKKLKKKIFKITKEKFNINSS 538

Query: 237 EKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L+  LF +  L     T+    +T + VL    K+      +   R+   +     L 
Sbjct: 539 KQLQNILFKKFNLPKIYKTKLGNISTNEIVLKKLSKIHILPKIILQFRL-IKKIINTYLR 597

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L++++N+      T      + TGR S      QN+P  ++   +L             
Sbjct: 598 NLIKSINNKTNRIHTTYNQINTSTGRLSSKNPNLQNIPIKTKIGRKL------------- 644

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                       R   I  +   L+ AD + IE R++A  + ++  +K     +D++++T
Sbjct: 645 ------------RIAFITKKKWLLLTADYSHIELRIIAHYSKDKNLIKDLLKNKDIHIST 692

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +  FN    +                                                 
Sbjct: 693 ASHIFNKPLEK--------------------------------------------IKKYH 708

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                  NF      +    + +        + +   +  K++++       ++  ++  
Sbjct: 709 RNIAKTINFSILYGISPFGLSKKLNISIKKSKNLIYRYFLKYNKIKRFIKNTYKTAKK-- 766

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                                      +     R L   ++ +   YL  + ++      
Sbjct: 767 ------------------------RGYIKTLFKRKLYIPNINSKNIYLKNSAKRF----- 797

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATK-------AGYDIVLTVHDEIVCETPDTDEFNAS 645
                   ++Q  + DI+ + M+               I++ +HDE++ E  +  +    
Sbjct: 798 ----CINLMIQNTASDIIKKSMITLHHLFKKKFPKDIKIIMQIHDELIFEIKEKKKDKII 853

Query: 646 M-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             +  +M +N      +PL       K ++
Sbjct: 854 DVIKKIMENNTKLI--IPLYITTKIGKNWK 881


>gi|228941086|ref|ZP_04103643.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974018|ref|ZP_04134592.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980606|ref|ZP_04140915.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228779167|gb|EEM27425.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407]
 gi|228785744|gb|EEM33749.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818629|gb|EEM64697.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939596|gb|AEA15492.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 808

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 91/761 (11%), Positives = 188/761 (24%), Gaps = 211/761 (27%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLKEAL-ENTDVTIVAH 71
           +    +     +  V+  +       V       D     +  +L E L +N  V  +A 
Sbjct: 143 ICTVSLSAAVHESRVVPISHKV--GQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 200

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARS----------NGLPSALKAVGEALKLSSQ 121
           N  FE           +   +    L++                P   K         + 
Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPK--KPTSGWGLKPAT 255

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR------- 174
           K   G  +       + ++  +         +      Y   D     + ++        
Sbjct: 256 KEIFGVTMNDFSALLKKYKVDF---FDEIDASKGEGLLYSAEDADYALQHYEYWSQIASQ 312

Query: 175 ---LEPLSS-KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
               E      E     +   +   G   D  LA    Q  ++ + +  + ++ +     
Sbjct: 313 IPQYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQVAKETF 372

Query: 231 S------SSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNK-------------- 267
           +       S    ++K+ +F    + +        +  Q  L                  
Sbjct: 373 NVDINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASLDQEALIDMAFMLENKLNDIDEEK 432

Query: 268 ----------------------------------KLTPQAIQVFNNRMRASRSAVLKLNT 293
                                             +  P   Q      +  +        
Sbjct: 433 YLSIPLPENWEIIDPDKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQ-KYTTL 491

Query: 294 LVEAMNSDGRL------RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           L   +    +       R    +   + TGR +      QN+PRP     +         
Sbjct: 492 LSSHIVGREKYLNFMSGRIHAGYSPFTETGRLNSFNPNGQNVPRPDNDEFK--------- 542

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           +R+  +   GK L   D +G E R++AW +G++   + F TG D
Sbjct: 543 ----------------IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGD 586

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T +        ++ K +R   K     + Y G   A Q                  
Sbjct: 587 MHRRTASVMTGKPEDEIVKKERTDAKAGNFGISYGGTEHALQ------------------ 628

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                  +           C ++  A +  + R+ E   ++   
Sbjct: 629 --------------------FTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLE 668

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +                             +    G   +   + +            
Sbjct: 669 ARE--------------------------QGYVQTIYGYMRLLPGINSAN---RRDRGSA 699

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----------GYDIVLTVHDEIVCET 636
            R+           VQ  + DI+ +      ++             D++  +HDEI+ E 
Sbjct: 700 ERQAANTP------VQGSAADIMKKVQNEIYESIGKQEGVLAHGSADMIAQIHDEIIFEI 753

Query: 637 PDTDEFNA---SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            D  E        +  +M   P     +P++AEG    R+ 
Sbjct: 754 DDDPEIVVAAEKQIKQVMEQPPVPGFPVPIEAEGSVGYRWG 794


>gi|15838882|ref|NP_299570.1| hypothetical protein XF2291 [Xylella fastidiosa 9a5c]
 gi|9107455|gb|AAF85090.1|AE004041_2 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 252

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 106/258 (41%), Positives = 134/258 (51%), Gaps = 13/258 (5%)

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           +TK+QR IGKV ELALGY GG  AF   A+   ++L   A        P   ++A     
Sbjct: 1   MTKEQRQIGKVQELALGYGGGVGAFAAFAALYHIDLEAMAAQ--AVFPPLLLQEATELLE 58

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
           W + NH            AC+  K+AWR  H  ++  W  L  A    I + +       
Sbjct: 59  WTKANHRPTFDLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETT----- 113

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKL 597
                + ++  +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL
Sbjct: 114 HTCCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKL 173

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P W
Sbjct: 174 VENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPW 233

Query: 658 AKGLPLKAEGYESKRYRK 675
           A+GLPL AEG+++ RYRK
Sbjct: 234 AEGLPLAAEGFDTYRYRK 251


>gi|332642872|gb|AEE76393.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1049

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 109/408 (26%), Gaps = 93/408 (22%)

Query: 277  FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                          +  L        DGR+  +L     + TGR S      QN P    
Sbjct: 720  LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 773

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   IAS G  L+VAD   +E R+LA +A 
Sbjct: 774  ---------------------ALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLAS 812

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +   +AF  G D +  T    +      V   +                     +    
Sbjct: 813  CESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEV------------------LLEWHPQ 854

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G        L    ++        NF     +     + +        +     W    
Sbjct: 855  PGQEKPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDR 914

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              V +         ++ I+ G  +                          GR+  + +  
Sbjct: 915  QEVRKWQ---ELRKKEAIQKGYVLTLL-----------------------GRARKFPEYR 948

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628
            +           + R            VQ  + D+    M+         + G+ ++L V
Sbjct: 949  S-----RAQKNHIERAAINTP------VQGSAADVAMCAMLEISNNQRLKELGWKLLLQV 997

Query: 629  HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673
            HDE++ E P     NA  +  + M+          + L  +   ++ +
Sbjct: 998  HDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNW 1045



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 96/343 (27%), Gaps = 76/343 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55
             D E  S ID+         +   +I F+        F D    +W D    +   +  
Sbjct: 285 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 340

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108
             K   E++ +  V HN  F+  +++      I +  +   T+ +AR            +
Sbjct: 341 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 397

Query: 109 LKAV---------------GEALKLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHRE 152
           L+A+                E     S K   GK +L     +G+       +      E
Sbjct: 398 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQM--E 455

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQ 190
               +  Y   D   T ++++ ++                            Q    L  
Sbjct: 456 DREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLA 515

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF- 244
            +   G  VD      +  +   E+            +        +     +L+   F 
Sbjct: 516 KMESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFG 575

Query: 245 ------LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNR 280
                  +  L  E L +     +V+   KK   +   +  +R
Sbjct: 576 GISNSCNDEDLPYEKLFKVPNVDKVIEEGKKRATKFRNIKLHR 618


>gi|42565057|ref|NP_188690.3| POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding /
            DNA-directed DNA polymerase/ nucleic acid binding
            [Arabidopsis thaliana]
 gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana]
 gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana]
 gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana]
 gi|332642871|gb|AEE76392.1| polymerase gamma 1 [Arabidopsis thaliana]
          Length = 1034

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 109/408 (26%), Gaps = 93/408 (22%)

Query: 277  FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                          +  L        DGR+  +L     + TGR S      QN P    
Sbjct: 705  LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 758

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   IAS G  L+VAD   +E R+LA +A 
Sbjct: 759  ---------------------ALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLAS 797

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +   +AF  G D +  T    +      V   +                     +    
Sbjct: 798  CESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEV------------------LLEWHPQ 839

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G        L    ++        NF     +     + +        +     W    
Sbjct: 840  PGQEKPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDR 899

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              V +         ++ I+ G  +                          GR+  + +  
Sbjct: 900  QEVRKWQ---ELRKKEAIQKGYVLTLL-----------------------GRARKFPEYR 933

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628
            +           + R            VQ  + D+    M+         + G+ ++L V
Sbjct: 934  S-----RAQKNHIERAAINTP------VQGSAADVAMCAMLEISNNQRLKELGWKLLLQV 982

Query: 629  HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673
            HDE++ E P     NA  +  + M+          + L  +   ++ +
Sbjct: 983  HDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNW 1030



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 96/343 (27%), Gaps = 76/343 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55
             D E  S ID+         +   +I F+        F D    +W D    +   +  
Sbjct: 270 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 325

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108
             K   E++ +  V HN  F+  +++      I +  +   T+ +AR            +
Sbjct: 326 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 382

Query: 109 LKAV---------------GEALKLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHRE 152
           L+A+                E     S K   GK +L     +G+       +      E
Sbjct: 383 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQM--E 440

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQ 190
               +  Y   D   T ++++ ++                            Q    L  
Sbjct: 441 DREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLA 500

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF- 244
            +   G  VD      +  +   E+            +        +     +L+   F 
Sbjct: 501 KMESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFG 560

Query: 245 ------LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNR 280
                  +  L  E L +     +V+   KK   +   +  +R
Sbjct: 561 GISNSCNDEDLPYEKLFKVPNVDKVIEEGKKRATKFRNIKLHR 603


>gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group]
          Length = 1028

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 91/773 (11%), Positives = 202/773 (26%), Gaps = 126/773 (16%)

Query: 5    FIDFETRSPIDLTKCGICKYAEDVCVILFAFG---------FDDHPVELWD--CVHDPVM 53
              D E  + ID+ +           VI F+           F +    +W         +
Sbjct: 274  ACDTE-VANIDVKEETP---VGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGGRDV 329

Query: 54   PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106
                    E+  +  V HN  F+  V++ C    I +  +   T+ LAR           
Sbjct: 330  LMEFAPFFEDPSIKKVWHNYSFDNHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 386

Query: 107  SALKAVGEALKLSSQKMEEGKELIA------RFCKGETHECLYDRNKPNHR------EAW 154
             +L+ +    ++ +  +++  +            K         +            E  
Sbjct: 387  YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKKVRKNGSEGKTISIEPVEKLQREDR 446

Query: 155  RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194
             L+  Y   D   T ++++ L+                          +    L   +  
Sbjct: 447  ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 506

Query: 195  RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244
             G  VD A    + +   VER     +               +     +++   F     
Sbjct: 507  EGMLVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKN 566

Query: 245  -LETGLHLE-DLT-------------ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              + G       T             + T +        +            + +++  L
Sbjct: 567  RNKPGETWPQSKTFKVPNDESIATEGKKTSKSRTIKLFTIVEDLKLFTTEGKKTTKTGWL 626

Query: 290  KL--NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
            K+  + L                 G       S    P Q++   S      +       
Sbjct: 627  KVRGDVLWSLAGKIPTDHIYKIDDGQEFDEDGSSVELPEQDIENTSPYGTAYEAFGGGKK 686

Query: 348  TSITSDP----DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                            I   +   +I  +G + +      I   +       +   +   
Sbjct: 687  GREACHAIAALCEAFSIDKLISGFIIPLQGDR-ISCKEGRIHCSLNINTETGRLSARTPN 745

Query: 404  TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN--- 460
                  +         A      +   +    +L L         + M        +   
Sbjct: 746  LQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHS 805

Query: 461  --TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER-----VKKAWRQK 513
                        A EE +    +     ++ P   +     G    +        A+ + 
Sbjct: 806  RTAMNMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDTFGAERRKAKMLNFSIAYGKT 865

Query: 514  HSRVSELWNELHQAFEQTIE----NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
               +S+ WN   +    T++    + K + A +++   L   K +     +    GRS  
Sbjct: 866  AVGLSQDWNVEVREARDTLKLWYRDRKEVSAWQKKQKALALEKCE-----VYTLLGRSRQ 920

Query: 570  YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYD 623
            + ++ +             R             Q  + D+    M+   +       G+ 
Sbjct: 921  FPNMTHAGPGQKGHV---ERAAINAPG------QGSAADVAMCAMLEIERNARLKELGWR 971

Query: 624  IVLTVHDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E P ++ E   S++   M+     +    + L  +   +K +
Sbjct: 972  LLLQVHDEVILEGPTESAEEAKSIVVECMSKPFYGTNILKVDLAVDAKYAKSW 1024


>gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1047

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 63/399 (15%), Positives = 111/399 (27%), Gaps = 93/399 (23%)

Query: 286  SAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                 +  L        DGR+  +L     + TGR S      QN P             
Sbjct: 727  LISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP------------- 771

Query: 344  THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                         L+     +R   +AS G  LVVAD   +E R+LA + G +  ++AF+
Sbjct: 772  ------------ALEKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFK 819

Query: 404  TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
             G D +  T    +      V   Q                     +     G +     
Sbjct: 820  AGGDFHSRTAMNMYPHIREAVENGQV------------------ILEWHPQPGEDKPPVP 861

Query: 464  HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             L     +        NF     +     + +        +   K W      V +    
Sbjct: 862  LLKDAFGSERRKAKMLNFSIAYGKTAIGLSRDWKVSVEEAQDTVKLWYNDRQEVRKWQ-- 919

Query: 524  LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
              +  ++ IE+G                             GRS  +    +        
Sbjct: 920  -ERRKKEAIEDGYVRTLL-----------------------GRSRRFPRYKS-----RAQ 950

Query: 584  TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETP 637
               + R            VQ  + D+    M+  +      K G+ ++L +HDE++ E P
Sbjct: 951  KNHIQRAAINTP------VQGSAADVAMCAMLEISTNQQLKKLGWRLLLQIHDEVILEGP 1004

Query: 638  DTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673
                  A  +    M+          + L  +   ++ +
Sbjct: 1005 IESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNW 1043



 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 96/354 (27%), Gaps = 72/354 (20%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55
             D E    +   +       +   +I F+        F      +W D    +   +  
Sbjct: 287 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGYGKSCIWVDVLGENGREVLA 342

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------PSAL 109
             K   E++ +  V HN  F+  +++    ++I       T+ +AR            +L
Sbjct: 343 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIEGGYSL 400

Query: 110 KAV---------------GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           +A+                + L   S K   GK  + +         +    +    E  
Sbjct: 401 EALTSDPKVLGGTQTKEEADFLGKISMKTIFGKRKLKKDGSEGKMVVIPPVEELQR-EDR 459

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSK----------------------EQELWYLDQTI 192
             +  Y   D   T ++++ +                             +    L   +
Sbjct: 460 EAWISYSALDAISTLKLYESMTKKLQMMDWRLDGKPVLERTMLDFYHEFWRPFGELLVKM 519

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF--- 244
              G  VD      + ++   E+        +            +     +L+   F   
Sbjct: 520 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGI 579

Query: 245 ----LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
                   L +E L +     +V+   KK   +   +  +R+  S  +   L  
Sbjct: 580 SNSVNGEVLPVEKLFKIPNIDKVIEVGKKTATKFRNIKLHRISDSPLSTENLTA 633


>gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 115/409 (28%), Gaps = 95/409 (23%)

Query: 277 FNNRMRASRSAVLKLNTLVE---AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
                  +      +  L        SDGR+  +L     + TGR S      QN P   
Sbjct: 463 LCEVASINTLLSNFIEPLQGNDIKSASDGRVHCSLNIN--TETGRLSARRPSLQNQP--- 517

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                  L+     +R   +A+ GK LVVAD   +E R+LA +A
Sbjct: 518 ----------------------ALEKDRYKIRQAFVAAPGKSLVVADYGQLELRLLAHLA 555

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
             +    AF+ G D +  T    +      V K+                     + +  
Sbjct: 556 DCKSMKAAFKAGGDFHSRTAMNMYPHVREAVEKE---------------------RVLLE 594

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                      L     +        NF     +     A +        +     W   
Sbjct: 595 WESHGKPPAPLLKDIFGSERRKAKMLNFSIAYGKTAMGLAKDWKVKVDEAKATVDLWYSD 654

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              V     E  Q                              +L +    GR+    D+
Sbjct: 655 RPEVLAWQKERKQEAHT--------------------------SLRVHTLLGRARHLPDI 688

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLT 627
            ++ + L +    + R            VQ  + D+    M+   +       G+ ++L 
Sbjct: 689 NSSNALLRSH---MERAAINTP------VQGSAADVAMCAMLEINRNSKLRELGWKLLLQ 739

Query: 628 VHDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
           VHDE++ E P ++ +    ++   M           + L  +G  ++ +
Sbjct: 740 VHDEVILEGPSESAQEAKELVIKSMMYPFNGENFLDVELVVDGDYAESW 788



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 83/301 (27%), Gaps = 67/301 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELWD--CVHDPVMPQV 56
             D E  + ID+ K           +  F+        F +    LW         + +V
Sbjct: 26  ACDTE-VAEIDVKKESP---VGHGRMTCFSIYCGPSANFGNGKNRLWVDVLDGGDGILEV 81

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-------PSAL 109
            +   E+  +  V HN  F++ +L     +  P   +  T+ LAR +           +L
Sbjct: 82  FRRYFEDPSIKKVWHNYSFDKHILSRH-GIH-PQGFYADTMHLARLHDSARRGAKGGYSL 139

Query: 110 KAVGE-------ALKLSSQKM-------EEGKELIARFCKGETHECLYDRNKPNHR---- 151
           + +          L   +++        +  KEL  +    +       +  P       
Sbjct: 140 EVLSADEKVMDGYLGHLTEEDDITLVGKKSMKELFGKANLKKDGSPGKIKTIPPVDELQR 199

Query: 152 --EAWRLFGEYCKGDVTVTREIFKRLEPLS---------------------SKEQELWYL 188
             E    +  Y   D   T  +F  L+                           +    +
Sbjct: 200 DGELRDAWIHYSTFDTVCTWRLFVSLQHKLSNTPWNVVDLKEKGSMYDFYEKYWRPFGEV 259

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL-----VSSSRCLEKLKTWL 243
              +   G  VD     T+ ++   ++                   + +     +++ +L
Sbjct: 260 LVQMEADGMLVDCDHLATVEKVARAQQEISVSRFRKWAAKYCPDAAMMNVGSDAQIRQFL 319

Query: 244 F 244
           F
Sbjct: 320 F 320


>gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1088

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 109/408 (26%), Gaps = 93/408 (22%)

Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                         +  L        DGR+  +L     + TGR S      QN P    
Sbjct: 670 LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 723

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                 L+     +R   IAS G  L+VAD   +E R+LA +A 
Sbjct: 724 ---------------------ALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLAS 762

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            +   +AF  G D +  T    +      V   +                     +    
Sbjct: 763 CESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEV------------------LLEWHPQ 804

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G        L    ++        NF     +     + +        +     W    
Sbjct: 805 PGQEKPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDR 864

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +         ++ I+ G  +                          GR+  + +  
Sbjct: 865 QEVRKWQ---ELRKKEAIQKGYVLTLL-----------------------GRARKFPEYR 898

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628
           +           + R            VQ  + D+    M+         + G+ ++L V
Sbjct: 899 S-----RAQKNHIERAAINTP------VQGSAADVAMCAMLEISNNQRLKELGWKLLLQV 947

Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673
           HDE++ E P     NA  +  + M+          + L  +   ++ +
Sbjct: 948 HDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNW 995



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 96/343 (27%), Gaps = 76/343 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55
             D E  S ID+         +   +I F+        F D    +W D    +   +  
Sbjct: 235 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 290

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108
             K   E++ +  V HN  F+  +++      I +  +   T+ +AR            +
Sbjct: 291 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 347

Query: 109 LKAV---------------GEALKLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHRE 152
           L+A+                E     S K   GK +L     +G+       +      E
Sbjct: 348 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQM--E 405

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQ 190
               +  Y   D   T ++++ ++                            Q    L  
Sbjct: 406 DREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLA 465

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF- 244
            +   G  VD      +  +   E+            +        +     +L+   F 
Sbjct: 466 KMESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFFG 525

Query: 245 ------LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNR 280
                  +  L  E L +     +V+   KK   +   +  +R
Sbjct: 526 GISNSCNDEDLPYEKLFKVPNVDKVIEEGKKRATKFRNIKLHR 568


>gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana]
 gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana]
 gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana]
          Length = 1049

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 110/408 (26%), Gaps = 93/408 (22%)

Query: 277  FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                          +  L        DGR+  +L     + TGR S      QN P    
Sbjct: 720  LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 773

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   +AS G  LVVAD   +E R+LA + G
Sbjct: 774  ---------------------ALEKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTG 812

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +  ++AF+ G D +  T    +      V   Q                     +    
Sbjct: 813  CKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQV------------------ILEWHPE 854

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G +      L     +        NF     +     + +        +     W    
Sbjct: 855  PGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDR 914

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              V +         ++ IE+G  +                          GRS  +    
Sbjct: 915  QEVRKWQ---EMRKKEAIEDGYVLTLL-----------------------GRSRRFPASK 948

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
            +           + R            VQ  + D+    M+  +      K G+ ++L +
Sbjct: 949  S-----RAQRNHIQRAAINTP------VQGSAADVAMCAMLEISINQQLKKLGWRLLLQI 997

Query: 629  HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673
            HDE++ E P      A  +    M+          + L  +   ++ +
Sbjct: 998  HDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNW 1045



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 97/353 (27%), Gaps = 71/353 (20%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55
             D E    +   +       +   +I F+        F +    +W D    +   +  
Sbjct: 291 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLA 346

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------PSAL 109
             K   E++ +  V HN  F+  +++    ++I       T+ +AR            +L
Sbjct: 347 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIKGGYSL 404

Query: 110 KAV---------------GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           +A+                E L   S K   GK  + +         +    +    E  
Sbjct: 405 EALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIPPVEELQR-EDR 463

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQTI 192
             +  Y   D   T ++++ +                             +    L   +
Sbjct: 464 EAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKM 523

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF--- 244
              G  VD      + ++   E+        +            +     +L+   F   
Sbjct: 524 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGI 583

Query: 245 ---LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
               +  L +E L +     +V+   KK   +   +  +R+  S  +      
Sbjct: 584 SNSHDEVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHRISDSPLSTENFTA 636


>gi|22330154|ref|NP_175498.2| POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA
            polymerase [Arabidopsis thaliana]
 gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana]
          Length = 1050

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 110/408 (26%), Gaps = 93/408 (22%)

Query: 277  FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                          +  L        DGR+  +L     + TGR S      QN P    
Sbjct: 721  LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 774

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   +AS G  LVVAD   +E R+LA + G
Sbjct: 775  ---------------------ALEKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTG 813

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +  ++AF+ G D +  T    +      V   Q                     +    
Sbjct: 814  CKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQV------------------ILEWHPE 855

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G +      L     +        NF     +     + +        +     W    
Sbjct: 856  PGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDR 915

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              V +         ++ IE+G  +                          GRS  +    
Sbjct: 916  QEVRKWQ---EMRKKEAIEDGYVLTLL-----------------------GRSRRFPASK 949

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTV 628
            +           + R            VQ  + D+    M+  +      K G+ ++L +
Sbjct: 950  S-----RAQRNHIQRAAINTP------VQGSAADVAMCAMLEISINQQLKKLGWRLLLQI 998

Query: 629  HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673
            HDE++ E P      A  +    M+          + L  +   ++ +
Sbjct: 999  HDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNW 1046



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 97/353 (27%), Gaps = 71/353 (20%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55
             D E    +   +       +   +I F+        F +    +W D    +   +  
Sbjct: 292 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLA 347

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------PSAL 109
             K   E++ +  V HN  F+  +++    ++I       T+ +AR            +L
Sbjct: 348 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIKGGYSL 405

Query: 110 KAV---------------GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           +A+                E L   S K   GK  + +         +    +    E  
Sbjct: 406 EALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIPPVEELQR-EDR 464

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQTI 192
             +  Y   D   T ++++ +                             +    L   +
Sbjct: 465 EAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKM 524

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF--- 244
              G  VD      + ++   E+        +            +     +L+   F   
Sbjct: 525 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGI 584

Query: 245 ---LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
               +  L +E L +     +V+   KK   +   +  +R+  S  +      
Sbjct: 585 SNSHDEVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHRISDSPLSTENFTA 637


>gi|330802475|ref|XP_003289242.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
 gi|325080687|gb|EGC34232.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum]
          Length = 1200

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 83/694 (11%), Positives = 189/694 (27%), Gaps = 167/694 (24%)

Query: 51   PVMPQVLKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
                + + E LEN  +  +++N   +        +   +         + A         
Sbjct: 556  EEKLKFMVEILENGLIKKISYNCS-DGYKPFIKQYPY-MKPINSFDIKIAAWLLNSDGGN 613

Query: 110  KAVGEALKLSSQKMEEGKEL--IARFCKGETHECLYDRNKPNHREAWRLFGEYCK--GDV 165
                        K E  K +  I+     +       +      E  +    Y     D+
Sbjct: 614  NGYSFEKVQEYGKDESIKTIQNISNRNIMQNQSEKIKKLINEENEFSKENTNYGSFSQDI 673

Query: 166  TVTREIFKRLEPLSSKEQELW---------YLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              + +I+  L+ L   +   +          L   +   G  ++  + +   +++D +  
Sbjct: 674  VYSLKIYLVLKNLLYDKDLSYNFIEEMSVVSLISKMELYGILLETKILNQYKKLLDEKSA 733

Query: 217  KLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-----HLEDLTETTCQRVLSSNKKLTP 271
             L    E      + + R + ++   ++ +  L         + + +   + + N     
Sbjct: 734  NL---CEYFRDNNLLNPRSIPQVTKVIYQDLKLKLPHPPPTKVDKKSLNEIKALNPNQEE 790

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ-------------FLGASRTGR 318
                +   R    +     ++  +E  +S        Q                 + TGR
Sbjct: 791  FINNLLIYRN-LEKINKTYISAYLELADSYYDKFHQNQNESNKKAFIKCDWLQCGTSTGR 849

Query: 319  WSGCVFPPQNLPRPSRSH-------------------EELDQIITHLPTSITSDPDPLQI 359
             S C    QN+ R +                        ++           +       
Sbjct: 850  LSSCNPNMQNVCRNTSIISFDDEEDQASSQIDDLFLMTHIEDDQNQNQNHNQNQNQNQNQ 909

Query: 360  ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
             +  +R   I+ +G  ++  D   IE RV++  + ++  +  F   +D+     ++  N 
Sbjct: 910  ETINIRDAFISRDGYTMLAYDYNQIELRVMSHFSNDKHLINYFNNNQDVIRRMASKLLNK 969

Query: 420  APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                VT D+R   K +   +                G+   +                  
Sbjct: 970  EINDVTTDEREKTKRVVYGIM--------------YGIGPQSL----------------- 998

Query: 480  NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                 +A E +   + ++  ++S        + +Q         
Sbjct: 999  -------------GKLLKISTSAAELLINNFYKEFPQISSFITTTKNSLKQ--------- 1036

Query: 540  ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                            N+  +   SGR     ++ N+                   +   
Sbjct: 1037 ----------------NDPEVRTISGRIRKLGEIKNSFD-----------ISIAKRRSVN 1069

Query: 600  NIVQAVSRDILAEGMMNATKAGYDI------------------------VLTVHDEIVCE 635
             I+Q  S DI+ + M+       DI                        +L +HDE++ E
Sbjct: 1070 TIIQGSSADIIKKSMVKINNFFGDICSIFNNNNNNNNSNNNNNQISPRFLLQIHDELIFE 1129

Query: 636  TPD--TDEFNASM-LYHLMTSNPSWAKGLPLKAE 666
             P    +E    + + +LM S    +K   LK +
Sbjct: 1130 VPTFLIEEHRVDLYIKYLMESV---SKDFNLKVD 1160


>gi|3063700|emb|CAA18591.1| putative protein [Arabidopsis thaliana]
 gi|7270174|emb|CAB79987.1| putative protein [Arabidopsis thaliana]
          Length = 1548

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 88/707 (12%), Positives = 180/707 (25%), Gaps = 176/707 (24%)

Query: 29   CVILFAFGFDDHPVELWDCVHDPVMPQVL--KEALENTDVTI--VA--HN----SYFERT 78
             +   A  ++  PV   +   D    + +  ++ +E+  +    V   HN          
Sbjct: 933  EIHGIAICWNCSPVYYVNLNKDLPNLECVEKQKLIEDAVIGKSEVLASHNMLDVIKSRWN 992

Query: 79   VLKACFNLDIPIHRW---ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE------- 128
             +       +         CT    R N        + +   L    +            
Sbjct: 993  KISKIMGNVLKSPAISIQRCT----RLNLPEGIRDELVDGSWLMMPPLHTSHTIDMSIVI 1048

Query: 129  LIARFCK-----GETHECLYDRNKPNHREAWRL-----------FGEYCKGDVTVTREIF 172
             I    +         + +  R  P   EA                  C   V  TR + 
Sbjct: 1049 WILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQIRRVAHNGCCRRVAQTRALC 1108

Query: 173  KRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
              L  +           + E  L  +   +   G  +D+        I+  +   L+++ 
Sbjct: 1109 SALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKKA 1168

Query: 223  ESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE---TTCQRVLSSNKKLTPQAIQV 276
              L      S      +   LF +  L +       +   +T +  L             
Sbjct: 1169 FELAGMT-FSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLL---------- 1217

Query: 277  FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                  +              +  D RL   L                            
Sbjct: 1218 ----RYSEWLIAFPYIAFCFFIIKDNRLFELLSASV-----------------------E 1250

Query: 337  EELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGE 395
             E++  +      ++SD D  +I +   R   +   E   L+ AD + IE R++A  + +
Sbjct: 1251 HEVEFKLDKNGRDVSSDADRYKINA---RDFFVPTQENWLLLTADYSQIELRLMAHFSRD 1307

Query: 396  QWKLKA-FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
               +    +   D++    A+    A   V+   R   K +   + Y  G          
Sbjct: 1308 SSLISKLSQPEGDVFTMIAAKWTGKAEDSVSPHDRDQTKRLIYGILYGMG---------- 1357

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                                  A +        +   ++++   
Sbjct: 1358 ----------------------------------ANRLAEQLECTSDEAKEKIRSFKSSF 1383

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              V+   NE     ++       +         ++ +  +   + +    GR      + 
Sbjct: 1384 PAVTSWLNETISFCQEKGWGCYRLFPLLFVLNAVLCVPLNHIFIYIQTLKGRRRFLSKIK 1443

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---------------- 618
               +   +   +  R+         ++ Q  + DI+   M+N                  
Sbjct: 1444 FGNAKEKS---KAQRQA------VNSMCQGSAADIIKIAMINIYSAIAEDVDTAASSSSS 1494

Query: 619  -------KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSW 657
                   K    I+L VHDE+V E   +    A+ML    M +  S 
Sbjct: 1495 ETRFHMLKGRCRILLQVHDELVLEVDPSYVKLAAMLLQTSMENAVSL 1541


>gi|229020744|ref|ZP_04177467.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
 gi|229026983|ref|ZP_04183301.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228734300|gb|EEL84976.1| DNA-directed DNA polymerase [Bacillus cereus AH1272]
 gi|228740545|gb|EEL90820.1| DNA-directed DNA polymerase [Bacillus cereus AH1273]
          Length = 808

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 93/761 (12%), Positives = 191/761 (25%), Gaps = 211/761 (27%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLKEAL-ENTDVTIVAH 71
           +    +   A +  V+  +       V             +  +L E L +N  V  +A 
Sbjct: 143 ICTVSLSAAAHESRVVPISHKV--GQVFEPSMDRGEARKLVLDLLDEYLFKNEKVLKIAV 200

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARS----------NGLPSALKAVGEALKLSSQ 121
           N  FE           +   +    L++                P   K         + 
Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPK--KPTSGWGLKPAT 255

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF--------- 172
           K   G  +       + ++  +         +      Y   D     + +         
Sbjct: 256 KHIFGVTMNDFAALLKKYKVDF---FDEIDASKGEGLLYSAEDADYALQHYEYWSQIAAQ 312

Query: 173 -KRLEPLSS-KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
             R E      E     +   +   G   D  LA    Q  ++ + +  + ++ +     
Sbjct: 313 IPRYEDWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETF 372

Query: 231 S------SSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNK-------------- 267
           +       S    ++K+ +F    + +        +  Q  L                  
Sbjct: 373 NIDINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASLDQEALIDMAFMLENKLNDIDEEK 432

Query: 268 ----------------------------------KLTPQAIQVFNNRMRASRSAVLKLNT 293
                                             +  P   Q      +  +        
Sbjct: 433 YLSISLPENWESIDPDKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQ-KYTTL 491

Query: 294 LVEAMNSDGRL------RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           L   +    +       R    +   + TGR +      QN+PRP     +         
Sbjct: 492 LSSHIIGREKYLNFMSGRIHAGYSPFTETGRLNSFNPNGQNVPRPDNDEFK--------- 542

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           +R+  +   GK L   D +G E R++AW +G++  ++ F TG D
Sbjct: 543 ----------------IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGD 586

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T +     + A++ K +R   K     + Y G   A Q                  
Sbjct: 587 MHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQ------------------ 628

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                  +           C ++  A +  + R+ E   ++   
Sbjct: 629 --------------------FTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLE 668

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +                             +    G   +   + +            
Sbjct: 669 ARE--------------------------QGYVQTIYGYMRLLPGINSAN---RRDRGSA 699

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----------GYDIVLTVHDEIVCET 636
            R+           VQ  + DI+ +      ++             D++  +HDEI+ E 
Sbjct: 700 ERQAANTP------VQGSAADIMKKVQNEIYESIGKQEGVLAHGSADMIAQIHDEIIFEI 753

Query: 637 PDTDEFNA---SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            D  E        +  +M   P     +P++AEG    R+ 
Sbjct: 754 DDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEGSVGYRWG 794


>gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 552

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 66/440 (15%), Positives = 140/440 (31%), Gaps = 68/440 (15%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70
            S I L+   +    +D  +       +     + D  +   +   L      +   ++ 
Sbjct: 176 TSKIKLSAETVVHIIDDKII----IAPNRSKAFICDVTNASDLVFDLI-----STTKMIC 226

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           ++   +        N++I + +       +           +     LSS  + E  E  
Sbjct: 227 YDVK-DTLHKLNALNINIVVDKVFDIKQASFLIDP------LIRDRSLSSIVVGEIDESN 279

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
                         + +    +                       +  +  +  L  L  
Sbjct: 280 PAVVITAIWNAYDTQMEKFKNDKI-------------------LYKIATDFDFPLAPLLF 320

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET--- 247
            +  RG  ++ +    ++  +  +  +L Q++  +      +     +L   LF++    
Sbjct: 321 KMEKRGVKINTSYLADMSHEIGKKYEELQQKIFDIAGY-NFNIASPAQLSDMLFIKLQLP 379

Query: 248 --GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
             G+       +T Q+ L+  + L P    +   R   ++     ++ L + ++ + RL 
Sbjct: 380 TTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTR-ELAKLKNTYVDALPKLVDKNYRLH 438

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
            T        TGR S      QN+P  S                          +   +R
Sbjct: 439 TTFNQDVV-STGRLSSTHPNLQNIPIRS-------------------------TLGKKIR 472

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
           +  IA E   LV AD +  E R+ A MAG++  +  F    D++  T +  + +   QVT
Sbjct: 473 NAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQVT 532

Query: 426 KDQRAIGKVMELALGYQGGA 445
            +QR   KV+   + Y    
Sbjct: 533 SNQRRNAKVINFGVLYGMSP 552


>gi|218186696|gb|EEC69123.1| hypothetical protein OsI_38041 [Oryza sativa Indica Group]
          Length = 1986

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 85/714 (11%), Positives = 170/714 (23%), Gaps = 215/714 (30%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ------- 55
                D        +             ++  A  +++ PV   +   D +M         
Sbjct: 1387 EFSFDLH-YVKKSIKSSSTY-----FDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIEM 1440

Query: 56   ---------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
                      + E +    V  +  N  F+   LK      +   R      L+R +   
Sbjct: 1441 WDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKYPC---VSCQR------LSRLH--- 1488

Query: 107  SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
                     L     K  E  + +  F +  +     D         W         ++ 
Sbjct: 1489 ---------LDYKMLKNVEVLDNLYVFLQPVSVHSGLDICL-VAWVLWPDEESKTVPNLE 1538

Query: 167  VTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
             TR +   L  L   +            L  +   +   G   D+        I+  +  
Sbjct: 1539 KTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLK 1598

Query: 217  KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED---LTE---TTCQRVLSSNKKLT 270
            +L++E   L      S      +   L+    L +       +   +T ++ L   +   
Sbjct: 1599 ELEKEAYKLAG-KSFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLRDQH 1657

Query: 271  PQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQ 327
            P    +  +R  A         + +  +  +   R      +   ++ TGR S      Q
Sbjct: 1658 PIISVIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQ 1717

Query: 328  NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
                                                        E   LV AD + IE R
Sbjct: 1718 --------------------------------------------ENWLLVTADYSQIELR 1733

Query: 388  VLAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
            ++A  + +   ++   +   D++    +R    A + +   +R   K     +       
Sbjct: 1734 LMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAESLICSKERETTKRFIYGIL------ 1787

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                                                          A +         + 
Sbjct: 1788 --------------------------------------YGMGANSLAEQLECSPEDAAQK 1809

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
             +++++    VS     LH+A       G                             GR
Sbjct: 1810 IQSFKRFFPGVSSW---LHEAVASCRHKGYVETL-----------------------MGR 1843

Query: 567  SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------- 618
                  +    S       +  R+         +I Q  + DI+   M+           
Sbjct: 1844 RRFLSKITAGNSKEK---AKAQRQA------VNSICQGSAADIIKVAMIKVHSAITNGST 1894

Query: 619  ------------------KAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTS 653
                              +    ++L VHDE+V E           +L  +M +
Sbjct: 1895 VGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLLQTVMEN 1948


>gi|225430047|ref|XP_002281624.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2100

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/722 (12%), Positives = 172/722 (23%), Gaps = 226/722 (31%)

Query: 29   CVILFAFGFDDHPVELWDCVHD--------------------PVMPQ------------- 55
             +   A  +++ PV   +   D                    P +               
Sbjct: 1470 EIHGIAICWENSPVYYINLPKDLLCSDERKNIYLTMNVSDDKPNILDANHRLEAAKWRWS 1529

Query: 56   VLKEALENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICTLVL-----ARSN 103
             + + +   DV     N   +  VLK          +L++ +     T+ L     +   
Sbjct: 1530 KVGKIMGKKDVRKFTWNLKVQIQVLKNPAVSIQKFGSLNLAMR----TMGLELIDNSYLM 1585

Query: 104  GLP----SALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP--NHREAWRL 156
              P      L       +    ++      L     K  + E     N+      +  R 
Sbjct: 1586 LSPVYIVDGLDMCIVTWILWPDEERSSNPNLEKEVRKRLSSEAAAAANRSGRWKNQTRRA 1645

Query: 157  FGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHT 206
                C   V  TR +   L  L             E  L  +   +   G  VD+     
Sbjct: 1646 AHNGCCRRVAQTRALCSVLWKLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQ 1705

Query: 207  LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE---TTCQ 260
               ++  +   L++E   L      S      +   L+    L +    +  +   +T +
Sbjct: 1706 ARNVLGKKLRHLEKEAYELAGMT-FSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDK 1764

Query: 261  RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFLGASRT 316
              L   +   P    +  +R  A        +      +        L G      ++ T
Sbjct: 1765 HCLDLLRHEHPIIPVIKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQ-TSTAT 1823

Query: 317  GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
            GR S      Q                                            E   L
Sbjct: 1824 GRLSMEEPNLQ--------------------------------------------ENWLL 1839

Query: 377  VVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
            + AD + IE R++A  + +    +   +   D++    A+      + V   +R   K +
Sbjct: 1840 LTADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRL 1899

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
               +                                                     A +
Sbjct: 1900 VYGIL--------------------------------------------YGMGANTLAKQ 1915

Query: 496  DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                    E   +++R     V+   +          +     +  ++R +  +     K
Sbjct: 1916 LECSLGEAEEKIRSFRSSFPGVASWLH--EAVACCCKKGYVKTLKGRKRFLSKIKFGTSK 1973

Query: 556  NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
              L                           +  R+         +I Q  + DI+   M+
Sbjct: 1974 EKL---------------------------KARRQA------VNSICQGSAADIIKIAMI 2000

Query: 616  NAT-----------------------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651
            N                         K    I+L VHDE+V E   +    A +L    M
Sbjct: 2001 NIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKMTM 2060

Query: 652  TS 653
             +
Sbjct: 2061 EN 2062


>gi|157888638|emb|CAE47762.2| novel protein similar to humna DNA-directed polymerase theta (POLQ)
            [Danio rerio]
          Length = 2239

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/700 (12%), Positives = 191/700 (27%), Gaps = 140/700 (20%)

Query: 46   DCVHDPVMPQVLKEA---LE-NTDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLV 98
                   + + LK+    L+ ++ VT+      ++   L     L   +     +    +
Sbjct: 1602 PLDDTLTVEERLKQIQSCLQKDSSVTVT-----YDFIHLYKILLLACELAVRGTFEDPKI 1656

Query: 99   LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                    S  + +          M                     ++     EA +   
Sbjct: 1657 ACWLLDSSSKERTL--------HNMVTSFATEDLPLLEGISAGQGVQSLGIFGEASQPGR 1708

Query: 159  EYCKGDVTVTREIFKRLEPLSSKE----------QELWYLDQTINDRGYCVDVALAHTLN 208
                 +  +   +  +L  L  K+              Y    +   G    +A      
Sbjct: 1709 YRAAIESVLVFRVMTQLNCLLEKDGFLDVFKKVEMPTQYCLALLELNGIGFSIAECEAQK 1768

Query: 209  QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---------------- 252
             ++  + + L+ +   L      S    E +   LFLE  L                   
Sbjct: 1769 HVMQAKLSALESQAYQLAGHS-FSLTSPEDVAEVLFLELKLPPNGDLNGLKNKKTLGYTR 1827

Query: 253  --------DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL-------NTLVEA 297
                        +T + VL   K L P    +   R   +     K+             
Sbjct: 1828 RAGARIKLSKQFSTTKDVLEKLKPLHPLPGVILEWRRITNAL--TKVVFPLQREKKWHSH 1885

Query: 298  MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR----------------------S 335
            +  D R+    Q   A+  GR S      QN+P+                          
Sbjct: 1886 LKMD-RIHPISQSHTAT--GRVSFTEPNIQNVPKDFEIQMPTLIEESQTSQNGGSKMWCK 1942

Query: 336  HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
              ++++ +  L       PD     S  +R   +   G  ++  D + +E R+LA ++ +
Sbjct: 1943 RTKINRQLAPLLKVSDKSPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRD 2002

Query: 396  QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
            +  L    +G D++ +  A    V PA V  + R   K +   + Y  GAK+  +     
Sbjct: 2003 RRLLHVLNSGADVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKSLGE----- 2057

Query: 456  GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             + +          +    +   +NF R   +   ++      +G   +R     +  + 
Sbjct: 2058 QMGIEENDAACYIETFKSRYNGIQNFLRETVQKCGKNGYVKTLLGR--KRFLPGIKDSNV 2115

Query: 516  RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             +         A  Q +       A     +  + +++        +P+  S  +  +  
Sbjct: 2116 YIKS------HAERQAVNTTVQGSAADIVKLATINIQRRIEEAFPGVPT--SHQHPSIRL 2167

Query: 576  NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
               + N                                       G   +L +HDE++ E
Sbjct: 2168 GGRHRNQFRPL---------------------------------RGGYFILQLHDELIYE 2194

Query: 636  TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
              + D    + +    M S       + L+ +      + 
Sbjct: 2195 VAEEDVIQVAQIVKREMESVVKLY--VKLRVKVKVGPSWG 2232


>gi|118090791|ref|XP_420834.2| PREDICTED: similar to DNA polymerase N [Gallus gallus]
          Length = 530

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/583 (14%), Positives = 167/583 (28%), Gaps = 124/583 (21%)

Query: 54  PQVLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
            QVL + L    V ++  N+  F +TVL   +   I   +       +           +
Sbjct: 31  LQVLFQILRCK-VPVICFNAKDFLKTVL-QVYGSGISWKQVAD----SIVLDPR-----I 79

Query: 113 GEALKLSSQKMEEGKELIARFCKGETH-----ECLYDRNKPNHREAWRLFGEYCKGDVTV 167
              L  SS  +   + L+  F K  +      +    RN  +      L   Y    + +
Sbjct: 80  AAWLINSSDTVPSFECLLQYFEKSYSVETVNTDTGGLRNSRHQNLVVNLQKLYTIM-MGL 138

Query: 168 TREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
             ++  +         EL    +   +      VD       ++I+ +   +L++E   +
Sbjct: 139 AHDLQVQGLWKLFCTLELPLIKVLAVMETHKIHVDKQELKKTSEILGLRLKELEEEAHQI 198

Query: 226 TYGLVSSSRCLEKLKTWLFLETGL-----HLEDLT----ETTCQRVLSSNKKLTPQAIQV 276
                       +L+  LF +  L      +         +T + VLS  + L P    +
Sbjct: 199 AG-ERFLLTSSSQLREVLFEKLKLHTLCEKIPRTERQQVASTSEVVLSKLQDLHPLPKLM 257

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R    +     ++ L       G +  T    G + TGR S      Q + +     
Sbjct: 258 LEYRQ-VRKMKSTYVDGL-RTCMRKGFICPTWNQTG-TVTGRLSSKHPNIQGISKHPVRI 314

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +   I       +T  P          R+  ++ +G   + AD + IE R+LA ++ E 
Sbjct: 315 TKKQYIKGKEEEILTISP----------RALFVSKKGYTFLAADFSQIELRILADLSAEP 364

Query: 397 WKLKAFETGEDLYVTTY--ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             LK F+  E   + T   ++   +   QV +  R   K +                   
Sbjct: 365 ELLKLFQEPETTDIFTSLASQWKGIPSEQVKQTDREQAKRIV------------------ 406

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                     +           A              +++ QK+
Sbjct: 407 --------------------------YSVVYGAGKERLAECLGITPHEAGHFIESFMQKY 440

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            +V E      +   Q    G  +                          GR  +  ++ 
Sbjct: 441 KKVHEF---TKKTIGQCQNKGYVVSI-----------------------MGRKRLLANIN 474

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
           +    L T   Q  R+          +VQ  + D+    M+  
Sbjct: 475 SQDYKLRT---QAERQA------VNFVVQGSAADLCKMAMVEI 508


>gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
 gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1044

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/408 (14%), Positives = 110/408 (26%), Gaps = 93/408 (22%)

Query: 277  FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                          +  L        DGR+  +L     + TGR S      QN P    
Sbjct: 715  LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 768

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   IAS G  L+VAD   +E R+LA +A 
Sbjct: 769  ---------------------ALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLAS 807

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +   +AF  G D +  T    +      V   +                     +    
Sbjct: 808  CKSMKEAFIAGGDFHSRTAMNMYPHIREAVENGEV------------------LLEWHPQ 849

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G        L    ++        NF     +     + +        +     W    
Sbjct: 850  PGQEKPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSIEEAQDTVNLWYNDR 909

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              V +         ++ I+NG  +                          GR+  +    
Sbjct: 910  QEVRKWQ---ELRKKEAIQNGYVLTLL-----------------------GRARKFPVYR 943

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
            +           + R            VQ  + D+    M+  +K       G+ ++L +
Sbjct: 944  S-----RAQKNHIERAAINTP------VQGSAADVAMCAMLEISKNQRLKELGWKLLLQI 992

Query: 629  HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673
            HDE++ E P     NA  +  + M+          + L  +   ++ +
Sbjct: 993  HDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNW 1040



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 96/343 (27%), Gaps = 76/343 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55
             D E  S ID+         +   +I F+        F D    +W D    +   +  
Sbjct: 280 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 335

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108
             K   E++ +  V HN  F+  +++      I +  +   T+ +AR            +
Sbjct: 336 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 392

Query: 109 LKAV---------------GEALKLSSQKMEEGK-ELIARFCKGETHECLYDRNKPNHRE 152
           L+A+                E     S K   GK +L     +G+       +      E
Sbjct: 393 LEALTSDPRVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIPPVKELQM--E 450

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQ 190
               +  Y   D   T ++++ ++                            Q    L  
Sbjct: 451 DREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGNLISKQNMFDFYQEYWQPFGELLA 510

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF- 244
            +   G  VD      +  +   E+            +        +     +L+   F 
Sbjct: 511 KMESEGMLVDRDYLAQIEIVAKAEQEIAVSRFRSWASKHCPDAKHMNVGSDTQLRQLFFG 570

Query: 245 ------LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNR 280
                  +  L  E L +     +V+   KK   +   +  +R
Sbjct: 571 GISNSCNDEDLPYEKLFKVPNVDKVIEKGKKRATKFRNIKLHR 613


>gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group]
 gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group]
          Length = 1033

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/408 (14%), Positives = 109/408 (26%), Gaps = 91/408 (22%)

Query: 277  FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                    +     +  L        +GR+  +L     + TGR S      QN P    
Sbjct: 702  LCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNIN--TETGRLSARTPNLQNQP---- 755

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   +A+ G  L+VAD   +E R+LA +  
Sbjct: 756  ---------------------ALEKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTN 794

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +  L+AF+ G D +  T    +      V +                   K   +    
Sbjct: 795  CKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQ 836

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G +      L     A        NF     +     + +            K W +  
Sbjct: 837  PGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDR 896

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              VS    +      +  E                               GRS  + ++ 
Sbjct: 897  KEVSAWQKKQKAFALEKCEVY--------------------------TLLGRSRQFPNMT 930

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
            +             R            VQ  + D+    M+   +       G+ ++L V
Sbjct: 931  HAGPGQKGHV---ERAAINAP------VQGSAADVAMCAMLEIERNARLKELGWRLLLQV 981

Query: 629  HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673
            HDE++ E P      A  +    M+     +    + L  +   +K +
Sbjct: 982  HDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDLAVDAKYAKSW 1029


>gi|326426432|gb|EGD72002.1| hypothetical protein PTSG_00018 [Salpingoeca sp. ATCC 50818]
          Length = 830

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/572 (12%), Positives = 160/572 (27%), Gaps = 115/572 (20%)

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T V A       A   + +  +L             +             +  + 
Sbjct: 322 IAVRDTQVAAWLADPERAWDDMDDVFRL------------CQLRPVTRGAGDLGDSSASA 369

Query: 151 REAW--RLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHT 206
              W  +L   +      +   +    +       E    +L   +   G  +D      
Sbjct: 370 SSQWLHKLASRHAAAFDHLFARLRACDQAELYSRLEAPAIWLLAEMQVHGIHIDTETLKQ 429

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET----GLH----LEDLTETT 258
               +     +L+   E+L    +       +L+ +L+ +     G+           +T
Sbjct: 430 QRVQIQQCLAELEARAEALVGFKL-LLTSPLQLREYLYDQLQLHVGIPNFPRTPKGKLST 488

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
            +  L+  K        +  +R  A+R     ++ ++  +   G L        ++ +GR
Sbjct: 489 GEDALTLIKDRHELPNLLLLHRR-AARLLCTYIDGVLPHVTH-GMLHPEWLQ-TSAASGR 545

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
            S      Q++P    +                     L ++    R+  +A  G   V 
Sbjct: 546 VSCQQPNIQSVPLRETALR-------------------LDLLVVSPRAAYVAPGGCVYVS 586

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
            D   +E R+LA  + ++  +  F+  E           N  P+      R         
Sbjct: 587 LDWRQMELRLLAHFSEDEGLIALFQNQEAKAKA------NTPPSTANATSREE------- 633

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
               G +  F+ +A     +      + +      +      +           +     
Sbjct: 634 ---GGTSDPFKALA-----SKWFCVPVEQVTGRQRDQVKRCLYAFIYGSGALHLSKVLEV 685

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                +++ +A+R++H R+  L +++                          + + K   
Sbjct: 686 SVHEAKKLLQAFRRRHPRIQHLRDQV--------------------------LIRLKETG 719

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            +   S R   ++D         +      R           ++Q  + DI    M+N  
Sbjct: 720 FVSCLSRRRRYFKD---------SANDHSQRAA------FNFLLQGSAADICKAAMINLR 764

Query: 619 K------AGYDIVLTVHDEIVCETPDTDEFNA 644
           +          +V  +HDEI+ E P+ +    
Sbjct: 765 EFLRAKQMRSFMVAQLHDEIILECPEKEAKEV 796


>gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa]
          Length = 976

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/408 (14%), Positives = 109/408 (26%), Gaps = 91/408 (22%)

Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                   +     +  L        +GR+  +L     + TGR S      QN P    
Sbjct: 645 LCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNIN--TETGRLSARTPNLQNQP---- 698

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                 L+     +R   +A+ G  L+VAD   +E R+LA +  
Sbjct: 699 ---------------------VLEKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTN 737

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            +  L+AF+ G D +  T    +      V +                   K   +    
Sbjct: 738 CKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQ 779

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G +      L     A        NF     +     + +            K W +  
Sbjct: 780 PGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDR 839

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             VS    +      +  E                               GRS  + ++ 
Sbjct: 840 KEVSAWQKKQKAFALEKCEVY--------------------------TLLGRSRQFPNMT 873

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
           +             R            VQ  + D+    M+   +       G+ ++L V
Sbjct: 874 HAGPGQKGHV---ERAAINAP------VQGSAADVAMCAMLEIERNARLKELGWRLLLQV 924

Query: 629 HDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEGYESKRY 673
           HDE++ E P      A  +    M+     +    + L  +   +K +
Sbjct: 925 HDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDLAVDAKYAKSW 972


>gi|224050209|ref|XP_002195724.1| PREDICTED: similar to polymerase (DNA directed) nu [Taeniopygia
           guttata]
          Length = 631

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 91/590 (15%), Positives = 166/590 (28%), Gaps = 125/590 (21%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWI-----CTLVLAR 101
            H     QVL + L+   V I+  N+  +    L   +  +I   +          + A 
Sbjct: 118 AHKKFSWQVLFQMLQCK-VPIICFNAK-DFLRTLLQIYGNEISWKQVANSVVLDPRIAAW 175

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD-RNKPNHREAWRLFGEY 160
                           + S +    K     F KG  +      RN         L   Y
Sbjct: 176 LINPSDT---------VPSFECLIQKYFEKPFSKGAENTDTDTLRNISYQNLGVNLEKLY 226

Query: 161 CKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
               + +   +  +         EL    +   +      VD       ++I+ +   +L
Sbjct: 227 NVM-MDLAHGLKAQGLWNLFCTLELPLIKILAVMETHKIYVDKQELKKTSEILGLRLKEL 285

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHL--EDLTE-------TTCQRVLSSNKKL 269
           ++E   +            +L+  LF +  LH   E L         +T + VL+  + L
Sbjct: 286 EREAHEVAG-ERFLLTSSCQLREVLFDKLKLHTLCEKLQRTEIQQLVSTSEVVLNKLQDL 344

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P    +   R    +     ++ L       G +  T    G + TGR S      Q +
Sbjct: 345 HPLPKIILEYRQ-VHKMKSTYVDGL-RTCMKKGFISSTWNQTG-TVTGRLSAKHPNIQGI 401

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
            +   +  +   I       IT  P          R+  ++ +G   + AD + IE R+L
Sbjct: 402 SKHPVTIAKKQYIKGKEEDIITISP----------RTLFVSKKGCTFLAADFSHIELRIL 451

Query: 390 AWMAGEQWKLKAFETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           A ++ E   LK F+  E  D++ T  ++   +   QV    R   K +            
Sbjct: 452 ADLSSEPELLKLFQEPEITDIFATLASQWKGIPSEQVKHADREQAKRIV----------- 500

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                                            +           A           +  
Sbjct: 501 ---------------------------------YSVVYGAGKERLADCLGITPVQASQFI 527

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           +++ QK+ +V E      +  EQ    G  +                          GR 
Sbjct: 528 ESFMQKYKKVHEF---TKKTIEQCRNKGYVVSI-----------------------MGRK 561

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
               ++      L T   Q  R+          +VQ  + D+    M+  
Sbjct: 562 RPLANINAQDYKLRT---QAERQA------VNFVVQGSAADLCKMAMVKI 602


>gi|308522710|ref|NP_001184156.1| polymerase (DNA directed), theta [Xenopus (Silurana) tropicalis]
          Length = 2671

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 93/749 (12%), Positives = 185/749 (24%), Gaps = 162/749 (21%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT------DVTIVAHNSYFERT 78
             +DV ++  A  +                   +  +L          V         +R 
Sbjct: 1979 MDDVLLVGLAVCWGGKDAYYISL-QKEQDQADICPSLAPPPLDQTLSVK--------DRL 2029

Query: 79   VLKACFNLDIPIHRWICTLVL--------ARSNGLPSALKA------VGEALKLSSQKME 124
                     I       T+++        A       +L        V   L     K  
Sbjct: 2030 WHIQSALQQIRPGGSEPTIIMYDCIEQYKALLLACRVSLAGHFQDPKVACWLLDPGSKER 2089

Query: 125  EGKELIARFCKGE------THECLYDRNKPNHREAWRLFGEYCKGDVTVT---------- 168
                ++  F   E             ++      + +        +  V           
Sbjct: 2090 TLHNMVTNFLPYELPLLDGVGPGQGVQSLGLSPSSDQTGRYRAAIEAVVVFSTMNALGAL 2149

Query: 169  REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
             E  K  +     E    Y    +   G         T   I++ +  +++     L   
Sbjct: 2150 LEKEKLQDAFHRVEMPTQYCLALLELNGMGFSTEECETQKHIMEAKLNEIEAVAYQLAG- 2208

Query: 229  LVSSSRCLEKLKTWLFLETGLHL---ED------------------------LTETTCQR 261
               S    + L   LFLE  L                                  +T + 
Sbjct: 2209 RSFSLTSHDDLAQVLFLELKLPPNGDPKAQGNKKTLGYTRRAAASGARVRLGKQFSTAKD 2268

Query: 262  VLSSNKKLTPQAIQVF-NNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRW 319
            VL   K L P    +    R+  + + V+      + +N + G  R        + TGR 
Sbjct: 2269 VLEKLKALHPLPGLILEWKRITNALTKVVFPLQREKLLNPNLGMERIYPISQTHTATGRV 2328

Query: 320  SGCVFPPQNLPRP---------------SRSHEELDQIITHLPTSITSDPDPLQIISD-- 362
            S      QN+P+                                   + P P   +    
Sbjct: 2329 SFTEPNIQNVPKDFEIEMPRLVGESPPSQAPGPSAYPYRNRGKKPQVNTPGPKVPVEQIP 2388

Query: 363  ---------CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                      +R   +   G  ++ A  + +E R+LA ++ ++  ++   +G D++ +  
Sbjct: 2389 AERGVSFFVSMRHAFVPFPGGLILAAAYSQLELRILAHLSRDRRLIQVLNSGSDVFKSIA 2448

Query: 414  ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            A    + P  VT   R   K +   + Y  GAK+  +      + +         ++   
Sbjct: 2449 AEWKMIDPEAVTDTVRQQAKQICYGIIYGMGAKSLGE-----QMGIEESDAACYIDTFKS 2503

Query: 474  EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
             +   + F +    +          +G    R   A +  +           +    T  
Sbjct: 2504 RYTGIQKFLKETVRSCTRDGFVQTILGR--RRYLPAIKDSNPYAKS---HAERQAVNTTV 2558

Query: 534  NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             G A    K                                   +      ++L   +  
Sbjct: 2559 QGSAADIVK-----------------------------------TATVNIQKRLEETFPS 2583

Query: 594  GGKLTENIVQ--AVSRDILAEGMMNATK-----AGYDIVLTVHDEIVCETPDTDEFNASM 646
              K  E+ VQ     R                  G   +L +HDE++ E    D    + 
Sbjct: 2584 VPKSHEHPVQAGGTGR------AERLRHRPPPTRGAFFILQLHDELLYEAAQEDAIQVAQ 2637

Query: 647  -LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             +   M +       + L+ +      + 
Sbjct: 2638 IIKKEMENAMK--LSVKLRVKVKMGPSWG 2664


>gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis]
 gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis]
          Length = 963

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/421 (14%), Positives = 113/421 (26%), Gaps = 89/421 (21%)

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L    +                      +  L  +  S  R R        + TGR S  
Sbjct: 618 LEEGIEACHAIAS-LCEVCSIDSLISNFILPLQGSNVSGKRGRVHCSLNINTETGRLSAR 676

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN P                          L+     +R   IA+ G  L+VAD  
Sbjct: 677 RPNLQNQP-------------------------ALEKDRYKIRQAFIAAPGNSLIVADYG 711

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            +E R+LA +A  +  L+AF+ G D +  T    +      V K +              
Sbjct: 712 QLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIHEAVDKGEV------------- 758

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                  +     G        L     +        NF     +     A +       
Sbjct: 759 -----LLEWDPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLARDWKVSIEE 813

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +     W ++   V +      +   +                          +  +  
Sbjct: 814 AKETVNLWYRERQEVLKWQEARKKEARE--------------------------DGRVHT 847

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619
             GR+ V+  + +     N   R + R            VQ  + D+    M+  ++   
Sbjct: 848 LLGRARVFPSISH---ASNAQKRHIERAAINTP------VQGSAADVAMCAMLQISRNKR 898

Query: 620 ---AGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP---SWAKGLPLKAEGYESKR 672
               G+ ++L +HDE++ E P      A  +    M+           + L  +   ++ 
Sbjct: 899 LKELGWKLLLQIHDEVILEGPTESAVVAKDIVIECMSKPFFNGVNILKVDLSVDAKCAEN 958

Query: 673 Y 673
           +
Sbjct: 959 W 959



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 98/339 (28%), Gaps = 71/339 (20%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DCVHDP--VMPQ 55
             D E  + ID+ +           +I F+        F +    +W D +      +  
Sbjct: 208 ACDTE-VAKIDVKQETP---VGHGEIICFSIYSGPEADFGNGTSCIWVDVLDGGGRDLLV 263

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108
             K   EN ++  V HN  F++ V++     ++P+  +   T+ +AR            +
Sbjct: 264 KFKPFFENPEIKKVWHNYSFDKHVIQNY---EVPVCGFHADTMHMARLWNSSRRTEGGYS 320

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGE-------THECLYDRNKPNHR------EAWR 155
           L+A+    ++ S      + LI +              +    +            E   
Sbjct: 321 LEALTGDKRVMSGAQSCFEGLIGKVSMKTIFGKNKLKKDGSEGKMITVAPVEELQREERE 380

Query: 156 LFGEYCKGDVTVTREIFKRLEPLS---------------------SKEQELWYLDQTIND 194
            +  Y   D   T ++++ L+                           +    L   +  
Sbjct: 381 PWICYSALDAISTWQLYESLKRKLFHMPWNLNGKPVGKSMLDFYKEYWRPFGELLVRMET 440

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLFLETG- 248
            G  VD A    + ++  VE+        +            +     +L+   F     
Sbjct: 441 EGILVDRAYLAEIEKVAKVEQEIAVNRFRNWACKYCPDAKYMNVGSDTQLRQLFFGGIAN 500

Query: 249 -------LHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNN 279
                  L +E   +     +V+   KK   +   +  +
Sbjct: 501 SKDPDSILPVEKKIKVPNVDKVIEEGKKAPTKFCSITLH 539


>gi|229190556|ref|ZP_04317553.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
 gi|228592901|gb|EEK50723.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876]
          Length = 808

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 92/761 (12%), Positives = 189/761 (24%), Gaps = 211/761 (27%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLKEAL-ENTDVTIVAH 71
           +    +   A +  V+  +       V       D     +  +L E L +N  V  +A 
Sbjct: 143 ICTVSLSATAHESRVVPISHKV--GQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 200

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARS----------NGLPSALKAVGEALKLSSQ 121
           N  FE           +   +    L++                P   K       L   
Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNP---KKPTSGWGLKPA 254

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                   +  F        +          +      Y   D     + ++    ++++
Sbjct: 255 TKHIFGVTMNDFSALLKKYKVNF--FDEIDASKGEGLLYSAEDSDYAVQHYEYWSQIAAQ 312

Query: 182 EQELWYLDQTIND-----------RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                     I              G   D  LA    Q  ++ + +  + ++ +     
Sbjct: 313 IPRYEEWLHKIEMSFTRAIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETF 372

Query: 231 S------SSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNK-------------- 267
           +       S    ++K+ +F    + +        +  Q  L                  
Sbjct: 373 NIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEK 432

Query: 268 ----------------------------------KLTPQAIQVFNNRMRASRSAVLKLNT 293
                                             +  P   Q      +  +        
Sbjct: 433 YLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQ-KYTTL 491

Query: 294 LVEAMNSDGRL------RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
           L   +    +       R    +   + TGR +      QN+PRP     +         
Sbjct: 492 LSSHIIGREKYLNFMSGRIHAGYSPFTETGRLNSFNPNGQNVPRPDNDEFK--------- 542

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           +R+  +   GK L   D +G E R++AW +G++  ++ F TG D
Sbjct: 543 ----------------IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGD 586

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           ++  T +     + A++ K +R   K     + Y G   A Q                  
Sbjct: 587 MHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQ------------------ 628

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                  +           C ++  A +  + R+ E   ++   
Sbjct: 629 --------------------FTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLE 668

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +                             +    G   +   + +            
Sbjct: 669 ARE--------------------------QGYVQTIYGYMRLLPGINSAN---RRDRGSA 699

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----------GYDIVLTVHDEIVCET 636
            R+           VQ  + DI+ +      ++             D++  +HDEI+ E 
Sbjct: 700 ERQAANTP------VQGSAADIMKKVQNEIYESIGKQEGVLAHGSADMIAQIHDEIIFEI 753

Query: 637 PDTDEFNA---SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            D  E        +  +M   P     +P++AEG    R+ 
Sbjct: 754 DDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEGSVGYRWG 794


>gi|229127294|ref|ZP_04256290.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
 gi|228656127|gb|EEL11969.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4]
          Length = 808

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 96/759 (12%), Positives = 196/759 (25%), Gaps = 207/759 (27%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLKEAL-ENTDVTIVAH 71
           +    +   A +  V+  +       V       D     +  +L E L +N  V  +A 
Sbjct: 143 ICTVSLSAAAHESRVVPISHKV--GQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 200

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARS----------NGLPS------ALKAVGEA 115
           N  FE           +   +    L++                P        LK   + 
Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATKH 257

Query: 116 L---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           +    ++       K  +  F + +  +           +      EY      +  +I 
Sbjct: 258 IFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQ---IAAQIS 314

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS- 231
           +  E L   E     +   +   G   D  LA    Q  ++ + +  + ++ +     + 
Sbjct: 315 RYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNI 374

Query: 232 -----SSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNK---------------- 267
                 S    ++K+ +F    + +        +  Q  L                    
Sbjct: 375 DINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYL 434

Query: 268 --------------------------------KLTPQAIQVFNNRMRASRSAVLKLNTLV 295
                                           +  P   Q      +  +        L 
Sbjct: 435 GVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQ-KYTTLLS 493

Query: 296 EAMNSDGRL------RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             +    +       R    +   + TGR +      QN+PRP     +           
Sbjct: 494 SHIIGREKYLNFMSGRIHAGYSPFTETGRLNSFNPNGQNVPRPDNDEFK----------- 542

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R+  +   GK L   D +G E R++AW +G++   + F TG D++
Sbjct: 543 --------------IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMH 588

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T +     + A++ K +R   K     + Y G   A Q                    
Sbjct: 589 RRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQ-------------------- 628

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                +           C ++  A +  + R+ E   ++     
Sbjct: 629 ------------------FTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAR 670

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +                             +    G   +   + +             R
Sbjct: 671 E--------------------------QGYVQTIYGYMRLLPGINSAN---RRDRGSAER 701

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA-----------GYDIVLTVHDEIVCETPD 638
           +           VQ  + DI+ +      ++             D++  +HDEI+ E  D
Sbjct: 702 QAANTP------VQGSAADIMKKVQNEIYESIGKQEGVLSHGSADMIAQIHDEIIFEIDD 755

Query: 639 TDEFNA---SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             E        +  +M   P     +P++AEG    R+ 
Sbjct: 756 DPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEGSVGYRWG 794


>gi|156122484|gb|ABU50233.1| DNA polymerase [Cyanophage S-CBP1]
          Length = 586

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 104/723 (14%), Positives = 188/723 (26%), Gaps = 194/723 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-DCVHDPVMPQVLKEAL 61
           TL  D ET         G+   A  +  I      +     ++ D      + + + + L
Sbjct: 2   TLIFDIETD--------GLYNDASCIHCIGI-HDLNAGETYVFNDVGTQQPITKGI-QLL 51

Query: 62  ENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA-LKLS 119
           E+ D  IV HN   ++  V+   F      +  + TLVL+R       L    +   K  
Sbjct: 52  EDAD-LIVGHNIIGYDIPVISKLFPWFSRTNGVLDTLVLSRLYHTDL-LDIDQKRKWKHM 109

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             ++     L A   +   ++  + +      E  +   +Y   DV VTR+++K    + 
Sbjct: 110 PLQLYGRHSLEAYGYRLGEYKGSFGKTADWK-EWSQDMEDYMIQDVNVTRKLWKHFPQIP 168

Query: 180 SK---EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES------------ 224
                E  +  +       G+  D   A  L Q +  E   L   L              
Sbjct: 169 EWVQLEHRVAQILTEQEIYGWYFDENAARELAQTLYTELDDLKGVLRKRYPYVAGREFTP 228

Query: 225 --------------LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TT--CQRVLSSN 266
                          T  +  S    + +   +    G   +  T+   T   + VL   
Sbjct: 229 KRVNRSLGYVEGATCTKLVEFSPTSRDHIAWVMKNLHGWKPDKKTKAGKTAIDEIVLKEI 288

Query: 267 K-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
             +   Q  +      +    +  K N  ++    D R+        A+ T R +     
Sbjct: 289 GTEEALQFFRCLEITKQLGMLSEGK-NAWLKLSRKD-RVHHHCS--VATVTHRCAHRNPN 344

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
              +P                                  R    AS G  +V ADL+GIE
Sbjct: 345 LAQVPSD-----------------------------LNFRRLFCASPGHIMVGADLSGIE 375

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA          A                +   A      R + K +  A  Y  G 
Sbjct: 376 LRMLAHYL-------ARYDDGRYGDILLHGDIHQENADKIGISRRLVKTVTYAFLYGAGD 428

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
           +       +    L+                                           + 
Sbjct: 429 QKI---GLSYDQGLSPDKAKQ-----------------------------------KGKE 450

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           +++A+      + +L     +A ++                             +    G
Sbjct: 451 IRQAYMDAIPGLEKLVEATKKAADR---------------------------GFIRSIDG 483

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI- 624
           R +                           K    ++Q+ +  I    M+ A      I 
Sbjct: 484 RHINVDSSH---------------------KALNMLLQSSAGCIAKRWMVIANDNFPTID 522

Query: 625 ---------VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA-----KGLPLKAEGYES 670
                    +  +HDE+  E        A  L   +      A       +P+ AEG   
Sbjct: 523 NEYLAHTHQLAFIHDELQFECLP---LYAEDLKTHLELCAELAGEYYNLRIPIAAEGKIG 579

Query: 671 KRY 673
             +
Sbjct: 580 STW 582


>gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 1035

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 114/408 (27%), Gaps = 91/408 (22%)

Query: 277  FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                    +     +  L        +GR+  +L     + TGR S      QN P    
Sbjct: 704  LCEVFSIDKLISGFIVPLQGDHISCKEGRIHCSLNIN--TETGRLSARTPSLQNQP---- 757

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   +A+ G  L+VAD   +E R+LA +  
Sbjct: 758  ---------------------ALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTN 796

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +  L+AF+ G D +  T    +      V +                   K   +    
Sbjct: 797  CKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQ 838

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G +      L     A        NF     +     + +            K W +  
Sbjct: 839  PGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWHRDR 898

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              +S    +      +  E                               GRS  + ++ 
Sbjct: 899  KEISAWQKKQKALAFEKCEVY--------------------------TLLGRSRQFPNMT 932

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
            +           + R            VQ  + D+    M+   +       G+ ++L V
Sbjct: 933  H---AGPGQKSHVERAAINAP------VQGSAADVAMCAMLEIERNARLKELGWRLLLQV 983

Query: 629  HDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
            HDE++ E P ++ E   +++   M+     +    + L  +   +K +
Sbjct: 984  HDEVILEGPTESAEEAKAIVVECMSKPFYGTNILKVDLAVDAKYAKSW 1031



 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 79/295 (26%), Gaps = 62/295 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53
             D E  + ID+ +           VI F+           F +    +W         +
Sbjct: 280 ACDTE-VANIDVKEETP---VGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDV 335

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106
                   E+  +  V HN  F+  V++ C    I +  +   T+ LAR           
Sbjct: 336 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 392

Query: 107 SALKAVGEALKLSSQKMEEGKELIA------RFCKGETHECLYDRNKPNHR------EAW 154
            +L+ +    ++ +  +++  +            K         +            E  
Sbjct: 393 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDR 452

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194
            L+  Y   D   T ++++ L+                          +    L   +  
Sbjct: 453 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 512

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF 244
            G  VD A    + +   VER     +               +     +++   F
Sbjct: 513 EGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFF 567


>gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacillus cereus ATCC 14579]
 gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacillus phage phBC6A51]
 gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacillus phage phBC6A51]
          Length = 802

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 96/759 (12%), Positives = 196/759 (25%), Gaps = 207/759 (27%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLKEAL-ENTDVTIVAH 71
           +    +   A +  V+  +       V       D     +  +L E L +N  V  +A 
Sbjct: 137 ICTVSLSAAAHESRVVPISHKV--GQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 194

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARS----------NGLPS------ALKAVGEA 115
           N  FE           +   +    L++                P        LK   + 
Sbjct: 195 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATKH 251

Query: 116 L---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           +    ++       K  +  F + +  +           +      EY      +  +I 
Sbjct: 252 IFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQ---IAAQIS 308

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS- 231
           +  E L   E     +   +   G   D  LA    Q  ++ + +  + ++ +     + 
Sbjct: 309 RYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNI 368

Query: 232 -----SSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNK---------------- 267
                 S    ++K+ +F    + +        +  Q  L                    
Sbjct: 369 DINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYL 428

Query: 268 --------------------------------KLTPQAIQVFNNRMRASRSAVLKLNTLV 295
                                           +  P   Q      +  +        L 
Sbjct: 429 GVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQ-KYTTLLS 487

Query: 296 EAMNSDGRL------RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
             +    +       R    +   + TGR +      QN+PRP     +           
Sbjct: 488 SHIIGREKYLNFMSGRIHAGYSPFTETGRLNSFNPNGQNVPRPDNDEFK----------- 536

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                         +R+  +   GK L   D +G E R++AW +G++   + F TG D++
Sbjct: 537 --------------IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMH 582

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
             T +     + A++ K +R   K     + Y G   A Q                    
Sbjct: 583 RRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQ-------------------- 622

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                +           C ++  A +  + R+ E   ++     
Sbjct: 623 ------------------FTFKTKYMIRKTLDECAQIVNAVKTAYKRIPEYQRKIVLEAR 664

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +                             +    G   +   + +             R
Sbjct: 665 E--------------------------QGYVQTIYGYMRLLPGINSAN---RRDRGSAER 695

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA-----------GYDIVLTVHDEIVCETPD 638
           +           VQ  + DI+ +      ++             D++  +HDEI+ E  D
Sbjct: 696 QAANTP------VQGSAADIMKKVQNEIYESIGKQEGVLSHGSADMIAQIHDEIIFEIDD 749

Query: 639 TDEFNA---SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             E        +  +M   P     +P++AEG    R+ 
Sbjct: 750 DPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEGSVGYRWG 788


>gi|228904297|ref|ZP_04068392.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
 gi|228930754|ref|ZP_04093731.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228828844|gb|EEM74504.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228855382|gb|EEM99946.1| DNA polymerase I [Bacillus thuringiensis IBL 4222]
          Length = 1097

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 95/723 (13%), Positives = 189/723 (26%), Gaps = 197/723 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------- 52
             L +D ET       K       E    +       +     +   H            
Sbjct: 210 KVLAVDTETTGLDITFKSRTG---EHDECVGLIITGKEGESFYFPFKHTQFDNLCGGDDW 266

Query: 53  --MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT-LVLARSNGL---- 105
             M   +K  LE  D+ +  HN+ F+  V+   +   I ++  I T  V + +       
Sbjct: 267 YFMETYMKPLLEKKDIIV--HNASFDWKVI---YIYGIVLNVVIDTFAVFSLTLNAKYQT 321

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
           P  LK +  +L L    +E         CK          ++        L   Y   D 
Sbjct: 322 PVGLKHL-ISLLLKRDSLEL-----DDLCKNGD---FGSIDQNFADLPKELVRLYACADA 372

Query: 166 TVTREIFKRLEPLSS-KEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVE 214
             T  ++  +   +  +      + Q               G  V+V     L Q +D +
Sbjct: 373 DNTLALYHYMLETNMLENWGATKVVQFESIFACAIGYSEFHGQFVNVNETDQLVQDIDRD 432

Query: 215 RTKLDQELESL-----TYGLVSSSRCLEKLKTWLFLETGLHL-----EDLTETTCQRVLS 264
             + ++++ +            + +   +    ++   G          LT    ++ L 
Sbjct: 433 LQEAERKMRNELRKVNYDADNFNPQSNVEKLKIIYEVFGAPEQYKLDGKLTA--DKKALK 490

Query: 265 SNKK--------LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +  K          P     F      +         L E    DG +   ++     +T
Sbjct: 491 NLSKMTNPDDTPKYPFV-NYFQEFNEVNTLRKNFSKNLPEFCTPDGFMFSGVKQFL--KT 547

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      Q                                 +D V+  +    G  +
Sbjct: 548 GRVSISKPNYQ-------------------------------SYNDTVKKYIKPRPGFWM 576

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT-TYARSFNVAPAQVTKDQRAIGKVM 435
              D + IE RV+A M+ +   ++AF+     Y     +  + +    V+K  R   K  
Sbjct: 577 GDMDYSSIEYRVIASMSKQLSLIEAFQDPNTDYHKLQASNMYQIPYELVSKAMRGEAKAF 636

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + +  G +         G+ +                                    
Sbjct: 637 NFGIPFGMGNEKL-------GMTI--------------------------------FGKV 657

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                     +++ + +    V E +    +   +                         
Sbjct: 658 SKENTRKATALRERYFKGQDNVREFFVNAQRDAVK------------------------- 692

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                    GR   Y       + + +  RQ   +           +Q  + DI  + ++
Sbjct: 693 -YGYTETHFGRRRYY---NKETTSVGSIKRQGGNQR----------IQGTAADIYKQAVV 738

Query: 616 ----NATKAGY--DIVL--TVHDEIVCETPDT--DEFNASMLYHLMTSNPSWAKGLPLKA 665
                    G+   ++L   +HDE++ E            +L   M           LK 
Sbjct: 739 RLFLRIINEGWLDKVLLPGFIHDELLMEVSMEIHPLDWMKVLKEEME----------LKV 788

Query: 666 EGY 668
           +G+
Sbjct: 789 DGF 791


>gi|302855051|ref|XP_002959026.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
            nagariensis]
 gi|300255592|gb|EFJ39887.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f.
            nagariensis]
          Length = 2736

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/529 (13%), Positives = 140/529 (26%), Gaps = 133/529 (25%)

Query: 174  RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
             L PL   E  L  +   +   G  +   +       ++    +L  +            
Sbjct: 2266 LLRPLLEVEMPLVRILAAMEATGVALAPRVLRDQRGPLEARLRQLAHKAHVAAGMT-FDL 2324

Query: 234  RCLEKLKTWLFLETGLHLE--------DLTETT--CQRVLSSNKKLTPQAIQVFNNRMRA 283
               + +   LF    L               +T              P    + + R   
Sbjct: 2325 NSPKDVSEVLFQHLNLQPPPCAFTSHHQKHPSTKXEVLEELEESTHHPILRYLLDYR-SL 2383

Query: 284  SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
             +     + TL     + G+L G+     A+ TGR S      Q +PRP     +L Q  
Sbjct: 2384 HKLLTGFVETL--YSTARGQLCGS-WLHTATATGRLSMDEPNLQTIPRPVEYCFQLSQEE 2440

Query: 344  THLPTSITSDPDPLQI----------------------------------ISDCVRSCVI 369
            +   T+  +                                         +   +R+  +
Sbjct: 2441 SPRATTEMAVGVAGAEGQVPPLQPLQPAQGDGGEEAGGGGGGGGCRTVVRMHFNLRNAFV 2500

Query: 370  ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-EDLYVTTYARSFNVAPAQVTKDQ 428
            A  G  ++ AD   IE R++A  +G+           +D +    A    ++  QVT + 
Sbjct: 2501 APPGHVILTADYKQIELRLMAHFSGDSALCDLLRNPAQDPFTLLAAEWKRLSVEQVTPEV 2560

Query: 429  RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
            R   K +   + Y  G            L ++       +++        + + + + E 
Sbjct: 2561 RVQAKRLAYGMLYGMGTSTLAAE-----LGVSVHEAAELSDNFRRAIPGVDRWMKEVVEQ 2615

Query: 489  HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                      +G          R+   R++       ++ ++                  
Sbjct: 2616 CRSCGYIVTLMGR---------RRYFPRIN------ERSCKEARSQR------------- 2647

Query: 549  VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                                      + R  +N+                  + Q  + D
Sbjct: 2648 ------------------------AQSERQAINS------------------VCQGSAAD 2665

Query: 609  ILAEGMM----NATKAGY----DIVLTVHDEIVCETPDTDEFNASMLYH 649
            ++   M+       + G+     +VL VHDE+V E         + L  
Sbjct: 2666 LVKAAMISLTRRIREEGWAGRARLVLMVHDELVLEVETGLLPAMAALTR 2714


>gi|115304357|ref|YP_762649.1| DNA polymerase [Cyanophage Pf-WMP4]
 gi|110559071|gb|ABG75891.1| DNA polymerase [Phormidium phage P4]
 gi|113201851|gb|ABI33163.1| PfWMP4_19 [Phormidium phage Pf-WMP4]
          Length = 630

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 94/692 (13%), Positives = 178/692 (25%), Gaps = 172/692 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D ET     +    I          LF    +      W          VL++ L 
Sbjct: 4   YIALDLETEQVARMPHGKIHA--------LFLASNNGAEFYPWGLAA----AAVLEKLLT 51

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLS 119
           + DV  V  N+ ++  VL     +DIP  R++ T+VLA          +L++ G +  + 
Sbjct: 52  DPDVIFVIQNAAYDVWVL-RHHGVDIPPGRYVDTMVLAHCVNPQQGDYSLESYGRS--VD 108

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +K++   E++         E     + P +         Y   DV +T + +  L P  
Sbjct: 109 DEKVDYRTEMVRAGLWEGGKEDPSVYDVPFNPI----MERYGLQDVRLTLKWWGELLPHL 164

Query: 180 SKEQELWYLDQTINDR------------GYCVDVAL-AHTLNQIVDVERTKLDQELESLT 226
              ++    D   N              G  +D         +++        +      
Sbjct: 165 E--RDARLADSYYNIHLPAVETTISLHGGLYIDRKATLKAATELMGDIEEGYLEFARRYP 222

Query: 227 YGLVSSSR-----------------------CLEKLKTWLFLETGLHLE---DLTET-TC 259
                                              + + L++   +  E      +  T 
Sbjct: 223 KVYKMKWNDKTKEYDIVMKGGKPVMTAPNLQSPNDMASLLYMMGWVPTEFKRSTGKPVTS 282

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVL-KLNT----LVEAMNSDGRLRGTLQFLGAS 314
           Q VL           ++            L  +      L+E ++  G ++G     G +
Sbjct: 283 QDVLKLLIADDETPPKLKECATFVQSLRSLVGIQNQLMQLLELVDDKGFVKGNWYQTG-T 341

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
           +T R+S      QN                                   VR C     G 
Sbjct: 342 QTFRYSSSSPNMQNFSTRHPK------------------------WGKRVRECFTPPPGY 377

Query: 375 KLVVADLAGIEARVLAWMA----GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ-- 428
            + + DL+ IE  ++AW      G+    +    G D +       + V       +   
Sbjct: 378 VMFMGDLSQIELAIVAWYLEILAGDSAMAEGNRQGRDAHDVNTENWYGVTRESNPDEFKQ 437

Query: 429 -RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K    A  Y                                              
Sbjct: 438 CRPRAKNGAFAANYG--------------------------------------------A 453

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHS--RVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +   A          + + +   +      + +L  +  +     +             
Sbjct: 454 KYRRLAFTIGCSFEEAKDILETVERATQITPLKQLVWDTMRQSRDVL----------PVQ 503

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           VP  + K  K  L   L +   L Y  + +   Y   ++ +         K    + Q  
Sbjct: 504 VPYSWRKTTKGFLYDCLNT--RLFYPGIDSKERYERESSER---------KAFNALAQGG 552

Query: 606 SRDILAE----GMMNATKAGYDIVLTVHDEIV 633
              IL +     +             VHDE +
Sbjct: 553 CASILRKLCNQSLPYIQAGEGWFAGLVHDEAI 584


>gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 815

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 147/465 (31%), Gaps = 58/465 (12%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-CFNLDIPI-----HRWICTLVLAR 101
             DP +   ++EAL    +    H+       L A      +             L+ A 
Sbjct: 384 APDPALVAAVREALGEGGLAKAVHDLKRTLKALAAPTEGDGLGPDAALDGVVDDVLLSAY 443

Query: 102 SNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                    +L+A+ EA   +                 +        ++           
Sbjct: 444 LIQPDRRDTSLEALAEAHLHTPLAAPREPAQQRAQGTFDLDGGQAAADRAARAADAVRAA 503

Query: 159 EYCKGDVTV-TREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVER 215
              +   T  T ++  R      +E E+    L   +   G  VDV     L +      
Sbjct: 504 WVVRRLSTQFTPQVLDRGAQRLLQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAA 563

Query: 216 TKLDQELE----SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKK 268
               +         T G+  +    ++L+  LF    +     T+   +T    L    +
Sbjct: 564 DAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLE 623

Query: 269 L--TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
               P    +  +R  A++     +  L+E +  D R+  T     A+ TGR S      
Sbjct: 624 QTRHPFLENLMAHR-DATKLRQT-VEGLLETVAPDDRIHTTYSQ-TAAATGRLSSLHPNL 680

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE--GK--KLVVADLA 382
           QN+P  + +                            +R   +A E  G+   L+ AD +
Sbjct: 681 QNIPVRTEAGRR-------------------------IREVFVADEVAGEQAVLLSADYS 715

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE R++A ++ ++  ++AF  GEDL+    ++ F V P +VT +QRA  K M   L Y 
Sbjct: 716 QIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYG 775

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
                      +  L ++            + +          Q+
Sbjct: 776 -----LSSFGLSKQLKISVDEARGLMKGYFDRFGGVPEELIPYQD 815


>gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group]
          Length = 982

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/408 (14%), Positives = 114/408 (27%), Gaps = 91/408 (22%)

Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                   +     +  L        +GR+  +L     + TGR S      QN P    
Sbjct: 651 LCEVFSIDKLISGFIVPLQGDHISCKEGRIHCSLNIN--TETGRLSARTPSLQNQP---- 704

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                 L+     +R   +A+ G  L+VAD   +E R+LA +  
Sbjct: 705 ---------------------ALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTN 743

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            +  L+AF+ G D +  T    +      V +                   K   +    
Sbjct: 744 CKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQ 785

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G +      L     A        NF     +     + +            K W +  
Sbjct: 786 PGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWHRDR 845

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             +S    +      +  E                               GRS  + ++ 
Sbjct: 846 KEISAWQKKQKALAFEKCEVY--------------------------TLLGRSRQFPNMT 879

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
           +           + R            VQ  + D+    M+   +       G+ ++L V
Sbjct: 880 H---AGPGQKSHVERAAINAP------VQGSAADVAMCAMLEIERNARLKELGWRLLLQV 930

Query: 629 HDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
           HDE++ E P ++ E   +++   M+     +    + L  +   +K +
Sbjct: 931 HDEVILEGPTESAEEAKAIVVECMSKPFYGTNILKVDLAVDAKYAKSW 978



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 79/295 (26%), Gaps = 62/295 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53
             D E  + ID+ +           VI F+           F +    +W         +
Sbjct: 227 ACDTE-VANIDVKEETP---VGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDV 282

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106
                   E+  +  V HN  F+  V++ C    I +  +   T+ LAR           
Sbjct: 283 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 339

Query: 107 SALKAVGEALKLSSQKMEEGKELIA------RFCKGETHECLYDRNKPNHR------EAW 154
            +L+ +    ++ +  +++  +            K         +            E  
Sbjct: 340 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDR 399

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194
            L+  Y   D   T ++++ L+                          +    L   +  
Sbjct: 400 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 459

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF 244
            G  VD A    + +   VER     +               +     +++   F
Sbjct: 460 EGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFF 514


>gi|75759443|ref|ZP_00739536.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74493056|gb|EAO56179.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 1015

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 95/723 (13%), Positives = 189/723 (26%), Gaps = 197/723 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--------- 52
             L +D ET       K       E    +       +     +   H            
Sbjct: 128 KVLAVDTETTGLDITFKSRTG---EHDECVGLIITGKEGESFYFPFKHTQFDNLCGGDDW 184

Query: 53  --MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT-LVLARSNGL---- 105
             M   +K  LE  D+ +  HN+ F+  V+   +   I ++  I T  V + +       
Sbjct: 185 YFMETYMKPLLEKKDIIV--HNASFDWKVI---YIYGIVLNVVIDTFAVFSLTLNAKYQT 239

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
           P  LK +  +L L    +E         CK          ++        L   Y   D 
Sbjct: 240 PVGLKHL-ISLLLKRDSLEL-----DDLCKNGD---FGSIDQNFADLPKELVRLYACADA 290

Query: 166 TVTREIFKRLEPLSS-KEQELWYLDQ----------TINDRGYCVDVALAHTLNQIVDVE 214
             T  ++  +   +  +      + Q               G  V+V     L Q +D +
Sbjct: 291 DNTLALYHYMLETNMLENWGATKVVQFESIFACAIGYSEFHGQFVNVNETDQLVQDIDRD 350

Query: 215 RTKLDQELESL-----TYGLVSSSRCLEKLKTWLFLETGLHL-----EDLTETTCQRVLS 264
             + ++++ +            + +   +    ++   G          LT    ++ L 
Sbjct: 351 LQEAERKMRNELRKVNYDADNFNPQSNVEKLKIIYEVFGAPEQYKLDGKLTA--DKKALK 408

Query: 265 SNKK--------LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +  K          P     F      +         L E    DG +   ++     +T
Sbjct: 409 NLSKMTNPDDTPKYPFV-NYFQEFNEVNTLRKNFSKNLPEFCTPDGFMFSGVKQFL--KT 465

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      Q                                 +D V+  +    G  +
Sbjct: 466 GRVSISKPNYQ-------------------------------SYNDTVKKYIKPRPGFWM 494

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT-TYARSFNVAPAQVTKDQRAIGKVM 435
              D + IE RV+A M+ +   ++AF+     Y     +  + +    V+K  R   K  
Sbjct: 495 GDMDYSSIEYRVIASMSKQLSLIEAFQDPNTDYHKLQASNMYQIPYELVSKAMRGEAKAF 554

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + +  G +         G+ +                                    
Sbjct: 555 NFGIPFGMGNEKL-------GMTI--------------------------------FGKV 575

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                     +++ + +    V E +    +   +                         
Sbjct: 576 SKENTRKATALRERYFKGQDNVREFFVNAQRDAVK------------------------- 610

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                    GR   Y       + + +  RQ   +           +Q  + DI  + ++
Sbjct: 611 -YGYTETHFGRRRYY---NKETTSVGSIKRQGGNQR----------IQGTAADIYKQAVV 656

Query: 616 ----NATKAGY--DIVL--TVHDEIVCETPDT--DEFNASMLYHLMTSNPSWAKGLPLKA 665
                    G+   ++L   +HDE++ E            +L   M           LK 
Sbjct: 657 RLFLRIINEGWLDKVLLPGFIHDELLMEVSMEIHPLDWMKVLKEEME----------LKV 706

Query: 666 EGY 668
           +G+
Sbjct: 707 DGF 709


>gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46]
          Length = 225

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 108/271 (39%), Gaps = 58/271 (21%)

Query: 416 SFNVAPAQVTKDQR--AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
            FNV    +TK       GKV ELALGYQGGA A + M                      
Sbjct: 1   MFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------------------- 39

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                              A+E        + +  +WR  +  +   W    +A   T++
Sbjct: 40  -------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVK 80

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG-NNRSYLNTT--------T 584
           + K       R          K  L++ LPSGR+L Y        S+ +           
Sbjct: 81  SRKTHHTHGLR------FYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLN 134

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
           R+ ++  TYGGKL ENIVQA +RD+LA  +     +G+ IV  VHDE++ E P       
Sbjct: 135 RKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGS-NGL 193

Query: 645 SMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             +  +M     WAKGL L ++G+ S  Y K
Sbjct: 194 KEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 224


>gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa]
 gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 90/779 (11%), Positives = 201/779 (25%), Gaps = 129/779 (16%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DCVHDP--VMPQ 55
             D E    +   +       +   +  F+        F +    +W D +      +  
Sbjct: 71  ACDTE----VAKIEVKEETPIDHGEITCFSIYSGPEADFGNGKSCIWVDVLDGGGRDLLH 126

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------SA 108
                 E+ D+  V HN  F+  V++      I +  +   T+ +AR            +
Sbjct: 127 EFAPFFESPDIKKVWHNYSFDNHVIENY---GISVSGFHADTMHMARLWDSSRRINGGYS 183

Query: 109 LKAVGEALKLSSQKMEEGKELIARFC-------KGETHECLYDRNKPNHREA------WR 155
           L+A+    K+        KELI +         K    +    +                
Sbjct: 184 LEALTGDQKVMRGAEPCYKELIGKVSMKNIFGKKKVKKDGSEGKLTTIAPVEELQREARE 243

Query: 156 LFGEYCKGDVTVTREIFK----------------------RLEPLSSKEQELWYLDQTIN 193
            +  Y   D   T +++K                        +      Q    +   + 
Sbjct: 244 PWICYSALDAISTLQLYKSLESQLSKMPWNMDGKPVLKKSMFDFYLEYWQPFGEILVRME 303

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLFLET- 247
             G  VD A      ++   E+                     +     +L+  LF    
Sbjct: 304 TEGMLVDRAYLAVTEKVAKAEQEVAASRFRKWASRYCPDAKYMNVGSDTQLRQLLFGGIC 363

Query: 248 -------GLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
                   L      +     +V+   KK   +   +    +R          +   +++
Sbjct: 364 NSKDPLVTLPEVKTFKVPNVDKVIEEGKKTPTKFCDIKLCSIRVDLPVETYTASGWPSVS 423

Query: 300 SD------GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
            D       ++        A+ +          + +       +EL  +     +    +
Sbjct: 424 GDALKTLARKISSEYVVNDAAGSQLDDVVFDDSETMTDEDLESKELSVVENEDESGHVGN 483

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK-------AFETGE 406
               Q   + + +C   S   +L   D + I   +L   +                 T  
Sbjct: 484 LRRFQTPEEGIEACHAISSLCELCSID-SLISNFILPLQSSNLSGKSGRVHCSLNINTET 542

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIG-----KVMELALGYQGGAKAFQKMASTTGLNLNT 461
                      N    +  + +             +   Y           +     L+ 
Sbjct: 543 GRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRVLAHLANCKSMLDA 602

Query: 462 FAH------------LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER---- 505
           F                    A E+      +     E+ P   +      +   +    
Sbjct: 603 FKAGGDFHSRTAVNMYPHIREAIEKKRVLLEWYPQPGEDKPPVPLLKDAFASERRKAKML 662

Query: 506 -VKKAWRQKHSRVSELWNELHQAFEQTIE-NGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
               A+ +    +S  W       ++T+    K      +         ++     +   
Sbjct: 663 NFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEAREDG--RVHTL 720

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---- 619
            GR+ V+  + +  S L        R            VQ  + D+    M+  +K    
Sbjct: 721 LGRARVFPSLTDASSSLRGHV---ERAAINTP------VQGSAADVAMCAMLEISKNNRL 771

Query: 620 --AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
              G+ ++L VHDE++ E P ++ E   +++   M+          + L  +   ++ +
Sbjct: 772 KELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFGGKNFLKVDLAVDAKCAQNW 830


>gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 774

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 115/394 (29%), Gaps = 96/394 (24%)

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
             L +L E +++  R+  +L     + TGR S      QN P                  
Sbjct: 457 TFLTSLQERVDNKSRVHCSLNLN--TETGRLSSRGPNLQNQP------------------ 496

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                   L+  +  +R    AS G  L+VAD   +E R+LA M G +  ++AFE G D 
Sbjct: 497 -------ALEKDTYQIRKAFEASPGNNLIVADYGQLELRLLASMTGCKSMIEAFEAGGDF 549

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +  T    F+          +A     E  L +                       +   
Sbjct: 550 HSRTAMDMFD--------YVKAKVDSGEALLEW------------DYAKGDPPKPLVKDL 589

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
            ++        NF     +     + +        E + KAW +    V     ++    
Sbjct: 590 FASERRKAKTLNFSIAYGKTAFGLSDDWGVTLQEAEEMLKAWYKARPEVDVWQTQVKLTA 649

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                                       +       GR     +  + R       +Q  
Sbjct: 650 RN--------------------------HGYTRTLMGRYRDLPEAKSKRQK---FAKQAE 680

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT-DE 641
           R            +Q  + DI    M            G+ ++L VHDE++ E P+   +
Sbjct: 681 RASINTP------IQGGAADIAMMAMNKINANEKLKALGWILLLQVHDEVMLEGPEETAK 734

Query: 642 FNASMLYHLMTSNPSWAKG-----LPLKAEGYES 670
                + + M     W  G     +PL  +G  +
Sbjct: 735 EAFDEVLNNMQEP--WVFGLMKTAVPLLVDGSYT 766


>gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group]
          Length = 1032

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 116/408 (28%), Gaps = 91/408 (22%)

Query: 277  FNNRMRASRSAVLKLNTLV-EAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                          +  L    +   +GR+  +L     + TGR S      QN P    
Sbjct: 701  LCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNIN--TETGRLSARTPNLQNQP---- 754

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   +A+ G  L+VAD   +E R+LA +A 
Sbjct: 755  ---------------------ALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLAS 793

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +  L AF+ G D +  T    +      V +                   K   +    
Sbjct: 794  CKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKVLLEWHPQ 835

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G        L     A        NF     +     A +        +   K W +  
Sbjct: 836  PGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDR 895

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              V     +  +  ++  E                               GRS  + ++ 
Sbjct: 896  KEVLAWQMKQKELAQEKCEVY--------------------------TLLGRSRRFPNMA 929

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
            +  S        + R            VQ  + D+    M+   +       G+ ++L V
Sbjct: 930  HATSGQRGH---IERAAINAP------VQGSAADVAMCAMLEIDRNARLKELGWRLLLQV 980

Query: 629  HDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
            HDE++ E P ++ +   S++   M+     +    + L  +   ++ +
Sbjct: 981  HDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 1028



 Score =  104 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 75/310 (24%), Gaps = 68/310 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53
             D E    +               VI F+           F +    +W         +
Sbjct: 285 ACDTE----VANIDVKQETPVSHGEVICFSIYSGNSDAEADFGNGKTCIWVDVLDGGRDV 340

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106
                   E+  +  V HN  F+  V++      I +  +   T+ LAR           
Sbjct: 341 LMEFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRIDGG 397

Query: 107 SALKAVGEALK----LSSQKMEEGKELIARFC--KGETHECLYDRNKPNHRE------AW 154
            +L+ +    +    +  +  + GK  +      K    +    +               
Sbjct: 398 YSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDR 457

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194
            ++  Y   D   T  +++ L+                          +    L   +  
Sbjct: 458 EMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYEEYWRPFGALLVKMET 517

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244
            G  VD      + ++   +R     +               +     +++   F     
Sbjct: 518 AGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIEN 577

Query: 245 -LETGLHLED 253
             + G  L  
Sbjct: 578 RCKPGETLPK 587


>gi|47215759|emb|CAG05770.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 462

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 53/491 (10%), Positives = 125/491 (25%), Gaps = 111/491 (22%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +  E  +  +   +      VD       + ++  +  +L+QE        +       
Sbjct: 14  YTDMELNMIPVLAVMESHHIHVDKEALKRTSDLLGTKMKQLEQEAHRAAG-EIFLITSNT 72

Query: 238 KLKTWLFLET-------GLHLED---LTETTCQ------RVLSSNKKLTPQAIQVFNNRM 281
           +L+  LF             L       ++T +      + L   + L P    +   R 
Sbjct: 73  QLRAVLFERLRLHQQCENKKLPKTLNKQQSTSEAAVQYLKRLLQLQDLHPLPKIILEYRQ 132

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +     ++ ++  M +        Q L  ++  R  G       +        +   
Sbjct: 133 -VHKIKSTSVDGILSCMRNKNFQALPRQPLQITKQQRVQGKEEVVVKVHPREMFIPQEGW 191

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                  R   I  EG   V AD   +E R+LA  + +   L+ 
Sbjct: 192 TFVAAGKEEVVVKVHP-------REMFIPQEGWTFVAADFCQVELRLLAHFSSDPELLRI 244

Query: 402 FETGEDL-YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
           F   +   +    ++   ++ ++VT + R   K +                         
Sbjct: 245 FNHPQSDVFTMLASQWKGLSQSEVTSEDREHAKRIV------------------------ 280

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                               +           +           + + ++ + +  V   
Sbjct: 281 --------------------YSVVYGAGRERLSGILGVSAKQASQFQDSFLRAYKDVQAF 320

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +  +Q  + G  +                          GR     ++  +   +
Sbjct: 321 ---IQKTIQQCHQQGCVLSL-----------------------MGRRRTLPNIHLSDWAV 354

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVC 634
                Q  R+          +VQ  + D+    M+              ++  +HDE++ 
Sbjct: 355 R---MQAERQA------VNFVVQGSAADLCKMAMIRIFNLVSSSSCSARLLAQLHDELLF 405

Query: 635 ETPDTDEFNAS 645
           E  D      +
Sbjct: 406 EVEDNQVHRFA 416


>gi|225388911|ref|ZP_03758635.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
           DSM 15981]
 gi|225045020|gb|EEG55266.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme
           DSM 15981]
          Length = 711

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 92/325 (28%), Gaps = 52/325 (16%)

Query: 83  CFNLDIPIHRWICTLVLARSNGL---PSALKAVGEA---LKLSSQKMEEGKELIARFCKG 136
             ++           V                +      L + S+    GK         
Sbjct: 423 YLDIPYD-GPVFDAGVAGYLLNPLKDSYGYDDLARDFLGLTVPSRADLLGK--------- 472

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTV--TREIFKRLEPLSSKEQELWYL--DQTI 192
                     K     +   +  Y         T  + +        E E+  +    ++
Sbjct: 473 -QSLGDALWMKDPKAVSCACYMGYVAMKAAAPLTERLKQTGMYQLFIEIEMPLIYSLSSM 531

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              G  V+          + V+   L+QE+   T     +    ++L   LF +  L   
Sbjct: 532 EQAGVKVEREELKEYGSRLKVQIDVLEQEIYRDTG-KEFNINSPKQLGEILFGDMALPGG 590

Query: 253 DLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             T+   +T   VL       P   ++ + R   ++        L   + SDGR+ G   
Sbjct: 591 KKTKTGYSTAADVLEKLAPDYPVVQKILDYRQ-LTKLYSTYAEGLAAFIGSDGRIHGKFN 649

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               + TGR S      QN+P       E                         +R   +
Sbjct: 650 Q-TITATGRISSTEPNLQNIPVRMELGRE-------------------------IRKVFV 683

Query: 370 ASEGKKLVVADLAGIEARVLAWMAG 394
             EG   V AD + IE R+LA M+G
Sbjct: 684 PREGSVFVDADYSQIELRILAHMSG 708


>gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa]
 gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 116/408 (28%), Gaps = 91/408 (22%)

Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                         +  L   +     GR+  +L     + TGR S      QN P    
Sbjct: 503 LCEVCSIDSLISNFILPLQSSDISGKGGRVHCSLNIN--TETGRLSARRPNLQNQP---- 556

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                 L+     +R   IA+ G  L+VAD   +E R+LA +A 
Sbjct: 557 ---------------------ALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLAN 595

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            +  L AF+ G D +  T    +      + K Q                     +    
Sbjct: 596 CKSMLDAFKAGGDFHSRTAMNMYPHIREAIEKKQV------------------LLEWYPQ 637

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G N      L    ++        NF     +     + +        +     W ++ 
Sbjct: 638 PGENKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKER 697

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +      +   +                          N  +    GR+ V+  + 
Sbjct: 698 KEVLKWQQARKKEARE--------------------------NGRVYTLLGRARVFPSLT 731

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTV 628
           +  S L        R            VQ  + D+    M+         + G+ ++L V
Sbjct: 732 DASSSLRGHV---ERAAINTP------VQGSAADVAMCAMLEISKNTRLQELGWKLLLQV 782

Query: 629 HDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
           HDE++ E P ++ E   +++   M+          + L  +   ++ +
Sbjct: 783 HDEVILEGPTESAEVAKAIVVGCMSKPFGGKNFLNVDLAVDSKCAQNW 830


>gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 181

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 5/175 (2%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           LF D ET S I +  CG  +YAE+  ++LFA+ ++  PV++WD   D  MP  LK  L++
Sbjct: 5   LFCDLETYSDIPI-NCGTHRYAENAEILLFAYSYNHGPVKVWDVTQDKTMPTDLKAYLDD 63

Query: 64  TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL--SS 120
            ++  V HN   F+  +L    N+D+P+ R   TLV A ++GLP AL ++ +   +    
Sbjct: 64  PEILTVWHNGGMFDTVILSKVLNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 123

Query: 121 QKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            K +EGK LI  FCK         R     H E W  F  Y   D+   REI++ 
Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQH 178


>gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis]
          Length = 241

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 91/275 (33%), Gaps = 38/275 (13%)

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   +   P    + N R   ++     +  L++ +  +     T      ++TG
Sbjct: 1   TAVDVLEKLQAQAPIVEHILNYRQ-LAKLQSTYVEGLLKFIKPETGKIHTRYQQTLTQTG 59

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKL 376
           R S      QN+P       +                         +R   +   EG KL
Sbjct: 60  RLSSVDPNLQNIPIRMEEGRK-------------------------IRQAFVPQQEGWKL 94

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435
             +D + IE RVLA ++G++   +AF  G+D++ +T    F +  P  VT + R   K +
Sbjct: 95  FASDYSQIELRVLAHISGDEHLREAFLEGQDIHTSTAMHVFGIENPEDVTANLRRQAKAV 154

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y            +  LN+   A     +   +++   + F   + +   E+   
Sbjct: 155 NFGVVYGIS-----DYGLSQNLNITRKAAQEFIDRYFDKYPGVKQFMEDIVKEAKENGYV 209

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
           +        R       ++  +        +    
Sbjct: 210 ETLFHR--RRYLPDIHNRNFNLRSF---AERTAIN 239


>gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 240

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 79/285 (27%), Positives = 116/285 (40%), Gaps = 57/285 (20%)

Query: 402 FETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           F+ GEDLY  T +  F V   +     + R  GK+  LA GY G   A + M        
Sbjct: 1   FKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG------- 53

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                            A++        + +  AWR  +  + +
Sbjct: 54  ---------------------------------ALKMGLSKDELQPIVDAWRAANPNIVQ 80

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNR 577
           LW+++  A  + I  G  +  R       +  +K    L + LPSGR L Y    +G NR
Sbjct: 81  LWHDVDNAATRAISTGSPVTLR------NLGFEKKSGMLFINLPSGRRLAYVKPGIGMNR 134

Query: 578 SYLNTTT-------RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
               + T       R+  +  TYGGKL ENIVQA +RD+L E +     AG  IV+ +HD
Sbjct: 135 FGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITRIENAGNRIVMHIHD 194

Query: 631 EIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E+V + P       + +  L+   P    GLP+ A GYE   Y+K
Sbjct: 195 EVVIDEPINSGITVADICALLNELPERTAGLPIDAAGYECGFYQK 239


>gi|20095249|gb|AAL85287.2|AF465603_1 polymerase [Vibrio phage 1]
          Length = 786

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/600 (14%), Positives = 175/600 (29%), Gaps = 102/600 (17%)

Query: 9   ETRSPI----DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-------L 57
           ET  P+    DL   G    ++D  ++   F   +   +L         P+        +
Sbjct: 147 ETGKPVRVAGDLETVGFDYVSKDRFIVSAQFSHREGYSDLVRFYSTEDQPKEGDLLHDQI 206

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K  L +  V +   N  ++   +K  +N++    +   T ++        +  ++    K
Sbjct: 207 KWLLNSEMVIMCGANFKYDLNWIKYKWNIECTNFKL-DTTLVGSLLNENRS-NSLNTHAK 264

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L +       +L   + KG                       Y  GD   T  +      
Sbjct: 265 LFTDLGGYDDDLNNIYDKGR-----------MDLIPDENLLPYAGGDTDATLRVRNHFAR 313

Query: 178 LSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL- 225
              ++                  + +   G  V+     TL + ++ E+ +  +E+  + 
Sbjct: 314 ELQQDPWLTNFYVNLLHPASRAFEKMEQNGVKVNGEKLKTLGEELEQEKNQYLREMVDMM 373

Query: 226 --TYGLVSSSRCL----EKLKTWLFLETGL-------HLEDLTETTCQRVLS--SNKKLT 270
             T                 K +LF   GL       + ++    T +  L+   + K  
Sbjct: 374 PATACPEVPEAKPVIKAAIGKDYLFGARGLGLKPIMVNEKNKEPLTNKSHLNNFDDPKKY 433

Query: 271 PQAIQVFNN---RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA------------SR 315
           P+A +         +A ++        +     DG    +                  + 
Sbjct: 434 PEAHKFIQLGNKWNQADKAQGTYCTGFLRHQREDGYFHPSYMLFKGAFDNDKGTDDSGTV 493

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR +      Q LP+ +                          ++  +R+C    EG  
Sbjct: 494 TGRLAAKDPAIQTLPKKT-------------------------SLAKRLRACYEPPEGYS 528

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV----------T 425
           +V  D +  E R L  MA E    KA+  G DL+V +   +  ++  Q+           
Sbjct: 529 IVEIDFSQGELRRLCGMANEPAMKKAYREGLDLHVISGGATAGLSYEQMQELEKTDAALY 588

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMAS-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           K  R  GK     L Y      FQ+ A    G+ L+         +  + +    ++   
Sbjct: 589 KKYRNYGKPQNFGLLYGMSWGGFQQYAKDQYGVLLSDKEAQNMRFNFFDTYARLPDWHEE 648

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
            +E    +      +G               +       ++   + T+ +       + R
Sbjct: 649 TKEFARVNGYIRSPLGRVRHLPLINSFDNFYKSQAERQAVNSGVQSTLSDLLIYGMARFR 708


>gi|3510695|gb|AAC33565.1| DNA polymerase theta [Homo sapiens]
          Length = 1762

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D  V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 1067 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1126

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 1127 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1185

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 1186 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1244

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 1245 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 1303

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 1304 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 1363

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325
            P    +   R   + +    +  L      +      R+    Q   A+  GR +     
Sbjct: 1364 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 1420

Query: 326  PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358
             QN+PR                             +  +                 D   
Sbjct: 1421 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 1480

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    
Sbjct: 1481 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 1540

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            + P  V  D R   K +   + Y  GAK+  +      + +         +S    +   
Sbjct: 1541 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 1595

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
              F     +N          +G          R+    + +                   
Sbjct: 1596 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 1627

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                        +  YR     R  +NT                
Sbjct: 1628 ----------------------------NNPYRKAHAERQAINT---------------- 1643

Query: 599  ENIVQAVSRDILAEGMMNATK--------------------------------------- 619
              IVQ  + DI+    +N  K                                       
Sbjct: 1644 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 1701

Query: 620  AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
             G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 1702 RGGFFILQLHDELLYEVVEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 1755


>gi|13892061|gb|AAK39635.1| DNA polymerase theta [Homo sapiens]
          Length = 2724

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 95/776 (12%), Positives = 189/776 (24%), Gaps = 213/776 (27%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D  V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 2029 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 2088

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 2089 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 2147

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 2148 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 2206

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 2207 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 2265

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 2266 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALH 2325

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325
            P    +   R   + +    +  L      +      R+    Q   A+  GR +     
Sbjct: 2326 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 2382

Query: 326  PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358
             QN+PR                             +  +                 D   
Sbjct: 2383 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 2442

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              S  +R   +   G  ++ AD + +E R+LA ++ ++  ++   TG D++ +  A    
Sbjct: 2443 PFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 2502

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            + P  V  D R   K +   + Y  GAK+  +      + +         +S    +   
Sbjct: 2503 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2557

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
              F     +N          +G          R+    + +                   
Sbjct: 2558 NQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKD------------------- 2589

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                                        +  YR     R  +NT                
Sbjct: 2590 ----------------------------NNPYRKAHAERQAINT---------------- 2605

Query: 599  ENIVQAVSRDILAEGMMNATK--------------------------------------- 619
              IVQ  + DI+    +N  K                                       
Sbjct: 2606 --IVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPI 2663

Query: 620  AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
             G   +L +HDE++ E  + D    + +    M S       + LK +      + 
Sbjct: 2664 RGGFFILQLHDELLYEVVEEDVVQVAQIVKNEMESAVK--LSVKLKVKVKIGASWG 2717


>gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
 gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983]
          Length = 643

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/539 (15%), Positives = 151/539 (28%), Gaps = 149/539 (27%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
             +E  +  L   ++  G   D ++       ++V   KL++E ++L    V       +
Sbjct: 201 LFQELPVARLLTLMSVTGAPFDHSIMQRWRSDLEVTVAKLEREAQALVKKEVLM-TSPAQ 259

Query: 239 LKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN---- 292
           +   L+ + GL       + +T   VLS      P    +  +R   ++     ++    
Sbjct: 260 VAALLYDDLGLQPPAGRRSRSTGDEVLSMMVDQHPVVSIIRKHRQ-VAKLITTYVDTIRS 318

Query: 293 --------TLVEAMNSDGRLRGTLQFLG-----------ASRTGRWSGCVFPPQNLPRPS 333
                    L+E       +  +  FLG            + TGR S      QN+PR  
Sbjct: 319 LPESSPKPGLLEYFRPQNGVSESCNFLGKNRLYTVWNQTMTVTGRLSSSNPNLQNIPRSH 378

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAW 391
                                    +    +R   I+   +   LV  D   +E RVLA 
Sbjct: 379 E---------------------FEDLGVISLRKAFISPILDSHCLVSVDYRQVEIRVLAH 417

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSF-NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
             G     ++F        T  A      A   VTK++R   KV  LAL Y  G      
Sbjct: 418 FVGPGALRRSFSVDGADIYTNMAAMILRKAANDVTKEERNKAKVCCLALVYGSGIHLL-- 475

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                                                   +  +         +  K+ +
Sbjct: 476 --------------------------------------ARQMGVTTTV----AQGFKRQF 493

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                 +      +  A +   +     I ++RR + L                      
Sbjct: 494 NYAFPELERWMVRVWHAAK--GKKYVETICKRRRKIELDG-------------------- 531

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYD--- 623
                        T +  R          +I+Q  + DI+   M+       +A +    
Sbjct: 532 ----------GELTSEAKRFCI------NSIIQGSAADIMKSAMVQIAHALDEAQWKRGR 575

Query: 624 --IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--PSWAKG----LPLKAEGYESKRY 673
             ++L++HDE V      D      +L   M +   P   +     +PL+        +
Sbjct: 576 PQLLLSIHDEFVLSCHQEDVERLGRLLLREMRNPALPGHDEDDPFSVPLEVSMKYGHNW 634


>gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group]
          Length = 885

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/766 (10%), Positives = 198/766 (25%), Gaps = 119/766 (15%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53
             D E    +               VI F+           F +    +W         +
Sbjct: 138 ACDTE----VANIDVKQETPVSHGEVICFSIYSGNSDAEADFGNGKTCIWVDVLDGGRDV 193

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106
                   E+  +  V HN  F+  V++      I +  +   T+ LAR           
Sbjct: 194 LMEFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRIDGG 250

Query: 107 SALKAVGEALK----LSSQKMEEGKELIARFC--KGETHECLYDRNKPNHRE------AW 154
            +L+ +    +    +  +  + GK  +      K    +    +               
Sbjct: 251 YSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDR 310

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194
            ++  Y   D   T  +++ L+                          +    L   +  
Sbjct: 311 EMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYEEYWRPFGALLVKMET 370

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF----- 244
            G  VD      + ++   +R     +               +     +++   F     
Sbjct: 371 AGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIEN 430

Query: 245 -LETGLHLED--LTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             + G  L      +      +++  KK          + +   ++ +   +        
Sbjct: 431 RCKPGETLPKSRTIKVPNDGSLIAEGKKTPKYCTIELFSIVEDLKTDLFTASGWPSVSGD 490

Query: 301 -----DGRLRGTLQFLG-ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
                 G+L   L +                  +L   +      +              
Sbjct: 491 ALRSLAGKLPTDLVYTTDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHA 550

Query: 355 DPLQ----IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                    I   + + ++  +G   +  D   I   +       +   +         +
Sbjct: 551 IAALCEICSIDSLISNFILPLQGNH-ISCDEGRIHCSLNINTETGRLSARTPNLQNQPAL 609

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN-----TFAHL 465
                    A      +   +    +L L       + + M        +          
Sbjct: 610 EKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMY 669

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER-----VKKAWRQKHSRVSEL 520
                A EE +    +     +  P   +     G    +        A+ +    ++  
Sbjct: 670 QHIRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARD 729

Query: 521 WNELHQAFEQTIE----NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           W    +  + T++    + K ++A + +   L   K +     +    GRS  + ++ + 
Sbjct: 730 WKVSVKEAKDTLKLWYRDRKEVLAWQMKQKELAQEKCE-----VYTLLGRSRRFPNMAHA 784

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHD 630
            S        + R            VQ  + D+    M+   +       G+ ++L VHD
Sbjct: 785 TSGQRGH---IERAAINAP------VQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHD 835

Query: 631 EIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
           E++ E P ++ +   S++   M+     +    + L  +   ++ +
Sbjct: 836 EVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 881


>gi|321475795|gb|EFX86757.1| hypothetical protein DAPPUDRAFT_312857 [Daphnia pulex]
          Length = 1781

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/677 (10%), Positives = 160/677 (23%), Gaps = 158/677 (23%)

Query: 24   YAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQ-----VLKEALENTDVTIVAHNSYFER 77
            Y E   ++  A  +    V                    LK  LE      V     ++ 
Sbjct: 1213 YKEKNSILGVAVAWSCLCVNYIQLRERFDSNLDLAKVSKLKSWLEALIRLKVEF-IVYDI 1271

Query: 78   TVLKACFNLDIPIHRWICTLVLARSNGLPSALK-AVGEALKLSSQKMEEGKELIARFCKG 136
                     D+         +              + + L   S       +L   + + 
Sbjct: 1272 ----RSTANDLRP-------LFHHLLNEMLFRDVDLCQWLLEPSNSSVSLPKLSKMYSQQ 1320

Query: 137  ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL------EPLSSKEQELWYLDQ 190
             +   +Y                 C   + +  ++ +RL      +P    E  +     
Sbjct: 1321 GSPTKMYR--------GREKILHECCALLDIFHQLKQRLSKEELLQPFVDVEMPMVATML 1372

Query: 191  TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT-----WLFL 245
             +   G   D +    + QI+      L++    L      S    +++        L +
Sbjct: 1373 RMEQIGIAFDRSNCELILQILRNHLKMLEEAAHRLAG-RSFSLTSTKEVSKIVASLNLCI 1431

Query: 246  ETGLH-------LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE- 296
            E            +     +  +  L    ++ P    V   R  ++    +    L   
Sbjct: 1432 EEKNPQSFINPLKKKFQPLSVSKASLIKLGRIHPLPRVVVEFRKVSAIIQTIICPLLQAS 1491

Query: 297  --AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
               ++   R+ G  +F  A+  GR +      Q++PRP                      
Sbjct: 1492 TFHVSGVERIAGECEFRNAT--GRVNIVQPNLQHIPRP---------------------F 1528

Query: 355  DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                     VRS   A+ G  L+ AD + +E R+LA ++ +                   
Sbjct: 1529 SLSDGRMINVRSAFHAATGTTLLSADYSQLELRILAHLSEDTGLCSILSKPNGDVFRGIV 1588

Query: 415  RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
              +                                                        +
Sbjct: 1589 SVWKK-------------------------------------------KKQEDVTDDERQ 1605

Query: 475  WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                  +           A +        +    ++   +  + +               
Sbjct: 1606 QAKQICYGIVYGMGCKSLAEQLEVSEEEAQLFVDSFHSTYPNIQKFITNTINMCRS---- 1661

Query: 535  GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                     ++   GR      + +N +       Q  R+    
Sbjct: 1662 ----------------------KGFVITLLGRRRFLPSINSNNAAQR---AQAERQA--- 1693

Query: 595  GKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY 648
                   +Q  + D++   ++   ++         +V  +HDE++ E P      A+ + 
Sbjct: 1694 ---VNTKIQGSAADLVKTAVILLNRSLKEKLSDVHLVHQIHDELLFEIPTNCVERAARVV 1750

Query: 649  H-LMTSNPSWAKGLPLK 664
               M +       +P+ 
Sbjct: 1751 RHCMETAIPMKIRIPVA 1767


>gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 824

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 90/743 (12%), Positives = 190/743 (25%), Gaps = 137/743 (18%)

Query: 44  LWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
             D       + +V KE  EN +V  V HN  F+R V++    + +       T+ +AR 
Sbjct: 102 WVDTLRGGDGVWEVFKEYFENANVKKVWHNYSFDRHVVENHHGIKLAGFA-ADTMHMARL 160

Query: 103 NGLPSALKA----------------VGEALKLSSQKMEEGKELIARFCKGE-THECLYDR 145
                 L                    E L   ++ M   + +   F K +   +    +
Sbjct: 161 WNSNRKLDGGYSLEALSSSADAMSECAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGK 220

Query: 146 N--------KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------------- 182
                        R++   + EY   D   T  + + LE                     
Sbjct: 221 TMILPPIEEIQEARDSRDRWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYR 280

Query: 183 -----QELW--------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                 + +         L   +   G  VD A      ++   ++   +    +     
Sbjct: 281 KCVTLWDFYTFYLAEFGNLLTQMERNGLLVDKAHLAHAEKMAHEDKRVAEDYFRNWAASK 340

Query: 230 -----VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
                + +     +++  LF   G   +   +   +      ++ +         R   +
Sbjct: 341 CEGARIMNVGSGLQVRQLLFA--GAKNKRRDKPGVELTREFTQESSEWIAWDAAGREGKA 398

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
               +K+  L             +Q    + TG  +          R         + I 
Sbjct: 399 PKKTMKV-ALHGITVK------PIQVQTFTATGLPAVSSVVL----RALAGKPGAARAIM 447

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIA----SEGKKLVVA-----DLAGIEARVLAWMA-- 393
               S+        ++     +   A     EG +   A     D+A I+  +  ++   
Sbjct: 448 DTWDSLADAEKTEDVLKKACGTAFEAFGGGKEGVQACAAIDALNDVAAIDTLLSNFIIPL 507

Query: 394 -GEQWKLKAFETGEDL--------YVTTYARSFNVAPAQVTKDQRAIGKVMELALG---- 440
            G+  +         L                 N    +  +                  
Sbjct: 508 QGDDIRGPEGRVHGALNINTETGRLSARRPSLQNQPALEKDRYGIRKAFTAGPGNILVVA 567

Query: 441 -YQGGAKAFQKMASTTGLNLNTFAH------------LVKTNSAPEEWEDAENF--CRWM 485
            Y           +        F                    A ++ E    +      
Sbjct: 568 DYGQLELRLLAHMADCKSMQEAFEAGGDFHSRTALGMYSNIKEAIDKGEVVLEYGEQEET 627

Query: 486 QENHPEHAIEDLFIGTACER-----VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
            +     A+      +   +        A+ +    +++ W    +    T+E   A   
Sbjct: 628 VDEKDRPALVKDVFASERRKAKVLNFSIAYGKTAHGLAKDWGTSLEEAANTVELWYADRP 687

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
            + R+   V  K      ++    GR     D  +             R           
Sbjct: 688 -EVREWQEVQKKMAVEKNLVRTLLGRVRNLPDASSKNEA---FKSHALRASINTP----- 738

Query: 601 IVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS 653
            +Q  + DI    M+   +       GY +++ +HDE++ E P+  +  A  L    M +
Sbjct: 739 -IQGGAADIAMLAMLQIQRCPRLKELGYKLLMQIHDEVILEGPEEHKDEALALTKYHMEN 797

Query: 654 NPSW---AKGLPLKAEGYESKRY 673
                     + L  +G  +K +
Sbjct: 798 PFPGHVNLLNVALAVDGDYAKTW 820


>gi|281339993|gb|EFB15577.1| hypothetical protein PANDA_004677 [Ailuropoda melanoleuca]
          Length = 769

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/493 (16%), Positives = 149/493 (30%), Gaps = 70/493 (14%)

Query: 67  TIVAHNSY-FERTVLKACFNLDIPIHRWI-----CTLVLARSNGLPS---ALKAVGEALK 117
            ++  N+  F RTVL   F  D      +        + A          + + +     
Sbjct: 308 PVICFNAKDFVRTVL-QFFGHDGSWKHVVHFVGLDPRIAAWLIDPGDAAPSFEDLVAKYL 366

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPN-------HREAWRLFGEYCKGDVTVTRE 170
            SS  ++                   +             +   R    Y    +  T E
Sbjct: 367 ESSISVKVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKARRLTVYGLWQLFCTLE 426

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +             L  +   +      VD       + ++     +L+QE   +     
Sbjct: 427 L------------PLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAHFVAG-EQ 473

Query: 231 SSSRCLEKLKTWLFLETGLHL-------EDLT----ETTCQRVLSSNKKLTPQAIQVFNN 279
                  +L+  LF +  L L                +T + VL + + L P    +   
Sbjct: 474 FLITSNNQLREVLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEY 533

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R    ++    ++ L+ A    G +  T    G + TGR S      Q + +      + 
Sbjct: 534 RR-VHKTKSAFVDGLL-ACMRKGSISSTWNQTG-TVTGRLSARHPNIQGISKHPIQITKP 590

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                     +T  P          RS  +A EG   + AD + IE R+LA ++G+   L
Sbjct: 591 QNFKGVEGAMLTISP----------RSMFVAPEGHTFLAADFSQIELRILAHLSGDPELL 640

Query: 400 KAFE--TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
           K F+    +D++ T  ++   V P  VT   R   K +  +  Y  G +          L
Sbjct: 641 KLFQESERDDVFSTLTSQWKGVPPEHVTHADREQTKKVVYSAVYGAGKERLAAC-----L 695

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +          S  ++++  ++F +       +       +G          R+   RV
Sbjct: 696 GVTVQEAAWFLESFLQKYKKVKDFVQTTIAQCHQTGYVASIMGR---------RRPLPRV 746

Query: 518 SELWNELHQAFEQ 530
                +L    E+
Sbjct: 747 RAQDQQLRAQAER 759


>gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii]
          Length = 241

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 92/275 (33%), Gaps = 38/275 (13%)

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTG 317
           T   VL   +   P    + N R   ++     +  L++ +  +     T      ++TG
Sbjct: 1   TAVDVLEKLQAQAPIVEHILNYRQ-LAKLQSTYVEGLLKFIKPETGKIHTRYQQTLTQTG 59

Query: 318 RWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKL 376
           R S      QN+P       +                         +R   +  + G KL
Sbjct: 60  RLSSVDPNLQNIPIRMEEGRK-------------------------IRQAFVPQQAGWKL 94

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVM 435
             +D + IE RVLA ++G++   +AF  G+D++ +T  R F +  P  VT + R   K +
Sbjct: 95  FASDYSQIELRVLAHISGDEHLQEAFLEGQDIHTSTAMRVFGIEKPEDVTANLRRQAKAV 154

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y            +  LN+   A     +   E++   + F   + +   E+   
Sbjct: 155 NFGVVYGIS-----DYGLSQNLNITRKAAQEFIDRYFEKYPGVKQFMEDIVKEAKENGYV 209

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
           +        R       ++  +        +    
Sbjct: 210 ETLFHR--RRYLPDIHNRNFNLRSF---AERTAIN 239


>gi|213421456|ref|ZP_03354522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 236

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 76/243 (31%), Gaps = 26/243 (10%)

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           T++ +          +V     + S      K    +    E            ++ A  
Sbjct: 1   TMLESYILN------SVAGRHDMDSLSDRWLK---HKTITFEDIAGKGKNQLTFNQIALE 51

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALA 204
             G Y   D  VT ++  ++ P   +              L  +   +   G  +D A+ 
Sbjct: 52  EAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVL 111

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQ 260
           H  ++ + +   +L+++   +      +    ++L+T LF + G+     T     +T +
Sbjct: 112 HKHSEEITLRLAELEKKAHDIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSE 170

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL       P    +   R   ++      + L   +N       T      + TGR S
Sbjct: 171 EVLEELALDYPLPKVILEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLS 229

Query: 321 GCV 323
              
Sbjct: 230 STD 232


>gi|224143022|ref|XP_002324822.1| predicted protein [Populus trichocarpa]
 gi|222866256|gb|EEF03387.1| predicted protein [Populus trichocarpa]
          Length = 646

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/537 (15%), Positives = 158/537 (29%), Gaps = 92/537 (17%)

Query: 161 CKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
           C   V  TR +   L  L           + E  L  +   +   G  VD+        +
Sbjct: 160 CCRRVAQTRALCSGLWKLLTSEGLFEALKNIEIPLVNVLADMELWGIGVDMEGCLNARTV 219

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE------DLTETTCQRVLS 264
           +      L+++   L      S      +   L+    L +           +T +  L 
Sbjct: 220 LGKRLRYLEKKAYKLAGMT-FSLYTAADIANILYRHLKLPIPEGHNKGKKHPSTDKHCLD 278

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFLGASRTGRWS 320
             +   P    +  +R  A        +      +        L G      ++ TGR S
Sbjct: 279 LLRHEHPIVPVIREHRTLAKLLNSTLGSICSLARLSMETQKYTLHGHWLQ-TSTATGRLS 337

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGKKLVVA 379
                 Q +         +D  ++       ++P+  +I +   R   +   +   L+ A
Sbjct: 338 IEEPNLQCVEH------AVDFEMSSDKEGDDAEPEHYKINA---RDFFVPTQDNWLLLTA 388

Query: 380 DLAGIEARVLAWMAGEQWKLK-AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           D + IE R++A  + +   +K   +   D++    AR      A V+  +R   K M   
Sbjct: 389 DYSQIELRLMAHFSKDTALIKLLTKPHGDVFNLIAARWTGKPEASVSSVERDQTKRMVYG 448

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           + Y  GA    +      L+ ++     K  S    +    ++      +  E    +  
Sbjct: 449 ILYGMGANTLAEQ-----LDCSSDEAAEKIKSFKSSFPGVASWLHEAVASCREKGYVETI 503

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
            G   +R     +  +S       +  +    +I  G A    K   + +  +  D    
Sbjct: 504 KGR--KRFLSKIKFGNSEEKS---KAQRQAVNSICQGSAADLIKIAMINIHSLIVDG--- 555

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT 618
            +  P   SL                                             M+   
Sbjct: 556 -VGRPESSSLHANKFH---------------------------------------ML--- 572

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674
           K    I+L VHDE+V E   +    A++L  + M    S    +PL  +    + + 
Sbjct: 573 KGQCRILLQVHDELVLEVDPSLINEAAVLLQMSMEDAASLL--VPLHVKLKVGRTWG 627


>gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group]
 gi|113565595|dbj|BAF15938.1| Os04g0637400 [Oryza sativa Japonica Group]
          Length = 560

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 116/408 (28%), Gaps = 91/408 (22%)

Query: 277 FNNRMRASRSAVLKLNTLV-EAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                         +  L    +   +GR+  +L     + TGR S      QN P    
Sbjct: 229 LCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNIN--TETGRLSARTPNLQNQP---- 282

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                 L+     +R   +A+ G  L+VAD   +E R+LA +A 
Sbjct: 283 ---------------------ALEKDRYKIRQAFVAAPGNSLIVADYGQLELRILAHLAS 321

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            +  L AF+ G D +  T    +      V +                   K   +    
Sbjct: 322 CKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKVLLEWHPQ 363

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G        L     A        NF     +     A +        +   K W +  
Sbjct: 364 PGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDR 423

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V     +  +  ++  E                               GRS  + ++ 
Sbjct: 424 KEVLAWQMKQKELAQEKCEVY--------------------------TLLGRSRRFPNMA 457

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTV 628
           +  S        + R            VQ  + D+    M+   +       G+ ++L V
Sbjct: 458 HATSGQRGH---IERAAINAP------VQGSAADVAMCAMLEIDRNARLKELGWRLLLQV 508

Query: 629 HDEIVCETP-DTDEFNASMLYHLMTSNP--SWAKGLPLKAEGYESKRY 673
           HDE++ E P ++ +   S++   M+     +    + L  +   ++ +
Sbjct: 509 HDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 556


>gi|300781564|ref|ZP_07091418.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
 gi|300533271|gb|EFK54332.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
            33030]
          Length = 1474

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 83/531 (15%), Positives = 149/531 (28%), Gaps = 89/531 (16%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEAL 61
            T+  D ET S  D          +   V L  +      PV   D          L   L
Sbjct: 903  TVVFDLETGSADD-----QHVTDDPGFVRLATYSVGGAEPVATTDIAG------ELIPLL 951

Query: 62   ENTDVTIVAHNS-YFERTVLKACFNLD----IPIHRWICTLVLARSN-----GLPSALKA 111
            E  D TIV HN   ++  VL+  + LD    I   +   TL++ R        L   L A
Sbjct: 952  EQAD-TIVGHNIVQYDLPVLQRLYGLDVGALIKAGKVRDTLIMVRLASGGNRNLEYNLDA 1010

Query: 112  VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            V     +  + +   +  +    K                     + EY   DV     +
Sbjct: 1011 VAHRCGVDGKLLAGSESALKALAKQYGG-------FDKIPVDNPEYVEYALQDVRANGAV 1063

Query: 172  FKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            +++L P            +E E  +    +   G  VD A            + ++   L
Sbjct: 1064 YEKLLPATIEAVGEDYLRREHEKMHSLSVVESHGVRVDTAKVDAFIAEEAQTKAEIRAWL 1123

Query: 223  ESLTYGLVS---SSRCL--EKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274
                               ++         G+      +   +T  + L+   +      
Sbjct: 1124 VDTVGIPDEGKAPWASAAGKQAIAEYLERFGVAAPRTAKGAISTSAKALNDLAEAHADVP 1183

Query: 275  QVFNNRMRASRS--AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
            +V     +      +     T+ + +  +   R       +  TGR S            
Sbjct: 1184 EVVELAAKMETLLQSSTPATTIKKYLRGE---RVYPHITSSQATGRLSTTNPGMTVFGSR 1240

Query: 333  SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAW 391
                                            R  ++A    ++L+  DL+ I+AR +A 
Sbjct: 1241 DERLIRQ-------------------------REMIVADSADEELISVDLSQIDARCMAA 1275

Query: 392  MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
             +G+      F  G D +     R F          +R+  K +  A  Y  G K+F   
Sbjct: 1276 GSGDAAYAALFAPGRDAHTEMAIRVFG------DAARRSDAKALGHAANYGMGPKSFAAH 1329

Query: 452  ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
            A      ++      + +    E+   E F   ++++           G  
Sbjct: 1330 A-----GISEVEAKEQLDRLHFEFPQLEAFKDHLRKHAKALGWIATGFGRR 1375



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 58/253 (22%), Gaps = 47/253 (18%)

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                       E L         + A  ++     +      +A     G  A+  + + 
Sbjct: 1231 NPGMTVFGSRDERLIRQREMIVADSADEELISVDLSQIDARCMAA--GSGDAAYAALFAP 1288

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                    A  V  ++A      A              A          +        + 
Sbjct: 1289 GRDAHTEMAIRVFGDAARRSDAKALGHAANYGMGPKSFAAHAGISEVEAKEQLDRLHFEF 1348

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             ++    + L +  +                              +    GR        
Sbjct: 1349 PQLEAFKDHLRKHAK--------------------------ALGWIATGFGRR------- 1375

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV-LTVHDEIV 633
                 ++           YG        Q  +RD+  EG++N      ++V + VHDEIV
Sbjct: 1376 ---VAVDRAKAYTQAPAAYG--------QGTARDVFLEGVLNLPAEVLEMVRIFVHDEIV 1424

Query: 634  CETPDTDEFNASM 646
               P     +   
Sbjct: 1425 LSVPRERAEDIKQ 1437


>gi|313905679|ref|ZP_07839040.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469503|gb|EFR64844.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 180

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 19/189 (10%)

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                   + +  +WR  +  ++  W ++ +A + TI            +V  +      
Sbjct: 1   MGLSEEELQPLVNSWRNSNPMITAFWWDIDRAVKTTITQRIQT------EVRGICFFYKS 54

Query: 556 NNLILMLPSGRSLVY--RDVGNNR------SYLN-TTTRQLTREYTYGGKLTENIVQAVS 606
             L + LPSGR L Y    +G N+      +Y    +T++  R  +YG K  ENIVQAVS
Sbjct: 55  GMLFIKLPSGRLLSYVKPRIGENQYGGESVTYEGVGSTKKWERIESYGPKFVENIVQAVS 114

Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
           RDIL   M         IV  VHDE++ E     + N   +   M  +P W   + L+A+
Sbjct: 115 RDILCYAMKTLRH--CFIVGHVHDELIIECSPDVDTNV--ICKQMGRSPDWMPDILLRAD 170

Query: 667 GYESKRYRK 675
           GYE+  Y+K
Sbjct: 171 GYETNFYKK 179


>gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana]
          Length = 1067

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 62/426 (14%), Positives = 110/426 (25%), Gaps = 111/426 (26%)

Query: 277  FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                          +  L        DGR+  +L     + TGR S      QN P    
Sbjct: 720  LCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQP---- 773

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                  L+     +R   +AS G  LVVAD   +E R+LA + G
Sbjct: 774  ---------------------ALEKDRYKIRKAFVASPGNTLVVADYGQLELRILAHLTG 812

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
             +  ++AF+ G D +  T    +      V   Q                     +    
Sbjct: 813  CKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQV------------------ILEWHPE 854

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G +      L     +        NF     +     + +        +     W    
Sbjct: 855  PGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDR 914

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              V +         ++ IE+G  +                          GRS  +    
Sbjct: 915  QEVRKWQ---EMRKKEAIEDGYVLTLL-----------------------GRSRRFPASK 948

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVL-- 626
            +           + R            VQ  + D+    M+  +      K G+ ++L  
Sbjct: 949  S-----RAQRNHIQRAAINTP------VQGSAADVAMCAMLEISINQQLKKLGWRLLLQW 997

Query: 627  ----------------TVHDEIVCETPDTDEFNASML-YHLMTSNP--SWAKGLPLKAEG 667
                             +HDE++ E P      A  +    M+          + L  + 
Sbjct: 998  SLLDWKLSNKGNLYWKQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDA 1057

Query: 668  YESKRY 673
              ++ +
Sbjct: 1058 KCAQNW 1063



 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 97/354 (27%), Gaps = 72/354 (20%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELW-DC--VHDPVMPQ 55
             D E    +   +       +   +I F+        F +    +W D    +   +  
Sbjct: 290 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLA 345

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL------PSAL 109
             K   E++ +  V HN  F+  +++    ++I       T+ +AR            +L
Sbjct: 346 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIKGGYSL 403

Query: 110 KAV---------------GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           +A+                E L   S K   GK  + +         +    +    E  
Sbjct: 404 EALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIPPVEELQR-EDR 462

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS----------------------SKEQELWYLDQTI 192
             +  Y   D   T ++++ +                             +    L   +
Sbjct: 463 EAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKM 522

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF--- 244
              G  VD      + ++   E+        +            +     +L+   F   
Sbjct: 523 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFFGGI 582

Query: 245 ----LETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
                +  L +E L +     +V+   KK   +   +  +R+  S  +      
Sbjct: 583 SNSSHDEVLPVEKLFKVPNIDKVIEEGKKTPTKFRNIKLHRISDSPLSTENFTA 636


>gi|322822411|gb|EFZ28469.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 927

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 89/718 (12%), Positives = 185/718 (25%), Gaps = 170/718 (23%)

Query: 9   ETRSPIDLTKCGICKYAE--DVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN- 63
           ET   I     G   +    +  +  +   F       +++  +H       L   LE  
Sbjct: 296 ETNFSISAKTHGKVHFVRKTNPEMSHLSVQFFILRWKDDVF-VLHASTALSFLVRVLEEL 354

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           + V IV  N+     +L +    ++         +++      +   A      +  Q  
Sbjct: 355 SGVEIVTFNAPSLLLLLLSYKQGNLFTLCVSDIRLMSWMLQPSAGADAF-TDYDVLLQSC 413

Query: 124 EEGKELIARFCKGETHECLYD---RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++   L A F   E          R          L+G+               L     
Sbjct: 414 QQQIGLAAGFRNMENCTVKEIVCHRVYYMAPLYRLLYGQ---------LGTQGLLPAFLK 464

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY-GLVSSSRCLEKL 239
           +E+ +  L   +   G+ V+++              +L    + L       + + LE+ 
Sbjct: 465 QEKRISLLCAAMKLNGFPVNLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNMQNLEEC 524

Query: 240 KTWLFLET-----------------GLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRM 281
           +  ++                     L +    + +T +  L            +   R 
Sbjct: 525 RMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLKLLAPHHELPRLLIAYR- 583

Query: 282 RASRSAVLKLNTLVEAMNS---------DGR-----------------LRGTLQFLGASR 315
           + ++        ++E             D R                 L       G + 
Sbjct: 584 KTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGESSDKKDDTPVKWVTLHPNFVQEG-TD 642

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QNLPR                 +   + +P +      R C     G  
Sbjct: 643 TGRLSCVEPNLQNLPR-------------SKAIAENDNSEPYEAEMATFRRCFAVPIGLT 689

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+  D   IE RV+A ++ +   + A     D++       F  +P  V  ++R + K +
Sbjct: 690 LLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSP--VNVEERTLAKRV 747

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y                                                   A +
Sbjct: 748 VFGMLYG--------------------------------------------AGPRTLATQ 763

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                     V   ++  + ++      +                               
Sbjct: 764 MGVPMERALHVMSLFKASYPQIERYQRRVIDQCRT------------------------- 798

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
            +  +   +GR     D+ +             R+         +++Q  + D++  GM+
Sbjct: 799 -DGFVRTMTGRIRSLPDINDRVMAKRMY---AERQA------FNSVIQGSAADVMKLGML 848

Query: 616 NATKA-------GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665
              +           ++  +HDEIV   P         ++   M    S    +PL+ 
Sbjct: 849 AVERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHAVSLL--VPLRV 904


>gi|66817246|ref|XP_642487.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4]
 gi|60470570|gb|EAL68549.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4]
          Length = 516

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/552 (11%), Positives = 150/552 (27%), Gaps = 137/552 (24%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E ++  +   +   G   +  +  +  + V  +   L+ + + L  G V S    E +
Sbjct: 23  EIEMKILPIFAMMEFVGIGFNEKICESGREKVQNKINYLEYKAKVLLPGKVFSLSSTEDI 82

Query: 240 KTWLFLETGLHLEDLTE-----------------------TTCQRVLSSNKKLTPQAIQV 276
              LF +  + + ++ +                       +T   VL       P    +
Sbjct: 83  SQLLFQDLKIPVPEIAKANQQYNGNKGGGGCGGGVRRQNYSTKGAVLEHISHHHPLPGLI 142

Query: 277 FNNRMRASRSAVLKLNTLVEAMNS----DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              R + +      ++ L +        + R   +        TGR S      QN+  P
Sbjct: 143 IEIR-KLTHHITHYVDILGKYEYHSDRFNMRRIYSTIQQTVVPTGRISMAFPNLQNISHP 201

Query: 333 SR---------------------SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
                                       D        ++             +R+    +
Sbjct: 202 IEFRVAPSETDLQSQDSIKSFQDEIHTFDYTNDQNFKNLLEIESRCSFTKVSLRNSFTCA 261

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--TGEDLYVTTYARSFNVAPAQVTKDQR 429
            G  L+ AD + +E R+L   + +   ++ F      D++     +   V   +V+ ++R
Sbjct: 262 NGYVLLSADYSQLELRILTHYSKDPNLIEMFNYSRELDVFKCIAHQLSGVDYEKVSDEER 321

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K +   +                G+ +N+ A  +K +                    
Sbjct: 322 NFAKHLVYGIL--------------YGMGINSIASELKVDK------------------- 348

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                         +   + ++  +  + +    +                         
Sbjct: 349 -----------EKAKVQLERFKNTYRTLIDFLESIEDRV--------------------- 376

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                  +  +    GR   +  + + ++      +              ++ Q  + DI
Sbjct: 377 -----FIDAYIKTLFGRIRNFSAIHDPKTLPKDIGKIKRGAR-------NSVPQGTAADI 424

Query: 610 LAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLP 662
               M+N             +VL +HDE++ E P TD    A ++   M +       LP
Sbjct: 425 TKLAMINIQSQFDQLSINVHMVLQLHDELLFEVPLTDIDQSAKIIKESMENVVKLNVPLP 484

Query: 663 LKAEGYESKRYR 674
           +K        + 
Sbjct: 485 IKM--SIGTNWG 494


>gi|47216119|emb|CAG11187.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2382

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 96/753 (12%), Positives = 188/753 (24%), Gaps = 174/753 (23%)

Query: 30   VILFAFGFDDHPVELWDCVHDPVM---------------------PQVLKEALENTDVTI 68
            +I  A  +            +                           +K  L       
Sbjct: 1689 LIGLAVCWGSRDAYYISLQQEQSAGSFSSSLAPPPLDDDLGLRERLAQVKTCLGQPS--- 1745

Query: 69   VAHN-----SYFER----TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
             AH+       ++      VL     + +         V               E   L 
Sbjct: 1746 -AHHGDRVLIAYDIIRTYKVLVLSCGISLE-GSCEDPKVACWLLDPG------SEERTLP 1797

Query: 120  SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP-- 177
            +       E +               + P  R +      Y      V   +   L    
Sbjct: 1798 NMVTVYCPEELPLLG----GLGSSHTHCPRVRASTASVLTYA-----VMGRLTGLLREDG 1848

Query: 178  ----LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                  S E         +   G     A       ++  +   L+ +   L      S 
Sbjct: 1849 VLDHFRSVEMPSQVCLALLELNGVGFSAAECERQKHVMQAKLAALEGQAYRLAGHS-FSL 1907

Query: 234  RCLEKLKTWLFLETGLHL-----EDLTE--------------------TTCQRVLSSNKK 268
              ++ +   LFLE  L          ++                    +T + VL   + 
Sbjct: 1908 TSVDDVAQVLFLELHLPPNGDVNGSKSKKTLGYGRRGGGGRVRLGKQFSTTKDVLEKLRP 1967

Query: 269  LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRT------- 316
            L P    +   R   +      +  L             R+    Q   A+         
Sbjct: 1968 LHPLPGLILEWRRITNAL-TKVVFPLQREKKHHSALSMDRIYPIAQTHTATGNPQTPEPC 2026

Query: 317  --------------GRWSGCVFPPQNLPR-------------------PSRSHEELDQII 343
                          GR S      QN+P+                      +  +  +  
Sbjct: 2027 ETCNMRWLSLVLLPGRVSFTEPNIQNVPKDFEIQMATVVCESPPSQDGRHLAARKGKKRR 2086

Query: 344  THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
            + +P+   +  +     S  +R   +   G  ++ AD + +E RVLA ++ +Q  L+   
Sbjct: 2087 SAVPSGAAAGSEQGPAFSVSMRHAFVPFSGGMILAADYSQLELRVLAHLSKDQRLLQVLN 2146

Query: 404  TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
             G D++    A   +V P  VT   R   K +   + Y  GAK+  +      + +    
Sbjct: 2147 GGADVFRCIAAEWKSVDPDSVTDGLRQQAKQICYGIIYGMGAKSLGE-----QMGVEEND 2201

Query: 464  HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                  +    +     F +   +N  ++      +G          R+    ++     
Sbjct: 2202 AACYIETFKSRYRGINAFLKETVKNCGKNGYVQTLMGR---------RRYLPGITNTNAH 2252

Query: 524  LHQAF-EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
            +      Q +       A     +  V ++K         P         +G      ++
Sbjct: 2253 VKAHAERQAVNTTVQGSAADIVKLATVNIQKRLRQTYPAAPLSHQHPAPVMGRFCGAGSS 2312

Query: 583  TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEF 642
              R +TR                               G   VL +HDE++ ET D D  
Sbjct: 2313 RRRAVTR----------------------------HPRGGYFVLQLHDELIYETTDEDVI 2344

Query: 643  NASMLY-HLMTSNPSWAKGLPLKAEGYESKRYR 674
              + +    M +       + ++A+      + 
Sbjct: 2345 QVAQIVKREMETAVKLY--VKMRAKVKVGPSWG 2375


>gi|307177771|gb|EFN66768.1| ATP-dependent DNA helicase HEL308 [Camponotus floridanus]
          Length = 1821

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/505 (13%), Positives = 143/505 (28%), Gaps = 148/505 (29%)

Query: 205  HTLNQIVDVERTKLDQELESLTYGLVSS-SRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
            +     +   R    Q+L   T   V++      + ++          +   +   + +L
Sbjct: 1405 NRARIKLKKIRKMRSQKLAEDTLTEVNNRLNSPIRAESSDIARN--KTKQKAKPKLKEIL 1462

Query: 264  SSNKKLTPQAIQVFNNRMR----ASRSAVLKL--------NTLVEAMNSDGRLRGTLQFL 311
              N  L                  S ++  K+          L++   +D R+RG    +
Sbjct: 1463 ERNLLLANCNTDSIIYNSEDETTLSLASKTKIIETQSNLIQPLLKLAQTDSRVRG--NSI 1520

Query: 312  GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
              + TGR S      QN+P+                                VR   + +
Sbjct: 1521 TCTVTGRVSMHEPNLQNVPK--------------------DFSFADNNFVLSVRMAFVPA 1560

Query: 372  EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
             G  ++ AD   +E R+L   + +    +      D++ +  A+  NV+  +VT + R  
Sbjct: 1561 LGNIMLSADYCQLELRLLTHFSQDSILCEIMRQPGDIFKSIAAKWNNVSEEEVTIEMRQR 1620

Query: 432  GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
             K +   + Y  G K+                                            
Sbjct: 1621 TKQLCYGMIYGMGVKSL------------------------------------------- 1637

Query: 492  HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
             A       +  +   +++   +  + +  N + +   +                     
Sbjct: 1638 -AENLCISESEAQEFLESFMSTYPGIYKWLNNVLEEAHR--------------------- 1675

Query: 552  KKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA 611
                 ++ +    GR   + D+ + +S   +T  Q  R+           VQ  + DI+ 
Sbjct: 1676 -----DVYITTLLGRRRQFPDLKSTKS---STRAQAERQA------VNTKVQGSAADIVK 1721

Query: 612  EGMMNATKA-------------------------------GYDIVLTVHDEIVCETPDTD 640
            + M++  +                                G  +VL +HDE++ E    D
Sbjct: 1722 KAMISIEERIRCNFPDSAIIFPEMNNTRKLRSNSRDMQQRGGYLVLQLHDELLYEVNLAD 1781

Query: 641  EFNASMLYHL-MTSNPSWAKGLPLK 664
                + +    M +       LP+K
Sbjct: 1782 LKEVAAIIRESMENVCQLTVPLPVK 1806


>gi|296119307|ref|ZP_06837875.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
            20306]
 gi|295967699|gb|EFG80956.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM
            20306]
          Length = 1388

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 95/702 (13%), Positives = 180/702 (25%), Gaps = 179/702 (25%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEAL 61
            T+  D ET    DL    +  +     V L  +  +   PV   D          L   L
Sbjct: 816  TVVFDLETGDADDLHVTEVPGF-----VRLATYSVNGAEPVPTTDIAG------ELIPLL 864

Query: 62   ENTDVTIVAHN-SYFERTVLKACFNLD----IPIHRWICTLVLARSN-----GLPSALKA 111
            E  D TIV HN   ++   L+  + LD    I   R   TLV+AR        L   L  
Sbjct: 865  EKAD-TIVGHNVLQYDLPALQRLYGLDVKALIKADRVRDTLVMARLRAGGDKNLKYDLDK 923

Query: 112  VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            V     +  + + +G+  +    K                     + EY   DV     +
Sbjct: 924  VASRCGVDGKLLADGETALKALAKQFGG-------FDKIPVDNPNYVEYALQDVRANVAV 976

Query: 172  FKRL---------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            +++L         +     E    +    +  RG  VD +         +  + ++   L
Sbjct: 977  YEKLLTSVGKEINQDYLRLEHAKMHALAVVEARGIRVDTSKVDQFLAEEEQTKGEIRTWL 1036

Query: 223  ESLTYGLVS---SSRCL--EKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAI 274
                               +++      +  +     ++   +T  + L+   +  P   
Sbjct: 1037 IDTVGIPDEGKSPWASAAGKQVIADYLSQFNVAAPRTSKGSISTSTKALNELAEKHPDVP 1096

Query: 275  QVFNNRMRASRSAVLKLNT-LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +V     +             +       R+  +++ + A+  GR S             
Sbjct: 1097 EVVELAAKMETLLHASTPASTINRYLRGDRVYPSIKSIQAT--GRLSTTKPGMTVFGSRG 1154

Query: 334  RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE-GKKLVVADLAGIEARVLAWM 392
                                           R  ++     + LV  DL+ I+AR +A  
Sbjct: 1155 E-------------------------WLIRQREMILPDSTDEALVSVDLSQIDARCMAAG 1189

Query: 393  AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
            +G+                                          A  +  G  A  +MA
Sbjct: 1190 SGD---------------------------------------ANYAQLFTPGRDAHTEMA 1210

Query: 453  STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                         V  +++      A              A           +  +    
Sbjct: 1211 L-----------RVFGDASRRSDAKALAHAANYGMGQKSFAQHAGISEVEATKQLERLHY 1259

Query: 513  KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            +   + +  + L +                              +  +    GR +    
Sbjct: 1260 EFPALEKFKDHLRKHA--------------------------AAHGWIPTGFGRRVTVDR 1293

Query: 573  VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV-LTVHDE 631
                 +Y             YG        Q  +RD+  EG++N      ++V + VHDE
Sbjct: 1294 AK---AYTRGP-------AAYG--------QGTARDVFLEGVLNLPAEVLEMVRIFVHDE 1335

Query: 632  IVCETPDTDEFNASMLYHLMT--SNPSWAK----GLPLKAEG 667
            IV   P            +M               +P+ ++ 
Sbjct: 1336 IVLSVPRDRAEEIKH--TVMGAFQAVELPNTGGVDVPVLSDS 1375


>gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299]
 gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299]
          Length = 972

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 108/400 (27%), Gaps = 91/400 (22%)

Query: 286 SAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                +  L        +GR+   L     + TGR S      QN P             
Sbjct: 648 LLSNFIIPLQSDNLRGFNGRVHAALNIN--TETGRLSARRPSLQNQP------------- 692

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                        L+     +R    A  G  L+VAD   +E R+LA MAG     +AFE
Sbjct: 693 ------------ALEKDRYGIRKAFSAEPGNILIVADYGQLELRLLAHMAGCVSMREAFE 740

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
            G D +  T             K+ R   +  +  L Y                     A
Sbjct: 741 AGGDFHSRTAMGM--------YKEIREAMEQGKCLLEYG---------DIDDDAGGEKPA 783

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
            +    ++        NF     +     A +        E     W      V E    
Sbjct: 784 LVKDMFASERRKAKVLNFSIAYGKTAHGLAKDFGVSTREAEETVDLWYSDRPEVREWQAV 843

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
            H   ++  E GK                            GR     +  ++       
Sbjct: 844 QH---KKAAEKGKVNTLL-----------------------GRHRNLPEASSSDEMRRGH 877

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETP 637
                R            +Q  + DI    M+   +       G+ +++ +HDE++ E P
Sbjct: 878 ---ALRASINTP------IQGGAADIAMLAMIQIHRCPRLRELGFKLLMQIHDEVILEGP 928

Query: 638 DTDEFNASMLYHL-MTSNP---SWAKGLPLKAEGYESKRY 673
           +     A  L  L M            + L  +G  +K +
Sbjct: 929 EEHRDEALALVKLHMEKPFNDHENLCDVELSVDGDYAKTW 968


>gi|309810195|ref|ZP_07704040.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169467|gb|EFO71515.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
          Length = 681

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/386 (13%), Positives = 118/386 (30%), Gaps = 62/386 (16%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
                F+       + + D   D  + Q   LK+ LE+ ++     +       L+    
Sbjct: 337 AQYAGFSVKI-KQKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           + +  +     ++ +      +        L + +   +E           E       +
Sbjct: 392 ITL-FNVTDDIMLASYIADSENN----AGDLGVLANSYQEF-----YVQSDEIIYGKGKK 441

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDR 195
               H         +    V V  ++  ++ P   + +           +  +   +   
Sbjct: 442 Q---HSVDVDTLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIA 498

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  V       +   +DV  T L  ++  L      +    ++L   LF +  L     T
Sbjct: 499 GIKVQATTLVKMKNDLDVRITDLKNKIYQLAG-EKFNINSPKQLGVILFEKLKLTPAKKT 557

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
           +   +T   VL   +  +P    + + R   S+     +N L++ + +DG++        
Sbjct: 558 KTGYSTSVDVLEKLEYQSPIVADILDYRQ-ISKIQSTYINGLLDYIQADGKIHTRFLQ-T 615

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-S 371
            + TGR S      QN+P      +                          +R   +   
Sbjct: 616 LTTTGRLSSVEPNLQNIPVKLEEGK-------------------------QIRKAFVPCK 650

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQW 397
           +   L   D + +E RVLA ++ E+ 
Sbjct: 651 QDSYLFSCDYSQVELRVLAHVSHEKN 676


>gi|195450899|ref|XP_002072681.1| GK13557 [Drosophila willistoni]
 gi|194168766|gb|EDW83667.1| GK13557 [Drosophila willistoni]
          Length = 2080

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/670 (13%), Positives = 201/670 (30%), Gaps = 131/670 (19%)

Query: 30   VILFAFGFDDHPVELWDC---VHDPVM-----PQVLKEALENTDVTIVAHNSYFERTVLK 81
            +   +F   D+     +         +      + L + L   ++T++ H+   +  +L+
Sbjct: 1510 IACLSFCLADNVAYYMNMQQEGKKEAVGTQLKVEELVKLLTRPELTLIMHDGKEQLKILR 1569

Query: 82   ACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                  + I  +     V             V     +  Q   E K L      G  + 
Sbjct: 1570 HAMPQLVRIAIKLEDPKVANWLLQP----DKVLSFHNMCQQFAPECKGLTDLCGSGRGYS 1625

Query: 141  CLYDRNKPNHREAWRLFGEYCKGDVTVTREIF------------KRLEPLSSKEQELWYL 188
                          R   E C         +             + L+     E  +   
Sbjct: 1626 SYGLDASNAILPKIRASVEAC----VSMHILHGQIENLERIGTGQLLKFFRDLEMPIQLS 1681

Query: 189  DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
               +   G+         L+Q +     KL+ ++  L      +    + +   L    G
Sbjct: 1682 LCNMEFTGFPAKQESLQGLSQQMLSTMKKLEAKIYELHGSR-FNLGSSQAVAKVL----G 1736

Query: 249  LHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
            LH +   + +T +++L      +P +  +   R + S      +  L++    D R+ G 
Sbjct: 1737 LHRKASGKVSTSRQILEKL--DSPISQLIVGYR-KLSTVLAKNVQPLLK-CCQDNRVYGQ 1792

Query: 308  LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                 A+  GR S      QN+ +    + + D++                      RS 
Sbjct: 1793 SLSYTAT--GRISMSEPNLQNVAKDFEINLDSDKVNIS------------------CRSA 1832

Query: 368  VIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
             +  + K+ L+ AD   +E R+LA ++ +   L+   +  DL+    AR  ++  ++V++
Sbjct: 1833 FLPMDFKRCLISADFCQLEMRILAHLSQDPALLEVMNSPRDLFTAIAARWNHMNESEVSE 1892

Query: 427  DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
            + R   K +   + Y  G ++  +      L          +    + +     + + + 
Sbjct: 1893 NLRNGTKQICYGIVYGMGMRSLAE-----SLKCTENEAQTVSEQFHQTYAGISAYIQKVV 1947

Query: 487  ENHPEHAIEDLFIGTACERVKKAWRQ-KHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            +    +   +   G       + + +  +S   ++ N+  +    +   G A    K   
Sbjct: 1948 KFARNNGYVETITGR------RRYLEHINSGELQIKNQAERQAINSTIQGSAADIAK--- 1998

Query: 546  VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                        L +     R                      R        TEN V   
Sbjct: 1999 ---------SAILRMEKHLLRYR-------------------ERLGI-----TENSV--- 2022

Query: 606  SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
                             ++VL +HDE++ E P       + +  L M S       +PLK
Sbjct: 2023 -----------------NLVLHLHDELIFEVPIDKAKKIAKVLSLTMESCVK--LSVPLK 2063

Query: 665  AEGYESKRYR 674
             +    + + 
Sbjct: 2064 VKLKIGRSWG 2073


>gi|183231230|ref|XP_653960.2| DNA-directed DNA polymerase [Entamoeba histolytica HM-1:IMSS]
 gi|169802582|gb|EAL48574.2| DNA-directed DNA polymerase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 657

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/639 (14%), Positives = 170/639 (26%), Gaps = 146/639 (22%)

Query: 53  MPQVLKEALENTDVTIVAHNSYFERT-------VLKACFNLDIPIHRWICTLVLARSNGL 105
           + + L   + N+   I+ +N   E          +   FN +   +    T + A +   
Sbjct: 140 LKKELLPEIINSRRLIIVYNLMEEIKNYRNNIKCILENFNTN---NTIFDTYIGASTIDP 196

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
            S                 +GK         E        NK    E  +        +V
Sbjct: 197 GS----------------VDGKTFSQICLVYEVII-----NKSTIEERLKQTRRLAVKEV 235

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            V             +      L +      + +D  L +   + +  E+ K++ E + +
Sbjct: 236 EVMNNDNMIKVFQEQEMIIDGVLIEMNYCNEFKIDNKLLNEQRKKLIEEQHKIEMETKKI 295

Query: 226 TYGLVSSSRCLEKLKTWLFLET-GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
               + +    E++K  L     G+       TT +++LS      P A  V   R + S
Sbjct: 296 IGRTI-NLSSPEQVKKELIRFNIGIDGIKKKATTDKKILSQ--SDHPFAKLVLEYR-KIS 351

Query: 285 RSAVLKLNTLVEAMNS--DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           +     +  + +      D     T     A  TGR        Q +P+ S S  +   I
Sbjct: 352 KLLSGVIEQIRKCCIKSGDEYFIRTTWSQTAIVTGRIQSKSPNLQQIPKQSFSLPQCLII 411

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                 R   I       V  D   IE R+LA    +   ++ F
Sbjct: 412 P---------------------RDLFITHNNNTFVAIDYNQIELRILADFTKDHHLIEFF 450

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
           ++  D++    A         +T D+R   K +                    G+   + 
Sbjct: 451 KSNTDVHRLIAAHWLKKNVNDITDDERRKAKTIVYGCI--------------YGIGPFSL 496

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
           A  +                                     +   +++  +     +   
Sbjct: 497 ADQLH------------------------------VSLDESKAFLESFLDQFPAFKKWK- 525

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
              +        G       RR                           D  + ++   +
Sbjct: 526 --EETITNASTTGFVHTINNRRRRINN--------------------LTDCNDKKTVAES 563

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCET 636
                            + +Q  + DI+   M+   K       G  ++L +HDEIV E 
Sbjct: 564 KR-----------IAVNSPIQGTAADIIKMCMIEIFKKLHSSWVGVQLLLNIHDEIVLEV 612

Query: 637 PDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           PD         L HLM         +PL       K++ 
Sbjct: 613 PDHLLDEVCVTLKHLMEHIVK--LEVPLVVTVETGKKWG 649


>gi|71660963|ref|XP_817509.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain
           CL Brener]
 gi|70882706|gb|EAN95658.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 924

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/718 (12%), Positives = 185/718 (25%), Gaps = 170/718 (23%)

Query: 9   ETRSPIDLTKCGICKYAE--DVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN- 63
           ET   I     G   +    +  +  +   F       +++  +H       L   LE  
Sbjct: 293 ETNFSISAKTHGKVHFVRKTNPEMSHLSVQFFVLRWKDDVF-VLHASTALSFLVRVLEEL 351

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           + V IV  N+     +L +    ++         +++      +   A      +  Q  
Sbjct: 352 SGVEIVTFNAPSLLLLLLSYKQGNLFTLCVSDIRLMSWMLQPSAGADAF-TDYDVLLQSC 410

Query: 124 EEGKELIARFCKGETHECLYD---RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++   L A F   E          R          L+G+               L     
Sbjct: 411 QQQIGLAAGFRNMENCTVKEIVCHRVYYMAPLYRLLYGQ---------LGTQGLLPAFLK 461

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY-GLVSSSRCLEKL 239
           +E+ +  L   +   G+ V+++              +L    + L       + + L++ 
Sbjct: 462 QEKRISLLCAAMKLNGFPVNLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNMQNLDEC 521

Query: 240 KTWLFLET-----------------GLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRM 281
           +  ++                     L +    + +T +  L            +   R 
Sbjct: 522 RMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLRLLAPHHELPRLLIAYR- 580

Query: 282 RASRSAVLKLNTLVEAMNS---------DGR-----------------LRGTLQFLGASR 315
           + ++        ++E             D R                 L       G + 
Sbjct: 581 KTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGESSDKKDDTPVKWVTLHPNFVQEG-TD 639

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QNLPR                 +   + +P +      R C     G  
Sbjct: 640 TGRLSCVEPNLQNLPR-------------SKAIAENDNSEPYEAEMATFRRCFAVPIGLT 686

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+  D   IE RV+A ++ +   + A     D++       F  +P  V  ++R + K +
Sbjct: 687 LLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSP--VNVEERTLAKRV 744

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y                                                   A +
Sbjct: 745 VFGMLYG--------------------------------------------AGPRTLATQ 760

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                     V   ++  + ++      +                               
Sbjct: 761 MGVPMERALHVMSLFKASYPQIERYQRRVIDQCRT------------------------- 795

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
            +  +   +GR     D+ +             R+         +++Q  + D++  GM+
Sbjct: 796 -DGFVRTMTGRIRSLPDINDRVMAKRMY---AERQA------FNSVIQGSAADVMKLGML 845

Query: 616 NATKA-------GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665
              +           ++  +HDEIV   P         ++   M    S    +PL+ 
Sbjct: 846 AVERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHAVSLL--VPLRV 901


>gi|303289002|ref|XP_003063789.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454857|gb|EEH52162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 942

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/528 (13%), Positives = 128/528 (24%), Gaps = 153/528 (28%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQEL-ESLTYG-LVSSSRCLEKLKTWLFLETGLH 250
              G   D ++       +  E + ++ E   SL       +    +++   L+   G  
Sbjct: 491 ESIGLPFDASVVEAAAVGLRRELSSIEAEASRSLPGRGQPLNLSSPQQVADVLYGFLGFP 550

Query: 251 LED-------LTE--TTCQRVLSSNK---KLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
                      T   TT   VL          P    V   R  A   AV   N      
Sbjct: 551 PPSSNAMQGAKTAQLTTKDDVLRDFASRPNAHPLPGMVLRYR--AVTRAVAMCNAYASLT 608

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           ++DGRLR        + TGR S      Q + R                   ++     +
Sbjct: 609 DADGRLRCEWN-NTRTATGRLSSSNPNLQAVGR----------------AEHSAGAGEEE 651

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE---TGEDLYVTTYAR 415
           + +  +R+  +A  GK L+  D + IE R LA +  ++           G D++   +  
Sbjct: 652 LATFNLRAAFVAPPGKVLLAVDYSQIELRTLAHLTRDEKLCGVLRVAGDGGDVFKMIWNL 711

Query: 416 SFNVAPAQVTK-DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           S +         + R   K     + Y                                 
Sbjct: 712 SRDAPRDAPVSAEDRDKAKRTVYGVLY--------------------------------- 738

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                       +     A +      A + +  A  +    +        +    T   
Sbjct: 739 -----------GQGVAGLAEKLACSTDAAKGLIDALFRTFPGLKRFVVATKERARATKS- 786

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                      LPSGR      +    +       +        
Sbjct: 787 -------------------------AELPSGRHRPLPGIDAAAASARAEAER-------- 813

Query: 595 GKLTENIVQAVSRDILAEGMMN----------------------------------ATKA 620
            K    +VQ  + D++   M                                    A   
Sbjct: 814 -KAMNTLVQGTAADMMKTAMARWFAAISPAPAASASASAISPGGAEGDAHADVRGKADPT 872

Query: 621 GYDIVLTVHDEIVCETPD--TDEFNASMLYH-LMTSNPSWAKGLPLKA 665
              ++  +HDE++ E  D        + L    M      +   P+K 
Sbjct: 873 RARLIAQIHDELLFECDDARECVNRVAALAKVCMERAAKVSVPTPVKV 920


>gi|228968815|ref|ZP_04129777.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228790878|gb|EEM38517.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 607

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 74/605 (12%), Positives = 155/605 (25%), Gaps = 187/605 (30%)

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR-----------GYCVDVALAHT 206
             Y   D     + ++    ++++          I              G   D  LA  
Sbjct: 88  LLYSAEDSDYAVQHYEYWSQIAAQIPRYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQ 147

Query: 207 LNQIVDVERTKLDQELESLTYGLVS------SSRCLEKLKTWLFLETGLHL---EDLTET 257
             Q  ++ + +  + ++ +     +       S    ++K+ +F    + +        +
Sbjct: 148 KKQEAEIMQEQAAERIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGAS 207

Query: 258 TCQRVLSSNK------------------------------------------------KL 269
             Q  L                                                    + 
Sbjct: 208 LDQEALIDMAFMLENKLNDIDEEKYLGVSLPENWGNIDPEKDPTLDKLERGAIRIAKREP 267

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL------RGTLQFLGASRTGRWSGCV 323
            P   Q      +  +        L   +    +       R    +   + TGR +   
Sbjct: 268 HPYKEQALEVIDQLKKIQ-KYTTLLSSHIIGREKYLNFMSGRIHAGYSPFTETGRLNSFN 326

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+PRP     +                         +R+  +   GK L   D +G
Sbjct: 327 PNGQNVPRPDNDEFK-------------------------IRNFFVPKPGKILFFIDFSG 361

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            E R++AW +G++  ++ F TG D++  T +     + A++ K +R   K     + Y G
Sbjct: 362 FELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGG 421

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
              A Q                                         +           C
Sbjct: 422 TEHALQ--------------------------------------FTFKTKYMIRKTLDEC 443

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
            ++  A +  + R+ E   ++     +                             +   
Sbjct: 444 AQIVNAVKTAYKRIPEYQRKIVLEARE--------------------------QGYVQTI 477

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
            G   +   + +             R+           VQ  + DI+ +      ++   
Sbjct: 478 YGYMRLLPGINSAN---RRDRGSAERQAANTP------VQGSAADIMKKVQNEIYESIGK 528

Query: 621 --------GYDIVLTVHDEIVCETPDTDEFNA---SMLYHLMTSNPSWAKGLPLKAEGYE 669
                     D++  +HDEI+ E  D  E        +  +M   P     +P++AEG  
Sbjct: 529 QEGVLSHGSADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQVMEQPPVPGFPVPIEAEGSV 588

Query: 670 SKRYR 674
             R+ 
Sbjct: 589 GYRWG 593


>gi|299116518|emb|CBN74706.1| pol1-like DNA polymerase [Ectocarpus siliculosus]
          Length = 1473

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 111/399 (27%), Gaps = 97/399 (24%)

Query: 288  VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
               L  L E ++   R+  +L     + TGR S      QN P                 
Sbjct: 1155 SNFLQPLQELVDEKSRVHCSLNLN--TETGRLSARKPNLQNQP----------------- 1195

Query: 348  TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                     L+     +R+   A EG  LVVAD   +E R+LA +   +  + AF+ G  
Sbjct: 1196 --------ALEKDQYKIRAAFRAEEGNTLVVADYGQLELRLLAHITDCKSMITAFKEGGC 1247

Query: 408  LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
             +  T    F+     V K         E+ L +                       +  
Sbjct: 1248 FHSRTAVGMFDHVKEAVDK--------GEVLLEW------------DYSKGEPPKPLVKD 1287

Query: 468  TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
              ++        NF     +       +        E + KAW      V     ++ Q 
Sbjct: 1288 VFASERRQAKTLNFSIAYGKTGHGLFKDWGVTLKEAEDLVKAWYADRPEVKRWQKQVIQN 1347

Query: 528  FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             + T                                 GR     D+ +N           
Sbjct: 1348 AKDT--------------------------GFSRTLMGRYRKLPDITSND---RGKVGHG 1378

Query: 588  TREYTYGGKLTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDT-D 640
            TR            +Q  + D+    M+   +       G+ ++L VHDE++ E P+   
Sbjct: 1379 TRAAINTP------IQGGAADVAMVAMIGIVRSPLLKKLGWKLLLQVHDEVILEGPEESA 1432

Query: 641  EFNASMLYHLMTSNPSWA------KGLPLKAEGYESKRY 673
            +   +     M     W         + L  +   +K +
Sbjct: 1433 KEALAETVRCMQQP--WDGIGLRELRVDLLVDAKSAKTW 1469



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 73/302 (24%), Gaps = 57/302 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVE--LWD-CVHDPVMPQ 55
             D E  S I+L   G         V   +        F + P +    D         +
Sbjct: 650 ACDTE-VSEINLKDHGP---VGHGRVTCISIYGGPDLDFGEGPGKILWVDNLGAAAGTLE 705

Query: 56  VLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWI-CTLVLARSNGLPS--- 107
                  +     V HN  F+R V+           I    +   T+ +AR         
Sbjct: 706 EFLPFFASEKHKKVWHNYGFDRHVMFNSPDNREEQRIDCVGFAGDTMHMARLWDTSMEKY 765

Query: 108 ------ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP------NHREAWR 155
                 +L+A+   L    Q+    KEL       +          P         E   
Sbjct: 766 AGDTGFSLEALSLKLLGEGQRKTPMKELFGIPKLKKDGTPGNLLVLPPIDEIQTRPEVRP 825

Query: 156 LFGEYCKGDVTVTREIFKRLEPLS----------------SKEQELWYLDQTINDRGYCV 199
            F EY   D   T  + + L                            L   +   G  V
Sbjct: 826 RFIEYSAYDAQATWLVHRELMQKLREMSWKDGMTMLDFYEMYYVPFGELLTDMERTGIYV 885

Query: 200 D-VALAHTLNQIVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
           +       +      ++ K ++       +        +     +++T LF   G     
Sbjct: 886 EAKDYLQDIEVQARNDKKKAEETFLNWVKKIQPGAETLNPSSSTQIQTLLF--GGATNPK 943

Query: 254 LT 255
             
Sbjct: 944 TK 945


>gi|167461235|ref|ZP_02326324.1| Phage-related DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383556|ref|ZP_08057314.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152024|gb|EFX44960.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 222

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 103/266 (38%), Gaps = 59/266 (22%)

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
           V    V    R  GK+ ELALGY G   A + M                           
Sbjct: 6   VEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG-------------------------- 39

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                         A+E        + +  AWRQ +S +++LW ++ +A +  ++     
Sbjct: 40  --------------ALEMGIEEEELQPLVTAWRQSNSNITKLWWDVDRAVKVCVKQKTPT 85

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV--------GNNRSYLN-TTTRQLTR 589
                     +        L ++LPSGR L Y           G + +Y     T++  R
Sbjct: 86  ETHG------IKFIYQSGMLFIVLPSGRRLAYVKPRMGENVFGGESVTYEGVGGTKKWER 139

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
             +YG K  ENIV A+SRDIL   M         IV  VHDEI+ E       + S +  
Sbjct: 140 IESYGPKFVENIVHAISRDILYHAMQTL--KNCSIVAHVHDEIIIEA--DMRMSFSAICE 195

Query: 650 LMTSNPSWAKGLPLKAEGYESKRYRK 675
            M   PSWA GL L A+GYE + Y+K
Sbjct: 196 QMARTPSWANGLLLSADGYECQFYQK 221


>gi|71668117|ref|XP_820999.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain
           CL Brener]
 gi|70886365|gb|EAN99148.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           cruzi]
          Length = 927

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 89/718 (12%), Positives = 185/718 (25%), Gaps = 170/718 (23%)

Query: 9   ETRSPIDLTKCGICKYAE--DVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN- 63
           ET   I     G   +    +  +  +   F       +++  +H       L   LE  
Sbjct: 296 ETNFSISAKTHGKVHFVRKTNPEMSHLSVQFFVLRWKDDVF-VLHASTALSFLVRVLEEL 354

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           + V IV  N+     +L +    ++         +++      +   A      +  Q  
Sbjct: 355 SGVEIVTFNAPSLLLLLLSYKQGNLFTLCVSDIRLMSWMLQPSAGADAF-TDYDVLLQSC 413

Query: 124 EEGKELIARFCKGETHECLYD---RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++   L A F   E          R          L+G+               L     
Sbjct: 414 QQQIGLAAGFRNMENCTVKEIVCHRVYYMAPLYRLLYGQ---------LGTQGLLPAFLK 464

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY-GLVSSSRCLEKL 239
           +E+ +  L   +   G+ V ++              +L    + L       + + LE+ 
Sbjct: 465 QEKRISLLCAAMKLNGFPVKLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNMQNLEEC 524

Query: 240 KTWLFLET-----------------GLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRM 281
           +  ++                     L +    + +T +  L            +   R 
Sbjct: 525 RMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLKLLAPHHELPRLLIAYR- 583

Query: 282 RASRSAVLKLNTLVEAMNS---------DGR-----------------LRGTLQFLGASR 315
           + ++        ++E             D R                 L       G + 
Sbjct: 584 KTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGECSDKKDDTPVKWVTLHPNFVQEG-TD 642

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGR S      QNLPR                 +   + +P +      R C     G  
Sbjct: 643 TGRLSCVEPNLQNLPR-------------SKVIADNDNSEPYEAEMATFRRCFAVPIGLT 689

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+  D   IE RV+A ++ +   + A     D++       F  +P  V+ ++R + K +
Sbjct: 690 LLSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKSP--VSVEERTLAKRV 747

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
              + Y                                                   A +
Sbjct: 748 VFGMLYG--------------------------------------------AGPRTLATQ 763

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                     V   ++  + ++      +                               
Sbjct: 764 MGVPMERALHVMSLFKASYPQIERYQRRVIDQCRT------------------------- 798

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
            +  +   +GR     D+ +             R+         +++Q  + D++  GM+
Sbjct: 799 -DGFVRTMTGRIRSLPDINDRVMAKRMY---AERQA------FNSVIQGSAADVMKLGML 848

Query: 616 NATKA-------GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKA 665
              +           ++  +HDEIV   P         ++   M    S    +PL+ 
Sbjct: 849 AVERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHAVSLL--VPLRV 904


>gi|48696692|ref|YP_024986.1| DNA polymerase I [Vibrio phage VP5]
 gi|40806155|gb|AAR92073.1| DNA polymerase I [Vibrio phage VP5]
          Length = 633

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 104/714 (14%), Positives = 203/714 (28%), Gaps = 149/714 (20%)

Query: 5   FIDFETR--SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           FID         D    G+ KY  D  V  F+    D     +D    P   Q L E  +
Sbjct: 14  FIDLTKYEAWAYDTECTGL-KYKVD-KVFGFSVATPDGQSGYFDIREQPDAVQWLVEQAD 71

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--------------SA 108
           +   TIV HN+ F+   +     + +P+ +   T + A                     +
Sbjct: 72  SYKGTIVCHNASFDYR-MSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYS 130

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L  + +   + +QK  E  + +A    G+        N            +Y   D  +T
Sbjct: 131 LDYLAKKY-VGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSGL--VRKYACPDAELT 187

Query: 169 REIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            E++   + L          + E+++         RG  VD+  A      +D    +  
Sbjct: 188 LELWLEQQELIAKRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQ 247

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS----------NKKL 269
            ++  L      +    ++++     +    +    + T     ++              
Sbjct: 248 AKMFQLAG-REFNPNSPKQVREVFGAKEERGVWTSRDGTVLERTATGNPCLDADALRAMK 306

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL----GASRTGRWSGCVFP 325
            P A  V   R    ++    L   V   +  GR+   +  +    G + TGR S     
Sbjct: 307 DPLAAAVLELRSNI-KTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPA 365

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            Q +P  ++                         I+  ++   +  EG+  + +D+A  E
Sbjct: 366 LQQIPSRNKR------------------------IAAIIKPAFLPEEGQLWLDSDMASFE 401

Query: 386 ARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            R+ A +         +A+    +L +  +       P   +   +A  K M L + +  
Sbjct: 402 VRIFAHLVAAYNPAIARAYAENPELDLHQWVGDLMGIPRNASYSGQANAKQMNLGMIFNR 461

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
           G  A    A + G+    +            ++ A                     G   
Sbjct: 462 GDGAV---ADSLGM-PWEWCEFTDKKGDLIRYKKA---------------------GPEA 496

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + V  A+  +   V  L     +  E+                             +   
Sbjct: 497 KAVIAAYHTQIQGVKTLATRAQKIAEE--------------------------RGWIQTA 530

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
            GR L +          N              K +  ++QA + D   E  +    A   
Sbjct: 531 HGRRLRFP---------NGYKSY---------KASGILIQATAADENKENWLRIEDALGS 572

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GYESKRY 673
              ++L  HD       +  +     +   +         +PL  E     K +
Sbjct: 573 DGSMILNTHDSYSMSVDENWKPIWERVKKAVER---QTLRVPLLLEFDGVGKNW 623


>gi|158425221|ref|YP_001526513.1| DNA polymerase [Azorhizobium caulinodans ORS 571]
 gi|158332110|dbj|BAF89595.1| DNA polymerase [Azorhizobium caulinodans ORS 571]
          Length = 609

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 94/703 (13%), Positives = 178/703 (25%), Gaps = 184/703 (26%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-ELWDCVHDPVMPQVLKE 59
           M+ L  D ET   +D T    C   +D          DD P                  +
Sbjct: 1   MSHLIFDIETNGLLDATNRVHCLCIKDADTGQVWSCTDDGPTGTYIPIERG-------LQ 53

Query: 60  ALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            L + +V  + HN   F+   L+  +    P      T+V +R          + E    
Sbjct: 54  LLADAEVL-IGHNILKFDIPALQKVYPWWKPKGVLRDTIVCSRLIWPK---DDLRERDFR 109

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNH---REAWRLFGEYCKGDVTVTREIFKRL 175
             ++ +    LI R+        L +             +   +YC+ DV VT  +++++
Sbjct: 110 LQKQGKLPGNLIGRYALEAWGYRLGEYKGDYKGPWDVWSQEMQDYCEQDVEVTFRLYQKI 169

Query: 176 EPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +           E  + ++       G+  D A A +L   +   +T+L+ EL+S     
Sbjct: 170 KEKGWKEESIELEHRVQWIIHRQEQYGFLFDQAKAASLYADLVQRKTELEAELQSAFPPW 229

Query: 230 V-----------------------------SSSRCLEKLKTWLFLETGLHL----EDLTE 256
                                               + +   L  + G       ++   
Sbjct: 230 EVESVFVPKVNNRVRGYVKGVPFTKRRTIHFKPSSRDHIAGRLKAKYGWEPSEFTDEGKP 289

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGA 313
              + VLS      P+A ++ +  +   +            ++ + +DGR+ G +   GA
Sbjct: 290 KVDEDVLSHLP--YPEA-KLLSEYLMVEKRLGQIATGKEAWLKHVKADGRIHGDVTTNGA 346

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
             TGR +        +P                                  R   +A++ 
Sbjct: 347 -VTGRMTHSKPNIAQVPGNGSP------------------------YGHRCRELFVAAKR 381

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           K LV  D   +E R LA                                           
Sbjct: 382 KLLVGCDADALELRCLA------------------------------------------- 398

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
                  Y GGA     +     L  +      K      +      +         +  
Sbjct: 399 --GYMARYDGGAYVRTVLEGKKELGTDMHTLNAKALGCSRDVAKVWFYAFIYGAGDFKLG 456

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                     ++  +  R +                                +     +K
Sbjct: 457 TILGAPKGEEQKWGRRSRARF----------------------LKALPALGTIIKKVQEK 494

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
            +    L    GR L  R   +                         ++Q+    ++   
Sbjct: 495 VQKKGFLRGLDGRELRVRSAHS---------------------AFNTLLQSAGAVLMKMA 533

Query: 614 MMNATK----AGYDI------VLTVHDEIVCETPDTDEFNASM 646
           ++   +    AGY        V  VHDE   E  +    +   
Sbjct: 534 LVLLDEDLQAAGYVPGQHYEFVANVHDEWQIEVNEEIAEDVGK 576


>gi|333023285|ref|ZP_08451349.1| putative gp44 [Streptomyces sp. Tu6071]
 gi|332743137|gb|EGJ73578.1| putative gp44 [Streptomyces sp. Tu6071]
          Length = 624

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 96/662 (14%), Positives = 183/662 (27%), Gaps = 151/662 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            D ET             +       L  FG +     +             + AL +++
Sbjct: 42  FDTETTGLDW------WNWGNGFHCRLAQFG-NRSEAYVLPVERGTKFASAARIALRDSE 94

Query: 66  VTIVAHN-SYFERTVLKACFNLDIPI--HRWICTLVLARSNGL--------PSALKAVGE 114
             ++ HN + F+  V +    + +     + I T   +              + L+ + +
Sbjct: 95  R-VITHNGASFDAHVAEVALGIPMEQLSPKIIDTKPTSHLVDPRAVKEGGPGAKLEELIK 153

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + +   EE K  +    K        +          + F  Y   D      +F  
Sbjct: 154 FY-IDAGAAEEVKGSMTALAKKYKV--KKEEIWSLVDLFDKDFLLYAGMDPVWAFRLFDI 210

Query: 175 LEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L                E    Y+   +   GY  D+  A      +  ++ + + + ++
Sbjct: 211 LYHKIPSRSMQKGLFAWEHRTAYVTSLMERTGYAHDLEYAERECVNLTNQQREWESKAQT 270

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTPQAIQVFNNR 280
           L    V +    +++   L +  G  L   T+    +    VL+S     P    + N  
Sbjct: 271 L---GVENVNSNQQIIDRLTV-LGYKLTKKTKKGNISVDDDVLTSIA--HPLTEAIVNA- 323

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +A +       + ++  + +GR+  ++    A           P Q LP          
Sbjct: 324 KKAGKWRKTWFESAIKGRDKNGRVHCSINSCQARTARMTITGAIPAQTLPAGDPYVRHEF 383

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                +                      +  E       D + +E RV+A  +G+   L 
Sbjct: 384 LADAAVLGENGE----------------VLEEEHVSCSIDFSNMELRVMAAASGDPVMLD 427

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV-MELALGYQGGAKAFQKMASTTGLNL 459
           AF  G DL+  T   +F   P  +TK  +         A+G+ GG KA            
Sbjct: 428 AFNRGIDLHNITAIAAFGPMPEGMTKHPKRKAGKGTNFAVGFGGGWKAVTD--------- 478

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                                       ++  +A+   +  V  
Sbjct: 479 -----------------------------------GFGVPEPDAKKAVEAFWGTYKGVKR 503

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
             ++L +   +T     A                           GR +           
Sbjct: 504 FADQLQRQAIRTGHIYTAT--------------------------GRRIPVDK------- 530

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETP 637
                        Y        +Q+ +RDI    ++   KAGY   + L +HDEIV   P
Sbjct: 531 ----------TRPYA--ALNYYIQSSARDITVRALLELHKAGYTPWMRLVIHDEIVFSFP 578

Query: 638 DT 639
            +
Sbjct: 579 KS 580


>gi|149916870|ref|ZP_01905371.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
 gi|149822148|gb|EDM81539.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1]
          Length = 590

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 111/397 (27%), Gaps = 110/397 (27%)

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +          + +++D R+R  L  L A+ +GR+S      Q +P            
Sbjct: 297 LDKLVSTYRWWARDFVDADRRIRCRLHPL-AADSGRFSCTEPNLQQVPS----------- 344

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                          +  +  +R+C + + G +L+VAD A IE RV A +A        F
Sbjct: 345 ---------------EYTAPGLRACFVPAPGHRLIVADYAQIELRVAAHLAPCDALGAVF 389

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             G D +  T A        +V   +R + K +     +  GA+ F+  A++        
Sbjct: 390 RAGRDPHRATAATLTGKPEPEVESHERKLAKAVNFGFLFGMGARRFRSYAAS-------- 441

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                                       ++A+ +    ++    
Sbjct: 442 ------------------------------GYGLDLDERQAAEAREAFFRTFPGIAAWH- 470

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
                                R V  +  + D   + +    GR   +            
Sbjct: 471 ---------------------RRVGALSRRGDHEAITVTTAMGRRKTFP----------- 498

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPD 638
                 R            VQ  + +     M+   +     G   VL VHDE + E P+
Sbjct: 499 ----AGRFSFNA--ALNIPVQGTAAEGFKAAMIRLHRELPSIGGRGVLVVHDEYLAEVPE 552

Query: 639 TDEFNASMLYHL-MTSNP-SWAKGLPLKAEGYESKRY 673
                   +    M +        +P+  E   +  +
Sbjct: 553 ARAEEGKAMVEAHMIAAMGELVHTVPIVVEAEIAAHW 589


>gi|325171249|ref|YP_004251221.1| putative DNA polymerase [Vibrio phage ICP2]
 gi|323512275|gb|ADX87732.1| putative DNA polymerase [Vibrio phage ICP2]
 gi|323512343|gb|ADX87799.1| putative DNA polymerase [Vibrio phage ICP2_2006_A]
          Length = 710

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 85/756 (11%), Positives = 187/756 (24%), Gaps = 161/756 (21%)

Query: 4   LFIDFETRSPI-DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           L  D ET     D+ K     +     ++ F     D    +    H    P +++   E
Sbjct: 17  LSFDCETTIRNHDIGKLQASPFHPANKMVCFGCKTLDAEPVVLRPEHAD-FPTIIR---E 72

Query: 63  NTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKL 118
           N  + +V  N  F+   +      F   +P      T +      G    + ++      
Sbjct: 73  NGVLLLVGQNIKFDLLWMMRTYPDFRDMLPNLCIWDTQLAEYLLTGQDHKMASL------ 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR--EIFKRLE 176
           +   M+ G  L            +   + P        + +Y   +  +    ++ + ++
Sbjct: 127 NELAMKYGGTLKDDRIAEFWKAGVDTSDIPF--PMLEEYQKYDVINTEIVFLEQVDQIIK 184

Query: 177 PLS----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    + +       +   G   D  LA  L + +  E   +   + S+   +   
Sbjct: 185 EGLLNLTMTQMDALMATTEMEWHGMKFDKDLALELAKPLQAEIEDIKGAVSSVMEAVGFP 244

Query: 233 SRC---------------------------------------------------LEKLKT 241
                                                                   K   
Sbjct: 245 KDSINVGSNSQISALIFGGEVKYKEKDYIYNDDGTIATFKGGARAGQPKTKIFERSKRIE 304

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLT-------PQAIQVFNNRMRASRSAVLKLNTL 294
            L        ++ +       LS  K               +   R    +         
Sbjct: 305 GLCKPISPKGKNGSYPVGDDSLSKVKAKYKGDAVVEQLVGDILKFRQ-LEKDVNTYYIGY 363

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
              +  DG L G       + TGR S      QN+   S S ++L +             
Sbjct: 364 ASQVFPDGCLHGNYN-HTKTGTGRLSSSSPNLQNI---SNSGKDLQRKNNKTTQRFHMSD 419

Query: 355 DPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                    ++ C+I+     K++  D + +E    A + G+    K    G D +  + 
Sbjct: 420 ---------IKRCIISRFPNGKIMECDFSQLEVVGGAVLTGDPMMKKDIIEGVDTHCMSA 470

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           + +                   E+  GY                            +   
Sbjct: 471 SWAN------------PKYSYEEILAGY---------------------KAEDPFFTKLR 497

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
           +     NF           A          + +   + +++  + +  +++ +   ++ +
Sbjct: 498 KNAKPVNFALQYGAGAETAAENAGIEVEQAQAIIDNYYKRYCVLKQFQDDVIEQVNKSRQ 557

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                                        P+GR   + +            R+       
Sbjct: 558 PSSRRTEMGM----------PAGRGEYRNPTGRIFTFYEYDAPEF----LRRRGQMTSFS 603

Query: 594 GGKLTENIVQAVS-RDILAEGMMNATKA---------GYDIVLTVHDEIVCETPDTDEFN 643
             +      Q+ +  DI+   + +  K             ++ TVHD +V +        
Sbjct: 604 PTQCKNYPTQSFATGDIVPMMLGHIYKLLMTDKTLRDKCLLIGTVHDSVVFDVHPDILDY 663

Query: 644 ASMLYH-LMTSNPSWAK-------GLPLKAEGYESK 671
           A+     LM   P + +        +PL  +    +
Sbjct: 664 AAKAVRGLMLRTPEYVERYLKVPFDMPLACDVDIGE 699


>gi|48696650|ref|YP_024429.1| DNA polymerase I [Vibrio phage VP2]
 gi|40950048|gb|AAR97639.1| DNA polymerase I [Vibrio phage VP2]
          Length = 633

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 106/716 (14%), Positives = 204/716 (28%), Gaps = 153/716 (21%)

Query: 5   FIDFETR--SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           FID         D    G+ KY  D  V  F+    D     +D    P   Q L E  +
Sbjct: 14  FIDLTKYEAWAYDTECTGL-KYKVD-KVFGFSVATPDGQSGYFDIREQPDAVQWLVEQAD 71

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--------------SA 108
           +   TIV HN+ F+   +     + +P+ +   T + A                     +
Sbjct: 72  SYKGTIVCHNASFDYR-MSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYS 130

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L  + +   + +QK  E  + +A    G+        N            +Y   D  +T
Sbjct: 131 LDYLAKKY-VGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSGL--VRKYACPDAELT 187

Query: 169 REIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
            E++   + L          + E+++         RG  VD+  A      +D    +  
Sbjct: 188 LELWLEQQELIAKRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQ 247

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT------------CQRVLSSNK 267
            ++  L      +    ++++     +    +    + T                L + K
Sbjct: 248 AKMFQLAG-REFNPNSPKQVREVFGAKEERGVWTSRDGTILERTATGNPCLDADALRAMK 306

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL----GASRTGRWSGCV 323
              P A  V   R    ++    L   V   +  GR+   +  +    G + TGR S   
Sbjct: 307 D--PLAAAVLELRSNI-KTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTG 363

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              Q +P  ++                         I+  ++   +  EG+  + +D+A 
Sbjct: 364 PALQQIPSRNKR------------------------IAAIIKPAFLPEEGQLWLDSDMAS 399

Query: 384 IEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
            E R+ A +         +A+    +L +  +       P   +   +A  K M L + +
Sbjct: 400 FEVRIFAHLVAAYNPAIARAYAENPELDLHQWVGDLMGIPRNASYSGQANAKQMNLGMIF 459

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G  A    A + G+    +            ++ A                     G 
Sbjct: 460 NRGDGAV---ADSLGM-PWEWCEFTDKKGDLIRYKKA---------------------GP 494

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             + V  A+  +   V  L     +  E+                             + 
Sbjct: 495 EAKAVIAAYHTQIQGVKTLATRAQKIAEE--------------------------RGWIQ 528

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA- 620
              GR L +          N              K +  ++QA + D   E  +    A 
Sbjct: 529 TAHGRRLRFP---------NGYKSY---------KASGILIQATAADENKENWLRIEDAL 570

Query: 621 --GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE-GYESKRY 673
                ++L  HD       +  +     +   +         +PL  E     K +
Sbjct: 571 GSDGSMILNTHDSYSMSVDENWKPIWERVKKAVER---QTLRVPLLLEFDGVGKNW 623


>gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155]
          Length = 242

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 99/318 (31%), Gaps = 89/318 (27%)

Query: 364 VRSCVIASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
           +R   +  EG  +L+ AD + IE R++A ++ +   ++AF TGEDL+    +R+F+V   
Sbjct: 1   IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
           +VT + R   K M   L                GL+                        
Sbjct: 61  EVTPELRRRVKAMSYGL--------------AYGLS------------------------ 82

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                     A +        +   + +  +   V +   ++     +            
Sbjct: 83  ------AYGVAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVDQARK------------ 124

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                         +       GR     ++ ++            R            +
Sbjct: 125 --------------DGYTSTVLGRRRYLPELDSSN---RQVREAAERAALNAP------I 161

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNP 655
           Q  + DI+   M+N  +A         I+L VHDE++ E  + +      L    M +  
Sbjct: 162 QGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGERGELEQLVREHMGNA- 220

Query: 656 SWAKGLPLKAEGYESKRY 673
            +   +PL+      + +
Sbjct: 221 -YPLDVPLEVSVGYGRSW 237


>gi|195145962|ref|XP_002013959.1| GL23113 [Drosophila persimilis]
 gi|194102902|gb|EDW24945.1| GL23113 [Drosophila persimilis]
          Length = 2193

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 97/667 (14%), Positives = 195/667 (29%), Gaps = 134/667 (20%)

Query: 30   VILFAFGFDDHPVELWDC--VHDPVMPQVLK-----EALENTDVTIVAHNSYFERTVLKA 82
            +   +F   D+ V            +P  LK     + ++  ++T++ H++  +   L  
Sbjct: 1632 IAGLSFCLADNVVYYMCMQEEEGQQVPTRLKVQELCKLMDRPELTLLVHDAKEQVKALLH 1691

Query: 83   ----CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF---CK 135
                  N+ I         V                       K    K +  +F   C 
Sbjct: 1692 GVPQLQNIGIK---VEDPKVGHWLLEP---------------DKTVSFKNMCQQFAPECT 1733

Query: 136  GETHECLYDRNKPNHREAWRLF---GEYCKGDVTVTREIFKRLEPLSSK---EQELWYLD 189
               + C   R   +H                +  VT  I K       +   E  +  + 
Sbjct: 1734 ALANLCGSGRGYSSHGLDSSSAILPKLRASIEACVTVHILKGQIENLERIEVEMPIQIVL 1793

Query: 190  QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
              +   G+         L + +     K++ ++  +      +    + +   L L    
Sbjct: 1794 CRMECVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKMHGSK-FNLGSTQAVANVLGLHRK- 1851

Query: 250  HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
                   +T ++VL       P +  + N+R + +   V  +  L+       R+ G   
Sbjct: 1852 --PHGRVSTSRQVLEKLGS--PISELILNHR-KLNMQIVKGMQPLIR-CCKANRIHGHSI 1905

Query: 310  FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               A+  GR S      QN+        ++      +  S               RS   
Sbjct: 1906 THTAT--GRISMSEPNLQNV----AKDFDIRMGPDSVRISC--------------RSVFK 1945

Query: 370  A-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
            +  E + L+ AD   +E R+LA ++ ++  +    + +DL+    A   ++  A+VT+  
Sbjct: 1946 SMDEKRCLLSADFCQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNHIPEAEVTEQM 2005

Query: 429  RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
            R+  K +   + Y  G ++         L        +      + +     +   + + 
Sbjct: 2006 RSGTKQICYGIVYGMGMRSLGD-----ALQCTESEAQLICEQFHQSYPGIRAYTEKVLKF 2060

Query: 489  HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
              +    +   G    R        +S    L  +  +    T   G A    KR     
Sbjct: 2061 ARKLGYVETITGR--RRYLD---HINSGEQNLIKQAERQAVNTTIQGSAADIAKR----- 2110

Query: 549  VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                     L +    GR   ++ +G                        EN +Q     
Sbjct: 2111 -------AILDMDKNIGR--YWKKLGVE----------------------ENSIQ----- 2134

Query: 609  ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEG 667
                           +VL +HDE+V E P+      +    L M S       +PLK + 
Sbjct: 2135 ---------------LVLHIHDELVYEVPEAKAKRIAKFLGLTMESIGKGKLTVPLKVKI 2179

Query: 668  YESKRYR 674
               + + 
Sbjct: 2180 KMGESWG 2186


>gi|294887455|ref|XP_002772118.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239876056|gb|EER03934.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 940

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/418 (14%), Positives = 112/418 (26%), Gaps = 99/418 (23%)

Query: 273 AIQVFNNRMRASRSA---VLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
             ++  +  R+ R +      L+ L+E +  + DG  R        + TGR        Q
Sbjct: 600 VCRLLWHLQRSIRISAAITSVLSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQ 659

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N P                                 +R    A  G  L+V D + +E R
Sbjct: 660 NPPSAHNDL-------------------------YSIRKAFSARPGNTLIVGDYSQLELR 694

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +LA M+  +  ++    G D++       F             + + +            
Sbjct: 695 ILAHMSRCESMIRQLNQGGDIHSQCAVDLF-----------PEVAEAVANG--------- 734

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +             +    S   +     NF     +     A E     T    + 
Sbjct: 735 --SVVIDDAEAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRDMF 792

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             W      V     E+ Q    T      +                          GR 
Sbjct: 793 TRWNNSKKGVERWKAEIIQQARDTQHATSVL--------------------------GRH 826

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621
             +  + +    L   + +  R           ++Q  + DI    M+   +       G
Sbjct: 827 RRFPHIKHR---LRKYSGRSERAA------VNFVIQGSAADIAMMAMLRVDRDERLRRMG 877

Query: 622 YDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSN-----PSWAKGLPLKAEGYESKRY 673
           + IV+ VHDE++ E P +       ++  LM        P +   + L  +      +
Sbjct: 878 FKIVMQVHDEVILEGPAENATDAVPIVRDLMEHPFADIKPDYRMLINLDVDIATGTNW 935



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/358 (11%), Positives = 78/358 (21%), Gaps = 122/358 (34%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILF-AFG-----FDDHPVELWDCVHDPV-MPQVLKE 59
           D E    ++LT+           ++   AFG     F   P+   DC      +  + + 
Sbjct: 150 DTE-FWNVELTRNTPAH--SSGELLCLTAFGGGKLDFGSGPLLFVDCKGPSRHVLDLFRS 206

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSA---------- 108
             EN     + HN   +  VL   +   I +      T  LAR      +          
Sbjct: 207 YFENPAKRKIFHNFAADAHVL---YGHGITVRGLEADTRYLARLFDSSLSSWEDQVQPEK 263

Query: 109 ----------------------------LKAVGEALKLSSQKMEEGKELIARFC------ 134
                                       L    +       K  + K L++ F       
Sbjct: 264 PPLLLRKSKTSTTKEALIDEGGDIFSTPLNDCEQHSG--PGKGYQLKRLVSLFGIAPKEP 321

Query: 135 -----KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---------- 179
                K      +         E +  + +Y   D   T  +++RL              
Sbjct: 322 PSFKEKFAGRLGIGGLEAHCSEEKFGEWLKYAADDAYFTFMLYRRLTDTLRGQEWCTELH 381

Query: 180 ----------------------------------SKEQELWYLDQTINDRGYCVDVALAH 205
                                                +    L   I  RG+  +     
Sbjct: 382 WQPIREKIRHGTTTFNGMNDPETYTGLSMSDFAVKFYRPFTELLVEIERRGFGANREYLI 441

Query: 206 TLNQIVDVERTKLDQELESLTYG-------------LVSSSRCLEKLKTWLFLETGLH 250
                   +  +      ++                   + R  ++++  LF      
Sbjct: 442 QQLTAAQADLQRHKDAFRTIAQSLKDRRGQPLNPQAEFINPRSAKQIRQLLFGNPDEP 499


>gi|303271985|ref|XP_003055354.1| helicase/polymerase domain-containing protein [Micromonas pusilla
            CCMP1545]
 gi|226463328|gb|EEH60606.1| helicase/polymerase domain-containing protein [Micromonas pusilla
            CCMP1545]
          Length = 1996

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/746 (11%), Positives = 166/746 (22%), Gaps = 182/746 (24%)

Query: 31   ILFAFGFDDHP--VELWDCVHDPVMPQ--------VLKEALENTDVTIVAHNSYFERTVL 80
            +  A  F  +P  V     VH               +++ L  + V  V      +    
Sbjct: 1324 VGIALSFPFNPLAVFYAPIVHGAGGGGATRGLPWTRVRDVLSRSGVGKVTV----DLKPQ 1379

Query: 81   KACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEE-------------- 125
                     I    +   + A        L          +    +              
Sbjct: 1380 LRAMGAGATIAAPVVDVKIAAWVLHPDEELLKYSSQTGWDALNAVDPDRARGPCAGMLER 1439

Query: 126  -----GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-- 178
                   + I    K        D        A          D  V  ++     P   
Sbjct: 1440 FAGDVDADAIRAASKWRGPRATADGVNAGGANAAFAVASALSLDALVRAKLADPRAPSGL 1499

Query: 179  ----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----------E 223
                 + E  L  +  ++   G     A      +       +++ E             
Sbjct: 1500 EDALRAIEMPLVPVLASMERAGVAFAPATLSRQLRRATKRVREIETEAVAVVATHFACRH 1559

Query: 224  SLTYGLVSSSRCLEKLKTWLFLE----TGLHLEDLTETTCQ---------RVLS------ 264
                    +    + +   LF       G       + T            +L+      
Sbjct: 1560 PGMAPPEFNLASSDDVARVLFDAPPAGLGAEPPRGAKPTAARGRRSTRQDDLLALVREQG 1619

Query: 265  -------SNKKLTPQAIQVFNNRMR---ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
                             ++ +        ++S +          +   RLRG +     +
Sbjct: 1620 GPIAAFPKLVLEHRSLRKLLDEANEFGRLAKSELGGDAAAAADESVTIRLRGVIHQTN-T 1678

Query: 315  RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP-DPLQIISDCVRSCVIASEG 373
             TGR +      Q +PRP               +   S   D     +  +R+   A  G
Sbjct: 1679 GTGRLAMEDPNLQCVPRPREFALSRAYPERLSASGRVSPGTDAGAEETLAIRNAFRAPRG 1738

Query: 374  KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV---TTYARSFNVAPAQVTKDQRA 430
            KKL+  D   IE RV+A ++ ++  + A                +     P  V+ + RA
Sbjct: 1739 KKLIAFDYKQIELRVIAHLSCDRGLIAALCVRSVDPFKVIAARWKGDGTTPKNVSDEDRA 1798

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              K +   + Y  G   +Q+      + +                   E +   + ++  
Sbjct: 1799 KAKELCYGICYGAGVGRYQQ-----AMGVTELEARAAIEDFKRSLPGVERWKSALVKDAR 1853

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
            E                    +    V                     IA + R +P + 
Sbjct: 1854 E--------------------RTPPHVR-------------------TIAGRCRFLPSLN 1874

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                                                  R+            Q  + DI+
Sbjct: 1875 ATGAGGE-------------------------IRAADERKAI------NTACQGSAADIV 1903

Query: 611  AEGMMNATKA--------------------GYDIVLTVHDEIVCETPDTDEF-NASMLYH 649
               M+                           ++VL VHDE++ E  +         +  
Sbjct: 1904 KRVMIELHAKLTSGGGADDDDEWAPLREVDACEMVLQVHDELLFEVDERKVDVAVRAIRG 1963

Query: 650  LMTSNPS-WAKGLPLKAEGYESKRYR 674
            +M          +PL         + 
Sbjct: 1964 VMERAREVHDMKVPLPVRVSVGDDWG 1989


>gi|317487299|ref|ZP_07946094.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
 gi|316921489|gb|EFV42780.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6]
          Length = 626

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 97/704 (13%), Positives = 185/704 (26%), Gaps = 195/704 (27%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L  D ET   +D T    C  A+D  +   +F F    +             +L +    
Sbjct: 26  LLFDIETDGLLDETSTIHCICAKDF-LTGESFSFGPGEI--------EDGLGLLCQ---- 72

Query: 64  TDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG------EAL 116
               +VAHN   F+   ++   +  + + R   TL  +R     + LK +       ++ 
Sbjct: 73  -SRLLVAHNGLCFDIPAIQK-LHPSLLLPRLFDTLTASRLI--WTNLKDLDFTQLRKKSC 128

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRL 175
           +    K+     L A   +    +  Y +   N    W      YC+ DV V   +++ +
Sbjct: 129 RFPP-KLAGSHSLDAWGQRLGVMKGDYGKTTENAWSRWSEDMQRYCEQDVEVLEALYRHI 187

Query: 176 ------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL---------DQ 220
                     + E E   +       G   D   A +L   +  +R             +
Sbjct: 188 LDQRYSPEALALEHEFQAVIFHQERTGVWFDERAAQSLYAELAAKRNDAVTALQEVFPQK 247

Query: 221 ELESLT--------------------YGLVSSSRCLEKLKTWLFLETGLHL----EDLTE 256
            +E +                          +    +++   L  + G       +    
Sbjct: 248 RIEEIFIPKANNRTRGYVKGVPFTKVRYETFNPASRQQIADRLMEKHGWKPSEFTDTGQP 307

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGA 313
              + VL+S     P+   + +  +   +         N  ++ +  DGR+ G +   GA
Sbjct: 308 KVDEDVLASLP--FPECKPLVDY-LELLKIIGMLAEGKNGWLKLVGPDGRIHGRVITNGA 364

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
             TGR +        +P   +  +                           R+   A   
Sbjct: 365 -VTGRCTHNSPNLAQIPARGQYGK-------------------------QCRALFAAPPP 398

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
              V AD +G+E R+LA          A++ G    V                + R   K
Sbjct: 399 LVQVGADASGLELRMLAHYL------AAYDGGAYAKVLLEGDIHTANQHAAGLETRDNAK 452

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
               A  Y  G +    + +    +                                   
Sbjct: 453 TFIYAFLYGAGDEKLGSIVAPLASSA---------------------------------- 478

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                       +K  + +    +  L +++          G      KR  +  +    
Sbjct: 479 ----VQTKRGRALKDRFFRSLPAIKRLIDDVQ---------GVLTGPGKRPYLIGI---- 521

Query: 554 DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                      GR L  R   +                         ++Q+    ++   
Sbjct: 522 ----------DGRHLHIRSSHS---------------------ALNTLLQSAGAVLMKLA 550

Query: 614 MM----NATKAGYDI------VLTVHDEIVCETPDTDEFNASML 647
            +     A + G  +      VL VHDE    T          L
Sbjct: 551 TVIFHMEAQRRGLRLGEDYAQVLHVHDEAQFNTTPEKADALGKL 594


>gi|56693107|ref|YP_164694.1| hypothetical protein LP65_gp059 [Lactobacillus phage LP65]
 gi|54633608|gb|AAV35879.1| orf59 [Lactobacillus phage LP65]
          Length = 988

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 90/779 (11%), Positives = 193/779 (24%), Gaps = 238/779 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----------VHDP 51
             + IDFET +              +  + + +  + DH   +                 
Sbjct: 198 KIIGIDFETNTLESWRT--------NARMTMMSISWKDHQGVVIPIDKTGFQPFSEEEKQ 249

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---- 107
            +   + +  ++  +  V HN  F+ T+LK    LD    + I T V+    G       
Sbjct: 250 DIKHNVNQIFKSDKIWKVLHNGKFDITMLKDVNGLD-RSIKCIDTEVM-YYVGFSQAKKV 307

Query: 108 --ALKAVGEA--------------------------LKLSSQKMEEGKELIARFCKGETH 139
              LK +  A                               +K  +  EL  +       
Sbjct: 308 KKGLKQIARAFTDMGGYEQPLEEFKNEYLEKHYKNWYNAEIEKYRKALELEGKDPDKAKV 367

Query: 140 ECLYDR---------NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-- 188
                +                   +   Y   D  VT  +F ++     K +    L  
Sbjct: 368 SKKDYKAPTNEIDGGKFNYDWIDMEVQFPYAAADADVTLRLFNKMVGRIKKNRAWVNLVF 427

Query: 189 ---------DQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL----ESLTYGLVSSSRC 235
                      TI   G  +D+     L+      R  +  E+      +          
Sbjct: 428 NIFPRLNDALTTIEHNGIKLDMERNRELHDKYVKHRDDMKNEILSTIPEIKMIEKERLNF 487

Query: 236 --------------------------------------------LEKLKTWLFLETGLHL 251
                                                          +K  L+   G  L
Sbjct: 488 AMEREQIKKIKPADRTKEQKQKFKDYAKNCTGKDGVPNYKFKFTPNDMKRLLYDVLGYEL 547

Query: 252 ED--------------LTETTCQRVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVE 296
                            + +  +      ++    + I +++   +A  +    ++ L E
Sbjct: 548 PQEPPYVTGNPKNITWKSYSVGKAAQEYLEETYKTKFIDLYSKYSKAETALGSFIDKLPE 607

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
             + D  ++ +        +   S   F  QN  R + +  + +                
Sbjct: 608 VRDKDDFVKPSFNPYVTETSRLSSSGAFNAQNQTRRTDNPNDFNYSYG------------ 655

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +    RS     +G  L+  D + +E   +A ++ ++   +A    +D++    +  
Sbjct: 656 ---VKSMYRSRF---KGGILLNMDYSALEIYTMAMLSKDRNMTQALLDHKDIHKHNASLG 709

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F+V   +VTK+ R   K +   + Y  G K                              
Sbjct: 710 FHVPYDEVTKNLRTSAKKVSFGIPYSMGIKTL---------------------------- 741

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                           A +        +R+  A      +V +   +  +   +      
Sbjct: 742 ----------------AKDLGVDEKEAQRIYDAILATMPQVKQAMADSQEFAARYK---- 781

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                      +G      +V +    L     +  R+      
Sbjct: 782 ----------------------YAETLNGFRRDLSNVDS---ILKDVRAKAKRQA----- 811

Query: 597 LTENIVQAVSRDILAEGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                +Q    +I+  G+++  +          I+ TVHD I+ +    +      +  
Sbjct: 812 -FNTEIQGSGSNIVNLGLISVHEQFCKRNLKSKIIATVHDSILLDVYPPELAEVYAVVK 869


>gi|157111398|ref|XP_001651546.1| DNA polymerase theta [Aedes aegypti]
 gi|108878374|gb|EAT42599.1| DNA polymerase theta [Aedes aegypti]
          Length = 1987

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 88/686 (12%), Positives = 187/686 (27%), Gaps = 145/686 (21%)

Query: 26   EDVCVILFAFGF-----DDHP--VELWDCVHDPVMP-----QVLKEALENTDVTIVAHNS 73
            ++  +   AF F     DD    V   +      +       +L   LE  +VT+  +++
Sbjct: 1403 DNFYLSGAAFTFPEAGGDDSENVVYYVNLRKSGAVKCDQKKSMLGRLLERENVTVDMYDA 1462

Query: 74   YFERTVLKACFNLDIP---IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
              +  V+     L +    I       V          +  +     +  Q   E   L 
Sbjct: 1463 KEQLKVIYRSGLLSLEQEVIASLRDPKVACWLLQAEEKVIPLQA---MVQQYCPELTTLC 1519

Query: 131  ARFCKGETHECLYDRNKPNHREAW----RLFGEYCKGDVTVTR--EIFKRLEPLSSKEQE 184
                +                         F         +T+  ++ +  E L +  Q 
Sbjct: 1520 QMAGRCPGSTGPSSNYMSTIDAKIRCTVESFLVTHLIRAQITQFDQLDRTQEMLPTFVQR 1579

Query: 185  LWYL---DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
               +      +   G+  D      L + + V + ++ + + +L  G   +     ++  
Sbjct: 1580 EMPIHGALARMELVGFPADANKLAHLIERLKVAQERISERVRTLNGGRRLNFASTSEVAA 1639

Query: 242  WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
             L +    +       TC++VL      +P A  V   R   S  +   +  L  A+   
Sbjct: 1640 ALKVPRERNGRVK---TCRQVLEKI--DSPLATLVIAYRKIESNLSRT-IEPLYRAIRDG 1693

Query: 302  GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
             R+ G       + TGR S      Q + +                     + DP  +  
Sbjct: 1694 KRIYG--NSYCFTSTGRISMHEPNLQTVVK-----------------DFKVEIDPGHVEV 1734

Query: 362  DCVRSCV-IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               RS    +S  + L+ AD   +E  VL  ++ ++  L     G+D++    A+   + 
Sbjct: 1735 FSCRSTFACSSPDRILLSADFCQLELCVLTHLSQDRKLLAVMNGGKDVFRGIAAKWNRIE 1794

Query: 421  PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
               +  D+                                              +  A  
Sbjct: 1795 DEALVSDE-------------------------------------------LRNYTKAIV 1811

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
            +           A E          + + +   +  +    +++ Q   +          
Sbjct: 1812 YGVIYGMGAKSMAAELNVDEDMACTLMEQFHSTYPEIRRYADKVIQVTRE---------- 1861

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                               +   +GR      + +      +   +  R+          
Sbjct: 1862 ----------------RGYIETLTGRRRYLPAIHSTDMKKRS---EAERQA------VCT 1896

Query: 601  IVQAVSRDILAEGMMNATK--AGYD---------IVLTVHDEIVCETPDTDEFNASML-Y 648
             VQ  + DIL   ++   +    Y          +VL +HDE++ E P       + +  
Sbjct: 1897 TVQGSAADILKNAILRMMRNLRKYRQTLRLGQVELVLHMHDELIFEVPRDQSRKVAKILK 1956

Query: 649  HLMTSNPSWAKGLPLKAEGYESKRYR 674
              M +       LPL+ +      + 
Sbjct: 1957 SSMENCAK--LSLPLRVKVKMGASWG 1980


>gi|328782961|ref|XP_001120279.2| PREDICTED: DNA polymerase theta [Apis mellifera]
          Length = 1864

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 87/667 (13%), Positives = 184/667 (27%), Gaps = 128/667 (19%)

Query: 27   DVCVILFAFGFDDHPVELWDCVHDPVMP-------QVLKEALEN----------TDVTIV 69
            D  +   A  ++ +        ++  +        ++ KE L N           ++   
Sbjct: 1281 DKKLYGAAIAWESNIAYYISFSNEQDLKISGKEQMKLFKELLANTILYVKCFATKEIFKT 1340

Query: 70   AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALK----LSSQK 122
                      L  C  + I   +++   V                + +          +K
Sbjct: 1341 ----------LYECCGI-IASCKFLDPKVANWLYDGNIYEKTFNDMVKEYFPQGCFIIKK 1389

Query: 123  MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK-RLEPLSSK 181
            M    +     C          R       +W +        +    ++    L      
Sbjct: 1390 MGTCYDTGPGLCIKSAIPGEL-RACAEAVLSWHM----ADKLIDKLEQLSPTLLYTFKDI 1444

Query: 182  EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
            E ++  L   +   G  V +     L+ ++  E   L++   +L      +    +++  
Sbjct: 1445 EMKIIILLAYMELTGLGVCLKSLQDLSSVIREEMISLEERAYALCGKK-FNFSSSKEVGE 1503

Query: 242  WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
             L L  G  +     +  + VL   +   P    +  +  + + +    +  L+      
Sbjct: 1504 ILGLYKGKKI-----SVNKAVL--GQSDHP-ISNLVMSWRKLNVTKSKIIYPLLNLAQHS 1555

Query: 302  GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
             R+ G    + ++ TGR S      QN+PR                             +
Sbjct: 1556 SRIHGNC--VTSTLTGRISMHEPNLQNVPR--------------------DFNSKDNSFT 1593

Query: 362  DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              VR   I + G  ++ AD   +E R+LA  + +           D++    A+  +V+ 
Sbjct: 1594 ISVRMAFIPTVGNIILSADYCQLELRILAHFSKDTILCNIMRKPGDIFKNIAAKWNHVSE 1653

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
             +V    R   K +   + Y  G K   +      L+++         S    +     +
Sbjct: 1654 NEVDDKMRRHTKQLCYGMIYGMGVKTLAE-----NLSVDEVKAKEFLESFMNAYPGISKW 1708

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
               + E    +      +     R+       +        +  +    T   G A    
Sbjct: 1709 LNNVLEEARINGYITTIL--ERRRMFPGLTSINPMEKS---QAERQAVNTKVQGSAADIV 1763

Query: 542  KRRDV---PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            K+  +     +  +   +  I+   S R L       + S                    
Sbjct: 1764 KKAMIDIEKRMRFEFSTSLPIMPANSSRKLR------SNSKETQ---------------- 1801

Query: 599  ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSW 657
                                K GY +VL +HDE++ E    D    + +    M      
Sbjct: 1802 -------------------HKGGY-LVLQLHDELLYEVNIYDLRQVATIVKESMEQVCQL 1841

Query: 658  AKGLPLK 664
               LP+K
Sbjct: 1842 TVPLPVK 1848


>gi|261327618|emb|CBH10594.1| mitochondrial DNA polymerase I protein A,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 958

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/696 (12%), Positives = 170/696 (24%), Gaps = 170/696 (24%)

Query: 20  GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79
           G+      + V      + D  V ++       +   + E L    V IV  N+      
Sbjct: 304 GVNPELSHLEVSFLVVRWKD-DVIVYSAAVGLELLVRVAEEL--PGVEIVTFNAPCLLLP 360

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
           L +               ++       +      +  KL     ++              
Sbjct: 361 LLSYKQGKFFTSCVSDVRLMTWMLEPSADTAEFADYDKLLQSYQQQIGLPAGLNAAECKG 420

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                 ++  + E       Y +            L     +E+ +  +   +   G+ V
Sbjct: 421 SKEAVSHRVFYMEPLYRML-YGRLGS------HGLLPAFLKQEKRISIMCAAMKLNGFYV 473

Query: 200 DVALAHTLNQIVDVERTKLDQELE-SLTYGLVSSSRCLEKLKTWLFLETGLHL------- 251
           ++            +  KL  E    +      + +  +  +  L+    L         
Sbjct: 474 NLVEVDGFKARCAEKMEKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSKGT 533

Query: 252 -----------EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
                          + +T +  L        +  ++     + ++     +   +E   
Sbjct: 534 EGSTENNSLILTRGGKLSTSEETLRILA-RHHEFPRILIAYRKLAKLLQTYVVGFMEMAI 592

Query: 300 S----DG---------------------------RLRGTLQFLGASRTGRWSGCVFPPQN 328
                DG                           +L   L   G + TGR +      Q 
Sbjct: 593 PIEEGDGEFTDFSITEQGKEAIPNASDRHKAKWAKLHPNLVQEG-TETGRLTSVEPNMQA 651

Query: 329 LPR-------------------PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
           LPR                             +         SD    +     +R C+ 
Sbjct: 652 LPRSTQLVATHEKNNTNDADSENGNYENINGDVNAADAGGNESDGPVQEKEVSFIRRCLG 711

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A +G  LV  D   +E RVLA ++G+   +       D++ +     F      VT ++R
Sbjct: 712 APDGYSLVSLDYEQVELRVLAHLSGDSALINVLTKSGDIHRSIAEIIFRKTS--VTGEER 769

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           ++ K +   + Y  G                                             
Sbjct: 770 SLAKKVVFGILYGAGP-------------------------------------------- 785

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +         RV   ++     V      +                         
Sbjct: 786 RGLAQQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQCRS------------------- 826

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                  +  +   SGR     D+ +      T      R+          +VQ  + D+
Sbjct: 827 -------DGSVRTLSGRVRSIPDINDRVL---TKRSHAERQA------FNTVVQGSAADV 870

Query: 610 LAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638
           +  GM+   +           ++L VHDEI+   P+
Sbjct: 871 MKLGMIAVEREVLQPHAPDVRLLLQVHDEIILSVPN 906


>gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis]
          Length = 1711

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/676 (12%), Positives = 186/676 (27%), Gaps = 130/676 (19%)

Query: 26   EDVCVILFAFGFDDHPVELWDC----VHDPVMPQVLKEALE--NTDVTIVAHNSYFERTV 79
            +D  ++  +  +    V   D        P + + ++   E  + DV  +A     +   
Sbjct: 1127 KDPKLVGLSLCWSPTVVYYLDIQILKTRHPSVIEDIQNIFESFDEDVIQIAFCIKDQFKW 1186

Query: 80   LKACFNLDIPI-HRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCK 135
            +       +   + W   ++ +           L ++ E        + +  +      +
Sbjct: 1187 MLNSGVHGVTTSNNWQDPMIASWLMDPDNIKQGLFSLVEHYCSEHLYLFQDTKYDWDVNR 1246

Query: 136  GETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ------ELWYLD 189
                    ++              Y      +  ++ ++L  ++  +          Y  
Sbjct: 1247 PSYTSVSSEKVCC-----VESIASY-----ILMLQLEEQLSGMNMWQHFTGVEMPHMYCV 1296

Query: 190  QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
              +   G  VD +L       +      L ++   +      +    +++   LF E  L
Sbjct: 1297 ALLELNGIEVDNSLLKRYRLELHSASLALQEKAWKILGRK-FNLSNPKEVSKVLFQELRL 1355

Query: 250  HLEDLTETTCQRVLSSNKKLTPQAIQVFNNR---MRASRSAVLKLNTLVEAMNSDGRLRG 306
                                      + + R      ++  +L +N+L  +    GRL  
Sbjct: 1356 XXX------XXXXXXXXXXXXXXYPCIMSWRTVNYALNKV-ILLINSLPPSC---GRLHH 1405

Query: 307  TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                L  + TGR        Q++P+                 +  S  +     S C+R+
Sbjct: 1406 KC--LTLTNTGRMIMSEPNIQSIPK-------------QFSITKGSKSEADSEQSFCLRN 1450

Query: 367  CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA---PAQ 423
              +A  GK L+ AD + IE R+LA ++G++  + AF +       + A  F         
Sbjct: 1451 IFVAGNGKLLISADYSQIELRILAHLSGDETLIAAFNSSGVDIFKSIAAMFYSEISSIDD 1510

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            VT  QR   K     + Y  GA+   +      +N +        +S    +   + +  
Sbjct: 1511 VTDKQRDTTKQTCYGILYGMGAQTLAQ-----QMNTSETDAQNAMDSFMNSYPMVKVYFN 1565

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS----ELWNELHQAFEQTIENGKAII 539
             +     E    +   G          R+    +     ++ +   +    +   G A  
Sbjct: 1566 RLVAQCKEKGYIETISGR---------RRYLPEIKSVRLKMRSHAERQAVNSTIQGSAAD 1616

Query: 540  ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
              K     +           L                 +  NTT                
Sbjct: 1617 IVKMATYKIHCAVASLGWNTLH--------------QNTRSNTT---------------- 1646

Query: 600  NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWA 658
                                  + +V  +HDE++ E  +       S++   M       
Sbjct: 1647 ---------------------DFFLVHHIHDELIYEVDEKKLHEAVSVIERCMVDAFP-- 1683

Query: 659  KGLPLKAEGYESKRYR 674
              + L       K + 
Sbjct: 1684 MSVKLAVRIKVGKLWG 1699


>gi|198451642|ref|XP_001358456.2| GA19301 [Drosophila pseudoobscura pseudoobscura]
 gi|198131580|gb|EAL27595.2| GA19301 [Drosophila pseudoobscura pseudoobscura]
          Length = 2054

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 99/663 (14%), Positives = 196/663 (29%), Gaps = 126/663 (19%)

Query: 30   VILFAFGFDDHPVELWDC--VHDPVMPQVLK-----EALENTDVTIVAHNSYFERTVLKA 82
            +   +F   D+ V            +P  LK     + ++  ++T++ H++  +   L  
Sbjct: 1493 IAGLSFCLADNVVYYMCMQEEEGQQVPTRLKVQELCKLMDRPELTLLVHDAKEQLKALLH 1552

Query: 83   ----CFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                  N+ I   R     V           + K +        Q   E   L      G
Sbjct: 1553 GVPQLHNIGI---RVEDPKVGNWLLEPEKTFSFKNMC------QQFAPECTALANLCGSG 1603

Query: 137  ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---EQELWYLDQTIN 193
              +      +        R   E C     VT  I K       +   E  +  +   + 
Sbjct: 1604 RGYSSHGLDSSSAILPKLRASIEAC-----VTVHILKGQIENLERIEVEMPIQIVLCRME 1658

Query: 194  DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
              G+         L + +     K++ ++  +      +    + +   L L        
Sbjct: 1659 CVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKMHGSK-FNLGSTQAVANVLGLHRK---PH 1714

Query: 254  LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
               +T ++VL       P +  + N+R + +   V  +  L+       R+ G      A
Sbjct: 1715 GRVSTSRQVLEKLGS--PISELILNHR-KLNMQIVKGMQPLIR-CCKANRIHGHSITHTA 1770

Query: 314  SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SE 372
            +  GR S      QN+        ++      +  S               RS   +  E
Sbjct: 1771 T--GRISMSEPNLQNV----AKDFDIRMGPDSVRISC--------------RSVFKSMDE 1810

Query: 373  GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
             + L+ AD   +E R+LA ++ ++  +    + +DL+    A   ++  A+VT+  R+  
Sbjct: 1811 KRCLLSADFCQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNHIPEAEVTEQMRSGT 1870

Query: 433  KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
            K +   + Y  G ++         L        +      + +     +   + +   + 
Sbjct: 1871 KQICYGIVYGMGMRSLGD-----ALQCTESEAQLICEQFHQSYPGIRAYTEKVLKFARKL 1925

Query: 493  AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
               +   G    R        +S    L  +  +    T   G A    KR         
Sbjct: 1926 GYVETITGR--RRYLD---HINSGEQNLIKQAERQAVNTTIQGSAADIAKR--------- 1971

Query: 553  KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                 L +    GR   ++ +G                        EN +Q         
Sbjct: 1972 ---AILDMDKNIGR--YWKKLGVE----------------------ENSIQ--------- 1995

Query: 613  GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESK 671
                       +VL +HDE+V E P+      +    L M S       +PLK +    +
Sbjct: 1996 -----------LVLHIHDELVYEVPEAKAKRIAKFLGLTMESIGKGKLTVPLKVKIKMGE 2044

Query: 672  RYR 674
             + 
Sbjct: 2045 SWG 2047


>gi|15487835|gb|AAL00966.1|AF401678_1 DNA polymerase I [Lactobacillus sakei]
          Length = 343

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 105/357 (29%), Gaps = 41/357 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
             +I F  G  DH    W    D  +     LK+ LE+               V      
Sbjct: 22  ADLIGFYIGAPDH----WYVSDDVALLAEPVLKDWLEDASHPKAVFGVKR-TQVAANRLG 76

Query: 86  LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           + +        L+ +      +    +G    L   +  +  E +      +        
Sbjct: 77  VHLAGVD-FDLLLASYLLNTTNNSNDLGTVANLHEYQNVQTDEAV-YGKGAKRAVPTEPA 134

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
               H         + +  +    +  ++ +  +  E  L  +   +   G  VD +   
Sbjct: 135 LLYQHLVQKAAAIYHLQPQLEEQLKEHQQFDLFTDMELPLALVLAQMEITGIRVDASRLQ 194

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRV 262
            +          L++++ +       +    ++L   LF + GL +   T+   +T   V
Sbjct: 195 QMGSEFSQTLKILEEKVYAEAG-ETFNINSPKQLGVILFEKMGLPVVKKTKTGYSTAVDV 253

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
           L   +K  P    + + R   ++     +  L+++++ D ++         ++TGR S  
Sbjct: 254 LEQLRKDAPIVQTILDYRQ-IAKIQSTYVEGLLKSIHQDNKVHTRYLQ-TLTQTGRLSSV 311

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVV 378
               QN+P       +                         +R   + S    ++  
Sbjct: 312 DPNLQNIPVRLAEGRK-------------------------IRQAFVPSHPDWQMFA 343


>gi|167392000|ref|XP_001739984.1| DNA polymerase I [Entamoeba dispar SAW760]
 gi|165896117|gb|EDR23624.1| DNA polymerase I, putative [Entamoeba dispar SAW760]
          Length = 651

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 94/638 (14%), Positives = 182/638 (28%), Gaps = 148/638 (23%)

Query: 55  QVLKEALENTDVTIVAHNS-----YF--ERTVLKACFNLDIPIHRWICTLVLARSNGLPS 107
           + L + + N+   I+ HN       +  +   +   FN +   +R   T + A +    S
Sbjct: 136 KDLLKEIINSKRLIIVHNLIEEIKNYRNDIKCVLENFNTN---NRIFDTYIGASTIDPGS 192

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
                            +G+         E        NK    E  +   +    +V +
Sbjct: 193 ----------------VDGQTFNQICLVYEVII-----NKSTTEERLKQTRKLALKEVEI 231

Query: 168 TREIFKRLEPLSSKEQELWYLDQTIND-RGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             + +  ++    +E  +  +   +N    + +D  L +   +++  E+ K++ E + + 
Sbjct: 232 MNK-YNMIKVFQEQEMIIEGVLIEMNYCNEFKIDDKLLNEQRKVLIEEQNKIEIETKKII 290

Query: 227 YGLVSSSRCLEKLKTWLFLET-GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              + +    E++K  L     G+       TT +++LS      P A  V   R + S+
Sbjct: 291 GKTI-NLSSPEQVKKELIRYNIGIDGVKKKATTDKKILSQ--SGHPFAKLVLEYR-KISK 346

Query: 286 SAVLKLNTLVEAMNSDG--RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                +  +       G      T     A  TGR        Q +P+            
Sbjct: 347 LLSGVIEQIRRCCIKTGDEYFIRTKWSQTAITTGRIQSKNPNLQQIPK------------ 394

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                        LQ      R   I       V  D   IE R+LA    +   ++ F+
Sbjct: 395 ---------QAFSLQQFVVIPRDLFITHNNNTFVAIDYNQIELRILANFTKDHHLIEFFK 445

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +  D++    A         +T  +R   K +                    G+   + A
Sbjct: 446 SNIDIHKLIAAHWLKKNVNDITDGERRKAKTIVYGCI--------------YGIGPFSLA 491

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
             +                                     +   +++  +     +   E
Sbjct: 492 DQLHI------------------------------SLDESKTFLESFLDQFPSFKKWKEE 521

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           +      T       I  +RR +  +    DK  L                         
Sbjct: 522 IITNASTT--GFVHTINNRRRRINNLTDSSDKKTL------------------------- 554

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETP 637
             +  R          + +Q  + DI+   M+   K       G  ++L +HDEIV E P
Sbjct: 555 -AESKRIA------VNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEVP 607

Query: 638 DTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           D         L +LM         +PL       K++ 
Sbjct: 608 DHLLDEVCVTLKYLMEHIVQ--LEVPLVVTVETGKKWG 643


>gi|72388042|ref|XP_844445.1| mitochondrial DNA polymerase I protein A [Trypanosoma brucei
           TREU927]
 gi|62359390|gb|AAX79828.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei]
 gi|70800978|gb|AAZ10886.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma
           brucei brucei strain 927/4 GUTat10.1]
          Length = 958

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/696 (12%), Positives = 172/696 (24%), Gaps = 170/696 (24%)

Query: 20  GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79
           G+      + V      + D  V ++       +   + E L    V IV  N+      
Sbjct: 304 GVNPELSHLEVSFLVVRWKD-DVIVYSAAVGLELLVRVAEEL--PGVEIVTFNAPCLLLP 360

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
           L +               ++       +      +  KL     ++              
Sbjct: 361 LLSYKQGKFFTSCVSDVRLMTWMLEPSADTAEFADYDKLLQSYQQQIGLPAGLNAAECKG 420

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                 ++  + E       Y +            L     +E+ +  +   +   G+ V
Sbjct: 421 SKEAVSHRVFYMEPLYRML-YGRLGS------HGLLPAFLKQEKRISIMCAAMKLNGFYV 473

Query: 200 DVALAHTLNQIVDVERTKLDQELE-SLTYGLVSSSRCLEKLKTWLFLETGLHL------- 251
           ++            +  KL  E    +      + +  +  +  L+    L         
Sbjct: 474 NLVEVDGFKARCAEKMEKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSKGT 533

Query: 252 -----------EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
                          + +T +  L        +  ++     + ++     +   +E   
Sbjct: 534 EGSTENNSLILTRGGKLSTSEETLRILA-RHHEFPRILIAYRKLAKLLQTYVVGFMEMAI 592

Query: 300 S----DG---------------------------RLRGTLQFLGASRTGRWSGCVFPPQN 328
                DG                           +L   L   G + TGR +      Q 
Sbjct: 593 PIEEGDGEFTDFSISEQGKEAIPNASDRHKAKWAKLHPNLVQEG-TETGRLTSVEPNMQA 651

Query: 329 LPRPS-------------------RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
           LPR +                    +      +         SD    +     +R C+ 
Sbjct: 652 LPRSTQLVATHEKNNTNDADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRCLG 711

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A +G  LV  D   +E RVLA ++G+   +       D++ +     F      VT ++R
Sbjct: 712 APDGYSLVSLDYEQVELRVLAHLSGDSALINVLTKSGDIHRSIAEIIFRKTS--VTGEER 769

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           ++ K +   + Y  G                                             
Sbjct: 770 SLAKKVVFGILYGAGP-------------------------------------------- 785

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +         RV   ++     V      +                         
Sbjct: 786 RGLAQQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQCRS------------------- 826

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                  +  +   SGR     D+ +      T      R+          +VQ  + D+
Sbjct: 827 -------DGSVRTLSGRVRSIPDINDRVL---TKRSHAERQA------FNTVVQGSAADV 870

Query: 610 LAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638
           +  GM+   +           ++L VHDEI+   P+
Sbjct: 871 MKLGMIAVEREVLQPHAPDVRLLLQVHDEIILSVPN 906


>gi|316973920|gb|EFV57463.1| DNA polymerase I domain protein [Trichinella spiralis]
          Length = 1661

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 95/709 (13%), Positives = 197/709 (27%), Gaps = 156/709 (22%)

Query: 5    FIDFE--TRSPIDL---TKCGICKYAEDVCVILFAFGFDDHPVELW-------------D 46
             +D E  T     L       I  Y         A  +D   V +               
Sbjct: 1045 ALDIENCTACHSKLHSRKSTKISNYT-------VAVCWDLQNVYVLTGEFKIVSEFVGDG 1097

Query: 47   CVHDPVM-PQVLKEALE--NTDVTIVAHNSYFERTV------LKACFNLDIPIHRWICTL 97
            C        ++LK  L   ++   +V +N    R V      L      +      + T 
Sbjct: 1098 CEAGEKDKVKLLKMILTPNDSSKVVVFYNL---RKVIPLLFELYKNEAFEFQNRLCLTT- 1153

Query: 98   VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
              +       +   V +AL L+     +   L + +    ++              +   
Sbjct: 1154 -ASWILNPDGSYWDV-KAL-LTEYSPHDLNILQSSWNNDSSNSSTSCFQSAATNVLYPKI 1210

Query: 158  GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
             E          +         + E    Y+   I   G   +V L   ++  +  +  +
Sbjct: 1211 FEI--------LKKKNLWNAFLNIELPAQYVVGNIESAGIGFNVDLCMAMSTCLKNKLNE 1262

Query: 218  LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED------------LTETTCQRVLSS 265
            L+ E          S    +++   LF E  L   D               +T + VL +
Sbjct: 1263 LEAEAAKEAGHR-FSLNSPKEVSKVLFYELQLPPPDESKVSRRRFTSVKQYSTAKHVLEN 1321

Query: 266  NKKLTPQAIQVFNNRMRASRSAVLKLNTLVE---AMNSDGRLRGTLQ------FLGASRT 316
              +L P    +   R   S +    +  L+     + ++     + Q      +   + T
Sbjct: 1322 LAQLHPLPGIILEFRQ-LSAALTNYIYPLLRINRYLCTNCNCVFSTQERIIGKYDWYTAT 1380

Query: 317  GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
            GR        Q +P+                        P    +  +R   +ASEG  L
Sbjct: 1381 GRLIMHEPNLQIVPK--------------------FLEIPNGNNTLHIREIFVASEGCTL 1420

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
            + AD + +E R+LA ++ +   +K  +   D++    A+  ++  + V + QR   K + 
Sbjct: 1421 LSADFSQLELRILAHLSNDSKLIKILKEKIDVFTEIAAKMNSIDRSAVNEIQRNRAKQIC 1480

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             AL Y    K+         L  +    +   N+  + + D   +     E         
Sbjct: 1481 YALIYGMCPKSLAAE-----LGTDEEQAIQFYNNFKKLFPDVTRWLIETTEKCRSRGFCV 1535

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                                    +  +  +         +      R      ++   +
Sbjct: 1536 TLANR----------------VRYFAAIRSSA-------TSDKLHAERQAINTTVQGSAS 1572

Query: 557  NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
            ++  +      L   D       +N                     Q ++          
Sbjct: 1573 DIFKIALRKVYLALDDYTKKNGQMNNA-------------------QTLA---------- 1603

Query: 617  ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
                   I+  +HDE++ E  +++    + +    M +  S    LP++
Sbjct: 1604 ------KIIFQIHDELMLEVTNSNVEAVATIVKHSMETAVSLRVDLPVR 1646


>gi|126015340|gb|ABN70701.1| DNA polymerase 1 [Salmonella phage SETP7]
 gi|126015342|gb|ABN70702.1| DNA polymerase 1 [Salmonella phage SETP11]
          Length = 267

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 114/262 (43%), Gaps = 34/262 (12%)

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAP-EEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             + A T                      ++A+   R  +++     I D  +   C+ +
Sbjct: 6   LIEXAKTMAGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWRTCDAI 65

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENG---------------KAIIARKRRDVPLVYM 551
           K+ WR+ H +    W +L       + N                +AI   +  ++     
Sbjct: 66  KRMWRESHPQTVAFWRDLKDGILAAVRNPGRDFWAGANIRSNGERAIRIWRTTEIDSSGR 125

Query: 552 KKDKNNLILMLPSGRSLVYRDVGNNRS------------------YLNTTTRQLTREYTY 593
                 L + LPSGR L Y  +G + +                    N  TRQ T  YT+
Sbjct: 126 NIPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRVNTNVRIKYQGENQLTRQWTTLYTH 185

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS 653
           GGK  ENIVQA  RD+LA  M+NA   GY IVL+VHDE+VCETPDT ++  + L  LM +
Sbjct: 186 GGKACENIVQAFCRDLLAYAMLNAEAGGYPIVLSVHDELVCETPDTPDYTVAELEKLMCA 245

Query: 654 NPSWAKGLPLKAEGYESKRYRK 675
            P WA+G PL AEG E KRY K
Sbjct: 246 LPEWAEGFPLVAEGAELKRYAK 267


>gi|21929659|gb|AAM81962.1|AF445376_1 DNA polymerase I-like protein A [Trypanosoma brucei]
          Length = 958

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 83/696 (11%), Positives = 171/696 (24%), Gaps = 170/696 (24%)

Query: 20  GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79
           G+      + V      + D  V ++       +   + E L    V IV  N+      
Sbjct: 304 GVNPELSHLEVSFLVVRWKD-DVIVYSAAVGLELLVRVAEEL--PGVEIVTFNAPCLLLP 360

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
           L +               ++       +      +  KL     ++              
Sbjct: 361 LLSYKQGKFFTSCVSDVRLMTWMLEPSADTAEFADYDKLLQSYQQQIGLPAGLNAAECKG 420

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                 ++  + E       Y +            L     +E+ +  +   +   G+ V
Sbjct: 421 SKEAVSHRVFYMEPLYRML-YGRLGS------HGLLPAFLKQEKRISIMCAAMKLNGFYV 473

Query: 200 DVALAHTLNQIVDVERTKLDQELE-SLTYGLVSSSRCLEKLKTWLFLETGLHL------- 251
           ++            +  KL  E    +      + +  +  +  L+    L         
Sbjct: 474 NLVEVDGFKARCAEKMEKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSKGT 533

Query: 252 -----------EDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
                          + +T +  L        +  ++     + ++     +   +E   
Sbjct: 534 EGSTENNSLILTRGGKLSTSEETLRILA-RHHEFPRILIAYRKLAKLLQTYVVGFMEMAI 592

Query: 300 S----DG---------------------------RLRGTLQFLGASRTGRWSGCVFPPQN 328
                DG                           +L   L   G + TGR +      Q 
Sbjct: 593 PIEEGDGEFTDFSISEQGKEAIPNASDRHKAKWAKLHPNLVQEG-TETGRLTSVEPNMQA 651

Query: 329 LPRPS-------------------RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
           LPR +                    +      +         SD    +     +R C+ 
Sbjct: 652 LPRSTQLVATHEKNNTNDADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRCLG 711

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
             +G  LV  D   +E RVLA ++G+   +       D++ +     F      VT ++R
Sbjct: 712 VPDGYSLVSLDYEQVELRVLAHLSGDSALISVLTKSGDIHRSIAEIIFRKTS--VTGEER 769

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           ++ K +   + Y  G                                             
Sbjct: 770 SLAKKVVFGILYGAGP-------------------------------------------- 785

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +         RV   ++     V      +                         
Sbjct: 786 RGLAQQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQCRS------------------- 826

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                  +  +   SGR     D+ +      T      R+          +VQ  + D+
Sbjct: 827 -------DGSVRTLSGRVRSIPDINDRVL---TKRSHAERQA------FNTVVQGSAADV 870

Query: 610 LAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638
           +  GM+   +           ++L VHDEI+   P+
Sbjct: 871 MKLGMIAVEREVLQPHAPDVRLLLQVHDEIILSVPN 906


>gi|71898989|ref|ZP_00681155.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71731235|gb|EAO33300.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 199

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 83/200 (41%), Positives = 104/200 (52%), Gaps = 11/200 (5%)

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            +W + N             AC+  K+AWR  H  ++  W  L  A    I + +     
Sbjct: 4   LQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETA--- 60

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGG 595
                  + ++  +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGG
Sbjct: 61  --HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGG 118

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP 655
           KL ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P
Sbjct: 119 KLVENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPP 178

Query: 656 SWAKGLPLKAEGYESKRYRK 675
            WA+GLPL AEG+E+ RYRK
Sbjct: 179 PWAQGLPLAAEGFETHRYRK 198


>gi|255551068|ref|XP_002516582.1| DNA polymerase theta, putative [Ricinus communis]
 gi|223544402|gb|EEF45923.1| DNA polymerase theta, putative [Ricinus communis]
          Length = 2154

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 96/718 (13%), Positives = 184/718 (25%), Gaps = 192/718 (26%)

Query: 29   CVILFAFGFDDHPVELWDCVHDPVMPQV----LKE--ALE-----NTDVTIVA------- 70
             +   A  +++ P+   +   D + P      L+    LE        +  +        
Sbjct: 1506 EIHGMAICWENSPIYYVNLPKDLLCPDNQKYVLRPENWLEIVRHRWNRIGKIMGKREVIK 1565

Query: 71   --HNSYFERTVLKACF------------NLDIPIHRWICTLVLARS----NGLPSALKAV 112
               N   +  VLK                 D+ +   I +   +        +   +   
Sbjct: 1566 FTWNLKIQIQVLKNAVVSIHRFGSTNLSGKDLDLE-LIDS---SHLPLPQINVTEGIDMC 1621

Query: 113  --GEALKLSSQKME---EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
                 L    ++       KE+  R           +RN     +  R     C   V  
Sbjct: 1622 IVAWILWPDEERSSNPNLEKEVKRRL--PTQAVAAANRNGRWKNQMRRAAHNGCCRRVAQ 1679

Query: 168  TREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
            TR +   L  L             E  L  +   +   G  VD+        ++  +   
Sbjct: 1680 TRALCSVLWKLLISEGLVEALKKIEMPLVNVLADMELWGIGVDMEACLRARNVLGKKLRH 1739

Query: 218  LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE------DLTETTCQRVLSSNKKLTP 271
            L+++   L      S      +   L+    L +        L  +T +  L   +K   
Sbjct: 1740 LEKKAYELAGMT-FSLYTAADIANVLYGRLKLPIPEGHGKGKLHPSTDKHCLDLLRKKYC 1798

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
                +F   + A                           +           V   + L R
Sbjct: 1799 CFAFMFYATIAAL---------------------KLGLLMLFFLILMILIWVSEIKVLLR 1837

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISDCV--RSCVIA-SEGKKLVVADLAGIEARV 388
             +    +  + +     S+  +    +  +  +  R   I   E   L+ AD + IE R+
Sbjct: 1838 TNLGVMQCVEHMVEFKISMDKNGGDAEANNYKINAREFFIPTQENWLLLTADYSQIELRL 1897

Query: 389  LAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
            +A  + +   ++   +   D++    AR    A   V   +R   K +   +        
Sbjct: 1898 MAHFSKDASLIELLSKPHGDVFTIIAARWTGKAEESVASLERDQTKRLVYGIL------- 1950

Query: 448  FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                                                         A +            
Sbjct: 1951 -------------------------------------YGMGANTLAQQLECSSDEAAEKI 1973

Query: 508  KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
            K+++     V+     LH+A     +NG     +                       GR 
Sbjct: 1974 KSFKSCFPGVASW---LHEAVASCRKNGYVETLK-----------------------GRK 2007

Query: 568  LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--------- 618
                 +    S   +   +  R+         +I Q  + D++   M+N           
Sbjct: 2008 RFLSKIKFGNSKEKS---KAQRQA------VNSICQGSAADLIKIAMINIYSVIARVDGP 2058

Query: 619  -------------KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAKGLP 662
                         K    I+L VHDE+V E  P   +  AS+L   M +  S    +P
Sbjct: 2059 DPSSSLATKFHMLKGRCRILLQVHDELVLEVDPPVIKEAASLLQAGMENAASL-LDMP 2115


>gi|308808137|ref|XP_003081379.1| helicase and polymerase containing protein TEBICHI (ISS)
            [Ostreococcus tauri]
 gi|116059841|emb|CAL55548.1| helicase and polymerase containing protein TEBICHI (ISS)
            [Ostreococcus tauri]
          Length = 1489

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/643 (10%), Positives = 145/643 (22%), Gaps = 164/643 (25%)

Query: 92   RWICTLVLARSNGLPS------ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
              +   + A      +      +   +     +        + L++ F            
Sbjct: 916  PCVDVRIAAWLLRPSAPEVQSSSRDDL--VHGMDP-----TEPLMSLFSAELDSAKSGVD 968

Query: 146  NK----------PNHREAWRLFGEYC---KGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                          H +        C      +    E    +  L   E         +
Sbjct: 969  TACLLLERKGRSYEHLKPLSRAVASCFLMGRFLWEECEAKDLIRALIRVEMPFVAPIVAM 1028

Query: 193  NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC-------LEKLKTWLFL 245
                   D          +D    KL++  +   +                  L   L+ 
Sbjct: 1029 ETVKVPFDPRRLKEEIAAMDDRLKKLEEYAKKQKWLDPLHPANLRRAFTDNAYLVKCLYE 1088

Query: 246  ETGLHLEDL-------------------TETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
               L                        T+TT ++V   +  + P    +  +R    R 
Sbjct: 1089 HLKLTPPAGSELAFTKDWVSNAKECTVSTKTTYEKVHEQSGHMFPLL--ILEHRSVFKRL 1146

Query: 287  AVLKLNTLVEAMNSDGRLRGTLQFLGASRT-GRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                 + L+         R        +   GR +       ++                
Sbjct: 1147 --TFADVLLGMYGESMDSRIRYSIHQTNHDCGRLTHIEPNFHSM---------------A 1189

Query: 346  LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK------L 399
                     D L      VRS       +  +  D + +E RV+A  +G+Q         
Sbjct: 1190 HDMKCVDAFDGLDAPVISVRSAFTPPADRVFLRVDYSHLELRVMAHFSGDQTLIALLQNP 1249

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            +     +D +     +   V    V+ D+R   K +   + Y  G K             
Sbjct: 1250 EPVNAHDDPFTMLACKWRGVPLNAVSVDERQRVKNLVYGILYGSGVKRL----------- 1298

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                             A E        + +    +     +  
Sbjct: 1299 ---------------------------------ARELRLSDEKAKILVDELKSMLPTLMN 1325

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
              +++     +                       +K    +   S R   + ++ +    
Sbjct: 1326 WRDDVVARAIE-----------------------EKPIPRVTTISSRHRYFPELLSRSGD 1362

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--------AGYDIVLTVHDE 631
              +      R+          + Q  + DI    ++   +            +VLTVHDE
Sbjct: 1363 ERSA---AERQA------VNTVCQGSAADIFKTAVVLVMETLRAKHLLDRCQLVLTVHDE 1413

Query: 632  IVCETPDTDEFNASMLYH-LMTS-NPSWAKGLPLKAEGYESKR 672
             V E   +    A+ +    M S    +   +PL  +      
Sbjct: 1414 AVFEVNASVAKAAARIVRNTMESVAGVFNLSVPLPVKAQIGPS 1456


>gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 614

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 62/236 (26%), Gaps = 39/236 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         D      + +  
Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA 115
           +   EN +   V  N  ++  VL+    +         T++            +  + E 
Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNYGAVV--KGPLFDTMIAHYVLQPELRHGMDYLAEI 484

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +     ELI                K       +    Y   D  +T ++   L
Sbjct: 485 YLH--YQTIHIDELIG---------PKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVL 533

Query: 176 EPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           E               E  L  +   I   G  +D       +     +  ++++E
Sbjct: 534 EKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKE 589


>gi|145350924|ref|XP_001419843.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580075|gb|ABO98136.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 460

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/512 (12%), Positives = 133/512 (25%), Gaps = 121/512 (23%)

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              E         +       D          +D    KL++   +  + ++ SS  + +
Sbjct: 1   MEIEMPFVAPIVAMQTVRIPFDARKMREEMATMDDRLKKLEEYALTQKWIVLDSSVSIAR 60

Query: 239 L--------KTWLFLETGLHLEDLTETT-CQRVLSSNKKL--TPQAIQVFNNRMRASRSA 287
                    +  L+    L      +T+     L    +    P  + +  +R       
Sbjct: 61  RALTNNTYLQDRLYKHLKLTPPPGAKTSIDANNLRKLYEQSNHPFPLLIIEHRSVFK--R 118

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
               +T++     D R+R ++        GR +       +L                  
Sbjct: 119 RGFADTILGMYADDSRIRYSIFQTNH-DCGRLAHSEPNFHSL---------------AHD 162

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
            +       L      +RS  +    K  V AD + +E R++A  +G++  +   +  E 
Sbjct: 163 MTCGDQFYGLDAPKISIRSAFVPPAAKVFVRADYSQLELRIMAHFSGDRTLIHMLQNPEP 222

Query: 408 ------LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
                  +    ++ +  AP  V  ++R   K +   L Y  GAK               
Sbjct: 223 NNLKDDPFTMLASKWYRKAPDTVLAEERTNCKNLVYGLLYGSGAKKLAS----------- 271

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                            +      A +     ++    R+ E  
Sbjct: 272 ---------------------------------DLRMCEEAAKSEVARFKSMLPRLMEWL 298

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
           + +     +     +                           S R   + D+ +     N
Sbjct: 299 DGIVIRAREEKPIARVTTI-----------------------SARHRYFPDLHSKN---N 332

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--------AGYDIVLTVHDEIV 633
                  R+          + Q  + DI    ++                +VLTVHDE V
Sbjct: 333 DDRAAAERQA------VNTVCQGSAADIFKTAVVRVIDTLRTKYLIERCQLVLTVHDECV 386

Query: 634 CETPDTDEFNASMLYH-LMTS-NPSWAKGLPL 663
            E         + +    M S    +   +PL
Sbjct: 387 FECDARSAKAIAQIVRHAMESVANEFNLAVPL 418


>gi|195113811|ref|XP_002001461.1| GI21961 [Drosophila mojavensis]
 gi|193918055|gb|EDW16922.1| GI21961 [Drosophila mojavensis]
          Length = 2181

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/678 (13%), Positives = 191/678 (28%), Gaps = 135/678 (19%)

Query: 26   EDVCVILFAFGFDDHPVELWDCVHD------------PVMPQVLKEALENTDVTIVAHNS 73
            +   +   AF  +D+ V   +   +             +  Q L   L   D+T+++H++
Sbjct: 1603 DSSYLAGIAFCLNDNVVYYMNMQPEEEQQQQQQQVGSELKVQQLSSLLSRQDLTLLSHDA 1662

Query: 74   YFERTVLKACFN--LDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
              +  VL+       DI +       V          L        +  Q   E   L  
Sbjct: 1663 KEQLKVLRQAVPQLNDIQVL-LEDPKVANWLLQPDKTL----SFHNMCQQFAPECGALAN 1717

Query: 132  RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---------- 181
                G  +               R   E C     VT  I         +          
Sbjct: 1718 LCGSGRGYSSFGLDASSAIMAKVRASIEAC-----VTVHILNGQLENLERIGTGQLLKFF 1772

Query: 182  ---EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
               E  +      +   G+         L Q +     +L+ ++  L      +    + 
Sbjct: 1773 RELEMPIQMSLCHMECIGFPAKEHSLQRLFQQMMATMKRLESKIYELHGSR-FNLGSTQA 1831

Query: 239  LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
            +   L L       +   +T +++L      +P +  + N R + S      +  L++  
Sbjct: 1832 VAKVLGLHRKA---NGRVSTSRQILEKI--DSPISQLILNYR-KLSMLLAKSMQPLLKCC 1885

Query: 299  NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             ++   R   Q +  + TGR S      QN+ +                          +
Sbjct: 1886 QAN---RVHGQSITYTATGRISMSEPNLQNVAK------------------DFHIELGKE 1924

Query: 359  IISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
             +    RS      E + L+ AD   +E R+LA ++ ++  L+   + +DL+    A   
Sbjct: 1925 QLKISCRSAFAPMDEKRCLISADFCQLEMRILAHLSQDKALLQVMNSTQDLFTAIAAHWN 1984

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             +  + V++  R   K +   + Y  G ++  +      L        + T      +  
Sbjct: 1985 KIDESNVSEQLRNGTKQICYGIVYGMGMRSLSE-----ALKCTEQEAQMITEQFHLAYPG 2039

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
             + +   + +    +   +   G    R        +S   +L  +  +    +   G A
Sbjct: 2040 IKAYTMKVVKFARNNGYVETITGR--RRYLD---HINSGEVQLKTQAERQAINSTIQGSA 2094

Query: 538  IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                K               L +    GR                               
Sbjct: 2095 ADIAK------------SAILRMEKNLGRYREK--------------------------- 2115

Query: 598  TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPS 656
                             +   K   ++VL +HDE++ E P       + +  L M +   
Sbjct: 2116 -----------------LGLAKNAVNLVLHLHDELIFEVPTDKAKKVAKVLSLTMENCVK 2158

Query: 657  WAKGLPLKAEGYESKRYR 674
                +PL+ +    + + 
Sbjct: 2159 --LNVPLRVKLKIGRSWG 2174


>gi|195069821|ref|XP_001997038.1| GH25245 [Drosophila grimshawi]
 gi|193905759|gb|EDW04626.1| GH25245 [Drosophila grimshawi]
          Length = 2235

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/497 (14%), Positives = 148/497 (29%), Gaps = 98/497 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +      +   G+        TL Q +     KL+ ++  L      +    + +
Sbjct: 1828 ELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELHGSR-FNLGSTQAV 1886

Query: 240  KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
               L L       +   +T +++L      +P +  + N R + S      +  L++   
Sbjct: 1887 AKVLGLHRKA---NGRISTSRQILEKL--DSPMSQLILNYR-KLSMLLSKNMQPLLKCCQ 1940

Query: 300  SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            ++   R   Q +  + TGR S      QN+        E+      +  S          
Sbjct: 1941 AN---RVHGQSITYTATGRISMSEPNLQNV----AKDFEIQLGAEKINISC--------- 1984

Query: 360  ISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                 RS     +GK+ L+ AD   +E R+LA ++ +Q  LK   + +DL+    A    
Sbjct: 1985 -----RSAFAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWNK 2039

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            +  ++V++  R   K +   + Y  G ++  +      L        + +      +   
Sbjct: 2040 IPESEVSEQLRNGTKQICYGIVYGMGMRSLAE-----SLKCTEQEAQMISEQFHLAYAGI 2094

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
            + +   + +    +   +   G    R          ++     +  +    +   G A 
Sbjct: 2095 KAYAMKVVKFARNNGYVETITGR--RRYLDHINSGEPQIKN---QAERQAINSTIQGSAA 2149

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
               K               L +    GR      +  N                      
Sbjct: 2150 DIAK------------SAILRMEKNIGRYREKLGLAEN--------------------AV 2177

Query: 599  ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSW 657
                                     +VL +HDE++ E P       + +  L M +    
Sbjct: 2178 N------------------------LVLHLHDELIFEVPVDKAKKVAKVLSLTMENCVK- 2212

Query: 658  AKGLPLKAEGYESKRYR 674
               +PL+ +    + + 
Sbjct: 2213 -LSVPLRVKLKIGRSWG 2228


>gi|195053948|ref|XP_001993888.1| GH22128 [Drosophila grimshawi]
 gi|193895758|gb|EDV94624.1| GH22128 [Drosophila grimshawi]
          Length = 2218

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/497 (14%), Positives = 148/497 (29%), Gaps = 98/497 (19%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +      +   G+        TL Q +     KL+ ++  L      +    + +
Sbjct: 1811 ELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELHGSR-FNLGSTQAV 1869

Query: 240  KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
               L L       +   +T +++L      +P +  + N R + S      +  L++   
Sbjct: 1870 AKVLGLHRKA---NGRISTSRQILEKL--DSPMSQLILNYR-KLSMLLSKNMQPLLKCCQ 1923

Query: 300  SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            ++   R   Q +  + TGR S      QN+        E+      +  S          
Sbjct: 1924 AN---RVHGQSITYTATGRISMSEPNLQNV----AKDFEIQLGAEKINISC--------- 1967

Query: 360  ISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                 RS     +GK+ L+ AD   +E R+LA ++ +Q  LK   + +DL+    A    
Sbjct: 1968 -----RSAFAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWNK 2022

Query: 419  VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            +  ++V++  R   K +   + Y  G ++  +      L        + +      +   
Sbjct: 2023 IPESEVSEQLRNGTKQICYGIVYGMGMRSLAE-----SLKCTEQEAQMISEQFHLAYAGI 2077

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
            + +   + +    +   +   G    R          ++     +  +    +   G A 
Sbjct: 2078 KAYAMKVVKFARNNGYVETITGR--RRYLDHINSGEPQIKN---QAERQAINSTIQGSAA 2132

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
               K               L +    GR      +  N                      
Sbjct: 2133 DIAK------------SAILRMEKNIGRYREKLGLAEN--------------------AV 2160

Query: 599  ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSW 657
                                     +VL +HDE++ E P       + +  L M +    
Sbjct: 2161 N------------------------LVLHLHDELIFEVPVDKAKKVAKVLSLTMENCVK- 2195

Query: 658  AKGLPLKAEGYESKRYR 674
               +PL+ +    + + 
Sbjct: 2196 -LSVPLRVKLKIGRSWG 2211


>gi|195329438|ref|XP_002031418.1| GM25985 [Drosophila sechellia]
 gi|194120361|gb|EDW42404.1| GM25985 [Drosophila sechellia]
          Length = 2006

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 97/672 (14%), Positives = 187/672 (27%), Gaps = 134/672 (19%)

Query: 30   VILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVAHNSYFERTV 79
            +   +F   D+    W+   D              Q L   +   D+T+V H+   +  +
Sbjct: 1435 ISCVSFCLADNVAFYWNMQIDDRAACQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKM 1494

Query: 80   LKACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
            L+        I  +     V                 L +      E   L      G  
Sbjct: 1495 LRKAIPQLQKISVKLEDAKVANWLLQP----DKTVNFLNMCQTFAPECTGLANLCGSGRG 1550

Query: 139  HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------------SKEQEL 185
            +               R   E C     VT  I K                     E  +
Sbjct: 1551 YSSYGLDTSSAILPRIRTAIESC-----VTLHILKGQIENLGRIGEGDLLKFFHDIEMPI 1605

Query: 186  WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
                  +   G+         L Q +     KL+ ++         +    + +   L  
Sbjct: 1606 QLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQHGSR-FNLGSSQAVAKVL-- 1662

Query: 246  ETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
              GLH +     TT ++VL      +P +  +   R + S      +  L+E   +D   
Sbjct: 1663 --GLHRKAKGRVTTSRQVLEKL--NSPISHLILGYR-KLSCLLAKSIQPLMECCQAD--- 1714

Query: 305  RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
            R   Q +  + TGR S      QN+ +                            ++   
Sbjct: 1715 RIHGQSITYTATGRISMTEPNLQNVAK------------------EFCIQVGADAVNISC 1756

Query: 365  RSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            RS  +   E + L+ AD   +E R+LA M+ ++  L+   + +DL++   A    +  ++
Sbjct: 1757 RSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIKESE 1816

Query: 424  VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
            VT D R   K +   + Y  G ++  +      LN +     + ++   E ++   ++ R
Sbjct: 1817 VTPDLRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEQEARILSDQFHEAYKGIRDYTR 1871

Query: 484  WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
             +          +   G          R+    ++     L +A  Q + +         
Sbjct: 1872 RVVNFARGKGFVETITGR---------RRYLEMINSDMEHLKKAERQAVNS--------- 1913

Query: 544  RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                          L +     R                                     
Sbjct: 1914 TIQGSAADIAKNAILKMEKNIERYRE---------------------------------- 1939

Query: 604  AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLP 662
                               D+V+ +HDE++ E P       + +  + M S       +P
Sbjct: 1940 -------KLA---LGDKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITMESCVK--LSVP 1987

Query: 663  LKAEGYESKRYR 674
            LK +    + + 
Sbjct: 1988 LKVKLRIGRSWG 1999


>gi|156122486|gb|ABU50234.1| DNA polymerase [Cyanophage S-CBP3]
          Length = 582

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 88/688 (12%), Positives = 178/688 (25%), Gaps = 186/688 (27%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVELW-DCVHDPVMPQVLKEA 60
           TL  D ET    +   C          +        +     ++ D      + + + + 
Sbjct: 2   TLIFDIETDGLYNDVTC----------IHCIGIHDLNTKETYVFNDVGTQQPITKGI-QL 50

Query: 61  LENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA-LKL 118
           LE+ D+  V HN   ++  V++  +     + R + TLVL+R       LK   +   K 
Sbjct: 51  LEDADII-VGHNIIGYDLPVIRKLYPWFSNVGRVLDTLVLSRLYHADL-LKTDQKRNWKH 108

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              ++     L A   +   ++  + +         +   +Y   DV +TR+++K    +
Sbjct: 109 MPVQLWGRHSLEAYGYRLGEYKGCFGKTTDWKD-WSQEMEDYMVQDVNITRKLWKDFPEI 167

Query: 179 SSK---EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES----------- 224
                 E  +  +       G+  D   A  L   +  E   L   L +           
Sbjct: 168 PEWVQLEHRVAQILTEQEIHGWYFDEPAAWELESTLRRELESLKAVLRNRHPFILGEEFT 227

Query: 225 ---------------LTYGLVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSN 266
                           T     +    + +   L            +  +     ++   
Sbjct: 228 PKRPNSTQGYFTGATFTRLKEMNPTSRDHIAYILQKFYDWEPTERTEKGKPVVDEIV--L 285

Query: 267 KKLTPQAIQVFNNRMRASR---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
           K +  +    F   +  ++        +N  ++ + +D R+        A+ T R +   
Sbjct: 286 KDIGSEIALQFFRCLELTKQIGMLTEGVNAWLKLVRND-RIHHHCS--VATNTHRCAHRK 342

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
                +P                                  R    A+ G  +V ADLAG
Sbjct: 343 PNLAQVP-----------------------------AEAEFRKLFRATPGMVMVGADLAG 373

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R+LA          A   G            +   A      R + K +  A  Y  
Sbjct: 374 IELRMLAHYL-------AQWDGGRYGDVLLNGDIHQENADKIGISRRLVKTVTYAFLYGA 426

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
           G +       +   +L+                                           
Sbjct: 427 GNQKI---GLSYDQSLSPDKAK-----------------------------------KKG 448

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           + +++A+      + +L     +A                            N   +   
Sbjct: 449 QEIRQAYMDAIPGLRKLVEATKKAA---------------------------NRGYIRAI 481

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
            GR +                           K    ++Q+ +  I    +    +A   
Sbjct: 482 DGRHISVDSPH---------------------KSLNYLLQSSAGVIAKRWLALTHEAIIR 520

Query: 621 ---GYDIVLTVHDEIVCETPDTDEFNAS 645
                  +  +HDE+  ET      +  
Sbjct: 521 ADIKAHQLAFIHDELQFETTPEHVEDLK 548


>gi|28199079|ref|NP_779393.1| truncated phage-related DNA polymerase [Xylella fastidiosa
           Temecula1]
 gi|28057177|gb|AAO29042.1| truncated phage-related DNA polymerase [Xylella fastidiosa
           Temecula1]
          Length = 290

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 92/276 (33%), Positives = 123/276 (44%), Gaps = 21/276 (7%)

Query: 416 SFNVAPAQVTKDQRAIGKVMELA--------LGYQGGAKAFQKMASTTGLNLNTF--AHL 465
                       +        L           Y+ G    +    +TGL L +      
Sbjct: 19  DHPSDRGWRHGHRTQYAGWPRLGHETSQGAVSPYRSGDDRRRYARRSTGLTLPSAVIDTP 78

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
               ++P   ++A    +W + NH            AC+  K+AWR  H  ++  W  L 
Sbjct: 79  NACAASPMPIQEAVEALQWTKANHRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQ 138

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLN 581
            A    I + +            + ++  +  L L LPSGR L Y     D     SY+ 
Sbjct: 139 CAVTDAIGHPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMG 193

Query: 582 TT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
           T   TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D 
Sbjct: 194 THPVTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDN 253

Query: 640 DEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 254 AAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 289


>gi|297180888|gb|ADI17092.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [uncultured gamma proteobacterium HF0070_03O15]
          Length = 454

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 83/532 (15%), Positives = 157/532 (29%), Gaps = 144/532 (27%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV--DVERTKLDQELES 224
              ++++   P + +E +   +D    D    +       L+  +    +  + +    +
Sbjct: 38  AMAQMWRVGLPWNREELDQCRID--YEDDIKELGNEFIRELDNDLPSGKKLPRNEDGSFN 95

Query: 225 LTYGLV------------SSSRCLEKLKTWLFLETGLHLED--LTETTCQRVLSSNKKLT 270
           L                  + +  ++L   L L  G    +     +  +  L +    +
Sbjct: 96  LRAKDQGSKRLGTKKYAGFNIKSSKQLLEKLELVLGYTPVNNDGKPSVAKDALKNCAADS 155

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
           P    +   + R  R     + ++ + M++DG +R +   LGA  TGR S      Q +P
Sbjct: 156 PTIQTLMTWKRREKRRQ--MIESIQDKMSNDGFVRASYMQLGA-DTGRMSSIKPNNQQIP 212

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R S                               R CV A +G K+V AD + +E R+ A
Sbjct: 213 RDSE-----------------------------FRQCVQAPQGWKIVDADFSQMELRLAA 243

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +A ++    AF+ GEDL+  T  +             R I K     L Y  GA+  +K
Sbjct: 244 ALAKDKNMTAAFQRGEDLHDYTAEQM---------GCDRQIAKSANFGLLYGAGAEGLRK 294

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            A ++G+                                       +       +++  W
Sbjct: 295 YAGSSGV---------------------------------------IMTNDEAVKIRDNW 315

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              +S + +   E++     T                              +P      +
Sbjct: 316 LTTYSGIRDWQREMNYLSRSTE---------------------GDEWPETRVPVSNMRRF 354

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYD 623
                NR+ +                     +Q     IL   + N              
Sbjct: 355 LKGDLNRTTVR----------------CNTPIQGAGAAILKCALGNLWDKVKETGEDKVR 398

Query: 624 IVLTVHDEIVCETPDT-DEFNASMLYHLMTSN-PSWAKGLPLKAEGYESKRY 673
           I   VHDE++    +   +  A +L   M +    W   +P  AE     R+
Sbjct: 399 IAAAVHDELILLVKEDLADDWAEILKTTMENAEAKWLDDVPALAEVSIGDRW 450


>gi|291280806|ref|YP_003497640.1| hypothetical protein DEFDS_P264 [Deferribacter desulfuricans SSM1]
 gi|290755508|dbj|BAI81884.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1576

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/685 (11%), Positives = 166/685 (24%), Gaps = 142/685 (20%)

Query: 110  KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
              + E +   SQ +   K+L         +  +           +     Y  GD   T 
Sbjct: 829  DTLNEKVGYKSQMVHLFKDLFDLVS--TKNNIVKIDEFDYSYINFDEQSFYAAGDTYATY 886

Query: 170  E---------IFKRLEPLSSKEQELWYLDQTINDR-------GYCVDVALAHTLNQIVDV 213
            E         + +  + +  +      L   I          G  ++      +      
Sbjct: 887  EAFKLDYMNFLKRDSKSILKEYPIPLVLLNDILLPISVIQSQGIKIEPDDYEFMKINFKR 946

Query: 214  ERTKLDQELESLTY------------GLVSSSRCLEKLKTWLFLETGLHLE--------- 252
               +L + + +                   + +  E L    +    +  +         
Sbjct: 947  SLEELLKNIYNHPDLKPYIEEFEAKYKEKFNIQSAEHLTHMFYDYLQVPDKYKTFTDKGN 1006

Query: 253  --------DLTETTCQRVLSSNKKLTPQAIQVFNN----RMRASRSAVLKLNTL-VEAMN 299
                       +       S   K   +  +            S+     + +     + 
Sbjct: 1007 IQMNESAIKKIKGIDIEDESIQDKKKVEIAKYLAEKTLEYRTFSKLYSAYIQSYNKNDLI 1066

Query: 300  SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
                +     F   + TGR S      QN+P+     E   + I       ++       
Sbjct: 1067 DTNYIVHPNYFTTGTVTGRMSSSEPNFQNIPKGDLPKEFQVKNIFVSRYLNSNKYFEDND 1126

Query: 360  ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
                +           L+ AD + +E RVLA ++ ++    AF +GED+++ T      +
Sbjct: 1127 YKKPITG--------ILLQADYSQMELRVLAMVSQDENLKNAFISGEDIHLATAKSITGM 1178

Query: 420  AP--AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
                  V ++     +V  L   Y+       +  +    +    + +        +   
Sbjct: 1179 DYLSKDVDENTEITPEVKNLITKYKQYWGKEAENLT----DKEILSKIAHDTEVIRKKAK 1234

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
              NF           A          E+  + +      V           ++  +    
Sbjct: 1235 TVNFGIVYGMTAAGLAERINVSLKEAEKFIEQYLNALPGVQNYIITKQTKAKE--KGYVE 1292

Query: 538  IIARKRRD----------VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             I  ++R+          +  +             P    L Y ++      +     + 
Sbjct: 1293 TIWNRKRNLLNAKVYLHDIEQIIKHYKDKLYSKNTPEEDKLFYNNIIYGLKQMYYVGTKS 1352

Query: 588  TREYTYGGKLTENIVQAVSRDILAEGMMNATKAG--------------------YDIVL- 626
             R+           +Q  + D     ++    A                        VL 
Sbjct: 1353 LRQSINAP------IQGGASDFTFVSLICLNHAFLTLKELNIPVYNKETNQIEYIRPVLI 1406

Query: 627  -TVHDEIVCETPDTDE-----FNASMLYHLMTSNP------------SWAKG-------- 660
             TVHD IV + P   +         ++  +M                  A          
Sbjct: 1407 GTVHDSIVIDIPVHTKHYIVHKVIKLVKTIMEDPLNYFINIFLPDVYKVAPDVNLTELKK 1466

Query: 661  -----------LPLKAEGYESKRYR 674
                       +PLK++     R+ 
Sbjct: 1467 ELNSIRDLYLQVPLKSDVEVGYRWG 1491



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 54/199 (27%), Gaps = 47/199 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDH----PVELWDCVHDP------- 51
           + +D ET         G         + +F+    D         +    H         
Sbjct: 482 VALDIETNGL-----KGYSTDKHKNTITMFSITKVDPKTKQLKTYVIGYEHKDIMNQMDE 536

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLA 100
                    + +++   L + ++  + HN  F+ + +    N+   +I + R+  T+ + 
Sbjct: 537 KSFKLYKNNVRKLILNYLNSENIIKIFHNGTFDVSYIMNKLNISPNEIKVTRYFDTINIL 596

Query: 101 RS-----NGLPSALKAVG-------EALKLSSQ-------KMEEGKELIARFCKGETHEC 141
                        L  +                       K+ E   LI +F K +  E 
Sbjct: 597 YLRMEEKLKGWQKLDNLAMLRSKLRTYYFYMHDYVDTLKNKLSELNSLINKFRKYDLTES 656

Query: 142 LYDRNKPNHREAWRLFGEY 160
                   ++     +  Y
Sbjct: 657 QISCFLNINKTLINYYYIY 675


>gi|307580241|gb|ADN64210.1| truncated phage-related DNA polymerase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 205

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 84/208 (40%), Positives = 108/208 (51%), Gaps = 11/208 (5%)

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
             ++A    +W + NH            AC+  K+AWR  H  ++  W  L  A    I 
Sbjct: 2   PIQEAVEALQWTKANHRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIG 61

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQL 587
           + +            + ++  +  L L LPSGR L Y     D     SY+ T   TR+ 
Sbjct: 62  HPETA-----HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKW 116

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647
           TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L
Sbjct: 117 TRITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHL 176

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYRK 675
             LM + P WA+GLPL AEG+++ RYRK
Sbjct: 177 AALMATPPPWAQGLPLAAEGFQTHRYRK 204


>gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|2340084|gb|AAB67306.1| Mus308 [Drosophila melanogaster]
 gi|7299675|gb|AAF54858.1| mutagen-sensitive 308 [Drosophila melanogaster]
 gi|201065649|gb|ACH92234.1| FI03732p [Drosophila melanogaster]
          Length = 2059

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 97/676 (14%), Positives = 191/676 (28%), Gaps = 141/676 (20%)

Query: 30   VILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVAHNSYFERTV 79
            +   +F   D+    W+   D              Q L   +   D+T+V H+   +  +
Sbjct: 1487 ISGVSFCLADNVAYYWNMQIDERAAYQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKM 1546

Query: 80   LKACFNLDIPI-----HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
            L+      IP       +     V                 L +      E   L     
Sbjct: 1547 LRKA----IPQLKRISAKLEDAKVANWLLQP----DKTVNFLNMCQTFAPECTGLANLCG 1598

Query: 135  KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------------SK 181
             G  +               R   E C     VT  I +                     
Sbjct: 1599 SGRGYSSYGLDTSSAILPRIRTAIESC-----VTLHILQGQTENLSRIGNGDLLKFFHDI 1653

Query: 182  EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
            E  +      +   G+         L Q +     K++ ++         +    + +  
Sbjct: 1654 EMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSR-FNLGSSQAVAK 1712

Query: 242  WLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             L    GLH +     TT ++VL      +P +  +   R + S      +  L+E   +
Sbjct: 1713 VL----GLHRKAKGRVTTSRQVLEKL--NSPISHLILGYR-KLSGLLAKSIQPLMECCQA 1765

Query: 301  DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
            D   R   Q +  + TGR S      QN+ +                    S      ++
Sbjct: 1766 D---RIHGQSITYTATGRISMTEPNLQNVAK------------------EFSIQVGSDVV 1804

Query: 361  SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
                RS  +   E + L+ AD   +E R+LA M+ ++  L+  ++ +DL++   A    +
Sbjct: 1805 HISCRSPFMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKI 1864

Query: 420  APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              ++VT+D R   K +   + Y  G ++  +      LN +     + ++   + ++   
Sbjct: 1865 EESEVTQDLRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEQEARMISDQFHQAYKGIR 1919

Query: 480  NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
            ++   +          +   G      ++     +S V  L N+  +    +   G A  
Sbjct: 1920 DYTTRVVNFARSKGFVETITGR-----RRYLENINSDVEHLKNQAERQAVNSTIQGSAAD 1974

Query: 540  ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
              K                                          R              
Sbjct: 1975 IAK-------------------------------NAILKMEKNIERYRE----------- 1992

Query: 600  NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWA 658
                                   D+V+ +HDE++ E P       + +  L M +     
Sbjct: 1993 -----------KLA---LGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVK-- 2036

Query: 659  KGLPLKAEGYESKRYR 674
              +PLK +    + + 
Sbjct: 2037 LSVPLKVKLRIGRSWG 2052


>gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 201

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 80/237 (33%), Gaps = 36/237 (15%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            + L   ++ + +   T   L ++ TGR S      QN+P  +    +            
Sbjct: 1   TDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRK------------ 48

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        +R+  I++ G KL+ AD + IE RVLA +A      KAFE G D++ 
Sbjct: 49  -------------IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHA 95

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T +  F V    +  + R   K +   + Y   A           L++           
Sbjct: 96  MTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISA-----FGLANQLSIERSEAGDYIKK 150

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
             E +    ++    +    +    +   G       +    ++  V  L   L +A
Sbjct: 151 YFERFPGIRDYMESRKAMARDKGYVETIFGR------RINYSRNPLVQSLRARLQRA 201


>gi|60678001|gb|AAX33507.1| LP14642p [Drosophila melanogaster]
          Length = 2059

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 97/676 (14%), Positives = 191/676 (28%), Gaps = 141/676 (20%)

Query: 30   VILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVAHNSYFERTV 79
            +   +F   D+    W+   D              Q L   +   D+T+V H+   +  +
Sbjct: 1487 ISGVSFCLADNVAYYWNMQIDERAAYQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKM 1546

Query: 80   LKACFNLDIPI-----HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
            L+      IP       +     V                 L +      E   L     
Sbjct: 1547 LRKA----IPQLKRISAKLEDAKVANWLLQP----DKTVNFLNMCQTFAPECTGLANLCG 1598

Query: 135  KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------------SK 181
             G  +               R   E C     VT  I +                     
Sbjct: 1599 SGRGYSSYGLDTSSAILPRIRTAIESC-----VTLHILQGQTENLSRIGNGDLLKFFHDI 1653

Query: 182  EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
            E  +      +   G+         L Q +     K++ ++         +    + +  
Sbjct: 1654 EMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSR-FNLGSSQAVAK 1712

Query: 242  WLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
             L    GLH +     TT ++VL      +P +  +   R + S      +  L+E   +
Sbjct: 1713 VL----GLHRKAKGRVTTSRQVLEKL--NSPISHLILGYR-KLSGLLAKSIQPLMECCQA 1765

Query: 301  DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
            D   R   Q +  + TGR S      QN+ +                    S      ++
Sbjct: 1766 D---RIHGQSITYTATGRISMTEPNLQNVAK------------------EFSIQVGSDVV 1804

Query: 361  SDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
                RS  +   E + L+ AD   +E R+LA M+ ++  L+  ++ +DL++   A    +
Sbjct: 1805 HISCRSPFMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKI 1864

Query: 420  APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
              ++VT+D R   K +   + Y  G ++  +      LN +     + ++   + ++   
Sbjct: 1865 EESEVTQDLRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEQEARMISDQFHQAYKGIR 1919

Query: 480  NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
            ++   +          +   G      ++     +S V  L N+  +    +   G A  
Sbjct: 1920 DYTTRVVNFAHSKGFVETITGR-----RRYLENINSDVEHLKNQAERQAVNSTIQGSAAD 1974

Query: 540  ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
              K                                          R              
Sbjct: 1975 IAK-------------------------------NAILKMEKNIERYRE----------- 1992

Query: 600  NIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWA 658
                                   D+V+ +HDE++ E P       + +  L M +     
Sbjct: 1993 -----------KLA---LGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVK-- 2036

Query: 659  KGLPLKAEGYESKRYR 674
              +PLK +    + + 
Sbjct: 2037 LSVPLKVKLRIGRSWG 2052


>gi|328553017|gb|AEB23509.1| DNA polymerase I [Bacillus amyloliquefaciens TA208]
          Length = 763

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 93/785 (11%), Positives = 186/785 (23%), Gaps = 186/785 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELWDCVHDPVMPQ 55
               +D ET         G+    +   + +F +        D+    ++       +  
Sbjct: 36  KLCVLDSETT--------GLHIIKDKPFMWVFGWMLPKEKRTDEIKGRVFAFDSKAEILL 87

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI----HRWICTL---------VLARS 102
            +  AL    V  V HN  ++  +L     +   +         T+         V AR 
Sbjct: 88  QVI-ALTKKCVMTVGHNVKYDLHMLIN-GGISEKVVYGLKNITDTMGLCRFSFDAVSARD 145

Query: 103 NGLPSALKAVGEAL-----------------KLSSQKMEEGKEL---------------- 129
            G    LK V E                   K++  K    KEL                
Sbjct: 146 GGDVLGLKKVSEKYIDPKAGEFEKEVKKELRKINDAKRNILKELLKPYKGWGLGKIKEAY 205

Query: 130 -------IARFCKGET----HECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-------- 170
                  +  F K +            N          F +Y + D  +  E        
Sbjct: 206 KVKKRNEMDYFTKEKKQRWLKVPEEIENVYFKWMEENPFADYSEVDRDIMMEYVHSDGIY 265

Query: 171 ------------IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
                       + ++ + +  +E +L      +   G  VD+   H+  +  + E  KL
Sbjct: 266 TLELVEFTYSTVLKRKQKAILEQENKLIIELLKMERVGMKVDMPYLHSCFKKCEDEIQKL 325

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFN 278
            +EL  +      +      +  +   + G   E   ++  ++          +  Q+  
Sbjct: 326 YEELWGIVG-EYFTVSQGTVIADYFEKKLGERPETTDKSFLKK------HKDDRVSQLIT 378

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
              R  +     ++ ++E    D                  S      Q  P        
Sbjct: 379 RLRRLEKWQSTYISRIIEVAQYDNHFYTQYGQFNTVSGRLGS----DAQQFP----KERI 430

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK--KLVVADLAGIEARVLAWMA--- 393
           L +              P++      R   I   G   K+   DL+ IE R  A      
Sbjct: 431 LTEEGELYEKENGEGKAPIEYEIFSPRRAFIVEGGNYNKIAYFDLSQIELRAQANYTVLL 490

Query: 394 --GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG-------- 443
              +    +A+   +  +  T          +  +          + L   G        
Sbjct: 491 KKPDLNLCRAYMPFKCTHYITGEEFRYDTKEERARWYEKKEDGTSVWLLENGESWTPTDV 550

Query: 444 ----GAKAFQKMA-------STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
                      +A               +                  NF R       + 
Sbjct: 551 HSETSHNTLMALAFKCVDKYKQYEHEKESPVDEKSFKKFWRYIGKMFNFMRNYGGGAKKA 610

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
           +            +   W      VS    ++     +  +N  A     R        K
Sbjct: 611 SEALEVSMEIANALVSGWSNTFPEVSYYQKQV---AAKVQKNSYATNMYGRVYFLSNTDK 667

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                                                      K+   +VQ    D+L  
Sbjct: 668 -----------------------------------------AYKVGNYLVQGSCADMLKG 686

Query: 613 GMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
            ++               +  +HDE+       +E+    +  +M     W + +P+  +
Sbjct: 687 YVIRIGEFLRENNCKTLPLANIHDELQFLVHKGEEWIFPHIKRIMED-VEWMQ-VPVVVD 744

Query: 667 GYESK 671
              ++
Sbjct: 745 LEITE 749


>gi|298241730|ref|ZP_06965537.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
 gi|297554784|gb|EFH88648.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
          Length = 531

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/557 (14%), Positives = 152/557 (27%), Gaps = 157/557 (28%)

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------ELWYLDQT 191
            L+ R              Y   D+ +   I +   P   +++         E       
Sbjct: 22  GLHTRPTEWAAPFPAEQLVYMVQDIEIPYAIAQHQRPRIKEQKLARVVHLENEAVPALAA 81

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS------------------ 233
           +  RG C+DV    ++       +  L+  L       +  +                  
Sbjct: 82  MEMRGVCIDVERWRSILARKQARQQALEPGLRETLGTALQRACDDYQVALTREEKRLVEA 141

Query: 234 --RCLEKLKTWLFLETGL------------HLEDLT--------------------ETTC 259
                 +    LF   GL              E  T                      T 
Sbjct: 142 YRANPAQSSWGLFRRKGLAQWQATHKKPPQPKERGTINLASPPQLLAALRALGVPVSATD 201

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
           +  L    K       +        + A      L+  +++DGRLR     +GA+  GR 
Sbjct: 202 EETLEPYAKEHAAVASLLQ-WKELHKFASSFGENLLAMVDTDGRLRTDYAQIGAAS-GRI 259

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
                  Q +P                        +  +   + VR C +A  G +++ A
Sbjct: 260 ICSKPNLQQIP----------------------AEEEEEGQEEPVRHCFVAPPGYRILKA 297

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
           DL+ IE R+LA ++ +Q  L+ F  G+DL+  T    F+++P   TK     G       
Sbjct: 298 DLSNIELRILAEVSRDQTMLRLFAEGKDLHAETAKLMFHLSPETDTKRHLYKG------- 350

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
                           G+  N  A+                                   
Sbjct: 351 VPGRKIAKTINFGLAYGMGANGLANRA------------------------------GVD 380

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               + + + + + +  ++     L    +Q +E G A+                     
Sbjct: 381 LPTAKSLIRTYFETYRGIARW---LPLTAKQALEQGYAVTLA------------------ 419

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
                GR   +  +  +  +         R          + ++  + DIL   +     
Sbjct: 420 -----GRRRTFASIPTSVDWNREVRASAERSA------KNHPIRGTNADILKRALALLHA 468

Query: 620 A---GYDIVLTVHDEIV 633
           +   G  ++L VHDEIV
Sbjct: 469 SLPSGAHLILAVHDEIV 485


>gi|331013568|gb|EGH93624.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 443

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 81/261 (31%), Gaps = 39/261 (14%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 81  AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 140

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 141 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 190

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G+Y   +  +T  + +  E           
Sbjct: 191 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 250

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 251 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 309

Query: 237 EKLKTWLFLETGLHLEDLTET 257
           ++L   L+ + G+ +   T T
Sbjct: 310 KQLGVILYEKLGMPILSKTAT 330


>gi|70935833|ref|XP_738948.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56515564|emb|CAH87194.1| hypothetical protein PC302363.00.0 [Plasmodium chabaudi chabaudi]
          Length = 287

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 106/400 (26%), Gaps = 122/400 (30%)

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +        L   +N       T      + +GR+S      Q +PR           
Sbjct: 1   MYKLYSAFYLKLPLHINKQTNKIHTTFNQLKTFSGRFSSEKPNLQQIPR----------- 49

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                +R   I SE    ++AD   IE ++ A +  ++  LKA+
Sbjct: 50  ------------------QQNIREIFIPSENNIFIIADFKQIELKIAAEITNDEIMLKAY 91

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
               DL+  T +        ++ K+ R + K +   L Y       +  A+T        
Sbjct: 92  NNNIDLHTLTASIITKKGIDEINKEDRHVAKAINFGLLYGMNYVNLRTYANTY------- 144

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
                                                   C     ++ + +  +S    
Sbjct: 145 -------------------------------YNVKMNLDQCLYFYNSFFEHYKGLSRWH- 172

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNT 582
               + +QT     + ++ ++   P                                   
Sbjct: 173 ---NSVKQTRALEYSTLSNRKVVFPYFSFT------------------------------ 199

Query: 583 TTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPD 638
                        K     VQ    DIL   ++   K        I+L VHDEI+ E   
Sbjct: 200 -------------KALNYPVQGTCADILKLALVELYKNLRHINGKIILCVHDEIIIEVDK 246

Query: 639 T-DEFNASMLYHLMTSNPSWAKGLPLKAEGY--ESKRYRK 675
              E    +L   M S+ S+     +K E     ++ + K
Sbjct: 247 KHQEEALKILVESMESSASFFLK-KVKCEVSAKIAQNWGK 285


>gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 377

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 103/261 (39%), Positives = 141/261 (54%), Gaps = 5/261 (1%)

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQI 210
            W  F +Y + DV   R++ KRL   +    EL  W+LDQTINDRG  VD  LA      
Sbjct: 2   DWAQFVDYARRDVAAMRDVVKRLPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGA 61

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
           V+  +  L +    LT G+V ++   + L   L    G+ L D+ + T +R L  +  L 
Sbjct: 62  VERAKQALAERTSDLTAGVVQAATQRDALLHHLSTAHGVALPDMQQHTVERCL-DDPLLP 120

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
               ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLP
Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 331 RPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           RP+ S E +   I  +          D + + S  +RSC+IA   KKLVVADL+ IE RV
Sbjct: 181 RPTLSQEAITVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240

Query: 389 LAWMAGEQWKLKAFETGEDLY 409
           LAW+AGE  KL AF   +   
Sbjct: 241 LAWLAGETPKLHAFGEFDTCQ 261


>gi|291545365|emb|CBL18473.1| hypothetical protein CK1_00910 [Ruminococcus sp. SR1/5]
          Length = 124

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M TL ID ET S + L K G+ +Y E  D  ++LFA+  D+ PV++ D      +P+ + 
Sbjct: 1   MKTLSIDIETYSDVPLQKTGVYRYVESPDFEILLFAYSVDNQPVQVIDLACGEQIPKEIL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAV 112
            ALE+  V   A N+ FER  L           +    W C+++ + + GLP +L+ V
Sbjct: 61  LALEDECVIKWAFNATFERICLSRFLGYPTGEYLKPESWRCSMIWSATMGLPLSLEGV 118


>gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
 gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata]
          Length = 608

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 108/695 (15%), Positives = 189/695 (27%), Gaps = 160/695 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D ETR+  D    G   +  D  + L   G     V       DP     +   L 
Sbjct: 39  ILGLDVETRALPD---TGPRHFGPDAGLRLVQLGTA--TVAWVLDPLDPAQRAAIAAVLG 93

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL----PSALKAVGEALKL 118
           +     V H + F+   + +   + +   R   T ++++           LK +      
Sbjct: 94  DPGRRFVTH-TSFDTLAVWSALAIGL-GQRVADTHLISKLVDPDERAGHGLKTLTARHLD 151

Query: 119 SSQKM--EEGKELIARFCKGETHECLYDRNKPNH--REAWRLFGEYCKGDVTVTREIFKR 174
               +        +              +             +  Y +  + V  ++   
Sbjct: 152 DGLTLAQTALYARMRALAPPGERAGERWKTWGWAHLPADDEAYVVYVRRLLPVLLDLCGP 211

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              L   EQ L      I  RG  +D+         V+ +       +E+      +S R
Sbjct: 212 FSHLVPVEQWLAAQSVGITIRGLALDLPYTRAYLAQVEADHHAAAALIEAELGCPPTSPR 271

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL--------TPQAIQVFNNRMRASRS 286
             + L T      G              L++  +         + Q  ++   R R + +
Sbjct: 272 FADWLDTQHVP--GPRTATGRLQVTADTLTALARDLDTGRLTVSDQVRRMLTARGRVAAT 329

Query: 287 AVL--KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +     L + + A +  GR+   +  L A +TGR S      Q L +             
Sbjct: 330 SNTIANLRSFLAAADPAGRVHPQINTLRA-KTGRMSITGPALQTLKKGDPR--------- 379

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                              +R C  A  G  L+  D + +E RV A ++ +        +
Sbjct: 380 -------------------LRHCFQADPGHVLISCDFSQVEVRVTAALSRDPALTDVLAS 420

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
           G D++  T    F       TKDQR + K       Y GGA+A                 
Sbjct: 421 GVDIHDATARLLFG---DGFTKDQRTLAKRATFGTIYGGGARALMN-------------- 463

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                                                    V   WR  +  V+      
Sbjct: 464 ------------------------------ATGATHQVATDVITRWRAAYPGVAAY---- 489

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
             +      N                             SGR +    +           
Sbjct: 490 --SARLADHNPVITG------------------------SGRRIPADPL----------- 512

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMN-ATKAGYD--IVLTVHDEIVCETPDTDE 641
               R Y          VQ+ +RD+L   +    T+ G    + L VHDE++   P    
Sbjct: 513 ----RPYANA----NYAVQSTARDLLVTAVHTLVTRHGLHDALWLFVHDEVIVHVPTDRA 564

Query: 642 FNA-SMLYHLMTSNPSWAKGLPLKAEGYE-SKRYR 674
               + L   MT++    +G+ + AE       + 
Sbjct: 565 AQVAADLQAAMTTSF---RGVAITAEADILGTHWG 596


>gi|148872874|gb|ABR15064.1| DNA polymerase I [Campylobacter jejuni]
 gi|148872876|gb|ABR15065.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 87/256 (33%), Gaps = 38/256 (14%)

Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM--NSDGRLRGT 307
                  +T ++VL++     P   ++ + R   ++        L++    + + R+  +
Sbjct: 2   KKGKTGYSTDEKVLNALLDKHPVIAKILDYR-ELAKLYSTYCEPLLKLALKDKNSRIYSS 60

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
               G + TGR S      QN+P   +  ++                          +SC
Sbjct: 61  FLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY-------------------------KSC 94

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     +   +
Sbjct: 95  FVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYE 150

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R++ K +   L Y  G K   +      L +             E +   + +   ++ 
Sbjct: 151 TRSVAKSINFGLIYGMGYKTLSQ-----NLKIEAHLAKSYIEKYFENFTSIKKYFETVKN 205

Query: 488 NHPEHAIEDLFIGTAC 503
              ++       G   
Sbjct: 206 KAKQNGFITTLSGRKR 221


>gi|29366786|ref|NP_813726.1| gp11 [Streptomyces phage phiBT1]
 gi|29243106|emb|CAD80134.1| gp11 [Streptomyces phage phiBT1]
          Length = 624

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 107/713 (15%), Positives = 176/713 (24%), Gaps = 177/713 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D ET         G+  YA    +    FG   H   +        +    KEA  
Sbjct: 36  ELALDTETT--------GLDIYAPGYGLRTVQFGT-THEAWVI----HYELRGRFKEA-- 80

Query: 63  NTDVTIVA-----HNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPS-------- 107
              V         HN+ F+  VL A  ++ +     R I T + A               
Sbjct: 81  ADYVLKHCPRFLIHNAMFDWLVLDAHADVSLESLAPRTIDTKIKATLIDPRQPQEGGIGT 140

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            LK +       S    +G         G T    +      H      +  Y   DV  
Sbjct: 141 GLKPLSAFYVDPSAPDTQGDLTAVFRSLGLTKATGFAGIDLRHP----TYNLYAGLDVIY 196

Query: 168 TREIFKRLE----------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           T  +   L+           L+  E E+ Y+   +   G  +D+    TL +++  E  K
Sbjct: 197 TARLNPCLDVEHERLGVRAALTDYEHEIAYMCAYMQRAGLVLDLEYVDTLRRMLREEEDK 256

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLF---LETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
                       V S     ++   L           +       ++VL     L     
Sbjct: 257 YATIA---ASWGVESVNSGAQVSEALLAMGETLTETTDGGALKVSKKVLLPLADLDRDWE 313

Query: 275 QV-----------FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
           ++                RA +      +   E  +  GR+  T+  L A          
Sbjct: 314 RIGAREPNPLAEAVLRAKRAGKWVSSYADKFAENHDPLGRIHPTINTLQARTGRMSISGD 373

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLA 382
           F  Q LP                                 +R  V+       +   D  
Sbjct: 374 FAAQTLPS----------------------------SDWMIRRAVLGDKPDHIVGSVDFQ 405

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RVLA +AG +   + F   +              P                     
Sbjct: 406 AIEMRVLAALAGVRRMTEGFLDPDPDPSVY--------PDGFDIHMYTA----------- 446

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                                          +      F +         + +       
Sbjct: 447 ------------------RLIKGPNATKRDRKVFKGAGFGKVYGGGIKTISRQTGAPEHE 488

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             R    + +    +    ++  +                                + + 
Sbjct: 489 IARAVAEYDRVFPEIKRASSKWQREAR-------------------------ARGCVTVT 523

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
           P+GR L                    R   Y   +     Q+ +RD+L + M+N   AG 
Sbjct: 524 PTGRILPLD-----------------RNRMYA--VVNYKCQSTARDVLGQAMINMRDAGL 564

Query: 623 --DIVLTVHDEIVCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
              + L +HDEIV   P    +  A      M        G+P+ AE     R
Sbjct: 565 LEYMKLPIHDEIVFSAPKSDAQDIAREFERCM--TMDL-FGVPVVAEADLGGR 614


>gi|330872927|gb|EGH07076.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 601

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 81/261 (31%), Gaps = 39/261 (14%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH----------DPVMPQVLKEALENTDVTIVAHNSY 74
           A+   ++  +F    H        H             + + LK  LE+ D T V  ++ 
Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406

Query: 75  FERTVLKACF-------NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F   +L  C         +D+   R   T++ +      +         +     +   K
Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVR-FDTILESYVLDSTAT--------RHDRDSLVA-K 456

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-------- 179
            L       +       +     + A    G+Y   +  +T  + +  E           
Sbjct: 457 YLTHTPINFQEIAGKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQP 516

Query: 180 ---SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    
Sbjct: 517 VLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSP 575

Query: 237 EKLKTWLFLETGLHLEDLTET 257
           ++L   L+ + G+ +   T T
Sbjct: 576 KQLGVILYEKLGMPILSKTAT 596


>gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c]
 gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 312

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 103/261 (39%), Positives = 140/261 (53%), Gaps = 5/261 (1%)

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL--WYLDQTINDRGYCVDVALAHTLNQI 210
            W  F EY + DV   R++ KRL   +    EL  W+LDQTINDRG  +D  L       
Sbjct: 2   DWAQFVEYARRDVAAMRDVVKRLPSHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIGA 61

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
           V+  +  L Q  E+LT G V ++   + L   L    G+ L D+ + T  R +  +  L 
Sbjct: 62  VERAKQTLAQRTEALTGGAVQAATQRDALLQHLNTAHGVALPDMQQHTVARCV-DDPALP 120

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
               ++ + R +AS ++  K   L+   + DGRLRGTLQF GASRTGRW+G +F P NLP
Sbjct: 121 ETVRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180

Query: 331 RPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           RP+ S E +   I  +          D + + S  +RSC+IA   KKLVVADL+ IE RV
Sbjct: 181 RPTLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSIIEGRV 240

Query: 389 LAWMAGEQWKLKAFETGEDLY 409
           LAW+AGE  KL AF   +   
Sbjct: 241 LAWLAGETPKLHAFREFDTCQ 261


>gi|40807290|ref|NP_047956.2| gp11 [Streptomyces phage phiC31]
 gi|579076|emb|CAA53907.1| unnamed protein product [Streptomyces phage phiC31]
 gi|40313247|emb|CAA07135.2| gp11 [Streptomyces phage phiC31]
          Length = 617

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 102/713 (14%), Positives = 175/713 (24%), Gaps = 184/713 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D ET         G+  Y+    +    FG   H   +          +       
Sbjct: 36  ELALDTETT--------GLAMYSSGYKLRTVQFGT-AHEAWVIHYELGGRFAE------A 80

Query: 63  NTDVTIVA-----HNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPS-------- 107
              V         HN+ F+  VL A   + +     R + T + A               
Sbjct: 81  ADYVLKHCPRFLIHNAPFDWLVLDAHTPVSMESLAPRTVDTKIKATLIDPRQPQDGGIGT 140

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            LK +       S    +G         G T E  +      H      +  Y   DV  
Sbjct: 141 GLKPLSAFYVDPSAPDTQGDLTAVFRSLGLTKETGWAGIDLRHP----TYNLYAGLDVIY 196

Query: 168 TREIFKRLEPL----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           T  +   L+               E E+ Y+   +   G  +D+    TL +++   R +
Sbjct: 197 TARLNPCLDAEHARLSIRPTLLEYEHEIAYMCAYMQRAGLALDLEYVDTLRRML---REE 253

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLF---LETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
            ++ L +     V S     ++   L           +       + VL     L     
Sbjct: 254 EEKHLYAAAMWGVDSVNSGAQVAEALLAMGETLTQRTDGGALKVDKAVLLPLADLDRDWE 313

Query: 275 QV-----------FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
           ++                RA +      +      +  GR+   +  L A          
Sbjct: 314 RIGAREPNPLAEAVLRAKRAGKWVTTYADRFANNHDPHGRIHPNINTLQARTGRMSINGD 373

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLA 382
           F  Q LP                                 +R  ++       +   D  
Sbjct: 374 FAAQTLPS----------------------------SDWMIRRAIVGDAPDHIMGSVDFQ 405

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            IE RVLA +A  +     F  G   +      +  +   + TK  R + K         
Sbjct: 406 AIEMRVLAALADVKRMKDGFVNGGSDFDIHMYTAQLIKGLEATKRDRKVFKGAGFG---- 461

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                                                   +         A +       
Sbjct: 462 ----------------------------------------KVYGGGVATIARQTGATEAE 481

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             R    + +    +    +   +    T     ++                        
Sbjct: 482 IARAVAEYDRVFPEIKRASSRWQREARGTGLVTVSVT----------------------- 518

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
             GR L                    R  TY   +     Q+ +RD+L + M+N   AG 
Sbjct: 519 --GRRLPLD-----------------RNRTYA--VVNYQCQSAARDVLGQAMLNMRDAGL 557

Query: 623 --DIVLTVHDEIVCETPD-TDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKR 672
              + L +HDEIV   P    +  A      M        G+P+ A+     R
Sbjct: 558 LDYMKLPIHDEIVFSAPKADAKDIAREFEKCM--TMDL-FGVPVVADADLGGR 607


>gi|195399626|ref|XP_002058420.1| GJ14321 [Drosophila virilis]
 gi|194141980|gb|EDW58388.1| GJ14321 [Drosophila virilis]
          Length = 2086

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 88/696 (12%), Positives = 200/696 (28%), Gaps = 163/696 (23%)

Query: 21   ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVA 70
            + +  +   +   AF   D+     +   +  +           ++L   L   ++T++ 
Sbjct: 1505 LYQVDDGAYLAGIAFCLSDNVAFYMNMQAEEELEQQPVSTEQKVELLCSLLSRPELTLLI 1564

Query: 71   HNSYFERTVLKACFN---------LDIPIHRW-------------------ICTLVLARS 102
            H+   +   L+              D  +  W                    CT + +  
Sbjct: 1565 HDGKDQLKALRQALPQLKGMQVKLEDPKVGNWLLQPDKTLSFQNMCQQFAPECTAL-SHL 1623

Query: 103  NGLPSALKAVGEALKLSSQKMEEGK--ELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
             G      +      L +     GK    I                     E     G  
Sbjct: 1624 CGSGRGYSS----YGLDASSAILGKVRASIEACLSVHILNGQL--------ENLERIG-- 1669

Query: 161  CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
                   T ++   L+     E  +      +   G+         L Q +     KL+ 
Sbjct: 1670 -------TGQL---LKFFRELEMPIQMSLCNMECLGFPAQEQRLQRLLQQMLATMKKLEV 1719

Query: 221  ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
            ++  L      +    + +   L L       +   +T +++L      +P +  + ++R
Sbjct: 1720 KIFELHGSR-FNLGSTQAVAKVLGLHRKA---NGRISTSRQILEKL--DSPISQLILDHR 1773

Query: 281  MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
             + S      +  L++   ++   R   Q +  + TGR S      QN+ +         
Sbjct: 1774 -KLSMVLAKNMQPLLKCCQAN---RVHGQSITYTATGRISMSEPNLQNVAK--------- 1820

Query: 341  QIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKL 399
                             + I+   RS  ++S E   L+ AD   +E R+LA ++ ++  L
Sbjct: 1821 ---------DFLVDLGQEKINISCRSAFVSSNEKHCLLSADFCQLEMRILAHLSQDKALL 1871

Query: 400  KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            K   + +DL+    A    +A + V++  R   K +   + Y  G ++  +      L  
Sbjct: 1872 KVMNSPQDLFTAIAAHWNKIAESDVSEQLRNGTKQICYGIVYGMGMRSLAE-----SLKC 1926

Query: 460  NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                  + +      +   + +   + +    +   +   G    R        +S   +
Sbjct: 1927 TEQEAQMISEQFHLAYAGIKAYASKVVKFARNNGYVETITGR--RRYLD---HINSGEPQ 1981

Query: 520  LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            L N+  +    +   G                                          S 
Sbjct: 1982 LKNQAERQAINSTIQG------------------------------------------SA 1999

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
             +     + R      +  E +   ++            +   ++VL +HDE++ E P  
Sbjct: 2000 ADIAKSAILRMEKNIARYREKL--GLA------------ENAVNLVLHLHDELIFEVPAD 2045

Query: 640  DEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRYR 674
                 + +  L M +       +PL+ +    + + 
Sbjct: 2046 KAKKVAKVLSLTMENCVK--LNVPLRVKLKIGRSWG 2079


>gi|281207443|gb|EFA81626.1| DNA polymerase theta short isoform [Polysphondylium pallidum PN500]
          Length = 1192

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 81/715 (11%), Positives = 183/715 (25%), Gaps = 147/715 (20%)

Query: 7    DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-PVELWDCVHDPVMPQV--------- 56
            D ET     L             V      +     V          +            
Sbjct: 540  DEETFFLPKL-----------FHVESIIVSWSPGLAVYQLPLAPSGGVADFKQSFYNDNW 588

Query: 57   --LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
              +K+ LE         NS  +  +L +   + +  HR I   +               E
Sbjct: 589  KLVKQVLEYPYSYKHIWNSKPQLKILLS-KGISLK-HRLIDPKIALWLTDSDLHKDKKLE 646

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             + + + K   G + +    K      L  R+   +         Y       T  + +R
Sbjct: 647  YVYMDNAK---GSKKMIGATKFHNISKLATRSGSTNHFDLAYQACYQ------TLILSQR 697

Query: 175  LEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            L               E  +  +   +   G   D  +     ++V  +   L  +   L
Sbjct: 698  LLKQLDPSSLKILFEIEMPVTPILARMEFIGIGFDDEICQNTRELVQKKIDYLIYKAHLL 757

Query: 226  TYGLVSSSRCLEKLKTWLFLETGLHLE---------DLTETTCQRVLSSNKKLTPQAIQV 276
               L        ++   ++    L              + +T    L +     P    +
Sbjct: 758  VPRLKLDMESKIQMSDVMYNWLKLTKPDSRTNKKVLKESYSTNAHHLETISHEHPFP-NI 816

Query: 277  FNNRMRASRSAVLKLNTLVEAM---NSDGRLRGTLQFLGASRTGRWSGCVFPPQNL---- 329
                 + S       + L +       +     +        TGR +      Q++    
Sbjct: 817  LMEYRKLSHHINNYADELRKYCYRSTDNSMRIYSTILQTIVPTGRLAMVFPNLQSIAHPI 876

Query: 330  -----PRPSRSHEELDQIITHLPTSITSDPDPL-------------QIISDCVRSCVIAS 371
                 P  + S   +    + +        +               + +S  +R   +  
Sbjct: 877  EFKVAPTFTPSPLSIASNSSDIEIPAVDLENHSSQYNNLVAMESKCETLSIKIRDSFLPK 936

Query: 372  EGKKLVVADLAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRA 430
            +G   + AD + IE R+LA  + +   L+ F     D++     +   +   Q+    R 
Sbjct: 937  QGYIFLSADYSQIELRILAHFSQDPKLLEIFNNSTVDVFKLISHQMSKIPLEQIKDSDRT 996

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
            I K +   + Y  G            LN                ++   ++   + ++  
Sbjct: 997  IAKHLCYGILYGMGIGKLAH-----DLNTTKDKAKAALLRFKTTYQVLTDYLTSVGDSCL 1051

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
            ++   + F G         + ++   V +     ++  E      K  I +         
Sbjct: 1052 KNGFVETFFGRK------RYFREVFEVYKDTKVTNEVKESAKRKAKNTIPQGTA------ 1099

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                                 D+ +  + +    +   R               +  +I+
Sbjct: 1100 --------------------ADI-SKLAMIQVDKKLNER--------------GIPAEIV 1124

Query: 611  AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLK 664
                +               E++ E P++     +++    M S    +  +P+K
Sbjct: 1125 ----LQVHD-----------ELLLEVPESQLAEVALIVKESMESAAKLSIPIPIK 1164


>gi|148872872|gb|ABR15063.1| DNA polymerase I [Campylobacter jejuni]
          Length = 234

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 86/256 (33%), Gaps = 38/256 (14%)

Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM--NSDGRLRGT 307
                  +T ++VL+      P   ++ + R   ++        L++    + + R+  +
Sbjct: 2   KKGKTGYSTDEKVLNILLDKHPVIAKILDYR-ELAKLYSTYCEPLLKLALKDKNSRIYSS 60

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
               G + TGR S      QN+P   +  ++                          +SC
Sbjct: 61  FLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY-------------------------KSC 94

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            +A +G   +  D + IE R+LA  + ++  L AF   ED++  T    F     +   +
Sbjct: 95  FVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYE 150

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R++ K +   L Y  G K   +      L +             E +   + +   ++ 
Sbjct: 151 TRSVAKSINFGLIYGMGYKTLSQ-----NLKIEANLAKSYIEKYFENFTSIKKYFEKVKN 205

Query: 488 NHPEHAIEDLFIGTAC 503
              ++       G   
Sbjct: 206 EAKQNGFIVTLSGRKR 221


>gi|195571339|ref|XP_002103661.1| GD20546 [Drosophila simulans]
 gi|194199588|gb|EDX13164.1| GD20546 [Drosophila simulans]
          Length = 967

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 97/672 (14%), Positives = 187/672 (27%), Gaps = 134/672 (19%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVAHNSYFERTV 79
           +   +F   D+    W+   D              Q L   +   D+T+V H+   +  +
Sbjct: 396 ISCVSFCRADNVAFYWNMQIDDRAACQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKM 455

Query: 80  LKACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           L+        I  +     V                 L +      E   L      G  
Sbjct: 456 LRKAIPQLQKISVKLEDAKVANWLLQP----DKTVNFLNMCQTFAPECTGLANLCGSGRG 511

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------------FKRLEPLSSKEQEL 185
           +               R   E C     VT  I                L+     E  +
Sbjct: 512 YSSYGLDTSSAILPRIRTAIESC-----VTLHILKGQTENLGRIGEGNLLKFFHDIEMPI 566

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
                 +   G+         L Q +     KL+ ++         +    + +   L  
Sbjct: 567 QLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQHGSR-FNLGSSQAVAKVL-- 623

Query: 246 ETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRL 304
             GLH +     TT ++VL      +P +  +   R + S      +  L+E   +D   
Sbjct: 624 --GLHRKARGRVTTSRQVLEKL--NSPISHLILGYR-KLSCLLAKSIQPLMECCQAD--- 675

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
           R   Q +  + TGR S      QN+ +                            ++   
Sbjct: 676 RIHGQSITYTATGRISMTEPNLQNVAK------------------EFCIQVGSDAVNISC 717

Query: 365 RSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           RS  +   E + L+ AD   +E R+LA M+ ++  L+   + +DL++   A    +  ++
Sbjct: 718 RSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIKESE 777

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
           VT D R   K +   + Y  G ++  +      LN +     + ++   E ++   ++ R
Sbjct: 778 VTPDLRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEQEARIISDQFHEAYKGIRDYTR 832

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
            +          +   G          R+     +     L +A  Q + +         
Sbjct: 833 RVVNFARGKGFVETITGR---------RRYLEMTNSDMEHLKKAERQAVNS--------- 874

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                         L +     R                                     
Sbjct: 875 TIQGSAADIAKNAILKMEKNIERYRE---------------------------------- 900

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLP 662
                              D+V+ +HDE++ E P       + +  + M S       +P
Sbjct: 901 -------KLA---LGDKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITMESCVK--LSVP 948

Query: 663 LKAEGYESKRYR 674
           LK +    + + 
Sbjct: 949 LKVKLRIGRSWG 960


>gi|163784119|ref|ZP_02179064.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880610|gb|EDP74169.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 374

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/489 (14%), Positives = 132/489 (26%), Gaps = 130/489 (26%)

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
             VD  L   +   +  +  ++  E                K+  WL  + G+ L    +
Sbjct: 1   MPVDKNLLKNMLTDIQSKYQRMYIEFVRNYGVDPF---SPAKVSNWLVNKVGITLPKTQK 57

Query: 257 TTCQRVLSSNKKLTP--QAIQVFNNRMRASRSAVLKLNTLVEAMNSDG----RLRGTLQF 310
                   + KK     +  Q+   R        LK        +       R+    + 
Sbjct: 58  GALSSQDKALKKYEHLKEVRQLMEIRTTKKLLDKLKELNEHTRNDPSDSDTVRIHSQFRQ 117

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
           +GA  TGR S      QN+P                                 +R     
Sbjct: 118 IGAP-TGRMSSSKPNLQNIP-------------------------------PELRVLFRP 145

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           S+G  ++VAD + IE R+ A    ++  + AF+ G+DL+  T +     +  ++TK++R 
Sbjct: 146 SKGYSMIVADYSQIELRIAAEYTNDEVMINAFKEGKDLHRFTASLITGKSYEEITKEERQ 205

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
           + K +   L Y    ++  + A                                      
Sbjct: 206 LAKAINFGLIYGISPRSLMEYARNN----------------------------------- 230

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                        +     + Q +    +   E  +   +  +                 
Sbjct: 231 ---YGVDISLKEAQDFHDKFFQHYRGFKKWHEETKEKLNKHRQ----------------- 270

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                  + +    GR +      +                          +QA   D+L
Sbjct: 271 -------ITVQSLLGRRMKVSRFTD---------------------AVNYPIQASGSDML 302

Query: 611 AEGM----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPS-WAKGLPLK 664
              +    +        IV  VHDEI+ E  +     A  +    M        K +P++
Sbjct: 303 KMAVNFFGILKKDLNAYIVNLVHDEIIVEAKEDITVQAKNILEESMKKAGKILLKKVPVE 362

Query: 665 AEGYESKRY 673
            E    K +
Sbjct: 363 YEANIVKSW 371


>gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29]
          Length = 478

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/585 (14%), Positives = 159/585 (27%), Gaps = 168/585 (28%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS---------SKEQELWYLDQTI 192
              +         +    Y   DV V  E+ + L+            + E +       +
Sbjct: 7   KEQQKSNWSGVLTQEQLIYAAKDVEVLCELDRILKDELCQYSLMEAFTLECKALPAMAQM 66

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV---------------------- 230
              G   +           + +  +L +E        +                      
Sbjct: 67  WRTGLPWNKENLAQRKLDYEHDIKELSKEFIRELDSALPEGQKLPRDEDDSFNLRAKDEG 126

Query: 231 -----------SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
                       +    ++LK+ L    G+ LE    +  +  LS      P      N 
Sbjct: 127 SVRAGTKKLKGFNLNSPQQLKSKLSAVLGVKLE----SVSKNALSEFAGHHPVVQMYLN- 181

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             +A +     + ++ E M  DG ++ +   LGA  TGR +      Q +P+        
Sbjct: 182 WKKAEK-RRQMITSIQEKMRPDGFVKASYMQLGAE-TGRMTCFNPNNQQIPKD------- 232

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                    R CV A +G  +V AD   +E R+ A +A ++  +
Sbjct: 233 ----------------------KQFRGCVEAPKGWLIVDADFGQMELRLAAAVAQDKKMI 270

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +AF+ GEDL+  T                R I K     L Y  GAK  +  A+ + +++
Sbjct: 271 QAFKDGEDLHTVTAEAI---------GCTRQIAKSANFGLLYGSGAKGLRNYAAGSNVSM 321

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                    +   +E+E                                        +++
Sbjct: 322 TLEEAQKVRSDWFQEFE---------------------------------------GIAK 342

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP-SGRSLVYRDVGNNRS 578
              + +                        +  K      + +P +G         N  +
Sbjct: 343 WHKKENDKANN---------------PNPRFKGKKCGIQFIEIPETGMRRDLPGDANRLT 387

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG---YDIVLTVHDE 631
                                  VQ     IL + +        +AG     I   VHDE
Sbjct: 388 VR-----------------CNTPVQGAGAAILKQALGKLWPLVREAGEETVRIAAAVHDE 430

Query: 632 IVCETPDTDEFN-ASMLYHLMTSN-PSWAKGLPLKAEGYESKRYR 674
           I+    +      A+ L  +M      W   +P  AE    K ++
Sbjct: 431 ILLLVREDAAEEWAATLKQVMEEAEAKWLGEIPALAEVSFGKTWQ 475


>gi|282857717|ref|ZP_06266926.1| DNA polymerase [Pyramidobacter piscolens W5455]
 gi|282584387|gb|EFB89746.1| DNA polymerase [Pyramidobacter piscolens W5455]
          Length = 656

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 96/713 (13%), Positives = 188/713 (26%), Gaps = 159/713 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L  D ET   +D T    C    D           D           P +P  ++     
Sbjct: 2   LIFDIETDGLLDATTKVHCLTIYDTET--------DESRLYSSRGDYPQIPVGVERLAAA 53

Query: 64  TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV---------- 112
             V    HN   F+   L   +    P    + TL ++R     + L  +          
Sbjct: 54  DCV--CGHNVLAFDIPALTKVYPSFAPKGEVVDTLTISRLI--WTNLADLDFTEIRRAKT 109

Query: 113 -GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
             + +    +K+     L A   +    +  +       +E       Y + DV VTR +
Sbjct: 110 PAQPMFFFPKKLVGSHSLKAWGYRLGVLKGEFGETTDW-QEWSEEMCAYNRQDVVVTRAL 168

Query: 172 FKRLEPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           ++R++           E +   +       G+  +   A      +   R +L QEL+ +
Sbjct: 169 WERIQEQDYSQTAIDLEHQFQKIILQQEQNGFPFNQEKAVLYYSQLAKRREELTQELQRI 228

Query: 226 TYGLV-----------------------------SSSRCLEKLKTWLFLETGLHL----E 252
                                              +    + +   L    G       E
Sbjct: 229 FPPEDKGDWFVPKVNNAKRGYVKGERVWRARITAFNPGSRKDIAERLRETRGWEPQEYTE 288

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
             T    + VLS+      +A+  +    +         N  ++ +  DGR+ G +   G
Sbjct: 289 RGTPKVDEEVLSALDWPEAKALSEYFLVQKRIGQLAEGNNAWLKLVGRDGRIHGHVITNG 348

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
           A  TGR +        +P                                  RS   A  
Sbjct: 349 A-VTGRCTHVSPNMAQVP------------------------AVGVPWGAEFRSLFYAPP 383

Query: 373 GKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           G  ++ AD +G+E R LA      +           D++         VA  +    +  
Sbjct: 384 GWSVLGADASGLELRCLAHFMARYDGGAYARKILEGDIHWANAQALGLVAEGEKKDPENP 443

Query: 431 --------IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                   + K    AL Y  G     ++     + L          +AP+   D  +  
Sbjct: 444 YHMWARNKVAKRFIYALNYGAGDHKLGEL-----VELTDDQAKALLAAAPKSKIDQTSAR 498

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
              Q  +     +D+        ++  + +    ++ L  ++ +  ++            
Sbjct: 499 LAKQFQYKTITFKDIAQSLKGAELRATFMKNLPALASLIEDVKRVAKK------------ 546

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            L+    R L  R + +                         ++
Sbjct: 547 --------------RGYLIGLDKRRLNVRSIHS---------------------AFNTLL 571

Query: 603 QAVSRDILAEG-MMNATKA-------GYDIVLTVHDEIVCETPDTDEFNASML 647
           Q+     + +   +                V  VHDE      + +E +   +
Sbjct: 572 QSAGAIAVKKATCVLWDDLTTAGLADKVQQVAHVHDEYQLLVKEGEEEHVGQI 624


>gi|109521899|ref|YP_655336.1| gp59 [Mycobacterium phage Pipefish]
 gi|88910630|gb|ABD58556.1| gp59 [Mycobacterium phage Pipefish]
          Length = 605

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 119/717 (16%), Positives = 213/717 (29%), Gaps = 192/717 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVH-DPVMPQVLKE 59
           T+  D ET         G+ +      +  + FA+ +DD  +           + +    
Sbjct: 36  TIATDIET--------PGLDRA---FEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL-----DIPIHRWICTLVLARSNGL----PSALK 110
            L     TI+ HN+ F+   L     L     +I I++ + TL+LAR          +L 
Sbjct: 85  DLYERAETIILHNAPFDIPAL-RHAGLFGTSPNIAINKVVDTLLLARFALPDVTVSKSLT 143

Query: 111 AVG-EALKLSSQKME-------EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
           A+    L LS  K          G + I    +G + E    R          L  E   
Sbjct: 144 ALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIATLKLEPLL 203

Query: 163 GDVTVTREIFKRL-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             + +   +               E +   ++ +  +      +G  VD        +  
Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEK 263

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSN 266
           D ER + +  L    +GL   +   +K+  +L     L               + +L   
Sbjct: 264 DAERIQHEALLA--AHGLEGGAGKGKKIVEYLESIGQLPANWPRTPTGGLKATKDLLDGF 321

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                 A +      +        L  +    +  GR    +  LGAS TGR +  +   
Sbjct: 322 DHPLTTAQRKLAEIDKVL----GYLTKVERQASVTGRCHPQVGVLGASATGRMAYSMPEL 377

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           Q  P+ +R                                 +I  +G+ L   D + IE 
Sbjct: 378 QQFPKDARP--------------------------------IITDDGQGLTSIDWSQIEP 405

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
             +A MAG+   L  FE   +       RS  +     TK+ R I KV+ LA  Y  G  
Sbjct: 406 VTMANMAGDVGFLIPFEA-GEDLYEPIQRSCGLPM---TKEGRDIAKVVLLATMYGMGVN 461

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                                                         A++      + +++
Sbjct: 462 GL--------------------------------------------ALKINHTVESAQQI 477

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           ++         ++    +    +Q                             ++  +GR
Sbjct: 478 RRQMLAAMPESAKWMARVQGIADQ--------------------------YGRIITAAGR 511

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
            L   D G  R                        VQ  + D+L + ++   +AG    L
Sbjct: 512 ILPVDDGGVFR-------------------AVNYTVQGSALDVLHDTIVRMERAGLADEL 552

Query: 627 TV--HDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAEGYESKR-YRK 675
            V  HDE++  TP      A  +  +M + P     WA  +P L+ +  + +  ++K
Sbjct: 553 HVAMHDELIVSTP-----VADEVQQIMLTPPDFLIRWAGRVPVLRTDAADMEHAWKK 604


>gi|260878762|ref|ZP_05891117.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308091309|gb|EFO41004.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034]
          Length = 683

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 101/775 (13%), Positives = 185/775 (23%), Gaps = 196/775 (25%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDD-HPVELWD---CVHDPVMP 54
           M   L  D ET   I+          E   +   A    D        D    +    + 
Sbjct: 1   MNERLCYDIETDGLIE----------EVTKLHCIAIINVDTLEEALYADSLVMMTQGTIK 50

Query: 55  QVLKEALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS----------- 102
             L     N     + HN   ++  V+      ++P  +   TLV +R            
Sbjct: 51  DGLDRL--NKASLTLGHNIIKYDHPVINKLTGYELPKDKSFDTLVASRLVFSNIKDIDQG 108

Query: 103 ---------NGLPSALKAVGEALKLSSQKMEE--GKELIARFCKGETHECLYDRNKPNH- 150
                         +L+A G  L    QKME     +                ++     
Sbjct: 109 NSGKYTLGKLFGSHSLEAWGIRLG-GQQKMEYAPVIDPAQPVYDPTVKPKDAKKDPRWKG 167

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDV 201
                + G+YC  DV V  E+F+RLE    +         E E  ++       G+  D 
Sbjct: 168 SIFTPMMGDYCMQDVRVNVELFRRLERKIHQLGYARSMLLEHEAAWVLAQQERNGFKFDE 227

Query: 202 ALAHTLNQIVDVERTKLDQELESLTY---------------------------------- 227
             A  L   +   R  L  +L                                       
Sbjct: 228 EKAIKLLGRLAGRREYLYNKLIETFGGWWVSDGVSVPARTINYKDPTKPSRVQGAPFTKV 287

Query: 228 -GLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             +  +      +   L                   + +L        + +  +    + 
Sbjct: 288 KWVDFNPSSRRHIIKVLTDRGWTPQEFTPSGEAKVDESILKELDFPEARLMAEWFLVQKR 347

Query: 284 SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                      +  ++ DG +RG++   GA  TGR +        +P  S          
Sbjct: 348 LGQLADGNQAWLNTVHPDGFIRGSVNPNGA-VTGRATHSFPNVAQVPSCSAE-------- 398

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKA 401
                                R      +G  L+ +D +G+E R LA      +  K   
Sbjct: 399 ----------------YGAECRELFTVPDGWYLLGSDASGLELRCLANFMARYDDGKYID 442

Query: 402 F-------ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                    +           +       + ++ R   K    A  Y  GA+        
Sbjct: 443 VVLNGDIHWSNAQAAGFIPKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAE---LTGQQ 499

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G         +   +          F R  +    E     +      E V+K + +  
Sbjct: 500 VGWTEEE---YLNWKAKGAHKPIINRFKRQGKPWTREK----ICNILKGEEVQKNFMKGL 552

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             +  L +E  +  ++                             +    GR +  R   
Sbjct: 553 PALKNLIDECKELHKE--------------------------QGYIEGIDGRRIYTRSAH 586

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYD------- 623
            +                        ++Q     +    ++   K     G         
Sbjct: 587 AS---------------------LNTLLQGAGALVCKAWIVEIEKLAIAEGLKHGIDGDF 625

Query: 624 I-VLTVHDEIVCETPDTD-EFNASMLYHLMTSNPSWAKGLP--LKAEGYESKRYR 674
           +    VHDE+       +       L  +  +N          L A+    K ++
Sbjct: 626 MYCAWVHDEVQIACRTKEIAERIGQLCQVAMTNVEKEFNFVCRLDADFDIGKSWK 680


>gi|145334203|ref|NP_001078482.1| DNA-directed DNA polymerase family protein [Arabidopsis thaliana]
 gi|62241195|dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis
            thaliana]
 gi|332660705|gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana]
          Length = 2154

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 92/722 (12%), Positives = 188/722 (26%), Gaps = 151/722 (20%)

Query: 29   CVILFAFGFDDHPVELWDCVHDPVMPQVL--KEALENT---------------------- 64
             +   A  ++  PV   +   D    + +  ++ +E+                       
Sbjct: 1500 EIHGIAICWNCSPVYYVNLNKDLPNLECVEKQKLIEDAVIGKSEVLASHNMLDVIKSRWN 1559

Query: 65   DVTIVA---------HNSYFERTVLK-------ACFNLDIPIHRWICTLV-LARSNGLPS 107
             ++ +           N   +  VLK        C  L++P       LV  +     P 
Sbjct: 1560 KISKIMGNVNTRKFTWNLKVQIQVLKSPAISIQRCTRLNLP-EGIRDELVDGSWLMMPPL 1618

Query: 108  A-------------LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                          L    E     +   E  K L     +       +           
Sbjct: 1619 HTSHTIDMSIVIWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQI------R 1672

Query: 155  RLFGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALA 204
            R+    C   V  TR +   L  +           + E  L  +   +   G  +D+   
Sbjct: 1673 RVAHNGCCRRVAQTRALCSALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGC 1732

Query: 205  HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE---TT 258
                 I+  +   L+++   L      S      +   LF +  L +       +   +T
Sbjct: 1733 LRARNILRDKLRSLEKKAFELAGMT-FSLHNPADIANVLFGQLKLPIPENQSKGKLHPST 1791

Query: 259  CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLR-GTLQFLGASR 315
             +  L   +   P    +  +R  A         + +L +   S  R          ++ 
Sbjct: 1792 DKHCLDLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRWLQTSTA 1851

Query: 316  TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-SEGK 374
            TGR S      Q++        + +                        R   +   E  
Sbjct: 1852 TGRLSIEEPNLQSVEHEVEFKLDKNGRDVSSDADRYKINA---------RDFFVPTQENW 1902

Query: 375  KLVVADLAGIEARVLAWMAGEQWKLKA-FETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
             L+ AD + IE R++A  + +   +    +   D++    A+    A   V+   R   K
Sbjct: 1903 LLLTADYSQIELRLMAHFSRDSSLISKLSQPEGDVFTMIAAKWTGKAEDSVSPHDRDQTK 1962

Query: 434  VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
             +   + Y  GA    +      L   +     K  S    +    ++         E  
Sbjct: 1963 RLIYGILYGMGANRLAE-----QLECTSDEAKEKIRSFKSSFPAVTSWLNETISFCQEKG 2017

Query: 494  IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                  G      K  +        +  ++  +    ++  G A    K   + +     
Sbjct: 2018 YIQTLKGRRRFLSKIKFGNA-----KEKSKAQRQAVNSMCQGSAADIIKIAMINI----- 2067

Query: 554  DKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG 613
                            Y  +  +     +++   TR +   G+                 
Sbjct: 2068 ----------------YSAIAEDVDTAASSSSSETRFHMLKGR--------------CRI 2097

Query: 614  MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKR 672
            ++               E+V E   +    A+ML    M +  S    +PL  +    K 
Sbjct: 2098 LLQVHD-----------ELVLEVDPSYVKLAAMLLQTSMENAVSLL--VPLHVKLKVGKT 2144

Query: 673  YR 674
            + 
Sbjct: 2145 WG 2146


>gi|74002862|ref|XP_545125.2| PREDICTED: similar to DNA polymerase theta (DNA polymerase eta)
           [Canis familiaris]
          Length = 576

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 129/476 (27%), Gaps = 92/476 (19%)

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               E    Y    +   G         +   I+  +   ++ +   L     S +   +
Sbjct: 129 FCKVEMPSQYCLALLELNGIGFSTTECESQKHIMQAKLDAIEIQAYQLAGHSFSFTSSDD 188

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL------ 291
                                 + VL+  K L P    +   R   +  A+ K+      
Sbjct: 189 IA--------------------EDVLNKLKALHPLPGLILEWRRITN--AITKVVFPLQR 226

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------------- 331
              +       R+    Q   A+  GR +      QN+PR                    
Sbjct: 227 EKRLNPFLGMERIYPVSQSHTAT--GRITFMEPNIQNVPRDFEIKMPILVGESPPSQALA 284

Query: 332 --------PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
                     R          H         D     S  +R   +   G  ++ AD + 
Sbjct: 285 KGLLPVYGRGRGKRSCGPNSGHQAQVEERASDQGMPFSVSMRHAFVPFSGGLILAADYSQ 344

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E R+LA ++ ++  ++   TG D++ +  A    + P  V  D R   K +   + Y  
Sbjct: 345 LELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGM 404

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
           GAK+  +      + +          S    +    +F R   +N   +      +G   
Sbjct: 405 GAKSLGE-----QMGIKENDAACYIESFKSRYTGINHFMRETVKNCKRNGFVQTILGR-- 457

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                  R+    +++     +  + +              D   +     K  L  + P
Sbjct: 458 -------RRYLPGIND-----NNPYHKAHGKHSHGQYINDCDCIPIRPYLQKQELSQIWP 505

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            G       V +             R+           VQ  + DI+    +N  K
Sbjct: 506 EGLPTSGPTVPSLN---------AERQAI------NTTVQGSAADIVKIATVNIQK 546


>gi|222435728|ref|YP_002564156.1| gp58 [Mycobacterium phage Phlyer]
 gi|222088281|gb|ACM42222.1| gp58 [Mycobacterium phage Phlyer]
          Length = 605

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 119/717 (16%), Positives = 212/717 (29%), Gaps = 192/717 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVH-DPVMPQVLKE 59
           T+  D ET         G+ +      +  + FA+ +DD  +           + +    
Sbjct: 36  TIATDIET--------PGLDRA---FEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL-----DIPIHRWICTLVLARSNGL----PSALK 110
            L     TI+ HN+ F+   L     L     +I I++ + TL+LAR +        +L 
Sbjct: 85  DLYERAETIILHNAPFDIPAL-RHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLT 143

Query: 111 AVG-EALKLSSQKME-------EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
           A+    L LS  K          G + I    +G + E    R          L  E   
Sbjct: 144 ALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIATLKLEPLL 203

Query: 163 GDVTVTREIFKRL-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             + +   +               E +   ++ +  +      +G  VD        +  
Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQEIVHRVMLRRTGKGLAVDHEYLTRYQEEK 263

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSN 266
           D ER + +  L    +GL   +   +K+  +L     L               + +L   
Sbjct: 264 DAERIQHEALLA--AHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGF 321

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                 A +      +        L  +       GR    +  LGAS TGR +  +   
Sbjct: 322 DHPLTIAQRKLAEVDKVL----GYLTKVERQAAVTGRCHPQVGVLGASATGRMAYSMPEL 377

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           Q  P+ +R                                 +I  +G+ L   D + IE 
Sbjct: 378 QQFPKDARP--------------------------------IITDDGQGLTSIDWSQIEP 405

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
             +A MAG+   L  FE   +       RS  +     TK+ R I KV+ LA  Y  G  
Sbjct: 406 VTMANMAGDVGFLIPFEA-GEDLYEPIQRSCGLPM---TKEGRDIAKVVLLATMYGMGVN 461

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                                                         A++      + +++
Sbjct: 462 GL--------------------------------------------ALKIKHTVESAQQI 477

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           ++         ++    +    +Q                             ++  +GR
Sbjct: 478 RRQMLAAMPESAKWMARVQGIADQ--------------------------YGRIITAAGR 511

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
            L   D G  R                        VQ  + D+LA  ++   +AG    L
Sbjct: 512 ILPVDDGGVFR-------------------AVNYTVQGSAYDVLASTIVRMEEAGLGDHL 552

Query: 627 TV--HDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAEGYESKR-YRK 675
            +  HDE++ +T       A  +  +M + P     WA  +P L+ +  +  R + K
Sbjct: 553 QLAMHDELIVDT-----EVADDVQQIMLTPPDFLIRWAGRVPVLRTDAADMGRAWAK 604


>gi|221108884|ref|XP_002170257.1| PREDICTED: similar to DNA polymerase theta, partial [Hydra
           magnipapillata]
          Length = 493

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/550 (12%), Positives = 142/550 (25%), Gaps = 112/550 (20%)

Query: 154 WRLFGEYCKGDVTVTREIFK--RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                 Y   +  +   + +   ++     E         I   G          L +I+
Sbjct: 22  IEAVTVYHLME-EMELRLKREDLIKSFVDIEMPTIRTLLVIEINGIGFSDIECEKLKEIL 80

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
             +   + QE   L+   V S      +                      VL    K   
Sbjct: 81  KGKLDSIQQECYKLSGS-VFSLSSPADVAR-------------------EVLEKLSKFHA 120

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---SRTGRWSGCVFPPQN 328
               +     + + +    +  +     S   L+    F  A   + TGR +      QN
Sbjct: 121 LPKLIL-EWRKINSTLTKFVYPVQRRKRSSDVLQMHRIFTEAIYRTCTGRVTFSEPNLQN 179

Query: 329 LPR--------------------PSRSHEEL---DQIITHLPTSITSDPDPLQIISDCVR 365
           +P+                      +   +L    + +              ++ +  +R
Sbjct: 180 VPKEFDIKLSSLVVKSPPHQITGNKKHKRQLVSSTRPLLSQQKDKHIGSSTTEMFTVSMR 239

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
           S  +      +V AD   +E R++A M+ +Q  +K      D++ +  A   ++    VT
Sbjct: 240 STFVPFSSGVMVAADYEQLELRIIAHMSQDQILIKTLNESGDVFKSIAAEINHINVVDVT 299

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
             QR   K +   + Y  G KA         L +               ++  + F +  
Sbjct: 300 TVQRQHAKQICYGIIYGIGIKALSHQ-----LGVEENDASEYMEKFKNRFKGVKRFIQNT 354

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            E    +       G             +S+++   +   +    T   G A    K   
Sbjct: 355 IEEARANGFVKTLGGRKRYLP-----AINSKITNDKSHAERQAVNTTIQGSAADLVKI-- 407

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                                             +N    +L     +G           
Sbjct: 408 ---------------------------------AMNNIDIKL--NKIFGNSCFN------ 426

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLK 664
                      +   G  +VL +HDE++ E    +      ++   M S       +P+K
Sbjct: 427 -----KLA-EKSQPKGAYLVLQIHDELLYEVNKENVDIVIKLIRREMESAIILTVKMPVK 480

Query: 665 AEGYESKRYR 674
                   + 
Sbjct: 481 V--KIGSSWG 488


>gi|194303251|ref|YP_002014665.1| gp54 [Mycobacterium phage Phaedrus]
 gi|194150983|gb|ACF34018.1| gp54 [Mycobacterium phage Phaedrus]
          Length = 605

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 118/717 (16%), Positives = 212/717 (29%), Gaps = 192/717 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVH-DPVMPQVLKE 59
           T+  D ET         G+ +      +  + FA+ +DD  +           + +    
Sbjct: 36  TIATDIET--------PGLDRA---FEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL-----DIPIHRWICTLVLARSNGL----PSALK 110
            L     TI+ HN+ F+   L     L     +I I++ + TL+LAR +        +L 
Sbjct: 85  DLYERAETIILHNAPFDIPAL-RHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLT 143

Query: 111 AVG-EALKLSSQKME-------EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
           A+    L LS  K          G + I    +G + E    R          L  E   
Sbjct: 144 ALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIATLKLEPLL 203

Query: 163 GDVTVTREIFKRL-----------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             + +   +               E +   ++ +  +      +G  VD        +  
Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEK 263

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSSN 266
           D ER + +  L    +GL   +   +K+  +L     L               + +L   
Sbjct: 264 DAERIQHEALLA--AHGLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGF 321

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                 A +      +        L  +       GR    +  LGAS TGR +  +   
Sbjct: 322 DHPLTIAQRKLAEVDKVL----GYLTKVERQAAVTGRCHPQVGVLGASATGRMAYSMPEL 377

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           Q  P+ +R                                 +I  +G+ L   D + IE 
Sbjct: 378 QQFPKDARP--------------------------------IITDDGQGLTSIDWSQIEP 405

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
             +A MAG+   L  FE   +       RS  +     TK+ R I KV+ LA  Y  G  
Sbjct: 406 VTMANMAGDVGFLIPFEA-GEDLYEPIQRSCGLPM---TKEGRDIAKVVLLATMYGMGVN 461

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                                                         A++      + +++
Sbjct: 462 GL--------------------------------------------ALKIKHTVESAQQI 477

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           ++         ++    +    +Q                             ++  +GR
Sbjct: 478 RRQMLAAMPESAKWMARVQGIADQ--------------------------YGRIITAAGR 511

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
            L   D G  R                        VQ  + D+LA  ++   +AG    L
Sbjct: 512 ILPVDDGGVFR-------------------AVNYTVQGSAYDVLASTIVRMERAGLGDHL 552

Query: 627 TV--HDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAEGYESKR-YRK 675
            +  HDE++ +T       +  +  +M + P     WA  +P L+ +  +  R + K
Sbjct: 553 QLAMHDELIVDT-----EVSDEVQQIMLTPPDFLIRWAGRVPVLRTDAADMGRAWAK 604


>gi|308497564|ref|XP_003110969.1| CRE-POLQ-1 protein [Caenorhabditis remanei]
 gi|308242849|gb|EFO86801.1| CRE-POLQ-1 protein [Caenorhabditis remanei]
          Length = 927

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 65/486 (13%), Positives = 122/486 (25%), Gaps = 118/486 (24%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +   G   D +  ++           L++E+  L      +     ++   +F   GL  
Sbjct: 534 MFYTGISFDHSKCNSFITNTRQRIELLEEEIWRL-AHGKFNIDSSNEVANVIFHRLGLIY 592

Query: 252 EDLTE--------TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
            + +          T + +L   K       ++   R             L+       R
Sbjct: 593 PETSSCKMKQRHLPTNKLILEQMKNQHKIVGKILEYRH----IQHTLTQCLLPLSIYSTR 648

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +    +    + TGR    V   QN+P+                         +      
Sbjct: 649 IHC--RMEMCTATGRILTTVPNLQNVPKR------------------------VSTEGLS 682

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
            R    AS G+ L+ AD   +E RVLA ++ +   ++      DL+              
Sbjct: 683 ARQLFKASSGRILISADFKQLELRVLAHLSNDSKLIELICADRDLFGELSVEWN------ 736

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                R + K +   L Y  G K   ++       +          S    +     +  
Sbjct: 737 ---FSRDVVKQLCYGLIYGMGPKTLAELTK-----VKVAEAEKMLCSFFSMFPGLYLYLS 788

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                                              G  +     
Sbjct: 789 -------------------------------------------------NKGTYLYVTGV 799

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R       +       +    GR                   ++ R            +Q
Sbjct: 800 RSYINETKEHVSKEECVQTILGRKKFL-----KSGLTGEEKARVERVA------VNYTIQ 848

Query: 604 AVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWA 658
             + +I    ++         G  IVLT+HDE + E P+      S +    M S+ S  
Sbjct: 849 GTASEIFKVAIVEIESKIKAYGARIVLTIHDEFLVECPENRTPVISEIIRDCMQSSLSDI 908

Query: 659 KGLPLK 664
             +P+K
Sbjct: 909 LRVPMK 914


>gi|331087492|ref|ZP_08336428.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330410472|gb|EGG89903.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 164

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 6/133 (4%)

Query: 4   LFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L ID ET S ++L K G+ +YAE  D  V+LF +  D   V++ D V    +P+ +  AL
Sbjct: 23  LEIDIETFSSVNLAKAGVYRYAESPDFEVLLFGYSVDGGEVKVGDLVKGEKIPEEVMSAL 82

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGEALK 117
           E+  VT  A N+ FER  +      +    +    W C++V +   GLP +L+ VG  L 
Sbjct: 83  EDEAVTKWAFNAQFERICISRMLGYEAGTYLVPASWKCSMVWSAYMGLPLSLEGVGAVLG 142

Query: 118 LSSQKMEEGKELI 130
           L  QK+ EGK+LI
Sbjct: 143 LEKQKLTEGKDLI 155


>gi|167933049|ref|ZP_02520136.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7b]
          Length = 190

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 78/214 (36%), Gaps = 32/214 (14%)

Query: 242 WLFLETGLHLE-----DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
            LF++  L            +T Q+ L+  + L P    +   R   ++     ++ L +
Sbjct: 1   MLFIKLQLPTTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTR-ELAKLKNTYVDALPK 59

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
            ++ + RL  T        TGR S      QN+P  S                       
Sbjct: 60  LVDKNYRLHTTFNQDVV-STGRLSSTHPNLQNIPIRS----------------------- 95

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +   +R+  IA E   LV AD +  E R+ A MAG++  +  F    D++  T +  
Sbjct: 96  --TLGKKIRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDV 153

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
           + +   QVT +QR   KV+   + Y         
Sbjct: 154 YKIPMDQVTSNQRRNAKVINFGVLYGMSPHGLSA 187


>gi|74221544|dbj|BAE21491.1| unnamed protein product [Mus musculus]
          Length = 822

 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 138/406 (33%), Gaps = 59/406 (14%)

Query: 67  TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117
            +V  N+  F RTVL   +  D               V A          + + +    K
Sbjct: 316 PVVCFNAKDFVRTVL-QLYGEDGSWKHVADFVGLDPRVAAWLIDPSDTAPSFEDL--VAK 372

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              + +           K  +      RN  +      L   Y      +T ++  +L+ 
Sbjct: 373 HLEKSIT---------VKPSSTFREASRNTLSQNVFMNLKILY-----DLTMDLCSKLKA 418

Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
               +        L  +   + +    VD       + ++     +L+QE   +      
Sbjct: 419 YGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAG-EQF 477

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +L+  LF +  LHL    +           +T + +L+S + L P    +   R
Sbjct: 478 LIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYR 537

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +     ++ L+  M   G +  T    G + TGR S      Q + +      +  
Sbjct: 538 Q-VHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPW 594

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                   ++T  P          R+  ++SEG   + AD + IE R+LA ++G+   LK
Sbjct: 595 NFKGKEEETVTISP----------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLK 644

Query: 401 AFE--TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
            F+    +D++ T  ++  ++   +VT   R   K +  ++ Y  G
Sbjct: 645 LFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAG 690



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 22/150 (14%)

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
           +    R     V          +    GR      +            Q  R+       
Sbjct: 670 VTHMDREQTKKVVYSVVYGAGYVTSILGRRRPLPRICAQDQ---QLRAQAERQA------ 720

Query: 598 TENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPDTDE-FNASMLYH 649
              +VQ  + D+    M+  + A          +V  +HDE++ E  DT     A+++  
Sbjct: 721 VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRR 780

Query: 650 LMT-----SNPSWAKGLPLKAEGYESKRYR 674
           +M              +PLK      + + 
Sbjct: 781 IMESLQQVQTLELQLQVPLKVNLSVGRSWG 810


>gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 244

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 95/331 (28%), Gaps = 106/331 (32%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
                 +  SDGR+  T +   A+ TGR S      QN+P    +  E            
Sbjct: 4   TQPTSRSHRSDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRDPAGRE------------ 50

Query: 351 TSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        +RS  +  EG + L+ +D + +E R++A ++G++  ++AF +G D +
Sbjct: 51  -------------IRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFH 97

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
               +  + V   ++T DQR+  K M   L Y            +  L            
Sbjct: 98  KYVASLVYGVPVDEITPDQRSHVKAMSYGLAYG-----LSTYGLSQQL------------ 140

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                             E +K+ +     +V E    L  +  
Sbjct: 141 ---------------------------GIKPGEAESLKRQYFATFGKVHEYLESLVSSAR 173

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +                                  GR   +  + +    +        R
Sbjct: 174 E--------------------------KGYTETIYGRRRYFPGLKSPNRAVRDA---AER 204

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKA 620
                       +Q  + DI+   M+ A  A
Sbjct: 205 AALNAP------IQGSAADIMKIAMIRADDA 229


>gi|298528005|ref|ZP_07015409.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511657|gb|EFI35559.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 914

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 82/595 (13%), Positives = 150/595 (25%), Gaps = 155/595 (26%)

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                 K L     +         R          +   Y   D  VTR IF        
Sbjct: 411 YTKSLFKVLKKLPPEILDIPGSVARKVNYGDLPREILLPYAAMDAMVTRVIFTEQYRKME 470

Query: 181 KEQELWYLD------------------------QTINDRGYCVDVALAHTLNQIVDVERT 216
           ++                                 +  +G  +D          VD +  
Sbjct: 471 EDYTQIKRLEIAEKTTDLAKTLRFMTMPLAPKISEMEYQGIRIDREKLEDFIARVDAKIP 530

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN--KKLT 270
           +L   + S     ++ S     LK  LF E        T+    +T +  +     K   
Sbjct: 531 ELKDRIFSSIGRKINLSSSSGDLKRVLFKEKRYEPVKYTKTGDFSTDKNSMEVLYEKNED 590

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                +   R    +            +  DGRL  +L   G +     +      QN P
Sbjct: 591 EFIRDLLILRR-VEKVRETYFINWRGEIEYDGRLHFSLNQHGTATYRLSANKG--LQNAP 647

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVL 389
                                     L+ I   V+S  +   E   +   D+A  E RVL
Sbjct: 648 ------------------------AYLKEIDLNVKSLFLPDSEEYDIFDLDIANAELRVL 683

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ----------VTKDQRAIGKVMELAL 439
              + ++  ++AF  G D++  T A+  +    +               R +GK +    
Sbjct: 684 CGYSKDETLIEAFNQGLDIHSLTAAKISDFTYEEIKAAKEDKTSEQHKLRQLGKKINFGT 743

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y  GA +  K                                                 
Sbjct: 744 VYSMGATSLSKQLWAES--------------------------------------RIKVS 765

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
               ++    + +++ +V E   +                                    
Sbjct: 766 EDEAKQYLNKFFEEYPKVKEYMEKTRAFARAHR--------------------------F 799

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +   +GR   +  +G +    N    +  R+           +Q  S DI+   +++   
Sbjct: 800 VYTYTGRRRRFPMLGVD----NHQKFKAFRQAINCR------IQTTSADIVNTNLVDLDD 849

Query: 620 A----GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS---------NPSWAKGL 661
           A    G  ++LTVHD I+ + P        +L  ++T             W   +
Sbjct: 850 AIKPLGGRVLLTVHDSILFQLPKDTAGVTELLDQVITENTKNKFPWLPVEWKYDV 904


>gi|297802740|ref|XP_002869254.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315090|gb|EFH45513.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 2147

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 97/728 (13%), Positives = 192/728 (26%), Gaps = 162/728 (22%)

Query: 29   CVILFAFGFDDHPVELWDCVHDPVMPQVL--KEALENT---------------------- 64
             +   A  ++  PV   +   D    + +  ++ +E+                       
Sbjct: 1492 EIHGIAICWNSSPVYYVNLNKDLPNLECVEKQKLIEDAVVGKNEVLATHNMFDVIKSRWN 1551

Query: 65   DVTIVA---------HNSYFERTVLK---------ACFNL--DIPIHRWICTLVLARSNG 104
             ++ +           N   +  VLK            NL   I     +     +    
Sbjct: 1552 KISKIMGNVNTRKFTWNLKVQIQVLKSPAISIQRCNRLNLAEGIRDLELVD---GSWLMM 1608

Query: 105  LPSALKAVGEALKLSSQKMEEGKELIARFCK-----GETHECLYDRNKPNHREAWRL--- 156
             P         L+ S          I    +         + +  R  P   EA      
Sbjct: 1609 PP---------LRTSHTIDMSIVTWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGR 1659

Query: 157  --------FGEYCKGDVTVTREIFKRLEPLS----------SKEQELWYLDQTINDRGYC 198
                        C   V  TR +   L  +           + E  L  +   +   G  
Sbjct: 1660 WRNQIRRVAHNGCCRRVAQTRALCSALWKILVSEELLEALTTTEMPLVNVLADMELWGIG 1719

Query: 199  VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLT 255
            VD+        I+  +   L+++   L      S      +   LF +  L +       
Sbjct: 1720 VDIEGCLRARNILRDKLRSLEKKAFELAGMT-FSLHNPADIANVLFGQLKLPIPENQSKG 1778

Query: 256  E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLR-GTLQ 309
            +   +T +  L   +   P    +  +R  A         + +L +   S  R       
Sbjct: 1779 KLHPSTDKHCLDLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRW 1838

Query: 310  FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               ++ TGR S      Q++        E++ I+      + SD D  +I +   R   +
Sbjct: 1839 LQTSTATGRLSIEEPNLQSVEH------EVEFILDKNGKDVNSDADSYKINA---RDFFV 1889

Query: 370  A-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-DLYVTTYARSFNVAPAQVTKD 427
               E   L+ AD + IE R++A  + +   +      E D++    A+    A   V+  
Sbjct: 1890 PTQENWLLLTADYSQIELRLMAHFSRDSSLISQLRQPEGDVFTMIAAKWTGKAEGSVSPH 1949

Query: 428  QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
             R   K +   + Y  GA    +      L  ++     K  S    +    ++      
Sbjct: 1950 DRDQTKRLIYGILYGMGANRLAE-----QLECSSDEAKEKIRSFKSSFPAVTSWLNETIS 2004

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
               E        G      K  +        +  ++  +    ++  G A    K   + 
Sbjct: 2005 FCQEKGYIQTLKGRRRFLSKIKFGNA-----KEKSKAQRQAVNSMCQGSAADIIKIAMIN 2059

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
            +     +  +                   R ++        R                  
Sbjct: 2060 IYSAIAEDVDTT---------ASSSSSETRFHM-----LKGRCRI--------------- 2090

Query: 608  DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
                  ++               E+V E   +    A+ML    M +  S    +PL  +
Sbjct: 2091 ------LLQVHD-----------ELVLEVDPSYVKVAAMLLQTSMENAVSLL--VPLHVK 2131

Query: 667  GYESKRYR 674
                K + 
Sbjct: 2132 LKVGKTWG 2139


>gi|258539931|ref|YP_003174430.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705]
 gi|257151607|emb|CAR90579.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705]
          Length = 191

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 61/224 (27%), Gaps = 44/224 (19%)

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           + +       +          A NF      +    A          +     + +++ +
Sbjct: 1   MKIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGISRKQAKAFIDGYFEQYPK 60

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           V +         ++  E+G                              R      + + 
Sbjct: 61  VHDYM---ENMVKKAREDGYVETL-----------------------FHRRRYLPQIHSR 94

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHD 630
                   +   R            +Q  + DI+   M+   KA         ++L VHD
Sbjct: 95  NF---NLRKFAERTAMNTP------IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHD 145

Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           E++ E P  +      L   +M S  S A  +PLK E +    +
Sbjct: 146 ELIFEAPTAEMAQLGQLVPKIMDSAVSLA--VPLKVESHYGPTW 187



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 34/128 (26%), Gaps = 10/128 (7%)

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           +P +VT D R   K     + Y               + ++        +   E++    
Sbjct: 8   SPDEVTPDMRRQAKATNFGIVYGIS-----DYGLAQNIGISRKQAKAFIDGYFEQYPKVH 62

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
           ++   M +   E    +        R       ++  + +      +    T   G A  
Sbjct: 63  DYMENMVKKAREDGYVETLFHR--RRYLPQIHSRNFNLRKF---AERTAMNTPIQGSAAD 117

Query: 540 ARKRRDVP 547
             K   + 
Sbjct: 118 IIKVAMIR 125


>gi|320156437|ref|YP_004188816.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
 gi|319931749|gb|ADV86613.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
          Length = 684

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 103/771 (13%), Positives = 185/771 (23%), Gaps = 195/771 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHP----VELWDCVHDPVMPQVLK 58
           L  D ET   I+              +   A    D H      +    +    +   L 
Sbjct: 6   LCYDIETDGLIEDVT----------RIHCIAIINVDTHEEALYADYLVMMTKGTIKDGLD 55

Query: 59  EALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS--------------- 102
             +       + HN   ++  V+K    +++P  +   TLV AR                
Sbjct: 56  RLMR--AQLTLGHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNIKDIDQRNSGK 113

Query: 103 -----NGLPSALKAVGEALKLSSQKMEE--GKELIARFCKGETHECLYDRNKPNH-REAW 154
                     +L+A G  L   + KME     +                ++         
Sbjct: 114 YTLGKLFGSHSLEAWGIRLG-GNLKMEYAPVIDPDQPVYDPTVKPKDAKKDPRWKGSIFT 172

Query: 155 RLFGEYCKGDVTVTREIFKRLEPL---------SSKEQELWYLDQTINDRGYCVDVALAH 205
            + G+YC  DV V  ++F RLE              E +  ++       G+  D   A 
Sbjct: 173 PMMGDYCMQDVRVNVDLFHRLERKAAELNYARSLKLEHDAAWVLAQQERNGFKFDEEKAI 232

Query: 206 TLNQIVDVERTKLDQELESLTY-----------------------------------GLV 230
            L   +   R  L  EL                                         + 
Sbjct: 233 KLLGRLAGRREFLYGELIRTFGGWWVSEGVVVPERTVNYKNPLTASRTQGAPFTKVKWVD 292

Query: 231 SSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +      +   L                   + +L   K    + +  +    +     
Sbjct: 293 FNPSSRRHIIKVLTDRGWTPEEFTPSGEAKVDETILKDLKFPEAKLMAEWFLVQKRLGQL 352

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                  +  ++ DG +RG++   GA  TGR +        +P                 
Sbjct: 353 ADGNQAWLNTVHPDGFIRGSVNPNGA-VTGRATHSFPNVAQVPSCGAE------------ 399

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETG 405
                            R      EG  L+ +D +G+E R LA      +  K       
Sbjct: 400 ------------YGAECRELFTVPEGWWLLGSDASGLELRCLANFMARYDDGKYIDVVLN 447

Query: 406 EDLYVTTYAR-------SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            D++             +       + ++ R   K    A  Y  GA+         G  
Sbjct: 448 GDIHWANAQAAGFIAKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAE---LTGQQVGWT 504

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +   +          F R  +    E            E V+K + +    + 
Sbjct: 505 EEE---YLNWKAKGAHKPIINRFKRQGKPWTREKV----CNILKGEEVQKNFMKGLPALK 557

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            L     +  +                           N  +    GR +  R    +  
Sbjct: 558 NLIEICKEQHKT--------------------------NKYIEGIDGRRIYTRSEHAS-- 589

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYD-------I-VL 626
                                 ++Q     +    ++   K    AGY        +   
Sbjct: 590 -------------------LNTLLQGAGALVCKAWIVEIEKLAIQAGYKHGADGDFMYCA 630

Query: 627 TVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLP--LKAEGYESKRYR 674
            VHDE+       +       L  +  SN          L A+    K ++
Sbjct: 631 WVHDEVQIACRTKEIAEHIGQLCQVAMSNVEKEFNFICRLDADFQIGKSWK 681


>gi|90420964|ref|ZP_01228868.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
 gi|90334742|gb|EAS48518.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1]
          Length = 798

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/482 (14%), Positives = 136/482 (28%), Gaps = 93/482 (19%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVE-------LW--------DCVHDPVMPQVLKE 59
           D    G+        VIL  F +              +               +   +K 
Sbjct: 291 DAEGTGLVWCKGSTRVILNQFSYRPGESFMAPTHPLYYEKVFNDPNPGAKAEALQGQVKR 350

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL 116
            LE+  V  +AHN  F+  V      +++       T ++A       +  +L       
Sbjct: 351 FLEDERVRKLAHNLKFDHQVSAR-EGIEVR-GWLHDTQLMAFFADENMMSKSLDDCTRVW 408

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                   +   +     K          +       +     Y  GD      + +RL+
Sbjct: 409 VPEMAGYADNFNMAIDKSKMMDVPPDDILDADGKVVQYG-MRNYAGGDTDACLRLAQRLD 467

Query: 177 PLSSKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
            +  ++   +   + I               G  VD     +L   V         E+  
Sbjct: 468 KILREDPRQYQCYRRIQMPAIIAFAKVVERYGLSVDKEHLRSLADQVAQYTDAKYDEIVR 527

Query: 225 LTYG----------LVSSSRCLEKLKTWLFLE--TGLHLEDLTETT-------------C 259
           L                S      ++  LF +   GL  +  T++T              
Sbjct: 528 LIPPALRRDYLRRGEEISFTRDVVMRDILFGKKGFGLTPKVFTKSTAKLPPAQRVPSVST 587

Query: 260 QRVLSSNKKLTPQAIQVFN---NRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQF 310
           +  +   +     A +      + ++  +     +      +   + +  DG +  + + 
Sbjct: 588 KDHMPYFEDAPGNAGRFVTGYIDFLKQQKLITTYIGSEEKQSGFWQYIAPDGAIYPSYKL 647

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
             A+ TGR +      QN P+  R  +  +                             A
Sbjct: 648 H-ATVTGRSASDNPNGQNFPKRGRFAKSYN-------------------------KVFKA 681

Query: 371 SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
             G KLV ADL+ IE R+ AWMA E   L+ +    D++ +T A +         + + +
Sbjct: 682 RPGYKLVSADLSQIELRIAAWMANEPEMLRIYRADGDIHASTGAATAGWTDEFFAQHKNS 741

Query: 431 IG 432
             
Sbjct: 742 DA 743


>gi|71897667|ref|ZP_00679912.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71732570|gb|EAO34623.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 169

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 91/168 (54%), Gaps = 11/168 (6%)

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-- 571
              ++  W  L  A    I + +            + ++  +  L L LPSGR L Y   
Sbjct: 6   FPAIAAFWQALQCAVTDAIGHPETA-----HTCCGIAVQYSRAWLRLRLPSGRVLYYAAP 60

Query: 572 --DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
             D     SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLT
Sbjct: 61  RVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYSIVLT 120

Query: 628 VHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           VHDEI+ E  D   FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 121 VHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 168


>gi|229915743|ref|YP_002884389.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
 gi|229467172|gb|ACQ68944.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b]
          Length = 853

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 116/418 (27%), Gaps = 124/418 (29%)

Query: 281 MRASRSAVLKLNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
            + +      +    + +N    R+         + TGR +      QN+PRP     + 
Sbjct: 519 QKYTTLISSHIVGRQKYLNPFTDRIHAGYSSF--TDTGRLNSFKPNGQNVPRPDNDDFK- 575

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +RS      GK L   D +G E R++AW + ++  +
Sbjct: 576 ------------------------IRSFFAPKPGKILFFIDFSGFELRLIAWKSNDEVMI 611

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           + F T  D++  T +       + +TK +R   K     + Y G   A Q          
Sbjct: 612 ELFNTNGDMHRRTASALTGKPESDITKIERTNAKAGNFGIAYGGTEYALQ---------- 661

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                                          +           C  +  A +  + R+ +
Sbjct: 662 ----------------------------KTFKTDYGVRKTLDECAAIVNAVKTAYPRIPQ 693

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
           +     QA     ENG A                           G   + RD+    S 
Sbjct: 694 MQR---QAILDARENGYAETIY-----------------------GYKRLLRDINGTNSK 727

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------------------- 620
           L  +  +         +     +Q  + DI+ +                           
Sbjct: 728 LRGSDER---------RAGNTPIQGSAADIMKDCQNKVYDRIGEDTFKQRQGETDVLFTH 778

Query: 621 -GYDIVLTVHDEIVCETPDTD---EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
              D++  +HDE++ E  D     E   + +  +M   P     +P+ AE    K + 
Sbjct: 779 GSIDMIAQIHDEMIFEMDDDPALVEKAGAWIKAVMERPPLPDFPVPVIAEASVGKDWG 836


>gi|326567456|gb|EGE17571.1| DNA polymerase I [Moraxella catarrhalis BC1]
          Length = 835

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/582 (12%), Positives = 137/582 (23%), Gaps = 141/582 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L  D ET       + G   Y+        AF +  H    +           LK   E+
Sbjct: 181 LACDIETTGL----ELGSELYS-------IAFAWSQHKGCAFKVTDK----VQLKRFFES 225

Query: 64  TDVTIVAHNSYFERTVLKAC-------------FNLDIPIHRWICTLVLARSNGLPSALK 110
               ++ HN+ F+   +                  L         T ++A      +   
Sbjct: 226 YSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKIIAYL----ATNN 281

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
             G  L L        KEL   F      +  +  N P          EY   D   T  
Sbjct: 282 TQGNILGL--------KELSHEFVGNYAIDVKHVLNHP-----LATVLEYNLKDTLATYW 328

Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +F + +P            +           I   G  +++     + + +  +     +
Sbjct: 329 VFNKYKPKMLSDNQDSIYKTIMLPSIKTIIQIELHGMPMNMDKVVIVKKQLQNQANDALE 388

Query: 221 ELE-------------------------------SLTYGLVSSSRCLEKLKTWLFLETGL 249
           ++                                     L         L   L+   GL
Sbjct: 389 QIYASEHVKAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSTAHLAILLYDYLGL 448

Query: 250 H----LEDLTETTCQRVLSSNKKLTPQAIQV-----FNNRMRASRSAVLKLNTLVEAMNS 300
                  +         +    + T     +          +  +     +    +A   
Sbjct: 449 PILDYTPNKQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQK 508

Query: 301 DGR--LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           D    L G+   LG + + R S      Q LP  S   +                     
Sbjct: 509 DDWHYLHGSFN-LGGTLSNRLSSSNPNLQQLPSGSTYGKT-------------------- 547

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ-----WKLKAFETGEDLYVTTY 413
                ++ C  A +    V AD   +E R+   +  +      W           Y    
Sbjct: 548 -----IKQCFQAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFA 602

Query: 414 ARSFNV--------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            +  ++        +      + R   K    AL Y G     Q          +     
Sbjct: 603 NQMPDIINTKESINSIKHKYPELRQESKAPSFALQYGG-----QYFTLMKNCGFSESKAK 657

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
               +  + +E ++ + +   E   +    D+  G       
Sbjct: 658 EIETNYHKMYEVSDAWTQRKLEQCAKQGYIDVAFGLRIRTPV 699


>gi|262155784|ref|ZP_06028907.1| DNA polymerase [Vibrio cholerae INDRE 91/1]
 gi|262030375|gb|EEY49016.1| DNA polymerase [Vibrio cholerae INDRE 91/1]
          Length = 684

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 101/771 (13%), Positives = 184/771 (23%), Gaps = 195/771 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFD-DHPVELWD---CVHDPVMPQVLK 58
           L  D ET   I+              +   A    D        D    +    +   L 
Sbjct: 6   LCYDIETDGLIEDVT----------RIHCIAIINVDTHEEALYADYLVMMTKGTIKDGLD 55

Query: 59  EALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS--------------- 102
             +       + HN   ++  V+K    +++P  +   TLV AR                
Sbjct: 56  RLMR--AQLTLGHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNIQDIDQRNSGK 113

Query: 103 -----NGLPSALKAVGEALKLSSQKMEE--GKELIARFCKGETHECLYDRNKPNH-REAW 154
                     +L+A G  L   + KME     +                ++         
Sbjct: 114 YTLGKLFGSHSLEAWGVRLG-GNLKMEYAPVIDPDQPVYDPTVKPKDAKKDPRWKGSIFT 172

Query: 155 RLFGEYCKGDVTVTREIFKRLEPL---------SSKEQELWYLDQTINDRGYCVDVALAH 205
            + G+YC  DV V  ++F RLE              E +  ++       G+  D   A 
Sbjct: 173 PMMGDYCMQDVRVNVDLFHRLERKVAELNYARSLKLEHDAAWVLAQQERNGFKFDEEKAI 232

Query: 206 TLNQIVDVERTKLDQELESLTY-----------------------------------GLV 230
            L   +   R  L  EL                                         + 
Sbjct: 233 KLLGRLAGRREFLYNELIRTFGGWWVSDGVVVPERTVNYKNPLTASRTQGAPFTKVKWVD 292

Query: 231 SSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +      +   L                   + +L   K    + +  +    +     
Sbjct: 293 FNPSSRRHIIKVLTDRGWTPEEFTPSGEAKVDETILKDLKFPEAKLMAEWFLVQKRLGQL 352

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                  +  ++ DG +RG++   GA  TGR +        +P                 
Sbjct: 353 ADGNQAWLNTVHPDGFIRGSVNPNGA-VTGRATHSFPNVAQVPSCGAE------------ 399

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETG 405
                            R      EG  L+ +D +G+E R LA      +  K       
Sbjct: 400 ------------YGAECRELFTVPEGWWLLGSDASGLELRCLANFMARYDGGKYIDVVLN 447

Query: 406 EDLYVTTYAR-------SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            D++             +       + ++ R   K    A  Y  GA+         G  
Sbjct: 448 GDIHWANAQAAGFIAKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAE---LTGQQVGWT 504

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                  +   +          F R  +    E            E V+K + +    + 
Sbjct: 505 EEE---YLNWKAKGAHKPIINRFKRQGKPWTREKV----CNILKGEEVQKNFMKGLPALK 557

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
            L     +  + +                            +    GR +  R    +  
Sbjct: 558 NLIEICKEQHKTSK--------------------------YIEGIDGRRIYTRSEHAS-- 589

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYD-------I-VL 626
                                 ++Q     I    ++   K     GY        +   
Sbjct: 590 -------------------LNTLLQGAGALICKAWIVEIEKLAIQSGYRHGADGDFMYCA 630

Query: 627 TVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLP--LKAEGYESKRYR 674
            VHDE+       +      +L  +  S+          L A+    K ++
Sbjct: 631 WVHDEVQIACRTKEIAEHIGLLCQVAMSHVEKEFNFICRLDADFQIGKSWK 681


>gi|29566249|ref|NP_817817.1| gp56 [Mycobacterium phage Rosebush]
 gi|29424974|gb|AAN01898.1| gp56 [Mycobacterium phage Rosebush]
          Length = 609

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 101/709 (14%), Positives = 182/709 (25%), Gaps = 194/709 (27%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIVA 70
           D+   G+ +   +  +      +          L D +  P      ++         V 
Sbjct: 46  DIETPGLDR---NFEINCLTAAWIGWDGTIESVLLDPIRWPAHRAAARDVFARASKL-VF 101

Query: 71  HNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLP--------SALKAVGEAL----- 116
           HN+ F+   L     +D   I +   T++LAR               L+A    L     
Sbjct: 102 HNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHLLGLVD 161

Query: 117 ---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR---------------EAWRLFG 158
               +       G + I    +    +    R                       W    
Sbjct: 162 VAGGMERAFKAAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVEWTTSH 221

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            + +   T   E       +   ++   ++    + RG  VD        +    +R + 
Sbjct: 222 PFAEFGATTEAE----ALEVLEVQEIAHWVMLQRSARGLAVDRDYLDEYREREHDKRLEH 277

Query: 219 DQEL--ESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTETTCQRVLSSNKKLTPQAIQ 275
              L    L  G       ++ L+    L +          +  +  L +     P A  
Sbjct: 278 AAFLAQYDLEGGTGKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETL--DHPVAAA 335

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                          L  +       GR    +  LGAS TGR S      Q  P+ +R 
Sbjct: 336 QRALAQSDKVL--GYLEKVSRQAAVTGRCHPQVAILGASATGRMSYGSPELQQFPKDARP 393

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                                           +I  +G+ L   D A IE   +A MAG+
Sbjct: 394 --------------------------------IIVDDGQGLTSVDWAQIEPVTMALMAGD 421

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +  L  F   +        R+  +         R + KV+ LA  Y  G           
Sbjct: 422 REFLAPFFENDADLYEPIMRACGID--------RPMAKVILLATMYGQG----------- 462

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                                A        +  ++++       
Sbjct: 463 ---------------------------------ARSMARRIGHTEESAAQIRRQMLAAMP 489

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
              +   ++                                +  ++   GR L     G+
Sbjct: 490 ASRDFMAKVESIAIT--------------------------HGRIVTGGGRILPVDQQGS 523

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV--HDEIV 633
            R                       I Q  + D+LA  ++   +AG    + +  HDE+V
Sbjct: 524 YR-------------------AVNYICQGSAYDVLAHTIVRLDEAGLSGHVQLAMHDELV 564

Query: 634 CETPDTDEFNASMLYHLMTSNPS----WAK--GLPLKAE-GYESKRYRK 675
            +T       A+ + H+M + P     WAK     L+ +      R+ K
Sbjct: 565 VDT-----DVAAEVEHIMMTPPEFLTRWAKRDDFMLRTDRADMGHRWAK 608


>gi|226377780|ref|YP_002790829.1| DNA polymerase [Lactobacillus phage Lb338-1]
 gi|225921558|gb|ACO37071.1| DNA polymerase [Lactobacillus phage Lb338-1]
          Length = 1046

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 85/655 (12%), Positives = 161/655 (24%), Gaps = 202/655 (30%)

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP--- 177
            K +  K  +               N         +   Y  GD   T  +  +L     
Sbjct: 438 YKDKVVKATMDLANIST-SNVFSGGNFSYEWIPMEIMYYYAAGDADATLRVHNKLLQLIR 496

Query: 178 -------------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                          +   +L +    I + G  VD A    +  +   +  +L+ ++  
Sbjct: 497 EDPLNKDGRIEDLYLNFYPKLVHALACIQNHGMQVDDAYLTKITGLYADKAEELNNDIRK 556

Query: 225 LTYGLVSS----------------------------------------SRCLEKLKTWLF 244
           L                                               +     + T L+
Sbjct: 557 LPAVKDFEEYQLGLYNEGVKEFAKPPKERDKTIFGYRAKFKDDKYKFSASRANDIATILY 616

Query: 245 LETGLHLE-----------DLTET----------TCQRVL--------SSNKKLTPQAIQ 275
              G  L               +           T +  L         +  K T    +
Sbjct: 617 KNLGYALPYGKDFIKDTVWKKNKPEEQIIWSDYKTNKVALDYVNSQAKEAGDKDTEDLTK 676

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
           +       ++ +    ++L E  +   +L G    +G + T R S      QNLP     
Sbjct: 677 MLAKFSIVNKISSSFTDSLREYTDDTMKLHGHFSAVG-TETSRLSSSQINLQNLP----- 730

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAG 394
                                L      ++   ++     KL+  D + +E  +LA +  
Sbjct: 731 --------------AEKSNTHLFNYKYPIKRMFVSRFPNGKLINLDYSSLEFHILALVTK 776

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           E     AF  G+D++ +  A  ++V    V  +QR   K +   L Y             
Sbjct: 777 EDSMTGAFLEGKDIHTSNAALMYDVPYEDVIVEQRKAAKSIGFGLIY------------- 823

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                           +     A +        +     + +  
Sbjct: 824 -------------------------------GKGDAALAEDLGLSLEEAQEKINTFFKSK 852

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            RV      + +A +    NG        R                          R++G
Sbjct: 853 PRVKAF---IDKAHKFAENNGYVTTLNGFR--------------------------RNLG 883

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------IVLTV 628
              S       +  R+          I+Q     +    ++   +          I+ TV
Sbjct: 884 GAFSTDYGKRSKAQRQS------VNTIIQGSGAILTNTAVIILNELLAKSKFKSVIIATV 937

Query: 629 HDEIVCETPDTDEFNASMLY-HLMTSN-PSWAK--------GLPLKAEGYESKRY 673
           HD I+ + P+ +    S L  ++M      W            P++AE    K Y
Sbjct: 938 HDSILIDCPEEEIDKVSTLALYVMEHLDYPWLFTNYKGKRIRYPIEAEVDIGKTY 992



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 43/186 (23%), Gaps = 55/186 (29%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ----------- 55
           D ET +     K           +I+ +F + +         H     +           
Sbjct: 204 DTETNTLKPNKKG--------AKIIVISFAWAEGKACAIPVGHCERYSETGTTLNGKPSY 255

Query: 56  ----VLKEALE--------------------------NTDVTIVAHNSYFERTV-LKACF 84
                +KE  +                          +T +  V HN  F+    L    
Sbjct: 256 FTKKDVKEIFDMLDDLTRAKTIGDIHPKVPVTMTLPKDTRLIKVGHNIAFDEHFMLATGH 315

Query: 85  NLDIPIHRWICTLVLARSNGL-----PSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
             ++     + TL                L  +  +L       +  +E      K    
Sbjct: 316 AKELDFVNVVDTLTGHYLEISQDKKTSRHLSDLAFSLTSIGGYDKPLEEYKTWLVKLINK 375

Query: 140 ECLYDR 145
             +Y R
Sbjct: 376 AIMYVR 381


>gi|195500591|ref|XP_002097437.1| GE24491 [Drosophila yakuba]
 gi|194183538|gb|EDW97149.1| GE24491 [Drosophila yakuba]
          Length = 2043

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 94/666 (14%), Positives = 189/666 (28%), Gaps = 121/666 (18%)

Query: 30   VILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVAHNSYFERTV 79
            +   +F   D+ V   +  +D              Q L + L   D+TIV H+   +  +
Sbjct: 1471 IAGLSFCLADNVVYYMNMQNDDRATGQGVPTILKVQELCKLLARKDLTIVMHDGKEQLKI 1530

Query: 80   LKACFNLDIPI-HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
            L         I  +     V          +        +      E   L      G  
Sbjct: 1531 LLKAIPQLQKICAKLEDPKVANWLLQPDKTM----TFYNMCQTFAPECTALADLCGSGRG 1586

Query: 139  HECLYDRNKPNHREAWRLFGEYC------KGDVTVTREIF--KRLEPLSSKEQELWYLDQ 190
            +               R   E C      KG       I   + L+     E  +     
Sbjct: 1587 YSSYGLDTSSAILPKIRASIEACVTVHILKGQTENLGRIGSGQLLKFFHDIEMPIQLTLC 1646

Query: 191  TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
             +   G+         L Q +     KL+ ++         +    + +   L L    +
Sbjct: 1647 HMEFVGFPAQQQRLQQLYQKMVAVMRKLETKIYEQHGSR-FNLGSSQTVAKVLGLHRKAN 1705

Query: 251  LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
                   T ++VL      +P +  +   R  A   A   +  L++   +D   R   Q 
Sbjct: 1706 GRVT---TSRQVLEKI--NSPISQLILGYRKVAGLLA-KSIQPLLKCCEAD---RIHGQS 1756

Query: 311  LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
            +  + TGR S      QN+ +                            +    R   + 
Sbjct: 1757 ITYTATGRISMTEPNLQNVAK------------------EFCIQVGSDALRIACRLPFVP 1798

Query: 371  -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
              E + L+ AD   +E R+LA M+ ++  L+   + +DL++   A    +  ++V++D R
Sbjct: 1799 KDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIEESEVSQDLR 1858

Query: 430  AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
               K +   + Y  G ++  +      LN +     + +    + ++    +   + +  
Sbjct: 1859 NSTKHVCYGIVYGMGMRSLAE-----SLNCSEQEARMISEQFHQAYKGIREYTSRVVKFA 1913

Query: 490  PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                  +   G    R        +S   +L N+  +    +   G A    K       
Sbjct: 1914 RNQGFVETITGR--RRYLD---NINSDEEQLKNQAERQAINSTIQGSAADIAK------- 1961

Query: 550  YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                    L +     R      +G+                                D+
Sbjct: 1962 -----SAILKMEKNIERYRDKLVLGDQSV-----------------------------DL 1987

Query: 610  LAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGY 668
            +               + +HDE++ E P       + +  L M +       +PLK +  
Sbjct: 1988 I---------------MHLHDELIFEVPAAKAKKIAKVLSLTMENCVK--LSVPLKVKLR 2030

Query: 669  ESKRYR 674
              + + 
Sbjct: 2031 IGRSWG 2036


>gi|328873005|gb|EGG21372.1| DNA polymerase theta short isoform [Dictyostelium fasciculatum]
          Length = 989

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 79/647 (12%), Positives = 172/647 (26%), Gaps = 162/647 (25%)

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K  +EN +     +N   +  +L +  ++ +     +   V A                 
Sbjct: 425 KIIMENPNSYKYLYNCRAQIKMLMS-MDIHVKKG-IMDPRVGAWLLDP------------ 470

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR--L 175
               K      L+  F + +      D      R     +  +       TR  F R   
Sbjct: 471 -DKYKDTTLDTLVREFSQDKKLSTNVDELNHYDRSFHHCYRSFVLMKQLFTRFHFNRDLY 529

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           +  +  E  L  +   +   G   D A        V  +   ++ +   +   L  S   
Sbjct: 530 KIFNEMEMPLLVILAKMEYNGIGFDDATCQNTKYEVLQKLQYIEVKARLMVPDLKFSMSS 589

Query: 236 LEKLKTWLFLET---GLHLEDLTE------TTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
            E +   L+       +   +  +      +T   +L +  +      ++     + S  
Sbjct: 590 KEDMSNILYNVLRVVDIPKANRGKIVKRHHSTKAAILEAVPEEKAAFPKMLIEWRKLSHH 649

Query: 287 AVLKLNTLVE--AMNSDG---RLRGTLQFLGASRTGRWSGCVFPPQ-------------- 327
            +  ++ L +    N D    R+  T+       TGR +      Q              
Sbjct: 650 LLNYVHVLFKFGYYNPDYEMMRIYTTIMQTNVP-TGRLAMTYPNLQSIANAFTFRESPIS 708

Query: 328 ---------------------------NLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                                      N+           + I  L T    + +   +I
Sbjct: 709 FSDVSTNNVSKASSSASQHCSPPYDHHNVTVDYSPSPNESKSIGSLSTLELKEDNCR-LI 767

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY--ARSFN 418
           +  +R   I  +G   + AD + IE R+LA ++ ++  L      +  +  T     +  
Sbjct: 768 TVRIRDSFIPRKGYLFLSADYSQIELRILAHLSEDKLLLDGLNNPDFDFFKTMFVQMNKG 827

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
                VT ++R I K +                    G+   + A+ +  +         
Sbjct: 828 TRIEDVTAEERDIAKELCY--------------GILYGMGTWSLANKLDRDE-------- 865

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
                                      +K+     +  + +  + + +            
Sbjct: 866 ----------------------KEARILKEKLYNTYRDLIKYIDSVKK------------ 891

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                         +      +     R        +N +       +  R      K  
Sbjct: 892 --------------RYHQVGYVETFYHRKRFL----DNNTRDKVEIEKEKR------KAV 927

Query: 599 ENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHDEIVCETPDT 639
            +I Q  + DI+ + M++        K    +VL +HDE++ E  + 
Sbjct: 928 NSIPQGTAADIIKQAMISIDRIFEEQKTPALMVLQIHDELLFEVRED 974


>gi|294083961|ref|YP_003550718.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663533|gb|ADE38634.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 587

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 105/719 (14%), Positives = 192/719 (26%), Gaps = 182/719 (25%)

Query: 1   MATLFIDFETRS-PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
           M  ++ D E+     DLTK           +   A    D P E W       +   +K+
Sbjct: 1   MRYVW-DLESNGFLEDLTK-----------IHCIAMMNADDPKETW-VFGPNDIKAGMKK 47

Query: 60  ALENTDVTIVAHNS-YFERTVLKA-CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
             E T++  + HN    +   L     N  +   +   TLVL+R              L 
Sbjct: 48  LAEATEI--IGHNILGHDVPALMKVYPNFSLDGVKLTDTLVLSRLITADLRNDDYERILS 105

Query: 118 LSS--QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           +    +K      L A   +   ++  +        E  +   +YC+ DV V   ++K L
Sbjct: 106 IDDFPRKYYGSHSLKAWGYRLGEYKGDFGEQTDWS-EWTQGMQDYCEQDVVVNYAVWKHL 164

Query: 176 EPL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +P          E ++  +   I   G+  +V  A  L   +  E+ +L+ EL+ L    
Sbjct: 165 DPDSYSQRAIDFEHKMAEICHRIGKAGWHFNVEKAGILYGQLAGEKAQLESELKELFPPW 224

Query: 230 V-----------------------------SSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
                                          +    + ++  L  +        T +   
Sbjct: 225 TKEEIFIPKRNNKTLGYVADEPFIKCKEITFNPNSRKHIQRCLMDKYDWKPRQFTYSGDA 284

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAV----LKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           ++        P        R    +  +       N  +  +     L   +   GA  T
Sbjct: 285 KIDEGVLSRLPYPEAKKLARSFLLQKRIGMLAEGNNAWLRLV-EGNTLCHVINPNGA-VT 342

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR +   F    +P                                  R      EG  L
Sbjct: 343 GRATHFNFNTAQVP------------------------SVRAPYGKECRELFGVPEGYSL 378

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
           V +DL+G+E R LA +  +Q K        D+++         +            K   
Sbjct: 379 VGSDLSGVELRCLANVLQDQGKYANIILNADIHLANMHSMGLTSRD--------QAKTAI 430

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
             + Y GG                                                    
Sbjct: 431 YCMIYGGGDARL--------------------------------------------GEVV 446

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                    ++  + + +   ++L  +L Q   +                          
Sbjct: 447 GKGAAEGRTLRNNFMKANPAFADLVRQLKQVVTK-------------------------- 480

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
              L+   GR L  R      + L  +   L  +       TE   Q +  +I+A     
Sbjct: 481 RGHLVGLDGRKLAVRG-HAQLNVLLQSAAALLSKKWVELIDTEIATQGIDAEIIAW---- 535

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS--WAKGLPLKAEGYESKRY 673
                      VHDE+  +    DE N   +   M       +   +P+++E    + +
Sbjct: 536 -----------VHDEVQIKVRKGDEENVGHITGRMAEEAGKFFKFKIPIESEFNIGRNW 583


>gi|326573170|gb|EGE23139.1| DNA polymerase I [Moraxella catarrhalis CO72]
          Length = 835

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 73/582 (12%), Positives = 136/582 (23%), Gaps = 141/582 (24%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L  D ET       + G   Y+        AF +  H    +           LK   E+
Sbjct: 181 LACDIETTGL----ELGSELYS-------IAFAWSQHEGCAFKVTDK----VQLKRFFES 225

Query: 64  TDVTIVAHNSYFERTVLKAC-------------FNLDIPIHRWICTLVLARSNGLPSALK 110
               ++ HN+ F+   +                  L         T ++A      +   
Sbjct: 226 YSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKIIAYL----ATNN 281

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
             G  L L        KEL   F      +  +  N P          EY   D   T  
Sbjct: 282 TQGNILGL--------KELSHEFVGNYAIDVKHVLNHP-----LATVLEYNLKDTLGTYW 328

Query: 171 IFKRLEPLS----------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +F + +P            +           I   G  +++     + + +  +     +
Sbjct: 329 VFNKYKPKMLSDNQDSIYKTIMLPSIKTIIQIELHGMPMNMDKVVVVKKQLQNQANDALE 388

Query: 221 ELE-------------------------------SLTYGLVSSSRCLEKLKTWLFLETGL 249
           ++                                     L      +  L   L+   GL
Sbjct: 389 QIYASEHVKAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSIAHLAILLYDYLGL 448

Query: 250 H----LEDLTETTCQRVLSSNKKLTPQAIQV-----FNNRMRASRSAVLKLNTLVEAMNS 300
                  +         +    + T     +          +  +     +    +A   
Sbjct: 449 PILDYTPNKQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQK 508

Query: 301 DGR--LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           D    L G+   LG + + R S      Q LP  S                         
Sbjct: 509 DDWHYLHGSFN-LGGTLSNRLSSSNPNLQQLPSGS------------------------- 542

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ-----WKLKAFETGEDLYVTTY 413
                ++ C  A +    V AD   +E R+   +  +      W           Y    
Sbjct: 543 TFGKTIKQCFQAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFV 602

Query: 414 ARSFNV--------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
            +  ++        +      + R   K    AL Y G     Q          +     
Sbjct: 603 NQMPDIINTKESINSIKHKYPELRQESKAPSFALQYGG-----QYFTLMKNCGFSESKAK 657

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
               +  + +E +  + +   E   +    D+  G       
Sbjct: 658 EIETNYHKMYEVSNAWTQRKLEQCAKQGYIDVAFGLRIRTPV 699


>gi|9964623|ref|NP_064753.1| RP DNA pol [Roseobacter phage SIO1]
 gi|9944314|gb|AAG02598.1|AF189021_17 RP DNA pol [Roseobacter phage SIO1]
          Length = 580

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 68/532 (12%), Positives = 129/532 (24%), Gaps = 126/532 (23%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-DHPVELWDCVHDPVMPQVLKEAL 61
            +  D ET              A D  VI                        ++ K+  
Sbjct: 2   EVVFDIETD-------------ALDATVIHVLVAKRVGQKGFYV-VRDAETFKRLAKQV- 46

Query: 62  ENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEAL 116
                  + HN   F+   +K  +   IP+     TLV++R          +L A+    
Sbjct: 47  ----TLWIGHNVIGFDIPQIKKLWGYGIPLKDVADTLVMSRLLDPTRKGGHSLDALS--- 99

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                                        +  +          YCK DV +  +++ +L+
Sbjct: 100 ------------------------GNEKIDFHDFSTYTPEMLAYCKQDVAINEKVYLQLK 135

Query: 177 PLS--------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT-- 226
                        E ++  +       G+ +D  +A  +      E  +++ E++     
Sbjct: 136 EELSNFGKASIQLEHQMQAIVCEQEKNGFMLDTDIAEEIYTTCLRETNRIEAEIKEFMVP 195

Query: 227 ------------------------------------YGLVSSSRCLEKLKTWLFLETGLH 250
                                                    +     ++   L    G  
Sbjct: 196 IAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYTKIAWEEFNLGSPAQVNKRL-DRLGWK 254

Query: 251 LEDLTETTCQ-----RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
               T++          L++     P+A++          +        ++     GR+ 
Sbjct: 255 PTVKTKSGNSYKICPENLATIPDTAPEAVKGLKAWKVLE-TRWKLAQEWLQKSQETGRVH 313

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
           G +   GA  T R +       N+P      + +   +               +     R
Sbjct: 314 GRVILTGA-VTHRAAHQGPNMANIPSVPHGKDGILWKME-------------GMYGAECR 359

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
                 EGK LV  D AGI+ RVLA    +           +  +     +FN       
Sbjct: 360 QAFKVPEGKLLVGTDAAGIQLRVLAHYMNDP-------IYTEQVIDGDIHTFNKEALGRY 412

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
              R   K    A     G      +        N             +   
Sbjct: 413 CKDRPTAKTFIYAFLLGAGTGMIASILGCNNRQANEAMANFYEAIPSLKKLK 464


>gi|258539932|ref|YP_003174431.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705]
 gi|257151608|emb|CAR90580.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705]
          Length = 690

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 100/320 (31%), Gaps = 24/320 (7%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            + + L +++  +   +    R ++ A    L +P       L+ +           +G+
Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLHLPDIA-FDVLLASYLINPDENSNDLGK 418

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGDVTVTRE 170
                  +  +  +L               R  P  +  +  F             +T +
Sbjct: 419 I-----AEDHDYHDLPRDEDVYGKGA---KRQVPEDKLLFEQFARKSQALFALRPDLTED 470

Query: 171 IFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           + K+ +     + E+    +   +  +G  ++      +          L++++      
Sbjct: 471 LAKQEQTDLFTDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEAGV 530

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    ++L   LF +  L +   T+   +T   VL+  K  +P    + + R   ++
Sbjct: 531 K-FNLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYR-GWAK 588

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                +  L++A   D ++         ++TGR S      QN+P           +   
Sbjct: 589 LNSTYVVGLLKAQMPDHKIHTRYLQ-TLTQTGRLSSVDPNMQNIPARDEGKIIRKPLSLL 647

Query: 346 LPTSITSDPDPLQIISDCVR 365
           +        +  +    C R
Sbjct: 648 IRIGRFLARNIRKSNYACYR 667


>gi|322502534|emb|CBZ37617.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1257

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 95/372 (25%), Gaps = 103/372 (27%)

Query: 303  RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
             L       G + TGR S      QNLPR                 +     +  +    
Sbjct: 957  TLHPNFLQEG-TDTGRLSCVEPNLQNLPRNGI----------AAAVAGNDAEEDGEEDLL 1005

Query: 363  CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
              R C +A+ G  L+  D   IE RVLA + G+   + A  T  D++       F   P 
Sbjct: 1006 GFRRCFVATGGCVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP- 1064

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             V+ ++R++ K +   + Y                                         
Sbjct: 1065 -VSTEERSLAKRVVFGVLYG---------------------------------------- 1083

Query: 483  RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                      A            +          +      + +                
Sbjct: 1084 ----AGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEAR------------- 1126

Query: 543  RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                          N  +   SGR     D+ +      +      R+         ++V
Sbjct: 1127 -------------ANGFVRTLSGRLRYLPDIRSTVLSRRSY---AERQA------FNSVV 1164

Query: 603  QAVSRDILAEGMMNATKA--------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTS 653
            Q  + D++   M+  +K            ++  +HDE+V             ++   M+ 
Sbjct: 1165 QGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSH 1224

Query: 654  NPSWAKGLPLKA 665
                   +PL  
Sbjct: 1225 AMQLL--VPLSV 1234


>gi|146098918|ref|XP_001468508.1| mitochondrial DNA polymerase I protein A [Leishmania infantum]
 gi|134072876|emb|CAM71592.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            infantum JPCM5]
          Length = 1257

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 95/372 (25%), Gaps = 103/372 (27%)

Query: 303  RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
             L       G + TGR S      QNLPR                 +     +  +    
Sbjct: 957  TLHPNFLQEG-TDTGRLSCVEPNLQNLPRNGI----------AAAVAGNDAEEDGEEDLL 1005

Query: 363  CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
              R C +A+ G  L+  D   IE RVLA + G+   + A  T  D++       F   P 
Sbjct: 1006 GFRRCFVATGGCVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKKKP- 1064

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             V+ ++R++ K +   + Y                                         
Sbjct: 1065 -VSTEERSLAKRVVFGVLYG---------------------------------------- 1083

Query: 483  RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                      A            +          +      + +                
Sbjct: 1084 ----AGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEAR------------- 1126

Query: 543  RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                          N  +   SGR     D+ +      +      R+         ++V
Sbjct: 1127 -------------ANGFVRTLSGRLRYLPDIRSTVLSRRSY---AERQA------FNSVV 1164

Query: 603  QAVSRDILAEGMMNATKA--------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTS 653
            Q  + D++   M+  +K            ++  +HDE+V             ++   M+ 
Sbjct: 1165 QGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSH 1224

Query: 654  NPSWAKGLPLKA 665
                   +PL  
Sbjct: 1225 AMQLL--VPLSV 1234


>gi|313621758|gb|EFR92494.1| DNA polymerase [Listeria innocua FSL J1-023]
          Length = 155

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 14/161 (8%)

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR-------DVG 574
             + +  +  I   ++           +        L + LPSGR+L Y          G
Sbjct: 1   RGVEKHAKLAISTRESQ------KYKGLTFYYKAGILFIKLPSGRNLAYFRAKLVPGKYG 54

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
           +   Y   T +   ++YTYGGKL ENIVQA++RD LA  +     AG   V+ VHDE + 
Sbjct: 55  HQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAVSLRRIEDAGISTVMHVHDEAIT 114

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           E P+++  +   L  ++    SWA GLPL+ +G+ S  Y K
Sbjct: 115 EVPESE-SSVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 154


>gi|156552095|ref|XP_001605062.1| PREDICTED: similar to Mus308 [Nasonia vitripennis]
          Length = 2242

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/528 (13%), Positives = 152/528 (28%), Gaps = 66/528 (12%)

Query: 21   ICKYAEDVCVILFAFGFDDHPVELWD--------CVHDPVMPQVLKEALENTDVTIVAHN 72
               Y  D  +      +    V                  M   L++ L +  VT+   N
Sbjct: 1742 AYVY-GDRKLCGIVISWGTKAVYYMPFGITTETKITIKERM-SFLRDILSDASVTLRCFN 1799

Query: 73   SYFE-RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
            +  +   +   C  ++ P   ++            +  K      +L++Q    G + IA
Sbjct: 1800 AK-DVYKMFYICCEVE-PNCSFLDPKAGDWLMNAETCNKG---YTELAAQYFPRGID-IA 1853

Query: 132  RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLD 189
              C+      +  R       A  L   Y    V    + F  +        E     + 
Sbjct: 1854 NACENNYGTYVLTR--DARAGAKALLAWYVANAVVEAVKEFSPISLSAYKDIEMPTILIL 1911

Query: 190  QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
              +  RG+ ++V     L  ++  +  ++++E         +     E  +     + G 
Sbjct: 1912 ANMELRGFGINVESLQELATVIKNDLGRIEEEAFRAAGRKFNFYSSKEVSQVLGLNKRGR 1971

Query: 250  HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
               +          ++ K        +     + +      +  L++    + R+ G   
Sbjct: 1972 ACTNK---------NALKSCENPISNLVTLWRKLTTVQTKIVFPLLQLERKNNRIHGNCI 2022

Query: 310  FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
                + TGR S      Q +PR  +S                     +      VR   +
Sbjct: 2023 TY--TVTGRVSMHEPNLQTIPRDFKSD--------------------ISGCILSVRMAFV 2060

Query: 370  ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
             + G  ++ AD   +E R+LA  + +    K      D++ +  AR       QV  D R
Sbjct: 2061 PASGNIMLSADFCQLELRILAHFSQDPVLCKLLHGKGDIFKSIAARLNKTTEEQVDDDMR 2120

Query: 430  AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
               K +  A+ Y  GAK+  +      L+           +    ++    +   + E  
Sbjct: 2121 QRAKQLCYAMIYGMGAKSLAET-----LSATESEAKDYLEAFMGTYKGIRVWLTGVCEQA 2175

Query: 490  PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                 R+    ++   + +    E+   N K 
Sbjct: 2176 RVEGFVSTIANR---------RRILPGINSKISAVKSQAERQAVNTKV 2214


>gi|158285510|ref|XP_564726.3| AGAP007533-PA [Anopheles gambiae str. PEST]
 gi|157020027|gb|EAL41770.3| AGAP007533-PA [Anopheles gambiae str. PEST]
          Length = 1997

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 88/709 (12%), Positives = 179/709 (25%), Gaps = 131/709 (18%)

Query: 9    ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVHDPVMPQV------LKE 59
            ETR   +        + +++ +   A    D     V   D   +            ++ 
Sbjct: 1370 ETRRTNNNASRS-FTFDDNLYLAGMAIKLQDDTTSTVYYIDLQEEATAIDRAEKVRFIRT 1428

Query: 60   ALENTDVTIVAHNSYFERTVLKA------CFNLDIPIHRWICTLVLARSN---GLPSALK 110
                  +TI   +   +  ++            ++ +  +    V             L 
Sbjct: 1429 LFGREQLTITMLDVKDQLKIVYRSGLIPVAEGDEVLVATFQDPRVACWLLQTDAETLTLD 1488

Query: 111  AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            A+ E     + K  E +    R+            +        R   E C     +   
Sbjct: 1489 AMIERH-CPTLKQAELRWTGQRWVTP-KWTGHGLNHHSPFDAKQRTAVE-CLLVSELMAC 1545

Query: 171  IFKR---------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
            + +R             +S+E  +     +    G+ VD      L   +   R ++ +E
Sbjct: 1546 VSQRLATANGDSLSICFTSREMPVQLALASAEVIGFPVDRERLAALIAQLKACRDRIAEE 1605

Query: 222  LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
               L             +   L L  G   +     T ++VL   +   P A  V   R 
Sbjct: 1606 ARKLNGNQRLDFGSSRAVAKALRLAGG--NDRKQCRTVRQVLERLES--PLAALVIAYRK 1661

Query: 282  RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              S      +  L   +   G  R   +    + TGR +      Q + +        D 
Sbjct: 1662 IESNLTRT-IEPLYRIVRP-GSNRVHGRSFCFTSTGRITMHEPNLQTVVK--------DF 1711

Query: 342  IITHLPTSITSDPDPLQIISDCVRSCVI---ASEGKKLVVADLAGIEARVLAWMAGEQWK 398
             +    T                RS         G  L+ AD   +E  +L  ++ +   
Sbjct: 1712 TVPARLTEGGGGGGDAPPPLFSCRSTFACSDPDGGTVLLSADFCQLELSILTHLSQDPQL 1771

Query: 399  LKA-----------FETGEDLYVTTYARSFNVAPA-QVTKDQRAIGKVMELALGYQGGAK 446
            + A            E   D++    AR  +      V+ + R   K +   + Y  G +
Sbjct: 1772 MAALGGGGNEAPGRTEARSDVFRALAARWNHYERESDVSDELRNRTKAIVYGVIYGMGVR 1831

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            A         L L+  A           + +   +   +     +    +   G      
Sbjct: 1832 AMAAE-----LQLDEDAARTLMEQFHATYPEIRRYIERVVRLTRQLGYIETLTGR----- 1881

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                R+    ++        A E++    +A+    +     +                 
Sbjct: 1882 ----RRHLPAITS-----ENARERSEAERQAVCTTIQGSAADIL---------------- 1916

Query: 567  SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
                                + R      K                            VL
Sbjct: 1917 -----------------KNAIVRMRRNLRKYRNV----------------LELERIRFVL 1943

Query: 627  TVHDEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674
             +HDE++ E P +     + +    M +       +PL+ +      + 
Sbjct: 1944 HMHDELIYEVPRSQLHKIAKILKSSMENCAK--LSVPLRVKLKAGPSWG 1990


>gi|159486913|ref|XP_001701481.1| DNA polymerase theta [Chlamydomonas reinhardtii]
 gi|158271663|gb|EDO97478.1| DNA polymerase theta [Chlamydomonas reinhardtii]
          Length = 2508

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/485 (13%), Positives = 121/485 (24%), Gaps = 98/485 (20%)

Query: 140  ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----------RLEPLSSKEQELWYLD 189
              +  R  P  +               + R I+            L PL   E  L  + 
Sbjct: 1955 AGVVVRQLPTRQAD-------ACRRAAMVRRIYIDKLPRLQSEGLLRPLLELEMPLVRIL 2007

Query: 190  QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
              +   G  +   +       ++    +L  +   L  G+       + +   LF    L
Sbjct: 2008 ARMEGEGIALAPQVLKDQRGPLEARLRQLAAKAH-LAAGMTFDLNSPKDVSEVLFQHLNL 2066

Query: 250  HLE--------DLTETT--CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE--- 296
                           +T              P    + + R    +     + TL     
Sbjct: 2067 PPPPCAFSNQNQRHPSTKKEVLEELEESTHHPIIRLLLDYR-TLHKLLTGFVETLYHTAK 2125

Query: 297  -----------------------------AMNSDG--------RLRGTLQFLGASRTGRW 319
                                         A+   G        RL GT     ++ TGR 
Sbjct: 2126 GQWQRQQHELERCQGQGQQPQRGGAATGGAVKPGGPGPVPDVIRLCGT-WLHTSTATGRL 2184

Query: 320  SGCVFPPQNLPRP---------------------SRSHEELDQIITHLPTSITSDPDPLQ 358
            +      Q +PRP                          EL  +          +     
Sbjct: 2185 AMDEPNLQTVPRPVEYTFMASQLSQASAGTPPAAGADGAELKLLPGEERGGGAGEGGRSV 2244

Query: 359  IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG-EDLYVTTYARSF 417
             +   +RS  +A  G  ++ AD   IE R++A  + +           +D ++   A   
Sbjct: 2245 TLHFNLRSAFVAPPGYMVLAADYKQIELRLMAHFSSDAALCALLRNPAQDPFILLAAEWK 2304

Query: 418  NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
             V   QVT + R   K +   + Y  G     +      L ++       +++       
Sbjct: 2305 KVPVEQVTPEVRVQAKRLAYGMLYGMGTNTLAQE-----LGVSVAEAGELSDNFRRAIPS 2359

Query: 478  AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
             + + R + E           +G       +   +          +  +    T+  G A
Sbjct: 2360 VDRWMREVVEAVRSCGYTTTLMGRR-RYYSRINERASKDARSARAQAERQAVNTVCQGSA 2418

Query: 538  IIARK 542
                K
Sbjct: 2419 ADLIK 2423


>gi|256081122|ref|XP_002576822.1| DNA polymerase I [Schistosoma mansoni]
 gi|238662107|emb|CAZ33059.1| DNA polymerase I, putative [Schistosoma mansoni]
          Length = 787

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/549 (12%), Positives = 144/549 (26%), Gaps = 117/549 (21%)

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
                L   +   G+ +++   +  +  +     +L+     L           +++   
Sbjct: 290 LPCQSLLARMESNGFILNLDDLNKCHDSLLKACKQLESVAYRLAGQP-FPMDSPKEISKV 348

Query: 243 LFLETGLHLED-------------------------LTETTCQRVLSSNKKLTPQAIQVF 277
           LF    L                             L + T   +LS    L P    + 
Sbjct: 349 LFKWLHLPQITDPNDLIMNRKRSQSYLLNGRNRSNHLPKATNT-LLSKLTNLHPLPAVIM 407

Query: 278 NNRMR---ASRSAVLKLNT---LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             R       +     ++T   +  +   D  LR +  +   + TGR    +   Q++P+
Sbjct: 408 EWRHINGILEKIFNSLVSTCRLIYISSTGDQPLRISPTYDVYTATGRIISIMPNLQSVPK 467

Query: 332 P-------------SRSHEELDQIITHLPTSITSDPDPLQIISDCVRS--CVIASEGKKL 376
                         +  +  L+       +        L    + +R      A  G  L
Sbjct: 468 DIVIDWSKLHYKSSTVDNNCLNNNSEKWTSPFDQILSELPKSIETIRPRCAFHAPVGGLL 527

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD-QRAIGKVM 435
           +  D   +E R+LA+ + +   LK     E    T  A   N+  +    D QR   K +
Sbjct: 528 ISGDFCQLELRLLAYFSKDVELLKLLSVVEHASQTLAAHWLNIPHSNQVTDVQRQQAKQL 587

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
             A+                                                     A +
Sbjct: 588 CYAIL--------------------------------------------YGMGSQTLASQ 603

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                   +++  ++   +  V +       A       G+         +  V   K  
Sbjct: 604 LNVSQQNAQKLIDSFLNTYPGVQKFIKT---AVLTAHREGQIKTLNGHIRLLPVLNSKTV 660

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
            +              ++  N S               G +    I+Q  + +I    M+
Sbjct: 661 FDSGTPY---------ELNCNWSKKYDLRNHFAVIKAEG-QAVNIIIQGSASEIAKIAML 710

Query: 616 NATKA--------GYDIVLTVHDEIVCET-PDTDEFNA-SMLYHLMTSNPSWAK-GLPLK 664
              +A           +VL  HDE++ E  P++       ++   M++        +PL 
Sbjct: 711 AVDEAIHSSNIPGNAHLVLHEHDELIYEVFPESSAKQFGELIRQTMSNTSKHCNIDVPLP 770

Query: 665 AEGYESKRY 673
            +      +
Sbjct: 771 VKLRIGNNW 779


>gi|157875680|ref|XP_001686222.1| mitochondrial DNA polymerase I protein A [Leishmania major strain
           Friedlin]
 gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania major]
 gi|68129296|emb|CAJ07836.1| putative mitochondrial DNA polymerase I protein A [Leishmania major
           strain Friedlin]
          Length = 931

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 95/372 (25%), Gaps = 103/372 (27%)

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            L       G + TGR S      QNLPR                 +     +  +    
Sbjct: 631 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRNGI----------TAAVAGNDAEEDGEEDLL 679

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R C +A++G  L+  D   IE RVLA + G+   ++A  T  D++       F   P 
Sbjct: 680 GFRRCFVATDGCVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP- 738

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            V+ ++R + K +   L                                           
Sbjct: 739 -VSTEERRLAKRVVFGLL------------------------------------------ 755

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                     A            +          +      + +                
Sbjct: 756 --YGAGPKTLATHMGVTVDRALHITSLLANAFPGIDAYQRRVIEEART------------ 801

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                         N  +   SGR     D+ +      +      R+         ++V
Sbjct: 802 --------------NGFVRTLSGRLRYLPDIRSTVLSRRSY---AERQA------FNSVV 838

Query: 603 QAVSRDILAEGMMNATKA--------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTS 653
           Q  + D++   M+  +K            ++  +HDE+V             ++   M+ 
Sbjct: 839 QGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSH 898

Query: 654 NPSWAKGLPLKA 665
                  +PL  
Sbjct: 899 AMQLL--VPLSV 908


>gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511]
 gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511]
          Length = 730

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 83/620 (13%), Positives = 151/620 (24%), Gaps = 191/620 (30%)

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW-----------YLDQTIND 194
           N         +   Y  GD      I   L  + +K Q++W                I  
Sbjct: 148 NFNYDWIPLEILHPYASGDTDCCLRIHNVLTEIIAKNQKMWFQFANFYPSAIVALARIES 207

Query: 195 RGYCVDVALAHTLNQIVD-------------VERTKLDQELESLTYGLV----------- 230
            G          +N+                 E ++L+++   L    V           
Sbjct: 208 NGIYAQTDYMEDINEKYTEEEERLVEEMRKIAEVSELEEQHMELYERGVEEMAVPPAKRD 267

Query: 231 ---------------SSSRCLEKLKTWLFLETGLHLE------------------DLT-- 255
                           +          L+   G+ L                    LT  
Sbjct: 268 DDIAKLRNKYKNKLKFNPNSATDKGKVLYQIMGITLPYDKEHIKESAFDVGKPENKLTWE 327

Query: 256 -ETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQF 310
              T ++ L+      P       +                 L+  + N DGR+ G+   
Sbjct: 328 DYKTDKKALNYIVDHFPDQKVFASLLLEHSLVKTRKNNFTAKLLNFISNKDGRVHGSFN- 386

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV-I 369
              + T R S      Q LP  + + +  D                       ++     
Sbjct: 387 ATGTETTRLSSNNPNMQQLPAKTSNPKRFDYQY-------------------PIKRMFQT 427

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A E   L+  D + +E R+LA  AG++   +AF  G DL+  T +  + +   +V  +  
Sbjct: 428 AFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWGMPVDKVPAE-- 485

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
                                                       +   A NF     E  
Sbjct: 486 ------------------------------------------FRKKAKAVNFGIAYGETP 503

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +        E + + +      +      + +   + + +G     +  R +   
Sbjct: 504 FSFAPKHDMSVEEAEDIFQRYFANKPNIKTF---IDETHREALRDGFVDTLQGHRRLIRD 560

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
              KDK      L                                 K     +Q      
Sbjct: 561 AFSKDKQIQNGAL--------------------------------RKSVNTKIQGTGAYC 588

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP------S 656
               ++              +VLTVHD IV + P  +    + +   +M + P       
Sbjct: 589 TNMSLIYIDQYIQDNNMKSKLVLTVHDSIVVDCPPEEIEIMARVCKTIMENLPIDFLSIE 648

Query: 657 WAKG---LPLKAEGYESKRY 673
           W       P++A+      Y
Sbjct: 649 WKGEKTKYPIEADIEIGTNY 668


>gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148]
          Length = 640

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 93/593 (15%), Positives = 156/593 (26%), Gaps = 159/593 (26%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVELWDCVH-DPVMPQVLKEAL 61
           L  D ET               E   + L      D   + L DC   D      L+   
Sbjct: 21  LCFDTETLQLQP----------ERGKLRLLQLGARDRDTIVLIDCFQLDKGDWADLRWFF 70

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSN-----GLPSALKAVGEA 115
              D   +AHN+ F+   L+     +I    W  C+++ +R            L +V + 
Sbjct: 71  STPDRFWLAHNAVFDLGWLQEH---NIYPAGWVRCSMLASRLLTNGLPNSKHGLDSVVKR 127

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI---- 171
                                +       +      +      EY   DV    E+    
Sbjct: 128 YL-------------------KKELSKEQQRSDWSGDLSEEQLEYAANDVAALMELDPIL 168

Query: 172 --------------------------FKRLEPLSSKEQEL------WYLDQTINDRGYCV 199
                                     ++   P +++  +       + + Q   D    +
Sbjct: 169 EHRISRDRLGPAFKLECRALPAMAQMWRTGLPWNAENLQQRKVDYEYDITQLKQDFLMLL 228

Query: 200 DVALAHTLN---QIVDVER-----------------TKLDQELESLTYGLVSSSRC---- 235
           D AL        +  +                     K   ELESL      ++R     
Sbjct: 229 DKALPEEHKLPRERDEQRISYLKDKVTEMGHYDKAYEKWYAELESLENSTTFNTRSKDEG 288

Query: 236 ----------------LEKLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVF 277
                            ++L   L +  G      +   +  ++ L S            
Sbjct: 289 SIRLGTKKYAGFNINSPKQLVEKLTVILGEPPRDANGKPSASRQALRSYAADHEVIQIYL 348

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
             +    R     + ++ E M+  G +R +   LGA   GR S      Q +PR      
Sbjct: 349 EWKRCEKRRQ--MIESIQEKMDGTGFVRASYMQLGAES-GRMSCIKPNNQQIPRD----- 400

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                      RSCV A EG  LV AD   +E R+ A +A ++ 
Sbjct: 401 ------------------------KQFRSCVEAPEGWLLVDADFGQMELRLAAAVADDER 436

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            + AF+ GED +  T                R   K     L Y  GA   +  A   G+
Sbjct: 437 MIAAFQAGEDPHTVTAKAI---------GCDRQTAKSANFGLLYGSGATGLRNYAGGMGI 487

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
            +         N     ++    + R   +   E                + +
Sbjct: 488 TMTQERAADIRNEWLGVFQGVAKWQRDNAKEADETQDYKWAATRVPISGMRRY 540


>gi|66732781|gb|AAY53372.1| gp69 [Listeria phage P100]
          Length = 702

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 83/620 (13%), Positives = 150/620 (24%), Gaps = 191/620 (30%)

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW-----------YLDQTIND 194
           N         +   Y  GD      I   L  + +K Q++W                I  
Sbjct: 120 NFNYDWIPLEILHPYASGDTDCCLRIHNVLTEIIAKNQKMWFQFANFYPSAIVALARIES 179

Query: 195 RGYCVDVALAHTLNQIVD-------------VERTKLDQELESLTYGLV----------- 230
            G          +N+                 E ++L+++   L    V           
Sbjct: 180 NGIYAQTDYMEDINEKYTEEEERLVEEMRKIAEVSELEEQHMELYERGVEEMAIPPAKRD 239

Query: 231 ---------------SSSRCLEKLKTWLFLETGLHLE------------------DLT-- 255
                           +          L+   G+ L                    LT  
Sbjct: 240 KDIAKLRDKYKKKLKFNPNSATDKGKVLYQIMGITLPYDKEHIKESAFDVGKPENKLTWE 299

Query: 256 -ETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVLKLNTLVEAM-NSDGRLRGTLQF 310
              T ++ L+      P       +                 L+  + N DGR+ G+   
Sbjct: 300 DYKTDKKALNYIVDHFPDQKAFASLLLEHSLVKTRKNNFTAKLLNFISNKDGRVHGSFN- 358

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV-I 369
              + T R S      Q LP  +   +  D                       ++     
Sbjct: 359 ATGTETTRLSSNNPNMQQLPAKTSDPKRFDYQY-------------------PIKRMFQT 399

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A E   L+  D + +E R+LA  AG++   +AF  G DL+  T +  + +   +V  +  
Sbjct: 400 AFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWGMPVDKVPAE-- 457

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
                                                       +   A NF     E  
Sbjct: 458 ------------------------------------------FRKKAKAVNFGIAYGETP 475

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A +        E + + +      +      + +   + + +G     +  R +   
Sbjct: 476 FSFAPKHDMSVEEAEDIFQRYFANKPNIKTF---IDETHREALRDGFVDTLQGHRRLIRD 532

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
              KDK      L                                 K     +Q      
Sbjct: 533 AFSKDKQIQNGAL--------------------------------RKSVNTKIQGTGAYC 560

Query: 610 LAEGMMNAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNP------S 656
               ++              +VLTVHD IV + P  +    + +   +M + P       
Sbjct: 561 TNMSLIYIDQYIQDNNMKSKLVLTVHDSIVVDCPPEEVEIMARVCKTIMENLPIDFLSIE 620

Query: 657 WAKG---LPLKAEGYESKRY 673
           W       P++A+      Y
Sbjct: 621 WKGEKTKYPIEADIEIGTNY 640


>gi|322494966|emb|CBZ30269.1| mitochondrial DNA polymerase I protein A,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 930

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 95/372 (25%), Gaps = 103/372 (27%)

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            L       G + TGR S      QNLPR                 +     +       
Sbjct: 630 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRNGI----------TAAVAGNDAEEDGDDDLL 678

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R C +A+ G  L+  D   IE RVLA + G+   ++A  T  D++       F   P 
Sbjct: 679 GFRRCFVAAGGCVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKKKP- 737

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            V+ ++R++ K +   + Y                                         
Sbjct: 738 -VSTEERSLAKRVVFGVLY----------------------------------------- 755

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                     A            +          +      + +                
Sbjct: 756 ---GAGPKTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVVEEAR------------- 799

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                         N  +   SGR     D+ +      +      R+         ++V
Sbjct: 800 -------------ANGFVRTLSGRLRYLPDIRSTVLSRRSY---AERQA------FNSVV 837

Query: 603 QAVSRDILAEGMMNATKA--------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTS 653
           Q  + D++   M+  +K            ++  +HDE+V             ++   M+ 
Sbjct: 838 QGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSH 897

Query: 654 NPSWAKGLPLKA 665
                  +PL  
Sbjct: 898 AMQLL--VPLSV 907


>gi|109521836|ref|YP_655732.1| gp52 [Mycobacterium phage Qyrzula]
 gi|91980780|gb|ABE67498.1| gp52 [Mycobacterium phage Qyrzula]
          Length = 600

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 101/714 (14%), Positives = 183/714 (25%), Gaps = 204/714 (28%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVEL---------WDCVHDPVMPQVLKEALENTD 65
           D+   G+ +   +  +      +      +         W   H      V   A     
Sbjct: 37  DIETPGLDR---NFEINCLTAAWIGWDGTIESVLLDPIRWP-AHRQAARDVFARAC---- 88

Query: 66  VTIVAHNSYFERTVLKACFNLDI-PIHRWICTLVLARSNGLP--------SALKAVGEAL 116
             +V HN+ F+   L     +D   I +   T++LAR               L+A    L
Sbjct: 89  -KLVFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHL 147

Query: 117 --------KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR---------------EA 153
                    +       G + I    +    +    R                       
Sbjct: 148 LGLVDVAGGMERAFKAAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVE 207

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
           W     + +   T   E       +   ++   ++    + RG  VD        +    
Sbjct: 208 WTTSHPFAEFGATTEAE----ALEVLEVQEIAHWVMLQRSARGLAVDRDYLDEYREREHD 263

Query: 214 ERTKLDQEL--ESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTETTCQRVLSSNKKLT 270
           +R +    L    L  G       ++ L+    L +          +  +  L +     
Sbjct: 264 KRLEHAAFLAQYDLEGGTGKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETLDHPV 323

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
             A +        S   +  L  +       GR    +  LGAS TGR S      Q  P
Sbjct: 324 AAAQRAL----AVSDKVLGYLEKVARQAAVTGRCHPQVAILGASATGRMSYGSPELQQFP 379

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           + +R                                 +I  +G+ L   D A IE   +A
Sbjct: 380 KDARP--------------------------------IIVDDGQGLTSVDWAQIEPVTMA 407

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            MAG++  L  F   +        R+  +         R + KV+ LA  Y  G      
Sbjct: 408 LMAGDREFLAPFFEKDADLYEPIMRACGID--------RPMAKVILLATMYGQG------ 453

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                                                     A        +  ++++  
Sbjct: 454 --------------------------------------ARSMARRIGHTEESAAQIRRQM 475

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
                   +   ++                                +  ++   GR L  
Sbjct: 476 LAAMPASRDFMAKVESIAIT--------------------------HGRIVTGGGRILPV 509

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTV-- 628
              G+ R                       I Q  + D+LA  ++   + G    + +  
Sbjct: 510 DQQGSYR-------------------AVNYICQGSAYDVLAHTIVRLDEVGLSGHVQLAM 550

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPS----WAK--GLPLKAE-GYESKRYRK 675
           HDE+V +T       A+ + H+M + P     WAK     L+ +      R+ K
Sbjct: 551 HDELVVDT-----DVAAEVEHIMMTPPEFLTRWAKRDDFMLRTDRADMGHRWAK 599


>gi|326919514|ref|XP_003206025.1| PREDICTED: HAUS augmin-like complex subunit 3-like [Meleagris
            gallopavo]
          Length = 1077

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 112/407 (27%), Gaps = 108/407 (26%)

Query: 283  ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
              +   +    ++   +              + TGR S      Q + +     ++   I
Sbjct: 756  LQKLYTI----MMGLAHDLQGFICPTWNQTGTVTGRLSSKHPNIQGISKHPVRIKKKQYI 811

Query: 343  ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                   +T  P          R+  ++ +G   + AD + IE R+LA ++ E   LK F
Sbjct: 812  KGKEEEIVTISP----------RALFVSKKGYTFLAADFSQIELRILADLSAEPELLKLF 861

Query: 403  ETGE--DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            +  E  D++ +  ++   +   QV +  R   K +                         
Sbjct: 862  QEPETADIFTSLASQWKGIPSEQVKQTDREQAKRIV------------------------ 897

Query: 461  TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                +           A              +++ QK+ +V E 
Sbjct: 898  --------------------YSVVYGAGKERLAECLGITPLEASCFIESFMQKYKKVHEF 937

Query: 521  WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
                 +   Q    G  +                          GR  +  ++ +    L
Sbjct: 938  ---TKKTIGQCQNKGYVVSI-----------------------MGRKRLLANIHSQDYKL 971

Query: 581  NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-------TKAGYDIVLTVHDEIV 633
             T   Q  R+          +VQ  + D+    M+               ++  +HDE++
Sbjct: 972  RT---QAERQA------VNFVVQGSAADLCKMAMVEIFTSVVVSPTLTARLIAQIHDELL 1022

Query: 634  CETPDTDEFNA-SMLYHLMT-----SNPSWAKGLPLKAEGYESKRYR 674
             E  D+      +++   M      +       +PLK      K + 
Sbjct: 1023 FEVEDSQIQEFSALVKRTMESLQQTTALEVPLKVPLKVLLTTGKSWG 1069


>gi|291165127|gb|ADD81154.1| gp49 [Rhodococcus phage ReqiPine5]
          Length = 600

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 103/688 (14%), Positives = 187/688 (27%), Gaps = 188/688 (27%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPV----ELWDCVHDPVMPQVLKEALENTDVTIVA 70
           D+   GI        +    F +          L D    P      K   +  +   V 
Sbjct: 40  DIETKGIDI----FTIRCITFSWHGSDGRTHGILLDMGRRPEDLAEAKRIAQRAEHL-VF 94

Query: 71  HNSYFERTVLKACFNL--DIPIHRWICTLVLARSNGL----PSALKAVGEALKLSSQKME 124
           HNS F+   L   F +     + R   T+VL+R        P  L+A+   +++S +  +
Sbjct: 95  HNSPFDVVPLV-HFGVMGREEVFRVWDTIVLSRMAFPDVMVPKKLEAMAVKMRVSDELPD 153

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI--------FKRLE 176
             K +I             D    +       +      D  VT  +         ++L 
Sbjct: 154 GLKMMIKASGLKSK-----DGWYAHGDIDRPAYRHGAIADTVVTLRLLPVLIDAIHRKLT 208

Query: 177 PLSSKEQ-----ELWYLDQTIND-----------RGYCVDVALAHTLNQIVDVERTKLDQ 220
                ++     +                     RG  VD+   HT    V  +  + + 
Sbjct: 209 DHPFTDRGLQTTDEAQALVDREMLVNRVMLWRSARGIRVDLDYMHTYRDSVADKVARAEL 268

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVFNN 279
           EL++      + ++ + KL     L          +  + +  +       P A     +
Sbjct: 269 ELKNYGVDPGNGAQLVAKLDEVGGLPENWPRTATGKLASNKDAMEKL-GDHPLA---LAH 324

Query: 280 RMRASRSAV-LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           R+ A  + +   L+ +       GR   ++  LGAS TGR S    P Q           
Sbjct: 325 RIYADETKIGQYLDAVASRAEVTGRCHPSVAILGASATGRTSYSDPPLQQF--------- 375

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                 S   R  ++  +G+ L+  D + IE  V+A MAG+   
Sbjct: 376 ----------------------SADARPVLV-DDGQGLMSVDWSAIEPVVVANMAGD--- 409

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
                                                E    +  GA  ++ +    G++
Sbjct: 410 ------------------------------------QEFLAPFVAGADLYEPIQRAAGID 433

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                          +            E   + A +         ++++       +V 
Sbjct: 434 --------------RKRAKVVLLGTLYGEGKGKMAADLKCSYEQAVQIQRGMFSAMPKVE 479

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                +     Q                            I++   GR L         +
Sbjct: 480 RFLETVKSVAAQ--------------------------FGIIVTADGRILDVPKFNGEVA 513

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCET 636
                            K T  I Q  +  + A+ ++    AG   +I L +HDE V   
Sbjct: 514 AY---------------KATNYITQGTAYSVAADTIVRLHDAGLSDEIHLFMHDEFVVS- 557

Query: 637 PDTDEFNASMLYHLMTSNPS----WAKG 660
                  A  +  +M + P     W KG
Sbjct: 558 ----RDAAPDVEAIMQTPPEFMVRWTKG 581


>gi|60117328|gb|AAX14432.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 276

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 91/308 (29%), Gaps = 57/308 (18%)

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                ++++       +L        + +       E    F             +   +
Sbjct: 1   SVDDLMIMSY------SLDTGKHDHSIPNIVAHNLSENAEIFSAKTLIAIHEKLKQRLFQ 54

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           E    F  Y + D                  + L  +   +   G  +++     L+   
Sbjct: 55  EKL--FTIYERFD------------------KPLMKVIFDMEKNGILLNIQKLQELSDKF 94

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-----TCQRVLSSN 266
                 L+ E+ +L      +    ++L   LF + GL+ +  ++      T   VL + 
Sbjct: 95  QQVIAVLEDEIYNLAG-ERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEAL 153

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           ++   +      N    S+      + L++ ++       T     A+ TGR S      
Sbjct: 154 EEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNL 213

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           QN+P  S                            + +R   IA +G K++ AD + IE 
Sbjct: 214 QNIPIRSEEG-------------------------NLIRQAFIAPKGHKIISADYSQIEL 248

Query: 387 RVLAWMAG 394
           + L     
Sbjct: 249 KPLGTRCQ 256


>gi|60117346|gb|AAX14438.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis]
          Length = 193

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 76/214 (35%), Gaps = 31/214 (14%)

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
             +   +   G  +++     L+         L+ E+ +L      +    ++L   LF 
Sbjct: 1   MKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAG-ERFNIASPKQLSDVLFN 59

Query: 246 ETGLHLEDLTET-----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
           + GL+ +  ++      T   VL + ++   +      N    S+      + L++ ++ 
Sbjct: 60  KMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDP 119

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                 T     A+ TGR S      QN+P  S                           
Sbjct: 120 LDGRIHTSFSTTATATGRLSSSNPNLQNIPIRSEEG------------------------ 155

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
            + +R   IA +G K++ AD + IE R+LA +A 
Sbjct: 156 -NLIRQAFIAPKGHKIISADYSQIELRLLAHVAN 188


>gi|48429404|gb|AAT42470.1| PolA [Escherichia coli B]
          Length = 179

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 61/193 (31%), Gaps = 28/193 (14%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D +      ++LK  LE+     V  N  ++R +L     +++       T++ +     
Sbjct: 1   DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIA-FDTMLESYILNS 58

Query: 106 ---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                 + ++ E              L  +    E            ++ A    G Y  
Sbjct: 59  VAGRHDMDSLAER------------WLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAA 106

Query: 163 GDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLNQIV 211
            D  VT ++  ++ P   K              L  +   I   G  +D  + H  ++ +
Sbjct: 107 EDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEEL 166

Query: 212 DVERTKLDQELES 224
            +   +L+++   
Sbjct: 167 TLRLAELEKKAHE 179


>gi|32442301|gb|AAP82221.1| DNA polymerase [Podovirus GOM]
          Length = 399

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 122/440 (27%), Gaps = 74/440 (16%)

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            TLVL+R        +      K    K+     L A   + +  +  Y + +    +  
Sbjct: 1   DTLVLSRLVYPNRRERDAIHRWKYLDTKLYGSHSLKAWGQRLDFAKGDYGQTEDAWEKLS 60

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKE------QELWYLDQTINDRGYCVDVALAHTLN 208
               EYC  DV +T +++  L+P           QEL  +       G   DV  A    
Sbjct: 61  EAMVEYCIQDVELTHKLYGILKPKLQSRKALSLEQELTVICNRQERHGIPFDVDRAQLFY 120

Query: 209 QIVDVERTKLDQELESLTYGL--------------------VSSSRCLEKLKTWLFLETG 248
             +   R++L  EL                           V + R  + +   L     
Sbjct: 121 SDLCGRRSELQTELIDKFGWWYTGELREPKTKPSYSKLIKVVFNPRSRQHIAKRLKDFYN 180

Query: 249 LHL----EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNSD 301
                          + VLS      P+A ++    +  ++       +    ++    +
Sbjct: 181 WKPTEFTPSGEPKVDESVLSKL--EYPEA-KLLTEYLLVNKRISQLAEEDQAWLKLER-N 236

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+ G +  +G+  T R S        +P  S                            
Sbjct: 237 GRIHGRVNTMGS-VTSRCSHSHPNLAQIPSVSAP------------------------YG 271

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    A EG + +  D++G+E R LA        +  F+ G+            V  
Sbjct: 272 KECRELFCAPEGFRFLGVDISGLELRCLAHY------MALFDNGDYGKKLLEDDIHTVNQ 325

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                  R   K    A  Y  G +      S  G +    A L K   +      A   
Sbjct: 326 NAAGLSTRNQAKTFIYAFLYGAGDEKI---GSIVGGSSEEGAKLKKRFLSQIP---ALEK 379

Query: 482 CRWMQENHPEHAIEDLFIGT 501
            R   +   +        G 
Sbjct: 380 LRNAVKKKAQKGYLKGLDGR 399


>gi|309810235|ref|ZP_07704080.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169507|gb|EFO71555.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D]
          Length = 214

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 60/224 (26%), Gaps = 44/224 (19%)

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           + +   ++L +          A NF      +    A          +     + +++ +
Sbjct: 24  MKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQ 83

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           + +       A +   E G A                            R  +  D+ N 
Sbjct: 84  IKDYMK---AAVKLAREKGYAETI-----------------------MHRRRLLPDIHNK 117

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT------KAGYDIVLTVHD 630
                       R            +Q  + DI+   M+         K    ++L +HD
Sbjct: 118 NF---NIRSFAERTAINSP------IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHD 168

Query: 631 EIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           E++ + P  +      L   +M         +PL A+      +
Sbjct: 169 ELLFDVPSEELDLIKTLVLKIMQQAAQ--LDVPLIADANWGHNW 210



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 50/153 (32%), Gaps = 11/153 (7%)

Query: 396 QWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +  L+AF+ G D++  T  + F ++   +VT   R   K +   + Y             
Sbjct: 6   KIMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGIS-----DYGLA 60

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             L ++        N+  E++   +++ +   +   E    +  +     R+      K+
Sbjct: 61  KNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHR--RRLLPDIHNKN 118

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
             +        +    +   G A    K   + 
Sbjct: 119 FNIRSF---AERTAINSPIQGSAADIIKIAMIK 148


>gi|156377033|ref|XP_001630662.1| predicted protein [Nematostella vectensis]
 gi|156217687|gb|EDO38599.1| predicted protein [Nematostella vectensis]
          Length = 425

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/458 (14%), Positives = 119/458 (25%), Gaps = 53/458 (11%)

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGK----EL 129
              L     + +         V +           L+ +      S   + EG+     L
Sbjct: 1   YKALCQGCGITVS-GECEDPKVASWLLDPGCKEKTLQHLVGQYASSKMVILEGEVPCGSL 59

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
                    +                   +  + D+ V   +    + +   E  +    
Sbjct: 60  TGSLALASQNTLSGRVRACTESVLVFSMMKKLRLDL-VEDGLDYAFQKV---EMPVMQCL 115

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             +   G+    A    L  I+  +   L+QE   L      S    + +          
Sbjct: 116 VRMELNGFGFSEAECDRLKAILQAKLRTLEQEAYRL-ANHSFSLTSPDDVAR-------- 166

Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR-ASRSAVLKLNTLVEAMNSD---GRLR 305
                       VL   K L P    +   R    + + V+      +  +      R+ 
Sbjct: 167 -----------EVLERLKSLHPLPRIILEWRRVNCALTKVVFPVQREKLFHKSLHMSRIY 215

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSR--------SHEELDQIITHLPTSITSDPDPL 357
            T Q    + TGR S      QN+PR               L                  
Sbjct: 216 PTSQTH--TTTGRVSFNEPNLQNVPRDFEIELPSVIAESPPLGTRRRENIQKPARSDHSG 273

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
              +  +R+  +   G  L+ AD + +E R++A +A +    K    G D++        
Sbjct: 274 MSCAVSMRTAFVPCAGGVLLAADYSQLELRLIAHLADDSRLRKVLNGGGDVFRMIAGSLA 333

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
            + P  V   QR   K +   + Y  GAKA  +      L L      +        +  
Sbjct: 334 GLEPGSVDDKQRQRAKQICYGIIYGIGAKALGE-----QLELGEEDASMYIEKFKSRFSG 388

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
              + +   E   +             R   A    H 
Sbjct: 389 IRRYLKSTVEQCRKTGYVTTITKR--RRYLPAVNSTHP 424


>gi|157311100|ref|YP_001469095.1| gp096 [Lactococcus phage KSY1]
 gi|108861440|gb|ABG21639.1| gp096 [Lactococcus phage KSY1]
          Length = 895

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/447 (14%), Positives = 143/447 (31%), Gaps = 95/447 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66
           D ET         G+  + E   + L  +G DD   + +    +    + +KE       
Sbjct: 22  DIETT--------GLDYFTE--KITLVQYGTDDEHQQWY---TEEPTIEDIKEL---KKR 65

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
           T+  HN  F+   +   F + +PIH    ++VL  + G   +L     +LK+++ K+   
Sbjct: 66  TLFWHNGKFDTKFIAYHFGVMLPIHG--DSMVLLHALGYSDSL-----SLKVAAAKLLGV 118

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR------------ 174
           +           H+    +         + F EY   DV  T  + +             
Sbjct: 119 ENW------DIEHDLKLSKGPDEEASKLKFF-EYGLKDVKYTYALMRLLLTGVNSQSDDP 171

Query: 175 ------------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                          + + E + +   + I   G          +++          +++
Sbjct: 172 EDSKNFNTIDDLQYNVYNNELKAYSAFRYIEMTGTP-----LGDMSKS-QDAIDGKIEDI 225

Query: 223 ESLTYGLVSSSRCLEKLKTWLF--LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           E+            +K+   L    +     ++   +  + VL+ + +            
Sbjct: 226 ENKWGFRFDWVNSSDKVGALLSLVDKRLKPGDNGKISVTKEVLTKHIQEVGDFAYDVKEV 285

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +  +  +   ++    +  DGR+         ++TGR S      Q +P+ S       
Sbjct: 286 RKLKKL-IQFFDSW-NKLGHDGRIFPQFNI--TTKTGRTSSSNPNLQQVPQDS------- 334

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                  VR+ + A +G K +  D + +E R  A+ A E   ++
Sbjct: 335 ----------------------RVRNIIAAPKGMKFIECDYSQLELRCAAYCAQEPAMME 372

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKD 427
           A++ G DL+  T+        +     
Sbjct: 373 AYKNGADLHTKTWESMNGRPFSDDHDM 399



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 56/212 (26%), Gaps = 47/212 (22%)

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           +            ++    +         +   +A+ + +  +    N   +  ++    
Sbjct: 715 FSLLYGAQSKTLRDYARTNMGIDMSQEDADEFHRAFFESYPGLVSWHNACKRFLDE---- 770

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
                                 +  +  P GR      V          ++    + +  
Sbjct: 771 ----------------------HGYIQSPLGRRRYLPTV---------YSKDWGEKESAY 799

Query: 595 GKLTENIVQAVSRDILAEGMMNA-----TKAGYDIVLTVHDEIVCETPDTDEFNAS--ML 647
            +     VQ +  DI    M            + +  T+HD I+    +    + +  ++
Sbjct: 800 RRSINTPVQGLGSDICVSAMTTILQHPEYGKTFFVHGTIHDAILVTAYEDQAEHVAYDII 859

Query: 648 YHLMTSNPSWAK-----GLPLKAEGYESKRYR 674
             +M   P   K     GL L A+   +  + 
Sbjct: 860 KKIMEHPPILDKLPTTNGLYLIADADVTDSWG 891


>gi|324103783|gb|ADY17822.1| DNA polymerase [Arsenophonus nasoniae]
 gi|324103785|gb|ADY17823.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 90/222 (40%), Positives = 128/222 (57%), Gaps = 10/222 (4%)

Query: 260 QRVLSSNKKLTPQAI---QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
              L              ++ + R+++  ++  K   L++++++DGRLRGT QF GASRT
Sbjct: 4   ASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRT 63

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGK 374
           GRW+G +F P NLPRP+   + +D+ +  L          D +Q+ S  +R C+IA +GK
Sbjct: 64  GRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQGK 123

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARSFNVAPAQVTKDQR 429
           KLV++DL+ IE R+LAW+AGE WK+KAF   ++      Y   YAR+F + P  VTK QR
Sbjct: 124 KLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFYLLPENVTKAQR 183

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
            IGKVMEL LGY GG  AF   A   GL+L+  A     N  
Sbjct: 184 QIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIP 225


>gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 288

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 87/280 (31%), Gaps = 85/280 (30%)

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           IE R++A ++G+Q  + AF  G+D++++T A  F V+  +VT +QR   K +        
Sbjct: 1   IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAIN------- 53

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       G++                                  + +        
Sbjct: 54  -------FGLIYGMS------------------------------AFGLSRQLGISRPDA 76

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           ++    + Q++  V +   ++    +                              +   
Sbjct: 77  QKYMDLYFQRYPSVQQFMTDIRAKAK--------------------------AQGYVETL 110

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA--- 620
            GR L   D+ ++ +      +   R            +Q  + DI+   M+   +    
Sbjct: 111 FGRRLYLPDINSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRH 161

Query: 621 --GYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSW 657
               ++++ VHDE+V E   +   F    +   M +   +
Sbjct: 162 DPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAAEF 201


>gi|163937889|ref|YP_001642775.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
 gi|163865744|gb|ABY46800.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4]
          Length = 359

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 115/374 (30%), Gaps = 78/374 (20%)

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QN+P  S+                             VR      EG   + AD
Sbjct: 28  SKGSNLQNIPARSKEG-------------------------ARVRGAFKPQEGWFYLAAD 62

Query: 381 LAGIEARVLAWMA----GEQWKLKAFETGEDLYVTTYARSFNVAPAQV---------TKD 427
           L+ IE R++A +     G+      F  G DLY T     FN+              T  
Sbjct: 63  LSQIEPRIMAHIMWTIYGDNSLRSIFTAGRDLYTTMAMMVFNLDEKYCVDKAYDPTGTFK 122

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            RA+ K   LA  Y           +T G+++      +        +    N  R  ++
Sbjct: 123 PRAMMKTGVLAKSYDQQVG---NFCNTMGVSIEVG--NMFYEKFDTAFPSFINMVRDKRK 177

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
              +    +   G           ++  +++E    + +   + ++        +++ V 
Sbjct: 178 FAYDKGYSETLYGRK---------RRFPQLAEWSKIVKRNERKLMDLYIERARIRKKVVK 228

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
             Y               R     ++    + +        R          +++Q    
Sbjct: 229 SRYD------------FERLDTLEELIKPMAEMRNMVGYWERAS------FNSVIQGTGA 270

Query: 608 DILAEGMMNAT----KAGYDIVLTVHDEIVCETPDTD--EFNASMLYHLMTSNPSWAKGL 661
           DIL   M+       K G+ +  ++HDEI  E P  D    N  ++  +MT +      L
Sbjct: 271 DILKLNMIRLYRECQKRGWYLNASIHDEIKVEVPRKDLTLENCDLITDIMTKSVE--LSL 328

Query: 662 PLKAEGYESKRYRK 675
           PLK++      + K
Sbjct: 329 PLKSDTVIETVWGK 342


>gi|115743049|ref|XP_001201676.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115912854|ref|XP_791257.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 361

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 109/336 (32%), Gaps = 39/336 (11%)

Query: 332 PSRSHEELDQI-ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
            S+          T L  S    P P    + C+R+     +G  ++ AD + +E R+LA
Sbjct: 49  RSKKGRMTRVGAYTPLTMSSGPTPMPGPKFAVCIRNVFCPFKGGLMLAADYSQLELRLLA 108

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
            +A ++  +    +G D++    A+  +V    VT +QR   K M   + Y  GA+A  +
Sbjct: 109 HLAKDRCLMSILNSGSDVFKQIAAKWKHVDVDSVTAEQRQQAKQMCYGMIYGIGARALGE 168

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                 L +          S   +++  +N+   + +   E        G    R   A 
Sbjct: 169 -----QLGVCEEDAAAFMESFKSQYKGMKNYLLEVVKQCREKGYVQTLTGR--RRYLPAI 221

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
              +        +  +    T   G A    K   V +         L +  P+ +    
Sbjct: 222 HHTNPGARN---QAERQAVNTTVQGSAADLVKTAMVKID------RRLAVEYPATKRSHK 272

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHD 630
                  S      R+  R  T     T                      G  +VL +HD
Sbjct: 273 HK-EEEESGTAPGRRKSRRLQTSTTGFTPP--------------------GAFLVLQLHD 311

Query: 631 EIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKA 665
           E++ E    D    +  +   M +    +  LP+K 
Sbjct: 312 ELIYEVRREDVDQVAQLIKTEMENAMKLSVRLPVKV 347


>gi|298103520|ref|YP_003714762.1| gp12 [Streptomyces phage phiSASD1]
 gi|293338461|gb|ADE43479.1| gp12 [Streptomyces phage phiSASD1]
          Length = 618

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 87/570 (15%), Positives = 161/570 (28%), Gaps = 105/570 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ---VLKEA 60
           + +D ET        CG+  YA     +  A   ++         H P   +        
Sbjct: 41  VAVDTET--------CGLKIYAWGPGFLRLAQFGNETEAWALPIEHGPEYVEAAAWALRV 92

Query: 61  LENTDVTIVAHN-SYFERTVLKACFNLDIPI--HRWICTLVLARSNGL--------PSAL 109
           L +    +  HN S F+  V      + + +   +   T +LA+             S L
Sbjct: 93  LPD----LTGHNWSGFDALVSDEHLGVPLEVTCAKVTDTQILAKLVDPRQQMEGGIGSGL 148

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR--LFGEYCKGDVTV 167
           KA        +              K           +   +       + EY   DV +
Sbjct: 149 KANSARYIDPTAPDT------QDGLKAVFKSLKLKITEGFAKIPLDHPTYLEYGLLDVIL 202

Query: 168 TREIFKRLEPLSS----------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
           T  +  RLE   +           E  +  +   +   G  +D      L   +  +  +
Sbjct: 203 TSRLRPRLEATLAKLGVPKTLAVYEHRVARICAQMVRAGLVLDEEYTTGLQSDLAYDADR 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQA 273
             +         V S     ++   L    G  L + T +      + VL +   L    
Sbjct: 263 YSEVA---LGYGVESVNSARQVSAALLD-LGETLTEKTASGALKVDKAVLMALADLDRDW 318

Query: 274 IQVFN----------NRMR-ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGC 322
             + +           R + A +      +  +E +++ GR+   +Q + A RT R S  
Sbjct: 319 KPIRSREPNVLADAVLRSKRAGKWRSAYADNFLENVDAQGRIHPNVQSMQA-RTFRMSVT 377

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               Q LP   +                             +R  ++A  G+ +V  D  
Sbjct: 378 QPAVQTLPSSDK----------------------------MIRRALLADPGEVMVSVDFQ 409

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            +E RVLA +A  +    A   GEDL+  T    F       T   R + K +     Y 
Sbjct: 410 AVELRVLAALADVKRMKAAIAAGEDLHSFTARLVFG---DGFTDKDRKVSKGIAFGKVYG 466

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
           GGA    +            A         + + +     +  +     + +      T 
Sbjct: 467 GGAATVSR-----QTGAPLGAVQRAMAKYDQVYPEVGRAAKDWRIEAFNNHMV-GISITG 520

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                   R +   ++     +       +
Sbjct: 521 HRLPLD--RDRSYAITNYL--VQSTARDCL 546



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 62/149 (41%), Gaps = 25/149 (16%)

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
           A ++ +     +     R      ++   N+++ +  +G  L                  
Sbjct: 482 AVQRAMAKYDQVYPEVGRAAKDWRIEAFNNHMVGISITGHRLPLD--------------- 526

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DIVLTVHDEIVCETPDTDEFNA 644
             R+ +Y   +T  +VQ+ +RD L + +++  +AG    + L +HDE++   P  +   A
Sbjct: 527 --RDRSYA--ITNYLVQSTARDCLGQALIHMDEAGLVPYLRLPIHDEVLASVPKAE---A 579

Query: 645 SMLYHLMTSNPSWAK-GLPLKAEGYESKR 672
             +   +    +++  G+P++A+    KR
Sbjct: 580 EEISRAIAKAMTFSLRGVPIEADAEIGKR 608


>gi|324103779|gb|ADY17820.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage]
          Length = 234

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 92/222 (41%), Positives = 128/222 (57%), Gaps = 10/222 (4%)

Query: 260 QRVLSSNKKLTPQAI---QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
              L              ++ + R+++  ++  K   L+++++ DGRLRGT QF GASRT
Sbjct: 4   ASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSVDGRLRGTKQFCGASRT 63

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGK 374
           GRW+G +F P NLPRP+   + +D+ +  L          D +Q+ S  +R C+IA +GK
Sbjct: 64  GRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQGK 123

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARSFNVAPAQVTKDQR 429
           KLV++DL+ IE R+LAW+AGE WK+KAF   ++      Y   YAR+FN+ P  VTK QR
Sbjct: 124 KLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPKNVTKAQR 183

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
            IGKVMEL LGY GG  AF   A   GLNL+  A     N  
Sbjct: 184 QIGKVMELGLGYGGGVAAFLTFALAYGLNLDELAEAALPNIP 225


>gi|48697456|ref|YP_024841.1| Pas55 [Actinoplanes phage phiAsp2]
 gi|47679674|gb|AAT36803.1| Pas55 [Actinoplanes phage phiAsp2]
          Length = 1415

 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 93/604 (15%), Positives = 175/604 (28%), Gaps = 107/604 (17%)

Query: 5    FIDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
              D ET     L       Y ED    V + A   DD PV   +      + + +   + 
Sbjct: 826  TFDLETGDAERL-------YVEDGQAYVRIGAVAHDDRPV--IELG-GSTVAEDVAARIR 875

Query: 63   NTDVTIVAHNSY-FERTVLKACFNLDIPI-------HRWICTLVLARSNGLP-------- 106
                TI  HN   F+   L     + +          R    L+ AR    P        
Sbjct: 876  -QGATITGHNIMAFDLPALVRAEAMTMDEIHDLADEGRLFDGLLAARLLDPPMARDKGVD 934

Query: 107  ----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK-PNHREAWRLFGEYC 161
                  L  +  +  L  +  +  K L  ++        +   +  P   E  RLF  Y 
Sbjct: 935  ATRKYDLGTLAVSYGLGEKYTDLSKPLAKKYGGDWGQIPVDTDDPDPERAEDARLFRTYM 994

Query: 162  KGDVTVTREIFKR--------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
              D  ++R +  R        +    ++E  +  L   I   G+ VD  L       VD 
Sbjct: 995  VQDAELSRRLHARLLEELGGTVPEYLTREHRVAALAAQIRHNGFLVDQPLLTERVAEVDQ 1054

Query: 214  ERTKLDQELESLTYGLVSSSRCLEKLK----------------TWLFLETGLHLEDLTET 257
             + +    L       +++++ +                                     
Sbjct: 1055 RKAESLAWLAEHAGVPLANAKGVAYKSPLASTGGKEALEAALRAAGATSFWRTPNSGQFD 1114

Query: 258  TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK--LNTLVEAMNSDGRLRGTLQFLGASR 315
            T    +    +      +V        R    +    TL++ M+ DGR+   + F  A+ 
Sbjct: 1115 TSGEHMKHLAREYHHLPKVREIAKHVFRIVGARSVYQTLMDNMSPDGRVHPKIGFDQAT- 1173

Query: 316  TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
             GRWS        L +    H E                          R+ ++   G+ 
Sbjct: 1174 -GRWSVTRPGLTVLGKRGGRHVE--------------------------RAVLLPDPGEV 1206

Query: 376  LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
            L+ ADL+ ++ R +A ++ +   ++  +  +D +       F  A      D+R   K +
Sbjct: 1207 LMSADLSQVDMRAVAGLSQDLAYIEMLKK-DDPHAEIAKELFGTA------DRREEAKAI 1259

Query: 436  ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                 Y  G KA  +     G  +          S  E +     +   ++       + 
Sbjct: 1260 GHGWNYGRGIKAISE-----GQEIEPALVRRFDASMRERFGRLVEWQTEVRAVAEAGQLL 1314

Query: 496  DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
            D   G       +    +   +         A    +  G  ++   RR +P++  +   
Sbjct: 1315 DNGFGRLMRADPQRAHTQGPALMG-----QGAARDIMMTG--LLRLDRRILPMLRAQIHD 1367

Query: 556  NNLI 559
              + 
Sbjct: 1368 EIVF 1371



 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 9/140 (6%)

Query: 529  EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
             + I  G+ I     R       ++    +       R++       +  +         
Sbjct: 1269 IKAISEGQEIEPALVRRFDASMRERFGRLVEWQTEV-RAVAEAGQLLDNGFGRLMRADPQ 1327

Query: 589  REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIV-LTVHDEIVCETPDTDEFNASM- 646
            R +T G  L     Q  +RDI+  G++   +    ++   +HDEIV   P  +       
Sbjct: 1328 RAHTQGPALMG---QGAARDIMMTGLLRLDRRILPMLRAQIHDEIVFSVPVAEAEEVGRA 1384

Query: 647  LYHLMTSNPSWAKGLPLKAE 666
            +   ++    W +G+P+ A+
Sbjct: 1385 VVEALS--FEW-RGVPILAD 1401


>gi|110589136|gb|ABG77077.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 151

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 47/185 (25%), Gaps = 45/185 (24%)

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                +  +     +  ++  V+       +   +                         
Sbjct: 1   LGIERSEAQEYVDLYFARYPGVAAYMERTREQARE------------------------- 35

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +    GR L   D+               R            +Q  + DI+   M+
Sbjct: 36  -QGYVETLFGRRLYLPDIK----ARGPRRSAAERTAINAP------MQGTAADIIKRAML 84

Query: 616 NA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGY 668
                    +    +++ VHDE+V E  ++    A   L   M S    A  +PL  E  
Sbjct: 85  AVDGWIEADRPPLRLLMQVHDELVLEVQESFLETACQHLRDCMESAAELA--VPLLVEVG 142

Query: 669 ESKRY 673
               +
Sbjct: 143 IGDNW 147



 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 9/98 (9%), Positives = 20/98 (20%), Gaps = 12/98 (12%)

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           L +         +     +     +    +E   E    +   G          R     
Sbjct: 1   LGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGR---------RLYLPD 51

Query: 517 VSE---LWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
           +       +   +        G A    KR  + +   
Sbjct: 52  IKARGPRRSAAERTAINAPMQGTAADIIKRAMLAVDGW 89


>gi|254432090|ref|ZP_05045793.1| Pas55 [Cyanobium sp. PCC 7001]
 gi|197626543|gb|EDY39102.1| Pas55 [Cyanobium sp. PCC 7001]
          Length = 1757

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 99/714 (13%), Positives = 183/714 (25%), Gaps = 211/714 (29%)

Query: 6    IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-VELWDCVHD-PVMPQVLKEALEN 63
            +D ET S   L                 A      P + L          P  L   L +
Sbjct: 1146 LDLETCSATQLW----------------APAVPGRPFIRLVGTEAGIDTDPSSLVPWLAS 1189

Query: 64   TDVTIVAHNS-YFERTVLKACFNLDI----PIHRWICTLVLARSNGLP------------ 106
                 +AHN   F+   L     LD+       + I T+VLA +   P            
Sbjct: 1190 GGRL-IAHNGFGFDYLALARHHGLDLLQAAEEGKLIDTMVLALALDPPKPPVDGKLSGGQ 1248

Query: 107  ----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN----HREAWRLFG 158
                 +L    E   +   K  + K+L     K   H     + +             + 
Sbjct: 1249 IARLYSLDRCAERAGVPG-KTNDLKKLARDAAKAHGHTGKPKQLEAIGYGLIPRNHPDYL 1307

Query: 159  EYCKGDVTVTREIFKRLEPL----SSKEQELW---YLDQTINDRGYCVDVALAHTLNQIV 211
             Y +GDV   R ++  L P         +E+     L   I   G  +D+ L  +    +
Sbjct: 1308 AYLQGDVAACRAVYDALVPDGQLSPYARREMRVMGRLVTGITLHGTRLDLQLTQSRYDAI 1367

Query: 212  DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE--------------TGLHLEDLTE- 256
            +  + +    L +       +          L  +                L L    + 
Sbjct: 1368 EARKEECRSRLVADYGLPTMT-SSGAAAANPLSCKGAAEAITKAAADVGLVLPLTATGKP 1426

Query: 257  TTCQR----VLSSNKKLTPQAI-QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
            +T +     +L   ++   Q   ++    +  + +  +    L +   SDGR+    Q  
Sbjct: 1427 STSKDALGPLLEQVREQGNQTQTELLETILSLTGARSVYGTAL-DHCQSDGRIHP--QVA 1483

Query: 312  GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
                +GR+S          +      E                          R+  +  
Sbjct: 1484 PLQASGRFSLTNPGITVFGKRGGRVTE--------------------------RAIFLPD 1517

Query: 372  -EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
             +  +L+ ADL+ I+ R                                          A
Sbjct: 1518 ADDHRLLAADLSQIDMRA---------------------------------------MAA 1538

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              +       +Q G  A  ++A+  GL+ +    +    +                    
Sbjct: 1539 HAQDPAYLELFQPGRDAHSEIAAAVGLSRSDAKAIGHGWNYGMSVNGMVR---------- 1588

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
                         E+  +  R+   ++    +++ +                        
Sbjct: 1589 -----HGISQALAEQFDQGMRRSFPQLVAWRDQIRERAASGQ------------------ 1625

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
               D     +M P+                        R +T G  L     Q  +RD++
Sbjct: 1626 -LLDNGFGRMMRPN----------------------PARAHTQGPALMG---QGTARDLM 1659

Query: 611  AEGMMNATKAGYDIVLT----VHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAK 659
               M+   +    +V      VHDE+V   P      A   +   M     WA 
Sbjct: 1660 ---MLALLRLPLWLVPQLRFLVHDELVFSVPVARLDEAGEQILQAM--TFDWAP 1708


>gi|154336355|ref|XP_001564413.1| mitochondrial DNA polymerase I protein A [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134061448|emb|CAM38475.1| putative mitochondrial DNA polymerase I protein A [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1264

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 97/372 (26%), Gaps = 109/372 (29%)

Query: 303  RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
             L       G + TGR S      QNLPR   +  E +     L                
Sbjct: 970  TLHPNFLQEG-TDTGRLSCVEPNLQNLPRNGITSTEEEGEEDLLG--------------- 1013

Query: 363  CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
              R C +A+ G  L+  D   IE RVLA + G+   +KA  +  D++ T     F   P 
Sbjct: 1014 -FRRCFVAAAGCVLLSIDYQQIELRVLAHLCGDPALVKALTSSADIHQTIAEVVFKKKP- 1071

Query: 423  QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             V+ ++R++ K +   +                                           
Sbjct: 1072 -VSTEERSLAKRVVFGVL------------------------------------------ 1088

Query: 483  RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                      A            +          ++     +                  
Sbjct: 1089 --YGAGPKTLATHMGVTVDRALHITSLLTNAFPGINTYHRRVIAETR------------- 1133

Query: 543  RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                          N  +   SGR     D+ +      +      R+         ++V
Sbjct: 1134 -------------ANGFVRTLSGRLRYLPDICSTVLSRRSY---AERQA------FNSVV 1171

Query: 603  QAVSRDILAEGMMNATKA--------GYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTS 653
            Q  + D++   M+  +K            ++  +HDE+V             +L   M+ 
Sbjct: 1172 QGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKEHLRTVVPLLSSAMSH 1231

Query: 654  NPSWAKGLPLKA 665
                   +PL  
Sbjct: 1232 AMQLL--VPLSV 1241


>gi|71276173|ref|ZP_00652453.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon]
 gi|71163091|gb|EAO12813.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon]
          Length = 160

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/163 (44%), Positives = 89/163 (54%), Gaps = 11/163 (6%)

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR----DVG 574
             W  L  A    I + +            + M+  +  L + LPSGR L Y     D  
Sbjct: 2   AFWKALQFAATDAIRHPETA-----HTCCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEH 56

Query: 575 NNRSYLNTT--TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEI 632
              SY+ T   TR+ TR  TYGGKL ENI QAVSRD+LA  M     AGY IVLTVHDE+
Sbjct: 57  GALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEM 116

Query: 633 VCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           + E  D   FNA+ L  LM + P WA+GLPL AEG+++ RYRK
Sbjct: 117 ITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 159


>gi|28198296|ref|NP_778610.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182680933|ref|YP_001829093.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
 gi|28056366|gb|AAO28259.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1]
 gi|182631043|gb|ACB91819.1| DNA-directed DNA polymerase [Xylella fastidiosa M23]
          Length = 154

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/138 (50%), Positives = 83/138 (60%), Gaps = 6/138 (4%)

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKL 597
                + ++  +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL
Sbjct: 16  HTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKL 75

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI QAVSRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P W
Sbjct: 76  VENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPW 135

Query: 658 AKGLPLKAEGYESKRYRK 675
           A+GLPL AEG+E+ RYRK
Sbjct: 136 AQGLPLAAEGFETHRYRK 153


>gi|167946072|ref|ZP_02533146.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 151

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 47/185 (25%), Gaps = 45/185 (24%)

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                +  +     +  ++  V+       +   +                         
Sbjct: 1   MGIERSEAQEYVDLYFARYPGVAAYMERTREQARE------------------------- 35

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +    GR L   D+               R            +Q  + DI+   M+
Sbjct: 36  -QGYVETLFGRRLYLPDIK----ARGPRRSAAERTAINAP------MQGTAADIIKRAML 84

Query: 616 NA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGY 668
                    +    +++ VHDE+V E  ++    A   L   M S    A  +PL  E  
Sbjct: 85  AVDGWIEADRPPLRLLMQVHDELVLEVQESFLETACQHLRDCMESAAELA--VPLLVEVG 142

Query: 669 ESKRY 673
               +
Sbjct: 143 IGDNW 147



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 8/98 (8%), Positives = 20/98 (20%), Gaps = 12/98 (12%)

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           + +         +     +     +    +E   E    +   G          R     
Sbjct: 1   MGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGR---------RLYLPD 51

Query: 517 VSE---LWNELHQAFEQTIENGKAIIARKRRDVPLVYM 551
           +       +   +        G A    KR  + +   
Sbjct: 52  IKARGPRRSAAERTAINAPMQGTAADIIKRAMLAVDGW 89


>gi|324103781|gb|ADY17821.1| DNA polymerase [Nasonia vitripennis secondary endosymbiont phage]
          Length = 234

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 89/222 (40%), Positives = 126/222 (56%), Gaps = 10/222 (4%)

Query: 260 QRVLSSNKKLTPQAI---QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
              L              ++ + R+++  ++  K   L++++++DGRLRGT QF GASRT
Sbjct: 4   ASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRT 63

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGK 374
           GRW+G +F P NLPRP+   + +D+ +  L          D +Q+ S  +R C+IA  GK
Sbjct: 64  GRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPXGK 123

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARSFNVAPAQVTKDQR 429
           KLV++DL+ IE R+LAW+AGE WK+ AF   ++      Y   YAR+F + P  VTK QR
Sbjct: 124 KLVISDLSNIEGRMLAWLAGENWKVXAFSEFDNGKGDDLYKLAYARAFYLLPXNVTKAQR 183

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
            IGKVMEL LGY GG  AF   A   GL+L+  A     N  
Sbjct: 184 QIGKVMELGLGYGGGVAAFLTFALAYGLDLDEXAEAALPNIP 225


>gi|91224626|ref|ZP_01259887.1| DNA polymerase I [Vibrio alginolyticus 12G01]
 gi|91190514|gb|EAS76782.1| DNA polymerase I [Vibrio alginolyticus 12G01]
          Length = 680

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/663 (11%), Positives = 153/663 (23%), Gaps = 178/663 (26%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL--A 100
            + D       P++L+  L+      +AH++  E   L     L         T +   A
Sbjct: 109 YVIDLTKFKE-PKLLQPLLDLPTTY-IAHHAKAELHCL-WQLGLT-EPRTIWDTCIAERA 164

Query: 101 RSNGLP----------SALKAVGEALKLSSQKMEEGKELI--ARFCKGETHECLYDRNKP 148
           R  GL              +    A    + ++      +          +    D    
Sbjct: 165 RYLGLHVFDNDRVFDSENAEICARAEHAENNRIRYALNTVASRYDIHHRFNLVKSDLQHS 224

Query: 149 NHREAWRLFGE----YCKGDVTVTREIFKRLEPLSS----------KEQELWYLDQTIND 194
                   F      Y   D  V  +++       +           E      +  +  
Sbjct: 225 FIDYDSGEFTREQIHYAAEDAIVAAKLYLPQMQQLTLQGCYHHLITVEMPWVTTNAAMEW 284

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL--HLE 252
            G  VD    + +      +   L  +   L    + +    ++ K   F +  L  H  
Sbjct: 285 HGVSVDREKCNAVLNASTPKLETLRSQ---LAQMGLDNPNSHQQ-KETFFRQLNLLDHFN 340

Query: 253 DLTE-TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE--AMNSDGRLRGTLQ 309
              + +   ++L     + P    +       S+   ++ + L+    + SD R+    +
Sbjct: 341 KGGKYSFKLQLLKDLAHIHPAIGLL----AEFSKVQAIERDILLRPTIIGSDSRVHPEHK 396

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
            L    TGR S        LP                                 +R  +I
Sbjct: 397 QLEV-VTGRQSCASPNLLGLP-------------------------------GAMRPLII 424

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV----- 424
             +G  +  AD + IE  + A +  ++  +  F    D+Y       + +   +      
Sbjct: 425 PKKGNGIGEADYSQIEVAITAAVYSDKNLIAKFNA-GDIYTVMAQEFYAIDLDEEDRQCD 483

Query: 425 -------TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
                   KD+R I K   L + Y                                    
Sbjct: 484 SDTFKHKHKDKRDIMKTCVLGILYGLSPFGL----------------------------- 514

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                     +++   +      +  +     Q          +
Sbjct: 515 ---------------GSRLEISELEAKQLMNRFLAMFPTLKHMMETAPQQA--AYRGYVS 557

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL 597
                 R                              +N   L+               +
Sbjct: 558 TSTGLHRH----------------------------RSNNGALSRHETNW---------M 580

Query: 598 TENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASML-YHLMT 652
                Q  +  +         +        +VL +HD  + E P         L  ++M 
Sbjct: 581 VNMPAQGTAAALFKLAGNRLYQLYKPYNAKLVLAMHDAFIFEAPLDHMEEVGTLTTNVMI 640

Query: 653 SNP 655
              
Sbjct: 641 QAV 643


>gi|324103777|gb|ADY17819.1| DNA polymerase [Spalangia cameroni secondary endosymbiont phage]
          Length = 234

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 91/229 (39%), Positives = 131/229 (57%), Gaps = 10/229 (4%)

Query: 260 QRVLSSNKKLTPQAI---QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
              L              ++ + R+++  ++  K   L++++++DGRLRGT QF GASRT
Sbjct: 4   ASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKXKALLKSVSADGRLRGTKQFCGASRT 63

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCVIASEGK 374
           GRW+G +F P NLPRP+   + +D+ +  L          D +Q+ S  +R C+IA +GK
Sbjct: 64  GRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQGK 123

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-----YVTTYARSFNVAPAQVTKDQR 429
           KLV++DL+ IE R+LAW+AGE WK+ AF   ++      Y   YAR+FN+ P  VTK QR
Sbjct: 124 KLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPKNVTKAQR 183

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
            IGKVMEL LGY GG  AF   A   GL+L+  A     N   +   +A
Sbjct: 184 QIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPHKVKREA 232


>gi|66812036|ref|XP_640197.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4]
 gi|60468189|gb|EAL66199.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4]
          Length = 1459

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/713 (10%), Positives = 170/713 (23%), Gaps = 215/713 (30%)

Query: 50   DPVMPQVL---KEALENTDVTIVAHNSYF---ERTVLKACFNLDIPIHRWICTLVLARSN 103
               + + L   K  +++  +  V +   F           ++  I +      ++ A   
Sbjct: 767  GGKIEEKLNFMKNIIQDESIVKVVY---FCQESIKPFIKYYDW-INLRNCWDPMIGAWLL 822

Query: 104  GLPS------ALKAVGEALKL------------------SSQKMEEGKELIARFCKGETH 139
                      +++++   LKL                  ++      +         +  
Sbjct: 823  ESDLLSTKKVSIESLAHFLKLKSLNNNNNNNNNNNNNNNNNNNNNNNQNNNNLIFTEKEL 882

Query: 140  ECLYDRNKPNHREAWRLFGEYC--KGDVTVTREIFKRLEPLSS---------KEQELWYL 188
              +  R    + +       Y     D  +  +++  +               E  L  +
Sbjct: 883  NYILKRESLLYDKDKDTSSNYNNYLYDHWLVLKVYNVISISLFEFDLNFSFSNEMRLIPI 942

Query: 189  DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT----------YGLVSSSRCLEK 238
               +   G C ++       + +     +L + +                        ++
Sbjct: 943  LSKMELEGICCNIGKLDHYLKRISEFTKELKESVNKDDGDDDDDNNFKRFEEFKLGSFKE 1002

Query: 239  LKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            +  WL    G+ ++  ++ T    +R+  +N+K+     +V   R   S      +   +
Sbjct: 1003 VSGWLNQH-GVDIKSTSKETLIQQKRLNINNQKVVTFIDRVLFYRR-LSALKGHYIEPYL 1060

Query: 296  -----------EAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPS---------- 333
                          N++   + + Q+    + TGR S      Q +PR S          
Sbjct: 1061 LKYTNTTTTTKTRSNTNSTFQISCQWNQTGTATGRLSSSEPNLQTIPRTSTSLINPTTAT 1120

Query: 334  --------------------------------RSHEELDQIITHLPTSITSDPDPLQIIS 361
                                                +  Q          ++ +      
Sbjct: 1121 TTTTTTSTNNDLNDLDDLDDLDYNGNDGGSLDPDFIQALQDDDDNNNINNNNNNDDDDNI 1180

Query: 362  DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              +R+  I+ EG  LVV D   +E R++A  + ++  ++ FE+G D+      R  +   
Sbjct: 1181 INIRNSFISREGFSLVVLDYNQVELRIIAHFSRDKHLIEYFESGSDVINMMAVRLSDRDD 1240

Query: 422  AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
              V                                            +    +      +
Sbjct: 1241 LDVN-----------------------------------------NVDKETRDRVKRIVY 1259

Query: 482  CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                      K +  K   VS              ++       
Sbjct: 1260 GILYGIQAFSLGKLLNIPIYKASDHIKNFYFKFDGVSNFIQITKS---NAEKSHVVPTLG 1316

Query: 542  KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
            KR        K                                           K   +I
Sbjct: 1317 KRIRKLDSKFKT------------------------------------------KAVNSI 1334

Query: 602  VQAVSRDILAEGMMNATKAGY---------------DIVLTVHDEIVCETPDT 639
            +Q  S DI+   M+      +                 +L VHDE+V E PD 
Sbjct: 1335 IQGSSADIIKLAMITIMNELFLPLLNLNSNNNNKIPRFLLQVHDELVFEVPDE 1387


>gi|254502983|ref|ZP_05115134.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222439054|gb|EEE45733.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 593

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 81/523 (15%), Positives = 154/523 (29%), Gaps = 112/523 (21%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTL 97
           D      D +  P +   +K   E   V  V HN   F+   +   +   +  H+   TL
Sbjct: 28  DEATVYADQIGFPPIKDAIKRLKEADRV--VFHNGQGFDIHAINHFYPGTLTPHQVWDTL 85

Query: 98  VLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           V AR        ++L   G+ L        E K     F +                   
Sbjct: 86  VAARLLNPSERANSLDDWGKRLG-------EYKGEFKDFSRFSK---------------- 122

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY-------LDQTINDRGYCVDVALAHTL 207
               EY + DV VTR+++ +LEP      + +        +       G+ ++   A  L
Sbjct: 123 -ELVEYARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYIISLQVQNGFHLNTGKARGL 181

Query: 208 NQIVDVERTKLDQELESLT---------------------------------YGLVSSSR 234
              +  E + +++EL+ +                                     + +  
Sbjct: 182 EAELRQEASDIERELQEVFPPRLIADKRKGTAEVMPKANRKAIRKGQPYSRLKLEIFNPG 241

Query: 235 CLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS--AV 288
              +    L  +         +  +    + VL+  K   P+A  +             V
Sbjct: 242 SRPQAADRLIKKYKWKPKKFTDKGSPAIDESVLAKLK--YPEAKVLNRYLRITKLLGQVV 299

Query: 289 LKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              N  ++ +N +  R+ G +  +GA+ TGR S        + +                
Sbjct: 300 DGENGWLKLVNEETSRVHGAVNTIGAA-TGRCSHFKPNMAQVDKKDLR------------ 346

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           +R C  A  G  LV  D  G+E R+LA   G+           +
Sbjct: 347 ----------------MRECWEARPGWDLVGVDAEGLELRMLAHYLGKFDGGALTRALLE 390

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM----ASTTGLNLNTFA 463
                   +  +    V   +R   K +  AL Y  G     ++    A   G+NL    
Sbjct: 391 GSKEAGTDAHTINQKAVGLHKRDNAKRLLYALMYGAGDVKLGQIIVDDAREAGINLKGNK 450

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             +   +  +  +  +   + + +   +   +    G    R+
Sbjct: 451 KALGAKARKDLAKGMKGLDKLVDKVKDKAGKKKYIQGLDGRRI 493


>gi|170056642|ref|XP_001864122.1| DNA polymerase theta [Culex quinquefasciatus]
 gi|167876219|gb|EDS39602.1| DNA polymerase theta [Culex quinquefasciatus]
          Length = 1177

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/495 (12%), Positives = 134/495 (27%), Gaps = 98/495 (19%)

Query: 183  QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
              +      +   G+  D A    L   +   + ++ + +  L  G         ++   
Sbjct: 771  MPIHVALARMELVGFPADGAKLGALIARLKAAKERIAERVRQLNGGRKLDFGSTREVAAV 830

Query: 243  LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            L +       +    T ++VL      +P A  V   R   S  +   +  L   +   G
Sbjct: 831  LKVPKDR---NGRARTSRQVLERI--DSPLAALVIAWRKIDSNLSRT-IEPLGRGIV--G 882

Query: 303  RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
              R        + TGR S      Q + +                     + +P  +   
Sbjct: 883  GRRIYGSSYCFTSTGRISMHEPNLQTVVK-----------------DFRVEIEPGTVEMF 925

Query: 363  CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R      +  K L+ AD   +E  VL  ++ ++  L   ++G+D++    A+  ++  
Sbjct: 926  SCRGTFACEDSSKVLISADFCQLELCVLTHLSQDRKLLAVMKSGKDVFRGIAAKWNHIED 985

Query: 422  A-QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              +V+ + R   K +   + Y  GA++         LN++              + +   
Sbjct: 986  EREVSDELRNYTKAIVYGVIYGMGARSMAAE-----LNVDEDTARTLMEQFHATYPEIRR 1040

Query: 481  FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
            +   + +   E    +   G          R+    +    +          E       
Sbjct: 1041 YAEKVVQVTRERGYIETLTGR---------RRYLPAI----HSTDSTKRSEAERQAVCTT 1087

Query: 541  RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
             +                                   S  +     + R      K  E 
Sbjct: 1088 VQG----------------------------------SAADILKNAILRMARNLRKYRE- 1112

Query: 601  IVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNPSWAK 659
                         +         +VL +HDE++ E P         +    M +      
Sbjct: 1113 ----------RLALGEVE-----LVLHMHDELIFEAPRDQARKVGKILKSSMENCA--NL 1155

Query: 660  GLPLKAEGYESKRYR 674
             LPL+ +      + 
Sbjct: 1156 SLPLRVKVKSGPSWG 1170


>gi|254505350|ref|ZP_05117498.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
 gi|222436194|gb|EEE42876.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11]
          Length = 580

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 81/523 (15%), Positives = 154/523 (29%), Gaps = 112/523 (21%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTL 97
           D      D +  P +   +K   E   V  V HN   F+   +   +   +  H+   TL
Sbjct: 15  DEATVYADQIGFPPIKDAIKRLKEADRV--VFHNGQGFDIHAINHFYPGTLTPHQVWDTL 72

Query: 98  VLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           V AR        ++L   G+ L        E K     F +                   
Sbjct: 73  VAARLLNPSERANSLDDWGKRLG-------EYKGEFKDFSRFSK---------------- 109

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY-------LDQTINDRGYCVDVALAHTL 207
               EY + DV VTR+++ +LEP      + +        +       G+ ++   A  L
Sbjct: 110 -ELVEYARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYIISLQVQNGFHLNTGKARGL 168

Query: 208 NQIVDVERTKLDQELESLT---------------------------------YGLVSSSR 234
              +  E + +++EL+ +                                     + +  
Sbjct: 169 EAELRQEASDIERELQEVFPPRLIADKRKGTAEVMPKANRKAIRKGQPYSRLKLEIFNPG 228

Query: 235 CLEKLKTWLFLETGLH----LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS--AV 288
              +    L  +         +  +    + VL+  K   P+A  +             V
Sbjct: 229 SRPQAADRLIKKYKWKPKKFTDKGSPAIDESVLAKLK--YPEAKVLNRYLRITKLLGQVV 286

Query: 289 LKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              N  ++ +N +  R+ G +  +GA+ TGR S        + +                
Sbjct: 287 DGENGWLKLVNEETSRVHGAVNTIGAA-TGRCSHFKPNMAQVDKKDLR------------ 333

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                           +R C  A  G  LV  D  G+E R+LA   G+           +
Sbjct: 334 ----------------MRECWEARPGWDLVGVDAEGLELRMLAHYLGKFDGGALTRALLE 377

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM----ASTTGLNLNTFA 463
                   +  +    V   +R   K +  AL Y  G     ++    A   G+NL    
Sbjct: 378 GSKEAGTDAHTINQKAVGLHKRDNAKRLLYALMYGAGDVKLGQIIVDDAREAGINLKGNK 437

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             +   +  +  +  +   + + +   +   +    G    R+
Sbjct: 438 KALGAKARKDLAKGMKGLDKLVDKVKDKAGKKKYIQGLDGRRI 480


>gi|315282488|ref|ZP_07870892.1| DNA polymerase I [Listeria marthii FSL S4-120]
 gi|313613872|gb|EFR87612.1| DNA polymerase I [Listeria marthii FSL S4-120]
          Length = 143

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 49/176 (27%), Gaps = 44/176 (25%)

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                +   +  V E   ++ +  ++  +     I                         
Sbjct: 1   DFIDRYFVSYPAVKEYMQDIVRFAKE--KGYVETILH----------------------- 35

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------T 618
            R     ++ +             R            +Q  + DI+ + M+         
Sbjct: 36  -RRRYIPEIVSRNF---NVRGFAERTAMNTP------IQGSAADIIKKAMILMSERLKSE 85

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
           K    ++L VHDE++ E P+ +      +   +M +       +PLK +      +
Sbjct: 86  KLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 139


>gi|21234370|ref|NP_640280.1| DNA polymerase [Vibrio phage VpV262]
 gi|21064883|gb|AAM28367.1| DNA polymerase [Vibrio phage VpV262]
          Length = 661

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/541 (13%), Positives = 149/541 (27%), Gaps = 63/541 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQV 56
           M  L +D ET +  D  +       E   ++  ++ F          ++  +HD      
Sbjct: 26  MNFLVLDLETDTDGD--ERSPDATWEQNDIVSASWVFGTGGRGTEKFVYGGIHD---MDE 80

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSA------ 108
           L + +   D  +VAHN+ F+   L     LD        T++        L +       
Sbjct: 81  LIQDMYEAD-FVVAHNAKFDIKWLIRA-GLDPSRILVADTMLAEYVLTGNLKAGKKGALT 138

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L A+ +   L   K     +L+                +                D  + 
Sbjct: 139 LGALAKQY-LGVTKDPLVDKLMRGGVSPRVIPKSLLERRNKSDIFQTRNLWLKLRDEMME 197

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           R++             L  +   I   G  +D       + I      +++ +L  +  G
Sbjct: 198 RDVIHLFY----NRCLLSPVLADIELNGVHLDKERVCEEHDIASRRMAEVEADLMDMIDG 253

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNK--KLTPQAIQVFNNRMR 282
              + R + +++ +++                 T + VL      K     + +     +
Sbjct: 254 R--NPRSVPQMQEFIYDVLKFKPLKKRGVEWRPTGEEVLQFEARTKKQQAFLDLKKEFAQ 311

Query: 283 ASRSAVLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +      L+     +    D            + T R S                +   
Sbjct: 312 LNADLSKNLDYFYGVVTEREDCLFYAQFNQAQ-TVTHRLSSSGI------------KTKF 358

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
           ++     +    +           R+         ++  D A IE RV  ++  +    +
Sbjct: 359 EMYPKAKSIQLQNSPRKYKRLYSARN-----PDWYVIEMDGAQIEFRVAGYIGQDTRICQ 413

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
               G D++  T +   +    +VTKDQR   K       Y G            G +  
Sbjct: 414 DIVDGVDVHRFTASVLNHCDEEEVTKDQRTDAKPDTFKPLYGG----------QYGTDDQ 463

Query: 461 TFAHLVKTNSAPEEWEDAENF-CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
              +    N   +  +  +++  + ++     H     F           + Q    V  
Sbjct: 464 MAYYEAFRNKYQDITQAQQDWLMKVLRNKEITHPTGITFYYPNASMSSSGYCQDFPSVCN 523

Query: 520 L 520
            
Sbjct: 524 Y 524



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 24/106 (22%)

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS-RDILAEGMMNA- 617
           +  P+G +  Y +   + S                  +    VQ ++  +I+   ++   
Sbjct: 494 ITHPTGITFYYPNASMSSSGYCQDF----------PSVCNYPVQNLATAEIIPIALVAIW 543

Query: 618 -----TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658
                 K    +V TVHD ++ E+P  +         LM     WA
Sbjct: 544 HVMKAMKLQSFLVNTVHDSVISESPRDEL-------ELMYEISKWA 582


>gi|255087648|ref|XP_002505747.1| predicted protein [Micromonas sp. RCC299]
 gi|226521017|gb|ACO67005.1| predicted protein [Micromonas sp. RCC299]
          Length = 953

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 71/506 (14%), Positives = 127/506 (25%), Gaps = 112/506 (22%)

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELES-LTYGLVSSSRCLEKLKTWLFLETGL 249
            +   G   D +        +  +   +++   + +  G   +    +++   L+    L
Sbjct: 515 QMEHVGLGFDPSAVRAAVGDLRRKLAGIEESAAAAMPDGARVNLASPQQVAEALYGTLKL 574

Query: 250 HLED-------LTE--TTCQRVLSSNKKL--TPQAIQVFNNRMRASRSAVLKLNTLVEA- 297
                       T   TT    L S +     P    V   R      AV K   +  + 
Sbjct: 575 PPPSSNAQQGAKTAQLTTKDDALRSLRDKRLHPLPGLVLEYR------AVSKTIAMCNSY 628

Query: 298 --MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
             M    RLR        + TGR S      Q + +                        
Sbjct: 629 ASMARGKRLRCDWN-NTRTATGRLSSTNPNIQAVGK------------------------ 663

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL----YVT 411
             +     +R    A  GK L+ AD + IE R+LA +AG++  +             +  
Sbjct: 664 -DETGEFSLRRAFSAPPGKVLLAADYSQIELRMLAHLAGDRGLVALLRRQITDGGDVFER 722

Query: 412 TYARSFNVAPAQV-TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            +       P     K+ R   K     L Y  G     +      L           N+
Sbjct: 723 IWNAGRGAPPETPVAKEDRDRAKRTVYGLLYGQGKTGLAE-----KLGCTGDVAQGLINA 777

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
               +     F    +E         L  G           +     +          E+
Sbjct: 778 FFRAFPGVRAFVTRTKERARVEKRVVLPSGR---------HRPLPGFASADQR-----ER 823

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                KA+ +  +     +        L    P G             +  TTT      
Sbjct: 824 AGAERKAVNSLIQGSAADLMKIAMCRWLAAASPVG-------------FEPTTTEHADVA 870

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCET---PDTDEFNASML 647
                          +  +              +V  +HDE++ E    P      A ++
Sbjct: 871 S-------------TAATL-----------PARLVAQIHDELLFECEDSPTAVRAAAQVV 906

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRY 673
              M         +P  A+    + +
Sbjct: 907 AACMERAVP-QLAVPTPAKVSVGRTW 931


>gi|311743682|ref|ZP_07717488.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
 gi|311312812|gb|EFQ82723.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
          Length = 1564

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 99/661 (14%), Positives = 174/661 (26%), Gaps = 161/661 (24%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
            L +D ET     L          D  +         +     D          +      
Sbjct: 999  LTVDVETT-GYPLGH-------RDYALRTIQL---GNDAFAIDFDAADPEQAQVAGRHVG 1047

Query: 64   TDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPS-----ALKAVGEAL 116
                + AH++  +   L     +D+     R   T++ A+     S      LK +  A+
Sbjct: 1048 AAAMLHAHSATADLIPLAHAGLIDLDDAWSRMHDTVIPAKLADPASTGSDPGLKKLAGAV 1107

Query: 117  KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-------RLFGEYCKGDV---- 165
               +      +E      K            P  R  W            Y   DV    
Sbjct: 1108 LGDAAVSTAAEEGRKALFKAGKWLTEVKSTTPISRSGWAQVNPACETMIRYAASDVIDDA 1167

Query: 166  TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
             +   +      L  +E+    +   + DRG  +D  L   L+       T   + +   
Sbjct: 1168 ALALRLPPLPPELLERERLAQRMTARVADRGLRLDADLVERLHAEQTAALTAASEHIR-- 1225

Query: 226  TYGLVSSSRCLEKLKTWLFLETGLHLEDL---TETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                V +    +++   L    G  L        +  + VL   K +  +   +   R+ 
Sbjct: 1226 -AFGVDNPGSDQQVAAAL-ERLGAPLPRTKTGRPSVAKGVLDPLKNVDGEIGDLVRARLD 1283

Query: 283  ASRSAV---LKLNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
               +     L L    + + N DGR R T+ +  A+ TGR S      Q +PR       
Sbjct: 1284 YQTAENRLGLFLEPYRQLVTNGDGRARPTI-YTLAADTGRMSCVRPNLQQVPREG----- 1337

Query: 339  LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                                      R+C+ A  G  L+ AD +G+E RV A ++ +Q  
Sbjct: 1338 ------------------------GFRACITADPGHVLISADFSGVELRVAAALSQDQNL 1373

Query: 399  LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +      +       A+   V      K +R   K                      G  
Sbjct: 1374 MAIVADPDRDIHREIAQL--VWGPDAGKPERYQAKRKV--------------FGRLYGSG 1417

Query: 459  LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
            LN                                           + + +A       +S
Sbjct: 1418 LNGLITSDPP-----------------------------VSEPIAKAIIEAMDLMTPGLS 1448

Query: 519  ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
                 +                             D         SGR++          
Sbjct: 1449 SWSRMVADGV-------------------------DAGRTEFQAYSGRTIYMPTDRG--- 1480

Query: 579  YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT--KAGYDIVLTVHDEIVCET 636
                          Y G      +Q  +R++L + ++  +  + G  ++L VHDE+V   
Sbjct: 1481 --------------YAGP--NYCIQGTARELLIDALVRWSGTRWGNAVLLPVHDELVVHV 1524

Query: 637  P 637
            P
Sbjct: 1525 P 1525


>gi|222871907|gb|EEF09038.1| predicted protein [Populus trichocarpa]
          Length = 161

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 50/192 (26%), Gaps = 44/192 (22%)

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
               A        A +     +  ++  V+    +  Q   +                  
Sbjct: 3   AFGLASNLGIEREAAKHYIDRYFMRYPGVAHYMEQTRQTARE------------------ 44

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                      +    GR L   D+               R            +Q  + D
Sbjct: 45  --------QGYVETVFGRRLWLPDINGGNGPRRQA---AERAAINAP------MQGTAAD 87

Query: 609 ILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGL 661
           ++   M+         + G   ++ VHDE+V E P  +       L  LM +  +    +
Sbjct: 88  LIKLSMIAVQDWLEGERLGTRQIMQVHDELVLEVPQAELELVRVKLPELMCAVAT--LNV 145

Query: 662 PLKAEGYESKRY 673
           PL AE      +
Sbjct: 146 PLVAEVGSGANW 157


>gi|109392407|ref|YP_654951.1| gp54 [Mycobacterium phage Cooper]
 gi|88910241|gb|ABD58171.1| gp54 [Mycobacterium phage Cooper]
          Length = 617

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 113/722 (15%), Positives = 182/722 (25%), Gaps = 212/722 (29%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD----DHPVELWDCVHDPVMPQVLKE 59
           +  D ET    ++             +      +D         L D   D    +V   
Sbjct: 57  IAFDIETPGLDNV-----------FTINCVTAAWDWPDGGTQTILLDPARDEEHWEVAVA 105

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL-DIPIHRWICTLVLARSNGL----PSALKAVG- 113
            L     T+  HN  F+   L     + D  I R + TL++ R        P  L A+  
Sbjct: 106 LLH-AARTVAFHNVPFDAPPLYHAGLINDSTIRRIVDTLLITRFAVPDVMVPKNLTALSV 164

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEY-CKGDVTVTREI 171
             L L   K      L   F           +               Y    D   T  +
Sbjct: 165 RHLGLDDDKGG----LERAF----KAAGYKTQQAGFEGMDITSPVYRYGAMADTVATLRV 216

Query: 172 FKRLE-PLSSKEQELW-------------YLDQTINDR----------GYCVDVALAHTL 207
              +         +                L  T              G  VD A     
Sbjct: 217 EPLMRAKALHWATDHPFATYGATTQAEAEELLATQETVHRVMLRRSAVGLAVDRAYLDRY 276

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH------LEDLTETTCQR 261
            + VD++R     EL    +GL   S    KL  +L     L              T   
Sbjct: 277 AEQVDIDRNLAIAELA--AHGLEGGSGKGAKLVEYLAERGELPANWPRTPTRKLRATKAD 334

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
            L         A +      +     +  L  +    +  GR    +  LGAS TGR + 
Sbjct: 335 -LDGLDHPLAAAQRKLAQIDKV----MGYLEKVDRQASVTGRCHPQVGVLGASATGRMAY 389

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                Q  P  +                                  +I  +G+ L   D 
Sbjct: 390 GSPELQQFPADA--------------------------------RAIITDDGQGLTSIDW 417

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE   +A MA +   L  FE GEDLY             +     R + KV+ L    
Sbjct: 418 SQIEPVTMALMAKDHEFLAPFEAGEDLYE---------PIQRSAGIDRPVAKVVLLGTM- 467

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         GL +                               + A +      
Sbjct: 468 -------------YGLGI------------------------------AKLARQIGHTEE 484

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
           +  ++++   +          ++    E                              ++
Sbjct: 485 SAAQIRRQMFEAMKGCERWMRKVQNVAET--------------------------YGRVV 518

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
              GR L                        Y  K     +Q  + D+LA  ++   + G
Sbjct: 519 TAGGRILPVDQG-------------------YEYKAVNYAIQGSAYDVLAHSIVEMDRRG 559

Query: 622 YDIVLTV--HDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAE-GYESKRY 673
               L +  HDE+V +T       A  +  +M + P     WA+ +P L+ +       +
Sbjct: 560 IGDHLQLAMHDELVVDT-----EVAEEVQQIMLTPPEFLITWAERVPVLRTDRADMGSAW 614

Query: 674 RK 675
            K
Sbjct: 615 AK 616


>gi|74228402|dbj|BAE24040.1| unnamed protein product [Mus musculus]
          Length = 299

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 98/365 (26%), Gaps = 121/365 (33%)

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                D     S  +R   +   G  ++ AD + +E R+LA ++ +   ++   TG D++
Sbjct: 9   EEKASDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVF 68

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            +  A    + P  V  D R   K +   + Y  GAK+  +      + +         +
Sbjct: 69  RSIAAEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQ-----MGIKENDAASYID 123

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
           S    ++   +F R   +N  ++   +  +G          R+    + +          
Sbjct: 124 SFKSRYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDN-------- 166

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                                                   Y      R  +NTT      
Sbjct: 167 ---------------------------------------PYHKAHAERQAINTT------ 181

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATK------------------------------ 619
                       VQ  + DI+    +N  K                              
Sbjct: 182 ------------VQGSAADIVKIATVNIQKQLETFRSTFKSHGHRESMLQNDRTGLLPKR 229

Query: 620 ---------AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYE 669
                     G   +L +HDE++ E  + D    + +    M         + LK +   
Sbjct: 230 KLKGMFCPMRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--LSVKLKVKVKI 287

Query: 670 SKRYR 674
              + 
Sbjct: 288 GASWG 292


>gi|152003765|gb|ABB17229.2| DNA polymerase [Cyanophage S-CBP2]
          Length = 588

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 92/625 (14%), Positives = 165/625 (26%), Gaps = 143/625 (22%)

Query: 1   MATLFIDFETRS---PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
           M  L  D ET      +    C + K  E   V    F FDD             +   L
Sbjct: 1   MK-LVFDIETDGFLRKLTTVHCVVAKDIETGEV----FKFDDS-------GRHQSVSSGL 48

Query: 58  KEALENTDVTIVAHNS-YFERTVLKACFNLDIPIHR-WICTLVLARS------------- 102
              +E  ++    HN   F+   ++  +    P    +  TL+L+R              
Sbjct: 49  TLLMEAEEL--WGHNIIGFDVPAIQEIYPFFQPWESTYYDTLILSRLFFTDMLDRDLRSK 106

Query: 103 -------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
                       +L+A G  L +   K E GK+L   +                      
Sbjct: 107 PANMPGNLYGRHSLEAWGYRLGVL--KSEYGKQLHGDWATYTP----------------- 147

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKE-------QELWYLDQTINDRGYCVDVALAHTLN 208
              EYC+ DV     I K  +P   +         +   +       G+  D+  A  L 
Sbjct: 148 EMLEYCEQDVEANLPIVKLFQPKLEQYADAIKTEHDCALVMTRQEQAGFPFDIDKARALE 207

Query: 209 QIVDVERTKLDQELE---------------------SLTYGL-----VSSSRCLEKLKTW 242
             +  E   L  E+                       +T          S    + +   
Sbjct: 208 SKLRSELETLSDEMRATFTFVAGKEFTPARNNATRGYITGCPFTKLTEFSPTSRDHIAWA 267

Query: 243 LFLETGLHL----EDLTETTCQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
                G       +       + VL++   +   +  ++   +      +  K N+ ++ 
Sbjct: 268 FQQHRGWEPIEMTDTGKPKIDEEVLNAIGTEEAKKFGRILELQKHVGMLSEGK-NSWLQM 326

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
           +  DGR+  +     A+  GR +        +P                           
Sbjct: 327 VEKDGRIHHSCVLNTAT--GRNAHMRPNLAQVPSGHE----------------------- 361

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                  R      EG   V AD +G+E R LA          A   G            
Sbjct: 362 ------FRELFTPGEGYVQVGADASGLELRCLAHYL-------ARFDGGKFGKVLLEGDI 408

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
           +   A +    R  GK +   L Y GG       A          +   +     +    
Sbjct: 409 HTDLANIYGTDRKTGKTVTYCLIYGGGDTKLGLSA-----GEPKKSAASRGKKIRQAIMK 463

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF-EQTIENGK 536
             +    +     E A   +  G     +    R+ H+ ++ L         ++ +    
Sbjct: 464 DLDGFAQLITAVQERAQSGVITGIDGRPI--RMRKAHAALNYLLQSCGAVICKKWVVRSN 521

Query: 537 AIIARKRRDVPLVYMKKDKNNLILM 561
            ++     D   +    D+  L + 
Sbjct: 522 ELLTEAGIDYTPLAFVHDEQQLAVR 546



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 8/89 (8%)

Query: 594 GGKLTENIVQAVSRDILAEGMMN----ATKAG--YDIVLTVHDEIVCETPDTDEFNASML 647
                  ++Q+    I  + ++      T+AG  Y  +  VHDE            AS L
Sbjct: 497 AHAALNYLLQSCGAVICKKWVVRSNELLTEAGIDYTPLAFVHDEQQLAVRPDQVEMASTL 556

Query: 648 YHLMTSNPSWA--KGLPLKAEGYESKRYR 674
             L   +   A    +PL  +      + 
Sbjct: 557 ISLAMKDVEHAIKFRVPLDCDVQSGANWG 585


>gi|320158402|ref|YP_004190780.1| DNA polymerase [Vibrio vulnificus MO6-24/O]
 gi|319933714|gb|ADV88577.1| DNA polymerase [Vibrio vulnificus MO6-24/O]
          Length = 687

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 107/760 (14%), Positives = 187/760 (24%), Gaps = 190/760 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D ET   +           ED+              E     H       L + L
Sbjct: 26  RILAFDIETNGLLMTVSRFHTAVCEDL--------VTGEVREYRPHEH-----HELLKDL 72

Query: 62  ENTDVTIVAHN-SYFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSALKAVGEALK-- 117
              DV  VAHN   ++   LK  F   DI   + I TLVL+R        + +    +  
Sbjct: 73  YEADVL-VAHNGINYDVPALKKLFPFWDIQPTKVIDTLVLSRLLFADIKDRDMSGVRRWR 131

Query: 118 -----------LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
                      +   K+     L A   + + ++  Y   +    E       YC+ DVT
Sbjct: 132 LREEGHEVTGWVLPPKLLGSHSLKAWGYRLQEYKGDYGEQEDAWAEFSEDMLIYCRQDVT 191

Query: 167 VTREIFKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           VT ++ +RL              E E+ +L       G+  DVA A  L   +  +R  +
Sbjct: 192 VTCKLIRRLMKEFPDASFKAMQLEHEIQWLMSQQERNGFKFDVAKAEQLYFKLLGDRETI 251

Query: 219 DQELESLTYGLV--------------------------------SSSRCLEKLKTWLFLE 246
            Q+L                                         +    +     L   
Sbjct: 252 RQKLVDKFGTWYASNGVTTPKRSMNRMGMSYTAGAPYTKLKEVTFNPASRDHCAKVLQEA 311

Query: 247 TGL--HLEDLTETT-CQRVLSSNKKLTPQAIQVFNNRMRASRSAV---LKLNTLVEAMNS 300
             +     D  +    + VLS  K       ++ N     ++            +  +  
Sbjct: 312 GVIFTEFTDGNKPKIDEEVLSHIKLPE---AEMLNEFFMLNKRIGQIAEGNQAWLRLVTP 368

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           +G + G++   GA  TGR          +P                              
Sbjct: 369 EGFIHGSINPNGA-VTGRALHSHPNIAQVP------------------------SGRAPY 403

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFE----TGEDLYVTTYA 414
               R C    +G  L+ +D +G+E R L       ++              +       
Sbjct: 404 GQECRECFTVPDGWVLLGSDASGLELRCLGNRMFPWDKGAYNKVILEGDIHWENAQAAGF 463

Query: 415 RSFNVAPAQVTKDQRA---IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             + V   +   D        K    A  Y GG +         G     +    +    
Sbjct: 464 VDYGVIRDKHNPDHELRRGKAKTFIYAFLYGGGDELI---GMQVGYTHEEYLAWKEA--- 517

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                  +   R  +    E     +      + VKK + +    +              
Sbjct: 518 GAHIPIIKQLERRGERWTRE----RVCYILKGKEVKKKFLEGLPAL-------------- 559

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                         +     K  K++  ++   GR +  R   +                
Sbjct: 560 ------------DKLIKKCKKAAKDDGYVIGLDGRKVFCRSQHS---------------- 591

Query: 592 TYGGKLTENIVQAVSRDILAEGMM----NATKAGYD--------IVLTVHDEIVCETPDT 639
                     +Q+    I     +       + GY             VHDE+       
Sbjct: 592 -----ALNTQLQSDGALICKMWCVVVNLMMQERGYKHGFDGDYAFCAWVHDEVQVACRSE 646

Query: 640 D-EFNASMLYHLMTSNPSWAK-----GLPLKAEGYESKRY 673
                   +         + +       PL AE      +
Sbjct: 647 AIAQEMGQICK---DAMHFVERYYSVDCPLDAEFDIGSSW 683


>gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 297

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/387 (14%), Positives = 118/387 (30%), Gaps = 104/387 (26%)

Query: 291 LNTLVEAMNS-DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           + TL++A+N  DGR+  T     A+ TGR S      QN+P  + +  +           
Sbjct: 8   VQTLMDAINPRDGRIHTTFTQTVAA-TGRLSSVDPNLQNIPNRNATGRD----------- 55

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKK-LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                         +RS  +  EG   L+ AD + +E R++A ++G++  +KAF++G D 
Sbjct: 56  --------------IRSAFVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGADF 101

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
           +    +  + +   +VT DQR   K M   L Y            +  L + +       
Sbjct: 102 HRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYG-----LSTYGLSQQLGIPSKEAAALR 156

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
           +   + +    ++   +  N           G          R+    ++        A 
Sbjct: 157 SRYFQTFGKVHDYLESLVSNARNTGYTQTMFGR---------RRYFPALTSANRVARDAA 207

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS-GRSLVYRDVGNNRSYLNTTTRQL 587
           E             R  +         + + + +    R+L   ++ +            
Sbjct: 208 E-------------RGALNAPIQGTAADIMKIAMIRVDRALRDGNLNSRIV--------- 245

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647
                                      +          L V  E+    P  ++    ++
Sbjct: 246 ---------------------------LQIHDE-----LVV--EL---APGEEKRVTELV 268

Query: 648 YHLMTSNPSWAKGLPLKAEGYESKRYR 674
              M    + A  +PL         ++
Sbjct: 269 RDAMEHAVNIA--VPLDVSTGVGSDWQ 293


>gi|194100568|ref|YP_002003893.1| gp54 [Mycobacterium phage Nigel]
 gi|192758284|gb|ACF05057.1| gp54 [Mycobacterium phage Nigel]
          Length = 618

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 111/722 (15%), Positives = 189/722 (26%), Gaps = 211/722 (29%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHDPVMPQVLK 58
           + +D ET    +              +      ++            D   +     +++
Sbjct: 57  VAMDIETPGLDN-----------AFTINCVTMAWEMPTTGHVRTVILDPSRNRADHAIVR 105

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD-IPIHRWICTLVLARSNGL----PSALKAVG 113
           + +E+       HN+ F+   L      D   I++ + TL+++R        P  L A+ 
Sbjct: 106 DMVEHAGRLA-FHNAPFDTPPLLHNQLFDRPDINKIVDTLLISRFAVPDVMVPKNLTALS 164

Query: 114 -EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY-CKGDVTVTREI 171
              L L   K    +                  +             Y    D   T  +
Sbjct: 165 VRHLGLDDDKGGL-ERAFKAAGYKTQAAGFEGMDIT------SPVYRYGAMADTVATLRL 217

Query: 172 FKRLE-----------------------PLSSKEQELWYLDQTIN-DRGYCVDVALAHTL 207
              +                              QE  +         G  VD A     
Sbjct: 218 EPLMRAKALHWATDHPFQTYGATTEAEAEQLLWTQETVHRVMLRRSAVGLAVDRAYLDRY 277

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRV 262
            + VDV+R     EL    +GL   S    KL  +L+    L               +  
Sbjct: 278 AEQVDVDRNLAVAELA--AHGLEGGSGKAAKLVEYLYQRGELPEPWPRTPTKKLRATKDD 335

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAV-LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSG 321
           L       P A      R  A+   V   L  +    +  GR    +  LGAS TGR + 
Sbjct: 336 LEGL--DHPLAA---AQRKLATIEKVMGYLAKVDRQASVTGRCHPQVGVLGASATGRMAY 390

Query: 322 CVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL 381
                Q  P  +                                  +I  +G+ L   D 
Sbjct: 391 GSPELQQFPADA--------------------------------RAIITDDGQGLTSIDW 418

Query: 382 AGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGY 441
           + IE   +A MA +   L  FE GEDLY             +     R + KV+ L    
Sbjct: 419 SQIEPVTMALMAKDHDFLAPFEAGEDLYE---------PIQRSAGIDRPVAKVVLLGTM- 468

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                         GL +                               + A +      
Sbjct: 469 -------------YGLGI------------------------------AKLARQIGHTEE 485

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
           +  ++++   +          ++    E                              ++
Sbjct: 486 SAAQIRRQMFEAMKGCERWMRKVQNVAET--------------------------YGRVV 519

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
              GR L   D G                  Y  K     +Q  + D+LA  ++   + G
Sbjct: 520 TAGGRILPV-DPG------------------YEYKAVNYAIQGSAYDVLANSIVEMDRRG 560

Query: 622 YDIVLTV--HDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAE-GYESKRY 673
               L +  HDE+V +T       A  +  +M + P     WA+ +P L+ +       +
Sbjct: 561 ISDHLQLAMHDELVVDT-----EVAEEVQQIMLTPPEFLITWAERVPVLRTDRADMGSAW 615

Query: 674 RK 675
            K
Sbjct: 616 AK 617


>gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium]
          Length = 557

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 47/187 (25%), Gaps = 29/187 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVL 57
             +  D ET             YA DV ++  +F +         C         + Q  
Sbjct: 371 DEISFDTETT----------GTYAHDVELVGLSFCYKTGEGYYIPCPPSANETQALLQHF 420

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEA 115
           K   ++     +  N  ++  VLK      +   ++  T++            +  +   
Sbjct: 421 KPLFDDASKKWIGQNVKYDLIVLKWYG--VLLAGQFFDTMLAHYLIEPEGRRGMDYLSAQ 478

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 +    +ELI +                          EY   D  +T ++    
Sbjct: 479 Y--LQYEPVHIEELIGK---------KGKNQLTMKDVELEKIKEYAAEDADITLQLKNTY 527

Query: 176 EPLSSKE 182
                  
Sbjct: 528 SKPFGHF 534


>gi|307579401|gb|ADN63370.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 132

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/130 (53%), Positives = 81/130 (62%), Gaps = 6/130 (4%)

Query: 552 KKDKNNLILMLPSGRSLVYR----DVGNNRSYLNTT--TRQLTREYTYGGKLTENIVQAV 605
           +  +  L L LPSGR L Y     D     SY+ T   TR+ TR  TYGGKL ENI QAV
Sbjct: 2   QYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAV 61

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKA 665
           SRD+LA  M     AGY IVLTVHDEI+ E  D   FNA+ L  LM + P WA+GLPL A
Sbjct: 62  SRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAA 121

Query: 666 EGYESKRYRK 675
           EG+E+ RYRK
Sbjct: 122 EGFETHRYRK 131


>gi|115754782|ref|XP_790049.2| PREDICTED: similar to DNA polymerase N [Strongylocentrotus
            purpuratus]
 gi|115960873|ref|XP_001194514.1| PREDICTED: similar to DNA polymerase N [Strongylocentrotus
            purpuratus]
          Length = 1312

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/466 (11%), Positives = 113/466 (24%), Gaps = 142/466 (30%)

Query: 198  CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL----HLED 253
             +       L   ++ E   ++++                +L+  LF E  L      + 
Sbjct: 762  KLQRKNLWELFINLEDEIKDVERQCYKKAGHP-FQITSHIQLRQVLFDELKLDELCPGQK 820

Query: 254  LT-------ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            L        ++T + VL   K L P    V  +R                          
Sbjct: 821  LARTNVQNLKSTSEMVLHKLKDLHPLPELVLTHRQ------------------------- 855

Query: 307  TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                                QN+P+      +         ++++S      +    +R 
Sbjct: 856  ------------------NIQNIPKQPLQVHKDANGSVVNESTVSSTAPATTLW---MRE 894

Query: 367  CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
               + EG   + AD   IE R+LA ++ +   LK F       +                
Sbjct: 895  PFFSHEGWSFIAADFQSIELRILAHLSQDAVLLKVFNDAGSTDIFVQLTC---------- 944

Query: 427  DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
                                         GLNL          +   E      +     
Sbjct: 945  --------------------------EWLGLNLE------DVKTGDRERTKRIVYSVIYG 972

Query: 487  ENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDV 546
                  A          +   K++  K   V+          ++                
Sbjct: 973  VGAERLAETLNDTKENAKAFTKSFLVKFKGVNTFAQRCISECQR---------------- 1016

Query: 547  PLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                      +  +     R  +  ++ +   ++ +      R+          ++Q  +
Sbjct: 1017 ----------HGHVKTIFHRHRLISNISSQNFHVRSH---AERQA------VNFVIQGSA 1057

Query: 607  RDILAEGMMNA-------TKAGYDIVLTVHDEIVCETPDTDEFNAS 645
             DI    M++              +++ +HDE++ E  D D     
Sbjct: 1058 ADICKLAMIHIMTVLSERNTVRARLLVQIHDELLFEVHDEDINEVK 1103


>gi|254414114|ref|ZP_05027882.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196179250|gb|EDX74246.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 704

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 98/714 (13%), Positives = 197/714 (27%), Gaps = 126/714 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCV----HDPVMPQVLKE 59
            D ET S             E   + L     +     V + D          + Q L+ 
Sbjct: 44  FDLETFS----RASTPAIAPETGEIRLIQIAIEQPAVQVIVIDLGWTAKERSRIHQKLES 99

Query: 60  A---------LENTDVTIVAHNSYFE-RTVLKACFNLDIPIHRWICTLVLARS------- 102
                     L N  V +V H+  FE R +L      + PI     T ++++        
Sbjct: 100 LGFWTTLQERLANPQVEVVGHSLDFEQRWMLAKY---NFPIRNLRDTKLMSQVYWAGLDP 156

Query: 103 -----NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                +G P +L++V   L +S  K  +  +       G+        N+          
Sbjct: 157 WLLKQHGKPHSLESVCLRLGISIDKSRQTSDW----GWGDLGNGQLSNNQF--------- 203

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKE--QELWYLD-------QTINDRGYCVDVALAHTLN 208
             Y   D ++T ++   LEP   +      + ++         ++  G  VD  +   + 
Sbjct: 204 -NYAANDASITIKVHDLLEPRLKEIGVWTSYLIECAASPAFAQMSHYGMPVDEGVLADVT 262

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
              +     L ++L       +      +KL   +     + L    ++     LS    
Sbjct: 263 VAYEAAYQSLVEQLGGTFSECLPHLYSPKKLIALINRRFRVTL----KSANVDDLSKL-- 316

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                     + ++ +++ V  L+++   +  +G +RG    +     GR S      QN
Sbjct: 317 -WGIPEVRLISVIKTTKTYVDYLHSIQAQVR-NGFVRGKYTQINRKGFGRSSCSEPNLQN 374

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            P P+    EL                        +RS      G   V  D + + ARV
Sbjct: 375 PPSPTTFPPEL-----------------TPYNLPPIRSVFRTHSGCIGVWCDASKLHARV 417

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
               + +   +  F +       T A   +      +                       
Sbjct: 418 ATQASLDPELIARFNSPHGDIFCTIAEKLSQLEGMGSDWTEE----------------NI 461

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
           ++            A  ++  S    +           +         +    + +   K
Sbjct: 462 RRWTLDKHHANYAQASRLRAMSKSVHYGSQNLQGWRTLQKTIRTKSGIVLSDESAKNSIK 521

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           AWRQ +  ++   + + +                   + L+  +       +   +GR +
Sbjct: 522 AWRQTYKVLASFQHSIVEKAN--------HDLPSVLGMHLIQSRSKFGLGYVRCLTGRGV 573

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ---AVS-------RDILA------E 612
                  N         +   +   G   T   V+   A +        DI+        
Sbjct: 574 FLPKWRQNVEDGREPKIEGKWKKFNGLYSTLVSVKSPDANAAYWTMCEADIIKTFLAYCV 633

Query: 613 GMMNAT-KAGYDIVLTVHDEIVCETPDTD-EFNASMLYHLMTSNPS-WAKGLPL 663
              +A  +    +    HDE      +      AS +   M        K +P+
Sbjct: 634 AAFDAYPEWEAWVGNCCHDEADIFGKEEFGVEIASAVQMAMERAMRIVIKDIPV 687


>gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56]
          Length = 452

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 50/206 (24%), Gaps = 55/206 (26%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDCVHDP--- 51
           +  D ET S            A    ++ F+    D+                 H     
Sbjct: 256 VAFDTETTSLD----------AMQAELVGFSMAIADNVADPTGTKIRAAYVPLAHKNGVG 305

Query: 52  ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                               LK  LE+  V  VA N  ++  ++K      I    +  T
Sbjct: 306 DLLGGGLAENQVPMRDALPRLKALLEDAAVLKVAQNLKYDYLLMKRY---GIETKSFDDT 362

Query: 97  LVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           ++++           +  + E           G   I      +        N       
Sbjct: 363 MLISYVLDAGTGAHGMDPLSEKF--------LGHTPIPY----KDVAGSGRANVTFDLVD 410

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS 179
                 Y   D  VT  ++  L+P  
Sbjct: 411 IDRATHYAAEDADVTLRLWLVLKPRL 436


>gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 221

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 87/298 (29%), Gaps = 88/298 (29%)

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E R++A ++G++  ++AF +G D +    +  + +   ++T DQR+  K M   L    
Sbjct: 1   MELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGL---- 56

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                       GL+    A  +K                                    
Sbjct: 57  ----------AYGLSTYGLAQQLKI------------------------------SPKEA 76

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           E ++  +     +V E    L     +                                 
Sbjct: 77  ESLRNQYFATFGKVHEYLESLVSTARE--------------------------KGYTETI 110

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---- 619
            GR   +  + +    +        R            +Q  + DI+   M+ A+     
Sbjct: 111 YGRRRYFPGLKSPNRAVRDA---AERAALNAP------IQGSAADIMKIAMIRASDSLRD 161

Query: 620 --AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
                 I+L +HDE+V E    +   A+ L    M    + A  +PL A       ++
Sbjct: 162 ACLKSRIILQIHDELVVEIAPGEAEQATALVRNAMEHAVTMA--VPLDASTGIGSDWQ 217


>gi|307106559|gb|EFN54804.1| hypothetical protein CHLNCDRAFT_134785 [Chlorella variabilis]
          Length = 471

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 60/230 (26%), Gaps = 41/230 (17%)

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
             +  + +    G        L    ++        NF     +     + +        
Sbjct: 261 SGEKRRCLLEWEGEGSPPLPLLKDLFASERRKAKVLNFSIAYGKTAHGLSKDWKVSLEEA 320

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           +     W      + +  +E  +  +Q                             +   
Sbjct: 321 KDTVDRWYADRPEIRKWQDEQRRQAQQ--------------------------RGYVTTI 354

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---- 619
            GR     D   +R+          R            +Q  + DI    M+   +    
Sbjct: 355 LGRRRQLPDAALSRN--RAAQSHALRAAINTP------IQGSAADIATAAMLRINEDEAL 406

Query: 620 --AGYDIVLTVHDEIVCETP-DTDEFNASMLYHLMTSNPSWAKGLPLKAE 666
              G+ ++L VHDE++ E P +T E     +   M S  +     PL  +
Sbjct: 407 QSMGWRLLLQVHDEVILEGPRETAELARERVVACMRSPFTGLGPKPLLVD 456


>gi|291532674|emb|CBL05787.1| DNA polymerase I-3'-5' exonuclease and polymerase domains
           [Megamonas hypermegale ART12/1]
          Length = 215

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 79/292 (27%), Gaps = 88/292 (30%)

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A M+ ++  + AF   +D++  T A+ F V   +VT + R   K +   +         
Sbjct: 1   MAHMSEDKHFIDAFCHNQDIHTATAAQVFKVPIDEVTSELRGKAKAVNFGII-------- 52

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                  G++                                  A               
Sbjct: 53  ------YGIS------------------------------AFGLAKNLHISPKEAGEYID 76

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
            + Q+ S V    +E+ +   Q                          +  +    GR  
Sbjct: 77  NYLQECSGVKNFMHEIVEKAHQ--------------------------DGFVTTLFGRRR 110

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA------TKAGY 622
               + ++            R            +Q  + DI+   M  A       K   
Sbjct: 111 YLPAIKSSNF---NQRALAERMAMNTP------IQGTAADIIKIAMNRASEAIKEAKLKS 161

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAEGYESKRY 673
            I+L VHDE+V E    +    S +    M +  S    +PL  +    K +
Sbjct: 162 RILLQVHDELVLEVVKEEIEKVSEILTTAMQNTAS--LKVPLIIDINYGKNW 211


>gi|270585837|ref|ZP_06221408.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270318509|gb|EFA29597.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 141

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 6/143 (4%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH- 250
           +   G  +D       +  +    T L+++  +L      +    ++L+  LF + GL  
Sbjct: 1   MERTGVLIDSDALFMQSNEIASRLTALEKQAYALAGQP-FNLASTKQLQEILFDKLGLPV 59

Query: 251 ---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
                    +T + VL           ++       S+      + L + +NS      T
Sbjct: 60  LQKTPKGAPSTNEEVLEELAYSHELP-KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHT 118

Query: 308 LQFLGASRTGRWSGCVFPPQNLP 330
                 + TGR S      QN+P
Sbjct: 119 SYHQAVTATGRLSSSDPNLQNIP 141


>gi|282598885|ref|YP_003358435.1| N4 gp39-like protein [Pseudomonas phage LIT1]
 gi|259048645|emb|CAZ66294.1| N4 gp39-like protein [Pseudomonas phage LIT1]
          Length = 871

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 73/584 (12%), Positives = 143/584 (24%), Gaps = 120/584 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK---- 58
            +  D E  S              D  +    F +++H      C +  ++    K    
Sbjct: 185 EISCDIEGFSLS----------MFDSGIATIGFAWNEHDAVQIQCDYREMIQDENKHHGY 234

Query: 59  --EALENTDVTIVA----------HNSYFERTVLKA-------------CFNLDIPIHRW 93
                E  +V              H +  +  VL                  L+I   R 
Sbjct: 235 YEPNAEMREVLKWFFTEYPGRIIYHRANHDVKVLIYTLFMEHDLDKEGMHRGLEIMTPRM 294

Query: 94  ICTLVLARSN-----GLPSALKAVGEAL-------KLSSQKMEEGKELIARFCKGETHEC 141
             T ++A         +  +LK +G+          +   ++    +L+           
Sbjct: 295 DDTKIIAYLALNSTADVSYSLKDLGQEHAGNWAQDDIKDIRLITLDDLMKYNAVDAVTTV 354

Query: 142 LYDRNKPNHREAWRLFGEYCKG-----DVTVTREIFKRLEPLSSKEQELWYL--DQTIND 194
                        +    Y        D+ +  E+           +    L   +    
Sbjct: 355 WVKNKYYPIMVQDQQDALYHGLFKDSLDLIIQMELVGMPMNPRKITEVNTELNNLRDGYH 414

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESL------TYGLVSSSRCLEKLKTWLFLETG 248
                  A+A     I   E  K + +L+++         +  +     ++   L     
Sbjct: 415 NTVMSHPAVAKVEVLIQTSEMEKANAKLKTIQHPLSKFSHIRFNPNSGPQVARLLHEVLD 474

Query: 249 LH----LEDLTETTCQRVLSSN-----KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           L           +T    L         +     IQ   +     +     +        
Sbjct: 475 LPVLDVTATKQPSTSGGTLKKLLNHIKAEPYKDLIQALMDLGAVEKVISAFMPAFKAGRM 534

Query: 300 SDGR---LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                  L G+   LG + +GR S      QNLP  S   +                   
Sbjct: 535 KADGMMYLHGSFN-LGGTISGRLSSSDPNLQNLPAGSTYGK------------------- 574

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  V+S   A  G     AD A +E R+ A +  +  K+K +  G D +       
Sbjct: 575 ------LVKSLFCAPPGFLFGGADFAALEDRINALLTQDPNKIKVYTDGYDGHSMRTFAF 628

Query: 417 FN-------------VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           +               +  +V  D R+  K     L Y G       M     +  +   
Sbjct: 629 WPDKCDGIVDTVDSINSIQKVYPDLRSKAKTPHFLLQYGGSW-----MGLVRQVGFSDEE 683

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                 +  + +  +  +     +   +    +L          
Sbjct: 684 AQEIETNYNKLYRVSNEWVAGEIDKATKTGYVELAFNLRLRTPL 727


>gi|212695717|ref|ZP_03303845.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677390|gb|EEB36997.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 210

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 70/284 (24%), Gaps = 88/284 (30%)

Query: 396 QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
           +   +AF    D++  T +  F+    +VTK QR+  K +   + Y              
Sbjct: 3   KKMQEAFSHDIDIHTKTASEVFDTPIDEVTKLQRSEAKAVNFGIIYGIS---------DY 53

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           GL+                                             +   + +   + 
Sbjct: 54  GLS-----------------------------------QNLNIPRKRAKEYIENYLNTYP 78

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
           ++ +   ++ +  ++                             +     R     ++ +
Sbjct: 79  QIKKYMKDIVKKAKE--------------------------EGFVNTIFNRRRYVPEINS 112

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM------NATKAGYDIVLTVH 629
                        R            +Q  + DI+   M+         K    IVL +H
Sbjct: 113 KNF---NVRSFGERVA------LNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIH 163

Query: 630 DEIVCETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKR 672
           DEI+ E    D   A  +    M         +PL  +      
Sbjct: 164 DEIIIEASKKDLTKAKEILKSSMEEAVK--LKVPLLVDIDSGDS 205


>gi|290998603|ref|XP_002681870.1| predicted protein [Naegleria gruberi]
 gi|284095495|gb|EFC49126.1| predicted protein [Naegleria gruberi]
          Length = 1648

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 78/641 (12%), Positives = 180/641 (28%), Gaps = 120/641 (18%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            +++K  L++     +      ++T L   ++L +     +  ++         +      
Sbjct: 1067 KIVKRMLQDKRKPKLTFGFKKQQTRLLQAWDLIVK-DPVLDPMIGDWVQHPDDS------ 1119

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDR--NKPNHREAWRLFGEYCKGDVTVTREIF 172
                 ++K  E   L              D+        + W +          +  E+ 
Sbjct: 1120 ----DNEKTLEEIYLKYFPSDSFLFTPKNDKFVIVKTASQCWPIMT--AVMVSIINLEL- 1172

Query: 173  KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                 +   E     +  T+   G   +        +++D +  ++ ++L SL       
Sbjct: 1173 ---RQMFEFEMSFSKVLSTMEHNGIRFNYHWIKHNTKLIDAKLDEITRDLNSLQILDGKK 1229

Query: 233  SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRASRSAVL 289
                      L L   L L+     T + +L   KKL P     ++  +           
Sbjct: 1230 IDVSNNDHVALLLFDKLKLKGTERKTNKEILEKLKKLYPDKSYIMKQISEYRYLLNIKTH 1289

Query: 290  KLNTLVEAM--NSDGRLRGTL--QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
             +  +   +    D +       Q    S TGR S      QN+P               
Sbjct: 1290 HIQNMPNDIKYCPDTQEYRIFASQMQTTSATGRLSVKNPNLQNIP--------------- 1334

Query: 346  LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA-FET 404
                I        II+  +RS  I   G  +V  D   IE R+LA ++ ++        T
Sbjct: 1335 NDIDIKDPFSQKSIITLSIRSAFIPRNGYVMVSIDYKNIELRILAHLSQDRTLSDILSNT 1394

Query: 405  GEDLYVTTYARSFNVAPAQVTK-DQRAIGKVMELALGYQGGAKAFQ---------KMAST 454
              D++       +N  P +      R++ K +   + Y  G++                 
Sbjct: 1395 ERDIFEEIARNFWNFRPEEPVPLSHRSLVKQIIYGISYCMGSETLSGKMFNSENEDFMLR 1454

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
             G +           +  E+++  + +  +++ +  E    +                  
Sbjct: 1455 PGEDRIEA-AERYKQNFFEKYQGLKQYKDFVENHLVEKHYVETSYSR------------- 1500

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                   +++        ++     A +R  +  V      + + +++            
Sbjct: 1501 ---KRFIHDI------CSDDSSKRAAARRAALNTVSQGSASDIMKIVML----------- 1540

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVC 634
               S++    ++  R Y                      M+          L +HDE++ 
Sbjct: 1541 GIYSFMRHFNKKEERAY----------------------ML----------LQIHDELLF 1568

Query: 635  ETPDTDEFNASML-YHLMTSNPSWAKGLPLKAEGYESKRYR 674
            E  +           ++M +       +PL  +      + 
Sbjct: 1569 EVREDSLSTFIYCTKNIMQNTDKKLL-VPLPVKVQIGDSWG 1608


>gi|281416182|ref|YP_003347917.1| DNA polymerase [Vibrio phage N4]
 gi|237701489|gb|ACR16482.1| DNA polymerase [Vibrio phage N4]
          Length = 678

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 110/772 (14%), Positives = 184/772 (23%), Gaps = 197/772 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKE 59
           M  L  D ET   +D      C +  D       +   +      WD        + L E
Sbjct: 1   MKLLISDIETNGLLDTVDKFHCSWTVD-------YFTGEWKAYRPWDF---EQYIKDL-E 49

Query: 60  ALENTDVTIVAHN-SYFERTVLKA----CFN--LDIPIHRWICTLVLARSNGLPSALKAV 112
           A       IV HN   ++   LK      F   L+IP    + TLV++R     S LK  
Sbjct: 50  ACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKRNVLDTLVMSRLL--HSNLKDT 107

Query: 113 GEAL---KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
              L      + K+     L A   +    +  Y   +    E      +YCK DV VT 
Sbjct: 108 DAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWIEFNEPMMDYCKQDVQVTL 167

Query: 170 EIFKRLEPLSSKE--------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           ++F++    +                  E  +L       GY  D   A  L   V   R
Sbjct: 168 KLFEKFMSDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227

Query: 216 TKLDQELESLTYGLVSSSRCLE-----KLKTWLFLETGLHLEDLT-------ETTCQRVL 263
            ++  EL              +     K    L     +             + T  + L
Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTL 287

Query: 264 S-SNKKLTPQA---------IQVFNNRMRASRSAVLKLNTLVEAMNSDG----------- 302
              +   TP             +                     ++ D            
Sbjct: 288 YLKDAPFTPIQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLVP 347

Query: 303 -----------------RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                            +L G L     +      G     Q  P  + +        TH
Sbjct: 348 EEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYIHGQVNPNGAVTGRA-----TH 402

Query: 346 LPTSITSDPDPLQIISDCVRSCVIAS--------EGKKLVVADLAGIEARVLAWMAGEQW 397
              ++   P   +      RS   A         +    V  D +G+E R L     +  
Sbjct: 403 SYPNLAQVPSIRKYKGVECRSLFGAEHHRDYHTGKPWIQVGVDASGLELRCLGHFMAKFD 462

Query: 398 KLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +   T  +  + T  +    +             K       Y  GA+   ++    G
Sbjct: 463 DGEYINTILNGDIHTQNQIAAGLPTRDN-------AKTFIYGFLYGAGAQKIGEIVGKFG 515

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                                            + K + +    
Sbjct: 516 EEGKKAGA----------------------------------------ELIKKFLENTPA 535

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           ++ L  ++  A  +  +        K +               +    GR +  R     
Sbjct: 536 IASLREQVADALIKEAKWVGGTQQIKWKRK------------WIKGLDGRKVHVRSPHA- 582

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYD--------I 624
                                   ++Q+    I  + ++        AGY          
Sbjct: 583 --------------------ALNTLLQSAGALICKKWIVEWDKGMQAAGYKHGWDGDYCF 622

Query: 625 VLTVHDEIVCETP--DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673
           +  VHDE        +  E    +    M      W    PL  EG     +
Sbjct: 623 MAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPLDTEGKIGANW 674


>gi|237651508|ref|YP_002898979.1| DNA polymerase [Roseophage EE36P1]
 gi|220898140|gb|ACL81397.1| N4 DNA pol-like protein [Sulfitobacter phage EE36phi1]
          Length = 876

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 91/742 (12%), Positives = 183/742 (24%), Gaps = 179/742 (24%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDPVMPQVL 57
           M   L  D E  S   L          D  +    F +D  +      D         VL
Sbjct: 178 MDVDLTCDIEGFS---LKHY-------DAGIGTITFCWDQHNGIAFEVDNTQTKAEDHVL 227

Query: 58  KEAL-------ENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTL 97
           ++AL         T    + HN  ++  VL                  LD+ +  W CT 
Sbjct: 228 RQALKTFFYRYRATGRRTIYHNICYDAYVLIYQLFMDHILDQEGLLEGLDVMLENWECTQ 287

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           ++       +     G  L L +Q             +        +  +   +      
Sbjct: 288 LITYL----ATNSCAGNELGLKAQ------------AQEFAGNYAVEDIQDITQIELAKL 331

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQEL----------WYLDQTINDRGYCVDVALAHTL 207
            EY   D   T  ++ +       +Q+                 +   G  V++     L
Sbjct: 332 LEYNLVDGLSTWYVYNKHYQTMINDQQYEIYTGLFKDAVKDIIQMQLTGLPVNMDKVIKL 391

Query: 208 NQIVDVERTKLDQELESLTY------------------------------------GLVS 231
           N  +  E      ++                                          +  
Sbjct: 392 NNQLGAESEHNVWKMMQTKIVQGFVYQLEEDALKKKNEKLKTKVVTRADLGSTQDLMVAF 451

Query: 232 SSRCLEKLKTWLF--LETGLHLEDLT----ETTCQRVLSSN-----KKLTPQAIQVFNNR 280
           +     +L+  L+     GL + DLT     +T    L         + T + + +    
Sbjct: 452 NPGSAPQLQRLLYSDEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEY 511

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTL--QFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
             ++      L   ++A               LG + +GR S      QN+P        
Sbjct: 512 KASAIILSTFLPAFLKACPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIPS------- 564

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                       ++       ++  ++ C  A  G   V  D   +E R+ A    +  K
Sbjct: 565 ------------SAGGPLKSRLAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEK 612

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           LK +  G D +       F      +                                 +
Sbjct: 613 LKVYTDGYDGHSLRAYGYFGDQMPDIDP------------------------------SS 642

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +++   + K      +   A  F    Q       +   F     + ++  +++ +    
Sbjct: 643 VDSINSIAKKYKPLRQESKAPTFALTYQGTFHTLMVNCGFSKEKAQDIENKYKKMYKVSI 702

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E    + +  EQ   +G   +A   R    +  +           +            R+
Sbjct: 703 EF---VEKKLEQATRDGYITVAFGLRVRTPLLAQTILGTNKTPKEA--------AAEGRT 751

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
             N   +      +             + + + +  ++  K        +HD       D
Sbjct: 752 AGNAMGQSYCMLNSRA-----------ASEFMKKVRVSKHKLDIKPCAHIHDAQYYLVRD 800

Query: 639 TDEFNASMLYHLMTSNPSWAKG 660
                   L   +    +W   
Sbjct: 801 GAYEALMFLNEHLPKAVAWQDD 822


>gi|289674484|ref|ZP_06495374.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5]
          Length = 141

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 43/173 (24%), Gaps = 44/173 (25%)

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
             +  ++  V            +                             +    GR 
Sbjct: 2   DRYFARYPGVLNYMERTRAQAAE--------------------------QGFVETIFGRR 35

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------AG 621
           L   D+        +  +   R            +Q  + DI+ + M+            
Sbjct: 36  LYLPDINAKNQ---SLRKGAERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLD 86

Query: 622 YDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
             ++L VHDE+V E  +         +   M+     A  +PL  E      +
Sbjct: 87  ARVILQVHDELVLEVREDLVDQVSEQIRPHMSGAAQLA--VPLLVEVGVGNNW 137



 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/89 (8%), Positives = 20/89 (22%), Gaps = 5/89 (5%)

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
            +     +    N+    +    E    +   G             +++   L     + 
Sbjct: 1   ADRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLP-----DINAKNQSLRKGAERM 55

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  G A    K+  V +     +  
Sbjct: 56  AINAPMQGTAADIIKKAMVAVNGWLDESG 84


>gi|289806032|ref|ZP_06536661.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 142

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---- 256
            A+ H  ++ + +   +L+++   +      +    ++L+T LF + G+     T     
Sbjct: 1   PAVLHKHSEEITLRLAELEKKAHDIAG-EAFNLSSTKQLQTILFEKQGIKPLKKTPGGAP 59

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
           +T + VL       P    +   R   ++      + L   +N       T      + T
Sbjct: 60  STSEEVLEELALDYPLPKVILEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTAT 118

Query: 317 GRWSGCVFPPQNLPRPSRSHEELD 340
           GR S      QN+P  +     + 
Sbjct: 119 GRLSSTDPNLQNIPVRNEEGRRIR 142


>gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K]
 gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K]
          Length = 1072

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/636 (11%), Positives = 148/636 (23%), Gaps = 190/636 (29%)

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L    ++  L+         +       +    +   N         L   Y  GD  V
Sbjct: 451 GLSDYAKSYTLN----TAINLINEYRDVKDVVNDIDGGNFNYDWFPIELMHPYASGDTDV 506

Query: 168 TREIFKRLEPLSSKEQELWYL-------------DQTINDRGYCVDVALAHTLNQIVDVE 214
            R I   +     ++     +                I   G   D+      ++  + E
Sbjct: 507 CRRIHCDVIKKLKEQDRPKSMHLLEVNYPRLTKSLARIESNGLYCDLDYMKENDESYESE 566

Query: 215 RTKLDQELESLTYGLVSS----------------------------------------SR 234
             K    +                                                    
Sbjct: 567 MAKNHATMREHWAVKEFEEYQYNLYQMALEEHEKKPKDRDKDIHQYRDKFKDGKWMFSPS 626

Query: 235 CLEKLKTWLFLETG--LHLED---LTETTCQRVLS----------------------SNK 267
             +     ++   G  L  +      +     V                          K
Sbjct: 627 SGDHKGRVIYDILGIQLPYDKEYVKEKPFNANVKEADLTWQDYKTDKKAIGYALDNLELK 686

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
               + +++                 L+  +N   R          + T R S      Q
Sbjct: 687 DDVKELLELLKYHASMQTKRNSFTKKLLNMINKQKRTLHGSFSETGTETSRLSSSNPNLQ 746

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEA 386
           NLP  +    + D                       ++   ++  E   L+ +D + +E 
Sbjct: 747 NLPAHTSDVNKFD-------------------YKHPIKRSFVSRFENGVLLGSDYSALEM 787

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R++     +   L++F  GED++  T +  +N    +VTK++R               A 
Sbjct: 788 RIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQ--------------AT 833

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
                    G +  +FA       +                                E +
Sbjct: 834 KAVNFGLAFGESPFSFAGKNNMEVS------------------------------EAEEI 863

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            + + Q    V    + +H+  +Q    G        R                      
Sbjct: 864 FEKYFQTKPSVKTSIDNVHEFVQQY---GYVDTMHGHRRF-------------------- 900

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKA 620
                 + + +S       +  R+          I+Q     +    +      + +   
Sbjct: 901 ------IRSAQSTDKKIKNEGLRQS------FNTIIQGSGSFLTNMSLTYLDDFIQSRNL 948

Query: 621 GYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655
              ++ TVHD I+ + P  +    + +  H+M + P
Sbjct: 949 KSKVIATVHDSILIDCPPEEAKIMAKVTIHIMENLP 984



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 45/179 (25%), Gaps = 35/179 (19%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----------VHDPVMPQ 55
           D ET S     K G          ++ +  + +                        + +
Sbjct: 220 DLETNSLKP-DKEGSKP-------LVLSLSWRNGQGVTIPLYKSDFNWENGQDDIDEVLE 271

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS-----NGLPSALK 110
           +LK  L + +   VAHN  ++   L +  N          T V               L 
Sbjct: 272 LLKNWLASKEDIKVAHNGKYDIKFLMSTENFK-DFESIQDTKVGWYLAVTQEVKESLRLS 330

Query: 111 AVGEALK--------LSSQKMEEGKELIARFCKGETHECLYDRNKP--NHREAWRLFGE 159
            +   +         L   K+    +L+  F          ++      +      + E
Sbjct: 331 DLAYEVTDVGGYDKPLEDFKLWFVTKLLRFFSDKIKEIQKENKKIAKKEYDVKAPEYKE 389


>gi|18640489|ref|NP_570330.1| DNA polymerase [Synechococcus phage P60]
 gi|18478719|gb|AAL73268.1| DNA polymerase [Synechococcus phage P60]
          Length = 587

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 79/525 (15%), Positives = 130/525 (24%), Gaps = 129/525 (24%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  L  D ET   I       C  A D          D      +D   D    +   E 
Sbjct: 1   MK-LAFDIETDGLIPDLTIIHCIVARD---------IDTDEEFRFDGTGDYPSIKEGLEL 50

Query: 61  LENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS----------------- 102
           L +    +  HN   ++   ++       P      TL+L+R                  
Sbjct: 51  L-SKADELWGHNIVNYDYPAIQKLHPDWTPPSCTRDTLILSRLFFTDLLDRDFRSRPALM 109

Query: 103 ---NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   +L+A G  L     K E GK L   +                         E
Sbjct: 110 PGNLYGRHSLEAWGHRLGH--HKSEFGKSLEGDWSTYSP-----------------EMLE 150

Query: 160 YCKGDVTVTREIFKRLEPLS-------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           YC  DV V+  + K   P           E E+  +       G+  DV  A  L   + 
Sbjct: 151 YCARDVEVSVALAKTFVPKIPEYQWSVDTEHEIARIMSWQEQMGFPFDVRAAQALEGKLR 210

Query: 213 VERTKLDQELESLTYG--------------------------LVSSSRCLEKLKTWLFLE 246
           +E   L  ++    +                              +      +       
Sbjct: 211 LELDTLSDDMRETFHFVDGGVMTPKRSNKVRHYFENAPFCKLREFNPTSRHHIAWAFEHH 270

Query: 247 TGLHLE----DLTETTCQRVLSSNKKLTPQA-IQVFNNRMRASRSAVLKLNTLVEAMNSD 301
            G   +             +L         A  ++   +    + +  K N  ++     
Sbjct: 271 RGWEPKERTAGGQPKIDDEILREINTKESLAFARILELQKHLGQLSEGK-NAWLKLERK- 328

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GRL  +      + TGR +        +P                               
Sbjct: 329 GRLHHSCVLN--TNTGRQAHMRPNLAQVPSAHEY-------------------------- 360

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              RS    S+    V +D +G+E R L           +   G            + A 
Sbjct: 361 ---RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTAL 410

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
           A++    R  GK +   L Y GG       A  +  + +     +
Sbjct: 411 AEIYGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 455


>gi|313892512|ref|ZP_07826101.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
 gi|313119091|gb|EFR42294.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E]
          Length = 626

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 95/743 (12%), Positives = 192/743 (25%), Gaps = 195/743 (26%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVELWDCVHDPVMPQVLKEALE 62
           L  D ET   +D T            +   +     +  V+ +         Q L   + 
Sbjct: 2   LIFDIETNGLLDTTT----------QIHCMSILDTHNLEVQAYRPWEIKEGIQRLMHEIN 51

Query: 63  NTDVTIVAHNS-YFERTVLKACFNLDIPIHR-----WICTLVLARSNGLPSALKAVGEAL 116
           N   TI  HN   F+   ++  +  +  I +      I TLV+AR        + +    
Sbjct: 52  NDG-TICGHNIISFDIPAIEKLYPKEFHIQKEKHTHIIDTLVMARLLNSNIQEQDLIRYR 110

Query: 117 KLSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
           K        G   L A   +    +  Y  +     E +     EY K DV VT  ++K 
Sbjct: 111 KKELAGNLIGSHSLKAYGHRLGILKGTYAEDNEEAWEVYNEDMLEYNKQDVRVTYALYKS 170

Query: 175 LEPLSSKE-------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES--- 224
            +              +  +L   + + G+  D+  A  L + +     ++D ++ +   
Sbjct: 171 FQDRIKGMEQAILLEHKAQWLMTKMEENGFPFDIPDALKLVKTLRQRAEEIDTQISAVVP 230

Query: 225 -----------------------LTYGLVSSSRCLEKLKTWLFLETGLHLED-------- 253
                                  +      +    ++++           +         
Sbjct: 231 KIPDKVFTPKRDNKRLGYKKGVPIQRYKPFNPNSRQQIEWIFRTHYNYTPDKADLYTEEG 290

Query: 254 --LTETTCQRVLSSNKKLTPQAIQV---FNNRMRASRSAVLKLN---TLVEAMNSDGRLR 305
               + +    +  ++K    A ++   F  R+   +      +     ++ + SDG++ 
Sbjct: 291 RLKIDESTFEYIEKDEKAPQGAKKIAPLFEERLMLCKRLGQLADGKQAWLKHVKSDGKIH 350

Query: 306 GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
           G +   G + TGR +        +P                               +  R
Sbjct: 351 GRVNPNG-TVTGRATHSNPNVAQVP------------------------HVGTPYGEECR 385

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
                 +G      D  G+E R LA       K K        +   +            
Sbjct: 386 KLFNVPQGWTQAGIDACGLELRCLAHYLSPYDKGKYA------HEVVHGDIHTSNQKAAG 439

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R + K    A  Y  G                                         
Sbjct: 440 LATRNLAKTFIYAFLYGAG----------------------------------------- 458

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
                             + +KK + +    +  L  ++ +A  +T    + I  +++  
Sbjct: 459 ---DLMIGELVGGKEKEGKAIKKKFFKATPSIKLLKEDIEKALIKTRIYNRKIQWKRK-- 513

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
                         L    GR L  R + +                         ++Q+ 
Sbjct: 514 -------------YLRGLDGRKLYVRSIHS---------------------ALNLLLQSA 539

Query: 606 SRDILAEGMM----NATKAGYD--------IVLTVHDEIVCETPDTDEFNA--SMLYHLM 651
              I    ++      T+ GY         ++  VHDE        +  +         M
Sbjct: 540 GALICKYWIVRTEERLTQRGYKHGWNGDFVLMAWVHDEGQYACRTEEIADVVIHEAQEAM 599

Query: 652 TSNPS-WAKGLPLKAEGYESKRY 673
                 +   + L  EG + K +
Sbjct: 600 RDTQKHFKFRVQLDTEGKKGKNW 622


>gi|325842751|ref|ZP_08167786.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
 gi|325489551|gb|EGC91916.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1]
          Length = 330

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/450 (14%), Positives = 127/450 (28%), Gaps = 128/450 (28%)

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +    ++LK  L  E G+ +  +     +  L           ++     + ++     
Sbjct: 4   DNLNSSKQLKQSL-QEMGIPVTSVQ----EGKLKLFSSKYSIVDEIVRY-KKYNKLVTTY 57

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            + L   ++ DGRLRG    +G ++T R S      Q++P+                   
Sbjct: 58  GDKLKNQLSKDGRLRGHWNLIG-TKTSRMSCQKPNFQSIPK------------------- 97

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                        ++    A E    ++ D + IE R+LA +   Q  + AF  G DL+V
Sbjct: 98  ------------EMKKYFQAEEENVFIIMDYSTIELRILAEITNCQKLIDAFNAGADLHV 145

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
            T     N     ++  +R +GKV+   L Y       ++                    
Sbjct: 146 ETAKAILNQ--ESISDSERKLGKVVNFGLIYGLTPFGLKE-------------------- 183

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                                            E     + + +  V++   +   +   
Sbjct: 184 ------------------KINAIPGFNISEYKAEEFIANYFKMYPEVAKYQQQQQYS--- 222

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                               + + K          R                        
Sbjct: 223 ----DIITTLGGSYWDNTNGLDRLKP---------RQRY--------------------- 248

Query: 591 YTYGGKLTENIVQAVSRDILAEGMM---NATKAGYDIVLTVHDEIVCETPDTDEFNASM- 646
                      VQA   + L E +       +  + +V  +HDEI+ E P+T+   A   
Sbjct: 249 --------NYAVQASCAEGLKESLALFCKLKQDKWKLVSAIHDEIIIEVPETEALTAKEC 300

Query: 647 LYHLMTSNP-SWAKGLPLKAEGYESKRYRK 675
           L   M        K +P++     SK ++K
Sbjct: 301 LKQAMIDGMGKLVKKIPIEVSVNISKTWKK 330


>gi|237651592|ref|YP_002899062.1| DNA polymerase [Roseophage DSS3P2]
 gi|220898062|gb|ACL81320.1| N4 DNA pol-like protein [Silicibacter phage DSS3phi2]
          Length = 876

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 92/746 (12%), Positives = 177/746 (23%), Gaps = 187/746 (25%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDPVMPQVL 57
           M   L  D E  S   L          D  +    F +D  +      D         VL
Sbjct: 178 MDVDLSCDIEGFS---LKHY-------DAGIGTITFCWDQHNGIAFEVDNTKTKAEDHVL 227

Query: 58  KEAL-------ENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTL 97
           ++AL         T   ++ HN  ++  VL                  LD+ +  W CT 
Sbjct: 228 RQALKTFFYRYRATGRRMIYHNICYDAYVLIYQLFMDHILDQEGFLEGLDVMLENWECTQ 287

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           ++       +     G  L L +Q             +        +  +   +      
Sbjct: 288 LITYL----ATNSCAGNELGLKAQ------------AQEFAGNYAVEDIQDITQIELPKL 331

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTL 207
            EY   D   T  ++ +       +Q          +       +   G  V++     L
Sbjct: 332 LEYNLVDGLSTWFVYNKHYQTMINDQQFEIYTGLFKDAVKDIIQMQLTGLPVNMDKVIKL 391

Query: 208 NQIVDVERTKLDQEL----------ESLTYGLV--------------------------S 231
           N  +  E      ++            L    +                           
Sbjct: 392 NDQLGAESEHNVWKMLQTKIVQGFVYQLEENALKKKNEKLKTKVVTRVDLGSTQDLMVAF 451

Query: 232 SSRCLEKLKTWLF--LETGLHLEDLT----ETTCQRVLSSN-----KKLTPQAIQVFNNR 280
           +     +L+  L+     GL + DLT     +T    L         + T + + +    
Sbjct: 452 NPGSAPQLQRLLYSDEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEY 511

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTL--QFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
             ++      L   ++A               LG + +GR S      QN+P        
Sbjct: 512 KASAIILSTFLPAFLKACPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIPS------- 564

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                       ++       ++  ++ C  A  G   V  D   +E R+ A    +  K
Sbjct: 565 ------------SAGGPLKSRLAKLIKKCFEAPPGWLFVGLDFDSLEDRISALQTKDPEK 612

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           LK +  G D +       F      +                                 +
Sbjct: 613 LKVYTDGYDGHSLRAYGYFGDQMPDIDP------------------------------SS 642

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           +++   + K      +   A  F    Q       +   F     + ++  +++ +    
Sbjct: 643 VDSINSIAKKYKPLRQESKAPTFALTYQGTFHTLMVNCGFSKEKAQDIENKYKKMYKVSI 702

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
           E    + +  EQ   +G   +A   R    +  +                          
Sbjct: 703 EY---VEKKLEQATRDGYITVAFGLRVRTPLLAQTILGTNKT----------PKEAAAEG 749

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVC 634
                    +         +E              M        K        +HD    
Sbjct: 750 RTAGNAMGQSFCMLNSRAASEF-------------MKKVRASKHKLDIKPCAHIHDAQYY 796

Query: 635 ETPDTDEFNASMLYHLMTSNPSWAKG 660
              D        L   +    +W   
Sbjct: 797 LVRDGAYEALMYLNEHLPKAVAWQDD 822


>gi|313813473|gb|EFS51187.1| hypothetical protein HMPREF9587_01282 [Propionibacterium acnes
           HL025PA1]
          Length = 112

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET SP  L K G+  YAE  D  +++F +  D  PVE+ D      +P  + 
Sbjct: 1   MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERT----VLKACFN-----LDIPIHRWICTLVLAR 101
            AL +  V   AHN+ FER      L+  +        +   +W CT+V + 
Sbjct: 61  AALVDPGVVKWAHNAAFERVALSAWLQRHYPELLAAGFLDPSQWRCTMVWSA 112


>gi|194901634|ref|XP_001980357.1| GG17101 [Drosophila erecta]
 gi|190652060|gb|EDV49315.1| GG17101 [Drosophila erecta]
          Length = 2037

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 88/668 (13%), Positives = 187/668 (27%), Gaps = 125/668 (18%)

Query: 30   VILFAFGFDDHPVELWDCVHDPVM----------PQVLKEALENTDVTIVAHNSYFERTV 79
            +   +F   D+     +  +D              Q L + L   D+T+V H+   +  +
Sbjct: 1465 ISGVSFSLADNVAYYMNMQNDGRATGQGVPTILKVQELCKLLARKDLTLVMHDGKEQLKM 1524

Query: 80   LKACFNLDIPI-HRWICTLVLARSNGLPSAL--KAVGEALKLSSQKMEEGKELIARFCKG 136
            L         I  +     V          +    +            E   L      G
Sbjct: 1525 LLKAIPQLQKISAKLEDPKVANWLLQPDRTMSFADMCRTF------APECTALADICGSG 1578

Query: 137  ETHECLYDRNKPNHREAWRLFGEYC------KGDVTVTREIF--KRLEPLSSKEQELWYL 188
              +      +        R   E C      KG       I   + L+     E  L   
Sbjct: 1579 RGYSSYGLDSASAILPKIRTSIEACVTVHILKGQTENLGRIGSGQLLKFFHDLEMPLQLT 1638

Query: 189  DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
               +   G+     L   L Q +     KL+ ++         +    + +   L L   
Sbjct: 1639 LCHMEFVGFPAQQQLLQQLYQKMVAVVRKLETKIFEQHGSR-FNLGSSQAVAKVLGLHRK 1697

Query: 249  LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            ++       T ++VL      TP +  +   R + +      +  L++   +D   R   
Sbjct: 1698 INGRVT---TSRQVLEKL--NTPISHMILGYR-KLAGLLAKSIQPLLKCCQAD---RIHG 1748

Query: 309  QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
            Q +  + TGR S      QN+ +                            ++   R   
Sbjct: 1749 QSITYTATGRISMAEPNLQNVAK------------------EFCIQVGSDAVNISCRLPF 1790

Query: 369  -IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
             +  E + L+ AD   +E R+LA ++ ++  LK   + +DL++   A    +  ++V+++
Sbjct: 1791 MLKDEDRCLLSADFCQLEMRILAHLSQDKGLLKVMNSSQDLFIAIAAHWNKIEESEVSQN 1850

Query: 428  QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
             R   K +   + Y  G ++  +      LN +     + +    + +     +   + +
Sbjct: 1851 LRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEEEARLISEQFHQAYTGIREYTMRVVK 1905

Query: 488  NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                    +   G          R+    ++     L    E+         A       
Sbjct: 1906 FARNQGFVETITGR---------RRYLDNINSDQEHLKNQAER--------QAINSTIQG 1948

Query: 548  LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                      L +     R      +G+                                
Sbjct: 1949 SAADIAKSAILKMEKNLERYRDKLGLGDKSV----------------------------- 1979

Query: 608  DILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGLPLKAE 666
            D++             + L  HDE++ E P       + +  + M +       +PL+ +
Sbjct: 1980 DLV-------------MHL--HDELIFEVPAAKSKKIAKVLSVTMQNCVK--LTVPLQVK 2022

Query: 667  GYESKRYR 674
                + + 
Sbjct: 2023 LRIGRSWG 2030


>gi|315106932|gb|EFT78908.1| hypothetical protein HMPREF9601_00873 [Propionibacterium acnes
           HL030PA1]
          Length = 112

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + ID ET SP  L K G+  YAE  D  +++F +  D  PVE+ D      +P  + 
Sbjct: 1   MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLD---------IPIHRWICTLVLAR 101
            AL +  V   AHN+ FER  L A              +   +W CT+V + 
Sbjct: 61  AALVDPGVAKWAHNAAFERVALSAWLQRHHPELLAAGFLDPSQWRCTMVWSA 112


>gi|50725504|dbj|BAD32974.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
 gi|50725832|dbj|BAD33362.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group]
          Length = 551

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 85/345 (24%), Gaps = 82/345 (23%)

Query: 277 FNNRMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
                   +     +  L        +GR+  +L     + TGR S      QN P    
Sbjct: 279 LCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNIN--TETGRLSARTPNLQNQP---- 332

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                 L+     +R   +A+ G  L+VAD   +E R+LA +  
Sbjct: 333 ---------------------ALEKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTN 371

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            +  L+AF+ G D +  T    +      V +                   K   +    
Sbjct: 372 CKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQ 413

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G +      L     A        NF     +     + +            K W +  
Sbjct: 414 PGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDR 473

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             VS    +      +  E                               GRS  + ++ 
Sbjct: 474 KEVSAWQKKQKAFALEKCEVY--------------------------TLLGRSRQFPNMT 507

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +             R            VQ  + D+    M+   +
Sbjct: 508 HAGPGQKGHV---ERAAINAP------VQGSAADVAMCAMLEIER 543


>gi|308516943|emb|CBW47048.1| N4 DNA polymerase-like protein [Roseovarius sp. 217 phage 1]
          Length = 874

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 87/688 (12%), Positives = 177/688 (25%), Gaps = 156/688 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH------DPVMPQVL 57
           L  D E  S   L          D  V    F ++ H    ++  +      DPV+ Q L
Sbjct: 181 LTCDIEGFS---LKHF-------DAGVGTITFCWNQHEGIAFEVDNTRTKEEDPVIRQAL 230

Query: 58  KEAL---ENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTLVLAR 101
           K        +   ++ HN  ++  VL                  LD+ +  +  T ++  
Sbjct: 231 KTFFYRFRESGRKMIYHNICYDAYVLIYQLFMDHILDQEGLLEGLDVMLENFEDTQIITY 290

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                +     G  L L +Q             +        +  K           EY 
Sbjct: 291 L----ATNSCAGNELGLKAQ------------AQEFAGNYAVEEIKDITLIDLDKLLEYN 334

Query: 162 KGDVTVTREIFKRLEPLS---------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             D   T  ++ +                 +E       +   G  V++     L++++ 
Sbjct: 335 LVDGLSTWYVYNKHYQTMITDLQLGTYENFKEWVVDIIQMQLTGLPVNMDKVVALDKLLT 394

Query: 213 VERTKLDQELESLTYGLVSS------------------------------------SRCL 236
            E      ++                                                  
Sbjct: 395 AESEHNIWKMMQTKIVQGFQYQLEEEALAKKNAKLKTKTVTRKDLGLTKDLEVAYNPGSA 454

Query: 237 EKLKTWLFLE--TGLHLEDLT----ETTCQRVLSSN-----KKLTPQAIQVFNNRMRASR 285
            +L+  L+ +   GL + DLT     +T    L         + T   +++      ++ 
Sbjct: 455 PQLQRLLYSKEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKDFLKILLEYKASAI 514

Query: 286 SAVLKLNTLVEAMNSDGRLRGTL--QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
                L   ++A               LG + +GR S      QN+P             
Sbjct: 515 ILSTFLPAFLKAHPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIPS------------ 562

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                  ++       ++  ++ C  A  G   V  D   +E R+ A    +  KLK + 
Sbjct: 563 -------SAGGPLKSRLAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYT 615

Query: 404 TGEDLYVTTYARSFNVAPAQVTK--------------DQRAIGKVMELALGYQGGAKAFQ 449
            G D +       F      +                  R   K    AL YQG      
Sbjct: 616 DGYDGHSLRAYGYFGDQMPDIDPSSVESINSIGKKYKPLRQESKAPTFALTYQGTYHTLM 675

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           +         +     +  N   + +  + ++     E         +  G         
Sbjct: 676 QNC-----GFSKEKAQMIENKYRQMYSVSIDYVNEKLEQATHDGYITVAFGL-------- 722

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
            R +   + +     ++  ++    G+       +   ++  +     +  +  S   L 
Sbjct: 723 -RVRTPLLVQTILGTNKTPKEAAAEGRTAGNAMGQSYCMLNSRAASAFMKKVRRSSHRLD 781

Query: 570 YR---DVGNNRSYLNTTTRQLTREYTYG 594
            +    + + + YL       +  Y   
Sbjct: 782 IKPCAHIHDAQYYLVRDGAFDSLVYINT 809


>gi|312377443|gb|EFR24272.1| hypothetical protein AND_11228 [Anopheles darlingi]
          Length = 2035

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/507 (12%), Positives = 132/507 (26%), Gaps = 96/507 (18%)

Query: 183  QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
              +  +       G+ VD      L + +   R ++  +   L  G          +   
Sbjct: 1603 MPVHVVLARSEVVGFPVDRTALGALIERLKASRERIATDARLLNGGRKLDFGSSRAVAAA 1662

Query: 243  LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            L L            T ++VL       P A  V   R   S  A   +  L   +    
Sbjct: 1663 LRLAASRERPR----TVRQVLERLDN--PLAALVIAYRKIDSNLART-IEPLYRTIQLSA 1715

Query: 303  RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
              R   +    + TGR +      Q +        +   +   L   +       +    
Sbjct: 1716 ESRVHGRSHCFTSTGRITMHEPNLQTV-------VKDFTVPAPLAGGMRERRTTDEEEHF 1768

Query: 363  CVRSCVIASEG-KKLVVADLAGIEARVLAWMAGEQWKLKAF------------ETGEDLY 409
              RS    ++  + L+ AD   +E  +L  ++ ++  L A                +D++
Sbjct: 1769 SCRSTFACNDTTRVLLSADFCQLELCILTHLSQDRRLLAALDGSAVADGAGSRRKPQDVF 1828

Query: 410  VTTYARSFNV-APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             +  AR   +   ++V+ + R   K +   + Y  GA+A         L +   +     
Sbjct: 1829 RSLAARWHQLGDASEVSDELRTRTKAIVYGVIYGMGARAMAAE-----LQMEEESARSLM 1883

Query: 469  NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                  + D   +   +     +    +   G          R+    + +       A 
Sbjct: 1884 EQFHRSYPDIRRYQERVIRLTRQLGYIETLTGR---------RRYLPAIGQAATADPAAR 1934

Query: 529  EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
             +          +                                    S  +     + 
Sbjct: 1935 AEAERQAVCTTIQG-----------------------------------SAADILKNAIV 1959

Query: 589  REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
            R      K           D+              +VL +HDE+V E P       + + 
Sbjct: 1960 RMERNLRKY---------ADV-------LDVGAIQLVLHLHDELVYELPRAQLPKVAKIL 2003

Query: 649  H-LMTSNPSWAKGLPLKAEGYESKRYR 674
               M +       +PL+ +      + 
Sbjct: 2004 RSSMENCAK--LSVPLRVKLKAGDSWG 2028


>gi|156122488|gb|ABU50235.1| DNA polymerase [Synechococcus phage S-CBP42]
          Length = 588

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 85/566 (15%), Positives = 143/566 (25%), Gaps = 133/566 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  L  D ET   +       C  A+D          D + V  +D   D    +     
Sbjct: 1   MR-LAFDIETDGLLRNLTKIHCIVAQD---------LDTNEVYKFDGTGDHPSIREGLAL 50

Query: 61  LENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS----------------- 102
           L++ D  +  HN   ++   +K  F           TL+L+R                  
Sbjct: 51  LKDAD-ELWGHNIIGYDFEAIKEVFPRWNYSSTVYDTLILSRLFFTDLLDRDFRSRPANM 109

Query: 103 ---NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   +L+A G   +LS  K E GK L   +                         +
Sbjct: 110 PAQLYGRHSLEAWG--HRLSVHKSEFGKSLSGDWSTYSP-----------------EMLD 150

Query: 160 YCKGDVTVTREIFKR-------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           YC  DV V+  + +             S E  L  +       G+  DVA A  L   + 
Sbjct: 151 YCARDVVVSVSLARLFTAKVAEYRDCISTEHRLATIMAWQESEGFPFDVAKAERLEGQLR 210

Query: 213 VERTKLDQELESLTYG--------------------------LVSSSRCLEKL---KTWL 243
            E  KL +++                                   +    + +       
Sbjct: 211 SELLKLSEQMRETFPYVDGGSFTPRTNNGPRGYVKGAAMCRLKEFNPTSRQHIAWAFATF 270

Query: 244 FLETGLHLEDLTETTCQR--VLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
                  L D  +       +L           ++   +    +      N  ++ + SD
Sbjct: 271 RDWEPKELTDTGKPKIDETTLLEYGTDEAKTFARILELQKHLGQL-SEGANAWLKKVESD 329

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  +      + TGR +        +P                               
Sbjct: 330 GRIHHSCVLN--TNTGRQAHMKPNLAQVPSGHEY-------------------------- 361

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R        +  V AD +G+E R L           A   G            + A 
Sbjct: 362 ---RELFHPGANRSQVGADASGLELRCLGHYL-------ARFDGGKFAKEVVQGDIHTAL 411

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A++    R  GK +   L Y GG       A       +    + K            + 
Sbjct: 412 AEIYGTDRKSGKGVTYCLIYGGGDSKLGLTA-----GASKAQAVKKGKEIRSRIMANLDG 466

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              +     E A   +  G     ++
Sbjct: 467 FAALNAAVQERAKSGVLKGLDGRPIR 492



 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 597 LTENIVQAVSRDILAEGMMN----ATKAG--YDIVLTVHDEIVCETPDTDEFNASMLYHL 650
               ++Q+    I    ++       +AG  Y  +  VHDE+      +    A  L  +
Sbjct: 500 ALNYLLQSAGAVICKLWLLRSYELLDEAGIDYFPMAFVHDEVHISVAPSQAEQAGQLIQI 559


>gi|167565000|ref|ZP_02357916.1| DNA polymerase [Burkholderia oklahomensis EO147]
          Length = 619

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 92/704 (13%), Positives = 170/704 (24%), Gaps = 203/704 (28%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------Q 55
             L  D ET   +           E   + + A G     V      HDP  P      +
Sbjct: 7   DILTWDLETDGLL----------RELTRIWVLAIGTVGSDVITTYTDHDPNYPPLMEGVE 56

Query: 56  VLKEALENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            L   +     T  AHN   F+R  L      ++P    + TLV+ R            E
Sbjct: 57  RLMAHVARGGKTA-AHNGINFDRKALAKVTGYEMPYTAILDTLVMGRLAEP--------E 107

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L         G +L +   +      +   +             YC+ D+ VT  ++K+
Sbjct: 108 RLG--------GHKLESYGIEM----GILKGSHNEWDRYSEEMRSYCEQDIAVTNALYKK 155

Query: 175 LEPLSSKEQEL-------WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           LE + +  +         + +D  +   G+ +++  A TL   +   R     E++ +  
Sbjct: 156 LERVQTWGESCDLEHTVAYLIDLQM-TNGFPLNMREAMTLAAQLWERRDGYLAEMQRVFP 214

Query: 228 G--------------------------------LVSSSRCLEKLKTWLFLETGLHLE--- 252
                                               +      +   L  + G       
Sbjct: 215 PIYVSAGAVTPKRTMKREGREYTAGAPYTKIVLQEFNPGSEYHVANRLKRKYGWRAPLTE 274

Query: 253 DLTETTCQRVLSSNKKLTPQAIQVFNN------RMRAS---RSAVLKLNTLVEAMNSDGR 303
                  + VL       P+   + +         + +   +         +   + + R
Sbjct: 275 KGNPNITEAVLKKL--DFPEVQPLLHFARVDKQWTQLASPPKKNGTGG-GWIHHADENHR 331

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           + G +   GA  TGR +       N+                                  
Sbjct: 332 VHGYVNSNGA-VTGRMTHSRPNSANI-------------------------------DKE 359

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   I S G K V  D  G+E RVLA         +      D        + +V    
Sbjct: 360 MRHIWIPSMGMKQVGCDAEGLELRVLAHYLARYDGGRLTRQLLDGDKALGTDAHSVNRDN 419

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                R   K +     Y  G               +  A  +         +    +  
Sbjct: 420 TDLFSRDGAKTLLYGSLYGAG---------------DEKAGNIWIADWRTSGKPVSEWPV 464

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
           W          + +      + +            +L  ++  A +              
Sbjct: 465 WCHVRGKLKTAKAIGRVVKAKLLDGIV-----GFRKLIKDIETAAKS------------- 506

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                           L    GR +  R                             ++Q
Sbjct: 507 -------------RGWLKGIDGRRIRVRHAHA---------------------ALNTLLQ 532

Query: 604 AVSRDILAEGMMNATKAGYDI-----------VLTVHDEIVCET 636
                I+ + +        +I           +  VHDE+  E 
Sbjct: 533 GTGAIIMKKALAIYHAEITEIHGLVHGVHFGYLANVHDEVQQEC 576


>gi|282599434|ref|YP_003358324.1| N4 gp39-like protein [Pseudomonas phage LUZ7]
 gi|259048533|emb|CAZ66183.1| N4 gp39-like protein [Pseudomonas phage LUZ7]
          Length = 875

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/596 (12%), Positives = 137/596 (22%), Gaps = 143/596 (23%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGF----DDHPVELWDCVHDPVMP 54
            L  D E  S       +   G      D   +     +    +        C  +  M 
Sbjct: 189 ELTCDIEAFSLSMFDSGIATIGFAWSQHDA--VQIQVDYQEMAEPSGGLYGYCETNEPMR 246

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTLVLAR 101
            VL+   E     ++ H + F+  VL                  L+I       T V+A 
Sbjct: 247 DVLRWFFEQYKGQLIYHKANFDVKVLIYQLYMAHDLDKVGMLRGLEIMCRGMQDTKVVAY 306

Query: 102 S-NG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                      +LK +G+                             D  K   +     
Sbjct: 307 LALNSTSSPSYSLKDLGQEH--------------------AGDWSQGDDIKDIRKIPLDQ 346

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSK----------EQELWYLDQTINDRGYCVDVALAHT 206
             EY   D   T  ++ +  P+               E   +       G  +       
Sbjct: 347 LMEYNAVDAVTTMYVWNKYYPVMVAEKQDQLYHGLFMESQEMIIHTELVGMPMCPKRLAE 406

Query: 207 LNQIVDVERT-------------------------------KLDQELESLTYGLVSSSRC 235
           +   +   R                                K  Q+       +  +   
Sbjct: 407 VETELTKLRDGYFNTIMQDPMVHRTTLLLREEAMVKKNATLKTIQKTIDDFSHIEFNPGS 466

Query: 236 LEKLKTWLFLETGLH----LEDLTETTCQRVLSSN--KKLTPQAIQVFNNRMRA---SRS 286
             +    L    GL            T    L+             +    +      + 
Sbjct: 467 GPQKALLLHKVIGLPVLDKTPTGQPATGGDELTKLIRHPAGASFKGLLQAMIDLDRVQKI 526

Query: 287 AVLKLNTLV-EAMNSDGRLRGTLQFL-GASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
               +       + +DG L     F  G + +GR S      QNLP  S   +       
Sbjct: 527 LSAFIPAFKAGRLKADGMLYLHGSFNLGGTISGRLSSSDPNMQNLPSGSAYGK------- 579

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                              ++S  +A++G     AD A +E R+ A +  +  K+K +  
Sbjct: 580 ------------------LIKSIFMAAKGYLFGGADFAALEDRINALLTRDPNKIKVYTD 621

Query: 405 GEDLYVTTYARSFNV-------------APAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           G D +       +               +   +    R   K     L Y G       M
Sbjct: 622 GYDGHSMRTFAFWPEKCIGIVDTVSSINSIQHIYPGLRGEAKAPHFLLQYGGSW-----M 676

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                +           ++  + +  + ++     +   +     L  G       
Sbjct: 677 GLVKNVGFAEDEAKRIEDNYHKLYSVSADWVATEIQKATKQGYVQLAFGLKLRTPL 732


>gi|32442297|gb|AAP82219.1| DNA polymerase [Podovirus GOM]
          Length = 397

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 115/414 (27%), Gaps = 120/414 (28%)

Query: 95  CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            TLV++  +        +L+A GE L  S     +   L                     
Sbjct: 1   DTLVMSSLSNPNREDGHSLRAWGERLGFSKGDHTDWTRLTP------------------- 41

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------QELWYLDQTINDRGYCVDVA 202
                   +YC  DV VT ++++ L                E+  +       G+ +D+ 
Sbjct: 42  -----DMEKYCVRDVEVTEKLYQHLLKELDGFDVSSIELEHEVQRITARQVRLGWLLDLK 96

Query: 203 LAHTLNQIVDVERTKLDQELESLT------------------------------------ 226
            AH L  ++  ++ +L+ +++                                       
Sbjct: 97  YAHQLLALLKEKKYELEDKVQDTFRPLPTFIREVTPRCKKDHTLSAVGLKFLGEQWSDVC 156

Query: 227 ------YGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQV 276
                      +    +++  +L    G      TE       + VLS    +     Q+
Sbjct: 157 GPFSRVDCPEFNLGSRQQIGRYL-QHFGWKPTKFTEKGHAIVDESVLSKITDIPE--AQL 213

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
               +   +  V ++ + +EA + DGR+ G +   GA  TGR +        +P      
Sbjct: 214 IAEYLMVQK-RVAQIQSWIEAADDDGRVHGRVNTNGA-VTGRMTHSEPNLAQVP------ 265

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                       RSC    EG  LV  D +G+E R+LA   G++
Sbjct: 266 ------------------AVRAPYGKECRSCWTVPEGYSLVGFDASGLELRMLAHYMGDR 307

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
                           +             + R   K    A  Y  G      
Sbjct: 308 EYTN---------EILHGDIHTANQHLAGLESRDQAKTFIYAFLYGAGDAKLGT 352


>gi|66392089|ref|YP_239314.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
 gi|62529199|gb|AAX84882.1| possible DNA polymerase subunit [Xanthomonas phage Xp15]
          Length = 640

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 79/558 (14%), Positives = 175/558 (31%), Gaps = 75/558 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC-------VILFAFGFDDHPVELWDCVHDPVM 53
           M    +D ET +     K  +    +          +   A       V+      D  +
Sbjct: 1   MKINSLDIETEAVDPAEK--LYAALQPWRLRQGRSRITSIAVCRPGFTVDQIVNRGDNTL 58

Query: 54  -PQVLKEALEN-TDVTIVAHNSYFERTVL------KACFNLD--IPIHRWICTLVLARSN 103
             + + + L++  +  + AHN+ F+   +      +    +   +   +W  T +L +  
Sbjct: 59  WLREMIDLLDSVGNDVVYAHNALFDIAFMIAQLQPRRMGAIPDVLKRVKWRDTGLLTKWL 118

Query: 104 GLPSALKAVGEALKLSSQKMEEGKE-LIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                 + +  +  L++      K+  +  F      + +   + P + E          
Sbjct: 119 INGQQPETMRFSYSLANLVATFLKDDEMTPFFVKMKSQGVSPGDNPEYCEKRGEL----- 173

Query: 163 GDVTVTREIFKRLEPLSSKEQE--------LWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
            D  +T ++  +L+   SKEQ                    G  +D       ++     
Sbjct: 174 -DAIMTLKLALKLQAHMSKEQRTGFLTEQDCLLPVANSWIMGIRIDREQVRRNDKFFSES 232

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC----QRVLSSNKKLT 270
           +T + ++L              ++L   LF E  L +   T +         L   +   
Sbjct: 233 KTAIAKKL----GLDEGIFTSTKRLPDLLFKEWLLPVISKTPSGNPSCNADTLKLLQYQL 288

Query: 271 PQAIQ--------VFNNRMRASRSAVLKLNTLVEAMNS--DGRLRGTLQFLGASRTGRWS 320
            +A          +     + S      + +++EA+    DG +  + +  G + TGR++
Sbjct: 289 NEAGNTEMADKLGLILEAKQYSTLHSKYVKSMIEALEHTGDGYIYASPRIFG-TYTGRFT 347

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                       +   +  D                +      VR  +IA EG ++  AD
Sbjct: 348 YS--------STTNGKDYEDDNAKTKKFKSAIAVHQIPRRDKMVRKSMIAPEGYEIYEAD 399

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ-------------VTKD 427
            +G E+R++A  + +   ++ F    + +  T A       +                 +
Sbjct: 400 ASGQESRLMALRSKDPVMIEIFSKDMNFHSMTGASIIGEDYSDFQVKYKAEGDEGGYYTE 459

Query: 428 QRAIGKVMELALGYQGGAKAFQKMA-STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           QR +GK+  L+  Y+ G KA  + A       L     L    +    ++    +   + 
Sbjct: 460 QRQLGKLTNLSCNYRIGGKALSQKAFLDYDTFLTVQTGLFLVQTFNRTYKGVPQYWEDVV 519

Query: 487 ENHPEHAIEDLFIGTACE 504
               +    + F G   +
Sbjct: 520 WESRKQGYTETFGGRRYK 537


>gi|297242718|ref|ZP_06926656.1| family A DNA-dependent DNA polymerase, putative [Gardnerella
          vaginalis AMD]
 gi|296888929|gb|EFH27663.1| family A DNA-dependent DNA polymerase, putative [Gardnerella
          vaginalis AMD]
          Length = 96

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%)

Query: 1  MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
          M  L +D ET S ++L KCG+ KYAE  D  ++LF +  D   V++ D      +P+V+ 
Sbjct: 1  MENLSVDLETFSSVNLGKCGVYKYAESDDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 60

Query: 59 EALENTDVTIVAHNSYFERTVLKACF---NLDIPIH 91
           AL +  VT  A N+ FER  L        +++   
Sbjct: 61 SALTDETVTKWAFNAQFERVCLSRYLRDKGINVNPG 96


>gi|77918409|ref|YP_356224.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380]
 gi|77544492|gb|ABA88054.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Pelobacter carbinolicus DSM 2380]
          Length = 593

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 82/669 (12%), Positives = 161/669 (24%), Gaps = 159/669 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E  S     +             LF+       V +W                
Sbjct: 10  KVILLDSE-FSQPPGERPTPHCLVAKE---LFS----GKTVRVW-IEKGEQPLAA--PFP 58

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            + +   VA+ +  E T         +P          A    L +    +     L   
Sbjct: 59  TDKNTLFVAYLASAEMTCF-QALGWKLP----------AYVIDLYAEFCLLTNGFFLPRG 107

Query: 122 K-----MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K     +    E I    + +    L  R  P   +      +YC+ DV     ++K + 
Sbjct: 108 KGLLGALAYFGEEILDAVEKKDMRELAQRGGPYTEDEKTDLLDYCQRDVLALERLWKHMV 167

Query: 177 PLSSKEQ-----ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           P    ++     E       I   G  +D      L +  +V +T L +EL +      +
Sbjct: 168 PHLDGDRSLLRGEYMKAVAKIEMTGIPIDTLALADLRENWEVIKTSLIEELGAPYGVYKN 227

Query: 232 SSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
                +    +L  + G+           T         K  P+   +   +    +   
Sbjct: 228 GKFKTDLFVQYLKNK-GIPWPLTPTRKPKTDADTFKEMAKCYPELKPLKELQQLLGKLK- 285

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                    + +DGR R       +   G  +G      N P  S+              
Sbjct: 286 ----LNKLQVGTDGRNR-----YLSGVFGSKTGR-----NQPSNSK-------------- 317

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                   +  +   +R  V    G  L   D    E  +   ++G++   +A+ +G+  
Sbjct: 318 -------CIFGLPSWMRKLVRPGPGNGLAYLDYEQQEFGIAGALSGDEAMRQAYISGDPY 370

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
                                                     +A              ++
Sbjct: 371 ------------------------------------------LAFAIQAGAAPRGATKES 388

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
           +        A              A+         + +    R+ ++R  +   ++    
Sbjct: 389 HGDIRSRFKATALGVQYGMGQDRLAMNLNISKGEAKALLDLHRKTYARFWQWQQDIENKA 448

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
                 G  +                                         +  T++   
Sbjct: 449 LIEGSIGGVLGW--------------------------------------KMRITSKTKD 470

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML- 647
           R       L    +QA   ++L   +    +    IV  VHD +V E P      A  + 
Sbjct: 471 RT------LANFPMQANGAEMLRLAVCLCAERNIKIVAMVHDALVIEAPIAGLEAAKSIA 524

Query: 648 YHLMTSNPS 656
              M     
Sbjct: 525 IQAMKEASE 533


>gi|119952216|ref|YP_950517.1| DNAP [Enterobacteria phage N4]
 gi|117650935|gb|ABK54408.1| DNAP [Enterobacteria phage N4]
          Length = 859

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 89/672 (13%), Positives = 175/672 (26%), Gaps = 116/672 (17%)

Query: 4   LFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LWDCVHDPVMPQVLK 58
           L +D ET S       +     C    +      AF  D  P+E   +  +   +  +L 
Sbjct: 183 LAVDIETFSLKHYDCGIGTITFCWNKHE----GIAFPVDYEPIEGATEAPYGRQVHNMLV 238

Query: 59  EALENTDVTIVA-----HNSYFERTVLKACF-------------NLDIPIHRWICTLVLA 100
            ++              HN  F+   L                  + I +  W CT ++ 
Sbjct: 239 RSMLRDFFIKYLNRQMYHNIAFDVYALIYQLFMTDLLDTEGLLHGMSIMLRNWDCTKLIT 298

Query: 101 RSN-----GLPSALKAVGEAL-------KLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                   G   +LK   +         +++        EL+                  
Sbjct: 299 YLATNSCAGNKLSLKDQAQEYAGNYAQEEINDITRIPLAELLEYNLVDGLCTWYVYEKHW 358

Query: 149 NHREAWRLFGEY------CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV-DV 201
           +     +    Y         D+ +  ++      + +       L Q  N+    + D 
Sbjct: 359 DTLVNDQQLDVYTNIFKPACEDI-IQMQLTGMPINMKTVLGVEEALTQDYNNALKTIADS 417

Query: 202 ALAHTLNQIVDVERTKLDQELESLT------YGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
            +     ++++ E  +   ++               +     +L+  LF    L +  LT
Sbjct: 418 KVIKDFTRLLNEEWVEKQNQILKKKRVTLADAKEQFNPNSGVQLQKLLFEFLELPVLGLT 477

Query: 256 ET----TCQRVLSSNKKLTP-----QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
            +    T   +L S K  T      + +    +     +     +  L  A         
Sbjct: 478 ASKLPATGSGILKSLKNHTQDTSILEILDALIDYKAVDKILTAFIPALKNARQGPDGWHY 537

Query: 307 TL--QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
                 LG + +GR S      QNLP  SR                          +  +
Sbjct: 538 LFGNLNLGGTVSGRLSSSEPNLQNLPSGSR-------------------------YAKII 572

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV----- 419
           + C  A  G      D A +E R+ A    +  KLK +  G D +       F       
Sbjct: 573 KKCFEAPPGWIFCGLDFASLEDRISALTTKDPNKLKVYTDGYDGHSLRAYAYFGEMMPDI 632

Query: 420 --------APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
                   +  +  K  R   K    AL YQG                      +     
Sbjct: 633 EDTVESVNSIQEKYKAYRQDSKAPTFALTYQGTYITL-----MKNCGFPEQKARMVEERY 687

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              ++ ++++ +   +   +     +  G          R +   + ++     +   + 
Sbjct: 688 HTLYKVSDDWVQAKLDQAAKDGYVTVAFGL---------RVRTPLLQQVIRGTSKTPYEA 738

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
              G+       +   L+  +     +  +  S   L  R   +         R      
Sbjct: 739 EAEGRTAGNALGQSWCLLNNRAGSEFMRKVRNSKHRLDIRPSTHIHDAQYFLIRDDMDVV 798

Query: 592 TYGGKLTENIVQ 603
            Y        VQ
Sbjct: 799 IYTNTHLVKAVQ 810


>gi|316995410|gb|ADU79191.1| DNA polymerase [Enterobacter phage EcP1]
          Length = 865

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/587 (12%), Positives = 143/587 (24%), Gaps = 138/587 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL------ 57
           L  D E  S              +  +   +F ++ H    +    +      L      
Sbjct: 190 LSADIEAWSLK----------FYEARLGTISFAWNQHEGIAFAVDFERNYEDALAIRLLL 239

Query: 58  KEALENTDVTIVAHNSYFERTVLKACF-------------NLDIPIHRWICTLVLARSNG 104
           K         ++ HN  ++ TV+                  LD+    W  T ++     
Sbjct: 240 KGFFTEYKGKMLWHNGSYDLTVIIYELWMNGLLDQKGLLTGLDVMTKNWHDTKIITYL-- 297

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
             +     G  L L +Q                      D  K       +    Y   D
Sbjct: 298 --ATNSCAGNHLGLKAQ------------SHEYAGNYALDDIKDISLIPKKDLVRYNLID 343

Query: 165 VTVTREIFKRLEPLSSKEQELWYLD----------QTINDRGYCVDVALAHTLNQIVDVE 214
              T  ++ +     + + +    D            +   G  +D+     + +I+  E
Sbjct: 344 SLCTWYVYGKHWQTMNDDNQRELYDDLFMPSLKNIIQMQLTGIPLDMEEVLKVEKILIKE 403

Query: 215 RTKLDQELESLTY------------------------------GLVSSSRCLEKLKTWLF 244
           +    QE+   +                                   +     +L+  L+
Sbjct: 404 KVTFYQEMLKFSVITDLVHSVRKRKCEKKNASLKTKQVTVEDFDDQFNPDSPLQLQELLY 463

Query: 245 LETGLH----LEDLTETTCQRVLSSNK-----KLTPQAIQVFNNRMRASRSAVLKLNTLV 295
              GL      +     T    +   K         + + +     + ++     +    
Sbjct: 464 DIMGLPVIDLTDTKAPATGAETMEKLKFKVKTPEHAELLDLLIKFSKVNKIITSFIPAFK 523

Query: 296 EAMNSDGRLRGTLQFL--GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
            A  ++        F   G + +GR S      Q +P                       
Sbjct: 524 AAPKAEDGWHYLFGFFNLGGTVSGRLSSSNPNLQQIP----------------------- 560

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                  S  ++ C  A +G   V  D A +E R+ A    +  KLK +  G D +    
Sbjct: 561 -SSKSPYSKVIKKCFRAPKGFLFVGLDFASLEDRISAVTTKDSNKLKVYTDGYDGHCLRA 619

Query: 414 ARSFNVAP-------------AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
              F                     KD R   K     L Y+G       M        +
Sbjct: 620 YAYFKDEMPDIINTVESINSIEGKYKDIRQKSKTPTFLLTYRGTY-----MGLMQKCGFD 674

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   +   E +++++++     E   +        G       
Sbjct: 675 EPTAKQIESRYHELYKESDDWVNARLEEATKVGYVTAAFGLRVRTPL 721


>gi|119493749|ref|ZP_01624319.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106]
 gi|119452494|gb|EAW33680.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106]
          Length = 874

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 80/647 (12%), Positives = 162/647 (25%), Gaps = 167/647 (25%)

Query: 56  VLKEALENTDVTIV------AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
            L + L+      V        N       L     L +   +     +        + L
Sbjct: 34  QLSKILQEPTTVKVFADAVVGQN-------LLNQNGLKV-GGQIFDVKLADSLL--TAGL 83

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           +        +S      + L     +    + L  R+    + A     E  K +   T 
Sbjct: 84  EVD------NSIASISSRHLGKFSLESLPQDLLKLRDVLRVKLASEELIEVAKIEFNAT- 136

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                                 ++  G  +D A      Q ++ ER  L+ +++      
Sbjct: 137 -----------------KATAQMSQNGVRLDTAWLKDKQQELEEERRGLESQVKDWLGEK 179

Query: 230 V---------SSSRCLEKLKTW----LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
           +         S     +K         F   G+ LE    +  +  + S     P   Q 
Sbjct: 180 LPDETDKIQLSDLTSTKKADKTQTLECFNRAGVPLE----SFNKNHIQSLTTEHPILNQF 235

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              R          +  L+  ++ + ++  T     A+ TGR S      QN+P      
Sbjct: 236 QRMRTVNDLIGNKGIQGLLNVVDDENKVYPTWHQNSAA-TGRMSATKPAIQNIP------ 288

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS----EGKKLVVADLAGIEARVLAWM 392
                                      ++  +I      E +  V AD +  E R+LA +
Sbjct: 289 -------------------------ASLKRAIIPEQQGEEKQVFVRADYSQQELRILAQL 323

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
            G++    A++ G D +  T +        Q+T ++R   K +     Y    +  Q  A
Sbjct: 324 TGDKTLTSAYQEGRDAHRLTASLMTGKPENQITSEERQRAKPVNFGKIYGQSPQGLQSYA 383

Query: 453 S-TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
             + G+  +    +    +  + +       + +++                        
Sbjct: 384 KVSYGVEFSIEDAMKFQAAMDKGYPSVARHEQQVRQ------------------------ 419

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
                  +  ++ + A                R       +                 Y 
Sbjct: 420 -------DFKHQWNAALSSEDNQYPQTRTLLGRKREWQPQQHQ---------------YP 457

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA----EGMMNATKAGYDIVLT 627
            +                            +Q    D+             + G  I L 
Sbjct: 458 PINE---------------------ALNAPIQGSGADMSKLALALLPDALQETGAKITLI 496

Query: 628 VHDEIVCETPDTDEFNASMLYH-LMTSN-PSWAKGLPLKAEGYESKR 672
            HD+IV    ++       +   +M          +P  AE      
Sbjct: 497 RHDKIVLTAQESQAEKVGKILESVMKVAGLRITPDIPTVAEVSICDN 543


>gi|167462369|ref|ZP_02327458.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 375

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 106/361 (29%), Gaps = 53/361 (14%)

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW- 391
                +L       P        P +     VR+C I  +G   V ADL  IE R++A  
Sbjct: 8   HEIVRKLITSNEKAPKGTNLQNLPAKGAGVRVRNCFIPRKGFTFVGADLGQIEPRIMAHI 67

Query: 392 ---MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV---------TKDQRAIGKVMELAL 439
                G+    + F  G DLY T   ++F +              T + R + K  +LA+
Sbjct: 68  MHTKYGDNSMRQIFMDGVDLYTTGAMQTFGLEEKYCLDEAYDPTGTFEPRKLMKTGQLAV 127

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y    K+F        +N+      +   +    +       + ++E        +   
Sbjct: 128 SYDQSPKSF-----AKKMNVTEEVAHMFFENFDRTYPSFRTMVKDIREEMKSCGYVETLF 182

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
           G                     +    A +      K I     R            ++ 
Sbjct: 183 GRK---------------RRFPDFNEVASQTARNEQKLIRLYTERKRLRNKKNPTAADMR 227

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN--- 616
                 R    +D  +  S          R           ++Q    DIL    +    
Sbjct: 228 ------RLTAVQDEIDILSEKRGLVGYWLRAAFNA------VIQGTGADILKLIGIRNAE 275

Query: 617 -ATKAGYDIVLTVHDEIVCETPDTD--EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
              + G+++  ++HDEI    P+    E    ++  +MT        +PL  +     R+
Sbjct: 276 ICRERGWEMNASIHDEIKNSIPNEQLTEGTIDLINEIMTQTVE--LSVPLITDTVIEPRW 333

Query: 674 R 674
            
Sbjct: 334 M 334


>gi|325272840|ref|ZP_08139177.1| DNA polymerase [Pseudomonas sp. TJI-51]
 gi|324102045|gb|EGB99554.1| DNA polymerase [Pseudomonas sp. TJI-51]
          Length = 683

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 79/717 (11%), Positives = 160/717 (22%), Gaps = 211/717 (29%)

Query: 70  AHN-SYFERTVLKA-CFNLDIPIHRWICTLVLARS---------------------NGLP 106
            HN   ++  V++       +     I TLV  R                          
Sbjct: 61  GHNVIKYDIPVIQKLYPGFIVNPALVIDTLVCTRLIWSNIKDTDTGLLKKAVLPGKLFGS 120

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            +L+A G  L+L       G+       +               +E      +YC  DV 
Sbjct: 121 HSLEAWGYRLRLMK-----GEYATEFKARMGDAYVDGMEWLEFSQE----MLDYCVQDVV 171

Query: 167 VTREIF------KRLEPLSSKEQELWYLDQTINDRGYCVDVAL-------AHTLNQIVDV 213
           VT  ++             + E  + +L       G+  +                 ++ 
Sbjct: 172 VTSALWKRILGKNYSPRALALEHRVAWLMAAQERNGFHFNREKAAILYAKLAQRRGDLER 231

Query: 214 ERTKLDQELESLTY---------------------------------------------- 227
           E  +  +   +                                                 
Sbjct: 232 ELKEFFKFWHAPAGEVLTKKTRRVFIEDPRGNTERRVKLKGQPAFTQVGWFEKYTEGTRY 291

Query: 228 ----GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS-NKKLTPQAIQVFNNRMR 282
                +  +    + +   L    G   E  T+    +V      KL     ++    + 
Sbjct: 292 TKVKIVEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLNYPPCKLLTEYLL 351

Query: 283 ASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            ++              +   GR+ G++   GA+ TGR +        +P          
Sbjct: 352 VAKRISQLAEGKQAWMLVEKQGRIHGSVNPNGAA-TGRATHAYPNVAQVP---------- 400

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA------- 393
                                   R       G  LV AD +G+E R LA          
Sbjct: 401 --------------ASGSPYGIDCRELFTVPHGWLLVGADASGLELRCLAHFMARYDGGK 446

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
                L       ++               + K  R   K    A  Y  G +       
Sbjct: 447 YVDILLNGDIHWANVQAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVGT--I 504

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
             G+     A  +      + + + ++                       +++K  + +K
Sbjct: 505 VYGMVAKAKALGLDYQHLLDVFFNGQDNPDEEALKAAG------------KKLKATFLRK 552

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
              + +L   + +A ++    G                             GR +  +  
Sbjct: 553 TPALKKLVKAVKEAAKRGHLVG---------------------------LDGRHVHVKSA 585

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------------G 621
                                      ++Q        + ++                  
Sbjct: 586 HA---------------------ALNYLLQGAGALACKQWLVFLDDELQARGLKHGWDGD 624

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
           Y     VHDE+     +     A+++     +  + A        PL  E      +
Sbjct: 625 YAFCAWVHDEVQIACRNEAI--AAIVREAAEACVAKAGEAFNFRCPLAGESKMGLNW 679


>gi|283969415|gb|ADB54441.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969418|gb|ADB54442.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969420|gb|ADB54443.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969440|gb|ADB54453.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
 gi|283969448|gb|ADB54457.1| DNA polymerase I [Leptospira kirschneri]
          Length = 144

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 7/146 (4%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +DV     L +  D E   L+ E+     G   +    ++L+  LF    L +   T
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHKQAGGP-FNIASTKELQKILFDNLKLRIVKKT 60

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311
           +   +T   VL       P   ++ + R + ++     ++ L + +N   GR+  +    
Sbjct: 61  QTGFSTDHEVLEELAGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQT 119

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHE 337
            A+ TGR S      QN+P   R   
Sbjct: 120 IAA-TGRLSSTDPNLQNIPIRDREGR 144


>gi|283969363|gb|ADB54415.1| DNA polymerase I [Leptospira interrogans]
 gi|283969375|gb|ADB54421.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969377|gb|ADB54422.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969379|gb|ADB54423.1| DNA polymerase I [Leptospira interrogans serovar Canicola]
 gi|283969381|gb|ADB54424.1| DNA polymerase I [Leptospira interrogans]
 gi|283969383|gb|ADB54425.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni]
 gi|283969385|gb|ADB54426.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969387|gb|ADB54427.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969389|gb|ADB54428.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969391|gb|ADB54429.1| DNA polymerase I [Leptospira interrogans serovar IH CF1]
 gi|283969393|gb|ADB54430.1| DNA polymerase I [Leptospira interrogans]
 gi|283969395|gb|ADB54431.1| DNA polymerase I [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969399|gb|ADB54433.1| DNA polymerase I [Leptospira interrogans]
 gi|283969401|gb|ADB54434.1| DNA polymerase I [Leptospira interrogans]
 gi|283969403|gb|ADB54435.1| DNA polymerase I [Leptospira interrogans]
 gi|283969405|gb|ADB54436.1| DNA polymerase I [Leptospira interrogans serovar Pomona]
 gi|283969407|gb|ADB54437.1| DNA polymerase I [Leptospira interrogans serovar Pomona]
 gi|283969422|gb|ADB54444.1| DNA polymerase I [Leptospira interrogans]
 gi|283969424|gb|ADB54445.1| DNA polymerase I [Leptospira interrogans]
 gi|283969426|gb|ADB54446.1| DNA polymerase I [Leptospira interrogans]
 gi|283969428|gb|ADB54447.1| DNA polymerase I [Leptospira interrogans]
 gi|283969430|gb|ADB54448.1| DNA polymerase I [Leptospira interrogans]
 gi|283969432|gb|ADB54449.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni]
 gi|283969436|gb|ADB54451.1| DNA polymerase I [Leptospira interrogans]
 gi|283969438|gb|ADB54452.1| DNA polymerase I [Leptospira interrogans]
 gi|283969444|gb|ADB54455.1| DNA polymerase I [Leptospira interrogans]
 gi|283969446|gb|ADB54456.1| DNA polymerase I [Leptospira interrogans]
 gi|283969450|gb|ADB54458.1| DNA polymerase I [Leptospira interrogans]
 gi|283969452|gb|ADB54459.1| DNA polymerase I [Leptospira interrogans]
 gi|283969454|gb|ADB54460.1| DNA polymerase I [Leptospira interrogans]
          Length = 144

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 7/146 (4%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +DV     L +  D E   L+ E+     G   +    ++L+  LF +  L +   T
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHRQAGGP-FNIASTKELQKILFDDLKLRIVKKT 60

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311
           +   +T   VL       P   ++ + R + ++     ++ L + +N   GR+  +    
Sbjct: 61  QTGFSTDHEVLEELAGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQT 119

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHE 337
            A+ TGR S      QN+P   R   
Sbjct: 120 IAA-TGRLSSTDPNLQNIPIRDREGR 144


>gi|289807535|ref|ZP_06538164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 145

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 5/147 (3%)

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F + 
Sbjct: 4   GRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLP 63

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              VT +QR   K +   L Y   A        +  LN+         +   E +     
Sbjct: 64  LDSVTGEQRRSAKAINFGLIYGMSA-----FGLSRQLNIPRKEAQKYMDLYFERYPGVLE 118

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVK 507
           +    +    E    +   G       
Sbjct: 119 YMERTRAQAKEQGYVETLEGRRLYLPI 145


>gi|315181204|gb|ADT88118.1| DNA polymerase I [Vibrio furnissii NCTC 11218]
          Length = 676

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 90/690 (13%), Positives = 180/690 (26%), Gaps = 187/690 (27%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL- 99
              + +     + P+   ++L +  VT V H++  +   +     L+     W  T +  
Sbjct: 106 HSFVINVASPSIRPK--LQSLFDLPVTYVTHDAKPDLHCI-WSLGLN-EPRYWWDTCIAE 161

Query: 100 -ARSNGLP----------------------------SALKAVGEALKLSSQKMEEGKELI 130
            AR  G                                L    +   + S      K L+
Sbjct: 162 KARYLGQHNNAKPTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSDLASSAKLLM 221

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFKRLEPLSSKEQELWYLD 189
               + +       + +   + +  +   Y       +   I + L    S E      +
Sbjct: 222 --GSEQDCPSFSEFQIERTSQLSITVAKLYLTQSQSCLMFGIHQHL---ISIEMPWVVTN 276

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             I   G+ V       + +  + +     QEL  L      +    +  K  LF   GL
Sbjct: 277 AAIEWNGFKVCRDKCSQILEACERKLNLYSQELAQLGMT---NPNS-QHQKQALFASLGL 332

Query: 250 HLEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE--AMNSDGRL 304
                     +  + +LS N  L P    +       +    +  + +++   + SDGR+
Sbjct: 333 LHHFKDGEDYSFQREMLSKNYALHPAVAFLAKY----THIDSVYKDVILQPGIVGSDGRV 388

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
               + L A+ TGR +        LP                                 +
Sbjct: 389 HSEQKQLTAA-TGRQATVAPNILGLP-------------------------------AVL 416

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET----------GEDLYVTTYA 414
           R  V+A +G  +   DLA IE  + A + G+   +K +                 + +  
Sbjct: 417 RPLVVAQDGYAIGEVDLAQIEVAIAAGVYGDSNLVKMYNQGDLYTAMAQEFFCDELESEY 476

Query: 415 RSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           R  + +   +   ++RAI K   L L Y   +                            
Sbjct: 477 RICDSSTFKEKYPEKRAIMKQCTLGLIYGITSFGI------------------------- 511

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                              A +          +   +      + +   ++ Q     + 
Sbjct: 512 -------------------AKKLNISVNKATELMDKFLSMFPELQKAIEKMPQY--GALR 550

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
              +      R                     R L  +     ++++             
Sbjct: 551 GHVSTATGLHRY--------------------RQLDAKRGHTEKNWM------------- 577

Query: 594 GGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASML-Y 648
                   VQ  +  +         +        +++ +HD  V E P       S L  
Sbjct: 578 ----VNMPVQGTAAALFKAAGNRLHQLYKSYDAKLIVAMHDAFVFEVPKEHLSEVSELTA 633

Query: 649 HLMTSNP-SWAKGLPLKAEGYES--KRYRK 675
            LMT         L ++A+   S    + K
Sbjct: 634 QLMTQVVQEMYPQLKIRADINISQPDCWTK 663


>gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2]
 gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2]
          Length = 625

 Score =  116 bits (291), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 84/693 (12%), Positives = 174/693 (25%), Gaps = 192/693 (27%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVHDPVMPQVLKE 59
           +  D ET   +               +      +      +     D    P   + ++E
Sbjct: 37  VATDIETPGLL-----------RQFDINCVTAAWRHGDGRVHSVLLDPDRTPHHDEAVRE 85

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPI--HRWICTLVLARSNG----LPSALKAVG 113
             ++ +V  +  N  F+   L     +       +++ TL+ AR       +  +L  + 
Sbjct: 86  IYDSAEVI-ILQNGVFDLPALLHSGLITPEQIREKFLDTLLPARMIDTSSPMARSLTMLV 144

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           +   L  +++  G EL  +    +  +  Y+           ++      D  +T  ++ 
Sbjct: 145 KRH-LGVEELTGGIELAFKAAGYKRQQDGYEG----MDIDSPIYRLGAMADTVMTLALWP 199

Query: 174 RLEP---------------LSSKEQELWYLDQTIND---------RGYCVDVALAHTL-- 207
            L                    + +  + +++ I +         +G  VD         
Sbjct: 200 VLYEAAIDQQLDHPFQSRGCVDRAEAQYVVERMITELRIVGTRVAKGVNVDRGALERYAD 259

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTETTCQRVLSSN 266
           +   D  R         L  G    S+ +E L +   L               + ++   
Sbjct: 260 SVEDDRRRATATLAAVGLEGGKGKESKIIEYLASVGHLPADWPRTPSGKLKATKDLMEGL 319

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
                 A +   +  +        L  +       GR    +   GA+ TGR S    P 
Sbjct: 320 GDPIATAQRTLAHMDQL----TGYLEKVEAQSQVTGRCHPQISVAGAAATGRMSISSPPL 375

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
           Q                                 S   R+ + A EG+++   D + IE 
Sbjct: 376 QQF-------------------------------SGPARAILTADEGQRMWSVDWSQIEP 404

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
                                                       +    E    +  GA 
Sbjct: 405 VT---------------------------------------MALLAGDSEFLAPFAAGAD 425

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
            ++ +    G+                +                + A        +  ++
Sbjct: 426 LYEPIMRAAGIE--------------RKVAKVLLLQTMYGSGAAKIAETIGHTPESAVQL 471

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
           ++         S+  + +         +GK + A KR                       
Sbjct: 472 RRQMFAAMPESSKFMSRVQTL---GDTHGKIVTAGKRVLDVDSGF--------------- 513

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY--DI 624
                                      G K T  I Q  + DIL E ++   + G    +
Sbjct: 514 ---------------------------GYKATNYICQGTALDILTETIIELDRRGLGDSM 546

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
           +  +HDEI+   P      A  +  +M   P +
Sbjct: 547 LWWMHDEILVSGPP---EVAREVQEVMEIVPDF 576


>gi|213419973|ref|ZP_03353039.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 138

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 5/142 (3%)

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R   IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F + 
Sbjct: 2   GRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLP 61

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              VT +QR   K +   L Y   A        +  LN+         +   E +     
Sbjct: 62  LDSVTGEQRRSAKAINFGLIYGMSA-----FGLSRQLNIPRKEAQKYMDLYFERYPGVLE 116

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
           +    +    E    +   G  
Sbjct: 117 YMERTRAQAKEQGYVETLEGRR 138


>gi|227540973|ref|ZP_03971022.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227183233|gb|EEI64205.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 100

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 53/87 (60%)

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
           R  +YGGKL ENIVQAV+RD+    M    + G+ IV+ VHDEIV + P    F  +   
Sbjct: 13  RLESYGGKLVENIVQAVARDLFVHAMTLVAQTGHKIVMHVHDEIVIDEPVGSGFTVADAC 72

Query: 649 HLMTSNPSWAKGLPLKAEGYESKRYRK 675
            LM + P WA GLPL A+GYE   YRK
Sbjct: 73  VLMATLPDWAAGLPLDADGYECDYYRK 99


>gi|283969353|gb|ADB54410.1| DNA polymerase I [Leptospira interrogans serovar Bratislava]
 gi|283969355|gb|ADB54411.1| DNA polymerase I [Leptospira interrogans]
 gi|283969357|gb|ADB54412.1| DNA polymerase I [Leptospira interrogans serovar Australis]
 gi|283969359|gb|ADB54413.1| DNA polymerase I [Leptospira interrogans serovar Muenchen]
 gi|283969361|gb|ADB54414.1| DNA polymerase I [Leptospira interrogans serovar Muenchen]
 gi|283969365|gb|ADB54416.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969367|gb|ADB54417.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969369|gb|ADB54418.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969371|gb|ADB54419.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis]
 gi|283969373|gb|ADB54420.1| DNA polymerase I [Leptospira interrogans serovar Bataviae]
 gi|283969397|gb|ADB54432.1| DNA polymerase I [Leptospira interrogans serovar Lai]
 gi|283969409|gb|ADB54438.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes]
 gi|283969413|gb|ADB54440.1| DNA polymerase I [Leptospira interrogans serovar Wolffi]
 gi|283969434|gb|ADB54450.1| DNA polymerase I [Leptospira interrogans serovar Lai]
 gi|283969456|gb|ADB54461.1| DNA polymerase I [Leptospira interrogans serovar Bratislava]
          Length = 144

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 7/146 (4%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +DV     L +  D E   L+ E+     G   +    ++L+  LF    L +   T
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHRQAGGP-FNIASTKELQKILFDNLKLRIVKKT 60

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311
           +   +T   VL       P   ++ + R + ++     ++ L + +N   GR+  +    
Sbjct: 61  QTGFSTDHEVLEELVGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQT 119

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHE 337
            A+ TGR S      QN+P   R   
Sbjct: 120 IAA-TGRLSSTDPNLQNIPIRDREGR 144


>gi|283969442|gb|ADB54454.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa]
          Length = 144

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 7/146 (4%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +DV     L +  D E   L+ E+     G   +    ++L+  LF    L +   T
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHRQAGGP-FNIASTKELQKILFDNLKLRIVKKT 60

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311
           +   +T   VL       P   ++ + R + ++     ++ L + +N   GR+  +    
Sbjct: 61  QTGFSTDHEVLEELIGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQT 119

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHE 337
            A+ TGR S      QN+P   R   
Sbjct: 120 IAA-TGRLSSTDPNLQNIPIRDREGR 144


>gi|26988997|ref|NP_744422.1| DNA polymerase [Pseudomonas putida KT2440]
 gi|24983817|gb|AAN67886.1|AE016420_8 DNA polymerase [Pseudomonas putida KT2440]
          Length = 695

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/720 (10%), Positives = 156/720 (21%), Gaps = 217/720 (30%)

Query: 70  AHN-SYFERTVLKA-CFNLDIPIHRWICTLVLARS---------------------NGLP 106
            HN   ++  V++       +     I TLV  R                          
Sbjct: 73  GHNVIKYDIPVIQKLYPGFIVNPALVIDTLVCTRLIWSNIKDTDTGLLKKAVLPGKLFGS 132

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            +L+A G  L+L       G+       +               +E      +YC  DV 
Sbjct: 133 HSLEAWGYRLRLMK-----GEYATEFKARMGDAYVDGMEWLEFSQE----MLDYCVQDVV 183

Query: 167 VTREIF------KRLEPLSSKEQELWYLDQTINDRGYCVDVAL-------AHTLNQIVDV 213
           VT  ++             + E  + +L       G+  +                 ++ 
Sbjct: 184 VTSALWKRILGKNYSARALALEHRVAWLMAAQERNGFHFNREKAALLYAKLAQRRGDLER 243

Query: 214 ERTKLDQELESLTY---------------------------------------------- 227
           E  +  +   +                                                 
Sbjct: 244 ELKEFFKFWHAPAGEVLTKKTRRVFIEDPRGNTERRVKLKGQPAFNQVGWFEKYTEGVRY 303

Query: 228 ----GLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNN 279
                +  +    + +   L    G   E  T+         V+S          ++   
Sbjct: 304 TKVKIVEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLSYP---PCKLLTE 360

Query: 280 RMRASRSAVLKLNTLV--EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
            +  ++              +   GR+ G++   GA+ TGR +        +P       
Sbjct: 361 YLLVAKRISQLAEGKQAWMLVEKQGRIHGSVNPNGAA-TGRATHAYPNVAQVP------- 412

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA---- 393
                                      R       G  LV AD +G+E R LA       
Sbjct: 413 -----------------ASGSPYGKDCRELFTVPLGWLLVGADASGLELRCLAHFMARYD 455

Query: 394 ---GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
                   L       ++               + K  R   K    A  Y  G +    
Sbjct: 456 GGKYVDILLNGDIHWANVQAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVGT 515

Query: 451 MASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAW 510
                G+     A  +      + + + ++                       +++K  +
Sbjct: 516 --IVFGMVAKAKALGLDYQHLLDVFFNGQDNPDEEALKAAG------------KKLKATF 561

Query: 511 RQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY 570
            +K   + +L   + +A ++    G                             GR +  
Sbjct: 562 LRKTPALKKLVKAVKEAAKRGHLVG---------------------------LDGRHVHV 594

Query: 571 RDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---------- 620
           +                             ++Q        + ++               
Sbjct: 595 KSAHA---------------------ALNYLLQGAGALACKQWLVFLDDELQARGLKHGW 633

Query: 621 --GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
              Y     VHDE+     +        +     +  + A        PL  E      +
Sbjct: 634 DGDYAFCAWVHDEVQIACRNEAIAVI--VREAAEACVAKAGEAFNFRCPLAGESKMGLNW 691


>gi|213025755|ref|ZP_03340202.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 107

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 35/133 (26%), Gaps = 26/133 (19%)

Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
                  +T + VL       P    +   R   ++      + L   +N       T  
Sbjct: 1   KTPGGAPSTSEEVLEELALDYPLPKVILEYR-GLAKLKSTYTDKLPLMINPKTGRVHTSY 59

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
               + TGR S      QN+P  +                              +R   I
Sbjct: 60  HQAVTATGRLSSTDPNLQNIPVRNEEGRR-------------------------IRQAFI 94

Query: 370 ASEGKKLVVADLA 382
           A E   +V AD +
Sbjct: 95  APEDYLIVSADYS 107


>gi|159483045|ref|XP_001699573.1| hypothetical protein CHLREDRAFT_178318 [Chlamydomonas reinhardtii]
 gi|158272678|gb|EDO98475.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 1008

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 100/367 (27%), Gaps = 73/367 (19%)

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            + +     R  +         ++ ++   GR+  TL  +G + TGR S        LP 
Sbjct: 324 VVHLVMEHARLDKLIQSYTGLFLQHVDRRTGRVYPTLNQVG-TATGRLSMSGANLMALPH 382

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                 E  +                       R  ++A  G  L+ AD + +E RV+A 
Sbjct: 383 DKEEFGEHLRNF---------------------RRALVARPGWLLLAADYSQVELRVIAH 421

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
           +  +     AF    D++  T AR F V    VT  QR  GK +   L Y  GA      
Sbjct: 422 ITQDPTLASAFRERRDVHAQTAARVFRVPLGAVTPAQRQAGKQVNFGLVYGMGAAKL--- 478

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                + L         ++  + +    +     +             G           
Sbjct: 479 --ARDIGLPDNEASDFIHTFRDVFATLYDQMDRTKAQAFVSGYATSLRGRRRGFR----- 531

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
              S     W +    FE       A     +             +              
Sbjct: 532 GAWSGKGLAWLDWQARFEPWRRQQLAAEVLGKLKADEGLAGWRGMD-------------- 577

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----------G 621
              ++R+ L               +L     Q  + DI+   M+  T A           
Sbjct: 578 --RDDRTTLR--------------ELGNMSYQGSTSDIVKAAMVRCTAALGPGPGGINSR 621

Query: 622 YDIVLTV 628
             ++L V
Sbjct: 622 AQLLLQV 628


>gi|32442285|gb|AAP82213.1| DNA polymerase [Podovirus GOM]
          Length = 409

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 63/476 (13%), Positives = 124/476 (26%), Gaps = 136/476 (28%)

Query: 95  CTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            TLVL+R           L+  G  L+    + E+ +                       
Sbjct: 1   DTLVLSRLFNPTREGGHGLEGWGYRLRHKKIEFEDFE--------------------SFS 40

Query: 151 REAWRLFGEYCKGDVTVTREIFKR---------LEPLSSKEQELWYLDQTINDRGYCVDV 201
            E       YC+ DV++  ++++           +   + E  ++ + Q   DRG+ +D 
Sbjct: 41  PE----MMAYCRQDVSLNHKVYQHLARVEAAGFSKDAVTLEHSVYRIMQAQRDRGFLLDE 96

Query: 202 ALAHTLNQIVDVERTKLDQELESLT----------------------------------- 226
             A +L   ++   ++ ++ +                                       
Sbjct: 97  KHAMSLQAELNENLSQAEKLVHKTFRPRETQMTLVPLMTKAGKVSKMAQIKGETKKVRLS 156

Query: 227 ------------------YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSS 265
                                  +    +++  +L                   ++VLS 
Sbjct: 157 DEEYAKASANPNEHLVRCDSEPFNLGSRKQIGEYLMEFGWKPAKFTPTGQPIVDEKVLSK 216

Query: 266 NKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            K +   A  V    +   +  + ++ +  + +  DGR+RG +   GA  TGR +     
Sbjct: 217 IKDIPEAA--VIAEYLMLQK-RIAQITSWFKEVGDDGRVRGFVNTNGA-VTGRMTHSHPN 272

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
              +P                                  R C    +G KLV  D +G+E
Sbjct: 273 MAQVPSTGSP------------------------YGKECRQCWTVMDGYKLVGIDASGLE 308

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA    ++            Y                 + R   K    AL Y  G 
Sbjct: 309 LRMLAHYMNDEGF---------TYELLNGDIHTANQMAAGLESRNQAKTFIYALLYGAGD 359

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
                  +  G N +    L ++              +       +        G 
Sbjct: 360 AKL---GAVVGGNADDGGRLRQSFFDNLPAFKV---LKDRVARAAKRGYLKGLDGR 409


>gi|435164|emb|CAA53760.1| DNA polymerase I [Rhizobium leguminosarum]
          Length = 158

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 46/163 (28%), Gaps = 27/163 (16%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSA 108
                LK  LE+  V  VA N  ++  +LK      I    +  T++++           
Sbjct: 10  DALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLEPAPARHG 66

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  + E           G   I      +        N             Y   D  VT
Sbjct: 67  MDPLSEKF--------LGHTPIPY----KDVAGSGKANVTFDLVDIDRATHYAAEDADVT 114

Query: 169 REIFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVA 202
             ++  L+P             E+ L  +   +  RG  VD  
Sbjct: 115 LRLWLVLKPGCARGLTSVYERLERPLLPVLARMEARGITVDRQ 157


>gi|313905698|ref|ZP_07839059.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
 gi|313469522|gb|EFR64863.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
          Length = 103

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 1  MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
          M  + ID +T S +++TKCG  KYAE  +  ++LF    D  PV ++D      +P+ + 
Sbjct: 2  MKEMSIDLKTYSDVNITKCGAYKYAESDEFEILLFGVSVDGGPVTVYDLACGDTIPEEIL 61

Query: 59 EALENTDVTIVAHNSYFERTVLKACF 84
           AL + +VT  A N+ FER  L    
Sbjct: 62 AALSDENVTKWAFNASFERVCLSNWL 87


>gi|227544665|ref|ZP_03974714.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185353|gb|EEI65424.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
            T ++  R  TYG KL ENIVQA SRD+LA  M     AG  +V+ +HDE V + P    
Sbjct: 1   NTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPTD-- 58

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +   +  +MT  P WA GL L A G+    Y+K
Sbjct: 59  RSLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 92


>gi|167464943|ref|ZP_02330032.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384416|ref|ZP_08058102.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150774|gb|EFX44234.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 388

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 95/359 (26%), Gaps = 44/359 (12%)

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
            +L      +P        P +     VR+C I  +G   + ADL  I+ R++A +   +
Sbjct: 12  RKLITSNEKVPKGTNLQNLPAKGAGVRVRNCFIPRKGFTFIGADLGQIQPRIMAHIMYVK 71

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
                                 V       D      +M   L  +            +G
Sbjct: 72  ---------YGDNSMRQIFVDGV-------DLYTKMAMMTFGLP-EQVCLDKAWYDPVSG 114

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                          P +            ++    A +            + + +    
Sbjct: 115 QGGFGGEPPATAY-YPRKMMKTGQLAVSYDQSPRAFAKKMNVTEDVAHMFFENFDETFPS 173

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVY----MKKDKNNLILMLPSGRSLVYRD 572
              +  +  +  ++  +     +  ++R  P         K     +  L S R    ++
Sbjct: 174 FKPMVKDYREMMKR--DGYVETLFGRKRRFPDFNEVAAFVKRNEQRLYRLYSERKR-LQN 230

Query: 573 VGNNRSYLNTT-----------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----A 617
           + N R                 + +      +       ++Q    DIL    +      
Sbjct: 231 ITNPRDADRKRLTAVQDEIDILSAKRGLVGYWIRAAFNAVIQGTGADILKLIGIRNAAVC 290

Query: 618 TKAGYDIVLTVHDEIVCETPDTD--EFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            + G+++  ++HDEI    P+         ++  +M         +PL  +      + 
Sbjct: 291 RERGWEMNASIHDEIKNSIPNDQFTAETIDLINEIMMKTVE--LSVPLVTDTVIEPCWM 347


>gi|283969411|gb|ADB54439.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes]
          Length = 144

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 7/146 (4%)

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           G  +DV     L +  D E   L+ E+     G   +    ++L+  LF    L +    
Sbjct: 2   GIALDVPYFEELARDFDREIRHLESEIHRQAGGP-FNIASTKELQKILFDNLKLRIVKKN 60

Query: 256 E---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFL 311
           +   +T   VL       P   ++ + R + ++     ++ L + +N   GR+  +    
Sbjct: 61  QTGFSTDHEVLEELVGEHPIIEKLLDYR-KYTKLKSTYVDALPKMVNPKTGRIHTSYNQT 119

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHE 337
            A+ TGR S      QN+P   R   
Sbjct: 120 IAA-TGRLSSTDPNLQNIPIRDREGR 144


>gi|281413897|ref|ZP_06245639.1| DNA polymerase I [Micrococcus luteus NCTC 2665]
          Length = 134

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 18/140 (12%)

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
              RD     + + + +       GR     D+ ++            R           
Sbjct: 1   GGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDN---RQLRDMAERAALNAP----- 52

Query: 601 IVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTS 653
            +Q  + DI+   M++             ++L VHDE++ E P  +   A ++L   M  
Sbjct: 53  -IQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQATALLEERMGR 111

Query: 654 NPSWAKGLPLKAEGYESKRY 673
                  +PL       + +
Sbjct: 112 AAE--LSVPLDVHVGRGRSW 129


>gi|66391259|ref|YP_238608.1| ORF004 [Staphylococcus phage Twort]
 gi|62637189|gb|AAX92300.1| ORF004 [Staphylococcus phage Twort]
          Length = 1067

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 73/638 (11%), Positives = 147/638 (23%), Gaps = 193/638 (30%)

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L +  +   L          +       +    +   +         L   Y  GD   
Sbjct: 444 NLSSASKEYVLD----TAINLINKYKNVKDVINDVDGNSFNYDWIPLELMHPYASGDTDA 499

Query: 168 TREIFKRLEPLSSKEQELWYL-------------DQTINDRGYCVDVALAHTLNQIVDVE 214
            R I+  +     ++     L                I   G   D    + ++     E
Sbjct: 500 CRRIYCDVINKLKEQNRPKALELLTKSYPRLTRTLARIQSNGMYTDTEYLYMIDDKYSNE 559

Query: 215 RTKLDQELESLTYGLVSS-----------------------------------------S 233
             K++Q+L S                                                  
Sbjct: 560 LDKIEQKLRSHWVIKEFEDTRYDLYMAGVEEFESNPPKERNKSITQYRDKFKNGGWKFKP 619

Query: 234 RCLEKLKTWLFLETGLHLE-------------------------DLTETTCQRVLS--SN 266
                    LF   G+ L                             ++T   ++     
Sbjct: 620 SSGAHKGEVLFSILGISLPYEKEFVKDKPFTKGVKEDKLTWEDYKTNKSTIDYIIDNIEL 679

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFP 325
           KK     + +                 L   +N +   L G     G + + R S     
Sbjct: 680 KKDCIDVVVLMKKYAELQTKRNSFTKKLPNLVNKETSTLHGNFNSTG-TASARLSSSAPN 738

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGI 384
            Q LP  +    + D                       V+    +  +   +   D + I
Sbjct: 739 LQQLPSHTSDVNKFD-------------------YHYPVKRAFKSRYKNGIMTELDFSAI 779

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E +++     +   L++F  GED++ +T +  +N     +T ++R   K +         
Sbjct: 780 EMKIIGLYTKDPEMLESFLKGEDIHKSTASIVYNKPVEDITAEERQNTKKVN-------- 831

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                      G +  +F+                                        E
Sbjct: 832 ------FGIAYGESPFSFSGKNNM------------------------------TVEEAE 855

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
            +   +      V    +  H   ++        +   +R                    
Sbjct: 856 EIFNKYFNTKPSVKNSIDATHDFVQK--HGYVEAMQGHQRF------------------- 894

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNAT 618
                   + + +S       Q  R+          I+Q+ +  +    +      +   
Sbjct: 895 --------IRDAQSSDKKKRNQALRQS------FNTIIQSTAGYLTNMALTFIDDFIQQN 940

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASML-YHLMTSNP 655
                IV TVHD I+ +T   D F    +  H+M + P
Sbjct: 941 NIKSKIVATVHDSILIDTHPDDIFIIGKVSKHIMENLP 978



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 19/85 (22%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-----------VMPQ 55
           D ET S     K G          ++ +  + +                        +  
Sbjct: 215 DLETNSLSP-EKKGSKP-------LVLSMSWKNGQGVTIPLYKSDFTWENGQQDIDEILA 266

Query: 56  VLKEALENTDVTIVAHNSYFERTVL 80
           +LKE + + +   VAHN  ++   L
Sbjct: 267 MLKEWVASKEDIKVAHNGQYDINFL 291


>gi|32442281|gb|AAP82211.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 67/428 (15%), Positives = 115/428 (26%), Gaps = 101/428 (23%)

Query: 95  CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            TLVL+           +LK  GE L         G E                      
Sbjct: 1   DTLVLSSLFDPQRKGGHSLKVWGERLGDFKDDYTGGFE---------------------- 38

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL--------SSKEQELWYLDQTINDRGYCVDVA 202
                    YCK DV VT  ++  L            + E  +  +       G+ +D  
Sbjct: 39  -VYTEEMKAYCKQDVKVTELLYNTLLKEGEAFSQASINLEHMVHAIMCEQQANGFELDTD 97

Query: 203 LAHTLNQIVDVERTKLDQELESLTY----------------------------------- 227
           LA  +  +   E  +++ E++                                       
Sbjct: 98  LAQEIYTVCLKETLRIETEIKEFMVPIAVPVKEVTIKRKKDGAIFANQLLEGCNVQGDYT 157

Query: 228 ---GLVSSSRCLEKLKTWLFLETGLHLEDLTETT-----CQRVLSSNKKLTPQAIQVFNN 279
                  +     ++   L  + G +    T++      C   L++     PQA++    
Sbjct: 158 KIMWEEFNLGSPTQINKRL-DKLGWNPTVKTKSGESYKICPENLATIPDDAPQAVKGLKA 216

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                 +        +E    DGR+ GT+   GA  T R +       N+P    + + +
Sbjct: 217 WKVLE-TRWKLAQEWLEKSQGDGRVHGTVITTGA-VTHRAAHRGPNMANIPSVPHNKDGI 274

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
              +               + +   R      EG+ LV  D AGI+ RVLA    +    
Sbjct: 275 FWKMD-------------GMYAAECRQVFKVPEGRLLVGTDAAGIQLRVLAHYMNDP--- 318

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                  +  +     +FN+         R   K    A     G     ++    G   
Sbjct: 319 ----VYTEQVIDGDIHTFNMNALGRHCKDRPTAKTFIYAFLLGAGVGKIAEILGCNGGQA 374

Query: 460 NTFAHLVK 467
           N       
Sbjct: 375 NVAMKNFY 382


>gi|294892786|ref|XP_002774233.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
 gi|239879450|gb|EER06049.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983]
          Length = 842

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/413 (14%), Positives = 105/413 (25%), Gaps = 104/413 (25%)

Query: 273 AIQVFNNRMRASRSA---VLKLNTLVEAM--NSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
             ++  +  R+ R +      L+ L+E +  + DG  R        + TGR        Q
Sbjct: 517 VCRLLWHLQRSIRISAAITSVLSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQ 576

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           N P                                 +R    A  G  L+V D + +E R
Sbjct: 577 NPPSAHNDL-------------------------YSIRKAFSARPGNTLIVGDYSQLELR 611

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ-GGAK 446
           +LA M+  +  ++    G D++       F         +         +   +     +
Sbjct: 612 ILAHMSRCESMIRQLNQGGDIHSQCAVDLF--------PEVAEAVANGSVGRLHSRIDRR 663

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
           A  ++             +    S   +     NF     +     A E     T    +
Sbjct: 664 ATVQVVIDDAEAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRDM 723

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              W      V     E+ +                                     SG 
Sbjct: 724 FTRWNNSKKGVERWKAEILREVRAC--------------------------------SGE 751

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
                 VG    +    +R+  RE T                            G  IV+
Sbjct: 752 FRH-PRVGGRHRHDGHASRRSRRETT--------------------------AHGVKIVM 784

Query: 627 TVHDEIVCETP-DTDEFNASMLYHLMTSN-----PSWAKGLPLKAEGYESKRY 673
            VHDE++ E P +       ++  LM        P +   + L  +      +
Sbjct: 785 QVHDEVILEGPAENATDAVPIVRDLMEHPFADIKPDYRMLINLDVDIATGTNW 837



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/325 (12%), Positives = 76/325 (23%), Gaps = 87/325 (26%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILF-AFG-----FDDHPVELWDCVHDPV-MPQVLKE 59
           D E    ++LT+           ++   AFG     F   P+   DC      +  + + 
Sbjct: 98  DTE-FWNVELTRNTPAH--SSGELLCLTAFGGGKLDFGSGPLLFVDCKGPSRHVLDLFRS 154

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSA---------L 109
             EN     + HN   +  VL   +   I +      T  LAR      +          
Sbjct: 155 YFENPAKRKIFHNFAADAHVL---YGHGITVRGLEADTRYLARLFDSSLSSWEDQVRVSN 211

Query: 110 KAV----GEALKLSSQKMEEG-KELIARFCKGETHECLYDRNKPNH--REAWRLFGEYCK 162
             +            Q+   G  +  +  C       L       H   E +  + +Y  
Sbjct: 212 DLLVCLASRRKNHRRQREVVGVSDGESENCLYRFAGRLGIGGLEAHCSEEKFGEWLKYAA 271

Query: 163 GDVTVTREIFKRLEPLS------------------------------------------- 179
            D   T  +++RL                                               
Sbjct: 272 DDAYFTFMLYRRLTDTLRGQEWCTELHWQPIREKIRHGTTTFNGMNDPETYTGLSMSDFA 331

Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG---------- 228
               +    L   I  RG+  +             +  +  +    +             
Sbjct: 332 VKFYRPFTELLVEIERRGFGANREYLIQQLTAAQADLERHKEAFRMIAQSLKDRRGQPLN 391

Query: 229 ---LVSSSRCLEKLKTWLFLETGLH 250
                 + R  ++++  LF      
Sbjct: 392 PQAEFINPRSAKQIRQLLFGNPDEP 416


>gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 180

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 18/187 (9%)

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    +R   IA +G K+V AD + IE R++A +A ++  + AF  G+D++  T A
Sbjct: 2   PIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAA 61

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
             F +A  QVT +QR   K +   L Y        +   +  L ++            + 
Sbjct: 62  EIFGLALDQVTSEQRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQR 116

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE----LWNELHQAFEQ 530
           +   + F   ++E+  E    +   G          R     +            +    
Sbjct: 117 YPAVQQFMTGIRESASEKGYVETLFGR---------RLYLPEIKSSNAMRRKAAERVAIN 167

Query: 531 TIENGKA 537
               G A
Sbjct: 168 APMQGTA 174


>gi|322786085|gb|EFZ12696.1| hypothetical protein SINV_15346 [Solenopsis invicta]
          Length = 1172

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 91/325 (28%), Gaps = 76/325 (23%)

Query: 180  SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
              E  +      +   G  V++     L+ ++  E   L+ +  +L      +    +++
Sbjct: 910  EVEMRIVTTLACMELSGIGVNLKSLQELSAVISDEMQSLETKAYNLAGRK-FNFSSSKEV 968

Query: 240  KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
               ++                                                 L++   
Sbjct: 969  GQMIY------------------------------------------------PLLKLAQ 980

Query: 300  SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            +D R+RG       + TGR S      QN+P+                            
Sbjct: 981  NDSRIRGNCI--TCTVTGRVSMHEPNLQNVPK--------------------DFNFADNN 1018

Query: 360  ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
            +   VR   + + G  ++ AD   +E R+L   + +    K  +   D++    A+  NV
Sbjct: 1019 LVISVRMAFVPALGNIMLSADYCQLELRLLTHFSQDSVLCKIMKQPGDIFKNIAAKWNNV 1078

Query: 420  APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
               QV  + R   K +   + Y  G K+  +      L ++         S    +    
Sbjct: 1079 TEEQVNNEMRQRTKQLCYGMIYGMGVKSLAE-----NLCVSEPEAQEFLESFMGAYPGIY 1133

Query: 480  NFCRWMQENHPEHAIEDLFIGTACE 504
             +   + E           +G   +
Sbjct: 1134 KWLNDVLEEAHRDGYVATLLGRRRQ 1158


>gi|255928280|gb|ACU41897.1| gp60 [Mycobacterium phage Puhltonio]
          Length = 619

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 103/727 (14%), Positives = 194/727 (26%), Gaps = 215/727 (29%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELW--DCVHDPVMPQVLK 58
           L  D ET    +              +      +   D   V     D   D     ++ 
Sbjct: 52  LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100

Query: 59  E--ALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSN-------GLP 106
           E  AL      ++ HN+ F+   L     L   ++   R + T+VLAR         G  
Sbjct: 101 EMYALAGP---VILHNAPFDIPPL-FHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156

Query: 107 SALKAVG-EALKLSSQK--MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
             L A+    L LS  K  ME   +      +   +E +             ++ +    
Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGM--------DIDSPIYRQGAMA 208

Query: 164 DVTVTREI----------FKRLEPL--------------SSKEQELWYLDQTINDRGYCV 199
           D   T  +          +    P                  ++ +  +    +  G  V
Sbjct: 209 DTVATLALEPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINV 268

Query: 200 DVALAHTLNQIVDVERTKLDQE--LESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTE 256
           D          V  E+     +     L  G    ++ ++ L     L            
Sbjct: 269 DREYLDRYLNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLADLGELPQPWPRTPKGAL 328

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
              +  L    ++ P A    +            L  +       GR    +  LGAS T
Sbjct: 329 RATKADLEYLAEINPLAKAQLSLANIEKTL--GYLTKVSTQAAVTGRCHPQVATLGASAT 386

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      Q  P+ +R                                 ++  +G  L
Sbjct: 387 GRMSYGSPELQQFPKDARP--------------------------------ILCDDGDGL 414

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
              D + IE   +A MA +                                       ++
Sbjct: 415 TSIDWSQIEPVTMANMARD---------------------------------------ID 435

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
               Y+ G   +  +    G++  T   ++ ++                +E+  +     
Sbjct: 436 FLAAYEAGEDLYGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ----- 490

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                    +K+       R ++   ++ +   Q                          
Sbjct: 491 ---------IKRQMFAAMKRSAKWMVKVEEVAAQ-------------------------- 515

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
              ++   GR L   + G                     K     VQ  + D+LA  ++ 
Sbjct: 516 FGRVITAGGRILPVDEGGI-------------------FKAVNYTVQGSAYDVLANTIVE 556

Query: 617 ATKAGY--DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAE-GY 668
             + G   ++ L +HDE+V  TP      A+ +  +M++ P     WA+  P L+ +   
Sbjct: 557 MYRRGMTDELYLAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD 611

Query: 669 ESKRYRK 675
              ++ K
Sbjct: 612 MGSQWLK 618


>gi|255927583|gb|ACU41205.1| gp59 [Mycobacterium phage Colbert]
          Length = 619

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 103/727 (14%), Positives = 195/727 (26%), Gaps = 215/727 (29%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELW--DCVHDPVMPQVLK 58
           L  D ET    +              +      +   D   V     D   D     ++ 
Sbjct: 52  LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100

Query: 59  E--ALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSN-------GLP 106
           E  AL      ++ HN+ F+   L     L   ++   R + T+VLAR         G  
Sbjct: 101 EMYALAGP---VILHNAPFDIPPL-FHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156

Query: 107 SALKAVG-EALKLSSQK--MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
             L A+    L LS  K  ME   +      +   +E +             ++ +    
Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGM--------DIDSPIYRQGAMA 208

Query: 164 DVTVTREI----------FKRLEPL--------------SSKEQELWYLDQTINDRGYCV 199
           D   T  +          +    P                  ++ +  +    +  G  V
Sbjct: 209 DTVATLALEPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINV 268

Query: 200 DVALAHTLNQIVDVERTKLDQE--LESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTE 256
           D          V  E+     +     L  G    ++ ++ L     L            
Sbjct: 269 DREYLDRYLNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLAERGELPQPWPRTPKGAL 328

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
              +  L +   + P A    +            L+ +       GR    +  LGAS T
Sbjct: 329 RATKADLEALATVNPLAKAQLSLANIEKTL--GYLSKVSTQAAVTGRCHPQVATLGASAT 386

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      Q  P+ +R                                 ++  +G  L
Sbjct: 387 GRMSYGSPELQQFPKDARP--------------------------------ILCDDGDGL 414

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
              D + IE   +A MA +                                       ++
Sbjct: 415 TSIDWSQIEPVTMANMARD---------------------------------------ID 435

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
               Y+ G   +  +    G++  T   ++ ++                +E+  +     
Sbjct: 436 FLAAYEAGEDLYGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ----- 490

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                    +K+       R ++   ++ +   Q                          
Sbjct: 491 ---------IKRQMFAAMKRSAKWMVKVEEVAAQ-------------------------- 515

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
              ++   GR L   + G                     K     VQ  + D+LA  ++ 
Sbjct: 516 FGRVITAGGRILPVDEGGI-------------------FKAVNYTVQGSAYDVLANTIVE 556

Query: 617 ATKAGY--DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAE-GY 668
             + G   ++ L +HDE+V  TP      A+ +  +M++ P     WA+  P L+ +   
Sbjct: 557 MYRRGMTDELYLAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD 611

Query: 669 ESKRYRK 675
              ++ K
Sbjct: 612 MGSQWLK 618


>gi|255928521|gb|ACU42136.1| gp59 [Mycobacterium phage UncleHowie]
          Length = 619

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 103/727 (14%), Positives = 195/727 (26%), Gaps = 215/727 (29%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELW--DCVHDPVMPQVLK 58
           L  D ET    +              +      +   D   V     D   D     ++ 
Sbjct: 52  LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100

Query: 59  E--ALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSN-------GLP 106
           E  AL      ++ HN+ F+   L     L   ++   R + T+VLAR         G  
Sbjct: 101 EMYALAGP---VILHNAPFDIPPL-FHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156

Query: 107 SALKAVG-EALKLSSQK--MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
             L A+    L LS  K  ME   +      +   +E +             ++ +    
Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGM--------DIDSPIYRQGAMA 208

Query: 164 DVTVTREI----------FKRLEPL--------------SSKEQELWYLDQTINDRGYCV 199
           D   T  +          +    P                  ++ +  +    +  G  V
Sbjct: 209 DTVATLALEPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINV 268

Query: 200 DVALAHTLNQIVDVERTKLDQE--LESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTE 256
           D          V  E+     +     L  G    ++ ++ L     L            
Sbjct: 269 DREYLDRYLNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLAERGELPQPWPRTPKGAL 328

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
              +  L +   + P A    +            L+ +       GR    +  LGAS T
Sbjct: 329 RATKADLEALATVNPLAKAQLSLANIEKTL--GYLSKVSTQAAVTGRCHPQVATLGASAT 386

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      Q  P+ +R                                 ++  +G  L
Sbjct: 387 GRMSYGSPELQQFPKDARP--------------------------------ILCDDGDGL 414

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
              D + IE   +A MA +                                       ++
Sbjct: 415 TSIDWSQIEPVTMANMARD---------------------------------------ID 435

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
               Y+ G   +  +    G++  T   ++ ++                +E+  +     
Sbjct: 436 FLAAYEAGEDLYGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ----- 490

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                    +K+       R ++   ++ +   Q                          
Sbjct: 491 ---------IKRQMFAAMKRSAKWMVKVEEVAAQ-------------------------- 515

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
              ++   GR L   + G                     K     VQ  + D+LA  ++ 
Sbjct: 516 FGRVITAGGRILPVDEGGI-------------------FKAVNYTVQGSAYDVLANTIVE 556

Query: 617 ATKAGY--DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAE-GY 668
             + G   ++ L +HDE+V  TP      A+ +  +M++ P     WA+  P L+ +   
Sbjct: 557 MYRRGMTDELYLAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD 611

Query: 669 ESKRYRK 675
              ++ K
Sbjct: 612 MGSQWLK 618


>gi|38638464|ref|NP_943839.1| gp61 [Mycobacterium phage PG1]
 gi|109391908|ref|YP_655158.1| gp62 [Mycobacterium phage Orion]
 gi|206600352|ref|YP_002241372.1| gp62 [Mycobacterium phage Chah]
 gi|33334079|gb|AAQ12138.1| gp61 [Mycobacterium phage PG1]
 gi|88910450|gb|ABD58378.1| gp62 [Mycobacterium phage Orion]
 gi|206287440|gb|ACI12782.1| gp62 [Mycobacterium phage Chah]
 gi|282721440|gb|ADA83888.1| gp62 [Mycobacterium phage Fang]
 gi|282721543|gb|ADA83990.1| gp61 [Mycobacterium phage Scoot17C]
          Length = 619

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 103/727 (14%), Positives = 194/727 (26%), Gaps = 215/727 (29%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELW--DCVHDPVMPQVLK 58
           L  D ET    +              +      +   D   V     D   D     ++ 
Sbjct: 52  LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100

Query: 59  E--ALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSN-------GLP 106
           E  AL      ++ HN+ F+   L     L   ++   R + T+VLAR         G  
Sbjct: 101 EMYALAGP---VILHNAPFDIPPL-FHAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156

Query: 107 SALKAVG-EALKLSSQK--MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
             L A+    L LS  K  ME   +      +   +E +             ++ +    
Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGM--------DIDSPIYRQGAMA 208

Query: 164 DVTVTREI----------FKRLEPL--------------SSKEQELWYLDQTINDRGYCV 199
           D   T  +          +    P                  ++ +  +    +  G  V
Sbjct: 209 DTVATLALEPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINV 268

Query: 200 DVALAHTLNQIVDVERTKLDQE--LESLTYGLVSSSRCLEKLKTWLFLETGLH-LEDLTE 256
           D          V  E+     +     L  G    ++ ++ L     L            
Sbjct: 269 DREYLDRYLNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLADLGELPQPWPRTPKGAL 328

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
              +  L    ++ P A    +            L  +       GR    +  LGAS T
Sbjct: 329 RATKADLEYLAEINPLAKAQLSLANIEKTL--GYLTKVSTQAAVTGRCHPQVATLGASAT 386

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
           GR S      Q  P+ +R                                 ++  +G  L
Sbjct: 387 GRMSYGSPELQQFPKDARP--------------------------------ILCDDGDGL 414

Query: 377 VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
              D + IE   +A MA +                                       ++
Sbjct: 415 TSIDWSQIEPVTMANMARD---------------------------------------ID 435

Query: 437 LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
               Y+ G   +  +    G++  T   ++ ++                +E+  +     
Sbjct: 436 FLAAYEAGEDLYGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ----- 490

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                    +K+       R ++   ++ +   Q                          
Sbjct: 491 ---------IKRQMFAAMKRSAKWMVKVEEVAAQ-------------------------- 515

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
              ++   GR L   + G                     K     VQ  + D+LA  ++ 
Sbjct: 516 FGRVITAGGRILPVDEGGI-------------------FKAVNYTVQGSAYDVLANTIVE 556

Query: 617 ATKAGY--DIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS----WAKGLP-LKAE-GY 668
             + G   ++ L +HDE+V  TP      A+ +  +M++ P     WA+  P L+ +   
Sbjct: 557 MYRRGMTDELYLAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD 611

Query: 669 ESKRYRK 675
              ++ K
Sbjct: 612 MGSQWLK 618


>gi|260827865|ref|XP_002608884.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae]
 gi|229294238|gb|EEN64894.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae]
          Length = 196

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 59/213 (27%), Gaps = 46/213 (21%)

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
            E      +         + A          +    ++ ++   VS   ++  +  +   
Sbjct: 13  RERTKRVVYSIMYGVGPEKLATYLNVSAAESKGFISSFLRRFPGVSRFTHKCKEECK--- 69

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                                      +     R  +  ++ +   +L +   Q  R+  
Sbjct: 70  -----------------------AKGHVRTILKRWRLIPNIKSPNFFLRS---QAERQA- 102

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM 646
                   +VQ  + DI    M+   K          +++ +HDE+V E  D +  +   
Sbjct: 103 -----VNFVVQGSAADICKLAMILVGKRLAEEGLKAKLLIQLHDELVFEVADEEVDSVKG 157

Query: 647 LYH-LM-TSNP---SWAKGLPLKAEGYESKRYR 674
           +   +M +           +PL+      K + 
Sbjct: 158 VVRDIMQSDALLGGQIKLQVPLRVSVSVGKSWG 190


>gi|325115196|emb|CBZ50752.1| hypothetical protein NCLIV_012190 [Neospora caninum Liverpool]
          Length = 1235

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/412 (12%), Positives = 95/412 (23%), Gaps = 92/412 (22%)

Query: 291  LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-------------PSRSHE 337
               L    +   R+         + TGR S      QN+P+              S    
Sbjct: 881  YPALYPTKHP--RVFTRWNQTR-TVTGRLSSSYPNLQNIPKVMVLPSLSSLTSSSSSCSS 937

Query: 338  ELDQIITHLPTSITSDPDPLQIISDCVRSCVI--ASEGK-KLVVADLAGIEARVLAWMAG 394
                      +  +S        +   R        +G   +V AD A IE R+LA   G
Sbjct: 938  SSPSSDVSPSSPSSSRLRYTLPKTVNCREAFRDDVQDGSAVVVAADYAQIEMRLLAHFCG 997

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            +          +                +    +  I    E+A  Y             
Sbjct: 998  KGPLQSLLTGRDTREARGS-----APDDESETSKEPIDLYREMAALY------------- 1039

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                        +      +                  A +      A    +  +    
Sbjct: 1040 ------AEIPPSQVTKELRDKVKVTCLALIYGSGTCTIARQMNISLAAASAFRSKFLFVF 1093

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              VS     +     +                          +  +   +GR     +  
Sbjct: 1094 PDVSHFIRSIVAKGRE--------------------------DGFVTTLTGRRRYIPEAK 1127

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----------D 623
            +N S++     +L            + +Q  + DI+   MM                   
Sbjct: 1128 SNSSHVRALGERL---------SVNSCIQGSASDIMKIAMMRLQAELLSFPWDPHALPPR 1178

Query: 624  IVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            ++L+VHDE+V           S  +   +T N      +PL         + 
Sbjct: 1179 VLLSVHDELVMHCSLKHLQPLSKMIRKCLTENMPV--DVPLDVSISAGPTWG 1228



 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 19/143 (13%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
               + ++PL ++E  +  L   ++  G  +       L   +D     +++E+      
Sbjct: 674 LRCHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDEALVAVEKEVNRTAGT 733

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLT------------------ETTCQRVLSSNKKLT 270
                    +L   LF    L L   T                   +T + +L     L 
Sbjct: 734 SSVQVSSPAQLSNLLFDHLALPLPARTFAAVRGNRPRRAAKRTLARSTAEEILQEIVDLH 793

Query: 271 PQAIQVFNNRMRASRSAVLKLNT 293
           P    + N R   ++     L +
Sbjct: 794 PVVPLIQNFR-SLAKLRSTYLES 815


>gi|227544274|ref|ZP_03974323.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185748|gb|EEI65819.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 93

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
            T ++  R  TYG KL ENIVQA SRD+LAE M      G  +V+ +HDE V + P    
Sbjct: 1   NTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAP--FN 58

Query: 642 FNASMLYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
            +   +  LMT  P WA GL L A G+ S  Y+K
Sbjct: 59  RSLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 92


>gi|221501798|gb|EEE27554.1| DNA polymerase I, putative [Toxoplasma gondii VEG]
          Length = 932

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/399 (14%), Positives = 98/399 (24%), Gaps = 128/399 (32%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              L    +   R+         + TGR S      QN+P+                   
Sbjct: 640 YPALYPTKHP--RVFTRWNQTR-TVTGRLSSSYPNLQNIPK------------------- 677

Query: 351 TSDPDPLQIISDCVRSCVI--ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                     +   R        +G   +V AD A IE R+L         +       D
Sbjct: 678 ----------AVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVREKSFSSLVHTRCAPID 727

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           LY    +    +   +VTK+ R   KV  LAL Y  G                       
Sbjct: 728 LYREMASLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI------------------- 768

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A +      A    +  +      VS     +   
Sbjct: 769 -------------------------ARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAK 803

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +                          +  +   +GR     +  +N S++     +L
Sbjct: 804 GRE--------------------------DGFVTTLTGRRRYVPEAKSNSSHVRALGERL 837

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----------DIVLTVHDEIVCET 636
                       + +Q  + DI+   MM                   ++L+VHDE+V   
Sbjct: 838 ---------SVNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALPPRLLLSVHDELVLHC 888

Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             +     S  +   +T N      +PL         + 
Sbjct: 889 SLSHLAPLSKMIKSSLTENMPV--DVPLDVSISAGPTWG 925



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 109/390 (27%), Gaps = 61/390 (15%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
               + ++PL ++E  +  L   ++  G  +       L   +D     +++E+  +   
Sbjct: 435 LRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGT 494

Query: 229 LVSSSRCLEKLKTWLFLETGLHLE---------------DLT--ETTCQRVLSSNKKLTP 271
                    +L + LF    L L                  T   +T + VL     L P
Sbjct: 495 SCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHP 554

Query: 272 QAIQVFNNRMRASRSAVLKLN--------TLVEAMNSDGR-LRGTLQFLG---------- 312
               + N R   ++     L         +       +G   +   +             
Sbjct: 555 VVPLIQNFR-SLAKLRSTYLESTAALSLSSSCALSAPEGAPFKVAFKLYDREEETCEPAS 613

Query: 313 --ASRTGRWSGCVFPPQNL------------PRPSRSHEELDQIITHLPTSITSDPDPLQ 358
              ++TG   G                    P               +   ++S    LQ
Sbjct: 614 DSETQTGEEGGKASDTHTCFADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQ 673

Query: 359 IISDCV--RSCVI--ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
            I   V  R        +G   +V AD A IE R+L         +       DLY    
Sbjct: 674 NIPKAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVREKSFSSLVHTRCAPIDLYREMA 733

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +    +   +VTK+ R   KV  LAL Y  G            +N++  A     +    
Sbjct: 734 SLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI-----ARQMNISLAAASAFRSKFLF 788

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            + D  +F R +     E        G   
Sbjct: 789 VFPDVSHFIRSIIAKGREDGFVTTLTGRRR 818


>gi|328479632|gb|EGF48820.1| DNA polymerase I [Lactobacillus rhamnosus MTCC 5462]
          Length = 105

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 18/112 (16%)

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GY 622
               + +         +   R            +Q  + DI+   M+   KA        
Sbjct: 1   YLPQIHSRNF---NLRKFAERTAMNTP------IQGSAADIIKVAMIRMQKALDEAHLQA 51

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
            ++L VHDE++ E P  +      L   +M S  S A  +PLK E +    +
Sbjct: 52  KMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLA--VPLKVESHYGPTW 101


>gi|221480621|gb|EEE19073.1| DNA polymerase I, putative [Toxoplasma gondii GT1]
          Length = 935

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/399 (14%), Positives = 98/399 (24%), Gaps = 128/399 (32%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              L    +   R+         + TGR S      QN+P+                   
Sbjct: 643 YPALYPTKHP--RVFTRWNQTR-TVTGRLSSSYPNLQNIPK------------------- 680

Query: 351 TSDPDPLQIISDCVRSCVI--ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                     +   R        +G   +V AD A IE R+L         +       D
Sbjct: 681 ----------AVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVGEKSFSSLVHTRCAPID 730

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           LY    +    +   +VTK+ R   KV  LAL Y  G                       
Sbjct: 731 LYREMASLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI------------------- 771

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A +      A    +  +      VS     +   
Sbjct: 772 -------------------------ARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAK 806

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +                          +  +   +GR     +  +N S++     +L
Sbjct: 807 GRE--------------------------DGFVTTLTGRRRYVPEAKSNSSHVRALGERL 840

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----------DIVLTVHDEIVCET 636
                       + +Q  + DI+   MM                   ++L+VHDE+V   
Sbjct: 841 ---------SVNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALPPRLLLSVHDELVLHC 891

Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             +     S  +   +T N      +PL         + 
Sbjct: 892 SLSHLAPLSKMIKSSLTENMPV--DVPLDVSISAGPTWG 928



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 109/390 (27%), Gaps = 61/390 (15%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
               + ++PL ++E  +  L   ++  G  +       L   +D     +++E+  +   
Sbjct: 438 LRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGT 497

Query: 229 LVSSSRCLEKLKTWLFLETGLHLE---------------DLT--ETTCQRVLSSNKKLTP 271
                    +L + LF    L L                  T   +T + VL     L P
Sbjct: 498 SCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHP 557

Query: 272 QAIQVFNNRMRASRSAVLKLN--------TLVEAMNSDGR-LRGTLQFLG---------- 312
               + N R   ++     L         +       +G   +   +             
Sbjct: 558 VVPLIQNFR-SLAKLRSTYLESTAALSLSSSCALSAPEGAPFKVAFKLYDREEETCEPAS 616

Query: 313 --ASRTGRWSGCVFPPQNL------------PRPSRSHEELDQIITHLPTSITSDPDPLQ 358
              ++TG   G                    P               +   ++S    LQ
Sbjct: 617 DSETQTGEEGGKASDTHTCFADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQ 676

Query: 359 IISDCV--RSCVI--ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
            I   V  R        +G   +V AD A IE R+L         +       DLY    
Sbjct: 677 NIPKAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVGEKSFSSLVHTRCAPIDLYREMA 736

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +    +   +VTK+ R   KV  LAL Y  G            +N++  A     +    
Sbjct: 737 SLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI-----ARQMNISLAAASAFRSKFLF 791

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            + D  +F R +     E        G   
Sbjct: 792 VFPDVSHFIRSIIAKGREDGFVTTLTGRRR 821


>gi|237845437|ref|XP_002372016.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
 gi|211969680|gb|EEB04876.1| DNA polymerase I, putative [Toxoplasma gondii ME49]
          Length = 938

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/399 (14%), Positives = 98/399 (24%), Gaps = 128/399 (32%)

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              L    +   R+         + TGR S      QN+P+                   
Sbjct: 646 YPALYPTKHP--RVFTRWNQTR-TVTGRLSSSYPNLQNIPK------------------- 683

Query: 351 TSDPDPLQIISDCVRSCVI--ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
                     +   R        +G   +V AD A IE R+L         +       D
Sbjct: 684 ----------AVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVGEKSFSSLVHTRCAPID 733

Query: 408 LYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
           LY    +    +   +VTK+ R   KV  LAL Y  G                       
Sbjct: 734 LYREMASLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI------------------- 774

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                                    A +      A    +  +      VS     +   
Sbjct: 775 -------------------------ARQMNISLAAASAFRSKFLFVFPDVSHFIRSIIAK 809

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             +                          +  +   +GR     +  +N S++     +L
Sbjct: 810 GRE--------------------------DGFVTTLTGRRRYVPEAKSNSSHVRALGERL 843

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----------DIVLTVHDEIVCET 636
                       + +Q  + DI+   MM                   ++L+VHDE+V   
Sbjct: 844 ---------SVNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALPPRLLLSVHDELVLHC 894

Query: 637 PDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
             +     S  +   +T N      +PL         + 
Sbjct: 895 SLSHLAPLSKMIKSSLTENMPV--DVPLDVSISAGPTWG 931



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 109/390 (27%), Gaps = 61/390 (15%)

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
               + ++PL ++E  +  L   ++  G  +       L   +D     +++E+  +   
Sbjct: 441 LRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGT 500

Query: 229 LVSSSRCLEKLKTWLFLETGLHLE---------------DLT--ETTCQRVLSSNKKLTP 271
                    +L + LF    L L                  T   +T + VL     L P
Sbjct: 501 SCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHP 560

Query: 272 QAIQVFNNRMRASRSAVLKLN--------TLVEAMNSDGR-LRGTLQFLG---------- 312
               + N R   ++     L         +       +G   +   +             
Sbjct: 561 VVPLIQNFR-SLAKLRSTYLESTAALSLSSSCALSAPEGAPFKVAFKLYDREEETCEPAS 619

Query: 313 --ASRTGRWSGCVFPPQNL------------PRPSRSHEELDQIITHLPTSITSDPDPLQ 358
              ++TG   G                    P               +   ++S    LQ
Sbjct: 620 DSETQTGEEGGKASDTHTCFADAARDYPALYPTKHPRVFTRWNQTRTVTGRLSSSYPNLQ 679

Query: 359 IISDCV--RSCVI--ASEGK-KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
            I   V  R        +G   +V AD A IE R+L         +       DLY    
Sbjct: 680 NIPKAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVGEKSFSSLVHTRCAPIDLYREMA 739

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +    +   +VTK+ R   KV  LAL Y  G            +N++  A     +    
Sbjct: 740 SLYAEIPSHEVTKELRDKVKVTCLALIYGSGTCTI-----ARQMNISLAAASAFRSKFLF 794

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            + D  +F R +     E        G   
Sbjct: 795 VFPDVSHFIRSIIAKGREDGFVTTLTGRRR 824


>gi|313233190|emb|CBY24305.1| unnamed protein product [Oikopleura dioica]
          Length = 1902

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/504 (11%), Positives = 134/504 (26%), Gaps = 136/504 (26%)

Query: 167  VTREIFKRLEPLSSKEQELWYLDQTIND---------RGYCVDVALAHTLNQIVDVERTK 217
            V R  +  ++ +             +            G     + +    + +     +
Sbjct: 1487 VLRRCYLGVKKILEDRNLENKFIAEMEHAEIIFQMSENGMPFSESASEKTIKSLSTLMDR 1546

Query: 218  LDQELESLT--YGLVSSSRCL----EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
            L  +++          S        ++   + FL+       ++ +  + VL   ++  P
Sbjct: 1547 LAIKMKKHAPKGMKRDSLNFNHLLDQRKYVYDFLKCQPLEGKVSLSVSKEVLEVLEEKEP 1606

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            +   +   R  A ++    L    +  + D R+  T   +  +RTGR S      Q    
Sbjct: 1607 RIRNLIEFRR-AQKAFSDLLT--YKNASRDDRIYST--PVLINRTGRISMDNPSLQ---- 1657

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                              +  +          VR+C  A+  K  +  D   +E RVLA 
Sbjct: 1658 ------------------MVQNEFECCGKIIKVRNCFRANPKKIFISVDYRQLELRVLAL 1699

Query: 392  MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
            ++G++    +F   ED +V+   +                                    
Sbjct: 1700 LSGDEGLQASFIDHEDPFVSIGRKWL---------------------------------- 1725

Query: 452  ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                           + + A         +       +   +          + +   + 
Sbjct: 1726 ------------KRERISVAQRTQVKGLVYGVIYGMGNKTLSTTLGVSIEEAKNISSEFM 1773

Query: 512  QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
              +  + +   ++ ++                            +NL      GR   + 
Sbjct: 1774 SSYPGMQKFLVDVDKSA--------------------------SSNLYTETLIGRRRSFD 1807

Query: 572  DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIV 625
            +           T +  R            +Q  + DI+  G + A +          +V
Sbjct: 1808 N----------YTSRAARVA------VNTKIQGSAADIVKIGTVRAARKIKETGINAKLV 1851

Query: 626  LTVHDEIVCETPDTDEFNASMLYH 649
            L +HDE++ E  ++ +     +  
Sbjct: 1852 LQIHDELLFEVEESQKGLLEDILK 1875


>gi|71755431|ref|XP_828630.1| DNA polymerase theta [Trypanosoma brucei TREU927]
 gi|70834016|gb|EAN79518.1| DNA polymerase theta, putative [Trypanosoma brucei]
          Length = 896

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 104/382 (27%), Gaps = 95/382 (24%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +         + TGR        Q +P       +  Q  T++    +            
Sbjct: 585 VHPHWAVHH-TSTGRLYCSRPNLQTVP-------KTAQKCTYVSPLTSDYGLLFTNPEWT 636

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R     + G  L+  D   +E RVLA ++G++  +K   +  D+          ++  +
Sbjct: 637 MRHLYGPAPGCVLLSFDFNQMELRVLAHLSGDELLIKHLSSEYDVLSAMTRHITGLSDDE 696

Query: 424 V-TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R   KV+   L Y  G      M     + +++   +  +              
Sbjct: 697 QVPPHLRETVKVVVYGLFYGMG---LATMKERVKILMDSAHSVPSSQRKF---------- 743

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + + +A+ Q++    +    L +A  +     + +    
Sbjct: 744 -------------------TADTLLRAFHQRYPAAGKF---LTRARIRAFHEARCVTLTG 781

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
             D+                  G       +                           I+
Sbjct: 782 INDLSSEK-------------DGNRRRQHSIA-------------------------RIL 803

Query: 603 QAVSRDILAEGMMNATKAGYDI-----------VLTVHDEIVCETPDTDEFNAS-MLYHL 650
           Q  S  +    M+   +  +DI           VL +HDE++    +      +  +  +
Sbjct: 804 QGSSSTLFQSAMVKVHERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVARKIKGI 863

Query: 651 M-TSNPSWAKGLPLKAEGYESK 671
           M      ++  +PL+      K
Sbjct: 864 MVEQAQVFSLRVPLRVSVKVGK 885


>gi|32442299|gb|AAP82220.1| DNA polymerase [Podovirus GOM]
          Length = 396

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 60/413 (14%), Positives = 107/413 (25%), Gaps = 119/413 (28%)

Query: 95  CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            TLVL+R          +L+A GE L                             +  + 
Sbjct: 1   DTLVLSRLYNPQMEGGHSLRAWGERLGF------------------------RKGDHDDW 36

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------QELWYLDQTINDRGYCVDVA 202
                   EYC+ D+ VT +++  L     +          E+  +       G+ +DV 
Sbjct: 37  STLSDEVIEYCERDLDVTAKLYTELTEKLEEFQGESIELEHEVQRIITEQEKTGWKLDVK 96

Query: 203 LAHTLNQIVDVERTKLDQELESLT------------------------------------ 226
            A  +   +     ++++E+                                        
Sbjct: 97  RAFDIQAKLKQRSMEVEREVHKTFTPLPVFDKEVTPKYNKDGSLSVVGLKFLGDRYTDVA 156

Query: 227 ------YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVF 277
                      +    +++   L           E       + VLS      P+A  + 
Sbjct: 157 GPFSRVSFPEFNLGSRQQIARHLQFFGWKPKLFTEKGQAIVDEGVLSRV--DIPEAKLIA 214

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHE 337
                  +    ++ + +EA+  DGR+ G +  +GA  TGR +        +P       
Sbjct: 215 EY--LLIQKRTAQVQSWIEAVEEDGRVHGRVNPIGA-VTGRMTHSSPNMAQVP------- 264

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                      R C    +G +LV  D AG+E R+LA    ++ 
Sbjct: 265 -----------------ASYSPYGTECRECWTVPKGYRLVGIDAAGLELRMLAHYMNDEE 307

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
                         T                R + K    A  Y  G      
Sbjct: 308 YTN---------EVTNGDVHTTNQKNAGLATRDLAKTFIYAFLYGAGDAKIGA 351


>gi|269964624|ref|ZP_06178862.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269830523|gb|EEZ84744.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 676

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 93/690 (13%), Positives = 182/690 (26%), Gaps = 187/690 (27%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL- 99
              + +  +  + P+   ++L +  VT V H++  +   +     L+     W  T +  
Sbjct: 106 HSFVINVANPSIRPK--LQSLFDLPVTYVTHDAKPDLHCI-WSLGLN-ESRYWWDTCIAE 161

Query: 100 -ARSNGLP----------------------------SALKAVGEALKLSSQKMEEGKELI 130
            AR  G                                L    +   + S      K L+
Sbjct: 162 KARYLGQHNNAKSTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSGLASSAKLLM 221

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKG-DVTVTREIFKRLEPLSSKEQELWYLD 189
                  +   L        + +  +   Y       +   I + L    S E      +
Sbjct: 222 GSEQDCPSFSALQIEQ--TSQLSITVAKLYLTQSQSCLMFGIHQHL---ISIEMPWVVTN 276

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
             I   G+ V       + +  + + +   Q L  L      +    +  K  LF   GL
Sbjct: 277 AAIEWNGFKVCRDKCRQILEACERKLSLYSQGLAQLGMT---NPNS-QHQKQVLFASLGL 332

Query: 250 HLEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE--AMNSDGRL 304
                     +  + +LS N  L P    +       +    +  + +++   + SDGR+
Sbjct: 333 LHHFKDGDDYSFQREMLSKNYALHPAVAFLAKY----THIDSVYKDVILQPGIVGSDGRV 388

Query: 305 RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
               + L A+ TGR +        LP                                 +
Sbjct: 389 HSEQKQLTAA-TGRQATVAPNILGLP-------------------------------AVL 416

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE-----------DLYVTTY 413
           R  V+A +G  +   DLA IE  + A + G+   +K +  G+           +     Y
Sbjct: 417 RPLVVAQDGYVIGEVDLAQIEVAIAAGVYGDSNLVKMYNQGDLYTAMAQEFFCEELEPEY 476

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +   +    +   ++RAI K   L L Y   +                            
Sbjct: 477 STCDSAVFKEKYPEKRAIMKQCTLGLIYGITSFGI------------------------- 511

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                              A +          +   +      + +  +++ Q     + 
Sbjct: 512 -------------------AKKLNISVNKATELMDKFLSMFPELQKAIDKMPQY--GALR 550

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
              +      R                     R L  +     ++++             
Sbjct: 551 GHVSTATGLHRY--------------------RQLDAKRGHTEKNWM------------- 577

Query: 594 GGKLTENIVQAVSRDILAEGMMNATK--AGYDIVLTV--HDEIVCETPDTDEFNASML-Y 648
                   VQ  +  +         +    Y+ +L V  HD  V E P       S L  
Sbjct: 578 ----VNMPVQGTAAALFKAAGNRLHQLYKSYNAILIVAMHDAFVFEAPKECLNEVSELTA 633

Query: 649 HLMTSNP-SWAKGLPLKAEGYES--KRYRK 675
            +MT         L ++A+   S    + K
Sbjct: 634 QIMTQVVQEMYPQLKIRADINISQPDCWTK 663


>gi|309801255|ref|ZP_07695384.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
 gi|308222144|gb|EFO78427.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022]
          Length = 727

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 89/295 (30%), Gaps = 18/295 (6%)

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
           L     + +P      T +           +++ +A         E +   A     +  
Sbjct: 426 LLESVGITLPT-PLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTLDLD 484

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS-KEQELWYLDQTINDRGYC 198
           +     N                 +V       +    L    E  +  +   +   G  
Sbjct: 485 DMDGSSNTQADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHAGAQ 544

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257
           VD+     +      +  +  QE+   + G   + +  ++L+  LF + GL     T++ 
Sbjct: 545 VDMIRLTEMRDQFAAD-ARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTKSG 603

Query: 258 ---TCQRVLSSNKKL-------TPQAIQVFNNRMRASRSAVLKLNTLVEAMNS-DGRLRG 306
              T    L +  +              +  +R       +  + TL++A N  DGR+  
Sbjct: 604 SYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI--VQTLIDATNPRDGRIHT 661

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           T +   A+ TGR S      QN+P  + +  E+         +        +  S
Sbjct: 662 TFEQTVAA-TGRLSSVDPNLQNIPNRNAAGREIRSAFVPGRDTSRCSAPTTRRWS 715


>gi|167945573|ref|ZP_02532647.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 161

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 11/137 (8%)

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           + +   V  N  ++ +VL     +++       T++ +      ++        +     
Sbjct: 1   DPEQKKVGQNLKYDMSVLARY-GIELRGIA-FDTMLESYVLDSTAS--------RHDMDS 50

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           + + K L       E       +     +        Y   D  +T  + + L P    E
Sbjct: 51  LAK-KYLHYDTIHFEDVAGKGKKQLTFDQIPLESAAPYAAEDADITLRLHQTLWPRLQAE 109

Query: 183 QELWYLDQTINDRGYCV 199
             L  L   +      V
Sbjct: 110 PTLASLTTDLEVPLVPV 126


>gi|71662488|ref|XP_818250.1| DNA polymerase theta (polymerase domain only) [Trypanosoma cruzi
           strain CL Brener]
 gi|70883490|gb|EAN96399.1| DNA polymerase theta (polymerase domain only), putative
           [Trypanosoma cruzi]
          Length = 881

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 100/387 (25%), Gaps = 101/387 (26%)

Query: 295 VEAMNSDGRL----RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
              + +  RL            A+ +  +       Q + +           I+    S 
Sbjct: 560 PHHVGAQYRLFFSVHAKWSVHHATTSRLFCSR-PCLQTVAKNPP--------ISRTAPSS 610

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
           +            +R       G  LV  D   IE RV+A ++G+   ++    G D+  
Sbjct: 611 SPPVTIFTNPEWTLRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRGGSDVLA 670

Query: 411 TTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
               R   +   A VT   R   KV+   L Y  G ++               A     +
Sbjct: 671 EMALRVMQLPRLADVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKETTPSAEQPPLS 730

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                                              +  +++ Q +  V            
Sbjct: 731 ---------------------------------ARQFLRSFNQCYPAVQGFLRSTR---L 754

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
           +     +       RD+        +  + + L                           
Sbjct: 755 RAFHEKRCTTLNGLRDLSGEPDGNRRKQMAVAL--------------------------- 787

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD-----------IVLTVHDEIVCETPD 638
                       +Q  +  IL   M+   +  ++           +VL+VHDE+V   PD
Sbjct: 788 -----------AIQGGAAVILHHAMVEVHEKRHELLPFLPAAAVALVLSVHDELVYAVPD 836

Query: 639 TDEFNAS-MLYHLMT-SNPSWAKGLPL 663
           +     +  +  ++     + +  +PL
Sbjct: 837 SAVSIVAPKIKQILEQQAAALSLSVPL 863


>gi|289976608|gb|ADD21653.1| DNA polymerase [Caulobacter phage Cd1]
          Length = 797

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/495 (10%), Positives = 136/495 (27%), Gaps = 107/495 (21%)

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT--------ETTCQRV 262
               + K + + + +T   +S  +   +  T+ F +                  +    V
Sbjct: 324 FSSGKNKGEFKTKQITVDDLSKPKSRLEDFTYRFPQM--TEPKKQWEGSTPGVYSVSADV 381

Query: 263 LSSNKKLTPQAIQVFNNRMRASRSAVLKL----------NTLVEAMNSDGRLRGTLQFLG 312
           +          ++        ++                  ++  + +DG +   L    
Sbjct: 382 IKGLANRGIPFLESLAKVEGLAKDLGTYYVVTDPDTGQQKGMLTLVQADGIIHHMLN-HT 440

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA-- 370
           ++ T R+S      QNLP+  +S                            V+S  I+  
Sbjct: 441 STVTARFSSSNPNLQNLPKDGKS---------------------------LVKSVFISRF 473

Query: 371 -SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
             EGK  + +D   +E  + A +   +  +   + G D++    +++  +   +      
Sbjct: 474 GPEGKV-IQSDFTALEVYIQAILTDCRQLILDLKDGLDMHCVRVSQAEGIPYEE------ 526

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
                                      L +      VK  S         +F R      
Sbjct: 527 ------------------------AYRLCVVE---KVKEWSTKRTKAKIFSFQRAYGAGA 559

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
              A          + + +A   ++  + + +    +  ++ + N        +    L 
Sbjct: 560 ALIAESTGMAREEVDALIEAENTRYPEIEKFY---ERLTKKIMANSVPTNKFAQHP-DLP 615

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG-KLTENIVQAVSRD 608
           ++  +        P G+   YR+             +     ++   ++   +VQ    +
Sbjct: 616 HLTCNFRKSTYQTPDGKLYSYRESPAPEFLAKAPASRGGCTTSFSPTEIKNYVVQGGGGE 675

Query: 609 ILAEGM-MNATKAGYD--------IVLTVHDEIVCETPDT-DEFNASMLYHLMTSNPS-- 656
                M +                +V  VHD +  +         A++L+  M +     
Sbjct: 676 WAKAAMWLAIRAFYARGNFGGRGLLVNQVHDALYADAAKEVALEVAALLHACMEAASEFM 735

Query: 657 -----WAKGLPLKAE 666
                W   +P+ ++
Sbjct: 736 EYYFDWEVKVPVPSD 750


>gi|150404389|gb|ABR68508.1| DNA polymerase I [Lactobacillus casei]
 gi|225349760|gb|ACN87805.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 77/254 (30%), Gaps = 41/254 (16%)

Query: 57  LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108
           +K  LE+         +  + TV              + +P       L+ +        
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--- 165
              +G+       +  +  +L               R  P   + +  F    K D    
Sbjct: 60  SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFAR--KSDALFA 109

Query: 166 ---TVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
               +T ++ K+ +     + E+    +   +  +G  ++      +          L++
Sbjct: 110 LRPDLTGDLKKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKALKAMGTEFSQSIKILEE 169

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           ++ +       +    ++L   LF +  L +   T+   +T   VL+  K  +P    + 
Sbjct: 170 KIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 278 NNRMRASRSAVLKL 291
           + R   ++     +
Sbjct: 229 DYR-GWAKLNSTYV 241


>gi|261334514|emb|CBH17508.1| DNA polymerase theta, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 846

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 103/382 (26%), Gaps = 95/382 (24%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +         + TGR        Q +P       +  Q  T++    +            
Sbjct: 535 VHPHWAVHH-TSTGRLYCSRPNLQTVP-------KTAQKCTYVSPLTSDYGLLFTNPEWT 586

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R     + G  L+  D   +E RVLA ++G++  ++   +  D+          ++  +
Sbjct: 587 MRHLYGPAPGCVLLSFDFNQMELRVLAHLSGDELLIQHLSSEYDVLSAMTRHLTGLSDDE 646

Query: 424 V-TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R   KV+   L Y  G    ++                                
Sbjct: 647 QVPPHLRETVKVVVYGLFYGMGLATMKE-------------------------------- 674

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
           R        H++         + + +A+ Q++    +    L +A  +     + +    
Sbjct: 675 RVKILMDSAHSVPSSQRKITADTLLRAFHQRYPAAGKF---LTRARIRAFHEARCVTLTG 731

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
             D+                  G       +                           I+
Sbjct: 732 INDLSSEK-------------DGNRRRQHSIA-------------------------RIL 753

Query: 603 QAVSRDILAEGMMNATKAGYDI-----------VLTVHDEIVCETPDTDEFNAS-MLYHL 650
           Q  S  +    M+   +  +DI           VL +HDE++    +      +  +  +
Sbjct: 754 QGSSSTLFQSAMVKVHERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVAREIKGI 813

Query: 651 M-TSNPSWAKGLPLKAEGYESK 671
           M      ++  +PL+      K
Sbjct: 814 MVEQAQVFSLRVPLRVSVKVGK 835


>gi|115475033|ref|NP_001061113.1| Os08g0175600 [Oryza sativa Japonica Group]
 gi|113623082|dbj|BAF23027.1| Os08g0175600 [Oryza sativa Japonica Group]
          Length = 570

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 79/295 (26%), Gaps = 62/295 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF---------GFDDHPVELWD--CVHDPVM 53
             D E  + ID+ +           VI F+           F +    +W         +
Sbjct: 280 ACDTE-VANIDVKEETP---VGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDV 335

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGLP------ 106
                   E+  +  V HN  F+  V++ C    I +  +   T+ LAR           
Sbjct: 336 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 392

Query: 107 SALKAVGEALKLSSQKMEEGKELIA------RFCKGETHECLYDRNKPNHR------EAW 154
            +L+ +    ++ +  +++  +            K         +            E  
Sbjct: 393 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDR 452

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS--------------------SKEQELWYLDQTIND 194
            L+  Y   D   T ++++ L+                          +    L   +  
Sbjct: 453 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 512

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLT-----YGLVSSSRCLEKLKTWLF 244
            G  VD A    + +   VER     +               +     +++   F
Sbjct: 513 EGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFF 567


>gi|154338261|ref|XP_001565355.1| DNA polymerase theta (polymerase domain only) [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134062404|emb|CAM42265.1| putative DNA polymerase theta (polymerase domain only) [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 977

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/404 (15%), Positives = 111/404 (27%), Gaps = 114/404 (28%)

Query: 314 SRTGRWSGCVFPPQNLPR------------------------------------PSRSHE 337
           + TGR    +   QNLP+                                    P+    
Sbjct: 613 TSTGRIFSALPNVQNLPKQPPRTAFPIHALSATQDRSSNGGGDESLRPYGYVDSPTEEDV 672

Query: 338 E----LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           +    L +       S        +     +R    A  G  LV  D   +E R+LA ++
Sbjct: 673 DRWLSLAEAGVIDQASSAQFLLFPEHPQWTLRHLYCAPPGCVLVSFDFNQLELRLLAHLS 732

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           G+    +   +  D+     A    +     V  +QR   KV+   L Y  G +      
Sbjct: 733 GDSALQEHLSSNVDVLALVTASVLRLPSIDHVRPEQRQAVKVIVYGLLYGMGPELM---- 788

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                        V+     EE+  AE   +  +E     +  +         + + +  
Sbjct: 789 ------------DVRIRKINEEFATAEQQQQHDREGAASSSDPESAS---ARDLLRRFYH 833

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
            + RV     E  Q  +                           +L++   SGR  +  +
Sbjct: 834 AYPRVESYLRETRQEAQN--------------------------SLVVETLSGRKTLLAE 867

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----------AG 621
              NR       +                VQ  + D+L   M    +           A 
Sbjct: 868 TDANRRKQRAIAQA---------------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAP 912

Query: 622 YDIVLTVHDEIVCETPDTDEFNASM-LYHLMT-SNPSWAKGLPL 663
             +V+++HDE+V  TP          +  ++          +PL
Sbjct: 913 LALVMSIHDELVYATPRVAIDEVVRGVQRILEDQARVLRLAVPL 956


>gi|150404371|gb|ABR68499.1| DNA polymerase I [Lactobacillus casei]
 gi|150404379|gb|ABR68503.1| DNA polymerase I [Lactobacillus casei]
 gi|225349754|gb|ACN87802.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 77/254 (30%), Gaps = 41/254 (16%)

Query: 57  LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108
           +K  LE+         +  + TV              + +P       L+ +        
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--- 165
              +G+       +  +  +L               R  P   + +  F    K D    
Sbjct: 60  SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFAR--KSDALFA 109

Query: 166 ---TVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
               +T ++ K+ +     + E+    +   +  +G  ++      +          L++
Sbjct: 110 LRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           ++ +       +    ++L   LF +  L +   T+   +T   VL+  K  +P    + 
Sbjct: 170 KIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 278 NNRMRASRSAVLKL 291
           + R   ++     +
Sbjct: 229 DYR-GWAKLNSTYV 241


>gi|86563272|ref|NP_498250.3| POLQ (DNA polymerase theta) homolog family member (polq-1)
            [Caenorhabditis elegans]
          Length = 1661

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 94/332 (28%), Gaps = 53/332 (15%)

Query: 179  SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
               E E       I   G   D AL ++    +  +   L++ +  L      +     +
Sbjct: 1271 LQLEMESCQTVLNIFYSGIVFDQALCNSFIYKIRKQIENLEENIWRL-AYGKFNIHSSNE 1329

Query: 239  LKTWLFLETGL--HLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   LF   GL        +       T + +L       P   ++   R          
Sbjct: 1330 VANVLFYRLGLIYPETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQ----IQHTL 1385

Query: 291  LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
               L+      GR+    +    + TGR    V   QN+P+   S               
Sbjct: 1386 TQCLMPLAKFIGRIHCWFEMC--TSTGRILTSVPNLQNVPKRISSD-------------- 1429

Query: 351  TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                          R   IA+    L+ AD   +E RVLA ++ +   +    +  DL+ 
Sbjct: 1430 ----------GMSARQLFIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFE 1479

Query: 411  TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
                +             R   K +   L Y  GAK+  ++       ++         +
Sbjct: 1480 ELSIQWN---------FPRDAVKQLCYGLIYGMGAKSLSELTR-----MSIEDAEKMLKA 1525

Query: 471  APEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                +    ++    +E   +       IG  
Sbjct: 1526 FFAMFPGVRSYINETKEKVCKEEPISTIIGRR 1557



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 65/221 (29%), Gaps = 42/221 (19%)

Query: 458  NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            + + F  L    + P +      +           +          E++ KA+      V
Sbjct: 1474 DRDLFEELSIQWNFPRDAVKQLCYGLIYGMGAKSLSELTRMSIEDAEKMLKAFFAMFPGV 1533

Query: 518  SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                NE  +      E   + I  +R  +                               
Sbjct: 1534 RSYINETKEKV--CKEEPISTIIGRRTII-----------------------------KA 1562

Query: 578  SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633
            S +     ++ R            +Q  + +I    +++        G  IVLT+HDE++
Sbjct: 1563 SGIGEERARIERVA------VNYTIQGSASEIFKTAIVDIESKIKEFGAQIVLTIHDEVL 1616

Query: 634  CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
             E P+     AS  + + M +  S    +P++      + +
Sbjct: 1617 VECPEIHVAAASESIENCMQNALSHLLRVPMRVSMKTGRSW 1657


>gi|116517384|gb|ABJ99064.1| Hypothetical protein W03A3.2 [Caenorhabditis elegans]
          Length = 1540

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 94/332 (28%), Gaps = 53/332 (15%)

Query: 179  SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
               E E       I   G   D AL ++    +  +   L++ +  L      +     +
Sbjct: 1150 LQLEMESCQTVLNIFYSGIVFDQALCNSFIYKIRKQIENLEENIWRL-AYGKFNIHSSNE 1208

Query: 239  LKTWLFLETGL--HLEDLTET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +   LF   GL        +       T + +L       P   ++   R          
Sbjct: 1209 VANVLFYRLGLIYPETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQ----IQHTL 1264

Query: 291  LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
               L+      GR+    +    + TGR    V   QN+P+   S               
Sbjct: 1265 TQCLMPLAKFIGRIHCWFEMC--TSTGRILTSVPNLQNVPKRISSD-------------- 1308

Query: 351  TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                          R   IA+    L+ AD   +E RVLA ++ +   +    +  DL+ 
Sbjct: 1309 ----------GMSARQLFIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFE 1358

Query: 411  TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
                +             R   K +   L Y  GAK+  ++       ++         +
Sbjct: 1359 ELSIQWN---------FPRDAVKQLCYGLIYGMGAKSLSELTR-----MSIEDAEKMLKA 1404

Query: 471  APEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                +    ++    +E   +       IG  
Sbjct: 1405 FFAMFPGVRSYINETKEKVCKEEPISTIIGRR 1436



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 65/221 (29%), Gaps = 42/221 (19%)

Query: 458  NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            + + F  L    + P +      +           +          E++ KA+      V
Sbjct: 1353 DRDLFEELSIQWNFPRDAVKQLCYGLIYGMGAKSLSELTRMSIEDAEKMLKAFFAMFPGV 1412

Query: 518  SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                NE  +      E   + I  +R  +                               
Sbjct: 1413 RSYINETKEKV--CKEEPISTIIGRRTII-----------------------------KA 1441

Query: 578  SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633
            S +     ++ R            +Q  + +I    +++        G  IVLT+HDE++
Sbjct: 1442 SGIGEERARIERVA------VNYTIQGSASEIFKTAIVDIESKIKEFGAQIVLTIHDEVL 1495

Query: 634  CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
             E P+     AS  + + M +  S    +P++      + +
Sbjct: 1496 VECPEIHVAAASESIENCMQNALSHLLRVPMRVSMKTGRSW 1536


>gi|322815448|gb|EFZ24101.1| DNA polymerase theta (polymerase domain only), putative
           [Trypanosoma cruzi]
          Length = 881

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/374 (13%), Positives = 95/374 (25%), Gaps = 97/374 (25%)

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           +        A+ +  +       Q + +           I+    S +            
Sbjct: 573 VHPKWSVHHATTSRLFCSR-PCLQTVAKNPP--------ISRTAPSSSPPVTIFSNPKWT 623

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PA 422
           +R       G  LV  D   IE RV+A ++G+   ++    G D+      R   +    
Sbjct: 624 LRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRDGSDVLAEMALRVMQLPRLT 683

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            VT   R   KV+   L Y  G ++           +  FA     +             
Sbjct: 684 DVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKEITPFAEQPPLS------------- 730

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                 +  +++ Q +  V            +     +      
Sbjct: 731 --------------------ARQFLRSFNQCYPAVQGFLKSTR---LRAFHEKRCATLNG 767

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
            RD+                P G                                    +
Sbjct: 768 LRDLSGE-------------PDGNRRKQV-------------------------AVALAI 789

Query: 603 QAVSRDILAEGMMNATKAGYD-----------IVLTVHDEIVCETPDTDEFNAS-MLYHL 650
           Q  +  IL   M+   +  ++           +VL+VHDE+V   PD      +  +  +
Sbjct: 790 QGGAAVILHHAMVEVHEKRHELVPFLPAAAAALVLSVHDELVYAVPDGAVSFVAPKIKQI 849

Query: 651 MT-SNPSWAKGLPL 663
           +     + +  +PL
Sbjct: 850 LEQQAAALSLSVPL 863


>gi|169835973|ref|ZP_02869161.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a]
          Length = 180

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 53/208 (25%), Gaps = 42/208 (20%)

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                   NF      +    +          ++    +      + E    + +  E+ 
Sbjct: 8   QRRNAKVINFGVLYGMSPHGLSAATGMSFIEAKKFIDDYFNLRRPIREF---IEETLEKA 64

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
              G                             GR     DV ++   +    ++     
Sbjct: 65  KNEGYVTTY-----------------------FGRRRPTPDVKSSNFMVREAAKRA---- 97

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDI---VLTVHDEIVCETPDTDEFNASMLY 648
                     +Q    D++   M+   +   ++   +L +HD I+ E P  +      + 
Sbjct: 98  -----AANMPIQGTEADLMKRAMLRTEEKLGNLGEQILQIHDSILVECPKKNADKVVEIL 152

Query: 649 H-LMTS-NPSWAKGLPLKAEGYESKRYR 674
              M S  P     + LK +    + + 
Sbjct: 153 RFEMESVAPE--LDIKLKVDIKTGEHWG 178



 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 14/114 (12%)

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
            AQVT +QR   KV+   + Y                 ++        +           
Sbjct: 1   MAQVTSNQRRNAKVINFGVLYGMSPHGLSA-----ATGMSFIEAKKFIDDYFNLRRPIRE 55

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
           F     E          + G          R+    V      + +A ++   N
Sbjct: 56  FIEETLEKAKNEGYVTTYFGR---------RRPTPDVKSSNFMVREAAKRAAAN 100


>gi|150404387|gb|ABR68507.1| DNA polymerase I [Lactobacillus casei]
 gi|150404391|gb|ABR68509.1| DNA polymerase I [Lactobacillus casei ATCC 334]
 gi|150404419|gb|ABR68523.1| DNA polymerase I [Lactobacillus casei]
 gi|150404429|gb|ABR68528.1| DNA polymerase I [Lactobacillus casei]
 gi|225349752|gb|ACN87801.1| PolA [Lactobacillus casei]
 gi|225349762|gb|ACN87806.1| PolA [Lactobacillus casei]
 gi|225349764|gb|ACN87807.1| PolA [Lactobacillus casei]
 gi|225349768|gb|ACN87809.1| PolA [Lactobacillus casei]
 gi|225349770|gb|ACN87810.1| PolA [Lactobacillus casei]
 gi|225349772|gb|ACN87811.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 76/254 (29%), Gaps = 41/254 (16%)

Query: 57  LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108
           +K  LE+         +  + TV              + +P       L+ +        
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--- 165
              +G+       +  +  +L               R  P   + +  F    K D    
Sbjct: 60  SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFAR--KSDALFA 109

Query: 166 ---TVT--REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
               +T   E  ++ +  +  E  L  +   +  +G  ++      +          L++
Sbjct: 110 LRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           ++ +       +    ++L   LF +  L +   T+   +T   VL+  K  +P    + 
Sbjct: 170 KIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 278 NNRMRASRSAVLKL 291
           + R   ++     +
Sbjct: 229 DYR-GWAKLNSTYV 241


>gi|225349766|gb|ACN87808.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 76/254 (29%), Gaps = 41/254 (16%)

Query: 57  LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108
           +K  LE+         +  + TV              + +P       L+ +        
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--- 165
              +G+       +  +  +L               R  P   + +  F    K D    
Sbjct: 60  SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFAR--KSDALFA 109

Query: 166 ---TVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
               +T ++ K+ +     + E     +   +  +G  ++      +          L++
Sbjct: 110 LRPDLTGDLEKQEQTDLFTDMEPTLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           ++ +       +    ++L   LF +  L +   T+   +T   VL+  K  +P    + 
Sbjct: 170 KIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 278 NNRMRASRSAVLKL 291
           + R   ++     +
Sbjct: 229 DYR-GWAKLNSTYV 241


>gi|150404361|gb|ABR68494.1| DNA polymerase I [Lactobacillus casei]
 gi|150404383|gb|ABR68505.1| DNA polymerase I [Lactobacillus casei]
 gi|150404403|gb|ABR68515.1| DNA polymerase I [Lactobacillus casei]
 gi|150404405|gb|ABR68516.1| DNA polymerase I [Lactobacillus casei]
 gi|150404411|gb|ABR68519.1| DNA polymerase I [Lactobacillus casei]
 gi|150404421|gb|ABR68524.1| DNA polymerase I [Lactobacillus casei]
 gi|150404425|gb|ABR68526.1| DNA polymerase I [Lactobacillus casei]
 gi|150404427|gb|ABR68527.1| DNA polymerase I [Lactobacillus casei]
 gi|150404431|gb|ABR68529.1| DNA polymerase I [Lactobacillus casei]
 gi|225349756|gb|ACN87803.1| PolA [Lactobacillus casei]
 gi|225349758|gb|ACN87804.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 76/254 (29%), Gaps = 41/254 (16%)

Query: 57  LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108
           +K  LE+         +  + TV              + +P       L+ +        
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--- 165
              +G+       +  +  +L               R  P   + +  F    K D    
Sbjct: 60  SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFAR--KSDALFA 109

Query: 166 ---TVT--REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
               +T   E  ++ +  +  E  L  +   +  +G  ++      +          L++
Sbjct: 110 LRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVF 277
           ++ +       +    ++L   LF +  L +   T+   +T   VL+  K  +P    + 
Sbjct: 170 KIYAEAGLK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228

Query: 278 NNRMRASRSAVLKL 291
           + R   ++     +
Sbjct: 229 DYR-GWAKLNSTYV 241


>gi|150404373|gb|ABR68500.1| DNA polymerase I [Lactobacillus casei]
 gi|150404375|gb|ABR68501.1| DNA polymerase I [Lactobacillus casei]
 gi|150404377|gb|ABR68502.1| DNA polymerase I [Lactobacillus casei]
 gi|150404381|gb|ABR68504.1| DNA polymerase I [Lactobacillus casei]
 gi|150404417|gb|ABR68522.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 75/252 (29%), Gaps = 37/252 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108
           +K  LE+         +  + TV              + +P       L+ +        
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGD 164
              +G+       +  +  +L               R  P   + +  F           
Sbjct: 60  SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFARKSNALFALR 111

Query: 165 VTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             +T ++ K+ +     + E+    +   +  +G  ++      +          L++++
Sbjct: 112 PDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKI 171

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
            +       +    ++L   LF +  L +   T+   +T   VL+  K  +P    + + 
Sbjct: 172 YAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDY 230

Query: 280 RMRASRSAVLKL 291
           R   ++     +
Sbjct: 231 R-GWAKLNSTYV 241


>gi|158345163|ref|YP_001522870.1| putative DNA polymerase [Enterobacteria phage LKA1]
 gi|114796459|emb|CAK24997.1| putative DNA polymerase [Pseudomonas phage LKA1]
          Length = 791

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 56/443 (12%), Positives = 116/443 (26%), Gaps = 105/443 (23%)

Query: 252 EDLTE--TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLV 295
           +D T   +T   VL    K   +A    +      +                      ++
Sbjct: 386 DDKTPVYSTSSEVLEVLAKHGFEAADKLSRMASLEKDNGTYYRSVEYDKEGNVKKVKGML 445

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           + +  DG +  +L    A+ TGR S      QNLPR                        
Sbjct: 446 QYVQPDGIIHHSLNLC-ATATGRLSSSYPNLQNLPRDG---------------------- 482

Query: 356 PLQIISDCVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
                +  V+    +  G   +++  D + +E  +LA ++G++  L+    G D++    
Sbjct: 483 -----TSRVKEMFESRFGTAGRIIEVDYSALEVVMLAALSGDENLLEQLVKGTDMHCLRL 537

Query: 414 ARSFNVAPAQ---------------VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
           A        +                 K  R   K    A  Y   A+            
Sbjct: 538 AAKLGEPYEEVLHKAVENQAHPEHKRYKQMRTDIKPPSFAAQYGASAE-----GIAYATG 592

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
           ++         +    +  +  F   ++            +    +    AWR       
Sbjct: 593 VSVEYAKEFLETEARLFPQSIAFRGVVRAEVERTGELPEGLHREQDEATGAWRIYRRGYW 652

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLV---YMKKDKNNLILMLPSGRSLVYRDVGN 575
           +       +F Q  +  K +  R           Y  + +   ++ + +GR L +  + +
Sbjct: 653 QAPGGARYSFRQWPQWNKELRQRVMDYKDTQIANYWCQGEAFYLMAVSAGRVLRW--LLS 710

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                N    Q    +                                    VHD +  +
Sbjct: 711 VNFLANEEFPQGRVCFINN---------------------------------VHDALYFD 737

Query: 636 TPDTDEFNAS-MLYHLMTSNPSW 657
             ++        +  +M   P +
Sbjct: 738 VHESVVREVGLQVKAIMEDAPKY 760



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 39/203 (19%)

Query: 67  TIVAHNSYFERTVLKACFNLDI-----PIHRWICTLVLARSN----GLPSALKAVGEALK 117
            +VAHN+ +E +     +  +         R +CT +             +L        
Sbjct: 70  LLVAHNAGYEVSWFLTRYRDEFEKFLKRGGRVLCTQMAEYILSNFTDTYPSLDETAPKYG 129

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK---GDVTVTREIFKR 174
             + K++  KEL             + +     +   +L  EY     GDV  TR  F  
Sbjct: 130 -GTHKIDAVKEL-------------WKQGHLTSQIDPKLLAEYLAGPEGDVENTRRTFYG 175

Query: 175 LEPLSSKEQELWYLD---------QTINDRGYCVDVAL----AHTLNQIVDVERTKLDQE 221
              L  +  +                    G  V+  +           +   R ++ + 
Sbjct: 176 QMALLQERGQWGLFLERCEALLAFAYCEFFGLYVNTEVAEANLAKQEAELAELRAEVQKL 235

Query: 222 LESLTYGLVSSSRCLEKLKTWLF 244
           L  L      +      L   LF
Sbjct: 236 LPELPEHFEFNWGSDYHLSALLF 258


>gi|150404365|gb|ABR68496.1| DNA polymerase I [Lactobacillus casei]
 gi|150404409|gb|ABR68518.1| DNA polymerase I [Lactobacillus casei]
 gi|150404423|gb|ABR68525.1| DNA polymerase I [Lactobacillus casei]
 gi|150404433|gb|ABR68530.1| DNA polymerase I [Lactobacillus casei]
 gi|150404437|gb|ABR68532.1| DNA polymerase I [Lactobacillus casei]
 gi|225349774|gb|ACN87812.1| PolA [Lactobacillus casei]
          Length = 243

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 75/252 (29%), Gaps = 37/252 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108
           +K  LE+         +  + TV              + +P       L+ +        
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGD 164
              +G+       +  +  +L               R  P   + +  F           
Sbjct: 60  SNDLGKI-----AEDHDYHDLPRDEDIYGKGA---KRQVPEDDKLFGQFARKSNALFALR 111

Query: 165 VTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             +T ++ K+ +     + E+    +   +  +G  ++      +          L++++
Sbjct: 112 PDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKI 171

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
            +       +    ++L   LF +  L +   T+   +T   VL+  K  +P    + + 
Sbjct: 172 YAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDY 230

Query: 280 RMRASRSAVLKL 291
           R   ++     +
Sbjct: 231 R-GWAKLNSTYV 241


>gi|189427035|ref|YP_001950134.1| DNA polymerase I [Ralstonia phage RSL1]
 gi|189233347|dbj|BAG41704.1| DNA polymerase I [Ralstonia phage RSL1]
          Length = 1050

 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 82/757 (10%), Positives = 171/757 (22%), Gaps = 195/757 (25%)

Query: 1   MA------TLFIDFETRSPIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVH 49
           M          +D ET    +L+      Y             +    D HP+  W    
Sbjct: 235 MKRFDTAEYCALDTET---KNLSSLHNRIYTMQFTTNHNPNAGYVLAID-HPLTHWSKEE 290

Query: 50  DPVMPQVLKEALENTD----VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
              + + L++          +T   H   F+  V++    + I        +    S   
Sbjct: 291 RQYIKRELRQRFAAKTGPLLITFNGH--MFDLRVIRQILRIPIMWLPVWEIMFAEHSLDE 348

Query: 106 PSAL-KAVGEALKLSSQKMEEG------------KELIARFCKGETHECLYDR------- 145
            ++L  A   A+    +K   G                A F K +       +       
Sbjct: 349 NASLLNAASNAVNPDGKKATYGGLAPIFTSYGNDHYYTAAFSKAQRSTSGQVKPDNPDFL 408

Query: 146 -------------------NKPNHREAWRLFGEY-----CKGDVTVTREIFKRLEPLSSK 181
                                       + F  Y      +        +       SS 
Sbjct: 409 EYASTDTVSIAHIRQMQIKRASYMEIDGQSFAPYFVRHMEQQMSDTAHALSHMRNDGSSL 468

Query: 182 EQELWYLDQ-----TINDRGYCVDVALAHTLNQIVDVERTKLDQ-ELESLTY----GLVS 231
            +                    +D        +  + E       + +SL        + 
Sbjct: 469 SRPALKHLMGPKSPLREMMAKTLDQLRLMNEVRKANKELLSDSGFKAKSLFGGVSDKWIF 528

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETT-----CQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                +      F   GL    +++ T      +  +   K        ++      ++ 
Sbjct: 529 QPTKPDHKAKLFFDVLGLEPLSMSKITGKPQIDKEFIKHYKDKNKVVA-LYGEYQALTKV 587

Query: 287 AVLKLNTLVEAMNS------DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
               +      +N+      D  LR     +    TGR        Q +P          
Sbjct: 588 ISTYVKAWSRRLNTALDESTDDSLRADYFLV---DTGRLGSKDPNLQQIPSRGP------ 638

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                              +S  +++  +A  G  LV  D +  E R+ +  +G++    
Sbjct: 639 -------------------LSKLLKTLFVARPGYLLVRFDYSAHEVRIWSVASGDKVIAA 679

Query: 401 AFETGEDLYVTTYARSFNVAPA---------------------QVTKDQRAIGKVMELAL 439
           AF TG +L         +                               R   K +   +
Sbjct: 680 AFRTGLELRQAFIQDPSDANKKALKEKGDFHILNVQRFFKKLVDKDHPLRDAVKKVVFGV 739

Query: 440 GYQGGAKAFQKMASTTGLNLNTFA-HLVKTNSAPEEWEDAENFCRWMQEN--HPEHAIED 496
            Y  GA+   +      ++        +   S   +          M E       A+ +
Sbjct: 740 IYGKGAETLGEDTKEGDISSLRAEVAKLYDESLTCKDAKRLARINEMLEELDDKLTALFN 799

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                  + +      +          + +  E+                          
Sbjct: 800 EDRSEYAQGIVDKMFGEFKAGHRWIQRMSKMAEE-------------------------- 833

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEG--- 613
              +   +GR           +       +  R  T         +Q V+ +I  +    
Sbjct: 834 KFYVYSFNGRVRHLY---AAMTGDKRIISKQVRRGTNAP------IQGVASEIGNKADRL 884

Query: 614 --------------MMNATKAGY--DIVLT--VHDEI 632
                         M+   ++ +   +     VHD +
Sbjct: 885 IITEYYKRLPKLKKMLGIDRSDWELRVFSQRAVHDAL 921


>gi|150404367|gb|ABR68497.1| DNA polymerase I [Lactobacillus casei]
 gi|150404369|gb|ABR68498.1| DNA polymerase I [Lactobacillus casei]
 gi|150404385|gb|ABR68506.1| DNA polymerase I [Lactobacillus casei]
 gi|150404393|gb|ABR68510.1| DNA polymerase I [Lactobacillus casei]
 gi|150404395|gb|ABR68511.1| DNA polymerase I [Lactobacillus casei]
 gi|150404435|gb|ABR68531.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 77/252 (30%), Gaps = 37/252 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108
           +K  LE+         +  + TV              + +P       L+ +        
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC----KGD 164
              +G        K+ E  +        + ++    R  P   + +  F           
Sbjct: 60  SNDLG--------KIAEDHDYHDLPRDEDIYDKGAKRQVPEDDKLFGQFARKSNALFALR 111

Query: 165 VTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
             +T ++ K+ +     + E+    +   +  +G  ++      +          L++++
Sbjct: 112 PDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKI 171

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNN 279
            +       +    ++L   LF +  L +   T+   +T   VL+  K  +P    + + 
Sbjct: 172 YAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDY 230

Query: 280 RMRASRSAVLKL 291
           R   ++     +
Sbjct: 231 R-GWAKLNSTYV 241


>gi|150404363|gb|ABR68495.1| DNA polymerase I [Lactobacillus casei]
 gi|150404397|gb|ABR68512.1| DNA polymerase I [Lactobacillus casei]
 gi|150404399|gb|ABR68513.1| DNA polymerase I [Lactobacillus casei]
 gi|150404401|gb|ABR68514.1| DNA polymerase I [Lactobacillus casei]
 gi|150404407|gb|ABR68517.1| DNA polymerase I [Lactobacillus casei]
 gi|150404413|gb|ABR68520.1| DNA polymerase I [Lactobacillus casei]
 gi|150404415|gb|ABR68521.1| DNA polymerase I [Lactobacillus casei]
 gi|150404439|gb|ABR68533.1| DNA polymerase I [Lactobacillus casei]
          Length = 243

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 73/256 (28%), Gaps = 45/256 (17%)

Query: 57  LKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSNGLPSA 108
           +K  LE+         +  + TV              + +P       L+ +        
Sbjct: 10  VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIA-FDVLLASYLINPDEN 59

Query: 109 LKAVGE------ALKLSSQKMEEGKELIARFCKGETHECLYDRN----KPNHREAWRLFG 158
              +G+         +   +   GK    +  + +     + R          +      
Sbjct: 60  SNDLGKIAEDHDYHDMPRDEDIYGKGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLE 119

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +  + D+             +  E  L  +   +  +G  ++      +          L
Sbjct: 120 KQAQTDL------------FTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKIL 167

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQ 275
           ++++ +       +    ++L   LF +  L +   T+   +T   VL+  K  +P    
Sbjct: 168 EEKIYAEAGVK-FNLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQD 226

Query: 276 VFNNRMRASRSAVLKL 291
           + + R   ++     +
Sbjct: 227 ILDYR-GWAKLNSTYV 241


>gi|168705115|ref|ZP_02737392.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246]
          Length = 125

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 15/125 (12%)

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               L    GR   +   G + +          RE           +Q  + D++ + M+
Sbjct: 1   ERGRLQTILGRWRAFNLDGRDVNSTYQGRTMAAREAI------NYEIQGSAADLIKKAML 54

Query: 616 NAT------KAGYDIVLTVHDEIVCETPDTDEFNASMLY-HLMTSNPSWAKGLPLKAEGY 668
            A       +    ++LTVHDE+V E P  +    + L    MTS       +PLK +  
Sbjct: 55  GAHARMAAQRLHARMLLTVHDELVFEAPPAEVEPLARLVREEMTSAIK--LDVPLKVDVA 112

Query: 669 ESKRY 673
               +
Sbjct: 113 AGPNW 117


>gi|157870107|ref|XP_001683604.1| DNA polymerase theta (polymerase domain only) [Leishmania major
            strain Friedlin]
 gi|68126670|emb|CAJ04554.1| putative DNA polymerase theta [Leishmania major strain Friedlin]
          Length = 1170

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 114/453 (25%), Gaps = 130/453 (28%)

Query: 278  NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA---------------SRTGRWSGC 322
              R  A +  V  L    +A   DG          A               + TGR    
Sbjct: 760  MFRKVADKLHVCVLEKPRDAAAEDGTAVPDAWTAQASQVCYSMHPDWVLHNTSTGRIFSA 819

Query: 323  VFPPQNLPR----------------------------------PSRSHEE----LDQIIT 344
            +   QNLP+                                  P+    E    L +   
Sbjct: 820  LPNVQNLPKQPPRTMFPIHALSATPSRNSGGDESLRPYSHIDPPTEEDVERWLSLAEAAA 879

Query: 345  HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                S    P   +     +R    A  G  L   D   +E R+LA ++G+    +    
Sbjct: 880  VDQASPAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSA 939

Query: 405  GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D+     A    +    +V   QR   KV+   L Y  G ++                
Sbjct: 940  NVDVLALVTASVLRLPSIDRVRPQQRQAVKVVVYGLLYGMGLESMDV------------- 986

Query: 464  HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                        +  E F    Q+ H   A            + + + + + R+     E
Sbjct: 987  ---------RIKKINEEFAASEQQQHRGEASSSAPAPMPARDLLRRFHRVYPRIESYLRE 1037

Query: 524  LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
              Q   +                          +  +   SGR  +  +   NR      
Sbjct: 1038 TRQEALR--------------------------SFAVETLSGRKSLIAEKDANRRKQRAI 1071

Query: 584  TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----------AGYDIVLTVHDEI 632
             +                VQ  + D+L   M    +           A   +V+++HDE+
Sbjct: 1072 AQA---------------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVMSIHDEL 1116

Query: 633  VCETPDTDEFNASM-LYHLMT-SNPSWAKGLPL 663
            V   P          +  ++          +PL
Sbjct: 1117 VYAVPRVAIDEVVRGVQRILEDQARVLRLAVPL 1149


>gi|294948800|ref|XP_002785901.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
 gi|239900009|gb|EER17697.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983]
          Length = 1712

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 84/336 (25%), Gaps = 78/336 (23%)

Query: 319  WSGCVFPPQ-NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV 377
             +         L    +     DQ+         +     +     +R   +A +G+ L+
Sbjct: 1406 LASRAPQCTIQLSTGQKLVYPADQVFRQSAAVAVTADADARKRVIALRDAFVAPKGRLLL 1465

Query: 378  VADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMEL 437
              D   +EAR+LA   G+Q  +  F   +  Y +T + ++++     +            
Sbjct: 1466 SVDYCQLEARLLAHFCGDQRLITLFNQPDGDYNSTGSPTYDIFVHIASTWLS-------- 1517

Query: 438  ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
                                       L + +           +           + E  
Sbjct: 1518 -------------------------KALNEVSDMERNGIKQLVYGVIYGMGARSLSREMG 1552

Query: 498  FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
                  E +   +  +  RV E    +                              +  
Sbjct: 1553 VTLAEGEALMSKFDNEFPRVREWTRSVIHGA-------------------------TREG 1587

Query: 558  LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
              +    GR      +G   +       +  R+            QA + DI+    +  
Sbjct: 1588 ASVPSILGRPRHLAGLGGGGTA--QERARAQRQA------VNTACQASAADIMKAATLEV 1639

Query: 618  TKA-----------GYDIVLTVHDEIVCETPDTDEF 642
             +              +I+L +HDE++ E  +    
Sbjct: 1640 ARRLAAMRDENGRPPAEILLQIHDELLLEVDEDRIE 1675



 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 48/227 (21%), Gaps = 35/227 (15%)

Query: 129  LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL---------- 178
            L+A     E                      Y   D+     I+     L          
Sbjct: 1074 LMAWLRNPEDSTGPSL----EKYVKQLSAPHYLDRDLKQCLAIYALCTELGRGLVQHSGL 1129

Query: 179  ----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                 + E     L   +   G  V  +            + +  +       G   +  
Sbjct: 1130 LELLVTVEAPTAALLVDMEVTGLMVTPSYWFHRQGKHARYKMQALEVAVREAVGRYVALG 1189

Query: 235  CLEKLKTWLFLETGLHLE-----DLTET-------TCQRVLSSNKKL---TPQAIQVFNN 279
              E +   +F +  + +         +          Q+ L               +  +
Sbjct: 1190 NAEDVSKAIFDDLNVPVPEGLRPRKVKKNGHKVYAVDQKTLMQLDPPDRCHDLFDWIMEH 1249

Query: 280  RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
            R  +   +  K   +   +  DG    T      + TGR        
Sbjct: 1250 RRLSHVLS--KHAVIDRHVLHDGLRVHTTFTQTGTATGRLKSTDPNL 1294


>gi|322492142|emb|CBZ27416.1| DNA polymerase theta (polymerase domain only),putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1171

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/411 (13%), Positives = 94/411 (22%), Gaps = 113/411 (27%)

Query: 305  RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH---------------------------- 336
                  L  + TGR    +   QN+P+                                 
Sbjct: 801  MHPDWVLHNTSTGRIFSSLPNVQNVPKQPPRTAFPIHTLSATPSRNSGGDESLRHYSYVD 860

Query: 337  ----------EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
                        L +       S    P   +     +R    A  G  L   D   +E 
Sbjct: 861  PPTEEDVARWLALAEAALVDQASSAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLEL 920

Query: 387  RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGA 445
            R+LA ++G+    +      D+     A    +     V   QR   KV+   L Y  G 
Sbjct: 921  RLLAHLSGDAALQEHLSANVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGP 980

Query: 446  KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            ++             T                                            
Sbjct: 981  ESMDVRIKKINEEFATSEQQQHHRGGEASSPGPAPMS--------------------AHD 1020

Query: 506  VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
            + + +   + R+     E  Q   +                          +  +   SG
Sbjct: 1021 LLRRFHHVYPRIESYLRETRQEALR--------------------------SFAVETLSG 1054

Query: 566  RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK------ 619
            R  +  +   NR       +                VQ  + D+L   M    +      
Sbjct: 1055 RKSLIAEKDANRRRQRAIAQA---------------VQGGAADVLHSAMRAVHQQRHSFL 1099

Query: 620  -----AGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMT-SNPSWAKGLPL 663
                 A   +V++VHDE+V   P          +  ++          +PL
Sbjct: 1100 PYLPAATLALVMSVHDELVYAVPRAAIEEVVRGVQRVLEDQARVLRLAVPL 1150


>gi|213022529|ref|ZP_03336976.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 478

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 23/135 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 353 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 402

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           ++LK  LE+  V  V  N  ++R VL+    +++       T++ +              
Sbjct: 403 ELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIA-FDTMLESYILNSVAGRHDMDS 460

Query: 114 EALKLSSQKMEEGKE 128
            + +    K    ++
Sbjct: 461 LSDRWLKHKTITFED 475


>gi|269976594|ref|ZP_06183579.1| DNA polymerase [Mobiluncus mulieris 28-1]
 gi|269935395|gb|EEZ91944.1| DNA polymerase [Mobiluncus mulieris 28-1]
          Length = 143

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           +V A + GLP +LK VG+ L L +QKM+EGK+LI  FC  + +     R   +    W+L
Sbjct: 1   MVWAATLGLPLSLKDVGKVLNLDAQKMDEGKDLIKHFCVPDDNS--QRRLPSSDPAGWKL 58

Query: 157 FGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           F  Y   DV V   I ++L   P+     E + +DQ INDRG  +D  LA +   I +  
Sbjct: 59  FQSYNARDVQVETAIRQKLANFPVPEYVWEQYEVDQRINDRGIRIDTTLAASAITIDEKH 118

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKT 241
           R +       LT   + +     +L+ 
Sbjct: 119 RAQALARAHKLTG--LDNPASPLQLQE 143


>gi|332142368|ref|YP_004428106.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552390|gb|AEA99108.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 289

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 92/286 (32%), Gaps = 36/286 (12%)

Query: 1   MATLFIDFETR--SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           M  + +D+ET   S  ++ K G   Y  D    ++  +   +      +      V+ + 
Sbjct: 1   MIDVTLDWETYFDSQYNIKKLGTMAYVRDPRFQILGASMKVEHEDTRWYTPNEIDVLVEE 60

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGE 114
           LK    +  V ++  N+ F+  +L      +     +  T+ +A+         L ++ +
Sbjct: 61  LKSLEASNGVRLIGQNTKFDGLILA--EKHNFIPSYYCDTMAMAKGLWPHHKSDLDSLTK 118

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L  + +   +G EL +   K                   ++  +Y   D  +T E FK+
Sbjct: 119 RLFPNDKSKHKGTELESFKGKTYEDI--------EADGTEQILIQYGVQDSDITYESFKQ 170

Query: 175 LEPLSSKEQELWYLDQTINDRGYCV---DVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           +E     + E+  +D T+      V   D +L   +      E+  + Q           
Sbjct: 171 MEQW-YPKPEMDIIDMTVRMFCDPVFVLDTSLMDRVAVEATKEKESVIQTAIDFVNSDEI 229

Query: 232 SSR----------------CLEKLKTWLFLETGLHLEDLTETTCQR 261
            +R                   K    L    G+ +      T  +
Sbjct: 230 KARRLMINGELQAISPKTFSSNKEFPLLLESLGMDIPMKKSPTTGK 275


>gi|146087835|ref|XP_001465919.1| DNA polymerase theta (polymerase domain only) [Leishmania infantum
            JPCM5]
 gi|134070020|emb|CAM68350.1| putative DNA polymerase theta (polymerase domain only) [Leishmania
            infantum JPCM5]
          Length = 1169

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 66/453 (14%), Positives = 116/453 (25%), Gaps = 130/453 (28%)

Query: 278  NNRMRASRSAVLKLNTLVEAMNSDG------------RLRGTLQFLGA---SRTGRWSGC 322
              R  A +  V  L    ++   DG            R+  ++          TGR    
Sbjct: 759  MFRKVADKLHVCVLEKPRDSAAEDGPAVSDASTAQVSRVCYSMHPNWVLHNKSTGRIFSA 818

Query: 323  VFPPQNLPR----------------------------------PSRSHEE----LDQIIT 344
            +   QNLP+                                  P+    +    L +   
Sbjct: 819  LPNVQNLPKQPPRTTFPIHALSATPSRNSGGDESLRPYGYVDPPTEEDVDRWLSLAEAAA 878

Query: 345  HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                S    P   +     +R    A  G  L   D   +E R+LA ++G+    +    
Sbjct: 879  VDQASSAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSA 938

Query: 405  GEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
              D+     A    +     V   QR   KV+   L Y  G ++                
Sbjct: 939  NVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDV------------- 985

Query: 464  HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                        +  E F    Q+ H   A        A   + + + + + R+     E
Sbjct: 986  ---------RIKKINEEFATSEQQQHRGEAASSAPAPMAARDLLRRFHRVYPRIENYLRE 1036

Query: 524  LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
              Q   +                          +  +   SGR  +  +   NR      
Sbjct: 1037 TRQEALR--------------------------SFAVETLSGRKSLIAEKDANRRRQRAI 1070

Query: 584  TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----------AGYDIVLTVHDEI 632
             +                VQ  + D+L   M    +           A   +V+++HDE+
Sbjct: 1071 AQA---------------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVMSIHDEL 1115

Query: 633  VCETPDTDEFNASM-LYHLMT-SNPSWAKGLPL 663
            V   P          +  ++          +PL
Sbjct: 1116 VYAVPRVAIEEVVRGVQRILEDQARVLRLAVPL 1148


>gi|32442279|gb|AAP82210.1| DNA polymerase [Podovirus SOG]
          Length = 406

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/438 (12%), Positives = 105/438 (23%), Gaps = 105/438 (23%)

Query: 95  CTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            TL+L+R          +L A+                                 +  + 
Sbjct: 1   DTLILSRLADPTRKGGHSLNALS---------------------------GNEKIDFHDF 33

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLS--------SKEQELWYLDQTINDRGYCVDVA 202
                    YCK DV +  +++ +L+             E ++  +       G+ +D  
Sbjct: 34  STYTPEMLTYCKQDVAINEKVYLQLKDELSNFGKASIQLEHQMQAIVCEQEKNGFMLDTD 93

Query: 203 LAHTLNQIVDVERTKLDQELESLT------------------------------------ 226
           +A  +      E  +++ E++                                       
Sbjct: 94  IAEEIYTTCLRETNRIEAEIKEFMVPIAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYT 153

Query: 227 --YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFNN 279
                  +     ++   L           T++          L++     P+A++    
Sbjct: 154 KIAWEEFNLGSPVQVNKRL-DRLDWKPTVKTKSGNSYKICPENLATIPDTAPEAVKGLKA 212

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                 +        ++     GR+ G +   GA  T R +       N+P      + +
Sbjct: 213 WKVLE-TRWKLAQEWLQKSQETGRVHGRVILTGA-VTHRAAHQGPNMANIPSVPHGKDGI 270

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
              +               +     R      EGK LV  D AGI+ RVLA    +    
Sbjct: 271 LWKME-------------GMYGAECRQAFKVPEGKLLVGTDAAGIQLRVLAHYMNDP--- 314

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                  +  +     +FN          R   K    A     G      +        
Sbjct: 315 ----IYTEQVIDGDIHTFNKEALGRFCKDRPTAKTFIYAFLLGAGTGMIASILGCNNRQA 370

Query: 460 NTFAHLVKTNSAPEEWED 477
           N             +   
Sbjct: 371 NEAMSNFYEAIPALKKLK 388


>gi|322499407|emb|CBZ34480.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1171

 Score =  104 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/401 (14%), Positives = 103/401 (25%), Gaps = 115/401 (28%)

Query: 315  RTGRWSGCVFPPQNLPR----------------------------------PSRSHEE-- 338
             TGR    +   QNLP+                                  P+    +  
Sbjct: 813  STGRIFSALPNVQNLPKQPPRTTFPIHALSATPSRNSGGDESLRPYGYVDPPTEEDVDRW 872

Query: 339  --LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
              L +       S    P   +     +R    A  G  L   D   +E R+LA ++G+ 
Sbjct: 873  LSLAEAAAVDQASSVQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDA 932

Query: 397  WKLKAFETGEDLYVTTYARSFNVA-PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
               +      D+     A    +     V   QR   KV+   L Y  G ++        
Sbjct: 933  ALQEHLSANVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDV----- 987

Query: 456  GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                +  E F    Q+ H   A        A   + + + + + 
Sbjct: 988  -----------------RIKKINEEFATSEQQQHRGEAASSAPAPMAARDLLRRFHRVYP 1030

Query: 516  RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            R+     E  Q   +                          +  +   SGR  +  +   
Sbjct: 1031 RIENYLRETRQEALR--------------------------SFAVETLSGRKSLIAEKDA 1064

Query: 576  NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-----------AGYDI 624
            NR       +                VQ  + D+L   M    +           A   +
Sbjct: 1065 NRRRQRAIAQA---------------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLAL 1109

Query: 625  VLTVHDEIVCETPDTDEFNASM-LYHLMT-SNPSWAKGLPL 663
            V+++HDE+V   P          +  ++          +PL
Sbjct: 1110 VMSIHDELVYAVPRVAIEEVVRGVQRILEDQARVLRLAVPL 1150


>gi|148724470|ref|YP_001285436.1| DNA polymerase [Cyanophage Syn5]
 gi|145588115|gb|ABP87934.1| DNA polymerase [Synechococcus phage Syn5]
          Length = 583

 Score =  104 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 80/560 (14%), Positives = 140/560 (25%), Gaps = 135/560 (24%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  L  D ET   +       C  A D          D +    ++        Q+LKEA
Sbjct: 1   MR-LVFDIETDGLLRGLSVIHCIVARD---------LDTNEEHRFEPHQTKAGLQLLKEA 50

Query: 61  LENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS----------------- 102
             +    +  HN   ++   +K  +       +   TL+L+R                  
Sbjct: 51  --DE---LWGHNIVGYDIEAIKELYPKWTTKAKLYDTLILSRLFFTDLLDRDFRSKPANM 105

Query: 103 ---NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   +L+A G  L +   K E GK+L   +                         E
Sbjct: 106 PGNLYGRHSLEAWGHRLGV--HKSEFGKQLDGDWSTYSP-----------------EMLE 146

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWY-------LDQTINDRGYCVDVALAHTLNQIVD 212
           YC  DVTV+ ++ +  EP   +  +          +       G+  DV  A  L   + 
Sbjct: 147 YCAQDVTVSVQVAQMFEPKLEQYADCIDTEHRLATIMAWQEREGFPFDVTAAQQLESRLR 206

Query: 213 VERTKLDQELES--------------------------LTYGLVSSSRCLEKLKTWLFLE 246
            E   L  ++ S                          +      +      +       
Sbjct: 207 TELDALSDQMRSTFLFVDGGTFTPRRNNKPQGYIADAPMCKLKEFNPTSRHHIAWAFQQF 266

Query: 247 TGLHLE----DLTETTCQRVLSSNK-KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
                +           +  L++          ++   +    + A  K N  ++  +  
Sbjct: 267 RNWEPKEFTDSGKPKIDEPTLTAIGTDEAKAFARILELQKHLGQLAEGK-NAWLKLESK- 324

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           GR+  +      + TGR +        +P  S                            
Sbjct: 325 GRVHHSCVLN--TNTGRQAHMRPNLAQVPSASEY-------------------------- 356

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R+     + +  V AD +G+E R LA          A         T      +   
Sbjct: 357 ---RALFGPGDSRVQVGADASGLELRCLAHYL-------APFDNGSFAETVVNGDIHTEL 406

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A +    R  GK +   L Y GG       A  +           +         D    
Sbjct: 407 ASIYGTDRKSGKGVTYCLIYGGGDHKLGSTAGAS--KAQASKKGKEIRGRIMRDLDGFAA 464

Query: 482 CRWMQENHPEHAIEDLFIGT 501
                       +     G 
Sbjct: 465 LSDAVSRRARTGVLRGLDGR 484



 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 9/89 (10%)

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGK---LTENIVQAVSRDILAEGMMN----ATKA- 620
              D  + R+          R     GK       ++Q+    I  + ++       +A 
Sbjct: 464 ALSDAVSRRARTGVLRGLDGRPIRLQGKSHAALNYLLQSAGAVICKQWLLRSYELLDEAN 523

Query: 621 -GYDIVLTVHDEIVCETPDTDEFNASMLY 648
             Y  +  VHDE+      +    A++L 
Sbjct: 524 IDYWPLAFVHDELQISVAPSQAEMATLLI 552


>gi|32442283|gb|AAP82212.1| DNA polymerase [Podovirus SOG]
          Length = 409

 Score =  104 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 116/453 (25%), Gaps = 113/453 (24%)

Query: 95  CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            TLVL+           +LK+ G  L     K  E  +                      
Sbjct: 1   DTLVLSSLFNPMRKGGHSLKSWGIRL--DEYK-GEFNDWSQYS----------------- 40

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL--------SSKEQELWYLDQTINDRGYCVDVA 202
                   +YCK DV VT  +++ L              E ++  +       G+ +D  
Sbjct: 41  ----EEMKQYCKQDVKVTELVYQELLKEGSKFSQASIDLEHQVHAIMCEQEANGFLLDTN 96

Query: 203 LAHTLNQIVDVERTKLDQELESLTY----------------------------------- 227
           LA  +      E T+++++++                                       
Sbjct: 97  LAQEIYTTCLAETTRIERDIKEFMVPIAVPVKEVNLKYKKDGSIFANQLLEGCNVQGDYT 156

Query: 228 ---GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-----RVLSSNKKLTPQAIQVFNN 279
                  +     ++   L    G      T+           L++     PQA++    
Sbjct: 157 KIMWEEFNLASQPQINKRLN-RLGWKPTVKTKGGDSYKICPENLATIPDTAPQAVKGLKK 215

Query: 280 RMRA---SRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                   + A   L         DGR+ G +   GA  T R +       N+P      
Sbjct: 216 WKVLETRWKLASEWLQG----SQVDGRVHGQVITPGA-VTHRAAHRGPNMANIPSVPHGK 270

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           + +   +               + +   R      EGK LV  D AGI+ RVLA    + 
Sbjct: 271 DGILWKMD-------------GMYAAECRQAFTVPEGKLLVGTDAAGIQLRVLAHYMNDP 317

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
                     +  +     +FN+         R   K    A     G     ++     
Sbjct: 318 -------VYTEQVIDGDIHTFNMNALGKFCKDRPTAKTFIYAFLLGAGVGKIAEI----- 365

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           L  N         +  E     +          
Sbjct: 366 LGCNAAQANKSMQNFYEALPTLKRLKSEAARAA 398


>gi|221066661|ref|ZP_03542766.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1]
 gi|220711684|gb|EED67052.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1]
          Length = 766

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/558 (12%), Positives = 126/558 (22%), Gaps = 156/558 (27%)

Query: 174 RLEPLSSKEQELWYLDQ--------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
             +P        W +           I+  G  VD+    ++         K    +   
Sbjct: 306 HADPHRVMMNRGWEVCATNLPTQLVQISCNGMPVDIDRLESIRCDAAAVVAKAASTVVEH 365

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV-----------LSSNKKLTPQAI 274
              L      L  +      E  L + +   +T   +           L S       A+
Sbjct: 366 IPSLYEIQARLSAMSGGATDEIRLAVGEYARSTGVELDASDNGLPSISLKSLSNKGAIAL 425

Query: 275 QVFNNRMRASRSAVLKL--NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
                      +       + L+ +++ +GRL     +   + TGR +            
Sbjct: 426 PGIAAWRDLCDARRTLASCDDLIASVSPNGRLHPLFGYD--TVTGRLTAKRP-------- 475

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                      +   +RS V A EG  ++ AD + IE R+ A  
Sbjct: 476 -----------------------ASMAMDQRLRSAVTAPEGSVIISADYSQIELRIAACF 512

Query: 393 AG--------------------EQWKLKAFETGED-----------LYVTTYARSFNVAP 421
           A                     +     A ++               Y+           
Sbjct: 513 AEKMRAGTGLPGMLATAFRTGVDPHLTTALQSVRQRGDIDFTGNAAAYIAGLCDEERCEL 572

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMA-STTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                 +R   K     L Y     +F +      GL           ++  + + +   
Sbjct: 573 KSRLFVERDTAKAQNFGLLYGMKDSSFWEYGRLAYGLTWTFEEAQAARDAWFKMYPEIAL 632

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
                Q      A E              + + H  V +                     
Sbjct: 633 LHDSYQSTFSAAAKET------------LFLKAHDGVFQ--------------------- 659

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTEN 600
                            +     SGR +                       T    L   
Sbjct: 660 -----------TTTSRVVSGATLSGRKV---------------------TATSPFLLLSY 687

Query: 601 IVQAVSRDILAEGMMNATKAGYD-IVLTVHDEIVCETPDT-DEFNASMLYHLM---TSNP 655
             Q    DI+   + +        +V  VHDE+V   P++  +  A+ +   M       
Sbjct: 688 ACQGTGADIIISAIASMDHGTRRHLVNVVHDELVLCVPESCSQREAAEVRRAMLSAEDAV 747

Query: 656 SWAKGLPLKAEGYESKRY 673
                +P   +      +
Sbjct: 748 FAQYNIPASVDITVGNSW 765


>gi|307327074|ref|ZP_07606264.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
 gi|306887372|gb|EFN18368.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
          Length = 562

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 95/629 (15%), Positives = 157/629 (24%), Gaps = 152/629 (24%)

Query: 76  ERTVLK-------ACFNLDIPIHRWICTLVLARSN-------GLPSALKA-VGEALKLSS 120
           +R V +             + + R                  G P +L A       L  
Sbjct: 49  DRWVWRSTAEVYPRLLAAGVRVERAYDIEAAEALLLGHEGRSGAPRSLAAAWARLRGLPV 108

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            +    +       +    E       P       L   Y +  V            L +
Sbjct: 109 PEDPPPRA---AGGQPSLFEPGPPPLPPGADPLETLLAVYAEQLVRTEAAEHPDRMRLLT 165

Query: 181 KEQ-ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV-----SSSR 234
             +     +   +   G          L   +  ER     E + L            +R
Sbjct: 166 TAESAGMLIAAEMRRAGVPWSADRHRKLLDELLGERYPGGLEPQRLVELAEEVSRAFGTR 225

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
               L   +    G     L  +T    L       P    +     +  R         
Sbjct: 226 VRPDLPAEVVKAFGRAGITLG-STRAWELERI--DHPAVEPLLRY-KKLYRLHTAHGWAW 281

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           +++   DGR R      G + +GRW+        +P+                       
Sbjct: 282 LQSWVRDGRFRPEY-LPGGTVSGRWTTNGGGALQIPK----------------------- 317

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                    VR  V+A  G +LVVAD   +E RVLA ++ +   ++   +G DLY T   
Sbjct: 318 --------VVRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGSGRDLYATLS- 368

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
                   +    +R + K+  L   Y            T+G  L   A L         
Sbjct: 369 -------DRAFSGRRELAKLALLGAVY----------GQTSGDGLKHLAAL--------- 402

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                                               R++          + +A     E 
Sbjct: 403 ------------------------------------RRRFPAAVAY---VDEAAR-AGEE 422

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
           G+ +     R  P V    ++      LP        +     +       + TR     
Sbjct: 423 GRLVRTWLGRTCPPVGGGAEEPADEAGLP----REQEEPSYGSTASARARGRFTR----- 473

Query: 595 GKLTENIVQAVSRD--ILAEGMMN--ATKAGYD--IVLTVHDEIVCETPDTDEFNA-SML 647
                 +VQ  + D  +L    +    T AG    IV   HDE++   P  +       +
Sbjct: 474 ----NFVVQGSAADWALLMLAALRRSLTGAGLRAEIVFFQHDEVIVHCPQEEADTVREAI 529

Query: 648 YHLMTSNPSWAKG-----LPLKAEGYESK 671
                +    A G      PL     E  
Sbjct: 530 AEAGETAGRIAFGPTPVRFPLTMAAVECY 558


>gi|284032329|ref|YP_003382260.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
 gi|283811622|gb|ADB33461.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836]
          Length = 551

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/381 (15%), Positives = 101/381 (26%), Gaps = 121/381 (31%)

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P    +     +  R       + +     DGR R      G + +GRW         
Sbjct: 252 DHPAVEPLIEY-KKLYRIYTANGWSWLNDWVHDGRFRPGF-VPGGTVSGRWITNGGGGLQ 309

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P+                                +R  V+A  G +LVVAD + +E RV
Sbjct: 310 IPK-------------------------------VIRRAVVADPGWRLVVADASQLEPRV 338

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA ++ +   ++      DLY             +     RA+ K+  L   Y       
Sbjct: 339 LAAISRDPGLMEVAGNAADLYKAVS--------DKAFSGDRAMAKLAVLGAIY------- 383

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                T+G  L   A L                                           
Sbjct: 384 ---GQTSGDGLKNLAAL------------------------------------------- 397

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
             R++  +     ++      +  E G+ +     R  P               PSG  L
Sbjct: 398 --RKRFPKAVAYVDD----AARAGEEGRLVRTWLGRTCP---------------PSGSQL 436

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDI 624
               +    +       +  R    G      +VQ  + D     M    ++      ++
Sbjct: 437 DSAQLEGPPADEPQVDSRRARAR--GRFTRNFVVQGSAADWALLMMAALRQSIATYKAEL 494

Query: 625 VLTVHDEIVCETPDTDEFNAS 645
           V   HDE++   P  +    +
Sbjct: 495 VFFQHDEVIVHCPAEEADQVA 515


>gi|218506492|ref|ZP_03504370.1| DNA polymerase I [Rhizobium etli Brasil 5]
          Length = 156

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 19/156 (12%)

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----- 179
            G   I      +        N             Y   D  VT  ++  L+P       
Sbjct: 6   LGHTPIPY----KDVAGSGRANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGL 61

Query: 180 -----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                  E+ L  +   +  RG  VD  +   L+  +     +L+ E+ +L      +  
Sbjct: 62  TSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAG-ERFNIG 120

Query: 235 CLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSN 266
             ++L   LF + GL     T+    +T   VL   
Sbjct: 121 SPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDL 156


>gi|32442293|gb|AAP82217.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/440 (14%), Positives = 116/440 (26%), Gaps = 121/440 (27%)

Query: 95  CTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            TLVL+           +LKA GE +  + +   EG                    +  +
Sbjct: 1   DTLVLSSLANPSLEGGHSLKAWGERI-HNLKGDYEG------------------GWETFN 41

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------QELWYLDQTINDRGYCVDVA 202
            E       YC+ DV + +++++RLE               ++  +       G   D  
Sbjct: 42  PEMLA----YCQQDVRLLKDLYRRLEVQLEDFDEASIELEHKVAEIIYRQEQTGVLFDER 97

Query: 203 LAHTLNQIVDVERTKLDQELESLT------------------------------------ 226
             + L   +  +  ++  E+  +                                     
Sbjct: 98  KGYELLAELKEKVHEIVLEVREVFKPLPVWKSLQVLKNPLKKDGNPSVAYQKQLDRGAHY 157

Query: 227 ---------YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAI 274
                         +    +++  +L        E   + +    ++VL+      P+A 
Sbjct: 158 DSDGDWGYKDYPEFNLGSRQQVSRYLQHFGWSPTEWTDKGSVIVNEKVLADV--DIPEAK 215

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +      +    V  +   +EA+  DGR+ G +   GA  TGR +        +P    
Sbjct: 216 MIMEYFTISK--RVAMVKAWLEAVGDDGRIHGRVNSCGA-VTGRMTHSKPNLAQVP---- 268

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                      +  R   I  EGK LV  D +G+E R+LA    
Sbjct: 269 --------------------AIYSPYGEECRELWIVPEGKCLVGIDASGLELRMLAHYMN 308

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           ++                                R   K    A  Y GG     ++   
Sbjct: 309 DKDY---------TDEILNGDIHTANQLAAGLQSRDQAKTFIYAFLYGGGDGKIGEIVGG 359

Query: 455 TGLNLNTFAHLVKTNSAPEE 474
              +          N+    
Sbjct: 360 KAKDGQRLKAKFLDNTPALR 379


>gi|323512097|gb|ADX87557.1| DNA polymerase [Vibrio phage ICP3_2009_A]
          Length = 678

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 94/783 (12%), Positives = 170/783 (21%), Gaps = 219/783 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKE 59
           M  L  D ET   +D      C +  D       +   +      WD        + L E
Sbjct: 1   MKLLLSDIETNGLLDTVDKFHCAWTVD-------YFTGEWKAYRPWDF---EQYIKDL-E 49

Query: 60  ALENTDVTIVAHN-SYFERTVLKA----CFN--LDIPIHRWICTLVLARSNGL------- 105
           A       IV HN   ++   LK      F   L+IP    + TLV++R           
Sbjct: 50  ACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDA 109

Query: 106 --------------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP--- 148
                           +LKA G  L        E +     F +     C  D       
Sbjct: 110 GLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWVEFNEPMMDYCKQDVQITLKL 169

Query: 149 ------------------------NHREAW------------------RLFGEYCKGDVT 166
                                    H  AW                  RL+ E       
Sbjct: 170 FEKFMGDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRRAE 229

Query: 167 VTREIFKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +  E+ +                  +            Y    ++  +  +    +   L
Sbjct: 230 ILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTLYL 289

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQ- 275
                +    +  +      +   L     +  +              S         + 
Sbjct: 290 KDAPFTPVQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLVPEE 349

Query: 276 ------VFNNRMRASRS--AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                 +    +   +    + + +     M+  G + G +   GA  TGR +       
Sbjct: 350 FLPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYIHGQVNPNGA-VTGRATHSYPNLA 408

Query: 328 NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
            +P        E   +             P                    V  D +G+E 
Sbjct: 409 QVPSIRKYKGVECRSLFGAEHHRDYHTGKP-----------------WIQVGVDASGLEL 451

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGA 445
           R L     +    +   T  +  + T  +    +             K       Y  GA
Sbjct: 452 RCLGHFMAKFDDGEYINTILNGDIHTQNQIAAGLPTRDN-------AKTFIYGFLYGAGA 504

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
           +   ++    G                                                 
Sbjct: 505 QKIGEIVGKFGEEGKKAGA----------------------------------------E 524

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           + K + +    ++ L  ++  A  +  +        K +               +    G
Sbjct: 525 LIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------WIKGLDG 572

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621
           R +  R                             ++Q+    I  + ++        AG
Sbjct: 573 RKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWDKGMQAAG 611

Query: 622 YD--------IVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYES 670
           Y          +  VHDE        +  E    +    M      W    PL  EG   
Sbjct: 612 YKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPLDTEGKIG 671

Query: 671 KRY 673
             +
Sbjct: 672 ANW 674


>gi|33322851|gb|AAQ07161.1|AF496471_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 95

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 16/100 (16%)

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCE 635
                  R            +Q  + DI+   M+N  K          +V+ VHDE++ +
Sbjct: 1   NVRSFAERTAINSP------IQGSAADIMKIAMINVQKKLDELGLKTKMVVQVHDELIFD 54

Query: 636 TPDTDEFNASMLY-HLMTSNPSWAKGLPLKAE-GYESKRY 673
            P  +      +   +M +       +PL A+ G+    Y
Sbjct: 55  VPADELETIXKIVPSVMQAAVK--LDVPLVADAGWGHDWY 92


>gi|84662633|ref|YP_453598.1| putative DNA directed DNA polymerase [Xanthomonas phage OP1]
 gi|84570682|dbj|BAE72745.1| putative DNA directed DNA polymerase [Xanthomonas oryzae phage OP1]
          Length = 793

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 63/497 (12%), Positives = 127/497 (25%), Gaps = 108/497 (21%)

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
           D    VD +  +         + K   + + +    +S  +     + ++F      L +
Sbjct: 313 DPAEVVDGSELYYQIDRYAGGKQKGLPKTKKVKVPDLSKPKMSVVEREYIFPGFVQPLPE 372

Query: 254 ------LTETTCQRVLSSNKKLTPQAIQVFNNRMRA--SRSAVLKL----------NTLV 295
                     T + V  +          V     +A  ++                  ++
Sbjct: 373 WQGSAPGQYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGML 432

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
             + SDG +   L  +  + TGR S  +   QNLP+  +S                    
Sbjct: 433 SLVGSDGIVHHQL-QMVNTVTGRLSSALPNLQNLPKGDKS-------------------- 471

Query: 356 PLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                   V+   ++   G  +V +D   +E  V   ++G+   +     G D++    A
Sbjct: 472 -------EVKKLFVSRFPGGFIVQSDFTALEIYVQGNLSGDSALIADLRAGLDMHCKRLA 524

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
           +   V+            K                          +         ++   
Sbjct: 525 QKEGVSYD----YVFERAK--------------------------DKKHIDYIVWNSKRS 554

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
                +F R         A          + + +   + +  V E      +  E     
Sbjct: 555 KAKGFSFQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGVPEYNKRTMKELE----- 609

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ---LTR-- 589
                   R  +P          + + L  G    +R     R  +  T        R  
Sbjct: 610 --------RNLIPSKMYIASSYEVGVSLNLG-KSYFRTPDGKRYTMYQTQAPKWLWEREG 660

Query: 590 --EYTYGGKLTENIVQAVSRDILAEGMMNA----TKAG-----YDIVLTVHDEIVCE-TP 637
                         VQ    + +   M          G       IV TVHD    +  P
Sbjct: 661 VQLTFSSTTTKNYPVQGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAP 720

Query: 638 DTDEFNASMLYHLMTSN 654
           +  + + ++L+  M   
Sbjct: 721 EVAKESMALLHACMEEA 737



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 69/284 (24%), Gaps = 39/284 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L  D ET     L K     +     +  + F   + +         H   +P+     +
Sbjct: 19  LAWDLET-GTRTLHKRKASPFDIQNDIWAVGFGRSWSESKGYHKAV-HG--IPEDWFRVI 74

Query: 62  ENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICTLVLARSNGLP------SA 108
            N    +   N  F+                      +     +              ++
Sbjct: 75  LNNCRVLAGFNIKFDLLYALRDKDNHTAWMQWVTDGGKVWDCQLAEYLLQGMAQEWQIAS 134

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V       S K    K         E      + +     +     GE   GD+  T
Sbjct: 135 MDDVAPLYG-GSCKDHAVKSC------WENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNT 187

Query: 169 REIFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             IFK               +               G  VDVA    + Q +  +   + 
Sbjct: 188 ANIFKGQLKLAKDRGQIASITLNNAALLYTVEAELNGMYVDVAKGDEIRQQLLAKLVHIS 247

Query: 220 QELESLTYGL---VSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
           +++            +    ++    LF   G+  +   ++  +
Sbjct: 248 EQVNKGLPEDLPFEFNWASPKQRSALLFG-GGVKYKSREQSRDE 290


>gi|68299732|ref|YP_249581.1| DNA polymerase [Vibriophage VP4]
 gi|66473271|gb|AAY46280.1| DNA polymerase [Vibriophage VP4]
          Length = 678

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 97/783 (12%), Positives = 178/783 (22%), Gaps = 219/783 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKE 59
           M  L  D ET   +D      C +  D       +   +      WD        + L E
Sbjct: 1   MKLLLSDIETNGLLDTVDKFHCAWTVD-------YFTGEWKAYRPWDF---EQYIKDL-E 49

Query: 60  ALENTDVTIVAHN-SYFERTVLKA----CFN--LDIPIHRWICTLVLARSNGL------- 105
           A       IV HN   ++   LK      F   L+IP    + TLV++R           
Sbjct: 50  ACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDA 109

Query: 106 --------------PSALKAVGEALKLSSQKMEEGK-------ELIARFCK--------- 135
                           +LKA G  L        E +       E +  +CK         
Sbjct: 110 GLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWIEFNEPMMDYCKQDVQVTLKL 169

Query: 136 -----------GETHECLYDRNKPNHREAW------------------RLFGEYCKGDVT 166
                          + L +     H  AW                  RL+ E       
Sbjct: 170 FEKFMGDTWYFPNGVDGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRRAE 229

Query: 167 VTREIFKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +  E+ +                  +            Y    ++  +  +    +   L
Sbjct: 230 ILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKRPTLAKTLYL 289

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL-------TETTCQRVLS-SNKKLT 270
                +    +  +      +   L     +  +          + T   V+        
Sbjct: 290 KDAPFTPIQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLIPEE 349

Query: 271 PQAI-QVFNNRMRASRS--AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                ++    +   +    + + +     M+  G + G +   GA  TGR +       
Sbjct: 350 FIPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYIHGQVNPNGA-VTGRATHSYPNLA 408

Query: 328 NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
            +P        E   +             P                    V  D +G+E 
Sbjct: 409 QVPSIRKYKGVECRSLFGAEHHLDYHTGKP-----------------WIQVGVDASGLEL 451

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGA 445
           R L     +    +   T  +  + T  +    +             K       Y  GA
Sbjct: 452 RCLGHFMAKFDDGEYINTILNGDIHTQNQIAAGLPTRDN-------AKTFIYGFLYGAGA 504

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
           +   ++    G                                                 
Sbjct: 505 QKIGEIVGKFGEEGKKAGA----------------------------------------E 524

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           + K + +    ++ L  ++  A  +  +        K +               +    G
Sbjct: 525 LIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------WIKGLDG 572

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AG 621
           R +  R                             ++Q+    I  + ++   K    AG
Sbjct: 573 RKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWDKGMRAAG 611

Query: 622 YD--------IVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYES 670
           Y          +  VHDE        +  E    +    M      W    PL  EG   
Sbjct: 612 YKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPLDTEGKIG 671

Query: 671 KRY 673
             +
Sbjct: 672 ANW 674


>gi|325171294|ref|YP_004251265.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512000|gb|ADX87462.1| DNA polymerase [Vibrio phage ICP3]
 gi|323512146|gb|ADX87605.1| DNA polymerase [Vibrio phage ICP3_2008_A]
 gi|323512194|gb|ADX87652.1| DNA polymerase [Vibrio phage ICP3_2007_A]
          Length = 678

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 95/783 (12%), Positives = 174/783 (22%), Gaps = 219/783 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-WDCVHDPVMPQVLKE 59
           M  L  D ET   +D      C +  D       +   +      WD        + L E
Sbjct: 1   MKLLLSDIETNGLLDTVDKFHCAWTVD-------YFTGEWKAYRPWDF---EQYIKDL-E 49

Query: 60  ALENTDVTIVAHN-SYFERTVLKA----CFN--LDIPIHRWICTLVLARSNGL------- 105
           A       IV HN   ++   LK      F   L+IP    + TLV++R           
Sbjct: 50  ACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLKDTDA 109

Query: 106 --------------PSALKAVGEALKLSSQKMEEGK-------ELIARFCK--------- 135
                           +LKA G  L        E +       E +  +CK         
Sbjct: 110 GLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWVEFNEPMMDYCKQDVQVTLKL 169

Query: 136 -----------GETHECLYDRNKPNHREAW------------------RLFGEYCKGDVT 166
                          + L +     H  AW                  RL+ E       
Sbjct: 170 FEKFMGDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRRAE 229

Query: 167 VTREIFKRLEPL--------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +  E+ +                  +            Y    ++  +  +    +   L
Sbjct: 230 ILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTLYL 289

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE--TTCQRVLSSNKKLTPQAIQ- 275
                +    +  +      +   L     +  +              S         + 
Sbjct: 290 KDAPFTPVQHVTFNPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLVPEE 349

Query: 276 ------VFNNRMRASRS--AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                 +    +   +    + + +     M+  G + G +   GA  TGR +       
Sbjct: 350 FLPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYIHGQVNPNGA-VTGRATHSYPNLA 408

Query: 328 NLPR-PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
            +P        E   +             P                    V  D +G+E 
Sbjct: 409 QVPSIRKYKGVECRSLFGAEHHRDYHTGKP-----------------WIQVGVDASGLEL 451

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGA 445
           R L     +    +   T  +  + T  +    +             K       Y  GA
Sbjct: 452 RCLGHFMAKFDDGEYINTILNGDIHTQNQIAAGLPTRDN-------AKTFIYGFLYGAGA 504

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
           +   ++    G                                                 
Sbjct: 505 QKIGEIVGKFGEEGKKAGA----------------------------------------E 524

Query: 506 VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           + K + +    ++ L  ++  A  +  +        K +               +    G
Sbjct: 525 LIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------WIKGLDG 572

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAG 621
           R +  R                             ++Q+    I  + ++        AG
Sbjct: 573 RKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWDKGMQAAG 611

Query: 622 YD--------IVLTVHDEIVCETP--DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYES 670
           Y          +  VHDE        +  E    +    M      W    PL  EG   
Sbjct: 612 YKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPLDTEGKIG 671

Query: 671 KRY 673
             +
Sbjct: 672 ANW 674


>gi|153840366|ref|ZP_01993033.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
 gi|149745971|gb|EDM57101.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810]
          Length = 166

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 23/129 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S   +             ++  +F  D+         HD            + 
Sbjct: 36  AFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVL 85

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
           + LK  LE+     V  N  ++ +VL     +++   ++  T++ +              
Sbjct: 86  EQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMDS 143

Query: 114 EALKLSSQK 122
            AL+     
Sbjct: 144 LALRFLQHS 152


>gi|225420465|ref|ZP_03762768.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme
           DSM 15981]
 gi|225040896|gb|EEG51142.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme
           DSM 15981]
          Length = 110

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 18/116 (15%)

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620
           GR     ++ +             R            +Q  + D++   M+   +     
Sbjct: 2   GRRRPIPELKSANFMQRQF---GERVAMNSP------IQGTAADVMKIAMIRVDRELKKR 52

Query: 621 --GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYESKRY 673
                IVL +HDE++ ET  ++      +L   M         + L+ +      +
Sbjct: 53  NMKSRIVLQIHDELLVETERSEVEAVKALLEEQMKGAAD--LKVALEVDAKVGDSW 106


>gi|71902389|ref|ZP_00684353.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71727877|gb|EAO30114.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 300

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 130/285 (45%), Gaps = 43/285 (15%)

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF 310
           L D+ + T +R L  +  L     ++ + R +AS ++  K   L+   + DGRLRGTLQF
Sbjct: 13  LPDMQQHTVERCL-DDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSGDGRLRGTLQF 71

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS--DPDPLQIISDCVRSCV 368
            GASRTGRW+G +F P NLPRP+ S   +   I  +          D + + S  +RSC+
Sbjct: 72  NGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCL 131

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGE--------------------------------- 395
           IA   KKLVVADL+ IE RVLAW+AGE                                 
Sbjct: 132 IAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHSGEAITHGALRG 191

Query: 396 -------QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
                    + +    G+D+Y   YA SF +AP  VTK QR IGKV ELALGY GG  AF
Sbjct: 192 APITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAF 251

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
              A+   ++L   A         +         + ++       
Sbjct: 252 AAFAAMYHIDLEAMAEQAALPPLLDTAARPFPHMKLLRRASNITG 296


>gi|163814577|ref|ZP_02205966.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC
          27759]
 gi|158450212|gb|EDP27207.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC
          27759]
          Length = 115

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MATLFIDFETRSPIDLTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
          M TL ID ET S + L K G  +Y E  +  ++LFA+  D+ PV++ D      +P+ + 
Sbjct: 1  MKTLSIDIETYSDVPLQKTGAYRYVESPNFEILLFAYSTDNQPVQVIDPACGEQIPKEVF 60

Query: 59 EALENTDVTIVAH 71
           ALE+  V   A 
Sbjct: 61 LALEDEFVIKWAW 73


>gi|148727216|ref|YP_001285708.1| p39 [Xanthomonas phage Xop411]
 gi|116583516|gb|ABK00186.1| p39 [Xanthomonas phage Xop411]
          Length = 793

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/431 (12%), Positives = 107/431 (24%), Gaps = 102/431 (23%)

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRA--SRSAVLKL----------NTLVEAMNSD 301
               T + V  +          V     +A  ++                  ++  +  D
Sbjct: 379 GQYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGKD 438

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G +   L  +  + TGR S  +   QNLP+  +S                          
Sbjct: 439 GIVHHQL-QMVNTVTGRLSSALPNLQNLPKGDKS-------------------------- 471

Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             V++  ++   G  +V +D   +E  V   ++G+   +     G D++    A+   V+
Sbjct: 472 -EVKTLFVSRFPGGFIVQSDFTALEIYVQGNLSGDSALIADLRAGLDMHCKRLAQKEGVS 530

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                       K                          +         ++        +
Sbjct: 531 YD----YVFERAK--------------------------DKKHIEYIVWNSKRSKAKGFS 560

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           F R         A          + + +   + +  + E      +  E           
Sbjct: 561 FQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELE----------- 609

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ---LTR----EYTY 593
             R  VP            + L  G    +R     R  +  T        R        
Sbjct: 610 --RNLVPSKMYITSSYEAGVSLNLG-KSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFS 666

Query: 594 GGKLTENIVQAVSRDILAEGMMNA----TKAG-----YDIVLTVHDEIVCE-TPDTDEFN 643
                   VQ    + +   M          G       IV TVHD    +  P+  + +
Sbjct: 667 STTTKNYPVQGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKES 726

Query: 644 ASMLYHLMTSN 654
            ++L+  M   
Sbjct: 727 MALLHACMEEA 737



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 66/268 (24%), Gaps = 38/268 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L  D ET +   L K     +     +  + F   + +         H   +P+     +
Sbjct: 19  LAWDLETGTKT-LHKRKASPFDVQNDIWAVGFGRSWQESKGYHKAV-HG--IPEDWFRVI 74

Query: 62  ENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICTLVLARSNGLP------SA 108
            N    +V  N  F+                  +   +     +              ++
Sbjct: 75  LNNCRVLVGFNIKFDLLYALRDKANHTAWMQWVVEGGKVWDCQLAEYLLQGMAQEWQIAS 134

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V       S K    K         E      + +     +     GE   GD+  T
Sbjct: 135 MDDVAPLYG-GSCKDHAVKSC------WENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNT 187

Query: 169 REIFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             IFK               +               G  VDVA    + Q +  +   L 
Sbjct: 188 ANIFKGQLKLAKERGQIASITLNNAALLYTVEAELNGMFVDVAKGEEIRQQLLAKLMHLS 247

Query: 220 QELESLTYGL---VSSSRCLEKLKTWLF 244
           +++            +    ++    LF
Sbjct: 248 EQVNKGLPEDLPFEFNWASPKQRSALLF 275


>gi|256831724|ref|YP_003160451.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603]
 gi|256685255|gb|ACV08148.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603]
          Length = 600

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 72/498 (14%), Positives = 117/498 (23%), Gaps = 151/498 (30%)

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
             + RE++    P      E    +Q        V  A               + QEL  
Sbjct: 193 ALIAREMYAVGVPWDRDHHEALLREQLGERPAVGVRPAALEA-----------VAQELRR 241

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           L      +    + L   L    G+ +   ++   +          P    +       +
Sbjct: 242 LLDAPELNPDSPKDLLRALNSA-GIPVTTTSKWALRE------HRHPALAPLERY-KHLA 293

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           R         ++   SDGR R      G   TGRW         LPR             
Sbjct: 294 RLWTAHGWAWLDEWVSDGRYRPVY-TPGGVVTGRWGADGGGALQLPR------------- 339

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                              +R    A +G   V+AD + +E RVLA M+G+    +A   
Sbjct: 340 ------------------AIRGAARAGDGFTFVIADASQLEPRVLAAMSGDAAMAEAGRG 381

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
                       +           R   K   L   Y G          TTG++      
Sbjct: 382 ---------GDMYQRIADAGVVPSREHAKYGMLGAMYGG----------TTGVSAQVLPQ 422

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                   + +  A                   ++G          R     V    +E 
Sbjct: 423 ------FRQAFPTAMAMVESAARVGERGGQVTTWLG----------RTSPPGVVSHPDES 466

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
             A              + R +                   RS  Y              
Sbjct: 467 DDA-----------DVARERRL-------------------RSRSY-------------- 482

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYD------------IVLTVHDEI 632
                    G      IVQ  + +     M+      +             +V  +HDE+
Sbjct: 483 ---------GRFTRNFIVQGSAAEWAMAWMVEIRLRLHQLSLGDPTLSAPSLVFFLHDEV 533

Query: 633 VCETPDTDEFNASMLYHL 650
           +  TP       + +  +
Sbjct: 534 LIHTPVEWAETVAEVVRV 551


>gi|284009397|emb|CBA76584.1| phage DNA polymerase [Arsenophonus nasoniae]
          Length = 92

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 4  LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
          LF D ET S I +  CG  +YAE+  ++LFA+ ++   V++WD   D  MP  LK   + 
Sbjct: 5  LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHGSVKVWDVTEDKTMPTDLKSYFDA 63

Query: 64 TDVTIVAHN-SYFERTVLKACFNLDIPI 90
           ++  V HN   F+  +LK   N+D+P+
Sbjct: 64 PEILTVWHNGGMFDTVILKHVLNIDLPL 91


>gi|32128451|ref|NP_858986.1| DNA polymerase lacking N-terminal exonuclease domain [Xanthomonas
           phage Xp10]
 gi|31788514|gb|AAP58706.1| 38L [Xanthomonas phage Xp10]
          Length = 794

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 55/431 (12%), Positives = 108/431 (25%), Gaps = 102/431 (23%)

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRA--SRSAVLKL----------NTLVEAMNSD 301
               T + V  +          V     +A  ++                  ++  + SD
Sbjct: 379 GQYKTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGSD 438

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
           G +   L  +  + TGR S  +   QNLP+  +S                          
Sbjct: 439 GIVHHQL-QMVNTVTGRLSSALPNLQNLPKGDKS-------------------------- 471

Query: 362 DCVRSCVIAS-EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
             V++  ++   G  +V +D   +E  V   ++G+   +     G D++    A+   V+
Sbjct: 472 -EVKTLFVSRFPGGFIVQSDFTALEIYVQGNLSGDIALIADLRAGLDMHCKRLAQKEGVS 530

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                       K                          +         ++        +
Sbjct: 531 YD----YVFERAK--------------------------DKKHIEYIVWNSKRSKAKGFS 560

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           F R         A          + + +   + +  + E      +  E           
Sbjct: 561 FQRAYGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELE----------- 609

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ---LTR----EYTY 593
             R  +P            + L  G    +R     R  +  T        R        
Sbjct: 610 --RNLIPSKMYIASSYEAGVSLNLG-KSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFS 666

Query: 594 GGKLTENIVQAVSRDILAEGMMNA----TKAG-----YDIVLTVHDEIVCE-TPDTDEFN 643
                   VQ    + +   M          G       IV TVHD    +  P+  + +
Sbjct: 667 STTTKNYPVQGTGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKES 726

Query: 644 ASMLYHLMTSN 654
            ++L+  M   
Sbjct: 727 MALLHACMEEA 737



 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 64/268 (23%), Gaps = 38/268 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L  D ET     L K     +     +  + F   + +         H   +P+     +
Sbjct: 19  LAWDLET-GTRTLHKRKASPFDVQNDIWAVGFGRSWQESKGYHKAV-HG--IPEDWFRVI 74

Query: 62  ENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICTLVLARSNGLP------SA 108
            N    +V  N  F+                      +     +              ++
Sbjct: 75  LNNCRVLVGFNIKFDLLYALRDKANHAAWMQWVTDGGKVWDCQLAEYLLQGMAQEWQIAS 134

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           +  V       S K    K         E      + +     +     GE   GD+  T
Sbjct: 135 MDDVAPLYG-GSCKDHAVKSC------WENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNT 187

Query: 169 REIFKRLEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
             IFK               +               G  VDVA    + Q +  +   L 
Sbjct: 188 ANIFKGQLKLVKERGQIASITLNNAALLYTVEAELNGMFVDVAKGEEIRQQLLAKLMHLS 247

Query: 220 QELESLTYGL---VSSSRCLEKLKTWLF 244
           +++            +    ++    LF
Sbjct: 248 EQVNKGLPEDLPFEFNWASPKQRSALLF 275


>gi|66821457|ref|XP_644204.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4]
 gi|60472150|gb|EAL70103.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4]
          Length = 519

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 117/362 (32%), Gaps = 53/362 (14%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELE----SLTYGLVSSSRCLEKLKTWLFLET 247
           +   G C D +     ++ +     +++  +      L      +    +++  W     
Sbjct: 1   MEIEGVCCDTSKLDNCSEKILKRIKEINCSVYNEDSKLIREPKINLNSPQQVLDWFGKNL 60

Query: 248 -GLHLEDLTETTCQ----RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
               +    + T      + L+ N K     I   +N  + ++     +  ++++  ++ 
Sbjct: 61  ENYKITSSNKETLAIERVKFLNCNNKKVVDFIDSVSNVRKLTKLNSSYIKIILKSNRTNN 120

Query: 303 --RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
                  L     + TGR S      Q+LPR S    +L+ I      +  +  +     
Sbjct: 121 LKFQFSCLWNQTGTTTGRLSSTKPNFQSLPRNSTKLTKLNNIDFDDDDNFNNINNNNNNN 180

Query: 361 SDC------------------------------------VRSCVIASEGKKLVVADLAGI 384
           +                                      +R+  I+ EG  LV  D   I
Sbjct: 181 NGEKNLYTLLNNDNDGDDDEDDDNIDELNSYNNNNNIINIRNSFISREGYSLVALDYNQI 240

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYAR-SFNVAPAQVTKDQRAIGKVMELALGYQG 443
           E R++A  + ++  ++ FE+G+D+     +R    V P  V K+ R   K +   + Y  
Sbjct: 241 ELRIMAHYSKDKHLIEYFESGKDVINMMASRLIDGVDPNNVKKEIRDKVKRIVYGILYGI 300

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
              +  K+     L ++        N+   ++E+  +F +   +      +         
Sbjct: 301 QKNSLHKL-----LGVSLDEAQEHINNFNLKFEEVSSFIKINSQIKNGKILTIGNRIRRF 355

Query: 504 ER 505
           + 
Sbjct: 356 QD 357


>gi|302845441|ref|XP_002954259.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f.
           nagariensis]
 gi|300260464|gb|EFJ44683.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f.
           nagariensis]
          Length = 689

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/394 (15%), Positives = 114/394 (28%), Gaps = 26/394 (6%)

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E ++ +L   +   G  VD A        V      L     SL  G   +
Sbjct: 272 WLRPQAVQVEMQVCWLLAQMEAVGMAVDTAGLGRQAAAVRQRMEALTSAASSLLGGRTIN 331

Query: 233 SRCLEKLKTWLFLETGLHLE--DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
                +L   L+ E  L                ++   +T +A QV   RM    +A  +
Sbjct: 332 LGSSAQLAVVLYDELELPPPVPQGQRDAAGVSRTAVPGVTERAKQVVGTRMD-GTAAGAE 390

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           L+         GR     ++    R  +W+   +            +  +          
Sbjct: 391 LDDGGGGGGGGGRRGPGGRWNRLRRGFQWAVTKY-----EVVVPLGDTTEGSPCGGGGEE 445

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            +       +    R+  +A  G+ LV AD + IE R+LA M+G+    +  + G +   
Sbjct: 446 GAGVLRGDRLVVVARNAFVAPPGRLLVAADYSQIELRLLAHMSGDLRLQELLKRGVEQSE 505

Query: 411 TTYARSF---------------NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                                   APA V+   R   K +   + Y   A+   +  +  
Sbjct: 506 GRGGGGGGTDAFRHIAASWLRPGTAPADVSSRDREQVKRVVYGIIYGMTAQGLAQQLAEY 565

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           G+ L     L    S    +   + F      +   H      +     R          
Sbjct: 566 GVGLEEATAL--RTSFLRHFAGVQAFITSSLYHARRHGYITTGLLGR-RRPIAGVNSSDP 622

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
           RV     ++H      +++   ++ R    V  +
Sbjct: 623 RVVNSIVQIHDELVFEVDSRPEVVRRLVVAVREI 656


>gi|312062862|gb|ADQ12724.1| DNA polymerase A domain-like protein [Acinetobacter phage phiAB1]
          Length = 494

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/423 (12%), Positives = 111/423 (26%), Gaps = 92/423 (21%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL---------NTLVEAMNSDGRLRGT 307
           +T    L        +A Q   +  +  +               + +++ +  +G +   
Sbjct: 107 STGDDAL-DLVAKFTEAAQPLRDMKKLIKDTTTYYLVEDDKGKQSGMLQYVEPNGIIHHQ 165

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
           L    A+ TGR SG     QN+PR                             +  V+  
Sbjct: 166 LN-NCATVTGRLSGSKPNLQNVPRDG---------------------------TSKVKEM 197

Query: 368 VIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
            ++  G   +LV  D + +E   LA ++G++  L+    G D++    A +       V 
Sbjct: 198 FVSRFGSDGRLVECDYSALEVVALASISGDKNLLQQLIDGTDMHCYRLAGALGEDYETVF 257

Query: 426 KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
           +                                 +      K             F    
Sbjct: 258 EK------------------------------CHDKSHPEHKKYKQLRTDIKPRAFANQY 287

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
             +    +          E+ K+  R+     S       +     +E     +  +   
Sbjct: 288 GASAMGISFSTGCSLEEAEQFKETERKLFPESSTF---SERIVRPQVEQNGLSMPMESEL 344

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           V  ++    +        SG    +      R +         +      ++    +Q  
Sbjct: 345 VNGIWKHFRRG--FFKALSGTCYSF------RQFPKYVKGVGEKYDYKDTQIANYPIQGE 396

Query: 606 SRDILAEGMMNATK---------AGYDIVLTVHDEIVCETPDTDEFNA--SMLYHLMTSN 654
           +  I+        +              + TVHD I  +  D +      + +  +M S 
Sbjct: 397 ASFIVQCACGRVIRWLIGNDFFGGKALPINTVHDCIQLDCADRETAIMVGTKVKEIMDST 456

Query: 655 PSW 657
           P W
Sbjct: 457 PKW 459


>gi|317124628|ref|YP_004098740.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
 gi|315588716|gb|ADU48013.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043]
          Length = 557

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 76/478 (15%), Positives = 122/478 (25%), Gaps = 130/478 (27%)

Query: 188 LDQTINDRGYCVDVALAHTLN----------QIVDVERTKLDQE--LESLTYGLVSSSRC 235
           L   +   G  VD   A  L                    L  +  L     G  +  R 
Sbjct: 161 LCLELERDGLPVDRLAAEDLISAAAGPRPRDDADAARIRALRDQVVLRHARGGDRTDLRN 220

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
              ++  L    G+ + +        VL   +   P    + + R     +       L 
Sbjct: 221 PAHVRAML-QSVGVDVPNTR----AWVLEPYRHTHPLVDALLSWRKDERIATTYGYRWLD 275

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           E +  D RLRG          GR +       NLP P                       
Sbjct: 276 EHVGGDDRLRGA-WTACDGAAGRMTAQN-GLHNLPAP----------------------- 310

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R  + A      V ADL  +E RVLA ++ ++   +A  +           
Sbjct: 311 --------LRPAIRAEPQHVFVRADLGQVEPRVLAVVSEDRAFAEATRS----------D 352

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
                 A      R++ KV  LA  Y   + A  +                         
Sbjct: 353 DLYAPVADKLGVDRSVAKVAVLAAMYGQRSGAAGEALKDL-------------------- 392

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
           E A      + +      +    + T   R+ +            +     A + T   G
Sbjct: 393 EAAYPVAMGVLDRAYADGVARRPLRTFGGRLIR------------FGSAGDAADPTRAEG 440

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
            A    +                    PSG  L       +R   +    +  R      
Sbjct: 441 HADQEGE--------------------PSGIRL-----DGDRGAADAARGRFAR------ 469

Query: 596 KLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                I+Q  + ++          A    G  IVL +HDEI+   P +    A     
Sbjct: 470 ---NAIIQGSAAELFKAWAATVRHAVRPLGGQIVLCLHDEILVHVPRSRAEEARRAVE 524


>gi|302529171|ref|ZP_07281513.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
 gi|302438066|gb|EFL09882.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
          Length = 566

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 67/440 (15%), Positives = 115/440 (26%), Gaps = 114/440 (25%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
                L  ++ +   G   +      +   L  E G+ +    +   Q +        P 
Sbjct: 205 KALVDLAAKISAALGGRPVNPDSSASVVRALARE-GIEVPAARKYLLQDI------DHPA 257

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +       SR         ++   +DGR R     +G   +GRW+        +PR 
Sbjct: 258 VAPLLEY-KELSRLHSANGWAWLDEWVTDGRFRPHY-VVGGVVSGRWATRGGGALQIPR- 314

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +RSC  A  G KLVVAD A +E RVL  +
Sbjct: 315 ------------------------------ALRSCASADPGWKLVVADGAQLEPRVLTAL 344

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +                                                  G +   ++A
Sbjct: 345 S--------------------------------------------------GDRRLAEVA 354

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           + T L       L                 R   +     A+     G     +    RQ
Sbjct: 355 AATDLYARLAEALFSGTRYVPLRPGDTRDDRSRAKIAMLSAMYGGTSG-EAGPLLALLRQ 413

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
           +          + +A     E G+ + +R  R  P               PS        
Sbjct: 414 RFPDAVSY---VERAA-AAGERGERVRSRLGRTSPA--------------PSAAWRALTG 455

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---GYDIVLTVH 629
                    T  R+ +R  ++G      +VQA + D+ A  +            +V  +H
Sbjct: 456 GLTEDEATETRARRASR--SWGRFTRNFVVQASAADLTAVLLATLRGRLPDPAHLVFFLH 513

Query: 630 DEIVCETPDTDEFNASMLYH 649
           DE++   P       + +  
Sbjct: 514 DEVIVHAPAELADEVAEIVE 533


>gi|77407374|ref|ZP_00784270.1| DNA polymerase I [Streptococcus agalactiae H36B]
 gi|77174018|gb|EAO76991.1| DNA polymerase I [Streptococcus agalactiae H36B]
          Length = 91

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD 640
             R            +Q  + DIL   M+N  +          ++L VHDEIV E P+ +
Sbjct: 2   AERTAINSP------IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEE 55

Query: 641 EFNASMLY-HLMTSNPSWAKGLPLKAEGYESKRY 673
                 L    M S  S    +PL A+    + +
Sbjct: 56  IGAIRELVTKTMESAIS--LSVPLIADENAGETW 87


>gi|156390270|ref|XP_001635194.1| predicted protein [Nematostella vectensis]
 gi|156222285|gb|EDO43131.1| predicted protein [Nematostella vectensis]
          Length = 203

 Score = 98.3 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 45/187 (24%), Gaps = 42/187 (22%)

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
           VK +    E      +                      +   +++  K   ++E   +  
Sbjct: 45  VKVDFKERERTKRIVYSVIYGVGRERLGNTLCVEPNEAKGFMESFLGKFPGINEFSRKCI 104

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
           +                              N  +     R      + +          
Sbjct: 105 E--------------------------DCNTNGFVSTIFKRKRWIPHIKSRDF---QIRS 135

Query: 586 QLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPD 638
           Q  R+          +VQ  + D+    M+    A          ++L +HDE++ E  D
Sbjct: 136 QAERQA------VNFVVQGSAADLCKSAMIQIVHALEKDVSLKARLLLQIHDELLLEVAD 189

Query: 639 TDEFNAS 645
           TD     
Sbjct: 190 TDIDRVK 196


>gi|121730180|ref|ZP_01682572.1| DNA polymerase I [Vibrio cholerae V52]
 gi|121628071|gb|EAX60613.1| DNA polymerase I [Vibrio cholerae V52]
          Length = 481

 Score = 97.9 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 23/129 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET +   +             ++  +F   +         HD            + 
Sbjct: 358 AFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVI 407

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVG 113
             LK  LE+     V  N  ++ +V+     +++   R   T++ +              
Sbjct: 408 AQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDS 465

Query: 114 EALKLSSQK 122
            AL+     
Sbjct: 466 LALRFLQHS 474


>gi|304654266|gb|EFM47658.1| PsRxL467 [Phytophthora sojae]
          Length = 471

 Score = 97.5 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 81/312 (25%), Gaps = 67/312 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFA------FGFDDHPVELWD-CVHDPVMPQVL 57
             D E  + ID+   G      +  V   +        + + P    D         Q+ 
Sbjct: 89  ACDTE-VAQIDVKAVGP---VGNGVVTCLSLYSGPDVDYGNGPYVWVDNLDSAEGTLQLF 144

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------LPSALKA 111
           K+ LE+ +   V HN  F+R VL     +++       T+ +AR            +L+A
Sbjct: 145 KDFLESREYLKVWHNYSFDRHVLYNH-GINVQGLG-GDTMHMARLWNTARFQHGGYSLEA 202

Query: 112 VGEALKLSSQK-MEEGK---ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           +   L L  +K M+E     +L     KG+              E  + +  Y   D   
Sbjct: 203 LTADLLLQRKKPMKELFGIPKLRKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAES 262

Query: 168 TREIFKRLEPLSSKEQELW---------------------------------------YL 188
           T  + + L+    +                                              
Sbjct: 263 TWFLHRVLQHKLDQTFWFENAPKTNAAVNAAAAAAAVDEEPQTGSMYDFYRQYIILFGEC 322

Query: 189 DQTINDRGYCVDVALA---HTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWL 243
              I  +G  VD+                  +L  +  S               + +  L
Sbjct: 323 LTDIERKGMHVDLEYLAGVEKQALEDRARLERLVLKWASRYCDESERINLYSAAQKQQLL 382

Query: 244 FLETGLHLEDLT 255
           F       +   
Sbjct: 383 FAPYYDEKKKKQ 394


>gi|75906055|gb|ABA29401.1| DNA polymerase [Bacteriophage APSE-2]
          Length = 324

 Score = 97.5 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 54/78 (69%)

Query: 598 TENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSW 657
            ENI QA +RD+LA  M    KAGY+IVLTVHDEI+ E PDT +F+A  L  L++ N  W
Sbjct: 246 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 305

Query: 658 AKGLPLKAEGYESKRYRK 675
           A  LPL A G+E+ RYRK
Sbjct: 306 AWDLPLSANGFETYRYRK 323


>gi|47076970|dbj|BAD18421.1| unnamed protein product [Homo sapiens]
          Length = 312

 Score = 97.1 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 110/350 (31%), Gaps = 78/350 (22%)

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +      V+       + ++     +L+QE   +            +L+  
Sbjct: 20  LPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERFLITSNNQLREI 78

Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           LF +  L                          + + R    R+ + K  +  EA+N  G
Sbjct: 79  LFGKLKL-------------------------HLLSQRNSLPRTGLQKYPSTSEAVNIQG 113

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
             +  +Q                    P+  +  E+    I+                  
Sbjct: 114 ISKHPIQITT-----------------PKNFKGKEDKILTISP----------------- 139

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--TGEDLYVTTYARSFNVA 420
             R+  ++S+G   + AD + IE R+L  ++G+   LK F+    +D++ T  ++  +V 
Sbjct: 140 --RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVP 197

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             QVT   R   K +  A+ Y  G +          L +          S  ++++  ++
Sbjct: 198 VEQVTHADREQTKKVVYAVVYGAGKERLAAC-----LGVPIQEAAQFLESFLQKYKKIKD 252

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
           F R       +       +G          R+   R+     +L    E+
Sbjct: 253 FARAAIAQCHQTGCVVSIMGR---------RRPLPRIHAHDQQLRAQAER 293


>gi|156319560|ref|XP_001618134.1| hypothetical protein NEMVEDRAFT_v1g225484 [Nematostella vectensis]
 gi|156197578|gb|EDO26034.1| predicted protein [Nematostella vectensis]
          Length = 758

 Score = 97.1 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 58/438 (13%), Positives = 121/438 (27%), Gaps = 68/438 (15%)

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---------KRLEPLSSKEQELWYLD 189
            +   D    +       +  Y   D      I                 +K +  +   
Sbjct: 20  IQWKGDAEAASKSRDIEKYWAYNAKDTWHGARILVQQLRTAAPYTFANYKNKFKLTYPAL 79

Query: 190 QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
              N  G  +D+   + L      +       L         +    ++++ +++   G 
Sbjct: 80  -YCNFEGLQIDMEKRNELRTASQKQLDTARSRLHVKFADPAFNPGSWQQVEKYIYNIFGA 138

Query: 250 HLEDLTET---TCQRVLSSNKKLTPQAIQV---FNNRMRASRSAVLKLNTLVEAMNSDGR 303
               + ++   T ++ L +  +  P   ++         A ++     +           
Sbjct: 139 SKPKIGKSKSGTDEKNLLAVAEQHPLLARLTTDILAYREAQKAIGTYYD----------- 187

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
                         R+ G +    N           +        S       +Q I   
Sbjct: 188 ------------FLRFQGRLLWALN-------PFGTETERMACSASSLWCGTQVQNIPSY 228

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF-NVAPA 422
            +  ++A +G +L  AD +  E R  A+ A E   + A ET    +  T    F N+   
Sbjct: 229 AKQMLVADDGYELFEADNSQSEGRTTAYCAQEPALIAALETAGRDFYRTLGTLFFNIPYE 288

Query: 423 QVTKDQRAIG-KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           +VT   R    K +     Y  G K F +      L                 +E A   
Sbjct: 289 EVTDFFRNKVLKRIVHGTNYMMGGKTFTENIGIVVL-----------------YETAPKV 331

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
              + E   + A  ++ I    + +   + +   R+ + + E+      T   G  +   
Sbjct: 332 GIKLVEIPTKDAEMEMTIRQFAKYLLDLYHEPFPRIRKWYGEIKTEVATT---GYIVSPL 388

Query: 542 KRRDVPLVYMKKDKNNLI 559
                    + +D N L 
Sbjct: 389 GHVRKCFGNITRDHNMLR 406


>gi|213581474|ref|ZP_03363300.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 86

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYH 649
                +Q  + DI+   M+              +++ VHDE+V E    D    +  ++ 
Sbjct: 1   AINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQ 60

Query: 650 LMTSNPSWAKGLPLKAEGYESKRY 673
           LM +       +PL  E    + +
Sbjct: 61  LMENCTR--IDVPLLVEVGSGENW 82


>gi|307106798|gb|EFN55043.1| hypothetical protein CHLNCDRAFT_134898 [Chlorella variabilis]
          Length = 158

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 53/181 (29%)

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                    ++K+ + +    V+     L +  E   + G                    
Sbjct: 1   MGVTPKEAAKLKQEFLESMPGVAAF---LEKVVEDCRQTGYVETLA-------------- 43

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
                    GR     ++      L     +         K     +Q  + D++   M+
Sbjct: 44  ---------GRRCPLPNINLQSWRLRGEAER---------KAVNTPMQGSAADVMKAAMI 85

Query: 616 NATKA---------GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNP--SWAKGLPLK 664
              ++         G  IVL +HDE+V E        A+++   M   P       +PL 
Sbjct: 86  ALGESLQIGQAGEGGAAIVLMIHDELVIEV-------AAIVRECMEVVPVRKLHLSVPLA 138

Query: 665 A 665
            
Sbjct: 139 V 139


>gi|221057828|ref|XP_002261422.1| DNA polymerase I [Plasmodium knowlesi strain H]
 gi|194247427|emb|CAQ40827.1| DNA polymerase I, putative [Plasmodium knowlesi strain H]
          Length = 1245

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/373 (13%), Positives = 109/373 (29%), Gaps = 47/373 (12%)

Query: 273  AIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
             I        + +     +  L + +  +  ++      +GA  TGR S      QN+  
Sbjct: 804  IINNVKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQVGA-STGRLSCEHPNLQNIHS 862

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC------VIASEGKKLVVADLAGIE 385
              R    L    +             +     + +C         S+G+ L+  D   +E
Sbjct: 863  RFRCAISLKGEDSSSVEVGKDKLTVAEDPDREILTCEMSPHESTPSDGENLITFDYKQME 922

Query: 386  ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
              V+A+++ ++  LK  ++G+    T           QVT + R + K +   + Y    
Sbjct: 923  LFVMAYLSFDRQLLKMLQSGDVFVETAKVLFNTT---QVTSELRRMTKTVIYGILYGQTE 979

Query: 446  KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                       L ++        ++  + + +   F    +            +G   +R
Sbjct: 980  NGL-----ARSLLISEGMASNLISNFFQVFPNVYRFMEMQKILLKHMNRVYTLVGR--KR 1032

Query: 506  VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
            + +        V       ++    T   G A    K   +  + +        ++   G
Sbjct: 1033 IIE------PTVKN----KYRISMNTPIQGCAADIMKFALLSCLSIMTHGRGRQVVSNFG 1082

Query: 566  RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AGY 622
             S+       +   +   T+                            ++   K      
Sbjct: 1083 -SVHEPHNKYDVHSMGHWTQSARLLEINNVSA---------------ALLEENKPFLEAT 1126

Query: 623  DIVLTVHDEIVCE 635
             ++L VHDE++ E
Sbjct: 1127 KLILQVHDELLFE 1139


>gi|32442287|gb|AAP82214.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/464 (12%), Positives = 120/464 (25%), Gaps = 123/464 (26%)

Query: 95  CTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TLVL+R                 KL   K+                      +  ++  
Sbjct: 1   DTLVLSRLFNPNREGGHSXXXRGYKLGYHKI----------------------DFSDYLN 38

Query: 153 AWRLFGEYCKGDVTVTREIFKR--------LEPLSSKEQELWYLDQTINDRGYCVDVALA 204
             +   +YC  DV +   + K+         +   + EQ +  + +     G+  D+  A
Sbjct: 39  YSKEMLDYCVRDVQLNAVVLKKLREESRGFSKQCIAIEQGVARIMKQQEVNGFKFDLQSA 98

Query: 205 HTLNQIVDVERTKLDQELESLTYGLV---------------------------------- 230
             L   +  ++  ++ E+ +                                        
Sbjct: 99  LLLLAKLREKKQSIEDEVHNTFKPKWVDDKLVKPYIKKDGDLSKRGLTDDEYQRCLDTNN 158

Query: 231 -----------SSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQV 276
                       +    +++  +L                   ++ LS+   +     ++
Sbjct: 159 FEPFMRQTLQDFNLGSRKQIGEYLIDFGWKPERFTPTGQPIVDEKTLSAITHIHE--AKL 216

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             + +   +  + ++++ VE +  DGR+ G +   GA  TGR +        +P      
Sbjct: 217 IADFLLLQK-RIAQVDSWVEGVQEDGRVHGFVIPNGA-ITGRMTHRNPNVAQVP------ 268

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                       R+C    EG  L+  D +G+E R+LA    ++
Sbjct: 269 ------------------AVYSPYGKECRACWTVEEGNVLIGVDASGLEIRMLAHYMNDE 310

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
                                         + R   K    AL Y  G +      S  G
Sbjct: 311 EYTN---------EILNGDIHTANQKLAKLESRDKAKTFIYALMYGAGDEKL---GSVVG 358

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
            + +             + +      R   +        +  +G
Sbjct: 359 GSTSDGKR---ARQYFFDNKPTFKSLRDRVQRASALDYVEHLVG 399


>gi|32442295|gb|AAP82218.1| DNA polymerase [Podovirus SOG]
          Length = 410

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/424 (15%), Positives = 114/424 (26%), Gaps = 127/424 (29%)

Query: 95  CTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            TLVL+           +L   G  L                          +       
Sbjct: 1   DTLVLSSLACPSRAGGHSLDNWGSILGFPK--------------------GDHTDWSTYS 40

Query: 151 REAWRLFGEYCKGDVTVTR--------EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            E      EYCK DV +          E+    E     E ++ ++ Q   D G+ +D  
Sbjct: 41  PE----MREYCKRDVGLLEKVVLALDEELKGFSEKSIQLEHQVAWIIQEQMDNGWLLDQE 96

Query: 203 LAHTLNQIVDVERTKLDQELESLTY----------------------------------- 227
               L   +  ++ +L+ E+  +                                     
Sbjct: 97  AVFMLLAELKEKKMELEDEVHKVFGPIAKPVRRIVPKIKKDGCMSSVGLKYYGERWSDEI 156

Query: 228 --------GLVSSSRCLEKLKTWLFLETGLHLEDLTETT---------CQRVLSSNKKLT 270
                       +    +++   L    G      T  T            V+ ++ K  
Sbjct: 157 CGEHTRLEWQEFNIGSRQQIAERLMSA-GWKPTKFTPKTPKGGGGNPIVDDVVLADVKGI 215

Query: 271 PQAIQVFNN----RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPP 326
           P+A  + +     R       +    + ++A+  DGR+ G +   GA  TGR +      
Sbjct: 216 PEATLMADYLTVVRR------IAMAQSWLDAVEDDGRVHGEVNSNGA-VTGRMTHYSPNL 268

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
             +   S+                        I    +RSC    +G KLV  D  G+E 
Sbjct: 269 GQVTSGSK------------------------IYGPEMRSCWTVPQGHKLVGMDADGLEL 304

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           R+LA    +    +    G+    T    +   A    ++D     K    A  Y  G  
Sbjct: 305 RMLAHYMNDPEYTRMVAEGDKDAGTDAHTANQRAAGLNSRDD---AKTFIYAFLYGAGDA 361

Query: 447 AFQK 450
               
Sbjct: 362 KIGT 365


>gi|32442303|gb|AAP82222.1| DNA polymerase [Podovirus SOG]
          Length = 409

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/447 (13%), Positives = 119/447 (26%), Gaps = 95/447 (21%)

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH---- 150
            TLVL+R       +       +   +  +  + LI           L   N  +     
Sbjct: 1   DTLVLSRLVWSDLKVND----FRYIEKNPDFPRNLI--GSHSLKAWGLRLSNLKDDYDGG 54

Query: 151 -REAWRLFGEYCKGDVTVTREIFKRLE------PLSSKEQELWYLDQTINDRGYCVDVAL 203
                +   +YC+ D      ++K++            E E   + +     G+  D   
Sbjct: 55  WDTWSKDMQDYCEQDCQANWTLYKKIMSKRPSADSVRLEHEFAAVIRKQERIGFNFDTNK 114

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLV-----------------------------SSSR 234
           A+ L   +   + +L+ +L++                                    +  
Sbjct: 115 ANQLLAKLQGRQAELEAKLQTAFPPWEIKTPFTPKVNNKSRGYVKGVLTYKVKEIVFNPA 174

Query: 235 CLEKLKTWLFL----ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR---SA 287
             + +   L      +  L  +       + VL +     P+A  + N  +  ++     
Sbjct: 175 SRDHIADRLQKLRCWKPELMTDQGKPKVDEAVLKTL--DYPEAS-ILNEDLLINKRIGIL 231

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +N  ++ +   G++ G +   GA+ TGR +         P                 
Sbjct: 232 ATGVNGWLKMV-KGGKIHGRVNTNGAA-TGRCTHSKPNVAQTPS---------------- 273

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA-GEQWKLKAFETGE 406
                            R    A EG  LV ADL+G+E R LA           A     
Sbjct: 274 --------VGAAYGRECRELFHAPEGYSLVGADLSGLELRCLAHYMARFDSGSYADVVVN 325

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               T   +S  +         R   K       Y  G      +     ++ +      
Sbjct: 326 GDIHTLNQKSAGLP-------TRNNAKTFIYGFLYGAGPAKIGSI-----VDGSEKEGRK 373

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHA 493
             +   +     +     + E   ++ 
Sbjct: 374 LISKFMKATPAIKLLRTAVSEVVKKNG 400


>gi|114592896|ref|XP_001147297.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 311

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 111/350 (31%), Gaps = 78/350 (22%)

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
             L  +   +      V+       + ++     +L+QE   +            +L+  
Sbjct: 19  LPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERFLIMSNNQLREI 77

Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           LF +  L                          + + R    R+ + K  +  EA+N  G
Sbjct: 78  LFGKLKL-------------------------HLLSQRNSLPRTGLQKYPSTSEAVNIQG 112

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
             +  +Q                    P+  +  E+    I+                  
Sbjct: 113 ISKHPIQITT-----------------PKNFKGKEDKILTISP----------------- 138

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE--TGEDLYVTTYARSFNVA 420
             R+  ++S+G   + AD + IE R+LA ++G+   LK F+    +D++ T  ++  +V 
Sbjct: 139 --RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVP 196

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
             QVT   R   K +  A+ Y  G +          L +          S  ++++  ++
Sbjct: 197 VEQVTHADREQTKKVVYAVVYGAGKERLAAC-----LGVPVQEAAQFLESFLQKYKKIKD 251

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
           F R       +       +G          R+   R+     +L    E+
Sbjct: 252 FARAAIAQCHQTGCVVSIMGR---------RRPLPRIHAHDQQLRAQAER 292


>gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           QR   K +   L Y   A           LN+         +   E +     +    +
Sbjct: 61  QRRSAKAINFGLIYGMSA-----FGLARQLNIPRKEAQKYMDLYFERYPGVLQYMERTR 114


>gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli]
 gi|18104302|gb|AAL59485.1| DNA polymerase I [Escherichia coli]
 gi|18104304|gb|AAL59486.1| DNA polymerase I [Escherichia coli]
 gi|18104306|gb|AAL59487.1| DNA polymerase I [Escherichia coli]
 gi|18104308|gb|AAL59488.1| DNA polymerase I [Escherichia coli]
 gi|18104310|gb|AAL59489.1| DNA polymerase I [Escherichia coli]
 gi|18104312|gb|AAL59490.1| DNA polymerase I [Escherichia coli]
 gi|18104314|gb|AAL59491.1| DNA polymerase I [Escherichia coli]
 gi|18104316|gb|AAL59492.1| DNA polymerase I [Escherichia coli]
 gi|18104318|gb|AAL59493.1| DNA polymerase I [Escherichia coli]
 gi|18104320|gb|AAL59494.1| DNA polymerase I [Escherichia coli]
 gi|18104322|gb|AAL59495.1| DNA polymerase I [Escherichia coli]
 gi|18104324|gb|AAL59496.1| DNA polymerase I [Escherichia coli]
 gi|18104326|gb|AAL59497.1| DNA polymerase I [Escherichia coli]
 gi|18104328|gb|AAL59498.1| DNA polymerase I [Escherichia coli]
 gi|18104330|gb|AAL59499.1| DNA polymerase I [Escherichia coli]
 gi|18104332|gb|AAL59500.1| DNA polymerase I [Escherichia coli]
 gi|18104334|gb|AAL59501.1| DNA polymerase I [Escherichia coli]
 gi|18104338|gb|AAL59503.1| DNA polymerase I [Escherichia coli]
 gi|18104340|gb|AAL59504.1| DNA polymerase I [Escherichia coli]
 gi|18104342|gb|AAL59505.1| DNA polymerase I [Escherichia coli]
 gi|18104344|gb|AAL59506.1| DNA polymerase I [Escherichia coli]
 gi|18104346|gb|AAL59507.1| DNA polymerase I [Escherichia coli]
 gi|18104348|gb|AAL59508.1| DNA polymerase I [Escherichia coli]
 gi|18104350|gb|AAL59509.1| DNA polymerase I [Escherichia coli]
 gi|18104352|gb|AAL59510.1| DNA polymerase I [Escherichia coli]
 gi|18104354|gb|AAL59511.1| DNA polymerase I [Escherichia coli]
 gi|18104356|gb|AAL59512.1| DNA polymerase I [Escherichia coli]
 gi|18104358|gb|AAL59513.1| DNA polymerase I [Escherichia coli]
 gi|18104360|gb|AAL59514.1| DNA polymerase I [Escherichia coli]
 gi|18104362|gb|AAL59515.1| DNA polymerase I [Escherichia coli]
 gi|18104364|gb|AAL59516.1| DNA polymerase I [Escherichia coli]
 gi|18104366|gb|AAL59517.1| DNA polymerase I [Escherichia coli]
 gi|18104368|gb|AAL59518.1| DNA polymerase I [Escherichia coli]
 gi|18104370|gb|AAL59519.1| DNA polymerase I [Escherichia coli]
 gi|18104372|gb|AAL59520.1| DNA polymerase I [Escherichia coli]
 gi|18104374|gb|AAL59521.1| DNA polymerase I [Escherichia coli]
 gi|18104376|gb|AAL59522.1| DNA polymerase I [Escherichia coli]
 gi|18104378|gb|AAL59523.1| DNA polymerase I [Escherichia coli]
 gi|18104380|gb|AAL59524.1| DNA polymerase I [Escherichia coli]
 gi|18104382|gb|AAL59525.1| DNA polymerase I [Escherichia coli]
 gi|18104384|gb|AAL59526.1| DNA polymerase I [Escherichia coli]
 gi|18104386|gb|AAL59527.1| DNA polymerase I [Escherichia coli]
 gi|18104388|gb|AAL59528.1| DNA polymerase I [Escherichia coli]
 gi|18104390|gb|AAL59529.1| DNA polymerase I [Escherichia coli]
 gi|18104392|gb|AAL59530.1| DNA polymerase I [Escherichia coli]
 gi|18104394|gb|AAL59531.1| DNA polymerase I [Escherichia coli]
 gi|18104396|gb|AAL59532.1| DNA polymerase I [Escherichia coli]
 gi|18104398|gb|AAL59533.1| DNA polymerase I [Escherichia coli]
 gi|18104400|gb|AAL59534.1| DNA polymerase I [Escherichia coli]
 gi|18104402|gb|AAL59535.1| DNA polymerase I [Escherichia coli]
 gi|18104404|gb|AAL59536.1| DNA polymerase I [Escherichia coli]
 gi|18104406|gb|AAL59537.1| DNA polymerase I [Escherichia coli]
 gi|18104408|gb|AAL59538.1| DNA polymerase I [Escherichia coli]
 gi|18104410|gb|AAL59539.1| DNA polymerase I [Escherichia coli]
 gi|18104412|gb|AAL59540.1| DNA polymerase I [Escherichia coli]
 gi|18104414|gb|AAL59541.1| DNA polymerase I [Escherichia coli]
 gi|18104416|gb|AAL59542.1| DNA polymerase I [Escherichia coli]
 gi|18104420|gb|AAL59544.1| DNA polymerase I [Escherichia coli]
 gi|18104422|gb|AAL59545.1| DNA polymerase I [Escherichia coli]
 gi|18104424|gb|AAL59546.1| DNA polymerase I [Escherichia coli]
 gi|18104430|gb|AAL59549.1| DNA polymerase I [Escherichia coli]
 gi|18104432|gb|AAL59550.1| DNA polymerase I [Escherichia coli]
 gi|18104434|gb|AAL59551.1| DNA polymerase I [Escherichia coli]
 gi|18104436|gb|AAL59552.1| DNA polymerase I [Escherichia coli]
 gi|18104438|gb|AAL59553.1| DNA polymerase I [Escherichia coli]
 gi|18104440|gb|AAL59554.1| DNA polymerase I [Escherichia coli]
 gi|18104442|gb|AAL59555.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           QR   K +   L Y   A           LN+         +   E +     +    +
Sbjct: 61  QRRSAKAINFGLIYGMSA-----FGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114


>gi|197935871|ref|YP_002213707.1| DNA polymerase [Ralstonia phage RSB1]
 gi|197927034|dbj|BAG70376.1| DNA polymerase [Ralstonia phage RSB1]
          Length = 815

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/587 (10%), Positives = 145/587 (24%), Gaps = 106/587 (18%)

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE--YCKGDVTVTRE 170
            E        +       +RF K         + +          GE  Y + D T    
Sbjct: 256 AELAGFIPADLPFDFNWNSRFHKSALIFGGKVKYEARTAIVDEETGEQVYAQKDAT---- 311

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
               L   ++ + + +            +               + K + + + +    +
Sbjct: 312 -HVLLVDGTTMDLDAYLALVVEKTAPEAI----------RFAGGKNKGEIKTKKVKVNDL 360

Query: 231 SSSRCLEKLKTWLFLETGLHLED------LTETTCQRVLSSN-KKLTPQAIQVFNNRMRA 283
              +   +   + F                  +    V+ +   +     ++V    +  
Sbjct: 361 DKPKSRMEDHFYTFPGFTKPDPSWEGATPGVYSCDSDVMEALTARQDVPFVKVLTGVVAL 420

Query: 284 SRSAVLKL----------NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
           ++                  ++  ++ +  +  TL     + T R S      QN+P+  
Sbjct: 421 TKDLGTYFITHDEKTGHDKGMLTLVHPNDIVHHTLNMCR-TVTARLSSSDPNLQNIPKGQ 479

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
           +S  +                                    K++ +D + +E  V A + 
Sbjct: 480 KSEAKTMFESRFGADG-------------------------KIIQSDFSSLEVYVQAMLT 514

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
             +  +     G D++    A        +V                          +  
Sbjct: 515 LCKQLIADLAAGIDMHCMRLAAKEKREYDEVLM------------------------LCK 550

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
              + ++                 + +F R         A          + +  A   +
Sbjct: 551 KGKVGVDLTQEERDEWDYKRTGAKSFSFQRAYGAGVAAIAAGTGIPLEEVQALADAEDAR 610

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
           +  + E +    +     I   +           +  +K        + P G+   YR+ 
Sbjct: 611 YPEIGEYF----EMKADEIRETRTPTLDIVEHPEIKGLKCQLGKGYSVTPDGKRYSYRES 666

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-MNAT--------KAGYDI 624
            + +  +     +     T   ++    VQ    +++   M +           K    +
Sbjct: 667 PSPKYMIERGRPRTGFVPT---QIKNYEVQGTGGEVMKAAMWLAVRAFYYYKNFKGLALL 723

Query: 625 VLTVHDEIVCETPDT-DEFNASMLYHLMTSN---PSWAK--GLPLKA 665
           V TVHD    +   T     A +L+  M        W     LP+  
Sbjct: 724 VNTVHDAQYVDAHKTVAVKAAGLLHACMVEASTLIEWWFKWELPIGV 770



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 71/285 (24%), Gaps = 43/285 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--------LWDCVHDPV 52
           M     D ET +           +  +  ++   +   D  VE                 
Sbjct: 1   MKYTVFDLETTTHAAYKHK-ANPFIPENHIVAVGWRHGDTDVEARLADRADYLYAAPGCS 59

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTV------------LKACFNLDIPIHRWICTLVLA 100
            P      L      +V HN  F+               L+A  +  +       T ++ 
Sbjct: 60  QPSSWFTDLLKHGKWVVGHNIKFDLLYALANENSYPEQNLEAWMDWVVKGGLPWDTQIVE 119

Query: 101 RSNG--LPSA----LKAVGEALKLSSQKMEEGKEL----IARFCKGET--HECLYDRNKP 148
                  PS+    L  V       + K++E K +    I  +        + L  R  P
Sbjct: 120 YLLRGMEPSSTMLPLDEVAVHYG-GNTKVDEVKAMWEAGIDTWDIPRELLIDYLVGRTVP 178

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPL------SSKEQELWYLDQTINDRGYCVDVA 202
           +       F     G+  +      +                 +     +   G  V+ A
Sbjct: 179 SEDGEGEDFELGDIGNTELVFRAQLKRAKEQGQLRSIILNMGAYVATIEMERNGMHVNKA 238

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLV---SSSRCLEKLKTWLF 244
               L + +  +  ++  EL       +    +          +F
Sbjct: 239 KGLKLAEKMAAKLIEMSAELAGFIPADLPFDFNWNSRFHKSALIF 283


>gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi]
 gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi]
          Length = 1429

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 66/203 (32%), Gaps = 29/203 (14%)

Query: 11   RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVTI 68
               +D+   G+  + E   + L     +++PV ++D  +  +  +   L++ L + ++  
Sbjct: 1244 YCGLDMETTGLEVFGE--KIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1301

Query: 69   VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
            +  N  F+   L      +  I     T + ++       +             + E K 
Sbjct: 1302 IIQNGKFDTKFLLYN---NFNITNIFDTYIASKLLDKNKNM------YGFKLNNIVE-KY 1351

Query: 129  LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--------- 179
            L     K + +    +    N++        Y   D +   +++K+L             
Sbjct: 1352 LSVYLDKQQQNSVWNNSLLNNNQ------LFYAARDSSCLLKLYKKLSEQIVAENMQIVN 1405

Query: 180  SKEQELWYLDQTINDRGYCVDVA 202
              E +       +   G  VD+ 
Sbjct: 1406 DIENKCILPICDMELNGITVDLE 1428


>gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            IA E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +
Sbjct: 1   FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           QR   K +   L Y   A           LN+         +   E +     +    +
Sbjct: 61  QRRSAKAINFGLIYGMSA-----FGLARQLNIPRKEAQKYMDLYFERYPGVPEYMERTR 114


>gi|256824902|ref|YP_003148862.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Kytococcus sedentarius DSM 20547]
 gi|256688295|gb|ACV06097.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Kytococcus sedentarius DSM 20547]
          Length = 587

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 70/501 (13%), Positives = 113/501 (22%), Gaps = 114/501 (22%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCL 236
            + Q +N  G   D ++ H                      L   +         +    
Sbjct: 181 LIAQELNHAGVPFDASVHHAQLTTALGEADRHGGRPARMAALVARIRETLDAPGLNPDSA 240

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
             L   L    GL +    +          + L    I+        +R       + + 
Sbjct: 241 PTLVAAL-RRAGLEVTSTRKW-------ELRGLDHPVIEPLLEYKALARLYTANGWSWMR 292

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
               DGR R      G   TGRW+        LP                          
Sbjct: 293 HWVRDGRFRPD-WVAGGVVTGRWASRGGGALQLP-------------------------- 325

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +RS V A  G +LVVAD A +E RVLA M+ +    +A   G+          
Sbjct: 326 -----QQIRSAVRAEPGWRLVVADAAQLEPRVLAAMSQDGAMARAAAAGDLYQGL----- 375

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
                 +   D RA  KV  L   Y   +                             + 
Sbjct: 376 ----VDEGVVDTRAHAKVAMLGAMYGATSG----------------EAGALMARLRRAYP 415

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            A  +                ++G         WR+   + +    +   A E+   +  
Sbjct: 416 RAMGWVDAAAAAGERGERVSTWLGRTSPAPPAFWREA--QAAAQHPDASPAAERRAHS-- 471

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
           A     R     V         +  +   R     D+      +               +
Sbjct: 472 AAREWGRFTRNFVVQGTAAEWALCWMGFLRR-GLDDLHGP-GGMREGDGGPGGLTASRPE 529

Query: 597 LTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPS 656
           L   +                           HDE++   P+      +           
Sbjct: 530 LVYFL---------------------------HDEVIVHAPEEFADEVAECVREAARRAG 562

Query: 657 WAK------GLPLKAEGYESK 671
                      PL     ES 
Sbjct: 563 VLLFPGSPVDFPLSVAVVESY 583


>gi|71416914|ref|XP_810416.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL
            Brener]
 gi|70874942|gb|EAN88565.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
            cruzi]
          Length = 1627

 Score = 95.2 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/421 (12%), Positives = 112/421 (26%), Gaps = 98/421 (23%)

Query: 274  IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRP 332
              +   R    +  + +   L  A+  + + R   +     + TGR S      QN+PR 
Sbjct: 1277 KALQQLRFTEKKMQLFEEGALFRAVLPECKDRVHGELCHTVTATGRLSSQSPNLQNIPR- 1335

Query: 333  SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK---LVVADLAGIEARVL 389
                                         + +R  +++  G++   ++ AD + +E  VL
Sbjct: 1336 ----------------------------EEDLRRLIVSRFGRREGRMIEADYSQLEVVVL 1367

Query: 390  AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            A ++ +   L+      D +    +                                   
Sbjct: 1368 AALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN-------------------------- 1401

Query: 450  KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                   +                +     +F R         A          ER+  A
Sbjct: 1402 -------VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATTTGLTEHEVERLISA 1454

Query: 510  WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
              Q +  +S  +    +     +E G   + R R      +    +  ++L  P    L 
Sbjct: 1455 EEQHYKDLSRYY----RLVMDCVEAGADRLLRLRTLDAATWSPAMRRMILLTEP----LH 1506

Query: 570  YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---------TKA 620
            Y  V     +     ++         +L    VQ ++ +I+                   
Sbjct: 1507 YFVVPTGSKFDFAKDKKSI------PRLKNYPVQGLAGEIVQIMCGKIVRRFYEKRNYDG 1560

Query: 621  GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--------PSWAKGLPLKAEGYESK 671
               +V TVHD +  +   +        +  +M+S         P     +P  A+ +   
Sbjct: 1561 RAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNADVHIGP 1620

Query: 672  R 672
             
Sbjct: 1621 S 1621


>gi|71414776|ref|XP_809478.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL
            Brener]
 gi|70873866|gb|EAN87627.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
            cruzi]
          Length = 1499

 Score = 95.2 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/421 (12%), Positives = 112/421 (26%), Gaps = 98/421 (23%)

Query: 274  IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRP 332
              +   R    +  + +   L  A+  + + R   +     + TGR S      QN+PR 
Sbjct: 1149 KALQQLRFTEKKMQLFEEGALFRAVLPECKDRVHGELCHTVTATGRLSSQSPNLQNIPR- 1207

Query: 333  SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK---LVVADLAGIEARVL 389
                                         + +R  +++  G++   ++ AD + +E  VL
Sbjct: 1208 ----------------------------EEDLRRLIVSRFGRREGRMIEADYSQLEVVVL 1239

Query: 390  AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
            A ++ +   L+      D +    +                                   
Sbjct: 1240 AALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN-------------------------- 1273

Query: 450  KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                   +                +     +F R         A          ER+  A
Sbjct: 1274 -------VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATTTGLTEHEVERLISA 1326

Query: 510  WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
              Q +  +S  +    +     +E G   + R R      +    +  ++L  P    L 
Sbjct: 1327 EEQHYKDLSRYY----RLVMDCVEAGADRLLRLRTLDAATWSPAMRRMILLTEP----LH 1378

Query: 570  YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA---------TKA 620
            Y  V     +     ++         +L    VQ ++ +I+                   
Sbjct: 1379 YFVVPTGSKFDFAKDKKSI------PRLKNYPVQGLAGEIVQIMCGKIVRRFYEKRNYDG 1432

Query: 621  GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--------PSWAKGLPLKAEGYESK 671
               +V TVHD +  +   +        +  +M+S         P     +P  A+ +   
Sbjct: 1433 RAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNADVHIGP 1492

Query: 672  R 672
             
Sbjct: 1493 S 1493


>gi|157168417|ref|YP_001456774.1| gp44, DNA polymerase I [Corynebacterium phage BFK20]
 gi|74268849|emb|CAJ29727.1| gp44, DNA polymerase I [Corynebacterium phage BFK20]
          Length = 634

 Score = 94.8 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 72/538 (13%), Positives = 130/538 (24%), Gaps = 105/538 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMPQVLKE 59
           T+ +D E          G+        +      +                         
Sbjct: 62  TVAVDIE--------AAGLAH--ASFDMRCITLSWYTGTGSEAMTVLIDPRDPHEASFAR 111

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTLVLARSNGL----PSALKAVGE 114
            +  T   +V HN  ++   L     + +  I +   T+VLAR           L+++  
Sbjct: 112 RILTTAPALVFHNGAYDVPPLVQHGVMTLDHIVKVWDTIVLARMAYPDKDTSKGLESLAG 171

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE---- 170
                      G    +    G      +     +       +      D  +T      
Sbjct: 172 RSDTLGMPPSPGSIKNSYLLAGYKKSDGFM----HADIDMLPYRIGAMSDTPITLRMLDK 227

Query: 171 IFKRLEPLS--------------SKEQELWYLDQTINDR-------GYCVDVALAHTLNQ 209
           ++                          L   +Q  N         G  VD    HT ++
Sbjct: 228 LYNNCVQWLTSSTFEGETVPRTAQDAHRLIEREQITNRAMLRRSAIGLRVDREYLHTYSE 287

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLS 264
               ER      +E        +      +  +L  +  +               ++   
Sbjct: 288 QTLAEREHAANLIEKTIARE--AVGNGLHVVNYLDTQGLIPASWPRTPTGRLKADKQAFE 345

Query: 265 SNKKLTPQAIQVFNNRMRASRSAV-LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
           S     P       +R  A    +   L          GR+   +  LGAS TGR +   
Sbjct: 346 SL--DHPLID---AHRKVADTDHILDYLGKTDAMAQITGRVHPQVGILGASATGRMAYSQ 400

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              Q  P  +R     D+                              EG   V  D + 
Sbjct: 401 PELQQFPSEARKIILWDK-----------------------------PEGA--VSIDWSS 429

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E  ++A  A +   L  F                         +R   KV+ LA  Y  
Sbjct: 430 VEPVIMANCARDTEFLAGFNHHGADLYAPIT---------SQGIERKTAKVVMLAAMYGQ 480

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
           G+++  +      L ++            E     + F + +Q    +H       G 
Sbjct: 481 GSRSLAE-----RLGVSVDEAKSLRKKVFEPMPRTDAFMKAIQATSEQHGRIMTADGR 533


>gi|32442291|gb|AAP82216.1| DNA polymerase [Podovirus SOG]
          Length = 401

 Score = 94.8 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 105/396 (26%), Gaps = 80/396 (20%)

Query: 95  CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKE-----LIARFCKGETHE----- 140
            TL+L+R          +LK  G  +  + Q+     +     ++   C           
Sbjct: 1   DTLILSRLFRPIRESGHSLKTWGYRVGFAKQEQPLDFDEYTPQMLEYCCNDVRLNELVYL 60

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVT------------VTREIFKRLEPLSSKEQELWY- 187
            L         ++  L     K                 T  + K  + +     E+   
Sbjct: 61  SLLKEQAGFSPQSIALEHAVAKIISDQENNGFAFNEKQATMLLAKLKDKMYEVTDEVQRT 120

Query: 188 -----LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL--VSSSRCLEKLK 240
                +D  +    +  D  L+ +     + +     ++ +          +    +++ 
Sbjct: 121 FKPRMVDVKLVVPKFKKDGELSKSGLTTEEYDTCMTQKKYQPFMRQELQEFNLGSRKQIG 180

Query: 241 TWLFLETGLH---LEDLTETTCQRVLSSNKKLT---PQAIQVFNNRMRASRSAVLKLNTL 294
            +L                   +  L     +    P A  +   +  A       + + 
Sbjct: 181 EYLMDFGWEPKRFTPTGQPIVDEGTLKKITHIHEAKPIADFLLYQKRIAQ------IQSW 234

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G++   G + TGR S        +P                        
Sbjct: 235 LDALEEDGRVHGSVIPNG-TITGRMSHNHPNVAQVP------------------------ 269

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                     R+C    EG  LV  D +G+E R+LA    ++  +               
Sbjct: 270 AVYSPFGVECRACWTVEEGNVLVGVDASGLELRMLAHYMNDEEYIN---------EVVNG 320

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQK 450
                       + R   K    AL Y  G +    
Sbjct: 321 DIHTTNQKLAGLESRDTAKTFIYALVYGAGDEKIGS 356


>gi|58257968|gb|AAW69379.1| DNA polymerase I [Hydrogenobacter hydrogenophilus]
          Length = 169

 Score = 94.4 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 2/164 (1%)

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
              LQ I   +RS   A EGK LV++D + IE R+ +   G++  ++AF+ G DL+  T 
Sbjct: 1   DPNLQNIPRELRSVFKAREGKILVISDFSQIELRIASEYVGDEKMIRAFKEGRDLHRYTA 60

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +        +V+K++R + K +   L Y   AK   + A + G++L+        +   E
Sbjct: 61  SILLGKREEEVSKEERQLAKAVNFGLIYGISAKGLSEYAKSYGIDLSVDEAQKIRDKFFE 120

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK--HS 515
            +   +N+   ++    E      +     + V   +     + 
Sbjct: 121 YFVSFKNWHEKVKRELKEFKESRGYTLLGRKYVAHTFPDAVNYP 164


>gi|154412700|ref|XP_001579382.1| DNA polymerase I family protein [Trichomonas vaginalis G3]
 gi|121913588|gb|EAY18396.1| DNA polymerase I family protein [Trichomonas vaginalis G3]
          Length = 709

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 93/309 (30%), Gaps = 56/309 (18%)

Query: 166 TVTREIFKRL--EPLSSKEQELWYLDQTIND-----RGYCVDVALAHTLNQIVDVERTKL 218
             T E+F++   +    K  +   +           + + +D+         ++ E  ++
Sbjct: 286 DKTLELFEKFTKDDKLYKWYKDIEMRHLRFMGTIHQKSFKLDLENMKFERYKIESELKEI 345

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TE---------------TTCQ 260
             ++  L+     +     ++   LF +  L        T+                T  
Sbjct: 346 SDKIYGLSGCK-FNILSPFEVSEVLFEKMKLKSNKFSAQTKTIDSRHKNIKHREFAPTNS 404

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
            VL       P    +   R   S+     L +  +  +S+G L   +  L ++ TGR S
Sbjct: 405 LVLDDI--NHPIVELIKKFR-SLSKLVSNWL-SFDQKSDSEGILHPWILVL-STATGRIS 459

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                 QN+P                              S  +R   +    K ++  D
Sbjct: 460 SVFPNLQNIP------------------------SFNDEQSLNIRKFFLPPTKKTMISVD 495

Query: 381 LAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
            + +E R+LA ++ ++         +    +  A+        VT+D R   K    A  
Sbjct: 496 YSQLELRILAHLSDDKKLKDLCNVDQGDIHSMIAKMI-FNKNNVTEDMRKEAKTNIYATI 554

Query: 441 YQGGAKAFQ 449
           Y    +   
Sbjct: 555 YGKKVENMS 563



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
           I +  R      + + +N   +   SG+     ++   +    +   +  R         
Sbjct: 570 IFQGIRSFITNTVIETQNKGFIKTFSGKYRFLPNIRCQKV---SDKMRDERIS------V 620

Query: 599 ENIVQAVSRDILAEGMMNATKA-GYDIVLTVHDEIVCETPDT 639
             I+Q  + D +   ++N  K      ++ +HDE + ET + 
Sbjct: 621 NTIIQGTAADFVKFALINVIKQTNLIPIIQIHDEWIFETDEE 662


>gi|332142369|ref|YP_004428107.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552391|gb|AEA99109.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 310

 Score = 94.0 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 122/363 (33%), Gaps = 93/363 (25%)

Query: 277 FNNRMRASRSA--VLKLNTLVEAMN----SDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                  ++S   V +   LV+A+N    +D +L   L + GA             QNL 
Sbjct: 11  IFEARERAKSNQAVSRAKKLVQAVNGRPNNDNKLVVPLVYYGAHTGRYGGNEGLNLQNLQ 70

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           R S                               R  + A  G+ + VAD + IEAR++A
Sbjct: 71  RGSEH-----------------------------RKALTAPFGQLVYVADSSNIEARIVA 101

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD-QRAIGKVMELALGYQGGAKAFQ 449
           W A E   L  F+ G D Y T     +     + T   +R +GKV  L L Y  GA+ F 
Sbjct: 102 WFAQETALLNQFKNGIDTYATLATDIYGFPVTKQTHQLERNVGKVARLGLQYGMGARTFH 161

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           +   +  + +                                      +     E++ K 
Sbjct: 162 RTMESGPMGIPPMP----------------------------------WAFPEIEKIVKT 187

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
           +R+ H  + + W   +Q  ++ I        R                  L LP+G  L 
Sbjct: 188 YRRTHPMIKKCWEIGNQIIQKMIRKDTLETWRCLTVRHQC----------LELPNGMYLQ 237

Query: 570 YRDVGNNRSYLNTT-------------TRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
           + ++ N                     +++L  +  YGGKL ENI QA++   + E M++
Sbjct: 238 FPNLRNKEIQTAQGPQYEVVYDSYDYKSKKLVEKRLYGGKLLENIAQALAGLAMKEMMLD 297

Query: 617 ATK 619
             +
Sbjct: 298 IQE 300


>gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1042

 Score = 94.0 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 77/302 (25%), Gaps = 69/302 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVE-LWD-CVHDPVMPQV 56
             D E  + ID+             +  F+        F D       D       + +V
Sbjct: 635 ACDTE-VTEIDVKNESP---VGHGRITCFSIYCGPTADFGDGKNRLWIDVLDGGEDVLKV 690

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI-CTLVLARSNGL-------PSA 108
            K   E+  +  V HN  F++ VL       I    +   T+ LAR             +
Sbjct: 691 FKRYFESPSIKKVWHNYSFDKHVLGRH---GIHPQGFHADTIHLARLYDSARRGAKGGYS 747

Query: 109 LKAVGEALKLSSQKM--------------EEGKELIARFCKGETHECLYDRNKPN----- 149
           L+ +    K+    +              +  KEL  +    +       +  P      
Sbjct: 748 LEVLSADEKVMDGYIRHSTEVDESVLAGKKSMKELFGKANLKKDGTPGKIKTIPPVHELQ 807

Query: 150 -HREAWRLFGEYCKGDVTVTREIFKRLEPLS---------------------SKEQELWY 187
              E    +  Y   D   T  +F  L+                           +    
Sbjct: 808 RDEELRDAWIYYSTFDAVCTWRLFLSLQQKLSSTPWNVADLKKKGSMYDFYEKYWRPFGE 867

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV-----SSSRCLEKLKTW 242
           +   +   G  VD     T+ ++   ++                     +     +++ +
Sbjct: 868 VLVQMEADGMLVDCNHLATVEKVAKAQQEISVSRFRKWAAKYCADAAQMNVGSDAQIRQF 927

Query: 243 LF 244
           L+
Sbjct: 928 LY 929


>gi|218296583|ref|ZP_03497311.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
 gi|218243125|gb|EED09657.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23]
          Length = 536

 Score = 94.0 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 63/211 (29%), Gaps = 35/211 (16%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFC 134
           + +VL     L +P       ++LA      +   + V                      
Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYGGE------------WTE 400

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
           +      L +R        W                +          E+ L  +   +  
Sbjct: 401 EAGERAALSERLF---ANLWERL--------EGEERLLWLYR---EVERPLSAVLAHMEA 446

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---- 250
            G  +DVA    L+  V  E  +L+ E+  L      +    ++L+  LF E GL     
Sbjct: 447 TGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHP-FNLNSRDQLERVLFDELGLPAIGK 505

Query: 251 LEDLTE-TTCQRVLSSNKKLTPQAIQVFNNR 280
            E   + +T   VL + ++  P   ++   R
Sbjct: 506 TEKTGKRSTSAAVLEALREAHPIVEKILQYR 536


>gi|297192970|ref|ZP_06910368.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151581|gb|EFH31247.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486]
          Length = 406

 Score = 94.0 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 63/410 (15%), Positives = 106/410 (25%), Gaps = 117/410 (28%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F + G+ +        + +        P    +     +  R       + ++    DGR
Sbjct: 78  FAQAGIKVRSTRRWELEEI------DHPAVKPLIEY-KKLYRIWTAHGWSWLQDWVRDGR 130

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G S +GRW+        +P+                                
Sbjct: 131 FRPGY-LPGGSVSGRWTTNGGGALQIPK-------------------------------V 158

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A +G +LVVAD   +E RVLA ++ +   ++      DLY +   R+F+     
Sbjct: 159 IRRAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEVAGHDGDLYTSLSDRAFSGDRD- 217

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                    K+  L   Y            T+G  L   A L                  
Sbjct: 218 -------HAKIALLGAIY----------GQTSGDGLKNLAAL------------------ 242

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                      R++  R       +  A +   E         R
Sbjct: 243 ---------------------------RRRFPRAVAY---VDDAAKAGEEGRLVRTWLGR 272

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                     D    I   P                  T     T     G      +VQ
Sbjct: 273 TSPRAAGAGDDDEAGIPQEPV--------EAAPADGEFTPGYASTNARARGRFTRNFVVQ 324

Query: 604 AVSRD--ILAEGMMNATKAGYD--IVLTVHDEIVCETPDTDEFNASMLYH 649
             + D  +L    +    AG    +V   HDE++   P  +  + +    
Sbjct: 325 GSAADWALLMLAALRQATAGMRAELVFFQHDEVIVHCPAEEARDVAEAIR 374


>gi|148747811|ref|YP_001285777.1| DNA polymerase [Phormidium phage Pf-WMP3]
 gi|146230044|gb|ABQ12452.1| DNA polymerase [Phormidium phage Pf-WMP3]
          Length = 363

 Score = 93.6 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 108/376 (28%), Gaps = 77/376 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM---PQVLKEA 60
           + +D E     DL+     +Y  D  V L    F               +    + +++ 
Sbjct: 10  VVLDIE---SDDLS----AQYDVDTRVYLIGVQFLADYGLY---AAGDYVYGSLEEMRDL 59

Query: 61  L----ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL----PSALKAV 112
                 +TDVT V HN+ F+   L     + I   R+ CT V A +        ++L ++
Sbjct: 60  CVSLANDTDVTFVIHNASFDVPAL-RLRGIPIK--RYFCTQVAAHTWHPKSSEENSLDSL 116

Query: 113 -GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            G  L L ++      +L  +    E        ++        +F  Y   D+  T ++
Sbjct: 117 TGMKLDLRAELEVYRPDLKGKPKGYEYRLYDDKSHRGWSTVN-DIFHSYLVSDLQATGKL 175

Query: 172 FKRLEPL-----------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +  LE                 Q    L       G  VDV     +   +   R +   
Sbjct: 176 YTTLEDNFSSDERALRCLLDINQPYVELIIEFEQ-GSWVDVDRVDEVQSKLQTLRDEAWS 234

Query: 221 EL--------------------------ESLTYGLVSSSRCLEKLKTWLFLETGLHLED- 253
           E+                                +  +    +++   L    G      
Sbjct: 235 EITTHIRYDVTEIKRYKNGYKKRNGVVTYDHCPLVDFNPGSSDQVAAALTYLYGWEPTKL 294

Query: 254 ----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR-LRGTL 308
                  +T   VL       P    +     + ++     +  +    N DG  LR + 
Sbjct: 295 SDKTGKPSTSSEVLEEL--NYPLVSSLVKY-QKMAKLM-QFIPQIQ--ANLDGNILRPSY 348

Query: 309 QFLGASRTGRWSGCVF 324
               A+RT R S    
Sbjct: 349 NQS-ATRTTRLSSSKP 363


>gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli]
 gi|18104428|gb|AAL59548.1| DNA polymerase I [Escherichia coli]
          Length = 114

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
            I  E   +V AD + IE R++A ++ ++  L AF  G+D++  T A  F +    VT +
Sbjct: 1   FIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
           QR   K +   L Y   A           LN+         +   E +     +    +
Sbjct: 61  QRRSAKAINFGLIYGMSA-----FGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114


>gi|322489694|emb|CBZ24954.1| mitochondrial DNA polymerase I protein C,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1538

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/418 (12%), Positives = 115/418 (27%), Gaps = 97/418 (23%)

Query: 276  VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334
            +   R    +  + +   L  A+  +   R   +     + TGR S      QN+P+   
Sbjct: 1191 LQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPK--- 1247

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWM 392
                                       + +R  +++  G +  ++ AD + +E  VLA +
Sbjct: 1248 --------------------------EEDLRRLIVSRFGAQGMMIEADYSQLEVVVLAAL 1281

Query: 393  AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
              +   ++      D +    +         V +                          
Sbjct: 1282 CRDPRMMQELRDNVDFHCLRVSLMTKEPYEDVMR-------------------------- 1315

Query: 453  STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                                 +     +F R         +          +R+  A   
Sbjct: 1316 -------KAKVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEH 1368

Query: 513  KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
             +  +S+ ++ + +     +E G   + R R     ++    +  ++L  P    + Y  
Sbjct: 1369 HYKELSKYYSLVTR----CVEAGADRLLRLRTLDTSLWNANIRRVVMLTEP----MYYFV 1420

Query: 573  VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA------TKAGYD 623
            V     +  T  R+         +L    VQ ++ +   I+   ++              
Sbjct: 1421 VPTGSKFDFTRDRKSV------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAF 1474

Query: 624  IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672
            +V TVHD +  +          + L  +M           P     +P KAE +    
Sbjct: 1475 LVNTVHDCVWVDAHKCVADEVRADLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGPS 1532


>gi|325964629|ref|YP_004242535.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470716|gb|ADX74401.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 572

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/468 (13%), Positives = 114/468 (24%), Gaps = 144/468 (30%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
            +   L+QEL  L      +    + L   L    G+ ++   +          +   P 
Sbjct: 220 AKLEVLNQELRRLLNSPTLNPDSPQDLMRALH-RNGIEVKTTRKW------ELRESSHPA 272

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +     + SR       + ++A  + GR R     +G   +GRW+        +PR 
Sbjct: 273 IAPLLAY-KQLSRLHTANGWSWLDAWVAGGRFRPEY-VVGGVVSGRWASRGGGALQIPRN 330

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R  V A  G KL+VAD + +E RVL  +
Sbjct: 331 -------------------------------IRGAVHADPGHKLIVADASQLEPRVLVAL 359

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A +    +A    +                      RA  KV  L   Y   +       
Sbjct: 360 AQDSSMAEAARDQDLYAGIAAKGFGG---------DRAKAKVALLGAMYGATSG------ 404

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                                 +  A ++                 +G +     + W Q
Sbjct: 405 ----------EAGRLMPQLARTYPRAVDYVEQAARAGESGGTVTTRLGRSSPPPSERWFQ 454

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                        ++     E  +A    + R                            
Sbjct: 455 S-----------QRSA-SAEEQRRAESIARSRGRFTRNF--------------------- 481

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM-----------NATKAG 621
                                       +VQ  + D  A  +            +     
Sbjct: 482 ----------------------------VVQGSAADWAACWLAELRRRLRALRKDLH-LN 512

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL---PLKAE 666
            ++VL +HDE++   P         +  +       AK L   P+  E
Sbjct: 513 AELVLFLHDEVMVHAPVEAVDAC--ITAI-EDAARAAKELLFGPIPVE 557


>gi|322504483|emb|CAM37559.2| putative mitochondrial DNA polymerase I protein C [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1628

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/418 (11%), Positives = 113/418 (27%), Gaps = 97/418 (23%)

Query: 276  VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334
            +   R    +  + +   L  A+  +   R   +     + TGR S      QN+P+   
Sbjct: 1281 LQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPK--- 1337

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWM 392
                                       + +R  +++  G +  ++ AD + +E  VLA +
Sbjct: 1338 --------------------------EEDLRRLIVSRFGAQGMMIEADYSQLEVVVLAAL 1371

Query: 393  AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
              +   ++      D +    +                                      
Sbjct: 1372 CRDPRMMQELRDNVDFHCLRVSLMTKEPYED----------------------------- 1402

Query: 453  STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                +                +     +F R         +          +R+  A   
Sbjct: 1403 ----VVRKAKVKKDPQYIQLRQQAKVFSFQRQYGAGISTISTTTGLTEQEVDRLIVAEEH 1458

Query: 513  KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
             +  +S+ ++ + +     +E G   + R R      +    +  ++L  P    + Y  
Sbjct: 1459 HYKELSKYYSLVTR----CVEAGADRLLRLRTLDTSCWNTNIRRVVMLTEP----MYYFV 1510

Query: 573  VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA------TKAGYD 623
            V     +  T  R+         +L    VQ ++ +   I+   ++              
Sbjct: 1511 VPTGSKFDFTRDRKSV------PRLKNYPVQGLAGEIVQIMCGAIVREFYQKRNYGEKAF 1564

Query: 624  IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672
            +V TVHD +  +   +      + L  +M           P     +P K E +    
Sbjct: 1565 LVNTVHDCVWVDAHKSVADEVRADLARIMGHTQETIATLWPDMKLDVPFKVEIHSGSS 1622


>gi|154334253|ref|XP_001563378.1| mitochondrial DNA polymerase I protein C [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1628

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/418 (11%), Positives = 113/418 (27%), Gaps = 97/418 (23%)

Query: 276  VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334
            +   R    +  + +   L  A+  +   R   +     + TGR S      QN+P+   
Sbjct: 1281 LQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPK--- 1337

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWM 392
                                       + +R  +++  G +  ++ AD + +E  VLA +
Sbjct: 1338 --------------------------EEDLRRLIVSRFGAQGMMIEADYSQLEVVVLAAL 1371

Query: 393  AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
              +   ++      D +    +                                      
Sbjct: 1372 CRDPRMMQELRDNVDFHCLRVSLMTKEPYED----------------------------- 1402

Query: 453  STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                +                +     +F R         +          +R+  A   
Sbjct: 1403 ----VVRKAKVKKDPQYIQLRQQAKVFSFQRQYGAGISTISTTTGLTEQEVDRLIVAEEH 1458

Query: 513  KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
             +  +S+ ++ + +     +E G   + R R      +    +  ++L  P    + Y  
Sbjct: 1459 HYKELSKYYSLVTR----CVEAGADRLLRLRTLDTSCWNTNIRRVVMLTEP----MYYFV 1510

Query: 573  VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA------TKAGYD 623
            V     +  T  R+         +L    VQ ++ +   I+   ++              
Sbjct: 1511 VPTGSKFDFTRDRKSV------PRLKNYPVQGLAGEIVQIMCGAIVREFYQKRNYGEKAF 1564

Query: 624  IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672
            +V TVHD +  +   +      + L  +M           P     +P K E +    
Sbjct: 1565 LVNTVHDCVWVDAHKSVADEVRADLARIMGHTQETIATLWPDMKLDVPFKVEIHSGSS 1622


>gi|194383398|dbj|BAG64670.1| unnamed protein product [Homo sapiens]
          Length = 611

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 80/284 (28%), Gaps = 47/284 (16%)

Query: 67  TIVAHNSY-FERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPS---ALKAVGEALK 117
            ++  N+  F R VL   F  D               + A          + + + E   
Sbjct: 315 PVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEKY- 372

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              +K    K                 R      E  +           +T ++  +L+ 
Sbjct: 373 --CEKSITVKVNSTYGNSSRNIVNQNVR------ENLKTLYR-------LTMDLCSKLKD 417

Query: 178 LSSKEQ------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
               +        L  +   +      V+       + ++     +L+QE   +      
Sbjct: 418 YGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAG-ERF 476

Query: 232 SSRCLEKLKTWLFLETGL---------HLEDLTE--TTCQRVLSSNKKLTPQAIQVFNNR 280
                 +L+  LF +  L             L +  +T + VL++ + L P    +   R
Sbjct: 477 LITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYR 536

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
               +     ++ L+ A    G +  T    G + TGR S    
Sbjct: 537 Q-VHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHP 577


>gi|322497680|emb|CBZ32756.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1548

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/418 (11%), Positives = 113/418 (27%), Gaps = 97/418 (23%)

Query: 276  VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334
            +   R    +  + +   L  A+  +   R   +     + TGR S      QN+P+   
Sbjct: 1201 LQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPK--- 1257

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWM 392
                                       + +R  +++  G +  ++ AD + +E  VLA +
Sbjct: 1258 --------------------------EEDLRRLIVSRFGAQGMMIEADYSQLEVVVLAAL 1291

Query: 393  AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
              +   ++      D +    +                                      
Sbjct: 1292 CRDPRMMQELRDNVDFHCLRVSLMTKEPYED----------------------------- 1322

Query: 453  STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                +                +     +F R         +          +R+  A   
Sbjct: 1323 ----VVRKAKVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEH 1378

Query: 513  KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
             +  + + ++ + +     +E G   + R R     ++    +  ++L  P    + Y  
Sbjct: 1379 HYKELCKYYSLVTR----CVEAGADRLLRLRTLDTSLWNANIRRAVMLTEP----IYYFV 1430

Query: 573  VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA------TKAGYD 623
            V     +  T  R+         +L    VQ ++ +   I+   ++              
Sbjct: 1431 VPTGSKFDFTRDRKSV------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAF 1484

Query: 624  IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672
            +V TVHD +  +          + L  +M           P     +P KAE +    
Sbjct: 1485 LVNTVHDCVWVDAHKCVADEVHADLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGPS 1542


>gi|321399199|emb|CBZ08517.1| putative mitochondrial DNA polymerase I protein C [Leishmania
            infantum JPCM5]
          Length = 1548

 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/418 (11%), Positives = 113/418 (27%), Gaps = 97/418 (23%)

Query: 276  VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334
            +   R    +  + +   L  A+  +   R   +     + TGR S      QN+P+   
Sbjct: 1201 LQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIPK--- 1257

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWM 392
                                       + +R  +++  G +  ++ AD + +E  VLA +
Sbjct: 1258 --------------------------EEDLRRLIVSRFGAQGMMIEADYSQLEVVVLAAL 1291

Query: 393  AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
              +   ++      D +    +                                      
Sbjct: 1292 CRDPRMMQELRDNVDFHCLRVSLMTKEPYED----------------------------- 1322

Query: 453  STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                +                +     +F R         +          +R+  A   
Sbjct: 1323 ----VVRKAKVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEH 1378

Query: 513  KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
             +  + + ++ + +     +E G   + R R     ++    +  ++L  P    + Y  
Sbjct: 1379 HYKELCKYYSLVTR----CVEAGADRLLRLRTLDTSLWNANIRRAVMLTEP----IYYFV 1430

Query: 573  VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA------TKAGYD 623
            V     +  T  R+         +L    VQ ++ +   I+   ++              
Sbjct: 1431 VPTGSKFDFTRDRKSV------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAF 1484

Query: 624  IVLTVHDEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672
            +V TVHD +  +          + L  +M           P     +P KAE +    
Sbjct: 1485 LVNTVHDCVWVDAHKCVADEVRADLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGPS 1542


>gi|328866460|gb|EGG14844.1| hypothetical protein DFA_10717 [Dictyostelium fasciculatum]
          Length = 1213

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/387 (12%), Positives = 97/387 (25%), Gaps = 32/387 (8%)

Query: 55   QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            ++L   LEN  +  V+ N      +    +N            +LA      S    +  
Sbjct: 664  ELLIRILENEAIKKVSFNCQESFKIF-FAYNTYFSPKNIWDPKILAWMYKPESKRVDMST 722

Query: 115  ---ALKLSSQKMEEGKELIARFCKGETHECLYDR---NKPNHREAWRLFGEYCKGDVTVT 168
                 ++ S    E   +I    +   +            N+              + + 
Sbjct: 723  LVVEYQIDSHDKLEMANVIKNLDQHTDNNNNNINPSMTVSNYTCLANDIRNGSILQLILE 782

Query: 169  REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY- 227
             ++         + Q +  +   +   G         T    +D     + ++   L   
Sbjct: 783  HKLSDAKLEPLQEMQ-IIPILSKMEYYGVSFCSEALKTCQVHIDSLLENITKQFHLLRDG 841

Query: 228  ----GLVSSSRCLEKLKTWLFLETGLHLE----------DLTETTCQRVLSSNKKLTPQA 273
                           + + +       +                    +     K     
Sbjct: 842  LGIKMDDFGLSQRGVVLSCINQIKPSRIPQIPDAKAQTLRKFAEIDLSLKEEKAKNGDME 901

Query: 274  IQVFNNRMRAS-RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +   R+    +      N  V+   S G+   T      + TGR S      Q +PR 
Sbjct: 902  NLIMACRIYLDHKRFSQFNNIFVKKYISVGQNIYTSWNHTGTATGRLSSSSPNVQQIPRN 961

Query: 333  SRSHEELDQIITHLPTSITSDPDPLQIISDC--------VRSCVIASEGKKLVVADLAGI 384
              + +  D+           D    +              R C     G  +V  D + I
Sbjct: 962  VANIKVSDKEDGDGNDYDDDDVSDDEEEGTTNASTVHINARDCFRTRPGYTMVALDYSQI 1021

Query: 385  EARVLAWMAGEQWKLKAFETGEDLYVT 411
            E RV+A  + ++  L  F+   D    
Sbjct: 1022 ELRVMAHQSDDEHLLHFFQQDADFPKV 1048



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 41/171 (23%), Gaps = 51/171 (29%)

Query: 540  ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
              K +          K    +    GR   +         ++  +               
Sbjct: 1045 FPKVKKFINDTKADTKKLKYVRTLLGRHRTFYSPHLTPGEIDRQS-------------VN 1091

Query: 600  NIVQAVSRDILAEGMMNATKA--------------------------------GYDIVLT 627
            +I+Q  + DI+   M+   +                                    ++L 
Sbjct: 1092 SIIQGSAADIIKAAMIRINQLLIQESKEVNQILQQQGQQQGQTNQQQNKDDIIEARLLLQ 1151

Query: 628  VHDEIVCETP----DTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
            +HDE++ E P    +        + H+M  +        LK        + 
Sbjct: 1152 IHDELIFEIPNVMLEIKPDILEKIKHMMECSTELKVD--LKVAMKIGNSWG 1200


>gi|261329543|emb|CBH12525.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei
            gambiense DAL972]
          Length = 1649

 Score = 92.5 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 111/402 (27%), Gaps = 99/402 (24%)

Query: 293  TLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L  A+  + + R   +F    + TGR S      QN+P+                    
Sbjct: 1319 ALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPK-------------------- 1358

Query: 352  SDPDPLQIISDCVRSCVIASEGKK---LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                      + +R  +++  G++   ++ AD + +E  VLA ++ +   L+      D 
Sbjct: 1359 ----------EDLRCLIVSRFGRRAGRMIEADYSQLEVVVLAALSRDARMLQELNDNVDF 1408

Query: 409  YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            +    +         V                                            
Sbjct: 1409 HCLRVSLMTKEPYEDVIH---------------------------------KVKQLKDPH 1435

Query: 469  NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                 +     +F R         A       T   R+  A  Q +  +   +    +  
Sbjct: 1436 YIQLRQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEEQHYKDLGRYY----RLV 1491

Query: 529  EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
               +E G   + + R      +    +  ++L  P    + Y  V     +  T  ++  
Sbjct: 1492 TDCVEAGADRLLQLRTLDATSWPPTMRRMVLLTEP----MHYFVVPTGSKFDFTKDKKAV 1547

Query: 589  REYTYGGKLTENIVQAVSRDILAEGMMNA---------TKAGYDIVLTVHDEIVCETPDT 639
                   +L    VQ ++ +I+                      +V TVHD +  +  ++
Sbjct: 1548 ------PRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDAHES 1601

Query: 640  -DEFNASMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672
              +     +  +M+S         P     +P KAE +    
Sbjct: 1602 VADEVVDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPS 1643


>gi|297476119|ref|XP_002688485.1| PREDICTED: polymerase (DNA directed) nu [Bos taurus]
 gi|296486338|gb|DAA28451.1| polymerase (DNA directed) nu [Bos taurus]
          Length = 158

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 22/124 (17%)

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-- 621
            GR      +   R++      Q  R+          +VQ  + D+    M+    A   
Sbjct: 1   MGRRRPLPRI---RAHDPQLRAQAERQAA------NFVVQGSAADLCKMAMIRIFTAMAT 51

Query: 622 -----YDIVLTVHDEIVCETPDTDEFNASMLYH-LMTS-----NPSWAKGLPLKAEGYES 670
                  ++  +HDE++ E  D+     + L    M +            +PLK      
Sbjct: 52  SPTLTARLLAQIHDELLFEVEDSQVPEFTALVQGTMEALQHVPALELQLQVPLKVSLSAG 111

Query: 671 KRYR 674
           + + 
Sbjct: 112 RSWG 115


>gi|72391456|ref|XP_846022.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei TREU927]
 gi|62176585|gb|AAX70690.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei]
 gi|70802558|gb|AAZ12463.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei brucei
            strain 927/4 GUTat10.1]
          Length = 1649

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 113/402 (28%), Gaps = 99/402 (24%)

Query: 293  TLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L  A+  + + R   +F    + TGR S      QN+P+                    
Sbjct: 1319 ALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPK-------------------- 1358

Query: 352  SDPDPLQIISDCVRSCVIASEGKK---LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                      + +R  +++  G++   ++ AD + +E  VLA ++ +   L+      D 
Sbjct: 1359 ----------EDLRCLIVSRFGRRAGRMIEADYSQLEVVVLAALSRDARMLQELNDNVDF 1408

Query: 409  YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            +    +         V    + +                                     
Sbjct: 1409 HCLRVSLMTKEPYEDVIHKVKQVKDPH--------------------------------- 1435

Query: 469  NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                 +     +F R         A       T   R+  A  Q +  +   +    +  
Sbjct: 1436 YIQLRQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEEQHYKDLGRYY----RLV 1491

Query: 529  EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
               +E G   + + R      +    +  ++L  P    + Y  V     +  T  ++  
Sbjct: 1492 TDCVEAGADRLLQLRTLDATSWPPTMRRMVLLTEP----MHYFVVPTGSKFDFTKDKKAV 1547

Query: 589  REYTYGGKLTENIVQAVSRDILAEGMMNA---------TKAGYDIVLTVHDEIVCETPDT 639
                   +L    VQ ++ +I+                      +V TVHD +  +  ++
Sbjct: 1548 ------PRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDAHES 1601

Query: 640  -DEFNASMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672
              +     +  +M+S         P     +P KAE +    
Sbjct: 1602 VADEVMDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPS 1643


>gi|32442311|gb|AAP82226.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 92.1 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/464 (11%), Positives = 112/464 (24%), Gaps = 102/464 (21%)

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            TLV++R      + +      +   Q++     L A   + +  +  + +N       W
Sbjct: 1   DTLVMSRLYYPNISDRDYERRPEGMPQRLYGRHSLEAWGYRLKCFKGDFAKN---DSNDW 57

Query: 155 RLFG----EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI-------NDRGYCVDVAL 203
             +     +YC  D  VT  +++ L+       +   L+  +          G+  D+  
Sbjct: 58  STYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASGFRFDMDA 117

Query: 204 AHTLNQIVDVERTKLDQELESL--------------------------TYGLVSSSRCLE 237
           A  +   +  E   +   +  +                          T     +    +
Sbjct: 118 AVRVRAQLQDEFDSITNAIAQIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTDFNPTSRQ 177

Query: 238 KLKTWLFLETG----LHLEDLTETTCQRVL------------SSNKKLTPQAIQVFNNRM 281
            +   L    G       E       +  L                      I++   + 
Sbjct: 178 NIAWALQTFRGARFTRVTETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQK 237

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +      N+   ++  DG +  +     +++TGR +        +            
Sbjct: 238 WLGQL-SEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNLGQV------------ 282

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                            + +   R   +   G  +V ADL G+E R+L           A
Sbjct: 283 -----------------VSAPWARELFVPHPGHIMVGADLEGLELRLLGHYL-------A 318

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
                           +   A      R   K +  A  Y  G         +    L+ 
Sbjct: 319 AFDSGSFAEVVVNGDIHQQNADRVGCTRTQVKTLTYAFIYGAGDVKL---GHSLQPELSD 375

Query: 462 FAHLVKTNSAPEEW----EDAENFCRWMQENHPEHAIEDLFIGT 501
                       ++       E     ++             G 
Sbjct: 376 AQKKTLGGELRRKFLDAIPGLEPLVDAVKLKVRSTGRLKGLDGR 419


>gi|21929663|gb|AAM81964.1|AF445378_1 DNA polymerase I-like protein C [Trypanosoma brucei]
          Length = 1649

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 111/402 (27%), Gaps = 99/402 (24%)

Query: 293  TLVEAMNSDGRLRGTLQF-LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
             L  A+  + + R   +F    + TGR S      QN+P+                    
Sbjct: 1319 ALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPK-------------------- 1358

Query: 352  SDPDPLQIISDCVRSCVIASEGKK---LVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                      + +R  +++  G++   ++ AD + +E  VLA ++ +   L+      D 
Sbjct: 1359 ----------EDLRCLIVSRFGRRAGRMIEADYSQLEVVVLAALSRDARMLQELNDNVDF 1408

Query: 409  YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
            +    +         V                                            
Sbjct: 1409 HCLRVSLMTKEPYEDVIH---------------------------------KVKQLKDPH 1435

Query: 469  NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
                 +     +F R         A       T   R+  A  Q +  +   +    +  
Sbjct: 1436 YIQLRQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEEQHYKDLGRYY----RLV 1491

Query: 529  EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
               +E G   + + R      +    +  ++L  P    + Y  V     +  T  ++  
Sbjct: 1492 TDCVEAGADRLLQLRTLDATSWPPTMRRMVLLTEP----MHYFVVPTGSKFDFTKDKKAV 1547

Query: 589  REYTYGGKLTENIVQAVSRDILAEGMMNA---------TKAGYDIVLTVHDEIVCETPDT 639
                   +L    VQ ++ +I+                      +V TVHD +  +  ++
Sbjct: 1548 ------PRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDAHES 1601

Query: 640  -DEFNASMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672
              +     +  +M+S         P     +P KAE +    
Sbjct: 1602 VADEVMDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPS 1643


>gi|281306676|ref|YP_003345482.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2]
 gi|271277981|emb|CBH51587.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2]
          Length = 789

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/430 (11%), Positives = 110/430 (25%), Gaps = 96/430 (22%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAMNSDG 302
           +T   VL +       A  + N + +  +                      +++ +  D 
Sbjct: 391 STSGEVLKALATFGFAAGSLLNRKAQLDKDNGTYYISHEYNKDGSIKKTKGMLQYIGPDS 450

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            +  +L    A+ T R S      QNLPR     + + +       +     D       
Sbjct: 451 IIHHSLNVA-ATITARLSSSDPNLQNLPRSDEDDDGVAKSRVKEMFTSRFGDDG------ 503

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT---------- 412
                        ++  D   +E  +LA ++G+Q  LK  + G D++             
Sbjct: 504 ------------VIIEVDYTALEVVMLAALSGDQALLKHLQNGTDMHCLRLAAKLKRPYE 551

Query: 413 ----YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
                A+  +       K QR   K    A  Y   A             ++        
Sbjct: 552 EILAIAKDKHHPEHNSIKQQRTDIKPPSFAAQYGASAS-----GIAFATGVSLEYATEFL 606

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV--KKAWRQKHSRVSELWNELHQ 526
            +    +  A  F   ++            +    +     + +R+ + +         +
Sbjct: 607 ATEARLFPRAIAFRDVVRAEVERTGALPTGLMREQDDAGNFRVYRRGYYQADGGTCYSFR 666

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
            F+      +  +   +      Y  + ++  ++ L +GR +                  
Sbjct: 667 QFDVWDAEARKRVMGFKPTQIANYWCQGESGYLMTLSAGRVM------------------ 708

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-S 645
             R                        M         ++  VHD +  +          +
Sbjct: 709 --RWLIQHPMF----------------MSKI-----FMINNVHDALYFDVHKDYLKEVAA 745

Query: 646 MLYHLMTSNP 655
               +M   P
Sbjct: 746 AAKAIMEDAP 755



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 82/295 (27%), Gaps = 60/295 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--K 58
           M T  +D ET++   L       +  D  ++L  +  D       D V    + +    +
Sbjct: 1   MRTRILDLETQNHPYLGAV-ASAHCPDNYIVLAGWRDD------VDGVAGTPVERRFNNR 53

Query: 59  EALENTD-------VTIVAHNSYFERTVLK-ACFNLDIP----IHRWICTLVLARSNG-- 104
           E  ++           +V HN+ +E +          +       R +CT +        
Sbjct: 54  EEADDPAWFNLDGVDLLVCHNAMYEMSWFITRYQPEFLKYLKRGGRVLCTQLGEYLCSHQ 113

Query: 105 ---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
               P+ L  V +    + +                  + L+++          L  EY 
Sbjct: 114 TWTYPA-LNEVAQKHGGTPKVDG--------------VKLLWEQGVLTADIDPALLSEYL 158

Query: 162 K---GDVTVTREIFKRLEPLSSKEQELWYLDQT---------INDRGYCVDVALAHTLNQ 209
               GD+  T   F       +K        +              G  VD  +A   + 
Sbjct: 159 IGPSGDIENTARSFYGQMQYLTKMGMWRMFLERCEGMVAFSFCEAAGLYVDQQVAQRNHA 218

Query: 210 IVDVERTKLDQELE----SLTYGLVSSSRCLEKLKTWLF---LETGLHLEDLTET 257
              +E   +++++      L      +      L   LF   ++    +      
Sbjct: 219 AQLLELEGINKQIFALLPELPETFEFNWGSDYHLSALLFGGEVKYDERVPRTDAD 273


>gi|157866599|ref|XP_001687691.1| mitochondrial DNA polymerase I protein C [Leishmania major strain
            Friedlin]
 gi|68125305|emb|CAJ03123.1| putative mitochondrial DNA polymerase I protein C [Leishmania major
            strain Friedlin]
          Length = 1548

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/416 (12%), Positives = 113/416 (27%), Gaps = 93/416 (22%)

Query: 276  VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVFPPQNLPRPSR 334
            +   R    +  + +   L  A+  +   R   +     + TGR S      QN+P    
Sbjct: 1201 LQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCVTATGRLSSQSPNLQNIP---- 1256

Query: 335  SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
              E+L ++I    ++                          ++ AD + +E  VLA +  
Sbjct: 1257 KEEDLRRLIVSRFSAQGM-----------------------MIEADYSQLEVVVLAALCR 1293

Query: 395  EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            +   ++      D +    +                                        
Sbjct: 1294 DPRMMQELRDNIDFHCLRVSLMTKEPYED------------------------------- 1322

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
              +                +     +F R         +          +R+  A    +
Sbjct: 1323 --VVRKAKVEKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEHHY 1380

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
              +S+ ++ + +     +E G   + R R     ++    +  ++L  P    + Y  V 
Sbjct: 1381 KELSKYYSLVTR----CVEAGADRLLRLRTLDTSLWNANIRRVVMLTEP----MYYFVVP 1432

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA------TKAGYDIV 625
                +  T  R+         +L    VQ ++ +   I+   ++              +V
Sbjct: 1433 TGSKFDFTRDRKSV------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGEKAFLV 1486

Query: 626  LTVHDEIVCETPDTDEFNA-SMLYHLMTSN--------PSWAKGLPLKAEGYESKR 672
             TVHD +  +          + L  +M           P     +P KAE +    
Sbjct: 1487 NTVHDCVWVDAHKCVADEVCADLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGPS 1542


>gi|32442307|gb|AAP82224.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/461 (11%), Positives = 112/461 (24%), Gaps = 102/461 (22%)

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            TLVL+R      + +          Q++     L A   + +  +  + +N       W
Sbjct: 1   DTLVLSRLYYPNISDRDYERRPDGMPQRLYGRHSLEAWGYRLKCFKGDFAKN---DSNDW 57

Query: 155 RLFG----EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI-------NDRGYCVDVAL 203
             +     +YC  D  VT  +++ L+       +   L+  +          G+  D+  
Sbjct: 58  STYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASGFRFDMDA 117

Query: 204 AHTLNQIVDVERTKLDQELESL--------------------------TYGLVSSSRCLE 237
           A  +   +  E   + + +  +                          T     +    +
Sbjct: 118 AVRVRAQLQDEFDSITEAIAKIYLYVPGKVFTPKRADKKRGYVAGAPMTRLTDFNPTSRQ 177

Query: 238 KLKTWLFLETGLHLEDLT----ETTCQRVL------------SSNKKLTPQAIQVFNNRM 281
            +   L    G     +T        +  L                      I++   + 
Sbjct: 178 NIAWALQTFRGARFTKITETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQK 237

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +      N+   ++  DG +  +     +++TGR +        +            
Sbjct: 238 WLGQL-SEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNLGQV------------ 282

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                            + +   R   +   G  +V ADL G+E R+L           A
Sbjct: 283 -----------------VSAPWARELFVPHPGHIMVGADLEGLELRLLGHYL-------A 318

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
                           +   A      R   K +  A  Y  G         +    L+ 
Sbjct: 319 AFDEGSFAEVVVNGDIHQQNADRVGCTRTQVKTLTYAFIYGAGDVKL---GHSLQPELSD 375

Query: 462 FAHLVKTNSAPEEW----EDAENFCRWMQENHPEHAIEDLF 498
                       ++       E     ++            
Sbjct: 376 AQKKTLGGELRRKFLDAIPGLEPLVDAVKLKVRSTGRLKGL 416


>gi|328883338|emb|CCA56577.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712]
          Length = 571

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 102/389 (26%), Gaps = 119/389 (30%)

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           ++T +  L+      P    +     +  R       + ++    DGR R      G + 
Sbjct: 251 KSTRRWELAEL--DHPAVEPLIAY-KKLYRIWTAHGWSWLQDWVRDGRFRPEY-LPGGTV 306

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           +GRW+        +P+                                +R  V+A +G +
Sbjct: 307 SGRWTTNGGGALQIPK-------------------------------VIRRAVVADDGWR 335

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           LVVAD   +E RVLA ++ +   ++     +DLY     R+F+              K+ 
Sbjct: 336 LVVADADQMEPRVLAAISRDPGLMEVAGHPDDLYTRLSDRAFSGDRD--------HAKIA 387

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
            L   Y            T+G  L   A L                              
Sbjct: 388 LLGAIY----------GQTSGDGLKNLAAL------------------------------ 407

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                          R++  R       + +A +   E         R     V   + +
Sbjct: 408 ---------------RRRFPRAVAY---VDEAAKAGEEGRLVRTWLGRTSPRAVGAGEAE 449

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNT---TTRQLTREYTYGGKLTENIVQAVSRD--IL 610
                             G  +                   G      +VQ  + D  +L
Sbjct: 450 EAG-----------LPQEGGEQPAEEGEFVPGYASGNARARGRFTRNFVVQGSAADWALL 498

Query: 611 AEGMMN--ATKAGYDIVLTVHDEIVCETP 637
               +         ++V   HDE++   P
Sbjct: 499 MLAALRRSLAGMRAELVFFQHDEVIVHCP 527


>gi|61676024|gb|AAX51677.1| DNA polymerase I [Thermocrinis ruber DSM 12173]
          Length = 169

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 61/147 (41%)

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
              LQ I   +R    A EG   V+AD + IE R+ A   GE   +KAF+ G DL+  T 
Sbjct: 1   DPNLQNIPKDLRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIKAFQEGRDLHRYTA 60

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
           +         +TK++R + K +   L Y   AK   + A+T G++L              
Sbjct: 61  SILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPVEEAQAIRERFFS 120

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIG 500
            +E  +++   ++E   +         
Sbjct: 121 YFEGFKDWHNKVKEELKKTGKSSGHTL 147


>gi|194100330|ref|YP_002003760.1| gp5 [Enterobacteria phage EcoDS1]
 gi|193201325|gb|ACF15804.1| gp5 [Enterobacteria phage EcoDS1]
          Length = 723

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 98/766 (12%), Positives = 201/766 (26%), Gaps = 154/766 (20%)

Query: 7   DFETRSPIDLT---KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           D ET   +D      CG+   AE    + +       P+          +   ++E   +
Sbjct: 11  DIETNGLLDTVSQFHCGVLINAESNETLKYGVA----PMVGIVGGFKEYV-HKVEEIAAS 65

Query: 64  TDVTIVAHN-SYFERTV---LKA-CFN--LDIPIHRWICTLVLARSNGLPSALKAVGEA- 115
            D  +V HN   ++      LK   F    + P H+ I TLVL R          +G   
Sbjct: 66  PDGMLVFHNGINYDVPAIDKLKRLYFGKRFNFPKHKMIDTLVLGRLMYPNIKFSDMGAVK 125

Query: 116 ------------------LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                              +L   K E   + +A+ CK E  E              +  
Sbjct: 126 AGRLPPQMMGRQSLEAWGYRLGEMKGEYKHDYVAK-CKAEGIEYKAGDEWLF---PSQEM 181

Query: 158 GEYCKGDVTVTREIFKRLEPL----------------SSKEQELWYLDQTINDRGYCVDV 201
            +Y   DV VT  +FK+                       E +  +    +   GY ++ 
Sbjct: 182 LDYNVQDVVVTLALFKKFLTDKYYFQSEQFAFEQIYALRLEHDAAWTCAKMERNGYPMNT 241

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
            +   L + + V+R +L  +L S      +     E  +     +       +       
Sbjct: 242 EMVEGLYRELTVKRAELLDKLRSTFGSWYAPKGGKEFFRHPRTGKDLPKYPRVVYPKVGG 301

Query: 262 VLSSNKKLTPQAIQVFNNRMRASR------SAVLKL-------NTLVEAMNSDGRLRGTL 308
           +    K    +       R           + +  +       + L + +   G      
Sbjct: 302 IFKKPKNKAQRLGLEPCERDTRDTMEGAPFTPITYVEFNPGSGDHLAKVLMERGWEPVDF 361

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TG+        +++  P    ++  +++              +  +  ++  +
Sbjct: 362 -----TDTGKPVVDDETLEHVKLPDAEAQDCVELVREYLVVQKRIGQAAEGKNAWLK--L 414

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKA-----FETGEDLYVTTYARSFNVAPAQ 423
           +  +G+     +  G         +    ++ A      ET    +   + +        
Sbjct: 415 VGPDGRMHGSINPCGAVTGRATHSSPNMAQVPANGAPYGETCRGAFGAAWNKKDGKPDPW 474

Query: 424 VTKDQRAIGKVMEL------ALGYQGGAKAF--------QKMASTTGLNLNTFAHLVKTN 469
           +          +EL      A  + GG  A            A   GL  N         
Sbjct: 475 I--QVGVDASGLELRCLGNRAAPFDGGEYAKTVVEGDIHWANAVNAGLAPNVKRDKSNHE 532

Query: 470 S-APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             A         +         +  +           + K + +    + +L   +    
Sbjct: 533 HEAFRNNAKTFIYAFLYGAGAAKIGLIVGGGKKEGAALMKKFIEGTPAIKDLREAVSNTL 592

Query: 529 EQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
               +   G+ I+  KRR +  +               GR +  R   +           
Sbjct: 593 ISDSKWVDGENIVKWKRRWLRGL--------------DGRRIHIRSPHS----------- 627

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDIV---------LTVHDEIV 633
                         ++Q     +    ++       +AGY I            VHDE+ 
Sbjct: 628 ----------ALNALLQGDGAVVCKHWIVETERMLEEAGY-IHGWEGDFAYMAWVHDELQ 676

Query: 634 CETPDTDEFNASMLYHL----MTSNPS-WAKGLPLKAEGYESKRYR 674
                  +  A  +  +    M      +     L  EG     ++
Sbjct: 677 IACR--TQEIAEEVVKIAQLAMRKVGEFYNFKCVLDTEGKIGPTWK 720


>gi|32442309|gb|AAP82225.1| DNA polymerase [Podovirus SOG]
          Length = 419

 Score = 91.3 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/464 (10%), Positives = 111/464 (23%), Gaps = 102/464 (21%)

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            TLVL+       + +          Q++     L A   + +  +  + +N       W
Sbjct: 1   DTLVLSSLYYPNISDRDYERRPDGMPQRLYGRHSLEAWGYRLKRFKGDFAKN---DSNDW 57

Query: 155 RLFG----EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI-------NDRGYCVDVAL 203
             +     +YC  D  VT  +++ L+       +   L+  +          G+  D+  
Sbjct: 58  STYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASGFRFDMDA 117

Query: 204 AHTLNQIVDVERTKLDQELESL--------------------------TYGLVSSSRCLE 237
           A  +   +  E   + + + ++                          T     +    +
Sbjct: 118 AVRVRATLQDEFDSITKSIAAIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTDFNPTSRQ 177

Query: 238 KLKTWLFLETGLHLED----LTETTCQRVL------------SSNKKLTPQAIQVFNNRM 281
            +   L    G               +  L                      I++   + 
Sbjct: 178 NIAWALQTFRGARFTKVTETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQK 237

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
              +      N+   ++  DG +  +     +++TGR +        +            
Sbjct: 238 WLGQL-SEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNLGQV------------ 282

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                            + +   R   +   G  +V ADL G+E R+L           A
Sbjct: 283 -----------------VSAPWARELFVPHPGHVMVGADLEGLELRLLGHYL-------A 318

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
                           +   A      R   K +  A  Y  G         +    L+ 
Sbjct: 319 AFDQGSFAEVVVNGDIHQQNADRVGCTRTQVKTLTYAFIYGAGDVKL---GHSLQPELSD 375

Query: 462 FAHLVKTNSAPEEW----EDAENFCRWMQENHPEHAIEDLFIGT 501
                       ++       E     ++             G 
Sbjct: 376 AQKKTLGGELRRKFLDAIPGLEPLVDAVKLKVRSTGRLKGLDGR 419


>gi|298707037|emb|CBJ29839.1| DNA polymerase I (POL I) [Ectocarpus siliculosus]
          Length = 482

 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 108/346 (31%), Gaps = 41/346 (11%)

Query: 306 GTLQFLGASRTG----RWSGCVFPPQNLPR----PSRSHEELDQIITHLPTSITSDPDPL 357
            +     A  T     R  G      + P       +++   D     +         P 
Sbjct: 147 HSYSSWEAESTRQVLVRLGGRHGRVYSYPADKVFRVQANFFSDANAEAMKDGGLGARCPW 206

Query: 358 QIISDCV--RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                 +  R  ++AS G   V AD + +E R++A ++G+   LK F  G D++ T  A 
Sbjct: 207 FAKEAMIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAA 266

Query: 416 S--FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
                     +T+++R   K++   + Y   A A         L L+         +  +
Sbjct: 267 LKGRGKKAEDITEEERRQTKIVVYGVLYGQSADALV-----PQLRLSRPEAFKIRQTVLK 321

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV----SELWNELHQAFE 529
            +     F + ++E+  E    +  +G          R+   ++        +   +   
Sbjct: 322 TFPKLTEFLKKVKEDCKECGYVETLLGR---------RRYLPQINSTDKAERSRAERQAA 372

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
            T   G A    K     +    +    +    P+G+ +            +++      
Sbjct: 373 NTTTQGSAADLLKLAATNVAARLERCEWM--SRPAGKPICTPPPNAAAGGTSSSALASGT 430

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCE 635
                            RD     +    +    +VL++HDE++ E
Sbjct: 431 ADATVPCRFP-------RDGGRSQLAR--RPACRLVLSIHDELLYE 467


>gi|153799363|gb|ABS50441.1| DNA polymerase I [Enterococcus phage F4]
          Length = 299

 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 80/281 (28%), Gaps = 60/281 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-DHPVE--LWDCVHDPV------- 52
            L +DFET         G   Y E   +  F+  +     +        H          
Sbjct: 20  YLAMDFETVGDN----GGTDMYRE--EISGFSLTYRYKGEIINGYVPMRHREEDGSPSHL 73

Query: 53  -------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG- 104
                    + +K   E+   T V HN+ F+  + KA   +  P      TL+L      
Sbjct: 74  NIANVKWAEEGIKRVFESDKAT-VWHNATFDMGLAKASLGIA-PRTPVHDTLILMHLLDE 131

Query: 105 --LPSALKAVGEA-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                 LK +    L + S   EE                ++ +N      A  +   Y 
Sbjct: 132 DLPSYQLKVLATRFLNIPSDTFEE----------------MFGKNAKFADIAVEIARWYA 175

Query: 162 KGDVTV-----TREIFKRLEP--------LSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
             D  V       ++    +P            E+        +   G+ +++       
Sbjct: 176 GKDTYVGFLLFEWQLNILNKPSFAKIKKVYERIERPCIMATFEMESEGFHINMEEVEVQR 235

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
           +  + E  ++   L++    +        +L   L+++   
Sbjct: 236 KESEAELEEISARLQARFGDVNF--SSPSQLLKLLYVDNDW 274


>gi|32442313|gb|AAP82227.1| DNA polymerase [Podovirus GOM]
          Length = 404

 Score = 90.6 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 61/416 (14%), Positives = 103/416 (24%), Gaps = 117/416 (28%)

Query: 95  CTLVLARS--------------------NGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
            TLVL+R                          +L+A G  L +   K E GK L   + 
Sbjct: 1   DTLVLSRLFFTDLLDRDFRSRPANMPANLYGRHSLEAWGHRLGV--HKSEFGKSLDGDWS 58

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR-------LEPLSSKEQELWY 187
                                  G YC+ DV V+ ++ +               E  +  
Sbjct: 59  TYTP-----------------EMGAYCQQDVVVSVKVAQLFESKLETHSDCIDTEHRIAD 101

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG------------------- 228
           +       G+  DV  A  L   +  E   + +E+ S                       
Sbjct: 102 VMAWQERVGFPFDVDKAQQLESKLRTELDAISEEMRSTFAFVDGGCFTPKRSNGPRGYVE 161

Query: 229 -------LVSSSRCLEKLKTWLFLETGLHLEDLTETT----CQRVLSSNKKLTPQ-AIQV 276
                     S    + +            ++ T +        VL            ++
Sbjct: 162 GAAMCKLKEFSPTSRDHIAWAFETFRNWEPKERTASGRAKIDDSVLKEIGSPEALKFARI 221

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              +    + +  K   L + +N  G++  +      + TGR +         P      
Sbjct: 222 LELQKHLGQLSEGKNAWLQQEVN--GKIHHSCILN--TNTGRMAHLRPNLAQAPSAPEY- 276

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                                       R+       +  V AD +G+E R LA      
Sbjct: 277 ----------------------------RALFHPGTNRLQVGADASGLELRCLAHYL--- 305

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
               A   G     +      +   A +    R  GK +   L Y GG       A
Sbjct: 306 ----APFDGGKFAESVVHGDIHTDLAAIYGTDRKSGKGVTYCLIYGGGDTKLGLTA 357


>gi|108757261|ref|YP_629462.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622]
 gi|108461141|gb|ABF86326.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622]
          Length = 669

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 94/730 (12%), Positives = 174/730 (23%), Gaps = 169/730 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVIL--FAFGFDDHPVELWDCVHDPVMPQVLK 58
           M     D ET     L + G+        ++    A             +      Q  +
Sbjct: 1   MNVWSFDTETW----LIQPGLLA----PPLVCGSIAAAAPGSE----RLLDKAQARQFFR 48

Query: 59  EALENTDVTIVAHNSYFERTVLKA-----CFNLD--IPIHRWICTLVLARSNGLPSAL-- 109
           EA+  +D  +V  N  ++  V+ A        +   +   R  C  +      +   L  
Sbjct: 49  EAIAASDTRLVGANLAYDLGVMAADDPSLVAPIFAALEAGRLHCVQIREALIDIARGLYG 108

Query: 110 ----------KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA--WRLF 157
                        G    L+          I+   K      L                 
Sbjct: 109 VDPSTGRKLDDDEGARYPLALLVQRYLGLDISEDKKNPKAWRLRYAELDGVPVERWPTEA 168

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND------------RGYCVDVALAH 205
             Y K D   T ++F R E ++ +      L                   G   +     
Sbjct: 169 AAYPKRDARYTLDVFFRQEAVARETPNGGNLHAEAEQMRAAFALHLASIWGLRTNGDSVA 228

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET-------- 257
            L + V+ E  +   + ++        ++  ++L   +             +        
Sbjct: 229 VLRERVEREWGENRAKFQAAGIYRADGTKDSKRLAALVTAAYDGQPPITAPSDRFPDGQV 288

Query: 258 -TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
            T +  L          ++      R  +     L+     + +   L    +F     T
Sbjct: 289 ATDRDTLL---GSGDALLEDLGKSGRVDKYKSTYLD----VVEAGTSLPINPRFNVLVST 341

Query: 317 GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
            R S      Q LP+                                +R    A  G   
Sbjct: 342 TRVSSD---YQQLPQKG-----------------------------GIREVHEARPGFAY 369

Query: 377 VVADLAGIEARVL----AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
              D  G+E R +     W  G     +A  +G D++    A     +  ++    +   
Sbjct: 370 CSVDYGGLELRTMAQRAIWELGYSKMAEALNSGLDVHTLAAAEFLGASYDELLPKVK--- 426

Query: 433 KVMELALGYQGGAKAF----QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
               LA+ ++  AK          +   L  N  A    +     +  D     R +   
Sbjct: 427 AKDPLAVAFRQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLLAKRADVCGIERIVITV 486

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
             +  +         + +   W            EL Q  + +   G             
Sbjct: 487 QRKPKMVCRACVEVAKELDTKWLNAWPE----QRELQQRAKSSTYGGGFADVM------- 535

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                                       R     T            ++     Q +   
Sbjct: 536 ---------------------IPGANILRGGCGYT------------QILNTPFQGLGAV 562

Query: 609 ILAEGMMNATKA----------GYDIVLTVHDEIVCETP--------DTDEFNASMLYHL 650
                M   ++           G  +VL VHDE++ E P        D  E  A ++   
Sbjct: 563 GCKLAMWRVSREMYVDRRSPLYGSRLVLMVHDELISELPANSAQRMHDAAERKAYLMREA 622

Query: 651 M-TSNPSWAK 659
           M  + P  A 
Sbjct: 623 MKETTPDLAP 632


>gi|83286526|ref|XP_730200.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489855|gb|EAA21765.1| unnamed protein product [Plasmodium yoelii yoelii]
          Length = 1103

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/379 (11%), Positives = 101/379 (26%), Gaps = 75/379 (19%)

Query: 264  SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
               K    Q I        + +     +  L + +  + +          + TGR S   
Sbjct: 756  EKEKDKIKQIINNIKLYRESKKLFQNYIENLPKYIQKNTKKIHCNLNQLGASTGRLSCDQ 815

Query: 324  FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
               QN+                  +   +  + + I  + +++  I    K L+  D   
Sbjct: 816  PNLQNIHSK----------FRCTISLKLNQLNSISIKKENIKNTSI---NKNLLTFDYKQ 862

Query: 384  IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
            +E  V+A+++ +   LK     +    T           ++TK+ R + K +   + Y  
Sbjct: 863  MELFVMAYLSFDNQLLKMLNNSDVFVETAKILF---NTNEITKELRRMTKTVIYGILYGQ 919

Query: 444  GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                         L ++        ++    + +   F +  +            IG   
Sbjct: 920  SENGL-----AKNLLISENFAKSLIDNFFNFYPNVYKFMQKQKILVKNMNSVYTLIGR-- 972

Query: 504  ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
            +R+          +                       + R  +         + +   L 
Sbjct: 973  KRIVDL------GIKN---------------------KYRISMNTPIQGCSADIMKFALL 1005

Query: 564  SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---A 620
            S   ++  D   N+                      N         +   ++   +    
Sbjct: 1006 SCNKIISFDNNINK-------------DINIFLKMNN---------INVSLLKKYQNYIK 1043

Query: 621  GYDIVLTVHDEIVCETPDT 639
               ++L +HDE++ E  + 
Sbjct: 1044 STKLILQIHDELLFECDEN 1062


>gi|148361461|gb|ABQ59312.1| DNA polymerase I [Venenivibrio stagnispumantis]
          Length = 158

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 1/154 (0%)

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              +R    A EG  ++ AD + IE R++A    ++  +KAF+  +DL+  T +      
Sbjct: 1   PKDLRHLFTAPEGYSIITADYSQIELRLVAEYTKDENMVKAFKENKDLHKLTASIITGKN 60

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAE 479
             ++TK++R + K +   L Y    K+    AS+  G+N+          +  E ++D +
Sbjct: 61  YEEITKEERNLAKAINFGLIYGISPKSLMDYASSNYGINITLPEANKFHKNFFEFYKDIK 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
            +    + +   H             + K +   
Sbjct: 121 KWHEETKNHLNHHGYIIAKTLLGRRILAKKFTDA 154


>gi|77118186|ref|YP_338108.1| DNA polymerase [Enterobacteria phage K1F]
 gi|72527930|gb|AAZ72982.1| DNA polymerase [Enterobacteria phage K1F]
 gi|84095014|emb|CAJ29370.2| gp5 protein [Enterobacteria phage K1F]
          Length = 723

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 98/764 (12%), Positives = 201/764 (26%), Gaps = 150/764 (19%)

Query: 7   DFETRSPIDLT---KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           D ET   +D      CG+   AE    + +       P+          + Q ++E    
Sbjct: 11  DIETNGLLDTVSQFHCGVLINAESNETLKYGVA----PMVGIVGGFKEYV-QKVEEIAAT 65

Query: 64  TDVTIVAHN-SYFERTV---LKA-CFN--LDIPIHRWICTLVLARSNGLPSALKAVGEA- 115
               +V HN   ++      LK   F    + P H+ I TLVL R          +G   
Sbjct: 66  PTGMLVFHNGINYDVPAIDKLKRLYFGKRFNFPKHKMIDTLVLGRLMYPNIKFSDMGAVK 125

Query: 116 ------------------LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                              +L   K E   + +A+ CK E  E              +  
Sbjct: 126 AGRLPPKMMGRQSLEAWGYRLGEMKGEYKHDYVAK-CKAEGIEYKAGDEWLF---PSQEM 181

Query: 158 GEYCKGDVTVTREIFKRLEPL----------------SSKEQELWYLDQTINDRGYCVDV 201
            +Y   DV VT  +FK+                       E +  +    +   GY ++ 
Sbjct: 182 LDYNVQDVVVTLALFKKFLTDKYYFQSEQFAFEQIYALRLEHDAAWTCAKMERNGYPMNT 241

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
            +   L + + V+R +L  +L S      +     E  +     +       +       
Sbjct: 242 EMVEGLYRELTVKRAELLDKLRSTFGSWYAPKGGKEFFRHPRTGKDLPKYPRVVYPKVGG 301

Query: 262 VLSSNKKLTPQAIQVFNNRMRASR------SAVLKL-------NTLVEAMNSDGRLRGTL 308
           +    K    +       R           + +  +       + L + +   G      
Sbjct: 302 IFKKPKNKAQRLGLEPCERDTRDTMEGAPFTPITYVEFNPGSGDHLAKVLMERGWEPVDF 361

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                + TG+        +++  P    +   +++              +  +  ++  +
Sbjct: 362 -----TDTGKPVVDDETLEHVKLPDAEAQACVELVREYLVVQKRIGQAAEGKNAWLK--L 414

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKA-----FETGEDLYVTTYARSFNVAPAQ 423
           +  +G+     +  G         +    ++ A      ET    +   + ++       
Sbjct: 415 VGPDGRMHGSINPCGAVTGRATHSSPNMAQVPANGAPYGETCRGAFGAAWNKTDGKPDPW 474

Query: 424 VTKDQRAIGKVMEL------ALGYQGGAKAF--------QKMASTTGLNLNTFAHLVKTN 469
           +          +EL      A  + GGA A            A   GL  N        +
Sbjct: 475 I--QVGVDASGLELRCLGNRAAPFDGGAYAKTVVEGDIHWANAVNAGLAPNVPRDKSNHD 532

Query: 470 S-APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
             A         +         +  +           + K + +    + +L   +    
Sbjct: 533 HDAFRNNAKTFIYAFLYGAGAAKIGLIVGGGKKEGSALMKKFIEGTPAIKDLREAVSNTL 592

Query: 529 EQTIEN--GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
               +   G+ I+  KRR +  +               GR +  R   +           
Sbjct: 593 ISESKWVDGENIVKWKRRWLKGL--------------DGRRIHIRSPHS----------- 627

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGY---------DIVLTVHDEIV 633
                         ++Q     +    ++       +AGY          +   VHDE+ 
Sbjct: 628 ----------ALNALLQGDGAVVCKHWIVETERMLEEAGYVHGWEGDFAYM-AWVHDELQ 676

Query: 634 CETP--DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYESKRYR 674
                 +  E    +    M      +     L  EG     ++
Sbjct: 677 IACRTQEIAERTVEIAQLAMRKVGEFYNFKCVLDTEGKIGPTWK 720


>gi|32442289|gb|AAP82215.1| DNA polymerase [Podovirus SOG]
          Length = 400

 Score = 89.8 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/467 (12%), Positives = 113/467 (24%), Gaps = 133/467 (28%)

Query: 95  CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            TLVL+R          +LKA G  +    Q+  E  +                      
Sbjct: 1   DTLVLSRLFNPIRENGHSLKAWGWRVGCLKQEQPENFD---------------------- 38

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKE--------QELWYLDQTINDRGYCVDVA 202
            E      +YC  DV +   ++  L                 +  + +     G+  +  
Sbjct: 39  -EFTPAMLDYCVQDVRLNEAVYNFLIKEGKIFSEESVSLEHNVAKIIKQQEKNGFFFNTQ 97

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLV-------------------------------- 230
            A  L   +  ++  ++ E+ S     +                                
Sbjct: 98  QAMELLAELKAKQLAVEDEVHSTFKPKLVDDKLVTPYVKKDGELSKRGMTDEEYDRCIKT 157

Query: 231 -------------SSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTP--- 271
                         +    +++  +L     +             +  L   + +     
Sbjct: 158 QSVEPFMRQKLVDFNLGSRKQIGEYLIDFGWIPKKFTPTGQPIVDEGTLKKIEHIREAKL 217

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
            A  +   +  A  ++  +++ L      D R+ G++   G + TGR +        +P 
Sbjct: 218 IADFLLYQKRIAQVTS--RIDEL-----KDDRVHGSVIPNG-TITGRMTHRNPNMAQVP- 268

Query: 332 PSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAW 391
                                  +         RSC    EG+KLV  D +G+E R+LA 
Sbjct: 269 -----------------------NAGSPYGKECRSCWTIPEGRKLVGIDASGLELRMLAH 305

Query: 392 MAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM 451
              +            +                    R   K    AL Y  G      +
Sbjct: 306 YMNDPEY---------IEEVVNGDIHTTNQNLAGLKTRDQAKTFIYALVYGAGDAKIGSV 356

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
           A              +      +   +    +   +   E       
Sbjct: 357 AGG------GLKKGKELKQTFFKNLPSLKNLKEKVQKASERGYLKGL 397


>gi|70949566|ref|XP_744181.1| DNA polymerase 1 [Plasmodium chabaudi chabaudi]
 gi|56524028|emb|CAH74320.1| DNA polymerase 1, putative [Plasmodium chabaudi chabaudi]
          Length = 1069

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/380 (11%), Positives = 96/380 (25%), Gaps = 77/380 (20%)

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGC 322
              K+   Q I        + +     +  L + +  +  ++      LGA  TGR S  
Sbjct: 674 EKEKENIKQIISNIKLYRESKKLFQNYIENLPKHIQKNTNKIHCNFNQLGA-STGRLSCD 732

Query: 323 VFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLA 382
               QN+    R    L        +  T       +              + L+  D  
Sbjct: 733 QPNLQNIHSKFRCTISLKNDDIKPISVKTKHVKNKSV-------------NQNLLTFDYK 779

Query: 383 GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
            +E  V+A+++ +   LK     +    T            VTK+ R + K +   + Y 
Sbjct: 780 QMELFVMAYLSFDSQLLKMLNNSDVFVETAKVLF---NTNDVTKELRRMTKTVIYGILYG 836

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                         L ++        ++    + +   F +  +            IG  
Sbjct: 837 QSENGL-----AKNLLVSENFAKSLIDNFFNFYPNVFKFMQKQKILVKNINSVYTLIGR- 890

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
            +R+          +                        +      +           +L
Sbjct: 891 -KRLVD------PTIKN--------------------KYRISMNTPIQGCAADIMKFALL 923

Query: 563 PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK--- 619
              + L Y D                 +         N         +   ++   K   
Sbjct: 924 SCHKILSYFD--------------NPNQDIDTFLKMNN---------INISLLKKYKNYI 960

Query: 620 AGYDIVLTVHDEIVCETPDT 639
               ++L +HDE++ +  + 
Sbjct: 961 KSTKLILQIHDELLFQCDEN 980


>gi|48697101|ref|YP_024759.1| DNA polymerase I [Pseudomonas phage PaP2]
 gi|46369536|gb|AAS89617.1| p31 [Pseudomonas phage PaP2]
          Length = 801

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/595 (10%), Positives = 142/595 (23%), Gaps = 122/595 (20%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQK 122
           +D+    HN  ++   L        P +    T+      GL  +    + + +      
Sbjct: 230 SDIPKCFHNGLYDSFHLMRY--HAAPNNWIFDTM------GLSHSWYSELSKDVGFLCSW 281

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-----IFKRLEP 177
           +    +        E                   + +Y   D  +        +      
Sbjct: 282 LLYDHKEWKYMADREHKAIGG----------IESYWKYAAYDTHMMMRALIELLKNGDTW 331

Query: 178 LSSKEQELWYLDQ---TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           +    ++ + L          G+ V+      L +  +       ++L  +T     +  
Sbjct: 332 MLRNYKKQFPLVYPSLYGAFEGFRVNNETRLKLVEKAEERLESALKDLRIMTDDPEFNPG 391

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVL---SSNKKLTPQAIQV---FNNRMRASRSAV 288
             +++  +L+   G       ++  +      +      P         NN     ++  
Sbjct: 392 SPDQVSEFLYEVLGAKRPPRAKSKSKTDKKSRAFVASQHPIFALFSDRVNNYSLEKKALS 451

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
              +        + RL  +L   G + TGR++                            
Sbjct: 452 TYFS----FRQWNSRLLYSLDPFG-TDTGRFASR-------------------------A 481

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE----- 403
           S       +Q      +      +G      D +  EA   A+++     +KA       
Sbjct: 482 SAAWIGTQIQNQPVYAKEMYEPDDGYIAFEMDFSKAEAICTAYLSRCSALIKALCFPDLD 541

Query: 404 ---TGEDLYVTTYARSFNVAPAQVTKDQRAIG-KVMELALGYQGGAKAFQKMASTTGLNL 459
                +D Y       F++    VTK+ R    K +     Y  G + F           
Sbjct: 542 NEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGPETFIDNLDDIQTLF 601

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                L    +   +    +                        +++  A+      V +
Sbjct: 602 LAAKILGVVLTLNPKAPKEKT------------------PKDFAKQLLDAYHIPFPEVQQ 643

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            W  +      T +    I    R         K      +   S               
Sbjct: 644 WWESIFMEVLTTNKLINPITGHVRYFFGDPRRNKKIQRQAVAHQS-----------QNFS 692

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-AGYDIVLTVHDEIV 633
           ++       + Y Y                    M++        +   +HD +V
Sbjct: 693 VDNLNTGYLKAYQY--------------------MLSLEDPRILRLKTQIHDSLV 727


>gi|71402991|ref|XP_804342.1| mitochondrial DNA polymerase I protein D [Trypanosoma cruzi strain CL
            Brener]
 gi|70867265|gb|EAN82491.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
            cruzi]
          Length = 1607

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/430 (12%), Positives = 107/430 (24%), Gaps = 94/430 (21%)

Query: 253  DLTETTC------QRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLN------TLVEAM 298
                +T       +  L+  KK      A  +   R    +              +V  +
Sbjct: 1209 KFRSSTTRQLQVGEDSLNYFKKTHGDKTAETILELR-TMEKLIGTYYENTDDGTGMVSLV 1267

Query: 299  NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
            +S             + TGR +      QN+P+  +S                       
Sbjct: 1268 HSVDSCIHHELIHNKTNTGRLASANPNCQNIPKEDKS----------------------- 1304

Query: 359  IISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                 +R   ++  G+K   + AD + +E   LA +A +   L+   +  D +    A  
Sbjct: 1305 ----PLREMFVSRYGEKGMCIEADYSQLEVVALAVLADDFQMLEDLRSNVDFHCKRVAMM 1360

Query: 417  FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
                P     +     K                                        +  
Sbjct: 1361 R---PDLQYTEVLLRAKKN-----------------------------KEPEFVKLRQQA 1388

Query: 477  DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
               +F R         +            + +  R+ +  V       +     +  N  
Sbjct: 1389 KIFSFQRQYGAGVKMISQSTGLTQDQVRNLIEKERETYRGVDAF----NSMVALSANNFD 1444

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            A I    R+V      K    +I     G   V+ +       +   +            
Sbjct: 1445 ASIQDGSRNVRGHQFFKGMFPVIT----GSRYVFTESDVPEGIMREKSMSAKSTNFSPTH 1500

Query: 597  LTENIVQAVSRDI--LAEGMM-------NATKAGYDIVLTVHDEIVCETPDT-DEFNASM 646
            L    VQ  + +I  +  GM+       N       +  TVHD +  +         A  
Sbjct: 1501 LKNYPVQGFAGEIVQIMLGMLWRHFLRNNNYNGLAVLTNTVHDCVWIDCHADIFLQVADE 1560

Query: 647  LYHLMTSNPS 656
            +  +M++   
Sbjct: 1561 VETIMSNVRE 1570



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 92/306 (30%), Gaps = 63/306 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVIL--------------------FAFGFDDHP 41
             L +D ET + +   K     + ++  V+L                     A  +DD  
Sbjct: 498 RYLVLDLETTT-VRRYKRVANPFTKENYVVLSGARDHTGKVFMAGRYFSRNIALRYDDFE 556

Query: 42  VE-LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE-RTVLKACFNLDI--PIHRWICTL 97
           V    D V       +    L++ DV  V HN  F+   + +            +   T+
Sbjct: 557 VTSTCDLVDGSSQHSLFLPPLDDYDVI-VGHNIKFDLLHIWRDAELRRFLSRGGKVWDTM 615

Query: 98  VLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                        G  + L+ + ++    + K++  KE              + + K  +
Sbjct: 616 YAEYLLTGHEVKLGRGAGLEDIAKSYGGQTPKLDAVKE-------------AWAKGKETY 662

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL---------SSKEQELWYLDQTINDRGYCVDV 201
              + L  EY  GD+  T  IF++              +   +       +   G   +V
Sbjct: 663 EIPYALLSEYLHGDLENTELIFRKHMERALLQRQVIICTARMDGLLCTTEMEYNGLKTNV 722

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLV-------SSSRCLEKLKTWLF-LETGLHLED 253
            LA T +  +  +  +L   L+      +        +    + L  + F  +  L+   
Sbjct: 723 QLAVTQSNELMGKVVELRNHLDDAIPKEIPPDCRKYFNWSSNQHLIAFFFGGKLKLNTNA 782

Query: 254 LTETTC 259
               T 
Sbjct: 783 RESKTL 788


>gi|147917349|ref|YP_001218832.1| DNA polymerase [Pseudomonas phage 119X]
          Length = 801

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 64/595 (10%), Positives = 142/595 (23%), Gaps = 122/595 (20%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-LKAVGEALKLSSQK 122
           +D+    HN  ++   L        P +    T+      GL  +    + + +      
Sbjct: 230 SDIPKCFHNGLYDSFHLMRY--HAAPNNWIFDTM------GLSHSWYSELSKDVGFLCSW 281

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE-----IFKRLEP 177
           +    +        E                   + +Y   D  +        +      
Sbjct: 282 LLYDHKEWKYMADREHKAIGG----------IESYWKYAAYDTHMMMRALIELLKNGDIW 331

Query: 178 LSSKEQELWYLDQ---TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           +    ++ + L          G+ V+      L +  +       ++L  +T     +  
Sbjct: 332 MLRNYKKQFPLVYPSLYGAFEGFKVNNETRLKLVEKAEERLESALKDLRIMTDDPEFNPG 391

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVL---SSNKKLTPQAIQV---FNNRMRASRSAV 288
             +++  +L+   G       ++  +      +      P         NN     ++  
Sbjct: 392 SPDQVSEFLYEVLGAKRPPRAKSKSKTDKKSRAFVASQHPIFALFSDRVNNYSLEKKALS 451

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
              +        + RL  +L   G + TGR++                            
Sbjct: 452 TYFS----FRQWNSRLLYSLDPFG-TDTGRFASR-------------------------A 481

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE----- 403
           S       +Q      +      +G      D +  EA   A+++     +KA       
Sbjct: 482 SAAWIGTQIQNQPVYAKEMYEPDDGYIAFEMDFSKAEAICTAYLSRCSALIKALCFPDLD 541

Query: 404 ---TGEDLYVTTYARSFNVAPAQVTKDQRAIG-KVMELALGYQGGAKAFQKMASTTGLNL 459
                +D Y       F++    VTK+ R    K +     Y  G + F           
Sbjct: 542 NEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGPETFIDNLDDIQTLF 601

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                L    +   +    +                        +++  A+      V +
Sbjct: 602 LAAKILGVVLTLNPKAPKEKT------------------PKDFAKQLLDAYHIPFPEVQQ 643

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
            W  +      T +    I    R         K      +   S               
Sbjct: 644 WWESIFMEVLTTNKLINPITGHVRYFFGDPRRNKKIQRQAVAHQS-----------QNFS 692

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA-TKAGYDIVLTVHDEIV 633
           ++       + Y Y                    M++        +   +HD +V
Sbjct: 693 VDNLNTGYLKAYQY--------------------MLSLKDPRILRLKTQIHDSLV 727


>gi|320010013|gb|ADW04863.1| DNA-directed DNA polymerase [Streptomyces flavogriseus ATCC 33331]
          Length = 568

 Score = 87.9 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 66/434 (15%), Positives = 111/434 (25%), Gaps = 138/434 (31%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F + G+ +        + +        P    +     +  R         ++    DGR
Sbjct: 234 FAQAGIKVGSTRRWELEAL------DHPAVEPLIRY-KKLYRVWTAHGWGWLQDWVRDGR 286

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G + +GRW+        +P+                                
Sbjct: 287 FRPGY-QPGGTVSGRWTTNGGGALQIPK-------------------------------V 314

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A EG +LVVAD   +E RVLA ++ ++  ++      DLY     R+F+     
Sbjct: 315 IRRAVVADEGWRLVVADADQMEPRVLAAISRDRGLMEVAGHEGDLYKALSDRAFHGDRD- 373

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                    K+  L   Y            T+G  L   A L                  
Sbjct: 374 -------HAKIALLGAVY----------GQTSGDGLKNLAAL------------------ 398

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                      R++  +       +  A +   E         R
Sbjct: 399 ---------------------------RRRFPQAVAY---VDDAAKAGEEGRLVRTWLGR 428

Query: 544 RDVPLVYMKKDKNNLI----LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
              P V   +D    I       PSG            +Y  T     +     G     
Sbjct: 429 TSPPAVGADEDGEAGIPQESEEPPSG--------EATGTYGFTPGYASSNARARGRFTRN 480

Query: 600 NIVQAVSRDILAE------------GMMNATKAGYDIVLTVHDEIVCETPDTDEFNASML 647
            +VQ  + D                GM        ++V   HDE++   P  +       
Sbjct: 481 FVVQGSAADWALLLLAALRRALAAGGM------RAELVFFQHDEVIVHCPAEEASAV--- 531

Query: 648 YHLMTSNPSWAKGL 661
              +      A  +
Sbjct: 532 VEAIREAGELAGRV 545


>gi|322829428|gb|EFZ32819.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
           cruzi]
          Length = 576

 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/430 (12%), Positives = 107/430 (24%), Gaps = 94/430 (21%)

Query: 253 DLTETTC------QRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLN------TLVEAM 298
               +T       +  L+  KK      A  +   R    +              +V  +
Sbjct: 178 KFRSSTTRQLQVGEDSLNYFKKTHGDKTAETILELR-TMEKLIGTYYENTDDGTGMVSLV 236

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
           +S             + TGR +      QN+P+  +S                       
Sbjct: 237 HSVDSCIHHELIHNKTNTGRLASANPNCQNIPKEDKS----------------------- 273

Query: 359 IISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                +R   ++  G+K   + AD + +E   LA +A +   L+   +  D +    A  
Sbjct: 274 ----PLREMFVSRYGEKGMCIEADYSQLEVVALAVLADDFQMLEDLRSNVDFHCKRVAMM 329

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
               P     +     K                                        +  
Sbjct: 330 R---PDLQYTEVLLRAKKN-----------------------------KEPEFVKLRQQA 357

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
              +F R         +            + +  R+ +  V       +     +  N  
Sbjct: 358 KIFSFQRQYGAGVKMISQSTGLTQDQVRNLIEKERETYRGVDAF----NSMVALSANNFD 413

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
           A I    R+V      K    +I     G   V+ +       +   +            
Sbjct: 414 ASIQDGSRNVRGHQFFKGMFPVIT----GSRYVFTESDVPEGIMREKSLSAKSTNFSPTH 469

Query: 597 LTENIVQAVSRDI--LAEGMM-------NATKAGYDIVLTVHDEIVCETPDT-DEFNASM 646
           L    VQ  + +I  +  GM+       N       +  TVHD +  +         A  
Sbjct: 470 LKNYPVQGFAGEIVQIMLGMLWRHFLRNNNYNGLAVLTNTVHDCVWIDCHADIFLQVADE 529

Query: 647 LYHLMTSNPS 656
           +  +M++   
Sbjct: 530 VETIMSNVRE 539


>gi|58257974|gb|AAW69382.1| DNA polymerase I [Hydrogenothermus marinus]
          Length = 172

 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 1/161 (0%)

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
              LQ I   +R     ++   ++VAD + IE R+ A    +Q  + AF+ G DL+  T 
Sbjct: 1   DPNLQNIPTSLRKLFRPAKNYSMIVADYSQIELRIAAEYTKDQVMINAFKQGLDLHRFTA 60

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA-STTGLNLNTFAHLVKTNSAP 472
           +         +TK++R + K +   L Y    ++  + A S+ G+ ++     +      
Sbjct: 61  SLITGKDYEDITKEERQMAKAINFGLIYGISPRSLMEYASSSYGVEISLKEAQIFHEKFF 120

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
           E ++  + +    +E    H   ++            +   
Sbjct: 121 EHYKGFKKWHEETKEKLKNHREIEVVSLLGRRMKVMKFTDA 161


>gi|50954578|ref|YP_061866.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951060|gb|AAT88761.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 570

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/444 (15%), Positives = 107/444 (24%), Gaps = 133/444 (29%)

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
              L  ++ +       +      L   L    GL +     +T    L       P   
Sbjct: 213 LEDLAAQIRAALDSPDLNPDSPPALLRAL-QRAGLRV----SSTSSWELREL--DHPVIE 265

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            + +   + +R       + +E+   DGR R      G   TGRW+        LP+   
Sbjct: 266 PLLHY-KKLARLLTANGWSWLESWVQDGRFRPDY-VPGGVVTGRWATRGGSALQLPK--- 320

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R  V+A  G KLVVAD A +E R+L  +A 
Sbjct: 321 ----------------------------QLRGAVVADPGWKLVVADAAQLEPRILTGLAQ 352

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +Q    A               +    +     +RA  KV  L   Y             
Sbjct: 353 DQRMAAAGRG---------QDLYTGIVSAGAVTERAQAKVAMLGAMYGA----------- 392

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                                                       +        +A R   
Sbjct: 393 ------------------------------------TTGESGRLMPRLARAFPRAVR--- 413

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                    L +   +  E G+A+ +   R  P                S  S       
Sbjct: 414 ---------LVEEAARAGERGEAVTSHLGRSSP------RPGGSWQETQSAASTAESTPA 458

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY------------ 622
           + R               +G      +VQA + +     M                    
Sbjct: 459 DERRARAQARD-------WGRFTRNFVVQASAAEWALCWMAELRNRLTALAPGRPLTEAP 511

Query: 623 DIVLTVHDEIVCETPDTDEFNASM 646
            +V  +HDE++  TPD        
Sbjct: 512 HLVYFLHDEVIVHTPDALAEAVGE 535


>gi|226308720|ref|YP_002768680.1| DNA polymerase [Rhodococcus erythropolis PR4]
 gi|226187837|dbj|BAH35941.1| putative DNA polymerase [Rhodococcus erythropolis PR4]
          Length = 516

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/397 (13%), Positives = 103/397 (25%), Gaps = 98/397 (24%)

Query: 190 QTINDRGYCVDVALAHTLNQI----------VDVERTKLDQELESLTYGLVSSSRCLEKL 239
             +   G          L +           +     +L  ++  +    V+ S  +E  
Sbjct: 151 AEMTHTGLPFSTQKHRELLEERLGPRPTGYDLPARMQELAAQISEVFGRTVNPSSSVEIT 210

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           +   F   G+ L    +   Q +        P    +  +R   ++         +++  
Sbjct: 211 EA--FGRQGIELPSTRKWFLQEI------DHPAVPLLLRHR-ELAKLYSTNGWQWMDSWV 261

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
              R R  +   G   +GRW+        +P+                            
Sbjct: 262 RGDRFRP-IYVPGGVVSGRWASRGGGALQIPKT--------------------------- 293

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +RS V+A  G   VVAD   +E R+LA M+G++  + A               + +
Sbjct: 294 ----MRSSVVADPGHVFVVADAGQLEPRILAAMSGDRRMMAA---------AGDDDLYAL 340

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
             A+     RA  KV  L + Y   A   + +                     + +  A 
Sbjct: 341 VGAEAFGGDRAKAKVAILGVLYGATAGEAKALLILL----------------RKRFPVAV 384

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
            +     +      +    +G AC               + ++                 
Sbjct: 385 EYVEQAAKAGERGEVVKSLLGRACP----------PPSPDFYSHGDAHAR---------- 424

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
              R     V         + +L   R  +  D    
Sbjct: 425 --GRFTRNFVVQATASEWALCLLADLRRRLAEDPDGE 459


>gi|47934730|gb|AAT39803.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934732|gb|AAT39804.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934734|gb|AAT39805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 51/225 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG-------------------LVSSS 233
              G+ ++ A A  L  ++  +   +  E+ ++                         + 
Sbjct: 1   ERNGFKLNQAAALQLLSVLKTKLDSIQVEMATIFPPIITSGRTHKTSGKPLKDIIEPFNP 60

Query: 234 RCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              +++   L  +     +   + +    + VL+S     P+A       M   +  + +
Sbjct: 61  GSRQQIAERLIEKGWKPTKRTEKGSVIVDEEVLASL--DYPEAKA-LAEYMMLQK-RIAQ 116

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ +EA+  DGR+ G +   GA  TGR +        +P                    
Sbjct: 117 IDSWLEAVGKDGRVHGRVITNGA-VTGRMTHMSPNMAQVP-------------------- 155

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
               +         R      +G KLV  D AG+E R+LA    +
Sbjct: 156 ----NSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMND 196


>gi|47934726|gb|AAT39801.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 201

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG-------------------LVSSS 233
              G+ ++ A A  L  ++  +   +  E+ ++                         + 
Sbjct: 1   ERNGFKLNQAAALQLLSVLKTKLDSIQVEMATIFPPIITSGRTHKTSGKPLKDIIEPFNP 60

Query: 234 RCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              +++   L  +     +   + +    + VL+S     P+A       M   +  + +
Sbjct: 61  GSRQQIAERLIEKGWKPTKRTEKGSVIVDEEVLASL--DYPEAKA-LAEYMMLQK-RIAQ 116

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ +EA+  DGR+ G +   GA  TGR +        +P                    
Sbjct: 117 IDSWLEAVGKDGRVHGRVITNGA-VTGRMTHMSPNMAQVP-------------------- 155

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               +         R      +G KLV  D AG+E R+LA    +Q
Sbjct: 156 ----NSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDQ 197


>gi|37956877|gb|AAP34143.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/474 (10%), Positives = 105/474 (22%), Gaps = 130/474 (27%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQ---AIQVFNNR 280
             +V +    + ++  L     +  +   +        VL   +   P+   AI +    
Sbjct: 330 EHVVFNPSSRDHIQKKLQETGWIPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389

Query: 281 MRASR---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSH 336
           +   +    +       +  +  DG++ G++   GA  TGR +        +P   S   
Sbjct: 390 LMIQKRIGQSSEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIPGVRSPYG 448

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           E+                 P                       D +G+E R LA      
Sbjct: 449 EQCRAAFGAEHHLDGITGKP-----------------WVQAGIDASGLELRCLAHF---- 487

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +  F+ GE  +                   R   K       Y  G +          
Sbjct: 488 --MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDEKI-------- 537

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                                          + +KK + +    
Sbjct: 538 ------------------------------------GQIVGAGKERGKELKKKFLENTPA 561

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           ++ L   + Q   ++ +        K +               +    GR +  R     
Sbjct: 562 IAALRESIQQTLVESSQWVAGEQQVKWKRR------------WIKGLDGRKVHVRSPHA- 608

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDI-------- 624
                                   ++Q+    I    ++       + G           
Sbjct: 609 --------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAY 648

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
           +  VHDEI       +      +  +      W          L  EG     +
Sbjct: 649 MAWVHDEIQVGCRTEEIAQV--VIEIAQEAMRWVGDHWNFRCLLDTEGKMGPNW 700


>gi|290958457|ref|YP_003489639.1| DNA polymerase I [Streptomyces scabiei 87.22]
 gi|260647983|emb|CBG71088.1| putative DNA polymerase I [Streptomyces scabiei 87.22]
          Length = 571

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 68/476 (14%), Positives = 117/476 (24%), Gaps = 125/476 (26%)

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL-- 243
             +   +N  G      +   + + +  ER     E   L       S    +       
Sbjct: 167 MLVAAEMNRAGLPWRPDVHREVLRELLGERYAGGGEPRRLAELAEEVSNAFGRRVRPDLP 226

Query: 244 ------FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
                 F   G+ ++       + V        P    +     +  R  V    + ++ 
Sbjct: 227 ADVVKAFARAGVRVKSTRRWEIESV------DHPAVKPLLEY-KKLYRIWVAHGWSWLQD 279

Query: 298 MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPL 357
              DGR R      G + TGRW         +P+                          
Sbjct: 280 WVRDGRFRPEFLAHG-TVTGRWVTNGGGALQIPK-------------------------- 312

Query: 358 QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSF 417
                 +R   +A  G +LVVAD   +E RVLA ++ +   +       DLY        
Sbjct: 313 -----VIRRACVADPGWRLVVADADQMEPRVLAAISRDPGLMDVAGRPGDLYQAVS---- 363

Query: 418 NVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWED 477
                +     R   K+  L   Y            T+G  L   A L            
Sbjct: 364 ----DRAFSGDREQAKLAVLGAVY----------GQTSGDGLKNLAAL------------ 397

Query: 478 AENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA 537
                                            R++        ++      +  E G+ 
Sbjct: 398 ---------------------------------RRRFPHAVRYVDD----AARAGEEGRL 420

Query: 538 IIARKRRDVPLVYMKKDKNNLILMLPS-----GRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           +     R  P      D       +P      G     R  G    ++       +R   
Sbjct: 421 VRTWLGRTCPPAAGDPDAAGEEAGIPQADDGPGAPEQGRGQGQETEWVPGYASTDSRAR- 479

Query: 593 YGGKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNA 644
            G      +VQ  + D     +            ++V   HDE++   P  +    
Sbjct: 480 -GRFARNFVVQGSAADWTLLLLAALRRTLDGMAAELVFFQHDEVIVHCPAAETDAV 534


>gi|229819538|ref|YP_002881064.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333]
 gi|229565451|gb|ACQ79302.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333]
          Length = 585

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/432 (14%), Positives = 106/432 (24%), Gaps = 130/432 (30%)

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
              L  ++         +      L   L   +GL +   ++          +   P   
Sbjct: 220 LEALAAQVRDALDVPTLNPDSQPDLLRAL-RRSGLDVTSTSKW------ELQRSEHPAVA 272

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +     +  R         ++   +DGR R      G   TGRW+        LP+   
Sbjct: 273 PLLEY-KKLYRLLSANGWAWMDQWVTDGRFRAE-WVPGGVVTGRWATRGGGALQLPKG-- 328

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +RS V A +G  LV+AD A +E R+LA M+G
Sbjct: 329 -----------------------------IRSAVRADDGWLLVIADAAQLEPRILAAMSG 359

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +   + A   G+       A            D RA  KV  LA  Y             
Sbjct: 360 DDAMVAAGARGDLYAGLVEAGVV---------DTRAHAKVAMLAALYGATTG-------- 402

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                      +        +  A               +   ++G +     +AW    
Sbjct: 403 --------QAAMLVPRLARAYPRAVGLVDAAARVGENGGVVSTWLGRSSVPPGEAWH--- 451

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                       A +       A    +RR                              
Sbjct: 452 ------------AAQSAASAPDATPDDERR------------------------------ 469

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY---------DIV 625
                        +R   +G      +VQ  + +     M    +             + 
Sbjct: 470 -----------ARSRARDWGRFTRNFVVQGTAAEWALCWMAALRRRLASLEGDAGVPRLA 518

Query: 626 LTVHDEIVCETP 637
             +HDE++  TP
Sbjct: 519 FFLHDELIVHTP 530


>gi|170781985|ref|YP_001710317.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156553|emb|CAQ01704.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 592

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 85/583 (14%), Positives = 137/583 (23%), Gaps = 146/583 (25%)

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           W  T V AR+        A    L+LS   +       A           +D   P  RE
Sbjct: 88  WDDTAVWARTLIAAGVRVARCHDLRLSHAILRL-STQTADSALARLPAGPWDAAAPAERE 146

Query: 153 AWRLFGEYCKGDV---------TVTREIF----------KRLEPLSSKEQELWYLDQTIN 193
                  +   D               +            RL  L + E     +   ++
Sbjct: 147 PSASATLFDDLDASDGRSPDELVAELRLQLEAIAGSAESGRLRLLLAAESAGALVAAEMS 206

Query: 194 DRGYCVDVALAHTLNQIVDV----------ERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
             G   D A+   L   +               +L   +  +      +      +   L
Sbjct: 207 ADGLPWDTAVHDALLVDLLGGRPAHSGAPPALLRLAARIREILAAPDLNVDSPPDVLRAL 266

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
               G+      +   Q +        P    +  +  + SR       T +E    DGR
Sbjct: 267 -RRAGVDASSTRQWELQEI------DHPVIAPLLEH-KKLSRLLTANGWTWMETWIRDGR 318

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
                   G   TGRW+        LPR                                
Sbjct: 319 FHPEY-VPGGVVTGRWAASGGGALQLPR-------------------------------Q 346

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +RS V A  G +LVVAD A +E RVLA ++ ++    A    +       A         
Sbjct: 347 IRSAVRADPGWRLVVADAAQLEPRVLAALSEDRAMADAGRGTDLYQGLVDAGVV------ 400

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
              D RA  KV  L   Y   +                             +  A  +  
Sbjct: 401 ---DTRAHAKVAMLGAMYGATSG----------------ESGRLMPRLVRAYPRATGYVE 441

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                     +    +G +      AW      V ++      +         +   + R
Sbjct: 442 RAARAGESGGVVSTRLGRSSPPPGDAWVD----VQQIGRAGEASPSDAARARTSARDQGR 497

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                V         +  L   R                                     
Sbjct: 498 FTRNFVVQGSAAEWALCWLAGLRRR----------------------------------- 522

Query: 604 AVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDTDEFNA 644
            ++            + G    +V  +HDE++  TPD      
Sbjct: 523 -LAA---------LERPGSRPHLVFFLHDEVMVHTPDDRVDEV 555


>gi|229488378|ref|ZP_04382244.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
 gi|229323882|gb|EEN89637.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121]
          Length = 520

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 97/367 (26%), Gaps = 88/367 (23%)

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
            +     +L  ++  +    V+ S  +E  +   F   G+ L    +   Q +       
Sbjct: 181 DLPARMQELAAQISEVFGRTVNPSSSVEITEA--FGRQGIELPSTRKWFLQEI------D 232

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P    +  +R   ++         +++     R R  +   G   +GRW+        +
Sbjct: 233 HPAVPLLLRHR-ELAKLYSTNGWQWMDSWVRGDRFRP-IYVPGGVVSGRWASRGGGALQI 290

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P+                                +RS V+A  G   VVAD   +E R+L
Sbjct: 291 PKT-------------------------------MRSSVVADPGHVFVVADAGQLEPRIL 319

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A M+G++  + A               + +  A+     RA  KV  L + Y   A    
Sbjct: 320 AAMSGDRRMMAA---------AGDDDLYALVGAEAFGGDRAKAKVAILGVLYGATAG--- 367

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                                  + +  A  +     +      +    +G AC      
Sbjct: 368 -------------EAKALLVLLRKRFPVAVEYVEQAAKAGERGEVVKSLLGRACP----- 409

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                    + ++                    R     V         + +L   R  +
Sbjct: 410 -----PPSPDFYSHGDAHAR------------GRFTRNFVVQATASEWALCLLADLRRRL 452

Query: 570 YRDVGNN 576
             D    
Sbjct: 453 AEDPDGE 459


>gi|47934708|gb|AAT39792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVKFKKKTEKGNVIVDEKVLNSIDLPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG +LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDED 197


>gi|2982125|pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
           Nucleoside Triphosphate, And Its Processivity Factor
           Thioredoxin
 gi|50513551|pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE AND
           DDATP
 gi|50513555|pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template
 gi|50513559|pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template
 gi|50513563|pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template And An Incoming Nucleotide
 gi|50513565|pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
           Dimer On The Template And An Incoming Nucleotide
 gi|50513571|pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template
 gi|50513575|pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
           PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
           Template And An Incoming Nucleotide
 gi|52695798|pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Ddctp At The Insertion Site
 gi|52695802|pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
           The Templating Strand
 gi|52695806|pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Damp At The Elongation Site
 gi|52695810|pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
           Dcmp At The Elongation Site
 gi|56553842|pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The
           Insertion Site.
 gi|56554410|pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2-
           Acetylaminofluorene-Adducted Dna
 gi|56554414|pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
           Containing A Disordered N-2 Aminofluorene On The
           Template, Crystallized With Dideoxy-Ctp As The Incoming
           Nucleotide.
 gi|56554418|pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
           Containing A Disordered N-2 Aminofluorene On The
           Template, Crystallized With Dideoxy-Atp As The Incoming
           Nucleotide
          Length = 698

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 78/691 (11%), Positives = 160/691 (23%), Gaps = 135/691 (19%)

Query: 67  TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNG--------------- 104
            IV HN   ++   L             +P    I TLVL+R                  
Sbjct: 55  LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGK 114

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           LP AL+A G  L     + ++  + +      E  + +   N            +Y   D
Sbjct: 115 LPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMMDYNVQD 168

Query: 165 VTVTREI-------------------------FKRLEPLSSKEQELWYLDQTINDRGYCV 199
           V VT+ +                         +         E    +L       G+  
Sbjct: 169 VVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFPF 228

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED----LT 255
           D      L   +   R++L ++L              E         TG  L       T
Sbjct: 229 DTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMF---CHPRTGKPLPKYPRIKT 285

Query: 256 ETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                  ++  +  ++   +  +  + R   + +    +  +V   +S   ++  LQ  G
Sbjct: 286 PKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQEAG 344

Query: 313 A-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                 +  G         + +       +    +I              +     +R  
Sbjct: 345 WVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLR-- 402

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYARSFNVA 420
            +A +GK     +  G              ++    +                       
Sbjct: 403 YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKP 462

Query: 421 PAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
             Q   D       +EL  L +        + A           + +       +     
Sbjct: 463 WVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTF 518

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
            +         +            + +KK + +    ++ L   + Q   ++ +      
Sbjct: 519 IYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQ 578

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             K +               +    GR +  R                            
Sbjct: 579 QVKWKRR------------WIKGLDGRKVHVRSPHA---------------------ALN 605

Query: 600 NIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNASML 647
            ++Q+    I    ++       + G           +  VHDEI       +      +
Sbjct: 606 TLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQV--V 663

Query: 648 YHLMTSNPSWAKG-----LPLKAEGYESKRY 673
                    W          L  EG     +
Sbjct: 664 IETAQEAMRWVGDHWNFRCLLDTEGKMGPNW 694


>gi|228969098|ref|ZP_04130012.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228790587|gb|EEM38274.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 388

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/380 (13%), Positives = 104/380 (27%), Gaps = 70/380 (18%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------------PVMPQVL 57
            + ID    G   + +   +I    GF D+                           + L
Sbjct: 10  YTFIDTKSTGSNPFKDS--IISITIGFMDNSFFYIPIKPFKHRLSQNISTLSLEYTMKKL 67

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              LE  D  ++  NS      L    N DI  + +  T + A         K V E  K
Sbjct: 68  SPLLE-KDTLLILSNSKQHIHALYNWCNFDITYNIFWDTEIAANLLNENHP-KGVKEWYK 125

Query: 118 --LSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE---------AWRLFGEYCKGDVT 166
             +  + + +G  L     K    E        +H             +   EY K    
Sbjct: 126 EYVLPRLISKGTILNTMDSKKYMFEKTLYDQLQHHVATYFACYDIFMLKSVFEYQKRIFE 185

Query: 167 VT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT-LNQIVDVERTKLDQELES 224
                +    +     E  L  +  T   +G  ++       + QI+  +   + +E+ +
Sbjct: 186 NPKFNLVHIYKLFREIEMPLIAVLTTAERKGIKINEEFLSNDVKQILQAKLQSVKKEILN 245

Query: 225 LTYGLV-------------------------SSSRCLEKLKTWLFLETGL-----HLEDL 254
                +                          +      L   L+++  +       +  
Sbjct: 246 HLGSTITLNNCMHPPKQQNKYNSVNKLTSTLFNINSPAHLAQKLYIDNAILKPIMEYDKG 305

Query: 255 TET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM--NSDGRLRG 306
            ++      T ++ L  N  + P    +   R    +      N+L +      D ++  
Sbjct: 306 CKSLISKLKTDRKTLIRNLSMHPVIPLILEYRR-LVKLISSFCNSLPKEQQGTIDNKIHP 364

Query: 307 TLQFLGASRTGRWSGCVFPP 326
               +G ++TGR S      
Sbjct: 365 IYNSVG-TKTGRMSCSSPNL 383


>gi|282554654|ref|YP_003347671.1| DNA polymerase [Klebsiella phage KP34]
 gi|262410487|gb|ACY66751.1| DNA polymerase [Klebsiella phage KP34]
          Length = 786

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/579 (11%), Positives = 142/579 (24%), Gaps = 114/579 (19%)

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND---RGYC 198
            Y +  P     +  +  Y   DV  T +     +                N    + + 
Sbjct: 273 KYRKKVPYDPPQYVKYDAYLA-DVNGTLQYIDVSDWQPEWTYPRTLYKSGKNKGLPKVFR 331

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
           +D      L    D+        ++ L   +        + +    L+ G  +     +T
Sbjct: 332 LDTE-EKKLKWEDDLYFCPGLVNIQELPEVIREKYAERGEFRQARALQDGTPV----YST 386

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAM---NSD 301
               + +  +   +  ++ N      +                    + +++ +   N D
Sbjct: 387 STDAMEALARQGFEFCRLVNELGALEKDTGTYYLRTEYNEDGSVKKTSGMLQYVIPQNPD 446

Query: 302 G-RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           G  +        A+ TGR SG     QNLPR                             
Sbjct: 447 GSGIIHHRLNTCATVTGRLSGSNPNLQNLPRDG--------------------------- 479

Query: 361 SDCVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
           +  V+    +  G+  ++   D + +E  +     G++  L   + G D++    A    
Sbjct: 480 TSRVKQMFTSRFGESGRITEVDYSALEVVMGCVHTGDRKLLSLLQAGTDMHCYRLAFKEG 539

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
               ++  D        +                              K           
Sbjct: 540 KTYEEMY-DLCHNADGPDY-----------------------------KYWKQQRTDIKP 569

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
            +F           A          +       +           + +  E+T   G+  
Sbjct: 570 PSFAAQYGATAKGIAFATGCTVEYAQSFLDNEAKLFPDTIGFRAVVKEEVERTGAEGR-- 627

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                R+       +         P+G    +R        +    R+         ++ 
Sbjct: 628 ---LYREQADDGSYRVYRIGTWTSPAGARYSFRQ-KEQWKEVVPEQRKQKVMDYKETEMA 683

Query: 599 ENIVQA-------VSRDILAEGMMNAT--KAGYDIVLTVHDEIVCET--PDTDEFNASML 647
               Q        V+  ++   ++          ++  VHD +  ++  P+     + ++
Sbjct: 684 NYWCQGEAFFLMAVAAGMVLRALLARDWFDNQVCLITNVHDALYLDSANPEVGREASLLV 743

Query: 648 YHLMTSNPS-----W-----AKGLPLKAEGYESKR-YRK 675
              M   P      W        +P  AE       Y K
Sbjct: 744 KQCMEDAPKRIHQLWPNYGIIGEVPFPAEAEMGTSMYSK 782


>gi|56752739|gb|AAW24581.1| SJCHGC05886 protein [Schistosoma japonicum]
          Length = 191

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 62/198 (31%), Gaps = 28/198 (14%)

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                A +      + +++   +   ++ + +          +  E     +    R +P
Sbjct: 2   GCHTLASQLNISEKSAQKLIDGFLNIYTGIQKFITTTVSTAHR--EGQIKTLNGHIRLLP 59

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT-RQLTREYTYGGKLTENIVQAVS 606
            +  K   + +     S           ++   N     +  R+         +I+Q  +
Sbjct: 60  ALNSKSIFSCVSANEFS--------CNWSKKQRNHFAVTKAERQA------VNSIIQGSA 105

Query: 607 RDILAEGMMNATKAG--------YDIVLTVHDEIVCET-PDTDEFNASMLYHL-MTSNPS 656
            +I    M+   +A           +VL  HDE++ E  P++      +L    M+S   
Sbjct: 106 AEIAKLAMLAVDEAISSANIPGYARLVLHEHDELIYEIFPESSVKQFGVLIRQAMSSTGK 165

Query: 657 WAK-GLPLKAEGYESKRY 673
           +    +PL  +      +
Sbjct: 166 YCNINVPLPVKLKIGPNW 183


>gi|220913904|ref|YP_002489213.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
 gi|219860782|gb|ACL41124.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
          Length = 590

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/453 (13%), Positives = 106/453 (23%), Gaps = 142/453 (31%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
                L  EL  L      +    ++L   L    G+ +    ++T +  L       P 
Sbjct: 232 ARLEALAAELRRLLGSPALNPDSPQELIRALH-RNGIEV----KSTSKWELKDLP--HPV 284

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +     + SR       + ++A  + GR R     +G   +GRW+        +PR 
Sbjct: 285 IGPLLEY-KKLSRLHTANGWSWLDAWVAGGRFRPEY-VVGGVVSGRWASRGGGALQIPR- 341

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          VR  V A  G KL+VAD + +E RVL  +
Sbjct: 342 ------------------------------QVRGAVHADPGYKLIVADASQLEPRVLVAL 371

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A +    +A    +                      RA  KV  L   Y   +       
Sbjct: 372 ARDSVMAEAARDQDLYAGIAAKGFGG---------DRAKAKVALLGAMYGATSG------ 416

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                                 +  A +F                 +G +     + W Q
Sbjct: 417 ----------ESGRLMPQLARTYPRAVDFVEQAARAGEAGGTVTTRLGRSSPPPSERWYQ 466

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                        ++     E  +A    + R                            
Sbjct: 467 S-----------QRSA-TAEEQRRAESIARSRGRFTRNF--------------------- 493

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---------------- 616
                                       +VQ  + D  A  +                  
Sbjct: 494 ----------------------------VVQGSAADWAACWLAELRRRLRSLRAHGTGAG 525

Query: 617 ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
              AG ++V  +HDE++   P            
Sbjct: 526 PGGAGPELVFFLHDEVMVHAPAGAVDECIRAIE 558


>gi|332800714|emb|CBY88554.1| hypothetical protein [Pantoea phage LIMEzero]
          Length = 814

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/449 (12%), Positives = 105/449 (23%), Gaps = 92/449 (20%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAMNSDG 302
           +T   VL +        +     R +A +                    + +++ +  DG
Sbjct: 402 STAGDVLEALAARKIPGVVEIAARAKAQKDLGTYYLIEEEDEEGNVIGQSGMMQFIQPDG 461

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            +  ++  + ++ T R S      QNLPR                             + 
Sbjct: 462 VVHHSIN-MTSTETTRLSSSRPNSQNLPRKG---------------------------TS 493

Query: 363 CVRSCVIASEG--KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
            V+    +  G   K+  AD + +E         ++   +A   G D++    ++  N  
Sbjct: 494 KVKQMFTSRFGGEGKICEADYSALEVVGQCGFTKDKNLTQALLDGTDMHCMRLSQQLNED 553

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
              V                                   +      K           + 
Sbjct: 554 YESV-----------------------------LLKAKKDESHPDHKRYDEMRTAIKPKA 584

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF--EQTIENGKAI 538
           F           A          +    + +     V + ++E+           N    
Sbjct: 585 FSYQYGATAMGIAYSTGCSVEEAQAFIDSEKALFPDVEKWYDEVITPIVERNGKSNRFKE 644

Query: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
                R V                 S R     D     + +     Q+      G    
Sbjct: 645 QDENGRWVSYCRGHWQSPGGTCY--SFRQHEKWDRDARAAVMMYKPTQMRNYPIQGETA- 701

Query: 599 ENIVQAVSRDILAEGMMNAT--KAGYDIVLTVHDEIVCET-PDTDEFNASMLYHLMTSNP 655
              VQ +   +L   ++           +  VHD    +  PD        L  +M   P
Sbjct: 702 -FWVQGIGG-LLFRWLLANDFFDGKAVPINQVHDAFYFDCAPDCPHEFFVGLKAIMECIP 759

Query: 656 SWA--------KGLPLKAEGYESKR-YRK 675
            +           +P  AE       Y K
Sbjct: 760 EYYNHVWPEYNLHVPFPAEVEVGPSMYSK 788



 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 52/220 (23%), Gaps = 41/220 (18%)

Query: 67  TIVAHNSYFERTVLKACFNLDI-----PIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            IVAHN+ +E +     +  ++        R  CT                         
Sbjct: 74  IIVAHNAPYELSWWWCHYQDELIPFLKRGGRIFCTAYAEYLL------------THQQEL 121

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYC---KGDVTVTREIFKRLE 176
                +  I      +               +    L  EY     GD+  T  +F    
Sbjct: 122 YPALNEVAIKYGGTHKVDAVKAMWQAGYLTSQIDQELLSEYLSGPSGDIANTMRVFTGQW 181

Query: 177 PLSSKEQELWYLDQTIN---------DRGYCVDVALAHTLNQIVDVERTKLDQEL----- 222
               K+  L      +            G  VD  +A    Q +  +  +L  EL     
Sbjct: 182 AALQKQGMLKMALTRMEGMLMWTYMMYSGLYVDRDVAEQNRQELVKDIDRLTDELRGYLP 241

Query: 223 --ESLTYGLVSSSRCLEKLKTWLF---LETGLHLEDLTET 257
                             +  ++F   ++    +E     
Sbjct: 242 ADMPQAAREQFKFSSAYHMSAFVFGGVMKYKDKVERTDAD 281


>gi|83753886|pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
          Length = 698

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 78/691 (11%), Positives = 159/691 (23%), Gaps = 135/691 (19%)

Query: 67  TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNG--------------- 104
            IV HN   ++   L             +P    I TLVL+R                  
Sbjct: 55  LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGK 114

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           LP AL+A G  L     + ++  + +      E  + +   N            +Y   D
Sbjct: 115 LPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMMDYNVQD 168

Query: 165 VTVTREI-------------------------FKRLEPLSSKEQELWYLDQTINDRGYCV 199
           V VT+ +                         +         E    +L       G+  
Sbjct: 169 VVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFPF 228

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED----LT 255
           D      L   +   R++L ++L              E         TG  L       T
Sbjct: 229 DTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMF---CHPRTGKPLPKYPRIKT 285

Query: 256 ETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
                  ++  +  ++   +  +  + R   + +    +  +V   +S   ++  LQ  G
Sbjct: 286 PKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQEAG 344

Query: 313 A-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
                 +  G         + +       +    +I              +     +R  
Sbjct: 345 WVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLR-- 402

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYARSFNVA 420
            +A +GK     +  G              ++    +                       
Sbjct: 403 YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKP 462

Query: 421 PAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
             Q   D       +EL  L +        + A           + +       +     
Sbjct: 463 WVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTF 518

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
            +                      + +KK + +    ++ L   + Q   ++ +      
Sbjct: 519 IYGFLYGAGDEAIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQ 578

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
             K +               +    GR +  R                            
Sbjct: 579 QVKWKRR------------WIKGLDGRKVHVRSPHA---------------------ALN 605

Query: 600 NIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNASML 647
            ++Q+    I    ++       + G           +  VHDEI       +      +
Sbjct: 606 TLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQV--V 663

Query: 648 YHLMTSNPSWAKG-----LPLKAEGYESKRY 673
                    W          L  EG     +
Sbjct: 664 IETAQEAMRWVGDHWNFRCLLDTEGKMGPNW 694


>gi|156101137|ref|XP_001616262.1| DNA polymerase 1 [Plasmodium vivax SaI-1]
 gi|148805136|gb|EDL46535.1| DNA polymerase 1, putative [Plasmodium vivax]
          Length = 1221

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/383 (11%), Positives = 100/383 (26%), Gaps = 86/383 (22%)

Query: 277  FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRP--- 332
                  + +     +  L + +  +  ++      +GA  TGR S      QN+      
Sbjct: 795  VKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQIGA-STGRLSCEQPNLQNIHSRFRC 853

Query: 333  --------------------SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
                                  +    ++    +  +  +  +     +          +
Sbjct: 854  AVSLKGGEVGGEERGSGERGIANQCSANRGSVEVGGNNLTTAENPPPANFTCEGA--PPD 911

Query: 373  GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
            G+ L+  D   +E  V+A+++ +   LK  ++G+    T           QVT + R + 
Sbjct: 912  GENLITFDYKQMELFVMAYLSFDVQLLKMLQSGDVFVETAKVLFNTT---QVTSELRRMT 968

Query: 433  KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
            K +   + Y               L ++        ++  + + +   F +  +      
Sbjct: 969  KTVIYGILYGQTENGL-----AKSLLISEGMASNLISNFFQVFPNVYRFMQMQKILLKHM 1023

Query: 493  AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                  IG   +RV +        +           +  I     I       +    + 
Sbjct: 1024 NRVYTLIGR--KRVIE------PTIKN---------KYRISMNTPIQGCAADVMKFALLS 1066

Query: 553  KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                       S R L   +V       N    + T                        
Sbjct: 1067 CFCIMTHGWPQSARLLKINNVSAAVLEENKPFLKAT------------------------ 1102

Query: 613  GMMNATKAGYDIVLTVHDEIVCE 635
                       ++L VHDE++ E
Sbjct: 1103 ----------KLILQVHDELLFE 1115


>gi|258655373|ref|YP_003204529.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233]
 gi|258558598|gb|ACV81540.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233]
          Length = 550

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 61/441 (13%), Positives = 104/441 (23%), Gaps = 130/441 (29%)

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
              L  E+       V+    ++      F   G  +E       + +        P   
Sbjct: 202 LAALADEISQAFGFPVNPDSAVDVRAA--FRRVGFDIESTRSWVIKAI------DHPAVR 253

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            V        R         +E      R        GA  +GRW+        +PR   
Sbjct: 254 PVLAY-KELVRLHTANGWAWLEQWVRGNRFHAEY-LSGAVVSGRWATRGGGALQIPR--- 308

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                        +R  V+A  G +L+VAD A +E RVLA ++ 
Sbjct: 309 ----------------------------VLRQAVVADPGYRLIVADAAQLEPRVLAAISA 340

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
           +                               +      +     G    A     + + 
Sbjct: 341 DLVLQAISA-----------------------EDDLYAGLAADGFGGNRAAAKVAMLGAM 377

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G                                                R+    R ++
Sbjct: 378 YGQ-----------------------------------------TTGEGGRLVSTLRARY 396

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
            +             +  E G+ + +   R  P               P G S     +G
Sbjct: 397 PQAMGY----VDGAARAGERGEVVHSVLGRACP---------------PPGTSWEAVRIG 437

Query: 575 NNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNA-----TKAGYDIVLTV 628
             +           R     G+ T   +VQA + D  A  +          AG ++V   
Sbjct: 438 RQQDATPAERTLADRLAGDRGRFTRNFVVQASAADWAAVWLAGLRTSLTEVAGAELVFFQ 497

Query: 629 HDEIVCETPDTDEFNASMLYH 649
           HDE++   P+      + L  
Sbjct: 498 HDELIVHAPEPVAEPVAGLIE 518


>gi|47934720|gb|AAT39798.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+                      V +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLTFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V     +   +       R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197


>gi|47934704|gb|AAT39790.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934706|gb|AAT39791.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934746|gb|AAT39811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG +LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDED 197


>gi|326424982|ref|YP_004286204.1| putative DNA polymerase [Pseudomonas phage phi15]
 gi|325048386|emb|CBZ41999.1| putative DNA polymerase [Pseudomonas phage phi15]
          Length = 722

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 83/741 (11%), Positives = 185/741 (24%), Gaps = 162/741 (21%)

Query: 44  LWDCVHDPVMPQVLKEALE----NTDVTIVAHN-SYFERTVLKA------CFNLDIPIHR 92
           +++      +   +K ALE      D  IV HN   ++   L          NL+IP  +
Sbjct: 31  VFEGYRPDNVLDYIK-ALEAEAAKPDGLIVFHNGIKYDIPALAKIKKSLTGKNLNIPRQK 89

Query: 93  WICTLVLARSNGL---------------------PSALKAVGEALK--LSSQKMEEGKEL 129
            + TLVL+R                           +L+A G  L       K +  ++L
Sbjct: 90  VLDTLVLSRLLHANLKNTDAGLLRKGILPGDRYGSHSLEAWGYRLGEMKGEYKDDFKRDL 149

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE------- 182
            AR             N+P +         YC+ DV VT ++ ++               
Sbjct: 150 AARGETYVDGMEWEHFNEPMYD--------YCEQDVRVTLKLLRKFLADKFYFGSDVAPN 201

Query: 183 --------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
                          E  +    +   G+  +   A  L Q +  ER+ L  +L      
Sbjct: 202 GEQWMGGIRAVRLEHEAAWTLAQMERNGFPFNKQKAERLYQELAAERSDLLVKLIETFGT 261

Query: 229 LVSSSRCLEKLKTWLFLETG-----LHLEDLTET--------TCQRVLSSNKKLTPQAIQ 275
                   +  + +L  +TG       +    ++          ++     K+ +P    
Sbjct: 262 ---WWAPTKGTEPFLHPKTGKVLSKYPMVKRAKSGNADGHCGKTKKNPKGVKEKSPYVAG 318

Query: 276 VFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                +     +    + + + +   G         GA      +       + P    +
Sbjct: 319 CIYTPIEHITFSPTSRDHIQKVLKDAGWEPTEFTDKGAPIVDDETLEGVTVDD-PVKQAA 377

Query: 336 HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
              + + +                +  C        +G      +  G            
Sbjct: 378 ITLIQRYLMIQKRIGQLAEGKKAWLLYC-----ETEDGFIHGSINPNGAGTGRATHSHPN 432

Query: 396 QWKLKAFETGEDLYVTT---YARSFNVAPAQVTKDQRAIGKVME------LALGYQGGA- 445
             ++ + ++            A + ++   +           +E          + GGA 
Sbjct: 433 MGQVPSAKSPYGPECRELFGAAYASHLPGWEAVVQVGRDASGLELRCLGHFGAKFDGGAY 492

Query: 446 -----KAFQKMASTTGLNLNTFAHLVKTNSAPEEW---EDAENFCRWMQENHPEHAIEDL 497
                      A+     +      +K +   + W        +       + +      
Sbjct: 493 VEQVLNGDVHWANAVAAGIAKDPVRIKGDEQHDRWRDNAKTFIYAFLYGAGNGKIGQIVG 552

Query: 498 FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
              +  + +KK++ +    +  L + L +A     +                        
Sbjct: 553 GGESHGKALKKSFLENTPVIKSLSDSLIEALVAEQKWNNVTK----------RFDLKWKR 602

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN- 616
             +    GR +  R   +                         ++Q     I    ++  
Sbjct: 603 KWIKGLDGRMVHIRSPHS---------------------ALNFLLQGAGAVICKAWVVET 641

Query: 617 --------ATKAGYD---------IVLTVHDEIVCETPDTDEFNA------SMLYHLMTS 653
                        Y           +  VHDE+     + +            + ++   
Sbjct: 642 ERLLMEQGLHHGWYREDGTPGDFCFMAWVHDELQIAARNPEIAEVVHAACQQAIRNI--- 698

Query: 654 NPSWAKGLPLKAEGYESKRYR 674
              +     L  EG+    +R
Sbjct: 699 GEEFGIRCQLDTEGHTGPTWR 719


>gi|119637765|ref|YP_919001.1| DNA polymerase [Yersinia phage Berlin]
 gi|119391796|emb|CAJ70669.1| hypothetical protein [Yersinia phage Berlin]
          Length = 704

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/477 (12%), Positives = 108/477 (22%), Gaps = 136/477 (28%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             +V +    + +   L     +               VL   K   P A +        
Sbjct: 330 EHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEY 389

Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSH 336
                         N  +  +  DGR+ G++   GA  TGR +        +P   +   
Sbjct: 390 LMIQKRVGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVPSIRAAYG 448

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           E                PDP                    V  D +G+E R L       
Sbjct: 449 EPCRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRY 491

Query: 397 WKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
            + +  ET     + T  +    +             K       Y  GA          
Sbjct: 492 DEGEYVETILTGDIHTKNQMAAGLPTRDN-------AKTFIYGFLYGAGAAKI------- 537

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                                           +R+ K + ++  
Sbjct: 538 -------------------------------------GQIVGGTSEDGKRLIKNFLEQTP 560

Query: 516 RVSELWNELHQAFEQTIE--NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
            ++ L   +  A  +  +   G+  +  KRR V  +               GR +  R  
Sbjct: 561 AIAALREAITGALVKDSKWVGGEQKVTWKRRWVRGL--------------DGRKVHVRSP 606

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYD------ 623
                                      ++Q+    I    ++       + GY       
Sbjct: 607 HA---------------------ALNTLLQSAGALICKLWIVKTEEMLLEMGYKHGWDGD 645

Query: 624 --IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
             ++  +HDE        +   A ++  +      W          L  EG     +
Sbjct: 646 FCLMGWIHDEQQLACRTEEI--AKVVIEVSQQAMRWVGDHFNFRCQLDTEGKMGPNW 700


>gi|47934698|gb|AAT39787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 49/230 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D  L H L         +++ +L++L                      V +  
Sbjct: 1   ERNGWLLDQRLCHILCAKFKERMNEIESDLQALFPPIVEERYSEKTGKRLKDKVTVFNVG 60

Query: 235 CLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L  +  +             ++ L  N  + P+A QV    +   +    ++
Sbjct: 61  SRQQVAERLSAKGAVWTELTPTGKPMVDEKTLKENSHV-PEAAQVLEY-LLLQKRY-AQV 117

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           N+ +E +  DGR+ G +   GA  TGR +        +P                     
Sbjct: 118 NSWLEHVQDDGRVHGRVTTNGA-VTGRMTHQNPNMAQVPS-------------------- 156

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                     +  R+C I  EG+KLV  D +G+E R+LA   G++     
Sbjct: 157 ----VNSEYGEDCRNCWIVPEGRKLVGVDASGLELRMLAHYMGDEEFTNV 202


>gi|47934744|gb|AAT39810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVKFKKKTEKGNIIVDEKVLNSIDLPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG +LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDED 197


>gi|47934618|gb|AAT39747.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 201

 Score = 85.2 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKXIARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197


>gi|47934724|gb|AAT39800.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+                      V +  
Sbjct: 1   ERNGFKLDVPYAEQLMMDLMFEMNSIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V     +   +       R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197


>gi|37956824|gb|AAP34091.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 76/697 (10%), Positives = 159/697 (22%), Gaps = 141/697 (20%)

Query: 67  TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNGL-------------- 105
            IV HN   ++   L             +P    I TLVL+R                  
Sbjct: 55  LIVFHNGHKYDVPALIKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKNIDMGLLRSGK 114

Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                    AL+A G  L     + ++  + +      E  + +   N            
Sbjct: 115 LPGKRFGSHALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMM 168

Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193
           +Y   DV VT+ +                         +         E    +L     
Sbjct: 169 DYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQE 228

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G+  D      L   +   R++L ++L              E         TG  L  
Sbjct: 229 RNGFPFDTKAIEELYVELASRRSELLRKLTETFGSWYQPKGGTEMF---CHPRTGKPLPK 285

Query: 254 ----LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T       ++  +  ++   +  +  + R   + +    +  +V   +S   ++ 
Sbjct: 286 YPRIKTPKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQK 344

Query: 307 TLQFLGA-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            LQ  G      +  G         + +       +    +I              +   
Sbjct: 345 KLQETGWIPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDK 404

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYA 414
             +R   +A +GK     +  G              ++    +                 
Sbjct: 405 AWLR--YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLD 462

Query: 415 RSFNVAPAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
                   Q   D       +EL  L +        + A           + +       
Sbjct: 463 GITGKPWVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTR 518

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
           +      +         +            + +KK + +    ++ L   + Q   ++ +
Sbjct: 519 DNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQ 578

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   K +               +    GR +  R                      
Sbjct: 579 WVAGEQQVKWKRR------------WIKGLDGRKVHVRSPHA------------------ 608

Query: 594 GGKLTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDE 641
                  ++Q+    I    ++       + G           +  VHDEI       + 
Sbjct: 609 ---ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEI 665

Query: 642 FNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
                +  +      W          L  EG     +
Sbjct: 666 AQV--VIEIAQEAMRWVGDHWNFRCLLDTEGKMGPNW 700


>gi|47934788|gb|AAT39832.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 202

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVXDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197


>gi|47934756|gb|AAT39816.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEETGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197


>gi|194100384|ref|YP_002003958.1| gp5 [Enterobacteria phage 13a]
 gi|193201431|gb|ACF15908.1| gp5 [Enterobacteria phage 13a]
          Length = 704

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 81/730 (11%), Positives = 165/730 (22%), Gaps = 146/730 (20%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENT---DVTIVAHNS-YFERTVLKACFN------L 86
           +D    E               +ALE        IV HN   ++   L            
Sbjct: 24  YDYSTAEYVSYRPGDF--GAYLDALEAEVARGGLIVFHNGHKYDVPALTKLAKLQLNREF 81

Query: 87  DIPIHRWICTLVLARSNGL---------------------PSALKAVGEALKLSSQKMEE 125
            +P    I TLVL+R                           AL+A G  L     + ++
Sbjct: 82  HLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGKRFGSHALEAWGYRLGEMKGEYKD 141

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-------------- 171
             + +      E  + +   N            +Y   DV VT+ +              
Sbjct: 142 DFKRMLEEQGEEYVDGMEWWNFN------EEMMDYNVQDVVVTKALLEKLLSDKHYFPPE 195

Query: 172 -----------FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
                      +         E    +L       G+  D      L   +   R++L +
Sbjct: 196 IDFTDVGYTTFWSESLEAVDVEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLR 255

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLED----LTETTC---QRVLSSNKKLTPQA 273
           +L              E         TG  L       T       ++  +  ++   + 
Sbjct: 256 KLTETFGSWYQPKGGTEMF---CHPRTGKPLPKYPRIKTPKVGGIFKKPKNKAQREGREP 312

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-----SRTGRWSGCVFPPQN 328
            +  + R   + +    +  +V   +S   ++  LQ  G      +  G         + 
Sbjct: 313 CE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEG 371

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +       +    +I              +     +R   +A +GK     +  G     
Sbjct: 372 VRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLR--YVAEDGKIHGSVNPNGAVTGR 429

Query: 389 LAWMAGEQWKLKAFETGEDLYV-------TTYARSFNVAPAQVTKDQRAIGKVMEL-ALG 440
                    ++    +                         Q   D       +EL  L 
Sbjct: 430 ATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGID----ASGLELRCLA 485

Query: 441 YQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           +        + A           + +       +      +         +         
Sbjct: 486 HFMARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGK 545

Query: 501 TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
              + +KK + +    ++ L   + Q   ++ +        K +               +
Sbjct: 546 ERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRR------------WI 593

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN---- 616
               GR +  R                             ++Q+    I    ++     
Sbjct: 594 KGLDGRKVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEM 632

Query: 617 ATKAGYDI--------VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPL 663
             + G           +  VHDEI       +      +         W          L
Sbjct: 633 LVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQV--VIETAQEAMRWVGDHWNFRCLL 690

Query: 664 KAEGYESKRY 673
             EG     +
Sbjct: 691 DTEGKMGPNW 700


>gi|47934748|gb|AAT39812.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934754|gb|AAT39815.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934758|gb|AAT39817.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934760|gb|AAT39818.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934800|gb|AAT39838.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197


>gi|47934688|gb|AAT39782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 43/225 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L+  +      ++ E++ +                        +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEIFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              ++   L  E G   +  TET   +V  +  +                +  V  +++ 
Sbjct: 61  SRLQIGDRL-QELGWKPKQFTETGKAKVDETILESIDLPEAQLIAEYLMIQKRVGLIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ ++              + TGR +        +P                        
Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
              +      RS     +G +L+  DL+GIE R LA    +    
Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQ 200


>gi|32141203|ref|NP_733604.1| DNA polymerase I [Streptomyces coelicolor A3(2)]
 gi|24413788|emb|CAD55317.1| putative DNA polymerase I [Streptomyces coelicolor A3(2)]
          Length = 563

 Score = 84.8 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 72/501 (14%), Positives = 127/501 (25%), Gaps = 152/501 (30%)

Query: 186 WYLDQTINDRGYC----VDVALAHTLNQI------VDVERTKLDQELESLTYGLVSSSRC 235
             +   +N  G      V   + H L               +L +E+ +     V     
Sbjct: 167 MLVAAEMNRAGLPWRADVHREVLHDLLGERYAGGGEPRRLAELAEEVSAAFGRRV-RPDL 225

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
              +    F + G+ +        + +        P    +     +  R  V    + +
Sbjct: 226 PADVVK-AFGQAGVKVGSTRRWELESL------DHPAVKPLIEY-KKLYRIWVAHGWSWL 277

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           +    DGR R      G + TGRW         +P+                        
Sbjct: 278 QDWVRDGRFRPEF-LAGGTVTGRWVTNGGGGLQIPK------------------------ 312

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R  V+A  G +LVVAD   +E RVLA ++ +   ++      DLY +   R
Sbjct: 313 -------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDR 365

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           +F+              K+  L   Y            T+G  L   A L          
Sbjct: 366 AFSGDRD--------QAKLAVLGAVY----------GQTSGDGLKNLAAL---------- 397

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                                              R++  R     ++      +  E G
Sbjct: 398 -----------------------------------RRRFPRAVAYVDD----AARAGEEG 418

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
           + +     R  P      D          G          +R+         T     G 
Sbjct: 419 RLVRTWLGRTCPPAAGAADGTEEA-----GLPQDEPAGAGDRAQEWVPGYASTNARARGR 473

Query: 596 KLTENIVQA---------------VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                +VQ                   D+             ++V   HDE++   P+ +
Sbjct: 474 FARNFVVQGSAADWALLLLAALRQTCADMA-----------AELVFFQHDEVIVHCPEEE 522

Query: 641 EFNASMLYHLMTSNPSWAKGL 661
              A+ +   +      A  L
Sbjct: 523 ---AATVVAAIRDAAELAGRL 540


>gi|47934786|gb|AAT39831.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197


>gi|47934722|gb|AAT39799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 73/223 (32%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+                      V +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V     +   +       R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P                        
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP------------------------ 154

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 155 AVPAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197


>gi|47934716|gb|AAT39796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+                      V +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V     +   +       R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197


>gi|291438121|ref|ZP_06577511.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
 gi|291341016|gb|EFE67972.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 563

 Score = 84.4 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/423 (13%), Positives = 104/423 (24%), Gaps = 126/423 (29%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F + G+ +        + V        P    +     +  R  V    + ++    DGR
Sbjct: 219 FAQAGVKVSSTRRWEIESV------DHPAVKPLLEY-KKLYRIWVAHGWSWLQDWVRDGR 271

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G + +GRW         +P+                                
Sbjct: 272 FRPEFH-AGGTVSGRWVSHGGGALQIPK-------------------------------V 299

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G +LVVAD   +E RVLA ++ +   ++      DLY +   R F+     
Sbjct: 300 IRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRVFSGDRD- 358

Query: 424 VTKDQRAIGKVMELALGYQGGAK-AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                    K+  L   Y   +    + +A+                     +  A  + 
Sbjct: 359 -------RAKLAVLGAVYGQTSGDGLKNLAAL-----------------RRRFPRAVAYV 394

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                   E  +   ++G  C    +                  A E+    G  +    
Sbjct: 395 DEAARAGEEGRLVRTWLGRTCPPAART--------------TDDAVEEA---GIPVAGGS 437

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                        +    R ++        R    G      +V
Sbjct: 438 GTSGGSGASGDSGE---------------EAEGGRPWVPGHASADARAR--GRFARNFVV 480

Query: 603 QAV---------------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE-FNASM 646
           Q                   D              ++V   HDE++   P+ +     + 
Sbjct: 481 QGSAADWALLLLAALRRALSD-----------RAAELVFFQHDEVIVHCPEEEARDVVAA 529

Query: 647 LYH 649
           +  
Sbjct: 530 IRE 532


>gi|239929792|ref|ZP_04686745.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672]
          Length = 577

 Score = 84.4 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/423 (13%), Positives = 104/423 (24%), Gaps = 126/423 (29%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F + G+ +        + V        P    +     +  R  V    + ++    DGR
Sbjct: 233 FAQAGVKVSSTRRWEIESV------DHPAVKPLLEY-KKLYRIWVAHGWSWLQDWVRDGR 285

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G + +GRW         +P+                                
Sbjct: 286 FRPEFH-AGGTVSGRWVSHGGGALQIPK-------------------------------V 313

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G +LVVAD   +E RVLA ++ +   ++      DLY +   R F+     
Sbjct: 314 IRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRVFSGDRD- 372

Query: 424 VTKDQRAIGKVMELALGYQGGAK-AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                    K+  L   Y   +    + +A+                     +  A  + 
Sbjct: 373 -------RAKLAVLGAVYGQTSGDGLKNLAAL-----------------RRRFPRAVAYV 408

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                   E  +   ++G  C    +                  A E+    G  +    
Sbjct: 409 DEAARAGEEGRLVRTWLGRTCPPAART--------------TDDAVEEA---GIPVAGGS 451

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                        +    R ++        R    G      +V
Sbjct: 452 GTSGGSGASGDSGE---------------EAEGGRPWVPGHASADARAR--GRFARNFVV 494

Query: 603 QAV---------------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE-FNASM 646
           Q                   D              ++V   HDE++   P+ +     + 
Sbjct: 495 QGSAADWALLLLAALRRALSD-----------RAAELVFFQHDEVIVHCPEEEARDVVAA 543

Query: 647 LYH 649
           +  
Sbjct: 544 IRE 546


>gi|312436366|gb|ADQ83175.1| DNA polymerase [Yersinia phage Yep-phi]
          Length = 704

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/475 (11%), Positives = 103/475 (21%), Gaps = 132/475 (27%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             +V +    + +   L     +               VL   K   P A +        
Sbjct: 330 EHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEY 389

Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSH 336
                         N  +  +  DGR+ G++   GA  TGR +        +P   +   
Sbjct: 390 LMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVPSIRAAYG 448

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           E                PDP                    V  D +G+E R L       
Sbjct: 449 EPCRAAFGAEHNLKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRY 491

Query: 397 WKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
            + +  ET     + T  +    +             K       Y  GA          
Sbjct: 492 DEGEYVETILTGDIHTKNQMAAGLPTRDN-------AKTFIYGFLYGAGAAKI------- 537

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                                           +R+ K + ++  
Sbjct: 538 -------------------------------------GQIVGGTAEDGKRLIKNFLEQTP 560

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            +         A  + I       ++       V  K+      +    GR +  R    
Sbjct: 561 AI--------AALREAITGTLVKDSKWVGGEQKVTWKRR----WVRGLDGRKVHVRSPHA 608

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYD-------- 623
                                    ++Q+    I    ++       + GY         
Sbjct: 609 ---------------------ALNTLLQSAGALICKLWIVKTEEMLLEMGYKHGWDGDFC 647

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
           ++  +HDE        +   A ++  +      W          L  EG     +
Sbjct: 648 LMGWIHDEQQLACRTEEI--AKVVIEVSQQAMHWVGDHFNFRCQLDTEGKMGPNW 700


>gi|47934718|gb|AAT39797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G  +DV  A  L   +  E   ++ EL+S+                      V +  
Sbjct: 1   ERNGSKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V     +   +       R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197


>gi|291335495|gb|ADD95107.1| 5B protein [uncultured phage MedDCM-OCT-S04-C348]
          Length = 429

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 71/281 (25%), Gaps = 39/281 (13%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETT----CQRVLSSNKKLTPQAIQVFNNRMRAS 284
            V +    +++   L  + G   E  T+         VL       P+A  +    +   
Sbjct: 49  EVFNPGSRQQIVDRLKKKYGWVPESKTDKGNPVLNDDVLEKLP--YPEAKPLAEYMLLKK 106

Query: 285 RS--AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
           R        N  ++ ++ DG + G +   G   TGR S        +P            
Sbjct: 107 RLGQIKDGNNAWIKLVSPDGYIHGDMVTNGC-ITGRCSHRNPNTAQIPAGYSP------- 158

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                                 RS   A +   L+ +D   +E R LA            
Sbjct: 159 -----------------YGKECRSLFHAPDDWILIGSDAKALELRCLAGYLAFWD----G 197

Query: 403 ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
                +              +   + R I K +  A+ Y  G      +      + +  
Sbjct: 198 GEYGQMVTDDSVDIHTYNQEKFGVETRDISKRLLYAVLYGAGFYKAGTIVDPDEKDPDIL 257

Query: 463 AHLVK--TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             L K   NS        +     + EN             
Sbjct: 258 KQLGKTAINSFMTGVPALQELKNKLAENLVARGYLLGLDRR 298


>gi|47934762|gb|AAT39819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 84.4 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 70/221 (31%), Gaps = 44/221 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                     RSC    EG  LV  D +G+E R+LA    +
Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDD 195


>gi|47934684|gb|AAT39780.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 43/225 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L+  +      ++ E++ +                        +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              ++   L  E G   +  TET   +V  +  +                +  V  +++ 
Sbjct: 61  SRLQIGDRL-QELGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKRVGLIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ ++              + TGR +        +P                        
Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
              +      RS     +G +L+  DL+GIE R LA    +    
Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHHMQDPEWQ 200


>gi|229073437|ref|ZP_04206573.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           cereus F65185]
 gi|228709744|gb|EEL61782.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           cereus F65185]
          Length = 464

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/380 (13%), Positives = 103/380 (27%), Gaps = 70/380 (18%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------------PVMPQVL 57
            + ID    G   + +   +I    GF D+                           + L
Sbjct: 86  YTFIDTKSTGSNPFKDS--IISITIGFMDNSFFYIPIKPFKHRLSQNTSTLSLEYTMKKL 143

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              LE  D  ++  NS      L    N DI  + +  T + A         K V E  K
Sbjct: 144 SPLLE-KDTLLILSNSKQHIHALYNWCNFDITYNIFWDTEIAANLLNENHP-KGVKEWYK 201

Query: 118 --LSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE---------AWRLFGEYCKGDVT 166
             +  + + +G  L     K    E        +H             +   EY K    
Sbjct: 202 EYVLPRLISKGTILNTMDSKKYMFEKTLYDQLQHHVATYFACYDIFMLKSVFEYQKRIFE 261

Query: 167 VT-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT-LNQIVDVERTKLDQELES 224
                +    +     E  L  +  T   +G  +        + QI+  +   + +E+ +
Sbjct: 262 NPKFNLVHIYKLFREIEMPLIAVLTTAERKGIKISEEFLSNDVKQILQAKLQSVKKEILN 321

Query: 225 LTYGLV-------------------------SSSRCLEKLKTWLFLETGL-----HLEDL 254
                +                          +      L   L+++  +       +  
Sbjct: 322 HLGSTITLNNCMHPPKQQNKYNSVNKLTSTLFNINSPAHLAQKLYIDNAILKPIMEYDKG 381

Query: 255 TET------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM--NSDGRLRG 306
            ++      T ++ L  N  + P    +   R    +      N+L +      D ++  
Sbjct: 382 CKSLISKLKTDRKTLIRNLSMHPVIPLILEYRR-LVKLISSFCNSLPKEQQGTIDNKIHP 440

Query: 307 TLQFLGASRTGRWSGCVFPP 326
               +G ++TGR S      
Sbjct: 441 IYNSVG-TKTGRMSCSSPNL 459


>gi|47934690|gb|AAT39783.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934692|gb|AAT39784.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934700|gb|AAT39788.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934702|gb|AAT39789.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 43/225 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L+  +      ++ E++ +                        +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              ++   L  E G   +  TET   +V  +  +                +  V  +++ 
Sbjct: 61  SRLQIGDRL-QELGWKPKQFTETGKAKVDETILESIDLPEAQLIAEYLMIQKRVGLIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ ++              + TGR +        +P                        
Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
              +      RS     +G +L+  DL+GIE R LA    +    
Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQ 200


>gi|47934660|gb|AAT39768.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 64/228 (28%), Gaps = 49/228 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D+     L   +      ++ E++++                      V +  
Sbjct: 1   ERNGFKLDIDACELLRAKLSDRMGIIEDEVQAVFPPIVEERWSEKTGKRLKDKITVFNLA 60

Query: 235 CLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +          +  L           ++    +   +  V  +
Sbjct: 61  SRKQIAERLMGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ---AKLIAEYLMLQK-RVGMI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ ++ ++              + TGR +        +P  ++                 
Sbjct: 117 DSWLKHVDKTTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKP---------------- 160

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                     + +RS     EG  LV +DL+G+E R L+    ++   
Sbjct: 161 --------YGEEIRSLWTVDEGNVLVGSDLSGVELRCLSHYMQDEEWQ 200


>gi|154334068|ref|XP_001563289.1| mitochondrial DNA polymerase I protein D [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060301|emb|CAM45712.1| putative mitochondrial DNA polymerase I protein D [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1578

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/412 (11%), Positives = 97/412 (23%), Gaps = 88/412 (21%)

Query: 260  QRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNT------LVEAMNSDGRLRGTLQFLG 312
            +  LS  K         +        +       +      +V  ++S            
Sbjct: 1193 EDSLSYFKSNHDDKTASIILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHN 1252

Query: 313  ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
             + TGR +      QN+P+  +S                            +R   I+  
Sbjct: 1253 KTNTGRLASANPNCQNIPKEDKS---------------------------SLRDMFISRF 1285

Query: 373  GKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            G K   + AD + +E   LA +A ++  L+      D +           P     D   
Sbjct: 1286 GDKGMCIEADYSQLEVVALAVLASDEQMLEDLRQNVDFHCKRVTMMR---PDLKYTDVLQ 1342

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              K                                        +     +F R       
Sbjct: 1343 RAKKN-----------------------------KELEFVKLRQQAKIFSFQRQYGAGVR 1373

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
              +            + +   + +  V       ++    +  +  A +    R+V    
Sbjct: 1374 MLSQSTGLTQDQVRMLIEKENETYRGVEVF----NKMVALSANSYDASLQNGVRNVRGHQ 1429

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
              K    +     +G   V+ +       L                L    VQ  + +I+
Sbjct: 1430 FFKGMFPV----LTGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIV 1485

Query: 611  AEGMMNA----------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651
             + M+                  +  TVHD +  +   +     +     +M
Sbjct: 1486 -QVMLGVLWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1536



 Score = 77.1 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 56/417 (13%), Positives = 112/417 (26%), Gaps = 95/417 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----LWD----------- 46
             L +D ET + I   K     + ++  V+L         V      +D           
Sbjct: 466 RYLILDLETTT-IRRYKRVANPFTKENYVVLSGARDYKGNVFLPRRYFDRSVALRYDDPS 524

Query: 47  CVHDPVMPQV------LKEALENTDVTIVAHNSYFER-TVL-----KACFNLDIPIHRWI 94
                 + +           L+  DV  V HN  F+   +      +          +  
Sbjct: 525 VTSQNHLVEKSSKDSLFLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRRFLR---RGGKIW 580

Query: 95  CTLVLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
            T+             G  + L+ V ++    + K++  K               +   K
Sbjct: 581 DTMYAEYLLTGHEVKLGHGAGLEDVAKSYGGQTMKLDAVK-------------QAWSEGK 627

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------TINDRGYC 198
             +   +    EY  GD+  T  IF +    + +++++               +   G  
Sbjct: 628 ETYEIPYSTLTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGLK 687

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLV-------SSSRCLEKLKTWLFLETGLHL 251
            ++ LA   +  +  + ++L ++LE      +        +    + L T+ F       
Sbjct: 688 TNLDLAQRQSNELTTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFF------G 741

Query: 252 EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQF 310
            +LT +T  R                  R                +   +G  LR  +  
Sbjct: 742 GNLTLSTNARESKPLTGE-------LFARHTLF-LRSEY---FPRSAYPNGVFLRPPVHV 790

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
           LG       +G          PS     L +          +      I+    R  
Sbjct: 791 LGIGDCVVMAG---------LPSEKGTRLFRGYLEAYMRQANFRKSSSILESLRREA 838


>gi|47934668|gb|AAT39772.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 43/225 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L+  +      ++ E++ +                        +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKITEFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              ++   L  E G   +  TET   +V  +  +                +  V  +++ 
Sbjct: 61  SRLQIGDRL-QELGWKPKQFTETGKAKVDETILESIDLPEAQLIAEYLMIQKRVGLIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ ++              + TGR +        +P                        
Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
              +      RS     +G +L+  DL+GIE R LA    +    
Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQ 200


>gi|47934752|gb|AAT39814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 84.0 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+ +D   A  L   +  E   ++ EL+S+   +V                   +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTFRRLKDKVTTFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+   + TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVKFTNKTEKGNIIVDEKALNSIDLPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG KLV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNKLVGIDASGLELRMLAHYMDDED 197


>gi|116666722|pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts
           Into The Mechanisms For Processivity, Frameshifting And
           Editing
 gi|116666726|pdb|2AJQ|F Chain F, Structure Of Replicative Dna Polymerase Provides Insigts
           Into The Mechanisms For Processivity, Frameshifting And
           Editing
          Length = 704

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 76/697 (10%), Positives = 158/697 (22%), Gaps = 141/697 (20%)

Query: 67  TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNGL-------------- 105
            IV HN   ++   L             +P    I TLVL+R                  
Sbjct: 55  LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGK 114

Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                    AL+A G  L     + ++  + +      E  + +   N            
Sbjct: 115 LPGKRFGSHALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMM 168

Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193
           +Y   DV VT+ +                         +         E    +L     
Sbjct: 169 DYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQE 228

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G+  D      L   +   R++L ++L              E         TG  L  
Sbjct: 229 RNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMF---CHPRTGKPLPK 285

Query: 254 ----LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T       ++  +  ++   +  +  + R   + +    +  +V   +S   ++ 
Sbjct: 286 YPRIKTPKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQK 344

Query: 307 TLQFLGA-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            LQ  G      +  G         + +       +    +I              +   
Sbjct: 345 KLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDK 404

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYA 414
             +R   +A +GK     +  G              ++    +                 
Sbjct: 405 AWLR--YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLD 462

Query: 415 RSFNVAPAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
                   Q   D       +EL  L +        + A           + +       
Sbjct: 463 GITGKPWVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTR 518

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
           +      +         +            + +KK + +    ++ L   + Q   ++ +
Sbjct: 519 DNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQ 578

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   K +               +    GR +  R                      
Sbjct: 579 WVAGEQQVKWKRR------------WIKGLDGRKVHVRSPHA------------------ 608

Query: 594 GGKLTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDE 641
                  ++Q+    I    ++       + G           +  VHDEI       + 
Sbjct: 609 ---ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEI 665

Query: 642 FNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
                +         W          L  EG     +
Sbjct: 666 AQV--VIETAQEAMRWVGDHWNFRCLLDTEGKMGPNW 700


>gi|47934736|gb|AAT39806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGSSLVGIDASGLELRMLAHYMDDED 197


>gi|47934742|gb|AAT39809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 71/223 (31%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVRDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC     G +LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDGGNRLVGIDASGLELRMLAHYMDDED 197


>gi|47934710|gb|AAT39793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 72/222 (32%), Gaps = 44/222 (19%)

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSRC 235
             G+ +D   A  L   +  E   ++ EL+S+                      + +   
Sbjct: 2   RNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPGS 61

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
            +++   L    G+  +  TE     V                 R    +  V ++++ +
Sbjct: 62  RKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKRVAQIDSWL 120

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           +A+  DGR+ G +   GA  TGR +        +P  S                      
Sbjct: 121 KAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP-------------------- 159

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                    RSC    EG +LV  D +G+E R+LA    ++ 
Sbjct: 160 ----FGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDED 197


>gi|47934672|gb|AAT39774.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934674|gb|AAT39775.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934676|gb|AAT39776.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934678|gb|AAT39777.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934680|gb|AAT39778.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934686|gb|AAT39781.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934694|gb|AAT39785.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 43/225 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L+  +      ++ E++ +                        +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              ++   L  E G   +  TET   +V  +  +                +  V  +++ 
Sbjct: 61  SRLQIGDRL-QELGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKRVGLIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ ++              + TGR +        +P                        
Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
              +      RS     +G +L+  DL+GIE R LA    +    
Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQ 200


>gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
 gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
          Length = 374

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 29/194 (14%)

Query: 4   LFIDFETRS--PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
           L  D ET +   +DL    +  Y E   V L  F + D  V L       + P  LK  L
Sbjct: 16  LAKDLETCAVFAVDLEADSMHSYQE--KVCLLQFTYHDTTVLLDPLAAGDLAP--LKPVL 71

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-AL-KAVGEALKLS 119
            ++ +  + H + ++   L   F+++I       T++ ++  G     L   +G+   ++
Sbjct: 72  ADSSIRKIFHAADYDIRCLARDFDIEIR--GLFDTMIASQFLGEEKVGLADVLGKYFDVT 129

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +   R    E                      Y   D     ++   LEP  
Sbjct: 130 LDKRFQRADWSKRPLSPE-------------------MCHYAAEDTRHLEKLVAILEPAL 170

Query: 180 SKEQELWYLDQTIN 193
            ++  LW++++   
Sbjct: 171 KEKDRLWWVEEEFR 184


>gi|47934750|gb|AAT39813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 72/223 (32%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDSIDLPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +    ++ TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRV-ITNSAVTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG +LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDED 197


>gi|9627454|ref|NP_041982.1| DNA polymerase [Enterobacteria phage T7]
 gi|118856|sp|P00581|DPOL_BPT7 RecName: Full=DNA polymerase; AltName: Full=T7 DNA polymerase
 gi|15591|emb|CAA24412.1| unnamed protein product [Enterobacteria phage T7]
 gi|37956666|gb|AAP33936.1| gene 5 [Enterobacteria phage T7]
 gi|265524990|gb|ACY75853.1| DNA polymerase [Enterobacteria phage T7]
          Length = 704

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 76/697 (10%), Positives = 158/697 (22%), Gaps = 141/697 (20%)

Query: 67  TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNGL-------------- 105
            IV HN   ++   L             +P    I TLVL+R                  
Sbjct: 55  LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGK 114

Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                    AL+A G  L     + ++  + +      E  + +   N            
Sbjct: 115 LPGKRFGSHALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMM 168

Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193
           +Y   DV VT+ +                         +         E    +L     
Sbjct: 169 DYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQE 228

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G+  D      L   +   R++L ++L              E         TG  L  
Sbjct: 229 RNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMF---CHPRTGKPLPK 285

Query: 254 ----LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                T       ++  +  ++   +  +  + R   + +    +  +V   +S   ++ 
Sbjct: 286 YPRIKTPKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQK 344

Query: 307 TLQFLGA-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            LQ  G      +  G         + +       +    +I              +   
Sbjct: 345 KLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDK 404

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYA 414
             +R   +A +GK     +  G              ++    +                 
Sbjct: 405 AWLR--YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLD 462

Query: 415 RSFNVAPAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
                   Q   D       +EL  L +        + A           + +       
Sbjct: 463 GITGKPWVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTR 518

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
           +      +         +            + +KK + +    ++ L   + Q   ++ +
Sbjct: 519 DNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQ 578

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                   K +               +    GR +  R                      
Sbjct: 579 WVAGEQQVKWKRR------------WIKGLDGRKVHVRSPHA------------------ 608

Query: 594 GGKLTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDE 641
                  ++Q+    I    ++       + G           +  VHDEI       + 
Sbjct: 609 ---ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEI 665

Query: 642 FNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
                +         W          L  EG     +
Sbjct: 666 AQV--VIETAQEAMRWVGDHWNFRCLLDTEGKMGPNW 700


>gi|47934662|gb|AAT39769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 77/227 (33%), Gaps = 52/227 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+                      V +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+  +  TE       ++VL    +      +   + M   +  V +
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPE---AKAVAHYMMLQK-RVAQ 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ ++A+  DGR+ G +   GA  TGR +        +P  S                 
Sbjct: 116 IDSWLKAVKDDGRVHGRVVTNGA-VTGRMTHQSPNMAQVPAVSAP--------------- 159

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                         RSC    EG  LV  D +G+E R+LA    +  
Sbjct: 160 ---------FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDD 197


>gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
 gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
          Length = 409

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 23/188 (12%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           ++ ET    DL    +  Y E   V L     +     +            L   L N  
Sbjct: 52  LNTETTLAFDLEADSLHHYTE--KVCLIQVSTNSETALIDPLAPLD--LSPLAPILANPA 107

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
           V  V H + ++   L   F  ++       T++ ++  G       +  AL     K   
Sbjct: 108 VRKVFHGADYDMRSLYRDFGFEVR--NLFDTMIASQFLGEKEV--GLAAAL-----KKRF 158

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
           G EL  ++ K +  +      +P          EY   D ++  +++ +LE     +  L
Sbjct: 159 GVELDKKYQKADWSK------RPFSP----QMIEYAMKDTSLLIKLYLQLEDELRAKGRL 208

Query: 186 WYLDQTIN 193
            ++++   
Sbjct: 209 AWVEEESE 216


>gi|47934606|gb|AAT39741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 77/228 (33%), Gaps = 52/228 (22%)

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSS 233
               G+ +DV  A  L   +  E   ++ EL+S+                      V + 
Sbjct: 1   KERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNP 60

Query: 234 RCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
              +++   L    G+  +  TE       ++VL    +      +   + M   +  V 
Sbjct: 61  GSRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPE---AKAVAHYMMLQK-RVA 115

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           ++++ ++A+  DGR+ G +   GA  TGR +        +P  S                
Sbjct: 116 QIDSWLKAVKDDGRVHGRVVTNGA-VTGRMTHQSPNMAQVPAVSAP-------------- 160

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                          RSC    EG  LV  D +G+E R+LA    +  
Sbjct: 161 ----------FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDD 198


>gi|47934682|gb|AAT39779.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 62/225 (27%), Gaps = 43/225 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L+  +      ++ E++                          +  
Sbjct: 1   ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEAFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              ++   L  E G   +  TET   +V  +  +                +  V  +++ 
Sbjct: 61  SRLQIGDRL-QELGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKRVGLIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ ++              + TGR +        +P                        
Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
              +      RS     +G +L+  DL+GIE R LA    +    
Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQ 200


>gi|255070583|ref|XP_002507373.1| predicted protein [Micromonas sp. RCC299]
 gi|226522648|gb|ACO68631.1| predicted protein [Micromonas sp. RCC299]
          Length = 1659

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 595  GKLTENIVQAVSRDILAEGMMNA----TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH- 649
             +      Q  + D++   M+        +    VL +HDE++ E   +    A+     
Sbjct: 1562 RRAVNTACQGSAADVVKRAMIAVFDELDPSLATPVLQIHDELLFEVDASRVVEAARAVRA 1621

Query: 650  LMTSNP-SWAKGLPLKAEGYESKRYR 674
            +M      +   +PL  +      + 
Sbjct: 1622 IMERAGDEFGLTVPLPVKVSAGANWG 1647


>gi|229604938|ref|YP_002875638.1| putative DNA polymerase [Vibrio phage VP93]
 gi|227976983|gb|ACP44085.1| putative DNA polymerase [Vibrio phage VP93]
          Length = 811

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 101/385 (26%), Gaps = 74/385 (19%)

Query: 288 VLKLNTLVEAMNSD----GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           + K + +++ +  +      +        A+ TGR S      QNLPR            
Sbjct: 447 ITKSSGMLQYVIPEKPDGSGIIHHRLNTCATVTGRLSASNPNLQNLPR------------ 494

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                   ++ D        V+    +   E  +++  D + +E  +     G+   L+ 
Sbjct: 495 --------AEEDKDGNAKSRVKEMFTSRFGEDGRIIEVDYSALEVVMGVVHTGDMKLLEL 546

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
            + G D++    A   N+   +V                                   + 
Sbjct: 547 LKAGTDMHCYRLAFQENLDYEEV------------------------------YRRCHDE 576

Query: 462 FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                    +      A +F      +    A          +             ++  
Sbjct: 577 GFEFHALWKSMRTAIKAPSFAAQYGASAAGIAFATGCTVEFAQAFLDNEAALFPDTAKFR 636

Query: 522 NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
             +    E+T           +R++      +         P+G    +R V   R    
Sbjct: 637 QVIRDEVERTGNLPG----NLKREMTDDGSVRLYRRGYWTSPAGMRYSFRQV--ERWVKR 690

Query: 582 TTTRQLTREYTY-GGKLTENIVQAVSRDILAEG--MM-------NATKAGYDIVLTVHDE 631
              R + +   Y   +L     Q  +  ++A    M+       N       ++  VHD 
Sbjct: 691 ADGRGMEKVMDYKDTQLANYWCQGEAFFLMAVAFGMILRHMIAKNWYDNQVCLITNVHDA 750

Query: 632 IVCETPDTDE--FNASMLYHLMTSN 654
              +  + +     A  +  +M   
Sbjct: 751 AYLDAANEEVGREAALAVKDIMERA 775



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 81/314 (25%), Gaps = 67/314 (21%)

Query: 3   TLFIDFETRSPIDLTKCGI--CKYAEDVCVILFAFGFD----DHPVEL-----WDCVHDP 51
            LF+D ET    +    G     Y  D  ++   F  D    D   E+            
Sbjct: 4   VLFLDLET---QNYEYHGSKASPYCPDNYIVESGFRVDRKKPDGTTEVGGIESVRYDSRE 60

Query: 52  VMPQ----VLKEALENTDVTIVAHNSYFERTVLKACFNLDI-----PIHRWICTLVLARS 102
                         E+    IVAHN+ +E +                  R  CT+     
Sbjct: 61  AFVNAPTTEWLPIPED-CWLIVAHNAAYEVSWFLQFARESFESFLRRGGRVFCTMHGEYL 119

Query: 103 ------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                      +L          + K++  K L             +++          L
Sbjct: 120 ATDQTSLYP--SLDETAPKYG-GTHKVDGIKLL-------------WEQGVLTSEIDPIL 163

Query: 157 FGEYCK---GDVTVTREIFKRLEPLSSKE------QELWYLD---QTINDRGYCVDVALA 204
             EY     GDV  T   F     + +++       E              G  V++ +A
Sbjct: 164 LHEYLAGPNGDVANTALCFYGQCAVLAEQGKFPLVWERMDALLSFAFCEWFGLYVNMPVA 223

Query: 205 HTLNQIVDVERTKLDQELE-----SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL---TE 256
                + + E  +L   L       L   +  +      +   L+    +  +      +
Sbjct: 224 QKNQAVQEAEIAELTTRLRTYLPDDLPEEIDFNWGSDFHMSALLYG-GPIKYKKKVHYDK 282

Query: 257 TTCQRVLSSNKKLT 270
            T  +V +      
Sbjct: 283 PTYVKVDAYQLHEH 296


>gi|256786957|ref|ZP_05525388.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289770851|ref|ZP_06530229.1| DNA polymerase I [Streptomyces lividans TK24]
 gi|289701050|gb|EFD68479.1| DNA polymerase I [Streptomyces lividans TK24]
          Length = 493

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 72/501 (14%), Positives = 127/501 (25%), Gaps = 152/501 (30%)

Query: 186 WYLDQTINDRGYC----VDVALAHTLNQI------VDVERTKLDQELESLTYGLVSSSRC 235
             +   +N  G      V   + H L               +L +E+ +     V     
Sbjct: 97  MLVAAEMNRAGLPWRADVHREVLHDLLGERYAGGGEPRRLAELAEEVSAAFGRRV-RPDL 155

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV 295
              +    F + G+ +        + +        P    +     +  R  V    + +
Sbjct: 156 PADVVK-AFGQAGVKVGSTRRWELESL------DHPAVKPLIEY-KKLYRIWVAHGWSWL 207

Query: 296 EAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPD 355
           +    DGR R      G + TGRW         +P+                        
Sbjct: 208 QDWVRDGRFRPEF-LAGGTVTGRWVTNGGGGLQIPK------------------------ 242

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                   +R  V+A  G +LVVAD   +E RVLA ++ +   ++      DLY +   R
Sbjct: 243 -------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDR 295

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
           +F+              K+  L   Y            T+G  L   A L          
Sbjct: 296 AFSGDRD--------QAKLAVLGAVY----------GQTSGDGLKNLAAL---------- 327

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                                              R++  R     ++      +  E G
Sbjct: 328 -----------------------------------RRRFPRAVAYVDD----AARAGEEG 348

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
           + +     R  P      D          G          +R+         T     G 
Sbjct: 349 RLVRTWLGRTCPPAAGAADGTEEA-----GLPQDEAADAGDRAQEWVPGYASTNARARGR 403

Query: 596 KLTENIVQA---------------VSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
                +VQ                   D+             ++V   HDE++   P+ +
Sbjct: 404 FARNFVVQGSAADWALLLLAALRQTCADMA-----------AELVFFQHDEVIVHCPEEE 452

Query: 641 EFNASMLYHLMTSNPSWAKGL 661
              A+ +   +      A  L
Sbjct: 453 ---AATVVAAIRDAAELAGRL 470


>gi|170743378|ref|YP_001772033.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
 gi|168197652|gb|ACA19599.1| 3'-5' exonuclease [Methylobacterium sp. 4-46]
          Length = 204

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 33/204 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+  + +   + +      D   +L         P VLK  L +
Sbjct: 20  IAVDTET--------LGLEPHRD--RLCVVQISRGDGEADLVQIAKGGPEPVVLKRVLTD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             VT + H + F+  VL       +      CT V +R +        LK +   L    
Sbjct: 70  PAVTKIFHFARFDLAVLFHRLG--VMPGPIYCTKVASRLSRTYTDRHGLKDLVREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +             +       EY   DV     +  +L+ + +
Sbjct: 124 --------LGIEISKQQQSSDWGAETLSPAQI------EYAASDVLHLHALRAKLDAMLA 169

Query: 181 KEQELWYLDQTINDRGYCVDVALA 204
           +E+     +           + L 
Sbjct: 170 REERTALAEACFAFLPTRARLDLL 193


>gi|239947292|ref|ZP_04699045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921568|gb|EER21592.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 203

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 56/204 (27%), Gaps = 33/204 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET         G+  + +   + L  F   +         +   +   LK  L +
Sbjct: 20  LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHFVHFTNQDYIAPNLKALLLD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H + F+   +K   ++D+      CT + ++          L  +   L    
Sbjct: 70  KTRCKIFHFARFDLAFIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLNDLCREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +        N            EY   DV    ++   L+ +  
Sbjct: 124 --------LNINISKQQQSSYWGADNLS------SEQKEYAAKDVLYLHQLKDILQKMLL 169

Query: 181 KEQELWYLDQTINDRGYCVDVALA 204
           KE                 ++ L 
Sbjct: 170 KENRYELAQDIFRFLPTRANLDLL 193


>gi|167393523|ref|XP_001740613.1| DNA polymerase I [Entamoeba dispar SAW760]
 gi|165895221|gb|EDR22960.1| DNA polymerase I, putative [Entamoeba dispar SAW760]
          Length = 226

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 56/215 (26%), Gaps = 43/215 (20%)

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                         +           A +        +   +++  +     +   E+  
Sbjct: 40  DITDGERRKAKTIVYGCIYGIGPFSLADQLHISLDESKTFLESFLDQFPSFKKWKEEIIT 99

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
               T       I  +RR +  +    DK  L                           +
Sbjct: 100 NASTT--GFVHTINNRRRRINNLTDSSDKKTL--------------------------AE 131

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTD 640
             R          + +Q  + DI+   M+   K       G  ++L +HDEIV E PD  
Sbjct: 132 SKRIA------VNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEVPDHL 185

Query: 641 EFNA-SMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
                  L +LM         +PL       K++ 
Sbjct: 186 LDEVCVTLKYLMEHIVQ--LEVPLVVTVETGKKWG 218



 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 37/114 (32%), Gaps = 5/114 (4%)

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           ++ R+LA    +   ++ F++  D++    A         +T  +R   K +     Y  
Sbjct: 1   MKLRILANFTKDHHLIEFFKSNIDIHKLIAAHWLKKNVNDITDGERRKAKTIVYGCIYGI 60

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
           G  +         L+++         S  +++   + +   +  N         
Sbjct: 61  GPFSLAD-----QLHISLDESKTFLESFLDQFPSFKKWKEEIITNASTTGFVHT 109


>gi|315518941|dbj|BAJ51818.1| DNA polymerase-like protein [Ralstonia phage RSB2]
          Length = 701

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 84/741 (11%), Positives = 184/741 (24%), Gaps = 126/741 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA----FGFDDHPVELW--DCVHDPVMPQVLKE 59
            D ET   ++                + +        D+    +       P   +   +
Sbjct: 12  FDIETDGLME------YSVIPGAETTVVSKVHCIVIHDYHANWYRRYRSDQPGAIEEALK 65

Query: 60  ALENTDVTIVAHN-SYFERTVLKA-CFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL 116
            L ++D+  VAHN   ++  VL+       +   R + TLVL+R           V    
Sbjct: 66  VLMDSDLL-VAHNGIKYDIPVLELLYPWFKLDKRRVLDTLVLSRLLFADIKDRDNVLLRK 124

Query: 117 KLSSQKMEEGKELIARFCKGETHECL-YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                K+     L A   +    +    +       E      EYC+ DV VTR++F  +
Sbjct: 125 GQLPGKLYGSHSLKAWGYRVGEAKGEYGEGEGNVWAELNDDMVEYCEQDVRVTRKVFDLM 184

Query: 176 EPLSSKE--------------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              +                  +  ++       G+  D   A  L   +  +R  +  +
Sbjct: 185 VQNTYYFSDDMTQLQYAVRLEHDAAWVLAQQERNGFPFDERGAAALYAELAGKRQTILDK 244

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           + +       +   +     +    TG  L        +          P+   ++    
Sbjct: 245 VMATFGSWYVAKGGV---TAFRHPRTGAPLTK--YPNVK---------YPKTGDIYTKAG 290

Query: 282 RASRSAVLK---LNTLVEAM-NSDGRLRGT--LQFLGASRTGRWSGCVF---------PP 326
           + ++   +K      +   + N   R      LQ  G   T      +            
Sbjct: 291 KLAKIEYVKDRPYTPIEHVVFNPGSRQHIAKVLQERGWVPTEFTETGLPKVDEETLAEAA 350

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA----SEGKKLVVA--- 379
           +NLP   R   +L      L   +    +             I       G     A   
Sbjct: 351 ENLPEQYRDDVKLIAEYLLLVKRLGQIAEGDNAWLKLCNKGFIHGSVNPNGAVTGRATHA 410

Query: 380 --DLAGIEARVLAWMAGEQWKLKAFETG-----EDLYVTTYARSFNVAPAQVTKDQ--RA 430
             +LA + +    +    +                  V     +  +    +        
Sbjct: 411 FPNLAQVPSGTALYGPQCRALFGVEHIRKTVVGWAAAVQVGTDASGLELRCLGHFMARFD 470

Query: 431 IGKVMELALGYQGGAKAFQKMAST-TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
            G+ +   L         + +     G          + +     +     +        
Sbjct: 471 DGQYIRDILEGDIHWVNVEALGLVPKGTKRIKEGPGHEEHDKFRGYAKTFIYAFLYGAGD 530

Query: 490 PEHAIEDLFIGTA-CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
            +          A  + +KK + +    ++ L   L +   ++ +    +   K +    
Sbjct: 531 EKIGSIIPGGNKAVGKDLKKKFMEGTPAIASLRATLEELLVESQKWVDGVAQVKWKRR-- 588

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                      +    GR +  R                            +++Q+    
Sbjct: 589 ----------WIKGLDGRKIKVRSPHA---------------------ALNSLLQSAGAL 617

Query: 609 ILAEGMMNATKA------------GYDIVLTVHDEIVCET--PDTDEFNASMLYHLMTSN 654
           +    ++   +              +  +  VHDE+      P+     A      M   
Sbjct: 618 LCKYWVVRTEQLLLERGLVHGWHGDFAYLAWVHDEMQIAARTPEIAAIIAECSQQAMREA 677

Query: 655 PS-WAKGLPLKAEGYESKRYR 674
              +A    L  E      ++
Sbjct: 678 GDFFAFRCILDTESKVGDNWK 698


>gi|47934630|gb|AAT39753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 239

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 74/242 (30%), Gaps = 54/242 (22%)

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT--------- 226
           +     E ++          G+  D   A  L    +    +++ EL+++          
Sbjct: 26  QQCRDLEHDVAKATAQQIANGFAFDFPTACNLYCEHEQRMREIEAELQAIFPPIVEERWS 85

Query: 227 ---------YGLVSSSRCLEKLKTWLFLETGL---HLEDLTETTCQRVLSSNKKLTPQAI 274
                       V +    +++   L  +  +             +  L  N+K+   A 
Sbjct: 86  EKTGKRLKDKVTVFNVASRQQVAERLAQKGAVWCDTTPSGKPKVDEATLKQNEKIAEAA- 144

Query: 275 QVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +    +   +     L   ++A+  DGR+ G +   GA  TGR +        +P  S 
Sbjct: 145 -LVLEYLTLQKRYG-MLKNWLDAVQDDGRIHGRVNTCGA-VTGRMTHSSPNMAQIPSDSL 201

Query: 335 SHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG 394
                                         R C +  EG KLV  D +G+E R+LA    
Sbjct: 202 Y-----------------------------RQCFVVPEGSKLVGIDASGLELRMLAHYMD 232

Query: 395 EQ 396
           + 
Sbjct: 233 DP 234


>gi|92115811|ref|YP_575540.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
 gi|91798705|gb|ABE61080.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14]
          Length = 206

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 56/202 (27%), Gaps = 33/202 (16%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            ID ET         G+  + +   + +      D   ++            LK+ L + 
Sbjct: 23  AIDTET--------MGLNPHRD--RLCVVQMSPGDGSADVIQIAQGQREAPNLKQLLADP 72

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQ 121
            +  + H + F+   L   F   +      CT + +R          LK +   L     
Sbjct: 73  TIVKIFHFARFDLAALSNAFG--VMPQPVYCTKIASRLIRTYTDRHGLKDLVREL----- 125

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L     K +       +   + + A      Y   DV     +  +L+ + ++
Sbjct: 126 -------LNIELSKQQQSSDWGAQTLSDAQLA------YAASDVLHLHALRDKLDAMLAR 172

Query: 182 EQELWYLDQTINDRGYCVDVAL 203
           E                  + L
Sbjct: 173 ENRTGMAQACFEFLPTRAKLDL 194


>gi|329939436|ref|ZP_08288772.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
 gi|329301665|gb|EGG45559.1| DNA polymerase I [Streptomyces griseoaurantiacus M045]
          Length = 558

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 75/541 (13%), Positives = 132/541 (24%), Gaps = 153/541 (28%)

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC----VDVALA 204
              E         +     T     R+  L + E     +   +N  G      +   + 
Sbjct: 133 MSPEDLAEVYAAQRRRTDAT-SHPDRMRLLLTSESAGMLVAAEMNAAGLPWRADIHREVL 191

Query: 205 HTLNQI------VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
             L               +L +E+ +     V        +    F   G+ +       
Sbjct: 192 RELLGERYPGGGEPTRLAELAEEVSAAFGHRV-RPDLPADVVK-AFARAGIRVGSTRRWE 249

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
            Q +        P    +   +    R  V    + ++    DGR R      G + TGR
Sbjct: 250 IQSL------DHPAVRPLLEYKR-LYRIWVAHGWSWLQNWVRDGRFRPEFHAHG-TVTGR 301

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
           W         +P+                                +R  V+A  G  LVV
Sbjct: 302 WVTNGGGALQIPK-------------------------------VIRRAVVADPGHCLVV 330

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELA 438
           AD A +E RVLA ++ +   ++     +DLY +           +     RA  K+  L 
Sbjct: 331 ADAAQLEPRVLAAISRDPGLMEVAARADDLYQSVS--------ERAFSGDRAQAKLAVLG 382

Query: 439 LGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF 498
             Y            T G  L   A L                                 
Sbjct: 383 AIYGQ----------TKGDGLKNLAAL--------------------------------- 399

Query: 499 IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNL 558
                       R++  R       + +A     E G+ +     R  P      +    
Sbjct: 400 ------------RRRFPRAVAY---VDEAAR-AGEEGRLVRTWLGRTCPPAAGAGEDAAE 443

Query: 559 ILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVS------------ 606
              +P                 + +          G      +VQ  +            
Sbjct: 444 EAGIP------------QEEAGDGSRSVPGDARARGRFARNFVVQGSAADWALLLLAALR 491

Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS-NPSWAKG-LPLK 664
           R               ++V   HDE++   P  +      +    +      A G +P++
Sbjct: 492 RGCAGLA--------AELVFFQHDEVIVHCPVEEADAVVTVLEEASRLATRLAFGEVPVR 543

Query: 665 A 665
            
Sbjct: 544 V 544


>gi|194100488|ref|YP_002003333.1| gp5 [Yersinia phage Yepe2]
 gi|193201221|gb|ACF15702.1| gp5 [Yersinia phage Yepe2]
          Length = 706

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/475 (11%), Positives = 103/475 (21%), Gaps = 130/475 (27%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             +V +    + +   L     +               VL   K   P A +        
Sbjct: 330 EHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEY 389

Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSH 336
                         N  +  +  DGR+ G++   GA  TGR +        +P   +   
Sbjct: 390 LMIQKRVGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVPSIRAAYG 448

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           E                PDP                    V  D +G+E R L       
Sbjct: 449 EPCRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRY 491

Query: 397 WKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
            + +  ET     + T  +    +      K              Y  GA          
Sbjct: 492 DEGEYVETILTGDIHTKNQMAAGLPTRDNAKTF-----NGIYGFLYGAGAAKI------- 539

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                                           +R+ K + ++  
Sbjct: 540 -------------------------------------GQIVGGTSEDGKRLIKNFLEQTP 562

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            +         A  + I       ++       V  K+      +    GR +  R    
Sbjct: 563 AI--------AALREAITGTLVKDSKWVGGEQKVTWKRR----WVRGLDGRKVHVRSPHA 610

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYD-------- 623
                                    ++Q+    I    ++       + GY         
Sbjct: 611 ---------------------ALNTLLQSAGALICKLWIVKTEEMLLEMGYKHGWDGDFC 649

Query: 624 IVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
           ++  +HDE        +   A ++  +      W          L  EG     +
Sbjct: 650 LMGWIHDEQQLACRTEEI--AKVVIEVSQQAMRWVGDHFNFRCQLDTEGKMGPNW 702


>gi|332709748|ref|ZP_08429707.1| ribonuclease D [Lyngbya majuscula 3L]
 gi|332351575|gb|EGJ31156.1| ribonuclease D [Lyngbya majuscula 3L]
          Length = 216

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 61/206 (29%), Gaps = 34/206 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET   I         Y  D  + L         V              LK+ LE 
Sbjct: 34  LAVDTETMGLI---------YQRD-RLCLVQLCDPQGRVTFVRIDKGQTEAPRLKQLLEA 83

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
           T+V  V H + F+  +L+    +D+      CT + ++          LK + + L ++ 
Sbjct: 84  TNVLKVFHFARFDVAMLRQNLGIDVNP--VFCTKIASKLARTYTSSHGLKELVKELERID 141

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                              EY   DV     + ++L  + 
Sbjct: 142 LDKSAQSSDWGN------------------VANLSDQQLEYAANDVRYLLNVRQKLINML 183

Query: 180 SKEQELWYLDQTINDRGYCVDVALAH 205
            +E       Q        V + L H
Sbjct: 184 EREDRWELAQQCFEALPTMVSLDLLH 209


>gi|47934714|gb|AAT39795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 73/223 (32%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L   +  E   ++ EL+S+                      V +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V     +   +       R    +    ++++ 
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRAAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197


>gi|47934728|gb|AAT39802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 202

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 32/171 (18%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQAIQVFNNRMRASR 285
              +    +++   L  +     +   + +    + VL+S     P+A       M   +
Sbjct: 57  EPFNPGSRQQIAERLIEKGWKPTKRTEKGSVIVDEEVLASL--DYPEAKA-LAEYMMLQK 113

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
             + ++++ +EA+  DGR+ G +   GA  TGR +        +P               
Sbjct: 114 -RIAQIDSWLEAVGKDGRVHGRVITNGA-VTGRMTHMSPNMAQVP--------------- 156

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                    +         R      +G KLV  D AG+E R+LA    +Q
Sbjct: 157 ---------NSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDQ 198


>gi|194100278|ref|YP_002003476.1| gp5 [Enterobacteria phage BA14]
 gi|193201273|gb|ACF15753.1| gp5 [Enterobacteria phage BA14]
          Length = 704

 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/476 (12%), Positives = 103/476 (21%), Gaps = 132/476 (27%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             +V +    + +   L     +               VL   K   P A +        
Sbjct: 330 EHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEY 389

Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSH 336
                         N  +  +  DGR+ G++   GA  TGR +        +P   +   
Sbjct: 390 LMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVPSIRAAYG 448

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           E                PDP                    V  D +G+E R L       
Sbjct: 449 EPCRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRY 491

Query: 397 WKLKAFETGEDLYVTTYARS-FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
            + +  ET     + T  +    +             K       Y  GA          
Sbjct: 492 DEGEYVETILTGDIHTKNQMAAGLPTRDN-------AKTFIYGFLYGAGAAKI------- 537

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                                                           +R+ K + ++  
Sbjct: 538 -------------------------------------GQIVGGTAEDGKRLIKNFLEQTP 560

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            +         A  + I       ++       V  K+      +    GR +  R    
Sbjct: 561 AI--------AALREAITGTLVKDSKWVGGEQKVTWKRR----WVRGLDGRKVHVRSPHA 608

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI------- 624
                                    ++Q+    I    ++   +    AG          
Sbjct: 609 ---------------------ALNTLLQSAGALICKLWIVETERLLLEAGLKHGWDGDFA 647

Query: 625 -VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYR 674
            +  VHDEI  +     +  A  +  L                 L  EG     ++
Sbjct: 648 YMAWVHDEI--QVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKTGANWK 701


>gi|47934608|gb|AAT39742.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 77/227 (33%), Gaps = 52/227 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L   V  E   ++ EL+S+                      V +  
Sbjct: 1   ERNGFKLDVPYAEKLMMDVMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +++   L    G+  +  TE       ++VL    +      +   + M   +  V +
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPE---AKAVAHYMMLQK-RVAQ 115

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           +++ ++A+  DGR+ G +   GA  TGR +        +P  S                 
Sbjct: 116 IDSWLKAVKDDGRVHGRVVTNGA-VTGRMTHQSPNMAQVPAVSAP--------------- 159

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                         RSC    EG  LV  D +G+E R+LA    +  
Sbjct: 160 ---------FGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDD 197


>gi|228907507|ref|ZP_04071364.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200]
 gi|228851999|gb|EEM96796.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200]
          Length = 235

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 59/221 (26%), Gaps = 52/221 (23%)

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                      + +      A   +   ++++        +E H+            +  
Sbjct: 1   MTLYGITEIGLSDQLNITKAAATSLINQFKKQLPNFLRWESETHREVLT--NGYVKDLFG 58

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
           ++R      +K   ++      S   L                 ++ R+           
Sbjct: 59  RKRRFKETILKATSSSTFKNKNSDWRL----------------EKIKRQS------CNFK 96

Query: 602 VQAVSRDILAEGMMNA--------------------------TKAGYDIVLTVHDEIVCE 635
           +Q  S   + + M+N                            +    IVL +HDE++ +
Sbjct: 97  IQGTSATQVKKAMVNLFYPTRPDGTKCLDRDEWLQENYKSILEEHDIHIVLQIHDELIFD 156

Query: 636 TPDT-DEFNASMLYHLMTSNPSWA-KGLPLKAEGYESKRYR 674
            P    +     + ++M +       G+   ++ + S  + 
Sbjct: 157 VPQDVSQDVLKKISNIMLNAIPSTHLGVTFHSDIHTSPYWG 197


>gi|86171563|ref|XP_966236.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7]
 gi|46361202|emb|CAG25066.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7]
          Length = 1444

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/405 (8%), Positives = 84/405 (20%), Gaps = 109/405 (26%)

Query: 277  FNNRMRASRSAVLKLNTLVEAMNSD-GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRS 335
                  + +     +  L + +  +  ++      +GA  TGR S      QN+      
Sbjct: 1016 IKLYRESKKLVQNYIENLPKYIQKNTNKIHCNFNQIGA-STGRLSCDQPNLQNIHSR--- 1071

Query: 336  HEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE 395
                 +    L     +D       ++ +                   I           
Sbjct: 1072 ----FRCAISLKGKEENDTHDNNNNNNNI-----------------PQIHISTNNVSTNN 1110

Query: 396  QWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                          + T  +   +       +   +       L +          +   
Sbjct: 1111 VPMNIMS---STYPLYTMNKKNLITFDYKQMELFVMA-----YLSFDEQLLKLLNYSDVF 1162

Query: 456  GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                    +     +          +     +     A   L   T    + + + Q   
Sbjct: 1163 IETAKVLFNTNDVTNELRRMTKTVIYGILYGQTENGLAKSLLISDTLASNLIENFFQFFP 1222

Query: 516  RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
             V           +    N    +  ++R +                         ++ N
Sbjct: 1223 NVYRFMQMQKFLVKHM--NCVYTLIGRKRII-----------------------LPNIKN 1257

Query: 576  NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN------------------- 616
                         R            +Q  + DI+   +++                   
Sbjct: 1258 K-----------YRISMNTP------IQGCAADIMKFSLLSCFSVLNNNIYNNNKLLKMN 1300

Query: 617  ------ATKAGY-----DIVLTVHDEIVCETPDTDEFNASMLYHL 650
                    K        +++L VHDE++ E   ++      +  L
Sbjct: 1301 NINPLIIHKNQAFLNPTNLILQVHDELLLE---SEHDATKYIIQL 1342


>gi|47934696|gb|AAT39786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 43/225 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L+  +      ++ E++ +                        +  
Sbjct: 1   ERNGFKLDVPEAQILHATLIDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              ++   L  E G   +  TET   +V  +  +                +  V  +++ 
Sbjct: 61  SRLQIGDRL-QELGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKRVGLIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++ ++              + TGR +        +P                        
Sbjct: 120 LKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP------------------------ 155

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
              +      RS     +G +L+  DL+GIE R LA    +    
Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRRLAHYMQDPEWQ 200


>gi|157866402|ref|XP_001681907.1| mitochondrial DNA polymerase I protein D [Leishmania major strain
            Friedlin]
 gi|68125206|emb|CAJ03183.1| putative mitochondrial DNA polymerase I protein D [Leishmania major
            strain Friedlin]
          Length = 1577

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/412 (11%), Positives = 98/412 (23%), Gaps = 88/412 (21%)

Query: 260  QRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNT------LVEAMNSDGRLRGTLQFLG 312
            +  LS  K      A  V        +       +      +V  ++S            
Sbjct: 1192 EDTLSYFKSNHNDSAASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHN 1251

Query: 313  ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
             + TGR +      QN+P+  +S                            +R   I+  
Sbjct: 1252 KTNTGRLASANPNCQNIPKEDKS---------------------------SLRDMFISRF 1284

Query: 373  GKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            G K   + AD + +E   LA +A ++  L+      D +           P     D   
Sbjct: 1285 GDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQ 1341

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              K +                                      +     +F R       
Sbjct: 1342 RAKKI-----------------------------KEPEFVKLRQQAKIFSFQRQYGAGVR 1372

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
              +            + +   + +  V      +  +      +  A +    R+V    
Sbjct: 1373 MLSQSTGLTQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQ 1428

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
              K    +     +G   V+ +       L                L    VQ  + +I+
Sbjct: 1429 FFKGMFPV----LTGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIV 1484

Query: 611  AEGMMNA----------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651
             + M+                  +  TVHD +  +   +     +     +M
Sbjct: 1485 -QVMLGVLWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1535



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 91/306 (29%), Gaps = 68/306 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----LWD----------- 46
             L +D ET + I   K     + ++  V+L         V      +D           
Sbjct: 466 RYLIVDLETTT-IRRYKRIANPFTKENYVVLSGARDYKGNVFMPRRYFDRSIAMRYDDPS 524

Query: 47  CVHDPVMPQV------LKEALENTDVTIVAHNSYFER-TVLKACFNLDI--PIHRWICTL 97
                 + +           L+  DV  V HN  F+   + +            +   T+
Sbjct: 525 VTSQNHLVEKSSKDSLFLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWDTM 583

Query: 98  VLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                        G  + L+ V ++    + K++  K               +   K  +
Sbjct: 584 YGEYLLTGHEVKLGHGAGLEDVAKSYGGQTMKLDAVKR-------------AWAEGKETY 630

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------TINDRGYCVDV 201
              + +  EY  GD+  T  IF +    + +++++               +   G   +V
Sbjct: 631 EIPYSILTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGLKTNV 690

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLV-------SSSRCLEKLKTWLFLETGLHLEDL 254
            LA   +  +  + ++L ++LE      +        +    + L T  F         L
Sbjct: 691 DLAQRQSNELMTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITLFF------GGKL 744

Query: 255 TETTCQ 260
           T +T  
Sbjct: 745 TLSTNA 750


>gi|228969100|ref|ZP_04130014.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|229073434|ref|ZP_04206570.1| DNA polymerase I (POL I) [Bacillus cereus F65185]
 gi|228709741|gb|EEL61779.1| DNA polymerase I (POL I) [Bacillus cereus F65185]
 gi|228790589|gb|EEM38276.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 235

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 59/221 (26%), Gaps = 52/221 (23%)

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                      + +      A   +   ++++        +E H+            +  
Sbjct: 1   MTLYGITEIGLSDQLNITKAAATSLINQFKKQLPNFLRWESETHREVLT--NGYVKDLFG 58

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
           ++R      +K   ++      S   L                 ++ R+           
Sbjct: 59  RKRRFKETILKATSSSTFKNKNSDWRL----------------EKIKRQS------CNFK 96

Query: 602 VQAVSRDILAEGMMNA--------------------------TKAGYDIVLTVHDEIVCE 635
           +Q  S   + + M+N                            +    IVL +HDE++ +
Sbjct: 97  IQGTSATQVKKAMVNLFYPTRPDGTKCLDRDEWLQENYKSILEEHDIHIVLQIHDELIFD 156

Query: 636 TPDT-DEFNASMLYHLMTSNPSWA-KGLPLKAEGYESKRYR 674
            P    +     + ++M +       G+   ++ + S  + 
Sbjct: 157 VPQDVSQDVLKEISNIMLNAIPSTHLGVTFHSDIHTSPYWG 197


>gi|30387474|ref|NP_848283.1| DNA polymerase [Yersinia pestis phage phiA1122]
 gi|30314111|gb|AAP20519.1| DNA polymerase [Yersinia pestis phage phiA1122]
          Length = 704

 Score = 82.5 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 74/692 (10%), Positives = 160/692 (23%), Gaps = 131/692 (18%)

Query: 67  TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNGL-------------- 105
            IV HN   ++   L             +P    I TLVL+R                  
Sbjct: 55  LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGK 114

Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                    AL+A G  L     + ++  + +      E  + +   N            
Sbjct: 115 LPGKRFGSHALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYIDGMEWWNFN------EEMM 168

Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193
           +Y   DV VT+ +                         +         E    +L     
Sbjct: 169 DYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDVEHRAAWLLAKQE 228

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G+  D      L   +   R++L ++L              E         TG  L  
Sbjct: 229 RNGFPFDTKAIEELYVELAARRSELLRKLTETFGLWYQPKGGTEIF---CHPRTGKPLPK 285

Query: 254 ----LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRG 306
                        ++  +  ++   +  +  + R   + +    +  +V   +S   ++ 
Sbjct: 286 YPRIKIPKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQK 344

Query: 307 TLQFLGA-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            LQ  G      +  G         + +       +    +I              +   
Sbjct: 345 KLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDK 404

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
             +R   +A +GK     +  G              ++    +           + +   
Sbjct: 405 AWLR--YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHH-L 461

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKM-----ASTTGLNLNTFAHLVKTNSAPEEWE 476
            ++T        +    L  +  A    +      A           + +       +  
Sbjct: 462 DEITGKPWVQAGIDASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNA 521

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
               +         +            + +KK + +    ++ L   + Q   ++ +   
Sbjct: 522 KTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVA 581

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                K +               +    GR +  R   +                     
Sbjct: 582 GEQQVKWKRR------------WIKGLDGRKVHVRSPHS--------------------- 608

Query: 597 LTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNA 644
               ++Q+    I    ++       + G           +  VHDEI       +    
Sbjct: 609 ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQV 668

Query: 645 --SMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673
                   M      W     L  EG     +
Sbjct: 669 VIDTAQEAMRWVGDHWNFRCLLDTEGKMGPNW 700


>gi|220925751|ref|YP_002501053.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
 gi|219950358|gb|ACL60750.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060]
          Length = 204

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 58/204 (28%), Gaps = 33/204 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+  + +   + +      D   ++         P VLK  L +
Sbjct: 20  IAVDTET--------LGLEPHRD--RLCVVQISHGDGEADVVQIPKIGPEPVVLKRVLTD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             VT + H + F+  VL       +      CT V +R          LK +   L    
Sbjct: 70  PAVTKIFHYARFDLAVLYHRLG--VMPGPVYCTKVASRLARTYTDRHGLKDLVREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +             +        Y   DV     +  +L+ + +
Sbjct: 124 --------LGVELSKQQQSSDWGADTLTPAQID------YAASDVLHLHALRAKLDAMLA 169

Query: 181 KEQELWYLDQTINDRGYCVDVALA 204
           +E+     +           + L 
Sbjct: 170 REERTDMAEACFAFLPTRARLDLL 193


>gi|293571803|ref|ZP_06682819.1| DNA polymerase I [Enterococcus faecium E980]
 gi|291608057|gb|EFF37363.1| DNA polymerase I [Enterococcus faecium E980]
          Length = 562

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 61/236 (25%), Gaps = 22/236 (9%)

Query: 29  CVILFAFGFDDHPVELW--DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
            ++     +          D        Q     + + +     +++      L      
Sbjct: 335 EIVGV--AWGTEKKIYVTNDLSVFEN--QAFHSWITDPNRLKKVYDAKRTYVALNRYTG- 389

Query: 87  DIPIHRW-ICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                      L+ A           ++ +      +  + +E              + L
Sbjct: 390 --KTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDE------TVYGKGAKKGL 441

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY--LDQTINDRGYCVD 200
            +  +       R           +++E+  + +    ++ EL    +   +   G  VD
Sbjct: 442 PEEEELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELPLSIILAEMEISGIKVD 501

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
                 +         +++Q++         +    ++L   LF + GL +    +
Sbjct: 502 ATRLQEMKGEFSARLREIEQKIYEEAG-EEFNLNSPKQLGVILFEKMGLPVIKKQK 556


>gi|326536127|ref|YP_004300559.1| gp5 [Enterobacteria phage 285P]
 gi|256861516|gb|ACV32472.1| gp5 [Enterobacteria phage 285P]
          Length = 704

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/475 (12%), Positives = 100/475 (21%), Gaps = 130/475 (27%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             +V +    + +   L     +               VL   K   P A +        
Sbjct: 330 EHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEY 389

Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSH 336
                         N  +  +  DGR+ G++   GA  TGR +        +P   +   
Sbjct: 390 LMIQKRIGQVAEGDNGWLRMIGDDGRIHGSVNPNGA-VTGRATHSFPNVAQVPSIRAAYG 448

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           E                PDP                    V  D +G+E R L       
Sbjct: 449 EPCRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRY 491

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
            + +  ET                        R   K       Y  GA           
Sbjct: 492 DEGEYVETILTGD------IHTKNQLAAGLPTRDNAKTFIYGFLYGAGAAKI-------- 537

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                                          +R+ K + ++   
Sbjct: 538 ------------------------------------GQIVGGTAEDGKRLIKNFLEQTPA 561

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +         A  + I       ++       V  K+      +    GR +  R     
Sbjct: 562 I--------AALREAITGTLVKDSKWVGGEQKVTWKRR----WVRGLDGRKVHVRSPHA- 608

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI-------- 624
                                   ++Q+    I    ++   +    AG           
Sbjct: 609 --------------------ALNTLLQSAGALICKLWIVETERLLLEAGLKHGWDGDFAY 648

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYR 674
           +  VHDEI  +     +  A  +  L                 L  EG     ++
Sbjct: 649 MAWVHDEI--QVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKTGANWK 701


>gi|294630609|ref|ZP_06709169.1| DNA polymerase I [Streptomyces sp. e14]
 gi|292833942|gb|EFF92291.1| DNA polymerase I [Streptomyces sp. e14]
          Length = 566

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 120/475 (25%), Gaps = 155/475 (32%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +L  E+ +     V       ++    F   G+ +        + V        P 
Sbjct: 198 RRLAELADEVSAAFGHRV-RPDLPAEVVK-AFARAGVKVRSTRRWELRSV------DHPA 249

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +   +    R  V    + ++    +GR R      G + TGRW         +P+ 
Sbjct: 250 VEPLLEYKR-LYRIWVAHGWSWLQDWVREGRFRPEF-LAGGTVTGRWVTNGGGALQIPK- 306

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R  V+A  G +LVVAD   +E RVLA +
Sbjct: 307 ------------------------------VIRRAVVADPGWRLVVADADQMEPRVLAAI 336

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   ++      DLY +   R+F           RA  K+  L   Y           
Sbjct: 337 SRDPGLMEVAGRTSDLYQSVSDRAFAGD--------RAQAKLAVLGAVY----------G 378

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            T+G  L   A L                                             R+
Sbjct: 379 QTSGDGLKNLAAL---------------------------------------------RR 393

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP--------- 563
           +  R       + +A     E G+ +     R  P      +       LP         
Sbjct: 394 RFPRAVAY---VDEAAR-AGEEGRLVRTWLGRTCPPAAANSEDATQEAGLPQDDPAERPG 449

Query: 564 --SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA---------------VS 606
             SG          +R +L        R    G      +VQ                  
Sbjct: 450 GGSGDR-----TNGDRGWLPGYASSDARAR--GRFARNFVVQGSAADWALLLLAALRRTC 502

Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGL 661
           RD+             ++V   HDE++   P  +          +      A  L
Sbjct: 503 RDMA-----------AELVFFQHDEVIVHCPKEEADTV---VEAIREAAELAGRL 543


>gi|47934712|gb|AAT39794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV+ A  L   +  E   ++ EL+S+                      V +  
Sbjct: 1   ERNGFKLDVSYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V     +   +       R    +  V ++++ 
Sbjct: 61  SRKQIAERL-QGLGVKFDKKTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNVLVGIDASGLELRMLARYMDDED 197


>gi|212671402|ref|YP_002308401.1| DNA polymerase [Kluyvera phage Kvp1]
 gi|211997246|gb|ACJ14563.1| DNA polymerase [Kluyvera phage Kvp1]
          Length = 704

 Score = 81.7 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/475 (12%), Positives = 100/475 (21%), Gaps = 130/475 (27%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             +V +    + +   L     +               VL   K   P A +        
Sbjct: 330 EHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKEY 389

Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR-PSRSH 336
                         N  +  +  DGR+ G++   GA  TGR +        +P   +   
Sbjct: 390 LMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVPSIRAAYG 448

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           E                PDP                    V  D +G+E R L       
Sbjct: 449 EPCRAAFGAEHNMKDGKPDP-----------------WIQVGVDASGLELRCLGHFMYRY 491

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
            + +  ET                        R   K       Y  GA           
Sbjct: 492 DEGEYVETILTGD------IHTKNQLAAGLPTRDNAKTFIYGFLYGAGAAKI-------- 537

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                                          +R+ K + ++   
Sbjct: 538 ------------------------------------GQIVGGTAEDGKRLIKNFLEQTPA 561

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           +         A  + I       ++       V  K+      +    GR +  R     
Sbjct: 562 I--------AALREAITGTLVKDSKWVGGEQKVTWKRR----WVRGLDGRKVHVRSPHA- 608

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI-------- 624
                                   ++Q+    I    ++   +    AG           
Sbjct: 609 --------------------ALNTLLQSAGALICKLWIVETERLLLEAGLKHGWDGDFAY 648

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYR 674
           +  VHDEI  +     +  A  +  L                 L  EG     ++
Sbjct: 649 MAWVHDEI--QVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKTGANWK 701


>gi|47934738|gb|AAT39807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 81.7 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 70/223 (31%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D   A  L   +  E   ++ EL+S+                      + +  
Sbjct: 1   ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                 R    +  V ++ + 
Sbjct: 61  SRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVAQIGSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           ++A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RSC    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197


>gi|254422868|ref|ZP_05036586.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335]
 gi|196190357|gb|EDX85321.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335]
          Length = 207

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 58/204 (28%), Gaps = 34/204 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET     L             + L         V              LK+ LE 
Sbjct: 25  IAVDTETMGLNPLRD----------RLCLIQLCDPGGYVCAIRTERGQSSAPNLKQLLEE 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA---RSNGLPSALKAVGEAL-KLS 119
            ++T + H + F+   L+    +        CT + +   R+      LK++ + L  + 
Sbjct: 75  KNITKIFHFARFDLATLQHHLGIVTAP--VFCTKIASKIARTYSPSHGLKSLVKELIGIE 132

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                               Y   DV     +  +L  + 
Sbjct: 133 LDKSQQSSDWGN------------------AAALSDEQLSYAANDVRYLYVLQNKLTEML 174

Query: 180 SKEQELWYLDQTINDRGYCVDVAL 203
            +E       Q ++     V++ L
Sbjct: 175 KREGRWTLAKQCLDCLPVFVELDL 198


>gi|37956721|gb|AAP33990.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 72/694 (10%), Positives = 156/694 (22%), Gaps = 135/694 (19%)

Query: 67  TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNGL-------------- 105
            IV HN   ++   L             +P    I TLVL+R                  
Sbjct: 55  LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMSLLRSGK 114

Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                     L+A G  L     + ++  + +      E  + +   N            
Sbjct: 115 LPGKRFGSHTLEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMM 168

Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193
           +Y   DV VT+ +                         +         E    +L     
Sbjct: 169 DYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDIGYTTFWSESLEAVDIEHRAAWLLAKQE 228

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G+  D      L   +   R++L ++L              E        +       
Sbjct: 229 RNGFPFDTKAIEELYVELASRRSELLRKLTETFGSWYQPKGGTEMFCHPRTDKPLPKYPR 288

Query: 254 -LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             T       ++  +  ++   +  +  + R   + +    +  +V   +S   ++  LQ
Sbjct: 289 IKTPKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQ 347

Query: 310 FLGA-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             G      +  G         + +       +    +I              +     +
Sbjct: 348 EAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWL 407

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYARSF 417
           R   +A +GK     +  G              ++ +  +                    
Sbjct: 408 R--YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPSVRSPYGEQCRAAFGAEHHLDGIT 465

Query: 418 NVAPAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
                Q   D       +EL  L +        + A           + +       +  
Sbjct: 466 GKPWVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNA 521

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
               +         +            + +KK + +    ++ L   + Q   ++ +   
Sbjct: 522 KTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLKNTPAIAALRESIQQTLVESFQWVA 581

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                K +               +    GR +  R                         
Sbjct: 582 GEQQVKWKRR------------WIKGLDGRKIHVRSPHA--------------------- 608

Query: 597 LTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNA 644
               ++Q+    I    ++       + G           +  VHDEI       +    
Sbjct: 609 ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQV 668

Query: 645 SMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
             +         W          L  EG     +
Sbjct: 669 --VIETAQEAMRWVGDHWNFRCLLDTEGKMGLNW 700


>gi|313760827|gb|ADR79390.1| DNA polymerase [T7-like bacteriophage Eptesicus
           fuscus/P1/IT/USA/2009]
          Length = 713

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/453 (11%), Positives = 98/453 (21%), Gaps = 125/453 (27%)

Query: 230 VSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQAIQVFNN------R 280
             +    + L   L           +          L   K   P A             
Sbjct: 335 EFNPNSNDHLIKVLTDRGWEPTEFTDKGNPKCDDETLEYVKLKDPVAQHCLELVRKYLVI 394

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +    A       ++ + SDGR+ G++   GA  TGR +        +P   + H E  
Sbjct: 395 QKLIAQAAEGKQAWLKNVKSDGRVHGSINPCGA-VTGRATHSSPNMAQVPANGKLHGETC 453

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA------- 393
           +       +                      +    V  D +G+E R L   A       
Sbjct: 454 RGAFGAHHNKKDGK----------------PDPWIQVGVDASGLELRCLGHFAAPYDGGE 497

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA-IGKVMELALGYQGGAKAFQKMA 452
             +  L       +      A +          D      K    A  Y  GA       
Sbjct: 498 YAENVLNGDIHWTNAVNAGLAPNVPRDKEDHYHDACRNNAKTFIYAFLYGAGAAKI---- 553

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                                                              + + K + +
Sbjct: 554 ----------------------------------------GSIVGGHAKEGKELTKKFME 573

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
               +  L   +  A   + +     +  K +               L    GR +  R 
Sbjct: 574 GTPAIKSLREGIASALVSSEKWVDGEMQVKWKRR------------WLKGLDGRKVHVRS 621

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDI---- 624
             +                         ++Q+    I  + ++   K    AGY      
Sbjct: 622 PHS---------------------ALNTLLQSAGALICKKWIVEVEKAMIAAGYKHGWDG 660

Query: 625 ----VLTVHDEIVCETPDTDEFN--ASMLYHLM 651
               +  VHDE+       +       +   +M
Sbjct: 661 DFAYMAWVHDELQIACRTQEIAEHCVQIAQDVM 693



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 70/257 (27%), Gaps = 66/257 (25%)

Query: 7   DFETRSPIDLT---KCGICKYAEDVCVILFAFGFDDHPVELWDCVH----DPVMPQVLKE 59
           D ET   +D      CG+   A     + +          +              + L+ 
Sbjct: 6   DIETDGLLDTVSQFHCGVMINAGTRETLKYG---------VIPMTGIVGGFKEYVEKLEA 56

Query: 60  ALENTDVTIVAHN-SYFERTVLK----ACFN--LDIPIHRWICTLVLARSNGLP------ 106
              + D  +V HN   ++   +K      F   L+    + + TLVL+R           
Sbjct: 57  ISASPDGMVVFHNGINYDIPAIKILKKKYFGKNLNFNKAKMVDTLVLSRLMFANLKDKDL 116

Query: 107 ---------------SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                           +L+A G  L        E K+     CK +  E           
Sbjct: 117 GLIRSGKLAGKFWGRHSLEAWGYRLGEMK---GEYKDDFKAMCKEKGIEYKAG---DEWL 170

Query: 152 EAWRLFGEYCKGDVTVTREIF----------------KRLEPLSSKEQELWYLDQTINDR 195
              +   +Y   DV VT ++F                         E E  ++   +   
Sbjct: 171 TPSQEMLDYNVQDVVVTLKLFERFLTDKYYFPEGETNWEAIESIKLEHEAQWVCSKMERN 230

Query: 196 GYCVDVALAHTLNQIVD 212
           G+  DV     +   + 
Sbjct: 231 GFPTDVEALEKMYHDLQ 247


>gi|261334251|emb|CBH17245.1| mitochondrial DNA polymerase I protein D,putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1629

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/428 (10%), Positives = 104/428 (24%), Gaps = 87/428 (20%)

Query: 236  LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLN- 292
              +L     +              +  L+  KK      A  +   R    +        
Sbjct: 1220 PSQLDAEQVMRKFRSPTTRQLQVGEDSLTYFKKTHGDKTAETILELR-AMEKLIGTYYEN 1278

Query: 293  -----TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                  +V  ++ D            + TGR +      QN+P+  +S            
Sbjct: 1279 TDDGTGMVSLVHDDDSCIHHELIHNKTNTGRLASANPNCQNIPKEDKS------------ 1326

Query: 348  TSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                            +R   ++  G+K   + AD + +E   LA +A +Q  L+   + 
Sbjct: 1327 ---------------PLREMFVSRYGEKGMCIEADYSQLEVVALAVLANDQQMLEDLRSN 1371

Query: 406  EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
             D +    A      P     +     K                                
Sbjct: 1372 VDFHCKRVAMMR---PDLQYTEILKKAK-----------------------------KDK 1399

Query: 466  VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                    +     +F R         +            + +  R+ +  V    + + 
Sbjct: 1400 EPEFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQDQVRHLIEKERETYRGVDVFNSMV- 1458

Query: 526  QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                   +   ++    R        K      +  + +G   ++ +       L   + 
Sbjct: 1459 --ALSANKFDASLQNGSRNVRGHQIFK-----GMFPVITGSRYIFTESDVPEGLLRNKSL 1511

Query: 586  QLTREYTYGGKLTENIVQAVSRDILAEGM-------MNATKAG--YDIVLTVHDEIVCET 636
             +         L    VQ  + +I+   +       +     G    ++ TVHD +  + 
Sbjct: 1512 AVKSTNFSPTHLKNYPVQGFAGEIVQIMLGVLWRHFLRKDNYGGLAVLINTVHDCVWIDC 1571

Query: 637  PDTDEFNA 644
                  + 
Sbjct: 1572 HMDVLQDV 1579



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 92/292 (31%), Gaps = 66/292 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVIL--------------------FAFGFDDHP 41
             L +D ET + +   K     + ++  V+L                     A  +DD  
Sbjct: 521 RYLVVDLETTT-VRRYKRVANPFTKENYVVLSGARDYRGQVFMPSRYYSRNVALRYDDLH 579

Query: 42  VE-LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-----PIHRWIC 95
           V      V       +    L++ DV  V HN  F+   L    ++++        +   
Sbjct: 580 VTSTHSLVKGSSKHSLFLPPLDDYDVL-VGHNIKFDL--LHMWRDVELRRFLKRGGKIWD 636

Query: 96  TLVLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
           T+             G  + L+ V ++    + K++  K               +   K 
Sbjct: 637 TMYAEYLLTGHEVKLGHGAGLEEVAKSYGGQTPKLDAVK-------------QAWSSGKD 683

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------TINDRGYCV 199
                +R   +Y  GD+  T  IFK+    +  ++++  +            +   G   
Sbjct: 684 TCEIPYRTLTQYLHGDLENTELIFKKHIERALAQRQVVIILARMDGLLCTTEMEYNGLKT 743

Query: 200 DVALAHTLNQIVDVERTKLDQEL-------ESLTYGLVSSSRCLEKLKTWLF 244
           +V LA + +  +  +  +L + L        S+      +    + L  + F
Sbjct: 744 NVQLALSQSNELMCKVKELRRHLDNSIPKEISIDCRKYFNWASNQHLIAFFF 795


>gi|71754987|ref|XP_828408.1| mitochondrial DNA polymerase I protein D [Trypanosoma brucei TREU927]
 gi|21929665|gb|AAM81965.1|AF445379_1 DNA polymerase I-like protein D [Trypanosoma brucei]
 gi|70833794|gb|EAN79296.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
            brucei]
          Length = 1629

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/428 (10%), Positives = 104/428 (24%), Gaps = 87/428 (20%)

Query: 236  LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ--AIQVFNNRMRASRSAVLKLN- 292
              +L     +              +  L+  KK      A  +   R    +        
Sbjct: 1220 PSQLDAEQVMRKFRSPTTRQLQVGEDSLTYFKKTHGDKTAETILELR-AMEKLIGTYYEN 1278

Query: 293  -----TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
                  +V  ++ D            + TGR +      QN+P+  +S            
Sbjct: 1279 TDDGTGMVSLVHDDDSCIHHELIHNKTNTGRLASANPNCQNIPKEDKS------------ 1326

Query: 348  TSITSDPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                            +R   ++  G+K   + AD + +E   LA +A +Q  L+   + 
Sbjct: 1327 ---------------PLREMFVSRYGEKGMCIEADYSQLEVVALAVLANDQQMLEDLRSN 1371

Query: 406  EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
             D +    A      P     +     K                                
Sbjct: 1372 VDFHCKRVAMMR---PDLQYTEILKKAK-----------------------------KDK 1399

Query: 466  VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELH 525
                    +     +F R         +            + +  R+ +  V    + + 
Sbjct: 1400 EPEFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQDQVRHLIEKERETYRGVDVFNSMV- 1458

Query: 526  QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTR 585
                   +   ++    R        K      +  + +G   ++ +       L   + 
Sbjct: 1459 --ALSANKFDASLQNGSRNVRGHQIFK-----GMFPVITGSRYIFTESDVPEGLLRNKSL 1511

Query: 586  QLTREYTYGGKLTENIVQAVSRDILAEGM-------MNATKAG--YDIVLTVHDEIVCET 636
             +         L    VQ  + +I+   +       +     G    ++ TVHD +  + 
Sbjct: 1512 AVKSTNFSPTHLKNYPVQGFAGEIVQIMLGVLWRHFLRKDNYGGLAVLINTVHDCVWIDC 1571

Query: 637  PDTDEFNA 644
                  + 
Sbjct: 1572 HMDVLQDV 1579



 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 92/292 (31%), Gaps = 66/292 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVIL--------------------FAFGFDDHP 41
             L +D ET + +   K     + ++  V+L                     A  +DD  
Sbjct: 521 RYLVVDLETTT-VRRYKRVANPFTKENYVVLSGARDYRGQVFMPSRYYSRNVALRYDDLH 579

Query: 42  VE-LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI-----PIHRWIC 95
           V      V       +    L++ DV  V HN  F+   L    ++++        +   
Sbjct: 580 VTSTHSLVKGSSKHSLFLPPLDDYDVL-VGHNIKFDL--LHMWRDVELRRFLKRGGKIWD 636

Query: 96  TLVLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
           T+             G  + L+ V ++    + K++  K               +   K 
Sbjct: 637 TMYAEYLLTGHEVKLGHGAGLEEVAKSYGGQTPKLDAVK-------------QAWSSGKD 683

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------TINDRGYCV 199
                +R   +Y  GD+  T  IFK+    +  ++++  +            +   G   
Sbjct: 684 TCEIPYRTLTQYLHGDLENTELIFKKHIERALAQRQVVIILARMDGLLCTTEMEYNGLKT 743

Query: 200 DVALAHTLNQIVDVERTKLDQEL-------ESLTYGLVSSSRCLEKLKTWLF 244
           +V LA + +  +  +  +L + L        S+      +    + L  + F
Sbjct: 744 NVQLALSQSNELMCKVKELRRHLDNSIPKEISIDCRKYFNWASNQHLIAFFF 795


>gi|37956773|gb|AAP34041.1| gene 5 [Enterobacteria phage T7]
          Length = 704

 Score = 81.7 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 71/694 (10%), Positives = 156/694 (22%), Gaps = 135/694 (19%)

Query: 67  TIVAHNS-YFERTVLKACFN------LDIPIHRWICTLVLARSNGL-------------- 105
            IV HN   ++   L             +P    I TLVL+R                  
Sbjct: 55  LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMSLLRSGK 114

Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                     L+A G  L     + ++  + +      E  + +   N            
Sbjct: 115 LPGKRFGSHTLEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFN------EEMM 168

Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193
           +Y   DV VT+ +                         +         E    ++     
Sbjct: 169 DYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDIGYTTFWSESLEAVDIEHRAAWMLAKQE 228

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G+  D      L   +   R++L ++L              E        +       
Sbjct: 229 RNGFPFDTKAIEELYVELASRRSELLRKLTETFGSWYQPKGGTEMFCHPRTDKPLPKYPR 288

Query: 254 -LTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
             T       ++  +  ++   +  +  + R   + +    +  +V   +S   ++  LQ
Sbjct: 289 IKTPKVGGIFKKPKNKAQREGREPCE-LDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQ 347

Query: 310 FLGA-----SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCV 364
             G      +  G         + +       +    +I              +     +
Sbjct: 348 EAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWL 407

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV-------TTYARSF 417
           R   +A +GK     +  G              ++ +  +                    
Sbjct: 408 R--YVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPSVRSPYGEQCRAAFGAEHHLDGIT 465

Query: 418 NVAPAQVTKDQRAIGKVMEL-ALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
                Q   D       +EL  L +        + A           + +       +  
Sbjct: 466 GKPWVQAGID----ASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNA 521

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
               +         +            + +KK + +    ++ L   + Q   ++ +   
Sbjct: 522 KTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLKNTPAIAALRESIQQTLVESFQWVA 581

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                K +               +    GR +  R                         
Sbjct: 582 GEQQVKWKRR------------WIKGLDGRKIHVRSPHA--------------------- 608

Query: 597 LTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNA 644
               ++Q+    I    ++       + G           +  VHDEI       +    
Sbjct: 609 ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQV 668

Query: 645 SMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
             +         W          L  EG     +
Sbjct: 669 --VIETAQEAMRWVGDHWNFRCLLDTEGKMGLNW 700


>gi|47934644|gb|AAT39760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 54/225 (24%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+  D   A  +++      T ++ +L+ +   ++                   +  
Sbjct: 1   ERNGFAFDFPRACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L  +  +             ++ L  N  + P+A  V    +  S+  +  +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            + ++A+  DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                        RSC    EG KLV  D +G+E R+LA    + 
Sbjct: 161 -------------RSCFTVDEGNKLVGIDASGLELRMLAHYMDDP 192


>gi|47934656|gb|AAT39766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 54/225 (24%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+  D  +A  +++      T ++ +L+ +   ++                   +  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L  +  +             ++ L  N  + P+A  V    +  S+  +  +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            + ++A+  DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                        RSC   ++G KLV  D +G+E R+LA    + 
Sbjct: 161 -------------RSCFTVADGNKLVGIDASGLELRMLAHYMDDP 192


>gi|119960534|ref|YP_949044.1| DNA polymerase I [Arthrobacter aurescens TC1]
 gi|119947393|gb|ABM06304.1| putative DNA polymerase I [Arthrobacter aurescens TC1]
          Length = 563

 Score = 81.3 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 67/470 (14%), Positives = 115/470 (24%), Gaps = 140/470 (29%)

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            EL ++      +    + L   L    G+ +    ++T Q  L       P    +   
Sbjct: 218 AELRNILNSPSLNPDSPQDLMRALH-RNGIEV----KSTRQWELQE--SKHPAIQPLLAY 270

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
             + SR       + ++A   DGR       +G   +GRW+        +PR        
Sbjct: 271 -KKLSRLHTANGWSWLDAWVRDGRFHPEY-VVGGVVSGRWASRGGGALQIPRN------- 321

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R+ V A  G KL+VAD + +E RVL  +A +    
Sbjct: 322 ------------------------IRAAVHADPGHKLIVADASQLEPRVLVALAQDTKMA 357

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
           +A               +    AQ     RA  K+  L   Y                  
Sbjct: 358 EAARD---------KDLYAGIAAQGFGGDRAKAKIALLGAVYGATTG------------- 395

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                          +  A  F                 +G +       W +       
Sbjct: 396 ---ESGRLMPQLTRTYPRAVGFVEQAAREGEAGRTVTTRLGRSSPPPSAGWLRS------ 446

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                 Q      E  +A    + R                                   
Sbjct: 447 ------QQSTTAEEQRRADNLARSRGRFTRNF---------------------------- 472

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----------AGYDIVLTVH 629
                                +VQ  + +  A  +    +          A  ++V  +H
Sbjct: 473 ---------------------VVQGSAAEWAACWLAELRRRLRALRAEGSAAGELVFFLH 511

Query: 630 DEIVCETPDTDEFN-ASMLYHLMTSNPSWAKG-LPLK--AEGYESKRYRK 675
           DE++   PD       S +    T+      G +P++          Y K
Sbjct: 512 DEVMVHAPDDAVDACISAIEEAATAAKELMFGRIPVEFPVSVAVVDSYDK 561


>gi|47934648|gb|AAT39762.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934652|gb|AAT39764.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934664|gb|AAT39770.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 54/225 (24%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+  D  +A  +++      T ++ +L+ +   ++                   +  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L  +  +             ++ L  N  + P+A  V    +  S+  +  +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            + ++A+  DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                        RSC   ++G KLV  D +G+E R+LA    + 
Sbjct: 161 -------------RSCFTVADGNKLVGIDASGLELRMLAHYMDDP 192


>gi|170078658|ref|YP_001735296.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
 gi|157811866|gb|ABV80286.1| ribonuclease D [Synechococcus sp. PCC 7002]
 gi|169886327|gb|ACB00041.1| putative ribonuclease D [Synechococcus sp. PCC 7002]
          Length = 207

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 26/201 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  Y +   + L     D   V              LK  +E 
Sbjct: 25  IAIDTET--------MGLNPYRD--RLCLVQLCDDAGYVSAIRIAQGQTAAPNLKALMEA 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            ++T V H + F+   L+  F ++     + CT + +               L  +    
Sbjct: 75  PEITKVFHFARFDLAQLRHVFGIETRP--FFCTKIAS--------------KLGRTYTSS 118

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K L+      E  +     +  N         +Y   DV     + ++L  +  +E 
Sbjct: 119 HGLKALVKELMGVELDKSAQSSDWGNVAVLSAEQLKYASNDVRYLIPMMRKLTAMLQREN 178

Query: 184 ELWYLDQTINDRGYCVDVALA 204
               +++ +      + + LA
Sbjct: 179 RWPLMEECLRCLPTFISLDLA 199


>gi|240139043|ref|YP_002963518.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
 gi|240009015|gb|ACS40241.1| 3'-5' exonuclease [Methylobacterium extorquens AM1]
          Length = 209

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 37/205 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++         P+ LK  L +
Sbjct: 25  IAIDTET--------LGLNPHRD--RLCVVQVSRGDGSADVVQIRPGDPAPERLKAVLAD 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             V  + H + F+  VL   F   +      CT + ++          LK V   L  + 
Sbjct: 75  AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVRELVGVD 132

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                      +        Y   DV       +RL+ + 
Sbjct: 133 LSKQQQSSDW-------------GAGTLSQAQID------YAASDVLHLHAARERLDAML 173

Query: 180 --SKEQELWYLDQTINDRGYCVDVA 202
                 E+             +D+A
Sbjct: 174 AREGRTEMAQACFDFLPTRSKLDLA 198


>gi|47934646|gb|AAT39761.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 76/225 (33%), Gaps = 54/225 (24%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G   D  +A  +++      T ++ +L+ +   ++                   +  
Sbjct: 1   ERNGSAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L  +  +             ++ L  N  + P+A  V    +  S+  +  +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            + ++A+  DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                        RSC   ++G KLV  D +G+E R+LA    + 
Sbjct: 161 -------------RSCFTVADGNKLVGIDASGLELRMLAHYMDDP 192


>gi|47934654|gb|AAT39765.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 54/225 (24%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+  D  +A  +++      T ++ +L+ +   ++                   +  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L  +  +             ++ L  N  + P+A  V    +  S+  +  +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            + ++A+  DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                        RSC   ++G KLV  D +G+E R+LA    + 
Sbjct: 161 -------------RSCFTVADGNKLVGIDASGLELRMLAHYIDDP 192


>gi|254561638|ref|YP_003068733.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
 gi|254268916|emb|CAX24877.1| 3'-5' exonuclease [Methylobacterium extorquens DM4]
          Length = 209

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 37/205 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++         P+ LK  L +
Sbjct: 25  IAIDTET--------LGLNPHRD--RLCVVQVSRGDGSADVVQIRPGDPAPERLKAVLAD 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             V  + H + F+  VL   F   +      CT + ++          LK V   L  + 
Sbjct: 75  AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVRELVGVD 132

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                      +        Y   DV       +RL+ + 
Sbjct: 133 LSKQQQSSDW-------------GAGTLSQAQID------YAASDVLHLHAARERLDAML 173

Query: 180 --SKEQELWYLDQTINDRGYCVDVA 202
                 E+             +D+A
Sbjct: 174 AREGRTEMAQACFDFLPTRSKLDLA 198


>gi|17570811|ref|NP_523320.1| DNA polymerase [Enterobacteria phage T3]
 gi|118853|sp|P20311|DPOL_BPT3 RecName: Full=DNA polymerase
 gi|15702|emb|CAA35140.1| 5 [Enterobacteria phage T3]
 gi|17384295|emb|CAC86283.1| DNA polymerase [Enterobacteria phage T3]
          Length = 704

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/475 (10%), Positives = 107/475 (22%), Gaps = 130/475 (27%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQ---AIQVFNNR 280
             +V +    + ++  L     +  +   +        VL   +   P+   AI +    
Sbjct: 330 EHVVFNPSSRDHIQKKLQEAGWVPTKFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEY 389

Query: 281 MRASR---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSH 336
           +   +    +       +  +  DG++ G++   GA  TGR +        +P   S   
Sbjct: 390 LMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIPGVRSPYG 448

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           E+                 P                       D +G+E R LA      
Sbjct: 449 EQCRAAFGAEHHLDGITGKP-----------------WVQAGIDASGLELRCLAHF---- 487

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +  F+ GE  +                   R   K       Y  G +          
Sbjct: 488 --MARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDEKI-------- 537

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                                          + +KK + +    
Sbjct: 538 ------------------------------------GQIVGAGKERGKELKKKFLENTPA 561

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           ++ L   + Q   ++ +        K +               +    GR +  R     
Sbjct: 562 IAALRESIQQTLVESSQWVAGEQQVKWKRR------------WIKGLDGRKVHVRSPHA- 608

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDI-------- 624
                                   ++Q+    I    ++       + G           
Sbjct: 609 --------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAY 648

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYR 674
           +  +HDEI       +   A  +  +      W          L  EG     ++
Sbjct: 649 MAWIHDEIQVACRTEEI--AKTVIEVAQEAMRWVGEHWNFRCLLDTEGKMGANWK 701


>gi|158345045|ref|YP_001522810.1| putative DNA polymerase A [Pseudomonas phage LKD16]
 gi|114796398|emb|CAK25954.1| putative DNA polymerase A [Pseudomonas phage LKD16]
          Length = 808

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/430 (9%), Positives = 93/430 (21%), Gaps = 87/430 (20%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAMNSDG 302
           +T    L + +K   +A ++        +                      +++ ++ DG
Sbjct: 400 STSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGSIKDTKGMLQYVDEDG 459

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            +  +L    A+ T R S      Q LP       E                        
Sbjct: 460 IIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDPEA---------------------GS 497

Query: 363 CVRSCVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
            V+   ++       L   D   +E  +LA ++ ++  L+    G D++           
Sbjct: 498 RVKEMFVSRFGPDGMLGETDYTALEVVMLAALSKDRNLLEKLMAGTDMH----------- 546

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                     +                F        +  +             +    + 
Sbjct: 547 -------LYRLAGKHN-------NWNGF-DYDQLVAIKKDPNHEWHGRVMQARKKIKPKA 591

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIA 540
           F      +    A          +                   +  + E       A   
Sbjct: 592 FSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSAE-------ATSL 644

Query: 541 RKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL---TREYTYGGK- 596
              +    +                    Y        Y      +     R+     K 
Sbjct: 645 VMYKAEDQMPAGAFSEMGSDGNWRQYRRGYWQAPGGTCYSFRQQERWDKEQRKTVMDFKD 704

Query: 597 --LTENIVQAVSRDILAEGMMNA-----TKAGY----DIVLTVHDEIVCETPDTDEFNAS 645
             +     Q  +  ++   +         + G+     ++  VHD +  +         +
Sbjct: 705 TQIANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLINNVHDAVYTDCHKDTAAEVN 764

Query: 646 M-LYHLMTSN 654
             +  +M   
Sbjct: 765 KGVRDIMADA 774



 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 68/278 (24%), Gaps = 52/278 (18%)

Query: 1   MATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK- 58
           M T+  +D ET S  +        +     +++ A+  D       D      +    + 
Sbjct: 1   MTTIRILDLETES-YEHKGRKASPFDHRNYIVMAAWRDD------VDGKVGQKVEHRFRN 53

Query: 59  -EALENTDVTI---------VAHNSYFERTVL-----KACFNLDIPIHRWICTLVLARSN 103
               E+ +            VAHN+ FE                    R  CT       
Sbjct: 54  RAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEYLL 113

Query: 104 G----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                L  AL  +      + +             K    + +        ++    +  
Sbjct: 114 SHQTWLYPALDELAPKYGGTHKVD---------GIKLLWDQGVLTSQ--MDQDLLSEYLS 162

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCVDVALAH----T 206
              GD+  T  +F                 +              G  VD+ +A      
Sbjct: 163 GPCGDIENTALVFYGQLMKLQARGMWAGYLERCEALLGFSAMECAGLKVDLEVAKVNHAK 222

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
             + V     +L + +             L  +  WL+
Sbjct: 223 QLEEVAEIEAELQKLMPEFPPYFEFKYTSLYHMSAWLY 260


>gi|47934650|gb|AAT39763.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 76/225 (33%), Gaps = 54/225 (24%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+  D  +A  +++      T ++ +L+ +   ++                   +  
Sbjct: 1   ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 235 CLEKLKTWLFLE---TGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L  +                ++ L  N  + P+A  V    +  S+  +  +
Sbjct: 61  SRQQVADRLTAKDAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            + ++A+  DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                        RSC   ++G KLV  D +G+E R+LA    + 
Sbjct: 161 -------------RSCFTVADGNKLVGIDASGLELRMLAHYMDDP 192


>gi|88854986|ref|ZP_01129651.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88815514|gb|EAR25371.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 558

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 68/455 (14%), Positives = 114/455 (25%), Gaps = 118/455 (25%)

Query: 198 CVDVALAH---TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            +   L     T+      +   L  E+  L      +      L   L +  G+     
Sbjct: 187 RILTDLLGPRPTMESARPSKVQDLVDEIRELLDAPQLNPESPSDLLRALNVA-GIQ---- 241

Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
           T +T    L   +   P    + +   + +R         +++   DGR R      G  
Sbjct: 242 TNSTRAWELKQLR--HPVISPLLHY-KKLARLLTANGWNWLDSWVHDGRFRPDY-VPGGV 297

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGRW+        LP                                 +R  VI   G 
Sbjct: 298 VTGRWATSGGGALQLP-------------------------------HLIRGAVIPDPGW 326

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           KLVVAD + +E R+LA M+ ++  ++A          +    +    A    + RA  K+
Sbjct: 327 KLVVADASQLEPRILAAMSADRGMVEAG---------SSGDLYEGIVASGAVETRAHAKL 377

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
             L   Y                                 +  A               I
Sbjct: 378 AMLGAMYGATTG----------------ESGRLMPKLARAYPRAIQLVEDAARAGERGEI 421

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
               +G +  R +                L  A    +       +  R     +     
Sbjct: 422 VSTQLGRSSPRGEDT--------GTYDESLTPAERAALRERG--RSWGRFTRNFIVQGTA 471

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
               +  + S RS     +G                   G  LTE+              
Sbjct: 472 AEWALCWMASIRSR-LVSLGE------------------GKWLTESP------------- 499

Query: 615 MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                    +V  +HDE+V   P+      + L  
Sbjct: 500 --------HLVFFLHDEVVVHAPEELAETVAALID 526


>gi|47934670|gb|AAT39773.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 54/225 (24%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV------------------SSSR 234
              G+  D  +A  +++      T ++ +L+ +   ++                   +  
Sbjct: 1   ERNGFAFDFPVACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L  +  +             ++ L  N  + P+A  V    +  S+  +  +
Sbjct: 61  SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANI-PEAALVLEY-LTLSK-RIGMV 117

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
            + ++A+  DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 118 RSWLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY---------------- 160

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
                        RSC   ++G KLV  D +G+E R+LA    + 
Sbjct: 161 -------------RSCFTVADGNKLVGIDASGLELRMLAHYMDDP 192


>gi|47934642|gb|AAT39759.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 60/227 (26%), Gaps = 49/227 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV     L   +      ++ E++++                      + +  
Sbjct: 1   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSEKTGKQLKDKVTIFNLA 60

Query: 235 CLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +          +  L           Q+    +   +  V  +
Sbjct: 61  SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ---AQLIAEYLMLQK-RVGMI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           +  ++ ++              + TGR +        +P  ++                 
Sbjct: 117 DAWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKP---------------- 160

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                     + +RS     +G  L   DL+GIE R LA    +   
Sbjct: 161 --------YGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDEW 199


>gi|47934622|gb|AAT39749.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 210

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 60/227 (26%), Gaps = 49/227 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV     L   +      ++ E++++                      + +  
Sbjct: 1   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 60

Query: 235 CLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +          +  L           Q+    +   +  V  +
Sbjct: 61  SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ---AQLIAEYLMLQK-RVGMI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           +  ++ ++              + TGR +        +P  ++                 
Sbjct: 117 DAWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKP---------------- 160

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                     + +RS     +G  L   DL+GIE R LA    +   
Sbjct: 161 --------YGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDEW 199


>gi|47934616|gb|AAT39746.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 211

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 60/227 (26%), Gaps = 49/227 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV     L   +      ++ E++++                      + +  
Sbjct: 2   EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 61

Query: 235 CLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +          +  L           Q+    +   +  V  +
Sbjct: 62  SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ---AQLIAEYLMLQK-RVGMI 117

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           +  ++ ++              + TGR +        +P  ++                 
Sbjct: 118 DAWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVPSVTKP---------------- 161

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                     + +RS     +G  L   DL+GIE R LA    +   
Sbjct: 162 --------YGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDEW 200


>gi|307106799|gb|EFN55044.1| hypothetical protein CHLNCDRAFT_134899 [Chlorella variabilis]
          Length = 1781

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 44/301 (14%)

Query: 179  SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              +E  L  +   +   G  +D     +L   ++  R  ++ E+       +      ++
Sbjct: 1486 LEQEMPLAVVLAGMEAVGVGIDTQHLQSLRSQLEQRRKDIELEIARALGRRLD-LSKFKE 1544

Query: 239  LKTWLFLETG-----------LHLEDLTETTCQRVLSSN----KKLTPQAIQVFNNRMRA 283
            +   LF +               L+    +  + V+ +         P    +  +R  A
Sbjct: 1545 VSDVLFGKLEGQLGLQPPPCAKKLKRGGYSANKEVMQALVRLNPDCPPVVKLIAEHRRLA 1604

Query: 284  SRSAVLKLNTLVEAMNSD--------------------GRLRGTLQFLGASRTGRWSGCV 323
               +V  +  L++   +                     G  R        +        +
Sbjct: 1605 Y--SVWFIRQLLQCARAGAALAQQLEPAAGAAPLGRAGGGPRIWTVLHQTNSDTGAGAVL 1662

Query: 324  FPP---QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
                    +PR       +    T       S     +++   VR   +A+ G  L+ AD
Sbjct: 1663 LGLLRRCCVPRTHE--LRMLLKGTAREGDDVSASGQHRLLEANVRKAFVAAPGCVLLGAD 1720

Query: 381  LAGIEARVLAWMAGEQWKLKAFET-GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
               IE R++A  + ++  L  F+    D +    A+       QV++  R + K ++  +
Sbjct: 1721 YRAIELRMMAHFSQDEKLLATFQDGQHDPFRLLAAKWLGKELGQVSQTDRQLIKHLQYGI 1780

Query: 440  G 440
             
Sbjct: 1781 M 1781


>gi|322829429|gb|EFZ32820.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
           cruzi]
          Length = 1036

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 88/290 (30%), Gaps = 62/290 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVIL--------------------FAFGFDDHP 41
             L +D ET + +   K     + ++  V+L                     A  +DD  
Sbjct: 517 RYLVLDLETTT-VRRYKRVANPFTKENYVVLSGARDYTGKVFMAGRYFSRNIALRYDDFE 575

Query: 42  VE-LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE-RTVLKACFNLDI--PIHRWICTL 97
           V    D V       +    L++ DV  V HN  F+   + +            +   T+
Sbjct: 576 VTSTCDLVDGSSQHSLFLPPLDDYDVI-VGHNIKFDLLHIWRDAELRRFLSRGGKVWDTM 634

Query: 98  VLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                        G  + L+ + ++    + K++  KE              + + K  +
Sbjct: 635 YAEYLLTGHEVKLGRGAGLEDIAKSYGGQTPKLDAVKE-------------AWAKGKETY 681

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL---------SSKEQELWYLDQTINDRGYCVDV 201
              + L  EY  GD+  T  IF++              +   +       +   G   +V
Sbjct: 682 EIPYALLSEYLHGDLENTELIFRKHMERALLQRQAIICTARMDGLLCTTEMEYNGLKTNV 741

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLV-------SSSRCLEKLKTWLF 244
            LA T +  +  +  +L   L+      +        +    + L  + F
Sbjct: 742 QLAVTQSNELMGKVVELRNHLDDAIPKEIPPDCRKYFNWSSNQHLIAFFF 791


>gi|23009303|ref|ZP_00050402.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 209

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 46/166 (27%), Gaps = 35/166 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++         P  LK  L +
Sbjct: 25  IAIDTET--------LGLNPHRD--RLCVVQISRGDGSADVVQIRPGDPEPVRLKAILAD 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             V  + H + F+  VL       +      CT V ++          LK V   L  + 
Sbjct: 75  PGVLKIFHFARFDLAVLFRALG--VMPAPVYCTKVASKLARTYTDRHGLKDVVRELVGVD 132

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
             K ++  +                      +        Y   DV
Sbjct: 133 LSKQQQSSDW-------------GAETLSQAQID------YAASDV 159


>gi|47934658|gb|AAT39767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 73/223 (32%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D+  AH+L   +  E   ++ EL+ +                      V +  
Sbjct: 1   ERNGFKLDIPFAHSLMMDLMFEMNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+    +TE     V     +   +       R    +  V ++++ 
Sbjct: 61  SRKQIAERLKG-LGVTFNKMTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           + A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LGAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     R C    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRQCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197


>gi|321399177|emb|CAM66559.2| putative mitochondrial DNA polymerase I protein D [Leishmania
            infantum JPCM5]
          Length = 1579

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/412 (11%), Positives = 97/412 (23%), Gaps = 88/412 (21%)

Query: 260  QRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNT------LVEAMNSDGRLRGTLQFLG 312
            +  LS  K         V        +       +      +V  ++S            
Sbjct: 1194 EDTLSYFKSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHN 1253

Query: 313  ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
             + TGR +      QN+P+  +S                            +R   I+  
Sbjct: 1254 KTNTGRLASANPNCQNIPKEDKS---------------------------SLRDMFISRF 1286

Query: 373  GKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            G K   + AD + +E   LA +A ++  L+      D +           P     D   
Sbjct: 1287 GDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQ 1343

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              K +                                      +     +F R       
Sbjct: 1344 RAKKI-----------------------------KEPEFVKLRQQAKIFSFQRQYGAGVR 1374

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
              +            + +   + +  V      +  +      +  A +    R+V    
Sbjct: 1375 MLSQSTGLTQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQ 1430

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
              K    +     +G   V+ +       L                L    VQ  + +I+
Sbjct: 1431 FFKGMFPV----LTGSRYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV 1486

Query: 611  AEGMMNA----------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651
             + M+                  +  TVHD +  +   +     +     +M
Sbjct: 1487 -QVMLGVLWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1537



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 92/306 (30%), Gaps = 68/306 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----LWD----------- 46
             L +D ET + I   K     + ++  V+L         V      +D           
Sbjct: 466 RYLIVDLETTT-IRRYKRVANPFTKENYVVLSGARDYKGNVFMPRRYFDRSVAMRYDDPS 524

Query: 47  CVHDPVMPQV------LKEALENTDVTIVAHNSYFER-TVLKACFNLDI--PIHRWICTL 97
                 + +           L+  DV  V HN  F+   + +            +   T+
Sbjct: 525 VTSQNHLVEKSSKDSLFLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWDTM 583

Query: 98  VLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                        G  + L+ V ++    + K++  K               +   K  +
Sbjct: 584 YGEYLLTGHEVKLGHGAGLEDVAKSYGGQTMKLDAVKR-------------AWAEGKETY 630

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------TINDRGYCVDV 201
              + +  EY  GD+  T  IF +    + +++++               +   G   +V
Sbjct: 631 EIPYSILTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGLKTNV 690

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLV-------SSSRCLEKLKTWLFLETGLHLEDL 254
            LA   +  +  + ++L ++LE      +        +    + L T+ F         L
Sbjct: 691 DLAQRQSNELMTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFF------GGKL 744

Query: 255 TETTCQ 260
           T +T  
Sbjct: 745 TLSTNA 750


>gi|29831179|ref|NP_825813.1| DNA polymerase I [Streptomyces avermitilis MA-4680]
 gi|29608293|dbj|BAC72348.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680]
          Length = 564

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/426 (13%), Positives = 103/426 (24%), Gaps = 145/426 (34%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F + G+ +        + V        P    +     +  R  V    + ++    DGR
Sbjct: 233 FAQAGIKVRSTRRWEIESV------DHPAVKPLLEY-KKLYRIWVAHGWSWLQDWVRDGR 285

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G + TGRW         +P+                                
Sbjct: 286 FRPEY-LPGGTVTGRWVTNGGGALQIPK-------------------------------V 313

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G +LVVAD   +E RVLA ++ +   ++      DLY +           +
Sbjct: 314 IRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVS--------DR 365

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                RA  K+  L   Y            T+G  L   A L                  
Sbjct: 366 AFSGDRAQAKLAVLGAIY----------GQTSGDGLKNLAAL------------------ 397

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                      R++  +       +  A     E         R
Sbjct: 398 ---------------------------RRRFPKAVAY---VDDAARAGEEGRLVRTWLGR 427

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
              P     +D      +            G  + ++       +R    G      +VQ
Sbjct: 428 TSPPAAGASEDSAEEAGIPQDE---PAPSSGAAQEWMPGYASTNSRAR--GRFARNFVVQ 482

Query: 604 AV-------------------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN- 643
                                + +               +V   HDE++   P  +    
Sbjct: 483 GSAADWALLLLAALRRACAGLAAE---------------LVFFQHDEVIVHCPAEEADTV 527

Query: 644 ASMLYH 649
            + +  
Sbjct: 528 VAAIRE 533


>gi|302553133|ref|ZP_07305475.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
 gi|302470751|gb|EFL33844.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736]
          Length = 560

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/413 (13%), Positives = 107/413 (25%), Gaps = 131/413 (31%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F + G+ +    +   + V        P    +     +  R  V    + ++    +GR
Sbjct: 230 FAQAGIKVSSTRKWEIESV------DHPAVKPLLEY-KKLYRIWVAHGWSWLQDWVREGR 282

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G + TGRW         +P+                                
Sbjct: 283 FRPEF-LAGGTVTGRWVTNGGGGLQIPK-------------------------------V 310

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G +LVVAD   +E RVLA ++ +   ++      DLY +           +
Sbjct: 311 IRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVS--------DR 362

Query: 424 VTKDQRAIGKVMELALGYQGGAK-AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                RA  K+  L   Y   +    + +A+                     +  A  + 
Sbjct: 363 AFSGDRAQAKLAVLGAVYGQTSGDGLKNLAAL-----------------RRRFPRAVAYV 405

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                   E  +   ++G  C    +A                +A E+          ++
Sbjct: 406 DEAARAGEEGRLVRTWLGRTCPPAARA--------------TDEAAEEAGIPLSEDDTQR 451

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                                           + + ++        R    G      +V
Sbjct: 452 --------------------------------DAQQWVPGYASTNARAR--GRFARNFVV 477

Query: 603 QAV-----------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
           Q              R           +   ++V   HDE++   P+ +    
Sbjct: 478 QGSAADWALLLLAALR-------KTCAELSAELVFFQHDEVIVHCPEEETAAV 523


>gi|159475854|ref|XP_001696029.1| hypothetical protein CHLREDRAFT_175586 [Chlamydomonas reinhardtii]
 gi|158275200|gb|EDP00978.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 259

 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 64/261 (24%), Gaps = 52/261 (19%)

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEARVLAWMAG 394
            +++ I   L   I      L+     VR    A    G  LVVAD   +E R+LA M  
Sbjct: 5   RQVNAIDKLLSAFIIPLQPALEKDRYKVRQAFTADVAAGHTLVVADYGQLELRLLAHMTD 64

Query: 395 EQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
            +  L+AF  G D +  T    ++     +  +                     + +   
Sbjct: 65  CKSMLEAFVLGGDFHSRTAVGMYDHIKDAIRDN---------------------KVLLEW 103

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
            G   +    +    ++        NF     +     A +        +     W    
Sbjct: 104 DGEGESPLPLVKDLYASERRKAKVLNFSIAYGKTAHGLAADFKTSKEEAQATVDKWYADR 163

Query: 515 SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
             V +   +  +   Q  +                          +    GR+     + 
Sbjct: 164 FEVRQWQEKTKEGARQEGK--------------------------VRTLLGRTRPLPGIN 197

Query: 575 NNRSYLNTTTRQLTREYTYGG 595
                    +    R      
Sbjct: 198 APDFKSKGHS---ERAAINTP 215


>gi|17570813|ref|NP_523322.1| gene 5B protein [Enterobacteria phage T3]
 gi|579192|emb|CAA35141.1| 5B [Enterobacteria phage T3]
 gi|17384297|emb|CAC86285.1| gene 5B protein [Enterobacteria phage T3]
          Length = 372

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/471 (10%), Positives = 105/471 (22%), Gaps = 130/471 (27%)

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETT---CQRVLSSNKKLTPQ---AIQVFNNRMRAS 284
            +    + ++  L     +  +   +        VL   +   P+   AI +    +   
Sbjct: 2   FNPSSRDHIQKKLQEAGWVPTKFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQ 61

Query: 285 R---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELD 340
           +    +       +  +  DG++ G++   GA  TGR +        +P   S   E+  
Sbjct: 62  KRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIPGVRSPYGEQCR 120

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                          P                       D +G+E R LA        + 
Sbjct: 121 AAFGAEHHLDGITGKP-----------------WVQAGIDASGLELRCLAHF------MA 157

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
            F+ GE  +                   R   K       Y  G +              
Sbjct: 158 RFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDEKI------------ 205

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                      + +KK + +    ++ L
Sbjct: 206 --------------------------------GQIVGAGKERGKELKKKFLENTPAIAAL 233

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + Q   ++ +        K +               +    GR +  R         
Sbjct: 234 RESIQQTLVESSQWVAGEQQVKWKRR------------WIKGLDGRKVHVRSPHA----- 276

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN----ATKAGYDI--------VLTV 628
                               ++Q+    I    ++       + G           +  +
Sbjct: 277 ----------------ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWI 320

Query: 629 HDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRYR 674
           HDEI       +   A  +  +      W          L  EG     ++
Sbjct: 321 HDEIQVACRTEEI--AKTVIEVAQEAMRWVGEHWNFRCLLDTEGKMGANWK 369


>gi|308071862|emb|CBW54783.1| putative DNA polymerase A [Pantoea phage LIMElight]
          Length = 778

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/447 (12%), Positives = 116/447 (25%), Gaps = 97/447 (21%)

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRASRS-AVLKLNTLVEAM----NSDGRLRGTLQFLG 312
           T  ++++    L          R   ++  +V KL+ +++ +    +    +        
Sbjct: 396 TSAKLVNELASLEKDTGTY-YLRTEYNKDGSVKKLSGMLQYVIPMDDDGSGIIHHRLNTC 454

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
           A+ T R S      QNLPR                             +  V+    +  
Sbjct: 455 ATITTRLSSGNPNLQNLPRDG---------------------------TSKVKQMFTSRF 487

Query: 373 GK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
           G   +++  D + +E  +     G+   L   +TG D++    A   N+    V K    
Sbjct: 488 GSAGRIIEVDYSALEVVMGCVHTGDLKLLHLLQTGTDMHCYRLAFRHNMPYEDVLK---- 543

Query: 431 IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
           +    E    Y+                                     +F         
Sbjct: 544 LAVEDEDGPDYKMW-------------------------KQRRTDIKPPSFAAQYGATAK 578

Query: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
             A         C+       +      +  + + +  E+T         + +R+     
Sbjct: 579 GIAFATGLSLEFCQEFLDNEAKLFPDSIKFRDVIRKEVERTGNLPG----QLKREQNDDG 634

Query: 551 MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
                       PSG+   +R     R    T   + T              Q  +  ++
Sbjct: 635 SFSVYKVGYWTSPSGQRYSFRQKKQWRDGRQTMDYKATEMA-------NYWCQGEAFFMM 687

Query: 611 AEG--MM-------NATKAGYDIVLTVHDEIVCETPDTDEFNASML--YHLMTSNPS--- 656
           A    M+       +       ++  VHD    +  D      + L    +M +      
Sbjct: 688 AVAFGMLIRHLIANDFYDGKVALMTNVHDAAYLDAADEVVGRQAALDTKRIMETARERIL 747

Query: 657 --W-----AKGLPLKAEGYESKR-YRK 675
             W      K +P  A     +  Y K
Sbjct: 748 QFWPDYGILKDVPFPAAAEMGESMYSK 774



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 62/266 (23%), Gaps = 35/266 (13%)

Query: 6   IDFETRSPIDLTKCG--ICKYAEDVCVILFAF---------GFDDHPVELWDCVHDPVMP 54
           ID ET    +    G     Y     V+  A+           D  PV+           
Sbjct: 3   IDLET---ENYEYYGSKASPYCPQNYVVESAWRYDRALSDGSTDVGPVQYVRYSSREEFI 59

Query: 55  Q---VLKEALENTDVTIVAHNSYFERTVLKACFNLDI-----PIHRWICTLVLARSN--- 103
                      +    IVAHN+ +E +        +         R  CT+         
Sbjct: 60  AAGSQWCPI-PDDCWLIVAHNAAYEISWFLQFDRANFEAFLKRGGRVWCTMHGEYLVTDQ 118

Query: 104 -GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
               ++L         + +               E    L      N          Y +
Sbjct: 119 QSQYASLDETAPKYGGTHKVDGVKVLWEQGVRTSEIDPMLLHDYLVNGDIPNTALVFYGQ 178

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                 R       PL  +  +           G  VD+  A    +  +    +L  EL
Sbjct: 179 YQKFTERG----QFPLIWERMDALLAFAYCEWFGLWVDMPTAKKNQKEQEARIAELKAEL 234

Query: 223 E----SLTYGLVSSSRCLEKLKTWLF 244
           E     L      +      +   ++
Sbjct: 235 EQLLPELPETFEFNWGSNFMMSALIY 260


>gi|86747785|ref|YP_484281.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
 gi|86570813|gb|ABD05370.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2]
          Length = 204

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 33/184 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            LK+ L +
Sbjct: 20  VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGHSDAPNLKKLLGD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
            ++  + H + F+   L       +      CT + +R          LK +   L    
Sbjct: 70  PNILKIFHFARFDLAALSNALG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +           + + A      Y   DV     +  +L+ + +
Sbjct: 124 --------LNVDLSKQQQSSDWGADTLSDAQLA------YAASDVLHLHALRDKLDAMLA 169

Query: 181 KEQE 184
           +E  
Sbjct: 170 RENR 173


>gi|256395061|ref|YP_003116625.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928]
 gi|256361287|gb|ACU74784.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928]
          Length = 568

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/449 (13%), Positives = 94/449 (20%), Gaps = 138/449 (30%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
            E   +   L         +     ++    F + G+ L  L     + +        P 
Sbjct: 217 REMVAMAARLAEALGIRALNPDSAAQVTK-AFSDAGVKLPSLRRWELEGI------DHPA 269

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +       SR          +    DGR R      G   TGRW+        + R 
Sbjct: 270 IPLLLKY-KELSRLYSFNGWVWRDTWVVDGRFRPEYSV-GGVVTGRWAARGGGALQIARR 327

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R  VIA  G   V AD A +E R+LA M
Sbjct: 328 -------------------------------LRKAVIADPGWLFVSADAAQLEPRILAAM 356

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           A +    +A ++               A A V +  R   K+  L   Y           
Sbjct: 357 AQDPGMAEATQS----------DDMYSALAGVFEGSRDQAKLGLLGAMYGQTGGGAAAPL 406

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           +                     +  A               +    +G  C    + W  
Sbjct: 407 ALM----------------RRRFPKATALLDDAAREGERGRLVRSQLGRTCPPPSQRW-- 448

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                                                              S R      
Sbjct: 449 ------------------------------------QSAIAGDAEADAADDSNRR----- 467

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----------GY 622
                       R   R           ++QA + +           A          G 
Sbjct: 468 -------SGQVARARGR------FTRNFVIQATAAEW-----AEVLLALLRQQLRTLDGP 509

Query: 623 DIVLTVHDEIVCETPDTDEFNA-SMLYHL 650
            +V   HDE++   P         M+   
Sbjct: 510 QLVFFQHDEVLVHAPREHAAAVTEMIIQC 538


>gi|157803820|ref|YP_001492369.1| ribonuclease D [Rickettsia canadensis str. McKiel]
 gi|157785083|gb|ABV73584.1| ribonuclease D [Rickettsia canadensis str. McKiel]
          Length = 203

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 56/204 (27%), Gaps = 33/204 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET         G+  + +   + L  F   +    L    +       LK  L +
Sbjct: 20  LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFENQNYTAPNLKALLSD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H + F+   +K     +I +    CT + ++          LK +   L    
Sbjct: 70  KSRCKIFHFARFDLAAIKKYL--EIELENIFCTKISSKLVRTYTDSHGLKDLCREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +        N            EY   DV    ++   L+ +  
Sbjct: 124 --------LNINISKQQQSSYWRADNLS------SEQKEYAAKDVLYLHQLKDILQKMLL 169

Query: 181 KEQELWYLDQTINDRGYCVDVALA 204
           KE                 ++ L 
Sbjct: 170 KENRFELAQDIFRFVPTRANLDLL 193


>gi|146081058|ref|XP_001464182.1| mitochondrial DNA polymerase I protein D [Leishmania infantum JPCM5]
          Length = 1073

 Score = 79.8 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/412 (11%), Positives = 97/412 (23%), Gaps = 88/412 (21%)

Query: 260  QRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNT------LVEAMNSDGRLRGTLQFLG 312
            +  LS  K         V        +       +      +V  ++S            
Sbjct: 688  EDTLSYFKSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHN 747

Query: 313  ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
             + TGR +      QN+P+  +S                            +R   I+  
Sbjct: 748  KTNTGRLASANPNCQNIPKEDKS---------------------------SLRDMFISRF 780

Query: 373  GKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            G K   + AD + +E   LA +A ++  L+      D +           P     D   
Sbjct: 781  GDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQ 837

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              K +                                      +     +F R       
Sbjct: 838  RAKKI-----------------------------KEPEFVKLRQQAKIFSFQRQYGAGVR 868

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
              +            + +   + +  V      +  +      +  A +    R+V    
Sbjct: 869  MLSQSTGLTQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQ 924

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
              K    +     +G   V+ +       L                L    VQ  + +I+
Sbjct: 925  FFKGMFPV----LTGSRYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV 980

Query: 611  AEGMMNA----------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651
             + M+                  +  TVHD +  +   +     +     +M
Sbjct: 981  -QVMLGVLWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1031



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 71/224 (31%), Gaps = 45/224 (20%)

Query: 63  NTDVTIVAHNSYFER-TVLKACFNLDI--PIHRWICTLVLARS-------NGLPSALKAV 112
           +    IV HN  F+   + +            +   T+             G  + L+ V
Sbjct: 40  DEYDVIVGHNIKFDMLHIWRDVEFRKFLRRGGKIWDTMYGEYLLTGHEVKLGHGAGLEDV 99

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            ++    + K++  K               +   K  +   + +  EY  GD+  T  IF
Sbjct: 100 AKSYGGQTMKLDAVKR-------------AWAEGKETYEIPYSILTEYLHGDLENTELIF 146

Query: 173 KRLEPLSSKEQELWYLDQ---------TINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            +    + +++++               +   G   +V LA   +  +  + ++L ++LE
Sbjct: 147 CKHMERALEQRQVIICCARMEGLLCTTEMEYNGLKTNVDLAQRQSNELMTKVSELRRQLE 206

Query: 224 SLTYGLV-------SSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
                 +        +    + L T+ F         LT +T  
Sbjct: 207 ESIPHEIPHDCRKFFNWSSNQHLITFFF------GGKLTLSTNA 244


>gi|116671916|ref|YP_832849.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
 gi|116612025|gb|ABK04749.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24]
          Length = 568

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/479 (13%), Positives = 110/479 (22%), Gaps = 127/479 (26%)

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
             +  E+     P   +  E    D            A    L             EL  
Sbjct: 179 AMIAAELQHTGVPWREELHEEILADYLGPRPPLGHRPARLEAL-----------TTELRR 227

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           L      +    ++L   L    G+ ++   +   +          P    +     + +
Sbjct: 228 LLNSPGLNPDSPQELMRALH-RNGIEVKTTRQWELKE------SSHPAIEPLLAY-KKLA 279

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           R         ++A  ++GR +     +G   +GRW+        +PR             
Sbjct: 280 RLHAANGWAWLDAWVNNGRFQPEY-VVGGVVSGRWASRGGGALQIPR------------- 325

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                              +R  V A  G KL+VAD + +E RVL  +A +    +A   
Sbjct: 326 ------------------QIRGAVHADPGHKLIVADASQLEPRVLVALAQDSKMAEAARD 367

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAH 464
                       +    AQ     RA  KV  L   Y                       
Sbjct: 368 ---------KDLYAGIAAQGFGGDRAKAKVALLGAIYGATTG----------------ES 402

Query: 465 LVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                     +  A  F                 +G +       W         L ++ 
Sbjct: 403 GRLMPQLTRTYPRAVGFVEQAAREGEAGGTVTSRLGRSSPPPSDRW---------LQSQK 453

Query: 525 HQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTT 584
               E+         +R R     V      +     L   R      +   RS    T 
Sbjct: 454 STTAEEQRRADAIARSRGRFTRNFVVQGSAADWAACWLAELRRR----LRAMRSAGGPTG 509

Query: 585 RQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
                                                  +V  +HDE++   PD     
Sbjct: 510 E--------------------------------------LVFFLHDEVMVHCPDGSVDA 530


>gi|322489593|emb|CBZ24851.1| mitochondrial DNA polymerase I protein D,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1579

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/412 (11%), Positives = 96/412 (23%), Gaps = 88/412 (21%)

Query: 260  QRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNT------LVEAMNSDGRLRGTLQFLG 312
            +  LS  K         V        +       +      +V  ++S            
Sbjct: 1194 EDTLSYFKSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSMDSCIHHELIHN 1253

Query: 313  ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
             + TGR +      QN+P+  +S                            +R   I+  
Sbjct: 1254 KTNTGRLASANPNCQNIPKEDKS---------------------------SLRDMFISRF 1286

Query: 373  GKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            G K   + AD + +E   LA +A ++  L+      D +           P     D   
Sbjct: 1287 GDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQ 1343

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              K                                        +     +F R       
Sbjct: 1344 RAKKN-----------------------------KEPEFVKLRQQAKIFSFQRQYGAGVR 1374

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
              +            + +   + +  V      +  +      +  A +    R+V    
Sbjct: 1375 MLSQSTGLTQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQ 1430

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
              K    +     +G   V+ +       L                L    VQ  + +I+
Sbjct: 1431 FFKGMFPV----LTGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIV 1486

Query: 611  AEGMMNA----------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651
             + M+                  +  TVHD +  +   +     +     +M
Sbjct: 1487 -QVMLGVLWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1537



 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 86/306 (28%), Gaps = 68/306 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----LWD----------- 46
             L +D ET + I   K     + ++  V+L         V      +D           
Sbjct: 466 RYLILDLETTT-IRRYKRVANPFTKENYVVLSGARDYKGNVFMPRRYFDRSVAMRYDDPS 524

Query: 47  CVHDPVMPQV------LKEALENTDVTIVAHNSYFER-TVLKACFNLDI--PIHRWICTL 97
                 + +           L+  DV  V HN  F+   + +            +   T+
Sbjct: 525 VTSQNHLVEKSSKDSLFLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWDTM 583

Query: 98  VLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                        G  + L+ V ++    + K++  K               +   K  +
Sbjct: 584 YGEYLLTGQEVKLGHGAGLEDVAKSYGGQTMKLDAVKR-------------AWAEGKETY 630

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL-SSKEQ--------ELWYLDQTINDRGYCVDV 201
              +    EY  GD+  T  IF +       + Q        E       +   G   +V
Sbjct: 631 EIPYSTLTEYLHGDLENTELIFCKHMERALEQRQVIIGCARMEGLLCTTEMEYNGLKTNV 690

Query: 202 ALAHTLNQIVDVERTKLDQELES-------LTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            LA   +  +  + ++L + LE               +    + L T+ F         L
Sbjct: 691 DLAQRQSNELMTKVSELRRHLEESIPQEIPHDCRKFFNWSSNQHLITFFF------GGKL 744

Query: 255 TETTCQ 260
           T +T  
Sbjct: 745 TLSTNA 750


>gi|322497562|emb|CBZ32636.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1579

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/412 (11%), Positives = 98/412 (23%), Gaps = 88/412 (21%)

Query: 260  QRVLSSNKKLTPQ-AIQVFNNRMRASRSAVLKLNT------LVEAMNSDGRLRGTLQFLG 312
            +  LS  K         V        +       +      +V  ++S            
Sbjct: 1194 EDTLSYFKSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHN 1253

Query: 313  ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
             + TGR +      QN+P+  +S                            +R   I+  
Sbjct: 1254 KTNTGRLASANPNCQNIPKEDKS---------------------------SLRDMFISRF 1286

Query: 373  GKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA 430
            G K   + AD + +E   LA +A ++  L+      D +                  +  
Sbjct: 1287 GDKGMCIEADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRSK 1346

Query: 431  IGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHP 490
              K  E            ++ A                           +F R       
Sbjct: 1347 KIKEPEF--------VKLRQQA------------------------KIFSFQRQYGAGVR 1374

Query: 491  EHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVY 550
              +            + +   + +  V      +  +      +  A +    R+V    
Sbjct: 1375 MLSQSTGLTQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQ 1430

Query: 551  MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDIL 610
              K    +     +G   V+ +       L                L    VQ  + +I+
Sbjct: 1431 FFKGMFPV----LTGSRYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV 1486

Query: 611  AEGMMNA----------TKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LM 651
             + M+                  +  TVHD +  +   +     +     +M
Sbjct: 1487 -QVMLGVLWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1537



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 92/306 (30%), Gaps = 68/306 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----LWD----------- 46
             L +D ET + I   K     + ++  V+L         V      +D           
Sbjct: 466 RYLIVDLETTT-IRRYKRVANPFTKENYVVLSGARDYKGNVFMPRRYFDRSVAMRYDDPS 524

Query: 47  CVHDPVMPQV------LKEALENTDVTIVAHNSYFER-TVLKACFNLDI--PIHRWICTL 97
                 + +           L+  DV  V HN  F+   + +            +   T+
Sbjct: 525 VTSQNHLVEKSSKDSLFLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWDTM 583

Query: 98  VLARS-------NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                        G  + L+ V ++    + K++  K               +   K  +
Sbjct: 584 YGEYLLTGHEVKLGHGAGLEDVAKSYGGQTMKLDAVKR-------------AWAEGKETY 630

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ---------TINDRGYCVDV 201
              + +  EY  GD+  T  IF +    + +++++               +   G   +V
Sbjct: 631 EIPYSILTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGLKTNV 690

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLV-------SSSRCLEKLKTWLFLETGLHLEDL 254
            LA   +  +  + ++L ++LE      +        +    + L T+ F         L
Sbjct: 691 DLAQRQSNELMTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFF------GGKL 744

Query: 255 TETTCQ 260
           T +T  
Sbjct: 745 TLSTNA 750


>gi|84495963|ref|ZP_00994817.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
 gi|84382731|gb|EAP98612.1| putative DNA polymerase I [Janibacter sp. HTCC2649]
          Length = 565

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 92/335 (27%), Gaps = 63/335 (18%)

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK-GDVTVTREIFKRLEPLSSKEQEL 185
           +EL+                       W      C          +  R+      E   
Sbjct: 126 EELVRGDGHLRADAASGWLETDERLLRWAEAALECAVRQRDRAESLGARIVGTIHSESAA 185

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVD------------VERTKLDQELESLTYGLVSSS 233
             +   + + G  VD A+   L                   R +  + L  +     +  
Sbjct: 186 ALMCLELEEGGLPVDRAVMERLIGEFAGPRAASEEAAAVARRERDAEVLRHVPGRESTDL 245

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK-LN 292
           R   +++  L    G+ + +  +     VL + + + P    +     +A R A      
Sbjct: 246 RNPLQVRDML-AGVGVDVPNTRKW----VLDAYRHVHPVVDALL-AWRKAERIATTYGYR 299

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            L + +  D RLRG          GR +       NLP                      
Sbjct: 300 WLDQCVGPDDRLRGG-WTACDGAAGRMTAEN-GLHNLP---------------------- 335

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                      +RS V A  G   V ADL  IE RVLA ++G+    +A           
Sbjct: 336 ---------AALRSGVAAHPGHVFVRADLGQIEPRVLAVVSGDPAFAEATRA-------- 378

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
                    A      R + K+  LA  Y   + A
Sbjct: 379 --DDLYAPVASRLGVDRPVAKIAVLAAMYGQRSGA 411



 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 18/147 (12%)

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
             A+    R     V  +  +     ++P+GR L    VG N +               G
Sbjct: 424 PVAMGLLDRAYDTGVRGEPLRTFGGRLIPTGRFLAQSPVGTNPALD----------AARG 473

Query: 595 GKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                 I+Q  + ++               G  IVL +HDE++   P++     + L   
Sbjct: 474 RFARNAIIQGAAAELFKAWAATVRALGTPMGAQIVLCLHDELLVHAPESRAAEVAALVDQ 533

Query: 651 -MTSNP-SWAKGLPLK--AEGYESKRY 673
            +      WA G P++  A+     R+
Sbjct: 534 SLADASRRWAAGAPVRFVADTSIIARW 560


>gi|228907509|ref|ZP_04071366.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           thuringiensis IBL 200]
 gi|228852001|gb|EEM96798.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus
           thuringiensis IBL 200]
          Length = 464

 Score = 79.4 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/380 (12%), Positives = 99/380 (26%), Gaps = 70/380 (18%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV---HD----------PVMPQVL 57
            + ID    G   + +   +I    GF D+           H               + L
Sbjct: 86  YTFIDTKSTGFNPFKDS--IISITIGFMDNCFFYIPIKPFKHGLSQHISTLSLEYTMKKL 143

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEA 115
              LE  D  ++  NS      L    + DI  + +  T + A          +K   + 
Sbjct: 144 SPLLE-KDTLLILSNSKQHIHALYNWCDFDITYNIFWDTEIAANLLNENHPKGVKEWYKE 202

Query: 116 LKLSS--------QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
             L            ++  K +I +    +    +            +   EY K     
Sbjct: 203 YVLPRLISNETILNTIDRKKYMIEKTLYDQLQHHVATYFACYDIFMLKSVFEYQKRIFEN 262

Query: 168 T-REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT-LNQIVDVERTKLDQELESL 225
               +    +     E  L  +  T   +G  +        + QI+  +   + +E+ + 
Sbjct: 263 PKFNLGPIYKLFREIEMPLIAVLTTAERKGIKISEEFLSNDVKQILQTKFQSVKKEILNY 322

Query: 226 TYGLV-------------------------SSSRCLEKLKTWLFLETGLHLE-------- 252
               +                          +      L   L+++  +           
Sbjct: 323 LGSTITLNNCMHPPKQQNKYKGANKLTSTLFNINSPAHLAQKLYIDNAILKPIMEYDKSC 382

Query: 253 ----DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM--NSDGRLRG 306
                  + T ++ L  N    P    +   R    +      ++L +      D ++  
Sbjct: 383 KSVISKLK-TDRKTLIRNLSKHPVIPLILEYRR-LVKLISSFCDSLPKEQQGTIDNKIHP 440

Query: 307 TLQFLGASRTGRWSGCVFPP 326
               +G ++TGR S      
Sbjct: 441 IYNSVG-TKTGRMSCSSPNL 459


>gi|302559315|ref|ZP_07311657.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
 gi|302476933|gb|EFL40026.1| DNA polymerase I [Streptomyces griseoflavus Tu4000]
          Length = 563

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/437 (14%), Positives = 108/437 (24%), Gaps = 148/437 (33%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F + G+ +        + V        P    +     +  R  V    + ++    DGR
Sbjct: 233 FAQAGVKVASTRRWELESV------DHPAVAPLIEY-KKLYRIWVAHGWSWLQDWVRDGR 285

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G + TGRW         +P+                                
Sbjct: 286 FRPEF-LAGGTVTGRWVTNGGGALQIPK-------------------------------V 313

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R   +A  G +LVVAD   +E RVLA ++ +   ++      DLY +           +
Sbjct: 314 IRRAAVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVS--------DR 365

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                RA  K+  L   Y            T+G  L   A L                  
Sbjct: 366 AFSGDRAQAKLAVLGAVY----------GQTSGDGLKNLAAL------------------ 397

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                      R++  R     ++      +  E G+ +     
Sbjct: 398 ---------------------------RRRFPRAVAYVDD----AARAGEEGRLVRTWLG 426

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R  P      D       +P            +R+++        R    G      +VQ
Sbjct: 427 RTCPPAARTGDDAAEEAGIPVA---DEGTPDGDRAWVPGYASTDARAR--GRFARNFVVQ 481

Query: 604 AV-------------------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
                                + +               +V   HDE++   P+ +    
Sbjct: 482 GSAADWALLLLAALRRTLAGMAAE---------------LVFFQHDEVIVHCPEEEAETV 526

Query: 645 SMLYHLMTSNPSWAKGL 661
                 +      A  L
Sbjct: 527 ---VAAIREAAELAGRL 540


>gi|47934666|gb|AAT39771.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 209

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 73/223 (32%), Gaps = 44/223 (19%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +D+  AH+L   +  E   ++ EL+ +                      V +  
Sbjct: 1   ERNGFKLDIPFAHSLMMDLMFEVNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+    +TE     V     +   +       R    +  V ++++ 
Sbjct: 61  SRKQIAERLKG-LGVTFNKMTEKGNIIVDEKVLEGIDRPEAKAVARYMMLQKRVAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           + A+  DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LGAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVPAVSAP------------------- 159

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     R C    EG  LV  D +G+E R+LA    ++ 
Sbjct: 160 -----FGTECRQCWTVDEGNVLVGIDASGLELRMLAHYMDDED 197


>gi|91205563|ref|YP_537918.1| ribonuclease D [Rickettsia bellii RML369-C]
 gi|157827279|ref|YP_001496343.1| ribonuclease D [Rickettsia bellii OSU 85-389]
 gi|91069107|gb|ABE04829.1| Ribonuclease D [Rickettsia bellii RML369-C]
 gi|157802583|gb|ABV79306.1| Ribonuclease D [Rickettsia bellii OSU 85-389]
          Length = 203

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 33/185 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET         G+  Y +   + L  F   +    L   ++       LK  L +
Sbjct: 20  LAIDTET--------MGLNLYRD--KLCLLQFSNGNGDAHLVHFLNQNYNAPNLKNLLSD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
            +   + H + F+   +K    +D+      CT + ++          LK +   L    
Sbjct: 70  KERCKIFHFARFDLAAIKKYLGIDLE--NIFCTKISSKLVRTYTESHGLKDICREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +        N  + ++      EY   DV    ++ + L  +  
Sbjct: 124 --------LGVNISKQQQSSYWGADNLSSDQQ------EYAAKDVLYLHKLREHLIEMLV 169

Query: 181 KEQEL 185
           KE   
Sbjct: 170 KENRF 174


>gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1]
          Length = 206

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 31/203 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+  Y +   + +      D   ++            L + LE+
Sbjct: 22  IAVDTET--------LGLQPYRD--RLCVVQLSSGDGTADIIQIAKGQNSAPNLVKLLED 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H   F+  +L   F +        CT + ++                  ++  
Sbjct: 72  KAITKIFHFGRFDLAILAHTFGI--MPDVVFCTKIASKL-----------------TRTY 112

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREA--WRLFGEYCKGDVTVTREIFKRLEPLSSK 181
            +   L     +         +   +       R   EY   DV     +    E    +
Sbjct: 113 TDRHGLKEICSELLNVNISKQQQSSDWATETLSRAQIEYAASDVLYLHRLKSVFETRLKR 172

Query: 182 EQELWYLDQTINDRGYCVDVALA 204
           E+                 + L 
Sbjct: 173 EERENVAKACFQFLPMRAKLDLL 195


>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
          Length = 1404

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/428 (12%), Positives = 115/428 (26%), Gaps = 102/428 (23%)

Query: 260  QRVLSSNKKLT-PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
            +R +   +K    +A  V   R +   +  L L  L          RG+  FL +   GR
Sbjct: 1006 KRTIEQLRKRHLDEATFVVLQRHKLEVA-GLLLQKLQLE-------RGSANFLHSGTDGR 1057

Query: 319  WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--L 376
             S       +  +  +  +      +   +S  S  +  +     +R   ++  G+K   
Sbjct: 1058 LSI----LHSDNKVRQYIDLTATTTSRTTSSYPSCQNIPKDDKSSLRHLFVSRFGEKGRC 1113

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
            V  D + +E  V+A +  ++  +     G D +V   +    ++  ++            
Sbjct: 1114 VEIDYSQLEIVVMAVLCEDERLVSDLNQGVDFHVKRASFFSGISYDEIYN---------- 1163

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
               GY+ G   F K+                      +     +F R      P      
Sbjct: 1164 ---GYKRGEAKFLKL---------------------RKVAKTFSFQRLYGAGVPLLHKTT 1199

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                   +   +   +++  +S           +    G                     
Sbjct: 1200 GIPVQDLQECIRREEEEYPGISRFHRLARTVALRANNPGLPTHFI--------------- 1244

Query: 557  NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM- 615
               + LP+G  + Y               +          +    +Q+   + LA+ M+ 
Sbjct: 1245 ---VELPTGLRVCY---------------KTRDVVLNLPPVKNYPIQSFGAE-LAQMMIG 1285

Query: 616  NA---------TKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--------PSW 657
                             ++  VHD +  +   +           +M           P  
Sbjct: 1286 RVFRQFVRKSFYGQKAFMINFVHDSLWLDCHMSVLEECVHETRTIMEEVDTYVAKTFPGV 1345

Query: 658  AKGLPLKA 665
               +PLK 
Sbjct: 1346 KLKVPLKV 1353



 Score = 44.0 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 50/235 (21%), Gaps = 55/235 (23%)

Query: 68  IVAHNSYF------ERTVLKACFNLDIPIHRWICTLVLARSNGL------PSALKAVGEA 115
           IV H+         +   L+          R  CT+               ++L  V   
Sbjct: 504 IVCHDVKHFVLLIWDDPELRRFLK---RGGRVWCTMFAEYLLDAQRCQSGSNSLHDVAMK 560

Query: 116 LK-LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              L+ Q    G                                 Y    V     +F+ 
Sbjct: 561 YGILTPQSSVLG--------------------LSTPDLPIAFIQHYLVAAVDAISRVFQE 600

Query: 175 LEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL--- 222
                         +   +      +I   G  +D   A    Q +      +D+ L   
Sbjct: 601 QLKKACGNSQLICVAHRMDSLLAMASIEKAGIHIDSKEATLQAQAIRNRLLAIDKSLSLY 660

Query: 223 ----ESLTYGLVSSSRCLEKLKTWLF---LETGLHLEDLTETTCQRVLSSNKKLT 270
                 L          L+ L+ + F   +  G        +T    L       
Sbjct: 661 APDEIPLDMQRFFDWTSLQHLQAYFFGGSITLGYTDISRDSSTWTAHLIHLCHKY 715


>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei TREU927]
 gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            brucei]
 gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
            gambiense DAL972]
          Length = 1404

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/428 (12%), Positives = 115/428 (26%), Gaps = 102/428 (23%)

Query: 260  QRVLSSNKKLT-PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
            +R +   +K    +A  V   R +   +  L L  L          RG+  FL +   GR
Sbjct: 1006 KRTIEQLRKRHLDEATFVVLQRHKLEVA-GLLLQKLQLE-------RGSANFLHSGTDGR 1057

Query: 319  WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK--L 376
             S       +  +  +  +      +   +S  S  +  +     +R   ++  G+K   
Sbjct: 1058 LSI----LHSDNKVRQYIDLTATTTSRTTSSYPSCQNIPKDDKSSLRHLFVSRFGEKGRC 1113

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVME 436
            V  D + +E  V+A +  ++  +     G D +V   +    ++  ++            
Sbjct: 1114 VEIDYSQLEIVVMAVLCEDERLVSDLNQGVDFHVKRASFFSGISYDEIYN---------- 1163

Query: 437  LALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIED 496
               GY+ G   F K+                      +     +F R      P      
Sbjct: 1164 ---GYKRGEAKFLKL---------------------RKVAKTFSFQRLYGAGVPLLHKTT 1199

Query: 497  LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                   +   +   +++  +S           +    G                     
Sbjct: 1200 GIPVQDLQECIRREEEEYPGISRFHRLARTVALRANNPGLPTHFI--------------- 1244

Query: 557  NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM- 615
               + LP+G  + Y               +          +    +Q+   + LA+ M+ 
Sbjct: 1245 ---VELPTGLRVCY---------------KTRDVVLNLPPVKNYPIQSFGAE-LAQMMIG 1285

Query: 616  NA---------TKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYHLMTSN--------PSW 657
                             ++  VHD +  +   +           +M           P  
Sbjct: 1286 RVFRQFVRKSFYGQKAFMINFVHDSLWLDCHMSVLEECVHETRTIMEEVDTYVAKTFPGV 1345

Query: 658  AKGLPLKA 665
               +PLK 
Sbjct: 1346 KLKVPLKV 1353



 Score = 44.0 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 50/235 (21%), Gaps = 55/235 (23%)

Query: 68  IVAHNSYF------ERTVLKACFNLDIPIHRWICTLVLARSNGL------PSALKAVGEA 115
           IV H+         +   L+          R  CT+               ++L  V   
Sbjct: 504 IVCHDVKHFVLLIWDDPELRRFLK---RGGRVWCTMFAEYLLDAQRCQSGSNSLHDVAMK 560

Query: 116 LK-LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              L+ Q    G                                 Y    V     +F+ 
Sbjct: 561 YGILTPQSSVLG--------------------LSTPDLPIAFIQHYLVAAVDAISRVFQE 600

Query: 175 LEP---------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL--- 222
                         +   +      +I   G  +D   A    Q +      +D+ L   
Sbjct: 601 QLKKACGNSQLICVAHRMDSLLAMASIEKAGIHIDSKEATLQAQAIRNRLLAIDKSLSLY 660

Query: 223 ----ESLTYGLVSSSRCLEKLKTWLF---LETGLHLEDLTETTCQRVLSSNKKLT 270
                 L          L+ L+ + F   +  G        +T    L       
Sbjct: 661 APDEIPLDMQRFFDWTSLQHLQAYFFGGSITLGYTDISRDSSTWTAHLIHLCHKY 715


>gi|188581677|ref|YP_001925122.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
 gi|179345175|gb|ACB80587.1| 3'-5' exonuclease [Methylobacterium populi BJ001]
          Length = 209

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 37/205 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++         P+ LK  L +
Sbjct: 25  IAIDTET--------LGLNPHRD--RLCVVQISRGDGSADVVQIRPGDPAPERLKAVLAD 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             +  + H + F+  VL   F   +      CT V ++          LK V   L  + 
Sbjct: 75  PQIVKIFHFARFDLAVLFKAFG--VMPMPVYCTKVASKLARTYTDRHGLKDVVRELVGVD 132

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                      +        Y   DV       +RL+ + 
Sbjct: 133 LSKQQQSSDW-------------GAEALSQAQID------YAASDVLHLHAARERLDAML 173

Query: 180 --SKEQELWYLDQTINDRGYCVDVA 202
                 E+             +D+A
Sbjct: 174 AREGRTEMAQACFDFLPTRAKLDLA 198


>gi|115374272|ref|ZP_01461557.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368693|gb|EAU67643.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 699

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 91/739 (12%), Positives = 172/739 (23%), Gaps = 183/739 (24%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKE 59
           M     D ET                   ++  +    +     L D        Q    
Sbjct: 1   MKIWSFDTETHRKRPGLVSPP--------LVCGSIAARELGSERLLD---KEQARQFFAN 49

Query: 60  ALENTDVTIVAHNSYFERTVLK--ACFNLD-----IPIHRWICTLVLARSNGLPSALKAV 112
           A+ N DV +V  N  ++  V+     + ++     +   R            +   L  V
Sbjct: 50  AISNRDVHLVGANLPYDLGVMAADNSWLIESIFDALDAGRLHDVATREALIDIAKGLHGV 109

Query: 113 G----------------------EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                                    L L   + +  K  +A   +    + +     P  
Sbjct: 110 DPTTGRKLDDDEGARYPLALLVKRYLGLDISEDK--KNPLAWRLRYGELDGVPVERWP-- 165

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPL------------SSKEQELWYLDQTINDRGYC 198
                   EY K D   T ++F + E                 +    ++    +  G  
Sbjct: 166 ----VEAVEYPKCDARYTIDVFFKQEEQARDVTNGGNLHAEPDQMRAAFVLHLASIWGLR 221

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET- 257
            +      L + V+ E  +     ++        S+  ++L   +    G +      + 
Sbjct: 222 TNGVAVAELRKRVEAEWQQNRIRFQAAGIFRADGSKDTKRLAALVTAAYGGNPPYTAPSA 281

Query: 258 --------TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
                   T +  L       P          +  +     L+ +   ++    L    +
Sbjct: 282 RYPDGQIATDRDTL--LGSGDPLLED-LGKSGKVDKYKSTYLDVVEAGVS----LPINPR 334

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
           F     T R S      Q LP+                                +R    
Sbjct: 335 FNVLVSTTRVSSD---YQQLPQKG-----------------------------GIREVHE 362

Query: 370 ASEGKKLVVADLAGIEARVL----AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
           A  G      D  G+E R +     W  G      A  +G D++    A           
Sbjct: 363 ARPGYVFCSVDYGGLELRTMAQRAIWELGYSKMADALNSGLDVHTLAAAEFLG---ESYA 419

Query: 426 KDQRAIGKVMELALGYQGGAKAF----QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                +     +A+ ++  AK          +   L  N  A    +     +  D    
Sbjct: 420 GLLAKVKAKDPVAVAFRQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLLAKRADMCGV 479

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
            R       +  +           + + W            +L +  +     G      
Sbjct: 480 ERVPVTVQRKPKMVCRTCVEVARELDEKWLAAWPE----QRDLQRKAKSLTYGGGVADVM 535

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                                              R     T            ++    
Sbjct: 536 ----------------------------IPGANILRGACGYT------------QILNTP 555

Query: 602 VQAVSRDILAEGMMNATKA----------GYDIVLTVHDEIVCE--------TPDTDEFN 643
            Q +       GM   ++           G  +VL VHDE++ E          D  E  
Sbjct: 556 FQGLGAVGCKLGMWRVSREMYTVRSSPLFGSRLVLNVHDELISELLADDQQRLHDAAERK 615

Query: 644 ASMLYHLM-TSNPSWAKGL 661
           A ++   M  + P  A  +
Sbjct: 616 ALLMRDAMKETTPDLAAAV 634


>gi|302535235|ref|ZP_07287577.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C]
 gi|302444130|gb|EFL15946.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C]
          Length = 559

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 87/312 (27%), Gaps = 77/312 (24%)

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P          +   H P    +   P +     +R  V+A  G +LVVAD   +E RVL
Sbjct: 277 PGRPLPPRVHPRRHPHRPLGHPTAAGPCRS-PKVIRRAVVADPGWRLVVADADQMEPRVL 335

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A ++ +   ++     EDLY     + F+              K+  L   Y        
Sbjct: 336 AAISRDPAFMEVAGRPEDLYTAVSRQGFSGDRD--------KAKIAVLGAVY-------- 379

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
               T+G  L   A L                                            
Sbjct: 380 --GQTSGDGLKNLAAL-------------------------------------------- 393

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
            R++  R     ++      +  E G+ +     R  P      + +   +    G    
Sbjct: 394 -RRRFPRAVAYVDD----AARAGEEGRLVRTWLGRTCPPPVGAAEADEAGIPQEQGPERA 448

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD--ILAEGMMNATKAGYD--IV 625
                    +  +     TR    G      +VQ  + D  +L    +    AG    +V
Sbjct: 449 ---DSAETGWTPSYASANTRAR--GRFTRNFVVQGSAADWALLMLAALRQATAGMRAELV 503

Query: 626 LTVHDEIVCETP 637
              HDE++   P
Sbjct: 504 FFQHDEVIVHCP 515


>gi|256375220|ref|YP_003098880.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
 gi|255919523|gb|ACU35034.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
          Length = 555

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/494 (11%), Positives = 114/494 (23%), Gaps = 138/494 (27%)

Query: 190 QTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCLEKL 239
             +   G      +   L   +               +L   + +   G   +       
Sbjct: 172 AEMTHFGLPWRRDVHEELLADLLGPRTAPGVRPRRLAELADRITAAFGGRAVNPDNPA-S 230

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
               F   G+ +        + +        P A  +       +R  V    + ++A  
Sbjct: 231 IVRAFAREGVDVPSARAWVIKEL------DHPAAEPLLAY-KELARLWVAHGWSWLDAWV 283

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +DGR R     +G   +GRW+        +PR                            
Sbjct: 284 ADGRFRPDY-VVGGVVSGRWATRGGAALQIPR---------------------------- 314

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +R+ V A  G +LV AD A +E RVLA ++ ++   +     +             
Sbjct: 315 ---SLRTAVRADPGWRLVAADAAQLEPRVLAALSRDRRLAEVAGEDDLYTTLAADSFHG- 370

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R   K+  L+  Y G +    ++ +                     + DA 
Sbjct: 371 --------DRGQAKIAMLSAMYGGTSGGAAELLAVL----------------RRRFPDAV 406

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
            +            +    +G       +AW +                +    + +A  
Sbjct: 407 GYVERAAREGERGGVVRSRLGRTSPAPSQAWHEA-------TGSADDGEDALRRSQRAAR 459

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
              R     V      +    +L + R                                 
Sbjct: 460 EWGRFTRNFVVQASAADWTAALLGALRR-------------------------------- 487

Query: 600 NIVQAVSRDILAEGMMNATKA--GYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPS 656
                              +      +V   HDE++   P        + +         
Sbjct: 488 ----------------RLHERAPEAHLVFFQHDEVLVHCPAGLAEVVCAEVVAAGEEASR 531

Query: 657 WAKG-----LPLKA 665
                     PLKA
Sbjct: 532 LVFEGTDVRFPLKA 545


>gi|159476518|ref|XP_001696358.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
 gi|158282583|gb|EDP08335.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
          Length = 894

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 84/313 (26%), Gaps = 56/313 (17%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+  +A  G+ LV AD + IE R+LA ++                              +
Sbjct: 616 RAAFVAPAGRLLVSADYSQIELRLLAHLS------------------------------I 645

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
           +   R   K +  A+ Y    +   +  S  G+ +     L   +S    +   ++F   
Sbjct: 646 SSRDREQAKRIIYAIIYGMSPQGLAQALSDHGVEVKEATAL--RSSFLRHFAGVQSFITS 703

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
              +   H      +      +        S    L  E  +    +I  G A    K  
Sbjct: 704 SLHHARRHGFITTGLLGRRRPISGL----ASNDVRLRAEAERKVVNSIVQGSAADLIKMA 759

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                                +    +  G        T    T                
Sbjct: 760 MTMWGTYSHPPAAGANEQQKQKQPQPQQTGGAAGAATGTRAAATDAAPQLPPGCPPP--- 816

Query: 605 VSRDILAEGMMNATKAGYDIVLTVHDEIVCET---PDTDEFNASMLYHLMTSNPSWAKGL 661
                         +   D++ ++HDEI+ E    P+  +   + +  LM      A  +
Sbjct: 817 ------------LEEGCVDLIGSIHDEILFECDARPEVLQRLVAAVRCLMCGVV--ALDV 862

Query: 662 PLKAEGYESKRYR 674
           PL  +    + + 
Sbjct: 863 PLCVKLSVGQSWG 875


>gi|296270208|ref|YP_003652840.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
 gi|296092995|gb|ADG88947.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833]
          Length = 538

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 90/336 (26%), Gaps = 77/336 (22%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCL 236
            +   +   G      +   L   +                L  E+ +     V +    
Sbjct: 165 LIAAEMRHHGMPWRQDVHDALLTELLGPRPAPGMRPARLQALADEISAAFGHPV-NPDSP 223

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
           ++L    F   G+ L        +RV        P    +       SR           
Sbjct: 224 QQLLK-AFKAAGIDLPSTRSHVLERV------DHPAVKPLLEY-KELSRLHSFYGWAWAA 275

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
                GR       +G   +GRW+        +P+                         
Sbjct: 276 QWVRGGRFHPEY-VVGGVVSGRWATSGGGALQIPK------------------------- 309

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R  V+A +G  LVVAD A +E RVLA M+G+            L        
Sbjct: 310 ------VMRRAVVADQGWTLVVADAAQLEPRVLAAMSGD----------AALARAAGEAD 353

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
              A A+     R   K+  L+  Y G +    ++ +                   + + 
Sbjct: 354 LYSALAEAFGGSRESAKIAMLSAMYGGTSGDAPRLLAVM----------------RQRFP 397

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            A  F         E  +   ++G  C    + WR+
Sbjct: 398 RAYAFVEEAARAGEEGRVVRSWLGRTCPPPSQRWRE 433



 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 40/156 (25%), Gaps = 31/156 (19%)

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                   R+    RQ+  R       + +A     E G+ + +   R  P         
Sbjct: 379 GGTSGDAPRLLAVMRQRFPRAYAF---VEEAAR-AGEEGRVVRSWLGRTCPP-------- 426

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD--ILAEGM 614
                 PS R           +  +       R    G      +VQA + +  +    +
Sbjct: 427 ------PSQRWRELT------AGPDGGRVARER----GRFTRNFVVQATAAEWALTLLAV 470

Query: 615 MN-ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
           +         +V   HDE++   P            
Sbjct: 471 LRGLLPDPARLVFFQHDEVMVHCPLHQAERVRAAVE 506


>gi|297201366|ref|ZP_06918763.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
 gi|297147869|gb|EFH28770.1| DNA polymerase I [Streptomyces sviceus ATCC 29083]
          Length = 563

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 60/418 (14%), Positives = 107/418 (25%), Gaps = 146/418 (34%)

Query: 254 LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA 313
             ++T +  + S     P    +     +  R  V    + ++    DGR R      G 
Sbjct: 239 KVKSTRRWEIQSL--DHPAVKPLVEY-KKLYRIWVAHGWSWLQDWVRDGRFRPEF-LAGG 294

Query: 314 SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
           + TGRW         +P+                                +R  V+A  G
Sbjct: 295 TVTGRWVTHGGGALQIPK-------------------------------VIRRAVVADPG 323

Query: 374 KKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
            +LVVAD   +E RVLA ++ +   ++      DLY +           +     RA  K
Sbjct: 324 WRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVS--------DRAFSGDRAQAK 375

Query: 434 VMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA 493
           +  L   Y            T+G  L   A L                            
Sbjct: 376 LAVLGAVY----------GQTSGDGLKNLAAL---------------------------- 397

Query: 494 IEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKK 553
                            R++  +     ++      +  E G+ +     R  P      
Sbjct: 398 -----------------RRRFPKAVAYVDD----AARAGEEGRLVRTWLGRTCPPAAGAG 436

Query: 554 DKNNLILM--LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV------ 605
           D     +    P+G+            ++       TR    G      +VQ        
Sbjct: 437 DAEEAGIPQDDPAGQ-----PASGEDGWVPGYASTNTRAR--GRFARNFVVQGSAADWAL 489

Query: 606 -------------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN-ASMLYH 649
                        + +               +V   HDE++   P  +     + +  
Sbjct: 490 LLLAALRQACAGMAAE---------------LVFFQHDEVIVHCPKEEAEAVVAAIRE 532


>gi|163851920|ref|YP_001639963.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
 gi|163663525|gb|ABY30892.1| 3'-5' exonuclease [Methylobacterium extorquens PA1]
          Length = 209

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 58/205 (28%), Gaps = 37/205 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++         P+ L   L +
Sbjct: 25  IAIDTET--------LGLNPHRD--RLCVVQVSRGDGSADVVQIRPGDPAPERLMAVLAD 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             V  + H + F+  VL   F   +      CT + ++          LK V   L  + 
Sbjct: 75  AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVRELVGVD 132

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                      +        Y   DV       +RL+ + 
Sbjct: 133 LSKQQQSSDW-------------GAGTLSQAQID------YAASDVLHLHAARERLDAML 173

Query: 180 --SKEQELWYLDQTINDRGYCVDVA 202
                 E+             +D+A
Sbjct: 174 AREGRTEMAQACFDFLPTRSKLDLA 198


>gi|218530671|ref|YP_002421487.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
 gi|218522974|gb|ACK83559.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4]
          Length = 209

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 37/205 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++         P+ LK  L +
Sbjct: 25  IAIDTET--------LGLNPHRD--RLCVVQVSRGDGSADVVQIRPSDPAPERLKAVLAD 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             V  + H + F+  VL   F   +      CT + ++          LK V   L  + 
Sbjct: 75  AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVRELVGVD 132

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                      +        Y   DV       +RL+ + 
Sbjct: 133 LSKQQQSSDW-------------GAATLSQAQID------YAASDVLHLHAARERLDAML 173

Query: 180 --SKEQELWYLDQTINDRGYCVDVA 202
                 E+             +D+A
Sbjct: 174 AREGRTEMAQACFDFLPTRSKLDLA 198


>gi|294085087|ref|YP_003551847.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664662|gb|ADE39763.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 418

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/503 (10%), Positives = 108/503 (21%), Gaps = 134/503 (26%)

Query: 168 TREIFKRLEPLSSKEQ---ELWYLDQTINDRGYCVDVALAHTLNQ---IVDVERTKLDQE 221
               +        +             +  RG  +D      +            +   +
Sbjct: 1   MLAHWPVGPMDLDQVLTRGRYVATVALMEHRGVPIDTTTLGLMRDNWHDFKQALIEKTDQ 60

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ---RVLSSNKKLTPQAIQVFN 278
              +             L         +    L     Q             PQ  ++  
Sbjct: 61  AYGVYDKGSFRV----HLFEHYLGAENIAWPRLASGELQLDRDTFKMMALRHPQLAELRE 116

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
            R   +    +KL      +  DGR R  L    + +TGR         N P  ++    
Sbjct: 117 LRKTLAEMREIKLT-----VGRDGRNRTLLSPFNS-KTGR---------NQPSTTK---- 157

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWK 398
                             +  +    RS +    G  L   D +  E  + A ++G+   
Sbjct: 158 -----------------FIFGLPAWARSLIKPEPGTALAYLDFSSQEIAIAACLSGDDAL 200

Query: 399 LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLN 458
            +A+ +G+                                           + A   GL 
Sbjct: 201 WQAYASGDPYI----------------------------------------QFAIDAGL- 219

Query: 459 LNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVS 518
                   +++ A  +             +      +        E + +  +  +    
Sbjct: 220 -APVGATKESHKAERDACKVIMLGVQYGMSAYGMGQKASLHVLEAEDLLQRHKDVY---L 275

Query: 519 ELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
             W    +     +   +       +               +    GR     DV  N  
Sbjct: 276 TFWRWAERNVNAGLAGVELHTVFGWK---------------IRAGKGR-----DVKEN-- 313

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                                  +QA   ++L    +   +    +   VHD I+ E P 
Sbjct: 314 -----------------TFLNWPMQANGAEMLRLAYIALEEESIVMCAPVHDAILIEAPL 356

Query: 639 TDEFN-ASMLYHLMTSNPSWAKG 660
                      H M     W  G
Sbjct: 357 DAIDQHVERATHEMQKASGWVLG 379


>gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
 gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
 gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
 gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
 gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
 gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
          Length = 217

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 42/187 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC------VHDPVMPQVL 57
           + +D ET         G+  + +   + L      D    L               P  L
Sbjct: 27  VAVDTET--------MGLNPHRD--RLCLVQLSAGDGTAHLVQIIPTSLGGKGYDCP-NL 75

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE 114
           K  L +  +T + H + F+  +L+    + +     +CT + AR          L A+  
Sbjct: 76  KRVLADPSITKIMHFARFDVAILQHALGITVSP--VVCTKIAARLVRTFTDRHGLAALCR 133

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L +   K ++  +  A+  K E                      Y   DV     ++ 
Sbjct: 134 DMLGVELSKQQQTSDWGAKELKPEQ-------------------LAYAASDVLYLHALWD 174

Query: 174 RLEPLSS 180
           ++  L  
Sbjct: 175 KMSALLD 181


>gi|33300830|ref|NP_877458.1| putative DNA directed DNA polymerase [Pseudomonas phage phiKMV]
 gi|195546662|ref|YP_002117743.1| DNA directed DNA polymerase [Pseudomonas phage PT5]
 gi|195546724|ref|YP_002117802.1| putative exonuclease [Pseudomonas phage PT2]
 gi|33284801|emb|CAD44210.1| putative DNA directed DNA polymerase [Enterobacteria phage phiKMV]
 gi|158187623|gb|ABW23100.1| DNA directed DNA polymerase [Pseudomonas phage PT5]
 gi|165880733|gb|ABY70988.1| putative exonuclease [Pseudomonas phage PT2]
          Length = 807

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/428 (9%), Positives = 95/428 (22%), Gaps = 83/428 (19%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAMNSDG 302
           +T    L + +K   +A ++        +                      +++ ++ DG
Sbjct: 399 STSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQYVDDDG 458

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            +  +L    A+ T R S      Q LP       E                        
Sbjct: 459 IIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDPEA---------------------GS 496

Query: 363 CVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
            V+   ++  G    +   D   +E  +LA ++ ++  L     G D++           
Sbjct: 497 RVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLLAKLMAGTDMH----------- 545

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                     +                F        +  +             +    + 
Sbjct: 546 -------LYRLAGKHN-------NWNGF-DYDQLVAIKKDPNHPWHGRMMQARKNIKPKA 590

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT----IENGK 536
           F      +    A          +                   +  + E T     +   
Sbjct: 591 FSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSAEATSLVMYKAED 650

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            + A    ++      +         P G    +R           T             
Sbjct: 651 QMPAGAFSEMGPDGNWRQYRRGFWQAPGGTCYSFRQQERWDKEQRKTVMDFKDTQI---- 706

Query: 597 LTENIVQAVSRDILAEGMMNA-----TKAGY----DIVLTVHDEIVCETPDTDEFNASM- 646
                 Q  +  ++   +         + G+     ++  VHD +  +         +  
Sbjct: 707 -ANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLINNVHDAVYTDCHKDTAAEVNKG 765

Query: 647 LYHLMTSN 654
           +  +M   
Sbjct: 766 VRDIMADA 773



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 70/280 (25%), Gaps = 56/280 (20%)

Query: 1   MATL-FIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVL 57
           M T+  +D ET S       G      D    +++  +  D       D      +    
Sbjct: 1   MTTIRILDLETESH---EHKGRKASPFDPRNYIVMAGWRDD------VDGKVGQKVEHRF 51

Query: 58  K--EALENTDVTI---------VAHNSYFERTVL-----KACFNLDIPIHRWICTLVLAR 101
           +     E+ +            VAHN+ FE                    R  CT     
Sbjct: 52  RSRAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEY 111

Query: 102 SNG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                  L  AL  +       + K++  K L                     ++    +
Sbjct: 112 LLSHQTWLYPALDELAPKYG-GTHKVDGIKMLWD----------QGVLTSEMDQDLLSEY 160

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCVDVALAHTLN 208
                GD+  T  +F                 +              G  VD+ +A   +
Sbjct: 161 LSGPCGDIENTALVFYGQLMKLQARGMWAGYLERCEALIGFSAMECAGLKVDLEVAKVNH 220

Query: 209 QIVDVERTKLDQELESLT----YGLVSSSRCLEKLKTWLF 244
                E   ++ EL+ L              L  +  WL+
Sbjct: 221 AKQLEEVAGIEAELKKLMPDFPEYFEFKYTSLYHMSAWLY 260


>gi|167600464|ref|YP_001671963.1| DNA polymerase [Pseudomonas phage LUZ19]
 gi|161168327|emb|CAP45491.1| DNA polymerase [Pseudomonas phage LUZ19]
          Length = 807

 Score = 77.8 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/428 (9%), Positives = 95/428 (22%), Gaps = 83/428 (19%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAMNSDG 302
           +T    L + +K   +A ++        +                      +++ ++ DG
Sbjct: 399 STSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQYVDDDG 458

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            +  +L    A+ T R S      Q LP       E                        
Sbjct: 459 IIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDPEA---------------------GS 496

Query: 363 CVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
            V+   ++  G    +   D   +E  +LA ++ ++  L     G D++           
Sbjct: 497 RVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLLAKLMAGTDMH----------- 545

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                     +                F        +  +             +    + 
Sbjct: 546 -------LYRLAGKHN-------NWNGF-DYDQLVAIKKDPNHPWHGRMMQARKNIKPKA 590

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT----IENGK 536
           F      +    A          +                   +  + E T     +   
Sbjct: 591 FSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSAEATSLVMYKAED 650

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            + A    ++      +         P G    +R           T             
Sbjct: 651 QMPAGAFSEMGPDGNWRQYRRGFWQAPGGTCYSFRQQERWDKEQRKTVMDFKDTQI---- 706

Query: 597 LTENIVQAVSRDILAEGMMNA-----TKAGY----DIVLTVHDEIVCETPDTDEFNASM- 646
                 Q  +  ++   +         + G+     ++  VHD +  +         +  
Sbjct: 707 -ANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLINNVHDAVYTDCHKDTAAEVNKG 765

Query: 647 LYHLMTSN 654
           +  +M   
Sbjct: 766 VRDIMADA 773



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 70/280 (25%), Gaps = 56/280 (20%)

Query: 1   MATL-FIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVL 57
           M T+  +D ET S       G      D    +++  +  D       D      +    
Sbjct: 1   MTTIRILDLETES---YEHKGRKASPFDPRNYIVMAGWRDD------VDGKVGQKVEHRF 51

Query: 58  K--EALENTDVTI---------VAHNSYFERTVL-----KACFNLDIPIHRWICTLVLAR 101
           +     E+ +            VAHN+ FE                    R  CT     
Sbjct: 52  RSRAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEY 111

Query: 102 SNG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                  L  AL  +       + K++  K L                     ++    +
Sbjct: 112 LLSHQTWLYPALDELAPKYG-GTHKVDGIKMLWD----------QGVLTSEMDQDLLSEY 160

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCVDVALAHTLN 208
                GD+  T  +F                 +              G  VD+ +A   +
Sbjct: 161 LSGPCGDIENTALVFYGQLMKLQARGMWAGYLERCEALIGFSAMECAGLKVDLEVAKVNH 220

Query: 209 QIVDVERTKLDQELESLT----YGLVSSSRCLEKLKTWLF 244
                E   ++ EL+ L              L  +  WL+
Sbjct: 221 AKQLEEVAGIEAELKKLMPDFPEYFEFKYTSLYHMSAWLY 260


>gi|88856344|ref|ZP_01131003.1| DNA polymerase I [marine actinobacterium PHSC20C1]
 gi|88814428|gb|EAR24291.1| DNA polymerase I [marine actinobacterium PHSC20C1]
          Length = 523

 Score = 77.5 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 88/538 (16%), Positives = 140/538 (26%), Gaps = 153/538 (28%)

Query: 161 CKGDVTVTREIFKRLEP----------LSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
              D   T      L             SS  QE  +  + +   G+ +DV L +    +
Sbjct: 115 AARDAVATARFVVALPDDASAATRAAVWSSCAQEQLWRSRQLE--GHPIDVELLNRELAM 172

Query: 211 VDVERTKLDQEL-ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS---N 266
            D  R     EL   LT     ++R  + +  WL       ++     +  R L      
Sbjct: 173 ADAHRVAAIAELGIDLTDSA--TARGSKAIHAWLAPVGVFLVDAKGAPSLSRDLYDRVSI 230

Query: 267 KKLTPQAIQVFNNRMRASRSA-VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
            +      +    R   S ++ V KL  +  A+N +GR   TL    A RTGR +     
Sbjct: 231 PETDEAQSRWKKFREVRSVASRVGKLREIQRALN-NGRTHSTLYVRRA-RTGRGAVTGPA 288

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
            QN+ R                                +R  ++A  G+ LV  D + +E
Sbjct: 289 LQNIHRG-------------------------------LRPLLMAPVGEVLVSLDFSQME 317

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ----VTKDQRAIGKVMELALGY 441
            RV A ++ +   L A E+  DLY     R +               R   K + L + Y
Sbjct: 318 PRVSAGLSQDPDLLAALES-GDLYAELSRRIWGAEADDADGKPNPLLRDRAKTLMLGIFY 376

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G  A                                                      
Sbjct: 377 GEGKNAL--------------------------------------------GRALGIEPK 392

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             + +  +       +      L                                     
Sbjct: 393 DAKVLLDSVWAAFPGLQAYDLWLQSEVRAGR--------------------------PAF 426

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
              GR +     G                         N VQA S DI    +       
Sbjct: 427 TQDGRPVPLPKRGL-------------------HAALNNRVQAESADIFWAAVARVAAVL 467

Query: 622 YD--IVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA-EGYESKRYRK 675
               + L VHDE+V   P      A ++    M +     +G+P+        + +RK
Sbjct: 468 GPKSLFLGVHDELVVSVPANRSEWARIVLEREMNTVF---RGVPVTGTAVVIGRSWRK 522


>gi|255326718|ref|ZP_05367794.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296]
 gi|255295935|gb|EET75276.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296]
          Length = 668

 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 59/443 (13%), Positives = 117/443 (26%), Gaps = 109/443 (24%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKK 268
            +  +L ++++ + +    +    + L   L    G+ ++       ++    + +  +K
Sbjct: 299 QKMQELAEQIQRMLFMPSLNPDSPQDLLRALQSA-GVSVKSTRSWELKSWADAIPAQRQK 357

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                  +     +  R       T  +   S+G  R  L+  GA+ TGRW         
Sbjct: 358 RWAMIDPILRY-KKLYRIWTANGWTWADTWVSEGAFRPHLEVGGAA-TGRWGASGGGALQ 415

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           LP                                 +R  V A EG+ L V D + IE R+
Sbjct: 416 LP-------------------------------AEIRQAVQAPEGQVLTVTDGSQIEPRI 444

Query: 389 LAWMAGEQWKLKAFETGEDLY-VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           LA ++ ++    A    +    +   AR   V   + +       KV  LA+ Y G +  
Sbjct: 445 LAALSRDEALASAGRGADLYAGIAELARMKGVGLTERSH-----AKVGMLAIMYGGRSGE 499

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +                       +  A +F                F+G     V 
Sbjct: 500 IGALLP----------------HVAALFPQAMDFTERAARIGEAGGQVTTFLGRTSPPVD 543

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + +R+  +          +A      +G+       +     +       +   L S R 
Sbjct: 544 ERFREIVAD-RSSPAAESRAVSSARAHGRMTRNFIVQGTAAEWALCWMGAVRSRLLSERI 602

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
                                                                   IV  
Sbjct: 603 FGMP------------------------------------------------MRTRIVYF 614

Query: 628 VHDEIVCETPDTDEFNASMLYHL 650
           +HDE++   P+ +      +   
Sbjct: 615 LHDELLLCGPELEADRVERIVRE 637


>gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1419

 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 92/380 (24%), Gaps = 109/380 (28%)

Query: 295  VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            +  ++ DGR+   +  + A+ T R        QN+P+  +S                   
Sbjct: 1062 LAILHRDGRVHQHI-DMTATTTSRTVSAYPSCQNIPKDDKS------------------- 1101

Query: 355  DPLQIISDCVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                     VR   ++  G   + V  D + +E  VLA +  +         G D +V  
Sbjct: 1102 --------SVRRLFVSRFGSQGRCVEVDYSQLEIVVLAILCNDANLTHDLNHGVDFHVKR 1153

Query: 413  YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
             A    +   +                 YQG  +   K                      
Sbjct: 1154 AAFFSGLPYDE----------------IYQGYKRNVPKYVK------------------L 1179

Query: 473  EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
                   +F R      P             E   +   + +  +++    +     +  
Sbjct: 1180 RRTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEAYPGIAQFHRTIRSVALRPN 1239

Query: 533  ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
              G                          +P+G  +                 +      
Sbjct: 1240 NPGLPTSFI------------------AEMPTGLRMSL---------------RTRDVVL 1266

Query: 593  YGGKLTENIVQAVSRDILAEGMM----------NATKAGYDIVLTVHDEIVCETPDTDE- 641
                +    +Q    + LA+ M+          +  K    ++  VHD +  +       
Sbjct: 1267 NLPPIKNYPIQGYGAE-LAQMMLGRLFRHFMRRDFYKNRAFLINFVHDSVWMDCHVDVLR 1325

Query: 642  FNASMLYHLMTSNPSWAKGL 661
               +    ++ S   +   +
Sbjct: 1326 ECVTDTCRILGSAHEYVPKV 1345


>gi|114797270|ref|YP_758935.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
 gi|114737444|gb|ABI75569.1| putative exonuclease [Hyphomonas neptunium ATCC 15444]
          Length = 204

 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 36/206 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E          G+    ++  + L      D    L     D   P  LK  L 
Sbjct: 20  VIAVDTE--------AMGLNAMRDN--LTLVQVSSGDGTAHLVQLTRDYDCP-NLKALLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKL 118
           +  V  + H + F+  ++K    +        CT + +R          LK V  E   +
Sbjct: 69  DPKVLKIFHFARFDVVMMKRWMGITCAP--IWCTKIASRLARTYTDRHGLKDVAREVAGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                    + +       +Y   DV    +I   LE +
Sbjct: 127 DMSKAQQSSDW-------------GQDKLTDAQI------QYAASDVLYLHQIKAGLEAM 167

Query: 179 SSKEQELWYLDQTINDRGYCVDVALA 204
             +E  L       +      D+ LA
Sbjct: 168 LEREGRLELAQACFDFLPIRADLDLA 193


>gi|323136907|ref|ZP_08071987.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
 gi|322397668|gb|EFY00190.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242]
          Length = 204

 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 52/180 (28%), Gaps = 33/180 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET             +  D  + +      D   EL          + L + L 
Sbjct: 19  IVAIDTETLGLN---------HRRD-RLCVVQLSIGDGDAELVQIAKGQTQAENLVKLLV 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           +  V  + H + F+  +L   F   +      CT + ++          LK +   L   
Sbjct: 69  DPKVLKLFHFARFDMGILAKTFG--VMPAPVYCTKIASKLTRTYTDRHGLKDLAREL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                          K +           + ++A      Y   DV    ++ ++L+ + 
Sbjct: 124 ---------AGVEISKQQQSSDWGAATLTDAQQA------YAASDVLYLHQLKEKLDAML 168


>gi|115522454|ref|YP_779365.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
 gi|115516401|gb|ABJ04385.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53]
          Length = 204

 Score = 77.5 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 57/180 (31%), Gaps = 35/180 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            LK+ L +
Sbjct: 20  VAIDTET--------MGLNPHRD--RLCVVQLSNGDGSADVVQIPLGHTEAPNLKKLLGD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119
             VT + H + F+ + L       +      CT + +R          LK +  E L + 
Sbjct: 70  PAVTKIFHFARFDLSALSNALG--VMPQPIYCTKIASRLCRTYTDRHGLKDLVREVLGID 127

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                +N  + + A      Y   DV     +  RL+ + 
Sbjct: 128 LSKQQQSSDW-------------GAQNLTDAQLA------YAASDVLHLHALRARLDAML 168


>gi|291571594|dbj|BAI93866.1| ribonuclease D [Arthrospira platensis NIES-39]
          Length = 207

 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 26/186 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET         G+  + +   + L         V              LK  LE 
Sbjct: 25  LAIDTET--------MGLLPWRD--RLCLVQICDPKGQVVAIRIERGQREAPNLKTLLET 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           T++  V H + F+   L+    +++      CT + ++          +           
Sbjct: 75  TNILKVFHFARFDVATLRHNLGIEVNP--VFCTKIASK----------LARTY----TGK 118

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+LI      E  +     +  N          Y   DV        +L  +  +E+
Sbjct: 119 HGLKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLKREE 178

Query: 184 ELWYLD 189
                 
Sbjct: 179 RWDLAL 184


>gi|283457405|ref|YP_003361981.1| DNA polymerase I [Rothia mucilaginosa DY-18]
 gi|283133396|dbj|BAI64161.1| DNA polymerase I [Rothia mucilaginosa DY-18]
          Length = 668

 Score = 77.1 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 59/443 (13%), Positives = 115/443 (25%), Gaps = 109/443 (24%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKK 268
            +  +L ++++ + +    +    + L   L    G+ ++       ++    + +   K
Sbjct: 299 QKMQELAEQIQRMLFMPSLNPDSPQDLLRALQSA-GVSVKSTRSWELKSWADAIPAQRDK 357

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
                  +     +  R       T  +   S+G  R  L+  GA+ TGRW         
Sbjct: 358 RWALIDPILRY-KKLYRIWTANGWTWADTWVSEGAFRPHLEVGGAA-TGRWGASGGGALQ 415

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           LP                                 +R  V A EG+ L V D + IE R+
Sbjct: 416 LP-------------------------------AEIRQAVQAPEGQVLTVTDGSQIEPRI 444

Query: 389 LAWMAGEQWKLKAFETGEDLY-VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           LA ++ ++    A    +    +   AR   V   + +       KV  LA+ Y G +  
Sbjct: 445 LAALSRDEALASAGRGADLYAGIAELARLKGVGLTERSH-----AKVGMLAIMYGGRSGE 499

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
              +                       +  A  F                F+G     V 
Sbjct: 500 IGALLP----------------HVAALFPQAMEFTERAARIGEAGGQVTTFLGRTSPPVD 543

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + +R+  +          +A      +G+       +     +       +   L S R 
Sbjct: 544 ERFREIVAD-RSSPAAESRAVSTARAHGRMTRNFIVQGTAAEWALCWMGAVRSRLLSERI 602

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
                                                                   IV  
Sbjct: 603 FGMP------------------------------------------------MRTRIVYF 614

Query: 628 VHDEIVCETPDTDEFNASMLYHL 650
           +HDE++   P+ +      +   
Sbjct: 615 LHDELLLCGPELEADRVERIVRE 637


>gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
 gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
          Length = 388

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 35/194 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E  S        +  Y E  C++       +    + D + D  + + L   L
Sbjct: 35  KCIAVDLEADS--------MFHYQEKACLLQI---TSNGLNYIVDPLCDCDV-KALAPIL 82

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLS 119
           EN ++  + H + ++   L   F +++  H    T V AR  G P   L  + E    + 
Sbjct: 83  ENDEIQKIFHGADYDVRCLFRDFGIEL--HNLFDTQVAARFLGEPQTGLAPLLESRFGVQ 140

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +K  +                   +N         +   Y   D     E+ + L+   
Sbjct: 141 LEKKYQ------------------KKNWSLRPLPPEMMA-YAANDTVHLLELAEILKKEL 181

Query: 180 SKEQELWYLDQTIN 193
            ++  L+++++   
Sbjct: 182 VEKDRLFWVEEECE 195


>gi|168702959|ref|ZP_02735236.1| hypothetical protein GobsU_25749 [Gemmata obscuriglobus UQM 2246]
          Length = 209

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 67/209 (32%), Gaps = 37/209 (17%)

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           L      +     ++K   F + G  L      T      +   +      +      A+
Sbjct: 36  LPGRETRNWDSPSQVKAA-FAQLGFAL----AATDDD--DTLAGIAHPLGALVREYRAAA 88

Query: 285 RSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           +         VE    DG +  +   LGA   GR S      Q +PR S           
Sbjct: 89  KRLSTYGRVWVEKHVQDGAVLPSWNQLGAES-GRMSCSDPNLQQVPRGSAH--------- 138

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
                               R C  A     LV AD +  E R+ A +A E+  + A+  
Sbjct: 139 --------------------RRCFTARPEHPLVKADYSQTELRIAAKVAREKVMMAAYAD 178

Query: 405 GEDLYVTTYARSFNVAPAQVTKDQRAIGK 433
           G DL+  T AR  N     VTKD R + K
Sbjct: 179 GRDLHALTAARVLNKDEDAVTKDDRQLAK 207


>gi|284053636|ref|ZP_06383846.1| 3'-5' exonuclease [Arthrospira platensis str. Paraca]
          Length = 209

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 26/186 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET         G+  + +   + L         V              LK  LE 
Sbjct: 27  LAIDTET--------MGLLPWRD--RLCLVQICDPKGQVVAIRIERGQREAPNLKTLLET 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           T++  V H + F+   L+    +++      CT + ++          +           
Sbjct: 77  TNILKVFHFARFDVATLRHNLGIEVNP--VFCTKIASK----------LARTY----TGK 120

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+LI      E  +     +  N          Y   DV        +L  +  +E+
Sbjct: 121 HGLKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLKREE 180

Query: 184 ELWYLD 189
                 
Sbjct: 181 RWDLAL 186


>gi|241207041|ref|YP_002978137.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860931|gb|ACS58598.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 208

 Score = 77.1 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 50/208 (24%), Gaps = 27/208 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++          + L   LE+
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADIIRIAAGQKEARNLVALLED 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H   F+  VL   F +        CT + +R            +   L   K 
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVT--ATPVFCTKIASRLIR------TYTDRHGL---KD 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L     K +             +       EY   DV     +  +L     ++ 
Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAERLSPAQ------LEYAASDVLYLHALRDKLTERLIRDG 176

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211
              +             + L       +
Sbjct: 177 RYDHATACFEFLPTRAKLDLLGWEEADI 204


>gi|17231283|ref|NP_487831.1| ribonuclease D [Nostoc sp. PCC 7120]
 gi|17132925|dbj|BAB75490.1| ribonuclease D [Nostoc sp. PCC 7120]
          Length = 209

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 58/202 (28%), Gaps = 26/202 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET   +           +   + L      +  V              LK+ LE 
Sbjct: 27  IAVDTETMGLLP----------QRDRLCLIQLCNPEGKVTAIRIAQGQTAAPNLKKLLEA 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           T+V  V H + F+   L    ++ +      CT + ++     +    +           
Sbjct: 77  TNVLKVFHFARFDVATLLHHLDIHVQP--IFCTKIASKLARTYTNRHGL----------- 123

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+L+    + E  +     +  N          Y   DV       ++L  +  +E+
Sbjct: 124 ---KDLVHELEQVELDKSAQGSDWGNAANLTEAQLSYAANDVRYLLSAQQKLVAMLKREE 180

Query: 184 ELWYLDQTINDRGYCVDVALAH 205
                 Q        V + L  
Sbjct: 181 RWELAQQCFQVLPTIVSLDLLQ 202


>gi|218440719|ref|YP_002379048.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
 gi|218173447|gb|ACK72180.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
          Length = 209

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 63/204 (30%), Gaps = 34/204 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+  + +   + L      +  V              LK+ +E 
Sbjct: 27  IAVDTET--------MGLNPHRD--RLCLIQLCDPEGYVTAIRVTKGQQEAPKLKQLMEA 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
           +++T V H + F+   L+  F ++       CT + ++          LK++   L  + 
Sbjct: 77  SNITKVFHFARFDVAQLRHHFGIE--TTPIFCTKIASKLARTYTSSHGLKSLVLELEGVE 134

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                       +       Y   DV     + ++L  + 
Sbjct: 135 LDKTAQSSDWGN------------------ADKLSEEQLSYAANDVRYLLGVKEKLISML 176

Query: 180 SKEQELWYLDQTINDRGYCVDVAL 203
           ++E  +       N     V + L
Sbjct: 177 NRENRMELARNCFNCLPVLVSLDL 200


>gi|281306681|ref|YP_003345487.1| hypothetical protein SBWP25_0022 [Pseudomonas phage phi-2]
 gi|271277986|emb|CBH51592.1| hypothetical phage protein [Pseudomonas phage phi-2]
          Length = 331

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 27/215 (12%)

Query: 2   ATLFIDFET------RSPIDLTKCGICKYAEDVCVILFAFGFDDHP-VELWDC----VHD 50
             L ID ET         +     G+ +  E+  ++ +   +   P V   D       D
Sbjct: 76  RILLIDIETAPILGYVWSLWKQNVGLNQIKEEWYILSYCAKWLGEPEVIYEDIRENPFCD 135

Query: 51  PVMPQVLKEALENTDVTIVAHNSY-FERT------VLKACFNLDIPIHRWICTLVLARSN 103
             +   L + + +    I+  N   F+        V+          ++ I T+++A+  
Sbjct: 136 KPLLAGLWKLM-DEADIIIGQNGKAFDMPKIQARLVMNGYL--PPRPYKVIDTMLMAK-- 190

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                 +     L+  + +      L            L+      + EAW    EY   
Sbjct: 191 ---QQFRFTSNKLEWMTGESANLTTLTKSKHSKFPGFLLWAECLKKNPEAWDEMKEYNIP 247

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
           DVT   E++ +L P   ++           +    
Sbjct: 248 DVTSMEELYLKLRPW-YQQHPNLAAYVESEEMLCP 281


>gi|197935875|ref|YP_002213711.1| hypothetical protein RSB1_gp22 [Ralstonia phage RSB1]
 gi|197927038|dbj|BAG70380.1| hypothetical protein [Ralstonia phage RSB1]
          Length = 264

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 74/218 (33%), Gaps = 34/218 (15%)

Query: 2   ATLFIDFET-------RSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVH---- 49
             L ID ET           D     + +   +  ++ F   +     V   D  +    
Sbjct: 5   KILTIDIETSPIGAHVWRLFD-ENVALNQITAEWTILSFCAKWLGSDEVIYEDTFNQRNK 63

Query: 50  --DPVMPQVLKEALENTDVTIVAHNS-YFER-TVLKACF--NLDIP-IHRWICTLVLAR- 101
             D  + + + + L +    ++  N   F+R  +        L  P  +R + T+++AR 
Sbjct: 64  RDDKRIVKRIHKLL-DEADIVIGQNVQKFDRRKINARFIMNGLTPPSPYRVVDTMLMARK 122

Query: 102 SNGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
           + G  S  L+ + E L    +K++          K      L+      + EA     EY
Sbjct: 123 TFGFTSNKLEWLSEKLCTQYKKLKH---------KKFPGFELWAAFLAGNPEAQEEMREY 173

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTI--NDRG 196
              DV  T E++ +L P       +   D+      R 
Sbjct: 174 NIVDVRSTEELYLKLRPWHPGHPNVNTYDEDAGDEMRC 211


>gi|157964505|ref|YP_001499329.1| ribonuclease D [Rickettsia massiliae MTU5]
 gi|157844281|gb|ABV84782.1| Ribonuclease D [Rickettsia massiliae MTU5]
          Length = 203

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 34/195 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET         G+  + +   + L  F   +    L    +       LK  L +
Sbjct: 20  LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFTNQDYTAPNLKALLLD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H + F+   +K   ++D+      CT + ++          LK +   L    
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLKDLCREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +        N            EY   DV    ++   L+ +  
Sbjct: 124 --------LNINISKQQQSSYWGADNLS------SEQKEYAAKDVLYLHQLKDILQKMLL 169

Query: 181 KEQELWYLDQTINDR 195
           KE   + L Q I   
Sbjct: 170 KENR-YELAQDIFHF 183


>gi|51473610|ref|YP_067367.1| ribonuclease D [Rickettsia typhi str. Wilmington]
 gi|51459922|gb|AAU03885.1| ribonuclease D [Rickettsia typhi str. Wilmington]
          Length = 203

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 33/203 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+  + +   + L  F   +    L   ++       LK  L +
Sbjct: 20  IAVDTET--------MGLNIHRD--KLCLLQFSNGNGAAHLVHFINQDYTAPNLKALLLD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H + F+   +K   ++D+      CT + ++          LK +   L    
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLKDLCREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +        N    +       EY   DV    ++   L+ +  
Sbjct: 124 --------LNINISKQQQSSYWGTDNLSLEQ------KEYAAKDVLYLHQLKDILQKMLF 169

Query: 181 KEQELWYLDQTINDRGYCVDVAL 203
           +E  L    +        V++ L
Sbjct: 170 RENRLELAHEIFRFLPTRVNLDL 192


>gi|158345168|ref|YP_001522875.1| hypothetical protein PPLKA1_gp34 [Enterobacteria phage LKA1]
 gi|114796464|emb|CAK25002.1| hypothetical protein [Pseudomonas phage LKA1]
          Length = 343

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 66/202 (32%), Gaps = 35/202 (17%)

Query: 3   TLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGFDDHP-VELWDCVHDPVMPQ 55
            L ID ET         +     G+ +  ++  ++ +   +   P V   D      +  
Sbjct: 90  ILSIDIETSPIEGRVWGLWKQNLGLNQITKEWNILSYCAKWLGDPNVIYSDLSQAENIAD 149

Query: 56  ------VLKEALENTDVTIVAHNSY-FERTVLKACF---NLDIP-IHRWICTLVLARSNG 104
                  L E L N    +VA N   F+   ++A F       P   R I T+++A+   
Sbjct: 150 DSKLVAELYELL-NEADLVVAQNGKRFDLPKIQARFVMAGYKPPRPFRVIDTMLMAK--- 205

Query: 105 LPSALKAVGEALKLSSQKME--EGKELIARFCKGETHECLYDRN--KPNHREAWRLFGEY 160
                    +    +S K+E    K    +  K E    +   N     + EAW     Y
Sbjct: 206 ---------QQFGFTSNKLEWMTDKLCTTKKRKHEKFPGMELWNQCLAGNPEAWEEMRLY 256

Query: 161 CKGDVTVTREIFKRLEPLSSKE 182
              DV    E++  L P     
Sbjct: 257 NIDDVISLEELYLILRPWYQGH 278


>gi|119487547|ref|ZP_01621157.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106]
 gi|119455716|gb|EAW36852.1| hypothetical protein L8106_26862 [Lyngbya sp. PCC 8106]
          Length = 309

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 84/305 (27%), Gaps = 56/305 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-----ELWDCVHDPVMPQVL 57
            L++D E           +  Y     + L       + +      L+D +  P +  + 
Sbjct: 22  ILWLDTE-----------VADYKNKPRLSLIQVLTTPNEIKSDHLYLFDVLDQPELTTLF 70

Query: 58  KE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA----RSNG--LPSALK 110
            E  + N  +  V HN+ ++  +L              CTLV+A              LK
Sbjct: 71  IEEIMANPAIEKVFHNANYDLKLLGKK-----QSKNVTCTLVMAKKIPYYLLPVPNYQLK 125

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            +   L   +              K E       R             EY + DV    +
Sbjct: 126 TLATQLGDFTN-----------IDKQEQSSDWGQRPLT------EKQLEYAQMDVVYLAQ 168

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           I         K Q L   D T        D+    T  Q +  +  +LD E+  +   L 
Sbjct: 169 IH----QCLLKLQPLASPDPTTE------DLNKLATRYQEIAHDWKQLDSEITHIQDRLK 218

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
             +   +++      +         +TT  ++    +    +            +     
Sbjct: 219 -QAMKTQQVDQTDSFKLSSSQRKTLKTTFAQLSEFVQTQNLELDFPLTLTQALQKQLGET 277

Query: 291 LNTLV 295
           +  L 
Sbjct: 278 IQQLP 282


>gi|281416299|ref|YP_003347539.1| DNA polymerase [Klebsiella phage KP32]
 gi|262410418|gb|ACY66683.1| DNA polymerase [Klebsiella phage KP32]
          Length = 704

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/472 (10%), Positives = 98/472 (20%), Gaps = 126/472 (26%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHL---EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             +V +    + +   L     +     +         VL   +   P+  +  +     
Sbjct: 330 EHVVFNPSSRDHIALKLKEAGWIPTEFTDKGAPKVDDEVLEHVRVDDPEKQRCIDLIKEY 389

Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSH 336
                            +  +  DG++ G++   GA  TGR +        +P   S   
Sbjct: 390 LMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNPNGA-VTGRATHSFPNLGQVPGVRSPYG 448

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           E                  P                       D +G+E R LA      
Sbjct: 449 EPCRAAFGAEHHLDGLTGLP-----------------WVQAGIDASGLELRCLAHF---- 487

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +  ++ G    V        V         R   K       Y  G +          
Sbjct: 488 --MSKYDGGAYADVILNGDIHTVNQQAAELPTRDNAKTFIYGFLYGAGDEKI-------- 537

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                                          + +KK + +    
Sbjct: 538 ------------------------------------GQIVGAGKERGKELKKKFLENTPA 561

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           ++ L   + Q   ++          K +               +    GR +  R     
Sbjct: 562 IAALREGIQQTLVESSRWVAGEQKVKWKRR------------WIKGLDGRKVHVRSPHA- 608

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI------------ 624
                                   ++Q+    I    ++   +                 
Sbjct: 609 --------------------ALNTLLQSAGALICKLWIVETEELLLKAGLKHGWDGDFAY 648

Query: 625 VLTVHDEIVCET--PDTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673
           +  VHDEI      P+  +         M +    +     L  EG     +
Sbjct: 649 MAWVHDEIQVACRTPEIAQQVIDTAQQAMRNVGEHFKFRCRLDTEGKMGPNW 700


>gi|209551599|ref|YP_002283516.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537355|gb|ACI57290.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 208

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 49/208 (23%), Gaps = 27/208 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++            L   LE+
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIASGQKEAPNLVALLED 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H   F+  VL   F +        CT + +R            +   L   K 
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVTTNP--VFCTKIASRLIR------TYTDRHGL---KD 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L     K +             +       EY   DV     +  +L     ++ 
Sbjct: 123 NLKEMLDVDISKAQQSSDWAAETLSPAQ------LEYAASDVLYLHALRDKLTERLLRDG 176

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211
              +             + L       +
Sbjct: 177 RFDHATACFAFLPTRAKLDLLGWEEADI 204


>gi|22298627|ref|NP_681874.1| putative ribonuclease D [Thermosynechococcus elongatus BP-1]
 gi|22294807|dbj|BAC08636.1| tlr1083 [Thermosynechococcus elongatus BP-1]
          Length = 211

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 34/207 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET         G+    +   + L      +  V +            L++ L
Sbjct: 26  DQLAVDTET--------MGLNIPRD--RLCLVQVCDPEGQVAVVKIGRGQKEAPHLQQLL 75

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA---RSNGLPSALKAVGEA-LK 117
           E+  +T + H + F+   L+    + +      CT + +   R+      LK +    L 
Sbjct: 76  EHPRITKIFHYARFDLATLRYHLGIRVHP--VFCTKIASKIARTYSPRHGLKDLVLDLLG 133

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K  +  +                               Y   DV     + ++L  
Sbjct: 134 VEIDKSAQSSDWGNATA------------------LREDQLRYAANDVRYLIPLRQQLTA 175

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALA 204
           +  +E+    +   ++     VD+ LA
Sbjct: 176 MLKREERFELVQTALSCLPAIVDLDLA 202


>gi|302868656|ref|YP_003837293.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029]
 gi|302571515|gb|ADL47717.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029]
          Length = 552

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/429 (13%), Positives = 99/429 (23%), Gaps = 127/429 (29%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +L   +          +    +L    F   G+ L +      + V        P 
Sbjct: 203 RRLAELQARIADAFGVRQVHADSPAELLR-AFARVGVDLPNTRAWVLRGV------EHPA 255

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
           A  V        R          +A  S GR        G   +GRW+        +P+ 
Sbjct: 256 APLVLEY-KELYRIWTAHGWAWRDAWVSGGRFHPEY-VPGGVVSGRWATRGGGALQIPK- 312

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R  V+A  G   VVAD   +E RVLA +
Sbjct: 313 ------------------------------VIRQAVVADPGWTFVVADAGQLEPRVLAAV 342

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++    A   G+                      RA  KV  L   Y     A     
Sbjct: 343 SEDERLAAAGGAGDLYAALARDAFAG---------DRAKAKVALLGAMYGQTGGA----- 388

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                       +       + +  A  +            +   ++G  C         
Sbjct: 389 -----------AVPALAVLRKNYPTAFGYVEAAARTGEAGGLVRSWLGRTCP-------- 429

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                +                                            P G      D
Sbjct: 430 --PGSAGFAEGEEAM-----------------------------------PDG----GAD 448

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI--LAEGMMNATKAG--YDIVLTV 628
             +  +    +  + TR           ++QA + +        +    AG   ++V   
Sbjct: 449 PHSPSARAARSRGRFTR---------NFVIQATAAEWASTLLATLRTELAGTEAELVFFQ 499

Query: 629 HDEIVCETP 637
           HDE++   P
Sbjct: 500 HDEVMVHCP 508


>gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
 gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
          Length = 380

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 42/163 (25%), Gaps = 16/163 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E          G+  Y E   + L  F        +            L E   
Sbjct: 30  QIAVDTE--------SNGLHAYQE--QICLIQFSVPGADYLVDPLASVN--LSGLNEIFS 77

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLSS 120
           N  +  V H + ++   LK  F           T++ AR  G     L A+ E    ++ 
Sbjct: 78  NPGIEKVFHAAEYDILCLKRDFGFTF--THLFDTMIAARILGRSEVGLAALLEEHFGVTL 135

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            K  +      R                       L  E  + 
Sbjct: 136 DKRYQRANWARRPLPPAMLNYARLDTHYLIDLRNHLAKELAER 178


>gi|47934638|gb|AAT39757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 205

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 69/229 (30%), Gaps = 54/229 (23%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+  D      L +       ++  EL+ +                      V +  
Sbjct: 1   ERNGFMFDYDAGSCLYRRQKERMGEIVTELQEVFPPIVEERWSEKTGKRLKDKVEVFNPA 60

Query: 235 CLEKLKTWLFLETGLHLEDLTET---TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L  +  +  +   +      +  L +   +      +    +   +     +
Sbjct: 61  SRQQIARRLESKGVVWEKRTEKGNIIVDETTLGAYVDVPEAV--LILEYLTLGK-RSAMV 117

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
              ++A  SDGR+ G +   G + TGR +        +P  +                  
Sbjct: 118 KGWLDAYESDGRIHGYVNSNG-TVTGRMTHSNPNMAQIPSGAEY---------------- 160

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                        RSC +  +G+KLV  D +G+E R+LA    +    +
Sbjct: 161 -------------RSCFVVPQGRKLVGVDASGLELRMLAHYMRDDAFTQ 196


>gi|157828459|ref|YP_001494701.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933177|ref|YP_001649966.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
 gi|157800940|gb|ABV76193.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908264|gb|ABY72560.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
          Length = 203

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 58/195 (29%), Gaps = 34/195 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET         G+  + +   + L  F   +    L    +       +K  L +
Sbjct: 20  LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFTNQDYTAPNVKALLLD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H + F+   +K   ++D+      CT + ++          LK +   L    
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLKDLCREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +        N            EY   DV    ++   L+ +  
Sbjct: 124 --------LNINISKQQQSSYWGADNLS------SEQKEYAAKDVLYLHQLKDILQKMLL 169

Query: 181 KEQELWYLDQTINDR 195
           KE   + L Q I   
Sbjct: 170 KENR-YELAQDIFRF 183


>gi|329114438|ref|ZP_08243200.1| Ribonuclease D [Acetobacter pomorum DM001]
 gi|326696514|gb|EGE48193.1| Ribonuclease D [Acetobacter pomorum DM001]
          Length = 256

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 42/187 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC------VHDPVMPQVL 57
           + +D ET         G+  + +   + L      D    L               P  L
Sbjct: 66  VAVDTET--------MGLNPHRD--RLCLVQLSAGDGTAHLVQIIPTSLGGKGYDCP-NL 114

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE 114
           K  + +  +T + H + F+  +L+    + +     +CT + AR          L A+  
Sbjct: 115 KRVMADPSITKIMHFARFDVAILQHALGITVSP--VVCTKIAARLVRTFTDRHGLAALCR 172

Query: 115 A-LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L +   K ++  +  A   K E                      Y   DV     ++ 
Sbjct: 173 DMLGVELSKQQQTSDWGALELKPEQ-------------------LAYAASDVLYLHALWD 213

Query: 174 RLEPLSS 180
           ++  L  
Sbjct: 214 KMSALLD 220


>gi|319403664|emb|CBI77249.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
          Length = 206

 Score = 76.7 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 46/174 (26%), Gaps = 31/174 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L   LE+
Sbjct: 22  IAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADIIQIAKGQNSAPNLVTLLED 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H   F+  +L   F   +      CT + ++                  ++  
Sbjct: 72  KTITKIFHFGRFDLAILAHTFG--VMPDAVFCTKLASKL-----------------TRTY 112

Query: 124 EEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREIFKRL 175
            +   L     +         +       +A      EY   DV     +    
Sbjct: 113 TDRHGLKEICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIF 166


>gi|152968215|ref|YP_001363999.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
 gi|151362732|gb|ABS05735.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216]
          Length = 592

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 68/454 (14%), Positives = 108/454 (23%), Gaps = 144/454 (31%)

Query: 194 DRGYCVDVALAHTLNQIV---------DVERTKLDQELESLTYGLVSSSRCLEKLKTWLF 244
             G  VD A+A  +             +  R++  ++     +      R   ++   L 
Sbjct: 229 RTGLPVDRAVAERIVADAVGPRPGDAGEEARSRAVRDAPVHEHLGRVDLRNPAQVLAALR 288

Query: 245 LETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK-LNTLVEAMNSDGR 303
              G  + D         L   ++  P    +     +A R A       L E + +DGR
Sbjct: 289 G-LGFDVPDTR----AWRLERLREAHPGVAALL-AWRKAERLATTYGYRWLDEHVGADGR 342

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
           LRG      A+     +       NLP                                 
Sbjct: 343 LRGEWSGADAAAGRMTAQAG--LHNLP-------------------------------SE 369

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V A  G  LV ADL  +E RVLA ++G+   + A                    A 
Sbjct: 370 LRPAVAAEPGHVLVRADLGQVEPRVLAAVSGDAGLVAATRD----------DDLYAPVAA 419

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                R   KV  LA  Y   + A                           +  A  + R
Sbjct: 420 ALGVDRPTAKVAVLAAMYGQTSGA----------------AGEALRRMERAYPTALGYLR 463

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
             +    E      + G                       L +  +       A  A + 
Sbjct: 464 AAELAGLEGRDVRTYGGR----------------------LVRISDLAPAEPGAATAARG 501

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R      ++     L                           +        G        
Sbjct: 502 RFARNAVVQGAAAELF--------------------------KAWAAAVRAGLA------ 529

Query: 604 AVSRDILAEGMMNATKAGYDIVLTVHDEIVCETP 637
             +                 IVL +HDE++   P
Sbjct: 530 GSA---------------GRIVLCLHDELLLHVP 548


>gi|218670593|ref|ZP_03520264.1| ribonuclease III protein [Rhizobium etli GR56]
          Length = 208

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 50/212 (23%), Gaps = 35/212 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++            L   LE+
Sbjct: 24  VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALKLS 119
                + H   F+  VL   F +        CT + +R              + E L + 
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLIRTYTDRHGLKDNLKEMLDID 131

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +  A                           EY   DV     +  +L    
Sbjct: 132 ISKTQQSSDWAAETLSPAQ-------------------LEYAASDVLYLHALRDKLTARL 172

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
            ++    +             + L       +
Sbjct: 173 IRDGRFDHATACFEFLPTRAKLDLLGWEEADI 204


>gi|15892510|ref|NP_360224.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|34580497|ref|ZP_00141977.1| ribonuclease D [Rickettsia sibirica 246]
 gi|229586700|ref|YP_002845201.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238650888|ref|YP_002916744.1| ribonuclease D [Rickettsia peacockii str. Rustic]
 gi|15619670|gb|AAL03125.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|28261882|gb|EAA25386.1| ribonuclease D [Rickettsia sibirica 246]
 gi|228021750|gb|ACP53458.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|238624986|gb|ACR47692.1| ribonuclease D [Rickettsia peacockii str. Rustic]
          Length = 203

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 58/195 (29%), Gaps = 34/195 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET         G+  + +   + L  F   +    L    +       +K  L +
Sbjct: 20  LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFTNQDYTAPNVKALLLD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H + F+   +K   ++D+      CT + ++          LK +   L    
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLKDLCREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +        N            EY   DV    ++   L+ +  
Sbjct: 124 --------LNINISKQQQSSYWGADNLS------SEQKEYAAKDVLYLHQLKDILQKMLL 169

Query: 181 KEQELWYLDQTINDR 195
           KE   + L Q I   
Sbjct: 170 KENR-YELAQDIFRF 183


>gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
 gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831]
          Length = 207

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 35/182 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID ET         G+  + +   + +      D   ++         P VLK  L
Sbjct: 21  RAVAIDTET--------LGLNPHRD--RLCVVQLSTGDGTADVVQIPQAGPEPVVLKRVL 70

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-K 117
            +  +  + H + F+  VL       +      CT + ++          LK V   L  
Sbjct: 71  ADPGILKIFHFARFDVAVLYRALG--VMPSPVYCTKIASKLARTYTDRHGLKDVVRELVG 128

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K ++  +                      +        Y   DV       +RL+ 
Sbjct: 129 VDLSKQQQSSDW-------------GAETLSQAQLD------YAASDVLHLHAARERLDA 169

Query: 178 LS 179
           + 
Sbjct: 170 ML 171


>gi|218661189|ref|ZP_03517119.1| ribonuclease III protein [Rhizobium etli IE4771]
          Length = 208

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 49/208 (23%), Gaps = 27/208 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++            L   LE+
Sbjct: 24  VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H   F+  VL   F +        CT + +R            +   L   K 
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLIR------TYTDRHGL---KD 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L     K +             +       EY   DV     +  +L     ++ 
Sbjct: 123 NLKEMLDIDISKTQQSSDWAAETLSPAQ------LEYAASDVLYLHALRDKLTARLIRDG 176

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211
              +             + L       +
Sbjct: 177 RFDHATACFEFLPTRAKLDLLGWEEADI 204


>gi|222147114|ref|YP_002548071.1| ribonuclease D [Agrobacterium vitis S4]
 gi|221734104|gb|ACM35067.1| ribonuclease D [Agrobacterium vitis S4]
          Length = 208

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 48/203 (23%), Gaps = 27/203 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID ET   I               + +      D   ++            L   L
Sbjct: 22  RAIAIDTETLGLIP----------RRDRLCVVQLSPGDGTADVIRIAPGQRQAPNLTALL 71

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+     + H   F+  VL   F +        CT + +R                L   
Sbjct: 72  EDPTREKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRL---SRTYTD---RHGL--- 120

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    + L     K +             +       EY   DV     +  +L     +
Sbjct: 121 KDNLKEMLDVDVSKAQQSSDWAAETLSPAQ------LEYAASDVLYLHALRDKLTARLVR 174

Query: 182 EQELWYLDQTINDRGYCVDVALA 204
           +  + +             + L 
Sbjct: 175 DGRMDHATACFEFLPTRAKLDLL 197


>gi|315504872|ref|YP_004083759.1| DNA-directed DNA polymerase [Micromonospora sp. L5]
 gi|315411491|gb|ADU09608.1| DNA-directed DNA polymerase [Micromonospora sp. L5]
          Length = 552

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/429 (13%), Positives = 99/429 (23%), Gaps = 127/429 (29%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +L   +          +    +L    F   G+ L +      + V        P 
Sbjct: 203 RRLAELQARIADAFGVRQVHADSPAELLR-AFARAGVDLPNTRAWVLRGV------EHPA 255

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
           A  V        R          +A  S GR        G   +GRW+        +P+ 
Sbjct: 256 APLVLEY-KELYRIWTAHGWAWRDAWVSGGRFHPEY-VPGGVVSGRWATRGGGALQIPK- 312

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R  V+A  G   VVAD   +E RVLA +
Sbjct: 313 ------------------------------VIRQAVVADPGWTFVVADAGQLEPRVLAAV 342

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + ++    A   G+                      RA  KV  L   Y     A     
Sbjct: 343 SEDERLAAAGGAGDLYAALARDAFAG---------DRAKAKVALLGAMYGQTGGA----- 388

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                       +       + +  A  +            +   ++G  C         
Sbjct: 389 -----------AVPALAVLRKNYPTAFGYVEAAARTGEAGGLVRSWLGRTCP-------- 429

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                +                                            P G      D
Sbjct: 430 --PGSAGFAEGEEAM-----------------------------------PDG----GAD 448

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI--LAEGMMNATKAG--YDIVLTV 628
             +  +    +  + TR           ++QA + +        +    AG   ++V   
Sbjct: 449 PHSPSARAARSRGRFTR---------NFVIQATAAEWASTLLATLRTELAGTEAELVFFQ 499

Query: 629 HDEIVCETP 637
           HDE++   P
Sbjct: 500 HDEVMVHCP 508


>gi|58040278|ref|YP_192242.1| ribonuclease D [Gluconobacter oxydans 621H]
 gi|58002692|gb|AAW61586.1| Ribonuclease D [Gluconobacter oxydans 621H]
          Length = 214

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 61/208 (29%), Gaps = 42/208 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC------VHDPVMPQVL 57
           + ID ET         G+  + +   + L      D    L               P  L
Sbjct: 24  VAIDTET--------MGLNPHRD--RLCLVQLSAGDGEAHLVQIKPVSMGGRGYDCP-NL 72

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE 114
           K  L +  VT + H + F+  VL+  FN+ IP    ICT + AR          L  +  
Sbjct: 73  KALLTDDSVTKLMHFARFDVAVLQNAFNITIP--SVICTKIAARLVYTFTDRHGLAYLCR 130

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L            L     K +       +     +        Y   DV     ++ +
Sbjct: 131 DL------------LGVEISKHQQSSDWGAQTLTPDQ------LRYAASDVLYLHALWDK 172

Query: 175 LEPLS--SKEQELWYLDQTINDRGYCVD 200
           LE +      ++L             +D
Sbjct: 173 LEAMLIRENRRDLAQACYDFLPARCRLD 200


>gi|296130861|ref|YP_003638111.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109]
 gi|296022676|gb|ADG75912.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109]
          Length = 570

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 69/501 (13%), Positives = 116/501 (23%), Gaps = 146/501 (29%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCL 236
            +   +   G   D      L   +               +L   +  L      +    
Sbjct: 181 LVAAEMQHDGLPWDPVRHDELLTDLLGPRPVGGGRPRRLEELVTTIRELLADPHLNPDSQ 240

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
             L   L    G  L   ++   + +        P    +     + SR         ++
Sbjct: 241 PHLLAAL-RRQGFSLSSTSKWEVREL------DHPVVAPLLEY-KKLSRLLSANGWAWLD 292

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
           +   DGR R     +G   TGRW+        LP                          
Sbjct: 293 SWVRDGRFRPAY-VVGGVVTGRWATDGGGALQLP-------------------------- 325

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  +R+   A +G +LVVAD A +E RVLA M+G++    A            +  
Sbjct: 326 -----ASLRAAARADDGWRLVVADAAQLEPRVLAAMSGDRAMADAARG---------SDL 371

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           +       T   R   K   L   Y                     +  +        + 
Sbjct: 372 YQRIADAGTVPTRTDAKYALLGAIYGATTG----------------SAGMLMPRLARAYP 415

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
            A                   ++G          R      +   + L  A  +  +   
Sbjct: 416 QAVALVEAAARAGERGETVSTWLG----------RTSPPASAAFLDRLGAAGAEGADPDD 465

Query: 537 AIIARKRR------DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
              AR+R           V         +  L S R    R++G+ R             
Sbjct: 466 VRDARRRARDRGRFTRNFVVQGTAAEWALCWLASLRRR-LREIGDGR------------- 511

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                                            +V  +HDE+V  +P  D    +     
Sbjct: 512 -------------------------------ARLVFFLHDEVVVHSPAQDADAVATAVRE 540

Query: 651 MTS----------NPSWAKGL 661
                           +A  L
Sbjct: 541 AAEEAGRLLFGAAPVEFALDL 561


>gi|13472866|ref|NP_104433.1| hypothetical protein mll3296 [Mesorhizobium loti MAFF303099]
 gi|14023613|dbj|BAB50219.1| mll3296 [Mesorhizobium loti MAFF303099]
          Length = 206

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 56/204 (27%), Gaps = 35/204 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + L      D   ++            L   L N
Sbjct: 22  VAIDTET--------LGLNPHRD--RLCLVQISPGDGSADVIQIAPGQKKAPNLVSLLRN 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119
             VT + H   F+  VL   F   +      CT + +R          LK +  E L + 
Sbjct: 72  RSVTKLFHFGRFDLAVLYNAFG--VMPEPVFCTKIASRLTRTYTDRHGLKDICFELLGVG 129

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +  A     E                     EY   DV     +   L    
Sbjct: 130 LSKAQQSSDWAAETLSPEQ-------------------LEYAASDVLYLHRLRDVLAGRL 170

Query: 180 SKEQELWYLDQTINDRGYCVDVAL 203
           ++E      D           + L
Sbjct: 171 AREGRTKEADACFRFLPTRAKLDL 194


>gi|319406582|emb|CBI80224.1| Ribonuclease D [Bartonella sp. 1-1C]
          Length = 206

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 46/174 (26%), Gaps = 31/174 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L   LE+
Sbjct: 22  IAIDTET--------LGLQPHRD--RLCVVQLSPGDGTADIIQIAKGQNSAPNLVTLLED 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H   F+  +L   F   +      CT + ++                  ++  
Sbjct: 72  KTITKIFHFGRFDLAILAHTFG--VMPDAVFCTKLASKL-----------------TRTY 112

Query: 124 EEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREIFKRL 175
            +   L     +         +       +A      EY   DV     +    
Sbjct: 113 TDRHGLKEICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIF 166


>gi|225626345|ref|YP_002727841.1| DNA polymerase A [Pseudomonas phage phikF77]
 gi|225594854|emb|CAX63139.1| DNA polymerase A [Pseudomonas phage phikF77]
          Length = 808

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/428 (9%), Positives = 95/428 (22%), Gaps = 83/428 (19%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL--------------NTLVEAMNSDG 302
           +T    L + +K   +A ++        +                      +++ ++ DG
Sbjct: 400 STSGDALKALEKQGFEAAKLLMRLAELHKDNSSFYITHTYNKDGTIKDTKGMLQYVDDDG 459

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
            +  +L    A+ T R S      Q LP       E                        
Sbjct: 460 IIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDPEA---------------------GS 497

Query: 363 CVRSCVIASEGK--KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
            V+   ++  G    +   D   +E  +LA ++ ++  L     G D++           
Sbjct: 498 RVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLLAKLMAGTDMH----------- 546

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                     +                F        +  +             +    + 
Sbjct: 547 -------LYRLAGKHN-------NWNGF-DYDQLVAIKKDPNHPWHGRMMQARKNIKPKA 591

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT----IENGK 536
           F      +    A          +                   +  + E T     +   
Sbjct: 592 FSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIAFRQIVRDSAEATSLVMYKAED 651

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            + A    ++      +         P G    +R           T             
Sbjct: 652 QMPAGAFSEMGPDGNWRQYRRGFWQAPGGTCYSFRQQERWDKEQRKTVMDFKDTQI---- 707

Query: 597 LTENIVQAVSRDILAEGMMNA-----TKAGY----DIVLTVHDEIVCETPDTDEFNASM- 646
                 Q  +  ++   +         + G+     ++  VHD +  +         +  
Sbjct: 708 -ANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLINNVHDAVYTDCHKDTAAEVNNG 766

Query: 647 LYHLMTSN 654
           +  +M   
Sbjct: 767 VRDIMADA 774



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 70/280 (25%), Gaps = 56/280 (20%)

Query: 1   MATL-FIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVL 57
           M T+  +D ET S       G      D    +++  +  D       D      +    
Sbjct: 1   MTTIRILDLETES---YEHKGRKASPFDPRNYIVMAGWRDD------VDGKVGQKVEHRF 51

Query: 58  K--EALENTDVTI---------VAHNSYFERTVL-----KACFNLDIPIHRWICTLVLAR 101
           +     E+ +            VAHN+ FE                    R  CT     
Sbjct: 52  RSRAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEY 111

Query: 102 SNG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                  L  AL  +       + K++  K L                     ++    +
Sbjct: 112 LLSHQTWLYPALDELAPKYG-GTHKVDGIKMLWD----------QGVLTSEMDQDLLSEY 160

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---------NDRGYCVDVALAHTLN 208
                GD+  T  +F                 +              G  VD+ +A   +
Sbjct: 161 LSGPCGDIENTALVFYGQLMKLQARGMWAGYLERCEALIGFSAMECAGLKVDLEVAKVNH 220

Query: 209 QIVDVERTKLDQELESLT----YGLVSSSRCLEKLKTWLF 244
                E   ++ EL+ L              L  +  WL+
Sbjct: 221 AKQLEEVAGIEAELKKLMPDFPEYFEFKYTSLYHMSAWLY 260


>gi|209524209|ref|ZP_03272759.1| 3'-5' exonuclease [Arthrospira maxima CS-328]
 gi|209495300|gb|EDZ95605.1| 3'-5' exonuclease [Arthrospira maxima CS-328]
          Length = 207

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 50/186 (26%), Gaps = 26/186 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET         G+    +   + L         V              LK  LE 
Sbjct: 25  LAIDTET--------MGLLPGRD--RLCLVQICDPKGQVVAIRIERGQREAPNLKTLLET 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            ++  V H + F+   L+    +++      CT + ++          +           
Sbjct: 75  ANILKVFHFARFDVATLRHNLGIEVNP--VFCTKIASK----------LARTY----TGK 118

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+LI      E  +     +  N          Y   DV        +L  +  +E+
Sbjct: 119 HGLKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLIQMLKREE 178

Query: 184 ELWYLD 189
                 
Sbjct: 179 RWDLAL 184


>gi|67459045|ref|YP_246669.1| ribonuclease D [Rickettsia felis URRWXCal2]
 gi|67004578|gb|AAY61504.1| Ribonuclease D [Rickettsia felis URRWXCal2]
          Length = 203

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 33/179 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + L  F   +    L   V+       LK  L +
Sbjct: 20  IAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFVNQDYSAPNLKALLLD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H + F+   +K   ++D+      CT + ++          LK +   L    
Sbjct: 70  KTRCKIFHFARFDLAAIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLKDLCREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                   L     K +        N            EY   DV    ++   L+ + 
Sbjct: 124 --------LSINISKQQQSSYWGTDNLS------SEQKEYAAKDVLYLHQLKDILQKML 168


>gi|239787681|emb|CAX84189.1| 3\'-5\' exonuclease family protein [uncultured bacterium]
          Length = 202

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 55/212 (25%), Gaps = 34/212 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET     +             + L      D    L         P  LK  L 
Sbjct: 19  VIAIDTETMGLNPMRD----------RLCLVQLSSGDGDAHLVHFQGRYEAP-RLKALLA 67

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEALKLS 119
           + +   + H + F+  +L     +        CT + +R    N     LK +   L   
Sbjct: 68  DHNRLKLFHYARFDIAMLARWLGVT--CTPVYCTKIASRLTRTNTDKHGLKDLCRDL--- 122

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                 G +L  +    +                      Y   DV     +  +L+ L 
Sbjct: 123 -----LGIDLSKQQQTSDWGSGDLT----------AEQQAYAASDVLHLHALKAKLDALL 167

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
            +E      D   +       + L     + +
Sbjct: 168 KREGRGALADSCYSFLPTRAALDLLGWGEEDI 199


>gi|328545553|ref|YP_004305662.1| 3'-5' exonuclease [polymorphum gilvum SL003B-26A1]
 gi|326415294|gb|ADZ72357.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1]
          Length = 206

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 58/208 (27%), Gaps = 27/208 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+  + +   + +      D   ++            L   L +
Sbjct: 22  VAVDTET--------LGLNPHRD--RLCVVQLSPGDGTADVVQIARGQRAAPNLARLLTD 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H + F+  VL+    +++      CT + ++            +   L   K 
Sbjct: 72  PAKMKIFHFARFDLAVLRHNLGIEVAP--VWCTKIASKLVR------TYTDRHGL---KD 120

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L     K +           + + A      Y   DV     + ++L  +  +E+
Sbjct: 121 ITRELLGVDLSKQQQSSDWAAETLTDAQLA------YAASDVLHLHALREKLAAMLEREE 174

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211
                            + L     Q +
Sbjct: 175 RTALARACYEFLPTRAALDLMGWEEQDI 202


>gi|75674370|ref|YP_316791.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255]
 gi|74419240|gb|ABA03439.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255]
          Length = 206

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 52/197 (26%), Gaps = 33/197 (16%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            ID ET         G+  + +   + +      D   ++            L + L++ 
Sbjct: 23  AIDTET--------MGLKPHRD--RLCVVQMSPGDGSADVIQIARGQRDAPNLIKLLKDP 72

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQ 121
            +  + H + F+   L   F   +      CT + +R          LK +   L     
Sbjct: 73  AIVKIFHFARFDLAALYNAFG--VMPRPVYCTKIASRLIRTYTDRHGLKDLVREL----- 125

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L     K +           + + A      Y   DV     +  +LE   ++
Sbjct: 126 -------LSIDLSKQQQSSDWGSPTLSDAQLA------YAASDVLHLHALRDKLEATLAR 172

Query: 182 EQELWYLDQTINDRGYC 198
           E                
Sbjct: 173 EDRSALAQACFEFLPSR 189


>gi|86355756|ref|YP_467648.1| RNAse D protein [Rhizobium etli CFN 42]
 gi|86279858|gb|ABC88921.1| RNAse D protein [Rhizobium etli CFN 42]
          Length = 208

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 49/208 (23%), Gaps = 27/208 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++            L   LE+
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADIIRIAAGQKAAPNLVALLED 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H   F+  VL   F +        CT + +R            +   L   K 
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVTTNP--VFCTKIASRLCR------TYTDRHGL---KD 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L     K +             +       EY   DV     +  +L     ++ 
Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAETLSPAQ------LEYAASDVLYLHALRDKLTARLIRDG 176

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211
              +             + L       +
Sbjct: 177 RFDHATACFAFLPTRAKLDLLGWEEADI 204


>gi|207109828|ref|ZP_03243990.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 152

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 48/185 (25%), Gaps = 41/185 (22%)

Query: 452 ASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWR 511
                L  +                 + NF         + +          +   +A+ 
Sbjct: 4   GRDIHLETSKALFGGDLAKEKRSIAKSINFGLVYGMGSKKLSETLNISLNEAKSYIEAYF 63

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           ++   + +  N + +   +T +                               GR  V+ 
Sbjct: 64  KRFPSIKDYLNRMKEEILKTSK--------------------------AFTLLGRYRVF- 96

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA-----GYDIVL 626
           D      Y+            Y  +    I Q  + D+L  GM+  ++         ++L
Sbjct: 97  DFTGANDYIKGN---------YLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLL 147

Query: 627 TVHDE 631
            VHDE
Sbjct: 148 QVHDE 152



 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            + K++R+I K +   L Y  G+K   +      LN++         +  + +   +++ 
Sbjct: 19  DLAKEKRSIAKSINFGLVYGMGSKKLSET-----LNISLNEAKSYIEAYFKRFPSIKDYL 73

Query: 483 RWMQENHPEHAIEDLFIGT 501
             M+E   + +     +G 
Sbjct: 74  NRMKEEILKTSKAFTLLGR 92


>gi|75908135|ref|YP_322431.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
 gi|75701860|gb|ABA21536.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
          Length = 209

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 26/202 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET   +           +   + L      +  V              LK+ LE 
Sbjct: 27  IAVDTETMGLLP----------QRDRLCLIQLCNPEGKVTAIRIARGQTAAPNLKKLLEA 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           T+V  V H + F+   L+   ++ +      CT + ++     +    +           
Sbjct: 77  TNVLKVFHFARFDVATLRHHLDIHVQP--IFCTKIASKLARTYTNRHGL----------- 123

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+L+    + E  +     +  N          Y   DV       ++L  +  +E+
Sbjct: 124 ---KDLVYELEQVELDKSAQSSDWGNAANLTDAQLSYAANDVRYLLSAQQKLVAMLKREE 180

Query: 184 ELWYLDQTINDRGYCVDVALAH 205
                 Q        V + L  
Sbjct: 181 RWELAQQCFQVLPTIVSLDLLQ 202


>gi|325842732|ref|ZP_08167767.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
 gi|325489532|gb|EGC91897.1| 3'-5' exonuclease [Turicibacter sp. HGF1]
          Length = 232

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 56/194 (28%), Gaps = 39/194 (20%)

Query: 2   ATLFIDFETRSPIDLTKCG--ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
             + +D ET     L      I  Y+ED   +                       + +K 
Sbjct: 63  KIIGVDIETTGLDFLEDSIRLIAVYSEDFEYVG-------------------EDLEAVKT 103

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L +  V  V H+S F+   LK      I +  +  T ++ +         ++       
Sbjct: 104 LLTDPSVLKVFHHSQFDVCFLKKA---GIDVCTFTDTFIMNQILNNLPVFDSLSR----- 155

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K+  GK L              +      +E +     YC  D   T E+++ +  L 
Sbjct: 156 LAKVYLGKSLDKSLQH------ADNWQSDLTQEHYA----YCLDDAKTTYELYQHMFDLI 205

Query: 180 SKEQELWYLDQTIN 193
                     + I 
Sbjct: 206 INRYLYPRYRREIE 219


>gi|91974656|ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
 gi|91681112|gb|ABE37414.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5]
          Length = 204

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 58/208 (27%), Gaps = 35/208 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            LK+ L +
Sbjct: 20  VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGHSDAPNLKKLLGD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             V  + H + F+   L   F   +      CT + +R          LK +   L    
Sbjct: 70  PTVVKIFHFARFDLAALYNAFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +           + + A      Y   DV     + ++L+ + +
Sbjct: 124 --------LNVDLSKQQQSSDWGAETLSDAQLA------YAASDVLHLHGLREKLDAMLA 169

Query: 181 KEQELWYLDQTIND--RGYCVDVALAHT 206
           +E                  +D+     
Sbjct: 170 RENRTDLAQACFGFLPHRSRLDLDGWSE 197


>gi|213423791|ref|ZP_03356771.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 304

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 20/83 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD----------PVMP 54
             D ET S  ++             ++  +F  +          HD              
Sbjct: 232 AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 281

Query: 55  QVLKEALENTDVTIVAHNSYFER 77
           ++LK  LE+  V  V  N  ++R
Sbjct: 282 ELLKPLLEDEKVRKVGQNLKYDR 304


>gi|163867544|ref|YP_001608743.1| hypothetical protein Btr_0277 [Bartonella tribocorum CIP 105476]
 gi|161017190|emb|CAK00748.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
          Length = 206

 Score = 75.2 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 46/170 (27%), Gaps = 31/170 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L + LE+
Sbjct: 22  IAIDTET--------LGLQPHRD--RLCVVQISPGDGTADIIQIAKGQKNAPNLVKLLED 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             VT + H   F+  +L   F   +      CT + ++                  ++  
Sbjct: 72  NAVTKIFHFGRFDLAILAHTFG--VMPEAVFCTKIASKL-----------------TRTY 112

Query: 124 EEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREI 171
            +   L     +         +       E       EY   DV     +
Sbjct: 113 TDRHGLKEICNELLNVNISKQQQSSDWAAETLSQAQIEYAASDVLYLHRL 162


>gi|27476023|ref|NP_775225.1| DNA polymerase1 [Pseudomonas phage PaP3]
 gi|27414453|gb|AAL85539.1| DNA polymerase1 [Pseudomonas phage PaP3]
          Length = 545

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 58/445 (13%), Positives = 112/445 (25%), Gaps = 113/445 (25%)

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
           L    +T  T    +  +         V+ +R          L  LVE +  +GRL G+ 
Sbjct: 190 LTTPKMT-ETSMDTVQGDLGKLVMQRMVWAHRRSL-------LQGLVEQVKPNGRLEGSA 241

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
               A+ TGR    V    N+P                                 +R   
Sbjct: 242 NPC-ATPTGRMRHRVV--VNIP------------------------AARSPFGPEIRGLF 274

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
                                 W      +          +              V K +
Sbjct: 275 --------------QGTPNAGEWKWTVLRRDIGENERVRPHTNIVEVLKGGKWKTVGKYR 320

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA---------HLVKTNSAPEEWEDAE 479
             + +   + +GY G     + +AS  G    T           + +       +     
Sbjct: 321 VYVPENQLIFVGYDGAGLELRMLASYIGDPDYTREVVDGDVHTANQIAAGLPTRDDAKTF 380

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
            +         +             R+++ + + +  +++L   + Q  E+         
Sbjct: 381 IYAFIYGAGDAKIGQIIGGTRADGARLREQFLKANPELAKLIERVKQEAER--------- 431

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                               L+   GR L  R   +    ++              K   
Sbjct: 432 ------------------GYLVGLDGRKLTMRRSESGEVMVH--------------KALN 459

Query: 600 NIVQAVSRDILAEGMM----NATKAGYDI--VLTVHDEIVCETPDTDEFNASMLYHLMTS 653
            ++QA    ++   M+       +AG     VL +HDE   E    D    + L   M +
Sbjct: 460 TLLQAAGAIVMKWAMVILDEKVRRAGLKAWKVLDIHDEGQWECHPED---LATLRGFMET 516

Query: 654 NPSWAKGL-----PLKAEGYESKRY 673
               A  +     PL ++    + +
Sbjct: 517 CVKEAGEILGCNCPLASDSIAGRSW 541


>gi|186684292|ref|YP_001867488.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
 gi|186466744|gb|ACC82545.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
          Length = 209

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 60/202 (29%), Gaps = 26/202 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+    +   + L      +  V +            LK+  E 
Sbjct: 27  IAVDTET--------MGLLPQRD--RLCLVQLCNLEGKVTVIRIAKGQTEAPNLKKLFEA 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            +V  V H + F+   L+A   + +      CT + ++     +    +           
Sbjct: 77  ANVVKVFHFARFDIATLRANLGIQVSP--VFCTKIASKLARTYTNRHGL----------- 123

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+++    K E  +     +  N          Y   DV     + ++L  +  +E+
Sbjct: 124 ---KDVVQELEKVELDKSSQSSDWGNAVSLSEAQLSYAANDVRYLLSVQQKLTEMLKREE 180

Query: 184 ELWYLDQTINDRGYCVDVALAH 205
                 +        V + L  
Sbjct: 181 RWKIAQECFEFLPTIVSLDLLQ 202


>gi|182437857|ref|YP_001825576.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466373|dbj|BAG20893.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 558

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 106/402 (26%), Gaps = 115/402 (28%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F   G+ ++       + +        P    +     +  R       + ++    +GR
Sbjct: 234 FARAGIPVKSTRRWELEEL------DHPAVEPLIAY-KKLYRIWTAHGWSWLQDWVREGR 286

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G + +GRW+        +P+                                
Sbjct: 287 FRPEY-QPGGTVSGRWTTNGGGALQIPK-------------------------------V 314

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G +LVVAD   +E RVLA ++ ++  ++      DLY             +
Sbjct: 315 IRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHDGDLYKALS--------DR 366

Query: 424 VTKDQRAIGKVMELALGYQGGAK-AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                R   K+  L   Y   +    + +A+                     +  A  + 
Sbjct: 367 AFSGDREHAKLAMLGAIYGQTSGDGLKNLAAL-----------------RRRFPLAVAYV 409

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                   E  +   ++G        A + + + + +              +G    AR 
Sbjct: 410 DDAARAGEEGRVVRTWLGRTSPPAASAGQDEEAGLPQ----EDPEGSGGAPDGGPARARG 465

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           R     V      +  +LML + R  ++                                
Sbjct: 466 RFTRNFVVQGSAADWALLMLAALRRTIFE------------------------------- 494

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
           Q +                  +V   HDE++   P  +    
Sbjct: 495 QGL---------------RAQLVFFQHDEVIVHCPAEESAAV 521


>gi|255595591|ref|XP_002536350.1| DNA polymerase I, putative [Ricinus communis]
 gi|223520014|gb|EEF26033.1| DNA polymerase I, putative [Ricinus communis]
          Length = 547

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 74/581 (12%), Positives = 138/581 (23%), Gaps = 132/581 (22%)

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL---------------TYGLV 230
           W + Q     G       A         +  +   +L  +                    
Sbjct: 7   WDIVQMRET-GMPWSQEEAENYVLAQWAKVAEHAAKLIEMEPSLAPFSAALSNPEAGIKA 65

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN-KKLTPQAIQVFNNRMRASRSAVL 289
                + +  +   +E  +  +       ++ L      +   A   F   +  +R+   
Sbjct: 66  DLKAAIGQAFSNRGIELQMTEKSGAFKIGEKDLRRVKAAVVEDAKPFFEEWVALNRAK-- 123

Query: 290 KLNTLVEAMNS------DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           K   +   ++       DGRL           TGR S      Q  PR            
Sbjct: 124 KAGGMAREVSKYASRSYDGRLHP--NTGHGPVTGRLSSSEPNCQQFPRD----------- 170

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGE------QW 397
                                R+ V +  G K+V AD + ++ RV A  A          
Sbjct: 171 ------------------PGFRAIVRSRPGFKIVSADYSALDMRVGAACAIRAQRQILDA 212

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
            +       D+Y+               + Q A               KA + +A+  G 
Sbjct: 213 YMDERAVPHDVYLCIARVIEGRITLDNARVQEANANRAFD------EWKAERDVATAGGK 266

Query: 458 NLNTFAHLVKTNSAPEEW-EDAENFCRWMQENHPEHAIEDLFIGTACERV----KKAW-- 510
           +       V    A        +     +++        +         +       W  
Sbjct: 267 DAAKRYWEVYRQRARTRLLAGFQRCLAEVRQRADAAGTAEWGSLRDAFSIDGMDIHTWTA 326

Query: 511 ---RQKHSR--------------VSELWNEL------------------------HQAFE 529
                 +                + +   EL                          A +
Sbjct: 327 LDMFGHNPGTLFAGLQGEEVAAALKKWKKELGGDRQTGKVGNLSLLYAMQAFGLQEAAAK 386

Query: 530 QT-IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV----GNNRSYLNTTT 584
              I       +  R      Y++ D  +    L     +   D        +  +    
Sbjct: 387 NYNIHWTLEEASDVRSKWLAAYVEVDLWHKWTELNPKEEVYIPDPDRGGKFGKKQVYAAY 446

Query: 585 RQLTREYTYG---GKLTENIVQAVSRDILAEGMMNATKAGYD---IVLTVHDEIVCETPD 638
               R   Y            Q+   DIL   M    +       IV  VHDE++ E PD
Sbjct: 447 TLGERL-IYAFGLNAALSYEDQSTGADILGLVMQEFRQHPGVFKCIVNQVHDEVLFEIPD 505

Query: 639 TDEFNA-SMLYHLMTSNPSWAK---GLPLKAEGYESKRYRK 675
                  +++  +MT   +      G+    E   ++ + K
Sbjct: 506 DKVDEYNAVISRVMTDAAAHYLSPYGVKADCEPETAEFWPK 546


>gi|254718341|ref|ZP_05180152.1| hypothetical protein Bru83_02133 [Brucella sp. 83/13]
 gi|265983300|ref|ZP_06096035.1| 3'-5' exonuclease [Brucella sp. 83/13]
 gi|306839563|ref|ZP_07472369.1| 3'-5' exonuclease [Brucella sp. NF 2653]
 gi|264661892|gb|EEZ32153.1| 3'-5' exonuclease [Brucella sp. 83/13]
 gi|306405349|gb|EFM61622.1| 3'-5' exonuclease [Brucella sp. NF 2653]
          Length = 205

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 48/179 (26%), Gaps = 31/179 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L + L++
Sbjct: 21  VAIDTET--------LGLNPHRD--RLCMVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H   F+  VL   F          CT + ++                  ++  
Sbjct: 71  RSITKIFHFGRFDLAVLANAFG--TMPQPVFCTKIASKL-----------------TRTY 111

Query: 124 EEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            +   L     +         +   +       +   EY   DV     +   LE    
Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLE 170


>gi|289178750|gb|ADC85996.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 672

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 72/241 (29%), Gaps = 15/241 (6%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           D    + D  HD      L+  L+    T+  H       +L    NL +P+     T +
Sbjct: 424 DGHAVVVD-PHDEQYHMALQRILDTYAATLSVHGYKEHLHMLG-AVNLRLPMV-LFDTNL 480

Query: 99  LARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
                       +L+   +       +     E        +      DR    +     
Sbjct: 481 AGYLIDPDFQGGSLQDCADHFLHRHAEEVTETEQGTLDIGMDDERAERDRKVVRNAAIVS 540

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           L        +        +   L   E         +   G  VD A    L ++   E 
Sbjct: 541 LLARTLARQLEQ----RCQYSLLRDIELPTSVALFHMEHTGASVDRARLDELLEMFTDES 596

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE----TTCQRVLSSNKKLTP 271
            +++Q         V + +  ++L   LF E GL+    T+    +T ++ L++    + 
Sbjct: 597 NRMEQICYEAAGHEV-NLQSPKQLGVVLFEEMGLNPTKKTKRGSYSTNRKALTTLYATSE 655

Query: 272 Q 272
           +
Sbjct: 656 E 656


>gi|225626350|ref|YP_002727846.1| hypothetical protein PPphikF77_gp27 [Pseudomonas phage phikF77]
 gi|225594859|emb|CAX63144.1| hypothetical protein [Pseudomonas phage phikF77]
          Length = 348

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 2   ATLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDP--- 51
             L +D ET         +     G+ +   D  ++ F   +     V   DC  DP   
Sbjct: 94  KVLSLDIETSPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWMHSDEVIYMDCQGDPLDD 153

Query: 52  -VMPQVLKEALENTDVTIVAHNSY-FER-TVLKACFNLDIPI---HRWICTLVLARSNGL 105
             +   L + L+  D+ IV  N   F+   +    F   +P     + I TL++A+    
Sbjct: 154 MHLLVALHKLLDEADIIIV-QNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAK---- 208

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                     L+  + K    K    R         L+     ++ EAW     Y   DV
Sbjct: 209 -QQFAFTSRKLEYMTHKACTIK---KRLHGKFPGFDLWAACLQDNPEAWEEMRLYNIDDV 264

Query: 166 TVTREIFKRLEPL 178
               E++  + P 
Sbjct: 265 RSMEELYILMRPW 277


>gi|302840030|ref|XP_002951571.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f.
           nagariensis]
 gi|300263180|gb|EFJ47382.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f.
           nagariensis]
          Length = 1758

 Score = 74.8 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 65/247 (26%), Gaps = 64/247 (25%)

Query: 426 KDQRAIGKVMELALGYQGG------AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
           K+   +G        Y          K  +      G        +    ++        
Sbjct: 7   KEAFELGGDFHSRTAYGMYEYIQEAVKNGECYLEWEGQGEPDKPLVKDKYASERRKAKVL 66

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
           NF     +     A++        +     W        + W E                
Sbjct: 67  NFSIAYGKTAHGLAVDFKTTKEEAQETVDKWYS------DRWEE---------------- 104

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                               +    GR+    ++ +    L+  +    R          
Sbjct: 105 ------------------FKVRTLLGRTRPLPNISSPDFRLSGHSN---RAAINTP---- 139

Query: 600 NIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLY-HLMT 652
             +Q  + D+ A  M+   K+      G+ +++ +HDE++ E P     +A  L   LM 
Sbjct: 140 --IQGSAADVAAAAMVAIHKSEALRATGFKLLMQIHDEVILEGPRDRSEDAKRLVMELMA 197

Query: 653 SNPSWAK 659
           +   WA+
Sbjct: 198 NP--WAE 202


>gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1417

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/330 (11%), Positives = 84/330 (25%), Gaps = 85/330 (25%)

Query: 353  DPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              +  +     +R   ++  G+K   V  D + +E  VLA + G+   +     G D ++
Sbjct: 1100 CQNIPKDDKSPIRRLFVSRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFHI 1159

Query: 411  TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +    +   ++ K             GY+ G   + ++                   
Sbjct: 1160 KRASFFSGLPYDEIYK-------------GYKRGIPEYVQL------------------- 1187

Query: 471  APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                     +F R      P             E   +   +++  + +    +     +
Sbjct: 1188 --RRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLEASIRKEEEEYPGIMQFHRLVRTVALR 1245

Query: 531  TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                G                        + LP+G  + +               +    
Sbjct: 1246 AENPGLPTHFV------------------VELPTGIRMSF---------------KTRDV 1272

Query: 591  YTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDIVLTVHDEIVCETPDTD 640
                  +    +Q    + LA+ M+          +       +V  VHD +  +     
Sbjct: 1273 VLNLPPVKNYPIQGFGAE-LAQMMVGRVFRHFVRRDFYGQKAFMVNFVHDSLWLDCHLDV 1331

Query: 641  EFNA-----SMLYHLMTSNPSWAKGLPLKA 665
                      +L  + T       G+ LK 
Sbjct: 1332 LEECIRETRDILTEVHTYVAKAFPGVELKV 1361


>gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL
            Brener]
 gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1473

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/330 (11%), Positives = 84/330 (25%), Gaps = 85/330 (25%)

Query: 353  DPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              +  +     +R   ++  G+K   V  D + +E  VLA + G+   +     G D ++
Sbjct: 1156 CQNIPKDDKSPIRRLFVSRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFHI 1215

Query: 411  TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +    +   ++ K             GY+ G   + ++                   
Sbjct: 1216 KRASFFSGLPYDEIYK-------------GYKRGIPEYVQL------------------- 1243

Query: 471  APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                     +F R      P             E   +   +++  + +    +     +
Sbjct: 1244 --RRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLEASIRKEEEEYPGIMQFHRLVRTVALR 1301

Query: 531  TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                G                        + LP+G  + +               +    
Sbjct: 1302 AENPGLPTHFV------------------VELPTGIRMSF---------------KTRDV 1328

Query: 591  YTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDIVLTVHDEIVCETPDTD 640
                  +    +Q    + LA+ M+          +       +V  VHD +  +     
Sbjct: 1329 VLNLPPVKNYPIQGFGAE-LAQMMVGRVFRHFVRRDFYGQKAFMVNFVHDSLWLDCHLDV 1387

Query: 641  EFNA-----SMLYHLMTSNPSWAKGLPLKA 665
                      +L  + T       G+ LK 
Sbjct: 1388 LEECIRETRDILTEVHTYVAKAFPGVELKV 1417


>gi|300021932|ref|YP_003754543.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523753|gb|ADJ22222.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888]
          Length = 205

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 35/180 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + L      D    L            LK  L +
Sbjct: 23  IAIDTET--------MGLNPHRD--RLCLVQLSGGDGTAHLVKFDGKSYDAPNLKALLAD 72

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAV-GEALKLS 119
                + H + F+  VL+    +        CT + ++          LK + GE L + 
Sbjct: 73  PKSLKIFHFARFDVAVLEHYLGVVTSP--IYCTKIASKLARTYTDRHGLKDLVGEILGIE 130

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                       E       Y   DV     +  RL+ + 
Sbjct: 131 ISKQQQSSDWG-------------------AAELSDSQRSYAANDVLHLHALKTRLDEML 171


>gi|47934802|gb|AAT39839.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 228

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 87/249 (34%), Gaps = 42/249 (16%)

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
            L  E  +    +   + ++ +PL +  +E+           Y  +  L+    + +  +
Sbjct: 17  DLVAELKEKQYDLEETVHEKFKPLPTFVKEIV--------PKYKKNGELSSVGLKFLGED 68

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLT 270
            T++      +      +    +++  +L L  G   E  TET      ++ L +   + 
Sbjct: 69  WTQVGGTFSRI-DWPEFNLGSRQQIGRYLRL-FGWKPEKFTETGQAVVDEKTLETVTDIP 126

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
               Q+    +   +  + ++ + ++A+  DGR+ G +  +GA  TGR +         P
Sbjct: 127 E--AQLIAEYLMVGK-RIAQVQSSLDAVEDDGRVHGQVNAIGA-VTGRMTHSSPNMAQTP 182

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
                                             R+C I  +G KLV  D +G+E R+LA
Sbjct: 183 ------------------------AVGVPYGYECRACWIVPDGHKLVGVDASGLELRMLA 218

Query: 391 WMAGEQWKL 399
               +    
Sbjct: 219 SFMNDPTIQ 227


>gi|189427219|ref|YP_001949769.1| gp5 [Salmonella phage phiSG-JL2]
 gi|189085872|gb|ACD75687.1| gp5 [Salmonella phage phiSG-JL2]
          Length = 704

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/499 (10%), Positives = 103/499 (20%), Gaps = 126/499 (25%)

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTE 256
           + A    L       R  ++    +    +       + ++  L     +  +       
Sbjct: 303 NKAQREGLEPCDLDTRDYMEGAPYTPVEFVTFKPSSRDHIQKKLQEAGWVPEKFTEKGAP 362

Query: 257 TTCQRVLSSNKKLTPQ---AIQVFNNRMRASR---SAVLKLNTLVEAMNSDGRLRGTLQF 310
                VL   +   P+    I +    +   +    A       +  +  DG++ G +  
Sbjct: 363 VVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKRIGQAAEGDKAWLRYVQDDGKIHGAVNP 422

Query: 311 LGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
            GA  TGR +        +P   S   E+                 P             
Sbjct: 423 NGA-VTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITGKP------------- 468

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
                     D +G+E R LA         +      +                     R
Sbjct: 469 ----WVQAGIDASGLELRCLAHFMARFDNGEYANEILNGD------IHTKNQNAAELPTR 518

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K       Y  G +                                           
Sbjct: 519 DNAKTFIYGFLYGAGDEKI----------------------------------------- 537

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
                         + +KK + +    ++ L   + Q+  ++     A    + +     
Sbjct: 538 ---GQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVKSSAWIGAEQKVQWKRR--- 591

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                     +    GR +  R                             ++Q+    I
Sbjct: 592 ---------WIKGLDGRKVHVRSPHA---------------------ALNTLLQSAGALI 621

Query: 610 LAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFN--ASMLYHLMTSNP 655
               ++       + G           +  VHDEI                    M    
Sbjct: 622 CKLWIIKTEEMLIEKGLKHGWDGDFAYMAWVHDEIQVACRTEHIAQIVIDTAQEAMRWVG 681

Query: 656 S-WAKGLPLKAEGYESKRY 673
             WA    L  EG     +
Sbjct: 682 EHWAFRCRLDTEGKMGPNW 700



 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 61/240 (25%), Gaps = 62/240 (25%)

Query: 67  TIVAHNS-YFERTVLKACF------NLDIPIHRWICTLVLARSNGL-------------- 105
            IV HN   ++   L+         +  +P    I TLVL+R                  
Sbjct: 55  LIVFHNGHKYDVPALEKLAKLQLNRDFKLPRENCIDTLVLSRLLHANLKDTDMGLLRSGK 114

Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                    AL+A G  L     + ++  + +      E  +     +            
Sbjct: 115 LPGRRFGSHALEAWGYRLGEMKGEYKDDFKAMLEEQGEEYVDGAEWVSFN------EPMM 168

Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193
            Y   DV VT ++                         ++        E    +L     
Sbjct: 169 AYNVQDVVVTVKLLEKFLTDLHYFPAGMDFTKYDADLFWREAGESVDIEHRAAWLLAKQE 228

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G+  +      L   +  +R +L Q+L              E  K      TG  L  
Sbjct: 229 RNGFPFNTKAIEELYVELAAKRAELLQKLTETFGSWYQPKGGKELFKHP---RTGKPLPS 285


>gi|42520711|ref|NP_966626.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410451|gb|AAS14560.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 206

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 34/206 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           + ++ +D E          G+    +   + L    F+D    L    +D   P  L++ 
Sbjct: 19  IRSIAVDTE--------AMGLLHSRD--RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKI 67

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALK 117
           LE+ ++T + H + F+ ++++     +       CT + +R         +LK +   L 
Sbjct: 68  LEDKNITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL- 124

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                      L  +  K +      + N             Y   DV     I ++L+ 
Sbjct: 125 -----------LDTKLNKQQQSSDWGNENLT------DKQKSYAASDVLYLHRIKEKLDL 167

Query: 178 LSSKEQELWYLDQTINDRGYCVDVAL 203
           +  +E       +        +++ L
Sbjct: 168 MLERENRKELAQKCFEFLPTRIELDL 193


>gi|311112135|ref|YP_003983357.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931]
 gi|310943629|gb|ADP39923.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931]
          Length = 650

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 63/487 (12%), Positives = 131/487 (26%), Gaps = 121/487 (24%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCL 236
            +   I   G   D A        +            +  +L +++ +  +    +    
Sbjct: 245 LVAAEIEYYGIPFDTAAHDAHLTEILGPRPPEGEHPAKLMELAEQIRADLFAPHLNPDSP 304

Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L    G+++        +   +   +  ++       +     +  R       
Sbjct: 305 QELLRALHAA-GVNVPSTRSYVLKGWAEETATQRERRWALIEPILRY-KKLYRIFTANGW 362

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           +  ++   +GR R  L+  GA+ TGRW         LP                      
Sbjct: 363 SWADSWVRNGRFRPHLEVGGAA-TGRWGASGGGALQLP---------------------- 399

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY-VT 411
                      +RS ++A EG+  +V+D + IE R+LA ++ ++    A    +    + 
Sbjct: 400 ---------AEIRSAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAGRGTDMYAGIA 450

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             AR   VA  +         KV  LA+ Y G +     +                    
Sbjct: 451 ELARLEGVALTERA-----QAKVGLLAIMYGGRSGEIGALLP----------------HV 489

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            + +  A  F                F+G       + +++           +       
Sbjct: 490 AKLFPRAMEFTERAARIGEVGGQVTTFLGRTSPAPDERFKRT----------VADRSTPA 539

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
            E+    ++R    +   ++ +       +   GR         +R    T      R  
Sbjct: 540 AESRAVSLSRSYGRMTRNFVVQGTAAEWALCWMGRVR-------SRLLTETVFGMPMRT- 591

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
                                           IV  +HDE++   P  +      +    
Sbjct: 592 -------------------------------KIVYFLHDELLLCGPKLEAERVERILR-- 618

Query: 652 TSNPSWA 658
            S    A
Sbjct: 619 ESAAEAA 625


>gi|114769797|ref|ZP_01447407.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|114549502|gb|EAU52384.1| exonuclease, putative [alpha proteobacterium HTCC2255]
 gi|161170293|gb|ABX59263.1| 5-exonuclease family protein [uncultured marine bacterium
           EB000_55B11]
 gi|297183821|gb|ADI19944.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 204

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 33/212 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET     +             + +  F   D    +     D      + + L 
Sbjct: 19  IVAIDTETMGLNPMRD----------RLCVIQFSSGDGHAHIVQIEPDAPQAPNICKILL 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           + +   + H + F+  +LK  F ++I      CT + ++          LK +   +   
Sbjct: 69  DQNKVKLFHFARFDIAILKHHFKINISP--VYCTKIASKLVRTYTNKHGLKNLLREM--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +             +       EY   DV    ++  +L    
Sbjct: 124 ---------LSIEISKQQQSSDWGASELTKAQI------EYAASDVLYLHKLMDKLNLNL 168

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
            +E      +   N       + LA      +
Sbjct: 169 KRENRYEIAEACFNFLPMRATLDLAGWSEDDI 200


>gi|319898371|ref|YP_004158464.1| Ribonuclease D [Bartonella clarridgeiae 73]
 gi|319402335|emb|CBI75874.1| Ribonuclease D [Bartonella clarridgeiae 73]
          Length = 193

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 46/174 (26%), Gaps = 31/174 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L   LE+
Sbjct: 9   IAIDTET--------LGLKPHRD--RLCVVQLSSGDGTADIIQVAKGQNRAPNLVALLED 58

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H   F+  +L   F   +      CT + ++                  ++  
Sbjct: 59  KAITKIFHFGRFDLAILAHTFG--VIPDVVFCTKIASKL-----------------TRTY 99

Query: 124 EEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREIFKRL 175
            +   L     +         +       +A      EY   DV     +    
Sbjct: 100 TDRHGLKEICSELLNINISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKNIF 153


>gi|300742225|ref|ZP_07072246.1| putative DNA polymerase I [Rothia dentocariosa M567]
 gi|300381410|gb|EFJ77972.1| putative DNA polymerase I [Rothia dentocariosa M567]
          Length = 579

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 63/487 (12%), Positives = 132/487 (27%), Gaps = 121/487 (24%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCL 236
            +   I   G   D A+       +            +  +L +++ +  +    +    
Sbjct: 174 LVAAEIEYYGIPFDTAVHDAHLTEILGPRPPEGEHPAKLMELAEQIRADLFAPHLNPDSP 233

Query: 237 EKLKTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           ++L   L    G+++        +   +   +  ++       +     +  R       
Sbjct: 234 QELLRALHAA-GVNVPSTRSYVLKGWAEETATQRERRWVLIEPILRY-KKLYRIFTANGW 291

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           +  ++   +GR R  L+  GA+ TGRW         LP                      
Sbjct: 292 SWADSWVRNGRFRPHLEVGGAA-TGRWGASGGGALQLP---------------------- 328

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY-VT 411
                      +RS ++A EG+  +V+D + IE R+LA ++ ++    A    +    + 
Sbjct: 329 ---------AEIRSAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAGRGTDMYTGIA 379

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             AR   VA  +         KV  LA+ Y G +     +                    
Sbjct: 380 ELARLEGVALTERA-----QAKVGLLAIMYGGRSGEIGALLP----------------HV 418

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
            + +  A  F                F+G       + +++           +       
Sbjct: 419 AKLFPRAMEFTERAARIGEVGGQVTTFLGRTSPTPDERFKRT----------VADRSTPA 468

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
            E+    ++R    +   ++ +       +   GR         +R    T      R  
Sbjct: 469 AESRAVSLSRSYGRMTRNFVVQGTAAEWALCWMGRVR-------SRLLTETVFGMPMRT- 520

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM 651
                                           IV  +HDE++   P  +      +    
Sbjct: 521 -------------------------------KIVYFLHDELLLCGPKLEAERVERILR-- 547

Query: 652 TSNPSWA 658
            S    A
Sbjct: 548 ESAAEAA 554


>gi|260460457|ref|ZP_05808708.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075]
 gi|259033562|gb|EEW34822.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075]
          Length = 206

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 58/212 (27%), Gaps = 35/212 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L   L N
Sbjct: 22  VAIDTET--------LGLNPHRD--RLCVVQISPGDGSADVIQIAPGQKKAPNLVSLLRN 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119
             +T + H   F+  VL   F   +      CT + +R          LK +  E L + 
Sbjct: 72  RGITKLFHYGRFDLAVLYNAFG--VMPEPVFCTKIASRLTRTYTDRHGLKDICFELLGVG 129

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +  A     E                     EY   DV     +   L    
Sbjct: 130 LSKAQQSSDWAAEILSPEQ-------------------LEYAASDVLYLHRLRDVLSGRL 170

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           +++      D           + L     + +
Sbjct: 171 ARDGRTKEADACFRFLPTRAKLDLMGWGEEDI 202


>gi|158334839|ref|YP_001516011.1| ribonuclease D [Acaryochloris marina MBIC11017]
 gi|158305080|gb|ABW26697.1| ribonuclease D [Acaryochloris marina MBIC11017]
          Length = 209

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 58/204 (28%), Gaps = 26/204 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D ET         G+  + +   + L      +  V +       +    LK+ +
Sbjct: 25  DRIAVDTET--------MGLKPHRD--RLCLVQICNPEGQVTVVRIAQGQMDAPNLKQLM 74

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+  V  V H + F+   L    +++       CT + ++                L   
Sbjct: 75  ESDTVLKVFHFARFDIATLLHHLDIETMP--IFCTKIASKLVR------TYSPRHGL--- 123

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                KEL+      E  +     +  N          Y   DV         L  +  +
Sbjct: 124 -----KELVRELVGEELDKSAQSSDWGNAENLSEEQLNYASNDVRYLLSAQATLVKMLER 178

Query: 182 EQELWYLDQTINDRGYCVDVALAH 205
           E+ L             V + L H
Sbjct: 179 EERLELAMACFQCLPTIVTLDLMH 202


>gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA]
 gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA]
          Length = 381

 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 56/182 (30%), Gaps = 27/182 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
            DL    +  Y E   V L  F    +   +       + P  L     N  +  V H +
Sbjct: 32  CDLEADSMHHYQE--KVCLIQFAVPGYAAIVDPLAAPDISP--LAPLFANAAIRKVFHGA 87

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKA-VGEALKLSSQKMEEGKELIA 131
            ++   L   F +++       T++  +  G     L A + +   +   K  +  +   
Sbjct: 88  DYDIRSLHRDFGIEVN--NLFDTMIACQLLGEREFGLAAQLRKRFGVELDKQYQRADWSR 145

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
           R                          EY   D T+  E++++L     ++    ++++ 
Sbjct: 146 RPLTVG-------------------MIEYAVKDTTLLIELYRQLVAELEEKGRRGWVEEE 186

Query: 192 IN 193
             
Sbjct: 187 CE 188


>gi|163842395|ref|YP_001626799.1| hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445]
 gi|163673118|gb|ABY37229.1| Hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445]
          Length = 205

 Score = 74.4 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 48/179 (26%), Gaps = 31/179 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L + L++
Sbjct: 21  VAIDTET--------LGLNPHRD--RLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H   F+  VL   F          CT + ++                  ++  
Sbjct: 71  RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111

Query: 124 EEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            +   L     +         +   +       +   EY   DV     +   LE    
Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLE 170


>gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
            cruzi]
          Length = 1404

 Score = 74.4 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/330 (11%), Positives = 84/330 (25%), Gaps = 85/330 (25%)

Query: 353  DPDPLQIISDCVRSCVIASEGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
              +  +     +R   ++  G+K   V  D + +E  VLA + G+   +     G D ++
Sbjct: 1087 CQNIPKDDKSPIRRLFVSRFGEKGRCVELDYSQLEIVVLALLCGDPRLVSDLNRGVDFHI 1146

Query: 411  TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
               +    +   ++ K             GY+ G   + ++                   
Sbjct: 1147 KRASFFSGLPYDEIYK-------------GYKRGIPEYVQL------------------- 1174

Query: 471  APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                     +F R      P             E   +   +++  + +    +     +
Sbjct: 1175 --RRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLEASIRKEEEEYPGIMQFHRLVRTVALR 1232

Query: 531  TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
                G                        + LP+G  + +               +    
Sbjct: 1233 AENPGLPTHFV------------------VELPTGIRISF---------------KTRDV 1259

Query: 591  YTYGGKLTENIVQAVSRDILAEGMM----------NATKAGYDIVLTVHDEIVCETPDTD 640
                  +    +Q    + LA+ M+          +       +V  VHD +  +     
Sbjct: 1260 VLNLPPVKNYPIQGFGAE-LAQMMVGRVFRHFVRRDFYGQKAFMVNFVHDSLWLDCHLDV 1318

Query: 641  EFNA-----SMLYHLMTSNPSWAKGLPLKA 665
                      +L  + T       G+ LK 
Sbjct: 1319 LEECIRETRDILTEVHTYVAKAFPGVELKV 1348


>gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510]
 gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510]
          Length = 208

 Score = 74.4 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 54/179 (30%), Gaps = 33/179 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + L      D  V L            LK  L +
Sbjct: 25  VAIDTET--------MGLNPHRD--RLCLVQLSAGDGAVHLVQFRPGRYEAPNLKRLLTD 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             VT + H + F+  V+KA   +D       CT V ++          LK + + L    
Sbjct: 75  PGVTKLFHFARFDVAVMKAYLGVDCRP--VYCTKVASKLVRTFTDRHGLKDLCKDL---- 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                   L     K +             +        Y   DV    ++  +L+ + 
Sbjct: 129 --------LGVEISKQQQSSDWGAPELTTDQMK------YAASDVLHLHDLKAKLDVML 173


>gi|121602332|ref|YP_989471.1| 3'-5' exonuclease domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614509|gb|ABM45110.1| 3'-5' exonuclease domain protein [Bartonella bacilliformis KC583]
          Length = 206

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 45/170 (26%), Gaps = 31/170 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L + L +
Sbjct: 22  VAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADIIQIAKGQNSAPNLVKLLAD 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H   F+  +L   F +        CT + ++                  ++  
Sbjct: 72  KAITKIFHFGRFDLAILAHTFGI--MPDAVFCTKIASKL-----------------TRTY 112

Query: 124 EEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREI 171
            +   L     +         +       E       EY   DV     +
Sbjct: 113 TDRHGLKEICSELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHRL 162


>gi|167600469|ref|YP_001671968.1| hypothetical protein PPLUZ19_gp24 [Pseudomonas phage LUZ19]
 gi|161168332|emb|CAP45496.1| hypothetical protein [Pseudomonas phage LUZ19]
          Length = 348

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 2   ATLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDP--- 51
             L +D ET         +     G+ +   D  ++ F   +     V   DC  DP   
Sbjct: 94  KVLSLDIETSPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWMHSDEVIYMDCQGDPLDD 153

Query: 52  -VMPQVLKEALENTDVTIVAHNSY-FER-TVLKACFNLDIPI---HRWICTLVLARSNGL 105
             +   L + L+  D+ IV  N   F+   +    F   +P     + I TL++A+    
Sbjct: 154 MHLLVALHKLLDEADIIIV-QNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAK---- 208

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                     L+  + K    K    R         L+     ++ EAW     Y   DV
Sbjct: 209 -QQFAFTSRKLEYMTHKACTIK---KRLHGKFPGFDLWAACLQDNPEAWEEMRLYNIDDV 264

Query: 166 TVTREIFKRLEPL 178
               E++  + P 
Sbjct: 265 RSMEELYILMRPW 277


>gi|17988111|ref|NP_540745.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
 gi|62289101|ref|YP_220894.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699039|ref|YP_413613.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148559185|ref|YP_001258158.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840]
 gi|189023376|ref|YP_001934144.1| 3'-5' exonuclease [Brucella abortus S19]
 gi|225626663|ref|ZP_03784702.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|225851660|ref|YP_002731893.1| hypothetical protein BMEA_A0127 [Brucella melitensis ATCC 23457]
 gi|237814593|ref|ZP_04593591.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|254690430|ref|ZP_05153684.1| hypothetical protein Babob68_09714 [Brucella abortus bv. 6 str.
           870]
 gi|254694918|ref|ZP_05156746.1| hypothetical protein Babob3T_09702 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696124|ref|ZP_05157952.1| hypothetical protein Babob28_00020 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700933|ref|ZP_05162761.1| hypothetical protein Bsuib55_08749 [Brucella suis bv. 5 str. 513]
 gi|254707182|ref|ZP_05169010.1| hypothetical protein BpinM_09468 [Brucella pinnipedialis
           M163/99/10]
 gi|254709273|ref|ZP_05171084.1| hypothetical protein BpinB_03206 [Brucella pinnipedialis B2/94]
 gi|254713304|ref|ZP_05175115.1| hypothetical protein BcetM6_08117 [Brucella ceti M644/93/1]
 gi|254716342|ref|ZP_05178153.1| hypothetical protein BcetM_07890 [Brucella ceti M13/05/1]
 gi|254731461|ref|ZP_05190039.1| hypothetical protein Babob42_09744 [Brucella abortus bv. 4 str.
           292]
 gi|256030796|ref|ZP_05444410.1| hypothetical protein BpinM2_09123 [Brucella pinnipedialis
           M292/94/1]
 gi|256045912|ref|ZP_05448786.1| hypothetical protein Bmelb1R_15494 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060264|ref|ZP_05450439.1| hypothetical protein Bneo5_07870 [Brucella neotomae 5K33]
 gi|256112626|ref|ZP_05453547.1| hypothetical protein Bmelb3E_08085 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256158817|ref|ZP_05456678.1| hypothetical protein BcetM4_08038 [Brucella ceti M490/95/1]
 gi|256254202|ref|ZP_05459738.1| hypothetical protein BcetB_07895 [Brucella ceti B1/94]
 gi|256258682|ref|ZP_05464218.1| hypothetical protein Babob9C_15316 [Brucella abortus bv. 9 str.
           C68]
 gi|256264829|ref|ZP_05467361.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|256368584|ref|YP_003106090.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915]
 gi|260169700|ref|ZP_05756511.1| 3'-5' exonuclease family protein [Brucella sp. F5/99]
 gi|260546398|ref|ZP_05822138.1| 3'-5' exonuclease [Brucella abortus NCTC 8038]
 gi|260563197|ref|ZP_05833683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260755977|ref|ZP_05868325.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870]
 gi|260759201|ref|ZP_05871549.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292]
 gi|260760489|ref|ZP_05872835.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884998|ref|ZP_05896612.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68]
 gi|261215252|ref|ZP_05929533.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|261218123|ref|ZP_05932404.1| 3'-5' exonuclease [Brucella ceti M13/05/1]
 gi|261221350|ref|ZP_05935631.1| 3'-5' exonuclease [Brucella ceti B1/94]
 gi|261314663|ref|ZP_05953860.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10]
 gi|261316779|ref|ZP_05955976.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94]
 gi|261321030|ref|ZP_05960227.1| 3'-5' exonuclease [Brucella ceti M644/93/1]
 gi|261324237|ref|ZP_05963434.1| 3'-5' exonuclease [Brucella neotomae 5K33]
 gi|261751448|ref|ZP_05995157.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513]
 gi|261759236|ref|ZP_06002945.1| 3'-5' exonuclease [Brucella sp. F5/99]
 gi|265987850|ref|ZP_06100407.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1]
 gi|265992324|ref|ZP_06104881.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994066|ref|ZP_06106623.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|265997310|ref|ZP_06109867.1| 3'-5' exonuclease [Brucella ceti M490/95/1]
 gi|294851524|ref|ZP_06792197.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|297247517|ref|ZP_06931235.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196]
 gi|306842591|ref|ZP_07475240.1| 3'-5' exonuclease [Brucella sp. BO2]
 gi|17983864|gb|AAL53009.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
 gi|62195233|gb|AAX73533.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615140|emb|CAJ10073.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148370442|gb|ABQ60421.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840]
 gi|189018948|gb|ACD71670.1| 3'-5' exonuclease [Brucella abortus S19]
 gi|225618320|gb|EEH15363.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|225640025|gb|ACN99938.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|237789430|gb|EEP63640.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|255998742|gb|ACU47141.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915]
 gi|260096505|gb|EEW80381.1| 3'-5' exonuclease [Brucella abortus NCTC 8038]
 gi|260153213|gb|EEW88305.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260669519|gb|EEX56459.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292]
 gi|260670924|gb|EEX57745.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676085|gb|EEX62906.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870]
 gi|260874526|gb|EEX81595.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68]
 gi|260916859|gb|EEX83720.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya]
 gi|260919934|gb|EEX86587.1| 3'-5' exonuclease [Brucella ceti B1/94]
 gi|260923212|gb|EEX89780.1| 3'-5' exonuclease [Brucella ceti M13/05/1]
 gi|261293720|gb|EEX97216.1| 3'-5' exonuclease [Brucella ceti M644/93/1]
 gi|261296002|gb|EEX99498.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94]
 gi|261300217|gb|EEY03714.1| 3'-5' exonuclease [Brucella neotomae 5K33]
 gi|261303689|gb|EEY07186.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10]
 gi|261739220|gb|EEY27216.1| 3'-5' exonuclease [Brucella sp. F5/99]
 gi|261741201|gb|EEY29127.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513]
 gi|262551778|gb|EEZ07768.1| 3'-5' exonuclease [Brucella ceti M490/95/1]
 gi|262765047|gb|EEZ10968.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether]
 gi|263003390|gb|EEZ15683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1]
 gi|263095285|gb|EEZ18912.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|264660047|gb|EEZ30308.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1]
 gi|294820113|gb|EFG37112.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|297174686|gb|EFH34033.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196]
 gi|306287236|gb|EFM58724.1| 3'-5' exonuclease [Brucella sp. BO2]
 gi|326408140|gb|ADZ65205.1| 3'-5' exonuclease [Brucella melitensis M28]
 gi|326537851|gb|ADZ86066.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 205

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 48/179 (26%), Gaps = 31/179 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L + L++
Sbjct: 21  VAIDTET--------LGLNPHRD--RLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H   F+  VL   F          CT + ++                  ++  
Sbjct: 71  RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111

Query: 124 EEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            +   L     +         +   +       +   EY   DV     +   LE    
Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLE 170


>gi|58698542|ref|ZP_00373443.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534924|gb|EAL59022.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 234

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 68/205 (33%), Gaps = 34/205 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            ++ +D E          G+    +   + L    F+D    L    +D   P  L++ L
Sbjct: 48  RSIAVDTE--------AMGLLHGRD--RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKIL 96

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKL 118
           E+ ++T + H + F+ ++++     +       CT + +R         +LK +   L  
Sbjct: 97  EDKNITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL-- 152

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L  +  K +      + N             Y   DV     I ++L+ +
Sbjct: 153 ----------LDTKLNKQQQSSDWGNENLT------DKQKSYAASDVLYLHRIKEKLDLM 196

Query: 179 SSKEQELWYLDQTINDRGYCVDVAL 203
             +E       +        +++ L
Sbjct: 197 LERENRKELAQKCFEFLPTRIELDL 221


>gi|306844394|ref|ZP_07476984.1| 3'-5' exonuclease [Brucella sp. BO1]
 gi|306275207|gb|EFM56957.1| 3'-5' exonuclease [Brucella sp. BO1]
          Length = 205

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 48/179 (26%), Gaps = 31/179 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L + L++
Sbjct: 21  VAIDTET--------LGLNPHRD--RLCVVQISPGDGTADVIQIDAGQKKAPNLVKLLKD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H   F+  VL   F          CT + ++                  ++  
Sbjct: 71  RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111

Query: 124 EEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            +   L     +         +   +       +   EY   DV     +   LE    
Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLE 170


>gi|225630598|ref|YP_002727389.1| 3'-5' exonuclease [Wolbachia sp. wRi]
 gi|225592579|gb|ACN95598.1| 3'-5' exonuclease [Wolbachia sp. wRi]
          Length = 206

 Score = 74.4 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 68/205 (33%), Gaps = 34/205 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            ++ +D E          G+    +   + L    F+D    L    +D   P  L++ L
Sbjct: 20  RSIAVDTE--------AMGLLHGRD--RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKIL 68

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKL 118
           E+ ++T + H + F+ ++++     +       CT + +R         +LK +   L  
Sbjct: 69  EDKNITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL-- 124

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L  +  K +      + N             Y   DV     I ++L+ +
Sbjct: 125 ----------LDTKLNKQQQSSDWGNENLT------DKQKSYAASDVLYLHRIKEKLDLM 168

Query: 179 SSKEQELWYLDQTINDRGYCVDVAL 203
             +E       +        +++ L
Sbjct: 169 LERENRKELAQKCFEFLPTRIELDL 193


>gi|157825707|ref|YP_001493427.1| ribonuclease D [Rickettsia akari str. Hartford]
 gi|157799665|gb|ABV74919.1| Ribonuclease D [Rickettsia akari str. Hartford]
          Length = 203

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 59/203 (29%), Gaps = 33/203 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + L  F   +    L   V+       LK  L +
Sbjct: 20  IAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFVNQDYTAPNLKALLLD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H + F+   +K   ++D+      CT + ++          LK +   L    
Sbjct: 70  KTRCKIFHFARFDLASIKQYLSIDLE--NIFCTKISSKLVRTYTDNHGLKDLCREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +        N            EY   DV    ++   L+ +  
Sbjct: 124 --------LNINISKQQQSSYWGTDNLS------SEQKEYAAKDVLYLHQLKDMLQKMLL 169

Query: 181 KEQELWYLDQTINDRGYCVDVAL 203
           +E  L              ++ L
Sbjct: 170 RENRLELAHDIFRFLPTRANLDL 192


>gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
 gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5]
          Length = 204

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 33/198 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            LK+ L +
Sbjct: 20  VAIDTET--------LGLNPHRD--RLCVVQLSNGDGTADVVQIPAGHTDAPNLKKLLAD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             VT + H + F+  VL+  F +        CT + ++          LK +   L    
Sbjct: 70  PMVTKLFHFARFDIAVLEHAFGVMTQP--IYCTKIASKLVRTYTDRHGLKDLVREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +             +        Y   DV     + ++L+ + +
Sbjct: 124 --------LGVEISKQQQSSDWGAEKLSEAQ------LTYAASDVLHLHALREKLDTMLA 169

Query: 181 KEQELWYLDQTINDRGYC 198
           +E  +             
Sbjct: 170 RENRMDLAKSCFEFLPTR 187


>gi|326778493|ref|ZP_08237758.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1]
 gi|326658826|gb|EGE43672.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1]
          Length = 558

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 106/402 (26%), Gaps = 115/402 (28%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F   G+ ++       + +        P    +     +  R       + ++    +GR
Sbjct: 234 FARAGIPVKSTRRWELEEL------DHPAVEPLIAY-KKLYRIWTAHGWSWLQDWVREGR 286

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G + +GRW+        +P+                                
Sbjct: 287 FRPEY-QPGGTVSGRWTTNGGGALQIPK-------------------------------V 314

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G +LVVAD   +E RVLA ++ ++  ++      DLY             +
Sbjct: 315 IRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHDGDLYKALS--------DR 366

Query: 424 VTKDQRAIGKVMELALGYQGGAK-AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                R   K+  L   Y   +    + +A+                     +  A  + 
Sbjct: 367 AFSGDREHAKLALLGAVYGQTSGDGLKNLAAL-----------------RRRFPLAVAYV 409

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                   E  +   ++G        A + + + + +              +G    AR 
Sbjct: 410 DDAARAGEEGRVVRTWLGRTSPPAASAGQDEEAGLPQ----EDPEGSGGAPDGGPARARG 465

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           R     V      +  +LML + R  ++                                
Sbjct: 466 RFTRNFVVQGSAADWALLMLAALRRTIFE------------------------------- 494

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
           Q +                  +V   HDE++   P  +    
Sbjct: 495 QGL---------------RAQLVFFQHDEVIVHCPAEESAAV 521


>gi|116249870|ref|YP_765708.1| ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254518|emb|CAK05592.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841]
          Length = 208

 Score = 74.0 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 49/208 (23%), Gaps = 27/208 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++            L   LE+
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADIIRIAAGQKEAPNLVALLED 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H   F+  VL   F   +      CT + +R            +   L   K 
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTF--SVTTTPVFCTKIASRLIR------TYTDRHGL---KD 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L     K +             +       EY   DV     +  +L     ++ 
Sbjct: 123 NLKEMLDVDVSKAQQSSDWAAERLSPAQ------LEYAASDVLYLHALRDKLTERLIRDG 176

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211
              +             + L       +
Sbjct: 177 RYDHATACFEFLPTRAKLDLLGWEEADI 204


>gi|226361457|ref|YP_002779235.1| DNA polymerase [Rhodococcus opacus B4]
 gi|226239942|dbj|BAH50290.1| putative DNA polymerase [Rhodococcus opacus B4]
          Length = 513

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 97/367 (26%), Gaps = 88/367 (23%)

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
            +      +  E+ +     ++ +  +E +    F   G+ L    +   + V       
Sbjct: 176 DLPQRIQDVSVEIGAAFGRRINPASHVEVVDA--FRREGIELASTRKHLLREV------D 227

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P    + ++R   S+         +++   D R R      G   +GRW+        +
Sbjct: 228 HPAVPLLLHHR-DLSKLFSTNGWQWLDSWVRDNRFRPVY-VPGGVVSGRWASRGGGALQI 285

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P+P                               +RS VIA  G   V+AD   +E R+L
Sbjct: 286 PKP-------------------------------LRSSVIADPGHTFVIADAGQLEPRIL 314

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A M+G+   + A               +    A+     R   KV  L + Y   A    
Sbjct: 315 AAMSGDTRMVAA---------AGADDLYAPVAAETFDGDRGKAKVAILGVLYGATAG--- 362

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                                    +  A  +            +   ++G AC      
Sbjct: 363 -------------EARSLLTLLRTRFPVAVEYVERAARAGERGEVVHSWLGRACP----- 404

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                    + W+                 +R R     V         + +L   R  +
Sbjct: 405 -----PPSPDFWSHGDA------------RSRGRFTRNFVVQATASEWALCVLADLRRRL 447

Query: 570 YRDVGNN 576
             +  + 
Sbjct: 448 ADEPDSE 454


>gi|111019317|ref|YP_702289.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
 gi|110818847|gb|ABG94131.1| probable DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
          Length = 513

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 96/367 (26%), Gaps = 88/367 (23%)

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL 269
            +      +  E+ S     ++ +  +E +    F   G+ L    +   + V       
Sbjct: 176 DLPQRIQDVTVEIGSAFGRRINPASHVEVVDA--FRREGIELASTRKHLLREV------D 227

Query: 270 TPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
            P    +  +R   S+         +++   D R R      G   +GRW+        +
Sbjct: 228 HPAVPLLLRHR-DLSKLFSTNGWQWLDSWVRDDRFRPVY-VPGGVVSGRWASRGGGALQI 285

Query: 330 PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
           P+P                               +RS VIA  G   V+AD   +E R+L
Sbjct: 286 PKP-------------------------------LRSSVIADPGHTFVIADAGQLEPRIL 314

Query: 390 AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           A M+G+   + A               +    A+     R   KV  L + Y   A    
Sbjct: 315 AAMSGDARMVAA---------AGADDLYAPVAAETFDGDRGKAKVAILGVLYGATAG--- 362

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                                    +  A  +            +   ++G AC      
Sbjct: 363 -------------EARSLLTLLRTRFPVAVEYVERAARAGERGEVVHSWLGRACP----- 404

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLV 569
                    + W+                 +R R     V         + +L   R  +
Sbjct: 405 -----PPSPDFWSHGDA------------RSRGRFTRNFVVQATAAEWALCVLADLRRRL 447

Query: 570 YRDVGNN 576
             D  + 
Sbjct: 448 ADDPDSE 454


>gi|33321977|gb|AAQ06707.1|AF496050_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 80

 Score = 74.0 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 234 RCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
              ++L   LF + GL +   T+   +T   VL+  K+ +P    +   R   S+     
Sbjct: 1   NSPKQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPXVSDILEYRQ-ISKIQSTY 59

Query: 291 LNTLVEAMNS-DGRLRGTLQF 310
           +  L++ ++  DGR+      
Sbjct: 60  VKGLLDVIDERDGRIHTRYLQ 80


>gi|88608093|ref|YP_506413.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600262|gb|ABD45730.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 206

 Score = 73.6 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 63/211 (29%), Gaps = 33/211 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E+   ++              + L      D    L            LK  L +
Sbjct: 21  IAIDTESMGLVN----------RRDRLCLVQLSTGDGTAHLVRFNGTDYSAPRLKSLLVD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             V  + H + F+  +L+      +      CT + +R         +LK +   L L  
Sbjct: 71  PAVIKIFHFARFDIAILRHYLG--VLTENCYCTKIASRLVRTYTDHHSLKELC--LDLLG 126

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            ++ +GK+         T                R    Y   DV     I + L+ +  
Sbjct: 127 VRLNKGKQSSDWGSTSLT----------------REQMSYAASDVLYLHAIKEALDVMLK 170

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           +E+ +           Y  ++ L    NQ +
Sbjct: 171 REKRIELARACFQFLPYRAELDLLGWENQDI 201


>gi|315122172|ref|YP_004062661.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495574|gb|ADR52173.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 209

 Score = 73.6 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 51/205 (24%), Gaps = 35/205 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET   I               + +      D   ++     +      L   L N
Sbjct: 23  IAVDTETLGLIP----------RRDRLCVVQLSPGDGTADIIRIAAEQKNAPNLVTMLAN 72

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS----NGLPSALKAVGEALKLS 119
                + H + F+  VL   F + +      CT + +R              + E L + 
Sbjct: 73  ETQEKIFHYARFDIAVLFYTFGVRVKP--IFCTKIASRLTRTYIDRHGLKDNLRELLGVD 130

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                    +  +      +Y   DV     + ++     
Sbjct: 131 ISKKQQLSDW-------------------SEDDLSHEQLQYAASDVVHLHALREKFIAKL 171

Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204
                        N      ++ L 
Sbjct: 172 QSLGRSDVASACFNFLMSRAELDLL 196


>gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain
            Friedlin]
 gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major
            strain Friedlin]
          Length = 1429

 Score = 73.6 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/422 (10%), Positives = 100/422 (23%), Gaps = 111/422 (26%)

Query: 256  ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFL 311
            +   + VL+S      +   +   R    R     L       +  ++ DGR+   +  +
Sbjct: 1018 KVFSETVLASLHAHGVKPAGLLLQRQLLDRHTSTFLQPSTGGRLAILHRDGRVHQHI-DM 1076

Query: 312  GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             A+ T R        QN+P+  +S                            VR   ++ 
Sbjct: 1077 TATTTSRTVSAYPSCQNIPKDDKS---------------------------SVRRLFVSR 1109

Query: 372  EGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
             G K   V  D + +E  VLA +  +        +G D +V   A    +   +      
Sbjct: 1110 FGSKGRCVEVDYSQLEIVVLAILCNDANLTNDLNSGVDFHVKRAAFFSGLPYDE------ 1163

Query: 430  AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
                       YQG  +   K                             +F R      
Sbjct: 1164 ----------IYQGYKRNVPKYVK------------------LRRTAKQFSFQRLYGAGV 1195

Query: 490  PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            P             E   +   +++  +++    +     +    G              
Sbjct: 1196 PLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNPGLPTSFI-------- 1247

Query: 550  YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                        +P+G  +                 +          +    +Q    ++
Sbjct: 1248 ----------AEMPTGLRMSL---------------RTRDVVLNLPPIKNYPIQGYGAEL 1282

Query: 610  LAEGMMNATKA---------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAK 659
                +    +             ++  VHD +  +               ++ S   +  
Sbjct: 1283 AQMMLGRLYRHFVRKDFYDDRAFLINFVHDSVWMDCHVDVLRECVRDTCRILGSVHEYVP 1342

Query: 660  GL 661
             +
Sbjct: 1343 KV 1344


>gi|23501034|ref|NP_697161.1| 3'-5' exonuclease family protein [Brucella suis 1330]
 gi|161618108|ref|YP_001591995.1| hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365]
 gi|254705301|ref|ZP_05167129.1| hypothetical protein Bsuib36_15553 [Brucella suis bv. 3 str. 686]
 gi|260567236|ref|ZP_05837706.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40]
 gi|261756011|ref|ZP_05999720.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686]
 gi|23346898|gb|AAN29076.1| 3'-5' exonuclease family protein [Brucella suis 1330]
 gi|161334919|gb|ABX61224.1| Hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365]
 gi|260156754|gb|EEW91834.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40]
 gi|261745764|gb|EEY33690.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686]
          Length = 205

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 31/179 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++     D      L + L++
Sbjct: 21  VAIDTET--------LGLNPHRD--RLCVVQISPGDGTADVIQIEADQKKAPNLVKLLKD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H   F+  VL   F          CT + ++                  ++  
Sbjct: 71  RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111

Query: 124 EEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            +   L     +         +   +       +   EY   DV     +   LE    
Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLE 170


>gi|192288480|ref|YP_001989085.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
 gi|192282229|gb|ACE98609.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1]
          Length = 204

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 55/184 (29%), Gaps = 33/184 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            LK+ L +
Sbjct: 20  VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGATDAPNLKKLLGD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             V  + H + F+   L   F   +      CT + +R          LK +   L    
Sbjct: 70  PAVVKIFHFARFDLAALYKAFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +        +  + + A      Y   DV     +  +L+ + +
Sbjct: 124 --------LGIDLSKQQQSSDWGADSLSDAQLA------YAASDVLHLHALRDKLDTMLA 169

Query: 181 KEQE 184
           +E  
Sbjct: 170 RENR 173


>gi|119713543|gb|ABL97595.1| putative exonuclease [uncultured marine bacterium EB0_39F01]
          Length = 204

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 33/212 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET     +             + +  F   D    +     D      + + L 
Sbjct: 19  IVAIDTETMGLNPMRD----------RLCVIQFSSGDGNAHIVQIEPDAPQAPNICKILL 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           + +   + H + F+  +LK  F ++I      CT + ++          LK +   +   
Sbjct: 69  DQNKVKLFHFARFDIAILKHHFKINISP--VYCTKIASKLVRTYTNKHGLKNLLREM--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +             +       EY   DV    ++  +L    
Sbjct: 124 ---------LSIEISKQQQSSDWGASELTKAQI------EYAASDVLYLHKLMDKLNLNL 168

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
            +E      +   N       + LA      +
Sbjct: 169 KRENRYEIAEACFNFLPMRATLDLAGWSEDDI 200


>gi|194100439|ref|YP_002003812.1| gp5 [Klebsiella phage K11]
 gi|193201378|gb|ACF15856.1| gp5 [Klebsiella phage K11]
          Length = 709

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/474 (10%), Positives = 97/474 (20%), Gaps = 130/474 (27%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
             +V +    + +   L     +  E            VL   +   P+  +  +     
Sbjct: 335 EHVVFNPSSRDHIALKLKEAGWVPTEFTEKGAPKVDDEVLEHVRVGDPEKQRCIDLIKEY 394

Query: 284 SRSAV------LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSH 336
                            +  +  DG++ G++   GA  TGR +        +P   S   
Sbjct: 395 LMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNPNGA-VTGRATHSFPNLGQVPGVRSPYG 453

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
           E                  P                       D +G+E R LA      
Sbjct: 454 EPCRAAFGAEHHLDGLTGQP-----------------WVQAGIDASGLELRCLAHF---- 492

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTG 456
             +  ++ G    V        V         R   K       Y  G +          
Sbjct: 493 --MSKYDDGAYADVILNGDIHTVNQTAAELPTRDNAKTFIYGFLYGAGDEKI-------- 542

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
                                                          + +KK + +    
Sbjct: 543 ------------------------------------GQIVGAGKERGKELKKKFLENTPA 566

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
           ++ L   + Q   ++          K +               +    GR +  R     
Sbjct: 567 IAALREGIQQTLVESSRWVAGEQKVKWKRR------------WIKGLDGRKVHVRSPHA- 613

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI------------ 624
                                   ++Q+    I    ++   +                 
Sbjct: 614 --------------------ALNTLLQSAGALICKLWIVETEELLLKAGLKHGWDGDFAY 653

Query: 625 VLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKG-----LPLKAEGYESKRY 673
           +  VHDEI      ++   A  +  +                 L  EG     +
Sbjct: 654 MAWVHDEIQVACRTSEI--AQQVIDIAQQAMRNVGDHFKFRCRLDTEGKMGPNW 705


>gi|114706944|ref|ZP_01439843.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
 gi|114537494|gb|EAU40619.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
          Length = 207

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 51/189 (26%), Gaps = 17/189 (8%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET     +             + +      D   ++            +   L +
Sbjct: 20  VAIDTETLGLNTMRD----------RLCVVQLSPGDGTADVVQIAKGQTEAPNISALLAD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
              T + H + F+   L   F          CT + +R          LK +   L  + 
Sbjct: 70  ASKTKIFHYARFDVAALYHAFG--AMTEGIFCTKIASRLTRTYTDRHGLKDLARELVGVD 127

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD-VTVTREIFKRLEPL 178
             K ++  +           +         H     L+    + D + + RE F+ L   
Sbjct: 128 LSKQQQSSDWAVETLSPAQLDYAASDVLYLHDIMGALYKRLEREDRMDLARECFRFLPMR 187

Query: 179 SSKEQELWY 187
              +   W 
Sbjct: 188 VRLDLAGWE 196


>gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400]
          Length = 381

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 53/182 (29%), Gaps = 27/182 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
            DL    +  Y E   V L  F    +   +       + P  L     N  +  V H +
Sbjct: 32  CDLEADSMHHYQE--KVCLIQFAVPGYAAIVDPLAAPDISP--LAPLFANAAIRKVFHGA 87

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKA-VGEALKLSSQKMEEGKELIA 131
            ++   L   F +++       T++  +  G     L A + +   +   K  +  +   
Sbjct: 88  DYDIRSLHRDFGMEVN--NLFDTMIACQLLGEREFGLAAQLRKRFGVELDKQYQRADWSR 145

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
           R                          EY   D T+  E+  +L      +    ++++ 
Sbjct: 146 RPLTPG-------------------MIEYAVKDTTLLIELCWQLATDLEAKGRRGWVEEE 186

Query: 192 IN 193
             
Sbjct: 187 CE 188


>gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1429

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 107/423 (25%), Gaps = 113/423 (26%)

Query: 256  ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFL 311
            +   + VL+S      +   +   R    R     L       +  ++ DGR+   +  +
Sbjct: 1018 KVFSEAVLASLHAHGVKPAGLLLQRQLLDRHTSTFLQPSTGGRLAILHRDGRVHQHI-DM 1076

Query: 312  GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             A+ T R        QN+P+  +S                            VR   ++ 
Sbjct: 1077 TATTTSRTVSAYPSCQNIPKDDKS---------------------------SVRRLFVSR 1109

Query: 372  EGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
             G K   V  D + +E  VLA +  +    K   +G D +V   A    +   +      
Sbjct: 1110 FGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDE------ 1163

Query: 430  AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
                       YQG  +   K                       +     +F R      
Sbjct: 1164 ----------IYQGYKRNVPKYVK------------------LRKTAKQFSFQRLYGAGV 1195

Query: 490  PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            P             E   +   +++  +++    +     +    G              
Sbjct: 1196 PLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNPGLPTSFI-------- 1247

Query: 550  YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                        +P+G  +                 +          +    +Q    + 
Sbjct: 1248 ----------AEMPTGLRMSL---------------RTRDVVLNLPPIKNYPIQGYGAE- 1281

Query: 610  LAEGMM----------NATKAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWA 658
            LA+ M+          +  K    ++  VHD +  +          +    ++ S   + 
Sbjct: 1282 LAQMMLGRLYRHFVRKDFYKDRAFLINFVHDSVWMDCHVDVLRECVTDTCRILGSVHEYV 1341

Query: 659  KGL 661
              +
Sbjct: 1342 PKV 1344


>gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21]
 gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21]
          Length = 377

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 35/193 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L  D E  S        +  Y E   V L           +          +VL     
Sbjct: 34  VLAFDLEADS--------LHHYTE--KVCLIQVSSASEDRLIDPLAPID--VKVLAPIFA 81

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG-EALKLSS 120
           N  +  + H + ++   L   F +++       T++ ++  G     L A+  +   +  
Sbjct: 82  NPAIKKIFHGADYDMRSLYRDFGIEV--VNLFDTMIASQFLGESEFGLAALLKKRFGVEL 139

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +   R               P  +E      +Y   D ++  E++++LE    
Sbjct: 140 DKRYQKADWSKR---------------PFSQE----MLDYAMKDTSLLIELYRQLEAELK 180

Query: 181 KEQELWYLDQTIN 193
           ++  L ++++   
Sbjct: 181 QKGRLAWVEEESE 193


>gi|148251746|ref|YP_001236331.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
 gi|146403919|gb|ABQ32425.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           BTAi1]
          Length = 204

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 50/179 (27%), Gaps = 33/179 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            LK  L N
Sbjct: 20  VAIDTET--------MGLNPHRD--RLCVVQLSPGDGSADVVQIPKGHTDAPNLKALLAN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             +T + H + F+   L   F   +      CT + +R          LK +   L    
Sbjct: 70  PAITKIFHFARFDVATLFHTFG--VMPQPVYCTKIASRLARTYTDRHGLKDLVREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                   L     K +        N             Y   DV     + ++L+ + 
Sbjct: 124 --------LNVDLSKQQQSSDWGADNLS------EPQLAYAASDVLHLHALREKLDVML 168


>gi|254487503|ref|ZP_05100708.1| ribonuclease D [Roseobacter sp. GAI101]
 gi|214044372|gb|EEB85010.1| ribonuclease D [Roseobacter sp. GAI101]
          Length = 204

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 50/186 (26%), Gaps = 33/186 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L            L   LE
Sbjct: 19  IVAIDCET--------MGLHPHRD--RLCVVQLSGGDGHAHLVQIGKGQTEAPNLCALLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           + +V  + H   F+   ++  F          CT + +R          L  + + L   
Sbjct: 69  DPEVLKLFHFGRFDIAAMQNAFG--AKTAPVYCTKIASRLVRTFTDRHGLAKLCQEL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +             +        Y   DV    ++  +L  + 
Sbjct: 124 ---------LGTDISKQQQSSDWGAAQLTQAQID------YAASDVLYLHQLRDKLNAML 168

Query: 180 SKEQEL 185
            +E  +
Sbjct: 169 IREDRM 174


>gi|47934628|gb|AAT39752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 26/168 (15%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           + +    +++   L    G+  +  TE     V                 R    +  V 
Sbjct: 49  IFNPGSRKQIAERL-QGLGVTFKKKTEKGNIIVDEKVLDGIDLPEAKAVARYMMLQKRVA 107

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           ++++ ++A+  DGR+ G +   GA  TGR +        +P  S                
Sbjct: 108 QIDSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVPAVSAP-------------- 152

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                          RSC    EG  LV  D +G+E R+LA     + 
Sbjct: 153 ----------FGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMETKT 190


>gi|16331359|ref|NP_442087.1| ribonuclease D [Synechocystis sp. PCC 6803]
 gi|1001530|dbj|BAA10157.1| ribonuclease D [Synechocystis sp. PCC 6803]
          Length = 217

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 28/198 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D ET         G+  + +   + L      +  V              L   +
Sbjct: 29  KEVAVDTET--------MGLNPHRD--RLCLVQICDPEGNVTALRIAKGQEEAPNLTRLM 78

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+  +T + H + F+   LK  F  DI  +   CT + ++     ++   +         
Sbjct: 79  EDPGITKIFHFARFDTAQLKHTF--DIKTYPIFCTKIASKIARTYTSHHGL--------- 127

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                K L+      E  +     +  N     +    Y   DV     +  +LE +   
Sbjct: 128 -----KTLVQELVGVELDKSSQCSDWGNAANLSKAQLAYAANDVRYLIPLRHKLEKML-- 180

Query: 182 EQELWYLDQTINDRGYCV 199
            +E              V
Sbjct: 181 AREDRLRLAQRCFECLPV 198


>gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem]
 gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem]
          Length = 377

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 35/193 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L  D E  S        +  Y E   V L           +          +VL     
Sbjct: 34  VLAFDLEADS--------LHHYTE--KVCLIQVSSTSEDRLIDPLAPID--VKVLAPIFA 81

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG-EALKLSS 120
           N  +  + H + ++   L   F +++       T++ ++  G     L A+  +   +  
Sbjct: 82  NPAIKKIFHGADYDMRSLYRDFGIEV--VNLFDTMIASQFLGESEFGLAALLKKRFGVEL 139

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +   R               P  +E      +Y   D ++  E++++LE    
Sbjct: 140 DKRYQKADWSKR---------------PFSQE----MLDYAMKDTSLLIELYRQLEAELK 180

Query: 181 KEQELWYLDQTIN 193
           ++  L ++++   
Sbjct: 181 QKGRLAWVEEESE 193


>gi|38707863|ref|NP_944958.1| Putative DNA polymerase [Enterobacteria phage Felix 01]
 gi|33340466|gb|AAQ14817.1| putative DNA polymerase [Enterobacteria phage Felix 01]
          Length = 906

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/444 (13%), Positives = 115/444 (25%), Gaps = 67/444 (15%)

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             +  +  ++K    L          LTE++   +     +   +   + + R     S 
Sbjct: 480 QYIEHNWSVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKYYTLMHRRRTIENSK 539

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             +    +  +  DGRL       GA   G  +G +                        
Sbjct: 540 DDE-KGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ---------------------- 571

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA------ 401
             I + P    +  + +R+  I  EG  ++  D    +  +L    G++   KA      
Sbjct: 572 YGIVNVPSGAAVYGEPMRAVWICEEGTDIISVDQNSAQLVLLCNFMGDEDFTKAVTEGKE 631

Query: 402 -------------FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
                         +  +        +           +         L   Y       
Sbjct: 632 SVEFTKQDDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHTLNSIY----FGL 687

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV-K 507
            K              L+   +   +      +         + A       T    + K
Sbjct: 688 NKEEDIVRCRETQDEELLHEITKGRKKAKNGIYALLFGAGDEKFAKTIKASSTEEGALTK 747

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + +  +  ++ +L + L + F+ T +  + +  +        Y+K     L    P    
Sbjct: 748 QTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKGGYIKVAGAWLWCKSPHKL- 806

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
           L Y  +G+     N       RE T       N                    G   V +
Sbjct: 807 LNYTLMGSEAQVQNEGINLANRELTERKLTVLNG--------------RKPAIGARWVCS 852

Query: 628 VHDEIVCETPDTDEFNASMLYHLM 651
            HDE+  E P  D  +   +   M
Sbjct: 853 YHDEVSLEVPTKDVPDVKEIIDRM 876


>gi|319781433|ref|YP_004140909.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167321|gb|ADV10859.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 206

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 56/204 (27%), Gaps = 35/204 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L   L N
Sbjct: 22  VAIDTET--------LGLNPHRD--RLCVVQISPGDGSADVIQIAPGQKKAPNLVSLLRN 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119
             VT + H   F+  VL   F   +      CT + +R          LK +  E L + 
Sbjct: 72  RGVTKLFHYGRFDLAVLYNAFG--VMPEPVFCTKIASRLTRTYTDRHGLKDICFELLGVG 129

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +  A     E                     EY   DV     +   L    
Sbjct: 130 LSKAQQSSDWAAETLSPEQ-------------------LEYAASDVLYLHRLRDVLAGRL 170

Query: 180 SKEQELWYLDQTINDRGYCVDVAL 203
           +++      D           + L
Sbjct: 171 ARDGRTKEADACFRFLPTRAKLDL 194


>gi|298491354|ref|YP_003721531.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
 gi|298233272|gb|ADI64408.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
          Length = 209

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 26/202 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+    +   + L         V              LK+ LE 
Sbjct: 27  IAVDTET--------MGLLPQRD--RLCLVQLCNSQGKVTAICIAKGQTEAPNLKQLLEA 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           T +  V H + F+   L+   NL+I +    CT + ++     + L  +           
Sbjct: 77  THILKVFHFARFDVATLRH--NLEIQVQPVFCTKIASKLARTYTNLHGL----------- 123

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+++    + E  +     +  N          Y   DV     + ++L  +  +E 
Sbjct: 124 ---KDVVQELEQVELDKSAQSSDWGNAVNLSETQLSYAANDVRYLLNVQQKLTQMLEREG 180

Query: 184 ELWYLDQTINDRGYCVDVALAH 205
                 Q        V + L  
Sbjct: 181 RWELAQQCFQVLPTLVSLDLLQ 202


>gi|33340353|gb|AAQ14704.1|AF320576_163 putative DNA polymerase [Enterobacteria phage Felix 01]
          Length = 909

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/444 (13%), Positives = 115/444 (25%), Gaps = 67/444 (15%)

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             +  +  ++K    L          LTE++   +     +   +   + + R     S 
Sbjct: 483 QYIEHNWSVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKYYTLMHRRRTIENSK 542

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             +    +  +  DGRL       GA   G  +G +                        
Sbjct: 543 DDE-KGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ---------------------- 574

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA------ 401
             I + P    +  + +R+  I  EG  ++  D    +  +L    G++   KA      
Sbjct: 575 YGIVNVPSGAAVYGEPMRAVWICEEGTDIISVDQNSAQLVLLCNFMGDEDFTKAVTEGKE 634

Query: 402 -------------FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
                         +  +        +           +         L   Y       
Sbjct: 635 SVEFTKQDDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHTLNSIY----FGL 690

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV-K 507
            K              L+   +   +      +         + A       T    + K
Sbjct: 691 NKEEDIVRCRETQDEELLHEITKGRKKAKNGIYALLFGAGDEKFAKTIKASSTEEGALTK 750

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           + +  +  ++ +L + L + F+ T +  + +  +        Y+K     L    P    
Sbjct: 751 QTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKGGYIKVAGAWLWCKSPHKL- 809

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLT 627
           L Y  +G+     N       RE T       N                    G   V +
Sbjct: 810 LNYTLMGSEAQVQNEGINLANRELTERKLTVLNG--------------RKPAIGARWVCS 855

Query: 628 VHDEIVCETPDTDEFNASMLYHLM 651
            HDE+  E P  D  +   +   M
Sbjct: 856 YHDEVSLEVPTKDVPDVKEIIDRM 879


>gi|27375830|ref|NP_767359.1| hypothetical protein blr0719 [Bradyrhizobium japonicum USDA 110]
 gi|27348968|dbj|BAC45984.1| blr0719 [Bradyrhizobium japonicum USDA 110]
          Length = 204

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 35/180 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            LK  L N
Sbjct: 20  VAIDTET--------MGLNPHRD--RLCVVQLSPGDGSADVVQIPKGHTDAPNLKALLAN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119
             +T + H + F+  VL    +  +      CT + +R          LK +  E L + 
Sbjct: 70  PAITKIFHFARFDVAVL--YQSFGVMTGPIYCTKIASRLTRTYTDRHGLKDLVREVLNVD 127

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +  +                            Y   DV     + +RL+ + 
Sbjct: 128 LSKQQQSSDWGS-------------------DSLTEPQLAYAASDVLHLHALRERLDAML 168


>gi|57239514|ref|YP_180650.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58579496|ref|YP_197708.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58617549|ref|YP_196748.1| putative ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|57161593|emb|CAH58521.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58417161|emb|CAI28274.1| Probable ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|58418122|emb|CAI27326.1| Probable ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
          Length = 205

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 60/207 (28%), Gaps = 35/207 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            T+ +D ET          +        + L      +  V L            LK+ L
Sbjct: 18  NTVAVDTET----------MGLVCRRDRLCLVQMSGSNGNVHLVKFPSTEYQASNLKKIL 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALK 117
            +  +T + H + F+ T ++    +        CT + ++          LK +  E L 
Sbjct: 68  SDLSITKIFHFARFDITAIRYYLGIW--AIPCYCTKIASKLARTYTDHHGLKELCNELLG 125

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K+++  +        E                      Y   DV     +  +L+ 
Sbjct: 126 IKLNKVQQSSDWGKEVLTSEQLN-------------------YAASDVIHLHALKSKLDA 166

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALA 204
           +  +E +        +     V + L 
Sbjct: 167 MLERENKQELAKSCFDFLPTRVQLDLL 193


>gi|190889732|ref|YP_001976274.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|190695011|gb|ACE89096.1| ribonuclease III protein [Rhizobium etli CIAT 652]
          Length = 208

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 48/208 (23%), Gaps = 27/208 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++            L   LE+
Sbjct: 24  VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H   F+  VL   F +        CT + +R                L   K 
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRL---SRTYTD---RHGL---KD 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L     K +             +       EY   DV     +  +L     ++ 
Sbjct: 123 NLKEMLDVDISKTQQSSDWGAETLSPAQ------LEYAASDVLYLHALRDKLTARLIRDG 176

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211
              +             + L       +
Sbjct: 177 RFDHATACFAFLPTRAKLDLLGWEEADI 204


>gi|194473823|ref|YP_002048647.1| DNA polymerase [Morganella phage MmP1]
 gi|194307044|gb|ACF42026.1| DNA polymerase [Morganella phage MmP1]
          Length = 703

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 87/765 (11%), Positives = 177/765 (23%), Gaps = 168/765 (21%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL---KEALEN 63
           D ET         G+ K  +        + +        D  ++   P  L    + LE 
Sbjct: 5   DIETD--------GLLKQTKRFHC-GVTYDY--------DTDYEKFTPDELSGYLDLLEE 47

Query: 64  ---TDVTIVAHNS-YFERTVLKA------CFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
               D  IV HN   F+   L          + ++P    + TLV++R     + LK   
Sbjct: 48  VVAKDGLIVFHNGTKFDTKALTKLAKLQLNRDFELPKRNCLDTLVISRLL--HANLKNTD 105

Query: 114 EAL---KLSSQKMEEGKELIARFCKGETHECLYDRNK----------PNHREAW----RL 156
             L    +   K      L A   +    +  Y  +            +  + W    + 
Sbjct: 106 APLLRKGILPGKRYGSHALEAWGYRLGVLKGEYKDDYKREVEAQGEEYHEGDEWLYFNQA 165

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKE------------------------------QELW 186
             +Y   DV VT+ + ++    S                                  +  
Sbjct: 166 MLDYNVQDVVVTKALLEKFLQDSWYFPVNEGEDWTVYTTMTATEFWSRVNYSVTLEHDAA 225

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           +L   +   G+  D              R KL  +L                  +W   +
Sbjct: 226 WLLAKMELNGFPFDTESIEGHYAKWSALREKLLAKLVDTFG-------------SWYRPK 272

Query: 247 TGLHL---EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS-AVL---KLNTLVEAMN 299
            G          +   +  L       P+A  V     + S++  V             N
Sbjct: 273 GGNTPFRHPKTGKPMKKYPLVK----YPKAGSVLTKAGKPSKTPYVKDCPYTPVEYVTFN 328

Query: 300 SDGRLRGTLQFLGA-------SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
              R    L+   A       + TG+        +++       +    +I         
Sbjct: 329 PSSRDHIQLKLQEAGWVPTEFTPTGQPVVDDTVLEHVKVDDPEKQASIDLIKDYLLIQKR 388

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                +     +R   +  +G+     +  G              ++ +           
Sbjct: 389 IGQAAEGDKAWLR--YVEEDGRMHGSVNPNGAVTGRATHSFPNVAQVPSVRAPYGEECRK 446

Query: 413 YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKM-----ASTTGLNLNTFAHLVK 467
              + +      TKD      +    L  +  A    +      A           +   
Sbjct: 447 AFGAEHNRKPDGTKDPWVQAGIDASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQNA 506

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                 +      +         +            + +K  + +    ++ L   + Q 
Sbjct: 507 AELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKAKFLENTPAIAALRESIEQT 566

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
             ++ +         R        K       +    GR +  R                
Sbjct: 567 LVKSSKW-------VRNADGTSEQKVSWKRRWVKGLDGRKVHVRSPHA------------ 607

Query: 588 TREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL----------------TVHDE 631
                        ++Q+    I  + ++   +    ++L                 VHDE
Sbjct: 608 ---------ALNTLLQSAGALICKQWIVTTEE----MLLAKGLKHGWDGDFAYMAWVHDE 654

Query: 632 IVCETPDTDEFN--ASMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673
           I     +              M      +     L  EG     +
Sbjct: 655 IQVACRNEAIAKIVVETAQEAMRKVGEMFNFRCQLDTEGKIGANW 699


>gi|307151178|ref|YP_003886562.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
 gi|306981406|gb|ADN13287.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
          Length = 209

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 54/205 (26%), Gaps = 34/205 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+  + +   + L         V              LK+ +EN
Sbjct: 27  IAVDTET--------MGLIPHRD--RLCLVQLCDPTGYVTAIRIAKGQKEAPKLKQLMEN 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
                V H + F+   L+    ++       CT + ++          LK++   L  + 
Sbjct: 77  NHSIKVFHFARFDVAQLRHHLGIE--TTPIFCTKIASKLARTYTSSHGLKSLVLELEGIE 134

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                               Y   DV     + ++L  + 
Sbjct: 135 LDKTAQSSDWGN------------------AANLSEEQLSYAANDVRYLLGLKQKLITML 176

Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204
            +E                V + L 
Sbjct: 177 QREDRWQLAQDCFQCLPVIVSLDLL 201


>gi|15604287|ref|NP_220803.1| hypothetical protein RP422 [Rickettsia prowazekii str. Madrid E]
 gi|3860979|emb|CAA14879.1| unknown [Rickettsia prowazekii]
 gi|292572036|gb|ADE29951.1| Ribonuclease D [Rickettsia prowazekii Rp22]
          Length = 203

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 60/203 (29%), Gaps = 33/203 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+  + +   + L  F   +    L   ++       LK  L +
Sbjct: 20  IAVDTET--------MGLNIHRD--KLCLLQFSNGNGEAHLVHFINQDYTAPNLKMLLLD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H + F+   +K   ++D+      CT + ++          LK +   L    
Sbjct: 70  KTRCKIFHFARFDLASIKKYLSIDLE--NIFCTKISSKLVRTYTDSHGLKDLCREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +        +    +       EY   DV    ++   L+ +  
Sbjct: 124 --------LNINISKQQQSSYWGTDHLSLEQ------KEYAAKDVLYLHQLKDILQKMLL 169

Query: 181 KEQELWYLDQTINDRGYCVDVAL 203
           +E  L             V + L
Sbjct: 170 RENRLELAHDIFRFLPTRVHLDL 192


>gi|153007480|ref|YP_001368695.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188]
 gi|151559368|gb|ABS12866.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188]
          Length = 205

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 48/181 (26%), Gaps = 35/181 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L + L++
Sbjct: 21  VAIDTET--------LGLNPHRD--RLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             +T + H   F+  VL   F          CT + ++          LK +   L    
Sbjct: 71  RSITKIFHFGRFDLAVLAQAFG--TMPQPVFCTKIASKLTRTYTDRHGLKELCNELL--- 125

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF-GEYCKGDVTVTREIFKRLEPLS 179
                           +       ++     E       EY   DV     +   LE   
Sbjct: 126 ----------------DVSISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRL 169

Query: 180 S 180
            
Sbjct: 170 E 170


>gi|218442029|ref|YP_002380358.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424]
 gi|218174757|gb|ACK73490.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424]
          Length = 648

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/388 (15%), Positives = 113/388 (29%), Gaps = 69/388 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-----GFDDHPVELWDCVHDPVMPQV 56
            TL++D E              Y  +  + L          +++ V + D +  P + Q 
Sbjct: 21  KTLWLDTE----------IADWYTPNPRLSLIQILTNPKNIEENNVYVLDVLDKPDLIQD 70

Query: 57  LK-EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
              + ++N  +  V HN+ F+             +    CTL +A+  G          +
Sbjct: 71  FINQIMKNPQIEKVFHNASFDI----KYLGGKEEVKNVTCTLKIAKKIGKH--------S 118

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L + + K+   K L    C     E     +         L   Y K DV     +   L
Sbjct: 119 LNVPNLKL---KTLAEYLCNLPIVEDQQASDWGKRPL-TELQLNYAKMDVVYLANVHHYL 174

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK--LDQELESLTYGLVSSS 233
             L+S +    +  +         +  L + L+        +      L   +   +   
Sbjct: 175 LTLNSDKTPPIFTPEVGE------NQELFNHLSAKFIEYLIQDPQIPTLFESSPDQLQLE 228

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
               +L+  L+                 +         QA Q+       S   +     
Sbjct: 229 TIASQLQKILYQSIFFPY----------LQEKITTEPHQAPQLQKTWQSLSHL-IKYWTE 277

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L+ A     R   +            S  +    N P PS   E++ Q +  +  +    
Sbjct: 278 LLIA----NRYHYS-----------PSELLPKTLNSP-PSPIDEKIGQNLVSILNAFGIK 321

Query: 354 PDPLQIISDC--VRSCVIASEGKKLVVA 379
            D +  I+    +R  +    G K+V  
Sbjct: 322 VDYVGAIAAPAFIRVKLKPYPGVKVVSI 349


>gi|254261387|ref|ZP_04952441.1| 38L [Burkholderia pseudomallei 1710a]
 gi|254220076|gb|EET09460.1| 38L [Burkholderia pseudomallei 1710a]
          Length = 800

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/442 (10%), Positives = 116/442 (26%), Gaps = 103/442 (23%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL----------NTLVEAMNSDGRLRG 306
           +    V+ +        ++   N  +  +                  ++  +  DG +  
Sbjct: 382 SVSSDVIEALGNRDIPFLKTLANVAKLGKDLGTYYVTTDEKTGVQKGMLTLVGDDGIIHQ 441

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
            +    ++ T R+S      QN+                                  V+S
Sbjct: 442 KIN-HTSTVTARFSEQDPNLQNV---------------------------SGAGKSQVKS 473

Query: 367 CVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
             ++      ++V +D   +E  + A ++G +  ++    G D++    ++   +     
Sbjct: 474 VFVSRWLADGQVVQSDFTSLEIFIQAILSGCKQLIEDLRAGLDMHCVRVSQKEGITYED- 532

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
                                     +    G + +     +       +     +F R 
Sbjct: 533 -------------------------AVLKCKG-DPSRGVAPLPEWEKKRKGAKEFSFQRA 566

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                   A     +    + + KA   ++  +S        A +         I + RR
Sbjct: 567 YGAGAAGIAASTGMLLEDVQALIKAEEARYPELSAY-----NAAKT------ERIKKSRR 615

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK------LT 598
               +    D   L+  L  G            SY  +   +   +     +      + 
Sbjct: 616 PTNNIQPHPDVKGLMCQLGKG--YSITPDNKVYSYRESPAPKWLVQQGGMPQSFSPTEIA 673

Query: 599 ENIVQAVSRDILAEGM-MNATKAGYD--------IVLTVHDEIVCETPDTDE-FNASMLY 648
              VQ    +     M +                +V  VHD +  +   +    ++++L+
Sbjct: 674 NYEVQGTGGEWAKAAMWLAIRAFYARKNFNGLALLVNQVHDALYKDAHKSVLFESSALLH 733

Query: 649 HLMTSN---PSWAKG----LPL 663
             M +      W  G    +P+
Sbjct: 734 ACMLAASDFIEWYFGWKIPVPV 755



 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 67/244 (27%), Gaps = 35/244 (14%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE-RTVLKACF 84
           E+  V+   +      V        P       + L      +V  N  F+    L+   
Sbjct: 11  ENFVVVS-GWKRKGGDVMADYFGRGPRPFDWFTKLL-KETTLLVGVNIKFDLLHALREPQ 68

Query: 85  NLD------IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           NLD                +          ++     L +    +  G  +     K + 
Sbjct: 69  NLDAWMEFVARGGNVWDCQLAEYLL---RGMEPTSHMLSMDEMVVSYGGNV-----KIDE 120

Query: 139 HECLYDRNKPNHREAWRLFGEYCK------GDVTVTREIF--KRLEPLSSKEQELWYLDQ 190
            + L++           L   Y        GD+  T +IF  +  +   S + +   L+ 
Sbjct: 121 VKALWEAGVDTPDIDKDLILRYLCGDESGLGDIGNTEKIFLGQLAKARKSGQVKSILLNM 180

Query: 191 -------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL---VSSSRCLEKLK 240
                   +   G  VD AL   L   ++   T +  EL +          +      L 
Sbjct: 181 GSLLCTVEMERNGMYVDKALGLRLAAELEERLTAITAELRAYLPDDCPFDFNWSNRYHLS 240

Query: 241 TWLF 244
             +F
Sbjct: 241 PLIF 244


>gi|282899306|ref|ZP_06307275.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195763|gb|EFA70691.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 209

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 62/202 (30%), Gaps = 26/202 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET         G+    +   + L      +  V              L++ LE+
Sbjct: 27  LAVDTET--------MGLLPQRD--RLCLVQLCNPEGKVTAVRIAKGQTHAPNLQQLLES 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           TDV  V H + F+   L+    + +      CT + ++     +    +           
Sbjct: 77  TDVVKVFHFARFDLATLRHNLKIHVQP--VFCTKIASKLARTYTNRHGL----------- 123

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              KEL+    + E  +     +  N          Y   DV     + ++L  +  +E+
Sbjct: 124 ---KELVQELEQVELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQREE 180

Query: 184 ELWYLDQTINDRGYCVDVALAH 205
                 +  +     V + L  
Sbjct: 181 RWQLAQECFSFLPTLVSLDLLQ 202


>gi|154250652|ref|YP_001411476.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
 gi|154154602|gb|ABS61819.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1]
          Length = 203

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 16/130 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+    +   + +      D    +            L+  + +
Sbjct: 20  VAVDTET--------MGLHPERD--QLCVVQLSAGDGNAHIVQLDRGTYNAPRLRALMAD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             +  + H + F+  +L+    +        CT + ++          LK +   L  + 
Sbjct: 70  PAILKIFHFARFDVAMLQRYLGVVTAP--VYCTKIASKLVRTYTDRHGLKDLARELVNID 127

Query: 120 SQKMEEGKEL 129
             K ++  + 
Sbjct: 128 MSKQQQSSDW 137


>gi|86605802|ref|YP_474565.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554344|gb|ABC99302.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab]
          Length = 210

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 26/201 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET   I           +   + +         V L            L   L +
Sbjct: 27  LAVDTETMGLIP----------QRDRLCVVQIANAAGEVVLLRLSRGVKQAPHLARLLTD 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            ++  + H + F+  +L+    +        CT + ++          +           
Sbjct: 77  PNIEKIFHYARFDLAMLRYHLGI--QAWPVFCTKIASK----------LARTY----TSK 120

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+++   C  E ++     +  N +       EY   DV     +  +L  +  +E+
Sbjct: 121 HSLKDVVGELCGVELNKTAQSSDWGNVQALSPEQLEYAANDVRYLIPVRHKLAQMLQREE 180

Query: 184 ELWYLDQTINDRGYCVDVALA 204
                 +        V++ L 
Sbjct: 181 RWELAQRCFQHLPTLVELDLL 201


>gi|76810071|ref|YP_333053.1| hypothetical protein BURPS1710b_1649 [Burkholderia pseudomallei
           1710b]
 gi|76579524|gb|ABA48999.1| 38L [Burkholderia pseudomallei 1710b]
          Length = 774

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/442 (10%), Positives = 116/442 (26%), Gaps = 103/442 (23%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL----------NTLVEAMNSDGRLRG 306
           +    V+ +        ++   N  +  +                  ++  +  DG +  
Sbjct: 356 SVSSDVIEALGNRDIPFLKTLANVAKLGKDLGTYYVTTDEKTGVQKGMLTLVGDDGIIHQ 415

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
            +    ++ T R+S      QN+                                  V+S
Sbjct: 416 KIN-HTSTVTARFSEQDPNLQNV---------------------------SGAGKSQVKS 447

Query: 367 CVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
             ++      ++V +D   +E  + A ++G +  ++    G D++    ++   +     
Sbjct: 448 VFVSRWLADGQVVQSDFTSLEIFIQAILSGCKQLIEDLRAGLDMHCVRVSQKEGITYED- 506

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
                                     +    G + +     +       +     +F R 
Sbjct: 507 -------------------------AVLKCKG-DPSRGVAPLPEWEKKRKGAKEFSFQRA 540

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                   A     +    + + KA   ++  +S        A +         I + RR
Sbjct: 541 YGAGAAGIAASTGMLLEDVQALIKAEEARYPELSAY-----NAAKT------ERIKKSRR 589

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK------LT 598
               +    D   L+  L  G            SY  +   +   +     +      + 
Sbjct: 590 PTNNIQPHPDVKGLMCQLGKG--YSITPDNKVYSYRESPAPKWLVQQGGMPQSFSPTEIA 647

Query: 599 ENIVQAVSRDILAEGM-MNATKAGYD--------IVLTVHDEIVCETPDTDE-FNASMLY 648
              VQ    +     M +                +V  VHD +  +   +    ++++L+
Sbjct: 648 NYEVQGTGGEWAKAAMWLAIRAFYARKNFNGLALLVNQVHDALYKDAHKSVLFESSALLH 707

Query: 649 HLMTSN---PSWAKG----LPL 663
             M +      W  G    +P+
Sbjct: 708 ACMLAASDFIEWYFGWKIPVPV 729



 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 59/209 (28%), Gaps = 33/209 (15%)

Query: 61  LENTDVTIVAHNSYFE-RTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVG 113
           L      +V  N  F+    L+   NLD                +          ++   
Sbjct: 18  LLKETTLLVGVNIKFDLLHALREPQNLDAWMEFVARGGNVWDCQLAEYLL---RGMEPTS 74

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK------GDVTV 167
             L +    +  G  +     K +  + L++           L   Y        GD+  
Sbjct: 75  HMLSMDEMVVSYGGNV-----KIDEVKALWEAGVDTPDIDKDLILRYLCGDESGLGDIGN 129

Query: 168 TREIF--KRLEPLSSKEQELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKL 218
           T +IF  +  +   S + +   L+         +   G  VD AL   L   ++   T +
Sbjct: 130 TEKIFLGQLAKARKSGQVKSILLNMGSLLCTVEMERNGMYVDKALGLRLAAELEERLTAI 189

Query: 219 DQELESLTYGL---VSSSRCLEKLKTWLF 244
             EL +          +      L   +F
Sbjct: 190 TAELRAYLPDDCPFDFNWSNRYHLSPLIF 218


>gi|73667429|ref|YP_303445.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
 gi|72394570|gb|AAZ68847.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
          Length = 216

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 36/205 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET          +        + L         V L     +   P  L   L +
Sbjct: 32  VAIDTET----------MGLVCRRDRLCLVQLADSSGNVHLVKFSGNYQAP-NLVSVLSD 80

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119
            ++  + H + F+  V++    +        CT + ++          LK +  E L + 
Sbjct: 81  PNIIKIFHFARFDIAVMRYYLGMWANP--CYCTKIASKLVRTYTDHHGLKELCYELLGVK 138

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             KM++  +        E                      Y   DV     +  +L+ + 
Sbjct: 139 LNKMQQSSDWGRESLTSEQLN-------------------YAASDVIYLHALKSKLDAML 179

Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204
            +E +                + L 
Sbjct: 180 QRENKRELAAACFKFLQTRAQLDLL 204


>gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1430

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/422 (11%), Positives = 103/422 (24%), Gaps = 111/422 (26%)

Query: 256  ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFL 311
            +   + VL+S      +   +   R    R     L       +  ++ DGR+   +  +
Sbjct: 1019 KVFSETVLASLHAHGVKPAGLLLQRQLLDRHTSTFLQPSTGGRLAILHRDGRVHQHI-DM 1077

Query: 312  GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             A+ T R        QN+P+  +S                            VR   ++ 
Sbjct: 1078 TATTTSRTVSAYPSCQNIPKDDKS---------------------------SVRRLFVSR 1110

Query: 372  EGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
             G K   V  D + +E  VLA +  +    K   +G D +V   A    +   +      
Sbjct: 1111 FGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDE------ 1164

Query: 430  AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
                       YQG  +   K                       +     +F R      
Sbjct: 1165 ----------IYQGYKRNVPKYVK------------------LRKTAKQFSFQRLYGAGV 1196

Query: 490  PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            P             E   +   +++  +++    +     +    G              
Sbjct: 1197 PLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNPGLPTSFI-------- 1248

Query: 550  YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                        +P+G  +                 +          +    +Q    ++
Sbjct: 1249 ----------AEMPTGLRMSL---------------RTRDVVLNLPPIKNYPIQGYGAEL 1283

Query: 610  LAEGMMNATKA---------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAK 659
                +    +             ++  VHD +  +          +    ++ S   +  
Sbjct: 1284 AQMMLGRLYRHFVRRDFYEDRAFLINFVHDSVWMDCHVDVLRECVTDTCRILGSVHEYVP 1343

Query: 660  GL 661
             +
Sbjct: 1344 KV 1345


>gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5]
 gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania
            infantum JPCM5]
          Length = 1430

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/422 (11%), Positives = 103/422 (24%), Gaps = 111/422 (26%)

Query: 256  ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN----TLVEAMNSDGRLRGTLQFL 311
            +   + VL+S      +   +   R    R     L       +  ++ DGR+   +  +
Sbjct: 1019 KVFSETVLASLHAHGVKPAGLLLQRQLLDRHTSTFLQPSTGGRLAILHRDGRVHQHI-DM 1077

Query: 312  GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
             A+ T R        QN+P+  +S                            VR   ++ 
Sbjct: 1078 TATTTSRTVSAYPSCQNIPKDDKS---------------------------SVRRLFVSR 1110

Query: 372  EGKK--LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
             G K   V  D + +E  VLA +  +    K   +G D +V   A    +   +      
Sbjct: 1111 FGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRAAFFSGLPYDE------ 1164

Query: 430  AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
                       YQG  +   K                       +     +F R      
Sbjct: 1165 ----------IYQGYKRNVPKYVK------------------LRKTAKQFSFQRLYGAGV 1196

Query: 490  PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            P             E   +   +++  +++    +     +    G              
Sbjct: 1197 PLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNNPGLPTSFI-------- 1248

Query: 550  YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                        +P+G  +                 +          +    +Q    ++
Sbjct: 1249 ----------AEMPTGLRMSL---------------RTRDVVLNLPPIKNYPIQGYGAEL 1283

Query: 610  LAEGMMNATKA---------GYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSNPSWAK 659
                +    +             ++  VHD +  +          +    ++ S   +  
Sbjct: 1284 AQMMLGRLYRHFVRKDFYEDRAFLINFVHDSVWMDCHVDVLRECVTDTCRILGSVHEYVP 1343

Query: 660  GL 661
             +
Sbjct: 1344 KV 1345


>gi|282897776|ref|ZP_06305775.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
 gi|281197455|gb|EFA72352.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
          Length = 209

 Score = 72.5 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 61/202 (30%), Gaps = 26/202 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET   +           +   + L      +  V              L++ LE+
Sbjct: 27  LAVDTETMGLVP----------QRDRLCLVQLCNPEGKVTAVRIAKGQTHAPNLQQLLES 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           T V  V H + F+   L+    + +      CT + ++     +    +           
Sbjct: 77  THVVKVFHFARFDLATLRHNLKIYVQP--VFCTKIASKLARTYTNRHGL----------- 123

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              KEL+    + E  +     +  N          Y   DV     + ++L  +  +E+
Sbjct: 124 ---KELVQELEQLELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQREE 180

Query: 184 ELWYLDQTINDRGYCVDVALAH 205
               + +  +     V + L  
Sbjct: 181 RWQLVQECFSFLPTLVSLDLLQ 202


>gi|299133324|ref|ZP_07026519.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
 gi|298593461|gb|EFI53661.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
          Length = 204

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 58/208 (27%), Gaps = 35/208 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            LK+ L +
Sbjct: 20  VAIDTET--------LGLNPHRD--RLCVVQLSNGDGSADVVQIPAGHTDAPNLKKLLGD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             +T + H + F+  VL   F +        CT + ++          LK +   +    
Sbjct: 70  PAITKLFHFARFDIAVLYHAFGVMAQP--VYCTKIASKLVRTYTDRHGLKDLVREM---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +        +    +        Y   DV     +  +L+ + +
Sbjct: 124 --------LGVEISKQQQSSDWGAASLSEAQ------LSYAASDVLHLHALRDKLDAMLA 169

Query: 181 KEQELWYLDQTIND--RGYCVDVALAHT 206
           +E                  +D+     
Sbjct: 170 REDREPLAKACFEFLPTRARLDLQGWEE 197


>gi|239830972|ref|ZP_04679301.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823239|gb|EEQ94807.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 205

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 48/181 (26%), Gaps = 35/181 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L + L++
Sbjct: 21  VAIDTET--------LGLNPHRD--RLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             +T + H   F+  VL   F          CT + ++          LK +   L    
Sbjct: 71  RSITKIFHFGRFDLAVLAHTFG--TMPQPVFCTKIASKLTRTYTDRHGLKELCNELL--- 125

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF-GEYCKGDVTVTREIFKRLEPLS 179
                           +       ++     E       EY   DV     +   LE   
Sbjct: 126 ----------------DVSISKQQQSSDWAAETLSAAQLEYAASDVLYLHRLKAVLEQRL 169

Query: 180 S 180
            
Sbjct: 170 E 170


>gi|159046129|ref|YP_001534923.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
 gi|157913889|gb|ABV95322.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12]
          Length = 203

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 53/200 (26%), Gaps = 35/200 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET   +          A D  + +      D    +            L   L 
Sbjct: 19  VVAIDTETMGLVP---------ARD-RLCVVQLSSGDGDAHMVQIAQGQTEAPNLTRMLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKA-VGEALKL 118
           +  V  + H + F+   L+  F   +      CT + ++          LKA + E L +
Sbjct: 69  DPKVLKLFHYARFDVAALENAFG--VRTAPIYCTKIASKLVRTYTDRHGLKALLSEVLGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                              +Y   DV     + + L+ +
Sbjct: 127 DVSKAQQSSDWG-------------------APTLSAAQLDYAASDVLYLHRLKEALDGM 167

Query: 179 SSKEQELWYLDQTINDRGYC 198
            ++E                
Sbjct: 168 LAREGRTELAQACFEFLPTR 187


>gi|113475312|ref|YP_721373.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
 gi|110166360|gb|ABG50900.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
          Length = 207

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 54/201 (26%), Gaps = 26/201 (12%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            +D ET   +               + L         V              LK+ +E  
Sbjct: 26  AVDTETMGLLP----------RRDRLCLVQLCDPLGQVTAIRIHKGQQEAPNLKQLMEAN 75

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
            +  V H + F+  +L+    + +      CT + ++          +            
Sbjct: 76  SIVKVFHFARFDVAMLQHYLGIKVSP--IFCTKISSK----------LARTY----TGKH 119

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
             K+L+    K E  +     +  N          Y   DV     + ++L  +  +E+ 
Sbjct: 120 GLKDLVMELEKVELDKSSQSSDWGNAENLTEKQLNYAANDVRYLLSVREKLSKILKREER 179

Query: 185 LWYLDQTINDRGYCVDVALAH 205
                Q        V + L  
Sbjct: 180 WELAQQCFECLPVFVGLDLLQ 200


>gi|85714031|ref|ZP_01045020.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A]
 gi|85699157|gb|EAQ37025.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A]
          Length = 206

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 52/190 (27%), Gaps = 27/190 (14%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            ID ET         G+  + +   + +      D   ++            LK+ L + 
Sbjct: 23  AIDTET--------MGLKPHRD--RLCVVQMSPGDGSADVIQIARGQHDAPNLKKLLGDP 72

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
            +  + H + F+   L   F   +      CT + +R                L   K  
Sbjct: 73  AIVKIFHFARFDLAALHNAFG--VMPRPVYCTKIASRL---TRTYTD---RHGL---KDL 121

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
             + L     K +           + + A      Y   DV     +  +L+ + ++E  
Sbjct: 122 VREALSIDLSKQQQSSDWGSLALSDAQLA------YAASDVLHLHALRDKLDAMLAREDR 175

Query: 185 LWYLDQTIND 194
                     
Sbjct: 176 TGLAQACFEF 185


>gi|162456960|ref|YP_001619327.1| pseudogene [Sorangium cellulosum 'So ce 56']
 gi|161167542|emb|CAN98847.1| pseudogene [Sorangium cellulosum 'So ce 56']
          Length = 101

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 614 MMNATKA---GYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKAEGYE 669
           M+   +    G  +VLTVHDE+  E P      A   +   M S       +PL  +   
Sbjct: 1   MVRVPRPVVPGARMVLTVHDELAFEVPAEAVDEAKAKVREAMESVFP--LDVPLVVDVGH 58

Query: 670 SKRY 673
              +
Sbjct: 59  GPTW 62


>gi|49475064|ref|YP_033105.1| ribonuclease d [Bartonella henselae str. Houston-1]
 gi|49237869|emb|CAF27065.1| Ribonuclease d [Bartonella henselae str. Houston-1]
          Length = 206

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 53/206 (25%), Gaps = 31/206 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           +  + +D ET         G+  + +   + +      D   ++            L   
Sbjct: 19  IDAVAVDTET--------LGLQPHRD--RLCVVQLSSGDGTADVIQIAKGQKSAPNLVRL 68

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L + D+T + H   F+  +L   F   +      CT + ++                  +
Sbjct: 69  LSDRDITKIFHFGRFDLAILAHTFG--VMPDVVFCTKIASKL-----------------T 109

Query: 121 QKMEEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREIFKRLEPL 178
           +   +   L     +         +       E       EY   DV     +    E  
Sbjct: 110 RTYTDRHGLKEICGELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHRLKDIFEER 169

Query: 179 SSKEQELWYLDQTINDRGYCVDVALA 204
             +E+                ++ L 
Sbjct: 170 LKREERESVAKACFQFLPMRANLDLL 195


>gi|257059023|ref|YP_003136911.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802]
 gi|256589189|gb|ACV00076.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802]
          Length = 210

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 60/213 (28%), Gaps = 35/213 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET   I           +   + L         V              LK+ +E 
Sbjct: 28  IAVDTETMGLIP----------QRDRLCLVQLCDPSGFVTAIRIERGQKEAPKLKQLMEA 77

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             +  V H + F+   L+  F ++       CT + ++          LK++ + L  + 
Sbjct: 78  KTILKVFHYARFDVAQLRYHFGIETQP--IFCTKIASKLARTYTSSHGLKSLVQELEGIE 135

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                 N    +        Y   DV       ++L  + 
Sbjct: 136 LDKTSQSSDW------------GNSANLSVAQ------LSYAANDVRYLIPAKEKLITML 177

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            +E+     +Q  N     V +        I +
Sbjct: 178 QREERWQLAEQCFNCIPVFVSLD-LEQYKDIFE 209


>gi|291301867|ref|YP_003513145.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728]
 gi|290571087|gb|ADD44052.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728]
          Length = 548

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/462 (12%), Positives = 103/462 (22%), Gaps = 145/462 (31%)

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
              +    +++    F + G  +E       + +        P    +       SR   
Sbjct: 215 HPFNPDSPQQVLA-AFRKAGHPIETTRAWELKTI------DHPAVPPLLRY-KELSRVHS 266

Query: 289 LKLNTLVEAMNSDG---------RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                 +     DG         R R     +G   TGRW+        +P+        
Sbjct: 267 AHGWNWLSEWVGDGPGGPDSPAKRFRPRY-VVGGVVTGRWATDGGAALQIPK-------- 317

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                                   +R+   A  G KLVVAD A +E R+LA M+ +   +
Sbjct: 318 -----------------------VIRAAATADAGHKLVVADAAQLEPRMLAAMSQDPGMI 354

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
            A E  +           +              K+  L+  Y G A     + +      
Sbjct: 355 AAAEADDMYAALAPTFDGSRD----------DAKIALLSAMYGGTAGNATALLTVM---- 400

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
                          +  A  +      +  +  +   ++G         W         
Sbjct: 401 ------------RRRFPTAYAYVEQAARDGEKGGLVRTWLGRTSPAPGDGWWN------- 441

Query: 520 LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSY 579
                       +       + + R                 L     L           
Sbjct: 442 -----------ALTGPGGTRSARDRGRFTRNFVVQGTAAEWALSMMALLR---------- 480

Query: 580 LNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
               +R   R                                 D+V   HDEI+     +
Sbjct: 481 ----SRLWER------------------------------ELGDLVFFQHDEIIVHCEQS 506

Query: 640 DEFNAS-MLYHLMTSNPSWAKG-----LPLKAEGYESKRYRK 675
                + ++            G     +PL A       Y K
Sbjct: 507 RAETVAGLIQECADQATRLLFGRLSMRVPLSAA--IVDSYDK 546


>gi|332671808|ref|YP_004454816.1| DNA-directed DNA polymerase [Cellulomonas fimi ATCC 484]
 gi|332340846|gb|AEE47429.1| DNA-directed DNA polymerase [Cellulomonas fimi ATCC 484]
          Length = 567

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 65/479 (13%), Positives = 108/479 (22%), Gaps = 137/479 (28%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIV----------DVERTKLDQELESLTYGLVSSSRCL 236
            + Q +   G   DV +   L   +                L   +         +    
Sbjct: 178 LIAQEMRHDGMPWDVTVHDALLTDLLGPRPRGGGRPARLEALVARIREELVQPTLNPDSQ 237

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
             L   L L  G  +   ++          + +      V       SR         ++
Sbjct: 238 PDLLRGLRLA-GFDVASTSKW-------EIRGIDHPVRDVLLEYKTLSRLLSANGWAWMD 289

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
               DGR R      G   +GRW+        LP   R+    D                
Sbjct: 290 TWIHDGRFRPEY-VPGGVVSGRWATSGGGALQLPAAVRAAVRADD--------------- 333

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                           G +LVVAD A +E RVLA M+G+     A    +       A  
Sbjct: 334 ----------------GWRLVVADAAQLEPRVLAAMSGDGAMAAAGRQADLYQGVVDAGI 377

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
                           K   L   Y           +TTG +      L           
Sbjct: 378 VATRSD---------AKYAMLGAIY----------GATTGASAALMPQLT---------- 408

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                                              + + +   L     +A  +  E G+
Sbjct: 409 -----------------------------------RAYPQAVAL----VEAAARAGERGE 429

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
           A+     R  P                              +          R   +G  
Sbjct: 430 AVTTWLGRSSPTPDAAWQAE-------------LSAASAEGAAAEDVRAVRRRARDWGRF 476

Query: 597 LTENIVQAVSRDILAEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASMLYH 649
               +VQ  + +     M +  +          +V  +HDE++  +P       +    
Sbjct: 477 TRNFVVQGTAAEWALCWMASLRRRLRDVPGRPHLVFFLHDEVMVHSPAPVAEEVAQAVR 535


>gi|167841478|ref|ZP_02468162.1| 38L [Burkholderia thailandensis MSMB43]
          Length = 787

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/517 (10%), Positives = 129/517 (24%), Gaps = 98/517 (18%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                +    +  +          +         D      L +     + K + + + +
Sbjct: 279 DAEGNLQYYAKKETHYLLADGSTMECAEYEKRTDDGMPVEPLVK-FAGGKNKGEPKTKQV 337

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLT--------ETTCQRVLSSNKKLTPQAIQVF 277
           T           +++   +   G    D           +T   V+ +        +   
Sbjct: 338 TVPDKER-GPKTRIEDHFYTFEGYTTGDKKWESSEPGVYSTAGDVIEALGNRGIPFLDAM 396

Query: 278 NNRMRASRSAVLK---LN-------TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                 ++         +        ++  +  D  +   L     + TGR S      Q
Sbjct: 397 ARVQALTKDLGTYFIRYDEKKKAHVGMLTLVQLDSIVHHMLN-HTNTVTGRLSSSNPNLQ 455

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
           NL +  +S  +                                 E   ++ +D + +E  
Sbjct: 456 NLSKGQKSRVKEVFESRW-------------------------GEDGVIIQSDFSSLEVY 490

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           V A +   +  ++  ++G+D++    A        +V  +   I    E           
Sbjct: 491 VQAILTKAEKLIEDLKSGKDMHCVRLAAKEGKTYEEVF-ELCKIIADPE----------- 538

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                                           +F R     +   A          E + 
Sbjct: 539 ---------------------WDYKRTGAKVFSFQRAYGAGNKTIAESTGMPLEEVEALA 577

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
           +A  +++  V   + +  +  + + E      A      P               P G+ 
Sbjct: 578 QAEDERYHEVPAYFEKKTEEIKASRE-----PAGIWLIHPANGADVQLGVGHSRTPGGKL 632

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM-MNAT-------- 618
             Y++       +    R + R +    ++    VQ    +I   GM +           
Sbjct: 633 YTYKETLAPDFLVK---RGILRNFMPT-EIKNYEVQGEGGEIAKAGMWLTVRAFYTYENF 688

Query: 619 KAGYDIVLTVHDEIVCETPDTDE-FNASMLYHLMTSN 654
           K    +V  VHD    +         A++L+  M+  
Sbjct: 689 KMLALLVNQVHDAEYADAHKKVATKAAALLHACMSEA 725



 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 61/231 (26%), Gaps = 40/231 (17%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVL--------------KACFNLDIPIHRWICTLVLAR 101
              + LE T +    HN  F+  VL              KA             T +   
Sbjct: 52  WFVDLLEGTKILA-GHNIKFD--VLYALGNPNSNREANRKAWMKWVAEGGLVWDTQLAEY 108

Query: 102 SN----GLPSALKAVGEALKLSSQ-KMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                      L     A++     K++E K +   + +G     +      ++   + +
Sbjct: 109 LLKGQAQEAHMLDLGTTAIEHGGNAKLDEVKLM---WAQGVDTIDIPRDKLMDYLVGFEV 165

Query: 157 FGEYCKGDVTVTREIFKRLE---------PLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
            GE+  GD+  T  IF+                               G  V+  LA  L
Sbjct: 166 NGEWEHGDIGNTELIFRSQYLIANKRGQLRSIFMNMGALIYTIECELNGMFVNQTLAKEL 225

Query: 208 NQIVDVERTKLDQELESLTYGL---VSSSRCLEKLKTWLF---LETGLHLE 252
            + V+ E      E+ S          +          +F   ++      
Sbjct: 226 AKEVEEELAAKLVEVNSYIPADLPFEFNWNSRFHKSALIFGGNVKYKAPAP 276


>gi|207110463|ref|ZP_03244625.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 103

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 27/107 (25%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           L+   + D ++  T    G + TGR S      QN+P  S                    
Sbjct: 1   LLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIPVRSPKGL---------------- 43

Query: 354 PDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKL 399
                     +R   IA S+   L+  D + IE R+LA  + ++  +
Sbjct: 44  ---------LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLM 81


>gi|148272793|ref|YP_001222354.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830723|emb|CAN01663.1| putative DNA polymerase I [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 556

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 84/582 (14%), Positives = 138/582 (23%), Gaps = 148/582 (25%)

Query: 93  WICTLVLARSNGLP-------SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           W  T   AR+             L+     L+LS+Q      EL              +R
Sbjct: 52  WDDTAAWARTLIAAGVRVARCHDLRLCHAILRLSTQ--TADSELARLPAGPWDRAAPSER 109

Query: 146 NKPNHREAWRLFGEYCKG---DVTVTREIF----------KRLEPLSSKEQELWYLDQTI 192
                   +            ++     +            RL  L + E     +   +
Sbjct: 110 EPSASATLFDDLDTSDGRSPDELVAELRLQLEAVAASAEPGRLRLLLAAESAGALVAAEM 169

Query: 193 NDRGYCVDVALAHTLNQIVDV----------ERTKLDQELESLTYGLVSSSRCLEKLKTW 242
           +  G   D ++   L   +               +L   +  +      +      +   
Sbjct: 170 SADGLPWDTSVHDALLVDLLGGRPAHGGAPPALLRLAARVREILRAPDLNVDSPPDVLRA 229

Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
           L    G+       +T Q  L       P    +  ++   SR       T +E    DG
Sbjct: 230 L-RRAGID----AASTRQWELQEI--DHPVIASLLEHKR-LSRLLTANGWTWMETWIRDG 281

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           R        G   TGRW+        LPR                               
Sbjct: 282 RFHPEY-VPGGVVTGRWAASGGGALQLPR------------------------------- 309

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +RS V A  G +LVVAD A +E RVLA +A ++    A    +       A        
Sbjct: 310 QIRSAVRADRGWRLVVADAAQLEPRVLAALAEDRAMADAGRGTDLYQGLVDAGVV----- 364

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
               D RA  KV  L   Y   +                             +  A  + 
Sbjct: 365 ----DTRAHAKVAMLGAMYGATSG----------------ESGRLMPRLVRAYPRATGYV 404

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                     A+    +G +      AW      V ++      +         +   + 
Sbjct: 405 ERAARAGESGAVVSTRLGRSSPPPGDAWVD----VQQIGRAGEASSADAARARTSARDQG 460

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           R     V         +  L   R                                    
Sbjct: 461 RFTRNFVVQGSAAEWALCWLAGLRRR---------------------------------- 486

Query: 603 QAVSRDILAEGMMNATKAGYD--IVLTVHDEIVCETPDTDEF 642
             ++            + G    +V  +HDE++   PD    
Sbjct: 487 --LAA---------MERPGSRPHLVFFLHDEVMVHAPDDRVD 517


>gi|39933126|ref|NP_945402.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
 gi|39652751|emb|CAE25490.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009]
          Length = 204

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 33/184 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            LK+ L +
Sbjct: 20  VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGATDAPNLKKLLGD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             V  + H + F+   L   F   +      CT + +R          LK +   L    
Sbjct: 70  PAVVKIFHFARFDLAALYKTFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +        +  + + A      Y   DV     +  RL+ + +
Sbjct: 124 --------LGIDLSKQQQSSDWGADSLSDAQLA------YAASDVLHLHALRDRLDTMLA 169

Query: 181 KEQE 184
           +E  
Sbjct: 170 RENR 173


>gi|218508865|ref|ZP_03506743.1| ribonuclease III protein [Rhizobium etli Brasil 5]
 gi|327190020|gb|EGE57137.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 208

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 48/208 (23%), Gaps = 27/208 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++            L   LE+
Sbjct: 24  VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H   F+  VL   F +        CT + +R                L   K 
Sbjct: 74  PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRL---SRTYTD---RHGL---KD 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L     K +             +       EY   DV     +  +L     ++ 
Sbjct: 123 NLKEMLDVDISKTQQSSDWAAETLSQAQ------LEYAASDVLYLHALRDKLTARLIRDG 176

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211
              +             + L       +
Sbjct: 177 RFDHATACFAFLPTRAKLDLLGWEEADI 204


>gi|218245974|ref|YP_002371345.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801]
 gi|218166452|gb|ACK65189.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801]
          Length = 210

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 60/213 (28%), Gaps = 35/213 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET   I           +   + L         V              LK+ +E 
Sbjct: 28  IAVDTETMGLIP----------QRDRLCLVQLCDPSGFVTAIRIERGQKEAPKLKQLMEA 77

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             +  V H + F+   L+  F ++       CT + ++          LK++ + L  + 
Sbjct: 78  KTILKVFHYARFDVAQLRYHFGIETQP--IFCTKIASKLARTYTSSHGLKSLVQELEGIE 135

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                 N    +        Y   DV       ++L  + 
Sbjct: 136 LDKTSQSSDW------------GNSANLSVAQ------LSYAANDVRYLIPAKEKLITML 177

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            +E+     +Q  N     V +        I +
Sbjct: 178 QREERWQLAEQCFNCIPVFVSLD-LEQYKDIFE 209


>gi|217976351|ref|YP_002360498.1| 3'-5' exonuclease [Methylocella silvestris BL2]
 gi|217501727|gb|ACK49136.1| 3'-5' exonuclease [Methylocella silvestris BL2]
          Length = 204

 Score = 72.1 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 46/180 (25%), Gaps = 33/180 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + L      D   +L            L   L +
Sbjct: 20  VAIDTETMGLVPGRD----------RLCLVQLSRGDGSADLVQIAPAQTAAPNLTRLLAD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             V  + H + F+  VL   F   +      CT + ++          LK +   L    
Sbjct: 70  PAVEKLFHFARFDIAVLYKTFG--VMTGPIYCTKIASKLARTYTDRHGLKDLAREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +             + A      Y   DV     +  +L+ +  
Sbjct: 124 --------LGIELSKQQQSSDWGGDILSEAQLA------YAASDVLHLHALRTKLDAMLE 169


>gi|311898817|dbj|BAJ31225.1| putative DNA polymerase [Kitasatospora setae KM-6054]
          Length = 562

 Score = 71.7 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 79/300 (26%), Gaps = 65/300 (21%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
            +  +L  E++        +     ++    F + G+ L        + V        P 
Sbjct: 213 AKLAELALEVQRALGARPFNLDSHTQVIK-AFADRGVQLSSTRSWELKAV------DHPA 265

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
           A  +       SR           A    GR R     +G   TGRW+        +PR 
Sbjct: 266 AALLVRY-KELSRLHAAHGWAWQAAWARGGRFRPEY-VVGGVVTGRWASRGGGALQIPRT 323

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R  V+A  G  LVVAD A +E RVLA +
Sbjct: 324 -------------------------------LRRAVVADPGWLLVVADAAQLEPRVLAAL 352

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+    +    G+       +              R   K+  L   Y         + 
Sbjct: 353 SGDAGLARTAAGGDLYAALAASAFHG---------DREQAKLGLLGAMYGQTGGGIGPLL 403

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           +T                    + DA  +         +  +    +G  C      W  
Sbjct: 404 NTL----------------RRRYPDAMGYVEAAARTGEDGGVVASRLGRVCPPPSADWLD 447



 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 49/203 (24%), Gaps = 40/203 (19%)

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
            +    ++   GL        +    A   +          Q             G    
Sbjct: 346 PRVLAALSGDAGLARTAAGGDLYAALAASAFHGDRE-----QAKLGLLGAMYGQTGGGIG 400

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
            +    R+++           +A  +T E+G  + +R  R  P               PS
Sbjct: 401 PLLNTLRRRYPDAMGY----VEAAARTGEDGGVVASRLGRVCPP--------------PS 442

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN-------A 617
              L   +   +      + R   R           ++Q    D     +          
Sbjct: 443 ADWLDLTEAPESGEAGGRSARARGR------FTRNFVIQGSGADWALALLAALRRRLAVL 496

Query: 618 TKAGYDIVL---TVHDEIVCETP 637
              G    L     HDE+V  TP
Sbjct: 497 HSGGDRPHLVFFQ-HDEVVVHTP 518


>gi|239942253|ref|ZP_04694190.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|239988720|ref|ZP_04709384.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 11379]
 gi|291445710|ref|ZP_06585100.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
 gi|291348657|gb|EFE75561.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998]
          Length = 563

 Score = 71.7 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/383 (13%), Positives = 103/383 (26%), Gaps = 106/383 (27%)

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
           ++T +  L       P    +     +  R       + ++    +GR R      G + 
Sbjct: 242 KSTRRWELEEL--DHPAVEPLIAY-KKLYRIWTAHGWSWLQDWVREGRFRPEY-QPGGTV 297

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           +GRW+        +P+                                +R  V+A  G +
Sbjct: 298 SGRWTTNGGGALQIPK-------------------------------VIRQAVVADPGWR 326

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           LVVAD   +E RVLA ++ ++  ++      DLY             +     R   K+ 
Sbjct: 327 LVVADADQMEPRVLAAISRDRGLMEVAGHDGDLYKALS--------DRAFSGDREHAKLA 378

Query: 436 ELALGYQGGAK-AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
            L   Y   +    + +A+                     +  A  +         E  +
Sbjct: 379 LLGAVYGQTSGDGLKNLAAL-----------------RRRFPLAVAYVDDAARAGEEGRV 421

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKD 554
              ++G     V  A + + + + +   E          +G      + R      ++  
Sbjct: 422 VRTWLGRTSPPVVSAGQDEEAGIPQEAPEGAGDAGGPAGSGGGTARARGRFTRNFVVQGS 481

Query: 555 KNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
             +  L+L +G      +                              Q +         
Sbjct: 482 AADWALLLLAGLRRTLFE------------------------------QGL--------- 502

Query: 615 MNATKAGYDIVLTVHDEIVCETP 637
                    +V   HDE++   P
Sbjct: 503 ------RAQLVFFQHDEVIVHCP 519


>gi|220907657|ref|YP_002482968.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425]
 gi|219864268|gb|ACL44607.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425]
          Length = 217

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 56/208 (26%), Gaps = 34/208 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D ET         G+    +   + L         + +            LK+ L
Sbjct: 33  DRIAVDTET--------MGLKPQRD--RLCLVQLAHPQGLITVIRIGQGQRSAPHLKQLL 82

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEAL-K 117
           E+   T V H + F+ T L+   ++ +      CT + ++          LK +   L  
Sbjct: 83  EHPGTTKVFHFARFDITTLRYHLDIWVQP--LFCTKIASKLARTYSPRHGLKDLIRELEG 140

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K  +  +                 N             Y   DV        +L  
Sbjct: 141 VELDKTVQSSDW------------GNPNNLT------EEQLRYASNDVRYLLAAQAKLVE 182

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAH 205
           +  +E       +  +       + L  
Sbjct: 183 MLQRENRWQLAQECFHCLPTLASLDLLE 210


>gi|322786066|gb|EFZ12677.1| hypothetical protein SINV_07179 [Solenopsis invicta]
          Length = 136

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 29/100 (29%)

Query: 595 GKLTENIVQAVSRDILAEGMM----------------------------NATKAGYDIVL 626
            +     VQ  + DI+ + M+                            N  + G  +VL
Sbjct: 23  RQAVNTKVQGSAADIVKKAMISIEDKIRSYFPDSTVIFPEVHTTRKLRSNLQQRGGYLVL 82

Query: 627 TVHDEIVCETPDTDEFNAS-MLYHLMTSNPSWAKGLPLKA 665
            +HDE++ E    D    + ++   M +    +  LP+K 
Sbjct: 83  QLHDELLYEVNLVDLKQVAVIIKESMENVCQLSVPLPVKV 122


>gi|184200105|ref|YP_001854312.1| putative DNA polymerase [Kocuria rhizophila DC2201]
 gi|183580335|dbj|BAG28806.1| putative DNA polymerase [Kocuria rhizophila DC2201]
          Length = 588

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 66/550 (12%), Positives = 129/550 (23%), Gaps = 140/550 (25%)

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            +L AV E             ELIA      +           + +              
Sbjct: 140 GSLFAVAEEHGPGVT------ELIAELAAQTSACATAR-----NPQRLERLLSLESQGAL 188

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           V  ++  R  P +    +    D                   +       +L QE+ +  
Sbjct: 189 VAADMRHRGIPWNPAVHQQILEDMLGTRP-----------AGEERPARMQELAQEVRTAL 237

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV-----FNNRM 281
                +     +L   L    G+ ++       Q    +     PQ  +V          
Sbjct: 238 AAPALNPDSPVELLKALRNA-GVDVDTTRAFKLQEW--TLVNGQPQEQRVATVTPVLEYK 294

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           + SR         ++    +GR       +G   TGRW+        +P+          
Sbjct: 295 KLSRVFSATGWHWLDTWVHEGRFHPEY-VVGGVVTGRWAARGGGALQIPK---------- 343

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                                 +R  V A  G  LVVAD A +E RVLA +A +    +A
Sbjct: 344 ---------------------YIRDAVRADPGHALVVADAAQLEPRVLAILARDDALAEA 382

Query: 402 FETGEDLY-VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
               +    +    ++      + +       K+  L   Y   + A  +          
Sbjct: 383 SRGRDLYTAIAEQGQARGSELTERSH-----AKLALLGAMYGATSGAGGRFMPQL----- 432

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                         +  A  +                ++G         W +        
Sbjct: 433 -----------TRMFPRAVGYVEHAARVGELGHQVCTYLGRWSPAPGPEWFE-------- 473

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
              + +A +      +A  A +             +                        
Sbjct: 474 ---VQRATDTQAGERRAAQASRSHGRFSRNFVVQGS------------------------ 506

Query: 581 NTTTRQLTREYTYGGKLTENIVQAV-SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDT 639
                       +      +I Q +   D+             ++V  +HDE++    + 
Sbjct: 507 ---------AAEWALAWLGHIRQGLHGADV-----------DAELVFFLHDEVMVHCAEQ 546

Query: 640 DEFNASMLYH 649
                  +  
Sbjct: 547 HADRVQQIVE 556


>gi|148284142|ref|YP_001248232.1| ribonuclease D [Orientia tsutsugamushi str. Boryong]
 gi|146739581|emb|CAM79331.1| ribonuclease D [Orientia tsutsugamushi str. Boryong]
          Length = 210

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 57/191 (29%), Gaps = 40/191 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFG-------FDDHPVELWDCVHDPVMPQV 56
           L ID ET             +A D  + L  F         DD  V L            
Sbjct: 20  LAIDTETMGLN---------FARD-RLCLLQFCQESKDDNIDDKEVFLVKFEDQQYNSHN 69

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG 113
           LK+ L +   T + H + F+   ++    + +      CT V ++          LK + 
Sbjct: 70  LKKLLMDCSRTKIFHFARFDLAAIQYYLGVTLN--NIFCTNVASKLVRTYTDSHGLKDLC 127

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L            L  +  K         ++  + +E      EY   DV     I  
Sbjct: 128 REL------------LGIQISKQCQSSDWGRQSLTSDQE------EYAAKDVVYLHRIKN 169

Query: 174 RLEPLSSKEQE 184
            LE +  +E  
Sbjct: 170 ILEEMLIREHR 180


>gi|322830259|gb|EFZ33345.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma
           cruzi]
          Length = 274

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 81/315 (25%), Gaps = 65/315 (20%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           ++ AD + +E  VLA ++ +   L+      D +    +                     
Sbjct: 1   MIEADYSQLEVVVLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN------------ 48

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                                +                +     +F R         A  
Sbjct: 49  ---------------------VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATT 87

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                   ER+  A  Q +  +S  +    +     +E G   + R R      +    +
Sbjct: 88  TGLTEHEVERLISAEEQHYKDLSRYY----RLVMDCVEAGADRLLRLRTLDAATWSPAMR 143

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
             ++L  P    L Y  V     +     ++         +L    VQ ++ +I+     
Sbjct: 144 RMILLTEP----LHYFVVPTGSKFDFAKDKKSI------PRLKNYPVQGLAGEIVQIMCG 193

Query: 616 NA---------TKAGYDIVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN--------PSW 657
                            +V TVHD +  +   +        +  +M+S         P  
Sbjct: 194 KIVRRFYEKRNYDGRAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDV 253

Query: 658 AKGLPLKAEGYESKR 672
              +P  A+ +    
Sbjct: 254 KLDVPFNADVHIGPS 268


>gi|190571105|ref|YP_001975463.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213019628|ref|ZP_03335434.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357377|emb|CAQ54811.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995050|gb|EEB55692.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 206

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 70/206 (33%), Gaps = 36/206 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           + ++ +D E          G+    +   + L    F+D    L    +D   P  L++ 
Sbjct: 19  IKSIAVDTE--------AMGLLHSRD--RLCLVQLSFNDGNAHLVQFKNDYTAP-NLRKI 67

Query: 61  LENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWICTLVLARSNG---LPSALKAVGEAL 116
           LE+ ++T + H + F+ +++        +P     CT + +R         +LK +   L
Sbjct: 68  LEDKNITKIFHFARFDVSIIHYYLQTWALP---CYCTKIASRLVRTYTDNHSLKELCLEL 124

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                       L  +  K +      + N             Y   DV    +I ++L+
Sbjct: 125 ------------LDIKLNKQQQSSDWGNENLT------DKQKSYAASDVLYLHKIKEKLD 166

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVA 202
            +  +E      ++        +++ 
Sbjct: 167 LMLERENRKELAEKCFEFLPTRIELD 192


>gi|240849913|ref|YP_002971302.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
 gi|240267036|gb|ACS50624.1| 3'-5' exonuclease [Bartonella grahamii as4aup]
          Length = 206

 Score = 71.7 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 44/174 (25%), Gaps = 31/174 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L + L +
Sbjct: 22  IAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADVIQISKGQKSAPNLVKLLGD 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             V  + H   F+  +L   F   +      CT + ++                  ++  
Sbjct: 72  NAVIKIFHFGRFDLAILAHTFG--VMPEAIFCTKIASKL-----------------TRTY 112

Query: 124 EEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREIFKRL 175
            +   L     +         +       E       EY   DV     +    
Sbjct: 113 TDRHGLKEICNELLNVNISKQQQSSDWAAETLSQAQIEYAASDVLYLHRLKVIF 166


>gi|189184295|ref|YP_001938080.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda]
 gi|189181066|dbj|BAG40846.1| ribonuclease D [Orientia tsutsugamushi str. Ikeda]
          Length = 210

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 57/191 (29%), Gaps = 40/191 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFG-------FDDHPVELWDCVHDPVMPQV 56
           L ID ET     +             + L  F         DD  V L          + 
Sbjct: 20  LAIDTETMGLNLIRD----------RLCLLQFCQESKDDTIDDKEVFLVKFEDQQYNCRN 69

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG 113
           LK+ L +   T + H + F+   ++    + +      CT V ++          LK + 
Sbjct: 70  LKKLLMDDGRTKIFHFARFDLAAIQYYLGVTLN--NIFCTNVASKLVRTYTDSHGLKDLC 127

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L            L  +  K         ++  + +E      EY   DV     I  
Sbjct: 128 REL------------LGIQISKQCQSSDWGGQSLTSDQE------EYAAKDVVYLHRIKN 169

Query: 174 RLEPLSSKEQE 184
            LE +  +EQ 
Sbjct: 170 ILEEMLIREQR 180


>gi|15890866|ref|NP_356538.1| ribonuclease D [Agrobacterium tumefaciens str. C58]
 gi|15159163|gb|AAK89323.1| ribonuclease D [Agrobacterium tumefaciens str. C58]
          Length = 208

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 49/201 (24%), Gaps = 27/201 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++            L   L +
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSSGDGTADVIRIAAGQKQAPNLVHMLAD 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H   F+  VL   F +        CT + +R            +   L   K 
Sbjct: 74  PARQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLCR------TYTDRHGL---KD 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L     K +             +       EY   DV     +  +L     ++ 
Sbjct: 123 NLKEMLEVDISKAQQSSDWAAETLSPAQ------LEYAASDVLYLHALRDKLTARLIRDG 176

Query: 184 ELWYLDQTINDRGYCVDVALA 204
            + + D           + L 
Sbjct: 177 RIEHADACFAFLPTRAKLDLL 197


>gi|60219516|emb|CAI56770.1| hypothetical protein [Homo sapiens]
          Length = 2149

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/432 (10%), Positives = 98/432 (22%), Gaps = 92/432 (21%)

Query: 25   AEDVCVILFAFGFDDHPVELWDCVHDPV--------MPQVLKEALENTDVTIVAHNSY-- 74
             +D  V+  A  +       +    +          +P  L  +L   D      +    
Sbjct: 1724 CDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRK 1783

Query: 75   ----------FE----RTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK 117
                      ++      +L     + +    +    V        S    L ++  +  
Sbjct: 1784 ESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFL 1842

Query: 118  LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                 + EG E          +       +        L        +    +     + 
Sbjct: 1843 PHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFN-SMNQLNSLLQKENLQDV 1901

Query: 178  LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                E    Y    +   G     A   +   I+  +   ++ +   L      S    +
Sbjct: 1902 FRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHS-FSFTSSD 1960

Query: 238  KLKTWLFLETGLHL--------------------EDLTE-------TTCQRVLSSNKKLT 270
             +   LFLE  L                      ++  +       +T + VL+  K L 
Sbjct: 1961 DIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQLSTSKDVLNKLKALH 2020

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSD-----GRLRGTLQFLGASRTGRWSGCVFP 325
            P    +   R   + +    +  L      +      R+    Q   A+  GR +     
Sbjct: 2021 PLPGLILEWRRITN-AITKVVFPLQREKCLNPFLGMERIYPVSQSHTAT--GRITFTEPN 2077

Query: 326  PQNLPR---------------------------PSRSHEELDQIITHLPTSITSDPDPLQ 358
             QN+PR                             +  +                 D   
Sbjct: 2078 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGM 2137

Query: 359  IISDCVRSCVIA 370
              S  +R   + 
Sbjct: 2138 PFSISMRHAFVP 2149


>gi|269956874|ref|YP_003326663.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305555|gb|ACZ31105.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894]
          Length = 546

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 57/382 (14%), Positives = 94/382 (24%), Gaps = 101/382 (26%)

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
              ++    ++      + SR         ++    DGR R     +G   TGRWS    
Sbjct: 231 ELMEVQHPVVEPLMEYKKLSRLLTANGWNWLDTWVRDGRFRSEY-VVGGVVTGRWSSVGG 289

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
               LP+                                VR  V+A  G  LVVAD+A +
Sbjct: 290 GALQLPK-------------------------------EVRRAVVADPGWTLVVADVAQL 318

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E RVLA M+ +     A               +    A      R + KV  L   Y G 
Sbjct: 319 EPRVLAAMSRDDAMAAAGRG---------GDMYAGIVASGAVATRDLAKVGMLGAMYGGT 369

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
             A  ++  +                    +  A               +   ++G    
Sbjct: 370 TGASAQVLPSL----------------ARTFPRAIALVEDAARAGERGEVVSTWLGRGSP 413

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           R    W +  +   +         +          +  R     V         +  L S
Sbjct: 414 RPGADWERAQAGAYD--------ADDGARARSYTRSFGRFTRNFVVQGTAAEWALAWLAS 465

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDI 624
            R      +G + +            +     L   +                       
Sbjct: 466 ARRR-LWALGEHGTGDG--------VFANRPHLAFFL----------------------- 493

Query: 625 VLTVHDEIVCETPDTDEFNASM 646
               HDE+V  TP     + + 
Sbjct: 494 ----HDEVVVHTPAAMADDVAR 511


>gi|49473901|ref|YP_031943.1| ribonuclease d [Bartonella quintana str. Toulouse]
 gi|49239404|emb|CAF25742.1| Ribonuclease d [Bartonella quintana str. Toulouse]
          Length = 206

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 49/177 (27%), Gaps = 31/177 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           +  + +D ET         G+  + +   + +      D   ++            L + 
Sbjct: 19  IDAVAVDTET--------LGLQPHRD--RLCVVQLSSGDGTADIIQIAKGQKSAPNLVKL 68

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L++  +T + H   F+  +L   F   +      CT + ++                  +
Sbjct: 69  LKDKAITKIFHFGRFDLAILAYTFG--VMPDVVFCTKIASKL-----------------T 109

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW--RLFGEYCKGDVTVTREIFKRL 175
           +   +   L    C+         +   +       R   EY   DV     +    
Sbjct: 110 RTYTDRHGLKEICCELLNVNISKQQQSSDWAAEILSRAQIEYAASDVLYLHRLRDIF 166


>gi|323145829|gb|ADX32070.1| hypothetical protein [Pseudomonas phage P3_CHA]
 gi|323146015|gb|ADX32255.1| hypothetical protein [Pseudomonas phage PAK_P3]
          Length = 305

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 74/222 (33%), Gaps = 37/222 (16%)

Query: 2   ATLFIDFET------RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL------WDCVH 49
             L +D ET            T  G  +  ++  ++ F+  +      L      +D  +
Sbjct: 49  KVLILDIETAPAIGYYWSRWKTTVGQNQVLQEGYLLTFSAKWLGSDDILECKLPDFDLYN 108

Query: 50  DP-----VMPQVLKEALENTDVTIVAHNS-YFERTV----LKACFNLDIPIHRWICTLVL 99
                   + +VL   LE  D  +VAHN   F+       L     +    ++ I T  +
Sbjct: 109 TEPKNDRELLKVLVGLLEEAD-FVVAHNGRKFDLPTINAHLVKHDIMPPSPYKIIDTCDI 167

Query: 100 ARSNG--LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           A+       ++LK++   LK    K++ G               L+ R      EAW   
Sbjct: 168 AKKVFKFPSNSLKSLAIFLKCQHDKLDTG------------GFELWARVMDGDPEAWDHM 215

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
            EY   DV V  E++ +L    +    L  L          V
Sbjct: 216 MEYNVFDVIVLEEVYLKLRAWYNTHPSLSALIPQKVTPLCPV 257


>gi|158345050|ref|YP_001522815.1| hypothetical protein PPLKD16_gp24 [Pseudomonas phage LKD16]
 gi|114796403|emb|CAK25959.1| hypothetical protein [Pseudomonas phage LKD16]
          Length = 348

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 65/213 (30%), Gaps = 26/213 (12%)

Query: 2   ATLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDP--- 51
             L +D ET         +     G+ +   D  ++ F   +     V   DC  DP   
Sbjct: 94  RVLSLDIETSPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWLHSDEVIYMDCQGDPLDD 153

Query: 52  -VMPQVLKEALENTDVTIVAHNSY-FER-TVLKACFNLDIPI---HRWICTLVLARSNGL 105
             +   L + L+  D+ IV  N   F+   +    F   +P     + I TL++A+    
Sbjct: 154 LHLLVALHKLLDEADIIIV-QNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAK---- 208

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                     L+  +      K    R         L+     ++ EAW     Y   DV
Sbjct: 209 -QQFAFTSRKLEYMTHNACTIK---KRLHGKFPGFDLWAACLQDNPEAWEEMRLYNIDDV 264

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
               E++  + P          +     +    
Sbjct: 265 RSMEELYILMRPW-FVGHPNVAVYFNDEEPTVR 296


>gi|83855386|ref|ZP_00948916.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
 gi|83941910|ref|ZP_00954372.1| exonuclease, putative [Sulfitobacter sp. EE-36]
 gi|83843229|gb|EAP82396.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
 gi|83847730|gb|EAP85605.1| exonuclease, putative [Sulfitobacter sp. EE-36]
          Length = 204

 Score = 71.3 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 49/203 (24%), Gaps = 33/203 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D    L            L   LE+
Sbjct: 20  VAIDCET--------MGLHPHRD--RLCVVQLSGGDGNAHLVQIAKGQTEAPNLCALLED 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             V  + H   F+   L   F          CT + +R          L  + + L    
Sbjct: 70  PHVLKLFHYGRFDIAALLNTFG--AKAAPVYCTKIASRLVRTYTDRHGLAKLCQEL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +             +        Y   DV    ++   L  +  
Sbjct: 124 --------LSVDISKQQQSSDWGAETLTKAQID------YAASDVLHLHKLRDVLNQMLI 169

Query: 181 KEQELWYLDQTINDRGYCVDVAL 203
           +E  +               + L
Sbjct: 170 REGRIELAQACFEFLPTRAQLDL 192


>gi|88607131|ref|YP_505646.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
 gi|88598194|gb|ABD43664.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ]
          Length = 204

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 58/205 (28%), Gaps = 36/205 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET          +        V L      +    L     D   P  L++ + +
Sbjct: 20  VAVDTET----------MGLVCRRDRVCLVQLSAGNGDAHLVKFDGDYSAP-NLRKVISD 68

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119
             V  + H + F+   ++      +      CT + +R          LK +  E L + 
Sbjct: 69  PGVLKIFHFARFDVAAIRH--GFGMWATPCYCTKIASRLVRTYTNHHGLKDLCYELLGVK 126

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                               Y   DV     I K+L+ + 
Sbjct: 127 INKAQQSSDWGR-------------------EVLTAEQLSYAAADVIYLHAIKKKLDMML 167

Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204
            +E++    +          ++ L 
Sbjct: 168 EREEKQELAEACFKFVPVRAELDLL 192


>gi|257068677|ref|YP_003154932.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brachybacterium faecium DSM 4810]
 gi|256559495|gb|ACU85342.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brachybacterium faecium DSM 4810]
          Length = 590

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 58/445 (13%), Positives = 101/445 (22%), Gaps = 143/445 (32%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +   E+       +       KL   L    G+ +     +T Q  L       P 
Sbjct: 222 RRMVETGAEVREALGDPLVPLDSAPKLLRALHRA-GIDV----ASTSQWELKE--HQHPA 274

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +     + SR       T ++    +GR R      G   TGRW+        +PR 
Sbjct: 275 IAPLLQY-KKMSRLLTANGWTWLDEWVHEGRYRPLY-VPGGVVTGRWASSGGGALQIPR- 331

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R  + A  G  LV AD++ +E RVLA M
Sbjct: 332 ------------------------------QLRPALRADPGWLLVSADVSQLEPRVLAAM 361

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G++  + A    +       A   +          R   K+  L   Y G         
Sbjct: 362 SGDRAMIAAGAGRDLYSGIVEAGVVST---------RQEAKIGVLGALYGGTTG------ 406

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
             +G  +               + DA                   ++G +     + W +
Sbjct: 407 -DSGRVVPRLRQ---------TFPDAMRLVDDAAATGERSGTVTTWLGRSSPAPDEEWIR 456

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD 572
                        +A  Q      A    +R         +                   
Sbjct: 457 A-----------QRAAHQVDAPAGARERARRAARDRGRFTR------------------- 486

Query: 573 VGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT-------------- 618
                                       +VQ  + +     M                  
Sbjct: 487 --------------------------NFVVQGTAAEWALSWMAALRLRLAGFPAVPEPEA 520

Query: 619 --------KAGYDIVLTVHDEIVCE 635
                        +   +HDE++  
Sbjct: 521 AAPSGPVFSRRAHLAFFLHDEVIVH 545


>gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18]
 gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18]
          Length = 377

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 62/193 (32%), Gaps = 35/193 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L  D E  S        +  Y E   V L     +     +          +VL     
Sbjct: 34  VLAFDLEADS--------LHHYTE--KVCLIQVSSESENRLIDPLAPID--VRVLAPIFA 81

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG-EALKLSS 120
           N  +  + H + ++   L   F +++       T++ ++  G     L A+  +   +  
Sbjct: 82  NPAIKKIFHGADYDMRSLYRDFGIEV--VNLFDTMIASQFLGESEFGLAALLKKRFGVEL 139

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +   R               P  +E      EY   D ++  E++++LE    
Sbjct: 140 DKRYQKADWSKR---------------PFSQE----MLEYAMKDTSLLIELYRQLEAELL 180

Query: 181 KEQELWYLDQTIN 193
            +  L ++++   
Sbjct: 181 AKGRLAWVEEESE 193


>gi|297183461|gb|ADI19592.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0770_37D02]
          Length = 214

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 59/202 (29%), Gaps = 32/202 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E          G+     D  + L  F   ++   +            +K+ LEN
Sbjct: 29  LAIDTE--------GSGLQIPHRD-KLSLVQFSTGNNDAYIIQPNRKDYKAPNIKKILEN 79

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLSS 120
             +T + H   ++ + L+        +     T + ++          LK +        
Sbjct: 80  DKITKIGHYLRYDISGLEYFL--KCNVKNIFDTKLASKLCRTYSQNHGLKDLALEF---- 133

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179
                GK+L  R           D NK    E      +YC  DV    +I   L  +  
Sbjct: 134 ----CGKKLDKRL-------GSSDWNKNL-DELTDAQLQYCSNDVIYLHKIKDELYKMLV 181

Query: 180 -SKEQELWYLDQTINDRGYCVD 200
                EL+            +D
Sbjct: 182 RENRLELYENCIKFLKTRIKLD 203


>gi|47934836|gb|AAT39856.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 219

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 65/232 (28%), Gaps = 63/232 (27%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQ--------------------------ELESLT 226
              G+  D   A  L   + +E   + +                          E  + T
Sbjct: 1   ERNGWYFDEEAARKLESSLRIEHETITKVLQDRYPYVAGKEFTLKRNNKTQGYIEGCTFT 60

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS--NKKLTPQAIQVFNNRMRAS 284
                +    + +   L    G     LT +T + V+     K++       F   +  +
Sbjct: 61  RLKEFNPSSRDHIAWILKTHCGWTPSSLT-STGKAVIDETVLKEIGTDTALKFLTLLDLT 119

Query: 285 RSA---VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           +        +N   + + +  R+        A+   R +        +P           
Sbjct: 120 KQLGMISEGVNAWQKLVTTSSRIHHYCSTNTAT--FRCAHRTPNLGQVPSD--------- 168

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                               +  R    A+ G+++V ADL+GIE R+LA   
Sbjct: 169 --------------------ERFRRLFTATPGQRMVAADLSGIELRMLAHYL 200


>gi|296446798|ref|ZP_06888736.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b]
 gi|296255673|gb|EFH02762.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b]
          Length = 204

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 54/185 (29%), Gaps = 33/185 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + L      +   +L            L+  L 
Sbjct: 19  VVAIDTET--------LGLNPHRD--RLCLVQLSGGNGDADLVRIAPGQTRAPNLEALLA 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           N +V  + H   F+  V+   F +        CT + ++          LK +   L   
Sbjct: 69  NPNVLKLFHFGRFDIAVMAKTFGVMAEP--VYCTKIASKLIRTYTDRHGLKDLVREL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +           + +        Y   DV     + ++L+ + 
Sbjct: 124 ---------LGVEISKQQQSSDWGADTLSDAQ------LSYAASDVLYLHALREKLDVML 168

Query: 180 SKEQE 184
           ++E  
Sbjct: 169 AREHR 173


>gi|282866382|ref|ZP_06275427.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE]
 gi|282558778|gb|EFB64335.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE]
          Length = 568

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 61/419 (14%), Positives = 105/419 (25%), Gaps = 139/419 (33%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F + G+ +        ++V        P    +     +  R       + +     +GR
Sbjct: 234 FAQAGIKVRSTRRWELEKV------DHPAVEPLIRY-KKLYRVWTAHGWSWLTDWVREGR 286

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G + +GRW+        +PR                                
Sbjct: 287 FRPEY-QPGGTVSGRWTTNGGGALQIPR-------------------------------V 314

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G +LVVAD   +E RVLA ++ ++  ++      DLY     R+F+     
Sbjct: 315 IRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHEGDLYTALSDRAFHGDRD- 373

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                    K+  L   Y            T+G  L   A L                  
Sbjct: 374 -------HAKIALLGAVY----------GQTSGDGLKNLAAL------------------ 398

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                      R++          + +A +   E G+ +     
Sbjct: 399 ---------------------------RRRFPHAVAY---VDEAAK-AGEEGRLVRTWLG 427

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
           R  P      +     +   SG        G    Y  T     +     G      +VQ
Sbjct: 428 RTSPPAAGAGESEEAGIPQESGDPAPGESAGE---YGFTPGYASSDSRARGRFTRNFVVQ 484

Query: 604 AV------------------SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
                                R               ++V   HDE++   P  +    
Sbjct: 485 GSAADWALLLLAALRRTLAAGR------------MRAELVFFQHDEVIVHCPAREAPAV 531


>gi|269975269|gb|ACZ55493.1| putative DNA polymerase [Staphylococcus phage SA1]
          Length = 910

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 56/440 (12%), Positives = 115/440 (26%), Gaps = 59/440 (13%)

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             +  +  ++K    L          LTE++   +     +   +   + + R     S 
Sbjct: 484 QYIEHNWSVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKYYTLMHRRRTIENSK 543

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             +    +  +  DGRL       GA   G  +G +                        
Sbjct: 544 DDE-KGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ---------------------- 575

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET--- 404
             I + P    +    +R      +G  ++  D    +  +L    G++   KA      
Sbjct: 576 YGIVNVPSGAAVYGAPMREVWTCEDGTDIISVDQNSAQLVLLCNFMGDEDFTKAVTEGKE 635

Query: 405 --GEDLYVTTYARSFNVAPA---QVTKDQRAIGKVMELALGYQGGAKAFQK--MASTTGL 457
                          ++      +  K  R   +     +     A              
Sbjct: 636 SVEFTKQEDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHTLNSIYFGLNKEE 695

Query: 458 NL-----NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV-KKAWR 511
           ++          L+   +   +      +         + A       T    + K+ + 
Sbjct: 696 DIVRCRETQDEELLHEITKGRKKSKNGIYALLFGAGDEKFAKTIKASSTEEGALTKQTYF 755

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            +  ++ +L + L + F+ T +  + +  +        Y+K     L    P    L Y 
Sbjct: 756 VRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKGGYIKVAGAWLWCKSPHKL-LNYT 814

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
            +G+     N       RE T       N                    G   V + HDE
Sbjct: 815 LMGSEAQVQNEGINLANRELTERKLTVLNG--------------RKPAIGARWVCSYHDE 860

Query: 632 IVCETPDTDEFNASMLYHLM 651
           +  E P  D  +   +   M
Sbjct: 861 VSLEVPTKDVPDVKEIIDRM 880


>gi|227824096|ref|YP_002828069.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234]
 gi|227343098|gb|ACP27316.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234]
          Length = 208

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 53/208 (25%), Gaps = 41/208 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++            L   L +
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVRMLAD 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS-------NGLPSALKAVGEAL 116
                + H   F+  VL   F +        CT + +R        +GL   LK +   L
Sbjct: 74  PARQKIFHFGRFDIAVLFHTFGVT--STPVFCTKIASRLTRTYTDRHGLKDNLKEL---L 128

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +   K ++  +                              EY   DV     +  +L 
Sbjct: 129 DVDISKQQQSSDW-------------------AADILSPAQLEYAASDVLHLHALRDKLT 169

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALA 204
               ++  + + D           + L 
Sbjct: 170 ARLIRDGRMEHADACFAFLPTRAKLDLL 197


>gi|163745220|ref|ZP_02152580.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161382038|gb|EDQ06447.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 204

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 48/204 (23%), Gaps = 35/204 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D    L            L   LEN
Sbjct: 20  VAIDCET--------MGLHPHRD--RLCVVQLSGGDGHAHLVQIAKGQTEAPNLCALLEN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             V  + H   F+   +   F          CT + +R          L  + + L    
Sbjct: 70  PHVLKLFHYGRFDIAAMLNAFGATAAP--VYCTKIASRLIRTYTDRHGLAKLCQEL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179
                   L     K +       +     +        Y   DV     +   L     
Sbjct: 124 --------LSVDISKQQQSSDWGAKELTQAQID------YAASDVLYLHRLRDELNKRLI 169

Query: 180 -SKEQELWYLDQTINDRGYCVDVA 202
                ++             +D+ 
Sbjct: 170 REGRMDMAQACFDFLPMRARLDLE 193


>gi|312114054|ref|YP_004011650.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
 gi|311219183|gb|ADP70551.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100]
          Length = 204

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 45/164 (27%), Gaps = 16/164 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D    L            L   L N
Sbjct: 20  VAIDTET--------LGLKPHRD--RLCVVQLSAGDGNAHLVQFEKGHYDAPNLTALLVN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119
             V  + H   F+  V++      +      CT + A+          LK +  E L + 
Sbjct: 70  PAVLKIFHFGRFDIAVMQQYLG--VKTGPVYCTKIAAKLVRTFTERHGLKDLCRELLGVE 127

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
             K ++  +        E            H    +L     + 
Sbjct: 128 LSKQQQTSDWGQAKLTPEQLSYAASDVLHLHALKEKLDALLARE 171


>gi|213420856|ref|ZP_03353922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 72

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 611 AEGMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPL 663
              M+              +++ VHDE+V E    D    +  ++ LM +       +PL
Sbjct: 1   KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPL 58

Query: 664 KAEGYESKRY 673
             E    + +
Sbjct: 59  LVEVGSGENW 68


>gi|316931442|ref|YP_004106424.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
 gi|315599156|gb|ADU41691.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1]
          Length = 211

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 52/179 (29%), Gaps = 33/179 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            LK+ L +
Sbjct: 27  VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPLGATDAPNLKKLLGD 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             V  + H + F+   L   F   +      CT + +R          LK +   L    
Sbjct: 77  PAVVKIFHFARFDLAALYKAFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 130

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                   L     K +        +  + + A      Y   DV     +  +L+ + 
Sbjct: 131 --------LGIDLSKQQQSSDWGAESLSDAQLA------YAASDVLHLHALRDKLDTML 175


>gi|327198232|ref|YP_004306808.1| putative DNA polymerase [Pseudomonas phage KPP10]
 gi|297591758|dbj|BAJ09178.1| putative DNA polymerase [Pseudomonas phage KPP10]
          Length = 305

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 69/204 (33%), Gaps = 35/204 (17%)

Query: 2   ATLFIDFET------RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL------WDCVH 49
             L +D ET            T  G  +  ++  ++ F+  +      L      +D  +
Sbjct: 49  KVLILDIETAPAIGYYWSRWKTTVGQNQVLQEGYLLTFSAKWLGSDDILECKLPDFDLYN 108

Query: 50  DPV-MPQVLKEALE---NTDVTIVAHNS-YFERTV----LKACFNLDIPIHRWICTLVLA 100
                 + L + L    +    +VAHN   F+       L     L    ++ I T  +A
Sbjct: 109 TEPKNDRELLKVLAGLLDEADFVVAHNGRKFDLPTINAHLVKHDILPPSPYKIIDTCDIA 168

Query: 101 RSNG--LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
           +       ++LK++   LK    K++ G               L+ R      EAW    
Sbjct: 169 KKVFKFPSNSLKSLAIFLKCQHDKLDTG------------GFELWARVMDGDPEAWDHMM 216

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE 182
           EY   DV V  E++ +L    +  
Sbjct: 217 EYNVFDVIVLEEVYLKLRAWYNTH 240


>gi|271967935|ref|YP_003342131.1| DNA polymerase I - 3'-5' exonuclease-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270511110|gb|ACZ89388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains-like
           protein [Streptosporangium roseum DSM 43021]
          Length = 531

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 62/406 (15%), Positives = 115/406 (28%), Gaps = 88/406 (21%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
                L  ++         +    +++    F   G+ +        ++V        P 
Sbjct: 194 ARLQALADQVAEAFGTP-FNPDSPQQIVK-AFKSAGVPVASTRAHEIKKV------DHPG 245

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +       +R          +    D R R     +G   +GRW+        +P+ 
Sbjct: 246 VAPLLAY-KEMARIYSFHGWVWADQWVRDHRFRPEY-VVGGVVSGRWATSGGGALQIPK- 302

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R  V+A EG  LVVAD A +E RVLA M
Sbjct: 303 ------------------------------VMRQVVVADEGWTLVVADAAQLEPRVLAAM 332

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           AG+    +A    +               AQ    +R   K+  L+  Y G +    K+ 
Sbjct: 333 AGDGGLARAAGQIDLYQA----------LAQAFGGERDSAKIAMLSAMYGGTSGDAPKLL 382

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
           +                   + +  A  F      +  E  +   ++G  C +    WR+
Sbjct: 383 AVM----------------RQRFPRAYQFVEDAARSGEEGKLVRSWLGRTCPQPSAGWRE 426

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVY-- 570
             S          +      + G+       +     +       L  +LP    LV+  
Sbjct: 427 LVSG--------PEGKRAARDRGRFTRNFVVQATAAEWALALMAVLRGLLPDPARLVFFQ 478

Query: 571 ---------RDVGNN-RSYLNTTTRQLTREYTYGGKLTENIVQAVS 606
                     ++     + +     + TR   +G       +QAV+
Sbjct: 479 HDEVMVHCPAELAEEVVAAVGRAAEEATRL-LFGPTPVRFPMQAVA 523



 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 49/215 (22%), Gaps = 40/215 (18%)

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
            +    MA   GL         + +      +         +                  
Sbjct: 326 PRVLAAMAGDGGL----ARAAGQIDLYQALAQAFGGERDSAKIAMLSAMYGGT--SGDAP 379

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           ++    RQ+  R  +    +  A     E                               
Sbjct: 380 KLLAVMRQRFPRAYQF---VEDAARSGEEGKLVRSWL----------------------- 413

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK----A 620
           GR+      G          ++  R+   G      +VQA + +  A  +M   +     
Sbjct: 414 GRTCPQPSAGWRELVSGPEGKRAARDR--GRFTRNFVVQATAAEW-ALALMAVLRGLLPD 470

Query: 621 GYDIVLTVHDEIVCETPDT-DEFNASMLYHLMTSN 654
              +V   HDE++   P    E   + +       
Sbjct: 471 PARLVFFQHDEVMVHCPAELAEEVVAAVGRAAEEA 505


>gi|90421943|ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
 gi|90103957|gb|ABD85994.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 204

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 35/180 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            LK+ L +
Sbjct: 20  VAIDTET--------MGLNPHRD--RLCVVQLSNGDGSADVVQIPVGHSDAPNLKKLLGD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119
             +T + H + F+   L       +      CT + +R          LK +  E L + 
Sbjct: 70  PAITKIFHFARFDLAALYNALG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREVLGVD 127

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                ++  + + A      Y   DV     +  RL+ + 
Sbjct: 128 LSKQQQSSDW-------------GAQSLSDAQLA------YAASDVLHLHGLRTRLDAML 168


>gi|319405135|emb|CBI78741.1| Ribonuclease D [Bartonella sp. AR 15-3]
          Length = 206

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 46/174 (26%), Gaps = 31/174 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L   LE+
Sbjct: 22  VAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADIIQIAKGQNRAPNLVTLLED 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H   F+  +L   F   +      CT + ++                  ++  
Sbjct: 72  KKITKIFHFGRFDLAILAHTF--AVMPDVVFCTKIASKL-----------------TRTY 112

Query: 124 EEGKELIARFCKGETHECLYDRN-KPNHREAWRLF-GEYCKGDVTVTREIFKRL 175
            +   L     +         +       +A      EY   DV     +    
Sbjct: 113 TDRHGLKEICSELLNVNISKQQQSSDWAADALSRAQIEYAASDVLYLHRLKSIF 166


>gi|196009946|ref|XP_002114838.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens]
 gi|190582900|gb|EDV22972.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens]
          Length = 628

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/306 (11%), Positives = 83/306 (27%), Gaps = 78/306 (25%)

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           V +  +    L  +     +       ++     +D  L      I + +   L+++   
Sbjct: 276 VKICYDWQSCLYHMIRFYMKEIQ-TAVLDITPIRIDTELLRDYQPIFEAKLEALEKKAHQ 334

Query: 225 LTYGLV---------------SSSRCLEKLKTWLFLETGL----------HLEDLTE-TT 258
           +   +                 S +  ++++T LF +  L            +     +T
Sbjct: 335 VYCIIFIKRLRQSILQISGYSFSLQSPKQIETILFEKLKLDQVLKLNLVLKTKKKQSLST 394

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGR 318
              VL                    ++     ++ ++  M                    
Sbjct: 395 SDEVL--------------------NKIKSTSIDGILRLMKK------------------ 416

Query: 319 WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVV 378
                   Q +P+       ++           +            R  +I  +   LV 
Sbjct: 417 ------NMQAIPKAMIDFGGIEDTKIFGENENETYKGSYSP-----RDMIITKKNYSLVS 465

Query: 379 ADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY--ARSFNVAPAQVTKDQRAIGKVME 436
            D   IE R+LA  + +   L+ F     + + T+     FN     +++ +    K + 
Sbjct: 466 VDFQAIELRLLAHFSNDSMLLQIFNEHPTINIYTWLATFWFNKNIDDISQAEFDQAKEIC 525

Query: 437 LALGYQ 442
            ++ Y 
Sbjct: 526 YSILYG 531


>gi|254796888|ref|YP_003081725.1| ribonuclease D [Neorickettsia risticii str. Illinois]
 gi|254590124|gb|ACT69486.1| ribonuclease D [Neorickettsia risticii str. Illinois]
          Length = 216

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 58/211 (27%), Gaps = 33/211 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E+   ++              + L      D    L            LK  + +
Sbjct: 31  IAVDTESMGLVN----------RRDRLCLVQLSTGDGTAHLVRFNGTDYSAPRLKSLIVD 80

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             V  + H + F+  +L+      +      CT + +R         +LK +   L    
Sbjct: 81  PAVIKIFHFARFDIAILRHYLG--VLTENCYCTKIASRLVRTYTDHHSLKELCSDL---- 134

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                G  L                +  +          Y   DV     I + L+ +  
Sbjct: 135 ----LGVRLNK---------GKQSSDWGSASLTREQM-SYAASDVLYLHAIKEALDVMLK 180

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           +E+ +           Y  ++ L    NQ +
Sbjct: 181 REKRIELAQACFQFLPYRAELDLLGWENQDI 211


>gi|167821768|ref|ZP_02453448.1| 38L [Burkholderia pseudomallei 91]
          Length = 808

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/436 (9%), Positives = 115/436 (26%), Gaps = 91/436 (20%)

Query: 257 TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL----------NTLVEAMNSDGRLRG 306
           +    V+ +        ++   N  +  +                  ++  +  DG +  
Sbjct: 390 SVSSEVIEALGNRDIPFLKTLANVAKLGKDLGTYYITTDEKTGQQKGMLTLVGDDGIIHQ 449

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
            +    ++ T R+S      QN+                                  V+S
Sbjct: 450 KIN-HTSTVTARFSEQDPNLQNV---------------------------SGAGKSQVKS 481

Query: 367 CVIAS--EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
             ++      ++V +D   +E  + A + G +  +     G D++    ++   +     
Sbjct: 482 VFVSRWLADGQVVQSDFTSLEIFIQAILTGCKQLIDDLRAGLDMHCVRVSQKEGITYED- 540

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
                                     +    G + +     +       +     +F R 
Sbjct: 541 -------------------------AVLKCKG-DPSRGIAPLPDWEKKRKGAKEFSFQRA 574

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                   A     +    + + KA   ++  +S      + A  + I+  +      + 
Sbjct: 575 YGAGAAGIAASTGMLLEDVQALIKAEEVRYPELSAY----NAAKTERIKKSRRPTNNIQP 630

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
              +  +         + P  +   YR+       +       +   T   ++    VQ 
Sbjct: 631 HPEVKGLMCQLGKGYSVTPDNKVYSYRESPAPAWLVRQGGMPQSFSPT---EIANYEVQG 687

Query: 605 VSRDILAEGM-MNATKAGYD--------IVLTVHDEIVCETPDTDE-FNASMLYHLMTSN 654
              +     M +                +V  VHD +  +   +    ++++L+  M + 
Sbjct: 688 TGGEWAKAAMWLAIRAFYARKNFGGLALLVNQVHDALYKDAHKSVLFESSALLHACMLAA 747

Query: 655 ---PSWAKG----LPL 663
                W  G    +P+
Sbjct: 748 SDFMEWYFGWKIPVPV 763



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 73/261 (27%), Gaps = 35/261 (13%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           ET     + +       E+  V+   +      V        P       + L++    +
Sbjct: 2   ETTIKAYMKRKASPFLPENFVVVS-GWKRKGGEVMADYFGRGPRPFDWFTKLLKD-TTLL 59

Query: 69  VAHNSYFE-RTVLKACFNLD------IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           V  N  F+    L+   NLD                +          ++     L +   
Sbjct: 60  VGANIKFDLLHALREPQNLDAWMEFVARGGNVWDCQLAEYLL---RGMEPTSHMLSMDEM 116

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK------GDVTVTREIF--K 173
            +  G  +     K +  + L++           L   Y        GD+  T +IF  +
Sbjct: 117 VVSYGGNV-----KIDEVKALWEAGVDTPDIDKDLLLRYLCGDESGLGDIGNTEKIFLGQ 171

Query: 174 RLEPLSSKEQELWYLDQ-------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             +   S + +   L+         +   G  VD AL   L   ++   T +  EL +  
Sbjct: 172 LAKARKSGQVKSILLNMGSLLCTVEMERNGMYVDKALGLRLAAELEERLTAITAELRAYL 231

Query: 227 YGL---VSSSRCLEKLKTWLF 244
                   +      L   +F
Sbjct: 232 PDDCPFDFNWSNRYHLSPLIF 252


>gi|257791482|ref|YP_003182088.1| ribonuclease D [Eggerthella lenta DSM 2243]
 gi|317490632|ref|ZP_07949102.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
 gi|325831419|ref|ZP_08164673.1| ribonuclease D [Eggerthella sp. HGA1]
 gi|257475379|gb|ACV55699.1| ribonuclease D [Eggerthella lenta DSM 2243]
 gi|316910256|gb|EFV31895.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
 gi|325486673|gb|EGC89121.1| ribonuclease D [Eggerthella sp. HGA1]
          Length = 381

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 85/290 (29%), Gaps = 45/290 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E      L +           + L     DD    +     D    +VL   L 
Sbjct: 21  VLAIDTE-----FLREKTYY-----AKLCLIQLATDDETAIVDPFAVDD--LKVLAPVLR 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL---KLS 119
           N +V  + H    +  +L       +  H    T V A   G    +           ++
Sbjct: 69  NENVMKLFHAGNQDLEILLREVG--VLPHPLFDTQVAAALLGHTQQIGYAALVHAECGVT 126

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +K++   +   R                          EY   DV     +++R+    
Sbjct: 127 LKKIDSFTDWSRRPLS-------------------DSQLEYAADDVVYLPRMYERMRAQL 167

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
            +   L +LD+   D                 + ER K  + +  L+   +S++R +   
Sbjct: 168 VELGRLSWLDRDFEDLADP-------ARYAANERERYKRLKRVSQLSRRQLSAAREVAAW 220

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
           +          +      T ++++ + K+       +F  R  + R +  
Sbjct: 221 RELEAQR--RDVPRKWVVTDEQIVEACKREPRSIDDLFMVRGLSDRLSTK 268


>gi|254470791|ref|ZP_05084194.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
 gi|211959933|gb|EEA95130.1| 3'-5' exonuclease [Pseudovibrio sp. JE062]
          Length = 206

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 57/196 (29%), Gaps = 36/196 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+  + +   + +      D   ++       +    L+   E+
Sbjct: 22  VAVDTET--------LGLNPHRD--RLCVVQLSSGDGSADVVQIERGQLAAPNLQALFED 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H + F+  +LK     DI +    CT + ++          LK +   L    
Sbjct: 72  ASKPKIFHFARFDVAILKEYL--DISVSPVWCTKIASKLVRTYTDRHGLKDICREL---- 125

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLS 179
                                   ++     E        Y   DV    ++ +RLE + 
Sbjct: 126 ---------------IGVDLSKQQQSSDWAAEKLTDAQLAYAASDVLHLHKLKERLEFML 170

Query: 180 SKEQELWYLDQTINDR 195
              +E   + Q   D 
Sbjct: 171 E-REERTEIAQKCFDF 185


>gi|163794941|ref|ZP_02188910.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
 gi|159179760|gb|EDP64287.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199]
          Length = 203

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 49/181 (27%), Gaps = 35/181 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET     +             + +  F   D    L            L   L 
Sbjct: 19  VVAIDSETMGLRPIRD----------RLCVVQFSSGDGTAHLVQFAPGEYDAPNLTRMLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           + DV  + H + F+  VL+A     +      CT + ++          LK +   L  +
Sbjct: 69  DPDVLKLFHFARFDVAVLQAFLG--VATAPIYCTKIASKLVRTYTDRHGLKDLCRELIGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                       E       Y   DV     +  RL+ +
Sbjct: 127 DLSKQQQSSDWG-------------------AAELTAEQLAYAASDVLHLHALKDRLDIM 167

Query: 179 S 179
            
Sbjct: 168 L 168


>gi|329847152|ref|ZP_08262180.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19]
 gi|328842215|gb|EGF91784.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19]
          Length = 206

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 35/207 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            ++ +D ET         G+    +D  + +      D    +            LK  L
Sbjct: 18  KSIALDSET--------MGLRFGRDD--LCVVQLSAGDGHAHVVRLNRPAYDCPNLKALL 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-K 117
            +  V  + H   F+  +      +D       CT + ++          LK +   L  
Sbjct: 68  VDPSVLKLFHYGRFDIGMFALHLGVDTSP--VYCTKIASKLARTYTDRHGLKDLSRELVG 125

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K ++  +  A     E                      Y   DV     +  +L+ 
Sbjct: 126 VDMSKAQQSSDWGAATLTPEQ-------------------LAYAASDVLHLHALKDKLDA 166

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALA 204
           + ++E          +     V + LA
Sbjct: 167 MLAREGRSALAQACFDFLPQRVKLDLA 193


>gi|318061874|ref|ZP_07980595.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces sp.
           SA3_actG]
          Length = 555

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 74/502 (14%), Positives = 130/502 (25%), Gaps = 156/502 (31%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVE----------RTKLDQELESLTYGLVSSSRCL 236
            +   +N  G          L + +  E            +L +E+       V      
Sbjct: 173 LVAAELNATGLPWSAERHKDLLRELLGERYAGGGEPRGLAELAEEISRAFGRRV-RPDLP 231

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
            ++    F E G+ L        ++V        P    +     +  R       + + 
Sbjct: 232 AEVVR-AFAEAGVKLTSTRRWELEKV------DHPAVAPLLTY-KKLYRVWTAHGWSWLA 283

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
               +GR R      GA  +GRW+        +P+                         
Sbjct: 284 DWVREGRFRPRYVVGGA-VSGRWTTAGGGALQIPK------------------------- 317

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  VR  V+A  G +LVVAD A +E R+LA +AG+   L      +DLY     R+
Sbjct: 318 ------VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRA 371

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F               K+  L   Y            T+G  L   A L           
Sbjct: 372 FAGDRD--------RAKIAVLGAIY----------GQTSGDGLKNLAAL----------- 402

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                                             R++  +       + +A     E G+
Sbjct: 403 ----------------------------------RRRFPKAVAY---VDEAAR-AGEEGR 424

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            +     R  P +  +                   + G  +      +   +R    G  
Sbjct: 425 LVRTWLGRTCPPLGGEVQ----------------EEAGIPQEDEPAPSPSASRAR--GRF 466

Query: 597 LTENIVQAVS-----------RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA- 644
               +VQ  +           R               ++V   HDE++   P ++     
Sbjct: 467 TRNFVVQGAAADWTLLLLAALR-------RELHTRKAELVFFQHDEVIVHAPASEAAEIP 519

Query: 645 SMLYHLMTSNPSWAKG-LPLKA 665
           +++            G  PL+ 
Sbjct: 520 ALITEAAREATRVCFGDTPLRV 541


>gi|257055385|ref|YP_003133217.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
 gi|256585257|gb|ACU96390.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Saccharomonospora viridis DSM 43017]
          Length = 559

 Score = 70.5 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 96/355 (27%), Gaps = 71/355 (20%)

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
           +  +L + + +       +      +   L  + G+ +        + V        P  
Sbjct: 211 KLAELAERITAAFNDPTVNPDHPGSIVRALRRD-GVDVPSTRAHVLRHV------DHPAI 263

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
             +       +R         ++    DGR R     +G   +GRW+        +P+  
Sbjct: 264 APLLEY-KELARLHSAHGWAWLDQWVRDGRFRPV-YVVGGVVSGRWASRGGAALQIPK-- 319

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R CV A  G  LVVAD A +E RVLA ++
Sbjct: 320 -----------------------------LLRGCVRADPGWTLVVADAAQLEPRVLAALS 350

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
           G++   +     +     T+             D RA  K+  L+  Y G +        
Sbjct: 351 GDRRLAEVSADADLYTSLTHTLFGRTPIE----DDRARAKIAMLSAMYGGTSG------- 399

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                          +     +  A +F            +    +G       +AWR  
Sbjct: 400 ---------EAAPLLSLLRRRFPHAVSFVEHAAREGERGGLVRSRLGRTSLPPPEAWRTL 450

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                   +    +  +   +        R     V      +   ++L + R  
Sbjct: 451 TGG-----SGDENSARRAARD------WGRFTRNFVVQASAADWTAVLLATLRRR 494



 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/204 (10%), Positives = 45/204 (22%), Gaps = 27/204 (13%)

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
            +    ++    L   +    + T+     +          +      +           
Sbjct: 343 PRVLAALSGDRRLAEVSADADLYTSLTHTLFGRTPIEDDRARAKIAMLSAMYGGTSGEAA 402

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
            +    R++          +  A  +    G       R  +P     +          S
Sbjct: 403 PLLSLLRRRFPHAVSF---VEHAAREGERGGLVRSRLGRTSLPPPEAWRTLTGGSGDENS 459

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK---AG 621
            R                  R   R           +VQA + D  A  +    +   A 
Sbjct: 460 ARR---------------AARDWGR------FTRNFVVQASAADWTAVLLATLRRRLPAP 498

Query: 622 YDIVLTVHDEIVCETPDTDEFNAS 645
             +V   HDE++   P        
Sbjct: 499 AHLVFFQHDEVLVHCPTELAGQVQ 522


>gi|47934826|gb|AAT39851.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 75/238 (31%), Gaps = 51/238 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  +  ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQTTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        RS     EG KL+  D +G+E R+LA    ++       +GE  +
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNGILSGEHPH 208


>gi|68069867|ref|XP_676845.1| DNA polymerase 1 [Plasmodium berghei strain ANKA]
 gi|56496719|emb|CAH97694.1| DNA polymerase 1, putative [Plasmodium berghei]
          Length = 842

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 75/264 (28%), Gaps = 33/264 (12%)

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL- 263
           H  +   ++    + +++  L+    +     +               +    T  ++L 
Sbjct: 596 HKKSNYFNLNDHDISEKINELSNYKKNDEMNNKIKIRQYSNTINEMKRNKALQTNNKMLK 655

Query: 264 -------------SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR-LRGTLQ 309
                           K+   Q I        + +     +  L + +  + + +     
Sbjct: 656 IIIDELEKNNYIGEKEKEKIKQIINNIKLYRESKKLFQNYIENLPKHIQKNTKKIHCNFN 715

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
            LGA  TGR S      QN+   S+    +      L  +     D              
Sbjct: 716 QLGA-STGRLSCDQPNLQNI--HSKFRCTISLKFNELKPTSIQKQDIKNKSV-------- 764

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
               K L+  D   +E  V+A+++ +   LK     +    T           +VTK+ R
Sbjct: 765 ---NKNLLTFDYKQMELFVMAYLSFDNQLLKMLNNSDVFVETKVLF----NTNEVTKELR 817

Query: 430 AIGKVMELALGYQGGAKAFQKMAS 453
            + K +   + Y        K   
Sbjct: 818 RMTKTVIYGILYGQSENGLAKNLL 841


>gi|209542515|ref|YP_002274744.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530192|gb|ACI50129.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 59/205 (28%), Gaps = 36/205 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E          G+  + +   + L      D    L   +     P  L   + +
Sbjct: 26  IAVDTE--------AMGLNPHRD--RLCLVQISAGDGSAHLVQILPGTPSP-NLARLMAD 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119
             +T + H + F+  +L+    + +     ICT + ++          L  +  E L + 
Sbjct: 75  PSITKLMHFARFDVAILQHSLGVTVAP--VICTKIASKLVRTFTERHGLAQLCRELLGVD 132

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                       E       Y   DV     ++ +LE L 
Sbjct: 133 LSKQQQTSDWG-------------------APELTPEQKAYAASDVLHLHALWTKLEALL 173

Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204
            +E          +       + L 
Sbjct: 174 HREGRRDLAQACYDFLPTRARLDLL 198


>gi|255601377|ref|XP_002537664.1| DNA polymerase I, putative [Ricinus communis]
 gi|223515546|gb|EEF24720.1| DNA polymerase I, putative [Ricinus communis]
          Length = 71

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 612 EGMMNATK------AGYDIVLTVHDEIVCETPDTDEFNA-SMLYHLMTSNPSWAKGLPLK 664
             M+              +++ VHDE+V E P  +       L  LM +       +PL 
Sbjct: 1   MAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEVVREKLPELMKNVAE--LKVPLL 58

Query: 665 AEGYESKRY 673
           AE    K +
Sbjct: 59  AEVGIGKNW 67


>gi|86608835|ref|YP_477597.1| 3'-5' exonuclease family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557377|gb|ABD02334.1| 3'-5' exonuclease family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 210

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 56/202 (27%), Gaps = 26/202 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D ET   I           +   + +         V L            L + L 
Sbjct: 26  YLAVDTETMGLIP----------QRDRLCVVQIANSAGEVVLLRLSRGVKQAPFLAQLLM 75

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
              +  + H + F+  +L+    +        CT + ++          +          
Sbjct: 76  APSIEKIFHYARFDLAMLRYHLGI--RAWPVFCTKIASK----------LARTY----TS 119

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               K++++  C  E ++     +            EY   DV     +  +L  +  +E
Sbjct: 120 KHGLKDVVSELCGVELNKTAQSSDWGAVHALSAEQLEYAANDVRYLIPVRHKLAEMLRRE 179

Query: 183 QELWYLDQTINDRGYCVDVALA 204
           +      Q        V++ L 
Sbjct: 180 ERWELAQQCFQHLPTLVELDLL 201


>gi|110677766|ref|YP_680773.1| 3'- 5' exonuclease family protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453882|gb|ABG30087.1| 3'- 5' exonuclease family protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 248

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 49/177 (27%), Gaps = 27/177 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D    L            L + LE+
Sbjct: 64  VAIDCET--------MGLHPHRD--RLCVVQLSGGDGKAHLIQIAKGQTEAPNLCKLLED 113

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             V  + H   F+   +   F          CT + +R     +    + + L       
Sbjct: 114 PKVLKLFHFGRFDIAAMLNAFGATAAP--VYCTKIASRLVRTYTDRHGLAKLL------- 164

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
              + L     K +           + +       EY   DV    ++ + L  +  
Sbjct: 165 --QELLAIDISKQQQSSDWGAETLTDAQI------EYAASDVLYLHQLREALNKMLE 213


>gi|302520988|ref|ZP_07273330.1| DNA polymerase I [Streptomyces sp. SPB78]
 gi|302429883|gb|EFL01699.1| DNA polymerase I [Streptomyces sp. SPB78]
          Length = 565

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 74/499 (14%), Positives = 129/499 (25%), Gaps = 156/499 (31%)

Query: 190 QTINDRGYCVDVALAHTLNQIVDVE----------RTKLDQELESLTYGLVSSSRCLEKL 239
             +N  G          L + +  E            +L +E+       V       ++
Sbjct: 186 AELNATGLPWSAERHKDLLRELLGERYAGGGEPRGLAELAEEISRAFGRRV-RPDLPAEV 244

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
               F E G+ L        ++V        P    +     +  R       + +    
Sbjct: 245 LR-AFAEAGVKLTSTRRWELEKV------DHPAVAPLLTY-KKLYRVWTAHGWSWLADWV 296

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            +GR R      GA  +GRW+        +P+                            
Sbjct: 297 REGRFRPRYVVGGA-VSGRWTTAGGGALQIPK---------------------------- 327

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               VR  V+A  G +LVVAD A +E R+LA +AG+   L      +DLY     R+F  
Sbjct: 328 ---VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAFAG 384

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                        K+  L   Y            T+G  L   A L              
Sbjct: 385 DRD--------RAKIAVLGAIY----------GQTSGDGLKNLAAL-------------- 412

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                                          R++  +       + +A     E G+ + 
Sbjct: 413 -------------------------------RRRFPKAVAY---VDEAAR-AGEEGRLVR 437

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
               R  P +  +                   + G  +      +   +R    G     
Sbjct: 438 TWLGRTCPPLGGEVQ----------------EEAGIPQEDEPAPSPSASRAR--GRFTRN 479

Query: 600 NIVQAVS-----------RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA-SML 647
            +VQ  +           R               ++V   HDE++   P ++     +++
Sbjct: 480 FVVQGAAADWTLLLLAALR-------RELHTRKAELVFFQHDEVIVHAPASEAAEIPALI 532

Query: 648 YHLMTSNPSWAKG-LPLKA 665
                       G  PL+ 
Sbjct: 533 TEAAREATRVCFGDTPLRV 551


>gi|284991224|ref|YP_003409778.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160]
 gi|284064469|gb|ADB75407.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160]
          Length = 552

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/401 (14%), Positives = 97/401 (24%), Gaps = 132/401 (32%)

Query: 250 HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
            +ED    T +++        P    +   +   +R         ++    DGR R    
Sbjct: 229 PVEDTRSWTLEQL------DHPVVGPLLEYKR-LARLLTANGWAWLDTWVRDGRFRSWF- 280

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
             G   TGRW+       ++P                                 VR   +
Sbjct: 281 VPGGVVTGRWASNGGGALSVP-------------------------------TQVRPAAV 309

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
           A +G +LVVAD+A +E RVLA M+G                   A  +    A  T + R
Sbjct: 310 ADDGWRLVVADVAQLEPRVLAGMSG---------DDAMAEAARAADLYEGMVAAGTVETR 360

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
           A  KV  L   Y                                 +  A           
Sbjct: 361 AQAKVAILGAMYGATRG----------------ESGRIMPRLARRYPRAIGLVEQAARAG 404

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
               +    +G    R   AW                  E+ +  G+             
Sbjct: 405 ERGDVVHTLLGRGSPRPTGAW-----------------AERAVALGEP------------ 435

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                                       S       +  R   +G      +VQ    + 
Sbjct: 436 -------------------------AEVSGSPEERDRARRA--WGRFTRNFVVQGTGAEW 468

Query: 610 LAEGMMNATKAGYD------------IVLTVHDEIVCETPD 638
               + +     +             +V  +HDE+V  TP+
Sbjct: 469 ALCWLADLRNRLWRLGGTGPLEQRPHLVFFLHDEVVVHTPE 509


>gi|47934818|gb|AAT39847.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHGPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|47934828|gb|AAT39852.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 76/238 (31%), Gaps = 51/238 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        RS     EG KL+  D +G+E R+LA    ++       +GE  +
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSGEHPH 208


>gi|33300835|ref|NP_877463.1| hypothetical protein phiKMVp24 [Pseudomonas phage phiKMV]
 gi|195546667|ref|YP_002117748.1| hypothetical protein PT5_gp26 [Pseudomonas phage PT5]
 gi|195546729|ref|YP_002117807.1| hypothetical protein PT2_gp28 [Pseudomonas phage PT2]
 gi|33284806|emb|CAD44215.1| hypothetical protein [Enterobacteria phage phiKMV]
 gi|158187628|gb|ABW23105.1| conserved hypothetical phage protein [Pseudomonas phage PT5]
 gi|165880738|gb|ABY70993.1| conserved hypothetical phage protein [Pseudomonas phage PT2]
          Length = 348

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 25/193 (12%)

Query: 2   ATLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDC----VHD 50
             L +D ET         +     G+ +   D  ++ F   +     V   DC    + D
Sbjct: 94  KVLSLDIETSPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWMHTDEVIYMDCQGAPLDD 153

Query: 51  PVMPQVLKEALENTDVTIVAHNSY-FER-TVLKACFNLDIPI---HRWICTLVLARSNGL 105
             +   L + L+  D+ IV  N   F+   +    F   +P     + I TL++A+    
Sbjct: 154 LHLLVALHKLLDEADIIIV-QNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAK---- 208

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                     L+  +      K    R         L+     ++ EAW     Y   DV
Sbjct: 209 -QQFAFTSRKLEYMTHNACTIK---KRLHGKFPGFDLWAACLQDNPEAWEEMRLYNIDDV 264

Query: 166 TVTREIFKRLEPL 178
               E++  + P 
Sbjct: 265 RSMEELYILMRPW 277


>gi|254780636|ref|YP_003065049.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040313|gb|ACT57109.1| ribonuclease D [Candidatus Liberibacter asiaticus str. psy62]
          Length = 207

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 57/208 (27%), Gaps = 41/208 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+    +   + +      D  V++            L   L +
Sbjct: 23  IAVDTET--------LGLMPRRD--RLCIVQLSPGDGTVDIIRIAAGQKNAPNLVGMLVD 72

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS-------NGLPSALKAVGEAL 116
                + H   F+  VL   F + +      CT + +R        +GL   LK +   L
Sbjct: 73  EKREKIFHYGRFDIAVLFYTFGVRVRP--VFCTKIASRLTRTYTNQHGLKDNLKEL---L 127

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            ++  K ++  +                    +  +      +Y   DV     +  +  
Sbjct: 128 GINISKAQQSSDW-------------------SADDLSDEQLQYAASDVVHLHALRLQFT 168

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALA 204
               +           N      ++ L 
Sbjct: 169 EKLQRLGRSDLATSCCNFLMDRAELDLL 196


>gi|47934740|gb|AAT39808.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934806|gb|AAT39841.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L    ++  L  E       ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNMAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|77917938|ref|YP_355753.1| RNase D [Pelobacter carbinolicus DSM 2380]
 gi|77544021|gb|ABA87583.1| RNase D [Pelobacter carbinolicus DSM 2380]
          Length = 375

 Score = 69.8 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 54/200 (27%), Gaps = 41/200 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E  S        +  Y E   V L         V +     +      L   L 
Sbjct: 25  VIAVDLEADS--------LHSYQE--KVCLLQISTSTRTVLVDPLAVED--LAALAPVLA 72

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-AL-KAVGEALKLSS 120
           +  +  + H + ++   L   F +++       T++  +  G     L   + + L +  
Sbjct: 73  DPTIRKIFHAADYDIRCLFRDFRIEVQ--GLFDTMIACQMLGEKRVGLADVLAKYLDVEL 130

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +   R  +                        Y   D      + + LE    
Sbjct: 131 DKRYQRADWSKRPLE-------------------EGMILYAMEDTCHLHRLTEILEGRLR 171

Query: 181 ------KEQELWYLDQTIND 194
                   +E + L Q +  
Sbjct: 172 DMGRLSWAEEEFALLQKVRH 191


>gi|213025636|ref|ZP_03340083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 99

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 160 YCKGDVTVTREIFKRLEPLSSKE-----------QELWYLDQTINDRGYCVDVALAHTLN 208
           Y   D  VT ++  ++ P   +              L  +   +   G  +D A+ H  +
Sbjct: 1   YAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHS 60

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           + + +   +L+++   +      +    ++L+T LF +
Sbjct: 61  EEITLRLAELEKKAHDIAG-EAFNLSSTKQLQTILFEK 97


>gi|291335381|gb|ADD94995.1| type I DNA polymerase [uncultured phage MedDCM-OCT-S04-C24]
          Length = 176

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 22/186 (11%)

Query: 4   LFIDFETRSPI-DLTKCGICKYAEDVCVILFAF---GFDDHPVELWDCVHDPVMPQVLKE 59
           L  D ET   + D++            +   A      D   +   D      + + L+ 
Sbjct: 7   LIFDIETNGLLHDVST-----------IHCLAIHDLSTD-QTIAYNDTGSSEPISRGLQR 54

Query: 60  ALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
            L++ D   + HN   ++  V++  +         + TL+L+R                 
Sbjct: 55  -LQDADRI-IGHNIIGYDIPVIRKLYPWFGKPAYMVDTLLLSRLYHPDMINLDKSRTWDG 112

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEP 177
              K+     L +        E   D    ++   W +   +YC  DV VT +++K  +P
Sbjct: 113 MPLKLYGKHSLESYG--YRLDERKGDYGSTSNWTDWSQEMEDYCIQDVHVTTKLWKHFQP 170

Query: 178 LSSKEQ 183
             +  +
Sbjct: 171 YLNGSR 176


>gi|119487500|ref|ZP_01621110.1| ribonuclease D [Lyngbya sp. PCC 8106]
 gi|119455669|gb|EAW36805.1| ribonuclease D [Lyngbya sp. PCC 8106]
          Length = 208

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 26/183 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ET         G+  + +   + L         V       D      LK+ L
Sbjct: 23  DRLAVDTET--------MGLLPWRD--RLCLVQLCDPKGQVTAVKIAKDQTEAPHLKKLL 72

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E ++   V H + F+   L    ++D+      CT + ++     +    +         
Sbjct: 73  EASNTLKVFHFARFDMATLLYYLDIDVNP--VFCTKIASKLARTYTGRHGL--------- 121

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                KEL+    + E  +     +  N          Y   DV     + ++L  +  +
Sbjct: 122 -----KELVQELEQVELDKSSQSSDWGNVGNLSEDQLNYAANDVRYLLNVQQKLMVMLER 176

Query: 182 EQE 184
           E+ 
Sbjct: 177 EER 179


>gi|166365344|ref|YP_001657617.1| ribonuclease D [Microcystis aeruginosa NIES-843]
 gi|166087717|dbj|BAG02425.1| probable ribonuclease D [Microcystis aeruginosa NIES-843]
          Length = 209

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 53/213 (24%), Gaps = 35/213 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET   I               + L         V              LK+ +E+
Sbjct: 27  IAVDTETMGLIPGRD----------RLCLIQLCDPSGFVTAIRVFRGQTEAPNLKKVMED 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             +  V H + F+   L   F +        CT + ++          LK++ + L  + 
Sbjct: 77  ERIEKVFHFARFDVAQLSQTFGIATKP--IFCTKIASKLARTYTSSHGLKSLVQELEGIE 134

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                               Y   DV     +  +L  + 
Sbjct: 135 LDKTAQSSDWGN------------------AANLTPQQLSYAANDVRYLLSVRDKLIVML 176

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
              +E W L Q                   I +
Sbjct: 177 Q-REERWELAQKCFSCIPIFTALDLQQYKDIFE 208


>gi|114327365|ref|YP_744522.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
 gi|114315539|gb|ABI61599.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
          Length = 259

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 49/183 (26%), Gaps = 40/183 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC------VHDPVMPQV 56
            + ID ET         G+  + +   + L      D    L               P  
Sbjct: 70  IIAIDTET--------MGLNHHRD--RLCLIQISAGDGHAHLVQIVPERLGGKGADCP-N 118

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG 113
           LK  L N     + H + F+  +L+    + +      CT + A+          LK + 
Sbjct: 119 LKRLLSNPGCVKLMHYARFDVGILQNALGIAM--SNVKCTKIAAKLVRTFTDRHGLKDLC 176

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L            L     K +              E       Y   DV     ++ 
Sbjct: 177 RDL------------LGVEISKQQQSSDWG------APELTPEQMAYAASDVLYLHALWN 218

Query: 174 RLE 176
           RLE
Sbjct: 219 RLE 221


>gi|333025332|ref|ZP_08453396.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
 gi|332745184|gb|EGJ75625.1| putative DNA polymerase I [Streptomyces sp. Tu6071]
          Length = 555

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 74/502 (14%), Positives = 130/502 (25%), Gaps = 156/502 (31%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVE----------RTKLDQELESLTYGLVSSSRCL 236
            +   +N  G          L + +  E            +L +E+       V      
Sbjct: 173 LVAAELNATGLPWSAERHKDLLRELLGERYAGGGEPRGLAELAEEISRAFGRRV-RPDLP 231

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
            ++    F E G+ L        ++V        P    +     +  R       + + 
Sbjct: 232 AEVLR-AFAEAGVKLTSTRRWELEKV------DHPAVAPLLTY-KKLYRVWTAHGWSWLA 283

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
               +GR R      GA  +GRW+        +P+                         
Sbjct: 284 DWVREGRFRPRYVVGGA-VSGRWTTAGGGALQIPK------------------------- 317

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  VR  V+A  G +LVVAD A +E R+LA +AG+   L      +DLY     R+
Sbjct: 318 ------VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRA 371

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F               K+  L   Y            T+G  L   A L           
Sbjct: 372 FAGDRD--------RAKIAVLGAIY----------GQTSGDGLKNLAAL----------- 402

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                                             R++  +       + +A     E G+
Sbjct: 403 ----------------------------------RRRFPKAVAY---VDEAAR-AGEEGR 424

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            +     R  P +  +                   + G  +      +   +R    G  
Sbjct: 425 LVRTWLGRTCPPLGGEVQ----------------EEAGIPQEDEPAPSPSASRAR--GRF 466

Query: 597 LTENIVQAVS-----------RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNA- 644
               +VQ  +           R               ++V   HDE++   P ++     
Sbjct: 467 TRNFVVQGAAADWTLLLLAALR-------RELHTREAELVFFQHDEVIVHAPASEAAEIP 519

Query: 645 SMLYHLMTSNPSWAKG-LPLKA 665
           +++            G  PL+ 
Sbjct: 520 ALITEAAREATRVCFGDTPLRV 541


>gi|145593082|ref|YP_001157379.1| hypothetical protein Strop_0517 [Salinispora tropica CNB-440]
 gi|145302419|gb|ABP53001.1| hypothetical protein Strop_0517 [Salinispora tropica CNB-440]
          Length = 261

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 63/191 (32%), Gaps = 24/191 (12%)

Query: 2   ATLFIDFET------RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PV 52
            TL+ID ET         +     G+ +      VI  A+ +       +   H      
Sbjct: 14  RTLYIDIETAPSLAHVWGLWRQNIGLSQLLASGRVICLAWKWRGEEGVHFASEHGQGRDA 73

Query: 53  MPQVLKEALENTDVTIVAHNSY-FERTVLKACFNL--DIPIHRWICTLVLARSNGLPSAL 109
           M       L   DV +  +N   F+   L   F L   +P   +       R   L   L
Sbjct: 74  MLASAHRILGEADVVVH-YNGKRFDIPTLNRDFILAGKLPPAPF-------RQLDL---L 122

Query: 110 KAVGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           + V    + +S K+    + +    K       L+ R      EAW    EY + DVT+ 
Sbjct: 123 ETVKRRFRFTSNKLAHISQELGLEGKVKHEGHTLWVRCLAGDPEAWEQMAEYNRRDVTLL 182

Query: 169 REIFKRLEPLS 179
            ++   L P  
Sbjct: 183 EQLHDVLMPWL 193


>gi|289628944|ref|ZP_06461898.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651074|ref|ZP_06482417.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298486131|ref|ZP_07004194.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159138|gb|EFI00196.1| Ribonuclease D [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330868058|gb|EGH02767.1| ribonuclease D [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 377

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 80/296 (27%), Gaps = 46/296 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--- 60
           + +D E           +  +     ++      D     L D    P++    +     
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLID----PLLINDWRPLSAL 71

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALK 117
           LEN DV  V H    +  VL       +P+     T + A    L  ++     V E L 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLN 129

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K E   + + R                           Y   D     E+F  L P
Sbjct: 130 IDLPKGETRSDWLQRPLS-------------------ETQISYAAEDAVHLAELFAILRP 170

Query: 178 LSSKEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             S ++  W LD            VD    +   ++           L  L       +R
Sbjct: 171 RLSDDKYAWLLDDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREAR 230

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAVL 289
                +  +  E  L     T+      L   + + P+         +   ++A  
Sbjct: 231 ARNLPRNRIVREHSLWPLAKTQPDNLAALGRIEDMHPRTVRHDGEFLLELIKTAGT 286


>gi|163733026|ref|ZP_02140470.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis
           Och 149]
 gi|161393561|gb|EDQ17886.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis
           Och 149]
          Length = 204

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 52/199 (26%), Gaps = 29/199 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D    L            L + LE+
Sbjct: 20  VAIDCET--------MGLHPHRD--RLCVVQLSGGDGKAHLIQIAKGQTEAPNLCKLLED 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            +V  + H   F+   +   F          CT + +R     +    + + L       
Sbjct: 70  PNVLKLFHFGRFDIAAMLNAFGATAAP--VYCTKIASRLVRTYTDRHGLAKLL------- 120

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SK 181
              + L     K +           + +        Y   DV    ++ + L  +     
Sbjct: 121 --QELLNIDISKQQQSSDWGADTLTDAQID------YAASDVLYLHQLREALNTMLTREG 172

Query: 182 EQELWYLDQTINDRGYCVD 200
             E              +D
Sbjct: 173 RMETAQACFDFLPMRAKLD 191


>gi|312141752|ref|YP_004009088.1| DNA polymerase i pola2 [Rhodococcus equi 103S]
 gi|311891091|emb|CBH50410.1| putative DNA polymerase I PolA2 [Rhodococcus equi 103S]
          Length = 521

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 86/302 (28%), Gaps = 66/302 (21%)

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
            ++ V   ++  E+ +     V+ +   E +    F   G+ L    +   + +      
Sbjct: 184 DMLPVRLHQVTDEVSAAFGRQVNPASQPEVVAA--FAREGIELASTRKYLLREI------ 235

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P    +   R   ++       T ++A     R R      G   +GRW+        
Sbjct: 236 DHPAVEPLLRYR-DLAKLHAANGWTWLDAWVRGNRFRPVY-VPGGVVSGRWASRGGGALQ 293

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P+                                +R+ VIA  G   V+AD   +E R+
Sbjct: 294 IPK-------------------------------ALRTSVIADPGHTFVIADAGQLEPRI 322

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA M+G+     A               + +  A+V    RA  K+  L + Y   A   
Sbjct: 323 LAAMSGDPRMTAA---------AGTDDLYALVAAEVFGGDRAKAKIAILGVLYGATAG-- 371

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                                   + +  A               +   ++G AC     
Sbjct: 372 --------------EARALLTLLRKRFPVAVQLVEDAARAGERGEVVHSWLGRACPPPSD 417

Query: 509 AW 510
           +W
Sbjct: 418 SW 419


>gi|90420956|ref|ZP_01228860.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1]
 gi|90334734|gb|EAS48510.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1]
          Length = 205

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 45/165 (27%), Gaps = 16/165 (9%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET          +        + +      D   ++            +   L++
Sbjct: 20  VAIDTET----------LGLDTRRDRLCVVQLSPGDGTADVVQIAKGQSEAPNITALLKD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
              T + H + F+   L   F   +      CT + +R          LK +   +  + 
Sbjct: 70  PAKTKIFHYARFDVAALYHAFG--VMTDGIFCTKIASRLTRTYTDRHGLKDLAREMVGVD 127

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
             K ++  +  A        E         H     L+    + D
Sbjct: 128 ISKQQQSSDWAAETLSQAQVEYAASDVLYLHDIMGGLYKRLERED 172


>gi|117923642|ref|YP_864259.1| 3'-5' exonuclease [Magnetococcus sp. MC-1]
 gi|117607398|gb|ABK42853.1| 3'-5' exonuclease [Magnetococcus sp. MC-1]
          Length = 213

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 68/210 (32%), Gaps = 39/210 (18%)

Query: 1   MA--TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M    L +D ET         G+    +   + +         V +    +    P  LK
Sbjct: 24  MKSPFLAVDTET--------MGLDINRD--RLCVVQMCDVTGEVSVVQIRN-YQAP-RLK 71

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-E 114
             +E  +V  + H + F+   +K   +++I      CT + ++          LK V  E
Sbjct: 72  ALMEAPEVEKIFHFARFDLATMKRWLDIEIKP--VFCTKIASKLVRTYTGSHGLKDVSQE 129

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +   K ++  +  A     E                     +Y   DV    EI  R
Sbjct: 130 LLGVVMDKQQQSSDWGAEQLTPEQ-------------------LQYAASDVIHLVEIRAR 170

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           L  + ++E  L   D+ +      V + L 
Sbjct: 171 LVEMLAREGRLQLADEIMRFLPTRVALDLL 200


>gi|316934310|ref|YP_004109292.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris DX-1]
 gi|315602024|gb|ADU44559.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris DX-1]
          Length = 694

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 81/743 (10%), Positives = 172/743 (23%), Gaps = 123/743 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  L  D E    +D      C  A+D          D      +       +PQ L+  
Sbjct: 1   MRRLHFDIEANGFLDTVTKVHCVNAKD---------LDTKEKFAF---GPDQIPQALE-- 46

Query: 61  LENTDVTIVAH-NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA-LKL 118
           L +     +AH    ++  VL+      +       + ++A+                  
Sbjct: 47  LLDKADEGIAHFGLGYDFLVLEKLHGFKLKKAT--DSFIIAKLMRPSQKDADTALVKAGR 104

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K+  GK  I  +            +  +  E      E C+ DV V   ++  L+P 
Sbjct: 105 LPGKLH-GKHSIEAWG-YRLGVQKLHADIEDWSEFTPEMQERCESDVDVQDALWDWLKPD 162

Query: 179 ------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E  +  L + +   G   D   A  L+  +  ++  +  +L +        
Sbjct: 163 AYSQRAIELEHRIARLCRRMEAAGVWFDQEAAQKLHVALLGKQEHIANDLIAEFGSWYEP 222

Query: 233 SRC-----------------LEKLKTWLFLETGLHLED-----LTETTCQRV-------- 262
            +                   ++     + +  + +        T TT   V        
Sbjct: 223 EKKGMGPDGFAQTWTPKKADPKRGYWGHYEQVEVPVTTFDPFEGTPTTITSVKRVFKGYP 282

Query: 263 ---LSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD--GRLRGTLQFLGASR-- 315
              +            +                +    ++ D    L  T          
Sbjct: 283 LTKIERVTFNPSSRKHIIKKLKEMGWEPQEFTESGEAKVDDDVLEGLTDTFPQASKLVEY 342

Query: 316 -------TGRWSGCVFPPQNLPRPSRSHEELDQI------ITHLPTSITSDPDPLQIISD 362
                       G     + +    + H  +D +       +H   ++   P        
Sbjct: 343 LLLDKRLGQLADGDNAWLKKVHDDGKMHGAMDTMGTVHSRASHFSPNMGQVPAAKSPYGA 402

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R+                GI+     W   ++  ++       L +   A   +    
Sbjct: 403 ECRALFGP-----------NGIDTHTAGWGGEKEEIVQVGADMSGLQLRALAHLLHPLDG 451

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
               D    G V              Q M    G       H    N   E+      + 
Sbjct: 452 GAYSDIVTSGDVH---------WSHTQAMGLV-GPEEPRDKHSELHNILREKGAKTFGYS 501

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                  P+         T  +     W     R  +      +   +   + +     +
Sbjct: 502 YLFGCFPPKSGRVVRDCLTTAKNKNPEWGYLFDRFFKAM--TTKGAIRIRSDKEVGTVVR 559

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           +     + + +    L   L          + +      +                    
Sbjct: 560 KSFDERLKLGRLHAKLKACLKHY-KNHLPGLDDRLVPCRSEHS-----------ALNFAC 607

Query: 603 QAVSRDILAEGMMN----ATKAGY------DIVLTVHDEIVCETPDTDEFNA-SMLYHLM 651
            ++   +  + + +        GY       ++L VHDE       +        L    
Sbjct: 608 SSIEAILCKQWLCDSVSALEAKGYVWGRDFVLMLWVHDEQQIACRKSIAEEVGKTLVECA 667

Query: 652 TSN-PSWAKGLPLKAEGYESKRY 673
                     +PL +E    + +
Sbjct: 668 KQAGVKLGFRVPLASEYKIGRNW 690


>gi|308178280|ref|YP_003917686.1| DNA polymerase I [Arthrobacter arilaitensis Re117]
 gi|307745743|emb|CBT76715.1| putative DNA polymerase I [Arthrobacter arilaitensis Re117]
          Length = 549

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 105/436 (24%), Gaps = 117/436 (26%)

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA 273
           +     Q+L +       +    ++L   L  + G  +     +     L       P  
Sbjct: 199 KLAAKAQQLATALGTPGLNPDSPQELLRALH-KAGFAV----SSVRAWELEQL--NHPLI 251

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +V     + SR A    +  ++    +GR       LG   +GRW+        LP   
Sbjct: 252 AEVLEY-KKLSRLASTHGDAWLDQWVKNGRFHPHY-VLGTVTSGRWAASGGGALQLP--- 306

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                         +R  V   EG   VVAD   +E R+LA ++
Sbjct: 307 ----------------------------HSIRQVVRTREGSTFVVADGRQLEPRILAAIS 338

Query: 394 GEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAS 453
            +Q   KA +             +           R   K+  L++ Y            
Sbjct: 339 NDQQLQKAGQQ---------DDLYQWLLDAKLVASRNDAKLGMLSVIY------------ 377

Query: 454 TTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                    A      +    +  A  F         +      F+G  C          
Sbjct: 378 ----GGGGGASGAVGAALTRSFPTAMRFVEQAAATGQQGGGVRSFLGRGCP--------- 424

Query: 514 HSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDV 573
                +         ++  +      AR R      ++ +       ++  G +      
Sbjct: 425 -PADEQWLAGQKATSDEASQRAADSAARARGRFTRNFVVQATAAEWALVWMGHARHLI-- 481

Query: 574 GNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIV 633
                         +R                   I  +            V  VHDEIV
Sbjct: 482 ---------HQAGWSR-------------------ICKQ------------VFFVHDEIV 501

Query: 634 CETPDTDEFNASMLYH 649
            E P         +  
Sbjct: 502 FECPTGLAPQLQEVIR 517


>gi|325672986|ref|ZP_08152680.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707]
 gi|325556239|gb|EGD25907.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707]
          Length = 521

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 86/302 (28%), Gaps = 66/302 (21%)

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
            ++ V   ++  E+ +     V+ +   E +    F   G+ L    +   + +      
Sbjct: 184 DMLPVRLHQVADEVSAAFGRQVNPASQPEVVAA--FAREGIELASTRKYLLREI------ 235

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
             P    +   R   ++       T ++A     R R      G   +GRW+        
Sbjct: 236 DHPAVEPLLRYR-DLAKLHAANGWTWLDAWVRGNRFRPVY-VPGGVVSGRWASRGGGALQ 293

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P+                                +R+ V+A  G   V+AD   +E R+
Sbjct: 294 IPK-------------------------------ALRTSVVADPGHTFVIADAGQLEPRI 322

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           LA M+G+     A               + +  A+V    RA  K+  L + Y   A   
Sbjct: 323 LAAMSGDPRMTAA---------AGTDDLYALVAAEVFGGDRAKAKIAILGVLYGATAG-- 371

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
                                   + +  A               +   ++G AC     
Sbjct: 372 --------------EARALLTLLRKRFPVAVQLVEDAARAGERGEVVHSWLGRACPPPSD 417

Query: 509 AW 510
           +W
Sbjct: 418 SW 419


>gi|254409855|ref|ZP_05023636.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196183852|gb|EDX78835.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 207

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 26/201 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET   I         Y  D  + L         V +            LK+ LE 
Sbjct: 25  IAVDTETMGLI---------YQRD-RLCLVQLCDPQDRVTVIRIDKKQTEAPNLKQLLEA 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             V  V H + F+  +L+   ++ +      CT + ++     +    +           
Sbjct: 75  QTVLKVFHFARFDLAILRQNLDIYVQP--VFCTKIASKLARTYTNRHGL----------- 121

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+L+    + E  +     +  N          Y   DV     + ++L  +  +E+
Sbjct: 122 ---KDLVMDLEQVELDKSSQSSDWGNPNNLSDEQLRYAANDVRYLLSVRQKLITMLQREE 178

Query: 184 ELWYLDQTINDRGYCVDVALA 204
                 +        V + L 
Sbjct: 179 RWQLAQECFEALSVMVSLDLL 199


>gi|118591451|ref|ZP_01548849.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM
           12614]
 gi|118436123|gb|EAV42766.1| putative DNA polymerase III epsilon chain [Stappia aggregata IAM
           12614]
          Length = 237

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 44/159 (27%), Gaps = 32/159 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--- 57
           M  +  D ET         G  +  E   V L                    MP+     
Sbjct: 1   MREISFDTETTGLNP---RGGDRLVEIGGVELINH-VATGKSYHVYINPQRDMPEEAFRV 56

Query: 58  ----------KEALE---NTDVTIVA------HNSYFERTV----LKACFNLDIPIHRWI 94
                     K   E   +  +  V       HN+ F+       L+      IP  + +
Sbjct: 57  HGLSVEFLSDKPLFEHVADEFLEFVGDATLVIHNAAFDMGFINMELERAGRRTIPNSQVL 116

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL LAR        +L A+     + + K  +   L+ 
Sbjct: 117 DTLDLARRKHPSGPNSLDALCSRYGIDNSKRIKHGALLD 155


>gi|307105222|gb|EFN53472.1| hypothetical protein CHLNCDRAFT_136747 [Chlorella variabilis]
          Length = 911

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 66/233 (28%), Gaps = 36/233 (15%)

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
              ++  +  +   +  + +  L   +   G   D  L     ++     +++++E   L
Sbjct: 657 ETMQQEMQARQASLAATRAVAALLAQMEGAGLGFDPWLLREAGRVARSHMSRIEEECAEL 716

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLT-----ET---TCQRVLSSNKKLTPQAIQVF 277
                 +    ++L   L+    L           +T   T ++ L + + L+P    V 
Sbjct: 717 AGRP-FNPASPQQLAEVLYSVLKLPPPTGRGRSSAKTHLRTDEQALEALRPLSPLPGLVL 775

Query: 278 NNRMRASRSAVLKLNT--------------LVEAMNSDG----RLRGTLQFLGASRTGRW 319
             R      +   +                   A    G    R+        ++ TGR 
Sbjct: 776 EYR-ALQNFSSKWVEADWCRAAAAGFESADAYAAARPGGGGWPRVHCCWHQ-TSTATGRL 833

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
           S      Q   R + +   +  +  H    +  D   +           +A E
Sbjct: 834 SSSAPNLQARSRMAAAGGAVLVVHLHDELLVEVDARQVD-------GAWVAQE 879



 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 621 GYDIVLTVHDEIVCETPDTDEF---NASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           G  +V+ +HDE++ E           A  L  +M         +PL  +    +++ 
Sbjct: 851 GAVLVVHLHDELLVEVDARQVDGAWVAQELRRVMEGVVQ--LRVPLAVKVKAGEQWG 905


>gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
 gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
          Length = 382

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 51/182 (28%), Gaps = 27/182 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL    +  + E   V L   G +     L D +    +   LK    +  V  V H +
Sbjct: 33  VDLEADSLHHFTE--KVCLIQIGVN-GDAFLIDPLALSDL-SSLKPFFADPGVIKVLHGA 88

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELIA 131
            ++   L   F + I       + + +R  G         V     ++  K         
Sbjct: 89  DYDVRSLYRDFGITI--TGLFDSEIASRFLGVQSTGLNDVVNRRFGVTMDK--------- 137

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                        ++             Y   DV    +++ +L+    +     ++ + 
Sbjct: 138 ---------GCRKQDWTQRPLP-EKMLSYAALDVRYLVDLYHQLQNELQQMGRAEWVAEE 187

Query: 192 IN 193
             
Sbjct: 188 CE 189


>gi|47934824|gb|AAT39850.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQVTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|162147898|ref|YP_001602359.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786475|emb|CAP56057.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
          Length = 210

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 36/177 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E          G+  + +   + L      D    L   +     P  L   + +
Sbjct: 26  IAVDTE--------AMGLNPHRD--RLCLVQISAGDGSAHLVQILPGTPSP-NLARLMAD 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKLS 119
             +T + H + F+  +L+    + +     ICT + ++          L  +  E L + 
Sbjct: 75  PSITKLMHFARFDVAILQHSLGVTVAP--VICTKIASKLVRTFTERHGLAQLCRELLGVD 132

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             K ++  +                       E       Y   DV     ++ +LE
Sbjct: 133 LSKQQQTSDWG-------------------APELTPEQKAYAASDVLHLHALWTKLE 170


>gi|47934614|gb|AAT39745.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934636|gb|AAT39756.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934640|gb|AAT39758.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934764|gb|AAT39820.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934772|gb|AAT39824.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934774|gb|AAT39825.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934778|gb|AAT39827.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934810|gb|AAT39843.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934832|gb|AAT39854.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|254388656|ref|ZP_05003889.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|197702376|gb|EDY48188.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 562

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/462 (14%), Positives = 115/462 (24%), Gaps = 131/462 (28%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +L  E+ +     V      + LK   F   G+ L        + +        P 
Sbjct: 198 RRLAELADEVSAAFGRRVRPELSADVLKA--FARAGVRLRSTRRWELEGI------DHPA 249

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +     +  R  V      ++    DGR R      G + +GRW+        +P+ 
Sbjct: 250 VPPLLEY-KKLYRIWVAHGWGWLQDWVRDGRFRPAY-QPGGAVSGRWTTLGGGALQIPK- 306

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R  V+A  G +LVVAD+  +E RVLA +
Sbjct: 307 ------------------------------VIRRAVVADAGWRLVVADVDQMEPRVLAAV 336

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   ++     +DLY             +     R   K+  L   Y           
Sbjct: 337 SRDPGLMEVAAHEDDLYTRLS--------DRAFSGDREQAKLALLGAVY----------G 378

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            T+G  L   A L                                             R+
Sbjct: 379 QTSGDGLKNLAAL---------------------------------------------RR 393

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKR---RDVPLVYMKKDKNNLILMLPSGRSLV 569
           +          + +A     E         R   R V      +         P+G    
Sbjct: 394 RFPAAVAY---VDEAARAGEEGRLVRTWLGRTSPRAVGRDGDDEAGIPQEAPDPAG---- 446

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA----------EGMMNATK 619
               G   +   T     +     G      +VQ  + D              GM     
Sbjct: 447 DPAAGAGPATGFTPGYASSDARARGRFTRNFVVQGSAADWALLLLAAVRQALVGM----- 501

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLM-TSNPSWAKG 660
              ++V   HDE++   P  +             +    A G
Sbjct: 502 -RAELVFFQHDEVIVHCPADEADAVVEAVRQAGETAGEVAFG 542


>gi|294813269|ref|ZP_06771912.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
 gi|326441791|ref|ZP_08216525.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325868|gb|EFG07511.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064]
          Length = 571

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/462 (14%), Positives = 115/462 (24%), Gaps = 131/462 (28%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +L  E+ +     V      + LK   F   G+ L        + +        P 
Sbjct: 207 RRLAELADEVSAAFGRRVRPELSADVLKA--FARAGVRLRSTRRWELEGI------DHPA 258

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +     +  R  V      ++    DGR R      G + +GRW+        +P+ 
Sbjct: 259 VPPLLEY-KKLYRIWVAHGWGWLQDWVRDGRFRPAY-QPGGAVSGRWTTLGGGALQIPK- 315

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R  V+A  G +LVVAD+  +E RVLA +
Sbjct: 316 ------------------------------VIRRAVVADAGWRLVVADVDQMEPRVLAAV 345

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   ++     +DLY             +     R   K+  L   Y           
Sbjct: 346 SRDPGLMEVAAHEDDLYTRLS--------DRAFSGDREQAKLALLGAVY----------G 387

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            T+G  L   A L                                             R+
Sbjct: 388 QTSGDGLKNLAAL---------------------------------------------RR 402

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKR---RDVPLVYMKKDKNNLILMLPSGRSLV 569
           +          + +A     E         R   R V      +         P+G    
Sbjct: 403 RFPAAVAY---VDEAARAGEEGRLVRTWLGRTSPRAVGRDGDDEAGIPQEAPDPAG---- 455

Query: 570 YRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILA----------EGMMNATK 619
               G   +   T     +     G      +VQ  + D              GM     
Sbjct: 456 DPAAGAGPATGFTPGYASSDARARGRFTRNFVVQGSAADWALLLLAAVRQALVGM----- 510

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYHLM-TSNPSWAKG 660
              ++V   HDE++   P  +             +    A G
Sbjct: 511 -RAELVFFQHDEVIVHCPADEADAVVEAVRQAGETAGEVAFG 551


>gi|317968782|ref|ZP_07970172.1| ribonuclease [Synechococcus sp. CB0205]
          Length = 225

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 54/200 (27%), Gaps = 28/200 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E          G+    +   + L     D   V             +LKE +E 
Sbjct: 41  LAVDTE--------AMGLIHGRD--RLCLVQISDDHDNVCCIRIHRGQTEAPLLKELMEA 90

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  V H + F+   L     LDI +    CT + +R     +    +           
Sbjct: 91  AGIEKVFHFARFDVAALA--EGLDIHVSPIFCTKIGSRLARTYTNRHGL----------- 137

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+L+   C  E  +     +     E       Y   DV        RL  +    +
Sbjct: 138 ---KDLVNELCHVELDKGAQSSDWGRVEELSESQLAYAANDVRYLLAARTRLIEML--VR 192

Query: 184 ELWYLDQTINDRGYCVDVAL 203
           E              V   L
Sbjct: 193 EERLDLAQRCFACIPVISDL 212


>gi|254505241|ref|ZP_05117392.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
 gi|222441312|gb|EEE47991.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11]
          Length = 223

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 53/178 (29%), Gaps = 21/178 (11%)

Query: 9   ETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66
           ET S +  D    G+  + +   + +      D   ++            L     +   
Sbjct: 34  ETASAVAVDSETLGLNPHRD--RLCVVQLSPGDGSADVVQIARGQTEAPNLAALFTDAAK 91

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
             + H + F+  VL+    + +      CT + ++            +   L   K    
Sbjct: 92  PKIFHFARFDVAVLRHYLGIHVTP--VWCTKIASKLVR------TYTDRHGL---KDITR 140

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           + L     K +           + + A      Y   DV    ++  +LE +  +E+ 
Sbjct: 141 ELLGVELSKQQQSSDWAAETLSDAQLA------YAASDVLHLHDLKAKLEMMLEREER 192


>gi|323359890|ref|YP_004226286.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
 gi|323276261|dbj|BAJ76406.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains
           [Microbacterium testaceum StLB037]
          Length = 499

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/445 (14%), Positives = 105/445 (23%), Gaps = 103/445 (23%)

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
            G  ++  L     Q +     +    + +      +S     +L   L    GL +E  
Sbjct: 113 HGELLERQLGERRGQALPARIEEAAGRVRAALDDPAASLDSQPRLLKSLH-RVGLFVEST 171

Query: 255 TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
           +               P    + +   +  R       T +     DGR R      G  
Sbjct: 172 SRWELAE------HDHPVVAPLVSY-KKLMRLYTANGWTWMSEWVRDGRFRPVYVPAGV- 223

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
            TGRW+        +PR                                +R  V A  G 
Sbjct: 224 VTGRWASSGGGALQIPR-------------------------------QLRVAVRADPGW 252

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
            LV AD+A +E RVLA MA +     A    +                      RA  K+
Sbjct: 253 TLVTADVAQLEPRVLAAMARDTALADAARRRDLYSGV---------VEAGAVATRAEAKI 303

Query: 435 MELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
             L   Y                                 +  A            E  +
Sbjct: 304 AMLGAMYGATTG----------------ESGRLLPRLRRTFPRAMALVDHAARVGEEGGV 347

Query: 495 EDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR--RDVPLVYMK 552
              ++G       +AWR     V     +   +        ++   R R  R+  +    
Sbjct: 348 VSTWLGRTSPGPGEAWRA----VQSRAGDAEASGIDETRARRSARDRGRFTRNFVVQGTA 403

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
            +     L    GR      V    +   +      R                       
Sbjct: 404 AEWALAWLADLRGRLAALEPVDAADAAPRSGPVFGRRP---------------------- 441

Query: 613 GMMNATKAGYDIVLTVHDEIVCETP 637
                      +   +HDEI+  TP
Sbjct: 442 ----------HLAFFLHDEIIVHTP 456


>gi|33322741|gb|AAQ07105.1|AF496417_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis]
          Length = 101

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 29/127 (22%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA--SEGKKLVVADLAG 383
            QN+P  +   +                          +R   +    +G  +   D + 
Sbjct: 1   LQNIPTRTEEGK-------------------------QIRKAFVPSSPDGY-IYSCDYSQ 34

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV-APAQVTKDQRAIGKVMELALGYQ 442
           IE RVLA ++ +    +AF+TG D++  T  + F++ +  +VT  Q    K +   + Y 
Sbjct: 35  IELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQXRRAKAVNFGIVYG 94

Query: 443 GGAKAFQ 449
                  
Sbjct: 95  ISDXGLS 101


>gi|70728873|ref|YP_258622.1| ribonuclease D [Pseudomonas fluorescens Pf-5]
 gi|68343172|gb|AAY90778.1| ribonuclease D [Pseudomonas fluorescens Pf-5]
          Length = 377

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 72/274 (26%), Gaps = 39/274 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E           +  +     ++      D     L D +      Q L   LEN
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQRAYLIDPLTIDN-WQPLAALLEN 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKLSS 120
             V  V H    +  VL               T + A    L  ++     V E L +  
Sbjct: 75  PAVVKVVHACSEDLEVLLRLTGSL--PAPLFDTQLAAAYLNLGFSMGYSRLVQEVLGIDL 132

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K E   + + R                           Y   D     ++F  L P  S
Sbjct: 133 PKGETRSDWLQRPLSETQVS-------------------YAAEDAVHLAQVFTELRPRLS 173

Query: 181 KEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           +++  W L+            VD    +   ++           L  L       +R   
Sbjct: 174 EDKYRWVLEDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARARN 233

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
             +  +  E  L     T+      L+  + + P
Sbjct: 234 LPRNRIVREHALWPLAKTQPDNLSALAKIEDMHP 267


>gi|47934782|gb|AAT39829.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934784|gb|AAT39830.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934796|gb|AAT39836.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934804|gb|AAT39840.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934820|gb|AAT39848.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|47934780|gb|AAT39828.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|47934626|gb|AAT39751.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 200

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|172035932|ref|YP_001802433.1| ribonuclease D [Cyanothece sp. ATCC 51142]
 gi|171697386|gb|ACB50367.1| ribonuclease D [Cyanothece sp. ATCC 51142]
          Length = 214

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 27/191 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID ET   I           +   + L         V            + LK+ L
Sbjct: 30  KAIAIDTETMGLIP----------QRDRLCLVQLCDPSGYVTAIRIEKGQQTAENLKQLL 79

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           EN ++  + H + F+    K  F ++       CT V ++          +         
Sbjct: 80  ENQNIIKIFHYARFDVAQFKYNFAIETEP--IFCTKVASK----------LARTY----T 123

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                K L+      E  +     +  N +        Y   DV     + ++L  +   
Sbjct: 124 GSHGLKALVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLKEQLITMLQ- 182

Query: 182 EQELWYLDQTI 192
            +E W L Q  
Sbjct: 183 REERWELAQKC 193


>gi|330877463|gb|EGH11612.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 307

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 81/295 (27%), Gaps = 44/295 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD--CVHDPVMPQVLKEAL 61
           + +D E           +  +     ++      D     L D   ++D    Q L   L
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLIND---WQPLSALL 72

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKL 118
           EN DV  V H    +  VL       +P+     T + A    L  ++     V E L +
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLNI 130

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K E   + + R                           Y   D     E+F  L P 
Sbjct: 131 DLPKGETRSDWLQRPLS-------------------ETQISYAAEDAVHLAELFSILRPR 171

Query: 179 SSKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            S ++  W LD            VD    +   ++           L  L       +R 
Sbjct: 172 LSDDKYAWLLDDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARA 231

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAVL 289
               +  +  E  L     T+      L   + + P+         +   ++A  
Sbjct: 232 RNLPRNRIVREHSLWPLAKTQPDNLAALGRIEDMHPRTVRHDGEFLLELIKTAGT 286


>gi|29366719|ref|NP_813764.1| putative DNA polymerase [Pseudomonas phage gh-1]
 gi|29243578|gb|AAO73157.1|AF493143_18 putative DNA polymerase [Pseudomonas phage gh-1]
          Length = 709

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 78/272 (28%), Gaps = 47/272 (17%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN-S 73
           D+   G+ +  +          F        +      + + L+      D  IV HN  
Sbjct: 5   DIETNGLLETVDKFHCATIQDWFTGQYTRFNEATFGDYI-KALEAEAAKPDGLIVFHNGI 63

Query: 74  YFERTVL----KACFN--LDIPIHRWICTLVLARSNGL---------------------P 106
            ++   L    +  F   L+IP  + + TLVL R                          
Sbjct: 64  KYDIPALDKLKRQYFGKRLNIPRKKVLDTLVLVRLIHSNIRDRDAGLMRSGILPGKMFGS 123

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            +L+A G   +L   K E   + + +                      +   +YC+ DV 
Sbjct: 124 HSLEAWG--YRLGEMKGEYKHDFMRQLEADGGVYTPGLEW----AVCNQAMEDYCEQDVR 177

Query: 167 VTREIFKRLE------------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
           VT ++ ++L                  E    +    +   G+  D+  A  L   +   
Sbjct: 178 VTSKLLRKLMEDSHYFVDGQAIECVRMEHAAAWTLAQMERNGFPFDLEGAERLYAELAGI 237

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
           R  L  +L              E+ +  +  +
Sbjct: 238 RQDLLTKLIKTFGSWYQPKGGTEQFRHPVSDK 269



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/448 (8%), Positives = 88/448 (19%), Gaps = 117/448 (26%)

Query: 231 SSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +      +   L           ++        VL   +   P+         +     
Sbjct: 322 FNPTSRPHIIKMLKKAGWEPSEFTDNGAPKVDDEVLEHVRVDDPEKQAAIELIQKRIGML 381

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR-SHEELDQIITHL 346
               N  ++ +  DG + G++   GA  TGR +        +P  S         +    
Sbjct: 382 AEGDNAWIKLVGEDGAMHGSINPNGAG-TGRATHAYPNMGQVPSASATYGPHCRALFGAT 440

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
                   + +                   V  D +G+E R L                 
Sbjct: 441 HAKKRRGWEKVVQ-----------------VGTDASGLELRCLGHY-------------- 469

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
                           +       +            G   +    +   +  +      
Sbjct: 470 -----------GAPFDEGRYADTVL-----------NGDIHWVNGKAAGIIKFDERDKHN 507

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
           + +           +                      + +KK + +    +S L   +  
Sbjct: 508 EEHERVRGIAKTFIYAFLYGAGDELVGSFVGGGKKEGKALKKDFMENTPAISGLQGAIAD 567

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                 +  +A                      L    GR +  R   +           
Sbjct: 568 QLITEQKWNQATR----------RFDIKWKRRWLRGLDGRKIHVRSPHS----------- 606

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL-------------------- 626
                         ++Q+    I  + ++        I++                    
Sbjct: 607 ----------ALNFLLQSAGAIICKKWVVEVE----RILMEEHGLYHGWYKDDGTPGDFC 652

Query: 627 ---TVHDEIVCETP-DTDEFNASMLYHL 650
               VHDE+             + +   
Sbjct: 653 YMAWVHDELQIAARTPEIAEIVAKVAQQ 680


>gi|110636308|ref|YP_676516.1| 3'-5' exonuclease [Mesorhizobium sp. BNC1]
 gi|110287292|gb|ABG65351.1| 3'-5' exonuclease [Chelativorans sp. BNC1]
          Length = 205

 Score = 69.0 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 47/177 (26%), Gaps = 27/177 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            L   L N
Sbjct: 21  VAIDTET--------LGLNPHRD--RLCVVQLSPGDGTADVVQIAAGQRRAPNLVALLRN 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H + F+  VL    +  +      CT + +R                L   K 
Sbjct: 71  RRITKLFHYARFDIAVL--YHSFGVMPDPVFCTKIASRL---TRTYTD---RHGL---KD 119

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
              + L     K +             +       EY   DV     +   L+    
Sbjct: 120 ICYELLQVNLSKAQQSSDWAAEQLTPEQ------LEYAASDVLYLHRLADVLQQRLM 170


>gi|182677567|ref|YP_001831713.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633450|gb|ACB94224.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 204

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 33/213 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            ++ +D ET         G+  + +   + L      D    L            L+  L
Sbjct: 18  RSVAVDTET--------LGLLPHRD--RLCLVQLSGGDGQAHLVQIKPGQTHAPHLERLL 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKL 118
            + +VT + H + F+  VL   F          CT + ++          LK +   L  
Sbjct: 68  IDPNVTKLFHYARFDIAVLYKTFG--TMTTPLYCTKIASKLTRTYTDRHGLKDLAREL-- 123

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L     K +           + +        Y   DV     +  +L+ +
Sbjct: 124 ----------LGVDLSKQQQSSDWGADTLSDAQ------LTYAASDVLHLHALRTKLDGM 167

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             +E          +       + LA      +
Sbjct: 168 LEREHRTELAQACFDFLPTRAKLDLAGWAETDI 200


>gi|149408172|ref|YP_001294606.1| hypothetical protein ORF013 [Pseudomonas phage PA11]
          Length = 624

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/520 (10%), Positives = 134/520 (25%), Gaps = 100/520 (19%)

Query: 55  QVLKEALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK 110
             ++    N  +    HN   ++   ++   ++ +   + + TL L+           L 
Sbjct: 35  DKMRSFFRNAKIIG-GHNIYRYDIPNIERLLDIKVEC-KLVDTLPLSWYLEPARKRHGLA 92

Query: 111 AVGEALKLSSQKMEEGKEL------------IARFCKGETHECLYDRNKPNHREAWRLFG 158
             GE   +   K+++ + L            +    K    +           +    F 
Sbjct: 93  EWGEEFGVPKPKVDDWENLAVEEYIHRCEEDVKINTKLWERQWKQLSKLYGEPDKVWKFI 152

Query: 159 EY--CKGDVTVT-----REIFKRLEPLSSKE---------------QELWYLDQTINDRG 196
           +Y   K D          ++       + K+                    +  +     
Sbjct: 153 DYIMFKMDCAAEQERSRWKLDVVHCKTTLKKLEKLKEEKVEELRLAMPHVPVMASKEKPK 212

Query: 197 YCVDVALAHTLNQIVDVERTKLDQE---------LESLTYGLVSSSRCLEKLKTWLFLET 247
                   +TL++        L+++         +E +      +    E++K+WL+   
Sbjct: 213 KMYLKNKPNTLSEQGKAWVALLEEQGLPEDYEGVVEYIKDWKEPNPGSHEQIKSWLYSLG 272

Query: 248 GLHLE---DLTETTCQ----RVLSSNKKLTP-QAIQVFNNRMRASRSAVLKLNTLVEAMN 299
            +         + T +      +  +K L P     V     +  +  +  L+ L    +
Sbjct: 273 WVPETFAYKRNKETGEVKKIEQVQQDKTLGPGLCASVKKLYGKEPKLEI--LDGLSILTH 330

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
               L G L                   +        + L   +      + + P   + 
Sbjct: 331 RISVLNGFLN---------------NVDDEGYVQAKVQGLTNTLRFKHEVVVNLPGVDKP 375

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +R C++A +G +LV +D++ +E R                         +      
Sbjct: 376 YGADIRGCLVAPKGYELVGSDMSSLEDRCKQHYM-------------------WPYDPEY 416

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
               +  D      +   A        A                       A  +   + 
Sbjct: 417 VKEMIKPDFDPHLDLAVFA-------GALSSHEVELYKAGFLKKEEEGLVKAIRKVYKSV 469

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE 519
           N+        P  AI          ++  A+ Q++  V  
Sbjct: 470 NYACVYGAGGPRVAITAGVTMDEGYKLVDAYWQRNWSVKR 509


>gi|83313031|ref|YP_423295.1| ribonuclease D [Magnetospirillum magneticum AMB-1]
 gi|82947872|dbj|BAE52736.1| Ribonuclease D [Magnetospirillum magneticum AMB-1]
          Length = 203

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 60/205 (29%), Gaps = 35/205 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET               +   + +      D    +            L   L +
Sbjct: 20  VAIDSETMGLN----------LQRDRLCVVQLSAGDGHAHVVHYPKPEWNSPNLVRMLAD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVG-EALKLS 119
           + VT + H + F+  +++      +      CT + ++    N    +LK +  E L + 
Sbjct: 70  SKVTKLFHFARFDVAMIRRYLG--VRCTPVFCTKIASKLTRTNTEGHSLKVLCKEFLNID 127

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K+++  +                       E       Y   DV    ++  RL+ L 
Sbjct: 128 LSKLQQSSDWG-------------------APELTADQLAYAASDVLYLHQLKDRLDALL 168

Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204
            +E      +          ++ LA
Sbjct: 169 DREGRRALAEACFAFLPDRAELDLA 193


>gi|115653109|ref|XP_001198503.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus
           purpuratus]
 gi|115960717|ref|XP_001189337.1| PREDICTED: similar to exosome component 10 [Strongylocentrotus
           purpuratus]
          Length = 819

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 51/180 (28%), Gaps = 34/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y    C++  +         + D +      Q+L +A 
Sbjct: 284 KEIAVDLE--------HHSYRSYLGFTCLMQISTA---EHDYVVDTLELRSELQMLNDAF 332

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKA-VGEALKLS 119
            +  +  V H +  +   L+      + +     T   +RS G    +L + +    ++ 
Sbjct: 333 TDPKIVKVFHGANMDIDWLQRDLG--LYVVNMFDTHQASRSLGFPHHSLASLLSRYCQVE 390

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R  P           Y + D      I+  ++   
Sbjct: 391 ADKQYQLADW-------------RIRPLP------EEMLHYAREDTHYLLYIYHTMKNEL 431


>gi|47934768|gb|AAT39822.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|88856925|ref|ZP_01131576.1| DNA polymerase A [marine actinobacterium PHSC20C1]
 gi|88813801|gb|EAR23672.1| DNA polymerase A [marine actinobacterium PHSC20C1]
          Length = 517

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 79/304 (25%), Gaps = 94/304 (30%)

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
              L  +S   RS +I  +G   +  D    E  V A ++ ++   +A  T +       
Sbjct: 286 GPALTSLSKKYRSLIIPEDGAVFISLDFDRAEPTVAAALSQDEGLQEALSTTDVYRELAV 345

Query: 414 ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
                 A        RA  K + L + Y  GA+   +                       
Sbjct: 346 KVFGEQAREDDIA--RATCKTIFLGILYGRGAQGLSQQL--------------------- 382

Query: 474 EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
                                             ++       ++     L        E
Sbjct: 383 -----------------------GISKAEATETIRSVWDSFPALNAYCEGLKADAIAGKE 419

Query: 534 NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
                                     L  P GR L   + G  ++               
Sbjct: 420 --------------------------LRTPWGRLLPVPNRGPYQTP-------------- 439

Query: 594 GGKLTENIVQAVSRDILAEGMMN-ATKAGY-DIVLTVHDEIVCETPDTDEF-NASMLYHL 650
                  ++QA + D+   G+ N     G   + L +HDEI+ ++   D F ++++L   
Sbjct: 440 -----NLMIQASAADVFYVGLKNVVELLGADRLTLPIHDEILLQSSQGDVFRSSALLEEA 494

Query: 651 MTSN 654
           MT  
Sbjct: 495 MTVP 498


>gi|71735861|ref|YP_273799.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556414|gb|AAZ35625.1| ribonuclease D [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 377

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 81/295 (27%), Gaps = 44/295 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD--CVHDPVMPQVLKEAL 61
           + +D E           +  +     ++      D     L D   ++D    Q L   L
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLIND---WQPLSALL 72

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKL 118
           EN DV  V H    +  VL       +P+     T + A    L  ++     V E L +
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLNI 130

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K E   + + R                           Y   D     E+F  L P 
Sbjct: 131 DLPKGETRSDWLQRPLS-------------------ETQISYAAEDAVHLAELFSILRPR 171

Query: 179 SSKEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            S ++  W LD            VD    +   ++           L  L       +R 
Sbjct: 172 LSDDKYAWLLDDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARA 231

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAVL 289
               +  +  E  L     T+      L   + + P+         +   ++A  
Sbjct: 232 RNLPRNRIVREHSLWPLAKTQPDNLAALGRIEDMHPRTVRHDGEFLLELIKTAGT 286


>gi|330959294|gb|EGH59554.1| ribonuclease D [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 377

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 80/295 (27%), Gaps = 46/295 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--- 60
           + +D E           +  +     ++      D     L D    P++    +     
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGKSAWLID----PLLINDWRPLSAL 71

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALK 117
           LEN  V  V H    +  VL       +P+     T + A    L  ++     V E L 
Sbjct: 72  LENPAVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLN 129

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K E   + + R                           Y   D     E+F  L P
Sbjct: 130 IDLPKGETRSDWLQRPLS-------------------ETQISYAAEDAVHLAELFAILRP 170

Query: 178 LSSKEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             S ++  W LD            VD    +   ++           L  L       +R
Sbjct: 171 RLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREAR 230

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAV 288
                +  +  E  L     T+      L+  + + P+         +   ++A 
Sbjct: 231 ARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|47934792|gb|AAT39834.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|47934822|gb|AAT39849.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|119513593|ref|ZP_01632605.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
 gi|119461746|gb|EAW42771.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
          Length = 189

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 57/209 (27%), Gaps = 27/209 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET   +           +   + L      +  V              LK  +E 
Sbjct: 7   IAVDTETMGLLP----------QRDRLCLVQLCNPEGKVTAIRIAKGQTEAPNLKILMEA 56

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            +V  + H + F+   L+    + +      CT + ++     +    +           
Sbjct: 57  VNVVKIFHFARFDIATLRHNLGIQVQP--VFCTKIASKLARTYTNRHGL----------- 103

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              KE++      E  +     +  N          Y   DV     + ++L  +    +
Sbjct: 104 ---KEVVQELEHIELDKSSQSSDWGNAANLSEAQLNYAANDVRYLISVRQKLMEMLQ-RE 159

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           E W + Q        +          + +
Sbjct: 160 ERWEIAQECFQVLPTLVTLDLLQFKDLFE 188


>gi|58584866|ref|YP_198439.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419182|gb|AAW71197.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 206

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 34/205 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            ++ +D E          G+    +   + L    F+D    L    +D   P  L++ L
Sbjct: 20  RSIAVDTE--------AMGLLHVRD--RLCLIQLSFNDGNAHLIQFKNDYAAP-NLRKIL 68

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKL 118
            + ++T + H + F+ +++      +       CT + +R         +LK +   L  
Sbjct: 69  GDKNITKIFHFARFDVSIICYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL-- 124

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L  +  K +        N             Y   DV    +I ++L+ +
Sbjct: 125 ----------LDTKLNKQQQSSDWGSENLT------DKQKSYAASDVLYLHKIKEKLDLM 168

Query: 179 SSKEQELWYLDQTINDRGYCVDVAL 203
             +E       +        V++ L
Sbjct: 169 LERENRKELAQKCFEFLPIRVELDL 193


>gi|330975291|gb|EGH75357.1| ribonuclease D [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 377

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 81/295 (27%), Gaps = 46/295 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--- 60
           + +D E           +  +     ++      D     L D    P++    +     
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLID----PLLINDWRPLSAL 71

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALK 117
           LEN DV  V H    +  VL       +P+     T + A    L  ++     V E L 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLD 129

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K E   + + R                           Y   D     E+F  L P
Sbjct: 130 IDLPKGETRSDWLQRPLS-------------------ETQISYAAEDAVHLAELFTILRP 170

Query: 178 LSSKEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             S ++  W LD            VD    +   ++           L  L       +R
Sbjct: 171 RLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREAR 230

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAV 288
                +  +  E  L     T+      L+  + + P+         +   ++A 
Sbjct: 231 ARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|257483935|ref|ZP_05637976.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320325216|gb|EFW81283.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327790|gb|EFW83798.1| ribonuclease D [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330989388|gb|EGH87491.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331013134|gb|EGH93190.1| ribonuclease D [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 377

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 81/295 (27%), Gaps = 44/295 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD--CVHDPVMPQVLKEAL 61
           + +D E           +  +     ++      D     L D   ++D    Q L   L
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLIND---WQPLSALL 72

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKL 118
           EN DV  V H    +  VL       +P+     T + A    L  ++     V E L +
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLNI 130

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K E   + + R                           Y   D     E+F  L P 
Sbjct: 131 DLPKGETRSDWLQRPLS-------------------ETQISYAAEDAVHLAELFSILRPR 171

Query: 179 SSKEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            S ++  W LD            VD    +   ++           L  L       +R 
Sbjct: 172 LSDDKYAWLLDDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARA 231

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAVL 289
               +  +  E  L     T+      L   + + P+         +   ++A  
Sbjct: 232 RNLPRNRIVREHSLWPLAKTQPDNLAALGRIEDMHPRTVRHDGEFLLELIKTAGT 286


>gi|213021568|ref|ZP_03336015.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 70

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 613 GMMNATKA------GYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKA 665
            M+              +++ VHDE+V E    D    +  ++ LM +       +PL  
Sbjct: 1   AMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLV 58

Query: 666 EGYESKRY 673
           E    + +
Sbjct: 59  EVGSGENW 66


>gi|296537397|ref|ZP_06899246.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
 gi|296262276|gb|EFH09052.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957]
          Length = 217

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 51/182 (28%), Gaps = 38/182 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVHDPVMPQ--VL 57
            + ID ET         G+    +   + L      D     V++              L
Sbjct: 28  VVAIDTET--------MGLDPRRD--RLCLVQLSAGDGNAHCVQIIPESLGGRGADCPNL 77

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE 114
           K  L   DV  + H + F+  +L+A   ++       CT + A+          LK +  
Sbjct: 78  KALLTRPDVVKLFHFARFDVAILRAALGIECAP--VRCTKIAAKLVRTFTDRHGLKDLCR 135

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L            L     K +              E       Y   DV     ++ +
Sbjct: 136 EL------------LGVEISKQQQSSDWG------APELTPEQLAYAASDVLHLHALWAK 177

Query: 175 LE 176
           LE
Sbjct: 178 LE 179


>gi|302187116|ref|ZP_07263789.1| ribonuclease D [Pseudomonas syringae pv. syringae 642]
          Length = 377

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 81/295 (27%), Gaps = 46/295 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--- 60
           + +D E           +  +     ++      D     L D    P++    +     
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLID----PLLINDWRPLSAL 71

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALK 117
           LEN DV  V H    +  VL       +P+     T + A    L  ++     V E L 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLD 129

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K E   + + R                           Y   D     E+F  L P
Sbjct: 130 IDLPKGETRSDWLQRPLS-------------------ETQISYAAEDAVHLAELFTILRP 170

Query: 178 LSSKEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             S ++  W LD            VD    +   ++           L  L       +R
Sbjct: 171 RLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREAR 230

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAV 288
                +  +  E  L     T+      L+  + + P+         +   ++A 
Sbjct: 231 ARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|291335901|gb|ADD95496.1| type I DNA polymerase [uncultured phage MedDCM-OCT-S08-C41]
          Length = 179

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 64/189 (33%), Gaps = 20/189 (10%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L  D E+   +D   C  C    D  V             +++   D        + +E+
Sbjct: 2   LVFDLESNGLLDDVTCIHCLVIHDTEV---------DETYVYNDQGDQEAITRGVQLIED 52

Query: 64  TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARS-----NGLPSALKAVGEA-- 115
            ++    HN   ++   L+  +    P    + TL+L+R        +    K  G+   
Sbjct: 53  AEII-CGHNVIGYDIPCLQKIYPWFNPKGLVVDTLLLSRLYHADMLIIDRGDKVKGKYVG 111

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             K     M     L +   + +  +  + ++    +   +   +YC  DV VT ++   
Sbjct: 112 KFKGMPSPMWGRHSLESYGYRLKEFKGSFGKDTDW-QNWSQEMQDYCVQDVNVTTKLCDH 170

Query: 175 LEPLSSKEQ 183
            +P  +  +
Sbjct: 171 FQPYLTGSR 179


>gi|56750860|ref|YP_171561.1| ribonuclease D [Synechococcus elongatus PCC 6301]
 gi|81299489|ref|YP_399697.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942]
 gi|56685819|dbj|BAD79041.1| probable ribonuclease D [Synechococcus elongatus PCC 6301]
 gi|81168370|gb|ABB56710.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942]
          Length = 211

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 50/184 (27%), Gaps = 26/184 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E          G+  + +   + L                    +   L+   E+
Sbjct: 29  IAIDTE--------AMGLNFHRD--RLCLVQLCDSAGITTCVRIAQGQTVAPNLQALCED 78

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T V H + F+ T LK    + +      CT + ++     S+   +           
Sbjct: 79  PQITKVFHFARFDITALKHGLGIAVQP--IFCTKIASKLARTYSSQHGL----------- 125

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K L+      E  +     +  N          Y   DV        +L  +  +E 
Sbjct: 126 ---KSLLQELVGVELDKTAQSSDWGNAAALSHEQMRYACNDVRYLLAAQAKLTTMLQREG 182

Query: 184 ELWY 187
               
Sbjct: 183 RWQL 186


>gi|330900086|gb|EGH31505.1| ribonuclease D [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 377

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 81/295 (27%), Gaps = 46/295 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--- 60
           + +D E           +  +     ++      D     L D    P++    +     
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLID----PLLINDWRPLSAL 71

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALK 117
           LEN DV  V H    +  VL       +P+     T + A    L  ++     V E L 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLD 129

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K E   + + R                           Y   D     E+F  L P
Sbjct: 130 IDLPKGETRSDWLQRPLS-------------------ETQITYAAEDAVHLAELFTILRP 170

Query: 178 LSSKEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             S ++  W LD            VD    +   ++           L  L       +R
Sbjct: 171 RLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREAR 230

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAV 288
                +  +  E  L     T+      L+  + + P+         +   ++A 
Sbjct: 231 ARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|78224579|ref|YP_386326.1| 3'-5' exonuclease [Geobacter metallireducens GS-15]
 gi|78195834|gb|ABB33601.1| 3'-5' exonuclease [Geobacter metallireducens GS-15]
          Length = 382

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 56/186 (30%), Gaps = 27/186 (14%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           E     DL    +  Y E   V L  F        +       + P  L     N  +  
Sbjct: 27  EPYVACDLEADSMHHYQE--KVCLIQFTVPGLAAIVDPLAVADLAP--LAPVFANPSIRK 82

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKA-VGEALKLSSQKMEEG 126
           V H + ++   L   F +++       T++  +  G     L A + +   +   K  + 
Sbjct: 83  VFHGADYDIRSLHRDFGIEVN--NLFDTMIACQFLGEREFGLAAVLRKRFGVELDKQYQR 140

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
            +   R                          EY   D T+  E+  RLE    ++  + 
Sbjct: 141 ADWSRRPLTAG-------------------MIEYAAKDTTLLIELCGRLEAELREKGRIG 181

Query: 187 YLDQTI 192
           ++++  
Sbjct: 182 WVEEEC 187


>gi|148260666|ref|YP_001234793.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
 gi|146402347|gb|ABQ30874.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5]
          Length = 218

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 61/211 (28%), Gaps = 40/211 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVHDPVMPQ--VL 57
            + +D ET         G+    +   + L      D+    V++              L
Sbjct: 28  VVAVDTET--------MGLDPRRD--RLCLVQLSAGDNSAHLVQIVPPALGGRGADCPNL 77

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE 114
           K  LE+  VT + H + F+  +L     +       ICT + ++          LK +  
Sbjct: 78  KRLLEHPGVTKLFHFARFDLAMLHHALGVTTAP--VICTKIASKLVRTYTDRHGLKDLCR 135

Query: 115 AL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            L  +   K ++  +  +     E                      Y   DV     I+ 
Sbjct: 136 DLVGIEISKQQQTSDWGSAELSPEQ-------------------CAYAASDVLHLHAIWA 176

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           RLE L  +E      D           + L 
Sbjct: 177 RLEALLVREGRRELADACYRFLPARAKLDLL 207


>gi|302840032|ref|XP_002951572.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f.
           nagariensis]
 gi|300263181|gb|EFJ47383.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f.
           nagariensis]
          Length = 1461

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 10/88 (11%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVL 99
                       +    K   E+  V  V HN  F+R VL+    + I    +   TL +
Sbjct: 744 DGRYVRLKPHHPILDEFKRFFEDESVKKVWHNYGFDRHVLEN---MGICCAGFGGDTLHM 800

Query: 100 ARSNGLPSA------LKAVGEALKLSSQ 121
           AR      +      L  +     +   
Sbjct: 801 ARLADASRSGRRTYGLDNLTADHNIMRH 828



 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 38/142 (26%), Gaps = 28/142 (19%)

Query: 272  QAIQVFNNRMRASRSAVLKLNTLVEAM--------NSDGR-------LRGTLQFLGASRT 316
             A++         +     +  L            N  GR        R        + T
Sbjct: 1331 IAVEALCEINAIEKLLSAFIIPLQSDATSTTTVLPNPPGRDTPSRAVHRVHCSLNINTET 1390

Query: 317  GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE--GK 374
            GR S        +           ++          +   L+     VR    A    G 
Sbjct: 1391 GRLSARRHVCCEM-----------RLHISAVVPNLQNQPALEKDRYKVRRAFTADTEGGN 1439

Query: 375  KLVVADLAGIEARVLAWMAGEQ 396
             LVVAD   +E R+LA M   Q
Sbjct: 1440 TLVVADYGQLELRILAHMTNCQ 1461


>gi|238899051|ref|YP_002924733.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466811|gb|ACQ68585.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 130

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           +  ++  + G  L    +     VL     L     ++   R +  +++  K   L   +
Sbjct: 1   MMDYISHDLGYPLMQFDKAILGEVLKD-DTLPDTDRRLIEIRQQLGKTSTAKYAALKALV 59

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL---DQIITHLPTSITSDPD 355
            +D R  G L + GA  TGRWSG  F PQNLPRPS  + ++        +         D
Sbjct: 60  MNDHRAHGLLMYHGA-STGRWSGRHFQPQNLPRPSFKNTDVCIELFQYQNAQLLEMIYND 118

Query: 356 PLQIISDCVR 365
            ++ +S C+R
Sbjct: 119 SMEALSSCLR 128


>gi|159030499|emb|CAO91403.1| rnd [Microcystis aeruginosa PCC 7806]
          Length = 209

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 56/213 (26%), Gaps = 35/213 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET   I               + L         V              LK+ +E+
Sbjct: 27  IAVDTETMGLIPGRD----------RLCLIQLCDPSGFVTAIRIFRGQTEAPNLKKVMED 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             +  V H + F+   L   F +        CT + ++          LK++ + L  + 
Sbjct: 77  ERIEKVFHFARFDVAQLSQTFGIATQP--IFCTKIASKLARTYTSSHGLKSLVQELEGIE 134

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                 N    +        Y   DV     +  +L  + 
Sbjct: 135 LDKTAQSSDW------------GNAVNLTPKQ------LSYAANDVRYLLSVRDKLI-VM 175

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            + +E W L Q                   I +
Sbjct: 176 MQREERWELAQKCFSCIPIFTALDLQQYKDIFE 208


>gi|330974089|gb|EGH74155.1| ribonuclease D [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 377

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 81/295 (27%), Gaps = 46/295 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--- 60
           + +D E           +  +     ++      D     L D    P++    +     
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLID----PLLINDWRPLSAL 71

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALK 117
           LEN DV  V H    +  VL       +P+     T + A    L  ++     V E L 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLD 129

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K E   + + R                           Y   D     E+F  L P
Sbjct: 130 IDLPKGETRSDWLQRPLSETQVS-------------------YAAEDAVHLAELFTILRP 170

Query: 178 LSSKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             S ++  W LD            VD    +   ++           L  L       +R
Sbjct: 171 RLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREAR 230

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAV 288
                +  +  E  L     T+      L+  + + P+         +   ++A 
Sbjct: 231 ARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|47934830|gb|AAT39853.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVKQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|260906871|ref|ZP_05915193.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Brevibacterium linens BL2]
          Length = 613

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/383 (13%), Positives = 99/383 (25%), Gaps = 78/383 (20%)

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
            +T +  L            +   + + SR         ++   S+GR R      G   
Sbjct: 261 ASTSKWELQE--SNHAAIAPLLEYKKQ-SRLLSANGWAWLDEWVSEGRYRPVY-VPGGVV 316

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           TGRW+        +PR                                +R  + A  G +
Sbjct: 317 TGRWAASGGGALQIPR-------------------------------QLRPALRADPGWR 345

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           L+ AD+A +E R LA M+G++   +A    +                +     R   K+ 
Sbjct: 346 LISADVAQLEPRALAAMSGDRAMAEAGRGRDLYSGL---------VDEGIVATRQEAKIA 396

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
            L   Y                                 +  A        E      + 
Sbjct: 397 VLGAMYGSTTG----------------DSGRLVPRLRTSFPAAMGLVDSAAEVGAAGGVV 440

Query: 496 DLFIGTACERVKKAWRQKHSRVSEL---WNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
             ++G +     + WR+  S  ++      + ++A     + G+       +     +  
Sbjct: 441 STWLGRSSPVPGEGWRRVQSAANQFDATPADENRARRAAGDQGRFTRNFVVQGTAAEWAL 500

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
               +L L L          + +      +         + G  +          D    
Sbjct: 501 AWLADLRLRLSQ-----LPAIDDGNPGATSAVDGDGGTTSAGETM------GHVAD---- 545

Query: 613 GMMNATKAGYDIVLTVHDEIVCE 635
                      +V  +HDE++  
Sbjct: 546 ASGPVFSRRAHLVFFLHDEVIVH 568


>gi|296115075|ref|ZP_06833717.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769]
 gi|295978412|gb|EFG85148.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769]
          Length = 215

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 57/205 (27%), Gaps = 37/205 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ--VLKEAL 61
           + +D ET         G+  + +   + L      D    L              +   L
Sbjct: 27  VAVDTET--------MGLNPHRD--RLCLVQLSDGDGHAHLVQVPAGATAADFPNMLAVL 76

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKL 118
            +  VT + H + F+  +L+  F + +     ICT + ++          L  +   L  
Sbjct: 77  TDPSVTKLMHFARFDVAILQYTFGITVAP--CICTKIASKLVRTYTERHGLAHLCREL-- 132

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L     K +              +       Y   DV     ++ RLE L
Sbjct: 133 ----------LGVELSKQQQSSDWG------APDLTPEQMTYAASDVLYLHALWARLEAL 176

Query: 179 S--SKEQELWYLDQTINDRGYCVDV 201
                 +EL             +D+
Sbjct: 177 LVREGRRELAQACYDFMPTRARLDI 201


>gi|111223189|ref|YP_713983.1| putative DNA polymerase I [Frankia alni ACN14a]
 gi|111150721|emb|CAJ62422.1| putative DNA polymerase I [Frankia alni ACN14a]
          Length = 669

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 75/276 (27%), Gaps = 60/276 (21%)

Query: 191 TINDRGYCVDVALAHTLNQIV--------DVERTKLDQELESLTYGL--VSSSRCLEKLK 240
            +   G  VD A A TL   +          E     +    +   L      R    ++
Sbjct: 278 ELERDGLPVDRATAETLLADLVGPPPRTDADELAARRRRDAPVLAHLRGPVDLRNPAAVR 337

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE-AMN 299
             L    G+ + D         L   +   P    +   R    R A    +  ++  + 
Sbjct: 338 AAL-RTVGVDVPDTRSG----RLEPLRDAHPAVAALLAWRRT-ERIATTYGHRWLDTHVG 391

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            DGRLRG       +     +       NLP                             
Sbjct: 392 PDGRLRGAWHGSDGAAGRMTAQAG--LHNLP----------------------------- 420

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
               +R  V+A  G+  V ADL  IE RVLA ++ +     A +                
Sbjct: 421 --ADLRCAVVAEPGRVFVRADLGQIEPRVLAVVSADPALAAATQA----------DDMYA 468

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTT 455
             A      RA  KV  LA  Y     A  +     
Sbjct: 469 PVAAQLGRDRAHAKVAMLAAMYGQTTGAAGEALRRM 504



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 15/185 (8%)

Query: 457 LNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR 516
           ++ +                 A+             A        A     +  R+ +  
Sbjct: 451 VSADPALAAATQADDMYAPVAAQLGRDRAHAKVAMLAAMYGQTTGAAGEALRRMRRAYPT 510

Query: 517 VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                     A +    +G+ +     R V L       +      P G +        +
Sbjct: 511 ----ALAYLDAADAAGRSGRDLRTYGGRLVRLAPAAGPPDRAAGP-PRGLTDPAPPDEAS 565

Query: 577 RSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEI 632
            +    T +   R           ++Q  + ++     +         G +IVL +HDE+
Sbjct: 566 PAVGGVTEQARGRFARNA------VIQGPAAELFKAWAVTVRAELPALGGEIVLCLHDEL 619

Query: 633 VCETP 637
           +   P
Sbjct: 620 LLHVP 624


>gi|307943000|ref|ZP_07658345.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
 gi|307773796|gb|EFO33012.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4]
          Length = 206

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 53/187 (28%), Gaps = 27/187 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET     L             + +      D   ++            L   L +
Sbjct: 22  VAVDTETLGLNLLRD----------RLCVVQLSPGDGSADVVQIEKGMTAAPNLTALLSD 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
              T + H + F+  +L+    + +      CT + ++            +   L   K 
Sbjct: 72  PARTKIFHYARFDVAILRQNLGIHVDP--VWCTKIASKLCR------TYTDRHGL---KD 120

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L     K +           + + A      Y   DV     + ++LE +  +E+
Sbjct: 121 ITRELLGVDISKQQQSSDWAAEQLTDAQLA------YAASDVLHLHALKEKLEFMLRREE 174

Query: 184 ELWYLDQ 190
                + 
Sbjct: 175 RTHLAEA 181


>gi|195970213|ref|NP_384368.2| hypothetical protein SMc00342 [Sinorhizobium meliloti 1021]
 gi|307306427|ref|ZP_07586171.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C]
 gi|307319314|ref|ZP_07598743.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83]
 gi|187904130|emb|CAC41699.2| Probable ribonuclease D [Sinorhizobium meliloti 1021]
 gi|306895150|gb|EFN25907.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83]
 gi|306902269|gb|EFN32866.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C]
          Length = 208

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 50/208 (24%), Gaps = 27/208 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++            L   L +
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSSGDGTADVIRISAGQKQAPNLVSMLAD 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H   F+  VL   F +        CT + +R          +           
Sbjct: 74  PTRQKIFHFGRFDIAVLFHTFGVTASP--VFCTKIASR----------LARTYTDRHGLK 121

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           +  KEL+      +     +               EY   DV     +  +L     ++ 
Sbjct: 122 DNLKELLDIDISKQQQSSDWA-----ADILSPAQLEYAASDVLHLHALRDKLTARLLRDG 176

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIV 211
            +   +   +       + L       +
Sbjct: 177 RMELAEACFSFLPTRAKLDLLGWEEADI 204


>gi|66044808|ref|YP_234649.1| ribonuclease D [Pseudomonas syringae pv. syringae B728a]
 gi|63255515|gb|AAY36611.1| Ribonuclease D [Pseudomonas syringae pv. syringae B728a]
          Length = 377

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 81/295 (27%), Gaps = 46/295 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--- 60
           + +D E           +  +     ++      D     L D    P++    +     
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLID----PLLINDWRPLSAL 71

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALK 117
           LEN DV  V H    +  VL       +P+     T + A    L  ++     V E L 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLD 129

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K E   + + R                           Y   D     E+F  L P
Sbjct: 130 IDLPKGETRSDWLQRPLSETQVS-------------------YAAEDAVHLAELFTILRP 170

Query: 178 LSSKEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             S ++  W LD            VD    +   ++           L  L       +R
Sbjct: 171 RLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREAR 230

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAV 288
                +  +  E  L     T+      L+  + + P+         +   ++A 
Sbjct: 231 ARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|294675670|ref|YP_003576285.1| ribonuclease D [Rhodobacter capsulatus SB 1003]
 gi|294474490|gb|ADE83878.1| ribonuclease D-1 [Rhodobacter capsulatus SB 1003]
          Length = 204

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 45/165 (27%), Gaps = 16/165 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+    +   + L      D    L            L   L 
Sbjct: 19  VVAIDTET--------MGLDPRRD--RLCLVQMSSGDGHAHLVQIAKGQTEAPRLCAMLA 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           +  V  + H + F+   L   F +        CT + ++          LK + + L  +
Sbjct: 69  DPKVEKLFHFARFDIAALYNAFGVVTAP--VFCTKIASKMVRTFTDRHGLKYLLQDLVGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
              K ++  +  A        +         H+    L     + 
Sbjct: 127 DVSKQQQTSDWGAAELTAAQLDYAASDVLYLHQLKAALVTRLARE 171


>gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter sp. FRC-32]
 gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter sp. FRC-32]
          Length = 390

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 52/192 (27%), Gaps = 31/192 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D E  S        +  Y E   V L           +            L   L
Sbjct: 40  NILAFDLEADS--------LHHYTE--KVCLIQVSNLSQTALIDPLAPVD--LSPLAPVL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H + ++   L   F L++       T++  +  G       +  ALK    
Sbjct: 88  ADRGIRKVFHGADYDMRSLYRDFGLEV--CNMFDTMIACQFLGEKEV--GLAAALK---- 139

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                K       K         R             EY K D  +   ++ +LE     
Sbjct: 140 -----KRFGVELNKKYQKADWSKRPFS------AEMIEYAKMDTALLIRLYLQLEEELRA 188

Query: 182 EQELWYLDQTIN 193
           +  L ++++   
Sbjct: 189 KGRLEWVEEESE 200


>gi|150398650|ref|YP_001329117.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419]
 gi|150030165|gb|ABR62282.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419]
          Length = 208

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 50/202 (24%), Gaps = 29/202 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++            L   L +
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSSGDGTADVIRIAAGQKQAPNLVAMLSD 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H   F+  VL   F +        CT + +R          +           
Sbjct: 74  PARQKIFHFGRFDIAVLFHTFGVTASP--VFCTKIASR----------LARTYTDRHGLK 121

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLF-GEYCKGDVTVTREIFKRLEPLSSKE 182
           +  KEL+              ++     +       EY   DV     +  +L     ++
Sbjct: 122 DNLKELLD------VDISKQQQSSDWAADILSPAQLEYAASDVLHLHALRDKLTARLLRD 175

Query: 183 QELWYLDQTINDRGYCVDVALA 204
             +   +   +       + L 
Sbjct: 176 GRMELAEACFSFLPTRAKLDLL 197


>gi|269958513|ref|YP_003328300.1| 3'-5' exonuclease [Anaplasma centrale str. Israel]
 gi|269848342|gb|ACZ48986.1| 3'-5' exonuclease [Anaplasma centrale str. Israel]
          Length = 204

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 17/167 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D ET          +        V L      D    L     D   P  L+  +
Sbjct: 18  NVVAVDTET----------MGLVCRRDRVCLVQLSSGDGDAHLVKFSGDYSAP-NLRRIV 66

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALK 117
            N D+  + H + F+   ++ CF +        CT + +R          LK +  E L 
Sbjct: 67  SNPDIMKIFHFARFDVAAIRHCFGMW--ATPCYCTKIASRLVRTYTNHHGLKDLCYELLG 124

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           +   K ++  +        E            H    +L     + D
Sbjct: 125 VKINKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKKKLDMMLERED 171


>gi|222084303|ref|YP_002542832.1| RNAse D protein [Agrobacterium radiobacter K84]
 gi|221721751|gb|ACM24907.1| RNAse D protein [Agrobacterium radiobacter K84]
          Length = 208

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 53/209 (25%), Gaps = 29/209 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   I               + +      D   ++            L   L +
Sbjct: 24  IAIDTETLGLIP----------RRDRLCVVQLSPGDGTADIIRIASGQSQAPNLVAMLAD 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           T    + H   F+  VL   F +        CT + +R            +   L     
Sbjct: 74  TTRQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLCR------TYTDRHGLKDN-- 123

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLF-GEYCKGDVTVTREIFKRLEPLSSKE 182
              KEL+      E       ++     E       EY   DV     +  +L     ++
Sbjct: 124 --LKELL------EVDISKAQQSSDWAAEKLSPAQLEYAASDVLYLHALRDKLTARLVRD 175

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIV 211
             + + +           + L       +
Sbjct: 176 GRMEHAEACFAFLPTRAKLDLLGWEEADI 204


>gi|47934766|gb|AAT39821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 71/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKVRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPS-------------------- 154

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 155 ----VPAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|298290361|ref|YP_003692300.1| 3'-5' exonuclease [Starkeya novella DSM 506]
 gi|296926872|gb|ADH87681.1| 3'-5' exonuclease [Starkeya novella DSM 506]
          Length = 210

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 27/202 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + + +CV+  + G     V        P     L+  L +
Sbjct: 24  VAIDTET--------LGLNPHRDRLCVVQLSPGDGTADVVQIPAGAGPGSAPNLEALLTD 75

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H + F+  VL   F L +      CT + +R                L     
Sbjct: 76  PRITKLFHFARFDVAVLGKTFGLTVAP--VWCTKIASRL---TRTYTD---RHGL----- 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKE 182
              KEL+              ++     E       +Y   DV     + ++L  + +++
Sbjct: 123 ---KELVRELI--GVDLSKQQQSSDWAAEELSEAQLQYAASDVLYLHALREKLASMLARD 177

Query: 183 QELWYLDQTINDRGYCVDVALA 204
                             + LA
Sbjct: 178 GRTELAQSCFEFLPTRAKLDLA 199


>gi|47934790|gb|AAT39833.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 71/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKVRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P                     
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPS-------------------- 154

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 155 ----VPAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|159475852|ref|XP_001696028.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
 gi|158275199|gb|EDP00977.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii]
          Length = 498

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 57/234 (24%), Gaps = 67/234 (28%)

Query: 39  DHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           D  V   D   +          +    K   E+  V  V HN  F+R VL+    +    
Sbjct: 208 DTEVAFIDVTSETPVRLKPHHPILAEFKRFFEHAGVKKVWHNYGFDRHVLEN-MGIAAAG 266

Query: 91  HRWICTLVLARSNGLPSA------LKAV---------------------------GEALK 117
                TL +AR      +      L ++                            EAL 
Sbjct: 267 FG-GDTLHMARLADASRSGKKTYGLDSLTSDRDVSGGVWDGGGGGTWLGSSPGAKAEALV 325

Query: 118 LSSQKMEEG-KELIARFCKGETHECLYDRNKPNHREAWR-----LFGEYCKGDVTVTREI 171
               + + G KE    +              P HR          + +Y   D   T ++
Sbjct: 326 RDMVRAKLGMKERFGMYRLRGDGPAKVPELPPIHRLHDHPRFRPTWIDYSALDAKATWQL 385

Query: 172 FKRLEPLSS------------------KEQELWYLDQTINDRGYCVDVALAHTL 207
            + LE                          +  L   +  RG  V+       
Sbjct: 386 REALEAKLRAERVSSSSCTCGTSTAPIGWTLVRELLTEMERRGMMVNREHLRQA 439


>gi|332708965|ref|ZP_08428935.1| DNA segregation ATPase FtsK/SpoIIIE family protein [Lyngbya
           majuscula 3L]
 gi|332352154|gb|EGJ31724.1| DNA segregation ATPase FtsK/SpoIIIE family protein [Lyngbya
           majuscula 3L]
          Length = 890

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 59/210 (28%), Gaps = 33/210 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-----GFDDHPVELWDCVHDPVMPQV 56
             L++D E                 +  + L          +     + D +  P + + 
Sbjct: 20  KILWLDTE----------IADWNTPNPRLSLIQVLADPTDINGDKAYILDVLDQPEIVKD 69

Query: 57  LKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
                + N ++  V HN+ F+              +   CT             K +   
Sbjct: 70  FVNYIMVNPNIEKVFHNASFDL----RYLGGKEQANNVTCT----YQIARKLTNKKLSNP 121

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD----VTVTREI 171
           L++S+ K+   K L    C     +     +    R   +    Y K D      V R +
Sbjct: 122 LQVSNHKL---KTLALELCNFANVDTEEQSSDWGKRPLTQKQLNYAKMDTVYLAHVHRRL 178

Query: 172 FKRLEPLSSKEQELWYLD--QTINDRGYCV 199
            +  +  S   +++      Q      + V
Sbjct: 179 LEISDKNSWSREQMVPRLRTQKAESPCFSV 208


>gi|295426489|ref|ZP_06819139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295063857|gb|EFG54815.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 308

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 582 TTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDE 641
            T ++ +R  TYG KL ENIV+A SRD+LAE M         IV+ +HD  V + P   +
Sbjct: 4   NTVKKWSRIETYGAKLVENIVKAASRDLLAEAMRRLEATSNSIVMHIHDFAVIDAP--AD 61

Query: 642 FNASMLYHLMTS 653
            +   +  +MT 
Sbjct: 62  RSLEKIVKIMTD 73


>gi|76810908|ref|YP_333055.1| hypothetical protein BURPS1710b_1651 [Burkholderia pseudomallei
           1710b]
 gi|76580361|gb|ABA49836.1| 34L [Burkholderia pseudomallei 1710b]
          Length = 262

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 68/209 (32%), Gaps = 41/209 (19%)

Query: 1   MA---TLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGFDDHP-VELWDC--- 47
           M     L +D ET         +      + +   + C++ F   + D P V   D    
Sbjct: 1   MKKPRILSLDIETSPILAYVWSLWKQNVSLGQIHSEWCILSFCAKWLDDPRVIYHDTSRQ 60

Query: 48  ---VHDPVMPQVLKEALENTDVTIVAHN-SYFERT-VLKACFNLDIPI---HRWICTLVL 99
                D  + + L   L +    +VA N   F+   +      L +P     + + TLV 
Sbjct: 61  RNKEDDRRIVRKLWRLL-DQADIVVAQNGIKFDAKKIQARFLLLGMPPPSPFKVVDTLVE 119

Query: 100 ARSNGL--PSALKAVGEAL----KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR +     + L+ + E L    K        G EL     KG             + EA
Sbjct: 120 ARKHFGFTSNKLEWLTEKLCKKHKKKKHAKFPGFELWRECLKG-------------NLEA 166

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           W    EY   DV    E++  L P     
Sbjct: 167 WAEMKEYNVEDVLSLEELYLVLRPWMQGH 195


>gi|68171372|ref|ZP_00544766.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657845|ref|YP_507797.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67772422|gb|AAY79412.1| ribonuclease D [Ehrlichia chaffeensis]
 gi|67999197|gb|EAM85853.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599302|gb|ABD44771.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 204

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 56/188 (29%), Gaps = 36/188 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            T+ +D ET          +        + +      +    L   +     P  L   L
Sbjct: 18  NTVAVDTET----------MGLVCRRDKLCVVQLCDSNGETHLVKFLGSYQAP-NLVSVL 66

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALK 117
            ++ +T + H + F+  V++    +        CT + ++          LK +  E L 
Sbjct: 67  SDSSITKIFHFARFDIAVIRYYLGVW--ATPCYCTKIASKLVRTYTDHHGLKELCYELLN 124

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   KM++  +        E                      Y   DV     +  +L+ 
Sbjct: 125 VKLNKMQQSSDWGKETLTSEQLN-------------------YAASDVIYLHALKNKLDA 165

Query: 178 LSSKEQEL 185
           +  +E + 
Sbjct: 166 MLQRENKQ 173


>gi|46201483|ref|ZP_00054962.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 203

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 60/205 (29%), Gaps = 35/205 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET               +   + +      D    +            L   L +
Sbjct: 20  VAIDSETMGLN----------LQRDRLCVVQLSAGDGHAHVVHYPKPEWNSPNLVRMLAD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVG-EALKLS 119
             VT + H + F+  +++      +  +   CT + ++    N    +LK +  E L + 
Sbjct: 70  PKVTKLFHFARFDVAMIRKYLG--VRCNPLFCTKIASKLTRTNTEGHSLKVLCKEFLNID 127

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K+++  +                       E       Y   DV    ++  RL+ L 
Sbjct: 128 LSKLQQSSDWG-------------------APELNADQLAYAASDVLYLHQLKDRLDMLL 168

Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204
            +E      +          ++ LA
Sbjct: 169 DREGRRALAEACFAFLPDRAELDLA 193


>gi|194366535|ref|YP_002029145.1| ribonuclease D [Stenotrophomonas maltophilia R551-3]
 gi|194349339|gb|ACF52462.1| ribonuclease D [Stenotrophomonas maltophilia R551-3]
          Length = 358

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 66/256 (25%), Gaps = 29/256 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L         + +   +    M + L   L +  +  V H++  +    K      
Sbjct: 36  PQLALVQMAVGQDILLIDPLIPG--MAEALAPWLADESIIKVMHSASEDLVAFKWACG-- 91

Query: 88  IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +       T + A   G+   +   K V E   ++  K E   + + R            
Sbjct: 92  VLPRPLFDTQIGASLAGIGGGMGYQKLVAEITGVALAKGETRSDWMRRPLS--------- 142

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV--DVA 202
                         +Y   DV     +   ++          +L          V  D  
Sbjct: 143 ----------ESQLQYAADDVEHLFAMHDAIDAKLQALGRQQWLHDDGERLLASVANDED 192

Query: 203 LAHTLNQIVDVERTKLDQ-ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
               L+           Q  L  L       +R  ++ ++W+           T      
Sbjct: 193 RWPHLSMRSAQFLDAAAQRRLLRLLRWRDMQARSSDRPRSWILDNELAATLARTPPADAD 252

Query: 262 VLSSNKKLTPQAIQVF 277
            L+   +  P+A +  
Sbjct: 253 ALAKLFEQFPKAPRKL 268


>gi|167516798|ref|XP_001742740.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779364|gb|EDQ92978.1| predicted protein [Monosiga brevicollis MX1]
          Length = 632

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 42/168 (25%), Gaps = 39/168 (23%)

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
            E      +           A +         ++   +  +   V++L + +     Q  
Sbjct: 424 RERGKRVTYAVVYGVGAERLAAQLQLSVPETGQLVAEFLDRFPGVAQLRDRVDAYLHQ-- 481

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
            +G       RR                     R L     G   S       +      
Sbjct: 482 -HGYVETLTMRR---------------------RYLSPPGTGGESSTTQARDSRA----- 514

Query: 593 YGGKLTENIVQAVSRDILAEGMMNA------TKAGYDIVLTVHDEIVC 634
                   ++Q  + DI    M+         +    IVL +HD+IV 
Sbjct: 515 ----AFNFVMQGSAADICKAAMVTLQAHLDKHEVEGGIVLQLHDQIVI 558



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 47/160 (29%), Gaps = 21/160 (13%)

Query: 171 IFKRLEPLSSKEQ----------ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +++RL+    + Q           L  +   +   G  V +         +      L Q
Sbjct: 266 LWRRLKAELEQRQQLTLFERLEVPLTPVLVRMQVLGVGVALPQLVATQAALQHCLQSLTQ 325

Query: 221 ELESLTYGLVSSSRCLEKLKTWLF--LETGLHLE------DLTETTCQRVLSSNKKLTPQ 272
           E   L      +    +++   LF  L+ G ++           +T +  L   +   P 
Sbjct: 326 EAAILAGQS-FNLDSAQQVANILFTHLQLGRNVPMLPMTASGKPSTGEETLRKLQSKHPL 384

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLG 312
              +   R    R     +  +   ++ +G +       G
Sbjct: 385 PGLILRYRQ-LKRCLSGYIEQVCPLVH-EGTVHPRWHQPG 422



 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 40/384 (10%), Positives = 87/384 (22%), Gaps = 34/384 (8%)

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
                        D +  +H             D+     ++            L     
Sbjct: 133 NLLISPPEVVEGADPSPDHHTLPVLALQSTAASDLAPAVVVWHSTPTKQFMAIPLAQWLA 192

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC--LEKLKTWLFLETG 248
                    D         +         +++  L              K+     L   
Sbjct: 193 VPPQPVLVFDFENLIDQLPLATTALLTNVKQVYDL-AVAAFLLDSAVPPKVDQVCQLYLP 251

Query: 249 LHLEDLTETTCQRVLSS-NKKLTPQAIQV-FNNRMR------ASRSAVLKL-NTLVEAMN 299
                 +  +   +L    K    Q  Q+    R+         R  VL +   L + + 
Sbjct: 252 DRAPSASWPSLLNMLWRRLKAELEQRQQLTLFERLEVPLTPVLVRMQVLGVGVALPQLVA 311

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +   L+  LQ L        +G  F   +  + +       Q+  ++P    +       
Sbjct: 312 TQAALQHCLQSLTQEAAI-LAGQSFNLDSAQQVANILFTHLQLGRNVPMLPMTASGKPST 370

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
             + +R                +      L     +  +  +    +   +         
Sbjct: 371 GEETLRKL-------------QSKHPLPGLILRYRQLKRCLSGYIEQVCPLVHEGTVH-- 415

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
            P       R  GK +  A+ Y  GA+     A+   L++     LV      + +    
Sbjct: 416 -PRWHQPGLRERGKRVTYAVVYGVGAERL---AAQLQLSVPETGQLV--AEFLDRFPGVA 469

Query: 480 NFCRWMQENHPEHAIEDLFIGTAC 503
                +     +H   +       
Sbjct: 470 QLRDRVDAYLHQHGYVETLTMRRR 493


>gi|15895183|ref|NP_348532.1| ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|15024889|gb|AAK79872.1|AE007698_6 Ribonuclease D [Clostridium acetobutylicum ATCC 824]
 gi|325509325|gb|ADZ20961.1| Ribonuclease D [Clostridium acetobutylicum EA 2018]
          Length = 205

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 56/179 (31%), Gaps = 31/179 (17%)

Query: 2   ATLFIDFETRSPIDLT-KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
             + ID ET     L  K  + +      + L  +   +               + L   
Sbjct: 24  KYIAIDTETTGLDPLKDKLCLIQICAKEKIFLIKYNNSNQ--------------KNLIGI 69

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L+ + +  + H++ F+   L     +   I+  +CT + A+                   
Sbjct: 70  LQCSKIIKIFHHANFDLRFLMKNLKI-YNINNVVCTKIAAKLLN--------------GI 114

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           +     K+L+ ++      + L   N        +   +Y   DV    ++++ L+   
Sbjct: 115 EIENSLKKLLRKYLNINIDKKLQKSNWS-AENLTKEQIQYATYDVIYLEKLWRALKAEL 172


>gi|327197776|ref|YP_004301474.1| gp141 [Brochothrix phage A9]
 gi|299810376|gb|ADJ53175.1| gp141 [Brochothrix phage A9]
          Length = 334

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 99/369 (26%), Gaps = 113/369 (30%)

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
             QNLPR        D           +                 A     LV  D +  
Sbjct: 2   NLQNLPRSISDPTRFDYAFPIKDYFGPN----------------KARNHDTLVFTDYSAQ 45

Query: 385 EARVLAWMAGEQWKLKAF-ETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           EAR+   +AG++  + AF +   D++  T +  F V   +VTKD R   K +   L    
Sbjct: 46  EARLAGVLAGDEQMINAFLDPSRDVHTETASLVFKVPVEEVTKDLRTRAKAVTFGLM--- 102

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                                                      E+    A ++       
Sbjct: 103 -----------------------------------------YGEDPNSFAGKNNMPIEES 121

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           E++ + +     ++ EL +    +                             +  + +P
Sbjct: 122 EQLFEDYYAGKPKIKELIDIAQSSA--------------------------TRDGYIDVP 155

Query: 564 -SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----- 617
            SG      DV +          +         +    +VQ  S  +  + ++       
Sbjct: 156 GSGFRRNLEDVWSADFKTKNGALR---------QALNTMVQGGSAYLTQKALITINQYFR 206

Query: 618 -TKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL-MTSNPSWAKGL---------PLKAE 666
                  I++TVHD IVC T        + +  + M +       +         P+ A+
Sbjct: 207 AYDIDAYIMVTVHDSIVCSTKRELVPTVATIMQVAMENVEVDYLNIEHNGNPIRFPMVAD 266

Query: 667 GYESKRYRK 675
                 Y K
Sbjct: 267 VGVGVTYNK 275


>gi|326403860|ref|YP_004283942.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
 gi|325050722|dbj|BAJ81060.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301]
          Length = 218

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 61/211 (28%), Gaps = 40/211 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVHDPVMPQ--VL 57
            + +D ET         G+    +   + L      D+    V++              L
Sbjct: 28  VVAVDTET--------MGLDPRRD--RLCLVQLSAGDNSAHLVQIVPPALGGRGADCPNL 77

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGE 114
           K  LE+  VT + H + F+  +L     +       ICT + ++          LK +  
Sbjct: 78  KRLLEHPGVTKLFHFARFDLAMLYHALGVTTAP--VICTKIASKLVRTYTDRHGLKDLCR 135

Query: 115 AL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
            L  +   K ++  +  +     E                      Y   DV     I+ 
Sbjct: 136 DLVGIEISKQQQTSDWGSAELSPEQ-------------------CAYAASDVLHLHAIWA 176

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
           RLE L  +E      D           + L 
Sbjct: 177 RLEALLVREGRRELADACYRFLPARAKLDLL 207


>gi|237800267|ref|ZP_04588728.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023124|gb|EGI03181.1| ribonuclease D [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 377

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 81/295 (27%), Gaps = 46/295 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--- 60
           + +D E           +  +     ++      D     L D    P++    +     
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGKSAWLID----PLLINDWRPLSAL 71

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALK 117
           LEN DV  V H    +  VL       +P+     T + A    L  ++     V E L 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLD 129

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K E   + + R                           Y   D     E+F  L P
Sbjct: 130 IDLPKGETRSDWLQRPLS-------------------ETQISYAAEDAVHLAELFAILRP 170

Query: 178 LSSKEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             S ++  W LD            VD    +   ++           L  L       +R
Sbjct: 171 RLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREAR 230

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAV 288
                +  +  E  L     T+      L+  + + P+         +   ++A 
Sbjct: 231 ARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|84684593|ref|ZP_01012494.1| exonuclease, putative [Maritimibacter alkaliphilus HTCC2654]
 gi|84667572|gb|EAQ14041.1| exonuclease, putative [Rhodobacterales bacterium HTCC2654]
          Length = 203

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 47/177 (26%), Gaps = 27/177 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    +            L   L 
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVVQMSGGDGHAHMVQVERGQTEAPNLTAMLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           + +V  + H   F+   L   F +        CT + ++            +   L   K
Sbjct: 69  DPNVLKIFHFGRFDIAALLNAFGVVTAP--VYCTKIASKLIR------TYTDRHGL---K 117

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               + L     K +       R     +        Y   DV     + ++L+   
Sbjct: 118 TLLEEILRIDISKYQQQTDWGARELTEAQLD------YAASDVLYLHRLREKLDGRL 168


>gi|163757673|ref|ZP_02164762.1| putative ribonuclease [Hoeflea phototrophica DFL-43]
 gi|162285175|gb|EDQ35457.1| putative ribonuclease [Hoeflea phototrophica DFL-43]
          Length = 207

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 47/203 (23%), Gaps = 33/203 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET   +               + +      D   ++            L   L +
Sbjct: 23  IAVDTETLGLVP----------RRDRLCVVQLSPGDGSADVIQIAKGQKRAPNLVALLTD 72

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H   F+  VL   F +        CT + +R          LK V   L    
Sbjct: 73  RKRRKLFHYGRFDIAVLYNAFGVTTEP--VFCTKIASRLTRTYTDRHGLKDVTREL---- 126

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +             +       EY   DV     +  +L     
Sbjct: 127 --------LEVDLSKQQQSSDWAAETLTPAQ------LEYAASDVLHLHALTAKLTERLQ 172

Query: 181 KEQELWYLDQTINDRGYCVDVAL 203
           ++    +             + L
Sbjct: 173 RDDREAHAKACFEFLPTRAKLDL 195


>gi|56417079|ref|YP_154153.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|222475445|ref|YP_002563862.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
 gi|254995250|ref|ZP_05277440.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
 gi|255003431|ref|ZP_05278395.1| ribonuclease D (rnd) [Anaplasma marginale str. Puerto Rico]
 gi|255004550|ref|ZP_05279351.1| ribonuclease D (rnd) [Anaplasma marginale str. Virginia]
 gi|56388311|gb|AAV86898.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|222419583|gb|ACM49606.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
          Length = 204

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 17/167 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D ET          +        V L      D    L     D   P  L+  +
Sbjct: 18  NVVAVDTET----------MGLVCRRDRVCLVQLSSGDGDAHLVKFSGDYSAP-NLRRIV 66

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALK 117
            N ++  + H + F+   ++ CF +        CT + +R          LK +  E L 
Sbjct: 67  SNPEIMKIFHFARFDVAAIRHCFGMW--AVPCYCTKIASRLVRTYTNHHGLKDLCYELLG 124

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           +   K ++  +        E            H    +L     + D
Sbjct: 125 VKINKAQQSSDWGREVLTSEQLSYAAADVIYLHDIKKKLDMMLERED 171


>gi|332716830|ref|YP_004444296.1| Ribonuclease D [Agrobacterium sp. H13-3]
 gi|325063515|gb|ADY67205.1| Ribonuclease D [Agrobacterium sp. H13-3]
          Length = 208

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 49/202 (24%), Gaps = 29/202 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   +               + +      D   ++            L   L +
Sbjct: 24  IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLTHMLAD 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H   F+  VL   F +        CT + +R                L   K 
Sbjct: 74  PARQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRL---TRTYTD---RHGL---KD 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLF-GEYCKGDVTVTREIFKRLEPLSSKE 182
              + L       E       ++     E       EY   DV     +  +L     ++
Sbjct: 123 NLKEML-------EVDISKAQQSSDWAAEKLSPAQLEYAASDVLHLHALRDKLTHRLVRD 175

Query: 183 QELWYLDQTINDRGYCVDVALA 204
             L + D           + L 
Sbjct: 176 GRLDHADACFAFLPTRAKLDLL 197


>gi|47934834|gb|AAT39855.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFWGVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|330894750|gb|EGH27411.1| ribonuclease D [Pseudomonas syringae pv. mori str. 301020]
          Length = 377

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 81/295 (27%), Gaps = 44/295 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD--CVHDPVMPQVLKEAL 61
           + +D E           +  +     ++      D     L D   ++D    Q L   L
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQNAWLIDPLLIND---WQPLSALL 72

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKL 118
           EN DV  V H    +  VL       +P+     T + A    L  ++     V E L +
Sbjct: 73  ENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLNI 130

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K E   + + R                           Y   D     E+F  L P 
Sbjct: 131 DLPKGETRSDWLQRPLS-------------------ETQISYAAEDAVHLAELFAILRPR 171

Query: 179 SSKEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            S ++  W LD            VD    +   ++           L  L       +R 
Sbjct: 172 LSDDKYAWLLDDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARA 231

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAVL 289
               +  +  E  L     T+      L   + + P+         +   ++A  
Sbjct: 232 RNLPRNRIVREHSLWPLAKTQPDNLAALGRIEDMHPRTVRHDGEFLLELIKTAGT 286


>gi|329888476|ref|ZP_08267074.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328847032|gb|EGF96594.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 204

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 57/211 (27%), Gaps = 37/211 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+ ++  D   +       D    +            LK  L 
Sbjct: 19  QVAIDSET--------MGL-RFRRDPLCV-VQLSSGDGNAHVVRLNRPAYDCPNLKRLLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           +  V  + H   F+  +      ++       CT + ++          LK V + L  +
Sbjct: 69  DPKVLKIFHFGRFDIGMFDLHLGVETRP--VYCTKIASKLARTYTDRHGLKDVAKELAGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                       E  +   +Y   DV     I  RL  +
Sbjct: 127 DMSKAQQSSDWG-------------------AAELSQAQLDYAASDVLYLHAIMNRLNEM 167

Query: 179 S--SKEQELWYLDQTINDRGYCVDVALAHTL 207
                  EL             +D+A    +
Sbjct: 168 LVREGRMELAQACFDFLPVRSRLDLAGWDEI 198


>gi|312195229|ref|YP_004015290.1| DNA-directed DNA polymerase [Frankia sp. EuI1c]
 gi|311226565|gb|ADP79420.1| DNA-directed DNA polymerase [Frankia sp. EuI1c]
          Length = 586

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 62/207 (29%), Gaps = 49/207 (23%)

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLV-EAMNSDGRLRGTLQFLGAS 314
             T    L +     P   ++     +A R A    +  +   + +DGRLRG       +
Sbjct: 278 PDTRSGRLRALSAAHPVIDELL-AWRKAERIATTYGHRWLATHVGADGRLRGRWHGSDGA 336

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
                +       NLP                                 +R  V+A  G 
Sbjct: 337 AGRMTA--DAGLHNLP-------------------------------AEMRVAVVAEPGH 363

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + V ADL  IE RVLA ++G+    +A                    A      R   KV
Sbjct: 364 RFVRADLGQIEPRVLAVVSGDPELTRATRQ----------DDLYAPVAARLGVDRPTAKV 413

Query: 435 MELALGYQGGAK----AFQKMASTTGL 457
             LA  Y         A ++M  T G+
Sbjct: 414 AVLAAMYGQTTGAAGQALRQMRETYGV 440



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 15/158 (9%)

Query: 526 QAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS--GRSLVYRDVGNNRSYLNTT 583
           QA  Q  E     +A                     L +  GR +  R +  +       
Sbjct: 429 QALRQMRETYGVALAYLDAADAAGRSAALGAAPATPLRTFGGRRIPLRALPADADGDIGR 488

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIVCETP-D 638
                    YG      +VQ  + ++     +   +A    G  IVL +HDE++ + P  
Sbjct: 489 A-----AAAYGRFARNAVVQGAAAELFKAWAVTVRQALIPLGGTIVLCLHDELLLQVPVQ 543

Query: 639 TDEFNASMLYHLM-TSNPSWAKG--LPLKAEGYESKRY 673
           T E   +  +  +  +   WA G  +   A+     R+
Sbjct: 544 TAEAAVAATHRALDATAAHWAAGSAVRFVADIAVISRW 581


>gi|254502882|ref|ZP_05115033.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
 gi|222438953|gb|EEE45632.1| DNA polymerase III, epsilon subunit [Labrenzia alexandrii DFL-11]
          Length = 239

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 54/194 (27%), Gaps = 33/194 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--- 57
           M  +  D ET         G  +  E   V L                    MP+     
Sbjct: 1   MREISFDTETTGLNP---RGGDRLVEIGGVELINH-VPTGNAYHVYINPQRDMPEGAFKV 56

Query: 58  ----------KEALE---NTDVTIVA------HNSYFERTV----LKACFNLDIPIHRWI 94
                     K   E   +  +  V       HN+ F+       L+ C    I   + I
Sbjct: 57  HGLSEEFLSDKPLFEQVADEFLEFVGDGTLVIHNAAFDMGFINMELERCGRRTISNTQVI 116

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDRNKPNHR 151
            TL +AR        +L A+     + + K ++ G  L A        E +  + +    
Sbjct: 117 DTLEIARRKHPSGPNSLDALCSRYGIDNSKRVKHGALLDAEILAEVYLEMIGGKQRALIL 176

Query: 152 EAWRLFGEYCKGDV 165
           +     G    GD 
Sbjct: 177 DPDEEDGLIGSGDA 190


>gi|148243178|ref|YP_001228335.1| ribonuclease [Synechococcus sp. RCC307]
 gi|147851488|emb|CAK28982.1| Ribonuclease [Synechococcus sp. RCC307]
          Length = 217

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 56/196 (28%), Gaps = 35/196 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E          G+    +   + L     D   V             +LKE +
Sbjct: 31  KALAVDTE--------AMGLIHGRD--RLCLVQICDDQDRVCCIRIARGQSEAPLLKELM 80

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKA-VGEALK 117
           E T +  V H + F+   +     L I ++   CT V +R          L A V E + 
Sbjct: 81  EATGIEKVFHYARFDVAAMA--SGLGIAVNPIFCTKVASRLARTYSPRHGLAAVVSELVG 138

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K  +  +                       E       Y   DV        RLE 
Sbjct: 139 VDLDKQAQSSDWGR------------------VEELSEQQLAYAANDVRYLLPARDRLEQ 180

Query: 178 LSSKEQELWYLDQTIN 193
           +    +E W L Q   
Sbjct: 181 ML-VREERWSLAQRCF 195


>gi|238695631|ref|YP_002922658.1| P44 [Xanthomonas phage phiL7]
 gi|190343998|gb|ACE75784.1| P44 [Xanthomonas phage phiL7]
          Length = 330

 Score = 67.1 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 71/238 (29%), Gaps = 20/238 (8%)

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
           G    +  A       +         S         +F R       + A          
Sbjct: 51  GRAEGRDYAYILKAAQDENHPEHAKWSELRSNAKVFSFQRAYGAGVAKIAATTGMSVEDV 110

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
           E + +A  +++  +     ++    ++     +   +R  +   +  M+        + P
Sbjct: 111 EALIEAEAERYPELISYIEDITDYIKE----NRVPTSRYCQHPQIPGMQCQLGRSHYITP 166

Query: 564 SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG-KLTENIVQAVSRDILAEGMMNATKAGY 622
            G+   Y +  +          +     ++   ++   +VQ    +     M  A +A Y
Sbjct: 167 DGKMYSYSESPSPEFVAKRPASRGGTPQSFSPTEIKNYVVQGTGGEWTKAAMYLAVRAFY 226

Query: 623 D---------IVLTVHDEIVCET-PDTDEFNASMLYHLMTSNPSWAK-----GLPLKA 665
                     +V TVHD I  +   +T    A+ML   M    ++ +      LPL  
Sbjct: 227 RRGNFGGMALLVNTVHDAIYLDASAETCHDAAAMLEAAMFEASTYMEFWFKWKLPLGV 284


>gi|9634020|ref|NP_052094.1| 5B protein [Yersinia phage phiYeO3-12]
 gi|6599011|emb|CAB63615.1| 5B protein [Yersinia phage phiYeO3-12]
          Length = 384

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/471 (10%), Positives = 97/471 (20%), Gaps = 132/471 (28%)

Query: 231 SSSRCLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQ---AIQVFNNRMRAS 284
                 + ++  L     +  +            VL   +   P+    I +    +   
Sbjct: 14  FKPSSRDHIQKKLQEAGWVPEKFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMIQ 73

Query: 285 R---SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP-RPSRSHEELD 340
           +    A       +  +  DG++ G +   GA  TGR +        +P   S   E+  
Sbjct: 74  KRIGQAAEGDKAWLRYVQDDGKIHGAVNPNGA-VTGRATHSFPNLAQVPGVRSPYGEQCR 132

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                          P                       D +G+E R LA         +
Sbjct: 133 SAFGAEHHLDGITGKP-----------------WVQAGIDASGLELRCLAHFMARFDNGE 175

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
                 +                     R   K       Y  G +              
Sbjct: 176 YANEILNGD------IHTKNQNAAELPTRDNAKTFIYGFLYGAGDEKI------------ 217

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                                      + +KK + +    ++ L
Sbjct: 218 --------------------------------GQIVGAGKERGKELKKKFLENTPAIAAL 245

Query: 521 WNELHQAFEQ--TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRS 578
              + Q+         G+  +  KRR               +    GR +  R       
Sbjct: 246 REAIQQSLVNSSAWIGGEQKVQWKRR--------------WIKGLDGRKVHVRSPHA--- 288

Query: 579 YLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG-------------YDIV 625
                                 ++Q+    I    ++   +                 + 
Sbjct: 289 ------------------ALNTLLQSAGALICKLWIIKTEEMLIEKGLKHGWDGDFAQM- 329

Query: 626 LTVHDEIVCETP--DTDEFNASMLYHLMTSNPS-WAKGLPLKAEGYESKRY 673
             +HDE+       +  +    +    M      W     L  EG     +
Sbjct: 330 GWIHDEVQIACRTEEVAKVVVEVAQEAMRWVGEHWNFRCRLDTEGKIGPNW 380


>gi|221640647|ref|YP_002526909.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
 gi|221161428|gb|ACM02408.1| 3'-5' exonuclease [Rhodobacter sphaeroides KD131]
          Length = 204

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 47/181 (25%), Gaps = 35/181 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+    +   + +      D    L            L+  L 
Sbjct: 19  VVAIDTET--------MGLDPRRD--RLCVVQLSAGDGDAHLVQIERGQTSAPNLERLLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           +  V  + H   F+   LK  F   +      CT + ++          LK +   L  +
Sbjct: 69  DPQVLKLFHFGRFDIAALKRAFG--VRTEPVWCTKIASKMVRTFTDRHGLKYLLLELVGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                       E      +Y   DV     +   LE  
Sbjct: 127 DVSKQQQTSDWG-------------------AAELTDAQKDYAASDVLHLHRLKDELEAR 167

Query: 179 S 179
            
Sbjct: 168 L 168


>gi|77464733|ref|YP_354237.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|77389151|gb|ABA80336.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
          Length = 204

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 47/181 (25%), Gaps = 35/181 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+    +   + +      D    L            L+  L 
Sbjct: 19  VVAIDTET--------MGLDPRRD--RLCVVQLSAGDGDAHLVQIERGQTSAPNLERLLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           +  V  + H   F+   LK  F   +      CT + ++          LK +   L  +
Sbjct: 69  DPQVLKLFHFGRFDIAALKRAFG--VRTEPVWCTKIASKMVRTFTDRHGLKYLLLELVGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                       E      +Y   DV     +   LE  
Sbjct: 127 DVSKQQQTSDWG-------------------AAELTDAQKDYAASDVLHLHRLKDELEAR 167

Query: 179 S 179
            
Sbjct: 168 L 168


>gi|331019018|gb|EGH99074.1| ribonuclease D [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 377

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 75/275 (27%), Gaps = 41/275 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  +     ++      D     L D  + +   P  L   LE
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWAP--LSALLE 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKLS 119
           N  V  V H    +  VL       +P+     T + A    L  ++     V E L + 
Sbjct: 74  NPAVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLNID 131

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K E   + + R                           Y   D     E+F  L P  
Sbjct: 132 LPKGETRSDWLQRPLS-------------------DTQISYAAEDAVHLAELFAILRPRL 172

Query: 180 SKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           S ++  W LD            VD    +   ++           L  L       +R  
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSCAQLAVLRELCAWREVQARAR 232

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
              +  +  E  L     T+      L+  + + P
Sbjct: 233 NLPRNRIIREHSLWPLAKTQPDNLGALARIEDMHP 267


>gi|255712831|ref|XP_002552698.1| KLTH0C11066p [Lachancea thermotolerans]
 gi|238934077|emb|CAR22260.1| KLTH0C11066p [Lachancea thermotolerans]
          Length = 735

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 51/203 (25%), Gaps = 42/203 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             + ID E     T   I                 L      +    L D +       +
Sbjct: 235 NEIAIDLEHHDYRTYYGI---------------TCLMQISTREKD-WLIDTIALRDDLWI 278

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115
           L E   +  +T V H ++ +   L+    L I       T   +R  G P  +L  + E 
Sbjct: 279 LNEVFTDPKITKVLHGAFMDIIWLQRDLGLYI--VSLFDTYHASRLLGSPKHSLAYLLER 336

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                              K         R  P      +    Y + D      I+  +
Sbjct: 337 YAHFK------------TSKKYQLSDWRVRPLP------KALKAYARADTHFLLNIYDNM 378

Query: 176 EPLSSKEQELWYLDQTINDRGYC 198
                ++ +L  +     +    
Sbjct: 379 RNSLIEQNKLSQVLHDSRNVAKR 401


>gi|47934770|gb|AAT39823.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 67/223 (30%), Gaps = 45/223 (20%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVLPPIVEERWSEKTGKRLKNKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
             +++   L    G+  +  TE     V                      +    ++++ 
Sbjct: 61  SRKQIAERLVG-VGVKFKQKTEKGAVIVNEKVLGGIDIPEAKTIYEYLMLQKRAAQIDSW 119

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           +     DGR+ G +   GA  TGR +        +P  S                     
Sbjct: 120 LTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP------------------- 158

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                     RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 -----YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|28871074|ref|NP_793693.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28854324|gb|AAO57388.1| ribonuclease D [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 377

 Score = 67.1 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 75/275 (27%), Gaps = 41/275 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  +     ++      D     L D  + +   P  L   LE
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWAP--LSALLE 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKLS 119
           N  V  V H    +  VL       +P+     T + A    L  ++     V E L + 
Sbjct: 74  NPAVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLNID 131

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K E   + + R                           Y   D     E+F  L P  
Sbjct: 132 LPKGETRSDWLQRPLS-------------------DTQISYAAEDAVHLAELFAILRPRL 172

Query: 180 SKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           S ++  W LD            VD    +   ++           L  L       +R  
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREVQARAR 232

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
              +  +  E  L     T+      L+  + + P
Sbjct: 233 NLPRNRIIREHSLWPLAKTQPDNLGALARIEDMHP 267


>gi|213969693|ref|ZP_03397828.1| ribonuclease D [Pseudomonas syringae pv. tomato T1]
 gi|301383544|ref|ZP_07231962.1| ribonuclease D [Pseudomonas syringae pv. tomato Max13]
 gi|302062110|ref|ZP_07253651.1| ribonuclease D [Pseudomonas syringae pv. tomato K40]
 gi|302130100|ref|ZP_07256090.1| ribonuclease D [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213925501|gb|EEB59061.1| ribonuclease D [Pseudomonas syringae pv. tomato T1]
          Length = 377

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 75/275 (27%), Gaps = 41/275 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  +     ++      D     L D  + +   P  L   LE
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIDPLLINDWAP--LSALLE 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKLS 119
           N  V  V H    +  VL       +P+     T + A    L  ++     V E L + 
Sbjct: 74  NPAVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLNID 131

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K E   + + R                           Y   D     E+F  L P  
Sbjct: 132 LPKGETRSDWLQRPLS-------------------DTQISYAAEDAVHLAELFAILRPRL 172

Query: 180 SKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           S ++  W LD            VD    +   ++           L  L       +R  
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREVQARAR 232

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
              +  +  E  L     T+      L+  + + P
Sbjct: 233 NLPRNRIIREHSLWPLAKTQPDNLGALARIEDMHP 267


>gi|115948726|ref|XP_001193541.1| PREDICTED: similar to exosome component 10, partial
           [Strongylocentrotus purpuratus]
          Length = 776

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 51/180 (28%), Gaps = 34/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y    C++  +         + D +      Q+L +A 
Sbjct: 138 KEIAVDLE--------HHSYRSYLGFTCLMQISTA---EHDYVVDTLELRSELQMLNDAF 186

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKA-VGEALKLS 119
            +  +  V H +  +   L+      + +     T   +RS G    +L + +    ++ 
Sbjct: 187 TDPKIVKVFHGANMDFDWLQRDLG--LYVVNMFDTHQASRSLGFPHHSLASLLSRYCQVE 244

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R  P           Y + D      I+  ++   
Sbjct: 245 ADKQYQLADW-------------RIRPLP------EEMLHYAREDTHYLLYIYHTMKNEL 285


>gi|126463573|ref|YP_001044687.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126105237|gb|ABN77915.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 204

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 47/181 (25%), Gaps = 35/181 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+    +   + +      D    L            L+  L 
Sbjct: 19  VVAIDTET--------MGLDPRRD--RLCVVQLSAGDGDAHLVQIERGQTSAPNLERLLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           +  V  + H   F+   LK  F   +      CT + ++          LK +   L  +
Sbjct: 69  DPQVLKLFHFGRFDIAALKRAFG--VRTEPVWCTKIASKMVRTFTDRHGLKYLLLELVGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                       E      +Y   DV     +   LE  
Sbjct: 127 DVSKQQQTSDWG-------------------AAELTDAQKDYAASDVLHLHRLKDELEAR 167

Query: 179 S 179
            
Sbjct: 168 L 168


>gi|146337290|ref|YP_001202338.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           ORS278]
 gi|146190096|emb|CAL74088.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp.
           ORS278]
          Length = 204

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 51/179 (28%), Gaps = 33/179 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+  + +   + +      D   ++            LK  L N
Sbjct: 20  VAIDTET--------MGLNPHRD--RLCVVQLSPGDGSADVVQIPKGHTDAPNLKTLLGN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
           T +T + H + F+   L   F   +      CT + +R          LK +   L    
Sbjct: 70  TAITKIFHFARFDVATLFHTFG--VMPQPVYCTKIASRLARTYTDRHGLKDLVREL---- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                   L     K +        +             Y   DV     + ++L+ + 
Sbjct: 124 --------LNIDLSKQQQSSDWGADSLS------EPQLAYAASDVLHLHALREKLDVML 168


>gi|327198220|ref|YP_004306796.1| putative DNA polymerase [Pseudomonas phage KPP10]
 gi|297591746|dbj|BAJ09166.1| putative DNA polymerase [Pseudomonas phage KPP10]
          Length = 885

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 84/300 (28%), Gaps = 41/300 (13%)

Query: 2   ATLFIDFETRSPIDLTKC----GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
             +  D E    I            +  ED  +   A   D    E++    D VM    
Sbjct: 7   RRVVFDIEATGLIGEGTVDYTASPWRLKEDFKLHC-AVARDIDTDEVFKWGPDEVM--DF 63

Query: 58  KEALENTDVTIVAHNS-YFERTVLKACFN-------------LDIPIHRWICTLVLARSN 103
            + L      ++ HN   ++   LK                 ++    + + TLV++++ 
Sbjct: 64  AKWLGEECSVVIGHNIINYDLLALKLTCGLEYTIGWGETKDTINGNPVKIVDTLVISKAL 123

Query: 104 G----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    + A G+ L L+     + +           +       K  H E      E
Sbjct: 124 NPDRRPGHGIGAWGDKLGLAK---IDWRAKAVELGLITENAPRGAEFKTYHPE----MLE 176

Query: 160 YCKGDVTVTREIFK-RLEPLSSKEQEL--------WYLDQTINDRGYCVDVALAHTLNQI 210
           Y   DV V   ++K  +    +              ++    + RG+  D  LA    + 
Sbjct: 177 YNVRDVDVNLLVYKALMAEWGAWNWAPAVQTESYVAWVVTRQSHRGFFFDERLAQANVRE 236

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
           +D    +    +E +      +     K       E  +       +  ++ L       
Sbjct: 237 LDQLMEECRAIVEPILPPKKPTKTEAAKYCFPKTQEKKIKGGLGLSSNMEKFLEKMGGKH 296


>gi|254431401|ref|ZP_05045104.1| RNAse D protein [Cyanobium sp. PCC 7001]
 gi|197625854|gb|EDY38413.1| RNAse D protein [Cyanobium sp. PCC 7001]
          Length = 224

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 57/196 (29%), Gaps = 35/196 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E          G+    +   + L     D   V              L+  +
Sbjct: 34  RALAVDTE--------AMGLIHGRD--RLCLVQICDDADNVCCIRLRRGQSSAPHLQALM 83

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV---LARSNGLPSALKAVGEAL-K 117
           EN  +  V H + F+   L     + +      CT +   LAR+      LK V + L  
Sbjct: 84  ENAAIEKVFHFARFDVAALAENLGIAVHP--IFCTKIGSRLARTYSPRHGLKDVVQELVG 141

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K  +  +                       +       Y  GDV    +   RLE 
Sbjct: 142 VELDKRAQSSDW------------------GEVDDLSEAQLAYAAGDVRYLLQARDRLER 183

Query: 178 LSSKEQELWYLDQTIN 193
           +  + +E W L Q   
Sbjct: 184 ML-RREERWELAQRCF 198


>gi|330964859|gb|EGH65119.1| ribonuclease D [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 377

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 75/277 (27%), Gaps = 45/277 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--- 60
           + +D E           +  +     ++      D     L D    P++          
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLID----PLLINNWAPLSAL 71

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALK 117
           LEN DV  V H    +  VL       +P+     T + A    L  ++     V E L 
Sbjct: 72  LENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLN 129

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K E   + + R                           Y   D     E+F  L P
Sbjct: 130 IDLPKGETRSDWLQRPLS-------------------DTQISYAAEDAVHLAELFAILRP 170

Query: 178 LSSKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             S ++  W LD            VD    +   ++           L  L       +R
Sbjct: 171 RLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREVQAR 230

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
                +  +  E  L     T+      L+  + + P
Sbjct: 231 ARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHP 267


>gi|145595499|ref|YP_001159796.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
 gi|145304836|gb|ABP55418.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
          Length = 592

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/416 (13%), Positives = 94/416 (22%), Gaps = 148/416 (35%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F   G+ + +      + V        P A  V        R          EA   DGR
Sbjct: 263 FARAGVEVPNTRSWVLRGV------DHPAAPLVLEY-KELYRIWTAHGWAWQEAWVRDGR 315

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R      G   +GRW+        +P+                                
Sbjct: 316 FRPEYVPAGV-VSGRWATRGGGALQIPK-------------------------------V 343

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G   VVAD   +E R+LA ++G+     A               +      
Sbjct: 344 IRRAVVADPGWTFVVADAGQLEPRILAAVSGDTRLAAAARA---------GDLYAALADD 394

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                RA  KV  L   Y                     +           +  A  +  
Sbjct: 395 AFGGDRARAKVALLGAMYGQTGG----------------SAAPALEVLRRNYPAAFGYVE 438

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAW--RQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
               +                 + ++W  R            + +  E T+  G      
Sbjct: 439 TAARSG------------EAGELVRSWLGRTCPPG------SVDRVGEDTVPAGGE---- 476

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                                PS R+                  + TR           +
Sbjct: 477 -------------------EGPSARAR--------------ARGRFTR---------NFV 494

Query: 602 VQAVSRDILA--EGMMN----------------ATKAGYDIVLTVHDEIVCETPDT 639
           +QA + +  A     +                    +  ++V   HDE++      
Sbjct: 495 IQATAAEWAATLLATLRGELAGSDAELVGSDVGLAGSDAELVFFQHDEVIVHCRTE 550


>gi|99035969|ref|ZP_01315013.1| hypothetical protein Wendoof_01000149 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 529

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 59/217 (27%), Gaps = 30/217 (13%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            +  + +  +   +         ++   L +  V  + HN    R +      ++  +  
Sbjct: 327 LSLSYSESNIFYIEQDSIQDALIIINLTLLSNGVLKIIHNIKEIRKIF---PAIEKMLDS 383

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
               ++++       +L        + +       E    F             +   +E
Sbjct: 384 VDDLMIMSY------SLDTGKHDHSIPNIVAHNLSENAEIFSAKTLIAIHEKLKQRLFQE 437

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                             I++R +           +   +   G  +++     L+    
Sbjct: 438 KL--------------LTIYERFDKPL------MKVIFDMEKNGILLNIQKLQELSDKFQ 477

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
                L+ E+ +L      +    ++L   LF + GL
Sbjct: 478 QVIAVLEDEIYNLAG-ERFNIASPKQLSDVLFNKMGL 513


>gi|154244026|ref|YP_001414984.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
 gi|154158111|gb|ABS65327.1| 3'-5' exonuclease [Xanthobacter autotrophicus Py2]
          Length = 206

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 29/184 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ--VLKEA 60
            + ID ET         G+  + +   + L      D   +L              L   
Sbjct: 19  VVAIDTET--------MGLNPFRD--RLCLVQLSNGDGSADLVQIPQGADATTAPNLTRL 68

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  +T + H   F+  VL+  F   +      CT + +R            +   L  
Sbjct: 69  LADPAITKLFHFGRFDIAVLQHTF--HVMPQPVWCTKIASRLVR------TYTDRHGL-- 118

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K    + +     K +       ++  + + A      Y   DV     +  +LE + +
Sbjct: 119 -KDLLRETINVDISKQQQSSDWGAKDLSDAQLA------YAASDVLHLHAVKAKLEEMLA 171

Query: 181 KEQE 184
           +E  
Sbjct: 172 RENR 175


>gi|126732863|ref|ZP_01748654.1| 3'-5' exonuclease [Sagittula stellata E-37]
 gi|126706639|gb|EBA05713.1| 3'-5' exonuclease [Sagittula stellata E-37]
          Length = 204

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 46/181 (25%), Gaps = 33/181 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L            L   L 
Sbjct: 19  VVAIDCET--------MGLHPHRD--RLCVVQLSAGDGNAHLVQVARGQTEAPNLSRLLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           + DV  + H   F+   +   F          CT + +R          LK + + L   
Sbjct: 69  DPDVLKLFHYGRFDIAAMYNAFG--ALAAPVYCTKIASRLVRTYTDRHGLKNLTQEL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +           + +       +Y   DV     +   L  + 
Sbjct: 124 ---------LGVDISKQQQSSDWGAETLTDAQ------KDYAASDVLHLHRLRTALNAML 168

Query: 180 S 180
            
Sbjct: 169 E 169


>gi|116075800|ref|ZP_01473059.1| putative ribonuclease D [Synechococcus sp. RS9916]
 gi|116067115|gb|EAU72870.1| putative ribonuclease D [Synechococcus sp. RS9916]
          Length = 214

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 51/210 (24%), Gaps = 38/210 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E          G+    +   + L      D  V              L+  +
Sbjct: 30  KALAVDTE--------AMGLIHGRD--RLCLVQICDPDDHVACVRIGLGQTEAPRLEALM 79

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-K 117
           E+  V  V H + F+   L     L I ++   CT V +R          LK +   L  
Sbjct: 80  ESKAVEKVFHFARFDVAALA--SGLGIAVNPIFCTKVASRLARTYTPRHGLKDLVMELVG 137

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K  +  +                       E       Y   D      +  R   
Sbjct: 138 VELDKQAQSSDWGR------------------VDELTEAQLAYAANDAR--YLLPARDRL 177

Query: 178 LSSKEQELWYLDQTINDRGYCV--DVALAH 205
                +E  +           V  D+    
Sbjct: 178 ELMLRREGRWELAERCFPCIPVIADLDRLR 207


>gi|89067364|ref|ZP_01154877.1| exonuclease, putative [Oceanicola granulosus HTCC2516]
 gi|89046933|gb|EAR52987.1| exonuclease, putative [Oceanicola granulosus HTCC2516]
          Length = 203

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 49/181 (27%), Gaps = 35/181 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L            L   LE
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVVQMSGGDGHAHLVQVAKGQTSAPNLVAMLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           N DV  + H   F+   L   F          CT + ++          LK + + L  +
Sbjct: 69  NPDVLKLFHFGRFDIAALMNAFG--ARTAPVYCTKIASKLVRTFTDRHGLKVLLQDLVGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                           K +           + +        Y   DV     + ++L+ +
Sbjct: 127 D-------------VSKHQQQSDWGAETLSDAQLD------YAASDVLHLHRLREKLDEM 167

Query: 179 S 179
            
Sbjct: 168 L 168


>gi|330941897|gb|EGH44622.1| ribonuclease D [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 377

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 80/295 (27%), Gaps = 46/295 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--- 60
           + +D E           +  +     ++      D     L D    P++    +     
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLID----PLLINDWRPLSAL 71

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALK 117
           LEN DV  V H    +  VL       +P+     T + A    L  ++     V E L 
Sbjct: 72  LENPDVIKVLHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLD 129

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K E   + + R                           Y   D     E+F  L  
Sbjct: 130 IDLPKGETRSDWLQRPLS-------------------ETQISYAAEDAVHLAELFTILRA 170

Query: 178 LSSKEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             S ++  W LD            VD    +   ++           L  L       +R
Sbjct: 171 RLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREAR 230

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAV 288
                +  +  E  L     T+      L+  + + P+         +   ++A 
Sbjct: 231 ARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 285


>gi|47934776|gb|AAT39826.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFRCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|47934624|gb|AAT39750.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 198

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPSLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|47934808|gb|AAT39842.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 253

 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 43/175 (24%), Gaps = 35/175 (20%)

Query: 227 YGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQV--FNNRM 281
             +  +    + +   L  +        +       + VL+      P+A Q+       
Sbjct: 87  EWVDFNPTSRQHIARVLMAKGWKPNEFTDGGEPKVDESVLAKLP--YPEAKQLARLFMLQ 144

Query: 282 RASRSAVLKLNTLVEAMNSDG---RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE 338
           +            ++          + G++   GA  TGR +        +P        
Sbjct: 145 KRIGQLAEGDQAWLKQARKSDLGIFIHGSVNPNGA-VTGRATHSYPNVAQVP-------- 195

Query: 339 LDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                     R       G  L+ +D +G+E R L    
Sbjct: 196 ----------------GSQSEYGKECRQLFTVPPGWVLMGSDASGLELRCLGHFM 234


>gi|269794009|ref|YP_003313464.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Sanguibacter keddieii DSM 10542]
 gi|269096194|gb|ACZ20630.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Sanguibacter keddieii DSM 10542]
          Length = 568

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 98/413 (23%), Gaps = 130/413 (31%)

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT 307
           GL          Q++        P    +     + SR         ++   +DGR R  
Sbjct: 245 GLPATSTRSWELQQI------DHPAIAPLLEY-KKMSRLMTANGWHWLDTWVADGRFRPV 297

Query: 308 LQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSC 367
               G   TGRW+        LP                                 +RS 
Sbjct: 298 Y-VPGGVVTGRWASDGGGALQLP-------------------------------HQIRSA 325

Query: 368 VIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD 427
           V +  G  LVVAD A +E R+LA M+G+                  A  +    A    +
Sbjct: 326 VRSDPGWSLVVADAAQLEPRILAAMSGD---------AAMAEAGRAADMYEGMVATGAVE 376

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   K   L   Y                                              
Sbjct: 377 TRQQAKFGMLGAMY---------------------------------------------- 390

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
                       G    R+ +A+ Q           L +A  +  E G+ +     R  P
Sbjct: 391 -----GGTQGESGRMLPRITRAFPQAL--------ALVEAAARAGEQGEVVSTWLGRSSP 437

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
           L   +    +                   +  + T  R   R           +VQ  + 
Sbjct: 438 LPSAEWRSAHSAASAEG-------GSAAEQEAVRTQARSWGR------FTRNFVVQGTAA 484

Query: 608 DILAEGMMNATKA----------GYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
           +     M                G  +   +HDEI+  TP       + L   
Sbjct: 485 EWALCWMSLLRLRLRALSEGLTDGPHLAFFLHDEIMVHTPTGLADEVATLVQE 537


>gi|297559551|ref|YP_003678525.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843999|gb|ADH66019.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 554

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/433 (13%), Positives = 100/433 (23%), Gaps = 136/433 (31%)

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
              L   +       V +     ++   +    G  ++       +R+        P   
Sbjct: 211 LADLAARIGEAVGREV-NPDSPAQVLRAM-AWIGHPVDSTRSWVLERI------DHPVVP 262

Query: 275 QVFNNRMRASRSAVLKLNTLVEAM-----NSDGR---LRGTLQFLGASRTGRWSGCVFPP 326
            +       SR         ++A        DG           +G   +GRW+      
Sbjct: 263 LLLRY-KELSRLHSANGWAWLDAWVRRRPGPDGTTLGRFHPDYVVGGVVSGRWATRGGGA 321

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
             +PR                                +R  V A  G  LV AD   +E 
Sbjct: 322 LQIPR-------------------------------SLRGAVRADPGWVLVRADAGQLEP 350

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           RVLA ++G+     A    +                      R   K+  L+  Y   + 
Sbjct: 351 RVLAAVSGDDALAAAAAEEDLYARLAVH----------VGGDRDRAKIGMLSAMYGQTSG 400

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
               + +T                    +  A  +                        +
Sbjct: 401 DAAPLLATM----------------RRLYPRALEYVDSAARTGEGGG------------I 432

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
            ++W  + S V E W+    A        +   A+ R     V         +++L S R
Sbjct: 433 VRSWLGRTSPVPEGWD----AAVSGPGGERRRRAQGRFTRNFVVQATAAEWALVLLASLR 488

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVL 626
                D+                                               G  IV 
Sbjct: 489 QR-LPDMP---------------------------------------------EGAGIVF 502

Query: 627 TVHDEIVCETPDT 639
            VHDE+V   P  
Sbjct: 503 FVHDEVVLHVPAD 515


>gi|323145815|gb|ADX32056.1| hypothetical protein [Pseudomonas phage P3_CHA]
 gi|323146001|gb|ADX32241.1| hypothetical protein [Pseudomonas phage PAK_P3]
          Length = 885

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 84/300 (28%), Gaps = 41/300 (13%)

Query: 2   ATLFIDFETRSPIDLTKC----GICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
             +  D E    I            +  ED  +   A   D    E++    D VM    
Sbjct: 7   RRVVFDIEATGLIGEGTVDYTASPWRLKEDFKLHC-AVARDIDTDEVFKWGPDEVM--DF 63

Query: 58  KEALENTDVTIVAHNS-YFERTVLKACFN-------------LDIPIHRWICTLVLARSN 103
            + L      ++ HN   ++   LK                 ++    + + TLV++++ 
Sbjct: 64  AKWLGEECSVVIGHNIINYDLLALKLTCGLEYTIGWGETKDTINGNPVKIVDTLVISKTL 123

Query: 104 G----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    + A G+ L L+     + +           +       K  H E      E
Sbjct: 124 NPDRRPGHGIGAWGDKLGLAK---IDWRAKAVELGLITENAPRGAEFKTYHPE----MLE 176

Query: 160 YCKGDVTVTREIFK-RLEPLSSKEQEL--------WYLDQTINDRGYCVDVALAHTLNQI 210
           Y   DV V   ++K  +    +              ++    + RG+  D  LA    + 
Sbjct: 177 YNVRDVDVNLLVYKALMAEWGAWNWAPAVQTESYVAWVVTRQSHRGFFFDERLAQANVRE 236

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
           +D    +    +E +      +     K       E  +       +  ++ L       
Sbjct: 237 LDQLMEECRAIVEPILPPKKPTKTEAAKYCFPKTQEKKIKGGLGLSSNMEKFLEKMGGKH 296


>gi|300788813|ref|YP_003769104.1| DNA polymerase I [Amycolatopsis mediterranei U32]
 gi|299798327|gb|ADJ48702.1| DNA polymerase I [Amycolatopsis mediterranei U32]
          Length = 562

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 104/359 (28%), Gaps = 66/359 (18%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +L  ++     G   +      +   L    G+ +    +   + +        P 
Sbjct: 202 KALVELAAKISEAFGGRPVNPDSPPSVVRAL-ARAGIEVPAARKYLLKGI------DHPA 254

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +       SR         ++   +DGR R     +G   +GRW+        +P+ 
Sbjct: 255 VGPLLEY-KELSRLFTANGWAWLDEWVADGRFRPHY-VVGGVVSGRWASRGGGALQIPK- 311

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R+CV A  G KLVVAD A +E RVL  +
Sbjct: 312 ------------------------------VLRTCVRADSGWKLVVADAAQLEPRVLTAL 341

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFN---VAPAQVTKDQRAIGKVMELALGYQGGAKAFQ 449
           +G++         +       A       V  A   +D RA  K+  L+  Y G +    
Sbjct: 342 SGDRRLADVAAATDLYARLGEALFSGARWVPAADDDRDDRARAKIAMLSAMYGGTSG--- 398

Query: 450 KMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
                                  + + DA ++     +           +G        A
Sbjct: 399 -------------EAGPLLGLLRQRFPDAVSYVEHAAQAGERGERVRSRLGRTSPAPSAA 445

Query: 510 WRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
           WR     ++       +A E  ++  +A     R     V      +   +ML + R+ 
Sbjct: 446 WRALTGGLAS-----DEAAE--LKARRASRGWGRFTRNFVVQASAADMTAVMLATLRTR 497



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 44/152 (28%), Gaps = 23/152 (15%)

Query: 497 LFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKN 556
                    +    RQ+          +  A  Q  E G+ + +R  R  P         
Sbjct: 394 GGTSGEAGPLLGLLRQRFPDAVSY---VEHAA-QAGERGERVRSRLGRTSPA-------- 441

Query: 557 NLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMN 616
                 PS           +        R+ +R   +G      +VQA + D+ A  +  
Sbjct: 442 ------PSAAWRALTGGLASDEAAELKARRASRG--WGRFTRNFVVQASAADMTAVMLAT 493

Query: 617 AT---KAGYDIVLTVHDEIVCETPDTDEFNAS 645
                 A   +V   HDE++  TP       S
Sbjct: 494 LRTRLPAPAHLVFFQHDEVIVHTPAALAPEVS 525


>gi|47934812|gb|AAT39844.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 199

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 71/226 (31%), Gaps = 51/226 (22%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             + +   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKXIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                        RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196


>gi|146278808|ref|YP_001168967.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
 gi|145557049|gb|ABP71662.1| 3'-5' exonuclease [Rhodobacter sphaeroides ATCC 17025]
          Length = 204

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 48/182 (26%), Gaps = 35/182 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID ET         G+    +   + +      D    L            L+  L
Sbjct: 18  RVVAIDTET--------MGLDPRRD--RLCVVQLSAGDGDAHLVQIERGQTRAPNLERLL 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-K 117
            +  V  + H   F+   L+  F   +      CT + ++          LK +   L  
Sbjct: 68  TDPQVLKLFHFGRFDIAALQRAFG--VRTEPVWCTKIASKMVRTFTDRHGLKYLLLELVG 125

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K ++  +                       E      +Y   DV     + + LE 
Sbjct: 126 VDVSKQQQTSDWG-------------------AAELTDAQKDYAASDVLHLHRLKEELEA 166

Query: 178 LS 179
             
Sbjct: 167 RL 168


>gi|113955257|ref|YP_729699.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311]
 gi|113882608|gb|ABI47566.1| 3'-5' exonuclease family protein [Synechococcus sp. CC9311]
          Length = 214

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 55/203 (27%), Gaps = 34/203 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E          G+    +   + L      +  V              LKE +E 
Sbjct: 32  LAVDTE--------AMGLIHGRD--RLCLVQICDAEDQVSCVRIALGQTEAPRLKELMER 81

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV---LARSNGLPSALKAVGEAL-KLS 119
             +  V H + F+   L     L I ++   CT V   LAR+      LK V   L  + 
Sbjct: 82  ASIEKVFHFARFDVAALA--TGLGIRVNPIFCTKVGSRLARTYSPRHGLKEVVMELVGVE 139

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                       E       Y   D         RL+ + 
Sbjct: 140 LDKQAQSSDWGR------------------VDELSETQLAYAANDARYLLPARDRLKEML 181

Query: 180 SKEQELWYLDQTINDRGYCVDVA 202
            +E      ++         D+ 
Sbjct: 182 QREGRWELAERCFECIPVMSDLD 204


>gi|330879592|gb|EGH13741.1| ribonuclease D [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 377

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 75/275 (27%), Gaps = 41/275 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-DCVHDPVMPQVLKEALE 62
           + +D E           +  +     ++      D     L    + +   P  L   LE
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLIEPLLINNWAP--LSALLE 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKLS 119
           N DV  V H    +  VL       +P+     T + A    L  ++     V E L + 
Sbjct: 74  NPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLNID 131

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K E   + + R                           Y   D     E+F  L P  
Sbjct: 132 LPKGETRSDWLQRPLS-------------------DTQISYAAEDAVHLAELFAILRPRL 172

Query: 180 SKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           S ++  W LD            VD    +   ++           L  L       +R  
Sbjct: 173 SDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREVQARAR 232

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
              +  +  E  L     T+      L+  + + P
Sbjct: 233 NLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHP 267


>gi|148807513|gb|ABR13560.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 35/172 (20%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++   L    G+  +  TE       ++VL           ++    +   +
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPG---AKLIYEYLMLQK 101

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               ++++ +  +  DGR+ G +   GA  TGR +        +P  S            
Sbjct: 102 -RAAQIDSWLTHV-KDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------- 148

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                              RS     EG KL+  D +G++ R+LA    ++ 
Sbjct: 149 --------------YGRECRSFWCVPEGHKLIGCDASGLKLRMLAHYMRDER 186


>gi|126660170|ref|ZP_01731288.1| 3'-5' exonuclease [Cyanothece sp. CCY0110]
 gi|126618535|gb|EAZ89286.1| 3'-5' exonuclease [Cyanothece sp. CCY0110]
          Length = 214

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 54/189 (28%), Gaps = 27/189 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET   I           +   + L         V       +      LK+ LEN
Sbjct: 32  IAIDTETMGLIP----------QRDRLCLVQLCDSSGYVTAIRIEKEQKEAPNLKKLLEN 81

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  + H + F+    K  F +D       CT V ++          +           
Sbjct: 82  QSIVKIFHYARFDVAQFKYNFGIDTAP--IFCTKVASK----------LARTY----TGS 125

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K L+      E  +     +  N +        Y   DV     + ++L  +    +
Sbjct: 126 HGLKALVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLREQLITMLQ-RE 184

Query: 184 ELWYLDQTI 192
           E W + Q  
Sbjct: 185 ERWEIAQKC 193


>gi|219681348|ref|YP_002456112.1| putative DNA polymerase [Erwinia phage phiEa21-4]
 gi|199580615|gb|ACH89002.1| putative DNA polymerase [Erwinia phage phiEa21-4]
          Length = 896

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/445 (13%), Positives = 122/445 (27%), Gaps = 63/445 (14%)

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
                LTE++ + +  S  +   +   + + R         +    +  + +DGR+    
Sbjct: 491 RTSPKLTESSYETINGSLGQNIAKYNTLQHRRRTLENPKHDE-KGWLNMVRADGRMS--- 546

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
              GA+  G  +G +                          I + P    +    +R   
Sbjct: 547 --AGATVFGTSTGRMTQ----------------------WGIVNTPSSAAVYGAQMREVW 582

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
              EG  ++  D+   +  +L    G+     A   G++              +++ K  
Sbjct: 583 GCEEGTSVISVDMNSAQLVLLCNFMGDPDFTYAVTKGKEDVEFKRTEDGRYYCSKLDKYL 642

Query: 429 RAIGKVM-------ELALGYQGGAK--------AFQKMASTTGLNLNTFAHLVKTNSAPE 473
             +           +L + Y G              + +            L+   S   
Sbjct: 643 DPMIDKYLNYDEENDLYVVYTGTDAHSFNSIQFTLNEESDIITARATQDEDLIHKISNGR 702

Query: 474 EWEDAENFCRWMQENHPEHAIEDLF-IGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
           +      +C        + A            R+K+ +  +  ++  L + L   F+ T 
Sbjct: 703 KKAKNGIYCLLFGGGDEKFAKTIKVKTTEEGARIKQTYFTRLPKIKALLDRLEDEFKATK 762

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           +    +  +        ++      L    P    L Y  +G+     N       R+  
Sbjct: 763 KALGQVFGKTHPICKGGFITVAGAYLWCNSPHK-ILNYLLMGSEAQVQNEAVNWACRQML 821

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMT 652
             G +  N                    G  ++   HDE   E P+    +A  +   M 
Sbjct: 822 DKGLMKLNG--------------RKPAIGARLLCAYHDENSWEVPNEMVHDAKAVIDEMY 867

Query: 653 SNPSWAKGL----PLKAEGYESKRY 673
              S A GL     +   G   K +
Sbjct: 868 GTASKALGLLPETLVTGTGKVGKNW 892


>gi|260467189|ref|ZP_05813366.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029042|gb|EEW30341.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 241

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 50/164 (30%), Gaps = 42/164 (25%)

Query: 1   MATLFIDFETRSPID--------------------------LTKCGICKYAEDVCVILFA 34
           M  +  D ET                               +   G   +AE   V   +
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHAEAQAVHGIS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERTVLKACFNL----DIP 89
                      D    P   ++++E L  TD    VAHN+ F+   L   F       I 
Sbjct: 61  AA---------DLAGKPTFAEIVEEWLAFTDGAKLVAHNATFDIGFLNVEFGRLGHPVID 111

Query: 90  IHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
               + TL LAR      P++L A+     + + K  +   L+ 
Sbjct: 112 PGLVVDTLALARRKHPMGPNSLDALCRRYGIDNAKRTKHGALLD 155


>gi|67921652|ref|ZP_00515170.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501]
 gi|67856764|gb|EAM52005.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501]
          Length = 214

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 59/193 (30%), Gaps = 35/193 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID ET   +           +   + L         V              LK+ LEN
Sbjct: 32  LAIDTETMGLVP----------QRDRLCLVQLCDPSGYVTAIRIERGQTEAPNLKQLLEN 81

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
            ++  + H + F+    K  +N  +      CT V ++          LK++ + L  + 
Sbjct: 82  KNIVKIFHYARFDVGQFK--YNFSVETDPIFCTKVASKLARTYTGSHGLKSLVQELEGVE 139

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                +N    +        Y   DV    ++ ++L  + 
Sbjct: 140 LDKSSQSSDW------------GNSQNLSEAQ------LSYAANDVRYLIQLREQLITML 181

Query: 180 SKEQELWYLDQTI 192
              +E W + Q  
Sbjct: 182 K-REERWEIAQKC 193


>gi|148807507|gb|ABR13557.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  +       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTKKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|167041251|gb|ABZ06007.1| putative 3'-5' exonuclease [uncultured marine microorganism
           HF4000_005D21]
 gi|167045755|gb|ABZ10401.1| putative 3'-5' exonuclease [uncultured marine bacterium
           HF4000_APKG3108]
          Length = 214

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 32/202 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E          G+     D  + L  F   ++   +            + + LEN
Sbjct: 29  LAIDTE--------GSGLQIPHRD-KLSLVQFSAGNNDAYIVQPNRKSYKAPNIVKILEN 79

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLSS 120
             +T + H   ++ + L+        +     T + ++          LK +   L+  S
Sbjct: 80  AKITKIGHYLRYDVSGLEYFL--KCNVKNIFDTKIASKLCRTYSQNHGLKDLA--LEFCS 135

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179
           +K++                   D NK  + E      +YC  DV    +I   L  +  
Sbjct: 136 KKLD-------------KRLGSSDWNKNLY-ELTDAQLQYCSNDVIYLHKIKDALYKMLV 181

Query: 180 -SKEQELWYLDQTINDRGYCVD 200
                EL+            +D
Sbjct: 182 RENRLELYESCIQFLKTRIKLD 203


>gi|9634019|ref|NP_052093.1| DNA polymerase [Yersinia phage phiYeO3-12]
 gi|6599010|emb|CAB63614.1| DNA polymerase [Yersinia phage phiYeO3-12]
          Length = 704

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/502 (10%), Positives = 106/502 (21%), Gaps = 132/502 (26%)

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT- 258
           + A    L       R  ++    +    +       + ++  L     +  +   +   
Sbjct: 303 NKAQREGLEPCDLDTRDYMEGAPYTPVEFVTFKPSSRDHIQKKLQEAGWVPEKFTEKGAP 362

Query: 259 --CQRVLSSNKKLTPQ---AIQVFNNRMRASR---SAVLKLNTLVEAMNSDGRLRGTLQF 310
                VL   +   P+    I +    +   +    A       +  +  DG++ G +  
Sbjct: 363 VVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKRIGQAAEGDKAWLRYVQDDGKIHGAVNP 422

Query: 311 LGASRTGRWSGCVFPPQNLP-RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
            GA  TGR +        +P   S   E+                 P             
Sbjct: 423 NGA-VTGRATHSFPNLAQVPGVRSPYGEQCRSAFGAEHHLDGITGKP------------- 468

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
                     D +G+E R LA         +      +                     R
Sbjct: 469 ----WVQAGIDASGLELRCLAHFMARFDNGEYANEILNGD------IHTKNQNAAELPTR 518

Query: 430 AIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENH 489
              K       Y  G +                                           
Sbjct: 519 DNAKTFIYGFLYGAGDEKI----------------------------------------- 537

Query: 490 PEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ--TIENGKAIIARKRRDVP 547
                         + +KK + +    ++ L   + Q+         G+  +  KRR   
Sbjct: 538 ---GQIVGAGKERGKELKKKFLENTPAIAALREAIQQSLVNSSAWIGGEQKVQWKRR--- 591

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                       +    GR +  R                             ++Q+   
Sbjct: 592 -----------WIKGLDGRKVHVRSPHA---------------------ALNTLLQSAGA 619

Query: 608 DILAEGMMNATKAG-------------YDIVLTVHDEIVCETP--DTDEFNASMLYHLMT 652
            I    ++   +                 +   +HDE+       +  +    +    M 
Sbjct: 620 LICKLWIIKTEEMLIEKGLKHGWDGDFAQM-GWIHDEVQIACRTEEVAKVVVEVAQEAMR 678

Query: 653 SNPS-WAKGLPLKAEGYESKRY 673
                W     L  EG     +
Sbjct: 679 WVGEHWNFRCRLDTEGKIGPNW 700



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 61/240 (25%), Gaps = 62/240 (25%)

Query: 67  TIVAHNS-YFERTVLKACF------NLDIPIHRWICTLVLARSNGL-------------- 105
            IV HN   ++   L+         +  +P    I TLVL+R                  
Sbjct: 55  LIVFHNGHKYDVPALEKLAKLQLNRDFKLPRENCIDTLVLSRLLHANLKDTDMGLLRSGK 114

Query: 106 -------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                    AL+A G  L     + ++  + +      E  +     +            
Sbjct: 115 LPGRRFGSHALEAWGYRLGEMKGEYKDDFKAMLEEQGEEYVDGAEWVSFN------EPMM 168

Query: 159 EYCKGDVTVTREI-------------------------FKRLEPLSSKEQELWYLDQTIN 193
            Y   DV VT ++                         ++        E    +L     
Sbjct: 169 AYNVQDVVVTVKLLEKFLTDLHYFPAGMDFTKYDADLFWREAGESVDIEHRAAWLLAKQE 228

Query: 194 DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
             G+  +      L   +  +R +L ++L              E  K      TG  L  
Sbjct: 229 RNGFPFNTQAIEELYVELAAKRAELLRKLTETFGSWYQPKGGKELFKHP---RTGKPLPS 285


>gi|56695010|ref|YP_165357.1| exonuclease, putative [Ruegeria pomeroyi DSS-3]
 gi|56676747|gb|AAV93413.1| exonuclease, putative [Ruegeria pomeroyi DSS-3]
          Length = 204

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 43/172 (25%), Gaps = 33/172 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    +            L   LE
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVIQMSGGDGNTHIVQVEKGQTAAPNLCAMLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           N +V  + H   F+   L   F          CT + +R          LK + + L   
Sbjct: 69  NPEVLKLFHFGRFDIAALYHAFG--ALTAPVYCTKIASRLVRTYTDRHGLKNLCQEL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                    L     K +             +        Y   DV     +
Sbjct: 124 ---------LGVDISKQQQMSDWGAETLSEAQLD------YAASDVLYLHRL 160


>gi|91084227|ref|XP_969046.1| PREDICTED: similar to egalitarian CG4051-PA [Tribolium castaneum]
 gi|270009271|gb|EFA05719.1| egalitarian [Tribolium castaneum]
          Length = 812

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 53/207 (25%), Gaps = 28/207 (13%)

Query: 28  VCVILFAFGFDDHPVELWDC-VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
             + L           ++D      ++   LK+ LE++ +  + H+   +   L   FN+
Sbjct: 430 GQLTLLQIATMSGFSYVFDLITCPGMIDSGLKKLLESSQIVKIVHDCRNDSVNLFNQFNI 489

Query: 87  DIPIHRWICTLVLARSNGL-----------PSALKAVGEALKLSSQKMEEGKELIARFCK 135
            +       T                      AL A+ E        M           K
Sbjct: 490 TLNT--IFDTQAAHAVLTFQETGRPVYKAKSVALNALCEHYGAPINPM-----------K 536

Query: 136 GETHECLYDRNKPNHREAW-RLFGEYCKGDV--TVTREIFKRLEPLSSKEQELWYLDQTI 192
            +         K   R    R    Y   DV   V  +I+  +      E    +L+   
Sbjct: 537 DQLKNIYRRDQKYWSRRPLTREMILYASADVLSLVNEKIYYPMSKAIKMENRQLFLELCH 596

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLD 219
                 +D        +    E    +
Sbjct: 597 EQIFMHIDPESVKGRKRQRKTETEVSE 623


>gi|330808098|ref|YP_004352560.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376206|gb|AEA67556.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 377

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 69/271 (25%), Gaps = 33/271 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E           +  +     ++      D     L D +      Q L   LEN
Sbjct: 27  VALDTE--------FMRVDTFYPIAGLLQIG---DGKRAYLIDPLTIDN-WQPLAALLEN 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             V  V H    +  VL               T + A    L  ++              
Sbjct: 75  PAVLKVLHACSEDLEVLLRLTGSL--PAPLFDTQLAAAYLNLGFSMG------------- 119

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L+      E  +     +      +      Y   D     E+F  L P  S E+
Sbjct: 120 --YSRLVQEVLGIELPKGETRSDWLQRPLS-ETQISYAAEDAVHLAEVFVLLRPKLSDEK 176

Query: 184 ELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
             W L+            VD    +   ++           L  L       +R  +  +
Sbjct: 177 YRWVLEDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARARDLPR 236

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
             +  E  L     T+      L+  + + P
Sbjct: 237 NRIIREHSLWPLARTQPDNLGALAKIEDMHP 267


>gi|148807571|gb|ABR13586.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       + VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEEVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|332559626|ref|ZP_08413948.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
 gi|332277338|gb|EGJ22653.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
          Length = 204

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 47/181 (25%), Gaps = 35/181 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+    +   + +      D    L            L+  L 
Sbjct: 19  VVAIDTET--------MGLDPRRD--RLCVVQLSAGDGDAHLLQIERGQTSAPNLERLLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           +  V  + H   F+   LK  F   +      CT + ++          LK +   L  +
Sbjct: 69  DPQVLKLFHFGRFDIAALKRAFG--VRTEPVWCTKIASKMVRTFTDRHGLKYLLLELVGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                       E      +Y   DV     +   LE  
Sbjct: 127 DVSKQQQTSDWG-------------------AAELTDAQKDYAASDVLHLHRLKDELEAR 167

Query: 179 S 179
            
Sbjct: 168 L 168


>gi|115689891|ref|XP_001200735.1| PREDICTED: similar to exosome component 10, partial
           [Strongylocentrotus purpuratus]
          Length = 376

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 51/180 (28%), Gaps = 34/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y    C++  +         + D +      Q+L +A 
Sbjct: 138 KEIAVDLE--------HHSYRSYLGFTCLMQISTA---EHDYVVDTLELRSELQMLNDAF 186

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKA-VGEALKLS 119
            +  +  V H +  +   L+      + +     T   +RS G    +L + +    ++ 
Sbjct: 187 TDPKIVKVFHGANMDFDWLQRDLG--LYVVNMFDTHQASRSLGFPHHSLASLLSRYCQVE 244

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R  P           Y + D      I+  ++   
Sbjct: 245 ADKQYQLADW-------------RIRPLP------EEMLHYAREDTHYLLYIYHTMKNEL 285


>gi|47934634|gb|AAT39755.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 208

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 72/238 (30%), Gaps = 51/238 (21%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT------------------YGLVSSSR 234
              G+ +DV  A  L Q +  +  ++ ++L+ +                        +  
Sbjct: 1   ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60

Query: 235 CLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
             +++   L        +   +      ++VL       P+A  +    +   +    ++
Sbjct: 61  SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQI 116

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           ++ +     DGR+ G +   GA  TGR +        +P  S                  
Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------------- 158

Query: 352 SDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                        RS     EG KL+    +G+E R+LA    ++            +
Sbjct: 159 --------YGKECRSFWCVPEGHKLIGCGASGLELRMLAHYMRDERYTNEILMRRHPH 208


>gi|260436505|ref|ZP_05790475.1| 3'-5' exonuclease [Synechococcus sp. WH 8109]
 gi|260414379|gb|EEX07675.1| 3'-5' exonuclease [Synechococcus sp. WH 8109]
          Length = 225

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 53/196 (27%), Gaps = 28/196 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E          G+    +   + L      +  V              LK  LE 
Sbjct: 43  LAVDTE--------AMGLIHGRD--RLCLVQIADAEDRVACVRIGLGQTEAPNLKRLLEA 92

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             V  V H + F+   L A   +++      CT               VG  L  +    
Sbjct: 93  PTVEKVFHFARFDVAALAAGLGIEVNP--VFCT--------------KVGSRLGRTYTPR 136

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+L+      E  +     +     E       Y   DV       +RLE +    +
Sbjct: 137 HGLKDLVMELVGVELDKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEKML--RR 194

Query: 184 ELWYLDQTINDRGYCV 199
           E  +       +   V
Sbjct: 195 EGRWDLAQRCFQCVPV 210


>gi|126724660|ref|ZP_01740503.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150]
 gi|126705824|gb|EBA04914.1| exonuclease, putative [Rhodobacterales bacterium HTCC2150]
          Length = 203

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 42/181 (23%), Gaps = 35/181 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET     +             + L      D    +            L   L 
Sbjct: 19  VVAIDCETMGLNPIRD----------RLCLIQMSNGDGNAHMVQVEKGQTEAPNLCRMLA 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALKL 118
           + +V  + H   F+   +   F +        CT + ++              + E LK+
Sbjct: 69  DPNVLKLFHFGRFDIAAMHNAFGVLTEP--VYCTKIASKMVRTYTDRHGLRNLLQELLKV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                           K +             +        Y   DV     +  RL  L
Sbjct: 127 D-------------ISKFQQMSDWGAETLTKAQLD------YAASDVLHLHRLRDRLNEL 167

Query: 179 S 179
            
Sbjct: 168 L 168


>gi|318042597|ref|ZP_07974553.1| ribonuclease [Synechococcus sp. CB0101]
          Length = 234

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 28/200 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E          G+    +   + L     D   V     +       +LK+ +E+
Sbjct: 50  LAVDTE--------AMGLVHGRD--RLCLVQISDDQDNVCCIRILRGQSEAPLLKQLMEH 99

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           + +  V H + F+   L     L I ++   CT V +R     +    +           
Sbjct: 100 SGIVKVFHFARFDVAAL--GEGLGIAVNPLFCTKVASRLARTYTNRHGL----------- 146

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              KEL++  C  E  +     +     E       Y   DV       +RL  +    +
Sbjct: 147 ---KELVSELCGVELDKGAQSSDWGRVEELSETQLAYAANDVRYLLPARERLTQMLE--R 201

Query: 184 ELWYLDQTINDRGYCVDVAL 203
           E        + +   V   L
Sbjct: 202 EERLDLAQRSFQCIPVIAEL 221


>gi|158315552|ref|YP_001508060.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
 gi|158110957|gb|ABW13154.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
          Length = 673

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 63/207 (30%), Gaps = 49/207 (23%)

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK-LNTLVEAMNSDGRLRGTLQFLGAS 314
             T    LS+ + + P    +     +A R A       L   + +DGRLRG  +    +
Sbjct: 357 PDTRSGRLSALRGVHPVVEALL-AWRKAERIATTYGYRWLDTHVGADGRLRGEWRGSDGA 415

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
                +       NLP                                 +R  VIA  G 
Sbjct: 416 AGRMTAAAG--LHNLP-------------------------------ADLRVVVIAEPGY 442

Query: 375 KLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKV 434
           + V ADL  IE RVLA ++G+    +A                    A      R   KV
Sbjct: 443 RFVRADLGQIEPRVLAVVSGDPELTRATRQ----------DDLYAPVAASLGVDRPTAKV 492

Query: 435 MELALGYQGGAK----AFQKMASTTGL 457
             LA  Y         A ++M  T  +
Sbjct: 493 AVLAAMYGQTTGVAGQALRQMRETYPV 519



 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 42/183 (22%), Gaps = 24/183 (13%)

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            L          +        +     +      +            +  +  R+ +   
Sbjct: 465 ELTRATRQDDLYAPVAASLGVDRPTAKVAVLAAMYGQTTGV----AGQALRQMRETYP-- 518

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
                         ++   A         P            L    GR +  R    + 
Sbjct: 519 ---------VALAYLDAADATGRAAALGRPPPNPPVTDPQARLRTFGGRRVPLRFAAVDD 569

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA----GYDIVLTVHDEIV 633
                         T+G      +VQ  + ++     +   +A    G  IVL +HDE++
Sbjct: 570 GADENRVGM-----TWGRFARNAVVQGAAAELFKAWAVTVRQAIAPLGGAIVLCLHDELL 624

Query: 634 CET 636
              
Sbjct: 625 LHV 627


>gi|148807493|gb|ABR13551.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 27/168 (16%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +    +++   L    G+  +  TE     V     +                +    
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKLIYEYLMLQKRAA 104

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           ++++ +     DGR+ G +   GA  TGR +        +P  S                
Sbjct: 105 QIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP-------------- 148

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                          RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 ----------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|260577298|ref|ZP_05845271.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
 gi|259020479|gb|EEW23802.1| 3'-5' exonuclease [Rhodobacter sp. SW2]
          Length = 204

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 50/182 (27%), Gaps = 27/182 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+    +   + L      D    L            L++ L 
Sbjct: 19  VVAIDTET--------MGLDPRRD--RLCLVQLSSGDGNAHLVQIARGQTSAPNLEKLLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  + H   F+   +KA F +        CT + A+            +   L   K
Sbjct: 69  DPSVLKLFHFGRFDIAAMKAAFGVVTAP--VWCTKIAAKLVR------TFTDRHGL---K 117

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               + +     K +           + +       +Y   DV     +   LE    +E
Sbjct: 118 YLLQELVGVDVSKQQQTSDWGSETLSDAQ------KDYAASDVLYLHRLMAELERCLIRE 171

Query: 183 QE 184
             
Sbjct: 172 NR 173


>gi|270012325|gb|EFA08773.1| hypothetical protein TcasGA2_TC006462 [Tribolium castaneum]
          Length = 421

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 62/247 (25%), Gaps = 38/247 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E  S                   L      D    + D +        L E  
Sbjct: 93  KELGVDVE-YSDHGYKALT----------CLVQISTPDKD-YIIDAIALKDELHALNEVF 140

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEALKLSS 120
            N D+  + H++  +   L+    + +       T +  ++ G     L A+ +   ++ 
Sbjct: 141 TNPDIVKIFHSAVNDLKWLQQDLGVFV--VNLFDTQIAMKALGYKKLGLDALLQDYHVAK 198

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  + ++   R                        F +Y + D       + +L+    
Sbjct: 199 DKTMQRQDFRRRPLPP-------------------KFKDYARVDSHYLIGFYHKLKNELI 239

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
           +   L  +    N     +             +   +  +E+      ++          
Sbjct: 240 EANLLRAVLDDCN-NCCKILYPKVE---DEAYLSVRRNVEEIHKRQLLVLEKLNSWRHQI 295

Query: 241 TWLFLET 247
                + 
Sbjct: 296 AQYLDKN 302


>gi|182680101|ref|YP_001834247.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 236

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 47/159 (29%), Gaps = 32/159 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--- 57
           M  + +D ET            +  E  C+           +          +P+     
Sbjct: 1   MREIVLDTETTGLDPAEG---HRIIEIGCIE-ILHTIPTGQIFHVYIDPQRDIPEDAVRV 56

Query: 58  ----------KEALEN---------TDVTIVAHNSYFERTVLKACFNL----DIPIHRWI 94
                     K    +          D  +VAHN+ F+   L A   L     I   R +
Sbjct: 57  HGITAEFLAGKPVFADIASEFLAFIGDAKLVAHNAAFDMRFLNAELGLLGLEPIDSERVV 116

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL LAR     +  +L A+     + + +  +   L+ 
Sbjct: 117 DTLALARRRHPGASNSLDALCNRYGIDNTRRTKHGALLD 155


>gi|168702958|ref|ZP_02735235.1| DNA polymerase I (PolI) [Gemmata obscuriglobus UQM 2246]
          Length = 203

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 33/131 (25%), Gaps = 26/131 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET              A D  V L         V L D          L+     
Sbjct: 51  VAVDTETTGLDP---------ARD-RVRLIQVAA-GQDVALIDVFAFADPVADLRPLFAA 99

Query: 64  -TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----------SAL-KA 111
             D   V HN  F+   L      +    +   T++ +R                 L  A
Sbjct: 100 LADKEQVGHNLQFDLRFLA---PFEFVPGKVFDTILASRVRHAGDRAESNGRFRHGLGDA 156

Query: 112 VGEALKLSSQK 122
               L  S  K
Sbjct: 157 AARELGRSLDK 167


>gi|148807502|gb|ABR13555.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 27/168 (16%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +    +++   L    G+  +  TE     V     +                +    
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKLIYEYLMLQKRAA 104

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           ++++ +     DGR+ G +   GA  TGR +        +P  S                
Sbjct: 105 QIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP-------------- 148

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                          RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 ----------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|158425553|ref|YP_001526845.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
 gi|158332442|dbj|BAF89927.1| 3'-5' exonuclease [Azorhizobium caulinodans ORS 571]
          Length = 206

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 52/184 (28%), Gaps = 39/184 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---PVMPQVLKE 59
            + ID ET         G+  + +   + +      D   ++            P  L  
Sbjct: 19  VVAIDTET--------LGLKPHRD--RLCVVQLSNGDGTADVVQIPAGATAESAP-NLVR 67

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EA 115
            L + +V  + H   F+  VL   F +        CT + +R          LK +  E 
Sbjct: 68  MLADPNVVKLFHFGRFDIAVLLHTFGVTTAP--VFCTKIASRLTRTYTDRHGLKDLVREL 125

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +   K ++  +                       E       Y   DV       ++L
Sbjct: 126 LGVDLSKQQQSSDW-------------------AASELTDAQLAYAASDVLHLHACKEKL 166

Query: 176 EPLS 179
           E + 
Sbjct: 167 EAML 170


>gi|148807536|gb|ABR13571.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 27/168 (16%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +    +++   L    G+  +  TE     V     +                +    
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKLIYEYLMLQKRAA 104

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           ++++ +     DGR+ G +   GA  TGR +        +P  S                
Sbjct: 105 QIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP-------------- 148

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                          RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 ----------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|33866568|ref|NP_898127.1| putative ribonuclease D [Synechococcus sp. WH 8102]
 gi|33633346|emb|CAE08551.1| putative ribonuclease D [Synechococcus sp. WH 8102]
          Length = 214

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 55/203 (27%), Gaps = 28/203 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ L +D E          G+    +   + L      D  V              L+  
Sbjct: 29  MSALAVDTE--------AMGLIHGRD--RLCLVQIADADDRVCCIRIGLGQTSAPNLQRL 78

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE   V  V H + F+   L     L I +    CT               VG  L  + 
Sbjct: 79  LEAASVEKVFHFARFDVAALA--SGLGIAVSPIFCT--------------KVGSRLGRTY 122

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                 K+L+      E  +     +     E   +   Y   DV       ++LE +  
Sbjct: 123 TPRHGLKDLVMELVGVELDKGAQSSDWGRVDELSDVQLAYAANDVRYLLPARQKLEAML- 181

Query: 181 KEQELWYLDQTINDRGYCVDVAL 203
             +E  +           V   L
Sbjct: 182 -RREGRWDLAQRCFGCIPVIADL 203


>gi|148807569|gb|ABR13585.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|148807560|gb|ABR13582.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIANEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|326536930|ref|YP_004306337.1| DNA polymerase [Pseudomonas phage phiIBB-PF7A]
 gi|318054506|gb|ADV35682.1| DNA polymerase [Pseudomonas phage phiIBB-PF7A]
          Length = 712

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 77/682 (11%), Positives = 155/682 (22%), Gaps = 125/682 (18%)

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALE----NTDVTIVAHN-SYFERTVLKACFN----- 85
            F    +E         +   +K ALE      D  IV HN   ++   L          
Sbjct: 27  AFTGEVIEY----RPDDVLAYIK-ALEAEAAKPDGLIVFHNGIKYDIPALDRMKRELTGK 81

Query: 86  -LDIPIHRWICTLVLARSNGLPSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLY 143
            L+IP  + + TLV++R           G     +   K      L A   +    +  Y
Sbjct: 82  RLNIPRKKVLDTLVISRLIHANLKETDAGLLRRGIIPGKRYGSHALEAWGYRLGEMKGEY 141

Query: 144 DRNK----------PNHREAWRLFGE----YCKGDVTVTREIFKRLEPLSSKE------- 182
             +                 W  F E    YC  DV VT ++ + L              
Sbjct: 142 KDDFKAACREDGTEYVDGMEWEHFNEPMMAYCVQDVRVTTKLTRHLMQDPYYFRDGQGIR 201

Query: 183 -----QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                 +  +    +   G+      A  L   +  ER+ L   L              E
Sbjct: 202 ALVLEHDAAWTLAQMERNGFPFHKDGAERLYMELAAERSDLLVRLVQTFGSWYEPKGGTE 261

Query: 238 KLKTW----LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
                    +  +  +       +         +  T          +            
Sbjct: 262 PFLHPKTGKVLDKYPMVKTAKAGSPDYNADGKTRSKTLYVAGCMYTPITHVTFQPTSRPN 321

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
           +++ +   G           +  G         + +     +  E  ++I          
Sbjct: 322 IIKVLKDAGWEPTEF-----TDKGAPIVDDETLEGVEVADENKMECIKLIQRYLMIQKRI 376

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT- 412
               +     +R C    +G      +  G              ++ + +        + 
Sbjct: 377 GQLAEGDKAWLRYC-ETEDGFIHGSINPNGAVTGRATHSYPNMGQVPSAKAPFGPECRSL 435

Query: 413 --YARSFNVAPAQVTKDQRAIGKVME------LALGYQGGA------KAFQKMASTTGLN 458
                + ++   +           +E          Y GG             A+     
Sbjct: 436 FGAIYARHIPGWENVVQAGVDASGLELRCLGHFGAKYDGGGYVDQVLNGDVHWANAVAAG 495

Query: 459 LNTFAHLVKTNSAPEEW---EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           +   A   K N   + W        +         +          A + +KKA+ +   
Sbjct: 496 IAKDAVRDKENHQHDRWRDNAKTFIYAFLYGAGDAKIGSIVGGGAAAGKALKKAFLENTP 555

Query: 516 RVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGN 575
            +  L   L  +  ++    +                       +     R +  R   +
Sbjct: 556 VIKSLREGLEGSLIESQVYNRVTK----------KFDIKWKRRFIKGLDDRKIHVRSAHS 605

Query: 576 NRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNAT---------KAGYDI-- 624
                                    ++Q+    I    ++            K G+ I  
Sbjct: 606 ---------------------ALNALLQSAGAVICKAWVVEVERILMEDHGLKHGWTIQN 644

Query: 625 ------------VLTVHDEIVC 634
                       +  VHDE+  
Sbjct: 645 DDGTETPGDFAFMAWVHDELQI 666


>gi|238060029|ref|ZP_04604738.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
 gi|237881840|gb|EEP70668.1| DNA-directed DNA polymerase [Micromonospora sp. ATCC 39149]
          Length = 554

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 69/292 (23%), Gaps = 65/292 (22%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +L   +          +    +L    F   G+ L +      + V        P 
Sbjct: 204 RRLAELAARIAEAFGVRQVHADSPAELLR-AFARAGVELPNTRAWVLRGV------DHPA 256

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V  +     R          +A    GR        G   +GRW+        +P+ 
Sbjct: 257 VPLVLEH-KELYRIWTAHGWAWRDAWVRGGRFHPEY-VPGGVVSGRWATRGGGALQIPK- 313

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R  V+A  G +LVVAD   +E RVLA +
Sbjct: 314 ------------------------------VIRRAVVADPGWRLVVADAGQLEPRVLAAV 343

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+     A   G+                      R   KV  L   Y           
Sbjct: 344 SGDARLAAAGGAGDLYAALARDSFGG---------DRPRAKVALLGAMYGQTGG------ 388

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                       +         +  A  +            +   ++G  C 
Sbjct: 389 ----------MAVPALTVLRRNYPTAFAYVEAAARTGEAGGLVRSWLGRTCP 430



 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 39/171 (22%), Gaps = 21/171 (12%)

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
              +             G          R+ +         +  A       G       
Sbjct: 370 DRPRAKVALLGAMYGQTGGMAVPALTVLRRNYPTAFAY---VEAAARTGEAGGLVRSWLG 426

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           R   P      D ++  +           D    R+    +  + TR           ++
Sbjct: 427 RTCPPGAAGFADGDDAGIDPE-----AAVDPQGPRARAARSRGRFTR---------NFVI 472

Query: 603 QAVSRDI--LAEGMMN--ATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
           QA + +        +      +  ++V   HDE++   P       +    
Sbjct: 473 QATAAEWASTLLATLRTALAGSDAELVFFQHDEVIVHCPAGQADEVAEAIR 523


>gi|56551610|ref|YP_162449.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761264|ref|ZP_04759352.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260752797|ref|YP_003225690.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56543184|gb|AAV89338.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374171|gb|EER63668.1| ribonuclease D [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552160|gb|ACV75106.1| ribonuclease D [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 390

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 75/287 (26%), Gaps = 47/287 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E        +           + L     D     +        M   L + L
Sbjct: 24  DFIAIDTE------FIRENSYW----PELCLIQIADDKEAAAIDPLAPGLDMT-PLTDLL 72

Query: 62  -ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
             N D+  V H    +  ++               T + A + G       VGE +  S 
Sbjct: 73  VNNEDILKVFHAGGQDLEIILHHTGK--MPFPLFDTQIAAMALG-------VGEQVGYS- 122

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L+ R+   +  +     +  +     R   +Y   DVT    +F  L     
Sbjct: 123 -------NLVERYLSIKLDKGARFTDWSHRPLDRRQL-DYAIADVTHLATLFPMLLKELR 174

Query: 181 KEQELWYLDQTIN---DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            +    +LDQ +    D    ++      L   +   +  +   L++L       ++   
Sbjct: 175 DKGRGAWLDQEMERLADPSQYINDPEKSWLRIRMPNRKADILGRLKALAAWREIEAQNR- 233

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
                      +    + +      L+      P+           S
Sbjct: 234 ----------NIPRGRIAKD---ETLADLAIHPPRRQSDLVKVRGLS 267


>gi|254522754|ref|ZP_05134809.1| ribonuclease D [Stenotrophomonas sp. SKA14]
 gi|219720345|gb|EED38870.1| ribonuclease D [Stenotrophomonas sp. SKA14]
          Length = 359

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 62/256 (24%), Gaps = 29/256 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L         + +   +    M + L   L +  +  V H++  +    K      
Sbjct: 36  PQLALVQMAVGRDILLIDPLIPG--MTEALAPWLADESIIKVMHSASEDLVAFKWACG-- 91

Query: 88  IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +       T + A   G+   +   K V E   ++  K E   + + R            
Sbjct: 92  VLPRPLFDTQIGASLAGIGGGMGYQKLVAEITGVALAKGETRSDWMRRPLS--------- 142

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV--DVA 202
                         +Y   DV     +   +           +L          V  D  
Sbjct: 143 ----------ESQLQYAADDVEHLFALHDAIGARLQALGRQQWLHDDGERLLASVANDED 192

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVS-SSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
               L            Q             +R  ++ ++W+           T      
Sbjct: 193 RWPHLAMRSAQFLDAAAQHRLLRLLRWREVQARSSDRPRSWILDNELAATLARTPPADAD 252

Query: 262 VLSSNKKLTPQAIQVF 277
            L +  +  P+A +  
Sbjct: 253 ALGALFEQFPKAPRKL 268


>gi|148807532|gb|ABR13569.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DVPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|262276742|ref|ZP_06054535.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114]
 gi|262223845|gb|EEY74304.1| 3'-5' exonuclease family protein [alpha proteobacterium HIMB114]
          Length = 206

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 60/212 (28%), Gaps = 32/212 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E      LT            + L         V L         P  LKE LEN
Sbjct: 23  IAIDGEFSGLNPLTD----------KLHLLQLCDGSDFVHLVKFEGKYNAP-NLKEILEN 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV---LARSNGLPSALKAVGEALKLSS 120
             +  + H    +   LK     DI +     T +   ++R       LK +        
Sbjct: 72  NKIKKIFHFGRADLAFLKQHL--DIHVTNIFDTKIGSKISRKFSPHHGLKDLCR------ 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                  +LI      E     + +    + E       Y   DV    +I   LE +  
Sbjct: 124 -------DLININLSKEYQTSDWGKKIEEYSED---QILYACKDVLYLHKIKNELEKILK 173

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
           +E +L   +Q          + L      I +
Sbjct: 174 RENKLELAEQCFKFLETRTALDLVGLTGDIFE 205


>gi|254463169|ref|ZP_05076585.1| 3'-5' exonuclease [Rhodobacterales bacterium HTCC2083]
 gi|206679758|gb|EDZ44245.1| 3'-5' exonuclease [Rhodobacteraceae bacterium HTCC2083]
          Length = 203

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 55/205 (26%), Gaps = 35/205 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L            L + L 
Sbjct: 19  VVAIDCET--------MGLHPHRD--RLCVIQMSGGDGNAHLVQVAKGQTEAPNLCKMLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKA-VGEALKL 118
           + +V  + H   F+   ++  F          CT + ++          LK  + E L +
Sbjct: 69  DPNVLKLFHFGRFDIAAMQNAFGAVTAP--VYCTKIASKLIRTYTDRHGLKNLLQELLNI 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +  +                           EY   DV     +   L   
Sbjct: 127 DISKQQQSSDWGSAKLTNAQ-------------------LEYAASDVLYLHRLRTELNKR 167

Query: 179 SSKEQELWYLDQTINDRGYCVDVAL 203
             +E  +       +      ++ L
Sbjct: 168 LIREDRMVIAQACFDFLPMRANLDL 192


>gi|149201444|ref|ZP_01878419.1| exonuclease, putative [Roseovarius sp. TM1035]
 gi|149145777|gb|EDM33803.1| exonuclease, putative [Roseovarius sp. TM1035]
          Length = 203

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 52/202 (25%), Gaps = 27/202 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L            L   LE
Sbjct: 19  VVAIDCET--------MGLHPHRD--RLCVVQLSGGDGHAHLVQVSKGQTTAPNLARLLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N DV  + H   F+   ++  F          CT + ++            +   L   K
Sbjct: 69  NPDVLKLFHFGRFDIAAMQNAFG--ALAAPVYCTKIASKLIR------TYTDRHGL---K 117

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               + L     K +        +    +        Y   DV     +   L     +E
Sbjct: 118 YLLQELLNIDISKQQQSSDWGADSLSAAQLD------YAASDVLYLHRLRDELNARLIRE 171

Query: 183 QELWYLDQTINDRGYCVDVALA 204
             +       +       + LA
Sbjct: 172 GRMELAQACFDFLPQRALLDLA 193


>gi|325277926|ref|ZP_08143467.1| ribonuclease D [Pseudomonas sp. TJI-51]
 gi|324096941|gb|EGB95246.1| ribonuclease D [Pseudomonas sp. TJI-51]
          Length = 377

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 78/275 (28%), Gaps = 41/275 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  +     +I      D     L D  +     P  L E LE
Sbjct: 27  VAVDTE--------FMRVDTFYPKAGLIQIG---DGQRAFLIDPLLIGNWQP--LAELLE 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKLS 119
           N+ V  V H    +  VL               T + A    L  ++     V E L + 
Sbjct: 74  NSGVVKVLHACSEDLEVLLRLTGKL--PQPLFDTQLAAGYLNLGFSMGYSRLVQEVLGID 131

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K E   + + R                           Y   D     E+F  L P  
Sbjct: 132 LPKGETRSDWLQRPLSDTQVS-------------------YAAEDAVHLAELFTVLRPRL 172

Query: 180 SKEQELWYLDQTINDRGYC---VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           S ++  W L+            V+ A  +   ++      +    L  L      ++R  
Sbjct: 173 SDDKYAWVLEDGAELVAALRREVEPATLYRDVKLAWKLAPQQLAVLRELCAWRERTARSR 232

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  +  E  L      + +    L+  +++ P
Sbjct: 233 DVPRNRVLKEHSLWPIAKNQPSNLSALAKVEEMHP 267


>gi|148807497|gb|ABR13553.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807509|gb|ABR13558.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807517|gb|ABR13562.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807522|gb|ABR13564.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807550|gb|ABR13577.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807573|gb|ABR13587.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807587|gb|ABR13594.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807591|gb|ABR13595.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807593|gb|ABR13596.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807595|gb|ABR13597.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|148807554|gb|ABR13579.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAEMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|312959586|ref|ZP_07774103.1| ribonuclease D [Pseudomonas fluorescens WH6]
 gi|311286303|gb|EFQ64867.1| ribonuclease D [Pseudomonas fluorescens WH6]
          Length = 377

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 72/271 (26%), Gaps = 33/271 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E           +  +     +I      D     L D +      Q L   LEN
Sbjct: 27  VALDTE--------FMRVDTFYPIAGLIQIG---DGVRAYLIDPLTIDN-WQPLAALLEN 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             V  V H    +  VL       +P+     T + A    L  ++              
Sbjct: 75  PSVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMG------------- 119

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L+      +  +     +      +      Y   D     E++ RL P  S ++
Sbjct: 120 --YSRLVQAVLDIDLPKGETRSDWLQRPLS-ETQISYAAEDAVHLAEVYTRLRPKLSDDK 176

Query: 184 ELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
             W L+            VD    +   ++           L  L       +R  +  +
Sbjct: 177 YAWVLEDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREQQARARDLPR 236

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
             +  E  L     T+      L   + + P
Sbjct: 237 NRIVREHSLWPLAKTQPDNLAALGKIEDMHP 267


>gi|307249710|ref|ZP_07531689.1| hypothetical protein appser4_5130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858218|gb|EFM90295.1| hypothetical protein appser4_5130 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 68

 Score = 64.8 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 614 MMNATKA-----GYDIVLTVHDEIVCETPDTDEF-NASMLYHLMTSNPSWAKGLPLKAEG 667
           M+   KA        +++ VHDE+V E  +      + ++   M         +PL AE 
Sbjct: 1   MIGIDKAIRGDDNIKMIMQVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIAEV 58

Query: 668 YESKRY 673
                +
Sbjct: 59  GVGDNW 64


>gi|148807583|gb|ABR13592.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGATIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|195031476|ref|XP_001988346.1| GH10618 [Drosophila grimshawi]
 gi|193904346|gb|EDW03213.1| GH10618 [Drosophila grimshawi]
          Length = 1147

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 71/595 (11%), Positives = 134/595 (22%), Gaps = 66/595 (11%)

Query: 41  PVELWDCVHDPV---MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
            VE  D         M   L          +V HN  ++R  L   + L+    R++ T+
Sbjct: 222 HVEPIDVAQSDRPHYMLDELIPLGSGAPGLVVGHNVSYDRARLLEQYLLEDTGTRFVDTM 281

Query: 98  VLARSNGLPSA-----LKA----VGEALKLSSQ----KMEEGKELI--ARFCKGETHECL 142
            L       ++     LK+      E L    Q     + +   L         E     
Sbjct: 282 SLHMCVSGVTSYQRAMLKSKKEPAAEDLDWLEQSSLNSLVDVHRLYCGGEPLSKEPRNIF 341

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY---CV 199
            +      R+ ++    YC GDV  T  I   L PL ++          + + G     V
Sbjct: 342 VEGTLEQVRQQFQSLVNYCAGDVEATHRILTVLYPLYAERFPHPVTLAGMLEMGSAYLPV 401

Query: 200 DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
           +      +            +    L      +   L   +    L           +  
Sbjct: 402 NSNWERYIRDAQLAYEDLNIEAKYHLGRRAEEACALLHDEQYRQHLWLWDE----DWSVQ 457

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
           Q  L    K          +  +                N++ R           +    
Sbjct: 458 QLKLKQLPKRKQLPTVPLQDERQL---------------NAEQRRLLQKFQHLYDQRALL 502

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
                     P+  R   +              D       S                  
Sbjct: 503 PARRPLLPGYPQWYRKLCQKPPPDYSEEELQQQDEPWTPGASGISTGM------------ 550

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELAL 439
               I  ++L+              G    V   +   +       +       + E A 
Sbjct: 551 ---QIAPKLLSLCWEGYPLHYQKGHGWGFLVPFRSGDNSRQTDLPIEQLLERCAIPEFAR 607

Query: 440 GYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFI 499
            Y         M    G      A         +  +  E   +       +   +  F 
Sbjct: 608 LYAAAENGDMAMDMLPGQVEEQLAKRQFFKKISQRQQRLEEKYKGSGVWCNQVLEDCCFF 667

Query: 500 GTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLI 559
                +   ++R  +    +    L++  E  + +G        R + +  M     N  
Sbjct: 668 LKLPHKNGPSFRVGNPLSKDF---LNKFSENALSSGDPTCQAASRVIEIARMMSYWRNNR 724

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
             + S   +        +           R   YG    + +V      +    M
Sbjct: 725 DRILSQMVIWLP----AQQLPADLRSHAERTA-YGAICPQVVVAGT---LTRRAM 771



 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 89/295 (30%), Gaps = 35/295 (11%)

Query: 360  ISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVTTYA 414
            I   +R+ V A  G KLV AD+   E  + +     +  GE               +  +
Sbjct: 786  IGSELRAMVQAPPGYKLVGADVDSQELWIASVLGDAYAHGEHGATPLGWMTLSGSKSNGS 845

Query: 415  RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
               ++  A+V    R   KV+  A  Y  G +  + +      +L+      K       
Sbjct: 846  DMHSI-TAKVVGISRDHAKVLNYARIYGAGQQFAETLLQQFNPSLSATEAKAKAMKMFGA 904

Query: 475  WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
             +    +   ++E   +   +  + G   +R+     Q++  +             + + 
Sbjct: 905  TKGKRIY--RLREEFHDELEDRTYSGYEAKRLA---LQRNRSI------GEVFHRPSWQG 953

Query: 535  GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
            G       R +      + +   L   L            +          Q  R   + 
Sbjct: 954  GTESAMFNRLEEIATREQPETPFLGCRL------------SRALETRGDADQEQR---FL 998

Query: 595  GKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                  +VQ+ + D   ++   M           L+ HDE+     D   + A++
Sbjct: 999  PTRVNWVVQSGAVDFLHLMLVSMRWLLGPHARFCLSFHDELRYLVKDELAYKAAL 1053


>gi|148807597|gb|ABR13598.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|118589455|ref|ZP_01546861.1| 3'-5' exonuclease [Stappia aggregata IAM 12614]
 gi|118438155|gb|EAV44790.1| 3'-5' exonuclease [Stappia aggregata IAM 12614]
          Length = 206

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 57/189 (30%), Gaps = 27/189 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+  + +   + +      D   ++            L   + +
Sbjct: 22  VAVDSET--------LGLNPHRD--RLCVVQLSPGDGSADVVQIARGQSEAPNLAALMTD 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           T    + H + F+  VL+   N+ +      CT + ++            +   L   K 
Sbjct: 72  TSKPKIFHFARFDVAVLQHYLNIRVSP--VWCTKIASKLVR------TYTDRHGL---KD 120

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              + L     K +           + + A      Y   DV     + +RLE +  +E+
Sbjct: 121 ITRELLGVELSKQQQSSDWAAETLSDAQLA------YAASDVLHLHALKERLEMMLEREE 174

Query: 184 ELWYLDQTI 192
                +   
Sbjct: 175 RTHIAEACF 183


>gi|229589039|ref|YP_002871158.1| putative ribonuclease [Pseudomonas fluorescens SBW25]
 gi|229360905|emb|CAY47765.1| putative ribonuclease [Pseudomonas fluorescens SBW25]
          Length = 377

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 72/271 (26%), Gaps = 33/271 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E           +  +     +I      D     L D +      Q L   LEN
Sbjct: 27  VALDTE--------FMRVDTFYPIAGLIQIG---DGVRAYLIDPLTIDN-WQPLAALLEN 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             V  V H    +  VL       +P+     T + A    L  ++              
Sbjct: 75  PAVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMG------------- 119

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L+      E  +     +      +      Y   D     E++ RL P  S E+
Sbjct: 120 --YSRLVQAVLDIELPKGETRSDWLQRPLS-ETQISYAAEDAVHLAEVYTRLRPRLSDEK 176

Query: 184 ELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
             W LD            VD    +   ++           L  L       +R  +  +
Sbjct: 177 YAWVLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREQQARARDLPR 236

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
             +  E  L     ++      L   + + P
Sbjct: 237 NRIIREHSLWPLAKSQPDNLAALGKIEDMHP 267


>gi|119385336|ref|YP_916392.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
 gi|119375103|gb|ABL70696.1| 3'-5' exonuclease [Paracoccus denitrificans PD1222]
          Length = 204

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 48/181 (26%), Gaps = 35/181 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+    +   + L      D    L            L   L 
Sbjct: 19  VVAIDTET--------MGLDPRRD--RLCLVQLSSGDGNAHLVQIAKGQREAPNLARMLA 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALK-AVGEALKL 118
           +  V  + H   F+   L+A F +        CT + ++          LK  + E + +
Sbjct: 69  DPKVLKLFHFGRFDIAALEAAFGVVTKP--VWCTKIASKMVRTYTDRHGLKYLLSELVGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                       E      EY   DV     +   LE  
Sbjct: 127 DISKQQQTSDWG-------------------AAELSEAQLEYAASDVLYLHALKAELEKR 167

Query: 179 S 179
            
Sbjct: 168 L 168


>gi|148807489|gb|ABR13549.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              +++  +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDPWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|320167779|gb|EFW44678.1| exosome component 10 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 945

 Score = 64.8 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 45/178 (25%), Gaps = 32/178 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
              ID E  S   L             V L         V + D +        L+E   
Sbjct: 314 EFAIDLEHHSYRSL----------QGFVCLMQVSTRTEDV-VIDTLAVRSSMHHLREVFA 362

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEALKLSSQ 121
           N ++  V H +  +   L+  F +         T   AR   L   +L            
Sbjct: 363 NPNILKVFHGADMDVVWLQHDFGI--YTINMFDTGQAARVLELGSYSLAH---------- 410

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  L+  FC     +     +            +Y + D      I+ RL    
Sbjct: 411 -------LLRYFCNVTADKKYQLADWRIRPIP-AEMLQYAREDTHYLLYIYDRLRNEL 460


>gi|254386231|ref|ZP_05001542.1| DNA polymerase I [Streptomyces sp. Mg1]
 gi|194345087|gb|EDX26053.1| DNA polymerase I [Streptomyces sp. Mg1]
          Length = 413

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 67/438 (15%), Positives = 110/438 (25%), Gaps = 130/438 (29%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +L   +       V        +    F E G+ L+       Q +        P 
Sbjct: 49  RRLAELADRISDAFGRRV-RPDLPADVIK-AFAEAGIKLKSTRRWEIQEI------DHPA 100

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
                    +  R       + +     DGR R      G + TGRW         +P+ 
Sbjct: 101 VEP-LVEFKKLYRIYTAHGWSWLADWVHDGRFRPEF-IPGGTFTGRWVTNGGGALQIPK- 157

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R  V+A  G +LVVAD   +E RVLA +
Sbjct: 158 ------------------------------VIRRAVVADPGWRLVVADADQMEPRVLAAI 187

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           + +   ++     EDLY     + F             + K+  L   Y           
Sbjct: 188 SRDPAFMEVAGRPEDLYTAISRQGFAGDRD--------MAKLAVLGAVY----------G 229

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
            T+G  L   A L                                             R+
Sbjct: 230 QTSGDGLKNLAAL---------------------------------------------RR 244

Query: 513 KHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYR 571
           +  R       + +A +   E         R   P    +    +    +P         
Sbjct: 245 RFPRAVAY---VDEAAKAGEEGRLVRTWLGRTCPPPAASEHGDTDGEAGIPQAAPQSSAP 301

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE------------GMMNATK 619
           D  + R+    ++    R    G      +VQ  + D                GM     
Sbjct: 302 DREDGRTPAYASSHSRAR----GRFTRNFVVQGSAADWALLLLAALRQAIAAAGM----- 352

Query: 620 AGYDIVLTVHDEIVCETP 637
              ++V   HDE++   P
Sbjct: 353 -RAELVFFQHDEVIVHCP 369


>gi|148807558|gb|ABR13581.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRLLAHYMRDER 186


>gi|148807599|gb|ABR13599.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  ++      S+ 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMIYEY--LMSQK 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  +GR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VSGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|148807511|gb|ABR13559.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                  +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFKVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|37522692|ref|NP_926069.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
 gi|35213694|dbj|BAC91064.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
          Length = 208

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 26/201 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E          G+  + +   + L     +   V L            L++ LE 
Sbjct: 26  LAVDSE--------AMGLLPHRD--RLCLVQLCDEAGLVSLVRLSAGLTQASQLQKVLEA 75

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             V  + H + F+  +L+    + +     +CT V ++      +         L     
Sbjct: 76  PAVIKLFHYARFDVAMLRHHLGIRVQP--IVCTKVASK-LARTYS-----PRHGL----- 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+L+      E  +     +     E       Y   DV      +++LE +  +E 
Sbjct: 123 ---KDLVLETVGVELDKSAQSSDWGAVLELSEEQLRYAANDVRYLIPAWRKLETMLRREG 179

Query: 184 ELWYLDQTINDRGYCVDVALA 204
                 +        VD+ L 
Sbjct: 180 RFELARRCFAHLETQVDLDLL 200


>gi|288924467|ref|ZP_06418439.1| hypothetical protein FrEUN1fDRAFT_8137 [Frankia sp. EUN1f]
 gi|288344186|gb|EFC78743.1| hypothetical protein FrEUN1fDRAFT_8137 [Frankia sp. EUN1f]
          Length = 457

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 59/212 (27%), Gaps = 43/212 (20%)

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASR 315
             T    L++ +   P    +   R     +       L E + +DGRLRG  +    + 
Sbjct: 254 PDTRSWRLTALRAAHPAVDALLRWRRAERVATTYGFRWLDEHVGADGRLRGEWRGSDGAA 313

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
               +       NLP                                 +R  V+A  G +
Sbjct: 314 GRMTAAAG--LHNLP-------------------------------ADLRVVVVAEPGHQ 340

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
            V ADL  IE RVLA ++G++    A                    A      R   KV 
Sbjct: 341 FVRADLGQIEPRVLAVVSGDRELAAAT----------GQDDLYAPVAARLGVDRPTAKVA 390

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
            LA  Y   +    +       +       + 
Sbjct: 391 VLAAMYGQTSGTAGQALRQMRRSYPVALAYLD 422


>gi|148552971|ref|YP_001260553.1| ribonuclease D [Sphingomonas wittichii RW1]
 gi|148498161|gb|ABQ66415.1| ribonuclease D [Sphingomonas wittichii RW1]
          Length = 395

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 71/261 (27%), Gaps = 37/261 (14%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL-ENTDVTIVAHNSYFERTVLKACFNL 86
             + L     +       D     +    L + L EN +V  V H    +  ++      
Sbjct: 44  PDLCLIQIA-NSEEAAAIDPKAKDIDLTPLLDLLVENEEVLKVFHAGGQDLEIVHNLTGK 102

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
               +    T V A + G       +GE +  S         L+      +  +     +
Sbjct: 103 T--PYPLFDTQVAAMAMG-------LGEQIGYS--------NLVETMLGIKLDKGARFTD 145

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC---VDVAL 203
                   +   +Y  GDVT    IF R+     K     +LD  +   G      ++  
Sbjct: 146 WARRPLD-KRQIDYAIGDVTHLSAIFPRMLERLRKSGRGGWLDNEMERLGDPASYANLPE 204

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
                  +   + ++   L+++       +R              L    + +      L
Sbjct: 205 LAWTRIRLPSRKPEVLGRLKAIAAWREREARSK-----------NLPRGRIAKD---ETL 250

Query: 264 SSNKKLTPQAIQVFNNRMRAS 284
           +      P+     +     S
Sbjct: 251 ADLASHPPKVQADLSRVRGLS 271


>gi|47934814|gb|AAT39845.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 166

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L        +   +      ++VL       P+A  +    +   + 
Sbjct: 14  EFNVGSRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK- 69

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 70  RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 116

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 117 -------------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 154


>gi|149408180|ref|YP_001294614.1| hypothetical protein ORF021 [Pseudomonas phage PA11]
          Length = 255

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 27/193 (13%)

Query: 6   IDFETRSPIDL------TKCGICKYAEDVCVILFAFG-FDDHPVELWDCVHDPV--MPQV 56
           ID ET   +           G  +  +   ++ FA        +   +   D    + Q 
Sbjct: 7   IDIETAPKVAYVWRFFKEMIGAKQVLDHGHIMSFAAKKLGSDDIIYVENRKDDDKYITQE 66

Query: 57  LKEALENTDVTIVAHNS-YFERTVLK-ACFNLDIPI---HRWICTL-VLARSNGLPSA-L 109
           L   L++ D+ +VAHN   F+   +        +     ++ + TL V  R        L
Sbjct: 67  LISVLDDADI-VVAHNGDKFDLPTINGRALVHGLKPPSPYKTVDTLKVAHREFKFERNNL 125

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           + +   L  +    +EG               L+      + EAW    +Y   DV    
Sbjct: 126 EYLAHVLGCAP---KEGHA-------KFPGFELWLECLRQNEEAWAEMRKYNIQDVLTLE 175

Query: 170 EIFKRLEPLSSKE 182
           E++ ++ P     
Sbjct: 176 EVYTKMRPWIRNH 188


>gi|315500006|ref|YP_004088809.1| ribonuclease d [Asticcacaulis excentricus CB 48]
 gi|315418018|gb|ADU14658.1| ribonuclease D [Asticcacaulis excentricus CB 48]
          Length = 382

 Score = 64.4 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 68/279 (24%), Gaps = 51/279 (18%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L      +    + D +   +  +   
Sbjct: 23  ITVDTEFMRETTYW---------------PKLCLIQAA-SEEHAGIIDPLSPDLDLKPFL 66

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L +  +  V H    +  +      L         T V A + G       V      
Sbjct: 67  DLLTDPAILKVFHACRQDVEIFNN---LGAMPAPVFDTQVAAMAAGFG---DQVA----- 115

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L+ +  K +  +     +      +     +Y  GDVT    ++ +L   
Sbjct: 116 -------YDSLVRQVIKVDIDKGSRFTDWSRRPLS-EQQLQYALGDVTHLARLYPKLVEK 167

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER-------TKLDQELESLTYGLVS 231
              +    ++   + D          +  +      R        K     + +      
Sbjct: 168 LKAQNRYEWVAAEMADLTDP----KLYNTSPDDAWRRLRPRKPSLKYMAVFKEVAAWRER 223

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
            ++  ++ +  +  + G+        T        +   
Sbjct: 224 VAQERDQPRGRILKDEGVDEIATQLPTDAAAFDRLRSTP 262


>gi|148807601|gb|ABR13600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAEMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|157414190|ref|YP_001485056.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215]
 gi|157388765|gb|ABV51470.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9215]
          Length = 211

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 61/202 (30%), Gaps = 26/202 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E          G+    +   + L     +           +      LK  LE+
Sbjct: 29  LAIDTE--------AMGLIHGRD--RLCLVQICNEFGRTSCIKIELNTSSSTHLKALLED 78

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H + F+   LK   NL+I      CT + ++          +           
Sbjct: 79  EKITKIFHYARFDVAALK--CNLEINTKNIFCTKIASK----------LARTY----TNK 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+LI      E  +     +  ++ +  +   +Y   DV    E   +L+ +  +E 
Sbjct: 123 HGLKDLINELLGIELDKSSQSSDWGSNEDLTKEQLDYAANDVRYLIEAMHKLKVILKREN 182

Query: 184 ELWYLDQTINDRGYCVDVALAH 205
                 +         D+ +  
Sbjct: 183 RYELAQKCFETVSVHADLDILK 204


>gi|300867874|ref|ZP_07112515.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506]
 gi|300334110|emb|CBN57691.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506]
          Length = 210

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 60/196 (30%), Gaps = 28/196 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           +  D ET         G+  + +   + L      +  V +            LK+ +E 
Sbjct: 25  IAADTET--------MGLLPWRD--RLCLVQLCDAEGIVTVVRIAKGQREAPNLKKLMEA 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           +++  + H + F+   LK   ++ +      C+ + ++          +           
Sbjct: 75  SNIVKIFHFARFDMATLKYHLDIHVAP--VFCSKIASK----------LARTY----TGK 118

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+L+    + E  +     +  N          Y   DV     I  R + ++  ++
Sbjct: 119 HGLKDLVQELEQVELDKTAQSSDWGNAANLSEKQLRYAANDVR--YLISAREKLITMLQR 176

Query: 184 ELWYLDQTINDRGYCV 199
           E  +       +   V
Sbjct: 177 EDRWQLAQECFQCLPV 192


>gi|148807491|gb|ABR13550.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL           ++    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIGIPE---AKMIYEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|145252306|ref|XP_001397666.1| exosome complex exonuclease Rrp6 [Aspergillus niger CBS 513.88]
 gi|134083214|emb|CAK42852.1| unnamed protein product [Aspergillus niger]
          Length = 782

 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           +  Y     V L      D    +          QVL E  
Sbjct: 248 KEIAIDLE--------HHDVHSY--QGLVSLMQISTRDKDWVVDTLKPWREELQVLNEVF 297

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            + ++  V H S  +   L+      + +     T   A +   P        +LK   Q
Sbjct: 298 TDPNILKVLHGSSMDIIWLQRDLG--LYVVGMFDTYHAACALNYPK------RSLKFLLQ 349

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           K    +              +                +Y + D      I+  +    
Sbjct: 350 KFVNFEADKRYQMADWRIRPI-----------PEGMFDYARSDTHYLLHIYDHIRNEL 396


>gi|330469036|ref|YP_004406779.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris
           AB-18-032]
 gi|328812007|gb|AEB46179.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris
           AB-18-032]
          Length = 548

 Score = 64.0 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 69/292 (23%), Gaps = 65/292 (22%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
                L  ++          +    +L    F   G+ L +      + V        P 
Sbjct: 198 RRLADLAAQIAEAFGVRQVHADSPAELLR-AFARAGIDLPNTRSWVLRGV------DHPA 250

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              V        R          +A   DGR +      G   +GRW+        +P+ 
Sbjct: 251 VPLVLEY-KELYRIWTAHGRAWRDAWVRDGRFQPEY-VPGGVVSGRWATRGGGALQIPK- 307

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          +R   +A  G + VVAD   +E RVLA +
Sbjct: 308 ------------------------------VIRRAAMADPGWRFVVADAGQLEPRVLAAV 337

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
           +G+     A  TG+                      R   K+  L   Y           
Sbjct: 338 SGDARLAAAGATGDLYQALARDAFGG---------DRGRAKLALLGAMYGQTGG------ 382

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                       +         +  A  +            +   ++G  C 
Sbjct: 383 ----------EAVPALAGVRGNYPTAFGYVEAAARTGEAGGLVRSWLGRTCP 424



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 40/171 (23%), Gaps = 22/171 (12%)

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
              +             G          R  +         +  A       G       
Sbjct: 364 DRGRAKLALLGAMYGQTGGEAVPALAGVRGNYPTAFGY---VEAAARTGEAGGLVRSWLG 420

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           R   P          +     +G      D  + R+    +  + TR           ++
Sbjct: 421 RTCPPGSAGFATDEGVADPDAAG------DPQSPRARAARSRGRFTR---------NFVI 465

Query: 603 QAVSRDI--LAEGMMNATKAG--YDIVLTVHDEIVCETPDTDEFNASMLYH 649
           QA + +       ++    AG   ++V   HDE++   P       +    
Sbjct: 466 QATAAEWASTLLAVLRGELAGTEAELVFFQHDEVIVHCPAEQAERVAEAVQ 516


>gi|260431736|ref|ZP_05785707.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415564|gb|EEX08823.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157]
          Length = 204

 Score = 64.0 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 53/205 (25%), Gaps = 35/205 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    +            L   LE
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVIQMSGGDGHSHIVQVEKGQTEAPNLCAMLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           N +V  + H   F+   L   F          CT + +R          LK + + L   
Sbjct: 69  NPEVLKLFHFGRFDIAALYHAFG--ALAAPVYCTKIASRLVRTYTDRHGLKNLCQEL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +             +        Y   DV    ++   L+   
Sbjct: 124 ---------LGIDISKQQQMSDWGAETLTEAQLD------YAASDVLYLHQLRAALDARL 168

Query: 180 SK--EQELWYLDQTINDRGYCVDVA 202
            +    E+             +D+A
Sbjct: 169 EREGRTEMAQACFDFLPMRARLDLA 193


>gi|229472173|gb|ACQ72601.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472401|gb|ACQ72715.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.0 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 63/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    E             
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 134 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +  + M      +   +     +  VHDE
Sbjct: 158 QGSAGCVAKQWMVHTHNVIKLNQIKAYQLAFVHDE 192


>gi|91088803|ref|XP_968984.1| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
          Length = 377

 Score = 64.0 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 62/247 (25%), Gaps = 38/247 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E  S                   L      D    + D +        L E  
Sbjct: 93  KELGVDVE-YSDHGYKALT----------CLVQISTPDKD-YIIDAIALKDELHALNEVF 140

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEALKLSS 120
            N D+  + H++  +   L+    + +       T +  ++ G     L A+ +   ++ 
Sbjct: 141 TNPDIVKIFHSAVNDLKWLQQDLGVFV--VNLFDTQIAMKALGYKKLGLDALLQDYHVAK 198

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  + ++   R                        F +Y + D       + +L+    
Sbjct: 199 DKTMQRQDFRRRPLPP-------------------KFKDYARVDSHYLIGFYHKLKNELI 239

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
           +   L  +    N     +             +   +  +E+      ++          
Sbjct: 240 EANLLRAVLDDCN-NCCKILYPKVE---DEAYLSVRRNVEEIHKRQLLVLEKLNSWRHQI 295

Query: 241 TWLFLET 247
                + 
Sbjct: 296 AQYLDKN 302


>gi|169767462|ref|XP_001818202.1| exosome complex exonuclease Rrp6 [Aspergillus oryzae RIB40]
 gi|83766057|dbj|BAE56200.1| unnamed protein product [Aspergillus oryzae]
          Length = 760

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 47/194 (24%), Gaps = 31/194 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           +  Y     V L      D    +          Q+L E  
Sbjct: 240 KEIAIDLE--------HHDVHSY--QGLVSLMQISTRDKDWVVDTLKPWREELQMLNEVF 289

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H S  +   L+      + +     T   A +   P        +LK   Q
Sbjct: 290 ADPSILKVFHGSSMDIIWLQRDLG--LYVVGMFDTYHAACALNYPK------RSLKFLLQ 341

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-- 179
           K    +              +                +Y + D      IF  L      
Sbjct: 342 KFVNFEADKRYQMADWRIRPI-----------PEGMFDYARSDTHYLLHIFDHLRNELIE 390

Query: 180 SKEQELWYLDQTIN 193
           +   E   +D  + 
Sbjct: 391 NSTPENNLIDYVLE 404


>gi|229472215|gb|ACQ72622.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+  A                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              + +++A+      + +L   +    E               
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIKAYQLAFVHDE 192


>gi|148807585|gb|ABR13593.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A ++    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEA-KMVYEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|148807539|gb|ABR13572.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     +GR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKNGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|21328703|gb|AAM48709.1| 3'- 5' exonuclease family protein [uncultured marine
           proteobacterium]
          Length = 204

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 46/180 (25%), Gaps = 33/180 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET                   + +      D    L            L   LE
Sbjct: 19  IVAIDCETMGLNPKRD----------RLCVVQLSSGDGHAHLVQVAKGQTAAPNLCRMLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           + +V  + H   F+   +K  F          CT + +R          LK + + L   
Sbjct: 69  DPNVLKLFHFGRFDIAAMKEAFG--ALTAPVYCTKIASRMTRTYTDRHGLKNLLQEL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +        +    +       EY   DV     + +RL  + 
Sbjct: 124 ---------LCVDISKQQQSSDWGAADLTKAQV------EYAASDVLYLHALRERLNEML 168


>gi|148807515|gb|ABR13561.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.0 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTR-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|170723061|ref|YP_001750749.1| ribonuclease D [Pseudomonas putida W619]
 gi|169761064|gb|ACA74380.1| ribonuclease D [Pseudomonas putida W619]
          Length = 377

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 74/276 (26%), Gaps = 43/276 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEAL 61
           + +D E           +  +     +I      D     L D +   ++     L E L
Sbjct: 27  VALDTE--------FMRVDTFYPKAGLIQIG---DGERAYLIDPL---LIVDWQPLGELL 72

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKL 118
           E+  V  V H    +  VL               T + A    L  ++     V E L L
Sbjct: 73  EDAGVVKVLHACSEDLEVLLRLTGKL--PQPLFDTQLAAGYLNLGFSMGYSRLVQEVLGL 130

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K E   + + R                           Y   D     E+F  L P 
Sbjct: 131 ELPKGETRSDWLQRPLSDTQVS-------------------YAAEDAVHLAELFAALRPR 171

Query: 179 SSKEQELWYLDQTINDRGYC---VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            S ++  W L+            V+    +   ++      +    L  L       +R 
Sbjct: 172 LSDDKYAWVLEDGAELVAALRREVEPETLYRDVKLAWKLGRQQLAVLRELCAWREREARS 231

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
            +  +  +  E  L      +      L+   ++ P
Sbjct: 232 RDVPRNRILKEHSLWPMAKNQPDNLSALAKIDEMHP 267


>gi|254526817|ref|ZP_05138869.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202]
 gi|221538241|gb|EEE40694.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9202]
          Length = 211

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 61/202 (30%), Gaps = 26/202 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E          G+    +   + L     +           +      LK  LE+
Sbjct: 29  LAIDTE--------AMGLIHGRD--RLCLVQICNEFGRTSCIKIELNTSSSTHLKALLED 78

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +T + H + F+   LK   NL+I      CT + ++          +           
Sbjct: 79  DKITKIFHYARFDVAALK--CNLEINTKNIFCTKIASK----------LARTY----TNK 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+LI      E  +     +  ++ +  +   +Y   DV    E   +L+ +  +E 
Sbjct: 123 HGLKDLINELLGIELDKSSQSSDWGSNEDLTKEQLDYAANDVRYLIEAMHKLKVILKREN 182

Query: 184 ELWYLDQTINDRGYCVDVALAH 205
                 +         D+ +  
Sbjct: 183 RYELAQKCFETVPVHADLDILK 204


>gi|148807552|gb|ABR13578.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       +RVL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNERVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|115665303|ref|XP_001177704.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
 gi|115976409|ref|XP_001186302.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
          Length = 579

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 31/173 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKE 59
            + +D E          G+       C+ L      D    L+D   +P + +    LK+
Sbjct: 391 VIGLDCE----------GVGLGRAGGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKK 440

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            LE+  +  V H+   +   L       + +     T +  R+           E L  +
Sbjct: 441 ILEHNSILKVIHDCKSDAYSL--YHGFGVKLKNVFDTSIAMRTIM---------EQLNRN 489

Query: 120 SQKMEEGKELIARFCKGET-HECLYDRNKPNHREAW------RLFGEYCKGDV 165
                  K L     +G +  +  + +      + W           Y   D 
Sbjct: 490 RSYQVGFKALCELLGEGASHKDDDFVKKMLETPDFWKIRPLTEEMIYYAASDA 542


>gi|330955621|gb|EGH55881.1| ribonuclease D [Pseudomonas syringae Cit 7]
          Length = 235

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 64/236 (27%), Gaps = 22/236 (9%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L   LEN DV  V H    +  VL       +P+     T + A    L  ++       
Sbjct: 9   LSALLENPDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMG------ 60

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                       L+      +  +     +      +      Y   D     E+F  L 
Sbjct: 61  ---------YSRLVQEVLDIDLPKGETRSDWLERPLS-ETQISYAAEDAVHLAELFTILR 110

Query: 177 PLSSKEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           P  S ++  W LD            VD    +   ++           L  L       +
Sbjct: 111 PRLSDDKYAWLLDDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREREA 170

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ-AIQVFNNRMRASRSAV 288
           R     +  +  E  L     T+      L+  + + P+         +   ++A 
Sbjct: 171 RARNLPRNRIVREHSLWPLAKTQPDNLGALARIEDMHPRTVRHDGEFLLELIKTAS 226


>gi|254472171|ref|ZP_05085571.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
 gi|211958454|gb|EEA93654.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
          Length = 236

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 46/184 (25%), Gaps = 35/184 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--- 57
           M  +  D ET     L      +  E   V L  F                 MP+     
Sbjct: 1   MREISFDTETTGLNPLDG---DRLVEIGGVELINF-IPTGRTCHLYVNPQRDMPEEAFRI 56

Query: 58  ----------KEALEN---------TDVTIVAHNSYFERTV----LKACFNLDIPIHRWI 94
                     K    +          D  +V HN+ F+       L  C    I   + +
Sbjct: 57  HGLSAEFLSDKPVFADVADEFLDFVGDARLVIHNAPFDMGFINMELARCNKPKISNTQVL 116

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKPN 149
            TL LAR        +L A+     + + K      L+                 +N   
Sbjct: 117 DTLKLARRKFPTGSVSLDALCSRYGIDNSKRVYHGALLDAELLAEVYLEMNGGKQKNLGL 176

Query: 150 HREA 153
             + 
Sbjct: 177 MPDD 180


>gi|148807524|gb|ABR13565.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 35/172 (20%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++   L    G+  +  TE       ++VL       P+A  +    +   +
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGI--DVPEAKTI-YEYLMLQK 101

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               ++++ +     DGR+ G +   GA  TGR +        +P  S            
Sbjct: 102 -RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------- 148

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                              RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 --------------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|319780604|ref|YP_004140080.1| DNA polymerase III, subunit epsilon [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166492|gb|ADV10030.1| DNA polymerase III, epsilon subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 233

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 42/164 (25%)

Query: 1   MATLFIDFETRSPID--------------------------LTKCGICKYAEDVCVILFA 34
           M  +  D ET                               +   G   + E   V   +
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHVEAQAVHGIS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERTVLKACFNL----DIP 89
                      D    P   ++++E L+ TD    VAHN+ F+   L   F       I 
Sbjct: 61  AA---------DLAGKPTFAEIVQEWLDFTDGAKLVAHNATFDVGFLNVEFGRLGHPVID 111

Query: 90  IHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
               + TL LAR      P++L A+     + + K  +   L+ 
Sbjct: 112 NGVVVDTLALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLD 155


>gi|307295006|ref|ZP_07574848.1| ribonuclease D [Sphingobium chlorophenolicum L-1]
 gi|306879480|gb|EFN10698.1| ribonuclease D [Sphingobium chlorophenolicum L-1]
          Length = 388

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 78/291 (26%), Gaps = 47/291 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL- 61
            + ID E              Y  D  + L     D+H     D     +    L + + 
Sbjct: 25  YIAIDTE--------FMRENSYWPD--LCLVQVA-DEHEAAAIDPKAPGLDLSPLLDLMV 73

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           +N DV  V H    +  ++          H    T + A + G       +GE +   + 
Sbjct: 74  DNEDVLKVFHAGGQDLEIIYNLTGKT--PHPLFDTQIAAMALG-------LGEQIGYGNL 124

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L  +  KG        R     +        Y  GDVT   +IF ++     +
Sbjct: 125 VDAW---LGVQLDKGARFTDWARRPLDKRQID------YAIGDVTYLIQIFPKMLEELRR 175

Query: 182 EQELWYLDQTINDRGYCVDVAL---AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
                +LDQ +       +             +   +  +   L++L       +     
Sbjct: 176 TGRGDWLDQEMERISDPSNYENKPDEAWQRVRIASRKADVLGRLKALAAWREMEA----- 230

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
                  +  L    + +      L+      P+  +        S +   
Sbjct: 231 ------QDKNLPRGRIVKD---ETLADIASHPPRTQEDLGKVRGLSATWKT 272


>gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score = 64.0 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 65/238 (27%), Gaps = 41/238 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------- 52
           M  +  D ET    +       +  E   + LF   F    V                  
Sbjct: 1   MREIIFDTETTGLDN----RADRIIEIGGIELFNH-FPTGNVIHIYINPGDQKVHPDALA 55

Query: 53  -----------------MPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIH 91
                            + + +     +     +AHN+ F+       L       I   
Sbjct: 56  VHGITDEFLKDKKPFAEVAEEILTFFGDA--KWIAHNATFDMGFINAELARIGLPPILPE 113

Query: 92  RWICTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKP 148
           R + TL +AR      P++L A+     + +  + + G  L +        E +  R   
Sbjct: 114 RVLDTLSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQAA 173

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                    G+  +GD   T E    +  +  + + L         + +   VA    
Sbjct: 174 FGLSMTATSGQNGRGDA--TEEDDVVIASVLERPRPLAPRLSQSEAQAHEALVAKLGE 229


>gi|47934794|gb|AAT39835.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 63.6 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 42/225 (18%)

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           +     +     + Q            +    ++           E          +   
Sbjct: 2   KQTLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTE---------FNVGS 52

Query: 236 LEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
            +++   L        +   +      ++VL       P+A  +    +   +    +++
Sbjct: 53  RKQIAERLVGVGVKFKQKTEKGAVIVNEKVLEGI--DIPEAKTI-YEYLMLQK-RAAQID 108

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
           + +     DGR+ G +   GA  TGR +        +P  S                   
Sbjct: 109 SWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------------- 149

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                       RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 150 -------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 187


>gi|229472457|gb|ACQ72743.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 62/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    E             
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 134 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +    M      +   +     +  VHDE
Sbjct: 158 QGSAGCVAKLWMVHTHSVIKLNQIEAYQLAFVHDE 192


>gi|213029602|ref|ZP_03344049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 79

 Score = 63.6 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 26/113 (23%), Gaps = 35/113 (30%)

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
              + +++  V E         ++                             +    GR
Sbjct: 1   MDLYFERYPGVLEYMERTRAQAKE--------------------------QGYVETLEGR 34

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
            L   D+ ++ +       +               +Q  + DI+   M+    
Sbjct: 35  RLYLPDIKSSNAARRAGAERA---------AINAPMQGTAADIIKRAMIAVDA 78


>gi|167628093|ref|YP_001678593.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167598094|gb|ABZ88092.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 366

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 85/282 (30%), Gaps = 44/282 (15%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D      L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQIATEN-EIFLIDTLEDLDF-SKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K+  E+T++  + H++  +  ++K  F  D  ++    T + A   G             
Sbjct: 64  KDIFEDTNIQKIIHSATNDIPIIKRFF--DCEVNNIFDTQLAASFLG------------- 108

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI-FKRLE 176
             +Q     K L+      E  +     +      + + F +Y   DV    EI +    
Sbjct: 109 --TQSQISLKALLKDILDIEMEKESQFSDWRKRPLSQKQF-DYALKDVKHLIEIKYHLES 165

Query: 177 PLSSKEQELWYLDQTINDRGYCVDV-ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            L+  + + ++ ++ +  +    +     H     +     K  +    +     S ++ 
Sbjct: 166 KLNQTDYKQYFYEELLEIQKTEFNTVENIHNKIGNIQKFSEKTQKNAILVAQWRESMAQQ 225

Query: 236 LEKLKTWLFLE--TGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
                 ++F             ++         KKL P   +
Sbjct: 226 KNIPVRFIFDNKILYAIAHKNPKSLNSFDTEELKKLKPWIKK 267


>gi|86136835|ref|ZP_01055413.1| exonuclease, putative [Roseobacter sp. MED193]
 gi|85826159|gb|EAQ46356.1| exonuclease, putative [Roseobacter sp. MED193]
          Length = 204

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 54/206 (26%), Gaps = 37/206 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    +            L   LE
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVIQLSDGDGNAHIVQVAKGQTEAPNLCAMLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           + +   + H   F+   +   F          CT + +R          LK + + L  +
Sbjct: 69  DPETLKLFHFGRFDIAAMYHAFG--ALTAPVYCTKIASRLVRTYTDRHGLKNLTQELIGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                +     +        Y   DV     + + L   
Sbjct: 127 DISKQQQMSDW-------------GAKVLTEAQLD------YAASDVLYLHRLREALNKR 167

Query: 179 SSK--EQELWYLDQTINDRGYCVDVA 202
             +    E+             +D+A
Sbjct: 168 LEREGRMEMAQACFDFLPMRAKLDLA 193


>gi|331697147|ref|YP_004333386.1| DNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
 gi|326951836|gb|AEA25533.1| DNA-directed DNA polymerase [Pseudonocardia dioxanivorans CB1190]
          Length = 502

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 73/234 (31%), Gaps = 43/234 (18%)

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
                L  ++ +     V +     ++    F   G+ L        ++V        P 
Sbjct: 162 RRLAALADDIATAFGRPV-NPDSPAEVLR-AFGRVGVELPSTRSWVLKQV------DHPA 213

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
              +       +R         +     DGR R     +G   +GRW+        +P+ 
Sbjct: 214 VAPLLAY-KELARLHSAHGWAWLRTWVHDGRFRPEY-VVGGVVSGRWATRGGGALQIPK- 270

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
                                          VR+ V A  G +LVVAD A +E R+LA M
Sbjct: 271 ------------------------------AVRAAVRADPGNRLVVADAAQLEPRILAAM 300

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
           AG+    +A   G D     YA   +        D RA  K+  L+  Y   + 
Sbjct: 301 AGDAALARA--GGRDQDSDLYAGLAHELFGGAGPDGRAKAKLAVLSAIYGQTSG 352



 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 12/75 (16%)

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMM-------NATKAG--YDIVLTVHDEIVC 634
             Q  R    G      +VQA + +     ++           AG    +V   HDE++ 
Sbjct: 400 DEQPARARARGRFTRNFVVQATAAEW---ALVLLAELRAALHAAGDPARLVFFQHDEVLL 456

Query: 635 ETPDTDEFNASMLYH 649
             P      A+ L  
Sbjct: 457 HGPADGAGLAARLVQ 471


>gi|229472351|gb|ACQ72690.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472367|gb|ACQ72698.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472447|gb|ACQ72738.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 62/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    E             
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 134 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +    M      +   +     +  VHDE
Sbjct: 158 QGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|327198477|ref|YP_004327065.1| DNA polymerase [Erwinia phage phiEa104]
 gi|311875173|emb|CBX44433.1| DNA polymerase [Erwinia phage phiEa104]
          Length = 896

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/445 (12%), Positives = 116/445 (26%), Gaps = 63/445 (14%)

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
                LTE++ + +  S  +   +   + + R         +    +  + +DGR+    
Sbjct: 491 RTSPKLTESSYETINGSLGQNIAKYNTLQHRRRTLENPKHDE-KGWLNMVRADGRMS--- 546

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
              GA+  G  +G +                          I + P    +    +R   
Sbjct: 547 --AGATVFGTSTGRMSQ----------------------WGIVNTPSSAAVYGAQMREVW 582

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
              EG  ++  D+   +  +L    G+     A   G++               ++ K  
Sbjct: 583 TCEEGTSVISVDMNSAQLVLLCNFMGDPDFTYAVTKGKEDVEFKRTEDGRYYCEKLDKYL 642

Query: 429 RAIGKVM-------ELALGYQGGAK--------AFQKMASTTGLNLNTFAHLVKTNSAPE 473
                         +L + Y G              + +            L+   S   
Sbjct: 643 DPTIDKYLKYDDENDLYVVYTGTDAHSFNSIQFTLNEESDIITARATQDEDLIHKISNGR 702

Query: 474 EWEDAENFCRWMQENHPEHAIEDLF-IGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
           +      +C        + A            R+K+ +  +  ++  L + L   F  T 
Sbjct: 703 KKAKNGIYCLLFGGGDEKFAKTIKVKTTDEGARIKQTYFTRLPKIKALLDRLADEFTATK 762

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
           +    +  +        ++      L    P    L Y  +G+     N       R+  
Sbjct: 763 KALGQVFGKSHPICKGGFISVAGAYLWCNSPHK-ILNYLLMGSESQVQNEALNWACRQML 821

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLM- 651
             G +  N                    G  ++ + HDE   E P+     A  +   M 
Sbjct: 822 EKGLMKLNG--------------RKPAIGARLLCSYHDENSWEVPNELIHEAKEVIDQMY 867

Query: 652 ---TSNPSWAKGLPLKAEGYESKRY 673
              +          +   G   K +
Sbjct: 868 GTASKTLGLLPDTLVTGTGKVGKSW 892


>gi|194432078|ref|ZP_03064367.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012]
 gi|194419607|gb|EDX35687.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012]
          Length = 72

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 2  ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            L+ D ET   I +   G   YAE V V+LFA+  +D PV +WD      +P  L EA+
Sbjct: 4  NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAI 62

Query: 62 ENTDVT 67
             +  
Sbjct: 63 AAPETL 68


>gi|229472349|gb|ACQ72689.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 62/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    E             
Sbjct: 105 -------------------KGKEIRQAYMDATPGLEKLVTAVKSKAES------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 134 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +    M      +   +     +  VHDE
Sbjct: 158 QGSAGCVAKRWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|118582016|ref|YP_903266.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
 gi|118504726|gb|ABL01209.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
          Length = 382

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 54/207 (26%), Gaps = 39/207 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E  S        +  Y E   V L           +            L   L
Sbjct: 31  REVAVDLEMDS--------LHHYRE--KVCLIQISTRTESWLIDPLALKD--LSPLAAPL 78

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE-ALKLS 119
            N D+ IV H + ++   L     +++       T++ +R  G+    L A+ +    + 
Sbjct: 79  GNRDILIVMHGADYDIRSLHRDHGIEV--TNLFDTMIASRLLGITEFGLAALLKARFGIE 136

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +   R    E                      Y   D      ++  L    
Sbjct: 137 LNKKYQKADWSKRPLSPE-------------------MRAYAVADTADLLRLYDMLRDEL 177

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHT 206
            ++         + +    V  A    
Sbjct: 178 LEKGR----LAWLEEECRLVCQARVSE 200


>gi|148807564|gb|ABR13584.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     +GR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKEGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|304411369|ref|ZP_07392983.1| ribonuclease D [Shewanella baltica OS183]
 gi|307305309|ref|ZP_07585057.1| ribonuclease D [Shewanella baltica BA175]
 gi|304350224|gb|EFM14628.1| ribonuclease D [Shewanella baltica OS183]
 gi|306911612|gb|EFN42037.1| ribonuclease D [Shewanella baltica BA175]
          Length = 369

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 84/308 (27%), Gaps = 47/308 (15%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L +D E     T                   + L    +D   + L D V  P +   
Sbjct: 24  KILVLDTEFVRTRTYY---------------AKLGLIQ-AYDGKTLALIDPVALPDL-AQ 66

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               L + ++  + H+   +  V                + + A   G+           
Sbjct: 67  FWALLSDPNIIKLVHSCSEDLEVFAHYG--KCQPTPLFDSQIAASLCGMGH--------- 115

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +   K+ E        C GE  +    R     R        Y   DV    +++ +LE
Sbjct: 116 GVGYAKLVE-------TCLGEVIDKGESRTDWIRRPLTEAQLSYAANDVLYLYQLYPQLE 168

Query: 177 PLSSKEQELWYLDQTINDR--GYCVDVALAHTLNQIVD--VERTKLDQELESLTYGLVSS 232
              S +  L +L +       G   D  L     ++ +           L+ L    +  
Sbjct: 169 AKLSVQGRLAWLYEEGERMTQGRLADPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRLEK 228

Query: 233 SRCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +   +    ++  + GL  L      +    L     LT Q  ++              L
Sbjct: 229 ALVRDLALGFVVKDHGLIALAKKQPKSSAD-LFKLNDLTEQEKRIHGK-DLLRVLQTADL 286

Query: 292 NTLVEAMN 299
             L E ++
Sbjct: 287 VNLPELVD 294


>gi|148807526|gb|ABR13566.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 35/172 (20%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++   L    G+  +  TE       ++VL       P+A  +    +   +
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGI--DVPEAKTI-YEYLMLQK 101

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               ++++ +     DGR+ G +   GA  TGR +        +P  S            
Sbjct: 102 -RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------- 148

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                              RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 --------------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|117928371|ref|YP_872922.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648834|gb|ABK52936.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 550

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 18/114 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66
           D ET         G+  YA+   +        +  V +         PQ L + L + ++
Sbjct: 380 DIETT--------GLNWYAD--RICTVQLACGN-RVAVVQLPEGHT-PQRLSQILGDQNI 427

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL----PSALKAVGEAL 116
             + HN+ F+   +       +      CTL L R           L+ V E  
Sbjct: 428 LKIFHNARFDLRFMVYH--WSVIPQNVACTLELVRLLNPRERAGHTLREVLERY 479


>gi|126734481|ref|ZP_01750228.1| exonuclease, putative [Roseobacter sp. CCS2]
 gi|126717347|gb|EBA14211.1| exonuclease, putative [Roseobacter sp. CCS2]
          Length = 203

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 53/186 (28%), Gaps = 35/186 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + L      D    L            L   LE
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCLIQMSGGDGDCHLVQVTPGQTAAPNLCAMLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           N DV  + H   F+   L   F          CT + ++          LK + + +  +
Sbjct: 69  NPDVLKLFHFGRFDIAALLNAFG--ALTAPVYCTKIASKLVRTYTDRHGLKTLLQDMVGI 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                           K +        N  + +        Y   DV    ++ ++ + L
Sbjct: 127 D-------------ISKHQQQSDWGAPNLTDAQLD------YAASDVLYLHQLKEKFDVL 167

Query: 179 SSKEQE 184
            ++E  
Sbjct: 168 LAREHR 173


>gi|148807548|gb|ABR13576.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 35/172 (20%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++   L    G+  +  TE       ++VL       P+A  +    +   +
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGI--DIPEAKTI-YEYLMLQK 101

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               ++++ +     DGR+ G +   GA  TGR +        +P  S            
Sbjct: 102 -RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------- 148

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                              RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 --------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|117530351|ref|YP_851194.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
 gi|117165963|dbj|BAF36271.1| 3'-5' exonuclease [Microcystis phage Ma-LMM01]
          Length = 427

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/392 (12%), Positives = 106/392 (27%), Gaps = 80/392 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVI---LFAFGFDDHPV-ELWDCVHDPVMPQVLKE 59
           L +D+ET    D+   G    A D   +   L    +  + +  + D       P  +++
Sbjct: 32  LAMDYETY--ADVETWGPQASALDPHTLVARLLQINWPGNAIPYVIDLRALDW-PIEIRD 88

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV------------LARSNGLPS 107
              ++ V  V  N+ FE  V +A + +        C +V              R+ G   
Sbjct: 89  IWLDSSVRKVCFNARFEALVTQATWGVW--PDNLYCAMVLFQQIGAATGFKAGRTRGYSY 146

Query: 108 A---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                  +   L       +   EL     +    +    RN             Y    
Sbjct: 147 GSLVRDILDTPLNKELASSDWSGELTPAQLQYAALDVGAPRNSNYTSLLLEA---YALLR 203

Query: 165 VTVTREIFKRLEPL-SSKEQELWYLDQTINDRGYCVDVA----LAHTLNQIVDVERTKLD 219
             +   ++    P     +Q  +     +   G  +++        T    +D  + ++ 
Sbjct: 204 NEL---LYTYEMPQVEEIDQAAFMEIARMEWNGLPINMNVMGSFLSTAQSELDNYKLRMS 260

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLE------------------TGLHLEDLTETTCQR 261
              +     +V  +  + ++   +  +                    + L++L + T + 
Sbjct: 261 AHFDFSVDQVVDWNSGVPQVTLVVPDKITALLNNPTALVSRIQEFLPVKLDNLQQKTLET 320

Query: 262 VLSSN------------------KKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           VL                     + L  Q I       + ++        L   +N    
Sbjct: 321 VLRELDSEDDGDGEDGATSEESIRDLGIQVISDLLRYKKLTKMVSTNWAAL---INPRTG 377

Query: 304 LRGTLQFLGASRTGRWS------GCVFPPQNL 329
                     + TGR S         F  Q +
Sbjct: 378 NVHARYQTIGTSTGRMSSSSSGDTNKFNAQQI 409


>gi|148807495|gb|ABR13552.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 35/172 (20%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++   L    G+  +  TE       ++VL       P+A  + +  +   +
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGI--DIPEAKTI-DEYLMLQK 101

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               ++++ +     DGR+ G +   GA  TGR +        +P  S            
Sbjct: 102 -RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQIPSVSAP---------- 148

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                              RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 --------------YGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|262276702|ref|ZP_06054497.1| ribonuclease D [alpha proteobacterium HIMB114]
 gi|262225133|gb|EEY75590.1| ribonuclease D [alpha proteobacterium HIMB114]
          Length = 204

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 61/204 (29%), Gaps = 36/204 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E      LT            + L       + V       +   P+ LK+ LEN
Sbjct: 24  IAIDGEFSGLNPLTD----------KLHLLQICDGSNFVHFVKFDGEYDAPK-LKKVLEN 72

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
             +  + H    +   +K   N+++       T + ++          LK +        
Sbjct: 73  NSIKKIFHFGRADLGFIKKHLNINVK--NIYDTKIASKICRKFTSSHGLKDLSR------ 124

Query: 121 QKMEEGKELIAR-FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  +LI     K         +   + +        Y   DV    +I + L+ + 
Sbjct: 125 -------DLININLSKEHQTSDWGKKEYSDDQIK------YAANDVLHLHKIKEELDKIL 171

Query: 180 SKEQELWYLDQTINDRGYCVDVAL 203
            +E ++   ++         D+ L
Sbjct: 172 IRENKVELAEKCFQFLETRTDLDL 195


>gi|225022624|ref|ZP_03711816.1| hypothetical protein CORMATOL_02666 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944532|gb|EEG25741.1| hypothetical protein CORMATOL_02666 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 893

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 49/204 (24%), Gaps = 19/204 (9%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW-ICTLVLARSNGLP---SALK 110
           + L + L++T      H++     +L       I +      T + A           LK
Sbjct: 354 KALADYLQSTQ-PKFLHDAKTTYHMLA---GRGITLGGIAHDTALAAYLLNPGQRTYDLK 409

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
              +     + ++ E  +L                                         
Sbjct: 410 TTYQRHLHRTLEITETGQLSLLDITNTNTLITAAAAILELAATLPTK-----------LA 458

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
               LE     E  L  +   +   G  VD+              T+ +    ++     
Sbjct: 459 TINELELYLDLELPLTTILAEMEATGIAVDIPTLEEQLDTFTNLVTQEETAARTIAGDPN 518

Query: 231 SSSRCLEKLKTWLFLETGLHLEDL 254
                 ++L+  LF   GL     
Sbjct: 519 LLLTSPKQLQVVLFETLGLPKTKK 542


>gi|295426488|ref|ZP_06819138.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295063856|gb|EFG54814.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 122

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           + +T+++     P+   E   +++DQ INDRG  +D  L +   +       +  Q  + 
Sbjct: 1   MEITQKL--ERFPVPKNEWGNYWMDQDINDRGIRIDQQLVNNAIRCQKNFHDQYLQVSQK 58

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
           LT     +     +LK WL  + G+    L++     V       T    QV + R   S
Sbjct: 59  LTGLA--NPNPPLQLKDWLHQQ-GVKTNSLSK---AAVTQLLHTTTGTVHQVLSLRQLLS 112

Query: 285 RSAVLKLNTL 294
           +S+V K   +
Sbjct: 113 KSSVKKYQAM 122


>gi|221234528|ref|YP_002516964.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
 gi|220963700|gb|ACL95056.1| DNA polymerase III epsilon-like protein [Caulobacter crescentus
           NA1000]
          Length = 209

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 25/142 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCV---------------ILFAFGFDD-HPVE 43
           M  + IDFET S    + C I   + ED  V                 F   F    P  
Sbjct: 8   MKVIAIDFETASEQRASPCSIGLAWIEDGEVARVEHHYIRPPGNRFAAFNMAFHGIRPEH 67

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           + D    P + + ++  LE     ++AHN+ F+ +V++     +++  P   ++CT+ +A
Sbjct: 68  VADADEWPDVLERIRPELE--GALVLAHNASFDISVIRRTCEHYDVPAPGFDYLCTVQVA 125

Query: 101 RSN---GLPSALKAVGEALKLS 119
           RS         L  V   L + 
Sbjct: 126 RSVWPELPSHKLNVVCGHLGVD 147


>gi|83591355|ref|YP_425107.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170]
 gi|83574269|gb|ABC20820.1| 3'-5' exonuclease [Rhodospirillum rubrum ATCC 11170]
          Length = 206

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 17/164 (10%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+  + +   + +      D+   +     D   P VL   L +
Sbjct: 24  IAVDTET--------MGLNPHRD--RLCVVQLSGGDNIAHVVHLNRDLQAP-VLASLLGD 72

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEA-LKLS 119
             V  + H   F+   +     L +      CT + ++          LKA+ +  L + 
Sbjct: 73  PSVLKIMHFGRFDIASI--HHGLGVLCEPVYCTKIASKLCRTNTDSHGLKALCKDLLGVD 130

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
             K ++  +  A     E            H    RL G   + 
Sbjct: 131 LSKHQQTSDWGAESLSPEQLTYAASDVLYLHALKARLDGLLARE 174


>gi|16125770|ref|NP_420334.1| exonuclease [Caulobacter crescentus CB15]
 gi|13422904|gb|AAK23502.1| exonuclease [Caulobacter crescentus CB15]
          Length = 202

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 25/142 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCV---------------ILFAFGFDD-HPVE 43
           M  + IDFET S    + C I   + ED  V                 F   F    P  
Sbjct: 1   MKVIAIDFETASEQRASPCSIGLAWIEDGEVARVEHHYIRPPGNRFAAFNMAFHGIRPEH 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           + D    P + + ++  LE     ++AHN+ F+ +V++     +++  P   ++CT+ +A
Sbjct: 61  VADADEWPDVLERIRPELE--GALVLAHNASFDISVIRRTCEHYDVPAPGFDYLCTVQVA 118

Query: 101 RSN---GLPSALKAVGEALKLS 119
           RS         L  V   L + 
Sbjct: 119 RSVWPELPSHKLNVVCGHLGVD 140


>gi|13473785|ref|NP_105353.1| DNA polymerase III subunit epsilon [Mesorhizobium loti MAFF303099]
 gi|14024536|dbj|BAB51139.1| DNA polymerase III epsilon chain [Mesorhizobium loti MAFF303099]
          Length = 240

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 49/164 (29%), Gaps = 42/164 (25%)

Query: 1   MATLFIDFETRSPID--------------------------LTKCGICKYAEDVCVILFA 34
           M  +  D ET                               +   G   + E   V   +
Sbjct: 1   MREIIFDTETTGLDSRDDRVIELGGVELVNRFPTGRTFHHYINPQGRAIHEEAQAVHGIS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI-VAHNSYFERTVLKACFNL----DIP 89
                      D    P   ++ +E L  TD    VAHN+ F+   L   F       + 
Sbjct: 61  AA---------DLAGKPTFAEIAEEWLTFTDGAKLVAHNATFDIGFLNVEFGRLGHPVVD 111

Query: 90  IHRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
             R + TL LAR      P++L A+     + + K  +   L+ 
Sbjct: 112 PGRVVDTLALARRKHPMGPNSLDALCRRYGIDNTKRTKHGALLD 155


>gi|229472337|gb|ACQ72683.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 64/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+  A                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIRLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|78485923|ref|YP_391848.1| 3'-5' exonuclease [Thiomicrospira crunogena XCL-2]
 gi|78364209|gb|ABB42174.1| ribonuclease D [Thiomicrospira crunogena XCL-2]
          Length = 385

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 72/285 (25%), Gaps = 35/285 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           + +D E              Y     ++ L      D    + D +    +   L   + 
Sbjct: 25  IALDTE--------FVRTDTY---FSILSLIQIQTHDGQAAIIDPLAIEDLTA-LWSIIS 72

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N +V  V H++  +  VL               T +          L  +   +K     
Sbjct: 73  NPNVRKVFHSARQDIEVLYQVSGQ--MPISIYDTQIACLFL-QHGDLAGLARVVK----- 124

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                EL     K +T      R             EY   DV     ++++L+   +++
Sbjct: 125 ----AELNFTLEKDQTRTNWQQRPLT------DKQLEYAINDVRYLAPLYEKLQAELTEQ 174

Query: 183 QELWY---LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           Q+          +N+  Y +D+  A    +       K       L       +    K 
Sbjct: 175 QQAALEEDFQALLNEDLYKIDIKAAGKKIKAAKKLSRKNKAIAYKLAEWREQFAIENNKP 234

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKK-LTPQAIQVFNNRMRA 283
           K W+  +  L             L                  +  
Sbjct: 235 KRWVMSDEVLVAIAKRPPKTPEALYKVPHIKASSVKNYGAEWIEL 279


>gi|229472253|gb|ACQ72641.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 62/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    E             
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 134 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +    M      +   +     +  VHDE
Sbjct: 158 QGSAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|254476761|ref|ZP_05090147.1| 3'-5' exonuclease [Ruegeria sp. R11]
 gi|214031004|gb|EEB71839.1| 3'-5' exonuclease [Ruegeria sp. R11]
          Length = 204

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 48/182 (26%), Gaps = 35/182 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    +            L   LE
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVIQMSGGDGNAHIVQVAKGQTEAPNLCRMLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           + +V  + H   F+   +   F          CT + +R          LK + + L  +
Sbjct: 69  DPNVLKLFHFGRFDIAAMYHAFG--ALAAPVYCTKIASRLVRTYTDRHGLKNLTQELIGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                    + +        Y   DV     +   L+  
Sbjct: 127 DISKQQQMSDW-------------GAAQLSDAQLD------YAASDVLHLHRLRAALDKR 167

Query: 179 SS 180
             
Sbjct: 168 LD 169


>gi|148807603|gb|ABR13601.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAEMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+ A    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMPAHYMRDER 186


>gi|241668633|ref|ZP_04756211.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877166|ref|ZP_05249876.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843187|gb|EET21601.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 364

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 78/286 (27%), Gaps = 52/286 (18%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D      L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQIATEN-EIFLIDTLEDLDF-SKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K+  E+T++  + H++  +  ++K  F  D  ++    T + A   G             
Sbjct: 64  KDIFEDTNIQKIIHSATNDIPIIKRFF--DCEVNNIFDTQLAASFLG------------- 108

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +Q     K L+      E  +     +      + + F +Y   DV    EI   LE 
Sbjct: 109 --TQSQISLKALLKDILDIEMEKESQFSDWRKRPLSQKQF-DYALKDVEHLIEIKYHLES 165

Query: 178 LS------SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                       E     Q          V   H     +     K  +    +     S
Sbjct: 166 KLNQTDYKQYFYEELLDIQKTEFNT----VENIHNKIGNIQKFSEKTQKNAILVAQWRES 221

Query: 232 SSRCLEKLKTWLFLE--TGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
            ++       ++F             ++         KKL P   +
Sbjct: 222 MAQQKNIPVRFIFDNKILYAIAHKNPKSLNSFDTEELKKLKPWIKK 267


>gi|126738420|ref|ZP_01754125.1| exonuclease, putative [Roseobacter sp. SK209-2-6]
 gi|126720219|gb|EBA16925.1| exonuclease, putative [Roseobacter sp. SK209-2-6]
          Length = 204

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 47/182 (25%), Gaps = 35/182 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    +            L   LE
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVIQMSDGDGNAHIIQVAKGQSEAPNLCRLLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKL 118
           + +   + H   F+   +   F          CT + +R          LK +  E L +
Sbjct: 69  DPETLKLFHFGRFDIAAMYNAFG--ALSAPVYCTKIASRLVRTYTDRHGLKNLTQELLGI 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                              +Y   DV    ++ K L   
Sbjct: 127 DISKQQQMSDWG-------------------AEILTDAQLDYAASDVLHLHKLRKALNKR 167

Query: 179 SS 180
             
Sbjct: 168 LE 169


>gi|114568663|ref|YP_755343.1| 3'-5' exonuclease [Maricaulis maris MCS10]
 gi|114339125|gb|ABI64405.1| 3'-5' exonuclease [Maricaulis maris MCS10]
          Length = 204

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 47/182 (25%), Gaps = 35/182 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D ET                   + +      D    +            LK  L 
Sbjct: 19  IVAVDTETLGLSLTRDM----------LCVVQLSAGDGDAHVVQMNRADYDCPNLKRVLA 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           +  V  + H + F+  ++     + +      CT + ++          LK V   L   
Sbjct: 69  DPAVEKILHFARFDVAMVDKYLGVTMAP--VFCTKIASKLVRTYTDRHGLKDVTRELVGA 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                       E      +Y   DV    ++ ++L  +
Sbjct: 127 EMNKQQQSSDWG-------------------ADELSPAQLDYAASDVLHLHKLREKLGMM 167

Query: 179 SS 180
             
Sbjct: 168 LE 169


>gi|294084811|ref|YP_003551571.1| 3'- 5' exonuclease family protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664386|gb|ADE39487.1| 3'- 5' exonuclease family protein, putative [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 203

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 51/193 (26%), Gaps = 33/193 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET          +    +   + L      D    L           VL   L 
Sbjct: 19  IVAIDTET----------MGLKTQRDRLCLVQLSSGDGNAHLVQIAQPAKPSPVLAALLA 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           +  VT + H + F+   L     +        CT + ++          LK +   L   
Sbjct: 69  DPAVTKLFHFARFDLAALIHY--IGAVEGDIYCTKIASKLARTYTDRHGLKELCREL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +             ++       Y  GDV     I ++L  + 
Sbjct: 124 ---------LQIDISKQQQSSDWGAETLTIDQQ------NYAAGDVLYLHAIREKLSYML 168

Query: 180 SKEQELWYLDQTI 192
            +E  +   +   
Sbjct: 169 ERENRMALANACF 181


>gi|289207511|ref|YP_003459577.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
 gi|288943142|gb|ADC70841.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
          Length = 392

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 66/260 (25%), Gaps = 36/260 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E      L +           + L      D    +     D    Q L    
Sbjct: 24  DWIALDTE-----FLREKTYY-----PQLCLVQAATLDQLACIDPLRLD---IQQLAPLF 70

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +T V H +  +  +L               T + A   G        GE +  ++ 
Sbjct: 71  RDPGITKVFHAASQDMELLYRELGFV--PSPVFDTQIAASMLGY-------GEQVGYANL 121

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L     K +T      R              Y   DV     +F RL      
Sbjct: 122 VKTV---LERDLDKSQTRTDWSRRPLS------AEQIRYAADDVRHLATLFNRLLHELDT 172

Query: 182 EQELWYLDQTINDRGYCV----DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
              + +L   +           D   +      V   + K    L+ +      +++   
Sbjct: 173 HDRMHWLRPEMEALSNPALYEPDPEQSWQRVSGVKRLKPKERGVLKCVAAWRERTAQSSN 232

Query: 238 KLKTW-LFLETGLHLEDLTE 256
           + + W L  +  L +   T 
Sbjct: 233 RPRRWVLSDDLLLDIARRTP 252


>gi|37626128|gb|AAQ96504.1| hypothetical protein [Vibrio phage VP16T]
          Length = 62

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAKGLPLKAEGYESKRY 673
           M      GY +V+  HDE++ E P+    +   +  LMT    W    P++A G++  RY
Sbjct: 1   MKKCENNGYPVVMHTHDELIAEVPEDF-GSVEEMAALMTEREPWRAWWPIRAAGWQDDRY 59

Query: 674 RK 675
           +K
Sbjct: 60  QK 61


>gi|254292595|ref|YP_003058618.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814]
 gi|254041126|gb|ACT57921.1| 3'-5' exonuclease [Hirschia baltica ATCC 49814]
          Length = 204

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 57/206 (27%), Gaps = 35/206 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D E          G+  + +   + +           +            LK  + 
Sbjct: 19  ILAVDTE--------AMGLEFHRD--QLCVVQLSDGTGDEHVVRLDRKTFDCPNLKALMS 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           +T V  + H + F+  ++K    ++       CT + ++          LK V   L   
Sbjct: 69  DTKVLKIFHFARFDVAMMKKWLGIECAP--IFCTKIASKLARTYTDRHGLKDVSRELVGA 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                               Y   DV    EI ++L  +
Sbjct: 127 DMSKAQQSSDWG-------------------ADSLSEAQLAYAASDVLYLHEIREKLILM 167

Query: 179 SSKEQELWYLDQTINDRGYCVDVALA 204
             +E  +       +      D+ LA
Sbjct: 168 LEREGRMELAQACFDFLPKRADLDLA 193


>gi|238695626|ref|YP_002922653.1| P39 [Xanthomonas phage phiL7]
 gi|190343993|gb|ACE75779.1| P39 [Xanthomonas phage phiL7]
          Length = 282

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 29/191 (15%)

Query: 2   ATLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ 55
             L ID ET         +     G     +D  V+ F   +   P  ++D + +   P 
Sbjct: 25  KILHIDIETSQMIVWAWGLHKQFVGHEDIIQDWNVLSFCAKWQGVPTVIYDDLREQQNPT 84

Query: 56  V-------LKEALENTDVTIVAHNS-YFERTVLKACFNLD----IPIHRWICTLVLARSN 103
                   L + L   DV +VAHN   F+   +++    +    IP  R + TL+ +R  
Sbjct: 85  KDRRLCVALAKLLTEADV-VVAHNGKKFDLKKIRSRMAHNKLKPIPDTRIVDTLLESRKV 143

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYC 161
              ++        KL+      G++ + +   G          +    +  AW    +Y 
Sbjct: 144 FGHTS-------HKLAYLTTHFGEDGLRKLDHG-KFAGKALWRECQTGNLAAWDEMRKYN 195

Query: 162 KGDVTVTREIF 172
             DV     ++
Sbjct: 196 IVDVLAMESMY 206


>gi|148238801|ref|YP_001224188.1| ribonuclease D [Synechococcus sp. WH 7803]
 gi|147847340|emb|CAK22891.1| Ribonuclease D [Synechococcus sp. WH 7803]
          Length = 214

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 46/171 (26%), Gaps = 24/171 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E          G+    +   + L     D   V              LK  +E 
Sbjct: 32  LAVDTE--------AMGLIHGRD--RLCLVQICDDKDQVACIRIALGQSEAPRLKALMEA 81

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             +  V H + F+   L     L I ++   CT V +R          LK +   L  + 
Sbjct: 82  ATIEKVFHFARFDVAALA--TGLGIRVNPIFCTKVGSRLARTYTPRHGLKDLVMELVGVE 139

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
             K  +  +           + L D            +    +  + V   
Sbjct: 140 LDKQAQSSDW-------GRVDELTDVQLAYAAND-ARYLLPARRQLEVMLR 182


>gi|229472189|gb|ACQ72609.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472331|gb|ACQ72680.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472419|gb|ACQ72724.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472601|gb|ACQ72815.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 63/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    E             
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 134 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +  + M      +   +     +  VHDE
Sbjct: 158 QGSAGCVAKQWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|50306309|ref|XP_453127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642261|emb|CAH00223.1| KLLA0D01309p [Kluyveromyces lactis]
          Length = 744

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 54/200 (27%), Gaps = 38/200 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            L ID E              Y     ++       D     + D +       +L +  
Sbjct: 234 ELAIDLE-----------HHDYRSYYGIVCLMQIS-DREHDWIVDTIALREELYILNDIF 281

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLS 119
            + +VT V H ++ +   L+    L I       T   +R  G P  +L  + E      
Sbjct: 282 TDPNVTKVLHGAFMDIIWLQRDLGLYI--VGLFDTYHASRMLGFPKHSLAYLLERFANFK 339

Query: 120 SQKMEEGKEL-IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           + K  +  +  I    K                        Y + D      IF +L   
Sbjct: 340 TSKKYQLADWRIRPLTKP--------------------MLAYARADTHFLLNIFDKLRNS 379

Query: 179 SSKEQELWYLDQTINDRGYC 198
             ++ ++  +          
Sbjct: 380 LLEQNKMSDVLHESRKVAKR 399


>gi|229472235|gb|ACQ72632.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472491|gb|ACQ72760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|229472231|gb|ACQ72630.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGGYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+  A                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              + +++A+      + +L   +    E               
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|229472557|gb|ACQ72793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADR 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIKAYQLAFVHDE 192


>gi|291335762|gb|ADD95365.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C243]
          Length = 237

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 45/181 (24%)

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
              +N   + +  +GR+        ++ T R +        +P                 
Sbjct: 52  SEGVNAWNKLVTGEGRIHHHCS--VSTNTFRCAHRKPNLAQVP----------------- 92

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETG 405
                        S+  R    AS G  +V ADL+GIE R+LA   G  +  +       
Sbjct: 93  ------------ASEEFRELFTASPGMVMVGADLSGIELRMLAHYLGRYDGGRYADILLN 140

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +D++     +             R   K +  A  Y  G +      ++   +L      
Sbjct: 141 DDIHQVNADKI---------GITRRQVKTVTYAFLYGAGNEKL---GTSYDNSLQPKEAK 188

Query: 466 V 466
            
Sbjct: 189 K 189


>gi|229472561|gb|ACQ72795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 61/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+                      
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKVATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    E             
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 134 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +    M      +   +     +  VHDE
Sbjct: 158 QGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|117530349|ref|YP_851192.1| DNA polymerase [Microcystis phage Ma-LMM01]
 gi|117165961|dbj|BAF36269.1| DNA polymerase [Microcystis phage Ma-LMM01]
          Length = 320

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/283 (10%), Positives = 65/283 (22%), Gaps = 54/283 (19%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA-Q 423
           R  + A  G   V  D +  E R+    + +     A      L    +     +  + +
Sbjct: 9   RFALQAPPGYAWVSVDFSSQELRLAGAFSKD----SAITEIYVLEDKYHRGIRPLPLSPE 64

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                        +A          + +         T +      S   +     NF  
Sbjct: 65  GLTYTDPKVDQHLVA-----STFLNKDIERRMIHEPWTVSADDPVISPWRKKGKIMNFKV 119

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
               +    A +         R+ K +      +                          
Sbjct: 120 IYGGSASSLAADLNCDDKEAGRLLKQYFTGFHGLYTWIE--------------------- 158

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
                +          +    GR +   +         +TTR+         K   +++Q
Sbjct: 159 -----ITGSLCSRTRWVRSAMGRFINVNEDNAKGIAGKSTTRR---------KAVNSVIQ 204

Query: 604 AVSRDILAEGMMNAT---------KAGYDIVLTVHDEIVCETP 637
           +   ++L   +             +    I+   HDEI    P
Sbjct: 205 SSGSEMLKISLPRVRQAIETIDAGERRASIINATHDEINLLVP 247


>gi|153000417|ref|YP_001366098.1| ribonuclease D [Shewanella baltica OS185]
 gi|160875014|ref|YP_001554330.1| ribonuclease D [Shewanella baltica OS195]
 gi|217973594|ref|YP_002358345.1| ribonuclease D [Shewanella baltica OS223]
 gi|151365035|gb|ABS08035.1| ribonuclease D [Shewanella baltica OS185]
 gi|160860536|gb|ABX49070.1| ribonuclease D [Shewanella baltica OS195]
 gi|217498729|gb|ACK46922.1| ribonuclease D [Shewanella baltica OS223]
 gi|315267246|gb|ADT94099.1| ribonuclease D [Shewanella baltica OS678]
          Length = 369

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 84/308 (27%), Gaps = 47/308 (15%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L +D E     T                   + L    +D   + L D V  P +   
Sbjct: 24  KILVLDTEFVRTRTYY---------------AKLGLIQ-AYDGKTLALIDPVALPDL-AQ 66

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               L + ++  + H+   +  V                + + A   G+           
Sbjct: 67  FWALLSDPNIIKLVHSCSEDLEVFAHYG--KCQPTPLFDSQIAASLCGMGH--------- 115

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +   K+ E        C GE  +    R     R        Y   DV    +++ +LE
Sbjct: 116 GVGYAKLVE-------TCLGEVIDKGESRTDWIRRPLTEAQLSYAANDVLYLYQLYPQLE 168

Query: 177 PLSSKEQELWYLDQTINDR--GYCVDVALAHTLNQIVD--VERTKLDQELESLTYGLVSS 232
              S +  L +L +       G   D  L     ++ +           L+ L    +  
Sbjct: 169 AKLSAQGRLAWLYEEGERMTQGRLADPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRLEK 228

Query: 233 SRCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +   +    ++  + GL  L      +    L     LT Q  ++              L
Sbjct: 229 ALVRDLALGFVVKDHGLIALAKKQPKSSAD-LFKLNDLTEQEKRIHGK-DLLRVLQTADL 286

Query: 292 NTLVEAMN 299
             L E ++
Sbjct: 287 VNLPELVD 294


>gi|295691424|ref|YP_003595117.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756]
 gi|295433327|gb|ADG12499.1| 3'-5' exonuclease [Caulobacter segnis ATCC 21756]
          Length = 205

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 47/181 (25%), Gaps = 33/181 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+ +   D   +       D    +            LK  L 
Sbjct: 20  IIAIDSET--------MGL-RLGRDPLCV-VQLSSGDGDAHVVRLSRPDYDCPNLKALLT 69

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           +  +  + H   F+  + +    +        CT + ++          LK V   L   
Sbjct: 70  DPAILKLFHFGRFDIAMFQLHLGVVTAP--VYCTKIASKLARTYTDRHGLKDVTREL--- 124

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +        +    + A      Y   DV     + ++L  + 
Sbjct: 125 ---------LGVELSKAQQSSDWGSASLSADQVA------YAASDVLHLHGLRQKLNAML 169

Query: 180 S 180
            
Sbjct: 170 E 170


>gi|223986450|ref|ZP_03636454.1| hypothetical protein HOLDEFILI_03766 [Holdemania filiformis DSM
           12042]
 gi|223961602|gb|EEF66110.1| hypothetical protein HOLDEFILI_03766 [Holdemania filiformis DSM
           12042]
          Length = 171

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 4   LFIDFETRSPIDLTK-CGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQV---- 56
           +  DFET S             A  + ++  +F   +        +H       +     
Sbjct: 23  VAFDFETTSDAAYRTEPKAALDAHKLHIVSVSFSTTEGDASNVPLLHRIGENCEKQDELW 82

Query: 57  --LK-EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
             LK E  EN ++  +AHN  FE   L    N+ + +     T+  ++ 
Sbjct: 83  TFLKTEVFENPNIVKIAHNLSFEAMFL-YAKNIIVQM-PCYDTIAASQL 129


>gi|319426180|gb|ADV54254.1| ribonuclease D [Shewanella putrefaciens 200]
          Length = 369

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 75/273 (27%), Gaps = 45/273 (16%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L +D E     T                   + L    +D   + L D V  P +   
Sbjct: 24  KILVLDTEFVRTRTYY---------------AKLGLIQ-AYDGKTLALIDPVALPDL-AK 66

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L   L N ++  + H+   +  V                + + A   G+           
Sbjct: 67  LWALLANPNIIKLVHSCSEDLEVFAHYG--QCQPVPLFDSQIAASLCGMGH--------- 115

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +   K+ E        C GE  +    R     R        Y   DV    +++ +LE
Sbjct: 116 GVGYAKLVE-------TCLGEVIDKGESRTDWIRRPLTEAQLAYAANDVLYLHQLYPQLE 168

Query: 177 PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD---VERTKLDQELESLTYGLVSS 232
               ++ +  W  ++ +      +D     T    V             L+ L    +  
Sbjct: 169 AKLVAQGRLNWLYEEGVRMTEGRLDTPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRLEK 228

Query: 233 SRCLEKLKTWLFLETGL-HLEDLTETTCQRVLS 264
           +   +    ++  + GL  L      +   +L 
Sbjct: 229 ALARDLALGFVIKDHGLIALAKKQPKSMTELLK 261


>gi|156844457|ref|XP_001645291.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115951|gb|EDO17433.1| hypothetical protein Kpol_1037p29 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 746

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 50/197 (25%), Gaps = 32/197 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D E              Y     ++             L D +       +L E  
Sbjct: 233 EIAVDLE-----------HHDYRSYYGIVCLMQISTRKED-FLVDTLALRDELHILNEVF 280

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            + ++  V H ++ +   L+      + +     T   +R+ G P        +L    +
Sbjct: 281 ADPNILKVLHGAFMDIIWLQRDLG--LYVVSLFDTYHASRALGFPRH------SLAYLLE 332

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    K              L                 Y + D      I+ ++     +
Sbjct: 333 KYANFKTSKKYQLADWRVRPLSK-----------PMHAYARADTHFLLNIYDQIRNQLIR 381

Query: 182 EQELWYLDQTINDRGYC 198
           E +L  +     +    
Sbjct: 382 ENKLAEVLFESRNVAKR 398


>gi|229472237|gb|ACQ72633.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472591|gb|ACQ72810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIKAYQLAFVHDE 192


>gi|148807579|gb|ABR13590.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAEMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+  R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLXLRMLAHYMRDER 186


>gi|83944937|ref|ZP_00957303.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633]
 gi|83851719|gb|EAP89574.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633]
          Length = 204

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 56/206 (27%), Gaps = 39/206 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-DCVHDPVMPQVLKEA 60
             + ID ET+    L + G+C         L      D    +          P  LK  
Sbjct: 18  KRVAIDTETQGL-SLVRDGLC---------LVQLSAGDGEAHIVQPDRATYDCP-NLKAL 66

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALK 117
           L +T V  + H + F+  +++    + +      CT + ++          LK V     
Sbjct: 67  LADTGVEKLLHFARFDLAIIERDLGVTMTP--VFCTKIASKLVRTYTDRHGLKDVCRE-- 122

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLE 176
                   G EL               ++     +        Y   DV     I   L 
Sbjct: 123 ------IAGVEL-----------SKQQQSSDWAAQDLSEAQLNYAASDVLYLHAIADGLT 165

Query: 177 PLSSK--EQELWYLDQTINDRGYCVD 200
            +  +    E+             +D
Sbjct: 166 AMLEREGRMEMARACFDFLPSRARLD 191


>gi|229472357|gb|ACQ72693.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 64/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+  A                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|254510165|ref|ZP_05122232.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11]
 gi|221533876|gb|EEE36864.1| 3'-5' exonuclease [Rhodobacteraceae bacterium KLH11]
          Length = 204

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 44/172 (25%), Gaps = 33/172 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    +            L   LE
Sbjct: 19  IVAIDCET--------MGLNPHRD--RLCVIQMSGGDGDCHIVQVEKGQASAPNLCAMLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           + ++  + H   F+   +   F          CT + +R          LK + + L   
Sbjct: 69  DPNILKLFHFGRFDIAAMYHAFG--ALAAPVYCTKIASRLVRTYTDRHGLKNLCQEL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                    L     K +           + +        Y   DV     +
Sbjct: 124 ---------LGVDISKQQQMSDWGAETLTDAQLD------YAASDVLYLHRL 160


>gi|85705765|ref|ZP_01036862.1| exonuclease, putative [Roseovarius sp. 217]
 gi|85669755|gb|EAQ24619.1| exonuclease, putative [Roseovarius sp. 217]
          Length = 203

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 44/169 (26%), Gaps = 27/169 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L            L+  L 
Sbjct: 19  VVAIDCET--------MGLHPHRD--RLCVVQLSGGDGHAHLVQVAKGQTSAPNLERLLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           + +V  + H   F+   +   F          CT + ++            +   L   K
Sbjct: 69  DPNVLKLFHFGRFDIAAMHNAFG--ALAAPVYCTKIASKLIR------TYTDRHGL---K 117

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
               + L     K +        +  + +        Y   DV     +
Sbjct: 118 YLLQELLNIDISKQQQSSDWGAESLTSAQLD------YAASDVLYLHRL 160


>gi|148807500|gb|ABR13554.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807556|gb|ABR13580.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 35/172 (20%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++   L    G+  +  TE       ++VL       P+A  +    +   +
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGI--DVPEAKTI-YEYLMLQK 101

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               ++++ +     DGR+ G +   GA  TGR +        +P  S            
Sbjct: 102 -RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP---------- 148

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                              RS     EG KLV  D +G+E R+LA    ++ 
Sbjct: 149 --------------YGKECRSFWCVPEGHKLVGIDASGLELRMLAHYMRDER 186


>gi|167821772|ref|ZP_02453452.1| 34L [Burkholderia pseudomallei 91]
          Length = 263

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 36/204 (17%)

Query: 2   ATLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGFDDHP-VELWDC------V 48
             L +D ET         +      + +   + C++ F   + D P V   D        
Sbjct: 6   RILSLDIETSPILGYVWSLWKQNVSLNQIHSEWCILSFCAKWLDDPRVIYHDTSAQRNKE 65

Query: 49  HDPVMPQVLKEALENTDVTIVAHNS-YFE-RTVLKACFNLDIP---IHRWICTLVLARSN 103
            D  + + L + L +    +VA N   F+ R +      L +      R + T++ AR  
Sbjct: 66  DDRRIVRKLWKLL-DQADIVVAQNGVKFDVRKINARFILLGMQPPSPFRVVDTMLEAR-- 122

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL-----YDRNKPNHREAWRLFG 158
                     +    +S K+E     + +  K + H        +      +  A     
Sbjct: 123 ----------KHFGFTSNKLEWLTAKLCKTHKKQKHAQFPGFELWREYLAGNPAAAAEMQ 172

Query: 159 EYCKGDVTVTREIFKRLEPLSSKE 182
            Y   DV    E++  L P  +  
Sbjct: 173 AYNTDDVLSLEELYLVLRPWITGH 196


>gi|124026737|ref|YP_001015852.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A]
 gi|123961805|gb|ABM76588.1| putative ribonuclease D [Prochlorococcus marinus str. NATL1A]
          Length = 214

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 63/206 (30%), Gaps = 28/206 (13%)

Query: 6   IDFET----RSP----IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
           ID ET    RS     +D    G+    +   + L     +   V       +      L
Sbjct: 18  IDSETEIALRSSSALAVDTEAMGLIHGRD--RLCLIQICDEFDNVICIRIERNQHSAPHL 75

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K  LEN  +  V H + F+   L +  N+++      CT + ++  G   +         
Sbjct: 76  KSILENKTIEKVFHFARFDVAALASNLNINVNP--IFCTKIASK-IGRTYS-----PRHG 127

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L        KE++      E  +     +     +  +    Y   DV        +LE 
Sbjct: 128 L--------KEVVLETVGVELDKQAQSSDWGKVGDLTQKQLIYAANDVRYLLGAKHKLEE 179

Query: 178 LSSKEQELWYLDQTINDRGYCVDVAL 203
           +    +E  +       +   V   L
Sbjct: 180 MLK--REERWGLAQKCFQCVPVLSEL 203


>gi|229472593|gb|ACQ72811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 64/275 (23%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 9   EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 61

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 62  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 102

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    E             
Sbjct: 103 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES------------ 131

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 132 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 155

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +  + M      +N  +     +  VHDE
Sbjct: 156 QGSAGCVAKQWMVHTHNAINLNQIEAYQLAFVHDE 190


>gi|262193925|ref|YP_003265134.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
 gi|262077272|gb|ACY13241.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
          Length = 925

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 51/179 (28%), Gaps = 41/179 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           +D ET                D  + L      ++ V + D      +   + E L +  
Sbjct: 780 LDVETT-------------LFDRALCLVQLAAPEYTV-VIDARAVDDL-GPVSELLASRA 824

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSS 120
           V  + HN+ FER+V +    L + I     TL ++R            L AV        
Sbjct: 825 VVKIIHNAQFERSVFRK---LGMDIENVFDTLKVSRRLRGRKREGGHGLGAVCAR----- 876

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  EL     K E       R     +        Y   D  V   + +R     
Sbjct: 877 -------ELGRELDKHEQRSDWTQRPLTQRQLD------YAALDAEVLLALHERFTREL 922


>gi|209966458|ref|YP_002299373.1| ribonuclease D, putative [Rhodospirillum centenum SW]
 gi|209959924|gb|ACJ00561.1| ribonuclease D, putative [Rhodospirillum centenum SW]
          Length = 204

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 48/181 (26%), Gaps = 34/181 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEAL 61
            + ID ET              A D  + L      D    L             LK  L
Sbjct: 19  VVAIDTETMGLNP---------ARD-RLCLVQLSAGDGRCHLVQFRQGAGYDAPNLKRML 68

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEALKL 118
            +     + H + F+  V++A     +      CT V ++          LK +   L  
Sbjct: 69  TDPGTLKLFHFARFDIAVMQAYLG--VLTGPVYCTKVASKLTRTFTDRHGLKDLCRDL-- 124

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L     K +              E      +Y   DV    EI  RL+ +
Sbjct: 125 ----------LGVELSKQQQSSDWG------ADELTAEQLKYAASDVLHLHEIKARLDGM 168

Query: 179 S 179
            
Sbjct: 169 L 169


>gi|57239422|ref|YP_180558.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|58579394|ref|YP_197606.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
 gi|57161501|emb|CAH58427.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
 gi|58418020|emb|CAI27224.1| Ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
          Length = 389

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 36/196 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E      +  C          + L    + +    + D + D +   VL+   
Sbjct: 25  KFIAVDTE-----FIRNCNEYY----PRLSLIQIAWSEGK-CVIDVLADDIDLSVLESIF 74

Query: 62  ENTDVTIVAHNSYFER-TVLKACFNLDIPIHRWICTLVL----ARSNGLPSALKAVGEAL 116
            N ++  + H+   +   +L     +    +    + +     A  +      K V + L
Sbjct: 75  YNKEIVKIFHDCKQDIDALLTKFPRI---PYPIFDSQIAAMFCAYYDNAVGYSKLVAQFL 131

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +S  K+                      N      +     +Y   DV    E+++ L 
Sbjct: 132 DVSLDKLTL-----------------KRSNWLMRPLSDDK-IQYALDDVVYLYELYQVLY 173

Query: 177 PLSSKEQELWYLDQTI 192
                 + L +  + +
Sbjct: 174 DNLISSKRLLWFLEEM 189


>gi|99079868|ref|YP_612022.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
 gi|99036148|gb|ABF62760.1| 3'-5' exonuclease [Ruegeria sp. TM1040]
          Length = 204

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 44/180 (24%), Gaps = 33/180 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L            L   L 
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVVQMSSGDGDAHLVQIAKGQTDAPNLTAMLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           N DV  + H   F+   L   F          CT + +R          LK + + L   
Sbjct: 69  NPDVLKLFHYGRFDIAALYHRFG--ALAAPVYCTKIASRLVRTYTDRHGLKNLTQDL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +             +        Y   DV     +   L+   
Sbjct: 124 ---------LGQDISKQQQMSDWGAETLTRAQMD------YAASDVLHLHRLRDALDQRL 168


>gi|238801836|ref|YP_002922886.1| putative DNA polymerase [Enterobacteria phage WV8]
 gi|216263049|gb|ACJ71917.1| putative DNA polymerase [Enterobacteria phage WV8]
          Length = 906

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/438 (13%), Positives = 118/438 (26%), Gaps = 59/438 (13%)

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             +  +  ++K    L          LTE++   +     +   +   + + R     S 
Sbjct: 480 QYIEHNWSVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKYYTLMHRRRTIENSK 539

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             +    +  +  DGRL       GA   G  +G +                        
Sbjct: 540 DDE-KGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ---------------------- 571

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
             I + P    +  + +R+  I  EG  +V  D+   +  +L    G++   KA   G++
Sbjct: 572 YGIVNVPSGAAVYGEPMRAVWICEEGTNVVSVDMNSAQLVLLCNFMGDKDFTKAVTQGKE 631

Query: 408 LYVTTYARSFNV------APAQVTKDQRAIGKVME-LALGYQGGAKA------FQKMAST 454
                                    D+         L + Y G          F      
Sbjct: 632 EIEFIRQEDGRYYCKHFDEYLNPEIDKYLRYDSENDLYVVYSGTDAHTLNSIYFSLNDEQ 691

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLF---IGTACERVKKAWR 511
             L           +   +  + A+N    +     +                  K+ + 
Sbjct: 692 DILTCRATQDENLLHEISKGRKKAKNGIYALLFGAGDEKFAKTIKAATTQEGALTKQTYF 751

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
            +  ++ +L ++L   ++ T +  + +  +        ++K     L    P    L Y 
Sbjct: 752 IRLPKIKKLLDDLEADYKATKKALEEVFGKTAAISKGGFVKVAGAWLWCKSPHKL-LNYL 810

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
            +G+     N       R     G +  N  Q                 G  ++   HDE
Sbjct: 811 LMGSEAQIQNEAINLACRRMIDEGLMKLNGRQ--------------PAIGARLLCAYHDE 856

Query: 632 IVCETPDTDEFNASMLYH 649
              E P++       +  
Sbjct: 857 TSWECPESMTAEVKAVTD 874


>gi|238484333|ref|XP_002373405.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
           NRRL3357]
 gi|220701455|gb|EED57793.1| exosome complex exonuclease Rrp6, putative [Aspergillus flavus
           NRRL3357]
          Length = 434

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 47/194 (24%), Gaps = 31/194 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           +  Y     V L      D    +          Q+L E  
Sbjct: 240 KEIAIDLE--------HHDVHSY--QGLVSLMQISTRDKDWVVDTLKPWREELQMLNEVF 289

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H S  +   L+      + +     T   A +   P        +LK   Q
Sbjct: 290 ADPSILKVFHGSSMDIIWLQRDLG--LYVVGMFDTYHAACALNYPK------RSLKFLLQ 341

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-- 179
           K    +              +                +Y + D      IF  L      
Sbjct: 342 KFVNFEADKRYQMADWRIRPI-----------PEGMFDYARSDTHYLLHIFDHLRNELIE 390

Query: 180 SKEQELWYLDQTIN 193
           +   E   +D  + 
Sbjct: 391 NSTPENNLIDYVLE 404


>gi|83950822|ref|ZP_00959555.1| exonuclease, putative [Roseovarius nubinhibens ISM]
 gi|83838721|gb|EAP78017.1| exonuclease, putative [Roseovarius nubinhibens ISM]
          Length = 203

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 44/173 (25%), Gaps = 35/173 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L            L   LE
Sbjct: 19  IVAIDCET--------MGLLPHRD--RLCVVQLSGGDGHAHLVQVAKGQRTAPNLVRLLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALKL 118
           N DV  + H   F+   +   F          CT + ++              + + L +
Sbjct: 69  NPDVLKLFHFGRFDIAAMLNAFGAVAAP--VYCTKIASKLVRTYTDRHGLRNLLQDLLGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              K ++  +                       E      +Y   DV     +
Sbjct: 127 DISKHQQSSDWGR-------------------AELSTAQIDYAASDVLYLHRL 160


>gi|115396098|ref|XP_001213688.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193257|gb|EAU34957.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 761

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 41/178 (23%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           +  Y     V L      +    +          Q+L E  
Sbjct: 245 KEIAIDLE--------HHDVHSY--HGLVSLMQISTREKDWVVDTLKPWREELQMLNEVF 294

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H S  +   L+    L I       T   A +   P        +LK   Q
Sbjct: 295 TDPSILKVLHGSSMDIIWLQRDLGLYI--VGMFDTYHAACALNYPK------RSLKYLLQ 346

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           K    +              L                 Y + D      I+  L    
Sbjct: 347 KFVNFEADKRYQMADWRIRPLPSGMFD-----------YARSDTHYLLHIYDHLRNEL 393


>gi|256827062|ref|YP_003151021.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
 gi|256583205|gb|ACU94339.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
          Length = 399

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 82/291 (28%), Gaps = 49/291 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E      L +           + L     DD  + +           VL    +
Sbjct: 39  VLAIDTE-----FLREKTYY-----ARLCLLQMQTDDETIIVDPFAVSD--LGVLAPLFQ 86

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-----SALKAVGEALK 117
           ++ +  + H+   +  +L       +       T V A   G        +L  V     
Sbjct: 87  SSSIMKIVHSGRQDLEILNREVG--LLPQPLFDTQVAAALLGHTQQIGYGSL--VSAVCG 142

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   KM+   +   R                           Y   DV    +++  +  
Sbjct: 143 VQLAKMDSFTDWSRRPLS-------------------ASQISYAADDVIYLPQLYHTMTD 183

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
              +   + +LD    D    +D      L      +R +  + +  L+   +S++R + 
Sbjct: 184 ELERLGRIHWLD---PDFAALIDP----ALYVDDPRDRYRRLKRVGQLSRRQLSAAREVA 236

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
                        +      T ++V+ + K+       +F  R  + R + 
Sbjct: 237 --AWREKRARDRDIPRKWVMTDEQVVEACKREARTIDSLFMVRGLSDRLST 285


>gi|229472341|gb|ACQ72685.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYTMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|114569802|ref|YP_756482.1| ribonuclease D [Maricaulis maris MCS10]
 gi|114340264|gb|ABI65544.1| ribonuclease D [Maricaulis maris MCS10]
          Length = 386

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 48/178 (26%), Gaps = 27/178 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E        +  +        + L      +  V +       +  +   E + 
Sbjct: 22  YVAVDTE------FMRETVYW----PQLCLIQAAAGETEVIIDPLAEG-IDLEPFWELMA 70

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V H +  +  +        +  H    + V A + GL  ++        L    
Sbjct: 71  DERIIKVFHAARQDLEIFFHQGGDALIPHPMFDSQVAAMALGLGDSIAYDALVRTL---- 126

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                 L     KG        R   + +        Y   DVT  R+++  +     
Sbjct: 127 ------LNRPIDKGPRFTDWSRRPLSDAQTK------YAIADVTHLRDLYPMMVERLE 172


>gi|159038749|ref|YP_001538002.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
 gi|157917584|gb|ABV99011.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
          Length = 566

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 68/279 (24%), Gaps = 65/279 (23%)

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
                  +    +L    F   G+ + +      + V        P    V        R
Sbjct: 234 FGVRQLHADSPMELVR-AFARVGVEVPNTRSWVLRGV------DHPAVPLVLEY-KELYR 285

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
                     +A   DGR R      G   +GRW+        +P+              
Sbjct: 286 IWTAHGWAWRDAWVRDGRFRPEY-VPGGVVSGRWATRGGGALQIPK-------------- 330

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
                             +R  V+A  G  LVVAD   +E RVLA ++G+     A   G
Sbjct: 331 -----------------VIRRAVVADPGWTLVVADAGQLEPRVLAAVSGDTRLAAAAGAG 373

Query: 406 EDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL 465
           +                      RA  KV  L   Y                     +  
Sbjct: 374 DLYAALARDAFGG---------DRARAKVALLGAMYGQTGG----------------SAA 408

Query: 466 VKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                    +  A  +      +     +   ++G  C 
Sbjct: 409 PALEVLRRNYPAAFAYVESAARSGESGGLVRSWLGRTCP 447



 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 35/159 (22%), Gaps = 27/159 (16%)

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
              +             G +     +  R+ +         +  A       G       
Sbjct: 387 DRARAKVALLGAMYGQTGGSAAPALEVLRRNYPAAFAY---VESAARSGESGGLVRSWLG 443

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           R   P      +                               +  R    G      ++
Sbjct: 444 RTCPPGSVGVDE--------------------EEPVPAGGEGGRSARARARGRFTRNFVI 483

Query: 603 QAVSRDILA--EGMMN--ATKAGYDIVLTVHDEIVCETP 637
           QA + +  A    M+      +  ++V   HDE++   P
Sbjct: 484 QATAAEWAATLLAMLRGELAGSDAELVFFQHDEVIVHCP 522


>gi|310818189|ref|YP_003950547.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
 gi|309391261|gb|ADO68720.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1]
          Length = 630

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 74/596 (12%), Positives = 141/596 (23%), Gaps = 142/596 (23%)

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L L   + +  K  +A   +    + +     P          EY K D   T ++F 
Sbjct: 64  RYLGLDISEDK--KNPLAWRLRYGELDGVPVERWP------VEAVEYPKCDARYTIDVFF 115

Query: 174 RLEPL------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + E                 +    ++    +  G   +      L + V+ E  +    
Sbjct: 116 KQEEQARDVTNGGNLHAEPDQMRAAFVLHLASIWGLRTNGVAVAELRKRVEAEWQQNRIR 175

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET---------TCQRVLSSNKKLTPQ 272
            ++        S+  ++L   +    G +      +         T +  L       P 
Sbjct: 176 FQAAGIFRADGSKDTKRLAALVTAAYGGNPPYTAPSARYPDGQIATDRDTL--LGSGDPL 233

Query: 273 AIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
                    +  +     L+ +   ++    L    +F     T R S      Q LP+ 
Sbjct: 234 LED-LGKSGKVDKYKSTYLDVVEAGVS----LPINPRFNVLVSTTRVSSD---YQQLPQK 285

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL--- 389
                                          +R    A  G      D  G+E R +   
Sbjct: 286 G-----------------------------GIREVHEARPGYVFCSVDYGGLELRTMAQR 316

Query: 390 -AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
             W  G      A  +G D++    A                +     +A+ ++  AK  
Sbjct: 317 AIWELGYSKMADALNSGLDVHTLAAAEFLG---ESYAGLLAKVKAKDPVAVAFRQLAKIL 373

Query: 449 ----QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                   +   L  N  A    +     +  D     R       +  +          
Sbjct: 374 NFGKGGGMTGGSLVYNARAKDRVSFCLLAKRADMCGVERVPVTVQRKPKMVCRTCVEVAR 433

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
            + + W            +L +  +     G                             
Sbjct: 434 ELDEKWLAAWPE----QRDLQRKAKSLTYGGGVADVM----------------------- 466

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKA---- 620
                       R     T            ++     Q +       GM   ++     
Sbjct: 467 -----IPGANILRGACGYT------------QILNTPFQGLGAVGCKLGMWRVSREMYTV 509

Query: 621 ------GYDIVLTVHDEIVCE--------TPDTDEFNASMLYHLM-TSNPSWAKGL 661
                 G  +VL VHDE++ E          D  E  A ++   M  + P  A  +
Sbjct: 510 RSSPLFGSRLVLNVHDELISELLADDQQRLHDAAERKALLMRDAMKETTPDLAAAV 565


>gi|223986774|ref|ZP_03636758.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
 gi|223961261|gb|EEF65789.1| hypothetical protein HOLDEFILI_04081 [Holdemania filiformis DSM
           12042]
          Length = 187

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 27/153 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-------HD--- 50
           M    IDFET +P  ++ C +     D   ++F+  +   P   +D         H    
Sbjct: 1   MKWAAIDFETANPSPMSACAVGLTVFDEGEMVFSDSWLIRPHPYYDAFYPSFIDIHGITP 60

Query: 51  ---------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLV 98
                    P + + LK  L +  V   AHN+ F+  VL +C   + L++P   + CT+ 
Sbjct: 61  DQVADAPFFPKVYEQLKPWL-DGGVL-CAHNAGFDMKVLASCCSLYRLELPDAPYFCTVK 118

Query: 99  LARSNGL---PSALKAVGEALKLSSQKMEEGKE 128
           L+R          L  V + + +     + G +
Sbjct: 119 LSRKVYPYLKHHRLNDVCDYMGIQLDHHDAGSD 151


>gi|229472511|gb|ACQ72770.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472585|gb|ACQ72807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 62/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    E             
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 134 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +    M      +   +     +  +HDE
Sbjct: 158 QGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|229472259|gb|ACQ72644.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472389|gb|ACQ72709.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472463|gb|ACQ72746.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472553|gb|ACQ72791.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472573|gb|ACQ72801.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472587|gb|ACQ72808.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472597|gb|ACQ72813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|88807852|ref|ZP_01123363.1| putative ribonuclease D [Synechococcus sp. WH 7805]
 gi|88787891|gb|EAR19047.1| putative ribonuclease D [Synechococcus sp. WH 7805]
          Length = 214

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 47/171 (27%), Gaps = 24/171 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E          G+    +   + L     D   V              LK  +E 
Sbjct: 32  LAVDTE--------AMGLIHGRD--RLCLVQICDDKDQVACIRIALGQTEAPRLKALMEA 81

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
           T +  V H + F+   L     L I ++   CT V +R          LK +   L  + 
Sbjct: 82  TTIEKVFHFARFDVAALA--TGLGIRVNPLFCTKVGSRLARTYTPRHGLKDLVMELVGVE 139

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
             K  +  +           + L D            +    +  + V   
Sbjct: 140 LDKQAQSSDW-------GRVDELTDVQLAYAAND-ARYLLAARRQLEVMLR 182


>gi|206598216|gb|ACI16020.1| exosome subunit Rrp6P [Bodo saltans]
          Length = 741

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/274 (9%), Positives = 68/274 (24%), Gaps = 37/274 (13%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L           + D +        L     +T++  V H +  +   L+  F   + + 
Sbjct: 259 LMQLSTRSED-YIVDVLRLRSHMHRLNRVFLDTNILKVFHGAKEDVRWLQKDFG--LYVA 315

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T +  ++  +P +L                    +  FC     +     +     
Sbjct: 316 NMFDTGIALQTLHMPHSLAFA-----------------VDHFCGVRLDKKYQTADWRIRP 358

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ---------------ELWYLDQTINDRG 196
                   Y + D      +  RL+ L    +                            
Sbjct: 359 VPSE-MIHYARQDTHYLLYVHDRLKALLLHAEGRASVGNLLVHVYQDSRRLCLTRYEKPM 417

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL-KTWLFLETGLHLEDLT 255
             VD      + + +        + L  +      ++R  ++     +     L +    
Sbjct: 418 LDVDTTYREAMGKSLGGLSATQLEVLRVVFNWRDQAARDADESPPAIMHASAILQIASKL 477

Query: 256 ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
            T+ + +L+    ++    +   +     +  + 
Sbjct: 478 PTSAKEILACCAPVSLVVRRDIGHLCDLVKKTLT 511


>gi|148807534|gb|ABR13570.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTY-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------FGRECRSFWWVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|126697114|ref|YP_001092000.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301]
 gi|126544157|gb|ABO18399.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9301]
          Length = 211

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 26/203 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E          G+    +   + L     +           +      LK+ LE
Sbjct: 28  YLAIDTE--------AMGLIHGRD--RLCLVQICNEFKRTSCIKIELNTSSSPHLKKLLE 77

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +T + H + F+   LK   NL+I      CT + ++          +          
Sbjct: 78  DEKITKIFHYARFDVAALK--CNLEINTKNIFCTKIASK----------LARTY----TN 121

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               K+LI      E  +     +  ++ +  +   +Y   DV    E   +L+ +  +E
Sbjct: 122 KHGLKDLINELLGIELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMHKLKVILERE 181

Query: 183 QELWYLDQTINDRGYCVDVALAH 205
                  +         D+ +  
Sbjct: 182 DRYELAQKCFETVSVHADLDILK 204


>gi|78211959|ref|YP_380738.1| 3'-5' exonuclease [Synechococcus sp. CC9605]
 gi|78196418|gb|ABB34183.1| 3'-5' exonuclease [Synechococcus sp. CC9605]
          Length = 214

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 52/196 (26%), Gaps = 28/196 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E          G+    +   + L      +  V              LK   E 
Sbjct: 32  LAVDTE--------AMGLIHGRD--RLCLVQIADAEDRVACVRIGLGQTEAPNLKRLFEA 81

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             V  V H + F+   L     L I ++   CT               VG  L  +    
Sbjct: 82  PTVEKVFHFARFDVAALA--AGLSIEVNPVFCT--------------KVGSRLGRTYTPR 125

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
              K+L+      E  +     +     E       Y   DV       +RLE +    +
Sbjct: 126 HGLKDLVMELVGVELDKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEQML--RR 183

Query: 184 ELWYLDQTINDRGYCV 199
           E  +       +   V
Sbjct: 184 EGRWDLAQRCFQCVPV 199


>gi|126174091|ref|YP_001050240.1| ribonuclease D [Shewanella baltica OS155]
 gi|125997296|gb|ABN61371.1| ribonuclease D [Shewanella baltica OS155]
          Length = 369

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 84/308 (27%), Gaps = 47/308 (15%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L +D E     T                   + L    +D   + L D V  P +   
Sbjct: 24  KILVLDTEFVRTRTYY---------------AKLGLIQ-AYDGKTLALIDPVALPDL-AQ 66

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               L + ++  + H+   +  V                + + A   G+           
Sbjct: 67  FWALLSDPNIVKLVHSCSEDLEVFAHYG--KCQPTPLFDSQIAASLCGMGH--------- 115

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +   K+ E        C GE  +    R     R        Y   DV    +++ +LE
Sbjct: 116 GVGYAKLVE-------TCLGEVIDKGESRTDWIRRPLTEAQLSYAANDVLYLYQLYPQLE 168

Query: 177 PLSSKEQELWYLDQTINDR--GYCVDVALAHTLNQIVD--VERTKLDQELESLTYGLVSS 232
              S +  L +L +       G   D  L     ++ +           L+ L    +  
Sbjct: 169 AKLSAQGRLAWLYEEGERMTLGRLADPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRLEK 228

Query: 233 SRCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL 291
           +   +    ++  + GL  L      +    L     LT Q  ++              L
Sbjct: 229 ALVRDLALGFVVKDHGLIALAKKQPKSSAD-LFKLNDLTEQEKRIHGK-DLLRVLQTADL 286

Query: 292 NTLVEAMN 299
             L E ++
Sbjct: 287 VNLPELVD 294


>gi|114768885|ref|ZP_01446511.1| ribonuclease D [alpha proteobacterium HTCC2255]
 gi|114549802|gb|EAU52683.1| ribonuclease D [alpha proteobacterium HTCC2255]
          Length = 386

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 81/305 (26%), Gaps = 54/305 (17%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVHDPVMP 54
            + +D E     T                   + L       +      L D +   +  
Sbjct: 22  YVTLDTEFLRERTYYS---------------KLCLVQMAHPGNTEDSAVLIDPLSPDLSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L E  +N +V  V H +  +  +     +  I    +  T V A   G        GE
Sbjct: 67  DPLYELFKNPNVVKVFHAARQDLEIF--FIDKKIIPFPFFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-- 172
            +          ++L+   C     +     +      + +    Y  GDVT  REI+  
Sbjct: 118 QVGY--------EKLVRSICNEGLDKSSRFTDWSARPLSNKQM-HYAIGDVTYLREIYEF 168

Query: 173 ----KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL-----E 223
                +     +  +E   +        Y +D   A    +        L          
Sbjct: 169 LSNKIKNNKRQAWVEEELKILMDPE--TYTIDPKYAWRRVKTRSSSWKMLAAIAELAMFR 226

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                  +  R        +        + L + T  R+L  + +    A  + N+  +A
Sbjct: 227 EKYAQQKNIPRNRVYKDDCMMELAATRPKSLEDLTKSRLLLRDARKGQIAEGILNSIRQA 286

Query: 284 SRSAV 288
            +   
Sbjct: 287 DKYKS 291


>gi|300867748|ref|ZP_07112393.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300334331|emb|CBN57565.1| 3'-5' exonuclease (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 433

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 91/307 (29%), Gaps = 57/307 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-----DHPVELWDCVHDPVM-PQ 55
             L+ID E           +  Y  +  + L     D      +   L D +  P +   
Sbjct: 21  KILWIDTE-----------VADYKFNPTLSLIQVLADANDLTGNASFLLDVLEQPELTVD 69

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            + + + N D+  V HN+ ++   L              CTL LAR    P         
Sbjct: 70  FIDKIMANPDIEKVMHNASYDIRFLGND-----RAQNITCTLKLARKI--PY------YV 116

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L L + K+   K LI   C     +          R       EY K DV    E+   L
Sbjct: 117 LPLPNHKL---KTLIEALCGIPNVDKAEQGGDWGKRPLTEKQLEYAKMDVVYLAEVHSHL 173

Query: 176 EPLSSKEQELW---------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             +  +                 Q I  +   +D  +A      +        Q  +++T
Sbjct: 174 IEIVDEYCPDSATENLTLLGEQYQEIEAQWKPLDSEIAE-----IKERMKAGMQ-AQNVT 227

Query: 227 YGLVSSSRCLEKLK------TWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVF 277
                       +K        L    G+       LT+   +++       + Q  ++ 
Sbjct: 228 NNSYFKLSSSTTMKVDFMTLANLAESQGIELNFPVTLTKEVQKQLGKLISHPSLQIEEIS 287

Query: 278 NNRMRAS 284
           + R+ ++
Sbjct: 288 SFRLTSA 294


>gi|229472373|gb|ACQ72701.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 62/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    +             
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAQS------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 134 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +    M      +   +     +  +HDE
Sbjct: 158 QGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|149912958|ref|ZP_01901492.1| exonuclease, putative [Roseobacter sp. AzwK-3b]
 gi|149813364|gb|EDM73190.1| exonuclease, putative [Roseobacter sp. AzwK-3b]
          Length = 203

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 46/180 (25%), Gaps = 33/180 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L            L   LE
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVVQMSGGDGNAYLVQIDKGQTEAPNLAALLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           N D+  + H   F+   +   F          CT + ++          LK + + L   
Sbjct: 69  NPDILKLFHFGRFDIAAMFNAFG--ALAAPVYCTKIASKLVRTYTDRHGLKNLMQEL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +             +        Y   DV    ++   L  + 
Sbjct: 124 ---------LDKDISKQQQSSDWGAPKLTEAQLD------YAASDVLYLHQLRDELNRML 168


>gi|169234702|ref|NP_001108472.1| PM-Scl autoantigen-like protein [Bombyx mori]
 gi|18700467|dbj|BAB85201.1| PM-Scl autoantigen-like protein [Bombyx mori]
 gi|22474519|dbj|BAC10623.1| PM-Scl autoantigen-like protein [Bombyx mori]
          Length = 451

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 27/179 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E  S  DL+      Y       L     D+    + D +        L     
Sbjct: 140 QIAVDVEHHSYRDLS----GLYLILGITCLIQISTDEGGDFIIDALAVREHIHKLNVVFT 195

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLSS 120
           +     V H +  +   L+  F + +       T   A+S GLP+ +LK +      + +
Sbjct: 196 DPKKLKVFHGADSDVLWLQRDFGVYL--VGLFDTYHAAKSLGLPALSLKFLLMKYCGVDT 253

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K     +                R  P       +  +Y + D      +++ ++   
Sbjct: 254 DKTYRLADW-------------RIRPLP------DVLIKYARMDTHYLLYVWRVMKNQI 293


>gi|239980380|ref|ZP_04702904.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291452241|ref|ZP_06591631.1| DNA polymerase I [Streptomyces albus J1074]
 gi|291355190|gb|EFE82092.1| DNA polymerase I [Streptomyces albus J1074]
          Length = 562

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/414 (13%), Positives = 103/414 (24%), Gaps = 145/414 (35%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
           F   G+ +        +++        P    +  +  +  R  V      +     DGR
Sbjct: 235 FARAGIKVTSTRRWELEKI------DHPAVAPLLAH-KKLYRIWVAHGWQWLADWVRDGR 287

Query: 304 LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDC 363
            R +    G + +GRW+        +P+                                
Sbjct: 288 FRPSY-LPGGTVSGRWATNGGGALQIPK-------------------------------V 315

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           +R  V+A  G +LVVAD   +E R+LA ++G++  ++     +DLY     R+F      
Sbjct: 316 IRRAVVADPGWRLVVADADQLEPRILAAVSGDRALMEVASRPDDLYQAVSDRAFQGDRD- 374

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCR 483
                  + K+  L   Y            T+G  L   A L                  
Sbjct: 375 -------LAKLAVLGAVY----------GQTSGDGLKNLAAL------------------ 399

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
                                      R++        + + +A     E         R
Sbjct: 400 ---------------------------RRRFPAAV---DHVDEAARAGEEGRLVRTWLGR 429

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQ 603
              P            +           +          ++    R    G      +VQ
Sbjct: 430 TCPPATAPGGPAEEAGIPD------ALPEGDTGGYAPGASSGARAR----GRFTRNFVVQ 479

Query: 604 AVSRDILAEGMMNATK-----------------AGYDIVLTVHDEIVCETPDTD 640
                         +                     ++V   HDE++   PD +
Sbjct: 480 G-------------SAADWALLLLAALRSSLAPLRAELVFFQHDEVIVHCPDEE 520


>gi|148807504|gb|ABR13556.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDASGLELRMLARYMRDER 186


>gi|163841491|ref|YP_001625896.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954967|gb|ABY24482.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 411

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 86/339 (25%), Gaps = 62/339 (18%)

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           L    +          +G  L     +         ++    R    L  E     V   
Sbjct: 129 LVDSAQQSLFDEPVRRKGASLDQLAEELRAQLTAVQKSSQPKRLQLLLAAESAASLVAAE 188

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +      P      E    D                 L   +  +              
Sbjct: 189 MQ--HAGVPWRVDIHEQLLEDALGPRPTGMQRPEKMDRLLAELRAKL-----------GA 235

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAV 288
           +  +    + L   L    G+     T++     L + K   P    +     + SR   
Sbjct: 236 IGLNPDSPQDLMRALHRA-GIE----TKSARTWELQNIK--HPAIEPLLAY-KKLSRLFS 287

Query: 289 LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
                 ++    DGR R     +G   +GRW+        +P+                 
Sbjct: 288 ANGWAWLDQWVHDGRFRPEY-VVGGVASGRWASRGGGALQIPK----------------- 329

Query: 349 SITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL 408
                          VR  V A+ G KL+VAD A +E RVLA +A +    +A       
Sbjct: 330 --------------QVRGAVHANHGYKLIVADAAQLEPRVLAALAQDAKMAEA------- 368

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
                   +    AQ     RA  KV  L   Y      
Sbjct: 369 --AQDHDLYAGIAAQGFGGDRAKAKVALLGAIYGATTGE 405


>gi|268572043|ref|XP_002641219.1| C. briggsae CBR-POLQ-1 protein [Caenorhabditis briggsae]
 gi|187032127|emb|CAP28706.1| CBR-POLQ-1 protein [Caenorhabditis briggsae AF16]
          Length = 631

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 41/160 (25%), Gaps = 15/160 (9%)

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           E     E +       +   G   D                 L++++  L      +   
Sbjct: 479 EKSFDLEMDTCQAVLKMFYSGISFDRVACKQFIGDTRKRIEILEEQIWRL-AHGKFNINS 537

Query: 236 LEKLKTWLFLETGLHLEDLTE--------TTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
             +    LF   GL   + +          T +++L+          ++   R       
Sbjct: 538 SNEASNVLFHRLGLVYPETSSCKIKQRHLPTNKQILNQMIGQHQIVEKILTYRH----IQ 593

Query: 288 VLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQ 327
                 L+   N + R+    +    + TGR        Q
Sbjct: 594 HTLTQCLLPLANYEKRIHC--RMEMCTATGRMLTSSPNLQ 631


>gi|229472239|gb|ACQ72634.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNSDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|254416561|ref|ZP_05030312.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196176527|gb|EDX71540.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 303

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 71/271 (26%), Gaps = 58/271 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAED-VCVILFAFGFDD-----HPVELWDCVHDPVMPQV 56
            L++D E           +  Y  D   + L     D        V + D ++ P +   
Sbjct: 22  ILWLDTE-----------VADYKTDTPQLSLIQVLADGNDLTAESVGILDVLYQPELADE 70

Query: 57  LK-EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG------LPSAL 109
              + + N  +  V HN+ ++R  L              CTL LA++            L
Sbjct: 71  FIAKVMYNPAIEKVFHNASYDRKFLGKH-----KAKNVTCTLELAKTIPYYRLPVPNYQL 125

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           K + E   +  Q  +            E       R     +        Y   DV    
Sbjct: 126 KTLTEYFGICPQVDKT-----------EQTGDWRKRPLSPRQLD------YAAKDVVYVA 168

Query: 170 EIFKR------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            + +        +P +   + L    + I  R   +D        Q +        Q  +
Sbjct: 169 HLHRHLLDLAQPDPATEDIEALTLRYRQIEHRWKQLDTE-----IQQIKERLKAAMQ-AQ 222

Query: 224 SLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
           ++            +    +       +   
Sbjct: 223 NVKKVHGFRLSSQNRTSKKVAFHQLAEVTKK 253


>gi|190575218|ref|YP_001973063.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a]
 gi|190013140|emb|CAQ46772.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a]
          Length = 359

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 64/256 (25%), Gaps = 29/256 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L         + +   +    M + L   L +  +T V H++  +    +      
Sbjct: 36  PQLALVQMAVGQDILLIDPLIPG--MTEALAHWLADESITKVMHSASEDLVAFRWACG-- 91

Query: 88  IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +       T + A   G+   +   K V E   ++  K E   + + R            
Sbjct: 92  VLPRPLFDTQIGASLAGIGGGMGYQKLVAEITGVALAKGETRSDWMRRPLS--------- 142

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV--DVA 202
                         +Y   DV     +   ++          +L          V  D  
Sbjct: 143 ----------ESQLQYAADDVEHLFALHDAIDARLQALGRQQWLHDDGERLLASVANDED 192

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVS-SSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
               L            Q             +R  ++ ++W+           T    + 
Sbjct: 193 RWPHLAMRSAQFLDAAAQHRLLRLLRWRDVQARSSDRPRSWILDNELAATLARTPPADEA 252

Query: 262 VLSSNKKLTPQAIQVF 277
            L    +  P+A +  
Sbjct: 253 ALGKLFEQFPKAPRKL 268


>gi|304320833|ref|YP_003854476.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
 gi|303299735|gb|ADM09334.1| hypothetical protein PB2503_06342 [Parvularcula bermudensis
           HTCC2503]
          Length = 204

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 50/191 (26%), Gaps = 35/191 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET     L             + +      D    L            LK  L +
Sbjct: 20  VAVDSETLGLNPLRD----------RLCVVQLSAGDGDAHLVTFDAGAYDAPHLKAVLSD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             +  + H + F+  V K    +D       CT + ++          LK V   +  + 
Sbjct: 70  PQLLKIFHFARFDVAVFKHWLGVD--TTPIYCTKIASKLARTYTDRHGLKDVVREMTGVE 127

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                       E       Y   DV     + + L+ + 
Sbjct: 128 LSKQQQSSDW-------------------AAAELTEAQRAYAASDVLHLHAVREGLDRMI 168

Query: 180 SKEQELWYLDQ 190
            +E     L  
Sbjct: 169 DREGRRALLTA 179


>gi|229472377|gb|ACQ72703.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 63/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A   K               
Sbjct: 64  DKIGMSRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATAKD-------------- 106

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    E             
Sbjct: 107 ---------------------KEIRQAYMDAIPGLEKLVTAVKSKAES------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 134 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +    M      +   +     +  +HDE
Sbjct: 158 QGSAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|58617449|ref|YP_196648.1| ribonuclease D [Ehrlichia ruminantium str. Gardel]
 gi|58417061|emb|CAI28174.1| Ribonuclease D [Ehrlichia ruminantium str. Gardel]
          Length = 389

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 56/196 (28%), Gaps = 36/196 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E      +  C          + L    +      + D + D +   VL+   
Sbjct: 25  KFIAVDTE-----FIRNCNEYY----PRLSLIQIAWSKGK-CVIDVLADDIDLSVLESIF 74

Query: 62  ENTDVTIVAHNSYFER-TVLKACFNLDIPIHRWICTLVL----ARSNGLPSALKAVGEAL 116
            N ++  + H+   +   +L     +    +    + +     A  +      K V + L
Sbjct: 75  YNKEIVKIFHDCKQDIDALLTKFPRI---PYPIFDSQIAAMFCAYYDNAVGYSKLVAQFL 131

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +S  K+                      N      +     +Y   DV    E+++ L 
Sbjct: 132 DVSLDKLTL-----------------KRSNWLMRPLSDDK-IQYALDDVVYLYELYQVLY 173

Query: 177 PLSSKEQELWYLDQTI 192
                 + L +  + +
Sbjct: 174 DNLISSKRLLWFLEEM 189


>gi|99081315|ref|YP_613469.1| ribonuclease D [Ruegeria sp. TM1040]
 gi|99037595|gb|ABF64207.1| ribonuclease D [Ruegeria sp. TM1040]
          Length = 385

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 41/194 (21%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMP 54
            + +D E     T                   + L    +         L D +   +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQIAYRGDGETDAVLVDPLSGDLSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L E   N DV  V H +  +  +     +  +       T V A   G        GE
Sbjct: 67  EPLYELFRNEDVVKVFHAARQDLEIF--WVDAGVFPKPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ + CK    +     +      +      Y   DVT  R+I++ 
Sbjct: 118 QVGY--------ETLVRKICKQGLDKTSRFTDWSRRPLSDAQ-KTYALADVTHLRQIYEH 168

Query: 175 LEPLSSKEQELWYL 188
           L     K +   ++
Sbjct: 169 LRKELDKTKRSHWV 182


>gi|218749845|ref|NP_001136335.1| egalitarian [Nasonia vitripennis]
          Length = 829

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 83/291 (28%), Gaps = 30/291 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFN 85
             + L   G     + ++D +  P + Q   L++ LE+ +V  V H+   +   L   F 
Sbjct: 425 GRLTLLQIGTMSGLIYIFDLITCPNILQAGGLQKLLESENVIKVIHDCKNDSANLFHQFG 484

Query: 86  LDIPIHRWICTLVLARSNGL-----------PSALKAVGEALKLSSQKMEEGKELIARFC 134
           + +       T                     + L  + +     S  ++E         
Sbjct: 485 ITL--VNIFDTQAAHSVIEYQNTGKPVYKVKNANLNTLCDLYGAPSNVLKE--------- 533

Query: 135 KGETHECLYDRNKPNHREAW-RLFGEYCKGDVT-VTREIFKRLEPLSSKEQELWYLDQTI 192
             +         +   R    R    Y   DV  +   I+  +  L   E +  + +   
Sbjct: 534 --QLKNIYRRDQRYWARRPLTRDMIVYASSDVQSLVPLIYNAMSKLIKPEMQKLFNELCE 591

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
                 ++        +   +E    D   +       +      +++   +LE     +
Sbjct: 592 EQILMHINPNEVKVRKKQRKIETEVADLRRKMDETIGKNIVLSNREIRLLRYLELTKEEK 651

Query: 253 DLTETT--CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD 301
           +  + +    + L   + +  +     +      ++   +  +L    + +
Sbjct: 652 EKLKGSYKVAKKLEKLESMGQEKNDSSDEDDEDDKNDDTEYPSLDSYTSEN 702


>gi|167462371|ref|ZP_02327460.1| DNA polymerase I-like protein- 3'-5' exonuclease and polymerase
           domains [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 573

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/258 (10%), Positives = 57/258 (22%), Gaps = 57/258 (22%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDD---HPVELWDCVHDP-------------------- 51
           D    G+  Y +    +   F                H                      
Sbjct: 134 DFEGTGVDSYID----LSIGFSIWLPLLGEGYYLPYGHVDMRGVEGFEFLNDTFAYKDSG 189

Query: 52  ------VMPQVLKEALENTDVTIVAH--NSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
                  +   ++  L         H  ++ ++  V       +I    W  TL      
Sbjct: 190 PQLTRSKVLDAIRPYLAQPTHGKTFHMGSARYDLHV-ARNDGYEIRGCVW-DTLDAMHLL 247

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                     E   L     + GK            +   +R       +  L G Y   
Sbjct: 248 NEHE------EKYGLKKIVEKYGKYFDIPGPIYTFEDMFGNR--SPAPFSVELVGIYAIK 299

Query: 164 DVTVTREIFKR----LEPLSSKEQELW--------YLDQTINDRGYCVDVALAHTLNQIV 211
           DV    ++F+     +        + +         +D  +   G+ +D+     L +  
Sbjct: 300 DVLYGWKLFEWQVEMMRKSPGCLLDCYAKIDSKLPEVDVFMARCGFEIDLDGLKALEEEF 359

Query: 212 DVERTKLDQELESLTYGL 229
                +   ++       
Sbjct: 360 IPALEQAKHDVIKTYGID 377



 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 10/158 (6%)

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVAL--AHTLNQIVDVERTKLDQELESLTYGLVS 231
           R++      +    +       G         A    + +  E+     E  +  Y    
Sbjct: 403 RIKRWEDSVRRKQKIVNECETAGKTGLKKYRDAKEKLRKLYAEKPVPADEEHAPRYVTEF 462

Query: 232 SSRCLEKLKTWLFLETGL--HLED----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           S      LK  ++   G+             +T   V+    +       +        +
Sbjct: 463 SITNGNHLKYLIYDHLGIIDVTPKFYRGKERSTASDVMEEYYETETALKPLATVA-TYEK 521

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                +  +  A+ +DGRL    +  G +RTGR+S   
Sbjct: 522 LLNTYIRKIPHALEADGRLHTEFK-AGGTRTGRYSSSG 558


>gi|120599067|ref|YP_963641.1| ribonuclease D [Shewanella sp. W3-18-1]
 gi|120559160|gb|ABM25087.1| ribonuclease D [Shewanella sp. W3-18-1]
          Length = 367

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 75/273 (27%), Gaps = 45/273 (16%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L +D E     T                   + L    +D   + L D V  P +   
Sbjct: 22  KILVLDTEFVRTRTYY---------------AKLGLIQ-AYDGKTLALIDPVALPDL-AK 64

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               L N ++  + H+   +  V                + + A   G+           
Sbjct: 65  FWALLANPNIIKLVHSCSEDLEVFAHYG--QCQPVPLFDSQIAASLCGMGH--------- 113

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +   K+ E        C GE  +    R     R        Y   DV    +++ +LE
Sbjct: 114 GVGYAKLVE-------TCLGEVIDKGESRTDWIRRPLTEAQLAYAANDVLYLHQLYPQLE 166

Query: 177 PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD---VERTKLDQELESLTYGLVSS 232
               ++ +  W  ++ +      +D    +T    V             L+ L    +  
Sbjct: 167 AKLVAQGRLNWLYEEGVRMTEGRLDTPDLNTAYLKVKNAFQLTEIQLAYLKVLAKWRLEK 226

Query: 233 SRCLEKLKTWLFLETGL-HLEDLTETTCQRVLS 264
           +   +    ++  + GL  L      +   +L 
Sbjct: 227 ALARDLALGFVIKDHGLIALAKKQPKSMTELLK 259


>gi|84501202|ref|ZP_00999407.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola batsensis HTCC2597]
 gi|84390493|gb|EAQ02981.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola batsensis HTCC2597]
          Length = 230

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 51/184 (27%), Gaps = 43/184 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFG-----FDDHPVELWDCVHDPVMPQ 55
           M  + +D ET         G      D  ++                       +  MPQ
Sbjct: 1   MREIVLDTETT--------GFDPEQGD-RIVEIGAVELWNHVPTGETYHVYINPERSMPQ 51

Query: 56  VL-------------KEALEN---------TDVTIVAHNSYFERTVLKACFNL-DIPIHR 92
                          K    +          D  +V HN+ F+   + A     +IP   
Sbjct: 52  EAFEVHGLGDDFLRDKPVFRDVARGFVEFVKDAKLVIHNASFDMKFINAELGWLNIPAIP 111

Query: 93  WI---CTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           W     TL +A  R  G P++L A+     + +  +   G  L +        E +  R 
Sbjct: 112 WDQAIDTLAIARQRFPGSPASLDALCRRFGIDNSARTLHGALLDSEILAEVYLELIGGRQ 171

Query: 147 KPNH 150
               
Sbjct: 172 PDFA 175


>gi|229472227|gb|ACQ72628.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYEGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|229472221|gb|ACQ72625.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472277|gb|ACQ72653.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472293|gb|ACQ72661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472375|gb|ACQ72702.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472445|gb|ACQ72737.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472465|gb|ACQ72747.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472501|gb|ACQ72765.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472515|gb|ACQ72772.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472547|gb|ACQ72788.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472579|gb|ACQ72804.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|73951465|ref|XP_545850.2| PREDICTED: similar to DNA polymerase gamma subunit 1 (Mitochondrial
            DNA polymerase catalytic subunit) (PolG-alpha) [Canis
            familiaris]
          Length = 1234

 Score = 62.1 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/406 (12%), Positives = 105/406 (25%), Gaps = 60/406 (14%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R           GR+   +   Q + 
Sbjct: 794  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRHPDY----DEEGRYGAILP--QVVT 847

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G   V AD+   E  + A
Sbjct: 848  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYVFVGADVDSQELWIAA 901

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 902  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQP 961

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA---- 502
              +++       L       K        +    +    +       ++     T     
Sbjct: 962  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSEEGEWLVRELDLPVDRTEDGWV 1021

Query: 503  -CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              + ++K  R+        W +   A E+    G       + +   +        L   
Sbjct: 1022 SLQDLRKIQREASR--KSRWKKWEVAAERAWRGGTESEMFNKLESIAMSDTPCTPVLGCR 1079

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRD---ILAEGMM 615
                                  +R L      G  +      +VQ+ + D   ++   M 
Sbjct: 1080 ---------------------ISRALEPSAVKGEFMTSRVNWVVQSSAVDYLHLMLVAMK 1118

Query: 616  NATKAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
               +         +++HDE+     + D + A+       +L   M
Sbjct: 1119 WLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1164


>gi|91070231|gb|ABE11151.1| putative ribonuclease D [uncultured Prochlorococcus marinus clone
           HF10-11H11]
          Length = 211

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 61/203 (30%), Gaps = 26/203 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E          G+    +   + L     + +         +      LK  LE
Sbjct: 28  YLAIDTE--------AMGLIHGRD--RLCLVQICNEFNRTSCIKIELNTSSSPHLKALLE 77

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +T + H + F+   LK   NL I      CT + ++          +          
Sbjct: 78  DDKITKIFHYARFDVAALK--CNLKINTKNIFCTKIASK----------LARTY----TN 121

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               K+LI      E  +     +  ++ +  +   +Y   DV    E   +L+ +  +E
Sbjct: 122 KHGLKDLINELLGIELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMHKLKVILERE 181

Query: 183 QELWYLDQTINDRGYCVDVALAH 205
                  +         D+ +  
Sbjct: 182 NRYELAQKCFETVSVHADLDILK 204


>gi|51013151|gb|AAT92869.1| YOR001W [Saccharomyces cerevisiae]
          Length = 733

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 56/199 (28%), Gaps = 34/199 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEA 60
             + +D E              Y     ++        +    L D +       +L E 
Sbjct: 233 KEIAVDLE-----------HHDYRSYYGIVCLMQISTRERD-YLVDTLKLRENLHILNEV 280

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119
             N  +  V H ++ +   L+      + +     T   +++ GLP  +L  + E    +
Sbjct: 281 FTNPSIVKVFHGAFMDIIWLQRDLG--LYVVGLFDTYHASKAIGLPRHSLAYLLE--NFA 336

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +L     +  +                     Y + D      I+ +L    
Sbjct: 337 NFKTSKKYQLADWRIRPLSK----------------PMTAYARADTHFLLNIYDQLRNKL 380

Query: 180 SKEQELWYLDQTINDRGYC 198
            +  +L  +     +    
Sbjct: 381 IESNKLAGVLYESRNVAKR 399


>gi|229472241|gb|ACQ72635.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 63/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    E             
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 134 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +  + M      +   +     +  +HDE
Sbjct: 158 QGSAGCVAKQWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|47934798|gb|AAT39837.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 172

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTC---QRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +     ++   L        +   +       +VL       P+A  +    +   + 
Sbjct: 30  EFNVGSRXQIAERLVGVGVKFKQKTEKGAVVVNXKVLEGI--DIPEAKTI-YEYLMLQK- 85

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P                
Sbjct: 86  RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPS--------------- 128

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 129 ---------VXAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 170


>gi|295837297|ref|ZP_06824230.1| DNA polymerase I [Streptomyces sp. SPB74]
 gi|295826463|gb|EFG64876.1| DNA polymerase I [Streptomyces sp. SPB74]
          Length = 565

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 73/495 (14%), Positives = 128/495 (25%), Gaps = 142/495 (28%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCL 236
            +   +N  G          L + +               +L +E+       V      
Sbjct: 183 LVAAELNATGLPWSAERHRELLRELLGERYAGGGEPRRLAELTEEVSRAFGRHV-RPDLP 241

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVE 296
             +    F E+G+ L        ++V        P    +     +  R         + 
Sbjct: 242 ADVLR-AFAESGVKLTSTRRWELEKV------GHPAVAPLLAY-KKLYRVWTAHGWGWLA 293

Query: 297 AMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDP 356
               +GR R      GA  +GRW+        +P+                         
Sbjct: 294 DWVREGRFRPRYVVGGA-VSGRWTTAGGGALQIPK------------------------- 327

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
                  VR  V+A  G +LVVAD A +E R+LA +AG+   L      +DLY     R+
Sbjct: 328 ------VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDAGLLDVAAKADDLYAAVSDRA 381

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
           F               K+  L                T+G  L   A L           
Sbjct: 382 FAGDRD--------RAKIAVLGAI----------YGQTSGDGLKNLAAL----------- 412

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                                             R++  +       + +A     E G+
Sbjct: 413 ----------------------------------RRRFPKAVAY---VDEAAR-AGEEGR 434

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
            +     R  P V  +                   + G  +      +   +R    G  
Sbjct: 435 LVRTWLGRTCPPVGGEDPG----------------EAGIPQEDEPAPSPSASRAR--GRF 476

Query: 597 LTENIVQAVSRDILAEGMMNATKAGY----DIVLTVHDEIVCE-TPDTDEFNASMLYHLM 651
               +VQ  + D     +    +A      ++V   HDE++            +++    
Sbjct: 477 TRNFVVQGAAADWTLLLLAALRRALRARAAELVFFQHDEVIVHAPAAEAAEIPALIAEAA 536

Query: 652 TSNPSWAKG-LPLKA 665
                   G +PL+ 
Sbjct: 537 REATRVCFGDIPLRV 551


>gi|229472533|gb|ACQ72781.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+  A                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              + +++A+      + +L   +    E               
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSEAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|151945630|gb|EDN63871.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
 gi|190407342|gb|EDV10609.1| exosome complex exonuclease RRP6 [Saccharomyces cerevisiae RM11-1a]
 gi|207341289|gb|EDZ69386.1| YOR001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256274006|gb|EEU08922.1| Rrp6p [Saccharomyces cerevisiae JAY291]
 gi|259149485|emb|CAY86289.1| Rrp6p [Saccharomyces cerevisiae EC1118]
          Length = 733

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 56/199 (28%), Gaps = 34/199 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEA 60
             + +D E              Y     ++        +    L D +       +L E 
Sbjct: 233 KEIAVDLE-----------HHDYRSYYGIVCLMQISTRERD-YLVDTLKLRENLHILNEV 280

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119
             N  +  V H ++ +   L+      + +     T   +++ GLP  +L  + E    +
Sbjct: 281 FTNPSIVKVFHGAFMDIIWLQRDLG--LYVVGLFDTYHASKAIGLPRHSLAYLLE--NFA 336

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +L     +  +                     Y + D      I+ +L    
Sbjct: 337 NFKTSKKYQLADWRIRPLSK----------------PMTAYARADTHFLLNIYDQLRNKL 380

Query: 180 SKEQELWYLDQTINDRGYC 198
            +  +L  +     +    
Sbjct: 381 IESNKLAGVLYESRNVAKR 399


>gi|323335702|gb|EGA76985.1| Rrp6p [Saccharomyces cerevisiae Vin13]
          Length = 733

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 56/199 (28%), Gaps = 34/199 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEA 60
             + +D E              Y     ++        +    L D +       +L E 
Sbjct: 233 KEIAVDLE-----------HHDYRSYYGIVCLMQISTRERD-YLVDTLKLRENLHILNEV 280

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119
             N  +  V H ++ +   L+      + +     T   +++ GLP  +L  + E    +
Sbjct: 281 FTNPSIVKVFHGAFMDIIWLQRDLG--LYVVGLFDTYHASKAIGLPRHSLAYLLE--NFA 336

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +L     +  +                     Y + D      I+ +L    
Sbjct: 337 NFKTSKKYQLADWRIRPLSK----------------PMTAYARADTHFLLNIYDQLRNKL 380

Query: 180 SKEQELWYLDQTINDRGYC 198
            +  +L  +     +    
Sbjct: 381 IESNKLAGVLYESRNVAKR 399


>gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2]
 gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2]
          Length = 377

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 59/193 (30%), Gaps = 33/193 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D E  S        +  + E   V L     D +   + D +    +  VLK   
Sbjct: 24  KRLAFDLEADS--------MHHFKE--KVCLVQMA-DPNDSFVVDPLSIDDL-SVLKPVF 71

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSS 120
           E+  +T V H S F+   L    + DI ++    T +  R  G    +L A+ E      
Sbjct: 72  EDPAITKVFHGSDFDIRSLDR--DFDIHVNNLFDTEIACRFLGIQKRSLAALLEKH---- 125

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                  +L     K         R         +    Y   DV    E+   L+    
Sbjct: 126 ------FDL--TLDKRFQKTDWSRRPLS------KEMIAYSVNDVAYLLELSDILKKRLE 171

Query: 181 KEQELWYLDQTIN 193
            E  L + ++   
Sbjct: 172 DEGRLAWAEEEFE 184


>gi|6324574|ref|NP_014643.1| Rrp6p [Saccharomyces cerevisiae S288c]
 gi|14195186|sp|Q12149|RRP6_YEAST RecName: Full=Exosome complex exonuclease RRP6; AltName:
           Full=Ribosomal RNA-processing protein 6
 gi|1150996|gb|AAC49480.1| hypothetical protein UNC733 [Saccharomyces cerevisiae]
 gi|1420088|emb|CAA99189.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814890|tpg|DAA10783.1| TPA: Rrp6p [Saccharomyces cerevisiae S288c]
          Length = 733

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 56/199 (28%), Gaps = 34/199 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEA 60
             + +D E              Y     ++        +    L D +       +L E 
Sbjct: 233 KEIAVDLE-----------HHDYRSYYGIVCLMQISTRERD-YLVDTLKLRENLHILNEV 280

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119
             N  +  V H ++ +   L+      + +     T   +++ GLP  +L  + E    +
Sbjct: 281 FTNPSIVKVFHGAFMDIIWLQRDLG--LYVVGLFDTYHASKAIGLPRHSLAYLLE--NFA 336

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +L     +  +                     Y + D      I+ +L    
Sbjct: 337 NFKTSKKYQLADWRIRPLSK----------------PMTAYARADTHFLLNIYDQLRNKL 380

Query: 180 SKEQELWYLDQTINDRGYC 198
            +  +L  +     +    
Sbjct: 381 IESNKLAGVLYESRNVAKR 399


>gi|321470528|gb|EFX81504.1| hypothetical protein DAPPUDRAFT_303477 [Daphnia pulex]
          Length = 812

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 36/232 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKE 59
             + +D E          G+     +  V L   G     + ++D +  P +     L  
Sbjct: 362 KVVSLDLE----------GVNVGGNNGEVTLAVIGLPSGVIYIFDLITCPAIMSQGMLAN 411

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-----------PSA 108
            + + ++  V H+   +   L      ++ +     T        L            ++
Sbjct: 412 LIISKEIVKVCHDCKNDSAALN--LGWNVKLENVFDTQAAHAVVQLQETGRAVHKVKTTS 469

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT-V 167
           L A+ E   L +   +E  + I             D+     R   R    Y   DV  +
Sbjct: 470 LNAMCENYDLPTNPFKELVKTI----------YKRDQRFWARRPLTRDMILYAAYDVMPL 519

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
              ++  L      E      +    +    +         +   +E   L+
Sbjct: 520 VPHLYDLLNNTVKPEFRPLLEELCAENLLALLQPDEVKRSKKERKMEMEVLE 571


>gi|16127833|ref|NP_422397.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|221236653|ref|YP_002519090.1| ribonuclease D [Caulobacter crescentus NA1000]
 gi|13425349|gb|AAK25565.1| ribonuclease D, putative [Caulobacter crescentus CB15]
 gi|220965826|gb|ACL97182.1| ribonuclease D [Caulobacter crescentus NA1000]
          Length = 205

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 46/181 (25%), Gaps = 33/181 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+ +   D   +       D    +            LK  L 
Sbjct: 20  IIAIDSET--------MGL-RLRRDPLCV-VQLSAGDGDAHVVRLSRPDYDCPNLKALLT 69

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           N  V  + H   F+  + +    +        CT + ++          LK V   L   
Sbjct: 70  NPKVLKLFHFGRFDIAMFELHLGVVTAP--VYCTKIASKLARTYTDRHGLKDVTREL--- 124

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +        +    + A      Y   DV     +  +L  + 
Sbjct: 125 ---------LGVELSKVQQSSDWGAPSLSVDQVA------YAASDVLHLHGLRLKLNAML 169

Query: 180 S 180
            
Sbjct: 170 E 170


>gi|229472249|gb|ACQ72639.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|242767043|ref|XP_002341292.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218724488|gb|EED23905.1| exosome complex exonuclease Rrp6, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 771

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 47/196 (23%), Gaps = 33/196 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E           +  Y     V L      D    +          Q L E  
Sbjct: 248 KEIAVDLE--------HHDVHTYYGL--VSLMQISTRDKDWVVDTLQPWREDLQRLNEVF 297

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120
            + ++  V H S  +   L+      + +     T   A + G P  +LK + E      
Sbjct: 298 TDPNILKVFHGSTMDIVWLQRDLG--LYVVSLFDTYHAAVALGFPKRSLKFLLEKYAHYE 355

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS- 179
                         K         R             +Y + D      I+  L     
Sbjct: 356 ------------ADKKYQMADWRLRPLT------DEMLKYARADTHYLLYIYDCLRNELL 397

Query: 180 -SKEQELWYLDQTIND 194
                +   +D  +  
Sbjct: 398 EKSTPKRNQIDYVLER 413


>gi|89052719|ref|YP_508170.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
 gi|88862268|gb|ABD53145.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
          Length = 203

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 45/165 (27%), Gaps = 16/165 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L            L   LE
Sbjct: 19  IVAIDCET--------MGLHPHRD--RLCVIQLSDGDGNAHLVQVAKGQTAAPNLCALLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKA-VGEALKL 118
           + +   + H   F+   +   F          CT + ++          LK  + E L +
Sbjct: 69  DPNTLKLFHFGRFDIAAMYHAFG--ALTAPVYCTKIASKLVRTYTDRHGLKNLLQELLGI 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
              K ++  +  A        +         H    +L     + 
Sbjct: 127 DISKQQQSSDWGADSLTEAQVDYAASDVLYLHGVKDKLDVMLARE 171


>gi|113970513|ref|YP_734306.1| ribonuclease D [Shewanella sp. MR-4]
 gi|113885197|gb|ABI39249.1| ribonuclease D [Shewanella sp. MR-4]
          Length = 384

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 75/271 (27%), Gaps = 45/271 (16%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           L +D E     T       K G+ +             +D   + L D V  P +     
Sbjct: 41  LVLDTEFVRTRTYY----AKLGLIQ------------AYDGKTLALIDPVALPDL-SAFW 83

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L+N ++  + H+   +  V                + + A   G+   L         
Sbjct: 84  SLLDNPNIIKLVHSCSEDLEVFAHYGQR--QPTPLFDSQIAASLCGMGHGL--------- 132

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                  G   +   C GE  +    R     R        Y   DV    +++ +L   
Sbjct: 133 -------GYAKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADK 185

Query: 179 SSKEQELWYLDQTIND----RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              +  L +L +        R    D+  A+   +            L+ L    +  + 
Sbjct: 186 LKAQDRLGWLYEEGERMTEGRLAPPDMDTAYLRVKNAFQLTENQLAYLKVLAKWRLEKAL 245

Query: 235 CLEKLKTWLFLETGL-HLEDLTETTCQRVLS 264
             +    ++  + GL  L      +   +L 
Sbjct: 246 ARDLALGFVIKDHGLIALAKKQPKSMSDLLK 276


>gi|72382995|ref|YP_292350.1| putative ribonuclease D [Prochlorococcus marinus str. NATL2A]
 gi|72002845|gb|AAZ58647.1| 3'-5' exonuclease [Prochlorococcus marinus str. NATL2A]
          Length = 214

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 63/206 (30%), Gaps = 28/206 (13%)

Query: 6   IDFET----RSP----IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
           ID ET    RS     +D    G+    +   + L     +   V       +      L
Sbjct: 18  IDSETEIALRSSSALAVDTEAMGLIHGRD--RLCLIQICDEFDNVICIRIERNQHSAPHL 75

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K  LEN  +  V H + F+   L +  N+++      CT + ++  G   +         
Sbjct: 76  KSILENKTIEKVFHFARFDVAALASNLNINVNP--IFCTKIASK-IGRTYS-----PRHG 127

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L        KE++      E  +     +     +  +    Y   DV        +LE 
Sbjct: 128 L--------KEVVLETVGVELDKQAQSSDWGKVGDLTQKQLIYASNDVRYLLGAKHKLEE 179

Query: 178 LSSKEQELWYLDQTINDRGYCVDVAL 203
           +    +E  +       +   V   L
Sbjct: 180 MLK--REERWGLAQKCFQCVPVLSEL 203


>gi|146292862|ref|YP_001183286.1| ribonuclease D [Shewanella putrefaciens CN-32]
 gi|145564552|gb|ABP75487.1| ribonuclease D [Shewanella putrefaciens CN-32]
          Length = 367

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 74/273 (27%), Gaps = 45/273 (16%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L +D E     T                   + L    +D   + L D V  P +   
Sbjct: 22  KILVLDTEFVRTRTYY---------------AKLGLIQ-AYDGKTLALIDPVALPDL-AK 64

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               L N ++  + H+   +  V                + + A   G+           
Sbjct: 65  FWALLANPNIIKLVHSCSEDLEVFAHYG--QCQPVPLFDSQIAASLCGMGH--------- 113

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +   K+ E        C GE  +    R     R        Y   DV    +++ +LE
Sbjct: 114 GVGYAKLVE-------TCLGEVIDKGESRTDWIRRPLTEAQLAYAANDVLYLHQLYPQLE 166

Query: 177 PLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD---VERTKLDQELESLTYGLVSS 232
               ++ +  W  ++ +      +D     T    V             L+ L    +  
Sbjct: 167 AKLVAQGRLNWLYEEGVRMTEGRLDTPDLDTAYLKVKNAFQLTEIQLAYLKVLAKWRLEK 226

Query: 233 SRCLEKLKTWLFLETGL-HLEDLTETTCQRVLS 264
           +   +    ++  + GL  L      +   +L 
Sbjct: 227 ALARDLALGFVIKDHGLIALAKKQPKSMTELLK 259


>gi|114047748|ref|YP_738298.1| ribonuclease D [Shewanella sp. MR-7]
 gi|113889190|gb|ABI43241.1| ribonuclease D [Shewanella sp. MR-7]
          Length = 384

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 75/271 (27%), Gaps = 45/271 (16%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           L +D E     T       K G+ +             +D   + L D V  P +     
Sbjct: 41  LVLDTEFVRTRTYY----AKLGLIQ------------AYDGKTLALIDPVALPDL-SAFW 83

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L+N ++  + H+   +  V                + + A   G+   L         
Sbjct: 84  SLLDNPNIIKLVHSCSEDLEVFAHYGQR--QPTPLFDSQIAASLCGMGHGL--------- 132

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                  G   +   C GE  +    R     R        Y   DV    +++ +L   
Sbjct: 133 -------GYAKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADK 185

Query: 179 SSKEQELWYLDQTIND----RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              +  L +L +        R    D+  A+   +            L+ L    +  + 
Sbjct: 186 LKAQDRLGWLYEEGERMTEGRLAPPDMDTAYLRVKNAFQLTENQLAYLKVLAKWRLEKAL 245

Query: 235 CLEKLKTWLFLETGL-HLEDLTETTCQRVLS 264
             +    ++  + GL  L      +   +L 
Sbjct: 246 ARDLALGFVIKDHGLIALAKKQPKSMSDLLK 276


>gi|294013278|ref|YP_003546738.1| ribonuclease D [Sphingobium japonicum UT26S]
 gi|292676608|dbj|BAI98126.1| ribonuclease D [Sphingobium japonicum UT26S]
          Length = 401

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 78/291 (26%), Gaps = 47/291 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL- 61
            + +D E              Y  D  + L     D+H     D     +    L + + 
Sbjct: 38  YIAVDTE--------FMRENSYWPD--LCLVQVA-DEHEAAAIDPKAPGLDLSPLLDLMV 86

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           +N DV  V H    +  ++          H    T + A + G       +GE +   + 
Sbjct: 87  DNEDVLKVFHAGGQDLEIIYNLTGKT--PHPLFDTQIAAMALG-------LGEQIGYGNL 137

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L  +  KG        R     +        Y  GDVT   +IF ++     +
Sbjct: 138 VDAW---LGVQLDKGARFTDWARRPLDKRQID------YAIGDVTYLIQIFPKMLEELRR 188

Query: 182 EQELWYLDQTINDRGYCVDVA---LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
                +LDQ +       +             +   +  +   L++L       +     
Sbjct: 189 TGRGDWLDQEMERISDPSNYENKPEEAWQRVRIASRKADVLGRLKALAAWREMEA----- 243

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
                  +  L    + +      L+      P+  +        S +   
Sbjct: 244 ------QDKNLPRGRIVKD---ETLADIASHPPRTQEDLGKVRGLSATWKT 285


>gi|189236910|ref|XP_968888.2| PREDICTED: similar to DNA polymerase subunit gamma 1, mitochondrial
           [Tribolium castaneum]
          Length = 1093

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 77/291 (26%), Gaps = 39/291 (13%)

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +   +R+ V A  G  ++ AD+   E  + + +           T       +  ++
Sbjct: 737 PDRVGSELRAMVQAPPGYNIIGADVDSQELWIASIIGDADRARLHGATPFGWMTLSGTKA 796

Query: 417 FNVAPA----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +        +     R   KV+  A  Y  G    +++      +++      K     
Sbjct: 797 DSTDMHSVTAKAVGISRDHAKVINYARIYGAGQNFAERLLKQFNPSMSDGEAKTKAAKMF 856

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
              +    +   +++       +  +       +                 +   FE+  
Sbjct: 857 ALTKGKRIY--RLKKEFVLEYYDQNYSHWQAFEI----------AKTWNRRIDDMFERPK 904

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR--SLVYRDVGNNRSYLNTTTRQLTRE 590
             G    A        +              +GR    +   + ++  +L          
Sbjct: 905 WVGGTESA----MFNRLESIATSQEPRTPFLNGRLSRALEPKLSSDDRFL---------- 950

Query: 591 YTYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                     +VQ+ + D   ++   M           L+ HDE+    P+
Sbjct: 951 ----PTRINWVVQSGAADFLHLMLVCMRWIMGENARFCLSFHDEVRYLVPE 997



 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 32/148 (21%)

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTL--------VLAR---------------S 102
             I+ HN  ++R  +K  + L+    R++ T+        + +                 
Sbjct: 235 KIIIGHNVSYDRARVKEQYWLNQTATRFLDTMSLHVCVSGLTSYQRAILKSGKIDEEDEI 294

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
               S+L ++ E       K+  G + +A+  +             + RE ++   +YC 
Sbjct: 295 WKQHSSLNSLNEVH-----KLYCGGKSVAKETRDLFVTGS----LNDIREEFQTVMKYCS 345

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQ 190
           GDV  T  +   L P+  +         
Sbjct: 346 GDVVATYSVLNELFPMFLERFPHPVTLA 373


>gi|229472495|gb|ACQ72762.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K    A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTATYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|229472365|gb|ACQ72697.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  ++ ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMIGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|119491955|ref|XP_001263472.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri
           NRRL 181]
 gi|119411632|gb|EAW21575.1| exosome complex exonuclease Rrp6, putative [Neosartorya fischeri
           NRRL 181]
          Length = 765

 Score = 61.7 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 41/178 (23%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           +  Y     V L      D    +          Q+L E  
Sbjct: 245 KEIAIDLE--------HHDVHSY--HGLVSLMQISTRDKDWVVDTLKPWREELQILNEVF 294

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H S  +   L+      + +     T   A +   P        +LK   Q
Sbjct: 295 ADPGILKVLHGSSMDIIWLQRDLG--LYVVGMFDTYHAACALNYPK------RSLKFLLQ 346

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           K    +              L                 Y + D      I+  L    
Sbjct: 347 KFVNFEADKRYQMADWRIRPLPSGMFD-----------YARSDTHYLLYIYDHLRNEL 393


>gi|229472577|gb|ACQ72803.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 64/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +  + M      +   +     +  VHDE
Sbjct: 160 SAGCVAKQWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|254466427|ref|ZP_05079838.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
 gi|206687335|gb|EDZ47817.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
          Length = 204

 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 35/181 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    +            L   LE
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVIQMSGGDGNAHIVQVEKGQTEAPNLCRMLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKL 118
           + +V  + H   F+   +   F          CT + +R          LK +  E L +
Sbjct: 69  DPNVLKLFHFGRFDIAAMYHAFG--ALAAPVYCTKIASRLVRTYTDRHGLKNLTQELLGI 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                       E      +Y   DV    ++ + L+  
Sbjct: 127 DISKQQQMSDWG-------------------AEELTEAQLDYAASDVLHLHKLREALDKR 167

Query: 179 S 179
            
Sbjct: 168 L 168


>gi|256811514|ref|YP_003128883.1| hypothetical protein Mefer_1580 [Methanocaldococcus fervens AG86]
 gi|256794714|gb|ACV25383.1| hypothetical protein Mefer_1580 [Methanocaldococcus fervens AG86]
          Length = 176

 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 25/194 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M    ID ET     +             ++       D  + L D   +  +     + 
Sbjct: 1   MVKAIIDIETTGLNPMEH----------RIVAIGVRIGDRTIILMD-ESEYYLLVNFWDT 49

Query: 61  LENTDVTIV-AHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +E   +  +   N  F+   LK       + I  +                  + + L  
Sbjct: 50  VEKEGIEKIIGFNIDFDWQFLKLRSLYHRLKIKHFR----------KYQGRVDLRQILNG 99

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           S  + ++G +L+             D N     E W+ F E  +GD    R+I + L+  
Sbjct: 100 SGGQYKKGTKLVDYCRFLGIDVPEDDANGSEIPELWKKFEE--EGDEEAKRKICEHLKRD 157

Query: 179 SSKEQELWYLDQTI 192
             +  EL+ +    
Sbjct: 158 LERTWELYKILVDC 171


>gi|229472261|gb|ACQ72645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472379|gb|ACQ72704.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472605|gb|ACQ72817.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIKAYQLAFIHDE 192


>gi|84500657|ref|ZP_00998906.1| exonuclease, putative [Oceanicola batsensis HTCC2597]
 gi|84391610|gb|EAQ03942.1| exonuclease, putative [Oceanicola batsensis HTCC2597]
          Length = 204

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 47/181 (25%), Gaps = 35/181 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    +            L   L 
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVVQMSGGDGDAHIVQVAIGQDSAPNLCAMLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVG-EALKL 118
           +  V  + H   F+   +   F          CT + +R          LK +  E L +
Sbjct: 69  DPKVLKLFHFGRFDIAAMYNAFG--ALAAPVYCTKIASRLVRTYTDRHGLKNLTQELLGI 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                       E      EY   DV     + + L+  
Sbjct: 127 DLSKQQQSSDWG-------------------AEELSAAQLEYAASDVLYLHRLREELDAR 167

Query: 179 S 179
            
Sbjct: 168 L 168


>gi|260428903|ref|ZP_05782880.1| 3'-5' exonuclease [Citreicella sp. SE45]
 gi|260419526|gb|EEX12779.1| 3'-5' exonuclease [Citreicella sp. SE45]
          Length = 204

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 47/181 (25%), Gaps = 33/181 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L            L   L 
Sbjct: 19  VVAIDCET--------MGLDPHRD--RLCVVQLSGGDGNAHLVQVARGQTEAPNLCRLLR 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           +  V  + H   F+   +   F          CT + +R          LKA+ + L   
Sbjct: 69  DETVLKLFHFGRFDIAAMYHAFG--ALAAPVYCTKIASRMVRTYTDRHGLKALTQEL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +        +    +        Y   DV    ++  RL  + 
Sbjct: 124 ---------LSVDISKQQQSSDWGAADLTAAQLD------YAASDVLYLHQLRDRLNGML 168

Query: 180 S 180
            
Sbjct: 169 E 169


>gi|255550866|ref|XP_002516481.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223544301|gb|EEF45822.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 342

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 23/191 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEAL 61
            +  D E    +DL + G         ++  AF      + L D      ++ +  K AL
Sbjct: 58  IIGFDCE---GVDLCRHGTLC------IMQIAF---PDAIFLVDATQGGEMLLKACKPAL 105

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL----K 117
           E++ +T V H+   +   L   F   I +H    T +             + +       
Sbjct: 106 ESSYITKVIHDCKRDSEAL--YFQFGIKLHNVFDTQIAYSLIEEQEGRTKLPDDYISFVG 163

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           L +     G   I+   K E    L    N   +R    L       DV     I+ ++ 
Sbjct: 164 LLADPRYCG---ISYLEKEEVRLLLRQDSNFWTYRPLSELMIRAAADDVRFLLYIYHKMI 220

Query: 177 PLSSKEQELWY 187
              ++    + 
Sbjct: 221 KKLNQRSLWYL 231


>gi|254450150|ref|ZP_05063587.1| 3'-5' exonuclease [Octadecabacter antarcticus 238]
 gi|198264556|gb|EDY88826.1| 3'-5' exonuclease [Octadecabacter antarcticus 238]
          Length = 203

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 46/173 (26%), Gaps = 35/173 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + L      D    L            L + L 
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCLVQLSGGDGNCHLIQVAGGQTTAPNLCKVLA 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKA-VGEALKL 118
           +  V  + H   F+   +   F          CT + ++          LK  + E L++
Sbjct: 69  DPQVLKLFHFGRFDIAAMLNAFG--TVTAPVYCTKIASKLIRTYTDRHGLKNLLQEFLRV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              K ++  +                      +        Y   DV    ++
Sbjct: 127 DISKFQQQSDW-------------GADQLSKAQLD------YAASDVLYLHKL 160


>gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 364

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 46/185 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D    + L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           KE  E+ D+  + H++  +  ++K  FN ++       T + A   G    S+LK + + 
Sbjct: 64  KEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTLLKE 121

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +  +K  +  +                RN+P      +    Y   DV    ++ + 
Sbjct: 122 ILDIEIEKESQFSDW---------------RNRPLT----QNQLNYAIKDVEYLIQLKEY 162

Query: 175 LEPLS 179
           L+   
Sbjct: 163 LQQQL 167


>gi|229472257|gb|ACQ72643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------AHYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIKAYQLAFIHDE 192


>gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 364

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 46/185 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D    + L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           KE  E+ D+  + H++  +  ++K  FN ++       T + A   G    S+LK + + 
Sbjct: 64  KEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTLLKE 121

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +  +K  +  +                RN+P      +    Y   DV    ++ + 
Sbjct: 122 ILDIEIEKESQFSDW---------------RNRPLT----QNQLNYAIKDVEYLIQLKEY 162

Query: 175 LEPLS 179
           L+   
Sbjct: 163 LQQQL 167


>gi|229472363|gb|ACQ72696.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 64/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+  A                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|229472273|gb|ACQ72651.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+  A                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              + +++A+      + +L   +    E               
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|121705450|ref|XP_001270988.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus
           NRRL 1]
 gi|119399134|gb|EAW09562.1| exosome complex exonuclease Rrp6, putative [Aspergillus clavatus
           NRRL 1]
          Length = 778

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 45/195 (23%), Gaps = 31/195 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           +  Y     V L      D    +          Q+L +  
Sbjct: 250 KEIAIDLE--------HHDMHSY--HGLVSLMQISTRDKDWVVDTLKPWREDLQILNDVF 299

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H S  +   L+      + +     T   A +   P        +LK   Q
Sbjct: 300 ADPAILKVLHGSSMDIIWLQRDLG--LYVVGMFDTYHAACALNYPK------RSLKFLLQ 351

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-- 179
           K    +              L                 Y + D      I+  L      
Sbjct: 352 KFVNFEADKRYQMADWRIRPLPSGMFD-----------YARSDTHYLLYIYDHLRNELLE 400

Query: 180 SKEQELWYLDQTIND 194
           +   +   +D     
Sbjct: 401 NSTPDHSLIDYVSEQ 415


>gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1]
          Length = 364

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 46/185 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D    + L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           KE  E+ D+  + H++  +  ++K  FN ++       T + A   G    S+LK + + 
Sbjct: 64  KEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTLLKE 121

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +  +K  +  +                RN+P      +    Y   DV    ++ + 
Sbjct: 122 ILDIEIEKESQFSDW---------------RNRPLT----QNQLNYAIKDVEYLIQLKEY 162

Query: 175 LEPLS 179
           L+   
Sbjct: 163 LQQQL 167


>gi|229472245|gb|ACQ72637.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+  A                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              + +++A+      + +L   +    E               
Sbjct: 104 ----------------DKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|148237165|ref|NP_001084822.1| exosome component 10 [Xenopus laevis]
 gi|47124776|gb|AAH70757.1| MGC83774 protein [Xenopus laevis]
          Length = 883

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+  N  +  V H +
Sbjct: 308 VDLEHHSYRSFLGLTCLMQISTRTED---YIIDVLELRSNLYILNESFTNPSIIKVFHGA 364

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F L I       T   AR   L   +L  +      + S K  +  +   
Sbjct: 365 DSDIEWLQKDFGLYI--VNMFDTHQAARILNLGRHSLDHLLRLYCNVESDKRYQLADW-- 420

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQ 190
                        R  P          EY + D      I+ ++   L         L Q
Sbjct: 421 -----------RIRPLP------EEMLEYARVDTHYLLYIYDKMRIALLDAANGQPNLLQ 463

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +     L    +       ++ + L
Sbjct: 464 LVWQRSKDICLKRFTKLIFTEESYLDLYQKQKKHL 498


>gi|255934162|ref|XP_002558362.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582981|emb|CAP81189.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 756

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 49/180 (27%), Gaps = 33/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           +  Y     V L      D    +          Q+L E  
Sbjct: 242 KEIAIDLE--------HHDVHSY--HGLVSLMQISTRDKDWVVDTLQPWREDLQMLNEVF 291

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK-AVGEALKLS 119
            +  +  V H S  +   L+      + +     T   A + G P  +LK  + + +   
Sbjct: 292 ADPKILKVLHGSTMDIIWLQRDLG--LYVVGMFDTFHAASALGFPKRSLKFLLSKFVNFE 349

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R  P          +Y + D      I+ RL    
Sbjct: 350 ADKRYQTADW-------------RARPLPPA------MFDYARSDTHYLLYIYDRLRNDL 390


>gi|229472271|gb|ACQ72650.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+  A                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              + +++A+      + +L   +    E               
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIKAYQLAFIHDE 192


>gi|159127645|gb|EDP52760.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
           A1163]
          Length = 764

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 40/178 (22%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           +  Y     V L      D    +          Q+L E  
Sbjct: 245 KEIAIDLE--------HHDVHSY--HGLVSLMQISTRDKDWVVDTLKPWREELQILNEVF 294

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H S  +   L+      + +     T   A +   P        +LK    
Sbjct: 295 ADPGILKVLHGSSMDIIWLQRDLG--LYVVGMFDTYHAACALNYPK------RSLKFLLH 346

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           K    +              L                 Y + D      I+  L    
Sbjct: 347 KFVNFEADKRYQMADWRIRPLPSGMFD-----------YARSDTHYLLYIYDHLRNEL 393


>gi|70999828|ref|XP_754631.1| exosome complex exonuclease Rrp6 [Aspergillus fumigatus Af293]
 gi|66852268|gb|EAL92593.1| exosome complex exonuclease Rrp6, putative [Aspergillus fumigatus
           Af293]
          Length = 764

 Score = 61.3 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 40/178 (22%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           +  Y     V L      D    +          Q+L E  
Sbjct: 245 KEIAIDLE--------HHDVHSY--HGLVSLMQISTRDKDWVVDTLKPWREELQILNEVF 294

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H S  +   L+      + +     T   A +   P        +LK    
Sbjct: 295 ADPGILKVLHGSSMDIIWLQRDLG--LYVVGMFDTYHAACALNYPK------RSLKFLLH 346

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           K    +              L                 Y + D      I+  L    
Sbjct: 347 KFVNFEADKRYQMADWRIRPLPSGMFD-----------YARSDTHYLLYIYDHLRNEL 393


>gi|229472343|gb|ACQ72686.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472583|gb|ACQ72806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+  A                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              + +++A+      + +L   +    E               
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella tularensis subsp. novicida U112]
 gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
 gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG]
 gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112]
 gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
 gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG]
          Length = 364

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 46/185 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D    + L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLEDLEF-KKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           KE  E+ D+  + H++  +  ++K  FN ++       T + A   G    S+LK + + 
Sbjct: 64  KEIFEDKDIIKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTLLKE 121

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +  +K  +  +                RN+P      +    Y   DV    ++ + 
Sbjct: 122 ILDIEIEKESQFSDW---------------RNRPLT----QNQLNYAIKDVEYLIQLKEY 162

Query: 175 LEPLS 179
           L+   
Sbjct: 163 LQQQL 167


>gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS]
 gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|167009819|ref|ZP_02274750.1| ribonuclease III [Francisella tularensis subsp. holarctica FSC200]
 gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
 gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS]
 gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
 gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
          Length = 364

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 46/185 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D    + L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           KE  E+ D+  + H++  +  ++K  FN ++       T + A   G    S+LK + + 
Sbjct: 64  KEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTLLKE 121

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +  +K  +  +                RN+P      +    Y   DV    ++ + 
Sbjct: 122 ILDIEIEKESQFSDW---------------RNRPLT----QNQLNYAIKDVEYLIQLKEY 162

Query: 175 LEPLS 179
           L+   
Sbjct: 163 LQQQL 167


>gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
 gi|295313032|ref|ZP_06803730.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
 gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 363

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 46/185 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D    + L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           KE  E+ D+  + H++  +  ++K  FN ++       T + A   G    S+LK + + 
Sbjct: 64  KEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTLLKE 121

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +  +K  +  +                RN+P      +    Y   DV    ++ + 
Sbjct: 122 ILDIEIEKESQFSDW---------------RNRPLT----QNQLNYAIKDVEYLIQLKEY 162

Query: 175 LEPLS 179
           L+   
Sbjct: 163 LQQQL 167


>gi|123969324|ref|YP_001010182.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601]
 gi|123199434|gb|ABM71075.1| putative ribonuclease D [Prochlorococcus marinus str. AS9601]
          Length = 211

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 61/203 (30%), Gaps = 26/203 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E          G+    +   + L     +           +      LK  LE
Sbjct: 28  YLAIDTE--------AMGLIHGRD--RLCLVQICNEFKRTSCIKIELNTSSSPNLKALLE 77

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +T + H + F+   LK   NL+I      CT + ++          +          
Sbjct: 78  DDKITKIFHYARFDVAALK--CNLEINTKNIFCTKIASK----------LARTY----TN 121

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               K+LI      E  +     +  ++ +  +   +Y   DV    E   +L+ +  +E
Sbjct: 122 KHGLKDLINELLGIELDKSSQSSDWGSNEDLTKDQLDYAANDVRYLIEAMLKLKVILKRE 181

Query: 183 QELWYLDQTINDRGYCVDVALAH 205
                  +         D+ +  
Sbjct: 182 NRYELAQKCFETVSVHADLDILK 204


>gi|281341789|gb|EFB17373.1| hypothetical protein PANDA_008249 [Ailuropoda melanoleuca]
          Length = 1214

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/406 (11%), Positives = 101/406 (24%), Gaps = 56/406 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R           GR+   +   Q + 
Sbjct: 771  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRHPDY----DEEGRYGAILP--QVVT 824

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++     L       P     +   +++ V A  G  LV AD+   E  + A
Sbjct: 825  AGTITRRAVEPTW--LTARPDLPPLQPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAA 882

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 883  VLGDAHFARMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQP 942

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA---- 502
              +++       L       K        +    +    +       +      T     
Sbjct: 943  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGEWLVRELHLPVDRTEDGWV 1002

Query: 503  -CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              + ++K  R+        W +     E+    G       + +   +        L   
Sbjct: 1003 SLQDLRKIQREASR--KSRWKKWEVVAERAWMGGTESEMFNKLESIAMSDTPCTPVLGCR 1060

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRD---ILAEGMM 615
                                  +R L      G  +      +VQ+ + D   ++   M 
Sbjct: 1061 ---------------------ISRALEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMK 1099

Query: 616  NATKAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
               +         +++HDE+     + D + A+       +L   M
Sbjct: 1100 WLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1145


>gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549]
          Length = 364

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 46/185 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D    + L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           KE  E+ D+  + H++  +  ++K  FN ++       T + A   G    S+LK + + 
Sbjct: 64  KEIFEDKDIIKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTLLKE 121

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +  +K  +  +                RN+P      +    Y   DV    ++ + 
Sbjct: 122 ILDIEIEKESQFSDW---------------RNRPLT----QNQLNYAIKDVEYLIQLKEY 162

Query: 175 LEPLS 179
           L+   
Sbjct: 163 LQQQL 167


>gi|330993409|ref|ZP_08317344.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
 gi|329759439|gb|EGG75948.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
          Length = 215

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 35/182 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ--VLKEAL 61
           + +D ET         G+  + +   + L      D    L              L   L
Sbjct: 27  VAVDTET--------MGLNPHRD--RLCLVQLSAGDGQAHLVQVPPHATAAGFPNLVRVL 76

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKL 118
            +  V  + H + F+  +L+  FN+ +     ICT V ++          L  +   L  
Sbjct: 77  TDARVPKIMHFARFDVAILQHTFNVTVAP--CICTKVASKLVRTYTDRHGLANLCREL-- 132

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L     K +        +        R    Y   DV     +++RLE L
Sbjct: 133 ----------LGVELSKQQQSSDWGATDLT------REQLCYAASDVLYLHALWERLEAL 176

Query: 179 SS 180
             
Sbjct: 177 LH 178


>gi|297463314|ref|XP_002702642.1| PREDICTED: polymerase (DNA directed), gamma [Bos taurus]
 gi|297487953|ref|XP_002696610.1| PREDICTED: polymerase (DNA directed), gamma [Bos taurus]
 gi|296475559|gb|DAA17674.1| polymerase (DNA directed), gamma [Bos taurus]
          Length = 1223

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/406 (11%), Positives = 104/406 (25%), Gaps = 60/406 (14%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R       A+           PQ + 
Sbjct: 777  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRH------ANYDEEGRYGAILPQVVT 830

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 831  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAA 884

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K++     Y  G  
Sbjct: 885  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIINYGRIYGAGQP 944

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA---- 502
              +++       L       K        +    +    +       ++     T     
Sbjct: 945  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGEWLVKELDLPVERTEDGWV 1004

Query: 503  -CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              + ++K  R+        W +     ++    G       + +            L   
Sbjct: 1005 SLKDLRKIQREASK--KSRWKKWEVVAQRAWMGGTESEMFNKLESIATSDIPRTPVLGCR 1062

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRD---ILAEGMM 615
                                  +R L      G  +      +VQ+ + D   ++   M 
Sbjct: 1063 ---------------------ISRALEPCAVRGEFMTSRVNWVVQSSAVDYLHLMLVAMK 1101

Query: 616  NATKAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
               +         +++HDE+     + D + A+       +L   M
Sbjct: 1102 WLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1147


>gi|229472541|gb|ACQ72785.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGIGRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|227489383|ref|ZP_03919699.1| hypothetical protein HMPREF0294_2533 [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227090561|gb|EEI25873.1| hypothetical protein HMPREF0294_2533 [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 60

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 30/43 (69%)

Query: 589 REYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDE 631
           R  TYGGKL ENIVQAV+RD+L   M    +AG+ IV+ V DE
Sbjct: 4   RLETYGGKLVENIVQAVARDLLVRAMTLVAQAGHKIVMHVRDE 46


>gi|87300944|ref|ZP_01083786.1| putative ribonuclease D [Synechococcus sp. WH 5701]
 gi|87284815|gb|EAQ76767.1| putative ribonuclease D [Synechococcus sp. WH 5701]
          Length = 228

 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 45/162 (27%), Gaps = 26/162 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E          G+    +   + L         V              L+E +E+
Sbjct: 41  LAVDTE--------AMGLVHGRD--RLCLVQIADHLDNVCCIRIARGQQEAPRLRELMES 90

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  V H + F+   L     L I +    CT V +R     S+   +           
Sbjct: 91  PAIEKVFHFARFDLAAL--GEGLGIAVAPLFCTKVASRLARTYSSRHGL----------- 137

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              KE++      E  +     +     E       Y   DV
Sbjct: 138 ---KEVVQELVGVELDKQSQSSDWGRVEELGEAQLVYAANDV 176


>gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548]
 gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548]
          Length = 364

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 46/185 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D    + L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           KE  E+ D+  + H++  +  ++K  FN ++       T + A   G    S+LK + + 
Sbjct: 64  KEIFEDKDIIKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTLLKE 121

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +  +K  +  +                RN+P      +    Y   DV    ++ + 
Sbjct: 122 ILDIEIEKESQFSDW---------------RNRPLT----QNQLNYAIKDVEYLIQLKEY 162

Query: 175 LEPLS 179
           L+   
Sbjct: 163 LQQQL 167


>gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 233

 Score = 60.9 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 46/161 (28%), Gaps = 36/161 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-----------------------AFGF 37
           M  +  D ET     L      +  E   V L                        A   
Sbjct: 1   MREIVFDTETTGLERLE----DRVIEIGGVELINKFPTGRTFHKYINPQGRQVHAEALAV 56

Query: 38  DD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                 +L D      +     E        +VAHN+ F+       L      +I + R
Sbjct: 57  HGISNEQLLDKPTFAEILDEFLEFF--DGAKLVAHNAMFDLGFINAELARLGQAEIQVER 114

Query: 93  WICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
            + TL LAR      P++L A+ +   + +        L+ 
Sbjct: 115 VVDTLALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLD 155


>gi|229472339|gb|ACQ72684.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 64/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYEGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +  + M      +   +     +  +HDE
Sbjct: 160 SAGCVAKQWMVHTHDVIKLNQIKAYQLAFIHDE 192


>gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
 gi|224456967|ref|ZP_03665440.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370381|ref|ZP_04986386.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
 gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
          Length = 364

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 46/185 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D    + L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           KE  E+ D+  + H++  +  ++K  FN ++       T + A   G    S+LK + + 
Sbjct: 64  KEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTLLKE 121

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +  +K  +  +                RN+P      +    Y   DV    ++ + 
Sbjct: 122 ILDIEIEKESQFSDW---------------RNRPLT----QNQLNYAIKDVEYLIQLKEY 162

Query: 175 LEPLS 179
           L+   
Sbjct: 163 LQQQL 167


>gi|270006334|gb|EFA02782.1| hypothetical protein TcasGA2_TC008519 [Tribolium castaneum]
          Length = 1050

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 77/291 (26%), Gaps = 39/291 (13%)

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              +   +R+ V A  G  ++ AD+   E  + + +           T       +  ++
Sbjct: 694 PDRVGSELRAMVQAPPGYNIIGADVDSQELWIASIIGDADRARLHGATPFGWMTLSGTKA 753

Query: 417 FNVAPA----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
            +        +     R   KV+  A  Y  G    +++      +++      K     
Sbjct: 754 DSTDMHSVTAKAVGISRDHAKVINYARIYGAGQNFAERLLKQFNPSMSDGEAKTKAAKMF 813

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
              +    +   +++       +  +       +                 +   FE+  
Sbjct: 814 ALTKGKRIY--RLKKEFVLEYYDQNYSHWQAFEI----------AKTWNRRIDDMFERPK 861

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR--SLVYRDVGNNRSYLNTTTRQLTRE 590
             G    A        +              +GR    +   + ++  +L          
Sbjct: 862 WVGGTESA----MFNRLESIATSQEPRTPFLNGRLSRALEPKLSSDDRFL---------- 907

Query: 591 YTYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPD 638
                     +VQ+ + D   ++   M           L+ HDE+    P+
Sbjct: 908 ----PTRINWVVQSGAADFLHLMLVCMRWIMGENARFCLSFHDEVRYLVPE 954



 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 32/148 (21%)

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTL--------VLAR---------------S 102
             I+ HN  ++R  +K  + L+    R++ T+        + +                 
Sbjct: 192 KIIIGHNVSYDRARVKEQYWLNQTATRFLDTMSLHVCVSGLTSYQRAILKSGKIDEEDEI 251

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
               S+L ++ E       K+  G + +A+  +             + RE ++   +YC 
Sbjct: 252 WKQHSSLNSLNEVH-----KLYCGGKSVAKETRDLFVTGS----LNDIREEFQTVMKYCS 302

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQ 190
           GDV  T  +   L P+  +         
Sbjct: 303 GDVVATYSVLNELFPMFLERFPHPVTLA 330


>gi|148807562|gb|ABR13583.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 35/172 (20%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTET----TCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             +    +++   L    G+  +  TE       ++VL       P+A  +    +   +
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGI--DVPEAKTI-YEYLMLQK 101

Query: 286 SAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH 345
               ++++ +     DGR+ G +    ++ TGR +        +P  S            
Sbjct: 102 -RAAQIDSWLTH-EKDGRVHGRV-ITNSAVTGRMTHHSPNLAQVPSVSAP---------- 148

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                              RS     EG KLV  D +G+E R+LA    ++ 
Sbjct: 149 --------------YGKECRSFWCVPEGHKLVGIDASGLELRMLAHYMRDER 186


>gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523]
          Length = 364

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 46/185 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D      L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQIATEN-EIFLIDTLKDLDF-SKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           K+  EN D+  + H++  +  ++K  FN ++       T + A   G    S+LK + + 
Sbjct: 64  KDIFENKDIQKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAAAFLGFQTQSSLKTLLKE 121

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +  +K  +  +                RN+P      +    Y   DV    ++ + 
Sbjct: 122 ILDIEMEKESQFSDW---------------RNRPLT----QKQLNYAIKDVEYLIQLKEY 162

Query: 175 LEPLS 179
           L+   
Sbjct: 163 LQQQL 167


>gi|254438617|ref|ZP_05052111.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307]
 gi|198254063|gb|EDY78377.1| 3'-5' exonuclease, putative [Octadecabacter antarcticus 307]
          Length = 203

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 48/183 (26%), Gaps = 29/183 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + L      D    L            L + L 
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCLIQLSSGDGNCHLIQISVGQTTAPNLCKVLA 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  + H   F+   +   F          CT + ++            +   L    
Sbjct: 69  DPQVLKLFHFGRFDIAAMLNAFG--TVTAPVYCTKIASKLIR------TYTDRHGL---- 116

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLF-GEYCKGDVTVTREIFKRLEPLSSK 181
               K L+  F         + +      E       +Y   DV    ++   L     +
Sbjct: 117 ----KNLLQEFL--RVDISKFQQQSDWGAETLSKAQIDYAASDVLYLHQLRDELNIRLVR 170

Query: 182 EQE 184
           E+ 
Sbjct: 171 ERR 173


>gi|115767336|ref|XP_001198019.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus
           purpuratus]
 gi|115963545|ref|XP_001176068.1| PREDICTED: similar to RE33408p, partial [Strongylocentrotus
           purpuratus]
          Length = 228

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 38/196 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKE 59
            + +D E          G+       C+ L      D    L+D   +P + +    LK+
Sbjct: 31  VIGLDCE----------GVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKK 80

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--------GLPSALKA 111
            LE+  +  V H+   +   L       + +     T +  R+               KA
Sbjct: 81  ILEHNSILKVIHDCKSDTYGL--HHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFKA 138

Query: 112 VGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           + E L    + K ++       F K       + + +P           Y   D  +   
Sbjct: 139 LCELLGEGATHKDDD-------FVKKMLETPDFWKIRPLT----EEMIYYAASDA-LCLI 186

Query: 171 --IFKRLEPLSSKEQE 184
             I+ +   + +    
Sbjct: 187 PSIYLKFNGMLTPLWR 202


>gi|229472213|gb|ACQ72621.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKV---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIRLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|66394986|ref|YP_240958.1| ORF037 [Staphylococcus phage G1]
 gi|62637008|gb|AAX92119.1| ORF037 [Staphylococcus phage G1]
 gi|182627951|gb|ACB89113.1| gp ORF120 [Staphylococcus phage A5W]
          Length = 286

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 60/205 (29%), Gaps = 42/205 (20%)

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           ++     + +      +   A NF     E+    A ++    +  E + + + Q    V
Sbjct: 29  SIVYNKPVEEVTKEERQATKAVNFGLAFGESPFSFAGKNNMEVSEAEEIFEKYFQTKPSV 88

Query: 518 SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNR 577
               + +H+  +Q    G        R                            + + +
Sbjct: 89  KTSIDNVHEFVQQY---GYVDTMHGHRRF--------------------------IRSAQ 119

Query: 578 SYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           S       +  R+          I+Q     +    +      + +      ++ TVHD 
Sbjct: 120 STDKKIKNEGLRQS------FNTIIQGSGSFLTNMSLTYLDDFIQSRNLKSKVIATVHDS 173

Query: 632 IVCETPDTDEFNASML-YHLMTSNP 655
           I+ + P  +    + +  H+M + P
Sbjct: 174 ILIDCPPEEAKIMAKVTIHIMENLP 198



 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
            R++     +   L++F  GED++  T +  +N    +VTK++R   K +   L +    
Sbjct: 1   MRIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGESP 60

Query: 446 KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
            +F         N+             +     +     + E   ++   D   G    R
Sbjct: 61  FSFAGKN-----NMEVSEAEEIFEKYFQTKPSVKTSIDNVHEFVQQYGYVDTMHG--HRR 113

Query: 506 VKKAWRQKHSRVSE 519
             ++ +    ++  
Sbjct: 114 FIRSAQSTDKKIKN 127


>gi|229472439|gb|ACQ72734.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L                         
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLPEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|84514850|ref|ZP_01002213.1| exonuclease, putative [Loktanella vestfoldensis SKA53]
 gi|84511009|gb|EAQ07463.1| exonuclease, putative [Loktanella vestfoldensis SKA53]
          Length = 203

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 45/166 (27%), Gaps = 16/166 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + L      D    L            L   L 
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCLIQMSGGDGDCHLVQVSKGQAGAPNLCAMLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEA-LKL 118
           +  V  + H   F+   L   F +        CT + ++          LK + +  L +
Sbjct: 69  DPAVLKLFHFGRFDIAALLNAFGVVTAP--VYCTKIASKLVRTYTDRHGLKVLLQDMLGI 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
              K ++  +  A        +         H+          + D
Sbjct: 127 DISKHQQQSDWGAPKLTPAQLDYAASDVLYLHQLKAAFDVLLQRED 172


>gi|146306804|ref|YP_001187269.1| ribonuclease D [Pseudomonas mendocina ymp]
 gi|145575005|gb|ABP84537.1| ribonuclease D [Pseudomonas mendocina ymp]
          Length = 377

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 74/271 (27%), Gaps = 33/271 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E           +  +     ++  +         L D +      + L E L+ 
Sbjct: 27  VALDTE--------FMRVDTFYPIAGLLQVS---GGDKAYLIDPLCIDD-WRPLAELLQA 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             V  V H+   +  V        +P+     T V A    L  ++              
Sbjct: 75  QTVVKVLHSCSEDLEVFLRLTG-SLPV-PLFDTQVAAGYLNLGFSMG------------- 119

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L+      E  +     +      +      Y   DV    E+++ L    S E+
Sbjct: 120 --YSRLVQTLLGIELPKGETRSDWLQRPLS-ATQISYAAEDVLHLVEVYQALTQRLSAEK 176

Query: 184 ELWYLDQTINDRGYC---VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
             W L+            VD        ++      +    L +L       +R   + +
Sbjct: 177 HAWVLEDGAELVAALSREVDPDELWREAKLAWKLSRQQQAVLRALCAWRERQARARNQPR 236

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
             +  E  L     T+      L+  + + P
Sbjct: 237 NRILREHSLWPLARTQPDNLVALARIEDMHP 267


>gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1]
 gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
          Length = 242

 Score = 60.9 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 51/176 (28%), Gaps = 29/176 (16%)

Query: 1   MATLFIDFETRSPID----------------LTKCGICKYAEDVCVILFAFGFDDHPVEL 44
           M  +  D ET                             Y  +      +   D   V  
Sbjct: 1   MREIIFDTETTGLDPREDRVIELGCVELANRFPTGRTLHYFINPQ--GRSVHPDAQAVHG 58

Query: 45  W---DCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTV----LKACFNLDIPIHRWICT 96
               D    PV  ++L E LE      +VAHN+ F+        +      I   R I T
Sbjct: 59  ISDADLAGKPVFAEILDEFLEFIDGAKLVAHNANFDIGFINAEFQRVGQPYIDPARVIDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPN 149
           L +AR      P++L A+     + +  + + G  L A        E    +    
Sbjct: 119 LAIARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDAELLAEVYIELAGGKQASF 174


>gi|117920828|ref|YP_870020.1| ribonuclease D [Shewanella sp. ANA-3]
 gi|117613160|gb|ABK48614.1| ribonuclease D [Shewanella sp. ANA-3]
          Length = 388

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 80/283 (28%), Gaps = 46/283 (16%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           L +D E     T       K G+ +             +D   + L D V  P +     
Sbjct: 45  LVLDTEFVRTRTYY----AKLGLIQ------------AYDGKTLALIDPVALPDL-SAFW 87

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L+N ++  + H+   +  V                + + A   G+   L         
Sbjct: 88  SLLDNPNIIKLVHSCSEDLEVFAHYGQR--QPTPLFDSQIAASLCGMGHGL--------- 136

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                  G   +   C GE  +    R     R        Y   DV    +++ +L   
Sbjct: 137 -------GYAKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADK 189

Query: 179 SSKEQELWYLDQTIN-DRGYCV---DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              +  L +L +         +   D+  A+   +            L+ L    +  + 
Sbjct: 190 LKAQDRLGWLYEEGERMTEGRLATPDMDTAYLRVKNAFQLTEHQLAYLKVLAKWRLEKAL 249

Query: 235 CLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQV 276
             +    ++  + GL  L      +   +L     LT Q  ++
Sbjct: 250 ARDLALGFVIKDHGLIALAKKQPKSMGDLL-KLNDLTEQEKRI 291


>gi|115661808|ref|XP_001202523.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
 gi|115689950|ref|XP_001201160.1| PREDICTED: similar to RE33408p [Strongylocentrotus purpuratus]
          Length = 234

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 38/196 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKE 59
            + +D E          G+       C+ L      D    L+D   +P + +    LK+
Sbjct: 37  VIGLDCE----------GVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKK 86

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--------GLPSALKA 111
            LE+  +  V H+   +   L       + +     T +  R+               KA
Sbjct: 87  ILEHNSILKVIHDCKSDTYGL--HHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFKA 144

Query: 112 VGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           + E L    + K ++       F K       + + +P           Y   D  +   
Sbjct: 145 LCELLGEGATHKDDD-------FVKKMLETPDFWKIRPLT----EEMIYYAASDA-LCLI 192

Query: 171 --IFKRLEPLSSKEQE 184
             I+ +   + +    
Sbjct: 193 PSIYLKFNGMLTPLWR 208


>gi|103487824|ref|YP_617385.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256]
 gi|98977901|gb|ABF54052.1| 3'-5' exonuclease [Sphingopyxis alaskensis RB2256]
          Length = 205

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 28/177 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALE 62
           + +D ET     L             + L           L            VLK  L 
Sbjct: 20  VAVDTETMGLNPLRD----------RLCLVQISDGSGDEHLVRFRPGSSYDAPVLKAILA 69

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           + +   + H + F+   L+    +        CT + ++            +   L    
Sbjct: 70  DPERLKLFHFARFDIAALQQALGVV--TTPVYCTKIASKLVR------TYTDRHGL---- 117

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               KEL+      E  +     +     E      +Y   DV     + + L+   
Sbjct: 118 ----KELVRELLGQEVSKQQQSSDWG-AAELSEAQRDYAASDVRFLHAMKEILDARL 169


>gi|77457615|ref|YP_347120.1| ribonuclease D [Pseudomonas fluorescens Pf0-1]
 gi|77381618|gb|ABA73131.1| putative ribonuclease [Pseudomonas fluorescens Pf0-1]
          Length = 377

 Score = 60.9 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 68/271 (25%), Gaps = 33/271 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E           +  +     ++      D     L D +      Q L   LEN
Sbjct: 27  VALDTE--------FMRVDTFYPIAGLLQVG---DGKRAYLIDPLTI-NAWQPLAALLEN 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             V  V H    +  VL               T + A    L  ++              
Sbjct: 75  PAVLKVLHACSEDLEVLLRLTGSL--PAPLFDTQLAAAYLNLGFSMG------------- 119

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L+      E  +     +      +      Y   D     E+F +L P  S ++
Sbjct: 120 --YSRLVQEVLGIELPKGETRSDWLQRPLS-DTQISYAAEDAVHLAEVFVQLRPKLSDDK 176

Query: 184 ELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
             W L+             D    +   ++           L  L       +R  +  +
Sbjct: 177 FAWVLEDGAELVANLRRETDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARARDLPR 236

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
             +  E  L     T+      L   + + P
Sbjct: 237 NRIVREHSLWPLARTQPDNLSALGKIEDMHP 267


>gi|227545493|ref|ZP_03975542.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227184527|gb|EEI64598.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 101

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 484 WMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKR 543
            +       A +          + + WR     + + W ++ +A ++ I+          
Sbjct: 2   SIGALKAMGATKLGLTDDELPPLVQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTTHGM 61

Query: 544 RDVPLVYMKKDKNNLILMLPSGRSLVY--RDVGNNRSYLNTTT 584
           +             + L L SGR L Y    +G NR    + T
Sbjct: 62  K------FIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESIT 98


>gi|104783019|ref|YP_609517.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
 gi|95112006|emb|CAK16733.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
          Length = 377

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 75/278 (26%), Gaps = 47/278 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP----QVLKE 59
           + +D E           +  +     ++      D +   L D      +     Q L +
Sbjct: 27  VALDTE--------FMRVDTFYPKAGLVQIG---DGNQAFLID-----PLLISDWQPLAD 70

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEAL 116
            L+++ V  V H    +  VL               T + A    +  ++     V E L
Sbjct: 71  LLDDSGVVKVLHACSEDLEVLLRLTGKL--PQPLFDTQLAAGYLNIGFSMGYSRLVQEVL 128

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            L   K E   + + R                           Y   D     E+F  L 
Sbjct: 129 GLELPKGETRSDWLQRPLSETQVS-------------------YAAEDAVHLAELFSALR 169

Query: 177 PLSSKEQELWYLDQTINDRGYC---VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           P  S ++  W LD            VD    +   ++      +    L  L       +
Sbjct: 170 PRLSDDKFAWVLDDGAELVAALRREVDPETLYRDVKLAWKLGRQQLAVLRELCAWREREA 229

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           R  +  +  +  E  L     ++      L    ++ P
Sbjct: 230 RNRDVPRNRILKEHSLWPMAKSQPDSLPALGRIDEMHP 267


>gi|78185488|ref|YP_377923.1| 3'-5' exonuclease [Synechococcus sp. CC9902]
 gi|78169782|gb|ABB26879.1| 3'-5' exonuclease [Synechococcus sp. CC9902]
          Length = 214

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 52/199 (26%), Gaps = 28/199 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  L +D E          G+    +   + L         V              L+  
Sbjct: 29  MPCLAVDTE--------AMGLIHGRD--RLCLVQIADAQDRVACVRIALGQSTAPNLQRL 78

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            E   V  V H + F+   L     LDI +    CT V +R  G             L  
Sbjct: 79  FEAPSVEKVFHFARFDVAALA--AGLDIAVQPLFCTKVGSR-LGRTYT-----PRHGL-- 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                 K+L+      E  +     +     E   +   Y   DV        +LE +  
Sbjct: 129 ------KDLVMELVGVELDKGAQSSDWGRVDELTDVQLAYAANDVRYLLPARNKLETML- 181

Query: 181 KEQELWYLDQTINDRGYCV 199
             +E  +           V
Sbjct: 182 -RREGRWELAQRCFACIPV 199


>gi|330813574|ref|YP_004357813.1| ribonuclease D related protein [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486669|gb|AEA81074.1| ribonuclease D related protein [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 205

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 28/185 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E+             Y     + L      D  V +     +      L + L +
Sbjct: 22  VAIDAESLGLN---------YKGRDKLCLLQLCSGDDEVYIVQFDRNNYKSPNLCKILND 72

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            ++  +AH + FE  +LK   N  I      CT + ++          +G          
Sbjct: 73  NNILKIAHFARFEMGILKYYLNAKIE--NIYCTKIASK----------LGRTYTDKHGLY 120

Query: 124 EEGKELIA-RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           +  KEL+     K +       ++            +Y   DV    ++ ++L+ +  +E
Sbjct: 121 DITKELLNITLNKSQQSSDWGLKDLS------EEQKQYAALDVLYLHKLKEKLDLMLRRE 174

Query: 183 QELWY 187
           +    
Sbjct: 175 KRDQL 179


>gi|68490644|ref|XP_710869.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
 gi|46432124|gb|EAK91626.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
          Length = 786

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 54/198 (27%), Gaps = 34/198 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D E              Y     ++       +     + D +       VL E  
Sbjct: 253 EIAVDLE-----------HHDYRSYYGIVCLMQIS-NREQDWIIDTLALRDDLTVLNEVF 300

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
            + D+  V H ++ +   L+      + +     T   +R+ G P  +L  + E      
Sbjct: 301 ADPDIVKVFHGAFMDIIWLQRDLG--LYVVSLFDTFHASRALGFPRFSLAYLLEVYAHF- 357

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +L     +  +                     Y + D      I+ +L+    
Sbjct: 358 -KTSKQYQLADWRIRPLS----------------PPMLAYARSDTHFLLFIYDQLKNKLI 400

Query: 181 KEQELWYLDQTINDRGYC 198
             ++L  +          
Sbjct: 401 DAEKLSQVLYDSRQVAKR 418


>gi|255730563|ref|XP_002550206.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132163|gb|EER31721.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 786

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 54/202 (26%), Gaps = 42/202 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T   I               V L      D    + D +        L
Sbjct: 253 EIAVDLEHHDFRTYYGI---------------VCLMQISNRDQD-WIIDTLALRDELTEL 296

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL 116
            E   N ++  V H ++ +   L+    L I       T   +R+ GL   +L  + E  
Sbjct: 297 NEVFTNPNIVKVFHGAFMDIIWLQRDLGLYI--VSLFDTYHASRALGLSRFSLAYLLEHY 354

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             +  K  +  +L     +  +                     Y + D      I+ +L+
Sbjct: 355 --AQFKTSKKYQLADWRIRPLSS----------------PMLAYARSDTHFLLYIYDQLK 396

Query: 177 PLSSKEQELWYLDQTINDRGYC 198
                  +L  +          
Sbjct: 397 NKLIDSDKLRGVLHDSRQVAKR 418


>gi|78780061|ref|YP_398173.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9312]
 gi|78713560|gb|ABB50737.1| 3'-5' exonuclease [Prochlorococcus marinus str. MIT 9312]
          Length = 211

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 58/203 (28%), Gaps = 26/203 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E          G+    +   + L     +           +      LK  LE
Sbjct: 28  YLAIDTE--------AMGLIHGRD--RLCLVQICNELRRTACIKIELNRSSAPNLKALLE 77

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +T + H + F+   LK    ++       CT + ++          +          
Sbjct: 78  DEKITKIFHYARFDVAALKCNLGINTK--NIFCTKIASK----------LARTY----TN 121

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               K+LI      E  +     +  +  +  +   +Y   DV    E   +L+ +  +E
Sbjct: 122 KHGLKDLINELLGVELDKSSQSSDWGSKEDLTKDQLDYASNDVRYLIEAMHKLKVILDRE 181

Query: 183 QELWYLDQTINDRGYCVDVALAH 205
                  +         D+ +  
Sbjct: 182 NRYELAQKCFKTVSVHADLDILK 204


>gi|304320447|ref|YP_003854090.1| putative DNA polymerase III subunit epsilon and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
 gi|303299349|gb|ADM08948.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Parvularcula bermudensis HTCC2503]
          Length = 245

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 46/157 (29%), Gaps = 48/157 (30%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD------HPVELWDCVHDPVMP 54
           M  +  D ET     L             V+      +                 +  MP
Sbjct: 1   MRQIVFDTETTGLDPLDGH---------RVVEIG-AVEMVNGALTGRTFHVYVNPERDMP 50

Query: 55  QVL-------------KEALENTDV-----------TIVAHNSYFERTVLKACFN-LDIP 89
           +               K   ++  +            +VAHN+ F+   ++   + + +P
Sbjct: 51  EAAYRVHKLSSQFLADKPIFKDPAIGQAFYQFCEGAVLVAHNASFDCKFMQHHLDEIGLP 110

Query: 90  -----IHRWICTLVLA--RSNGLPSALKAVGEALKLS 119
                    + TL +A  R  G PS+L A+ +   + 
Sbjct: 111 WAWGEPGDIVDTLQIARKRFPGSPSSLDALCQRFGID 147


>gi|257784443|ref|YP_003179660.1| ribonuclease D [Atopobium parvulum DSM 20469]
 gi|257472950|gb|ACV51069.1| ribonuclease D [Atopobium parvulum DSM 20469]
          Length = 379

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 75/270 (27%), Gaps = 45/270 (16%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            L +D E     T                   + L           +   + D + P  L
Sbjct: 24  ILAVDTEFLREKTYF---------------PKLCLVQVSTGSEIAAIDPLLIDDLTP--L 66

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           KE LEN ++  + H    +  VL     +D        T V A   G+   +   G    
Sbjct: 67  KELLENPEIVKILHACSQDLEVLL--EKMDCACAPVFDTQVAAAFLGMRQQVSYAGLVEN 124

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            ++ K+ + + L     +    E L                 Y + DV     I+ ++  
Sbjct: 125 FANVKLAKAESLTDWSKRPLDKEQLV----------------YAEDDVRYLPAIYNQMVE 168

Query: 178 LSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              K          +DQ  N   Y  D   A+   +       +       +       +
Sbjct: 169 KLIKLDRLSWLKPEMDQHTNIDQYRRDPYQAYLRLKRSGSLTRRQLAIAREVCAWREEIA 228

Query: 234 RCLE-KLKTWLFLETGLHLEDLTETTCQRV 262
              +   K  L  E  + +     TT  R+
Sbjct: 229 AKRDVPRKWVLSDELIIEICRRVPTTSDRL 258


>gi|329890110|ref|ZP_08268453.1| ribonuclease D [Brevundimonas diminuta ATCC 11568]
 gi|328845411|gb|EGF94975.1| ribonuclease D [Brevundimonas diminuta ATCC 11568]
          Length = 384

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 74/277 (26%), Gaps = 48/277 (17%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L           + D + + +  +  
Sbjct: 22  YITVDTEFMRETTYW---------------PKLCLIQAAASPTDAAIIDPMAEGLDLEPF 66

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            + L +  +  V H +  +  +      L         T V A + G             
Sbjct: 67  LDILRDESILKVFHAARQDVEIFNK---LGAMPRPLFDTQVAAMAAGFGD---------- 113

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                    + L+ +  + E  +     +      +      Y  GDVT    ++ +L  
Sbjct: 114 -----QVSYEALVRQMLRQELDKGSRFTDWARRPLSDAQLT-YALGDVTHLSALYPKLRD 167

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY------GLVS 231
                Q+   LD  +++ G   D AL  T  +             + L            
Sbjct: 168 RL---QKEGRLDWVMSEMGAVTDPALYDTSPENAWKRLKPKKFNAKYLAAFVAVAVWRER 224

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           +++  ++ +  +  +  +    +   T     +  + 
Sbjct: 225 AAQERDQPRGRILKDEAIDEIAVQAPTDPDAFNRLRS 261


>gi|229472243|gb|ACQ72636.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472435|gb|ACQ72732.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472469|gb|ACQ72749.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472473|gb|ACQ72751.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472481|gb|ACQ72755.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472489|gb|ACQ72759.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472497|gb|ACQ72763.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472575|gb|ACQ72802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771]
          Length = 238

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 39/178 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------- 52
           M  +  D ET    +     + +  E   + LF   F                       
Sbjct: 1   MREIIFDTETTGLDN----RMDRIIEIGGIELFNH-FPTGNTLHIYINPGDQKVHPDALA 55

Query: 53  -----------------MPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP---IH 91
                            + + +     +     +AHN+ F+   +      + +P     
Sbjct: 56  VHGITDEFLKDKKAFAEVAEEILAFFGDA--KWIAHNATFDMGFINAEFARIGLPPILPE 113

Query: 92  RWICTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           R + TL +AR      P++L A+     + +  + + G  L +        E +  R 
Sbjct: 114 RVVDTLSMARRKNPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQ 171


>gi|148807528|gb|ABR13567.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 27/168 (16%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +    +++   L    G+  +  TE     V     +                +    
Sbjct: 46  EFNVGSRKRIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKTTYEYLMLQKRAA 104

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           ++++ +     DGR+ G +   GA  TGR +        +P  S                
Sbjct: 105 QIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP-------------- 148

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                          RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 149 ----------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186


>gi|229472371|gb|ACQ72700.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 64/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+  A                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              + V++A+      + +L   +    E               
Sbjct: 105 -----------------KGKEVRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +  + M      +   +     +  VHDE
Sbjct: 160 SAGCVAKQWMVHTHNVIKLNQIEAYQLAFVHDE 192


>gi|229472453|gb|ACQ72741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAA------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|24374123|ref|NP_718166.1| ribonuclease D [Shewanella oneidensis MR-1]
 gi|24348616|gb|AAN55610.1|AE015699_8 ribonuclease D [Shewanella oneidensis MR-1]
          Length = 367

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 72/271 (26%), Gaps = 45/271 (16%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           L +D E     T                   + L    +D   + L D +  P +     
Sbjct: 24  LVLDTEFVRTRTYY---------------AKLGLIQ-AYDGKTLALIDPIALPDL-SAFW 66

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L+N ++  + H+   +  V                + + A   G+   L         
Sbjct: 67  ALLDNPNIIKLVHSCSEDLEVFAHYGQR--QPTPLFDSQIAASLCGMGHGL--------- 115

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                  G   +   C GE  +    R     R        Y   DV    +++ +L   
Sbjct: 116 -------GYAKLVETCLGEVIDKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEK 168

Query: 179 SSKEQELWYLDQTIN-DRGYCV---DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
              +  L +L +         +   D   A+   +            L+ L    +  + 
Sbjct: 169 LQTQDRLDWLYEEGERMTEGRLASPDAETAYLKVKNAFQLTEHQLAYLKVLAKWRLEKAL 228

Query: 235 CLEKLKTWLFLETGL-HLEDLTETTCQRVLS 264
             +    ++  + GL  L      +   +L 
Sbjct: 229 ARDLALGFVIKDHGLIALAKKQPKSMSDLLK 259


>gi|253990610|ref|YP_003041966.1| hypothetical protein PAU_03136 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253991041|ref|YP_003042397.1| hypothetical protein PAU_03567 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782060|emb|CAQ85224.1| conserved hypothetical protein [Photorhabdus asymbiotica]
 gi|253782491|emb|CAQ85655.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 228

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 51/174 (29%), Gaps = 38/174 (21%)

Query: 28  VCVILFAFGFDDHPVELW---DCVHDPV-MPQVLKEALE---NTDV----TIVAHNSY-F 75
             V   +   +D P   +   D  +    +   L   LE   +         + HN   F
Sbjct: 63  GQVCCVSVAINDEPTVTFFDEDWKNSEPAIIADLFHYLESHYDPSRQIPPVFIGHNIAGF 122

Query: 76  ERTVL-KACFNLDIPI------------HRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +   L +    L I               +   T+     +    +L  + + L L  + 
Sbjct: 123 DLRFLFQRAVVLGIKPPRFIPFGARSWDKQVFDTMTEWAGHNNRVSLCKLCQVLNLLQKG 182

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKRL 175
            E G++                +     R+       EYC GDV   R I KR+
Sbjct: 183 SETGED------------IDGSKVWDFVRDGKISTVAEYCNGDVERVRAIHKRM 224


>gi|114706065|ref|ZP_01438968.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
 gi|114538911|gb|EAU42032.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
          Length = 242

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 44/163 (26%), Gaps = 40/163 (24%)

Query: 1   MATLFIDFETRSPID--------------------------LTKCGICKYAEDVCVILFA 34
           M  +  D ET    +                          +   G         V   +
Sbjct: 1   MREIVFDTETTGLDNTIDRVIEIGGVELWNHIPTGKTYHQYIRPAGRKVDPAAFDVHGIS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK----ACFNLDIPI 90
                    L D      +         +    ++AHN+ F+   L        +  I  
Sbjct: 61  ------DEFLLDKPLFEEIADEFVAFFSDA--KLIAHNANFDIGFLNAELQRLRHPPIEP 112

Query: 91  HRWICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
              I TL +AR      P++L A+     + + K E+   L+ 
Sbjct: 113 SLVIDTLAMARRKFPMAPASLDALCSRFAVDTSKREKHGALLD 155


>gi|238879034|gb|EEQ42672.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 786

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 54/198 (27%), Gaps = 34/198 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D E              Y     ++       +     + D +       VL E  
Sbjct: 253 EIAVDLE-----------HHDYRSYYGIVCLMQIS-NREQDWIIDTLALRDDLTVLNEVF 300

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
            + D+  V H ++ +   L+      + +     T   +R+ G P  +L  + E      
Sbjct: 301 ADPDIVKVFHGAFMDIIWLQRDLG--LYVVSLFDTFHASRALGFPRFSLAYLLEVYAHF- 357

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +L     +  +                     Y + D      I+ +L+    
Sbjct: 358 -KTSKQYQLADWRIRPLS----------------PPMLAYARSDTHFLLFIYDQLKNKLI 400

Query: 181 KEQELWYLDQTINDRGYC 198
             ++L  +          
Sbjct: 401 DAEKLSQVLYDSRQVAKR 418


>gi|262194484|ref|YP_003265693.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
 gi|262077831|gb|ACY13800.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
          Length = 925

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 51/179 (28%), Gaps = 41/179 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           +D ET                D  + L      ++ V + D      +   + E L +  
Sbjct: 780 LDVETT-------------LFDRALCLVQLAAPEYTV-VIDARAVDDL-GPVSELLASRA 824

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-----GLPSALKAVGEALKLSS 120
           V  + HN+ FER+V +    L + I     TL ++R            L AV        
Sbjct: 825 VVKIIHNAQFERSVFRK---LGMDIENVFDTLKVSRRLRGRKREGGHGLGAVCAR----- 876

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  EL     K E       R     +        Y   D  V   + +R     
Sbjct: 877 -------ELGRELDKHEQRSDWTLRPLTQRQLD------YAALDAEVLLVLHERFTREL 922


>gi|229472589|gb|ACQ72809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+  A                     
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA------------------ 104

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              + +++A+      + +L   +    E               
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|83944955|ref|ZP_00957321.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851737|gb|EAP89592.1| DNA polymerase III, epsilon subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 236

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 31/178 (17%)

Query: 2   ATLFIDFETRSPID-----LTKCG------ICKYAEDVCVIL-----FAFGFDDHPVELW 45
             +  D ET          +T+ G      +    +D+ +++                 W
Sbjct: 4   REIIFDTETTGLDPRGGDRVTELGCVEVIDLIPTGKDLRILINPERDIPAEVTAVTGHTW 63

Query: 46  DCVHDP----VMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTL 97
           + + D      +     + +E++  T+VAHN+ F+       L+ C    IP  R+I T 
Sbjct: 64  EMLKDEPKFAEIVDQFLDFIEDS--TLVAHNAMFDMGFINMELERCGKPIIPKARFIDTA 121

Query: 98  VLAR--SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKPNH 150
            +AR    G P++L A+ +   +S     +   LI  +   E         +++    
Sbjct: 122 AIAREKFPGAPASLDALCKRFDVSLDSRTKHGALIDSYLLAEVYLELNGGREQSLSFT 179


>gi|229472269|gb|ACQ72649.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDIIKLNQIEAYQLAFIHDE 192


>gi|229472423|gb|ACQ72726.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 64/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +  + M      +   +     +  VHDE
Sbjct: 160 SAGVVAKQWMVHTHDVIKLNQIKAYQLAFVHDE 192


>gi|328541691|ref|YP_004301800.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326411443|gb|ADZ68506.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 240

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 32/148 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
           M  +  D ET            +  E   V LF                +  MP+     
Sbjct: 1   MREIAFDTETTGLDPRNG---DRLVEIGGVELFNH-VPTGNTYHVYINPERDMPEAAFNV 56

Query: 59  -----EALENT---------------DVTIVAHNSYFERTV----LKACFNLDIPIHRWI 94
                E L +                D  +V HN+ F+       L     L IP  + +
Sbjct: 57  HGLSAEFLADKPVFAEIVDEFLAFVGDARLVIHNAAFDMGFINMELSRAGRLPIPRTQVL 116

Query: 95  CTLVLARSNGL--PSALKAVGEALKLSS 120
            TL LAR      P++L A+     + +
Sbjct: 117 DTLELARRKHPMGPNSLDALCGRYGIDN 144


>gi|307943432|ref|ZP_07658776.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4]
 gi|307773062|gb|EFO32279.1| DNA polymerase III, epsilon subunit [Roseibium sp. TrichSKD4]
          Length = 239

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 45/159 (28%), Gaps = 32/159 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           M  +  D ET         G  +  E   V L+                   MP+     
Sbjct: 1   MREISFDTETTGLNP---RGGDRLVEIGGVELWNH-IPTGKSYHVYINPQRDMPEEAFRV 56

Query: 57  ------------LKEALENTDVTIVA------HNSYFERTV----LKACFNLDIPIHRWI 94
                       L + + +  +  V       HN+ F+       L+      I   + +
Sbjct: 57  HGLSEEFLSDKQLFDQVADEFLDFVGDATLVIHNAAFDMGFINMELERSGRRIISNDQVL 116

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL LAR        +L A+     + + K  +   L+ 
Sbjct: 117 DTLDLARRKHPTGPNSLDALCSRYGIDNSKRVKHGALLD 155


>gi|68490669|ref|XP_710857.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
 gi|46432110|gb|EAK91613.1| likely nuclear exosome component Rrp6p [Candida albicans SC5314]
          Length = 785

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 54/198 (27%), Gaps = 34/198 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D E              Y     ++       +     + D +       VL E  
Sbjct: 253 EIAVDLE-----------HHDYRSYYGIVCLMQIS-NREQDWIIDTLALRDDLTVLNEVF 300

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
            + D+  V H ++ +   L+      + +     T   +R+ G P  +L  + E      
Sbjct: 301 ADPDIVKVFHGAFMDIIWLQRDLG--LYVVSLFDTFHASRALGFPRFSLAYLLEVYAHF- 357

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +L     +  +                     Y + D      I+ +L+    
Sbjct: 358 -KTSKQYQLADWRIRPLS----------------PPMLAYARSDTHFLLFIYDQLKNKLI 400

Query: 181 KEQELWYLDQTINDRGYC 198
             ++L  +          
Sbjct: 401 DAEKLSQVLYDSRQVAKR 418


>gi|229472611|gb|ACQ72820.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 62/273 (22%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +    +    E               
Sbjct: 104 ----------------TEGKEIRQAYMDAIPGLEKRVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIKTYQLAFIHDE 192


>gi|229472527|gb|ACQ72778.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 63/275 (22%), Gaps = 99/275 (36%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    A+ G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFRATPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +    E             
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLEKLVTAVKSKAES------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            + L  GR                             K    ++
Sbjct: 134 ---------------GYIQLCDGRRCPVDGSH---------------------KALNYLL 157

Query: 603 QAVSRDILAEGM------MNATKAGYDIVLTVHDE 631
           Q  +  +  + M      +   +     +  +HDE
Sbjct: 158 QGSAGCVAKQWMVHTHNVIKLNQIEAYQLAFIHDE 192


>gi|254295485|ref|YP_003061508.1| DNA polymerase III subunit epsilon [Hirschia baltica ATCC 49814]
 gi|254044016|gb|ACT60811.1| DNA polymerase III, epsilon subunit [Hirschia baltica ATCC 49814]
          Length = 233

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 38/154 (24%)

Query: 1   MATLFIDFETRSP----------------IDLTKCGIC---------KYAEDV-CVILFA 34
           M  +  D ET                   +DL   G           + +ED   +    
Sbjct: 1   MREIVFDTETTGLSAKDGDRIIELGAVEIVDLLPTGREFHRLIYPERQVSEDTIRITGIT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPI 90
               D  ++      DP + +   + +E++   +VAHN+ F+R  L    +     D P 
Sbjct: 61  ----DEMLKGKPVFSDPSVYKEFLDFIEDS--PLVAHNAEFDRGFLNEEMRRVGGPDFPK 114

Query: 91  HRWICTLVLARSNGLPSA--LKAVGEALKLSSQK 122
            R + TL LAR     ++  L A+ +   +S  K
Sbjct: 115 ERCVDTLALAREKFPGASATLDALCKRFDISLAK 148


>gi|302381884|ref|YP_003817707.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264]
 gi|302192512|gb|ADL00084.1| 3'-5' exonuclease [Brevundimonas subvibrioides ATCC 15264]
          Length = 204

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 59/211 (27%), Gaps = 37/211 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D ET         G+ ++  D   +       D    +            LK  + 
Sbjct: 19  EVAVDSET--------MGL-RFRRDPLCV-VQLSSGDGDAHVVRLSRPDYDCPNLKRLMA 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           + DV  + H   F+  +++    ++       CT + ++          LK V   +  +
Sbjct: 69  DRDVLKIFHFGRFDIAMVELHLGVE--TGPVYCTKIASKLARTYTDRHGLKDVAREMAGI 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                       E  +   +Y   DV     I +RL  +
Sbjct: 127 DLSKAQQSSDWG-------------------AAELSQAQLDYAASDVLHLHVIMRRLNEM 167

Query: 179 S--SKEQELWYLDQTINDRGYCVDVALAHTL 207
                  EL             +D+     +
Sbjct: 168 LVREGRMELAQACFDFLPVRARLDLRGWDEM 198


>gi|310817096|ref|YP_003965060.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25]
 gi|308755831|gb|ADO43760.1| 3'-5' exonuclease [Ketogulonicigenium vulgare Y25]
          Length = 227

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 49/181 (27%), Gaps = 35/181 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + L      D    +            L   LE
Sbjct: 43  VIAIDCET--------MGLNPHRD--RLCLVQISGGDGNAHMIQISPGQRSAPNLARMLE 92

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           + ++  + H   F+   +   F          CT + ++          LK + + L  +
Sbjct: 93  DANILKLFHYGRFDIAAMYHAFGALAQP--VYCTKIASKMVRTYTERHGLKFLLQDLIGV 150

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +  A                           +Y   DV     +   L+ L
Sbjct: 151 DISKHQQQSDWGAASLTPAQ-------------------LDYAASDVLYLHRLRAHLDAL 191

Query: 179 S 179
            
Sbjct: 192 L 192


>gi|308270300|emb|CBX26912.1| hypothetical protein N47_A09410 [uncultured Desulfobacterium sp.]
          Length = 382

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 60/191 (31%), Gaps = 31/191 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             +  D E  S        +  + E   V L      +  + + D +    +  +LK   
Sbjct: 29  KKIGFDLEADS--------MHHFPE--KVCLLQVATKNC-IFVIDTIKLKEL-SLLKPIF 76

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            + ++T + H + ++   L   FN++I       + + +R  G+                
Sbjct: 77  ADNEITKIFHGADYDVRSLFRDFNIEIN--NLFDSELASRFLGV---------------- 118

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K    + +I         +    R+             Y   DV     +++ LE   + 
Sbjct: 119 KETGLEAVIRHRFNVYLEKKFTKRDWSKRPL-IDDMLHYAADDVRYLVPLYEILEKELND 177

Query: 182 EQELWYLDQTI 192
              L+++ +  
Sbjct: 178 IGRLFWVKEEC 188


>gi|259417301|ref|ZP_05741220.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B]
 gi|259346207|gb|EEW58021.1| 3'-5' exonuclease [Silicibacter sp. TrichCH4B]
          Length = 204

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 43/172 (25%), Gaps = 33/172 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L     D      L   L 
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVVQMSGGDGDAHLVQISKDQTEAPNLTSMLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           N DV  + H   F+   L   F          CT + +R          LK + + L   
Sbjct: 69  NPDVLKLFHYGRFDIAALYHRFG--ALTAPVYCTKIASRLVRTYTDRHGLKNLTQDL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                    L     K +             +        Y   DV     +
Sbjct: 124 ---------LGQDISKQQQMSDWGADTLTRAQMD------YAASDVLHLHRL 160


>gi|119511988|ref|ZP_01631084.1| hypothetical protein N9414_12428 [Nodularia spumigena CCY9414]
 gi|119463339|gb|EAW44280.1| hypothetical protein N9414_12428 [Nodularia spumigena CCY9414]
          Length = 871

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/459 (13%), Positives = 125/459 (27%), Gaps = 63/459 (13%)

Query: 2   ATLFIDFE----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            TL++D E    T     L+   +     D      +         L D +  P + +  
Sbjct: 21  KTLWLDTEIADFTTHYPRLSLIQVLADPTDST--GVS-------AYLLDVLDKPDLAEYF 71

Query: 58  K-EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
             + + N ++  V HN+ F+           +      CT  +AR        K   + L
Sbjct: 72  INQIMINPNIEKVFHNAGFDL----KYLGKKLA-QNITCTYQIAR--------KITRDRL 118

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K+S+ K++     +  F   +  E   D  K    +      +Y   D      + ++L 
Sbjct: 119 KVSNLKLKTLAAELCHFVNVDADEGSSDWGKRPLSDK---QVKYAAMDTVYLAAVHRKLL 175

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL-----TYGLVS 231
            +S     +  +   +N   + +     ++   +  V        L  L        +  
Sbjct: 176 EISE-PHAVANIFNMVNHISHPITAKSVNSPLNVTKVRIAFECARLFYLNHKFGDKAIFF 234

Query: 232 SSRC------LEKLKTWLFLETGLHLEDLT---ETTCQRVLSSNKKLTPQAIQVFNNRMR 282
                             F++  L         +   +++    ++++ Q  Q+F     
Sbjct: 235 PPNSATGIGNPFHKLADEFVKLALIEPRFKAVLKPAAEQL--KLEEVSSQMQQIFY---- 288

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEE-LDQ 341
                +     L  A N +     TL  +     G           + R   + E  +  
Sbjct: 289 ----QLEFFPYLQTATNKNPSHGQTLLQVWQGLQGLIK-RFAELLIINRQYCNAETVISN 343

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                  SI  D          VR           +V + A     ++ +   +     +
Sbjct: 344 TFISQEHSIEYDFTLPDGTQQLVRGEF------DCLVFNFAQNRLCMIEFKTYQPVDPSS 397

Query: 402 FETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALG 440
                 LY     +   V             K  + +  
Sbjct: 398 QLAQVSLYSYMLWQKKKVPVDSAVYCVLPEFKEYKYSWE 436


>gi|26991275|ref|NP_746700.1| ribonuclease D [Pseudomonas putida KT2440]
 gi|24986330|gb|AAN70164.1|AE016655_9 ribonuclease D [Pseudomonas putida KT2440]
          Length = 377

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 75/275 (27%), Gaps = 41/275 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  +     +I      D     L D  +     P  L + LE
Sbjct: 27  VAVDTE--------FMRVDTFYPKAGLIQIG---DGQRAFLIDPLLIGNWQP--LADLLE 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKLS 119
           ++ V  V H    +  VL               T + A    L  ++     V E L + 
Sbjct: 74  DSAVVKVLHACSEDLEVLLRLTGKL--PQPLFDTQLAAGYLNLGFSMGYSRLVQEVLGIE 131

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K E   + + R                           Y   D     E+F  L P  
Sbjct: 132 LPKGETRSDWLQRPLSETQVS-------------------YAAEDAVHLAELFTVLRPRL 172

Query: 180 SKEQELWYLDQTINDRGYC---VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           S ++  W L+            V+    +   ++      +    L  L       +R  
Sbjct: 173 SDDKYAWVLEDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNR 232

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  +  E  L     ++      L+   ++ P
Sbjct: 233 DVPRNRILKEHSLWPMAKSQPNNLSALAKIDEMHP 267


>gi|221127142|ref|XP_002166917.1| PREDICTED: similar to DNA polymerase gamma [Hydra magnipapillata]
          Length = 592

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 93/361 (25%), Gaps = 41/361 (11%)

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
           +GR R   Q       GR          LP+   +     + +     + ++       I
Sbjct: 180 NGRKRIMSQKTVWFDDGRGVI-------LPQVVTAGTVTRRSVEATWLTASN--PMFNRI 230

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEA--RVLAWMAGEQWKLKAFETGEDLYV--TTYARS 416
              ++S +    G  LV AD+   E     +   A       +            +    
Sbjct: 231 GSELKSLIRTPPGYVLVGADVDSQELWIASILGDAMFSNMHGSTALSWMTLQGKKSDRTD 290

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            +   A      R   KV      Y  G K   ++      N++      K        +
Sbjct: 291 LHSKTADTIGMSRDQAKVFNYGRIYGAGEKFAVRLLMQFNHNISLAQAEEKAAKLYATTK 350

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
             +++    +      +                    +  + EL               K
Sbjct: 351 GIKSYLLTEEGLRLSESYGIPTSQGTI---------SYINLKELLYLT-----------K 390

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                K   V   +    ++++   L S               +         +  Y   
Sbjct: 391 TSWENKELLVHKTWFGGSESDMFNKLESIAVSEEPRTPVLNCMITKALLPKYVQNHYMTS 450

Query: 597 LTENIVQAVSRD-------ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
               +VQ+ + D        +   ++          +++HDE+     + D++ A++   
Sbjct: 451 RVNWVVQSSAVDYLHLVLTCMK-WLIEKYDIDARFCISIHDEVRYIVHEKDKYRAALALQ 509

Query: 650 L 650
           +
Sbjct: 510 I 510


>gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 364

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 32/169 (18%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D    + L
Sbjct: 21  QIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KKL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           KE  E+ D+  + H++  +  ++K  FN ++       T + A   G    S+LK + + 
Sbjct: 64  KEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTLLKE 121

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            L +  +K  +  +   R                   E      EY + 
Sbjct: 122 ILDIEIEKESQFSDWRNRPLTQNQLNYSIK-----DVEYLIQLKEYLQQ 165


>gi|291279950|ref|YP_003496785.1| DEAD/DEAH box helicase domain protein [Deferribacter desulfuricans
           SSM1]
 gi|290754652|dbj|BAI81029.1| DEAD/DEAH box helicase domain protein [Deferribacter desulfuricans
           SSM1]
          Length = 927

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 27/197 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCV-ILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
             +  D ET+   D    G  K A  + + IL A+ + ++   ++D           K  
Sbjct: 747 DVIIFDIETKYSAD--DVGGWKNAHKMGIAILVAYSYKNNKYFIYD----EKNISDFKSL 800

Query: 61  LENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           L +    I+  N   F+  VL      D                     L  + E   ++
Sbjct: 801 L-DKSKVIIGFNIINFDLKVLTPYIKFDFKETYI---------------LDILTEIKNIT 844

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI--FKRLEP 177
            ++        +     ++   L                EYCK DV +T+ I  +     
Sbjct: 845 GRRFSLDNIASSTLNTKKSANGLQSIKW-FKEGKIDKIIEYCKKDVDITKSIFEYGIKHK 903

Query: 178 LSSKEQELWYLDQTIND 194
                 +   ++  +N 
Sbjct: 904 KIYCNLKDLKVEIPVNW 920


>gi|148546540|ref|YP_001266642.1| ribonuclease D [Pseudomonas putida F1]
 gi|148510598|gb|ABQ77458.1| ribonuclease D [Pseudomonas putida F1]
          Length = 377

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 75/275 (27%), Gaps = 41/275 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  +     +I      D     L D  +     P  L + LE
Sbjct: 27  VAVDTE--------FMRVDTFYPKAGLIQIG---DGQRAFLIDPLLIGNWQP--LADLLE 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKLS 119
           ++ V  V H    +  VL               T + A    L  ++     V E L + 
Sbjct: 74  DSGVVKVLHACSEDLEVLLRLTGKL--PQPLFDTQLAAGYLNLGFSMGYSRLVQEVLGIE 131

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K E   + + R                           Y   D     E+F  L P  
Sbjct: 132 LPKGETRSDWLQRPLSETQVS-------------------YAAEDAVHLAELFTVLRPRL 172

Query: 180 SKEQELWYLDQTINDRGYC---VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           S ++  W L+            V+    +   ++      +    L  L       +R  
Sbjct: 173 SDDKYAWVLEDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNR 232

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  +  E  L     ++      L+   ++ P
Sbjct: 233 DVPRNRILKEHSLWPMAKSQPNNLSALAKIDEMHP 267


>gi|330721714|gb|EGG99712.1| DNA polymerase I [gamma proteobacterium IMCC2047]
          Length = 51

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           + VHDE+V E  D+D    S  L   M+        +PL  E    + + 
Sbjct: 1   MQVHDELVLEVADSDVELVSQGLNQYMSETVK--LDVPLLVEVGVGENWG 48


>gi|119512751|ref|ZP_01631822.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
 gi|119462619|gb|EAW43585.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
          Length = 306

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 84/322 (26%), Gaps = 61/322 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-----DHPVELWDCVHDPVMPQV 56
            TL+ID E               + +  + L     D        V L D ++ P +   
Sbjct: 21  KTLWIDTE----------VADYKSRNPRLSLIQVLDDPTDMSGDRVNLLDVLNQPDVVGE 70

Query: 57  LKE-ALENTDVTIVAHNSYFERTVL--KACFNLDIPIHRWICTLVLA----RSN--GLPS 107
             E  + N ++  V HN+ ++   L  K   N+        CTL +A             
Sbjct: 71  FIEQIMINPEIEKVFHNANYDLKFLGKKRAKNIT-------CTLEIAQKIPYYILPLPNY 123

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF-GEYCKGDVT 166
            LK +  AL                  K E       R     +  +      Y      
Sbjct: 124 QLKTLATAL-----------CRFNYIDKQEQSSDWGRRPLTEGQIEYAYLDCIYLAQVHL 172

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
              E+     P     ++L  LD            +      Q++  E   L +  +   
Sbjct: 173 QLLELQVASNPDPK-TEDLTALDARY---------SELSENWQLLKSEFEHLQERFKKAM 222

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                    + KL ++      + L          ++   +              +  + 
Sbjct: 223 QAQNVMETSVCKLISYERQTVKVPLT--------ELVKLLQNQDVSLDFPITLTQKMQKD 274

Query: 287 AVLKLNTLVEAMNSDGRLRGTL 308
               L  L   +++    R + 
Sbjct: 275 LGDNLEKLAVDIDTTTSWRLST 296


>gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct]
          Length = 399

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 46/185 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     ++  + L D + D    + L
Sbjct: 47  QIAVDTEFYWMRTYY---------------PELCLVQLATEN-EIFLIDTLKDLEF-KKL 89

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEA 115
           KE  E+ D+  + H++  +  ++K  FN ++       T + A   G    S+LK + + 
Sbjct: 90  KEIFEDKDILKIIHSATNDIPIIKRFFNCEVN--NIFDTQLAATFLGFQTQSSLKTLLKE 147

Query: 116 -LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +  +K  +  +                RN+P      +    Y   DV    ++ + 
Sbjct: 148 ILDIEIEKESQFSDW---------------RNRPLT----QNQLNYAIKDVEYLIQLKEY 188

Query: 175 LEPLS 179
           L+   
Sbjct: 189 LQQQL 193


>gi|88800842|ref|ZP_01116397.1| ribonuclease D [Reinekea sp. MED297]
 gi|88776415|gb|EAR07635.1| ribonuclease D [Reinekea sp. MED297]
          Length = 380

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 49/189 (25%), Gaps = 36/189 (19%)

Query: 3   TLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            + +D E   T S                 + L   G +D  V L D +        L  
Sbjct: 26  VIALDTEFVRTDSFY-------------AHLGLIQVGIEDQ-VWLIDPLQIND-WAPLVR 70

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L +  +  V H    +  VL     +++       T + A               L   
Sbjct: 71  VLSDPAIVKVLHALSEDAEVLAHHLGVELQ--NVFDTQIAA-------------GFLGHP 115

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            Q       L+   C  E  +     +      A      Y   DV     +++      
Sbjct: 116 VQ--MSYARLVEAICDVELPKEATRSDWLQRPLADEQ-CFYAAADVLWLYRVYQHCAAQL 172

Query: 180 SKEQELWYL 188
            ++    ++
Sbjct: 173 KEQNRYAWV 181


>gi|302383325|ref|YP_003819148.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
 gi|302193953|gb|ADL01525.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
          Length = 382

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 70/276 (25%), Gaps = 49/276 (17%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L       H   +        +     
Sbjct: 23  IAVDTEFMRETTYW---------------PKLCLIQAATPTHEAIIDPQADGLDLT-PFL 66

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L +  +  V H +  +  +      L         T V A              A   
Sbjct: 67  DILRDPAIVKVFHAARQDTEIFVK---LGAMPKPMFDTQVAA-------------MAAGF 110

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             Q   +G  L+ +  K +  +     +      +      Y  GDVT    ++ +L   
Sbjct: 111 GDQVAYDG--LVRQMLKIDLDKGSRFTDWSRRPLSDAQLT-YAIGDVTHLAALYPKLRDR 167

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY------GLVSS 232
            ++E  L ++   + D    V+  L  T                + L            +
Sbjct: 168 LAREGRLDWVTSEMED---LVNPELYDTTPDKAWKRLKPKKYNAKYLAAFKATAVWREQA 224

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           ++  ++ +  +  +  +        T     +  + 
Sbjct: 225 AQDRDQPRGRILKDEAIDEIATQVPTDVEAFNRLRS 260


>gi|197122666|ref|YP_002134617.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
 gi|196172515|gb|ACG73488.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
          Length = 288

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 58/214 (27%), Gaps = 41/214 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E+ S           Y E   V L           + D +   V P  L E L
Sbjct: 29  RVLALDTESNS--------FHVYRE--RVCLLQLSTRAQD-FVVDPISVDVRP--LGEIL 75

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSS 120
            +    +V H + ++   L   +   IP  R   T++ AR  G     L A+ EA     
Sbjct: 76  CD-GREVVLHGADYDVRCLHREYGWRIP--RLFDTMIAARRLGRPGLGLSALVEAH---- 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR------ 174
                G  L   F           R     + A      Y   D      +F        
Sbjct: 129 ----FGVRLSKAF----QRSDWGRRPLTPDQLA------YAALDTHFLLPLFDLLTGELA 174

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                 +  +      ++  R    D      + 
Sbjct: 175 TRGALEEAWKESQRIASVVARERVFDPEGWRRIK 208


>gi|313497620|gb|ADR58986.1| Rnd [Pseudomonas putida BIRD-1]
          Length = 377

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 75/275 (27%), Gaps = 41/275 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  +     +I      D     L D  +     P  L + LE
Sbjct: 27  VAVDTE--------FMRVDTFYPKAGLIQIG---DGQRAFLIDPLLIGNWQP--LADLLE 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKLS 119
           ++ V  V H    +  VL               T + A    L  ++     V E L + 
Sbjct: 74  DSGVVKVLHACSEDLEVLLRLTGKL--PQPLFDTQLAAGYLNLGFSMGYSRLVQEVLGIE 131

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K E   + + R                           Y   D     E+F  L P  
Sbjct: 132 LPKGETRSDWLQRPLSETQVS-------------------YAAEDAVHLAELFSVLRPRL 172

Query: 180 SKEQELWYLDQTINDRGYC---VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           S ++  W L+            V+    +   ++      +    L  L       +R  
Sbjct: 173 SDDKYAWVLEDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNR 232

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  +  E  L     ++      L+   ++ P
Sbjct: 233 DVPRNRILKEHSLWPMAKSQPNNLSALAKIDEMHP 267


>gi|189194651|ref|XP_001933664.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979228|gb|EDU45854.1| exosome complex exonuclease Rrp [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 786

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 33/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E     + T  G+        V L      D    +          + L E  
Sbjct: 225 KEIAIDLE--HHDNRTYIGM--------VCLMQISTRDKDWIVDTLKPWRRKLECLNEVF 274

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLS 119
            +  +  V H ++ +   L+    L I       T   AR+ G   ++L  + E      
Sbjct: 275 ADPSILKVLHGAFMDIVWLQRDLGLYI--VGLFDTFHAARALGYQAASLAYLLELHVNFK 332

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           +QK  +  +                R +P  +E +    EY + D      IF  +    
Sbjct: 333 AQKQYQLADW---------------RQRPLSKELF----EYARADTHFLLYIFDNMRNEL 373


>gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42]
 gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42]
          Length = 240

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 49/181 (27%), Gaps = 39/181 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------- 52
           M  +  D ET    +       +  E   + LF   F                       
Sbjct: 1   MREIIFDTETTGLDN----RADRIIEIGGIELFNH-FPTGNTLHIYINPGDQKVHPDALA 55

Query: 53  -----------------MPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--- 91
                            +   +     +     +AHN+ F+   +      + +P     
Sbjct: 56  VHGITDEFLKDKKPFAAVADEILAFFGDG--KWIAHNATFDMGFINAEFARIGLPPILPD 113

Query: 92  RWICTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKP 148
           + I TL +AR      P++L A+     + +  + + G  L +        E +  R   
Sbjct: 114 KVIDTLSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQAA 173

Query: 149 N 149
            
Sbjct: 174 F 174


>gi|94495607|ref|ZP_01302187.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58]
 gi|94424995|gb|EAT10016.1| ribonuclease D 3'-5' exonuclease [Sphingomonas sp. SKA58]
          Length = 205

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 50/205 (24%), Gaps = 34/205 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALE 62
           + +D ET          +        + +           L             LK  L 
Sbjct: 20  IAVDTET----------MGLITPRDRLCVVQISDGKGDEHLVRFNPGSDYAAPNLKAVLA 69

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           + +   + H   F+   L+    +        CT + +R          LK +   L   
Sbjct: 70  DPERLKLYHFGRFDIAALRHYLGIVAAP--VYCTKIASRLVRTYTDRHGLKELVREL--- 124

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +                     +Y   DV    ++   L+   
Sbjct: 125 ---------LGQDISKQQQSSDWGG------PVLSDAQKDYAASDVRFLHQLKAELDKRL 169

Query: 180 SKEQELWYLDQTINDRGYCVDVALA 204
            +E  +       +   +  ++ LA
Sbjct: 170 EREGRMELAQACFDFLPHRAELDLA 194


>gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
          Length = 229

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 39/178 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------- 52
           M  +  D ET    +     + +  E   + LF   F                       
Sbjct: 1   MREIIFDTETTGLDN----RMDRIIEIGGIELFNH-FPTGNTLHIYINPGDQKVHPDALA 55

Query: 53  -----------------MPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP---IH 91
                            + + +     +     +AHN+ F+   +      + +P     
Sbjct: 56  VHGITDEFLKDKKAFAEVAEEILAFFGDA--KWIAHNATFDMGFINAEFARIGLPPILPE 113

Query: 92  RWICTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           R + TL +AR      P++L A+     + +  + + G  L +        E +  R 
Sbjct: 114 RVVDTLSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQ 171


>gi|322815315|gb|EFZ23992.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
          Length = 713

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 31/175 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y       L         + L DC+    +  +L    
Sbjct: 233 KEIAVDLE--------HHSFYSY--QGFTCLMQISTRSEDI-LIDCLKLRSLMHLLAPVF 281

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N ++  V H +  +   L+  F   + +  +  T +  ++  +P  L            
Sbjct: 282 LNPNILKVLHGAREDIRWLQKDFG--LYLVNFFDTGIALQTLHMPHGLAFA--------- 330

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                   +  FC+ +  +     +             Y + D      ++ RL+
Sbjct: 331 --------VDHFCQVKLDKKYQTADWRIRPIP-AEMVTYARQDTHFLLYVYDRLK 376


>gi|159904246|ref|YP_001551590.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211]
 gi|159889422|gb|ABX09636.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9211]
          Length = 214

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 24/188 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E          G+    +   + L     +   V       +     +LK  LEN
Sbjct: 32  LAIDTE--------AMGLMHGRD--RLCLVQICDESDNVICIRIERNQKSAPLLKNLLEN 81

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA---RSNGLPSALKAVGEAL-KLS 119
             +  + H + F+   L+   NLDI +    CT V +   R+      LK V   L  + 
Sbjct: 82  PSIQKIFHFARFDVAALE--VNLDIKVTPIFCTKVASKIGRTYSPRHGLKEVVMELVNVE 139

Query: 120 SQKMEEGKEL---IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             K  +  +         K   +     R     +E      +          E+  +  
Sbjct: 140 LDKQAQSSDWGAVEDLSAKQLAYAANDVRYLIKAKEKLEHMLKREGR-----WELTTKCF 194

Query: 177 PLSSKEQE 184
                  E
Sbjct: 195 QCIPVMSE 202


>gi|213609178|ref|ZP_03369004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 52

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 626 LTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
           + VHDE+V E    D    +  ++ LM +       +PL  E    + +
Sbjct: 2   MQVHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 48


>gi|224009215|ref|XP_002293566.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970966|gb|EED89302.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 291

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 52/180 (28%), Gaps = 35/180 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMPQVLKEA 60
            +  D E    ++L++ G         ++   F      V L D   +    + + +KE 
Sbjct: 52  KIAFDCE---GVNLSRLGSV------EIVSICFS--SSEVYLIDFGKEKCPKIVEAVKEL 100

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-----PSALKAVGEA 115
            E + +T + H+   +   L    N  I +     T   +  +          L      
Sbjct: 101 FECSTLTKIIHDCRMDFDAL--YHNHGIKLVNVHDT---SAFHDFIGYEKGKNLNDTLSY 155

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                         I    + +      + N    R   +   ++   DV    ++ ++ 
Sbjct: 156 YG------------IRVNTERDKSVYKSNPNFWAARPLTKKMIDWASSDVDKLFQLAEKQ 203


>gi|330926290|ref|XP_003301407.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
 gi|311323973|gb|EFQ90519.1| hypothetical protein PTT_12892 [Pyrenophora teres f. teres 0-1]
          Length = 796

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 33/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E     + T  G+        V L      D    +          + L E  
Sbjct: 235 KEIAIDLE--HHDNRTYIGM--------VCLMQISTRDKDWIVDTLKPWRRKLECLNEVF 284

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLS 119
            +  +  V H ++ +   L+    L I       T   AR+ G   ++L  + E      
Sbjct: 285 ADPSILKVLHGAFMDIIWLQRDLGLYI--VGLFDTFHAARALGYQAASLAYLLELHVNFK 342

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           +QK  +  +                R +P  +E +    EY + D      IF  +    
Sbjct: 343 AQKQYQLADW---------------RQRPLSKELF----EYARADTHFLLYIFDNMRNEL 383


>gi|212528170|ref|XP_002144242.1| exosome complex exonuclease Rrp6, putative [Penicillium marneffei
           ATCC 18224]
 gi|210073640|gb|EEA27727.1| exosome complex exonuclease Rrp6, putative [Penicillium marneffei
           ATCC 18224]
          Length = 795

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 47/200 (23%), Gaps = 41/200 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             + +D E     T   +               V L      D    +          Q 
Sbjct: 248 NEIAVDLEHHDMHTYYGL---------------VSLMQISTRDKDWVVDTLQPWREDLQQ 292

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L E   + ++  V H S  +   L+      + +     T   A + G P        +L
Sbjct: 293 LNEVFADPNILKVFHGSTMDIVWLQRDLG--LYVVGLFDTYHAAVALGFPK------RSL 344

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K   +K    +       K         R              Y + D      I+  L 
Sbjct: 345 KFLLEKYARYEA-----DKKYQMADWRLRPLT------EEMLRYARADTHYLLYIYDCLR 393

Query: 177 PLS--SKEQELWYLDQTIND 194
                    +   +D  +  
Sbjct: 394 NELLEKSTPKRNQIDYVLER 413


>gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 711

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 30/143 (20%)

Query: 4   LFIDFETR----SPIDLTKCGICKYAEDVCVI-LFAF--------GFDDHPVEL------ 44
           +  D ET     S  D           +  ++   +F              +        
Sbjct: 519 VVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRSIPAESIRYHGITDE 578

Query: 45  --WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
              D     V+    +  + +    +VAHN+ F+   L+       +       + T++L
Sbjct: 579 MVIDKPPAGVVLPQFRSYVADA--VLVAHNAAFDLKFLRMREKEMGVRFD-SPVLDTMIL 635

Query: 100 ARSNGLP---SALKAVGEALKLS 119
           +     P    +L  + E   + 
Sbjct: 636 SNFLDGPEAGHSLDDICERYGIE 658


>gi|67537662|ref|XP_662605.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
 gi|40741889|gb|EAA61079.1| hypothetical protein AN5001.2 [Aspergillus nidulans FGSC A4]
 gi|259482125|tpe|CBF76306.1| TPA: exosome complex exonuclease Rrp6, putative (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 1297

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 60/249 (24%), Gaps = 40/249 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           +  Y     V L      +    +          Q+L E  
Sbjct: 250 REIAIDLE--------HHDVHSY--HGLVSLMQISTREKDWVVDTLKPWREELQMLNEVF 299

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            + ++  + H S  +   L+      + +     T   A +   P               
Sbjct: 300 ADPNILKLFHGSSMDIIWLQRDLG--LYVVGMFDTYHAACALNYPK-------------- 343

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
             +  K L+ +F   E  +     +         +F  Y + D      I+  L      
Sbjct: 344 --KSLKYLLHKFVNFEADKQYQMADWRIRPLPSGMF-NYARSDTHYLLYIYDNLRN---- 396

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL--ESLTYGLVSSSRCLEKL 239
                 L          VD  L  +  + +      +      +         +R    L
Sbjct: 397 -----ELLTNSTPEDNLVDYVLEKSKTEALQRYERPVYDAATGQGAGGWYDLMTRSPAIL 451

Query: 240 KTWLFLETG 248
            +  F    
Sbjct: 452 SSEQFAVLK 460


>gi|296536446|ref|ZP_06898543.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
 gi|296263225|gb|EFH09753.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
          Length = 394

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 68/245 (27%), Gaps = 35/245 (14%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + +         V + D   + +    L E L +  VT V H +  +  +        
Sbjct: 48  PELCVVQLA-GAEDVAVIDAQAEGLDLAPLGELLADPKVTKVFHAARQDVEICI--LRFG 104

Query: 88  IPIHRWICTLVLARSNGLP--SALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYD 144
            P      T + A   G    ++  ++  AL      K     +  AR            
Sbjct: 105 APPRPLFDTQIAAMVAGFGDQASYDSLVRALAGAQIDKAHRFSDWAARPLSPAQIN---- 160

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                          Y   DVT  R ++  L    ++E  L ++     +     D A  
Sbjct: 161 ---------------YAAADVTHLRRVYTALVERLTQEGRLSWV---AEEMAELTDPATY 202

Query: 205 HTLNQIVDVERT------KLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTET 257
               +             +    +++L       ++ +   +  L  +  L  +   + +
Sbjct: 203 RQDPETAWERLKPRSSNRRFLAAVQALAAWREREAQRVNIPRQRLVRDETLMEIAATSPS 262

Query: 258 TCQRV 262
           T   +
Sbjct: 263 TAAEL 267


>gi|217978678|ref|YP_002362825.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
 gi|217504054|gb|ACK51463.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
          Length = 235

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 44/147 (29%), Gaps = 32/147 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ----- 55
           M  + +D ET       K G  +  E   V L                 +  MP      
Sbjct: 1   MREIVLDTETTGLDP--KQG-HRIVEIGAVELLN-SIPTGQSFHVYIHPERDMPDEAFRV 56

Query: 56  ---------------VLKEALEN--TDVTIVAHNSYFERTVLK----ACFNLDIPIHRWI 94
                           +  AL +   +  I+AHN+ F+   L           +   R +
Sbjct: 57  HGISLEFLTGKPLFAEIVPALIDFLGEAKIIAHNAEFDFRFLNAEFLRAEAEPLAWERVV 116

Query: 95  CTLVLARSN--GLPSALKAVGEALKLS 119
            TL LAR    G  ++L A+     + 
Sbjct: 117 DTLALARRRFPGASNSLDALCARFGVD 143


>gi|197103637|ref|YP_002129014.1| ribonuclease D [Phenylobacterium zucineum HLK1]
 gi|196477057|gb|ACG76585.1| ribonuclease D [Phenylobacterium zucineum HLK1]
          Length = 205

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 47/180 (26%), Gaps = 35/180 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+ +   D   +            L            LK  L +
Sbjct: 21  VAIDSET--------MGL-RLGRDPLCV-VQLSDGGGDAHLVKLDRTTYDAPNLKRLLTD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA---RSNGLPSALKAVGEA-LKLS 119
             VT + H   F+  +        +      CT + +   R+      LK + +  L + 
Sbjct: 71  PAVTKIFHFGRFDIAMFWLHLG--VLTAPVYCTKIASKIARTYTDRHGLKDISKELLGVD 128

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                               Y   DV     +  RL+ + 
Sbjct: 129 MSKAQQSSDW---------GAGKLS----------DEQVAYAASDVLHLHALKDRLQQML 169


>gi|221194797|ref|ZP_03567854.1| ribonuclease D [Atopobium rimae ATCC 49626]
 gi|221185701|gb|EEE18091.1| ribonuclease D [Atopobium rimae ATCC 49626]
          Length = 376

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 62/266 (23%), Gaps = 34/266 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D E      L +           + L      +    +     D      L    E
Sbjct: 21  VLAVDTE-----FLREKTYY-----PKLCLVQVSTGEEIAAIDPLSIDD--LSPLVRLFE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V H    +  VL   + +         T + A   G+                 
Sbjct: 69  DQKIVKVIHACSQDLEVLL--YGMHCACAPVFDTQLAAAFLGMRQQASYASVVEHYMGVH 126

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           + + + L     +                        Y + DV    +I++ +     K 
Sbjct: 127 LPKTESLTDWSRRPLD----------------PEQLVYAEDDVRYLPDIYRCMYERLMKT 170

Query: 183 QELWYLDQTINDRG----YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
             L +L   +N       +  D   A+   +  +    +       +       +     
Sbjct: 171 NRLGWLMPEMNAYTAPENFKRDPKEAYLHLKRSNSLTRRQMALAREICAWREERAAQHNI 230

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLS 264
            + W+  +  L             L 
Sbjct: 231 PRKWIISDETLVEICKRSPATSERLK 256


>gi|161617952|ref|YP_001595432.1| DNA polymerase [Enterobacteria phage phiEcoM-GJ1]
 gi|150416371|gb|ABR68749.1| DNA polymerase [Enterobacteria phage phiEcoM-GJ1]
          Length = 644

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 93/755 (12%), Positives = 174/755 (23%), Gaps = 214/755 (28%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL-----KEAL 61
           D ET   ++  +        +              +   D +               +A 
Sbjct: 12  DIETTGLLEQMRKQAAPRLHN--------------IGYIDVLTREETVIEWTDRKSIQAF 57

Query: 62  ENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALK 117
            +T  T++ HN + F+   L      D+     I TL ++           L+  GE   
Sbjct: 58  LDTGPTLIMHNGATFDFEAL-RFLGYDVSKCTLIDTLFISWYLQPRRVKHGLEGYGEEFG 116

Query: 118 LSSQKMEEGKELIARF------------CKGETHECLYDRNKPNHREAWRLFGEY----C 161
           +    +E+ +                   K    + +            + F EY     
Sbjct: 117 VPKPVIEDWENQTQEEYNHRVMEDCKIQLKLWEQQYIQLLKIYKSPSEVKRFVEYLMTKA 176

Query: 162 KGDV-----------TVTREIFKRLEPLSSKEQELWYLDQ-TINDRGYCVDVALAHTLNQ 209
           +  V                   +LEP+  ++ +        I +       A  H +N 
Sbjct: 177 RQQVIQQRTRWKLNIEKALAFKAKLEPMIKEKTDALEASMPRIPEYVIKTRPAKCHKMNG 236

Query: 210 IVDVERTKLDQ--------------ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL- 254
            +     K                  ++ L      ++    ++K WLF           
Sbjct: 237 QLSATGIKWKAVCDANGLDWKDPDLAIKVLKGYKEPNAGSHVQIKDWLFSLGWEPETFKF 296

Query: 255 --TETTCQR-------------------VLSSNKKLTPQ--AIQVFNNRMRASRSAVLKL 291
              + T +                     L    +  P+     +    +   R +V  +
Sbjct: 297 DRNKETGETRQIPQITVKDEDGNPEICPSLHKLAERNPESGIQHLIGMGVYKHRLSV--V 354

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
           N  +  ++ DG L       G + T R         NLP                     
Sbjct: 355 NGFLRDVDEDGYLTARC--GGLTNTLRLKHRE--LVNLP--------------------- 389

Query: 352 SDPDPLQIISDCVRSCVIA-SEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                     + +RS + A  E  + + +DL  +E R                       
Sbjct: 390 ---SIRVFGGEELRSMLEAWREDYEQLGSDLCSLEDRCKHHFQ----------------- 429

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
                 +   P  V K                G     +      G+             
Sbjct: 430 ------WMYDPEYVKKQLAPDYDAHLAIGVIGGFITEQESQDHKDGI----------KKC 473

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
                    N+        P  A       T   R+ KA+   +  +            +
Sbjct: 474 KQRPMFKTTNYACQYGAGVPTVARSAGCDQTTAARLHKAYWDLNWSIK-----------E 522

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
              N K I                   +    P               +  +   +  R 
Sbjct: 523 IAANTKVITV--------------DGQMWQQNPV------------NKFWYSLRTEKDRF 556

Query: 591 YTYGGKLTENIVQAVSR---DILAEGMMNA--TKAGYDIVL--TVHDEIVCETPDT-DEF 642
            T        + Q       DI    ++     + G D +L    HDE++ +      + 
Sbjct: 557 ST--------LCQGTGAYVFDIWCNNIIAICNERWGCDPLLSGQFHDELILQVKKGFRDL 608

Query: 643 NASMLYHLMTSNPSWAKGLPLK----AEGYESKRY 673
              +L   M       K L L      +      Y
Sbjct: 609 WTDLLNEAMDRT---NKELKLNRDCACDVQFGDNY 640


>gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 231

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 45/161 (27%), Gaps = 36/161 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-----------------------AFGF 37
           M  +  D ET     L      +  E   V L                        A   
Sbjct: 1   MREIVFDTETTGLERLE----DRVIEIGGVELINKFPTGRTFHKYINPQGRQVHPEALAV 56

Query: 38  DD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                 +L D      +     E        +VAHN+ F+       L      +I   R
Sbjct: 57  HGISNEQLLDKPTFAEVLDEFLEFF--DGAKLVAHNAMFDLGFINAELARLGQAEIQSER 114

Query: 93  WICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
            I TL LAR      P++L A+ +   + +        L+ 
Sbjct: 115 IIDTLALARRKHPMGPNSLDALCKRYGIENGHRTLHGALLD 155


>gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
 gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4]
          Length = 236

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 62/230 (26%), Gaps = 41/230 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVL- 57
           M  +  D ET       +  + +  E   + LF   F          +     + P  L 
Sbjct: 1   MREIVFDTETTGL----ESKLDRVIEIGGIELFNH-FPTGRSFHVYINPADRAIHPDALA 55

Query: 58  -----------KEALEN---------TDVTIVAHNSYFERTV----LKACFNLDIPIHRW 93
                      K    +              VAHN+ F+        +      +     
Sbjct: 56  VHGITPEFLKDKPVFADIVEDLVAFFDGAKWVAHNATFDMGFINAEFERLGRPLVGPEHV 115

Query: 94  ICTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNH 150
           I TL LAR      P++L A+     + +  + + G  L +        E L  R     
Sbjct: 116 IDTLSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMLGGRQATFG 175

Query: 151 REAWRLFGEYCK-GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
            E      +  +  D  VT EI  R +            +         V
Sbjct: 176 LEQSGNSDKRSRTQDSNVTVEIAARPK-----TLASRLTEAEQERHAALV 220


>gi|330883874|gb|EGH18023.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 108

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
             E  L  +   I  +G  VD  L    +  +  + T L++E  ++      +    ++L
Sbjct: 1   DIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAG-EEFNLGSPKQL 59

Query: 240 KTWLFLETGLHLEDLT----ETTCQRVLSSNKKLTPQAIQVF 277
              L+ + G+ +   T     +T + VL+ + +    A  + 
Sbjct: 60  GVILYEKLGMPILSKTATGQASTAEAVLALSWERPHLAPLML 101


>gi|209964314|ref|YP_002297229.1| exonuclease, putative [Rhodospirillum centenum SW]
 gi|209957780|gb|ACI98416.1| exonuclease, putative [Rhodospirillum centenum SW]
          Length = 699

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 37/150 (24%), Gaps = 42/150 (28%)

Query: 3   TLFIDFETRSPID---------------------------LTKCGICKYAEDVCVILFAF 35
            +  D ET                                L   G    A    +     
Sbjct: 506 YVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGIT- 564

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHR 92
                   + +      +    +  + +    +VAHN+ F+   L+       +      
Sbjct: 565 -----DAMVAEAPRAEAVLPPFRAFVGDA--VLVAHNAAFDLKFLRLKQRAAGVRFD-GP 616

Query: 93  WICTLVLARSNGLP---SALKAVGEALKLS 119
            + T++L+R         +L  +   L + 
Sbjct: 617 VLDTMILSRQIQGDHGEHSLDGLAARLGIG 646


>gi|83593408|ref|YP_427160.1| ribonuclease D [Rhodospirillum rubrum ATCC 11170]
 gi|83576322|gb|ABC22873.1| Ribonuclease D [Rhodospirillum rubrum ATCC 11170]
          Length = 386

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 74/265 (27%), Gaps = 26/265 (9%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVT 67
            E+   +D        Y     + L             D +   +    L   + N  V 
Sbjct: 19  TESFVTVDTEFMREKTYW--PKLCLIQLA-GTTEAHCVDPLAPDIDMAPLFALMANESVL 75

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
            V H +  +  +                T V A   G   +                  +
Sbjct: 76  KVFHAARQDLEIFLHESGHLPKP--IFDTQVAAMVCGFGDS---------------VGYE 118

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
            L+A+  K    + +   +        R    Y  GDVT  R +++RL    +      +
Sbjct: 119 TLVAKLAKARIDKSMRFTDWARRPLNDRQLV-YAAGDVTHLRVVYERLAETLAANGRTAW 177

Query: 188 LDQTINDRG----YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
           LDQ +        Y V+   A  +         +    L+ L      +++  +  +  +
Sbjct: 178 LDQEMAILTDPAHYRVEPEDA-WMRIKARSRSARFLALLQELAAWRERTAQERDLPRNRV 236

Query: 244 FLETGLHLEDLTETTCQRVLSSNKK 268
             + GL     +  T    LS  + 
Sbjct: 237 MRDEGLLEIAASAPTTPDALSQLRS 261


>gi|225429426|ref|XP_002276186.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147856945|emb|CAN82846.1| hypothetical protein VITISV_007988 [Vitis vinifera]
 gi|296081603|emb|CBI20608.3| unnamed protein product [Vitis vinifera]
          Length = 341

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 17/188 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEAL 61
            +  D E    +DL + G         ++  AF      + L D +    M  +  K AL
Sbjct: 57  VIGFDCE---GVDLCRHGTLC------IMQIAF---PDAIYLVDAIQGGEMLMKACKPAL 104

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E++ +T V H+   +   L   F   I +H  + T +           K + +       
Sbjct: 105 ESSYITKVIHDCKRDSEAL--YFQFGIKLHNVVDTQIAYSLIEEQEGRKRLVDDYISFVG 162

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            + + +     + + +    L  +N     HR    L       DV     I+ ++    
Sbjct: 163 LLADPRYCGVSYLEKQEVRDLLRQNPDFWTHRPLSDLMVRAAADDVRFLLYIYHKMMEKL 222

Query: 180 SKEQELWY 187
           ++    + 
Sbjct: 223 NERSLWYL 230


>gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512]
          Length = 241

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 39/178 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------- 52
           M  +  D ET    +     + +  E   + LF   F                       
Sbjct: 1   MREIIFDTETTGLDN----RMDRIIEIGGIELFNH-FPTGNTLHIYINPGDQKVHPDALA 55

Query: 53  -----------------MPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP---IH 91
                            + + +     +     +AHN+ F+   +      + +P     
Sbjct: 56  VHGITDEFLKDKKAFAEVAEEILAFFGDA--KWIAHNATFDMGFINAEFARIGLPPILPE 113

Query: 92  RWICTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           R + TL +AR      P++L A+     + +  + + G  L +        E +  R 
Sbjct: 114 RVVDTLSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQ 171


>gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
 gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
          Length = 241

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 39/178 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-------- 52
           M  +  D ET    +     + +  E   + LF   F                       
Sbjct: 1   MREIIFDTETTGLDN----RMDRIIEIGGIELFNH-FPTGNTLHIYINPGDQKVHPDALA 55

Query: 53  -----------------MPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP---IH 91
                            + + +     +     +AHN+ F+   +      + +P     
Sbjct: 56  VHGITDEFLKDKKAFAEVAEEILAFFGDA--KWIAHNATFDMGFINAEFARIGLPPILPE 113

Query: 92  RWICTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           R + TL +AR      P++L A+     + +  + + G  L +        E +  R 
Sbjct: 114 RVVDTLSMARRKHPMGPNSLDALCRRYGVDNSHRAKHGALLDSELLAEVYIEMIGGRQ 171


>gi|291335496|gb|ADD95108.1| DNA polymerase 2 [uncultured phage MedDCM-OCT-S04-C348]
          Length = 228

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 67/221 (30%), Gaps = 31/221 (14%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM------PQVLKEALE 62
           E     DL   G+  Y +   +             ++D      +           E+L 
Sbjct: 21  EKWYVFDLETNGL--YDDVTEIFCI---------VIYDVTRQQTITYRPDSIDRAIESLN 69

Query: 63  NTDVTIVAHNS-YFERTVLKACFN-LDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLS 119
           N DV  + HN  +++  VL+       +     I TL+  R       L ++   +    
Sbjct: 70  NADVL-IGHNIIFYDIPVLQKLKPSFVLDKQHVIDTLICTRLIWPKEKLLESDTTSYARV 128

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL- 178
              ++    L A   +   ++  +                YC  DV VT ++F+ ++   
Sbjct: 129 PGGLKGSASLKAWGYRLSDYKIDFKDFTSFS----EDMLSYCVQDVNVTTKLFEHIQNQT 184

Query: 179 -----SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
                   E       +     G+  D+  A      ++ +
Sbjct: 185 ISPTSLELEHTFASCIERQIRSGFPFDIDAAIAFVDELEYK 225


>gi|308049432|ref|YP_003912998.1| ribonuclease D [Ferrimonas balearica DSM 9799]
 gi|307631622|gb|ADN75924.1| ribonuclease D [Ferrimonas balearica DSM 9799]
          Length = 374

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 67/233 (28%), Gaps = 40/233 (17%)

Query: 4   LFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           + +D E   TR+                 + L    +D   + L D +    +   L + 
Sbjct: 29  VALDTEFVRTRTL-------------HAQLGLIQL-YDGETLALIDPLEIQDL-GPLWQL 73

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + + +V  V H++  +  +        +       T V      L  A+           
Sbjct: 74  IADKNVVKVLHSASEDLEIFAYRGG--VIPQPLFDTQVAGVLLNLGGAMGYGKLIHHYLG 131

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            ++++G+       +  +                     Y   DV    ++++ + P   
Sbjct: 132 LELDKGEARTDWLKRPLS----------------EKQLTYAAADVYYLLQVYRMMRPAIE 175

Query: 181 KEQELWYLDQTIND----RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
           +   L +L Q        R    D   A+   +     + K    L++L    
Sbjct: 176 EMGRLDWLWQEGERACRGRLKPDDPNKAYLKVKNAWQLKPKQLAVLKALAAWR 228


>gi|288956846|ref|YP_003447187.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
 gi|288909154|dbj|BAI70643.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
          Length = 227

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 30/147 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--- 57
           M  + +D ET            +  E  C+ L           ++      + P+     
Sbjct: 1   MREIVLDTETTG---FKPEEGHRLVEIGCIELVNHLATGERFHVYLNPERDMPPEAFAVH 57

Query: 58  ---------KEALENTDVTIVA---------HNSYFERTVLKACFNLD----IPIHRWIC 95
                    K    +     VA         HN+ F+   L     +     +P  R I 
Sbjct: 58  GLSEEFLADKPLFNDVAADFVAFIGDSPLVIHNAAFDMHFLNWELKIAGYPVMPKDRAID 117

Query: 96  TLVLAR--SNGLPSALKAVGEALKLSS 120
           TL++AR    G P+ L A+ +   + +
Sbjct: 118 TLLMARQKFPGSPATLDALCKRFGVDN 144


>gi|260790959|ref|XP_002590508.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
 gi|229275702|gb|EEN46519.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
          Length = 832

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 46/177 (25%), Gaps = 30/177 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
              +D E             +  +    +       DH   + D +       VL +   
Sbjct: 294 EFAVDLE---------HHSYRSFQGFTCL-MQVSTRDHD-YIVDTLALRADLHVLNDTFT 342

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  V H +  +   L+  F   + +     T   +   GLP    ++          
Sbjct: 343 DPKVVKVFHGADMDIQWLQRDFG--VYVVNMFDTGQASHVLGLPR--HSLA--------- 389

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                 L+  +C  E  +     +            +Y + D      I+  +    
Sbjct: 390 -----YLLKTYCDVEPDKKYQLADWRIRPLPSE-MTQYAREDTHYLLHIYDCMRSEL 440


>gi|167648909|ref|YP_001686572.1| 3'-5' exonuclease [Caulobacter sp. K31]
 gi|167351339|gb|ABZ74074.1| 3'-5' exonuclease [Caulobacter sp. K31]
          Length = 205

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 48/180 (26%), Gaps = 35/180 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+ +   D   +       D    +            LK  L +
Sbjct: 21  IAIDSET--------MGL-RLGRDPLCV-VQLSSGDGDAHVVRLDRATYDAPNLKRLLTD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             V  + H   F+  +        +      CT + ++          LK V   L  + 
Sbjct: 71  PSVVKLFHFGRFDIAMFLLHLG--VMTAPVYCTKIASKLARTYTDRHGLKDVTRELVGVE 128

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K+++  +  A     E                      Y   DV     + +RL  + 
Sbjct: 129 LSKVQQSSDWGAATLSPEQ-------------------LAYAASDVLHLHALRERLNAML 169


>gi|256073603|ref|XP_002573119.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
 gi|238658291|emb|CAZ29351.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
          Length = 830

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 76/339 (22%), Gaps = 43/339 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E  S                   L           + D +       +L E  
Sbjct: 234 KYIAVDLEHHSYRSFLGIT----------CLIQMSTLGSD-YIIDALALRDHLSILNEVF 282

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
            +  +  V H S  +   L+  F   + +     T + AR       +L  + +      
Sbjct: 283 TDPKIVKVFHGSDSDLMWLQRDFG--VYVVNLFDTGIAARLLQYGRFSLSYLLQRF---- 336

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   +     K         R  P          EY + D      I  R+     
Sbjct: 337 --------VGIYANKKYQLADWRIRPLP------NELIEYARSDTHYLLHIASRMCRELQ 382

Query: 181 KEQELWYLDQTINDRGYCV-DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
               L    +             + + L  +    +T          Y L +     + +
Sbjct: 383 DRDLLSVAIERARQLCLRCYTKPVFNRLGYLDLYRQTGSSSFSHRQLYALENLYALRDSI 442

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSS-----NKKLTPQAIQVFNNRMRASR----SAVLK 290
                      L +        VL            P    V        +    +  L 
Sbjct: 443 ARREDESLHYVLPNHMLKVIAEVLPRESSGIFACCNPIPPLVRKYVHDLHKIIVDARNLP 502

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNL 329
           +  L    + + RL             R S  +   QNL
Sbjct: 503 ITDLP-LTSEEPRLSTQPNSQQQENDKRSSVNIPNTQNL 540


>gi|163738084|ref|ZP_02145500.1| exonuclease, putative [Phaeobacter gallaeciensis BS107]
 gi|161388700|gb|EDQ13053.1| exonuclease, putative [Phaeobacter gallaeciensis BS107]
          Length = 204

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 49/200 (24%), Gaps = 38/200 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    +            L   LE
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVVQLSGGDGNAHMVQIAKGQSEAPNLCAMLE 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           + +V  + H   F+   +   F          CT + +R                   + 
Sbjct: 69  DPNVLKLFHFGRFDIAAMYHAFG--ALAAPVYCTKIASRLV-----------------RT 109

Query: 123 MEEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
             +   L     +    +    +   +    +      +Y   DV     +   L+    
Sbjct: 110 YTDRHGLRNLTQELIGVDISKQQQMSDWGAAQLSDAQLDYAASDVLHLHRLRAALDKRLD 169

Query: 181 KEQELWYLDQTINDRGYCVD 200
           +E               C D
Sbjct: 170 RED-------RSEMAQACFD 182


>gi|323135821|ref|ZP_08070904.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
 gi|322398912|gb|EFY01431.1| DNA polymerase III, epsilon subunit [Methylocystis sp. ATCC 49242]
          Length = 239

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 30/146 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-------AFGFD-----DHPVELWDCV 48
           M  +  D ET          + +      + L        A+  D              +
Sbjct: 1   MREIVFDTETTGLDPSKGDRVVEIGAVEILNLIPTGRVFHAY-IDPERDMPEEAFRVHGL 59

Query: 49  HDP---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRWIC 95
                        + +   + +E++   +VAHN+ F+   + A F++     +   R + 
Sbjct: 60  SREFLSQHRKFREIAEEFIDFIEDS--PMVAHNAEFDVRFINAEFSMLNFAPLAPARIVD 117

Query: 96  TLVLARSN--GLPSALKAVGEALKLS 119
           TL +AR    G P++L A+ +   + 
Sbjct: 118 TLAIARRLHPGSPASLDALCQRYGID 143


>gi|301768381|ref|XP_002919612.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase subunit gamma-1-like
            [Ailuropoda melanoleuca]
          Length = 1227

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/406 (12%), Positives = 104/406 (25%), Gaps = 60/406 (14%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R           GR+   +   Q + 
Sbjct: 787  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRHPDY----DEEGRYGAILP--QVVT 840

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 841  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAA 894

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 895  VLGDAHFARMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQP 954

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA---- 502
              +++       L       K        +    +    +       +      T     
Sbjct: 955  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGEWLVRELHLPVDRTEDGWV 1014

Query: 503  -CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              + ++K  R+        W +     E+    G       + +   +        L   
Sbjct: 1015 SLQDLRKIQREASR--KSRWKKWEVVAERAWMGGTESEMFNKLESIAMSDTPCTPVLGCR 1072

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRD---ILAEGMM 615
                                  +R L      G  +      +VQ+ + D   ++   M 
Sbjct: 1073 ---------------------ISRALEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMK 1111

Query: 616  NATKAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
               +         +++HDE+     + D + A+       +L   M
Sbjct: 1112 WLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1157


>gi|260426693|ref|ZP_05780672.1| ribonuclease D [Citreicella sp. SE45]
 gi|260421185|gb|EEX14436.1| ribonuclease D [Citreicella sp. SE45]
          Length = 385

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 79/292 (27%), Gaps = 50/292 (17%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMP 54
            + +D E     T                   + L    F    D    L D + D +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAFPGKGDENAVLVDPLVDGLDL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L E   NT V  V H +  +  +     +  +       T V A   G        GE
Sbjct: 67  EPLLELFRNTAVVKVFHAARQDLEIF--FIDHGVIPDPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ R  K    +     +            +Y   DVT  R I++ 
Sbjct: 118 QVGY--------ETLVKRIAKQALDKSSRFTDWSRRPL-TEAQKKYALADVTHLRVIYEY 168

Query: 175 LEPLSSKEQELWYL---DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           L     +     ++      + D    +                 +    +++L      
Sbjct: 169 LAAELERTGRARWVAEELAVLTDPETYITRPEDAWQRVKTRSSSPRFLAIVQALAAFREE 228

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTET-TCQR-----VLSSNKKLTPQAIQVF 277
            ++     +  +F +  L     T+  T +      +L    +  P A  + 
Sbjct: 229 YAQSRNIPRNRVFKDDALTELASTKPVTMEDLGRSRLLLREARKGPIADGIL 280


>gi|241206948|ref|YP_002978044.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860838|gb|ACS58505.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 240

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 50/173 (28%), Gaps = 29/173 (16%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVILFAFGFDDHPVELWDCV---HD-- 50
           M  +  D ET    +     +   GI  +             +    ++       H   
Sbjct: 1   MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAVHGIT 60

Query: 51  ----------PVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICT 96
                       + + +     +     +AHN+ F+       L       I   R + T
Sbjct: 61  DEFLKDKQPFGEVAEQILTFFGDA--KWIAHNATFDMGFINAELARIGLPPILPERVLDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           L +AR      P++L A+     + +  + + G  L +        E +  R 
Sbjct: 119 LSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQ 171


>gi|158292666|ref|XP_314043.4| AGAP005155-PA [Anopheles gambiae str. PEST]
 gi|157017099|gb|EAA09562.4| AGAP005155-PA [Anopheles gambiae str. PEST]
          Length = 1064

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 57/215 (26%), Gaps = 21/215 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            +  D E    I+L   G         + +   G       ++D    P M     LKE 
Sbjct: 558 IVSFDCE---GINLGVRG--------QITMVQLGTTRGEAFIFDIATCPDMVVEGGLKEI 606

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+  V  V H+   +   L   F + +       T             K V +   +S 
Sbjct: 607 LESEKVIKVIHDCRNDSVNLFNQFQILLR--NVFDTQSAHAVLQFQDQGKQVYKVKNVSL 664

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTV----TREIFKRL 175
             + E         K +         K   R    R    Y  GDV +       +    
Sbjct: 665 NTLCEMYNATVNPMKDQLKNVYRRDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNMAT 724

Query: 176 EPLSSKEQELWYLDQTIN-DRGYCVDVALAHTLNQ 209
                  + L  L           VDV +     +
Sbjct: 725 SIRPEYRELLSELCTEQILMLIRPVDVKMRKKQRK 759


>gi|332238690|ref|XP_003268536.1| PREDICTED: DNA polymerase subunit gamma-1 [Nomascus leucogenys]
          Length = 1231

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/406 (12%), Positives = 104/406 (25%), Gaps = 60/406 (14%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 785  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 838

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 839  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 892

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   KV      Y  G  
Sbjct: 893  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKVFNYGRIYGAGQP 952

Query: 447  AFQKMASTT-----GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +++                A  +   +    W    +   W+                
Sbjct: 953  FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELHLPVDRTEGGWI 1012

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            + + ++K  R+        W +   A E+  + G       + +            L   
Sbjct: 1013 SLQDLRKVQREAAR--KSQWKKWEVAAERAWKGGTESEMFNKLESIATSDIPRTPVLGCC 1070

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRD---ILAEGMM 615
                                  +R L      G  +      +VQ+ + D   ++   M 
Sbjct: 1071 ---------------------ISRALEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMK 1109

Query: 616  NATKAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
               +         +++HDE+     + D + A+       +L   M
Sbjct: 1110 WLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1155


>gi|310815760|ref|YP_003963724.1| ribonuclease D [Ketogulonicigenium vulgare Y25]
 gi|308754495|gb|ADO42424.1| ribonuclease D [Ketogulonicigenium vulgare Y25]
          Length = 388

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 72/258 (27%), Gaps = 29/258 (11%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           ++  AF   D    L D + D +  + L +   N  V  V H +  +  +       ++ 
Sbjct: 41  LVQLAFSGPDADAALVDPLADGIDLKPLYDLFLNPAVVKVFHAARQDLEIFS--VGQNVI 98

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
                 T V A   G                 +    + L  +  K +  +     +   
Sbjct: 99  PAPLFDTQVAAMVCGYG---------------EQVSYETLARKIAKADIDKTSRFTDWSR 143

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI---NDR-GYCVDVALA- 204
              +     EY   DVT  R+I++ L    +K     ++ + +   ND   Y VD   A 
Sbjct: 144 RPLS-EAQKEYALADVTHLRQIYENLSAQIAKSGRAAWVAEEMGVLNDPDTYRVDPEQAW 202

Query: 205 -----HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
                 T +        +                R        +     L      +   
Sbjct: 203 LRVKTRTSSAKFLAVMKE-LARFREEYAQAQDVPRSRVYKDDAMLELASLKPATEDDLGT 261

Query: 260 QRVLSSNKKLTPQAIQVF 277
            R+L    +  P A  + 
Sbjct: 262 ARLLLREARRGPIADGIL 279


>gi|226945355|ref|YP_002800428.1| ribonuclease D protein [Azotobacter vinelandii DJ]
 gi|226720282|gb|ACO79453.1| ribonuclease D protein [Azotobacter vinelandii DJ]
          Length = 375

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 66/252 (26%), Gaps = 35/252 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  +     ++      D     L D        P  L   LE
Sbjct: 27  VALDTE--------FVRVDTFYPQTGLVQVG---DGRSAYLIDPLDIGDWRP--LAALLE 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  V H    +  VL       +P+     T + A    L  ++             
Sbjct: 74  DPAVVKVLHACSEDLEVLLRLTG-SLPL-PLFDTQLAAAYLNLGFSMG------------ 119

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                 L+      E  +     +      +  L   Y   D     E++  L    +++
Sbjct: 120 ---YSRLVQAVLGIELPKGETRSDWLQRPLS-ELQIRYAAEDAVHLAELYVALGARLAED 175

Query: 183 QELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           +  W L+            V     +   ++      +    L  L       +R  ++ 
Sbjct: 176 KRAWTLEDGAELVANLRREVLPEELYREGRLAWKLSRQQLAVLRELYAWREREARRRDQP 235

Query: 240 KTWLFLETGLHL 251
           +  +  E  L  
Sbjct: 236 RNRILRENSLWP 247


>gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
 gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
          Length = 236

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 47/176 (26%), Gaps = 35/176 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHDPVMPQVL- 57
           M  +  D ET    +       +  E   + LF   F          +     V P  L 
Sbjct: 1   MREIIFDTETTGLDN----KADRIIEIGGIELFNH-FPTGKTLHLYINPGDRKVHPDALA 55

Query: 58  -----------KEALEN---------TDVTIVAHNSYFERTV----LKACFNLDIPIHRW 93
                      K    +              +AHN+ F+               I     
Sbjct: 56  VHGITDESLKDKPPFADVADEILAFFEGAKWIAHNATFDMGFVNAEFNRLGRPPILPDMV 115

Query: 94  ICTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           I TL +AR      P++L A+     + +  +   G  L +        E +  R 
Sbjct: 116 IDTLAMARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIEMIGGRQ 171


>gi|197103471|ref|YP_002128848.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
 gi|196476891|gb|ACG76419.1| DNA polymerase III epsilon chain [Phenylobacterium zucineum HLK1]
          Length = 234

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 38/164 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYA----EDV----------------------CVILFAF 35
             + +D ET     LT   + + A    ED                        V   + 
Sbjct: 3   REIVLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDPCRDMPAEAEKVHGLST 62

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIH 91
            F             P + +   + + +    IVAHN+ F+R  +     L    ++P H
Sbjct: 63  AFLRGK----PKFEAPEIVEAFLDFVADA--PIVAHNAAFDRAFVNYELGLCSRAELPDH 116

Query: 92  RWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
           RWI TL LA  R  G+ ++L A+ +  K+S  + E+   LI   
Sbjct: 117 RWIDTLALAKQRFPGMHNSLDALCKRFKISLAEREKHGALIDTK 160


>gi|167646508|ref|YP_001684171.1| ribonuclease D [Caulobacter sp. K31]
 gi|167348938|gb|ABZ71673.1| ribonuclease D [Caulobacter sp. K31]
          Length = 389

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 75/274 (27%), Gaps = 45/274 (16%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L      D    +        + + L 
Sbjct: 23  IAVDTEFMRETTYW---------------PKLCLIQVASPDIEACIDPLAEGMDL-EPLL 66

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V  V H +  +  +      L+        T V              G A   
Sbjct: 67  EILRDPGVLKVFHAARQDVEIFNN---LNAMPTPLFDTQVA-------------GMAAGF 110

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             Q       L+ +  K E  +     +      +      Y   DVT    +F  L   
Sbjct: 111 GEQ--IAYDALVRQMLKIELDKSSRFTDWARRPLSDAQLT-YAVADVTHLATLFPILRER 167

Query: 179 SSKEQELWYLDQTI---NDRGYC-VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
             K   L ++++ +   ND     VD   A    +      +K     +++      +++
Sbjct: 168 LEKAGRLAWVEEEMKALNDPAAYDVDPEKAWRRLRP-RKTGSKYLAVFKAVAAWRERTAQ 226

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
             ++ +  +  +  +        T    L++ + 
Sbjct: 227 TRDQPRGRILKDEAIDELATQAPTSLEGLNTLRS 260


>gi|126731278|ref|ZP_01747085.1| ribonuclease D [Sagittula stellata E-37]
 gi|126708189|gb|EBA07248.1| ribonuclease D [Sagittula stellata E-37]
          Length = 385

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 55/208 (26%), Gaps = 44/208 (21%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMP 54
            + +D E     T                   + L         D    L D + D +  
Sbjct: 22  YITVDTEFLRERTYYS---------------KLCLIQLALPGKGDEDAVLVDPMVDGLSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L E   +  +  V H +  +  +     +  +       T V A   G        GE
Sbjct: 67  DPLLELFRDESIVKVFHAARQDLEIF--FIDHGVIPQPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ R  K +  +     +             Y   DVT  REI++ 
Sbjct: 118 QVGY--------ETLVKRIAKQQLDKSSRFTDWSRRPLTDAQ-KSYALADVTHLREIYEF 168

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVA 202
           L     +     ++     + G   D  
Sbjct: 169 LAAKLEESGRSRWV---AEELGVLTDPE 193


>gi|304392222|ref|ZP_07374164.1| 3'-5' exonuclease [Ahrensia sp. R2A130]
 gi|303296451|gb|EFL90809.1| 3'-5' exonuclease [Ahrensia sp. R2A130]
          Length = 211

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 29/202 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET                   + +      D   ++            +++ L +
Sbjct: 27  VAIDTETLGLRP----------RRDRLCVVQLSPGDGTADVVQIEKGQTSAPNIEKLLVD 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           T+V  + H   F+  VL   F      +   CT + +R                L +   
Sbjct: 77  TNVQKIYHYGRFDIAVLYHAFGALSDNN--FCTKIASRL---TRTYTD---RHGLKN--- 125

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-YCKGDVTVTREIFKRLEPLSSKE 182
               ELI              ++     E      + Y   DV     +   L    ++E
Sbjct: 126 -LTHELI------GVDLSKVQQSSDWAAEELTKAQQAYAASDVLHLHALRDALLKRLARE 178

Query: 183 QELWYLDQTINDRGYCVDVALA 204
                 D+          + LA
Sbjct: 179 DRQHLADECFKFLPTRCLLDLA 200


>gi|114764076|ref|ZP_01443315.1| exonuclease, putative [Pelagibaca bermudensis HTCC2601]
 gi|114543434|gb|EAU46449.1| exonuclease, putative [Roseovarius sp. HTCC2601]
          Length = 204

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 47/180 (26%), Gaps = 33/180 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    L            L   L 
Sbjct: 19  VVAIDCET--------MGLEPHRD--RLCVVQLSGGDGNAHLVQVAKGQTEAPNLCRLLR 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           +  V  + H   F+   +   F          CT + +R          LK + + L   
Sbjct: 69  DECVLKLFHYGRFDIAAMYNAFG--ALAAPVYCTKIASRMVRTYTDRHGLKTLTQEL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +             +       +Y   DV    ++ + L+ + 
Sbjct: 124 ---------LSVDISKQQQSSDWGAETLTEAQ------RDYAASDVLHLHKLREALDGML 168


>gi|321468927|gb|EFX79910.1| hypothetical protein DAPPUDRAFT_304334 [Daphnia pulex]
          Length = 834

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 51/192 (26%), Gaps = 24/192 (12%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           ET   +DL       +    C++  +    D    + D +      Q L E   N  +  
Sbjct: 252 ETVIAVDLEAHSYRSFQGLTCLMQISTSSSD---YIIDTLELWDQLQPLNEVFCNPKIVK 308

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGK 127
           + H +  +   L+  F + +       T   A+  G    +L  +               
Sbjct: 309 IFHGADMDIQWLQRDFGIYV--VNLFDTYHAAKLLGFAQLSLSFLLRHY----------- 355

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
                  K         R  P           Y + D      I+++++     +     
Sbjct: 356 -CQVIADKQYQLADWRIRPLP------EQMVNYAREDTHYLGYIYEKMKKDLKMKGTGDN 408

Query: 188 LDQTINDRGYCV 199
           L   +      V
Sbjct: 409 LLTAVWQNSRLV 420


>gi|259502770|ref|ZP_05745672.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
 gi|259169273|gb|EEW53768.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           antri DSM 16041]
          Length = 178

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 31/147 (21%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET      S   L    +   + A++   +      +      W        
Sbjct: 1   MNFIAMDFETASGKRYSACSLALTIVRNNQIADEFYTL-----INPQTPFFWRNVQIHGI 55

Query: 46  ---DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
              D  + P  P+V +        D  ++AHN+ F+  VLK     + ++ P ++ + T+
Sbjct: 56  HERDVANAPTFPEVWEHIKGFYTPDKLVIAHNNRFDNGVLKSTLEHYGIEPPAYQTLDTV 115

Query: 98  VLARSNGLPSA---LKAVGEALKLSSQ 121
           V +R      +   L  V  AL +   
Sbjct: 116 VSSRRLLPGLSNYKLNTVCAALNIDLH 142


>gi|229472179|gb|ACQ72604.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALSYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|83858515|ref|ZP_00952037.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633]
 gi|83853338|gb|EAP91190.1| ribonuclease D [Oceanicaulis alexandrii HTCC2633]
          Length = 384

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 56/232 (24%), Gaps = 41/232 (17%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     DD  V +        + Q  
Sbjct: 22  YVAVDTEFMRESTFW---------------PQLCLIQAAGDDTEVLIDPLAEGLDL-QPF 65

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            + L + +V  V H    +  +        I       + + A + GL  +         
Sbjct: 66  YDLLTDQNVIKVFHACRQDLEIF-FHEGGGIIPKPLFDSQIAAMAVGLGDS--------- 115

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                      L+    K    +     +      +     EY   DVT  R++F  L  
Sbjct: 116 ------ISYDNLVRALVKVNLDKGSRFTDWSRRPLS-DKQKEYALADVTHLRDLFPILRE 168

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
             +K     +L     +     D A      +             + L    
Sbjct: 169 KLAKVGREAWL---AEEMKTLTDPATYEMHPEDAWKRLKLRKTTAKWLAGLK 217


>gi|167035116|ref|YP_001670347.1| ribonuclease D [Pseudomonas putida GB-1]
 gi|166861604|gb|ABZ00012.1| ribonuclease D [Pseudomonas putida GB-1]
          Length = 377

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 72/272 (26%), Gaps = 35/272 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  +     +I      D     L D  +     P  L + LE
Sbjct: 27  VAVDTE--------FMRVDTFYPKAGLIQIG---DGQRAFLIDPLLIGDWQP--LADLLE 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           ++ V  V H    +  VL               T + A    L  ++             
Sbjct: 74  DSGVVKVLHACSEDLEVLLRLTGKL--PQPLFDTQLAAGYLNLGFSMG------------ 119

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                 L+      E  +     +      +      Y   D     E+F  L P  S +
Sbjct: 120 ---YSRLVQDVLGIELPKGETRSDWLQRPLS-ETQVSYAAEDAVHLAELFTELRPRLSDD 175

Query: 183 QELWYLDQTINDRGYC---VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           +  W L+            V+    +   ++      +    L  L       +R  +  
Sbjct: 176 KYTWVLEDGAELVAALRREVEPETLYRDVKLAWKLAPQQLAVLRELCAWREREARHRDVP 235

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  E  L     ++      L+   ++ P
Sbjct: 236 RNRILKEHSLWPMAKSQPNNLSALAKIDEMHP 267


>gi|229472537|gb|ACQ72783.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 64/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+ + AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALLTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGNKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|229472319|gb|ACQ72674.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 59/274 (21%), Gaps = 97/274 (35%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    A+ G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  KDFRKLFQATPGQVMVGADLSGIELRMLAHYL-------ARYDAGRYAEVLLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    LN                     
Sbjct: 63  ADKIGISRKQVKTVTYAFLYGAGDAKL---GRSYDPQLNEKEAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      +  L   +    E            
Sbjct: 104 -------------------RKGKEIRQAYMDAVPGLETLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GYINLCDGRRCSVDGSH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMM----NATKAGYDIVLTVHDE 631
           +Q  +  +    M+    N  +     +  VHDE
Sbjct: 157 LQGSAGVLAKRWMLINHDNTRELCCSQLAFVHDE 190


>gi|218439906|ref|YP_002378235.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
 gi|218172634|gb|ACK71367.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
          Length = 308

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 68/244 (27%), Gaps = 37/244 (15%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
             L++D E+         L+   +  Y ED          +     ++D + +P +    
Sbjct: 21  KILWLDTESTDLNSKKSRLSLIQVLAYPED---------TNGSRTYIFDVLDNPDIVDYF 71

Query: 58  KE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            E  + N  +  + HN+  +   L              CTL L+++              
Sbjct: 72  IEKIMVNDQINKIFHNAQHDLQFL-----GGKKAKNVTCTLKLSKTI-----------PY 115

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRL 175
            +        K L         +    ++     +    +   +Y K D      I  RL
Sbjct: 116 HILPVPNHTLKTLTEYLTDF-KNVSKEEQTSDWSQRPLSQKQLDYAKMDPVYLAHIHGRL 174

Query: 176 EPLSSKEQELWYLDQTIN--DRGYCVDVA--LAHTLNQIVDVERTKLDQELESLTYGLVS 231
             L+ +       D       R   +     L  +    ++    K   + ++ T     
Sbjct: 175 LELNQQSNPDPNQDNLTEIGKRYQEIKPEWQLLKSEIDNLETR-AKNAMKAQNQTENFAF 233

Query: 232 SSRC 235
           +   
Sbjct: 234 TLSS 237


>gi|220917449|ref|YP_002492753.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955303|gb|ACL65687.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 288

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 17/116 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E+ S           Y E   V L           + D +   V P  L E L
Sbjct: 29  RVLALDTESNS--------FHVYRE--RVCLLQLSTRAQD-FVVDPISVDVRP--LGEIL 75

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEAL 116
            +    +V H + ++   L   +   IP  R   T++ AR  G     L A+ EA 
Sbjct: 76  CD-GREVVLHGADYDVRCLHREYGWRIP--RLFDTMIAARRLGRPGLGLSALVEAH 128


>gi|302501205|ref|XP_003012595.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
           CBS 112371]
 gi|291176154|gb|EFE31955.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
           CBS 112371]
          Length = 1069

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 47/180 (26%), Gaps = 33/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y     V L      +    +          QVL E  
Sbjct: 450 KEIAVDLE--------HHDSHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVF 499

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK-AVGEALKLS 119
            +  +  V H S  +   L+      + +     T   A +  LP  +LK  + E +   
Sbjct: 500 ADPSIIKVLHGSSMDVIWLQRDLG--LYLVGLFDTFHAASALQLPKKSLKFLLHEYVGFD 557

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R             +Y + D      IF RL    
Sbjct: 558 ADKQYQTADW-------------RIRPL------LAGMLDYARSDTHFLLYIFDRLRNQL 598


>gi|288958469|ref|YP_003448810.1| ribonuclease D [Azospirillum sp. B510]
 gi|288910777|dbj|BAI72266.1| ribonuclease D [Azospirillum sp. B510]
          Length = 396

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 72/270 (26%), Gaps = 45/270 (16%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L   G  D  V +        +   L
Sbjct: 22  YITVDTEFLREKTYW---------------PQLCLVQVGGPDGAVAIDPLAEGIDLT-PL 65

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              + +  V  V H +  +  +     +  IP H    T V A   G        GE++ 
Sbjct: 66  FALMSDPSVLKVFHAARQDVEIF-WHLSGQIP-HPLFDTQVAAMVCGF-------GESVG 116

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +   +     I +  +              HR        Y   DV   R  +++L+ 
Sbjct: 117 YETLVTKLAGARIDKSSRFTDWS---------HRPLTERQLTYALSDVIHLRPAYEKLKR 167

Query: 178 LS----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                         +    +   Y VD      L   V   + +    L+ L       +
Sbjct: 168 RLARSGRSHWLEEEMAILTDPATYRVDPDS-SYLRLKVRTNKPRFMAILKELAAWREREA 226

Query: 234 RCLEK-LKTWLFLETGLHLEDLTETTCQRV 262
           +  ++     L  E  L +     TT   +
Sbjct: 227 QRRDQPRSRVLRDEALLEIAAHAPTTVDDL 256


>gi|302789405|ref|XP_002976471.1| hypothetical protein SELMODRAFT_104837 [Selaginella moellendorffii]
 gi|300156101|gb|EFJ22731.1| hypothetical protein SELMODRAFT_104837 [Selaginella moellendorffii]
          Length = 328

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 53/189 (28%), Gaps = 24/189 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E    +DL        A    + +    F D  + L D       + Q  K ALE
Sbjct: 43  IGLDCE---GVDL--------ARHGRLCIMQLAFQDA-IYLVDAVQGGDALMQACKPALE 90

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL----KAVGEALKL 118
           +  VT V H+   +   L   F   I ++    T +      L              + L
Sbjct: 91  SPHVTKVVHDCKRDSEAL--YFQHGIKLNNVFDTQIAHSLIELQQGRQWIPDDCISFVDL 148

Query: 119 SSQ-KMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLE 176
            +  K   G   +A   K E    L    +         +       DV     I + + 
Sbjct: 149 LADAKYCVG---VAYDEKDEVRSLLRKDPEFWTHRPLTNMMKRAAADDVRFLLRIHRNMV 205

Query: 177 PLSSKEQEL 185
                    
Sbjct: 206 QRLDAFSAW 214


>gi|254566215|ref|XP_002490218.1| Exonuclease component of the nuclear exosome [Pichia pastoris
           GS115]
 gi|238030014|emb|CAY67937.1| Exonuclease component of the nuclear exosome [Pichia pastoris
           GS115]
 gi|328350615|emb|CCA37015.1| exosome complex exonuclease RRP6 [Pichia pastoris CBS 7435]
          Length = 717

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 54/203 (26%), Gaps = 42/203 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             + +D E     T   +               V L      +    + D +      Q 
Sbjct: 232 DVIAVDLEHHDLRTYYGL---------------VCLMQISTRNQD-YIVDTLKLRFKLQP 275

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115
           L +   +  +  V H ++ +   L+      + +     T   ++  G P  +L  + E 
Sbjct: 276 LNKVFTDPSIVKVFHGAFMDIIWLQRDLG--LYVVSLFDTFHASKLLGFPKHSLAYLLET 333

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
              +  K  +  +L     +  T                     Y + D      IF +L
Sbjct: 334 Y--AKFKTSKKYQLADWRVRPLTK----------------PLLAYARSDTHFLLYIFDQL 375

Query: 176 EPLSSKEQELWYLDQTINDRGYC 198
             +  +  +L  +          
Sbjct: 376 NNMLIESGKLSQVLYDSRQVALR 398


>gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 388

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 48/190 (25%), Gaps = 31/190 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E          G   Y     V L           + D +    +   L    E+
Sbjct: 29  ISIDTE--------SSGYYTYFS--KVCLIQISA-KGKNYIIDPLKLQNL-DGLGNLFED 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  + H++  +   LK  F      H    T   +R                     +
Sbjct: 77  KKILKIFHSAIDDIKALKKDFGF--KFHNIADTGFSSRLLD-------------HEQYSL 121

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L+  + K +  +     N        +   +Y   D      I+++++   +K  
Sbjct: 122 TY---LVDYYHKIKLSKKEQKSNWEKRPLE-KSQLQYAALDTVYLETIWEKMKEELTKRN 177

Query: 184 ELWYLDQTIN 193
                     
Sbjct: 178 LYEEAFSEFE 187


>gi|194039637|ref|XP_001927099.1| PREDICTED: DNA polymerase subunit gamma-1 [Sus scrofa]
          Length = 1224

 Score = 58.6 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/398 (11%), Positives = 104/398 (26%), Gaps = 44/398 (11%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R           GR+   +   Q + 
Sbjct: 778  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRHPAF----DEEGRYGAILP--QVVT 831

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 832  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAA 885

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 886  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQP 945

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +++       L       K        +    +    +       ++     T     
Sbjct: 946  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGEWLVRELDLPVDRTE---- 1001

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
               W        +   ++ +   +     K  +  +R        +       +      
Sbjct: 1002 -DGWISL-----QDLRKIQREASRKSRRKKWEVVAERAWTGGTESEMFNKLESIATSDTP 1055

Query: 567  SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNATKAGY- 622
                     +R+   +T +       +       +VQ+ + D   ++   M    +    
Sbjct: 1056 RTPVLGCRISRALEPSTVQGE-----FMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAI 1110

Query: 623  --DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
                 +++HDE+     + D + A+       +L   M
Sbjct: 1111 DGRFCISIHDEVRYLVREEDRYRAALALQVTNLLTRCM 1148


>gi|327308500|ref|XP_003238941.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
 gi|326459197|gb|EGD84650.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
          Length = 867

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 47/180 (26%), Gaps = 33/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y     V L      +    +          QVL E  
Sbjct: 263 KEIAVDLE--------HHDSHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVF 312

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK-AVGEALKLS 119
            +  +  V H S  +   L+      + +     T   A +  LP  +LK  + E +   
Sbjct: 313 ADPSIIKVLHGSSMDVIWLQRDLG--LYLVGLFDTFHAASALQLPKKSLKFLLHEYVGFD 370

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R             +Y + D      IF RL    
Sbjct: 371 ADKQYQTADW-------------RIRPL------LAGMLDYARSDTHFLLYIFDRLRNQL 411


>gi|255637101|gb|ACU18882.1| unknown [Glycine max]
          Length = 278

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 56/188 (29%), Gaps = 17/188 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G                F D  V L D       +    K AL
Sbjct: 60  VIGFDCE---GVDLCRKGTLCVM--------QLAFPDA-VYLVDAIEGGEELIIACKPAL 107

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+  +T V H+   +   L   F   I ++  + T +           K + +       
Sbjct: 108 ESNYITKVIHDCKRDSEAL--YFQFGIKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVG 165

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            + + +     + + E    L  ++     HR            DV     I+ ++    
Sbjct: 166 LLADPRYCGKSYDEKEEVRVLLRQDPKFWRHRPLSEQMVRAAADDVRFLLYIYHQMMEKL 225

Query: 180 SKEQELWY 187
           ++    + 
Sbjct: 226 NERSLWYL 233


>gi|149690747|ref|XP_001503097.1| PREDICTED: similar to DNA polymerase subunit gamma-1 (Mitochondrial
            DNA polymerase catalytic subunit) (PolG-alpha) [Equus
            caballus]
          Length = 1219

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/406 (12%), Positives = 104/406 (25%), Gaps = 60/406 (14%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R           GR+   +   Q + 
Sbjct: 773  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRHPDY----DEEGRYGAILP--QVVT 826

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 827  AGTITRRAVE------PTWLTASNARPDRVGSEMKAMVQAPPGYVLVGADVDSQELWIAA 880

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 881  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQP 940

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA---- 502
              +++       L       K        +    +    +       ++     T     
Sbjct: 941  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSDEGEWLVRELDLPVDRTEDGWV 1000

Query: 503  -CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              + ++K  R+        W +     E+    G       + +            L   
Sbjct: 1001 SLQDLRKIQREASR--KSNWKKWEVVAERAWMGGTESEMFNKLESIATSDTPCTPVLGCR 1058

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRD---ILAEGMM 615
                                  +R L      G  +      +VQ+ + D   ++   M 
Sbjct: 1059 ---------------------ISRALEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMK 1097

Query: 616  NATKAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
               +         +++HDE+     + D + A+       +L   M
Sbjct: 1098 WLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1143


>gi|241948847|ref|XP_002417146.1| exosome complex exonuclease RRP6, putative; ribsomal RNA processing
           protein 6, putative [Candida dubliniensis CD36]
 gi|223640484|emb|CAX44736.1| exosome complex exonuclease RRP6, putative [Candida dubliniensis
           CD36]
          Length = 776

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 53/198 (26%), Gaps = 34/198 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D E              Y     ++        +    + D +       VL E  
Sbjct: 250 EIAVDLE-----------HHDYRSYYGIVCLMQISSREQD-WIVDTLVLRDDLTVLNEVF 297

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
            + ++  V H ++ +   L+      + +     T   +R+ G P  +L  + E      
Sbjct: 298 ADPNIVKVFHGAFMDIIWLQRDLG--LYVVSLFDTYHASRALGFPRFSLAYLLEVYAHF- 354

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +L     +  +                     Y + D      I+ +L+    
Sbjct: 355 -KTSKQYQLADWRIRPLS----------------PPMLAYARSDTHFLLFIYDQLKNKLI 397

Query: 181 KEQELWYLDQTINDRGYC 198
              +L  +          
Sbjct: 398 DANKLAQVLYDSRQVAKR 415


>gi|195472713|ref|XP_002088644.1| GE11427 [Drosophila yakuba]
 gi|194174745|gb|EDW88356.1| GE11427 [Drosophila yakuba]
          Length = 1145

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 73/266 (27%), Gaps = 29/266 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D       P  L     +    +V HN  ++R  LK  + ++    R++ T+ L      
Sbjct: 233 DSERPHYTPDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSG 292

Query: 106 PSA-----LKA----VGEALKLSSQ----KMEEGKELI--ARFCKGETHECLYDRNKPNH 150
            ++     LK+      E L    Q     + E   L         E      +      
Sbjct: 293 VTSYQRAMLKSKKEPAAEDLGWLEQSSLNSLVEVHRLYCGGDALSKEPRNIFVEGTLEQV 352

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-TIND----------RGYCV 199
           R++++    YC  DV  T  I + L PL +            +                +
Sbjct: 353 RQSFQSLTNYCASDVEATHRILRVLYPLYADRFPHPASLAGMLEMGSAYLPVNSNWERYI 412

Query: 200 DVALA--HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
             A      L+        +  +E  SL              + W   E  L      + 
Sbjct: 413 REAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKP 472

Query: 258 TCQRVLSSNKKLTPQAIQVFNNRMRA 283
               V   N   TP+  ++       
Sbjct: 473 -LPTVEHKNAGNTPEERRLQAKFQHL 497



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 80/308 (25%), Gaps = 38/308 (12%)

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVT 411
               +   +RS V A  G +LV AD+   E  + +     +  GE               +
Sbjct: 785  PDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKS 844

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +   ++  A+     R   KV+  A  Y  G    + +        +      K    
Sbjct: 845  NGSDMHSI-TAKAVGISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKM 903

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                +    +                      + ++      +        E  +   Q 
Sbjct: 904  FSITKGKRVY---------------RLREEFHDELEDRAYSSY--------EASRLAIQR 940

Query: 532  IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  +   +                 +   S     +     +R+          +E 
Sbjct: 941  NRTLAEV-FHRPNWQGGTESAMFNRLEEIATGSEPRTPFLGGRLSRALE--ADGGPEQEQ 997

Query: 592  TYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS--- 645
             +       +VQ+ + D   ++   M     +     L+ HDE+     +     A+   
Sbjct: 998  RFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAM 1057

Query: 646  MLYHLMTS 653
             + +LMT 
Sbjct: 1058 HITNLMTR 1065


>gi|84662629|ref|YP_453594.1| putative DNA polymerase III epsilon subunit [Xanthomonas phage OP1]
 gi|84570678|dbj|BAE72741.1| putative DNA polymerase III epsilon subunit [Xanthomonas oryzae
           phage OP1]
          Length = 279

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 59/203 (29%), Gaps = 31/203 (15%)

Query: 2   ATLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDC------V 48
             L ID ET         I           +D  ++ +   +   + V   D        
Sbjct: 25  KILHIDIETSMMLVQAWGIGKQFIAYDDIVQDWNILSYCAKWHGVNTVLYDDLREQSNPT 84

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSY-FE-RTVLKACFNLDIPIH---RWICTLVLARSN 103
            D  +   L + L   DV  VAHN   F+ R +        +P     R + TL+ +R  
Sbjct: 85  KDKRLCTGLAKVLTEADVA-VAHNGKKFDIRKIRARMSMNKLPPIPDTRIVDTLIESRKC 143

Query: 104 GLP--SALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                  L  +         +K++ GK     F            N      AW    +Y
Sbjct: 144 FAHTSHKLAYLSTHFGDDGLRKLDHGK-----FAGKALWRECQKGNLA----AWEEMKKY 194

Query: 161 CKGDVTVTREIFKRLEPLSSKEQ 183
              DV     ++  L       Q
Sbjct: 195 NVVDVLAMESMYSELRGWFQGAQ 217


>gi|2289912|gb|AAC47658.1| mitochondrial DNA polymerase catalytic subunit precursor
           [Drosophila melanogaster]
          Length = 1145

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 67/240 (27%), Gaps = 28/240 (11%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D       P  L     +    +V HN  ++R  LK  + ++    R++ T+ L      
Sbjct: 233 DSERPHYTPDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSG 292

Query: 106 PSA-----LKA----VGEALKLSSQ----KMEEGKELI--ARFCKGETHECLYDRNKPNH 150
            ++     LK+      E L    Q     + E   L         E      +      
Sbjct: 293 VTSYQRAMLKSKKEPAAEDLGWLEQSPLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQV 352

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-TIND----------RGYCV 199
           R++++    YC  DV  T  I + L PL ++           +                +
Sbjct: 353 RQSFQSLTNYCASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYI 412

Query: 200 DVALA--HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
             A      L+        +  +E  SL              + W   E  L      + 
Sbjct: 413 REAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKP 472



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 80/308 (25%), Gaps = 38/308 (12%)

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVT 411
               +   +RS V A  G +LV AD+   E  + +     +  GE               +
Sbjct: 785  PDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKS 844

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +   ++  A+     R   KV+  A  Y  G    + +        +      K    
Sbjct: 845  NGSDMHSI-TAKAVGISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKM 903

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                +    +                      + ++      +        E  +   Q 
Sbjct: 904  FSITKGKRVY---------------RLREEFHDELEDRAYSSY--------EASRLAIQR 940

Query: 532  IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  +   +                 +   S     +     +R+          +E 
Sbjct: 941  NRTLAEV-FHRPNWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALE--ADTGPEQEQ 997

Query: 592  TYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS--- 645
             +       +VQ+ + D   ++   M     +     L+ HDE+     +     A+   
Sbjct: 998  RFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAM 1057

Query: 646  MLYHLMTS 653
             + +LMT 
Sbjct: 1058 HITNLMTR 1065


>gi|116207922|ref|XP_001229770.1| hypothetical protein CHGG_03254 [Chaetomium globosum CBS 148.51]
 gi|88183851|gb|EAQ91319.1| hypothetical protein CHGG_03254 [Chaetomium globosum CBS 148.51]
          Length = 1082

 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 93/358 (25%), Gaps = 29/358 (8%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV-----ALAHTLNQIVDVERTKLDQE 221
           +   +     PL   ++  W       D     D        A    + +  ++  +  +
Sbjct: 530 LLLRLAWDGYPLFWSDKHGWTFRVPRGDAKKYTDKLMEPCDFAEETIEALKEDKDHVYFK 589

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           L          +  L K     F +  L       +  +  L  N           + R 
Sbjct: 590 LPHKDGPTARCATPLAKSYLSYFEKGTL---SSEYSYAKEALEMNAS----CSYWISARE 642

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQ 341
           R     V+  + L            + Q    S +G   G    PQ +P  + +   ++ 
Sbjct: 643 RIKSQLVVYQDQLPSTAGK------SAQTSEESTSGEPVGGFILPQIIPMGTITRRAVEN 696

Query: 342 IITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKA 401
                  +  +       +   +++ V A  G   V AD+   E   +A + G+      
Sbjct: 697 TWLTASNAKKN------RVGSELKAMVRAPPGYVFVGADVDSEEL-WIASVIGDSTFRIH 749

Query: 402 FETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
                        ++        T       R   K+      Y  G K   ++      
Sbjct: 750 GGNAIGFMTLEGTKAAGTDLHSRTASILGITRNDAKIFNYGRIYGAGLKFAAQLLRQFNP 809

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           +L+    L          +  +   R + +        + F+    E   +    +  
Sbjct: 810 SLSETETLQIATKLYATTKGTKTNRRVLHKRTFWRGGTESFVFNKLEEFAEQEHPRTP 867


>gi|302657746|ref|XP_003020587.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
           HKI 0517]
 gi|291184437|gb|EFE39969.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
           HKI 0517]
          Length = 881

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 33/185 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y     V L      +    +          QVL E  
Sbjct: 266 KEIAVDLE--------HHDSHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVF 315

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK-AVGEALKLS 119
            +  +  V H S  +   L+      + +     T   A +  LP  +LK  + E +   
Sbjct: 316 ADPSIIKVLHGSSMDVIWLQRDLG--LYLVGLFDTFHAASALQLPKKSLKFLLHEYVGFD 373

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R             +Y + D      IF RL    
Sbjct: 374 ADKQYQTADW-------------RIRPL------LAGMLDYARSDTHFLLYIFDRLRNQL 414

Query: 180 SKEQE 184
            +   
Sbjct: 415 LELLP 419


>gi|254466167|ref|ZP_05079578.1| ribonuclease D [Rhodobacterales bacterium Y4I]
 gi|206687075|gb|EDZ47557.1| ribonuclease D [Rhodobacterales bacterium Y4I]
          Length = 385

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 69/275 (25%), Gaps = 51/275 (18%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMP 54
            + +D E     T                   + L    F    +    L D + D +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAFSGNGEDDAVLVDPLADGISL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L     + +V  V H +  +  +     +  +       T V A   G        GE
Sbjct: 67  EPLYALFRDENVVKVFHAARQDLEIF--WVDAGVFPKPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                       + L+ +  K    +     +      +      Y   DVT  R+I++ 
Sbjct: 118 QAGY--------ETLVRKIVKQGLDKTSRFTDWSRRPLS-EAQKTYALADVTHLRKIYEF 168

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE------LESLTYG 228
           L     K     ++     +     D A      Q                  +  L   
Sbjct: 169 LAAELEKSGRSHWV---AEELQVLTDPATYDIQPQEAWQRVKTRTNSGKFLAVVRELAAF 225

Query: 229 LVSSSRCLEKLKTWLFLETGL-HLEDLTETTCQRV 262
               ++     +  +F +  L  L      T   +
Sbjct: 226 REVYAQSNNVPRNRVFKDDALVELASTKPRTAAEL 260


>gi|229472391|gb|ACQ72710.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 63/272 (23%), Gaps = 99/272 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHD 630
            +  +  + M      +   +     +  VHD
Sbjct: 160 SAGCVAKQWMVHTHDVIKLNQIEAYQLAFVHD 191


>gi|229472289|gb|ACQ72659.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 58/275 (21%), Gaps = 99/275 (36%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRRLFKASPGQIMVGADLSGIELRMLAHYL-------ARYDEGRYADVLLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L+                     
Sbjct: 63  ADKIGISRRQVKTVTYAFLYGAGDAKL---GKSYDAQLSESQAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L   +    E            
Sbjct: 104 -------------------KKGKEIRQAYMDAVPGLEKLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GFINLCDGRRCTVDGAH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMMNATKAGYD-----IVLTVHDE 631
           +Q  +  +    ++              +  VHDE
Sbjct: 157 LQGSAGVLAKRWLL-INHNNTRELCCSQLAFVHDE 190


>gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 240

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 33/175 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLK- 58
           M  +  D ET    +       +  E   + LF      + + ++    D  + P  L  
Sbjct: 1   MREIIFDTETTGLDN----RADRIIEIGGIELFNHFPTGNTIHIFINPGDQKVHPDALAV 56

Query: 59  -----EALENT---------------DVTIVAHNSYFERTVL-KACFNLDIP---IHRWI 94
                E L++                D   +AHN+ F+   +      + +P     R +
Sbjct: 57  HGITDEFLKDKQPFAEVAEQILTFFGDAKWIAHNATFDMGFINAEFARIGLPPILPERVL 116

Query: 95  CTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
            TL +AR      P++L A+     + +  + + G  L +        E +  R 
Sbjct: 117 DTLSMARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQ 171


>gi|229472361|gb|ACQ72695.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 64/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+ + AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALLTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G +       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDEKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVRSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|254511557|ref|ZP_05123624.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535268|gb|EEE38256.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 240

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 54/197 (27%), Gaps = 58/197 (29%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMP 54
           M  + +D ET         G    + D  ++      +                 +  MP
Sbjct: 1   MREIVLDTETT--------GFDPESGD-RIVEIG-AVELWNHVATGETYHVYINPERGMP 50

Query: 55  QVLK-------EALENTDVT--------------IVA--------------HNSYFERTV 79
                      + LEN                   V               HN+ F+   
Sbjct: 51  DEAFGVHGIGPDLLENPRPPEKGEVTLKDKPVFAKVGQGFRDFVGDAQLVIHNASFDMKF 110

Query: 80  LKACFNLD----IPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIAR 132
           L A         IP+ + I TL +A  R  G P++L A+     + +  ++  G  L + 
Sbjct: 111 LNAELGWMGVPLIPMAQAIDTLAIARKRFPGSPASLDALCRRFGIDNSNRVLHGALLDSE 170

Query: 133 FCKGETHECLYDRNKPN 149
                  E +  R    
Sbjct: 171 ILAEVYLELIGGRQPDF 187


>gi|170726464|ref|YP_001760490.1| ribonuclease D [Shewanella woodyi ATCC 51908]
 gi|169811811|gb|ACA86395.1| ribonuclease D [Shewanella woodyi ATCC 51908]
          Length = 369

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 84/279 (30%), Gaps = 31/279 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L    +D   + L D V    +       L    +T + H+   +  V     N  
Sbjct: 40  ARLGLIQ-AYDGKTLALIDPVAVSDL-SGFWSLLTEPSITTILHSCSEDLEVFAR--NGQ 95

Query: 88  IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
               +   + + A   G    L   K V + L +   K E   + + R            
Sbjct: 96  CQPVKLFDSQIAAALCGFGHGLGYAKLVEQTLNIPLDKGESRTDWMKRPLS--------- 146

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND----RGYCVD 200
                          Y   DV    +++ +L     ++  L ++ +        R    D
Sbjct: 147 ----------EAQLNYAANDVYYLYQLYPQLVEKLEEQNRLGWVFEEGERMTQGRLSPPD 196

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ 260
           + LA+   +       K    L+ L    +S +   +    ++  + GL      +    
Sbjct: 197 LELAYLRVKNAFQLSPKQLAYLKVLAKWRLSKALSRDLAVGFVVKDHGLIGLAKKQPKNS 256

Query: 261 RVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
             L    +LT Q  +V          A   L+ L +A++
Sbjct: 257 SELYKMIELTEQEKRVHGK-DLIRLLATADLDNLPDAID 294


>gi|195338293|ref|XP_002035759.1| GM15104 [Drosophila sechellia]
 gi|194129639|gb|EDW51682.1| GM15104 [Drosophila sechellia]
          Length = 1145

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 67/240 (27%), Gaps = 28/240 (11%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D       P  L     +    +V HN  ++R  LK  + ++    R++ T+ L      
Sbjct: 233 DSERPHYTPDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSG 292

Query: 106 PSA-----LKA----VGEALKLSSQ----KMEEGKELI--ARFCKGETHECLYDRNKPNH 150
            ++     LK+      E L    Q     + E   L         E      +      
Sbjct: 293 VTSYQRAMLKSKKEPAAEDLGWLEQSSLNSLVEVHRLYCGGDALSKEPRNIFVEGTLEQV 352

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-TIND----------RGYCV 199
           R++++    YC  DV  T  I + L PL ++           +                +
Sbjct: 353 RQSFQSLTNYCASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYI 412

Query: 200 DVALA--HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
             A      L+        +  +E  SL              + W   E  L      + 
Sbjct: 413 REAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKP 472



 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/310 (11%), Positives = 81/310 (26%), Gaps = 42/310 (13%)

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVT 411
               +   +RS V A  G +LV AD+   E  + +     +  GE               +
Sbjct: 785  PDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKS 844

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +   ++  A+     R   KV+  A  Y  G    + +        +      K    
Sbjct: 845  NGSDMHSI-TAKAVGISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKM 903

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                +    +                      + +       +           +A    
Sbjct: 904  FSITKGKRVY---------------RLREEFHDELDDRAYSSY-----------EASRLA 937

Query: 532  IENGKAII--ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
            I+  + +     +                 +   S     +     +R+    T     +
Sbjct: 938  IQRNRTVAEVFHRPNWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALEADTGPDQEQ 997

Query: 590  EYTYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS- 645
             +         +VQ+ + D   ++   M     +     L+ HDE+     +     A+ 
Sbjct: 998  RFL--PTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAAL 1055

Query: 646  --MLYHLMTS 653
               + +LMT 
Sbjct: 1056 AMHITNLMTR 1065


>gi|148807541|gb|ABR13573.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|148807546|gb|ABR13575.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 33/171 (19%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 45  EYNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 100

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +                 
Sbjct: 101 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQV----------------- 141

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                             RS     EG KL+  D +G+E R+LA    ++ 
Sbjct: 142 -------ASVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 185


>gi|260913969|ref|ZP_05920443.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
 gi|260632056|gb|EEX50233.1| ribonuclease D [Pasteurella dagmatis ATCC 43325]
          Length = 383

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 78/275 (28%), Gaps = 27/275 (9%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           +D   V L D +            L N +V  V H    +  V +  +         I T
Sbjct: 58  YDGERVSLIDPLSIQDF-SPFIALLANQNVLKVLHACSEDLEVFQHYYQQ--MPTPMIDT 114

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A     P++                    LI  + + E  +     +      + + 
Sbjct: 115 QIMASFLSFPNS---------------TGLATLIQHYFQLEIDKGASRTDWLARPLSDKQ 159

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND----RGYCVDVALAHTLNQIVD 212
              Y   DV     +++R++    +      ++         R    D   A+       
Sbjct: 160 LV-YAAADVWYLLPLYQRMQQDLQQTPWQSAVENDCEMLLAKREQGKDPEFAYLNIPNAW 218

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWL--FLETGLHLEDLTETTCQRVLSSNKKLT 270
               +    L+ L    +  +   +    ++          ++  + T + +      L 
Sbjct: 219 RLNQQELMRLKVLAKWRLEDAMKRDLALNFVVRGEHLWAVAKNNPKHTSELLALGLTALE 278

Query: 271 PQA--IQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
            +    ++ +   +A+R        L+  +  D R
Sbjct: 279 VRIHGKKILHLLSQANRMEEAHYPNLITRVVDDSR 313


>gi|115658831|ref|XP_001188956.1| PREDICTED: similar to DNA polymerase N, partial [Strongylocentrotus
           purpuratus]
 gi|115686030|ref|XP_797000.2| PREDICTED: similar to DNA polymerase N, partial [Strongylocentrotus
           purpuratus]
          Length = 48

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 605 VSRDILAEGMMNATKA-------GYDIVLTVHDEIVCETPDTDEFNAS 645
            + DI    M++  K           +++ +HDE++ E  D D     
Sbjct: 1   SAADICKLAMIHIMKVLSEKNTVRARLLVQIHDELLFEVHDEDINEVK 48


>gi|86158027|ref|YP_464812.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774538|gb|ABC81375.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 294

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 51/174 (29%), Gaps = 35/174 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E+ S           Y E   V L           + D +   V P  L E L
Sbjct: 33  RVLALDTESNS--------FHVYRE--RVCLLQLSTRTQD-FVVDPISVDVRP--LGEIL 79

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSS 120
            +    +V H + ++   L   +   IP  R   T++ AR  G     L A+ E+     
Sbjct: 80  CD-GREVVLHGADYDVRCLHREYGWRIP--RLFDTMIAARRLGRPGLGLSALVESH---- 132

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                G  L   F           R     + A      Y   D      +F  
Sbjct: 133 ----FGVRLSKAF----QRSDWGRRPLTPDQLA------YAALDTHFLLPLFDL 172


>gi|87124930|ref|ZP_01080777.1| putative ribonuclease D [Synechococcus sp. RS9917]
 gi|86167250|gb|EAQ68510.1| putative ribonuclease D [Synechococcus sp. RS9917]
          Length = 213

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 51/200 (25%), Gaps = 36/200 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E          G+    +   + L      D  V              LK  +E 
Sbjct: 31  LAVDTE--------AMGLVHGRD--RLCLVQLCDGDDNVSCVRIGLGQCEAPRLKALMEA 80

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEAL-KLS 119
             V  V H + F+   L +   + +      CT V +R          LK V   L  + 
Sbjct: 81  AAVEKVFHFARFDVAALASGLGIAVDP--IFCTKVASRLARTYSPKHGLKEVVLELVGVE 138

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                       E       Y   D        +RLE + 
Sbjct: 139 LDKQAQSSDWGR------------------VEELSEAQLAYAANDARYLLPARERLEVML 180

Query: 180 SKEQELWYLDQTINDRGYCV 199
              +E  +       R   V
Sbjct: 181 --RREGRWELAQRCFRCIPV 198


>gi|224079457|ref|XP_002190659.1| PREDICTED: exosome component 10, partial [Taeniopygia guttata]
          Length = 504

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 34/181 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E              +    C++  +   +D    + D +       +L E  
Sbjct: 312 KEFALDLE--------HHSYRSFLGLTCLMQISTRTED---FIIDTLALRSDMNILNETF 360

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLS 119
            +  +  V H +  +   L+  F   + +     T   AR   L   +L  + +    + 
Sbjct: 361 TDPAIVKVLHGADSDVEWLQRDFG--LYLVNVFDTHQAARLLNLGRHSLDHLLKLYCGVD 418

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R  P           Y + D      I+ ++  L 
Sbjct: 419 ADKKYQLADW-------------RIRPLP------EEMIRYARDDTHYLLYIYDKVRELL 459

Query: 180 S 180
            
Sbjct: 460 W 460


>gi|91762366|ref|ZP_01264331.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718168|gb|EAS84818.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1002]
          Length = 203

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 52/175 (29%), Gaps = 18/175 (10%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           + L      +    +     +      L + L +  +T + H    +   +K        
Sbjct: 38  LCLIQISTGNSDAHIIQLDREKYDAPNLNKVLSDESITKIFHYGRADMAHIKHYL--KTE 95

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            +  + T + ++          +  +   S       K LI  F           ++   
Sbjct: 96  TNNILDTKIASK----------LARSYSDS----HSLKTLIKEFM--NVDVSKQFQSSDF 139

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
             E      +YC  DV    +I + L  +  +E+ +      +      VD+ LA
Sbjct: 140 GGELSPAQLKYCANDVIYLHKIHEELNKILVREKRIDLYKSCLAFLKTRVDLDLA 194


>gi|222825102|dbj|BAH22259.1| putative ribonuclease D [Wolbachia endosymbiont of Cadra cautella]
          Length = 394

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 55/206 (26%), Gaps = 37/206 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E     +LT            + L    +      + D +   +    +K+ +
Sbjct: 22  KFIAIDTE-FIRNNLTYY--------PKLSLIQISY-GEKSFIVDALVPEIDLSFIKKMM 71

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA----RSNGLPSALKAVGEALK 117
            N  +  V H+   +   L   F           T V A      +              
Sbjct: 72  LNQGIIKVFHSCRQDIESLLTVF--KCVPTPIFDTQVAAMFCHYYHDF------------ 117

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K+ E  + IA       +     R     +        Y   DV    ++++ L  
Sbjct: 118 IGYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLD------YAINDVVYLYDLYQILCN 171

Query: 178 LSSKEQELWYLDQTINDRGYCVDVAL 203
              +   + +      +    VD+  
Sbjct: 172 KLEESNRMSWF---QEEMELLVDINK 194


>gi|256848055|ref|ZP_05553499.1| exonuclease RNase T and DNA polymerase III [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715115|gb|EEU30092.1| exonuclease RNase T and DNA polymerase III [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 178

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LFA----FGFDDHPVELW---DC 47
           M  + +DFET SP   + C +      D  ++     L      F + +  +      D 
Sbjct: 1   MNFIAMDFETASPKRYSACSLSLAIVRDNQIVDEFYSLINPQTPFNWRNIQIHGIHERDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P+ P+V K        D  ++AHN+ F+ +VLK     + +  P ++ + TL  ++ 
Sbjct: 61  ANAPIFPEVWKHIAPFYTPDKLVIAHNATFDNSVLKNTLEHYKITPPAYQTLDTLRTSQK 120

Query: 103 N---GLPSALKAVGEALKLS 119
                    L  V +ALK+ 
Sbjct: 121 LLPRLPNHKLNTVADALKIE 140


>gi|219118334|ref|XP_002179944.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408997|gb|EEC48930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 700

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 60/219 (27%), Gaps = 29/219 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEAL 61
           L  D E+ +    T+             L     D     + D +   V  +V  L    
Sbjct: 258 LAFDVESYNKSKYTQLT----------CLLQLSTDHGMAYVIDPLAPGVFEEVGGLAPIF 307

Query: 62  ENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEALKLS 119
            + D+  V H+    +   L   F + +       T   A+   L    L AV E   + 
Sbjct: 308 ADPDIVKVGHSIGGLDVRSLHRDFGIFV--INAFDTYEAAKVLCLESHGLAAVCEHYGM- 364

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                +  +L               R             +Y + DV    E+   +    
Sbjct: 365 -----KYTDLYKSLKNEYQTCDWRARPLT------GPMIQYGRFDVHFLIELRMLMIRDL 413

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
           +K   L+ +          +       +N +  V+  + 
Sbjct: 414 TKTY-LFEIKPAEELHESRMVADTLAAINSMAIVKMEEQ 451


>gi|150015899|ref|YP_001308153.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902364|gb|ABR33197.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 209

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 38/133 (28%), Gaps = 37/133 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV------------------------CVILFAFG 36
           M  LF D ET S    + C +     D                          +  F+  
Sbjct: 1   MKLLFFDTETTSIKPGSICQLSYITVDASTKPQITTGKNFFFTVDEMDPSAKEIHGFSL- 59

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIH 91
                 +L++         ++ E LE+  T   ++ HN  F+   LK        D    
Sbjct: 60  -----EKLYELSDGQYFEDLVPEFLEDFMTADFLIGHNVNFDVRFLKHELLSLGEDFYPK 114

Query: 92  RWICTLVLARSNG 104
              CT+  A    
Sbjct: 115 NVFCTM--AYYRD 125


>gi|296117272|ref|ZP_06835863.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
 gi|295976165|gb|EFG82952.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
          Length = 421

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 51/195 (26%), Gaps = 41/195 (21%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + ID E     T                   + L         V + D +   +    L 
Sbjct: 55  ITIDTEFVRERTYW---------------PELCLVQLA-SADEVVVVDALAPGMDLAPLG 98

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V  V H +  +  +    F+          T V A   G        G+ +  
Sbjct: 99  ELLADEGVIKVFHAARQDLEIFLHLFDRL--PQPLFDTQVAAMVAGY-------GDQVGY 149

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF-GEYCKGDVTVTREIFKRLEP 177
            S         I              R              EY   DVT  RE+++RL  
Sbjct: 150 DSLVASVVGAQID----------KSHRFSDWAARPLSAAQIEYAAADVTYLREVYQRLVA 199

Query: 178 LSSKEQELWYLDQTI 192
              +E    ++   +
Sbjct: 200 QLDREGRKDWMTAEM 214


>gi|229472355|gb|ACQ72692.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRCCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  +HDE
Sbjct: 160 SAGCVAKLWMVHTHDVIKLNQIEAYQLAFIHDE 192


>gi|170041336|ref|XP_001848422.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167864931|gb|EDS28314.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 982

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 60/215 (27%), Gaps = 21/215 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-HDPVMPQV-LKEA 60
            +  D E    I+L   G         + +   G       ++D      ++P   +K+ 
Sbjct: 505 VISFDCE---GINLGVRG--------QITMIQLGTTRGEAFIFDVATCPDMVPHGGIKQV 553

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE   V  V H+   +   L   F + +       T             K V +   +S 
Sbjct: 554 LEAEKVIKVIHDCRNDSVNLYNQFQIMLR--NVFDTQSAHAVLQFQDQGKQVYKVKNVSL 611

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLS 179
             + E         K +         K   R    R    Y  GDV +       L   +
Sbjct: 612 NTLCEMYNATVNPMKDQLKNVYRRDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNMAT 671

Query: 180 SKEQELWYLDQTIN-----DRGYCVDVALAHTLNQ 209
           S + E   L   +           VDV +     +
Sbjct: 672 SIKPEFRELLAELCTEQILMLIRPVDVKMRKKQRK 706


>gi|195397702|ref|XP_002057467.1| GJ18089 [Drosophila virilis]
 gi|194141121|gb|EDW57540.1| GJ18089 [Drosophila virilis]
          Length = 1150

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 66/605 (10%), Positives = 146/605 (24%), Gaps = 94/605 (15%)

Query: 45  WDCVHDPV---MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL---- 97
            D   +         L          +V HN  ++R  L+  + ++    R++ T+    
Sbjct: 229 IDVDQNERPHYTLDELIPLGCGEPGLVVGHNVSYDRARLREQYLIEDTGTRFVDTMSLHM 288

Query: 98  ----VLARSNGLPSALKAVG-EALKLSSQK----MEEGKELI--ARFCKGETHECLYDRN 146
               + +    +  + K    E L    Q     + +   L         E      +  
Sbjct: 289 CVSGITSYQRAMLKSKKEPAEEDLSWLEQSALNNLVDVHRLYCGGEPLSKEPRNIFVEGT 348

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
               R+ ++    YC GDV  T  I  +L P+ +                      +   
Sbjct: 349 LEQVRQQFQSLVNYCAGDVEATHRILTKLYPMFAARFPHPVTLAG-----------MLEM 397

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
            +  + V  +  ++ +              +     L +E   HL        +   +  
Sbjct: 398 GSAYLPVN-SNWERYIRD-----------AQLTYEDLSIEAKYHLGRR----AEEACALL 441

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLNTLVEA------------MNSDGRLRGTLQFLGAS 314
                Q  Q             LKL  L +             +N + R           
Sbjct: 442 HDE--QYRQHLWLWDEDWSVQSLKLKQLPKRKQLPTVHLLEQELNPEQRRLQRKFQHLYD 499

Query: 315 RTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGK 374
           +              P+  R                 ++ +P                  
Sbjct: 500 QRALLPARRPLLPGYPQWYRKLCRKPPTCYTDDQPEEANVEP-----------------W 542

Query: 375 KLVVADLA---GIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
                D++    I  ++L+            E G    V   +   +       +     
Sbjct: 543 TPGACDISTGMQIAPKLLSLCWEGYPLHYQREHGWGFLVPFRSVECSGNSKLPIEQLLTR 602

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
             + E A  Y  G      M           +         +  +  E   +       +
Sbjct: 603 CAIPEFARQYAAGEDGELAMDMLPKQIDEHLSKRQFYKKISQRQQQLEQNYKGSGVWCNQ 662

Query: 492 HAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI--IARKRRDVPLV 549
              +  F      +   ++R  +    +    L++  E  + +G      A +  ++  +
Sbjct: 663 VLDDCCFFLKLPHKNGPSFRVGNPLSKDF---LNKFSEHALSSGDPTCQAAARVIEIARM 719

Query: 550 YMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDI 609
                 N   ++      L   ++ +             R   YG  + + +V      +
Sbjct: 720 MSYWRNNQDRILGQMVVWLQAEELPSE------LRIHAKRMA-YGAIVPQIVVAGT---L 769

Query: 610 LAEGM 614
               M
Sbjct: 770 TRRAM 774



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 84/295 (28%), Gaps = 35/295 (11%)

Query: 360  ISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVTTYA 414
            I   +RS V A  G KLV AD+   E  + +     +  GE               +  +
Sbjct: 789  IGSELRSMVQAPPGYKLVGADVDSQELWIASVLGDAYAHGEHGATPLGWMTLSGSKSNGS 848

Query: 415  RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
               ++  A+V    R   KV+  A  Y  G +  + +       L+      K       
Sbjct: 849  DMHSI-TAKVVGISRDHAKVLNYARIYGAGQQFAETLLQQFNPTLSATEAKAKAMKMFAA 907

Query: 475  WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
             +    +   ++E   +   +  +     +R+  A ++                  +   
Sbjct: 908  TKGKRVY--RLREEFHDEQEDRPYSSYEAKRL--ALQRNRPVGEVFHRP-------SWHG 956

Query: 535  GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
            G       R +      + +   L   L    S      G +                + 
Sbjct: 957  GTESAMFNRLEEIATREQPETPFLNCRL----SRALESHGESDQEQR-----------FL 1001

Query: 595  GKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                  +VQ+ + D   ++   M           L+ HDE+     D     A++
Sbjct: 1002 PTRVNWVVQSGAVDFLHLMLVSMRWLLGTHARFCLSFHDELRYLVKDELAAKAAL 1056


>gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
 gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
          Length = 388

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 33/187 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E          G   +     + L      DH   +         P  L   L
Sbjct: 26  RAIALDTE----------GASFHRFVDRIYLLQLSTADHEAVIDPLPIG--TPTRLGVLL 73

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
           E+  V +V H++ ++  +L+  +     +     T V A+  G+ +  L A+ E      
Sbjct: 74  EDPQVEVVLHDADYDLRLLRQDYGW--RVTHLFDTRVAAQLLGIRAFGLAALLEQ--FFG 129

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K+++  +      +  T                    +Y   D      +  RL     
Sbjct: 130 IKLDKKHQRADWSMRPLT----------------ADMLDYAAHDTRHLLGLRDRLHDELV 173

Query: 181 KEQELWY 187
           ++    +
Sbjct: 174 QKGRWSW 180


>gi|326521328|dbj|BAJ96867.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 906

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 55/205 (26%), Gaps = 23/205 (11%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L+E  ++     V H +  +   L+  F + +       T   +R   +         
Sbjct: 329 ENLREVFQDPTKKKVMHGAGRDIIWLQRDFGIYV--CNLFDTGQASRILQMDRN------ 380

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                       + L+  FC    ++     +            +Y + D      I+  
Sbjct: 381 ----------SLEHLLQYFCGVTANKEYQSADWRLRPLP-DEMTKYAREDTHYLLYIYDL 429

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           +      E     L   +  R   + + L                 +   L+   ++   
Sbjct: 430 MRLRLVNESSGDDLLLEVCKRSNEICLQLYEKELLTDSSYLYIHGLKENDLSARQLAVLA 489

Query: 235 CLEKLKTWL----FLETGLHLEDLT 255
            L + +  +       TG  L + T
Sbjct: 490 GLYQWRDGVARAEDESTGYILPNKT 514


>gi|301774745|ref|XP_002922791.1| PREDICTED: exosome component 10-like isoform 1 [Ailuropoda
           melanoleuca]
          Length = 885

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 335 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSEMYILNESLTDPSIVKVFHGA 391

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 392 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADW-- 447

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-QELWYLDQ 190
                        R  P           Y + D      I+ ++     +   E     Q
Sbjct: 448 -----------RIRPLP------EEMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQLQ 490

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
               R   + +          +       ++   L
Sbjct: 491 VAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHL 525


>gi|258566335|ref|XP_002583912.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907613|gb|EEP82014.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 635

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 43/181 (23%), Gaps = 35/181 (19%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + ID E   T S   L             V L      D    +   +      Q+L 
Sbjct: 247 KEIGIDLEHHDTHSYYGL-------------VCLMQISTRDKDWIVDTLLPWREELQILN 293

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E   N  +  V H S  +   L+      + +     T   A +   P       ++LK 
Sbjct: 294 EVFANPQIVKVLHGSSMDVIWLQRDLG--LYLVGLFDTYHAAAALHYPK------KSLKF 345

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K    +                               +Y + D      I+  L   
Sbjct: 346 LLDKFVNFQAEKKYQIADWRVRP-----------LLPGMFDYARSDTHYLLYIYDHLRNE 394

Query: 179 S 179
            
Sbjct: 395 L 395


>gi|115896423|ref|XP_795972.2| PREDICTED: similar to G protein-coupled receptor
           [Strongylocentrotus purpuratus]
 gi|115925241|ref|XP_001183731.1| PREDICTED: similar to G protein-coupled receptor
           [Strongylocentrotus purpuratus]
          Length = 976

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 42/198 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKE 59
            + +D E          G+    E   + L      D    L+D   +P + +    LK+
Sbjct: 734 VIGLDCE----------GVELGREKGRLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKK 783

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS----NGLPS----ALKA 111
            LE+  +  V H    +   L    +  + +     T +   +               KA
Sbjct: 784 TLEHDSILKVIHACNSDTYSL--YHDFGVKLKNVFDTSIAMFTIMEQLNRNHPYQIGYKA 841

Query: 112 VGEALK-LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           + E L   +S K ++ K+ +                             Y   D   T  
Sbjct: 842 LCELLGEAASHKDDDFKKKMIETEDFWKIRP-----------LTEEMIYYAASD---TLC 887

Query: 171 I----FKRLEPLSSKEQE 184
           +    + +L  + ++   
Sbjct: 888 LVPTVYLKLNGMLTRVWR 905


>gi|222148187|ref|YP_002549144.1| ribonuclease D [Agrobacterium vitis S4]
 gi|221735175|gb|ACM36138.1| ribonuclease D [Agrobacterium vitis S4]
          Length = 384

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 45/166 (27%), Gaps = 23/166 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E           + +      + L      D  V +        +     + + N
Sbjct: 21  ITIDTE----------FLRETTFWPELCLIQMASPDLEVIVDPLAEGLDL-APFFKLMAN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            DV  V H +  +  ++      ++  H    T V A   G   +      +     QK+
Sbjct: 70  GDVIKVFHAARQDIEII-FHLG-NLIPHPIFDTQVAAMVCGFGDS-----VSYDQLVQKI 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           +          K         R     +  + L       DV +T 
Sbjct: 123 KNIH-----IDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLTL 163


>gi|229472291|gb|ACQ72660.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 60/274 (21%), Gaps = 97/274 (35%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRKLFKASPGQIMVGADLSGIELRMLAHYL-------ARYDEGRYASILLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L+                     
Sbjct: 63  ADKIGISRRQVKTVTYAFLYGAGDAKL---GKSYDAQLSESQAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L   +    E            
Sbjct: 104 -------------------KKGKEIRQAYMDAVPGLEKLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GFINLCDGRRCTVDGAH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMM----NATKAGYDIVLTVHDE 631
           +Q  +  +    ++    N  +     +  VHDE
Sbjct: 157 LQGSAGVLAKRWLLINHDNTRELCCSQLAFVHDE 190


>gi|295659299|ref|XP_002790208.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226281913|gb|EEH37479.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 827

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 41/177 (23%), Gaps = 29/177 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E           +  Y     V L      +    +          QVL E   
Sbjct: 249 EIAIDLE--------HHDVHSY--HGLVCLMQISTREQDWIVDTLKPWREELQVLNEVFT 298

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V H S  +   L+    L I       T   + +   P        +LK   +K
Sbjct: 299 DPKILKVLHGSTMDIIWLQRDLGLYI--VGLFDTYHGSVALNYPK------RSLKFLLEK 350

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               K                               +Y + D      I+  +    
Sbjct: 351 FVNFKAEKKYQMADWRLRP-----------LLPGMFDYARSDTHYLLYIYDHIRNSL 396


>gi|332021038|gb|EGI61427.1| Exonuclease 3'-5' domain-containing protein 1 [Acromyrmex
           echinatior]
          Length = 832

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 85/274 (31%), Gaps = 19/274 (6%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            +  D E    I+L   G         + L   G       ++D V  P + Q   L++ 
Sbjct: 417 VVSFDCE---GINLGVRG--------QLTLVQIGTMSGQAYVFDLVTCPGLVQAGGLQKL 465

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+  VT V H+   +   L   FN+ +       T             K V +   ++ 
Sbjct: 466 LEHPHVTKVIHDCRNDSVNLYNQFNITL--TNVFDTQAAHAVLQFQDTGKPVYKVKNVNL 523

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVT-VTREIFKRLEPL 178
             + +         K +         +   R    R    Y   DV  +  +++  +  L
Sbjct: 524 NTLCDHYNAPCNPLKEQLKNIYRKDQRYWSRRPITREMLIYASSDVLSLVPQVYNAMSRL 583

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQI--VDVERTKLDQELESLTYGLVSSSRCL 236
              EQE  + +         +  A+     +   +  E + L + +E  T   +  S   
Sbjct: 584 IKPEQESLFAELCEEQIQMHIRPAIVKARKKQRKIATELSDLKKRMEEATSKNIVLSNRE 643

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
            +L  +L L      +        R L   + + 
Sbjct: 644 IRLLRYLDLTEDEKEKLKGSYKVARKLEKLENMG 677


>gi|269215504|ref|ZP_06159358.1| ribonuclease D [Slackia exigua ATCC 700122]
 gi|269130991|gb|EEZ62066.1| ribonuclease D [Slackia exigua ATCC 700122]
          Length = 399

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 66/234 (28%), Gaps = 36/234 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-HDPVMPQVLKEA 60
             + ID E           + +      + L   G D+  V +     HD      L++ 
Sbjct: 22  DVVAIDTE----------FLRERCYWAKLCLIQLGTDERSVVVDPLKVHD---LSPLRDL 68

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + +T V  V H +  +  +L     LD+       T V A   G    +      L    
Sbjct: 69  MVDTSVVKVFHAATQDLDIL--FHELDVMPDPIFDTQVAAALLGQTVQVGYGTLVLN--- 123

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                  E   R  K ++      R   + +        Y   DV     I+++L     
Sbjct: 124 -------ECGVRLKKADSFTDWARRPLSSSQI------NYALEDVVYLPRIYRQLTERLE 170

Query: 181 KEQELWYLDQTIND----RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                 +L+    +      Y VD        + V+    +     + +     
Sbjct: 171 ALGRASWLEHDFAELVDPSRYRVDPENRWRHLKNVNQLSGRQLACAKHVAAWRE 224


>gi|242011128|ref|XP_002426307.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510384|gb|EEB13569.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 737

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 47/178 (26%), Gaps = 30/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E             +  +    +L      D    + D +      + L +  
Sbjct: 270 KEIAIDLE---------HHSYRSFQGFTCLL-QISTRDTD-YVIDTIALRSKLEGLNKIF 318

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N ++  V H +  +   L+   +L + +     T    +         ++  A      
Sbjct: 319 TNPNIVKVFHGADLDILWLQR--DLSLYVVNMFDTHQAGKLLNYS----SLSLAY----- 367

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  L+  FCK    +     +             Y + D      I+  L  + 
Sbjct: 368 -------LMFHFCKIVAQKHFQMADWRIRPLP-DELLAYAREDTHYLLYIYDNLRNIL 417


>gi|319404918|emb|CBI78518.1| DNA polymerase III epsilon chain [Bartonella sp. AR 15-3]
          Length = 235

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 67/235 (28%), Gaps = 33/235 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------AFGFDDHPVEL 44
           M  +  D ET            +  E  C+ +                      D  + +
Sbjct: 1   MREIIFDTETTGLN----KESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVIAI 56

Query: 45  WDCVH----DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIPI----HRWI 94
               +    D    + + +AL +   + TIVAHN+ F+   L A               I
Sbjct: 57  HGLTNEHLKDEKNFEDIVDALLDFIDNATIVAHNANFDIGFLNAELGRVNKPLVSSDNVI 116

Query: 95  CTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNHR 151
            TL +AR      P++L  + +   + +  ++  G  L A        E +  +      
Sbjct: 117 DTLSIARRRFPMGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELIGGKQGIFSF 176

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
           + +  F      D        K       +       +   N      D AL + 
Sbjct: 177 DNYENFDVMNVQDSKNVFYTVKMRSQALPQRLSKQEKNMHANLIKKIGDKALWNR 231


>gi|301774747|ref|XP_002922792.1| PREDICTED: exosome component 10-like isoform 2 [Ailuropoda
           melanoleuca]
          Length = 887

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSEMYILNESLTDPSIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-QELWYLDQ 190
                        R  P           Y + D      I+ ++     +   E     Q
Sbjct: 425 -----------RIRPLP------EEMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQLQ 467

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
               R   + +          +       ++   L
Sbjct: 468 VAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHL 502


>gi|170746940|ref|YP_001753200.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831]
 gi|170653462|gb|ACB22517.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831]
          Length = 395

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 48/165 (29%), Gaps = 18/165 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D    L D +   +        + +     V H++  +  ++       
Sbjct: 37  PKLCLIQMAAPDGTAVLVDPLAPGIDLDPFIALMADERTVKVFHSARQDLEII--WLIGG 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           I  H +  T V A   G   +                  ++L+    K +  +     + 
Sbjct: 95  ILPHPFFDTQVAAMVCGYGDS---------------VSYEQLVNDVAKAKIDKSSRFTDW 139

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                +      Y   DVT   +I++ L     +     +LD+ +
Sbjct: 140 SRRPLSEAQLT-YALSDVTHLVKIYEVLVAELLRTDRGAWLDEEM 183


>gi|259416057|ref|ZP_05739977.1| ribonuclease D [Silicibacter sp. TrichCH4B]
 gi|259347496|gb|EEW59273.1| ribonuclease D [Silicibacter sp. TrichCH4B]
          Length = 385

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 54/194 (27%), Gaps = 41/194 (21%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMP 54
            + +D E     T                   + L    F         L D +   +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQIAFRGDGKTDAVLVDPLSSDLSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L E   N DV  V H +  +  +     +  +       T V A   G        GE
Sbjct: 67  EPLYELFRNEDVVKVFHAARQDLEIF--WVDASVFPKPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ + CK    +     +      +      Y   DVT  R+I++ 
Sbjct: 118 QVGY--------ETLVRKICKQGLDKTSRFTDWSRRPLSDAQ-KTYALADVTHLRQIYEH 168

Query: 175 LEPLSSKEQELWYL 188
           L     K     ++
Sbjct: 169 LRKELDKTGRSHWV 182


>gi|296815198|ref|XP_002847936.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
           113480]
 gi|238840961|gb|EEQ30623.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
           113480]
          Length = 810

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 49/195 (25%), Gaps = 33/195 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y     V L      +    +          QVL E  
Sbjct: 266 KEIAVDLE--------HHDAHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVF 315

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLS 119
            +  +  V H S  +   L+      + +     T   A    LP  +LK + +      
Sbjct: 316 ADPSIVKVLHGSSMDVIWLQRDLG--LYLVGLFDTFHAASMLQLPKKSLKFLLQQYVGFD 373

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +   R                          +Y + D      IF RL    
Sbjct: 374 ADKQYQTADWRIRPLLPG-------------------MLDYARSDTHFLLYIFDRLRNEL 414

Query: 180 SKEQELWYLDQTIND 194
            +      ++  +  
Sbjct: 415 IEASGRDAIEYVLER 429


>gi|262038498|ref|ZP_06011867.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
 gi|261747367|gb|EEY34837.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264]
          Length = 54

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 624 IVLTVHDEIVCETPDTDEFN-ASMLYHLMTSNPSWAKGLPLKAEGYESKRYR 674
           ++L VHDE++ E  D         +  +M +  ++ + + L A G  +K + 
Sbjct: 1   MLLQVHDELIFEVKDDAIEKYTDKIKEIMENTVNF-EDIKLSANGSVAKDWG 51


>gi|157129284|ref|XP_001655349.1| hypothetical protein AaeL_AAEL002475 [Aedes aegypti]
 gi|108882084|gb|EAT46309.1| conserved hypothetical protein [Aedes aegypti]
          Length = 939

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 60/215 (27%), Gaps = 21/215 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEA 60
            +  D E    I+L   G         + +   G       ++D    P M     +KE 
Sbjct: 480 VVSFDCE---GINLGVRG--------QITMIQLGTTRGEAFIFDVASCPDMVPHGGIKEV 528

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+  V  V H+   +   L   F + +       T             K V +   +S 
Sbjct: 529 LESEKVIKVIHDCRNDSVNLFNQFQILLK--NVFDTQSAHAVLQFQDQGKQVYKVKNVSL 586

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLS 179
             + E         K +         K   R    R    Y  GDV +       L   +
Sbjct: 587 NTLCEMYNATVNPMKDQLKNVYRRDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNMAT 646

Query: 180 SKEQELWYLDQTIN-----DRGYCVDVALAHTLNQ 209
           S + E   L   +           VDV +     +
Sbjct: 647 SIKAEFRELLAELCTEQILMLIRPVDVKMRKKQRK 681


>gi|315497170|ref|YP_004085974.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48]
 gi|315415182|gb|ADU11823.1| 3'-5' exonuclease [Asticcacaulis excentricus CB 48]
          Length = 206

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 48/180 (26%), Gaps = 33/180 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+    +D  + +      D    +            LK  L 
Sbjct: 19  VVAIDSET--------MGLRFGRDD--LCVVQLSAGDGDAHVVRLNRPAYDCPNLKALLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           +  V  + H   F+  +      +        CT + ++          LK +   L   
Sbjct: 69  DEKVLKLFHFGRFDIGMFLLHLGVVTAP--VYCTKIASKLARTYTDRHGLKDLVREL--- 123

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +       +     + A      Y   DV     + ++L+ + 
Sbjct: 124 ---------LSVDISKAQQSSDWGAQTLTPEQLA------YAASDVLHLHTLREKLDTML 168


>gi|229472607|gb|ACQ72818.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 58/275 (21%), Gaps = 99/275 (36%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRRLFKASPGQIMVGADLSGIELRMLAHYL-------ARYDEGRYADVLLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L+                     
Sbjct: 63  ADKIGISRRQVKTVTYAFLYGAGDAKL---GKSYDAQLSESQAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L   +    E            
Sbjct: 104 -------------------KKGKEIRQAYMDAVPGLEKLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GFINLCDGRRCSVDGAH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMMNATKAGYD-----IVLTVHDE 631
           +Q  +  +    ++              +  +HDE
Sbjct: 157 LQGSAGVLAKRWLL-INHNNTRELCCSQLAFIHDE 190


>gi|229472431|gb|ACQ72730.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 60/274 (21%), Gaps = 97/274 (35%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRRLFKASPGQIMVGADLSGIELRMLAHYL-------ARYDEGRYASILLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L+                     
Sbjct: 63  ADKIGISRRQVKTVTYAFLYGAGDAKL---GKSYDAQLSESQAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L   +    E            
Sbjct: 104 -------------------KKGKEIRQAYMDAVPGLEKLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GFINLCDGRRCTVDGAH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMM----NATKAGYDIVLTVHDE 631
           +Q  +  +    ++    N  +     +  VHDE
Sbjct: 157 LQGSAGVLAKRWLLINHDNTRELCCSQLAFVHDE 190


>gi|307154950|ref|YP_003890334.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
 gi|306985178|gb|ADN17059.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822]
          Length = 305

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 80/303 (26%), Gaps = 45/303 (14%)

Query: 2   ATLFIDFE----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
             L++D E          L+   +  Y +D          D     + D ++        
Sbjct: 21  KILWLDTEVADFKSQKPRLSLIQMLAYPQDK---------DGSRTFIIDVLNKRDEVDYF 71

Query: 58  KE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            E  + N  +  V HN+  +   L              CT+ LA+S      L      L
Sbjct: 72  IEKIMSNEQINKVFHNAQHDLKFL-----GGKKAQNITCTMKLAQSI-PYHILPVSSLTL 125

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR-- 174
           K  ++ + E K       K E       R              Y K D      I ++  
Sbjct: 126 KTLTEHLTEFKN----VSKEEQGSDWGQRPLS------DQQLHYAKMDPIYLAHIHQKLL 175

Query: 175 -------LEPLSSKEQELWYLDQTINDRGYCVDVA--LAHTLNQIVDVERTKLDQELESL 225
                   +P      E+    Q I      +D          +     + K +     L
Sbjct: 176 ELIKKNNTDPTRDDLTEIGKRYQEIEPEWKILDSEINHLKERAKNAMKAQNKPENFAFKL 235

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMR 282
           +    ++ +        L +  GL       L ++  Q+ L           +       
Sbjct: 236 SGSDRTTVKVDFAELAQLAVSQGLDLHFPITLDKS-LQKQLGDLLNKLSIQEEKTTTWRL 294

Query: 283 ASR 285
            S+
Sbjct: 295 LSK 297


>gi|239918065|ref|YP_002957623.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
 gi|281415754|ref|ZP_06247496.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
 gi|239839272|gb|ACS31069.1| DNA polymerase I family protein with 3'-5'-exonuclease and
           polymerase domains [Micrococcus luteus NCTC 2665]
          Length = 578

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 61/479 (12%), Positives = 109/479 (22%), Gaps = 123/479 (25%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVD----------VERTKLDQELESLTYGLVSSSRCL 236
            +   I   G   D  +   L                    L + +  +      S    
Sbjct: 177 LVAAEIRAAGLPWDRGVHEALLAEQLGPRPAPGERPARLQALAERIADVLGSPGLSPDSQ 236

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSS---NKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             L   L    G+ +E   +   +  + +    ++     +         +R        
Sbjct: 237 PSLLRAL-QTAGVAVESTRQWDLKHWIDAGGAEREARAALLAPLLEYKALARLWTANGWH 295

Query: 294 LVEA-MNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITS 352
            ++  +  DGR       +G   TGRW+        +P                      
Sbjct: 296 WLDQWIGDDGRFHAAY-LVGGVVTGRWAAHGGGAMQVP---------------------- 332

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDL-YVT 411
                      VR  V A  G  L VAD + +E R+LA MA ++   +A  T +    V 
Sbjct: 333 ---------AGVRDAVRADPGWTLTVADASQVEPRILAAMAADEVLARAGTTPDLYREVA 383

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              R+   A A          K+  L   Y         +                    
Sbjct: 384 EQGRAAGTALADRG-----RAKIALLGAMYGSTTGDSAAL----------------MPHL 422

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
              +  A                   ++G       + W++  S V              
Sbjct: 423 RRLYPRAIGLLERAATVGEGGGQVSTWLGRWSPAPGRKWQESVSDV--------GTQAAE 474

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
               +   ++ R     V         +  +   R             L +   +     
Sbjct: 475 SAARRRRRSQGRFTRNFVVQGTAAEWALCWMGEIRRR-----------LRSAGMRTE--- 520

Query: 592 TYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                                           +V  VHDE+V   P T+      +   
Sbjct: 521 --------------------------------LVFFVHDEVVLHGPTTEAEAVRTVVAE 547


>gi|114704849|ref|ZP_01437757.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
 gi|114539634|gb|EAU42754.1| probable ribonuclease d protein [Fulvimarina pelagi HTCC2506]
          Length = 383

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 70/249 (28%), Gaps = 28/249 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L     DD  V +        +       + +  V  V H +  +  ++       
Sbjct: 37  PELCLIQMASDDTEVLVDPLAKGLSL-DPFFALMADESVVKVFHAARQDLEIVYK-LGAV 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           IP      T + A   G   +                   +L+AR   G   +     + 
Sbjct: 95  IP-KPLFDTQIAAMVCGFGES---------------IAYDQLVARLTDGRIDKSSRFTDW 138

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
            +   + +    Y   DVT  R+++K L+    +     +LD    +     D       
Sbjct: 139 RHRPLSDKQLT-YALADVTHLRDVYKALKAQLEETSRHSWLD---EEMAILADPQTYDLH 194

Query: 208 NQIVDVERTKLDQE------LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                       ++      L+ +       +R  ++ +  +  +  ++     +   + 
Sbjct: 195 PDDAWRRMKMRVKKPIELQILKEVAAWREREARSNDRPRGRILKDDAIYEIAQQKPASEA 254

Query: 262 VLSSNKKLT 270
            L   + L 
Sbjct: 255 DLGRLRSLP 263


>gi|294675627|ref|YP_003576242.1| DNA polymerase III subunit epsilon [Rhodobacter capsulatus SB 1003]
 gi|294474447|gb|ADE83835.1| DNA polymerase III, epsilon subunit [Rhodobacter capsulatus SB
           1003]
          Length = 231

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 33/149 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET            +  E   V L                       AF   
Sbjct: 1   MREIVLDTETTGFEPSEG---HRIVEIGAVELMNHVPTGRTYHQYINPERAMPQEAFAVH 57

Query: 39  D-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRW 93
                 L D      + Q   + + +    ++ HN+ F+   L A         +P+ R 
Sbjct: 58  GLGDDFLRDKPKFGAIAQDFLDFIGDDSKLVI-HNAAFDMKFLNAELGWVQKPLLPMDRA 116

Query: 94  ICTLVLARSN--GLPSALKAVGEALKLSS 120
           + TL +AR    G P+ L A+     + +
Sbjct: 117 LDTLAMARRKFPGSPATLDALCRRFGIDN 145


>gi|304321318|ref|YP_003854961.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
 gi|303300220|gb|ADM09819.1| ribonuclease D [Parvularcula bermudensis HTCC2503]
          Length = 383

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 65/244 (26%), Gaps = 24/244 (9%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L           + D +   +      E L +  V  V H +  +  +        
Sbjct: 37  PKLCLIQVA-STEEAAIIDPLAAALDLAPFLELLADPSVLKVFHAARQDLEIFYKLMGKV 95

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                   T + A +                  Q   E   LI      +  +     + 
Sbjct: 96  --PAPLFDTQIAAMAC-------------GHGDQVGYE--ALIREVTGAQVDKGSRFTDW 138

Query: 148 PNHREAWRLFGEYCKGD----VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
                + +    Y  GD    V   + +   LE     E     + Q  +   Y  D   
Sbjct: 139 AKRPLSDKQLT-YALGDVTHLVDAYQALITELEEKGRLEWIHAEMTQLNDPTLYYTDPDE 197

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
           A    + V   + +    L+++       +   +  +  +  + GL     T+    + L
Sbjct: 198 AWRRIK-VRNLKQRDRALLKAVAAWREREAIARDTPRNRVMKDDGLMEIVRTKPKDAQEL 256

Query: 264 SSNK 267
           ++ +
Sbjct: 257 AALR 260


>gi|262212409|gb|ACY35821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 59/274 (21%), Gaps = 97/274 (35%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRRLFKASPGQIMVGADLSGIELRMLAHYL-------ARYDEGRYADVLLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L                      
Sbjct: 63  ADKIGISRRAVKTVTYAFLYGAGDAKL---GKSYDAQLTESQ------------------ 101

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L   +    E            
Sbjct: 102 -----------------TKKKGKEIRQAYMDAVPGLEKLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GFINLCGGRRCSVDGAH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMM----NATKAGYDIVLTVHDE 631
           +Q  +  +    ++    N  +     +  +HDE
Sbjct: 157 IQGSAGVLAKRWLLINHDNTRELCCSQLAFIHDE 190


>gi|229472211|gb|ACQ72620.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 57/275 (20%), Gaps = 99/275 (36%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRKLFKASPGQIMVGADLSGIELRMLAHYL-------ARYDEGRYASILLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L                      
Sbjct: 63  ADKIGISRRQVKTVTYAFLYGAGDAKL---GKSYDAQLTESQAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L   +    E            
Sbjct: 104 -------------------KKGKEIRQAYMDAVPGLEKLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GFINLCDGRRCSVDGAH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMMNATKAGYD-----IVLTVHDE 631
           +Q  +  +    ++              +  +HDE
Sbjct: 157 LQGSAGVLAKRWLL-INHNNTRELCCSQLAFIHDE 190


>gi|229472441|gb|ACQ72735.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 59/276 (21%), Gaps = 99/276 (35%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    A+ G  +V ADLAGIE R+LA          A                +   
Sbjct: 10  AEFRQLFTATPGLVMVGADLAGIELRMLAHYL-------ARYDEGRYADILLNGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L                      
Sbjct: 63  ADKIGISRRQVKTVTYAFLYGAGDAKL---GRSYDPQLAEKEAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L + +    E            
Sbjct: 104 -------------------RKGKEIRQAYMDAVPGLEKLVSAVKSKAE------------ 132

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 133 ---------------CGYINLCDGRRCSVDGSH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMMNATKAGYDI------VLTVHDE 631
           +Q  +  I    M    ++ Y        +  VHDE
Sbjct: 157 LQGSAGVIAKRWMALTHESIYRSNIEAKQLAFVHDE 192


>gi|229472209|gb|ACQ72619.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472325|gb|ACQ72677.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472333|gb|ACQ72681.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472437|gb|ACQ72733.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 57/275 (20%), Gaps = 99/275 (36%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRKLFKASPGQIMVGADLSGIELRMLAHYL-------ARYDEGRYADVLLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L                      
Sbjct: 63  ADKIGISRRAVKTVTYAFLYGAGDAKL---GKSYDAQLTESQAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L   +    E            
Sbjct: 104 -------------------KKGKEIRQAYMDAVPGLEKLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GFINLCDGRRCSVDGAH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMMNATKAGYD-----IVLTVHDE 631
           +Q  +  +    ++              +  VHDE
Sbjct: 157 LQGSAGVLAKRWLL-INHNNTRELCCSQLAFVHDE 190


>gi|229472467|gb|ACQ72748.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 63/273 (23%), Gaps = 99/273 (36%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R+   AS G  +V ADLAGIE R+LA          A   G            +   A  
Sbjct: 13  RALFTASPGYAMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G K       +    L+                        
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSEKDAT------------------- 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                           T  + +++A+      + +L   +    E               
Sbjct: 104 ----------------TKGKEIRQAYMDAIPGLEKLVTAVKSKAES-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          + L  GR                             K    ++Q 
Sbjct: 134 -------------GYIQLCDGRRCPVDGSH---------------------KALNYLLQG 159

Query: 605 VSRDILAEGM------MNATKAGYDIVLTVHDE 631
            +  +    M      +   +     +  VHDE
Sbjct: 160 CAGCVAKLWMVHTHDVIKLNQIEAYQLAFVHDE 192


>gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC
           15444]
 gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 232

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 53/182 (29%), Gaps = 35/182 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF---------------AFGFDDHPVELWD 46
             +  D ET            +  E   V +                     +  + +  
Sbjct: 6   REIAFDTETTGLNPNEG---DRIIEIGAVEMINHIPTGKTFRRLINPGMAVSEATIRITG 62

Query: 47  CVHDP-------VMPQVLKEALE-NTDVTIVAHNSYFERTVLK----ACFNLDIPIHRWI 94
              D          P ++   LE   D  IVAHN+ F+R  L      C    IP  RW+
Sbjct: 63  ITDDHLRDKPPFEHPDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPEDRWV 122

Query: 95  CTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKPN 149
            T+ +A  R  G P++L A+ +   +S +       L+                 R    
Sbjct: 123 DTVQMARKRYPGAPASLDALCKRFDISLESRTFHGALLDSQLLASVYLELLGGRARAFSF 182

Query: 150 HR 151
             
Sbjct: 183 EP 184


>gi|71657562|ref|XP_817295.1| ribosomal RNA processing protein 6 [Trypanosoma cruzi strain CL
           Brener]
 gi|70882476|gb|EAN95444.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
          Length = 768

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 48/175 (27%), Gaps = 31/175 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y       L         + L DC+       +L    
Sbjct: 288 KEIAVDLE--------HHSFYSY--QGFTCLMQISTRSEDI-LIDCLKLRSSMHLLAPVF 336

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N ++  V H +  +   L+  F   + +  +  T +  ++  +P  L            
Sbjct: 337 LNPNILKVLHGAREDIRWLQKDFG--LYLVNFFDTGIALQTLHMPHGLAFA--------- 385

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                   +  FC+ +  +     +             Y + D      ++ RL+
Sbjct: 386 --------VDHFCQVKLDKKYQTADWRIRPIP-AEMATYARQDTHFLLYVYDRLK 431


>gi|281349256|gb|EFB24840.1| hypothetical protein PANDA_011805 [Ailuropoda melanoleuca]
          Length = 834

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSEMYILNESLTDPSIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCGVESNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-QELWYLDQ 190
                        R  P           Y + D      I+ ++     +   E     Q
Sbjct: 425 -----------RIRPLP------EEMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQLQ 467

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
               R   + +          +       ++   L
Sbjct: 468 VAWQRSRDICLKKFAKPIFTDESYLELYRKQKRHL 502


>gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 677

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 32/144 (22%)

Query: 4   LFIDFETRSPID-----LTKCGICKYAEDVCVI-LFAFG--FDDHPVE------------ 43
           +  D ET          + + G  +   +  ++   +F    +   V             
Sbjct: 485 IVFDTETTGLQPSQGDQIVQIGAVRIV-NGRILSGESFNRIVNPGRVIPPESIKFHGITD 543

Query: 44  --LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
             + D     V+    K    +    +VAHN+ F+   L+     F L    +  + T++
Sbjct: 544 DMVKDKPPLGVVLPQFKAFAADA--VLVAHNAAFDLKFLRMNERQFGLKFD-NPVLDTMM 600

Query: 99  LARSNGLP---SALKAVGEALKLS 119
           L+     P    +L A+ + L +S
Sbjct: 601 LSNYLDGPETGHSLDAICDRLGIS 624


>gi|110677834|ref|YP_680841.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
 gi|109453950|gb|ABG30155.1| DNA polymerase III, epsilon subunit [Roseobacter denitrificans OCh
           114]
          Length = 228

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 33/178 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
           M  + +D ET            +  E   V L                 +  MP+     
Sbjct: 1   MREIVLDTETTGFDP---ESGDRIVEIGAVELMGH-VATGRTYHQYINPERSMPEEAFQV 56

Query: 59  -----EALENT---------------DVTIVAHNSYFERTVLKACFN-LDIPIHRW---I 94
                + L +                D  +V HN+ F+   L A    +++P   W   I
Sbjct: 57  HGLGDDFLRDKPKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELGWINLPKIPWEQAI 116

Query: 95  CTLVLA--RSNGLPSALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPN 149
            TL +A  R  G P++L A+     + +      G  L +        E +  R    
Sbjct: 117 DTLDIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELIGGRQPDF 174


>gi|229472603|gb|ACQ72816.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 60/274 (21%), Gaps = 97/274 (35%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRRLFKASPGQIMVGADLSGIELRMLAHYL-------ARYDEGRYADVLLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L+                     
Sbjct: 63  ADKIGISRRQVKTVTYAFLYGAGDAKL---GKSYDAQLSEQQAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L   +    E            
Sbjct: 104 -------------------KRGKEIRQAYMDAVPGLEKLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GYINLCDGRRCSVDGSH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMM----NATKAGYDIVLTVHDE 631
           +Q  +  +    ++    N  +     +  VHDE
Sbjct: 157 LQGSAGILAKRWLLINYENTRELCCSQLAFVHDE 190


>gi|226323296|ref|ZP_03798814.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
 gi|225208486|gb|EEG90840.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758]
          Length = 162

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 42/167 (25%)

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV--TKDQRAIGKVMELALGYQ 442
           + RV+A +A E W+ + F+ G D+Y T+ ++ F+V   +       R  GK+ +LALGY 
Sbjct: 33  DNRVIAHLARESWRAEVFKNGGDIYCTSASQMFHVPVEKHGINGHLRQKGKIADLALGYG 92

Query: 443 GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
           G   A + M                                         A+E       
Sbjct: 93  GSVGALKAMG----------------------------------------ALEMGLTEDE 112

Query: 503 CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLV 549
            + +  AWRQ +  +  LW +   A +  I+   +  +        +
Sbjct: 113 LQPLVDAWRQSNPNIVALWWDFDTAIKNAIKMHCSTASHSLNYCSNL 159


>gi|94497624|ref|ZP_01304192.1| ribonuclease D [Sphingomonas sp. SKA58]
 gi|94422841|gb|EAT07874.1| ribonuclease D [Sphingomonas sp. SKA58]
          Length = 412

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 79/292 (27%), Gaps = 49/292 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL- 61
            + +D E              Y  D  + L     D H     D     +    L   L 
Sbjct: 49  YVAVDTE--------FMRENSYWPD--LCLVQVA-DSHEAAAIDPKAPGIDLTPLLNLLV 97

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           +N DV  V H    +  ++          H    T + A + G        GE +   + 
Sbjct: 98  DNEDVLKVFHAGGQDIEIVHNLTGK--APHPMFDTQIAAMALGF-------GEQIGYGNL 148

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L  +  KG        R     +        Y  GDVT   +IF ++     K
Sbjct: 149 VDAW---LGVQLDKGARFTDWARRPLDKRQID------YAIGDVTYLIKIFPKMLEELKK 199

Query: 182 EQELWYLDQTINDRGYCV----DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                +LDQ +           D A A    + +   +  +   L++L       +    
Sbjct: 200 TGRGDWLDQEMERISNPSNYENDPADAWKRVR-IASRKADVLGRLKALAAWREMEA---- 254

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
                   +  L    + +      L+      P+A +        S +   
Sbjct: 255 -------QDKNLPRGRIVKD---ETLADIASHPPRAQEDLGKVRGLSATWKT 296


>gi|328955332|ref|YP_004372665.1| ribonuclease D [Coriobacterium glomerans PW2]
 gi|328455656|gb|AEB06850.1| ribonuclease D [Coriobacterium glomerans PW2]
          Length = 377

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 64/270 (23%), Gaps = 45/270 (16%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + ID E     T                   + L      +    +     +      L
Sbjct: 21  IVAIDTEFLRERTY---------------HPRLCLVQVATPEVSALVDPLEIED--LSPL 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              + +     + H    +  VL      D+  +    T V A   G    +   G    
Sbjct: 64  AALMADEGTRKIFHACSQDMEVLLNAL--DVLPNPIFDTQVAAAFLGERVQMSYDG---- 117

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                      L+  FC     +     +  +         +Y + DV      ++ +  
Sbjct: 118 -----------LVKAFCGVSLPKTASLTDWSHRPLTAEQM-DYAEDDVRYLICAYEVMAE 165

Query: 178 LSSKEQELWYLDQTINDRG----YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              +   + +    +        Y  D  LA+   + +     +       L       +
Sbjct: 166 RLEQRGRMSWALDEMRPLADESHYRHDRRLAYKRVKRIGSCTRRQLGVARELAAWREGRA 225

Query: 234 RCLEK-LKTWLFLETGLHLEDLTETTCQRV 262
              +   K  +  E  L L      +   +
Sbjct: 226 ESHDIPRKWIMSDEVLLALAKRAPHSVAEL 255


>gi|169617554|ref|XP_001802191.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
 gi|111059251|gb|EAT80371.1| hypothetical protein SNOG_11959 [Phaeosphaeria nodorum SN15]
          Length = 805

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 43/179 (24%), Gaps = 31/179 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y     V L      D    +          + L E  
Sbjct: 252 KEIAVDLE--------HHDNRSYIGM--VSLMQISTRDKDWIVDTLKPWRRKLECLNEVF 301

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSS 120
            + ++  V H +Y +   L+    L I       T   ARS G    +L  + E      
Sbjct: 302 ADPNILKVLHGAYMDIMWLQRDLGLYI--VGLFDTHHAARSLGYPGGSLAYLLERH---- 355

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               + K              L                EY + D      IF  +    
Sbjct: 356 ---VQFKAQKQYQLADWRIRPLGKELF-----------EYARADTHFLLYIFDNMRNEL 400


>gi|295689658|ref|YP_003593351.1| ribonuclease D [Caulobacter segnis ATCC 21756]
 gi|295431561|gb|ADG10733.1| ribonuclease D [Caulobacter segnis ATCC 21756]
          Length = 389

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/274 (10%), Positives = 70/274 (25%), Gaps = 47/274 (17%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L       H   + D + D +  + L 
Sbjct: 23  VAVDTEFMRETTYW---------------PKLCLIQVASPTHEA-VIDPLADDIDLEPLL 66

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             + +  +  V H +  +  +      L         T V             +      
Sbjct: 67  AVMRDERILKVFHAARQDVEIFNN---LKAMPKPLFDTQVA-----------GMAAGFGE 112

Query: 119 SSQKMEEGKELIA-RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                   ++++     K         R     +        Y   DVT    +F  L  
Sbjct: 113 QIAYDALVRQMLRIELDKSSRFTDWARRPLTEAQ------LTYALADVTHLAALFPILRE 166

Query: 178 LSSKEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                  L ++++ +          VD   A    +     + K     +++      ++
Sbjct: 167 RLETSGRLAWVEEEMTAISDPAAYDVDPEKAWRRLRP-RKTQAKYLAVFKAVAAWRERTA 225

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
           +  ++ +  +  +  +        T    L++ +
Sbjct: 226 QNRDQPRGRILKDEAIDELATQAPTSLEALNNLR 259


>gi|260433597|ref|ZP_05787568.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417425|gb|EEX10684.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
          Length = 424

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 41/199 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMP 54
            + +D E     T                   + L        D+    L D + D +  
Sbjct: 61  YVTVDTEFLRERTYYS---------------KLCLIQMAVPSEDEDSAVLVDPLADGLSL 105

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L E  +N DV  V H +  +  +      +         T V A   G        GE
Sbjct: 106 DPLYELFQNEDVVKVFHAARQDLEIFWVEAGIFPKP--LFDTQVAAMVCGF-------GE 156

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ + CK    +     +      +      Y   DVT  R+I++ 
Sbjct: 157 QVGY--------ETLVRKICKQGLDKTSRFTDWSRRPLSDAQ-KTYALADVTHLRQIYEY 207

Query: 175 LEPLSSKEQELWYLDQTIN 193
           L     K     ++ + + 
Sbjct: 208 LAAELEKTGRSRWVAEELR 226


>gi|89054329|ref|YP_509780.1| ribonuclease D [Jannaschia sp. CCS1]
 gi|88863878|gb|ABD54755.1| ribonuclease D [Jannaschia sp. CCS1]
          Length = 386

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 62/247 (25%), Gaps = 35/247 (14%)

Query: 28  VCVILFAFG---FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
             + L        DD    L D + + +  + L E   N +V  V H +  +  +     
Sbjct: 38  AQLCLVQVAMPGTDDTDAVLIDPLAEGLSLEPLYELFRNVNVVKVFHAARQDLEIF--FV 95

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
              +       T V A   G       VG             + L+ R  K    +    
Sbjct: 96  EGGLVPTPLFDTQVAAMVCGFG---DQVG------------YETLVRRIAKANLDKSSRF 140

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----SKEQELWYLDQTINDRGYCVD 200
            +      +      Y   DVT  REI++ L                L Q  N   Y VD
Sbjct: 141 TDWSRRPLSDAQ-KVYALADVTYLREIYEYLSAELARTDRTHWLEEELAQLTNADAYVVD 199

Query: 201 VALAHTLNQIVDVE-----RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
              A    ++           +             +  R        L     L L    
Sbjct: 200 PENAWKRLKLRSNSGRVVAIAQQLAAFRETYAQEKNVPRNRVLKDDAL-----LELAGTK 254

Query: 256 ETTCQRV 262
             T   +
Sbjct: 255 PKTVADL 261


>gi|170112858|ref|XP_001887630.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164637532|gb|EDR01817.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 854

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 48/170 (28%), Gaps = 22/170 (12%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69
           T   +DL       Y     + L      ++   + D +      + L E   +  +  V
Sbjct: 262 TEIAVDLEHHSYRSYT--GFLCLMQISDREND-WIVDLLALRDEIEQLNEIFTDPKIVKV 318

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            H +  +   L+  FN+ I       T   ++    P     +   L++    + +    
Sbjct: 319 LHGAESDVVWLQQDFNVYI--VNLFDTFHASKLLDFPR--HGLANLLEMYCDYIPD---- 370

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                K         R  P      +   +Y + D      I+  L    
Sbjct: 371 -----KRYQLADWRIRPLP------QEMLDYARSDTHFLLFIYDNLRNAL 409


>gi|296444995|ref|ZP_06886956.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
           OB3b]
 gi|296257416|gb|EFH04482.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
           OB3b]
          Length = 242

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 56/197 (28%), Gaps = 44/197 (22%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYA---------------------EDVCVILFA 34
           M  +  D ET          + + G  + +                     E   V   +
Sbjct: 1   MREIVFDTETTGLDPAKGHRIVEIGAVEISNLIPTGRTFHFYLDPERDMPEEAFRVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPI 90
             F     +         + +   E + +  +  VAHN+ F+       L       I  
Sbjct: 61  TAFLTGQKKF------REIAEAFLEFVADAQL--VAHNAEFDMRFVNAELAMLGLEAIAA 112

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNK 147
            R + TL +AR     +  +L A+ +   +  S++ + G  L +        E +  R  
Sbjct: 113 DRVVDTLTIARRLHPGAANSLDALCQRYGVDSSRRDKHGALLDSYLLAEVYAELMGGRQ- 171

Query: 148 PNHREAWRLFGEYCKGD 164
                  +        D
Sbjct: 172 --SALVLQTSVAAAAQD 186


>gi|312870293|ref|ZP_07730421.1| exonuclease [Lactobacillus oris PB013-T2-3]
 gi|311094177|gb|EFQ52493.1| exonuclease [Lactobacillus oris PB013-T2-3]
          Length = 178

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 31/147 (21%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET      S   L    +   + A++   +      +      W        
Sbjct: 1   MNFIAMDFETASAKRYSACSLALTIVRDNQIADEFYTL-----INPQTPFFWRNVQIHGI 55

Query: 46  ---DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
              D    P  P+V +        +  ++AHN+ F+  VLK     + ++ P ++ + T+
Sbjct: 56  HERDVADAPTFPEVWEHIKGFYTPEKLVIAHNNRFDNGVLKSTLEHYGIEPPAYQTLDTV 115

Query: 98  VLARSNGLPSA---LKAVGEALKLSSQ 121
           V +R      +   L  V +AL +   
Sbjct: 116 VSSRRLLPGLSNYKLNTVCDALNIDLH 142


>gi|297182779|gb|ADI18933.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0010_09O16]
          Length = 203

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 26/203 (12%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           +D  T   +D    G+    +   + L      +    +     +      L + L + +
Sbjct: 16  LDLGTIVAVDGEFLGLNVRRD--RLCLIQVSSGNSDAHIVQLDRENYNAPNLVKILADKN 73

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLV---LARSNGLPSALKAVGEALKLSSQK 122
           +  + H +  + T +K        ++   C+ +   LAR+     +L             
Sbjct: 74  IKKLFHYARSDLTHIKYYL--KTDVNNIECSKIKSKLARTFSDSHSL------------- 118

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               K LI  F           +      E  +   +YC  DV    +I   L+ +  +E
Sbjct: 119 ----KTLIKEFA--NVDVSKQFQTSDFGGELSQGQLKYCANDVIYLHKIHSELDKILERE 172

Query: 183 QELWYLDQTINDRGYCVDVALAH 205
           + +    + I      + + L  
Sbjct: 173 KRMDLYRECIKFLHTRIKLDLLE 195


>gi|159045988|ref|YP_001534782.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913748|gb|ABV95181.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 230

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 32/148 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LW------------- 45
           M  + +D ET            +  E   V LF        V                  
Sbjct: 1   MREIVLDTETTGFEPSEG---DRLVEIGGVELFNH-VPTGRVYHQYINPQRSMPQSAFEV 56

Query: 46  -----DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL----DIPIHRWI 94
                D + D  +   + EA  +   D  +V HN+ F+   L A         +P+ + I
Sbjct: 57  HGLGDDFLADKPLFAEVAEAFLDFIGDAKLVIHNAAFDMKFLNAELGWLGKPLLPMEQAI 116

Query: 95  CTLVLARSN--GLPSALKAVGEALKLSS 120
            TL +AR    G P++L A+     + +
Sbjct: 117 DTLAIARRKFPGSPASLDALCRRFGVDN 144


>gi|254419186|ref|ZP_05032910.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3]
 gi|196185363|gb|EDX80339.1| 3'-5' exonuclease, putative [Brevundimonas sp. BAL3]
          Length = 204

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 49/180 (27%), Gaps = 35/180 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID ET         G+ ++  D   +       D    +            LK  L +
Sbjct: 20  VAIDSET--------MGL-RFRRDPLCV-VQLSAGDGNAHVVRLNRPGYDCPNLKRLLTD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KLS 119
             VT + H   F+  +      ++       CT + ++          LK V      + 
Sbjct: 70  PAVTKIFHFGRFDIGMFLLHLGVETRP--VYCTKIASKLARTYTDRHGLKDVVRETVGVD 127

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K ++  +                       E  +   +Y   DV        +L+ + 
Sbjct: 128 LSKAQQSSDWG-------------------AAELTQAQLDYAASDVLYLHAARAKLDLML 168


>gi|226288046|gb|EEH43559.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 826

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 44/177 (24%), Gaps = 29/177 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E           +  Y     V L      D    +          QVL E   
Sbjct: 249 EIAIDLE--------HHDVHSY--HGLVCLMQISTRDQDWIVDTLKPWREELQVLNEVFT 298

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V H S  +   L+    L I       T   + +   P        +LK   +K
Sbjct: 299 DPKILKVLHGSTMDIIWLQRDLGLYI--VGLFDTYHGSVALNYPK------RSLKFLLEK 350

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               K         E    + D              +Y + D      I+  +    
Sbjct: 351 FVNFKA--------EKIYQMADWRLRP---LLPGMFDYARSDTHYLLYIYDHIRNSL 396


>gi|225679037|gb|EEH17321.1| exosome component 10 [Paracoccidioides brasiliensis Pb03]
          Length = 827

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 44/177 (24%), Gaps = 29/177 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E           +  Y     V L      D    +          QVL E   
Sbjct: 249 EIAIDLE--------HHDVHSY--HGLVCLMQISTRDQDWIVDTLKPWREELQVLNEVFT 298

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V H S  +   L+    L I       T   + +   P        +LK   +K
Sbjct: 299 DPKILKVLHGSTMDIIWLQRDLGLYI--VGLFDTYHGSVALNYPK------RSLKFLLEK 350

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               K         E    + D              +Y + D      I+  +    
Sbjct: 351 FVNFKA--------EKIYQMADWRLRP---LLPGMFDYARSDTHYLLYIYDHIRNSL 396


>gi|73541877|ref|YP_296397.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134]
 gi|72119290|gb|AAZ61553.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 240

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 60/208 (28%), Gaps = 32/208 (15%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y   +  +   A       
Sbjct: 4   MRQIVLDTETTGLNAATGDRLIEIGCVELVNRRLTGRHLHFYVNPERDIDEGAIAVHGIT 63

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI---PIHRWI 94
           VE   D      +   +++ +++ ++ I  HN+ F+   L        L      +   I
Sbjct: 64  VEFLADKPKFAEVVNEVRDFVQDAELII--HNAQFDLGFLDMEFRLLGLPPFREHVGSVI 121

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL+ AR        +L A+ + L +S+        L+      E +  +         +
Sbjct: 122 DTLLEARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLVID 181

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                            ++   + P+  
Sbjct: 182 MLDGAE--AADGSVAESDLSHIVLPVLY 207


>gi|296123324|ref|YP_003631102.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
 gi|296015664|gb|ADG68903.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
          Length = 686

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 41/124 (33%), Gaps = 25/124 (20%)

Query: 558 LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA 617
             +  P GR +   +                R+         N++QA + ++  + ++  
Sbjct: 570 GFVTTPLGRVIDLTE--------GQDDLNRQRQA------VNNLIQAHAAELFKQALIAM 615

Query: 618 TKA---GYDIVLTVHDEIVCETPDTDEFNASM-LYHLM---TSNPSWAKGLPLKAEGYES 670
            +    G  I+L +HD ++ +         +  +   M   ++       +PL+      
Sbjct: 616 DQRLPPGARILLPMHDGVLVDCLTHQLDAVARGIRAAMTGFSNPMP----VPLQVVIETG 671

Query: 671 KRYR 674
           + + 
Sbjct: 672 QNWG 675


>gi|112491261|pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain
 gi|112491264|pdb|2HBK|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain; Protein In Complex With Mn
 gi|112491267|pdb|2HBL|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain; Protein In Complex With Mn, Zn, And Amp
 gi|112491277|pdb|2HBM|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p,
           Reveals An Interplay Between The Active Site And The
           Hrdc Domain; Protein In Complex With Mn, Zn, And Ump
          Length = 410

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 18/151 (11%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEA 60
             + +D E              Y     ++        +    L D +       +L E 
Sbjct: 107 KEIAVDLE-----------HHDYRSYYGIVCLMQISTRERD-YLVDTLKLRENLHILNEV 154

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119
             N  +  V H ++ +   L+      + +     T   +++ GLP  +L  + E    +
Sbjct: 155 FTNPSIVKVFHGAFMDIIWLQRDLG--LYVVGLFDTYHASKAIGLPRHSLAYLLE--NFA 210

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNH 150
           + K  +  +L     +  +           H
Sbjct: 211 NFKTSKKYQLADWRIRPLSKPMTAAARADTH 241


>gi|146281747|ref|YP_001171900.1| ribonuclease D [Pseudomonas stutzeri A1501]
 gi|145569952|gb|ABP79058.1| ribonuclease D [Pseudomonas stutzeri A1501]
          Length = 401

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 72/272 (26%), Gaps = 35/272 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  +     ++      D     L D        P      L+
Sbjct: 54  VAVDTE--------FMRVDTFYPIAGLVQVG---DGRRAYLIDPLAVRDWHP--FATLLD 100

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  V H    +  VL               T + A    +  ++             
Sbjct: 101 DAAVVKVLHACSEDLEVLLRLTGSL--PQPLFDTQLAAGYLNIGFSMG------------ 146

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                 L+      E  +     +      +  +   Y   D     E+++ L P  S +
Sbjct: 147 ---YSRLVQAVLGIELPKGETRSDWLQRPLS-EMQVRYAAEDAQHLAELYEALLPKLSDD 202

Query: 183 QELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           +  W L+             D   A+   +     + +    L+ LT      +R   + 
Sbjct: 203 KRAWVLEDGAELVANLQRESDPEEAYREVKQAWRLKPQQLAVLKVLTAWRERQARARNQP 262

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  E  L     T+      L+   ++ P
Sbjct: 263 RNRVLREASLWPLARTQPCDLVTLARIDEMHP 294


>gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 244

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 34/148 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLK- 58
           M  +  D ET            +  E   V L  +       +++       + P+ LK 
Sbjct: 6   MRKIIFDIETTGLD----KKNDRIIEIGAVELLDYSKTGRTFQVFLSPDGKKVNPEALKL 61

Query: 59  ----------------------EALENTDVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                                 +   + +   +AHN+ F+       L+      +   R
Sbjct: 62  HGITDEFLRDKPFFSAIFPEFWDFFNDKNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 121

Query: 93  WICTLVLARSNGLPSA--LKAVGEALKL 118
            + TL +AR     S   L ++ +   +
Sbjct: 122 IVDTLSIARRKHPSSRNDLNSLCKRYGI 149


>gi|288923665|ref|ZP_06417768.1| hypothetical protein FrEUN1fDRAFT_7466 [Frankia sp. EUN1f]
 gi|288344980|gb|EFC79406.1| hypothetical protein FrEUN1fDRAFT_7466 [Frankia sp. EUN1f]
          Length = 138

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 590 EYTYGGKLTENIVQAVSRDILAEGMMNATK----AGYDIVLTVHDEIVCETP 637
              +G      +VQ  + ++     +   +     G +IVL +HDE++   P
Sbjct: 42  AAAWGRFARNAVVQGSAAELFKAWAVTVRQLLVPLGGEIVLCLHDELLLHVP 93


>gi|194468196|ref|ZP_03074182.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
 gi|194453049|gb|EDX41947.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus reuteri
           100-23]
          Length = 178

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 31/147 (21%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET      S   L    +   + A++   +      + H    W        
Sbjct: 1   MNFIAMDFETANGKRYSACSLALTIVRNGQIADEFYTL-----INPHTKFFWRNTQIHGI 55

Query: 46  ---DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTL 97
              D  + P  P+V +        D  ++AHN+ F+ +VL+     +N+++P ++ + T+
Sbjct: 56  HERDVQNAPDFPEVWEHINQFYTPDKLVIAHNNRFDNSVLRNTLEHYNIEVPAYQTLDTV 115

Query: 98  VLARSNGLP---SALKAVGEALKLSSQ 121
             +R          L  V +AL +   
Sbjct: 116 ASSRQLIPGLTNYKLNTVCDALNIDLH 142


>gi|187933667|ref|YP_001886759.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721820|gb|ACD23041.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           B str. Eklund 17B]
          Length = 204

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 35/127 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV------------------------CVILFAFG 36
           M  LF D ET S    + C +     D                          +  F+  
Sbjct: 1   MKLLFFDTETTSIKPGSICQLSYITVDASSKPQITTGKNFFFTVDEMNPSAQEIHGFSLE 60

Query: 37  --FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIH 91
             ++    + +    + ++P+  K+ +E     ++ HN  F+   LK        D    
Sbjct: 61  KLYELSEGQYF----EDLVPEFFKDFIEAD--FLIGHNVNFDIRFLKHELSLLGEDFLPK 114

Query: 92  RWICTLV 98
              CT++
Sbjct: 115 HSFCTMI 121


>gi|297697407|ref|XP_002825850.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase subunit gamma-1-like
            [Pongo abelii]
          Length = 1247

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 801  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 854

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 855  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 908

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 909  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP 968

Query: 447  AFQKMASTT-----GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +++                A  +   +    W    +   W+                
Sbjct: 969  FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELHLPVDRTEGGWI 1028

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            + + ++K  R+        W +     E+  + G       + +            L   
Sbjct: 1029 SLQDLRKVQRETAR--KSQWRKWEVIAERAWKGGTESEMFNKLESIATSDIPRTPVLGCR 1086

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +    S           ++ +                  +VQ+ + D   ++   M    
Sbjct: 1087 I----SRALEPSAVREEFMTSR--------------VNWVVQSSAVDYLHLMLVAMKWLF 1128

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1129 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1171


>gi|116072599|ref|ZP_01469865.1| 3'-5' exonuclease [Synechococcus sp. BL107]
 gi|116064486|gb|EAU70246.1| 3'-5' exonuclease [Synechococcus sp. BL107]
          Length = 214

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 54/203 (26%), Gaps = 28/203 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M +L +D E          G+    +   + L         V              L+  
Sbjct: 29  MPSLAVDTE--------AMGLIHGRD--RLCLVQIADAQDRVACVRIGLGQSTAPNLQRL 78

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            E   V  V H + F+   L     LDI +    CT V +R  G             L  
Sbjct: 79  FEAASVEKVFHFARFDVAALA--AGLDIAVQPLFCTKVGSR-LGRTYT-----PRHGL-- 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                 K+L+      E  +     +     E   +   Y   DV        +LE +  
Sbjct: 129 ------KDLVMELVGVELDKGAQSSDWGRVDELTDVQLAYAANDVRYLLPARNQLETML- 181

Query: 181 KEQELWYLDQTINDRGYCVDVAL 203
             +E  +           V   L
Sbjct: 182 -RREGRWELAQRCFTCIPVIAEL 203


>gi|87201263|ref|YP_498520.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444]
 gi|87136944|gb|ABD27686.1| 3'-5' exonuclease [Novosphingobium aromaticivorans DSM 12444]
          Length = 205

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 43/181 (23%), Gaps = 34/181 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALE 62
           + +D ET          +        + +           L             LK  L 
Sbjct: 20  VAVDTET----------MGLITPRDRLCVVQISDGRGDEHLVRFSPGSAFAAPNLKAVLA 69

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           + +   + H + F+   ++    +        CT + ++          LK +   L   
Sbjct: 70  DPERLKLYHFARFDLAAIEHYLGVVAAP--VFCTKIASKLVRTYTDRHGLKDLVREL--- 124

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +           + ++      EY   DV     +   L    
Sbjct: 125 ---------LGKEISKQQQSSDWGAPTLTDAQQ------EYAASDVRHLHAMHTILVERL 169

Query: 180 S 180
            
Sbjct: 170 E 170


>gi|71083204|ref|YP_265923.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062317|gb|AAZ21320.1| ribonuclease D [Candidatus Pelagibacter ubique HTCC1062]
          Length = 203

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 51/175 (29%), Gaps = 18/175 (10%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           + L      +    +     +      L + L +  +  + H    +   +K        
Sbjct: 38  LCLIQISTGNSDAHIIQLDREKYDAPNLNKVLSDASIIKIFHYGRADMAHIKHYL--KTE 95

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            +  + T + ++          +  +   S       K LI  F           ++   
Sbjct: 96  TNNILDTKIASK----------LARSYSDS----HSLKTLIKEFM--NVDVSKQFQSSDF 139

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
             E      +YC  DV    +I + L  +  +E+ +      +      VD+ LA
Sbjct: 140 GGELSPAQLKYCANDVIYLHKIHEELNKILVREKRIDLYKSCLAFLKTRVDLDLA 194


>gi|148543638|ref|YP_001271008.1| exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|184153052|ref|YP_001841393.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227363391|ref|ZP_03847517.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227545077|ref|ZP_03975126.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300909253|ref|ZP_07126714.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|325682001|ref|ZP_08161519.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
 gi|148530672|gb|ABQ82671.1| Exonuclease, RNase T and DNA polymerase III [Lactobacillus reuteri
           DSM 20016]
 gi|183224396|dbj|BAG24913.1| DNA polymerase III epsilon subunit [Lactobacillus reuteri JCM 1112]
 gi|227071580|gb|EEI09877.1| DNA-directed DNA polymerase III [Lactobacillus reuteri MM2-3]
 gi|227184926|gb|EEI64997.1| DNA-directed DNA polymerase III [Lactobacillus reuteri CF48-3A]
 gi|300893118|gb|EFK86477.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri SD2112]
 gi|324978645|gb|EGC15594.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           reuteri MM4-1A]
          Length = 179

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 31/147 (21%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET      S   L    +   + A++   +      + H    W        
Sbjct: 2   MNFIAMDFETANGKRYSACSLALTIVRNGQIADEFYTL-----INPHTKFFWRNTQIHGI 56

Query: 46  ---DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTL 97
              D  + P  P+V +        D  ++AHN+ F+ +VL+     +N+++P ++ + T+
Sbjct: 57  HERDVQNAPDFPEVWEHINQFYTPDKLVIAHNNRFDNSVLRNTLEHYNIEVPAYQTLDTV 116

Query: 98  VLARSNGLP---SALKAVGEALKLSSQ 121
             +R          L  V +AL +   
Sbjct: 117 ASSRQLIPGLTNYKLNTVCDALNIDLH 143


>gi|33863970|ref|NP_895530.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313]
 gi|33635554|emb|CAE21878.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9313]
          Length = 214

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 52/194 (26%), Gaps = 35/194 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E          G+    +   + L         V              L++ +E 
Sbjct: 32  IAVDTE--------AMGLIHGRD--RLCLVQICDPADNVACVRIGLGQTSAPRLQKLMEA 81

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEAL-KLS 119
             V  V H + F+   L     L I +    CT V +R          LK V   L  + 
Sbjct: 82  PSVEKVFHFARFDVAALA--SGLGIYVLPIFCTKVASRLARTYSPRHGLKEVVMELVGVE 139

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                       E   +   Y   D        +RLE + 
Sbjct: 140 LDKQAQSSDWGR------------------VEELSDVQLAYAANDARYLLPARQRLEMML 181

Query: 180 SKEQELWYLDQTIN 193
            + +  W + Q   
Sbjct: 182 -RREGRWEIAQRCF 194


>gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
 gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
          Length = 627

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 36/140 (25%), Gaps = 32/140 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--------------------L 44
             D ET                   V L       H V                      
Sbjct: 445 AFDLETTGLDPRE----DAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLT 500

Query: 45  WDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
           W+ + D    + +  A         +VAHN  F+   L+    + I     + TL+LA  
Sbjct: 501 WEMLKDKPKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRK---VGIDQPPLVDTLLLAHL 557

Query: 103 NGL---PSALKAVGEALKLS 119
                    L+ + E   + 
Sbjct: 558 LFPDLKDHRLERLAERFGVP 577


>gi|83950782|ref|ZP_00959515.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
 gi|83838681|gb|EAP77977.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius nubinhibens ISM]
          Length = 231

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 54/192 (28%), Gaps = 45/192 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMP 54
           M  + +D ET         G   ++ D  ++      +                 +  MP
Sbjct: 1   MREIVLDTETT--------GFDPHSGD-RIVEIG-AVELFNHMPTGETYHQYINPERSMP 50

Query: 55  QVLK-------EALENTDVTI---------------VAHNSYFERTVLKACFNL----DI 88
           Q          + L +  V                 + HN+ F+   L A         I
Sbjct: 51  QEAFQVHGLGDDFLRDKPVFKRIGQAFLDFIGDAKLIIHNAAFDMKFLNAELGWMGLPQI 110

Query: 89  PIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDR 145
           P  + I TL +AR    G P++L A+     + +      G  L +        E +  R
Sbjct: 111 PWEQAIDTLEIARRRFPGSPASLDALCRRFNIDNSSRTLHGALLDSEILAEVYLELIGGR 170

Query: 146 NKPNHREAWRLF 157
                 +     
Sbjct: 171 QPDFSLKVVEKA 182


>gi|160892401|gb|ABX52080.1| RRP6-like protein 2 [Arabidopsis thaliana]
 gi|332006642|gb|AED94025.1| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
          Length = 870

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 62/235 (26%), Gaps = 35/235 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+E  ++     V H +  +   L+  F + +       T   +R   L           
Sbjct: 325 LREIFKDPKKKKVMHGADRDIIWLQRDFGIYV--CNLFDTGQASRVLNLERN-------- 374

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + L+  FC    ++   + +             Y + D      I+  ++
Sbjct: 375 --------SLEFLLQHFCGVTANKEYQNADWRIRPLP-EEMTRYAREDTHYLLYIYDLIK 425

Query: 177 ---------------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
                          PL    +  + +   + ++    + +  H                
Sbjct: 426 LELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQLAI 485

Query: 222 LESLTYGLVSSSRCLEKLKTW-LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
           +  L       +R  ++   + L  +  L +      +  ++    K   P   +
Sbjct: 486 VAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIER 540


>gi|313238124|emb|CBY13222.1| unnamed protein product [Oikopleura dioica]
          Length = 354

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 63/239 (26%), Gaps = 45/239 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA---L 61
            ID E  S        + +Y E   + L  F      V +        + + L      L
Sbjct: 25  AIDTEADS--------LHRYRES--LCLIQFSAKGESVLIDPL-----VIEDLSPLGSYL 69

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
             ++ T+  H + ++ T+ K  F     +     T + AR  G             L   
Sbjct: 70  --SEATVWMHGADYDMTMFKRQFGDLPKV--VYDTQIGARLLG--------ARRFGLGDL 117

Query: 122 -KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE----IFKRLE 176
             +  G EL     K         R             EY   DV    E    I  +L+
Sbjct: 118 VSLYFGVEL----SKSSQKADWGKRPLS------PKMIEYALNDVHYLLEMGDLIVTKLK 167

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            L   E  L              D        Q       +    L+ L     S +R 
Sbjct: 168 DLGRYEWFLESCTAARRRVLDRDDSKEETWRIQGSGKLDRRGLAFLKELWTWRDSEARS 226


>gi|242218119|ref|XP_002474853.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725980|gb|EED79945.1| predicted protein [Postia placenta Mad-698-R]
          Length = 882

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 34/179 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E  S          +      V L      +    + D +      + L E   
Sbjct: 268 EIAIDLEYHS---------YRTFGGF-VCLMQLSTREED-WVVDTLAVRDEMEALNEVFT 316

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSS 120
           ++ +  V H +  +   L+   + ++ I     T   ++    P  +L  + E     ++
Sbjct: 317 DSQIVKVLHGAESDIVWLQQ--DFNLYIVNLFDTYHASKVLDFPRHSLATLLEMYCDFTA 374

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K  +  +                R  P           Y + D      I+  L    
Sbjct: 375 DKRYQLADW-------------RIRPLP------EEMLAYARSDTHFLLYIYDNLRNAL 414


>gi|148555737|ref|YP_001263319.1| DNA polymerase III subunit epsilon [Sphingomonas wittichii RW1]
 gi|148500927|gb|ABQ69181.1| DNA polymerase III, epsilon subunit [Sphingomonas wittichii RW1]
          Length = 234

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 44/146 (30%), Gaps = 30/146 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-----------------AFGFDDHPVE 43
           M  +  D ET            +  E  CV L                  +  F+   V 
Sbjct: 1   MREIVFDTETTGLNP---ATGDRLVEIGCVELVNRVETGNSFHCYFNPQRSMPFEAEQVH 57

Query: 44  LWD---CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNL----DIPIHRWIC 95
                     P+    ++E L    D  +VAHN+ F+   L           + + R + 
Sbjct: 58  GLSERFLSDKPLFADKVEELLAFIGDAPLVAHNASFDFGFLNWELGACGRSIVDMGRMVD 117

Query: 96  TLVLARSNGLP--SALKAVGEALKLS 119
           TL +AR        +L A+     + 
Sbjct: 118 TLQIARKMHPGAKHSLDALCSRYGID 143


>gi|184154853|ref|YP_001843193.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260663117|ref|ZP_05864009.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226197|dbj|BAG26713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552309|gb|EEX25360.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 179

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 31/147 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-------KYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET S    + C +        +  ++   +      +      W        
Sbjct: 1   MNFIAMDFETASAKRFSACSLAITIVRNSQIQDEFYTL-----INPQTPFFWRNTQVHGI 55

Query: 46  ---DCVHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTL 97
              D    P  P+V    +     D  ++AHN+ F+ +VLK     F ++ P+++ + TL
Sbjct: 56  HERDVKDAPTFPEVWEHIQEFFTPDKLVIAHNATFDNSVLKNTLLHFEIEPPVYQTLDTL 115

Query: 98  VLARSN---GLPSALKAVGEALKLSSQ 121
             +R          L  + + L +   
Sbjct: 116 KTSRQLFPAFPNHKLNTICDQLNIDLH 142


>gi|85860425|ref|YP_462627.1| ribonuclease D [Syntrophus aciditrophicus SB]
 gi|85723516|gb|ABC78459.1| ribonuclease D [Syntrophus aciditrophicus SB]
          Length = 339

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 45/176 (25%), Gaps = 29/176 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E  S        +  + E   + L           ++D  +  +  Q L+    +
Sbjct: 78  ISLDTEYDS--------MHYFRE--KLCLVQVRA-SKRTYVFDPFNG-IDLQFLRPYFAD 125

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  V H    +  +LK  +  +        T   A   G                Q +
Sbjct: 126 PRLLKVTHAGDNDIRILKRDYGFEFR--NIFDTHRAAHMLGS---------------QYL 168

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                +               R+K   R        Y   D     ++++ L    
Sbjct: 169 ALSSIIEQYLGVEIEKTKKMQRSKWEARPLSEGQLRYAVQDTAYLADLYRHLNEKL 224


>gi|17380447|sp|P54099|DPOG1_MOUSE RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|9082197|gb|AAF82772.1|AF268975_1 mitochondrial DNA polymerase gamma [Mus musculus]
          Length = 1239

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R   +       G +   +   Q + 
Sbjct: 772  EINKMISFWRNAHKRISSQMVVWLPRSALP----RVVTRHPAFDEEGHYGAILP--QVVT 825

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 826  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAA 879

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 880  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQS 939

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA---- 502
              +++       L       K        +    +            +      T     
Sbjct: 940  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWV 999

Query: 503  -CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              + ++   R+        W +   A E+    G       + +   +        L   
Sbjct: 1000 SLQDLRMIRREASR--KSRWKKWEVAAERAWTGGTESEMFNKLESIAMSDTPRTPVLGCC 1057

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +   R+L    V                           +VQ+ + D   ++   M    
Sbjct: 1058 IS--RALEPSVVQGEFITSR----------------VNWVVQSSAVDYLHLMLVAMKWLF 1099

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1100 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1142


>gi|229472359|gb|ACQ72694.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 60/274 (21%), Gaps = 97/274 (35%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRKLFKASPGQIMVGADLSGIELRMLAHYL-------ARYDEGRYADVLLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L+                     
Sbjct: 63  ADKIGISRRQVKTVTYAFLYGAGDAKL---GKSYDAQLSEQQAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L   +    E            
Sbjct: 104 -------------------KKGKEIRQAYMDAVPGLEKLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GFINLCDGRRCTVDGAH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMM----NATKAGYDIVLTVHDE 631
           +Q  +  +    ++    N  +     +  VHDE
Sbjct: 157 LQGSAGVLAKRWLLINHDNTRELCCSQLAFVHDE 190


>gi|320449814|ref|YP_004201910.1| DNA polymerase III subunit epsilon [Thermus scotoductus SA-01]
 gi|320149983|gb|ADW21361.1| DNA polymerase III, subunit epsilon [Thermus scotoductus SA-01]
          Length = 637

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 32/140 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDH----------PVELWD 46
             D ET          I   A    ++         F    +                W+
Sbjct: 455 AFDLETTGLDPEKDAIIALGAVH--ILGKTVLRHEVFEALVNPGRPIPKASTEVHGLTWE 512

Query: 47  CVHDPVMPQVLKE----ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            + +    + +       LE+    ++AHN  F+   L+    + I     + TL+L+  
Sbjct: 513 MLKEKPKLEEVLPGFRLFLED--TVLLAHNGAFDMAFLRR---VGIDQPPLVDTLLLSYL 567

Query: 103 NGL---PSALKAVGEALKLS 119
                    L+ + E   + 
Sbjct: 568 LFPDLQDHRLETLAERFGVP 587


>gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
 gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
          Length = 412

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D     V+    +  + +    +VAHN+ F+   L+       +   I   + T++L+
Sbjct: 281 VVDKPPAGVVLPQFRSYVADA--VLVAHNAAFDLKFLRMREKDMGIRFDI-PVLDTMILS 337

Query: 101 RSNGLP---SALKAVGEALKLS 119
                P    +L  + +   + 
Sbjct: 338 NFLDGPDAGHSLDDICDRYGIE 359


>gi|294009991|ref|YP_003543451.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
 gi|292673321|dbj|BAI94839.1| DNA polymerase III epsilon subunit [Sphingobium japonicum UT26S]
          Length = 230

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 58/181 (32%), Gaps = 43/181 (23%)

Query: 1   MATLFIDFETR-----SPIDLTKCG-------------ICKY--------AEDVCVILFA 34
           M  +  D ET      S   L + G                Y        A    V   +
Sbjct: 1   MREIIFDTETTGFDPASGDRLVEIGCIELLNRVPTGRTFHAYYNPQRSMPAAAEAVHGLS 60

Query: 35  FGF-DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIP 89
             F  D P+      H     + L   LE++ +  VAHN+ F+   L     L    ++ 
Sbjct: 61  DSFLRDKPLF----SHG---VEELLAFLEDSHL--VAHNARFDFGFLNHELRLCGLPEVS 111

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRN 146
           + R I T+ +AR        +L A+     +  S +++ G  L A        E    R 
Sbjct: 112 MARMIDTVAIARQLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIELTGGRQ 171

Query: 147 K 147
            
Sbjct: 172 I 172


>gi|302824807|ref|XP_002994043.1| hypothetical protein SELMODRAFT_138110 [Selaginella moellendorffii]
 gi|300138097|gb|EFJ04877.1| hypothetical protein SELMODRAFT_138110 [Selaginella moellendorffii]
          Length = 328

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 53/189 (28%), Gaps = 24/189 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E    +DL        A    + +    F D  + L D       + Q  K ALE
Sbjct: 43  IGLDCE---GVDL--------ARHGRLCIMQLAFQDA-IYLVDAVQGGDALMQACKAALE 90

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL----KAVGEALKL 118
           +  VT V H+   +   L   F   I ++    T +      L              + L
Sbjct: 91  SPHVTKVVHDCKRDSEAL--YFQHGIKLNNVFDTQIAHSLIELQQGRQWIPDDCISFVDL 148

Query: 119 SSQ-KMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLE 176
            +  K   G   +A   K E    L    +         +       DV     I + + 
Sbjct: 149 LADAKYCVG---VAYDEKDEVRSLLRKDPEFWTHRPLTNMMKRAAADDVRFLLRIHRNMV 205

Query: 177 PLSSKEQEL 185
                    
Sbjct: 206 QRLDAFSAW 214


>gi|209963909|ref|YP_002296824.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
 gi|209957375|gb|ACI98011.1| 3'-5' exonuclease [Rhodospirillum centenum SW]
          Length = 212

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 25/148 (16%)

Query: 4   LFIDFETR-------SPIDLTKCGICKYAEDVCVI---------LFAFGFDD-HPVELWD 46
           L IDFET          I L +    +       +          F        P ++ D
Sbjct: 8   LAIDFETANEQRASACSIGLCRVENGRVVRTAEYLIRPPELRFTPFTIAIHGIRPEDVVD 67

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN 103
               P +   ++  LE     ++AHN+ F+ +VL+A    + L +P H ++CTLV AR  
Sbjct: 68  APEFPDIWDAMRPELE--GAVLLAHNASFDMSVLRAMLGTYGLAVPDHGYLCTLVAARRA 125

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKE 128
                   L  +     +  +    G +
Sbjct: 126 WPDLEKHRLNHLARQFGIELEHHRAGSD 153


>gi|297184397|gb|ADI20513.1| ribonuclease d [uncultured alpha proteobacterium EB080_L58F04]
          Length = 387

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 56/199 (28%), Gaps = 43/199 (21%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF----DDHPVELWDCVHDPV 52
             + ID E     T                   + L         DDH V +    H   
Sbjct: 21  DYVTIDTEFLRERTYYS---------------KLCLIQLAVPGKGDDHAVLVDPLAHGLK 65

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
           +   L    E+  V  V H +  +  +   C +  +       T V A   G        
Sbjct: 66  L-DALYALFEDETVVKVFHAARQDLEIF--CVDAGVLPKPLFDTQVAAMVCGF------- 115

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           GE +   +   +  K  I +  +         R     +        Y   DVT  R+++
Sbjct: 116 GEQVGYETLVRKITKNSIDKSSRFTDWS---RRPLTEAQ------KSYALADVTHLRQVY 166

Query: 173 KRLEPLSSKEQELWYLDQT 191
           + L     K     ++++ 
Sbjct: 167 EFLRAKIEKTGRGPWVEEE 185


>gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
          Length = 388

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 47/190 (24%), Gaps = 31/190 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E          G   Y     V L           + D +    + + L    E+
Sbjct: 29  ISVDTE--------SSGYYTYFS--KVCLIQISA-KGKNYIIDPLKLQNL-ESLGNLFED 76

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  + H++  +   LK  F           T   +R                     +
Sbjct: 77  KKILKIFHSAIDDIKALKKDFGFQFQ--NIADTGFSSRLLD-------------HEQYSL 121

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L+  + K +  +     N        +   +Y   D      I+++++    K  
Sbjct: 122 TY---LVDYYHKIKLSKKEQKSNWEKRPLE-KSQLQYAALDTVYLETIWEKMKEELIKRN 177

Query: 184 ELWYLDQTIN 193
                     
Sbjct: 178 LYEEAISEFE 187


>gi|15239221|ref|NP_198440.1| 3'-5' exonuclease domain-containing protein / helicase and RNase D
           C-terminal domain-containing protein / HRDC
           domain-containing protein [Arabidopsis thaliana]
          Length = 838

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 62/235 (26%), Gaps = 35/235 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+E  ++     V H +  +   L+  F + +       T   +R   L           
Sbjct: 293 LREIFKDPKKKKVMHGADRDIIWLQRDFGIYV--CNLFDTGQASRVLNLERN-------- 342

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + L+  FC    ++   + +             Y + D      I+  ++
Sbjct: 343 --------SLEFLLQHFCGVTANKEYQNADWRIRPLP-EEMTRYAREDTHYLLYIYDLIK 393

Query: 177 ---------------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
                          PL    +  + +   + ++    + +  H                
Sbjct: 394 LELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQLAI 453

Query: 222 LESLTYGLVSSSRCLEKLKTW-LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
           +  L       +R  ++   + L  +  L +      +  ++    K   P   +
Sbjct: 454 VAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIER 508


>gi|15887364|ref|NP_353045.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str.
           C58]
 gi|15154863|gb|AAK85830.1| DNA polymerase III, epsilon chain [Agrobacterium tumefaciens str.
           C58]
          Length = 232

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 45/173 (26%), Gaps = 29/173 (16%)

Query: 1   MATLFIDFETRSPIDL-------------------TKCGICKYAEDVCVILFAFGFDDHP 41
           M  +  D ET                             +    ED  V   A       
Sbjct: 1   MREIIFDTETTGLESKLDRVIEIGGIELINHFPTGRTLHLYISPEDRKVHPDALAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICT 96
            E   D      +   ++E         VAHN+ F+               +       T
Sbjct: 61  DEFLKDKPKFAEVIDQIREFF--DGARWVAHNATFDMGFINAEFARLGIEPVSAELVTDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           L LAR      P++L A+     + +  + + G  L +        E +  R 
Sbjct: 119 LSLARRKNPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQ 171


>gi|109082314|ref|XP_001092360.1| PREDICTED: DNA polymerase subunit gamma-1 [Macaca mulatta]
          Length = 1228

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/401 (12%), Positives = 108/401 (26%), Gaps = 50/401 (12%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 782  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 835

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 836  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 889

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   KV      Y  G  
Sbjct: 890  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKVFNYGRIYGAGQP 949

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +++       L       K           + +           + E  ++       
Sbjct: 950  FAERLLMQFNHRLTQQEAAEKAQ---------QMYAITKGLRWYRLSDEGEWLVRELHLP 1000

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                      + +L     +A  ++      +IA +       +    ++ +   L S  
Sbjct: 1001 VDRTEGGWISLQDLRKVQREAARKSHRKKWEVIAER------AWKGGTESEMFNKLES-- 1052

Query: 567  SLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRD---ILAEGMMNATKA 620
             +   D+          +R L      G  +      +VQ+ + D   ++   M    + 
Sbjct: 1053 -IATSDIPRTPVLGCRISRALEPSAVQGEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEE 1111

Query: 621  GY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
                    +++HDE+     + D + A+       +L   M
Sbjct: 1112 FAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1152


>gi|315054289|ref|XP_003176519.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
 gi|311338365|gb|EFQ97567.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
          Length = 827

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 14/130 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y     V L      +    +          Q+L E  
Sbjct: 271 KEIAVDLE--------HHDGHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQILNEVF 320

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK-AVGEALKLS 119
            +  +  V H S  +   L+      + +     T   A    LP  +LK  + E +   
Sbjct: 321 ADPSIVKVLHGSSMDVIWLQRDLG--LYLVGLFDTFHAASVLQLPKKSLKFLLHEYVGFD 378

Query: 120 SQKMEEGKEL 129
           + K  +  + 
Sbjct: 379 ADKKYQTADW 388


>gi|91974903|ref|YP_567562.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
 gi|91681359|gb|ABE37661.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 231

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 49/188 (26%), Gaps = 31/188 (16%)

Query: 1   MATLFIDFETRSPIDLT-----KCG-ICKYAEDVCVILF-------------AFGFDDHP 41
           M  + +D ET     L      + G +  Y        F             AF      
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQAFHRYINPERDMPAEAFAVHGLS 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICT 96
            E   D      +     + + +    +V HN+ F+       L       IP  R + T
Sbjct: 61  AEFLADKPLFAQVVDEFLDFIGDA--PLVIHNASFDAGFLNAELARLSRAAIPRERLVDT 118

Query: 97  LVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKPNHR 151
           L+LAR      +  L  +     + + +  +   L+                        
Sbjct: 119 LLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILAE 178

Query: 152 EAWRLFGE 159
                 G+
Sbjct: 179 VPSERAGQ 186


>gi|332250403|ref|XP_003274341.1| PREDICTED: exosome component 10 [Nomascus leucogenys]
          Length = 912

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 62/230 (26%), Gaps = 38/230 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 336 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 393 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 448

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---------- 181
                        R  P           Y + D      I+ ++     +          
Sbjct: 449 -----------RIRPLP------EEMLSYARDDTHYLLYIYDKMRLELWERGNGQPVQLQ 491

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
              Q    +      +    D +      +      T+     + L    
Sbjct: 492 VVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWR 541


>gi|84514924|ref|ZP_01002287.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Loktanella vestfoldensis SKA53]
 gi|84511083|gb|EAQ07537.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Loktanella vestfoldensis SKA53]
          Length = 228

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 33/179 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           M  + +D ET            +  E   V L                    MP      
Sbjct: 1   MREIVLDTETTGFEPSEG---DRIVEIGAVELIGH-MPTGRTYHQYINPQRTMPAEAFAV 56

Query: 57  ------------LKEALENTDVTIVA------HNSYFERTVLKACFNL----DIPIHRWI 94
                       L + + +  +T +       HN+ F+   L A         +P++R +
Sbjct: 57  HGLGDDFLADKPLFKDIADDFLTFIGDAKLVIHNAAFDMKFLNAELGWLHKPALPMNRAV 116

Query: 95  CTLVLARSN--GLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNH 150
            TL++AR    G P++L A+     + +  +   G  L +        E +  R     
Sbjct: 117 DTLMIARRKFPGSPASLDALCRRFGIDNAARTLHGALLDSEILAEVYLELIGGRQPDFA 175


>gi|115522405|ref|YP_779316.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
 gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 229

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 37/200 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVI----------LF----------AFGFDDH 40
           M  + +D ET     L    +      V ++           +          AF     
Sbjct: 1   MREIVLDTETTGLDPLRGDRL-VEIGCVEILNRMPTGQIYHCYINPERDMPAEAFAVHGL 59

Query: 41  PVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRW 93
             E            + +     + +    +V HN+ F+       L       IP  R 
Sbjct: 60  SAEFLSTKPLFA--EVAEEFLAFIADA--PLVIHNASFDIGFINAELARLSQPPIPRDRL 115

Query: 94  ICTLVLARSNGLPSA--LKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNH 150
           + TL+LAR      +  L  +     + + ++ + G  L A        + +  R     
Sbjct: 116 VDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLIGARQSQ-- 173

Query: 151 REAWRLFGEYCKGDVTVTRE 170
                   E         R 
Sbjct: 174 LILAETGSERASRAADAPRR 193


>gi|224142834|ref|XP_002324746.1| predicted protein [Populus trichocarpa]
 gi|222866180|gb|EEF03311.1| predicted protein [Populus trichocarpa]
          Length = 331

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 57/191 (29%), Gaps = 23/191 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G         ++  AF      + L D       + +  K AL
Sbjct: 47  IIGFDCE---GVDLCRHGTLC------IMQLAF---PDAIYLVDAIKGGESLIRACKPAL 94

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL----K 117
           E++ +T V H+   +   L   F   I +H  + T +             + +       
Sbjct: 95  ESSHITKVIHDCKRDSEAL--YFQFGIKLHNVVDTQIAYSQIEEQEGRTRLPDDYISFVG 152

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLE 176
           L +     G   I+   K E    L              +       DV     I+ ++ 
Sbjct: 153 LLADPRYCG---ISYLEKEEVRVLLRQDPMFWTYRPLSEMMIHAAADDVRFLLRIYYKMM 209

Query: 177 PLSSKEQELWY 187
              ++    + 
Sbjct: 210 EKLNQRSLWYL 220


>gi|311347852|gb|ADP90871.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 846

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 847  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 900

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 901  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP 960

Query: 447  AFQKMASTT-----GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +++                A  +   +    W    +   W+                
Sbjct: 961  FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI 1020

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            + + ++K  R+        W +     E+  + G       + +            L   
Sbjct: 1021 SLQDLRKVQRETAR--KSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCC 1078

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +    S           ++ +                  +VQ+ + D   ++   M    
Sbjct: 1079 I----SRALEPSAVQEEFMTSH--------------VNWVVQSSAVDYLHLMLVAMKWLF 1120

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1121 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1163


>gi|229472459|gb|ACQ72744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 58/275 (21%), Gaps = 99/275 (36%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRKLFKASPGQIMVGADLSGIELRMLAHYL-------ARYDEGRYADVLLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L+                     
Sbjct: 63  ADKIGISRRQVKTVTYAFLYGAGDAKL---GKSYDAQLSEQQAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L   +    E            
Sbjct: 104 -------------------KKGKEIRQAYMDAVPGLEKLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GFINLCDGRRCTVDGAH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMMNATKAGYD-----IVLTVHDE 631
           +Q  +  +    ++              +  +HDE
Sbjct: 157 LQGSAGVLAKRWLL-INHNNTRELCCSQLAFIHDE 190


>gi|156539953|ref|XP_001602202.1| PREDICTED: similar to AT02241p, partial [Nasonia vitripennis]
          Length = 1031

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/503 (12%), Positives = 147/503 (29%), Gaps = 71/503 (14%)

Query: 174 RLEPLSSKEQELWYLDQTIND-RGYCV-----------DVALAHTLNQIVDVERTKLDQE 221
               L +   E + L    N   G+ V           D  L             +   +
Sbjct: 487 ITPKLLNLTWEQYPLYHIKNHGWGFLVKDLNKCDIKPSDCELLSQTTAKKLQSSNQCLTK 546

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLE---DLTETTCQRVLSSNKKLTPQAIQVFN 278
           L+S            +      F +         ++     +  L++  K          
Sbjct: 547 LKSF--DKNFKPSLPDNKIENFFFKLPHKNGILFNVGSPLSKDFLNNFSKN-------IL 597

Query: 279 NRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGA-----SRTGRWSGCVFPPQNL-PRP 332
           + +  S S +++++ +      + R R   Q +       +   + S        + P+ 
Sbjct: 598 DSITTSTSRIIEISKMSSYW-KNNRDRILSQLVIWLDSKQNVNSKNSTNYINFGAIIPQV 656

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
             S     + +   PT +T+     + I   +R  + A  G  ++ AD+   E  + + +
Sbjct: 657 IVSGTLTRRAVE--PTWMTASNAHCERIGSELRGIINAPSGYSIIGADVDSQELWIASII 714

Query: 393 AGEQWKLKAFETGEDLY------VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
                K                   +     +   A+     R   KV+  A  Y  G K
Sbjct: 715 GDAFKKDIKIHGSTPFSWMTLIGNKSDGTDMHSVTAKAIGINRDQAKVLNYARIYGAGQK 774

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
             +++      ++      +K+          + + R  ++   E+    L+        
Sbjct: 775 FAERLLKQFNPSITDKEAALKSKH-IYLMTKGKKYYRLKKQYVSENLSNKLYTSYEA--- 830

Query: 507 KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                    ++S++  +L     +  +      +     +  +  + + +   L     R
Sbjct: 831 --------FKISQIHKKLRDEVFEKGKWIGGSESVMFNSLEEIAEQNEPSTPFLNCRLSR 882

Query: 567 SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNATKAGYD 623
           +L Y                  +   +       +VQ+ + D   ++   M    K    
Sbjct: 883 ALEY-----------------EKNEKFLPTKINWVVQSGAVDFLHLILVTMRWLMKDKAR 925

Query: 624 IVLTVHDEIVCETPDTDEFNASM 646
           + L+ HDE+    P   ++NA++
Sbjct: 926 LCLSFHDEVRYLVPSEYKYNAAL 948



 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 60/196 (30%), Gaps = 41/196 (20%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
            I+L       Y++           D+      D      MP+            I+ HN
Sbjct: 167 EINLQMLSKNLYSQIFES-----SVDNKE--QIDVDKFQQMPK-----------IIIGHN 208

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLA----------RSN-------GLPSALKAVGEA 115
             F+R  +K  + L+    +++ T+ L           R+             LK++   
Sbjct: 209 VSFDRVRVKEQYWLNPSATKFLDTMALHICISGLSSYQRAILKSTNSKDEHEHLKSISSL 268

Query: 116 LKL-SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
             L    K   G  L  +      +  + D  K  +         YC  DV  T +IFK+
Sbjct: 269 NSLSDIHKFYYGFNLNKQGRDIFMNGEIQDIKKQFNESML-----YCASDVVATHKIFKK 323

Query: 175 LEPLSSKEQELWYLDQ 190
           + P+  K         
Sbjct: 324 MFPIFIKRFPHPATLA 339


>gi|67970274|dbj|BAE01480.1| unnamed protein product [Macaca fascicularis]
          Length = 673

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 62/230 (26%), Gaps = 38/230 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---------- 181
                        R  P           Y + D      I+ ++     +          
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDKMRLELWERGNGQPVQLQ 467

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
              Q    +      +    D +      +      T+     + L    
Sbjct: 468 VVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWR 517


>gi|313631120|gb|EFR98660.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 80

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 45/78 (57%)

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
             +   ++S  +R+  IA +G    + D + IEARV+AW+AGEQW+L  F +   +Y  +
Sbjct: 3   YSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEAS 62

Query: 413 YARSFNVAPAQVTKDQRA 430
            ++ F++   +V K+ R 
Sbjct: 63  ASQMFHIPIEEVDKNLRQ 80


>gi|170719039|ref|YP_001784196.1| hypothetical protein HSM_0864 [Haemophilus somnus 2336]
 gi|168827168|gb|ACA32539.1| conserved hypothetical protein [Haemophilus somnus 2336]
          Length = 212

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 50/166 (30%), Gaps = 34/166 (20%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDP----------VMPQVLKEALENTDVTIVAHNS-YFE 76
             +++     DD    L+ C                   L++ +      ++ HN   F+
Sbjct: 59  GEIVVIGAAVDDTSPVLFYCEDWQLPDRETRILTQFNDWLRKHITKATPLMIGHNITKFD 118

Query: 77  -RTVLKACFNLDIPI------HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            R + +      I        H    T+      G   +L  + + L +  +   +G ++
Sbjct: 119 DRFIFQRSVINRIKPCYTPLRHNIYDTMTEWAGYGNTVSLDKLCKVLDIEQKGDIDGSKV 178

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                 G                      +YC  DV   REI+KR+
Sbjct: 179 WQYIQDG----------------KINEVAQYCAKDVERVREIYKRM 208


>gi|21328725|gb|AAM48731.1| DNA polymerase III, epsilon subunit [uncultured marine
           proteobacterium]
          Length = 231

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 34/160 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET            +  E   V LF                      AF   
Sbjct: 1   MREIVLDTETTGFEPSEG---DRIVEIGAVELFNHLPTGRTYHQYINPERNMPEAAFNVH 57

Query: 39  D-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRW 93
                 L D      + Q   + + ++   +V HN+ F+   L A         +P  + 
Sbjct: 58  GLSEEFLSDKPIFKNIAQEFIDFIADS--KLVIHNASFDMKFLNAELGWVNRPALPNDQT 115

Query: 94  ICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIA 131
           I TL +AR    G P++L A+     + +        L+ 
Sbjct: 116 IDTLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLD 155


>gi|327479994|gb|AEA83304.1| ribonuclease D [Pseudomonas stutzeri DSM 4166]
          Length = 374

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 72/272 (26%), Gaps = 35/272 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  +     ++      D     L D        P      L+
Sbjct: 27  VAVDTE--------FMRVDTFYPIAGLVQVG---DGRRAYLIDPLAVRDWHP--FATLLD 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  V H    +  VL               T + A    +  ++             
Sbjct: 74  DAAVVKVLHACSEDLEVLLRLTGSL--PQPLFDTQLAAGYLNIGFSMG------------ 119

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                 L+      E  +     +      +  +   Y   D     E+++ L P  S +
Sbjct: 120 ---YSRLVQAVLGIELPKGETRSDWLQRPLS-EMQVRYAAEDAQHLAELYEALLPKLSDD 175

Query: 183 QELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           +  W L+             D   A+   +     + +    L+ LT      +R   + 
Sbjct: 176 KRAWVLEDGAELVANLQRESDPEEAYREVKQAWRLKPQQLAVLKVLTAWRERQARARNQP 235

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  +  E  L     T+      L+   ++ P
Sbjct: 236 RNRVLREASLWPLARTQPCDLVTLARIDEMHP 267


>gi|197105155|ref|YP_002130532.1| ribonuclease D [Phenylobacterium zucineum HLK1]
 gi|196478575|gb|ACG78103.1| ribonuclease D [Phenylobacterium zucineum HLK1]
          Length = 392

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 71/273 (26%), Gaps = 43/273 (15%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L           + D + D +      
Sbjct: 23  VAVDTEFMRETTYW---------------PKLCLIQAAAPSAEA-VIDPLADDIDLSCFL 66

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L +  +  V H +  +  +      L         T V              G A   
Sbjct: 67  DILRDESIQKVFHAARQDVEIFNN---LGAMPKPLFDTQVA-------------GMAAGF 110

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             Q       L+ +  K E  +     +      +      Y   DVT   +++  L   
Sbjct: 111 GEQ--IAYDALVRQMLKIEIDKSSRFTDWARRPLSDSQLT-YALADVTHLAKLYPLLRQR 167

Query: 179 SSKEQELWYLDQTINDRGYCVDVALA-HTLNQIVDVER--TKLDQELESLTYGLVSSSRC 235
             +E  L ++   +ND     +  +      + +   R   K      ++      +++ 
Sbjct: 168 LEREGRLAWVTDEMNDLTDPANYDVEPENAWKRLRPRRHTAKYLAVYRAVAAWRERTAQL 227

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
            ++ +  +  +  +        T    L   + 
Sbjct: 228 RDQPRGRILKDDAIDEIATQTPTDADALDRLRS 260


>gi|47498064|ref|NP_998833.1| exosome component 10 [Xenopus (Silurana) tropicalis]
 gi|45708813|gb|AAH67962.1| exosome component 10 [Xenopus (Silurana) tropicalis]
          Length = 883

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+  N  +  V H +
Sbjct: 308 VDLEHHSYRSFLGLTCLMQISTRTED---YIIDVLELRSNMYILNESFTNPSIIKVLHGA 364

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F L I       T   AR   L   +L  +      + S K  +  +   
Sbjct: 365 DSDIEWLQKDFGLYI--VNMFDTHQAARILNLGRHSLDHLLRLYCNVESDKRYQLADW-- 420

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQ 190
                        R  P          EY + D      I+ ++   L     E   L Q
Sbjct: 421 -----------RIRPLP------EEMIEYARADTHYLLFIYDKMRTALLGAANEQQNLLQ 463

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  +   + +          D       ++ + L
Sbjct: 464 LVWQKSRDICLKKFTKSIFTEDSYLELYQKQKKHL 498


>gi|316931718|ref|YP_004106700.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           DX-1]
 gi|315599432|gb|ADU41967.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 232

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 48/193 (24%), Gaps = 43/193 (22%)

Query: 1   MATLFIDFETRSPIDL------------------TKCGICKY--------AEDVCVILFA 34
           M  + +D ET     L                  T     +Y        AE   V   +
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHRYLNPERDMPAEAFAVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPI 90
             F               +     E + +    +V HN+ F+       L       +P 
Sbjct: 61  AEFLADK----PLFA--QVADEFLEFIGDD--PLVIHNASFDIGFINAELSRLSRAPVPR 112

Query: 91  HRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDR 145
            R + TL+LAR      +  L  +     + + +  +   L+                  
Sbjct: 113 DRLVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQS 172

Query: 146 NKPNHREAWRLFG 158
                     + G
Sbjct: 173 QLILADVPAEVVG 185


>gi|108997029|ref|XP_001103741.1| PREDICTED: exosome component 10-like isoform 4 [Macaca mulatta]
          Length = 884

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 62/230 (26%), Gaps = 38/230 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---------- 181
                        R  P           Y + D      I+ ++     +          
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDKMRLELWERGNGQPVQLQ 467

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
              Q    +      +    D +      +      T+     + L    
Sbjct: 468 VVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWR 517


>gi|42520085|ref|NP_966000.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409822|gb|AAS13934.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 392

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 53/196 (27%), Gaps = 34/196 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E     +L             + L    +      + D +   +    +K+ +
Sbjct: 22  KFIAVDTE-FIRNNLIYY--------PKLSLIQISY-GEKSFIVDALVPEIDLSFIKKIM 71

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA----RSNGLPSALKAVGEALK 117
            N  +T V H+   +   L   F           T V A      +              
Sbjct: 72  LNQGITKVFHSCRQDIESLLTVF--KCIPTPIFDTQVAAMFCHYYHDF------------ 117

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K+ E  + IA       +     R     +        Y   DV    ++++ L  
Sbjct: 118 IGYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLD------YAVNDVVHLYDLYQILCN 171

Query: 178 LSSKEQELWYLDQTIN 193
              +   + +  + + 
Sbjct: 172 KLEENNRMGWFQEEME 187


>gi|47934610|gb|AAT39743.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 96

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 25/115 (21%)

Query: 283 ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQI 342
             +  V ++ + +E ++ + R+ G +   GA  TGR +        +P  S         
Sbjct: 2   LGKERVAQVESWLEFVSDEHRVHGKVITNGA-VTGRMTHHSPNMAQVPSSSSP------- 53

Query: 343 ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
                                 R C    EGK LV AD + +E R+LA    ++ 
Sbjct: 54  -----------------WGHECRDCWTVDEGKILVGADASSLELRMLAHYMKDES 91


>gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 328

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 25/139 (17%)

Query: 6   IDFETRSPIDLT-----KCGICKYAEDVCV-------------ILFAFGFDDHPVELWDC 47
           +DFET            + G+   A D  +             I   +      VEL   
Sbjct: 20  VDFETTGLNPARGDRAIEIGLVHVAPDGTLEDEHETLIRVHRDIGAQWIHHISAVELIHA 79

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHR--WICTLVLARS 102
                + + L++ L       VAHN  F+   L         DIP++    +CT+ L+RS
Sbjct: 80  PEFEGIARELRDLLA--GRVFVAHNVAFDSKFLLSEYRRLGADIPVNSHTMLCTMKLSRS 137

Query: 103 NGLPSALKAVGEALKLSSQ 121
                +L        + ++
Sbjct: 138 LIGVGSLADCCREFGIDNE 156


>gi|99034557|ref|ZP_01314528.1| hypothetical protein Wendoof_01000660 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 409

 Score = 56.7 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 53/196 (27%), Gaps = 34/196 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E     +L             + L    +      + D +   +    +K+ +
Sbjct: 39  KFIAVDTE-FIRNNLIYY--------PKLSLIQISY-GEKSFIVDTLVPEIDLSFIKKIM 88

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA----RSNGLPSALKAVGEALK 117
            N  +T V H+   +   L   F           T V A      +              
Sbjct: 89  LNQGITKVFHSCRQDIESLLTVF--KCIPTPIFDTQVAAMFCHYYHDF------------ 134

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K+ E  + IA       +     R     +        Y   DV    ++++ L  
Sbjct: 135 IGYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLD------YAVNDVVHLYDLYQILCN 188

Query: 178 LSSKEQELWYLDQTIN 193
              +   + +  + + 
Sbjct: 189 KLEENNRMGWFQEEME 204


>gi|297282176|ref|XP_001103657.2| PREDICTED: exosome component 10-like isoform 3 [Macaca mulatta]
          Length = 884

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 62/230 (26%), Gaps = 38/230 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 336 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 393 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 448

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---------- 181
                        R  P           Y + D      I+ ++     +          
Sbjct: 449 -----------RIRPLP------EEMLSYARDDTHYLLYIYDKMRLELWERGNGQPVQLQ 491

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
              Q    +      +    D +      +      T+     + L    
Sbjct: 492 VVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWR 541


>gi|153005072|ref|YP_001379397.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
 gi|152028645|gb|ABS26413.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
          Length = 296

 Score = 56.3 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 51/203 (25%), Gaps = 35/203 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E+ S           Y E   + L           +     D   P  L E L 
Sbjct: 31  VVALDTESNS--------FHVYRE--RICLLQVSTRAADYIVDPLAVD---PSPLGEVLC 77

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQ 121
           +   T V H + ++   L+  +   +P  R   T+  AR  G     L A+ EA      
Sbjct: 78  DGRET-VLHGADYDVRCLRREYGWHLP--RLFDTMAAARRLGRQGLGLSALVEAH----- 129

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
               G  L   F           R     + A      Y   D      +   L      
Sbjct: 130 ---FGVRLSKTF----QRSDWGQRPLTAAQLA------YAALDTHYLLALRDMLAGELDT 176

Query: 182 EQELWYLDQTINDRGYCVDVALA 204
                   +        V     
Sbjct: 177 LGASEQARREFERIAAVVARERV 199


>gi|163742520|ref|ZP_02149906.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10]
 gi|161384105|gb|EDQ08488.1| exonuclease, putative [Phaeobacter gallaeciensis 2.10]
          Length = 226

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 49/200 (24%), Gaps = 38/200 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    +            L   LE
Sbjct: 41  VVAIDCET--------MGLNPHRD--RLCVVQLSGGDGNAHMVQIAKGQSEAPNLCAMLE 90

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           + +V  + H   F+   +   F          CT + +R                   + 
Sbjct: 91  DLNVLKLFHFGRFDIAAMYHAFG--ALAAPVYCTKIASRLV-----------------RT 131

Query: 123 MEEGKELIARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
             +   L     +    +    +   +    +      +Y   DV     +   L+    
Sbjct: 132 YTDRHGLRNLTQELIGVDISKQQQMSDWGAAQLSDAQLDYAASDVLHLHRLRAALDKRLD 191

Query: 181 KEQELWYLDQTINDRGYCVD 200
           +E               C D
Sbjct: 192 RED-------RSEMAQACFD 204


>gi|58698273|ref|ZP_00373191.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630014|ref|YP_002726805.1| Ribonuclease D [Wolbachia sp. wRi]
 gi|225677056|ref|ZP_03788062.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|58535197|gb|EAL59278.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225590902|gb|EEH12123.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591995|gb|ACN95014.1| Ribonuclease D [Wolbachia sp. wRi]
          Length = 392

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 53/196 (27%), Gaps = 34/196 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E     +L             + L    +      + D +   +    +K+ +
Sbjct: 22  KFIAVDTE-FIRNNLIYY--------PKLSLIQISY-GEKSFIVDALVPEIDLSFIKKIM 71

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA----RSNGLPSALKAVGEALK 117
            N  +T V H+   +   L   F           T V A      +              
Sbjct: 72  LNQGITKVFHSCRQDIESLLTVF--KCIPTPIFDTQVAAMFCHYYHDF------------ 117

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K+ E  + IA       +     R     +        Y   DV    ++++ L  
Sbjct: 118 IGYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLD------YAVNDVVHLYDLYQILCN 171

Query: 178 LSSKEQELWYLDQTIN 193
              +   + +  + + 
Sbjct: 172 KLEENNRMGWFQEEME 187


>gi|83953070|ref|ZP_00961792.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1]
 gi|83842038|gb|EAP81206.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. NAS-14.1]
          Length = 228

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 41/182 (22%)

Query: 1   MATLFIDFETR-----SPIDLTKCGI-------------CKY--------AEDVCVILFA 34
           M  + +D ET      S   + + G               +Y        AE   V    
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPERSMPAEAFEVHGL- 59

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLD-IPI 90
                    L D      + Q   + + ++   +V HN+ F+   L        L  IP 
Sbjct: 60  -----GDEFLRDKPKFAQIGQDFLDFIGDS--KLVIHNAAFDIKFLNAELKWMGLPQIPW 112

Query: 91  HRWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNK 147
            + + TL +A  R  G P++L A+     + +      G  L +        E +  R  
Sbjct: 113 EQALDTLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLELIGGRQP 172

Query: 148 PN 149
             
Sbjct: 173 DF 174


>gi|254448397|ref|ZP_05061858.1| ribonuclease D [gamma proteobacterium HTCC5015]
 gi|198262010|gb|EDY86294.1| ribonuclease D [gamma proteobacterium HTCC5015]
          Length = 384

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 75/264 (28%), Gaps = 35/264 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E      L +           + L      D    +     D + P  L   L +
Sbjct: 26  LTLDTE-----FLREKTYY-----PQLCLIQIANHDLIACIDPLAIDDLTP--LYALLHD 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  V H +  ++ +L    +   P      T V A   G    +              
Sbjct: 74  ESIVKVLHAAVQDQEIL--YQSSQQPPKPVFDTQVAASLLGYGDQMG------------- 118

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK-- 181
               +L+ + C  +  +     +            +Y   DV   REI++ L+    +  
Sbjct: 119 --YAKLVEKICGVQLDKSQSRTDWSRRPLN-EKQIDYAADDVRHLREIYQHLKTELERLG 175

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS-RCLEK 238
             +      D   N + Y  D   A+   +     R K    L++L       +    + 
Sbjct: 176 RSDWLQKDFDDLANPQRYDPDPDSAYKRVKQYRRLRPKQLVILKALAEWREKRAMDKNKP 235

Query: 239 LKTWLFLETGLHLEDLTETTCQRV 262
            K     +  + L  +   T   +
Sbjct: 236 RKWIASDDLLMDLCKIQPKTVAEI 259


>gi|301060312|ref|ZP_07201175.1| putative ribonuclease D [delta proteobacterium NaphS2]
 gi|300445508|gb|EFK09410.1| putative ribonuclease D [delta proteobacterium NaphS2]
          Length = 381

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 8/123 (6%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           ET   +DL    +  Y E   V L  F      + +            L    ++  +  
Sbjct: 27  ETAIAVDLEADSMFHYQE--KVCLLQFSTPSKNILVDPLAVKD--LSPLAPIFKSFGICK 82

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLSSQKMEEG 126
           + H + ++   L    +  I ++    T + AR  GL    L ++ +  L ++ +K  + 
Sbjct: 83  IFHGADYDIRSL--YRDFKIEVNALFDTQIAARFLGLTDIGLASLLQGKLNITLKKKYQK 140

Query: 127 KEL 129
           K+ 
Sbjct: 141 KDW 143


>gi|116749133|ref|YP_845820.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698197|gb|ABK17385.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 973

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 31/197 (15%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-DHPVELWDCVHDPVMPQVLKEALEN 63
           F D ET+   D  + G     ++  ++  +     + P +      +  +P+++K   E 
Sbjct: 794 FFDLETQRLAD--EVGG---WQNKHLMKVSVAVLLETPPDTVHVFRENEVPELVKRLTEL 848

Query: 64  TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
               +V  N + F+  VLKA   +D+                    L+ + E L     +
Sbjct: 849 D--LVVGFNIAQFDYAVLKAYTTVDLNRLPTFD------------LLRDIHERLGF---R 891

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           +  G        + +  + +        +  W    EYCK DV +TR++F+         
Sbjct: 892 LSLGHLAEKTLGRPKISDGVQAVEW-YRQNRWDSLIEYCKMDVLLTRDLFRFALEN---- 946

Query: 183 QELWYLDQTINDRGYCV 199
              + L     +R   +
Sbjct: 947 --GYLLYTDRRNRLLRI 961


>gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 555

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNG---LPS 107
            + L   L   ++ IVAHN+ F+   L        +DIP   + CT +LAR+        
Sbjct: 293 LEQLAALLRKENLPIVAHNAKFDMVALRDAARAEKVDIPHITFACTYLLARALHPELPNY 352

Query: 108 ALKAVGEALK 117
            L  V ++  
Sbjct: 353 KLTTVAQSAG 362


>gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 247

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 56/255 (21%), Gaps = 66/255 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYAE---DVC-----VILFA 34
           M  + +D ET          +                   +Y +   D       V    
Sbjct: 1   MRQIILDTETTGLEWKKGNRVVEIGCVELLERRPSGRNFHRYLKPDCDFEAGAQEVTGLT 60

Query: 35  FGF-DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNL 86
             F  D P           +     E +      ++ HN+ F+   L             
Sbjct: 61  LEFLADKPAF-------EEIVDEFLEYI--DGAELIIHNAAFDLGFLDYELSRCGAHLGR 111

Query: 87  DIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSSQK-------------------MEE 125
            +     + TL+LA  R  G  ++L A+ + L + +                     +  
Sbjct: 112 IVDRCSVVDTLLLARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTS 171

Query: 126 GKELIARFCKGETHECLYDRNKPNHRE--AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           G+E I                                 +      R + +  +       
Sbjct: 172 GQEEIGFGDVEAASRGPVVTTVSFAPVSGERPRISAQPEELEAHARRLERLRKKAGRALW 231

Query: 184 ELWYLDQTINDRGYC 198
           + +            
Sbjct: 232 DQYEPLPEPEAELQP 246


>gi|170742646|ref|YP_001771301.1| ribonuclease D [Methylobacterium sp. 4-46]
 gi|168196920|gb|ACA18867.1| ribonuclease D [Methylobacterium sp. 4-46]
          Length = 394

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 47/165 (28%), Gaps = 18/165 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D    L D +   +        + +  V  V H++  +  ++       
Sbjct: 37  PKLCLIQIAAPDGTTALVDPLAPGIDLAPFFALMGDEGVLKVFHSARQDLEII--WLQGG 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +    +  T V A   G   +                  ++L+    K +  +     + 
Sbjct: 95  LLPQPFFDTQVAAMVCGYGDS---------------VSYEQLVNDVAKAKVDKSSRFTDW 139

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                +      Y   DVT   ++++ L           +LD+ +
Sbjct: 140 SRRPLSEAQLT-YALSDVTHLIKVYEALARQLLASDRGAWLDEEM 183


>gi|198424231|ref|XP_002122101.1| PREDICTED: similar to exosome component 10 [Ciona intestinalis]
          Length = 669

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 51/188 (27%), Gaps = 20/188 (10%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            + D +       +L +   N  +  V H +  +   L+  F   + +     T   AR 
Sbjct: 167 YIVDTLALRANLNILNQVFTNPKIVKVFHGADQDIKWLQRDFG--VYVVNLFDTGQAARV 224

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
             L  + + + +                   CK E+ +     +      + +   +Y +
Sbjct: 225 LELGLSREYLLKHY-----------------CKVESDKKYQKADWRERPLS-KDMLKYAQ 266

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            D      I+  ++    ++     L   +      + +     L          L +  
Sbjct: 267 EDTHYLLYIYDMMKLDLLEKAGGVGLMHKVIGNSRDICLLKYEKLIIDDTSHLKLLRKGA 326

Query: 223 ESLTYGLV 230
             +     
Sbjct: 327 GKIEDWEP 334


>gi|83942021|ref|ZP_00954483.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36]
 gi|83847841|gb|EAP85716.1| DNA polymerase III, epsilon subunit [Sulfitobacter sp. EE-36]
          Length = 228

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 41/182 (22%)

Query: 1   MATLFIDFETR-----SPIDLTKCGI-------------CKY--------AEDVCVILFA 34
           M  + +D ET      S   + + G               +Y        AE   V    
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAVELMGHVATGNTYHQYINPERSMPAEAFEVHGL- 59

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLD-IPI 90
                    L D      + Q   + + ++   +V HN+ F+   L        L  IP 
Sbjct: 60  -----GDDFLRDKPKFAQIGQDFLDFIGDS--KLVIHNAAFDIKFLNAELKWMGLPQIPW 112

Query: 91  HRWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNK 147
            + + TL +A  R  G P++L A+     + +      G  L +        E +  R  
Sbjct: 113 EQALDTLAIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILADVYLELIGGRQP 172

Query: 148 PN 149
             
Sbjct: 173 DF 174


>gi|255262197|ref|ZP_05341539.1| 3'-5' exonuclease [Thalassiobium sp. R2A62]
 gi|255104532|gb|EET47206.1| 3'-5' exonuclease [Thalassiobium sp. R2A62]
          Length = 203

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 54/206 (26%), Gaps = 37/206 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID ET         G+  + +   + +      D    +            L   L 
Sbjct: 19  VVAIDCET--------MGLNPHRD--RLCVIQMSGGDSNAHIIQVSKGQTEAPNLTAMLT 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEAL-KL 118
           N DV  + H   F+   ++  F          CT + ++          LK + + L  +
Sbjct: 69  NPDVLKLFHFGRFDIAAMQNAFGAVTAP--VYCTKIASKMVRTYTDRHGLKNLLQELIGV 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K ++  +                +   N +        Y   DV    ++   L   
Sbjct: 127 DISKQQQSSDW-------------GSQTLTNAQLD------YAASDVLYLHKLRTELNAR 167

Query: 179 S--SKEQELWYLDQTINDRGYCVDVA 202
                  E+             +D+ 
Sbjct: 168 LVREGRMEMAQACFDFLPMRAQLDLE 193


>gi|254454077|ref|ZP_05067514.1| ribonuclease D [Octadecabacter antarcticus 238]
 gi|198268483|gb|EDY92753.1| ribonuclease D [Octadecabacter antarcticus 238]
          Length = 395

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 73/273 (26%), Gaps = 46/273 (16%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMP 54
            + +D E     T                   + L    +         L D + + +  
Sbjct: 32  YVTVDTEFLRERTYYS---------------KLCLIQLAYMGEGGDDAVLVDPLAEGLDL 76

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L E  ++ +V  V H +  +  +     +  I       T V A   G        GE
Sbjct: 77  APLYELFKDENVVKVFHAARQDLEIF--FVDQGIIPKPLFDTQVAAMVCGF-------GE 127

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                       + L+ +  K    +     +             Y   DVT  R I++ 
Sbjct: 128 QAGY--------ETLVRKIAKDNVDKSSRFTDWSRRPLTDAQ-KTYALADVTHLRVIYEN 178

Query: 175 LEPLSSKEQELWYL---DQTINDR-GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           L     K     ++      +ND   Y  D   A    +       K    +  L     
Sbjct: 179 LSAELEKSGRKKWVAEEMAVLNDPATYQADPDNAWKRVKT-RTSSGKFLSIVRELARFRE 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
             ++     +  +F +  L     T+ T +  L
Sbjct: 238 LHAKNRNIPRNRVFKDDALVEIASTKPTSEDDL 270


>gi|195455204|ref|XP_002074609.1| GK23167 [Drosophila willistoni]
 gi|194170694|gb|EDW85595.1| GK23167 [Drosophila willistoni]
          Length = 1008

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 49/178 (27%), Gaps = 36/178 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            + +D E    I+L   G         + L   G       L+D    P M     LK  
Sbjct: 556 VISLDCE---GINLGLKG--------EITLIEIGTGRGEAFLFDVQSCPAMVSDGGLKTL 604

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-----------AL 109
           LE+  V  V H+   +   L       I +     T                      +L
Sbjct: 605 LEHEQVIKVIHDCRNDAANL--YLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISL 662

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            ++ E        +++  + I R  +    +    R              Y  GDV V
Sbjct: 663 NSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTR----------EMMLYAAGDVLV 710


>gi|328776419|ref|XP_003249163.1| PREDICTED: exosome component 10-like [Apis mellifera]
          Length = 1271

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 44/180 (24%), Gaps = 34/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E  S                   L     +D    L D +        L E  
Sbjct: 279 KEIAVDLEHHSYRSFQGIT----------CLMQISTEDKD-YLIDTLSLRSELHELNEIF 327

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
               +  V H +  +   L+   +L + +     T   A+   LP  +L  + +    + 
Sbjct: 328 TKPTILKVFHGADLDIQWLQR--DLSLYVVNMFDTHQAAKQLNLPYLSLAYLLKHYCNVD 385

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K                      R  P          +Y + D      I   L+   
Sbjct: 386 PDK-------------HFQMADWRIRPLP------EKLIKYAREDTHYLLYIKDMLKNAL 426


>gi|152978878|ref|YP_001344507.1| hypothetical protein Asuc_1210 [Actinobacillus succinogenes 130Z]
 gi|150840601|gb|ABR74572.1| conserved hypothetical protein [Actinobacillus succinogenes 130Z]
          Length = 254

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 60/227 (26%), Gaps = 69/227 (30%)

Query: 1   MATLFIDFET----------RSPIDLTKCGICKYAED----------------------V 28
           M  +FID ET              +L   G  K AE                        
Sbjct: 39  MR-IFIDIETIPTTNADYQNYVCENLKAPGNYKNAEAIEKWLEENKGEAVNKTALDGAFG 97

Query: 29  CVILFAFGFDDHPVELWDCVHDP------VMPQVLKEAL---ENTDV---TIVAHNS-YF 75
            +++     DD    L+             +       L    N        + HN   F
Sbjct: 98  EIVVIGVAIDDEEPVLFYREDWQSADRETDILTRFNNYLREHANKSTSAPQFIGHNITKF 157

Query: 76  -ERTVLKACFNLDIPIH------RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
            +R + +      +  +          T+      G   +L  + + L +  +   +G +
Sbjct: 158 DDRFIFQRSVVNGVKPYYTTSRQNTYDTMTEWAGYGGTVSLDKLCKVLDVEQKGDIDGSK 217

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           +      G                      EYC  DV   R+I+KR+
Sbjct: 218 VWQYVQDG----------------KISEVAEYCAKDVERVRQIYKRM 248


>gi|320034794|gb|EFW16737.1| exosome complex exonuclease Rrp6 [Coccidioides posadasii str.
           Silveira]
          Length = 772

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 42/178 (23%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              ++    V L      +    +   +      Q+L E  
Sbjct: 248 KEIAVDLE----------HHDAHSYHGLVCLMQISTREKDWIVDTLLPWREELQILNEVF 297

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H S  +   L+      + +     T   + +   P       ++LK    
Sbjct: 298 ADPRILKVLHGSSMDVIWLQRDLG--LYLVGLFDTYHASVALNYPK------KSLKFLLD 349

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           K    +                               +Y + D      I+  L    
Sbjct: 350 KFVNLEAEKQYQTADWRLRP-----------LLPGMFDYARSDTHYLLYIYDNLRNEL 396


>gi|303310683|ref|XP_003065353.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105015|gb|EER23208.1| 3'-5' exonuclease family protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 766

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 42/178 (23%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              ++    V L      +    +   +      Q+L E  
Sbjct: 248 KEIAVDLE----------HHDAHSYHGLVCLMQISTREKDWIVDTLLPWREELQILNEVF 297

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H S  +   L+      + +     T   + +   P       ++LK    
Sbjct: 298 ADPRILKVLHGSSMDVIWLQRDLG--LYLVGLFDTYHASVALNYPK------KSLKFLLD 349

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           K    +                               +Y + D      I+  L    
Sbjct: 350 KFVNLEAEKQYQTADWRLRP-----------LLPGMFDYARSDTHYLLYIYDNLRNEL 396


>gi|119195137|ref|XP_001248172.1| hypothetical protein CIMG_01943 [Coccidioides immitis RS]
          Length = 766

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 42/178 (23%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              ++    V L      +    +   +      Q+L E  
Sbjct: 248 KEIAVDLE----------HHDAHSYHGLVCLMQISTREKDWIVDTLLPWREELQILNEVF 297

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H S  +   L+      + +     T   + +   P       ++LK    
Sbjct: 298 ADPRILKVLHGSSMDVIWLQRDLG--LYLVGLFDTYHASVALNYPK------KSLKFLLD 349

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           K    +                               +Y + D      I+  L    
Sbjct: 350 KFVNLEAEKQYQTADWRLRP-----------LLPGMFDYARSDTHYLLYIYDNLRNEL 396


>gi|326388611|ref|ZP_08210204.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206862|gb|EGD57686.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370]
          Length = 205

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 43/181 (23%), Gaps = 34/181 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEAL 61
            + +D ET   +               + +           L             LK  L
Sbjct: 19  IVAVDTETMGLVTTRD----------RLCVVQISDGKGDEHLVRFAPGSTYDAPNLKAVL 68

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKL 118
            + +   + H + F+   +       +      CT + ++          LK +   L  
Sbjct: 69  ADPERLKLFHFARFDLAAIHYYLG--VMATPVFCTKIASKLVRTYTDRHGLKELVREL-- 124

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                  GKE      K +        N  + +       EY   DV         L   
Sbjct: 125 ------AGKE----ISKQQQSSDWGGANLSDAQ------LEYAASDVRYLHTCHAVLVDR 168

Query: 179 S 179
            
Sbjct: 169 L 169


>gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
 gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
           sp. B510]
          Length = 702

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 39/150 (26%), Gaps = 44/150 (29%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDH------------------PVE 43
            +  D ET         G+   A D  ++  A                         P E
Sbjct: 509 YVVFDTETT--------GLSPSAGD-EIVQIAAVRIVGGRILTGETFNMLVDPKRPIPPE 559

Query: 44  LWDCV-------HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIH 91
                               +     +  +   +VAHN+ F+   LK       +     
Sbjct: 560 SIPFHGITDAMVAGKPTIDTVLPQFRSFVSGAVLVAHNAAFDLKFLKMKERAAGVTFD-C 618

Query: 92  RWICTLVLARSN---GLPSALKAVGEALKL 118
             + T++L+R          L  + + L +
Sbjct: 619 PVLDTMLLSRMLLGNDGDHTLDGIAQRLGI 648


>gi|154278361|ref|XP_001539994.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413579|gb|EDN08962.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 807

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 43/180 (23%), Gaps = 29/180 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E              ++    V L      D    +          QVL E   
Sbjct: 250 EIAIDLE----------HHDAHSYHGLVCLMQLSTRDKDWIVDTLKPWREELQVLNEVFS 299

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V H S  +   L+    L I       T   A +   P       ++LK   +K
Sbjct: 300 DPKILKVLHGSTMDVIWLQRDLGLYI--VGLFDTYHAAVALNYPK------KSLKFLLEK 351

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               +                               +Y + D      I+  +     + 
Sbjct: 352 FVNFQAEKKYQIADWRLRP-----------LLPGMFDYARSDTHYLLYIYDHIRNDLIEH 400


>gi|311347844|gb|ADP90867.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 846

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 847  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 900

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 901  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP 960

Query: 447  AFQKMASTT-----GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +++                A  +   +    W    +   W+                
Sbjct: 961  FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI 1020

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            + + ++K  R+        W +     E+  + G       + +            L   
Sbjct: 1021 SLQDLRKVQRETAR--KSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCC 1078

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +    S           ++ +                  +VQ+ + D   ++   M    
Sbjct: 1079 I----SRALEPSAVQEEFMTSR--------------VNWVVQSSAVDYLHLMLVAMKWLF 1120

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1121 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1163


>gi|262368015|pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
            Holoenzyme
 gi|262368018|pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
            Holoenzyme
          Length = 1172

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 726  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 779

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 780  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 833

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 834  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP 893

Query: 447  AFQKMASTT-----GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +++                A  +   +    W    +   W+                
Sbjct: 894  FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI 953

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            + + ++K  R+        W +     E+  + G       + +            L   
Sbjct: 954  SLQDLRKVQRETAR--KSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCC 1011

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +    S           ++ +                  +VQ+ + D   ++   M    
Sbjct: 1012 I----SRALEPSAVQEEFMTSR--------------VNWVVQSSAVDYLHLMLVAMKWLF 1053

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1054 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1096


>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 34/148 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLK- 58
           M  +  D ET            +  E   V L  +   +   +++ C +     P+ LK 
Sbjct: 7   MRKIVFDIETTGLDSKN----DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKL 62

Query: 59  -----EALENT-----------------DVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                E L++                  +   +AHN+ F+       L+      +   R
Sbjct: 63  HGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSR 122

Query: 93  WICTLVLARSNGLPSA--LKAVGEALKL 118
            I TL +AR     S   L ++ +   +
Sbjct: 123 IIDTLSIARRKHPSSRNDLNSLCKRYGI 150


>gi|158255998|dbj|BAF83970.1| unnamed protein product [Homo sapiens]
          Length = 1239

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 846

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 847  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 900

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 901  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP 960

Query: 447  AFQKMASTT-----GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +++                A  +   +    W    +   W+                
Sbjct: 961  FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI 1020

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            + + ++K  R+        W +     E+  + G       + +            L   
Sbjct: 1021 SLQDLRKVQRETAR--KSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCC 1078

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +    S           ++ +                  +VQ+ + D   ++   M    
Sbjct: 1079 I----SRALEPSAVQEEFMTSR--------------VNWVVQSSAVDYLHLMLVAMKWLF 1120

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1121 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1163


>gi|114658821|ref|XP_523149.2| PREDICTED: DNA polymerase subunit gamma-1 [Pan troglodytes]
          Length = 1236

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 790  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 843

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 844  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 897

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 898  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP 957

Query: 447  AFQKMASTT-----GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +++                A  +   +    W    +   W+                
Sbjct: 958  FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI 1017

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            + + ++K  R+        W +     E+  + G       + +            L   
Sbjct: 1018 SLQDLRKVQRETAR--KSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCC 1075

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +    S           ++ +                  +VQ+ + D   ++   M    
Sbjct: 1076 I----SRALEPSAVQEEFMTSR--------------VNWVVQSSAVDYLHLMLVAMKWLF 1117

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1118 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1160


>gi|21779923|gb|AAM77583.1|AF497906_1 polymerase (DNA directed), gamma [Homo sapiens]
          Length = 1240

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 794  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 847

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 848  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 901

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 902  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP 961

Query: 447  AFQKMASTT-----GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +++                A  +   +    W    +   W+                
Sbjct: 962  FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI 1021

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            + + ++K  R+        W +     E+  + G       + +            L   
Sbjct: 1022 SLQDLRKVQRETAR--KSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCC 1079

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +    S           ++ +                  +VQ+ + D   ++   M    
Sbjct: 1080 I----SRALEPSAVQEEFMTSR--------------VNWVVQSSAVDYLHLMLVAMKWLF 1121

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1122 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1164


>gi|4505937|ref|NP_002684.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|187171277|ref|NP_001119603.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|1706507|sp|P54098|DPOG1_HUMAN RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|1399956|gb|AAC50712.1| DNA polymerase gamma [Homo sapiens]
 gi|1438508|emb|CAA66719.1| DNA polymerase gamma [Homo sapiens]
 gi|27502689|gb|AAH42571.1| Polymerase (DNA directed), gamma [Homo sapiens]
 gi|29791648|gb|AAH50559.1| POLG protein [Homo sapiens]
 gi|119622450|gb|EAX02045.1| polymerase (DNA directed), gamma, isoform CRA_a [Homo sapiens]
 gi|119622452|gb|EAX02047.1| polymerase (DNA directed), gamma, isoform CRA_a [Homo sapiens]
 gi|311347818|gb|ADP90854.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347820|gb|ADP90855.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347822|gb|ADP90856.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347824|gb|ADP90857.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347826|gb|ADP90858.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347828|gb|ADP90859.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347830|gb|ADP90860.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347832|gb|ADP90861.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347834|gb|ADP90862.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347836|gb|ADP90863.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347838|gb|ADP90864.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347840|gb|ADP90865.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347842|gb|ADP90866.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347846|gb|ADP90868.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347848|gb|ADP90869.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347850|gb|ADP90870.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347854|gb|ADP90872.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347856|gb|ADP90873.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347858|gb|ADP90874.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347860|gb|ADP90875.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347862|gb|ADP90876.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347864|gb|ADP90877.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347866|gb|ADP90878.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347868|gb|ADP90879.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347870|gb|ADP90880.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347872|gb|ADP90881.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347874|gb|ADP90882.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347876|gb|ADP90883.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347880|gb|ADP90885.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347882|gb|ADP90886.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347884|gb|ADP90887.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347886|gb|ADP90888.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347888|gb|ADP90889.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347890|gb|ADP90890.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347892|gb|ADP90891.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347894|gb|ADP90892.1| DNA polymerase subunit gamma-1 [Homo sapiens]
 gi|311347896|gb|ADP90893.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 846

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 847  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 900

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 901  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP 960

Query: 447  AFQKMASTT-----GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +++                A  +   +    W    +   W+                
Sbjct: 961  FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI 1020

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            + + ++K  R+        W +     E+  + G       + +            L   
Sbjct: 1021 SLQDLRKVQRETAR--KSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCC 1078

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +    S           ++ +                  +VQ+ + D   ++   M    
Sbjct: 1079 I----SRALEPSAVQEEFMTSR--------------VNWVVQSSAVDYLHLMLVAMKWLF 1120

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1121 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1163


>gi|1644239|dbj|BAA12223.1| mitochondrial DNA polymerase gamma [Homo sapiens]
          Length = 1241

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 795  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 848

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 849  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 902

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 903  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP 962

Query: 447  AFQKMASTT-----GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +++                A  +   +    W    +   W+                
Sbjct: 963  FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI 1022

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            + + ++K  R+        W +     E+  + G       + +            L   
Sbjct: 1023 SLQDLRKVQRETAR--KSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCC 1080

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +    S           ++ +                  +VQ+ + D   ++   M    
Sbjct: 1081 I----SRALEPSAVQEEFMTSR--------------VNWVVQSSAVDYLHLMLVAMKWLF 1122

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1123 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1165


>gi|325292526|ref|YP_004278390.1| Ribonuclease D [Agrobacterium sp. H13-3]
 gi|325060379|gb|ADY64070.1| Ribonuclease D [Agrobacterium sp. H13-3]
          Length = 386

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 61/234 (26%), Gaps = 26/234 (11%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E           + +      + L         V +        +   L E + N
Sbjct: 21  ITIDTE----------FLRETTFWPELCLVQMASPTLEVLVDPLAKGLDLT-PLFELMAN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            DV  V H +  +  ++       +  H    T V A   G   ++       ++ +   
Sbjct: 70  PDVVKVFHAARQDIEII-YHLG-GLIPHPIFDTQVAAMVCGFGDSISYDQLVQRIKN--- 124

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                   +  K         R     +  + L       DV +  +     E  S    
Sbjct: 125 -------VQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQLEREGRSLWLT 177

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           E   + ++        D A     +++    +      L+ +       +R   
Sbjct: 178 EEMDILESRETYDMHPDDAWLRLKSRL---RKPTELAILKFVAAWREREARSRN 228


>gi|254512186|ref|ZP_05124253.1| ribonuclease D [Rhodobacteraceae bacterium KLH11]
 gi|221535897|gb|EEE38885.1| ribonuclease D [Rhodobacteraceae bacterium KLH11]
          Length = 385

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 55/199 (27%), Gaps = 41/199 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMP 54
            + +D E     T                   + L         D    L D + + +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAVPAEGDDSAVLVDPLAEGMSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L E   N  V  V H +  +  +     +  +       T V A   G        GE
Sbjct: 67  DPLYELFRNESVVKVFHAARQDLEIF--WVDAGVFPTPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ + CK    +     +             Y   DVT  R+I++ 
Sbjct: 118 QVGY--------ETLVRKICKEGVDKTSRFTDWSRRPL-TEAQKSYALADVTHLRKIYEY 168

Query: 175 LEPLSSKEQELWYLDQTIN 193
           L     K +   ++ + + 
Sbjct: 169 LAGELKKTKRDHWVAEELR 187


>gi|114553922|ref|XP_001136272.1| PREDICTED: exosome component 10 isoform 1 [Pan troglodytes]
          Length = 768

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 37/200 (18%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 336 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 393 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 448

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                        R  P           Y + D      I+ +             L+  
Sbjct: 449 -----------RIRPLP------EEMLSYARDDTHYLLYIYDK-----------MRLEMW 480

Query: 192 INDRGYCVDVALAHTLNQIV 211
               G  V + +    ++ +
Sbjct: 481 ERGNGQPVQLQVVWQRSRDI 500


>gi|439149|gb|AAA64535.1| DNA polymerase [Bacillus phage SPO1]
          Length = 91

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 22/109 (20%)

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +A+      ++ L   ++ D  +  +    G + TGR S      Q  PR         
Sbjct: 3   RKANHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRK-------- 53

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLAGIEAR 387
                       +   L   +  ++    +   +G  +V  D + +E R
Sbjct: 54  -----------VNTPTLFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELR 91


>gi|94496604|ref|ZP_01303180.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
 gi|94423964|gb|EAT08989.1| DNA polymerase III, epsilon subunit [Sphingomonas sp. SKA58]
          Length = 230

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 62/198 (31%), Gaps = 38/198 (19%)

Query: 1   MATLFIDFETR-----SPIDLTKCGI--------------CKYAEDVCVILFAFGFDDHP 41
           M  +  D ET      S   + + G                 Y  +  +   AF      
Sbjct: 1   MREIIFDTETTGFDPASGDRMVEIGCIELVNRVPTGRTFHAYYHPERDMPAAAFAVHGLS 60

Query: 42  VELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWI 94
            +            +   L + LE++   +VAHN+ F+   L      C +  + +HR I
Sbjct: 61  ADFLAKHPVFSLGAL--ELLDFLEDS--PLVAHNARFDFGFLNHELTLCGHPQVGMHRMI 116

Query: 95  CTLVLARSNGLP--SALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
            T+ +AR        +L A+     +  S +++ G  L A        E    R      
Sbjct: 117 DTVAIARQLHPGAKHSLDALCTRYGIDRSHRVKHGALLDAELLAQLYIELTGGRQ----- 171

Query: 152 EAWRLFGEYCKGDVTVTR 169
               L  E  K  V V  
Sbjct: 172 IGLGLAQEEAKEIVRVEL 189


>gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
 gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
          Length = 233

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 53/174 (30%), Gaps = 31/174 (17%)

Query: 1   MATLFIDFETRSPID----LTKCGICKYAEDV----CVILFAFGFD-DHPVELWDCVHDP 51
           M  +  D ET    +    + + G  +          + LF    + D      D +   
Sbjct: 1   MREIVFDTETTGLDNKVDRIIEIGCVELENQFPTGRSLHLF---INPDGRAVHPDALAVH 57

Query: 52  VMPQVL---KEALEN---------TDVTIVAHNSYFERTVLKACFNL----DIPIHRWIC 95
            +       K    +              VAHN+ F+   L A F+      +     I 
Sbjct: 58  GITDQFLADKPVFADLADEIAAFFDGAHYVAHNANFDMGFLNAEFDRIGLPPVDPGLVID 117

Query: 96  TLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           TL LAR      P++L A+     + +  + + G  L A        E    R 
Sbjct: 118 TLALARRRHPMGPNSLDALCRRYGIDNAHRTKHGALLDAELLTDVYIEMRGGRQ 171


>gi|326473059|gb|EGD97068.1| hypothetical protein TESG_04488 [Trichophyton tonsurans CBS 112818]
          Length = 898

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 47/179 (26%), Gaps = 33/179 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E              Y     V L      +    +          QVL E   
Sbjct: 254 EIAVDLE--------HHDSHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFA 303

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK-AVGEALKLSS 120
           +  +  V H S  +   L+      + +     T   A +  LP  +LK  + E +   +
Sbjct: 304 DPSIIKVLHGSSMDVIWLQRDLG--LYLVGLFDTFHAASALQLPKKSLKFLLHEYVGFDA 361

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K  +  +                R             +Y + D      IF RL    
Sbjct: 362 DKQYQTADW-------------RIRPL------LAGMLDYARSDTHFLLYIFDRLRNQL 401


>gi|320583859|gb|EFW98072.1| hypothetical protein HPODL_0702 [Pichia angusta DL-1]
          Length = 729

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 47/186 (25%), Gaps = 43/186 (23%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ- 55
             + +D E     T                     L     D     L D +   + P  
Sbjct: 239 KVIAVDLEHHDYRTY---------------HGITCLMQLTTDTKKDYLIDPLSPELRPHL 283

Query: 56  -VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVG 113
             L     + ++  V H ++ +   L+      + +     T   +R  GL   +L  + 
Sbjct: 284 VNLNVIFTDPNIVKVFHGAFMDIIWLQRDLG--LYVVSLFDTYHASRELGLGRHSLAHLL 341

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E       K +  K+      +                        Y K D     E+F 
Sbjct: 342 ETY----VKFKTSKKWQLADWRMRPLNS--------------EMKNYAKADTHFLIEVFY 383

Query: 174 RLEPLS 179
           ++    
Sbjct: 384 KMHSEL 389


>gi|312218247|emb|CBX98193.1| similar to exosome complex exonuclease Rrp6 [Leptosphaeria
           maculans]
          Length = 783

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 43/178 (24%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y     V L      +    +          + L E  
Sbjct: 235 KEIAVDLE--------HHDNRSYI--GIVSLMQISTRNQDWIVDTLKPWRRKLECLNEVF 284

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N D+  V H +Y +   L+      + +     T   ARS G P      G +L     
Sbjct: 285 ANPDIIKVLHGAYMDIMWLQRDLG--LYVVGLFDTYHAARSLGYP------GASLAYLLD 336

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           +    K              L                EY + D      IF  +    
Sbjct: 337 RFIGFKAQKQYQIADWRIRPLGKELF-----------EYARADTHFLLYIFDNMRNEL 383


>gi|194383644|dbj|BAG59180.1| unnamed protein product [Homo sapiens]
          Length = 679

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 37/200 (18%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                        R  P           Y + D      I+ +             L+  
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDK-----------MRLEMW 456

Query: 192 INDRGYCVDVALAHTLNQIV 211
               G  V + +    ++ +
Sbjct: 457 ERGNGQPVQLQVVWQRSRDI 476


>gi|114553924|ref|XP_001136359.1| PREDICTED: exosome component 10 isoform 2 [Pan troglodytes]
          Length = 811

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 37/200 (18%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 336 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 393 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 448

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                        R  P           Y + D      I+ +             L+  
Sbjct: 449 -----------RIRPLP------EEMLSYARDDTHYLLYIYDK-----------MRLEMW 480

Query: 192 INDRGYCVDVALAHTLNQIV 211
               G  V + +    ++ +
Sbjct: 481 ERGNGQPVQLQVVWQRSRDI 500


>gi|47934816|gb|AAT39846.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 126

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 27/124 (21%)

Query: 274 IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPS 333
            +     +   +    ++++ +     DGR+ G +   GA  TGR +        +P  S
Sbjct: 28  AKTIYEYLMLQK-RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVS 84

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA 393
                                          RS     EG KL+  D +G+E R+LA   
Sbjct: 85  AP------------------------YGKECRSFWCVPEGHKLIGCDASGLELRMLAHYM 120

Query: 394 GEQW 397
            ++ 
Sbjct: 121 RDER 124


>gi|86138715|ref|ZP_01057288.1| ribonuclease D [Roseobacter sp. MED193]
 gi|85824775|gb|EAQ44977.1| ribonuclease D [Roseobacter sp. MED193]
          Length = 385

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 41/194 (21%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMP 54
            + +D E     T                   + L    F    ++   L D + + +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQIAFSGDGENDAVLVDPLSEGLSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L     +  V  V H +  +  +     + ++       T V A   G       VG 
Sbjct: 67  EPLYALFRDESVVKVFHAARQDLEIF--WVDANVFPKPLFDTQVAAMVCGFG---DQVG- 120

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                       + L+ +  K    +     +      +      Y   DVT  R +++ 
Sbjct: 121 -----------YETLVRKIVKEGVDKSSRFTDWSRRPLS-EAQQAYALADVTHLRRVYEY 168

Query: 175 LEPLSSKEQELWYL 188
           L     +     ++
Sbjct: 169 LAADLERSGRSHWV 182


>gi|15963758|ref|NP_384111.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021]
 gi|307302561|ref|ZP_07582318.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
 gi|307316108|ref|ZP_07595552.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|15072933|emb|CAC41392.1| Probable DNA polymerase III, epsilon chain [Sinorhizobium meliloti
           1021]
 gi|306897948|gb|EFN28690.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
 gi|306903231|gb|EFN33821.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
          Length = 242

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 29/173 (16%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVILFAFGFDDHPVELWDCV---HD-- 50
           M  +  D ET    +     +   GI    +           +    ++       H   
Sbjct: 1   MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGERKVHPEALAVHGIT 60

Query: 51  ----------PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH---RWICT 96
                       + Q + +   +     VAHN+ F+   +      L +P     R I T
Sbjct: 61  DEFLKDKPPFADVAQEIVDFFGDAR--WVAHNATFDIGFINAEFERLGLPPIGSDRVIDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           L LAR      P++L A+     + +  +   G  L +        E +  R 
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGVDNSHRTRHGALLDSELLAEVYIEMIGGRQ 171


>gi|326536842|ref|YP_004301274.1| hypothetical protein 65p438 [Aeromonas phage 65]
 gi|312263188|gb|ADQ53444.1| conserved hypothetical protein [Aeromonas phage 65]
          Length = 318

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 32/201 (15%)

Query: 1   MAT----LFIDFET------RSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWD--- 46
           M T    L +D ET         +  T  G+    +D  ++ FA  + D   +   D   
Sbjct: 55  MKTGPRVLVLDIETAPVLAHVWRLFKTNVGLNMIDQDWYMLSFAAKWFDSDEIIYMDQRN 114

Query: 47  ---CVHDPVMPQVLKEALENTDVTIVAHNSY-FER-TVLKACFNLDIPI---HRWICTL- 97
                 D  M +VL E L+  D+ +   N   F+   +       ++      + I TL 
Sbjct: 115 AKNVEDDSDMLKVLWELLDEADIVLH-QNGKRFDIPKIRARMIFHNMKPFSGVKHIDTLE 173

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           +  R+ G  S         KL         +             L+      + EAW+  
Sbjct: 174 IAKRTFGFTSN--------KLEYMTDTLCSDTKKSKHAKFPGFELWKECLAGNMEAWQEM 225

Query: 158 GEYCKGDVTVTREIFKRLEPL 178
            +Y  GD+   +E++ +L P 
Sbjct: 226 EDYNIGDIVSLQELYVKLSPW 246


>gi|325291458|ref|YP_004277322.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
 gi|325059311|gb|ADY63002.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
          Length = 233

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 46/173 (26%), Gaps = 29/173 (16%)

Query: 1   MATLFIDFETRSPIDL-------------------TKCGICKYAEDVCVILFAFGFDD-H 40
           M  +  D ET                             I    ED  V   A       
Sbjct: 1   MREIIFDTETTGLESKLDRVIEIGGIELNNHFPTGRTLHIYINPEDRKVHPDALAVHGIT 60

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICT 96
              L D      +   ++E  E      VAHN+ F+               +       T
Sbjct: 61  DDFLKDKPKFAEVVDEIREFFE--GARWVAHNATFDMGFINAEFARLGIAPVSSELVTDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           L LAR      P++L A+     + +  + + G  L +        E +  R 
Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQ 171


>gi|26452498|dbj|BAC43334.1| putative nucleolar protein [Arabidopsis thaliana]
          Length = 578

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 62/235 (26%), Gaps = 35/235 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+E  ++     V H +  +   L+  F + +       T   +R   L           
Sbjct: 325 LREIFKDPKKKKVMHGADRDIIWLQRDFGIYV--CNLFDTGQASRVLNLERN-------- 374

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + L+  FC    ++   + +             Y + D      I+  ++
Sbjct: 375 --------SLEFLLQHFCGVTANKEYQNADWRIRPLP-EEMTRYAREDTHYLLYIYDLIK 425

Query: 177 ---------------PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
                          PL    +  + +   + ++    + +  H                
Sbjct: 426 LELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQLAI 485

Query: 222 LESLTYGLVSSSRCLEKLKTW-LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
           +  L       +R  ++   + L  +  L +      +  ++    K   P   +
Sbjct: 486 VAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIER 540


>gi|251780447|ref|ZP_04823367.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243084762|gb|EES50652.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 204

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 35/127 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV------------------------CVILFAFG 36
           M  LF D ET S    + C +     D                          +  F+  
Sbjct: 1   MKLLFFDTETTSIKPGSICQLSYITVDASSKPQITTGKNFFFTVDEMNPSAQEIHGFSLE 60

Query: 37  --FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIH 91
             ++    + +    + ++P+  K+ +E     ++ HN  F+   LK        D    
Sbjct: 61  KLYELSDGQYF----EDLVPEFFKDFIEAD--FLIGHNVNFDIRFLKHELSLLGEDFLPK 114

Query: 92  RWICTLV 98
              CT++
Sbjct: 115 HSFCTMI 121


>gi|123967004|ref|YP_001012085.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515]
 gi|123201370|gb|ABM72978.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9515]
          Length = 213

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 30/178 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D E          G+    +   + L     + H         +      +K+  E
Sbjct: 30  YLAVDTE--------AMGLIHGRD--RLCLIQISNEFHLTSCIKIELNNSDSPHIKKLFE 79

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  + H + F+   LK   NL+I  +   CT + ++          +          
Sbjct: 80  DNKIMKIFHYARFDVAALK--CNLNINTNNIFCTKIASK----------LARTYTHKHG- 126

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV----TVTREIFKRLE 176
               KELI      E  +     +  +  +      +Y   DV       R++   LE
Sbjct: 127 ---LKELIHELIGIELDKSSQSSDWGSCEDLSDKQIDYAANDVKYLIEAMRKLRIILE 181


>gi|195119318|ref|XP_002004178.1| GI19770 [Drosophila mojavensis]
 gi|193909246|gb|EDW08113.1| GI19770 [Drosophila mojavensis]
          Length = 991

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 76/302 (25%), Gaps = 59/302 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEAL 61
           + +D E    I+L   G         + L   G       L+D    P M     LK  L
Sbjct: 540 ISLDCE---GINLGIKG--------EITLIEIGTARGEAFLFDVQSCPAMVSDGGLKTLL 588

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-----------ALK 110
           E+  V  V H+   +   L       I +     T                      +L 
Sbjct: 589 EHDQVIKVIHDCRNDAVNL--YLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLN 646

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT-- 168
           ++ E        +++  + I R  +    +    R              Y  GDV V   
Sbjct: 647 SLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTR----------EMMLYAAGDVLVLIH 696

Query: 169 REIFKRLEPLSSKEQELW-------YLDQTINDRGYCVDVA--LAHTLNQIVDVERTKLD 219
            ++F  L      E            +   I      +        T    +  +  +  
Sbjct: 697 EQLFGTLAQQIKPENRQLFSELCTEQILMQIKPNEVKIRKKQRKVSTEVSDLKQKLAQTS 756

Query: 220 QEL------------ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
           + +              LT       +   K+   L         +  ++  +    +N+
Sbjct: 757 KSIVLSNREIRLLRYMDLTEEEKERLKGYYKVAKKLEKMESAGNPNKDQSDSEDEAEANE 816

Query: 268 KL 269
             
Sbjct: 817 ND 818


>gi|163732957|ref|ZP_02140401.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149]
 gi|161393492|gb|EDQ17817.1| DNA polymerase III, epsilon subunit [Roseobacter litoralis Och 149]
          Length = 228

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 52/178 (29%), Gaps = 33/178 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
           M  + +D ET            +  E   V L                 + +MP      
Sbjct: 1   MREIVLDTETTGFDP---ESGDRIVEIGAVELMGH-VATGKTYHQYINPERMMPDEAFQV 56

Query: 59  -----EALENT---------------DVTIVAHNSYFERTVLK---ACFNLD-IPIHRWI 94
                E L +                D  +V HN+ F+   L       NL  IP  + I
Sbjct: 57  HGLGDEFLRDKPKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELKWMNLPQIPWEQAI 116

Query: 95  CTLVLA--RSNGLPSALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPN 149
            TL +A  R  G P++L A+     + +      G  L +        E +  R    
Sbjct: 117 DTLAIARKRFPGSPASLDALCRRFGIDNASRTLHGALLDSEILAEVYLELIGGRQPDF 174


>gi|121713882|ref|XP_001274552.1| DNA polymerase gamma [Aspergillus clavatus NRRL 1]
 gi|119402705|gb|EAW13126.1| DNA polymerase gamma [Aspergillus clavatus NRRL 1]
          Length = 1134

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 84/327 (25%), Gaps = 69/327 (21%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ + A  G   V AD+   E
Sbjct: 670 PQIIPMGTITRRAVENTWLTASNAKAN------RVGSELKAMIKAPPGYVFVGADVDSQE 723

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD----QRAIGKVMELALGY 441
              +A + G+                  +++        T       R   KV      Y
Sbjct: 724 L-WIASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTAHILGISRNDAKVFNYGRIY 782

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +++        +   +E + A    R + EN       + F+  
Sbjct: 783 GAGLKFAATLLRQFNPSMSEKETQEVASKLYKETKGARTSRRILSENPFWRGGTESFVFN 842

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +   +                      A  RR +        + N  + 
Sbjct: 843 KLEEFAEQERPRTPAL----------------GAGITEALMRRFINKGSFMTSRINWAIQ 886

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM---MNAT 618
                 L                                         L   M   +   
Sbjct: 887 SSGVDYLHL---------------------------------------LIIAMDYIIRRY 907

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNAS 645
             G  + +TVHDEI     + D++ A+
Sbjct: 908 NIGARLAITVHDEIRYLVKEEDKYRAA 934


>gi|83594940|ref|YP_428692.1| DNA polymerase III, subunit epsilon [Rhodospirillum rubrum ATCC
           11170]
 gi|83577854|gb|ABC24405.1| DNA polymerase III, epsilon subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 230

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 42/164 (25%)

Query: 1   MATLFIDFETRSPID-----LTKCG-------------ICKYA--------EDVCVILFA 34
           M  + +D ET          L + G             +  Y         E   V   +
Sbjct: 1   MREIVLDTETTGLDPATGDRLVEIGCIELINHMPSGNDLHLYVNPERDMPPEAFRVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEAL-ENTDVTIVAHNSYFERTV----LKACFNLDIP 89
                    L D      +       + E+    ++ HN+ F+       L       +P
Sbjct: 61  ------EAFLADKPLFAEVVDEFLAFIGED---RLIIHNAAFDMKFLNAELARLKRPPLP 111

Query: 90  IHRWICT--LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           + R + T  +  AR  G  ++L A+     + +    +   LI 
Sbjct: 112 MSRALDTLRMAQARFPGAQASLDALCRRFGVDTSSRTKHGALID 155


>gi|171679581|ref|XP_001904737.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939416|emb|CAP64644.1| unnamed protein product [Podospora anserina S mat+]
          Length = 628

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 59/225 (26%), Gaps = 36/225 (16%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVC-----VILFAFGFDDHPVEL---WDCVHDPVMPQV 56
           ++D E+  PI +    +     D       + L      +    +       H     +V
Sbjct: 16  YLDVESTKPIWVDTLRLIWTHHDFRTYTGLLSLMQISTREKDWIVDTLVPWRHR---LEV 72

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L E   +  +  V H ++ +   L+      + +     T   +   G      ++    
Sbjct: 73  LNEVFADPGIVKVFHGAFMDVVWLQRDLG--VYVVGLFDTHHASTVLGYGGG--SLAF-- 126

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                       L+ +F   E  +     +             Y + D      ++  + 
Sbjct: 127 ------------LLKKFVGFEADKRWQLADWRIRPLP-AEMLYYARADTHYLLYVYDMIR 173

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
              +      + D      G  ++  +A +    +         E
Sbjct: 174 NDLAAAAHTVHPD------GKPIERVIAKSKKTALSRYENPAFDE 212


>gi|307198047|gb|EFN79100.1| Exonuclease 3'-5' domain-like-containing protein 1 [Harpegnathos
           saltator]
          Length = 831

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 79/285 (27%), Gaps = 41/285 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            +  D E    I+L   G         + L   G       ++D    P + Q   L++ 
Sbjct: 420 VISFDCE---GINLGVKG--------QLTLVQIGTMSGQAYVFDLFTCPSLVQAGGLQKL 468

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-----------PSAL 109
           LE+ +V  V H+   +   L   F   I +     T                       L
Sbjct: 469 LEHKNVVKVIHDCRNDSVNLYNQF--KIMLTNVFDTQAAHAVLQFQETGKPVYKVKNVNL 526

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVT-V 167
             + +        ++E           +         +   R    R    Y   DV  +
Sbjct: 527 NTLCDHYGAPCNPLKE-----------QLKNIYRKDQRYWSRRPMTRDMLIYASSDVLSL 575

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI--VDVERTKLDQELESL 225
             +++  +  L   E +  + +         +  A      +   V+ E   L + +E  
Sbjct: 576 VPQVYNAMSRLIKPEIQGLFAELCEEQIQMHIRPAEVKARKKQRKVETEVADLKKRMEEA 635

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
           T   +  S    +L  +L L      +        + L   + + 
Sbjct: 636 TSKNIVLSNREIRLLRYLDLTEDEKEKLKGSYKVAKKLEKLENMG 680


>gi|254419933|ref|ZP_05033657.1| ribonuclease D [Brevundimonas sp. BAL3]
 gi|196186110|gb|EDX81086.1| ribonuclease D [Brevundimonas sp. BAL3]
          Length = 383

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 72/276 (26%), Gaps = 49/276 (17%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L           + D + + +  +   
Sbjct: 23  ITVDTEFMRETTYW---------------PRLCLIQAA-SADHAGIIDPMAEGLDLEPFL 66

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L +  +  V H    +  +      L         T V A + G              
Sbjct: 67  DLLRDPKIIKVFHACRQDVEIFVR---LGAMPRPMFDTQVAAMAAGFG------------ 111

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              +      L+ +  + E  +     +      +      Y  GDVT    ++ +L   
Sbjct: 112 ---EQVAYDSLVRQMLRVELDKGSRFTDWARRPLSDSQLV-YALGDVTHLAALYPKLRDR 167

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY------GLVSS 232
             KE  L ++   +      +D AL  T  +             + L            +
Sbjct: 168 LKKEGRLDWVMSEME---SLIDPALYDTNPENAWKRLKPKKFSAKYLAAFKAVAVWRERA 224

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           ++  ++ +  +  + G+        T     +  + 
Sbjct: 225 AQERDQPRGRILKDEGIDEVAQQTPTDPEAFNRLRS 260


>gi|114553916|ref|XP_514382.2| PREDICTED: exosome component 10 isoform 5 [Pan troglodytes]
          Length = 885

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 37/200 (18%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                        R  P           Y + D      I+ +             L+  
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDK-----------MRLEMW 456

Query: 192 INDRGYCVDVALAHTLNQIV 211
               G  V + +    ++ +
Sbjct: 457 ERGNGQPVQLQVVWQRSRDI 476


>gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C]
 gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
 gi|122425898|sp|Q1RJM1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon
 gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C]
 gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
          Length = 229

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 62/227 (27%), Gaps = 42/227 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCV---------ILFAFGFDDH-----PVELWDC 47
             + +D ET         G  +  E   +           F F  +              
Sbjct: 5   REIILDTETTGLDP---KGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPFEAYRIHG 61

Query: 48  VHDP---------VMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFNLDIPIH 91
           +             +     E + ++ +  V HN+ F+          LK      + + 
Sbjct: 62  ISGEFLKDKPLFHTIADDFLEFIADSKL--VIHNAPFDVKFLNHELSLLKRAEIKLLELE 119

Query: 92  RWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKP 148
             I TLV+ARS       +L A+ +  K+ +   +    L       E   E    R   
Sbjct: 120 HAIDTLVMARSMFPGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTGGRQSA 179

Query: 149 NHREAWRLFGE---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                         Y + D    R I   ++P   + Q+       +
Sbjct: 180 FKMLDKAAKINNLSYNRLDSQAHRNI-PVIKPTKEELQKHKEFLSRV 225


>gi|209548705|ref|YP_002280622.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534461|gb|ACI54396.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 381

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 63/240 (26%), Gaps = 34/240 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           + +      + L         V +       +      E +
Sbjct: 19  DFITIDTE----------FLRETTFWPELCLIQMASPTTEVLVDPLAKG-IDLAPFFELM 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  V  V H +  +  ++    N  +  H    T V A   G      +V     +S  
Sbjct: 68  ADPKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFG---DSVSYDQLVSRI 122

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K            K         R             EY   DVT  R+++  L+    +
Sbjct: 123 KNVHI-------DKSSRFTDWSRRPLS------DKQLEYALADVTHLRDVYLSLKAELDR 169

Query: 182 E----QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           E         +D       Y +    A    + + + + +    L+ +       +R   
Sbjct: 170 EGRTSWLSEEMDILEARETYDLHPDDAWQRLK-MRLRKPQELAILKFVAAWREREARSRN 228


>gi|149204383|ref|ZP_01881350.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035]
 gi|149142268|gb|EDM30315.1| DNA polymerase III, epsilon subunit [Roseovarius sp. TM1035]
          Length = 231

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 29/177 (16%)

Query: 1   MATLFIDFETR-----SPIDLTKCG-ICKYAEDVCVILF-------------AFGFDD-H 40
           M  + +D ET      S   + + G +  Y        F             AF      
Sbjct: 1   MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQRAMPEAAFAVHGLG 60

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-DIPIHRWI---CT 96
              L D      + Q   + +++  +  V HN+ F+   L A      +P   W     T
Sbjct: 61  DDFLRDKPLFAEIAQEFLDFVQDARL--VIHNAAFDMKFLNAELGWLKLPQLPWDQAVDT 118

Query: 97  LVLAR--SNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNH 150
           L +AR    G P++L A+    ++ +  +   G  L +        E +  R     
Sbjct: 119 LAIARKKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLELIGGRQPDFV 175


>gi|332286832|ref|YP_004418743.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
 gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
          Length = 236

 Score = 55.9 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 49/163 (30%), Gaps = 38/163 (23%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-----DVCVILFAFGF 37
           M  + +D ET                       LT   +  Y       D      A   
Sbjct: 1   MRQIVLDTETTGLDPAQGHRVVELACVEMENRSLTGRHLHLYLNPGRDSDPE----ALAV 56

Query: 38  DDHPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-DIPI----- 90
                E          + Q L + +++ +V I  HN+ F+   L A      +P+     
Sbjct: 57  HGLTTEFLSGHPRFEEVAQQLVDYVKDAEVII--HNAAFDVKFLNAELTRAGLPVFNSLC 114

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            +   +L+ AR        +L A+ E   +S+        L+ 
Sbjct: 115 GKITDSLLHARELHPGKRNSLDALCERYGISNAHRTLHGALLD 157


>gi|260950129|ref|XP_002619361.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
 gi|238846933|gb|EEQ36397.1| hypothetical protein CLUG_00520 [Clavispora lusitaniae ATCC 42720]
          Length = 738

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 50/178 (28%), Gaps = 32/178 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E              Y    C++  +   +     + D +      + L E   
Sbjct: 240 EIAIDLE--------HHDYRSYYGITCLMQIS---NREQDWIVDTLALHDDLRDLNEIFA 288

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQ 121
           N  +  V H +  +   L+    L I       T   ++  G P  +L  + E    +  
Sbjct: 289 NPAILKVLHGANMDIIWLQRDLGLYI--VSLFDTYHASKKLGFPKFSLAYLLE--NFAHF 344

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           K  +  +L     +  T                    +Y + D      I+ +L    
Sbjct: 345 KTSKKYQLADWRIRPLT----------------DAMMQYARADTHFLLNIYDQLRNKL 386


>gi|325088958|gb|EGC42268.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H88]
          Length = 807

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 44/180 (24%), Gaps = 29/180 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E              ++    V L      D    +          QVL E   
Sbjct: 250 EIAIDLE----------HHDAHSYHGLVCLMQISTRDKDWIVDTLKPWREELQVLNEVFS 299

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V H S  +   L+    L I       T   A +   P       ++LK   +K
Sbjct: 300 DPKILKVLHGSTMDVIWLQRDLGLYI--VGLFDTYHAAVALNYPK------KSLKFLLEK 351

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               +                               +Y + D      I+ ++     + 
Sbjct: 352 FANFQAEKKYQIADWRLRP-----------LLPGMFDYARSDTHYLLYIYDQIRNDLIEH 400


>gi|240280781|gb|EER44285.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus H143]
          Length = 671

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 44/180 (24%), Gaps = 29/180 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E              ++    V L      D    +          QVL E   
Sbjct: 250 EIAIDLE----------HHDAHSYHGLVCLMQISTRDKDWIVDTLKPWREELQVLNEVFS 299

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V H S  +   L+    L I       T   A +   P       ++LK   +K
Sbjct: 300 DPKILKVLHGSTMDVIWLQRDLGLYI--VGLFDTYHAAVALNYPK------KSLKFLLEK 351

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               +                               +Y + D      I+ ++     + 
Sbjct: 352 FANFQAEKKYQIADWRLRP-----------LLPGMFDYARSDTHYLLYIYDQIRNDLIEH 400


>gi|225560671|gb|EEH08952.1| exosome complex exonuclease RRP6 [Ajellomyces capsulatus G186AR]
          Length = 807

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 44/180 (24%), Gaps = 29/180 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E              ++    V L      D    +          QVL E   
Sbjct: 250 EIAIDLE----------HHDAHSYHGLVCLMQISTRDKDWIVDTLKPWREELQVLNEVFS 299

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V H S  +   L+    L I       T   A +   P       ++LK   +K
Sbjct: 300 DPKILKVLHGSTMDVIWLQRDLGLYI--VGLFDTYHAAVALNYPK------KSLKFLLEK 351

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               +                               +Y + D      I+ ++     + 
Sbjct: 352 FANFQAEKKYQIADWRLRP-----------LLPGMFDYARSDTHYLLYIYDQIRNDLIEH 400


>gi|114562909|ref|YP_750422.1| ribonuclease D [Shewanella frigidimarina NCIMB 400]
 gi|114334202|gb|ABI71584.1| ribonuclease D [Shewanella frigidimarina NCIMB 400]
          Length = 370

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 82/285 (28%), Gaps = 50/285 (17%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           L +D E     T       K G+ +  +   + L        PV + D            
Sbjct: 26  LVLDTEFVRTRTYY----AKLGLIQAYDGKTLALI------DPVAITDLSP-------FW 68

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L + ++  + H+   +  V       +        + + A   GL   L         
Sbjct: 69  QLLTDQNIVKLVHSCSEDLEVFAHYG--ECQPSPLFDSQIAASFAGLGHGL--------- 117

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                  G   +   C     +    R    +R       +Y   DV    +++ +L+  
Sbjct: 118 -------GYAKLVDACLQVEIDKGESRTDWMNRPLSDAQLQYAANDVFYLYQLYPQLQQK 170

Query: 179 SSKEQELWYLDQT-INDRGYCV-----DVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            + +  + +L +         +     D        +      ++    L+ L    ++ 
Sbjct: 171 LAADNRVEWLFEEGQRMTEGRMSLPAGDSVYLK--VKNAFQLSSQQLAYLKVLAKWRLAK 228

Query: 233 SRCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQV 276
           +        ++  +  L  L     TT    L+S   LT Q  ++
Sbjct: 229 AVSRNLALGFVVKDHALIALAKKQPTTLAE-LNSLNDLTDQEKRI 272


>gi|254456084|ref|ZP_05069513.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083086|gb|EDZ60512.1| ribonuclease D [Candidatus Pelagibacter sp. HTCC7211]
          Length = 203

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 50/175 (28%), Gaps = 18/175 (10%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           + L      +    +            L + L++  +T + H    +   +K        
Sbjct: 38  LCLIQLSTGNSDAHIVQLDRKSYEAPNLIKILKDETITKIFHYGRADMAHIKYYL--KTE 95

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            +  + T + ++          +  +   +       K LI  F           ++   
Sbjct: 96  TNNILDTKIASK----------LARSYSDN----HSLKTLIKEFA--NVDISKQFQSSDF 139

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                    +YC  DV    +I   L  +  +E  +      ++     VD+ LA
Sbjct: 140 GGTLTPAQLKYCANDVIYLHQIHDELFKILERENRIKLYKDCLSFLKTRVDLDLA 194


>gi|332807618|ref|XP_001136533.2| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes]
          Length = 909

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 37/200 (18%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 336 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 393 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 448

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                        R  P           Y + D      I+ +             L+  
Sbjct: 449 -----------RIRPLP------EEMLSYARDDTHYLLYIYDK-----------MRLEMW 480

Query: 192 INDRGYCVDVALAHTLNQIV 211
               G  V + +    ++ +
Sbjct: 481 ERGNGQPVQLQVVWQRSRDI 500


>gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
 gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
          Length = 373

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 48/176 (27%), Gaps = 23/176 (13%)

Query: 28  VCVILFAFGFDDH----PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
             V L    F          + D +     P  L    ++  V  + H++  +  V +  
Sbjct: 39  PQVALVQLCFCGGGATGTAWMIDPLKIED-PAPLANLFKDAGVIKILHSASEDLEVFQRW 97

Query: 84  FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
               +       T   A   GL   L      L+L ++ + +G+       +  T     
Sbjct: 98  LG--VLPLPLFDTQKAAALVGLDFGLGYRSMVLELCNEDLPKGETRSDWLQRPLT----- 150

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                           Y   DV    + ++ +       Q   ++ +   +    +
Sbjct: 151 -----------ESQCHYAAQDVIWLLDAYQIIAERCHSMQRYDWVLEDGEEACRGL 195


>gi|299133731|ref|ZP_07026925.1| ribonuclease D [Afipia sp. 1NLS2]
 gi|298591567|gb|EFI51768.1| ribonuclease D [Afipia sp. 1NLS2]
          Length = 382

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 47/149 (31%), Gaps = 18/149 (12%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
               + D + + +  +   + + +  V  V H +  +  ++     +    H    T V 
Sbjct: 48  DEAVVVDALAEGIDLKPFFDLMADEKVLKVFHAARQDIEIVWHLAGIV--PHPVFDTQVA 105

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           A   G   ++       +++  K+++         +  T                     
Sbjct: 106 AMVLGYGDSIAYDQLVGRITGHKLDKTHRFTDWSRRPLTK----------------EQSA 149

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           Y   DVT  R++F  L+    K +   ++
Sbjct: 150 YALADVTHLRDVFTALDADLKKRKRADWV 178


>gi|108760811|ref|YP_634116.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
 gi|108464691|gb|ABF89876.1| putative ribonuclease D [Myxococcus xanthus DK 1622]
          Length = 389

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E  S           +A    +       DD  V L D +   V+P +L   +
Sbjct: 28  REIAVDLEADS----------MHAFRARLCFLQLATDDQ-VFLLDTLQPGVVPGMLAPLM 76

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG-EALKLS 119
            +   T   H +  +   L     + + +     T   A   G P   L  +  E L + 
Sbjct: 77  ADPARTKFFHAAQGDLQFLAE---VGVRVQGLFDTHRAATLLGWPKVGLADLARERLGVE 133

Query: 120 SQKMEEGKE 128
             K  +  +
Sbjct: 134 LPKEHQQSD 142


>gi|209964842|ref|YP_002297757.1| ribonuclease D, putative [Rhodospirillum centenum SW]
 gi|209958308|gb|ACI98944.1| ribonuclease D, putative [Rhodospirillum centenum SW]
          Length = 385

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 70/270 (25%), Gaps = 45/270 (16%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L      D    +        +   L
Sbjct: 22  YVTVDTEFMREKTYW---------------PQLCLVQVAGPDEAAAIDPLAEGMDLT-PL 65

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            E L +  V  V H +  +  +                T + A   G   +         
Sbjct: 66  FELLHDPGVLKVFHAARQDVEIFVHLTGAV--PAPLFDTQIAAMVCGFGDS--------- 114

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                    + LI +       +     +             Y   DVT  R  +++L  
Sbjct: 115 ------VGYETLITKLTSARIDKSSRFTDWSQRPL-TERQLSYALSDVTHLRPAYEKLRR 167

Query: 178 LSSKEQELWYLDQT----INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
             +K     +LD+      +   Y VD   A    + V  E+ +    L+ +       +
Sbjct: 168 RLAKTGREHWLDEENVILADPATYRVDPEEAWRRLK-VRTEKPRFLAVLKEVAAWREREA 226

Query: 234 RCLEK-LKTWLFLETGLHLEDLTETTCQRV 262
           +  +      L  E  + +     TT + +
Sbjct: 227 QRKDIPRNRVLRDEAIVEIAAHAPTTVEDL 256


>gi|119775068|ref|YP_927808.1| ribonuclease D [Shewanella amazonensis SB2B]
 gi|119767568|gb|ABM00139.1| ribonuclease D [Shewanella amazonensis SB2B]
          Length = 371

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 57/195 (29%), Gaps = 40/195 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L +D E     T                   + L    +D + + L D +    +   
Sbjct: 24  RLLVLDTEFVRTRTYY---------------AKLGLIQV-YDGNTLALIDPLDIQDL-SG 66

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               L N ++  + H+   +  V        +       + + A  +G+   L       
Sbjct: 67  FWALLTNPNILKLVHSCSEDLEVFARYG--KVQPTPLFDSQIAAALSGMGHGL------- 117

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                K+ E + L     KGE+      R   + +       +Y   DV    +++ +LE
Sbjct: 118 --GYAKLVE-ECLGQTLDKGESRTDWIKRPLTDAQ------LQYAANDVFYLYQLYPQLE 168

Query: 177 PLSSKEQELWYLDQT 191
                     ++ + 
Sbjct: 169 QKLKTLGRFDWVLEE 183


>gi|304389499|ref|ZP_07371462.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327309|gb|EFL94544.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 637

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 20/222 (9%)

Query: 53  MPQVLKE----ALENT---DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           +P  L       L +    D     +++   R  L A    ++         +L      
Sbjct: 389 VPDELTPQTEHLLCDALAGDRKKTVYDAKSLRHALHAH-GWELH-GAVTDIKMLDYLVNP 446

Query: 106 PSALKAVGEALK-LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW------RLFG 158
                      K L   +++E    I++  +  T +   + +  +  + W      +   
Sbjct: 447 DGNRTKFAGVTKRLLGWEIDEKPSDISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIY 506

Query: 159 EYCKGDVTVTRE---IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
            Y    +  T E    F++++ L   E  L Y+ + +   G  +D        Q +  E 
Sbjct: 507 AYALLQMQPTLEQLAHFRQVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEV 566

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
               Q         V +    ++L+  LF +  L      + 
Sbjct: 567 AMAQQSAFDSIGREV-NLSSPKQLQEVLFTQLELPKTKKPKP 607


>gi|302306959|ref|NP_983403.2| ACL001Cp [Ashbya gossypii ATCC 10895]
 gi|299788769|gb|AAS51227.2| ACL001Cp [Ashbya gossypii ATCC 10895]
          Length = 745

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 51/190 (26%), Gaps = 34/190 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEA 60
             L +D E              Y     ++             L D +       VL   
Sbjct: 233 KELAVDLE-----------HHDYRSYYGIVCLMQISSRSKD-WLVDTIALRDDLHVLNVI 280

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLS 119
             +  V  V H ++ +   L+      + +     T   +R+ G P  +L          
Sbjct: 281 FTDPTVVKVFHGAFMDMIWLQRDLG--LYVVSLFDTYHASRALGFPKHSLA--------- 329

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L+  F K +T +     +        +   +Y + D      I+  L    
Sbjct: 330 --------YLLETFAKFKTSKKYQLADWRVRPLP-KPLRDYARSDTHFLLSIYDDLRNAL 380

Query: 180 SKEQELWYLD 189
            K  +L  + 
Sbjct: 381 VKAGKLAEVL 390


>gi|50301240|ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens]
 gi|8928564|sp|Q01780|EXOSX_HUMAN RecName: Full=Exosome component 10; AltName: Full=Autoantigen
           PM/Scl 2; AltName: Full=P100 polymyositis-scleroderma
           overlap syndrome-associated autoantigen; AltName:
           Full=Polymyositis/scleroderma autoantigen 100 kDa;
           Short=PM/Scl-100; AltName: Full=Polymyositis/scleroderma
           autoantigen 2
 gi|35555|emb|CAA46904.1| PM/Scl 100kD nucleolar protein [Homo sapiens]
 gi|25140242|gb|AAH39901.1| Exosome component 10 [Homo sapiens]
 gi|49257470|gb|AAH73788.1| Exosome component 10 [Homo sapiens]
 gi|56204112|emb|CAI22107.1| exosome component 10 [Homo sapiens]
 gi|119592085|gb|EAW71679.1| exosome component 10, isoform CRA_c [Homo sapiens]
 gi|190690525|gb|ACE87037.1| exosome component 10 protein [synthetic construct]
 gi|190691893|gb|ACE87721.1| exosome component 10 protein [synthetic construct]
 gi|261858988|dbj|BAI46016.1| exosome component 10 [synthetic construct]
          Length = 885

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 62/230 (26%), Gaps = 38/230 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---------- 181
                        R  P           Y + D      I+ ++     +          
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQ 467

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
              Q    +      +    D +      +      T+     + L    
Sbjct: 468 VVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWR 517


>gi|119622451|gb|EAX02046.1| polymerase (DNA directed), gamma, isoform CRA_b [Homo sapiens]
          Length = 1168

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 102/395 (25%), Gaps = 47/395 (11%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 846

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 847  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 900

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 901  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP 960

Query: 447  AFQKMASTT-----GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +++                A  +   +    W    +   W+                
Sbjct: 961  FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI 1020

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            + + ++K  R+        W +     E+  + G       + +            L   
Sbjct: 1021 SLQDLRKVQRETAR--KSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCC 1078

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +    S           ++ +                  +VQ+ + D   ++   M    
Sbjct: 1079 I----SRALEPSAVQEEFMTSR--------------VNWVVQSSAVDYLHLMLVAMKWLF 1120

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNASMLYHL 650
            +         +++HDE+     + D + A++   +
Sbjct: 1121 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQI 1155


>gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium tumefaciens str. C58]
 gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium tumefaciens str. C58]
          Length = 388

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 77/270 (28%), Gaps = 38/270 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E           + +      + L         V +        +   + E + N
Sbjct: 21  ITIDTE----------FLRETTFWPELCLVQMASPTLEVLVDPLAKGIDLT-PMFELMAN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            +V  V H +  +  ++       +  H    T V A   G   +      +     QK+
Sbjct: 70  PNVVKVFHAARQDIEII-YHLG-GLIPHPIFDTQVAAMVCGFGDS-----ISYDQLVQKI 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           +       +  K         R     +        Y   DVT  R+++  L+    +E 
Sbjct: 123 KNV-----QIDKSSRFTDWSRRPLTEKQLD------YALADVTHLRDVYLSLKAQLEREG 171

Query: 184 ELWYLDQTINDRGYCV------DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
              +L + +N            D A     +++    +      L+ +       +R   
Sbjct: 172 RSLWLTEEMNILESRDTYDMHPDDAWLRLKSRL---RKPTELAILKFVAAWREREARSRN 228

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
             ++ +  + G+      +      LS  +
Sbjct: 229 VPRSRVLKDDGIFEIAQQQPKDAEALSRLR 258


>gi|315656745|ref|ZP_07909632.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492700|gb|EFU82304.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 637

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 20/222 (9%)

Query: 53  MPQVLKE----ALENT---DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           +P  L       L +    D     +++   R  L A    ++         +L      
Sbjct: 389 VPDELTPQTEHLLCDALAGDRKKTVYDAKSLRHALHAH-GWELH-GAVTDIKMLDYLVNP 446

Query: 106 PSALKAVGEALK-LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW------RLFG 158
                      K L   +++E    I++  +  T +   + +  +  + W      +   
Sbjct: 447 DGNRTKFAGVTKRLLGWEIDEKPSDISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIY 506

Query: 159 EYCKGDVTVTRE---IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
            Y    +  T E    F++++ L   E  L Y+ + +   G  +D        Q +  E 
Sbjct: 507 AYALLQMQPTLEQLAHFRQVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEV 566

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
               Q         V +    ++L+  LF +  L      + 
Sbjct: 567 AMAQQSAFDSIGREV-NLSSPKQLQEVLFTQLELPKTKKPKP 607


>gi|254294269|ref|YP_003060292.1| ribonuclease D [Hirschia baltica ATCC 49814]
 gi|254042800|gb|ACT59595.1| ribonuclease D [Hirschia baltica ATCC 49814]
          Length = 390

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 84/303 (27%), Gaps = 52/303 (17%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L      +    L D +   +      
Sbjct: 31  IAVDTEFHRESTFW---------------PKLCLIQAATLEFD-CLIDPLSPNIDLAPFL 74

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + + +T    V H +  +  +      +  P      + V A + GL  +          
Sbjct: 75  DLMADTSRVKVFHAARQDMEIFTKL--IGTPPAPIFDSQVAAMACGLGDS---------- 122

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                   + L+++  K    +     +            +Y +GDVT  R  + +L+  
Sbjct: 123 -----VSYENLVSQLLKARVDKSSQFTDWQRRPL-TEKQLDYARGDVTHLRHCYVKLKAK 176

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
             K   + ++++        V+     T  +           ++       ++    + +
Sbjct: 177 LEKLGRMGWIEEETE---ILVNPDTYDTNPKNAWKRM-----KIRKPRKDYLALIASVSE 228

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR--SAVLKLNTLVE 296
            +  L  E       + +      +    +  P  +          +  +      TL+E
Sbjct: 229 WREKLAQELDKPRSRILKD---DAVQEIAQQKPIDVNAMERLRAVPKGFAKSKHGQTLLE 285

Query: 297 AMN 299
           A+N
Sbjct: 286 AIN 288


>gi|332807620|ref|XP_001136452.2| PREDICTED: exosome component 10 isoform 3 [Pan troglodytes]
          Length = 884

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 62/230 (26%), Gaps = 38/230 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 336 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 393 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 448

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---------- 181
                        R  P           Y + D      I+ ++     +          
Sbjct: 449 -----------RIRPLP------EEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQ 491

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
              Q    +      +    D +      +      T+     + L    
Sbjct: 492 VVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWR 541


>gi|72387778|ref|XP_844313.1| ribosomal RNA processing protein 6 [Trypanosoma brucei TREU927]
 gi|62359465|gb|AAX79902.1| ribosomal RNA processing protein 6 [Trypanosoma brucei]
 gi|70800846|gb|AAZ10754.1| ribosomal RNA processing protein 6 [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 736

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/393 (11%), Positives = 117/393 (29%), Gaps = 49/393 (12%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           ET   +DL       Y    C++  +    D    + DC+       ++       ++  
Sbjct: 265 ETEIAVDLEHHDFYSYQGFTCLMQISTRTQD---FIVDCLKVRANMYLMAPVFLQPNIVK 321

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           V H +  +   L+  F L I       T +  ++  +P +L                   
Sbjct: 322 VFHGAREDVRWLQKDFGLYI--VNLFDTSIALQNLHMPHSLAFA---------------- 363

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------- 177
            +  FC+ + ++     +             Y + D      ++ RL+            
Sbjct: 364 -VDHFCQVKLNKKYQTADWRVRPIP-AEMVSYAQQDTHFLLYVYDRLKQLLLNCEARASV 421

Query: 178 --LSSKEQELWYLDQTINDRGYCVDVALA--HTLNQIVDVERTKLDQELESLTYGLVSSS 233
             +     +   L          +D  +     L + +    +   Q    +      ++
Sbjct: 422 GNMLLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSSSQLQVAREIFNWRDMAA 481

Query: 234 RCLEKL-KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           R  +      + +   L +     T+   VL     ++          ++  + A+   +
Sbjct: 482 READDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRTNVMKLLQIVKDAIGSAD 541

Query: 293 TLVEAMNSDGRLRGTLQFLGASRT----GRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
           +L +  N D + +       A R        +G +     + + +     ++     + T
Sbjct: 542 SLKDGANGDVKPKPLPNVGVALRYMGVHRSMTGTLPS---IEQRADPAFTVEDAHVVVRT 598

Query: 349 SITSDPDPLQIISDCVRS---CVIASEGKKLVV 378
             ++  + ++ ++  +R      IA  G  +V 
Sbjct: 599 EPSAWFETMRNVAAILRRKPYYPIALPGHDVVT 631


>gi|83311936|ref|YP_422200.1| ribonuclease D [Magnetospirillum magneticum AMB-1]
 gi|82946777|dbj|BAE51641.1| Ribonuclease D [Magnetospirillum magneticum AMB-1]
          Length = 397

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 23/186 (12%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L             D +   +    L E + +T+V  V H +  +  +       D
Sbjct: 37  PQLCLVQVA-GPDEARAIDPLAPDMDLAPLFELMADTNVLKVFHAARQDVEIFLHLA--D 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                   T + A   G   +                  + L ++  K    + +   + 
Sbjct: 94  AIPTPIFDTQIAAMVCGFGDS---------------VGYETLASQLAKARIDKSMRFTDW 138

Query: 148 PNHREAWRLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
                +     +Y   DVT  R    ++ +++E     E     +        Y VD   
Sbjct: 139 SIRPLS-EKQIQYALADVTHLRVAYEKLVRKVEKNGRIEWLSEEMALLTEPGTYRVDPEN 197

Query: 204 AHTLNQ 209
           A    +
Sbjct: 198 AWRRLK 203


>gi|88658362|ref|YP_507121.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas]
 gi|88599819|gb|ABD45288.1| putative ribonuclease D [Ehrlichia chaffeensis str. Arkansas]
          Length = 387

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 55/198 (27%), Gaps = 38/198 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E        +     Y     + L    +      + D +   +   VL    
Sbjct: 22  KFIAVDTE------FVRSSSEYY---PKLCLIQIAYGKEQ-FVIDVLAKDMDLSVLGHIF 71

Query: 62  ENTDVTIVAHNSYFER-TVLKACFNLDIPIHRWICTLVLA-----RSNGLPSALKAVGEA 115
            N  +  V H+   +   +L     +         T + A       N +  + K V + 
Sbjct: 72  YNESIIKVFHDCRQDIDALLTKFPEI---PSPIFDTQIAAMFCCCYDNAVGYS-KLVEQF 127

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +S  K+                      N      +     +Y   DV    E+++ L
Sbjct: 128 LGISLDKLSL-----------------KRSNWALRPLSADK-IQYALNDVIYLYELYQIL 169

Query: 176 EPLSSKEQELWYLDQTIN 193
                   +L +  + +N
Sbjct: 170 YNNLLDAGKLPWFLEEMN 187


>gi|70997278|ref|XP_753389.1| DNA polymerase gamma [Aspergillus fumigatus Af293]
 gi|66851025|gb|EAL91351.1| DNA polymerase gamma [Aspergillus fumigatus Af293]
 gi|159126884|gb|EDP52000.1| DNA polymerase gamma [Aspergillus fumigatus A1163]
          Length = 1135

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 88/349 (25%), Gaps = 77/349 (22%)

Query: 309 QFLGASRTGRWSGCV--FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           Q   +  TG  S  +    PQ +P  + +   ++        +  +       +   +++
Sbjct: 651 QVKQSGSTGEKSNRLGFILPQIIPMGTITRRAVENTWLTASNAKAN------RVGSELKA 704

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            + A  G   V AD+   E   +A + G+                  +++        T 
Sbjct: 705 MIKAPPGYVFVGADVDSQEL-WIASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA 763

Query: 427 D----QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R   KV      Y  G K    +      +++         +   E +      
Sbjct: 764 QILGISRNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSEKETQEVATNLYRETKGTRTTR 823

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
           R + EN       + F+    E      R +                  +       A  
Sbjct: 824 RILSENPFWRGGTESFVFNKLEEFADQERPRTP----------------VLGAGITEALM 867

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +        +                                              +
Sbjct: 868 RRFINKGSFMTSR------------------------------------------INWAI 885

Query: 603 QAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           Q+   D   +L   M   +        + +TVHDEI     + D++ A+
Sbjct: 886 QSSGVDYLHLLIISMDYLIRRFNIDARLAITVHDEIRYLVKEEDKYRAA 934


>gi|254718114|ref|ZP_05179925.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
 gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
 gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
 gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
          Length = 234

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 45/161 (27%), Gaps = 36/161 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-----------------------AFGF 37
           M  +  D ET     L      +  E   V L                        A   
Sbjct: 1   MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 56

Query: 38  DD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                 +L D      +     E +      +VAHN+ F+       L      +I    
Sbjct: 57  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEIASEH 114

Query: 93  WICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
            + TL LAR      P++L A+ +   + +        L+ 
Sbjct: 115 IVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLD 155


>gi|225439201|ref|XP_002269553.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 912

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 65/238 (27%), Gaps = 38/238 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEA 115
           L+E  ++     V H +  +   L+  F + I       T   +R   L   +L+ +   
Sbjct: 292 LREVFKDPTKKKVMHGADRDIIWLQRDFGIYI--CNMFDTGQASRVLKLERNSLEHLLHH 349

Query: 116 L-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              +++ K  +  +                R  P+          Y + D      I+  
Sbjct: 350 YCGVTANKEYQNGDW-------------RLRPLPH------EMLRYAREDTHYLLHIYDL 390

Query: 175 LEPL--------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +                     +  + +   + ++    D +  +T          +   
Sbjct: 391 MRTQLLSMAELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQLA 450

Query: 221 ELESLTYGLVSSSRCLEK-LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
            +  L       +R  ++     L  +T L +      T  ++    K   P   +  
Sbjct: 451 IVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVERNL 508


>gi|33862140|ref|NP_893701.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33634358|emb|CAE20043.1| putative ribonuclease D [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 213

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 59/201 (29%), Gaps = 28/201 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D E          G+    +   + L     + +         +      +K+  E
Sbjct: 30  YLAVDTE--------AMGLIHGRD--RLCLIQICNELNLTACIKIELNNSDSPNIKKLFE 79

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           + ++  + H + F+   L+   NL+I      CT + ++          +          
Sbjct: 80  DKNIMKIFHYARFDVAALR--CNLEINTRNIFCTKIASK----------LARTY----TN 123

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               K+LI    + E  +     +  +  +      +Y   DV     I    +     +
Sbjct: 124 KHGLKDLINELLEVELDKSSQSSDWGSLEDLSNKQIDYAANDVR--YLIETMHKLKLILD 181

Query: 183 QELWYLDQTINDRGYCVDVAL 203
           +E  Y       +   V   L
Sbjct: 182 REGRYELAQKCFKTIPVHSEL 202


>gi|4505917|ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens]
 gi|179283|gb|AAB59352.1| PM-Scl autoantigen [Homo sapiens]
 gi|11136976|emb|CAC15569.1| PM-scl autoantigen [Homo sapiens]
 gi|56204111|emb|CAI22106.1| exosome component 10 [Homo sapiens]
          Length = 860

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 37/200 (18%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                        R  P           Y + D      I+ +             L+  
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDK-----------MRLEMW 456

Query: 192 INDRGYCVDVALAHTLNQIV 211
               G  V + +    ++ +
Sbjct: 457 ERGNGQPVQLQVVWQRSRDI 476


>gi|332652795|ref|ZP_08418540.1| exonuclease [Ruminococcaceae bacterium D16]
 gi|332517941|gb|EGJ47544.1| exonuclease [Ruminococcaceae bacterium D16]
          Length = 195

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 25/150 (16%)

Query: 2   ATLFIDFET-RSPID-LTKCGI-----------CKYAEDVCVILFAFGF---DDHPVELW 45
             +  D ET  S  D ++  G+             Y  +      +F        P  + 
Sbjct: 4   RYIAFDVETPNSANDRISAIGVTVVERGAVVEQHDYLVNPETRFASFNVALTGITPEMVA 63

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIH-RWICTLVLAR 101
           D    P + Q L+   ++    ++AHN+ F+ +VL  C   + +       + CT  ++R
Sbjct: 64  DKPAFPQLWQELEPIFDSG--LLIAHNAPFDMSVLAKCLRDYGIRWRPSVSYACTCQMSR 121

Query: 102 SN---GLPSALKAVGEALKLSSQKMEEGKE 128
                     L  + + L L       G +
Sbjct: 122 RLLPQLPNHKLNTLCDFLGLELDHHRAGSD 151


>gi|254234416|ref|ZP_04927739.1| ribonuclease D [Pseudomonas aeruginosa C3719]
 gi|126166347|gb|EAZ51858.1| ribonuclease D [Pseudomonas aeruginosa C3719]
          Length = 374

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 79/275 (28%), Gaps = 39/275 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D E      +        A      L   G       +   +     P    E LE
Sbjct: 27  YLALDTE-----FMRVDTSYPAAG-----LVQVGDGRQEWLIDPLLIQDWSP--FAELLE 74

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEALKLS 119
           +  V  V H    +  V        +P+     T + A   G+  ++   K V E L + 
Sbjct: 75  DERVVKVLHACSEDLEVFLRLTG-SLPV-PLFDTQLAAAYLGMAHSMGYSKLVKEVLDID 132

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K E   + + R                       +   Y   DV    +++  L+   
Sbjct: 133 LPKDETRSDWLQRPLT-------------------EMQMRYAADDVQHLAQVYLALDARL 173

Query: 180 SKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           S+E+  W L+             D   A+   ++    R +    L  L       +R  
Sbjct: 174 SEEKRAWLLEDGAELVANLCRESDPREAYREVKLGWRLRPQQLAVLRELCAWREEQARLR 233

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
            + +  +  E  L          +  L++ + + P
Sbjct: 234 NRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHP 268


>gi|119592083|gb|EAW71677.1| exosome component 10, isoform CRA_a [Homo sapiens]
          Length = 899

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 37/200 (18%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 336 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 393 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 448

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                        R  P           Y + D      I+ +             L+  
Sbjct: 449 -----------RIRPLP------EEMLSYARDDTHYLLYIYDK-----------MRLEMW 480

Query: 192 INDRGYCVDVALAHTLNQIV 211
               G  V + +    ++ +
Sbjct: 481 ERGNGQPVQLQVVWQRSRDI 500


>gi|79323071|ref|NP_001031418.1| 3'-5' exonuclease domain-containing protein / K homology
           domain-containing protein / KH domain-containing protein
           [Arabidopsis thaliana]
 gi|330252678|gb|AEC07772.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis
           thaliana]
          Length = 342

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 71/234 (30%), Gaps = 31/234 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G         ++  AF    + + L D      V+ +  K AL
Sbjct: 57  VIGFDCE---GVDLCRHGKLC------IMQIAFS---NAIYLVDVIEGGEVIMKACKPAL 104

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALK 117
           E+  +T V H+   +   L   F   I +H  + T +         G    L      + 
Sbjct: 105 ESNYITKVIHDCKRDSEAL--YFQFGIRLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVS 162

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           L +     G   I+   K E    +        +R    L       DV     ++ ++ 
Sbjct: 163 LLADPRYCG---ISYEEKEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYLYHKMM 219

Query: 177 PLSSKEQELWYLDQ---TINDRGYCVDVALAHT-----LNQIVDVERTKLDQEL 222
              ++        +            D   A       +   +  E   L++E+
Sbjct: 220 GKLNQRSLWHLAVRGALYCRCLCCMNDADFADWPTVPPIPDNLKSEDQCLEEEI 273


>gi|68171541|ref|ZP_00544920.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999046|gb|EAM85718.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa]
          Length = 387

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 55/198 (27%), Gaps = 38/198 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E        +     Y     + L    +      + D +   +   VL    
Sbjct: 22  KFIAVDTE------FVRSSSEYY---PKLCLIQIAYGKEQ-FVIDVLAKDMDLSVLGHIF 71

Query: 62  ENTDVTIVAHNSYFER-TVLKACFNLDIPIHRWICTLVLA-----RSNGLPSALKAVGEA 115
            N  +  V H+   +   +L     +         T + A       N +  + K V + 
Sbjct: 72  YNESIIKVFHDCRQDIDALLTKFPEI---PSPIFDTQIAAMFCCCYDNAVGYS-KLVEQF 127

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +S  K+                      N      +     +Y   DV    E+++ L
Sbjct: 128 LGISLDKLSL-----------------KRSNWALRPLSADK-IQYALNDVIYLYELYQIL 169

Query: 176 EPLSSKEQELWYLDQTIN 193
                   +L +  + +N
Sbjct: 170 YNNLLDAGKLPWFLEEMN 187


>gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI
           454]
 gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 247

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 52/162 (32%), Gaps = 36/162 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  L +D ET     L   G  +  E  CV +                       A    
Sbjct: 1   MRLLVLDTETTG---LNAKGGDRIIEIGCVEIVNRQLTGNNLHFYVNPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E   D      +   L++ +++ D+ I  HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLRDKPKFAEIADALRDFVKDADIII--HNAPFDIGFLNAEFAMLGLPPFCDHCG 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             I TLV A++       +L A+ E   +S+        L+ 
Sbjct: 116 EVIDTLVQAKAMFPGKRNSLDALCERFGISNAHRTLHGALLD 157


>gi|119592084|gb|EAW71678.1| exosome component 10, isoform CRA_b [Homo sapiens]
          Length = 884

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 62/230 (26%), Gaps = 38/230 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 336 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 392

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 393 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 448

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---------- 181
                        R  P           Y + D      I+ ++     +          
Sbjct: 449 -----------RIRPLP------EEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQ 491

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
              Q    +      +    D +      +      T+     + L    
Sbjct: 492 VVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWR 541


>gi|52425412|ref|YP_088549.1| ribonuclease D [Mannheimia succiniciproducens MBEL55E]
 gi|52307464|gb|AAU37964.1| Rnd protein [Mannheimia succiniciproducens MBEL55E]
          Length = 380

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 59/202 (29%), Gaps = 26/202 (12%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69
           T+S I L    +   +    + L    +D   V L D           K+ L +  +  V
Sbjct: 32  TKSAIALDTEFVRIRSYYPKLGLIQL-YDGEQVSLIDPQEIQDF-SPFKQLLADPKILKV 89

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            H  + +  V +  +         + T ++A   G  +++          + ++++G   
Sbjct: 90  LHACHEDLEVFQHYYQQL--PAPMLDTQIMANFLGFQNSMGLASLIKHYFNLEIDKGASR 147

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
                +  +                     Y   DV     ++ +++    + +    ++
Sbjct: 148 TDWLARPLS----------------NRQLAYAAADVWYLLPLYCKMQNALEQTRWQSAVE 191

Query: 190 QTINDRGYC------VDVALAH 205
              N           +D A   
Sbjct: 192 FDCNLLLEKHRIVKNIDKAYLS 213


>gi|332525056|ref|ZP_08401237.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
 gi|332108346|gb|EGJ09570.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 645

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 26/139 (18%)

Query: 6   IDFETRSPID-----LTKCGICKYA-------EDVC-VILFAFGFDDHPVELWDCVH--- 49
            D ET          + + G  +         E    ++       +  V +        
Sbjct: 458 FDTETTGLEPSAGDEIIQIGATRIVAGKLRRHESFEQLVDPQRAIPERTVAIHGITPAMV 517

Query: 50  -DPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSN 103
                 + +  AL     D  +VAHN+ F+   L   +    +   +   + TL+L++  
Sbjct: 518 AGQPTIREVLPALHAFAHDTVLVAHNAAFDLRFLELKERAAGVRFDM-PVLDTLLLSQVL 576

Query: 104 GLP---SALKAVGEALKLS 119
                  +L+A+ E L + 
Sbjct: 577 HPNQERHSLEAIAERLGVP 595


>gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera]
          Length = 901

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 65/238 (27%), Gaps = 38/238 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEA 115
           L+E  ++     V H +  +   L+  F + I       T   +R   L   +L+ +   
Sbjct: 281 LREVFKDPTKKKVMHGADRDIIWLQRDFGIYI--CNMFDTGQASRVLKLERNSLEHLLHH 338

Query: 116 L-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              +++ K  +  +                R  P+          Y + D      I+  
Sbjct: 339 YCGVTANKEYQNGDW-------------RLRPLPH------EMLRYAREDTHYLLHIYDL 379

Query: 175 LEPL--------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           +                     +  + +   + ++    D +  +T          +   
Sbjct: 380 MRTQLLSMAELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQLA 439

Query: 221 ELESLTYGLVSSSRCLEK-LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
            +  L       +R  ++     L  +T L +      T  ++    K   P   +  
Sbjct: 440 IVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVERNL 497


>gi|18400976|ref|NP_565612.1| 3'-5' exonuclease domain-containing protein / K homology
           domain-containing protein / KH domain-containing protein
           [Arabidopsis thaliana]
 gi|13605561|gb|AAK32774.1|AF361606_1 At2g25910/F17H15.6 [Arabidopsis thaliana]
 gi|18491139|gb|AAL69538.1| At2g25910/F17H15.6 [Arabidopsis thaliana]
 gi|20197359|gb|AAC42241.2| expressed protein [Arabidopsis thaliana]
 gi|21554875|gb|AAM63716.1| unknown [Arabidopsis thaliana]
 gi|330252677|gb|AEC07771.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis
           thaliana]
          Length = 341

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 71/234 (30%), Gaps = 31/234 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G         ++  AF    + + L D      V+ +  K AL
Sbjct: 57  VIGFDCE---GVDLCRHGKLC------IMQIAFS---NAIYLVDVIEGGEVIMKACKPAL 104

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALK 117
           E+  +T V H+   +   L   F   I +H  + T +         G    L      + 
Sbjct: 105 ESNYITKVIHDCKRDSEAL--YFQFGIRLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVS 162

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           L +     G   I+   K E    +        +R    L       DV     ++ ++ 
Sbjct: 163 LLADPRYCG---ISYEEKEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYLYHKMM 219

Query: 177 PLSSKEQELWYLDQ---TINDRGYCVDVALAHT-----LNQIVDVERTKLDQEL 222
              ++        +            D   A       +   +  E   L++E+
Sbjct: 220 GKLNQRSLWHLAVRGALYCRCLCCMNDADFADWPTVPPIPDNLKSEDQCLEEEI 273


>gi|319950372|ref|ZP_08024289.1| ribonuclease D-like protein [Dietzia cinnamea P4]
 gi|319435942|gb|EFV91145.1| ribonuclease D-like protein [Dietzia cinnamea P4]
          Length = 210

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 53/205 (25%), Gaps = 37/205 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+   A+   + L           L            LK+ LE+
Sbjct: 28  IAVDTET--------SGLSWAAD--RLNLIQLSAQSVGGSLVRLSAGAAPL--LKDLLES 75

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            DV  + H + F+   +     +        CT   ++               +L  ++ 
Sbjct: 76  RDVVKIFHFAPFDLRFITQ-LGVA-QAQNIRCTKTASKLLDP-----------QLDPKQH 122

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSS-- 180
                L+ +            R       +       Y   DV     +  +LE      
Sbjct: 123 SLRALLLRKLGV--EITKGEARTSDWSARSLSDSQIRYALDDVAHLERLHSKLEKELEER 180

Query: 181 -------KEQELWYLDQTINDRGYC 198
                  +  +   +D  +   G  
Sbjct: 181 SLIELYRQICDYIPIDALLETSGVP 205


>gi|293374981|ref|ZP_06621276.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325843349|ref|ZP_08167932.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
 gi|292646391|gb|EFF64406.1| DNA polymerase III, epsilon subunit [Turicibacter sanguinis PC909]
 gi|325489378|gb|EGC91751.1| DNA polymerase III, epsilon subunit [Turicibacter sp. HGF1]
          Length = 306

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 49/144 (34%), Gaps = 29/144 (20%)

Query: 1   MATLFIDFET-------RSPIDLTKCGICKYAEDVCVI---------LFAFGFDDHPVEL 44
           M  + IDFET          I LT     +  E    +                      
Sbjct: 1   MNFIAIDFETANEKRDSACSIGLTVVKNNQIIEQKYYLIKPNELRFAPINISIHGIRAS- 59

Query: 45  WDCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLV 98
            D  +     Q    L     N    I+AHN+ F+ +VL+     +++  P  R+ CT++
Sbjct: 60  -DVKNAKTFDQLWPELLPYFTNN--IIMAHNAAFDLSVLRHTLDAYHIPYPNCRYGCTMI 116

Query: 99  LARSNGLP---SALKAVGEALKLS 119
           L+R+       + L  V   L L 
Sbjct: 117 LSRNFFPHLENAKLNTVNHHLGLE 140


>gi|14250912|emb|CAC39261.1| Rrp6p homologue [Trypanosoma brucei]
          Length = 703

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/393 (11%), Positives = 117/393 (29%), Gaps = 49/393 (12%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           ET   +DL       Y    C++  +    D    + DC+       ++       ++  
Sbjct: 232 ETEIAVDLEHHDFYSYQGFTCLMQISTRTQD---FIVDCLKVRANMYLMAPVFLQPNIVK 288

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           V H +  +   L+  F L I       T +  ++  +P +L                   
Sbjct: 289 VFHGAREDVRWLQKDFGLYI--VNLFDTSIALQNLHMPHSLAFA---------------- 330

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------- 177
            +  FC+ + ++     +             Y + D      ++ RL+            
Sbjct: 331 -VDHFCQVKLNKKYQTADWRVRPIP-AEMVSYAQQDTHFLLYVYDRLKQLLLNCEARASV 388

Query: 178 --LSSKEQELWYLDQTINDRGYCVDVALA--HTLNQIVDVERTKLDQELESLTYGLVSSS 233
             +     +   L          +D  +     L + +    +   Q    +      ++
Sbjct: 389 GNMLLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSSPQLQVAREIFNWRDMAA 448

Query: 234 RCLEKL-KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           R  +      + +   L +     T+   VL     ++          ++  + A+   +
Sbjct: 449 READDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRTNVMKLLQIVKDAIGSAD 508

Query: 293 TLVEAMNSDGRLRGTLQFLGASRT----GRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
           +L +  N D + +       A R        +G +     + + +     ++     + T
Sbjct: 509 SLKDGANGDVKPKPLPNVGVALRYMGVHRSMTGTLPS---IEQRADPAFTVEDAHVVVRT 565

Query: 349 SITSDPDPLQIISDCVRS---CVIASEGKKLVV 378
             ++  + ++ ++  +R      IA  G  +V 
Sbjct: 566 EPSAWFETMRNVAAILRRKPYYPIALPGHDVVT 598


>gi|326477901|gb|EGE01911.1| exosome complex exonuclease Rrp6 [Trichophyton equinum CBS 127.97]
          Length = 824

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 47/179 (26%), Gaps = 33/179 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E              Y     V L      +    +          QVL E   
Sbjct: 264 EIAVDLE--------HHDSHVY--HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFA 313

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALK-AVGEALKLSS 120
           +  +  V H S  +   L+      + +     T   A +  LP  +LK  + E +   +
Sbjct: 314 DPSIIKVLHGSSMDVIWLQRDLG--LYLVGLFDTFHAASALQLPKKSLKFLLHEYVGFDA 371

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K  +  +                R             +Y + D      IF RL    
Sbjct: 372 DKQYQTADW-------------RIRPL------LAGMLDYARSDTHFLLYIFDRLRNQL 411


>gi|84501108|ref|ZP_00999343.1| ribonuclease D [Oceanicola batsensis HTCC2597]
 gi|84391175|gb|EAQ03593.1| ribonuclease D [Oceanicola batsensis HTCC2597]
          Length = 385

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 78/274 (28%), Gaps = 44/274 (16%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVM 53
             + +D E     T                   + L        DD    L D +   + 
Sbjct: 21  DYVTVDTEFLRERTYYS---------------QLCLIQMAMPGEDDENAVLIDPLSGNLD 65

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
              L E   N  V  V H +  +  +     +  +       T + A   G        G
Sbjct: 66  LAPLYELFRNQAVVKVFHAARQDLEIF--YVDAGVIPQPLFDTQIAAMVCGF-------G 116

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +          + L+ R  K +  +     +            +Y   DVT  R+I++
Sbjct: 117 EQVGY--------ETLVKRIAKQQLDKSSRFTDWSRRPL-TEAQKKYALADVTHLRKIYE 167

Query: 174 RLEPLSSKEQELWYLDQT---INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            L     +++   ++++    +      +                 +    +++L     
Sbjct: 168 YLADKLRRQKREAWVEEELGILTSPETYIVRPEEAWQRVRTRTSSPRFLALVKTLAEFRE 227

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
           S ++     +  +F +  L     T+ T  + LS
Sbjct: 228 SYAQRNNVPRNRVFKDDALTELASTKPTDIKDLS 261


>gi|330504002|ref|YP_004380871.1| ribonuclease D [Pseudomonas mendocina NK-01]
 gi|328918288|gb|AEB59119.1| ribonuclease D [Pseudomonas mendocina NK-01]
          Length = 377

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 70/274 (25%), Gaps = 39/274 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE---A 60
           + +D E      +        A      L      D    L D +         +     
Sbjct: 27  VALDTE-----FMRVDTFYPIAG-----LLQVSGGDG-AYLIDPLR----ISDWRPFAAL 71

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE  +V  V H+   +  V                T + A    L  ++           
Sbjct: 72  LEAPNVVKVLHSCSEDLEVFLRLSGSL--PAPLFDTQLAAGYLNLGFSMG---------- 119

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L+      E  +     +      +  L   Y   DV    E+++ L    +
Sbjct: 120 -----YSRLVQALLDIELPKGETRSDWLQRPLS-ELQVRYAAEDVLHLVEVYRALMARLA 173

Query: 181 KEQELWYLDQTINDRG---YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
            ++  W L+            V    A    ++      +    L +L       +R   
Sbjct: 174 PQKVEWVLEDGAELVANLSREVAPEDAWREAKLAWKLSRQQQAVLRALCAWREREARARN 233

Query: 238 KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           + +  +  E  L     T+      L+  + + P
Sbjct: 234 QPRNRVLREHSLWPLARTQPDNLVALARIEDMHP 267


>gi|296446899|ref|ZP_06888835.1| ribonuclease D [Methylosinus trichosporium OB3b]
 gi|296255574|gb|EFH02665.1| ribonuclease D [Methylosinus trichosporium OB3b]
          Length = 388

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 77/302 (25%), Gaps = 46/302 (15%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             V +             D + + +      E + +  V  V H +  +  ++       
Sbjct: 37  PKVCVIQLA-SPEEAFAVDTLAEGLDLSPFFELMADASVVKVFHAARQDLEIIWRLA--R 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G                    E   L+    K    +     + 
Sbjct: 94  LIPTPLFDTQVAAMVCGFG------------DQASYVE---LVKAIAKESLDKSSRFTDW 138

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE-LWYLDQTI-------------- 192
                +     +Y   DVT  R+I+  L     +     W +D+                
Sbjct: 139 SKRPLSVAQ-IDYAIADVTHLRQIYTHLRQRLERSNRLDWLVDEMRTLTSPETYEQSPEN 197

Query: 193 --NDRGYCV----DVALAHTLNQIVDVERTKLD------QELESLTYGLVSSSRCLEKLK 240
                 + V    D+A+   L    + E    D       + + L    +++ R  E L 
Sbjct: 198 AWERLRHRVRKPRDLAVLMELAAWREAEAQSRDVPRARVLKDDMLVEIALAAPRSQEALG 257

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
                  GL            V     +      ++   R   + + V  L  L+  +  
Sbjct: 258 ELRAFPRGLERSRSGADIVAAVERGLARDPAALPRIERERRSGNGATVELLKVLLRQVAE 317

Query: 301 DG 302
           + 
Sbjct: 318 ET 319


>gi|220924978|ref|YP_002500280.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
 gi|219949585|gb|ACL59977.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
          Length = 389

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 58/214 (27%), Gaps = 23/214 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D    L D +   +        + +  V  V H++  +  ++       
Sbjct: 37  PKLCLIQIAAPDGSTALVDPLAPAIDLTPFFALMGDERVLKVFHSARQDLEII--WLQGG 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +    +  T V A   G   +                  ++L+    K +  +     + 
Sbjct: 95  LLPQPFFDTQVAAMVCGYGDS---------------VSYEQLVNDVAKAKIDKSSRFTDW 139

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI----NDRGYCVDVAL 203
                +      Y   DVT   ++++ L           +LD+ +    +   Y  D   
Sbjct: 140 SRRPLS-EAQLSYALSDVTHLIKVYEALARQLLATDRGAWLDEEMAVLTSPETYRADPDQ 198

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           A        + + +    L  +       ++   
Sbjct: 199 AWRRLAG-RMRKAREIAILMEVAAWREREAQSRN 231


>gi|162146523|ref|YP_001600982.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|209543478|ref|YP_002275707.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785098|emb|CAP54642.1| putative Ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531155|gb|ACI51092.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
          Length = 393

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 67/273 (24%), Gaps = 50/273 (18%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + ID E     T                   + L         V + D +   +    L 
Sbjct: 34  VSIDTEFVRERTYW---------------PELCLVQLA-GQDEVVVVDTLAPGIDLAPLG 77

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L++ +V  V H +  +  +    F           T V A   G        G+ +  
Sbjct: 78  VLLDDPEVVKVFHAARQDLEIFLYLFGHL--PAALFDTQVAAMVAGF-------GDQVGY 128

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEP 177
            +         I              R               Y   DVT  R +++ L  
Sbjct: 129 DNLVASLTGAHID----------KAHRFSDWSARPLSEAQIAYAAADVTHLRTVYQLLLE 178

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER------TKLDQELESLTYGLVS 231
                     LD   +D     D A      + +           ++   L ++T     
Sbjct: 179 RLE---REGRLDWVASDLAVLSDPATFRPDPETLWERMRPRTSNRRMLGVLRAITAWRER 235

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
            ++ +   +  L  +  L     T       L+
Sbjct: 236 EAQRVNVPRQRLLKDESLLEIAATAPADVDALA 268


>gi|322804522|emb|CBZ02073.1| putative DNA polymerase III epsilon chain [Clostridium botulinum
           H04402 065]
          Length = 309

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 37/147 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVEL-----------WDCV 48
           M  + IDFET +    + C I     +D  ++          V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  HDPVMPQVLKEALENTDV-----------TIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
              + P ++K+ LE   +            ++AHN+ F+ +VLK     +N+ +P   +I
Sbjct: 53  IHGIRPHMVKDELEFDKIWGKIKDYFNNNLVIAHNASFDMSVLKSTLKLYNIKMPSFEYI 112

Query: 95  CTLVLA---RSNGLPSALKAVGEALKL 118
           CT+ L+    SN   + L  V   L  
Sbjct: 113 CTMKLSKNFYSNIDNARLNTVNNFLGY 139


>gi|311347878|gb|ADP90884.1| DNA polymerase subunit gamma-1 [Homo sapiens]
          Length = 1239

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 846

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 847  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 900

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 901  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQP 960

Query: 447  AFQKMASTT-----GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
              +++                A  +   +    W    +   W+                
Sbjct: 961  FAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWI 1020

Query: 502  ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            + + ++K  R+        W +     E+  + G       + +            L   
Sbjct: 1021 SLQDLRKVQRETAR--KSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCC 1078

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +    S           ++ +                  +VQ+ + D   ++   M    
Sbjct: 1079 I----SRALEPSAVQEEFMTSR--------------VNWVVQSSAVDYLHLMLVAMKWLF 1120

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1121 EEFAIDGRFCISIHDEVRYLVREEDCYRAALALQITNLLTRCM 1163


>gi|303251523|ref|ZP_07337698.1| hypothetical protein APP6_0727 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253716|ref|ZP_07535582.1| hypothetical protein appser6_22070 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649643|gb|EFL79824.1| hypothetical protein APP6_0727 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306858828|gb|EFM90875.1| hypothetical protein appser6_22070 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 215

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 48/169 (28%), Gaps = 36/169 (21%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDP------VMPQVLKEALENTDVT------IVAHN-SY 74
             +++     +D    L+             +     + L             + HN + 
Sbjct: 59  GEIVVIGVAINDEETVLFYREDWQSAGREVDILTRFNDFLREKASKCKTVPQFIGHNIAK 118

Query: 75  FE-RTVLKACFNLDIPIH------RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGK 127
           F+ R + +      +  +          T+      G   +L  + + L +  +   +G 
Sbjct: 119 FDDRFIFQRSVINGVKPYYTASRQNTYDTMTEWAGYGGTVSLDKLCKVLDIEQKGEIDGS 178

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           ++      G                      EYC  DV   R+I+KR+ 
Sbjct: 179 KVWQYVQDG----------------KIAEVAEYCAKDVERVRQIYKRMN 211


>gi|326932437|ref|XP_003212324.1| PREDICTED: exosome component 10-like [Meleagris gallopavo]
          Length = 888

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 34/181 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E              +    C++  +   +D    + D +       +L E  
Sbjct: 304 KEFALDLE--------HHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMSILNETF 352

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLS 119
            +  +  V H +  +   L+  F   + +     T   AR   L   +L  + +    + 
Sbjct: 353 TDPAIVKVLHGADSDVEWLQKDFG--LYLVNMFDTHQAARLLNLGKHSLDHLLKLYCSVD 410

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R  P          +Y + D      I+ ++    
Sbjct: 411 ADKQYQLADW-------------RIRPLP------EEMIQYARDDTHYLLYIYDKMREAL 451

Query: 180 S 180
            
Sbjct: 452 W 452


>gi|297825683|ref|XP_002880724.1| hypothetical protein ARALYDRAFT_481448 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326563|gb|EFH56983.1| hypothetical protein ARALYDRAFT_481448 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 342

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 72/234 (30%), Gaps = 31/234 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEAL 61
            +  D E    +DL + G         ++  AF    + + L D +    +  +  K AL
Sbjct: 57  VIGFDCE---GVDLCRHGKLC------IMQIAFS---NAIYLVDVIEGGEVLMKACKPAL 104

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALK 117
           E+T +T V H+   +   L   F   I +H  + T +         G    L      + 
Sbjct: 105 ESTYITKVIHDCKRDSEAL--YFQFGIRLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVS 162

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           L +     G   I+   K E    +        +R    L       DV     ++ ++ 
Sbjct: 163 LLADPRYCG---ISYEEKEEVRVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYLYHKMM 219

Query: 177 PLSSKEQELWYLDQ---TINDRGYCVDVALAHT-----LNQIVDVERTKLDQEL 222
              ++        +            D   A       +   +  E   L++E+
Sbjct: 220 GKLNQRSLWHLAVRGALYCRCLCCMNDADFADWPTVPPIPDNLKSEDQCLEEEI 273


>gi|260580546|ref|ZP_05848374.1| ribonuclease D [Haemophilus influenzae RdAW]
 gi|260092888|gb|EEW76823.1| ribonuclease D [Haemophilus influenzae RdAW]
          Length = 399

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 95/328 (28%), Gaps = 64/328 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  Y     + L    +D   V L D        P      L 
Sbjct: 52  VALDTE--------FMRVSTYF--PKLGLIQL-YDGEHVSLIDPLAITDFSP--FVALLA 98

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-EALKLS 119
           N  V  + H+   +  V    F  D      I T ++AR  GL   + L  +  + L + 
Sbjct: 99  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVE 156

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K       I R                       +  +Y  GDV     ++  LE   
Sbjct: 157 IDKGATRTNWIKRPLS-------------------DIQLQYAAGDVWYLLPLYHILEKEL 197

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           +K      +            +A  H L +    +          L    +S  R L + 
Sbjct: 198 AKTPWEQAVRDDCELV-----LAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLAQW 252

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA------------------IQVFNNRM 281
           +  + +E  L L  + ++     L    K  P+                    ++     
Sbjct: 253 RQNVAIERDLALSYIVKS---EHLWKVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLS 309

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
           +A R +       +E ++ D R + T++
Sbjct: 310 QARRISSNDYPKSIERISEDPRYKKTIR 337


>gi|99082698|ref|YP_614852.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99038978|gb|ABF65590.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 243

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 52/197 (26%), Gaps = 58/197 (29%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMP 54
           M  + +D ET         G   ++ D  ++      +                    MP
Sbjct: 1   MREIVLDTETT--------GFDPFSGD-RIVEIG-AVELLNHMPTGETFHVYINPQRSMP 50

Query: 55  QVLK-------EALENTD-------VTI---------------------VAHNSYFERTV 79
                      + LE          +                       V HN+ F+   
Sbjct: 51  HEAFGVHGIGPDLLEPPQPPAPGQVILKDKPLFAEVGQAFLDFVRDSKMVIHNASFDMKF 110

Query: 80  LKACFNL----DIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIAR 132
           L A         +P+ + I TL +A  R  G P+ L A+     + +  +   G  L + 
Sbjct: 111 LNAELGWMNLPQLPMDQAIDTLAMARKRFPGSPATLDALCRRFGIDNSNRTLHGALLDSE 170

Query: 133 FCKGETHECLYDRNKPN 149
                  E +  R    
Sbjct: 171 ILADVYLELIGGRQPDF 187


>gi|302415657|ref|XP_003005660.1| 3'-5' exonuclease domain-containing protein [Verticillium
           albo-atrum VaMs.102]
 gi|261355076|gb|EEY17504.1| 3'-5' exonuclease domain-containing protein [Verticillium
           albo-atrum VaMs.102]
          Length = 894

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 47/178 (26%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              YA    + L      D    +          +VL E  
Sbjct: 288 KEIAVDLE--------HHDTRTYAGL--LSLMQISTRDQDWIVDTLKPWRHQLEVLNEVF 337

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +  V H ++ +   L+    L I       T   A   G P    ++   LK    
Sbjct: 338 TNPKIVKVFHGAHMDMQWLQRDLGLYIN--GLFDTFFAAEILGYPQR--SLAYLLKRFVD 393

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              + K  +A              +         +F  Y + D      IF R+    
Sbjct: 394 FDADKKYQMA--------------DWRIRPLPEEMFY-YARSDTHYLLYIFDRIRNEL 436


>gi|194860399|ref|XP_001969574.1| GG10182 [Drosophila erecta]
 gi|190661441|gb|EDV58633.1| GG10182 [Drosophila erecta]
          Length = 1142

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 65/240 (27%), Gaps = 28/240 (11%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D          L     +    +V HN  ++R  LK  + ++    R++ T+ L      
Sbjct: 233 DSERPHYTTDELIPLGTSGPGLVVGHNVSYDRARLKEQYLIEDTGTRFVDTMSLHMCVSG 292

Query: 106 PSA-----LKA----VGEALKLSSQ----KMEEGKELI--ARFCKGETHECLYDRNKPNH 150
            ++     LK+      E L    Q     + +   L         E      +      
Sbjct: 293 VTSYQRAMLKSKKEPAAEDLGWLEQSSLNSLVDVHRLYCGGDALSKEPRNIFVEGTLEQV 352

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-TIND----------RGYCV 199
           R++++    YC  DV  T  I + L PL +            +                +
Sbjct: 353 RQSFQSLTNYCASDVEATHRILRVLYPLYADRFPHPASLAGMLEMGSAYLPVNSNWERYI 412

Query: 200 DVALA--HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
             A      L+        +  +E  SL              + W   E  L      + 
Sbjct: 413 REAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKP 472



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 84/307 (27%), Gaps = 38/307 (12%)

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVTT 412
              +   +RS V A  G +LV AD+   E  + +     +  GE               + 
Sbjct: 783  DRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKSN 842

Query: 413  YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
             +   ++  A+     R   KV+  A  Y  G    + +        +      K     
Sbjct: 843  GSDMHSI-TAKAVGISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKMF 901

Query: 473  EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
               +    +                      + +       +           +A    I
Sbjct: 902  SITKGKRVY---------------RLREEFHDELDDRAYSSY-----------EASRLAI 935

Query: 533  ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
            +  + +     R       +    N +  + +G       +G   S          +E  
Sbjct: 936  QRNRTLTEVFHRPNWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALEADGGPEQEQR 995

Query: 593  YGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS---M 646
            +       +VQ+ + D   ++   M     +     L+ HDE+     +     A+    
Sbjct: 996  FLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEEFSPKAALAMH 1055

Query: 647  LYHLMTS 653
            + +LMT 
Sbjct: 1056 ITNLMTR 1062


>gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 867

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 19/126 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+E  ++     + H +  +   L+  F + +       T   +R   L           
Sbjct: 321 LREIFKDPKKKKIMHGADRDIIWLQRDFGIYV--CNLFDTGQASRVLNLGRN-------- 370

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + L+  FC    ++   + +             Y + D      I+  + 
Sbjct: 371 --------SLEFLLQHFCGVTANKEYQNADWRIRPLP-EEMTRYAREDTHYLLYIYDVMR 421

Query: 177 PLSSKE 182
               + 
Sbjct: 422 LELERM 427


>gi|312062860|gb|ADQ12722.1| DnaQ-like exonuclease domain-like protein [Acinetobacter phage
           phiAB1]
          Length = 286

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 84/299 (28%), Gaps = 64/299 (21%)

Query: 1   MAT--LFIDFETRSPIDLTKCG--ICKYAEDVCVILFAFGFDDH--PVELWDCVHDPVMP 54
           M    + +DFE     +   CG     +  +  V+   +  D+     E +   +     
Sbjct: 1   MKHNWIILDFE---VENYEYCGSLASPHCPENYVVAAGWACDNGLVKSEYYTEPNQWAAS 57

Query: 55  QVLKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHRWICTLVLARSN--- 103
               E L N+ V  VAHN  FE   L        K   N      R  CT          
Sbjct: 58  TAFDEDLLNSKVL-VAHNLSFELHWLLATKFELIKKFLN---NGGRVFCTQYAEFLITHQ 113

Query: 104 -GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
             +   L+         ++K++  K L             +++          L  EY  
Sbjct: 114 TEMYPKLEDCSVKYG-GTKKIDAVKLL-------------WEQGYKTSEIDQALLMEYLA 159

Query: 163 ----GDVTVTREIFKR---------LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
               GDV  TR +            +  ++    +    +      G  V++ +A     
Sbjct: 160 DEHSGDVANTRRVCFAQVAYMQEVGMYEMAKMRMDSLLFNAIATYNGLYVNMDVAKKNMD 219

Query: 210 IVDVERTKLDQEL-----ESLTYGLVSSSRCLEKLKTWLF-------LETGLHLEDLTE 256
                  +L +++     + L   L  S      +  +LF        +         +
Sbjct: 220 EQYKRIAELQEDVRSYLPKDLPAELEFSFTSGYHMSAFLFGGTITYDKKVPYDPPKFVK 278


>gi|294013112|ref|YP_003546572.1| ribonuclease D [Sphingobium japonicum UT26S]
 gi|292676442|dbj|BAI97960.1| ribonuclease D [Sphingobium japonicum UT26S]
          Length = 205

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 32/204 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+    + +CV+  + G  D  +  ++   D   P  L+ AL +
Sbjct: 20  IAVDTET--------MGLITPRDRLCVVQISDGQGDEHLVRFNPGSDYAAP-NLRAALAD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H   F+   ++    +        CT + +R          LK +   L    
Sbjct: 71  PARLKLYHFGRFDIAAIRHYLGVVAAP--VYCTKIASRLVRTYTDRHGLKELVREL---- 124

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +                     EY   DV     +   L+   +
Sbjct: 125 --------LGQELSKVQQSSDWGG------PVLSDAQKEYAASDVRYLHALKAELDKRLA 170

Query: 181 KEQELWYLDQTINDRGYCVDVALA 204
           +E  +       +   +  ++ LA
Sbjct: 171 REGRMELAQACFDFLPHRAELDLA 194


>gi|195119063|ref|XP_002004051.1| GI19730 [Drosophila mojavensis]
 gi|193914626|gb|EDW13493.1| GI19730 [Drosophila mojavensis]
          Length = 1143

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 74/275 (26%), Gaps = 40/275 (14%)

Query: 41  PVELWDCVHDPV---MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
            VE  D   +         L          +V HN  ++R  ++  + ++    R++ T+
Sbjct: 224 HVEPIDVDSNERPHYTLDELIPLGHKEPSLVVGHNVSYDRARIREQYLIEDTKTRFVDTM 283

Query: 98  VLA----------RSNGLPSA------LKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
            L           R+            L  + ++  L++                E    
Sbjct: 284 SLHICVSGVTSYQRAMLKSKKDPAVEDLDWLAQS-SLNNLVDVHRLYCGGEPLSKEPRNI 342

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-TINDRGYCV- 199
             +      R+ ++    YC GDV  T  I  +L PL ++           +      + 
Sbjct: 343 FVEGTLEQVRQQFQSLVNYCAGDVEATHRILGKLYPLYAERFPHPVTLAGMLEMGTAYLP 402

Query: 200 ----------DVALA-HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
                     D  LA   L+        +  +E  +L +            + W      
Sbjct: 403 VNSNWERYIRDAQLAYEDLSIEAKYHLGRRAEEACALLHDEKYRKNLWLWDEDWSVQALK 462

Query: 249 LH--LEDLTETTCQRVLSSNKKLTPQAIQVFNNRM 281
           L    +    +T         +      Q+   R 
Sbjct: 463 LKQMPKRKQLSTV-----QLPEQGLDVEQLRLQRK 492



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 91/326 (27%), Gaps = 37/326 (11%)

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            LP+   +     + +     + ++       I   +RS V A  G KLV AD+   E  +
Sbjct: 755  LPQVVVAGTLTRRAMESTWMTASN--SRANRIGSELRSMVQAPPGYKLVGADVDSQELWI 812

Query: 389  LA-----WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
             +     +  GE               +  +   ++  A+V    R   KV+  A  Y  
Sbjct: 813  ASVLGDAYAHGEHGATPLGWMTLSGSKSNGSDMHSI-TAKVVGISRDHAKVLNYARIYGA 871

Query: 444  GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            G +  + +       L+      K        +    +   ++E   +   +  +     
Sbjct: 872  GQQFAETLLQQFNPTLSATEAKAKAMKMFAATKGKRVY--RLREEFHDEQEDKAYSSYEA 929

Query: 504  ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
             R      +  S +             + + G       R +      + +   L   L 
Sbjct: 930  RRFALQRNRSVSEI---------FHRPSWQGGTESAMFNRLEEIATREQPETPFLNCRL- 979

Query: 564  SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNATKA 620
               S      G                  +       +VQ+ + D   ++   M      
Sbjct: 980  ---SRALDSNGEADLEQR-----------FLPTRINWVVQSGAVDFLHLMLVSMRWLLGP 1025

Query: 621  GYDIVLTVHDEIVCETPDTDEFNASM 646
                 L+ HDE+     D     A++
Sbjct: 1026 HARFCLSFHDELRYLVKDEMAPKAAL 1051


>gi|152985900|ref|YP_001349451.1| ribonuclease D [Pseudomonas aeruginosa PA7]
 gi|150961058|gb|ABR83083.1| ribonuclease D [Pseudomonas aeruginosa PA7]
          Length = 393

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 81/276 (29%), Gaps = 41/276 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            L +D E           +  +     ++      D     L D  +     P    E L
Sbjct: 46  YLALDTE--------FMRVDTFYPAAGLVQVG---DGRREWLIDPLLVRDWGP--FAELL 92

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEALKL 118
           E+  V  V H    +  V        +P+     T + A   G+  ++   K V E L +
Sbjct: 93  EDPRVVKVLHACSEDLEVFLRLTG-SLPV-PLFDTQLAAAYLGMAHSMGYSKLVKEVLDI 150

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K E   + + R                       +   Y   DV    +++  L+  
Sbjct: 151 DLPKDETRSDWLQRPLT-------------------EMQMRYAADDVQHLAQVYLALDAR 191

Query: 179 SSKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            S+E+  W L+             D   A+   ++    R +    L  L       +R 
Sbjct: 192 LSEEKRAWLLEDGAELVANLCRESDPREAYREVKLGWRLRPQQLAVLRELCAWREEQARL 251

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
             + +  +  E  L          +  L++ + + P
Sbjct: 252 RNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHP 287


>gi|260431958|ref|ZP_05785929.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415786|gb|EEX09045.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 240

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 42/189 (22%)

Query: 1   MATLFIDFETR-----SPIDLTKCGI-------------CKY--------AEDVCVILFA 34
           M  + +D ET      S   + + G                Y        AE   V    
Sbjct: 1   MREIVLDTETTGFDPESGDRIVEIGAIELWNHVATGETYHVYINPERSMPAEAFGVHGIG 60

Query: 35  FGF-----DDHPVELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL- 86
                      P ++   + D  +   + +A  +   D  +V HN+ F+   L A     
Sbjct: 61  PDLLEPPQKPEPGQI--TLKDKPVFAQIGQAFRDFVGDARLVIHNAAFDMKFLNAELGWM 118

Query: 87  ---DIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHE 140
               IP+ + + TL +A  R  G P++L A+     + +  ++  G  L +        E
Sbjct: 119 GLPPIPMEQALDTLAIARKRFPGSPASLDALCRRFNIDNSNRVLHGALLDSEILAEVYLE 178

Query: 141 CLYDRNKPN 149
            +  R    
Sbjct: 179 LIGGRQPDF 187


>gi|192291826|ref|YP_001992431.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
 gi|192285575|gb|ACF01956.1| ribonuclease D [Rhodopseudomonas palustris TIE-1]
          Length = 392

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
               + D + D +  +   + + N  V  V H +  +  ++     +    H    T V 
Sbjct: 48  EEALVIDALADGIDLKPFFDLMANEQVLKVFHAARQDIEIVWHRAGIV--PHPIFDTQVA 105

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           A   G   ++       +++  + ++         +  T                +    
Sbjct: 106 AMVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSRRPLT----------------QEQVH 149

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVER 215
           Y   DVT  R++F  L+    K     ++ + +          V    A    +   V +
Sbjct: 150 YAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEVLTSPSTYDVHPERAWERLKT-RVRK 208

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
            K    L  +       ++  +  ++ +  +  L        T    L     L     
Sbjct: 209 PKELAVLMEIAAWREQEAQSRDVPRSRVLKDDALGDIATHAPTS---LEKLANLRSLPK 264


>gi|16272339|ref|NP_438552.1| ribonuclease D [Haemophilus influenzae Rd KW20]
 gi|1173094|sp|P44442|RND_HAEIN RecName: Full=Ribonuclease D; Short=RNase D
 gi|1573361|gb|AAC22048.1| ribonuclease D (rnd) [Haemophilus influenzae Rd KW20]
          Length = 399

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 78/272 (28%), Gaps = 46/272 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  Y     + L    +D   V L D        P      L 
Sbjct: 52  VALDTE--------FMRVSTYF--PKLGLIQL-YDGEHVSLIDPLAITDFSP--FVALLA 98

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-EALKLS 119
           N  V  + H+   +  V    F  D      I T ++AR  GL   + L  +  + L + 
Sbjct: 99  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVE 156

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K       I R                       +  +Y  GDV     ++  LE   
Sbjct: 157 IDKGATRTNWIKRPLS-------------------DIQLQYAAGDVWYLLPLYHILEKEL 197

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           +K      +            +A  H L +    +          L    +S  R L + 
Sbjct: 198 AKTPWEQAVRDDCELV-----LAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLAQW 252

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  + +E  L L  + ++     L    K  P
Sbjct: 253 RQNVAIERDLALSYIVKS---EHLWKVAKNNP 281


>gi|315646467|ref|ZP_07899585.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
 gi|315278110|gb|EFU41430.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
           V453]
          Length = 961

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 26/145 (17%)

Query: 1   MATLFIDFETR---SPIDLTKCGICKYAEDVCV-ILFAFGFDDH--------------PV 42
           M    +DFET    S  ++ + G+    ED  +  ++    +                  
Sbjct: 1   MKFAVLDFETTGNQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLTGISDS 60

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
           ++ D      M   L   L++  V +V HN  F+   L+             R + T+  
Sbjct: 61  DVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTMHF 118

Query: 100 ARSNGLPSA---LKAVGEALKLSSQ 121
            +      +   L  V     L   
Sbjct: 119 LKICFPSLSSYQLGMVSSHFGLEHD 143


>gi|71051605|ref|NP_001012748.1| exosome component 10 [Gallus gallus]
          Length = 910

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 34/181 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E              +    C++  +   +D    + D +       +L E  
Sbjct: 326 KEFALDLE--------HHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMSILNETF 374

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLS 119
            +  +  V H +  +   L+  F   + +     T   AR   L   +L  + +    + 
Sbjct: 375 TDPAIVKVLHGADSDVEWLQKDFG--LYLVNMFDTHQAARLLNLGKHSLDHLLKLYCSVD 432

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R  P          +Y + D      I+ ++    
Sbjct: 433 ADKQYQLADW-------------RIRPLP------EEMIQYARDDTHYLLYIYDKMREAL 473

Query: 180 S 180
            
Sbjct: 474 W 474


>gi|39936108|ref|NP_948384.1| ribonuclease D [Rhodopseudomonas palustris CGA009]
 gi|39649962|emb|CAE28486.1| ribonuclease D [Rhodopseudomonas palustris CGA009]
          Length = 392

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
               + D + D +  +   + + N  V  V H +  +  ++     +    H    T V 
Sbjct: 48  EEALVIDALADGIDLKPFFDLMANEQVLKVFHAARQDIEIVWHRAGIV--PHPIFDTQVA 105

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           A   G   ++       +++  + ++         +  T                +    
Sbjct: 106 AMVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSRRPLT----------------QEQVH 149

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVER 215
           Y   DVT  R++F  L+    K     ++ + +          V    A    +   V +
Sbjct: 150 YAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEVLTSPSTYDVHPERAWERLKT-RVRK 208

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
            K    L  +       ++  +  ++ +  +  L        T    L     L     
Sbjct: 209 PKELAVLMEIAAWREQEAQSRDVPRSRVLKDDALGDIATHAPTS---LEKLANLRSLPK 264


>gi|308069470|ref|YP_003871075.1| DnaQ family exonuclease/DinG family helicase, [Paenibacillus
           polymyxa E681]
 gi|305858749|gb|ADM70537.1| DnaQ family exonuclease/DinG family helicase, putative
           [Paenibacillus polymyxa E681]
          Length = 955

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 38/170 (22%)

Query: 1   MATLFIDFETR---SPIDLTKCGICKYAED------------------VCVILFAFGFDD 39
           M    +DFET    S  D+ + G+     D                    +     G  D
Sbjct: 1   MKFAVLDFETTGTQSADDIIQVGLAIIDHDNSISRVYGSYVNPGRSIPPFITGLT-GITD 59

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICT 96
             V+  D      M   L   L++  V +V HN  F+   L+             R + T
Sbjct: 60  DDVK--DAPALEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDT 115

Query: 97  L----VL-----ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
           +    ++     +   G  S+   +       +         +   C GE
Sbjct: 116 MDFLKIMFPSLSSYQLGFVSSEFELAHDRPHQADSDALATAEVFLKCLGE 165


>gi|296206702|ref|XP_002750328.1| PREDICTED: exosome component 10 isoform 2 [Callithrix jacchus]
          Length = 885

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 52/212 (24%), Gaps = 36/212 (16%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L           + D +       +L E+L N  +  V H +  +   L+  F   + + 
Sbjct: 328 LMQISTRMED-FIIDTLELRSDMYILNESLTNPAIVKVFHGADSDIEWLQKDFG--LYVV 384

Query: 92  RWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
               T   AR   L   +L  + +    + S K  +  +                R  P 
Sbjct: 385 NMFDTHQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADW-------------RIRPLP- 430

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------------EQELWYLDQTINDRGY 197
                     Y + D      I+ ++                   Q    +      +  
Sbjct: 431 -----EEMLSYARDDTHYLLYIYDKMRLELWDRGNSQPVQLQVVWQRSRDICLKKFIKPI 485

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
             D +      +      T+     + L    
Sbjct: 486 FTDESYLELYRKQKKHLNTQQLAAFQLLFAWR 517


>gi|218184595|gb|EEC67022.1| hypothetical protein OsI_33743 [Oryza sativa Indica Group]
          Length = 854

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 71/279 (25%), Gaps = 40/279 (14%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           FA         +        +   L+E  ++     V H +  +   L+  F + +    
Sbjct: 254 FAISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYV--CN 311

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T   +R   +                     + L+  FC    ++     +      
Sbjct: 312 LFDTGQASRILQMDRN----------------SLEHLLHHFCGVTANKEYQSADWRLRPL 355

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTI----NDRGYCVDVALAHT 206
                 +Y + D      I+  +          E   L +             +  L   
Sbjct: 356 P-DEMIKYAREDTHYLLYIYDLMRLRLVKESSDENDLLLEVYKRSKEICLQLYEKELLTH 414

Query: 207 LNQIVDVERTKLDQELESLT--YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
            + +      + + +   L+    +      + + +      TG  L +    T   +  
Sbjct: 415 SSYLYIHGLKENEFDARQLSVLANIYKWRDSVARGED---ESTGYILPNK---TLLEIAK 468

Query: 265 SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
                T +  ++        +S  L L   +  + S  R
Sbjct: 469 QMPATTGRLKRIV-------KSKNLYLERHLGHVISTIR 500


>gi|196003864|ref|XP_002111799.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
 gi|190585698|gb|EDV25766.1| hypothetical protein TRIADDRAFT_55196 [Trichoplax adhaerens]
          Length = 289

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NL-DIPIHRWICTLVLARSNGL- 105
             + Q  ++ ++    T++ HN +F+   +   F   N+ +I   R I T+++AR     
Sbjct: 83  DGIVQDFRDFIQED--TLIIHNGHFDIKFINNEFQKLNIPEISFERVIDTMLMARKLYPR 140

Query: 106 -PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            P++L ++ +   +       G   +      +       +++ 
Sbjct: 141 QPASLDSLCDRFNIDKSSRSLGHGALTDVKLLQLVYAKLLKDQD 184


>gi|218892602|ref|YP_002441471.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
 gi|254239667|ref|ZP_04932989.1| ribonuclease D [Pseudomonas aeruginosa 2192]
 gi|126193045|gb|EAZ57108.1| ribonuclease D [Pseudomonas aeruginosa 2192]
 gi|218772830|emb|CAW28624.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
          Length = 374

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 83/278 (29%), Gaps = 45/278 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKE 59
            L +D E           +  +     ++      D     L D    P++ Q      E
Sbjct: 27  YLALDTE--------FMRVDTFYPAAGLVQVG---DGRQEWLID----PLLIQDWSPFAE 71

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEAL 116
            LE+  V  V H    +  V        +P+     T + A   G+  ++   K V E L
Sbjct: 72  LLEDERVVKVLHACSEDLEVFLRLTG-SLPV-PLFDTQLAAAYLGMAHSMGYSKLVKEVL 129

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +   K E   + + R                       +   Y   DV    +++  L+
Sbjct: 130 DIDLPKDETRSDWLQRPLT-------------------EMQMRYAADDVQHLAQVYLALD 170

Query: 177 PLSSKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              S+E+  W L+             D   A+   ++    R +    L  L       +
Sbjct: 171 ARLSEEKRAWLLEDGAELVANLCRESDPREAYREVKLGWRLRPQQLAVLRELCAWREEQA 230

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           R   + +  +  E  L          +  L++ + + P
Sbjct: 231 RLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHP 268


>gi|39933378|ref|NP_945654.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           CGA009]
 gi|39653003|emb|CAE25745.1| putative DNA polymerase III epsilon chain [Rhodopseudomonas
           palustris CGA009]
          Length = 232

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 45/191 (23%), Gaps = 39/191 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF--GFDDHPVELWDCVHDPVMPQVLK 58
           M  + +D ET     L    +        +                     +  MP    
Sbjct: 1   MREIVLDTETTGLDPLRGDRLV------EIGCVEIFNRMPTGRTYHQYLNPERDMPAEAF 54

Query: 59  -------EALENT---------------DVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                  E L +                D  +V HN+ F+       L       +P  R
Sbjct: 55  AVHGLSSEFLADKPLFAHVADEFLEFIGDAPLVIHNASFDIGFINAELSRLSRAPVPRDR 114

Query: 93  WICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNK 147
            + TL+LAR      +  L  +     + + +  +   L+                    
Sbjct: 115 LVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQL 174

Query: 148 PNHREAWRLFG 158
                   + G
Sbjct: 175 ILADVPVEVAG 185


>gi|85709987|ref|ZP_01041052.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1]
 gi|85688697|gb|EAQ28701.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. NAP1]
          Length = 215

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 26/168 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D ET         G+  + + +CV+  + G  D  +  +    D   P  L   L +
Sbjct: 25  LAVDTET--------MGLITHRDRLCVVQISDGSGDEHLVRFSPGSDYEAP-NLSAILAD 75

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H + F+   ++    +        CT + ++            +   L +   
Sbjct: 76  ESRVKLYHFARFDLAAIQYYLGVVAAP--VFCTKIASKLVR------TYTDRHGLKNLTD 127

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           E   E I++  +                E      EY   DV     +
Sbjct: 128 ELLGESISKQQQSSDWGG---------PELNDAQREYAASDVRYLHRL 166


>gi|239610958|gb|EEQ87945.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ER-3]
 gi|327351664|gb|EGE80521.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 814

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 41/177 (23%), Gaps = 29/177 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E              Y     V L      +    +          Q+L E   
Sbjct: 250 EIAIDLE--------HHDTHSY--HGLVCLMQISTREKDWIVDTLKPWREELQILNEVFA 299

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V H S  +   L+      + +     T   A +   P        +LK   +K
Sbjct: 300 DPKIIKVLHGSTMDVIWLQRDLG--LYLVGLFDTYHAAVALNYPK------RSLKFLLEK 351

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               +                               +Y + D      I+ ++    
Sbjct: 352 FVNFQAEKKYQMADWRLRP-----------LLPGMFDYARSDTHYLLYIYDQIRNSL 397


>gi|261206146|ref|XP_002627810.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis
           SLH14081]
 gi|239592869|gb|EEQ75450.1| exosome complex exonuclease Rrp6 [Ajellomyces dermatitidis
           SLH14081]
          Length = 814

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 41/177 (23%), Gaps = 29/177 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E              Y     V L      +    +          Q+L E   
Sbjct: 250 EIAIDLE--------HHDTHSY--HGLVCLMQISTREKDWIVDTLKPWREELQILNEVFA 299

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V H S  +   L+      + +     T   A +   P        +LK   +K
Sbjct: 300 DPKIIKVLHGSTMDVIWLQRDLG--LYLVGLFDTYHAAVALNYPK------RSLKFLLEK 351

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               +                               +Y + D      I+ ++    
Sbjct: 352 FVNFQAEKKYQMADWRLRP-----------LLPGMFDYARSDTHYLLYIYDQIRNSL 397


>gi|224003495|ref|XP_002291419.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973195|gb|EED91526.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 181

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 47/185 (25%), Gaps = 36/185 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWD-CVHDPVMPQVL 57
           +  + +D E  S                 V L             L D      V+P  L
Sbjct: 28  IREIALDLEAHSHRTFA----------GFVCLIQLSIHISSGYDFLIDALSLRHVIPTCL 77

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL 116
              L N ++  V H +  +   L+  F     +     T   +R+     + L  +    
Sbjct: 78  GPILANPNILKVMHGADSDIPWLQRDFG--CYVVNLFDTGRASRALKFQSAGLAFLLRKY 135

Query: 117 -KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             L   K  +  +                R  P+          Y   D     +I+ +L
Sbjct: 136 AGLDPDKAHQLSDW-------------RRRPLPDD------MRTYAVADTRYLLDIYDKL 176

Query: 176 EPLSS 180
                
Sbjct: 177 RLELK 181


>gi|82621130|gb|ABB86253.1| 3'-5' exonuclease domain-containing protein-like [Solanum
           tuberosum]
          Length = 338

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 54/184 (29%), Gaps = 23/184 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G         ++  AF      + L D       + Q  K AL
Sbjct: 55  VIGFDCE---GVDLCRHGTLC------IMQLAF---PDAIYLVDAVQGGEAVVQACKPAL 102

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL----K 117
           E+  +T V H+   +   L   F   I +H  + T +             V +       
Sbjct: 103 ESNYITKVIHDCKRDSEAL--YFQFGIKLHNVVDTQIAYSLINEQEGHARVPDCHISFVG 160

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLE 176
           L +     G   ++   K E    L    K                 DV     I+ ++ 
Sbjct: 161 LLADPRYCG---VSYDEKEEVRVLLRQDPKYWTYRPLSEQMIRAAADDVRFLLHIYHKMV 217

Query: 177 PLSS 180
              +
Sbjct: 218 QKLN 221


>gi|56697032|ref|YP_167394.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
 gi|56678769|gb|AAV95435.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
          Length = 385

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 69/277 (24%), Gaps = 52/277 (18%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVMP 54
            + +D E     T                   + L    +         L D + + +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAYPGEDADSAVLVDPLAEGLEL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L     +T V  V H +  +  +     +  +       T V A   G        GE
Sbjct: 67  EPLYTLFRDTSVVKVFHAARQDLEIF--WVDAGVFPEPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ + C+    +     +      +      Y   DVT  R+I++ 
Sbjct: 118 QVGY--------ETLVRKICRQGLDKTSRFTDWSRRPLSDAQ-KTYALADVTHLRQIYEH 168

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           L    +K     ++     +     D A      +             + L         
Sbjct: 169 LAADLAKTGRSHWV---AEELRTLTDPATYDIRPEEAWRRIKTRTNSGKFLAVVREL--- 222

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
              + +     +  +    + +      L       P
Sbjct: 223 --AQFRESYAQDNNVPRNRVFKD---DALIELASTKP 254


>gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
 gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
           27678]
          Length = 328

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 44/139 (31%), Gaps = 25/139 (17%)

Query: 6   IDFETRSPID----------LTKCGICKYAEDVCVILFAFGFDDHP--------VELWDC 47
           +DFET               L         ED    L     D           VEL   
Sbjct: 20  VDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVHRDIGAQWIHHISAVELIHA 79

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHR--WICTLVLARS 102
                + + L++ L       VAHN  F+   L         DIP++    +CT+ L+RS
Sbjct: 80  PEFEGIARELRDLLA--GRVFVAHNVAFDSKFLLSEYRRLGTDIPVNSHTMLCTMKLSRS 137

Query: 103 NGLPSALKAVGEALKLSSQ 121
                +L        + ++
Sbjct: 138 LIGVGSLADCCREFGIDNE 156


>gi|150398405|ref|YP_001328872.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
 gi|150029920|gb|ABR62037.1| DNA polymerase III, epsilon subunit [Sinorhizobium medicae WSM419]
          Length = 242

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 29/191 (15%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVILFAFGFDDHPVELWDCV---HD-- 50
           M  +  D ET    +     +   GI    +           +    ++       H   
Sbjct: 1   MREIIFDTETTGLDNREDRVIEIGGIELENQFPTGRTIHIYINPGDRKVHPEALAVHGIT 60

Query: 51  ----------PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI---HRWICT 96
                       + Q + +   +     VAHN+ F+   +      L +P     R I T
Sbjct: 61  DDFLKDKPSFAEIAQEIVDFFGDAR--WVAHNATFDMGFINAEFERLGLPPVGSDRVIDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           L LAR      P++L A+     + +  +   G  L +        E +  R        
Sbjct: 119 LSLARRKHPMGPNSLDALCRRYGIDNSHRTRHGALLDSELLAEVYIEMIGGRQAALGLVM 178

Query: 154 WRLFGEYCKGD 164
               G   + D
Sbjct: 179 TETGGRSLEAD 189


>gi|47934632|gb|AAT39754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 79

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 25/97 (25%)

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
            GR+ G +   GA  TGR +        +P                              
Sbjct: 6   TGRIHGKVNTCGA-VTGRMTHSSPNLAQVPASHSP------------------------Y 40

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            +  R      +G  LV  D +G+E R+LA    ++ 
Sbjct: 41  GEDCRELFTVEDGYCLVGMDASGLELRMLAHYMNDED 77


>gi|126737525|ref|ZP_01753255.1| ribonuclease D [Roseobacter sp. SK209-2-6]
 gi|126720918|gb|EBA17622.1| ribonuclease D [Roseobacter sp. SK209-2-6]
          Length = 388

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 52/194 (26%), Gaps = 41/194 (21%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMP 54
            + +D E     T                   + L    F    +    L D + + +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAFAGDGEEDAVLVDPLAEGLAL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L +   N  V  V H +  +  +     +  +       T V A   G        GE
Sbjct: 67  DPLYDLFRNEAVVKVFHAARQDLEIF--WVDAGVFPKPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ +  K    +     +      +      Y   DVT  R I++ 
Sbjct: 118 QVGY--------ETLVRKIAKQSLDKSSRFTDWSRRPLSGAQ-KTYALADVTHLRRIYEF 168

Query: 175 LEPLSSKEQELWYL 188
           L     K     ++
Sbjct: 169 LAKELEKSGRSHWV 182


>gi|319898197|ref|YP_004158290.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
 gi|319402161|emb|CBI75687.1| DNA polymerase III epsilon chain [Bartonella clarridgeiae 73]
          Length = 235

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 59/216 (27%), Gaps = 36/216 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------AFGFDDHPVEL 44
           M  +  D ET            +  E  C+ +                      D  V +
Sbjct: 1   MREIIFDTETTGLN----KESDRIIEIGCIEMINRYLTGRRFHVYLNPQGVVIPDEVVAI 56

Query: 45  WDCVH----DPVMPQVLKEALEN--TDVTIVAHNSYFERTV----LKACFNLDIPIHRWI 94
               +    D      + +AL +     TIVAHN+ F+       L+      + I+  I
Sbjct: 57  HGLTNERLKDEKKFDDIVDALLDFIDGATIVAHNANFDIGFLNAELERVNKPLVSINHVI 116

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKPN 149
            TL +AR        +L  + +   + +        L+                      
Sbjct: 117 DTLAIARRRFPTGPNSLDVLCKRFGIDNSHRVLHGALLDAEILADVYIELIGGKQGIFGF 176

Query: 150 HR-EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
              E + +       +   T +I     P    +QE
Sbjct: 177 DNCEDFDVMSVQDGKNAFHTTKIRFHPLPQRLSKQE 212


>gi|313106280|ref|ZP_07792525.1| ribonuclease D [Pseudomonas aeruginosa 39016]
 gi|310879027|gb|EFQ37621.1| ribonuclease D [Pseudomonas aeruginosa 39016]
          Length = 374

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 83/278 (29%), Gaps = 45/278 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKE 59
            L +D E           +  +     ++      D     L D    P++ Q      E
Sbjct: 27  YLALDTE--------FMRVDTFYPAAGLVQVG---DGRQEWLID----PLLIQDWSPFAE 71

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEAL 116
            LE+  V  V H    +  V        +P+     T + A   G+  ++   K V E L
Sbjct: 72  LLEDERVVKVLHACSEDLEVFLRLTG-SLPV-PLFDTQLAAAYLGMAHSMGYSKLVKEVL 129

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +   K E   + + R                       +   Y   DV    +++  L+
Sbjct: 130 DIDLPKDETRSDWLQRPLT-------------------EMQMRYAADDVQHLAQVYLALD 170

Query: 177 PLSSKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              S+E+  W L+             D   A+   ++    R +    L  L       +
Sbjct: 171 ARLSEEKRAWLLEDGAELVANLCRESDPREAYREVKLGWRLRPQQLAVLRELCAWREEQA 230

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           R   + +  +  E  L          +  L++ + + P
Sbjct: 231 RLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHP 268


>gi|116049246|ref|YP_791951.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390324|ref|ZP_06879799.1| ribonuclease D [Pseudomonas aeruginosa PAb1]
 gi|115584467|gb|ABJ10482.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 374

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 83/278 (29%), Gaps = 45/278 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKE 59
            L +D E           +  +     ++      D     L D    P++ Q      E
Sbjct: 27  YLALDTE--------FMRVDTFYPAAGLVQVG---DGRQEWLID----PLLIQDWSPFAE 71

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEAL 116
            LE+  V  V H    +  V        +P+     T + A   G+  ++   K V E L
Sbjct: 72  LLEDERVVKVLHACSEDLEVFLRLTG-SLPV-PLFDTQLAAAYLGMAHSMGYSKLVKEVL 129

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +   K E   + + R                       +   Y   DV    +++  L+
Sbjct: 130 DIDLPKDETRSDWLQRPLT-------------------EMQMRYAADDVQHLAQVYLALD 170

Query: 177 PLSSKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              S+E+  W L+             D   A+   ++    R +    L  L       +
Sbjct: 171 ARLSEEKRAWLLEDGAELVANLCRESDPREAYREVKLGWRLRPQQLAVLRELCAWREEQA 230

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           R   + +  +  E  L          +  L++ + + P
Sbjct: 231 RLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHP 268


>gi|307293724|ref|ZP_07573568.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1]
 gi|306879875|gb|EFN11092.1| 3'-5' exonuclease [Sphingobium chlorophenolicum L-1]
          Length = 205

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 59/204 (28%), Gaps = 32/204 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D ET         G+    + +CV+  + G  D  +  ++   D   P  L+  L +
Sbjct: 20  IAVDTET--------MGLITPRDRLCVVQISDGQGDEHLVRFNPGSDYAAP-NLRAVLAD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSS 120
                + H   F+   ++    +        CT + +R          LK +   L    
Sbjct: 71  PARLKLYHFGRFDIAAIRHYMGIVAAP--VYCTKIASRLVRTYTDRHGLKELVREL---- 124

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L     K +                     EY   DV     +   L+    
Sbjct: 125 --------LGQELSKVQQSSDWGG------PVLSDPQKEYAASDVRYLHALKAELDKRLV 170

Query: 181 KEQELWYLDQTINDRGYCVDVALA 204
           +E  +       +   +  ++ LA
Sbjct: 171 REGRMELAQACFDFLPHRAELDLA 194


>gi|296206700|ref|XP_002750327.1| PREDICTED: exosome component 10 isoform 1 [Callithrix jacchus]
          Length = 860

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 52/212 (24%), Gaps = 36/212 (16%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L           + D +       +L E+L N  +  V H +  +   L+  F   + + 
Sbjct: 328 LMQISTRMED-FIIDTLELRSDMYILNESLTNPAIVKVFHGADSDIEWLQKDFG--LYVV 384

Query: 92  RWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
               T   AR   L   +L  + +    + S K  +  +                R  P 
Sbjct: 385 NMFDTHQAARLLNLGRHSLDHLLKLYCNVESNKQYQLADW-------------RIRPLP- 430

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSK------------EQELWYLDQTINDRGY 197
                     Y + D      I+ ++                   Q    +      +  
Sbjct: 431 -----EEMLSYARDDTHYLLYIYDKMRLELWDRGNSQPVQLQVVWQRSRDICLKKFIKPI 485

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
             D +      +      T+     + L    
Sbjct: 486 FTDESYLELYRKQKKHLNTQQLAAFQLLFAWR 517


>gi|163841492|ref|YP_001625897.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
 gi|162954968|gb|ABY24483.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209]
          Length = 157

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 31/145 (21%)

Query: 512 QKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYR 571
           + + R   L   +  A               R   P               PS R L   
Sbjct: 3   RTYPRAVAL---VENAARAGERGEIVSTFLGRSSPP---------------PSERWLA-- 42

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLT-ENIVQAVSRDILAEGMMNATKA-------GYD 623
                RS                G+ T   +VQ  + +  +  +    +          +
Sbjct: 43  ---AQRSTTEQEQHWADNLARSRGRFTRNFVVQGSAAEWASCWLAELRRRLRAQPGLNAE 99

Query: 624 IVLTVHDEIVCETPDTDEFNASMLY 648
           +V  +HDE++   P++     S L 
Sbjct: 100 MVFFLHDEVMVHCPESAVEQVSALI 124


>gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234]
 gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234]
          Length = 232

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 29/173 (16%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVILFAFGFDDHPVELWDCV---HD-- 50
           M  +  D ET          +   G+    +           +    ++       H   
Sbjct: 1   MREIIFDTETTGLDSREDRVIEIGGVELENQFPTGRTIHIYINPGDRKVHPDALAVHGIT 60

Query: 51  ----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRWI---CT 96
                       + + + +   +     VAHN+ F+   + A F+ L +P         T
Sbjct: 61  DDFLKDKPSFADVVEEIVDFFGDAR--WVAHNATFDIGFINAEFDRLGLPPVVIDRVTDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           L LAR      P++L A+     + +  + + G  L +        E +  R 
Sbjct: 119 LALARRKHPMGPNSLDALCRRYGIDNSHRAKHGALLDSELLAEVYIEMIGGRQ 171


>gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256045675|ref|ZP_05448553.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC
           23457]
 gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 234

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 45/161 (27%), Gaps = 36/161 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-----------------------AFGF 37
           M  +  D ET     L      +  E   V L                        A   
Sbjct: 1   MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 56

Query: 38  DD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                 +L D      +     E +      +VAHN+ F+       L      +I    
Sbjct: 57  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEH 114

Query: 93  WICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
            + TL LAR      P++L A+ +   + +        L+ 
Sbjct: 115 IVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLD 155


>gi|254474856|ref|ZP_05088242.1| ribonuclease D [Ruegeria sp. R11]
 gi|214029099|gb|EEB69934.1| ribonuclease D [Ruegeria sp. R11]
          Length = 385

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 30/200 (15%)

Query: 1   MATLFI-D-FETRSPIDLTKCGICKYAED-------VCVILFAFGF---DDHPVELWDCV 48
           M T+   D  ET          +    E          + L    +   D+    L D +
Sbjct: 1   MKTITTTDELETFCQEAAQHPYVTVDTEFLRERTYFSKLCLVQLAYPGKDNENAVLVDPL 60

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
            D +  + L     N  V  V H +  +  +     +  +       T V A   G    
Sbjct: 61  ADGLSLEPLYALFRNESVVKVFHAARQDLEIF--WVDAQVFPTPLFDTQVAAMVCGF--- 115

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
               GE +          + L+ +  K    +     +      +      Y   DVT  
Sbjct: 116 ----GEQVGY--------ETLVRKIVKQGLDKTSRFTDWSRRPLSDAQ-KTYALADVTHL 162

Query: 169 REIFKRLEPLSSKEQELWYL 188
           R+I++ L     + +   ++
Sbjct: 163 RQIYEHLAAELKRTERSHWV 182


>gi|188582284|ref|YP_001925729.1| ribonuclease D [Methylobacterium populi BJ001]
 gi|179345782|gb|ACB81194.1| ribonuclease D [Methylobacterium populi BJ001]
          Length = 384

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 47/165 (28%), Gaps = 18/165 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D    L D +   +  +   E + +     V H++  +  ++       
Sbjct: 37  PKLCLIQMAGPDGFACLVDPLAKDLDLKPFFELMADESTVKVFHSARQDLEII--WLLGG 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +  H +  T V A   G   +                  ++L+    K    +     + 
Sbjct: 95  LLPHPFFDTQVAAMVCGYGDS---------------VSYEQLVNDVAKARIDKSSRFTDW 139

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                +      Y   DVT    I++ L           +LD+ +
Sbjct: 140 SRRPLS-EAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWLDEEM 183


>gi|148827593|ref|YP_001292346.1| ribonuclease D [Haemophilus influenzae PittGG]
 gi|148718835|gb|ABQ99962.1| ribonuclease D [Haemophilus influenzae PittGG]
          Length = 401

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 78/272 (28%), Gaps = 46/272 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  Y     + L    +D   V L D        P      L 
Sbjct: 52  VALDTE--------FMRVSTYF--PKLGLIQL-YDGERVSLIDPLAITDFSP--FVALLA 98

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-EALKLS 119
           N  V  + H+   +  V    F  D      I T ++AR  GL   + L  +  + L + 
Sbjct: 99  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNIE 156

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K       I R                       +  +Y  GDV     ++  LE   
Sbjct: 157 IDKGATLTNWIKRPLS-------------------DIQLQYAAGDVWYLLPLYHILEKEL 197

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           +K      +            +A  H L +    +          L    +S  R L + 
Sbjct: 198 AKTPWEQAVRDDCELI-----LAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLAQW 252

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  + +E  L L  + ++     L    K  P
Sbjct: 253 RQNVAIERDLALSYIVKS---EHLWKVAKNNP 281


>gi|330994285|ref|ZP_08318213.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
 gi|329758752|gb|EGG75268.1| DNA polymerase III subunit epsilon [Gluconacetobacter sp. SXCC-1]
          Length = 226

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 51/185 (27%), Gaps = 36/185 (19%)

Query: 1   MA-TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL-- 57
           M  T+  D ET     L      +  E   + L                 +  +P+    
Sbjct: 1   MKRTILFDTETTGLDPLKG---DRVIEIAALELVG-DLPTGRNFHVLIDPERDVPEEASR 56

Query: 58  -----KEALENT---------------DVTIVAHNSYFERTV----LKACFNLDIPIHRW 93
                +  LE                 D  ++AHN+ F+       L       + + R 
Sbjct: 57  VHGFTRADLEGKPKFAEVASGFLEFVGDDPLIAHNARFDFGFLNAELARAGQPVLDMGRM 116

Query: 94  ICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKP 148
           + TL +AR    G+P++L A+     +   +      L+                 R   
Sbjct: 117 VDTLDMARERFPGMPNSLDALCRRFSIDLSERTTHNALLDCRLLAAVYLELTGGRQRGLS 176

Query: 149 NHREA 153
              E 
Sbjct: 177 LAVED 181


>gi|289705267|ref|ZP_06501666.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
 gi|289558017|gb|EFD51309.1| DNA-directed DNA polymerase [Micrococcus luteus SK58]
          Length = 578

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 594 GGKLTENIVQAVSRDILAEGM----MNATKAGYD--IVLTVHDEIVCETPDTDEFNASML 647
           G      +VQ  + +     M         AG    +V  VHDE+V   P T+      +
Sbjct: 485 GRFTRNFVVQGTAAEWALCWMGEIRRRLRSAGMRTELVFFVHDEVVLHGPATEAEAVRTV 544

Query: 648 YHL 650
              
Sbjct: 545 VAE 547


>gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|189025128|ref|YP_001935896.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690204|ref|ZP_05153458.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254694694|ref|ZP_05156522.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254696321|ref|ZP_05158149.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700703|ref|ZP_05162531.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|254705074|ref|ZP_05166902.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|254709049|ref|ZP_05170860.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254713525|ref|ZP_05175336.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254716120|ref|ZP_05177931.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|254731237|ref|ZP_05189815.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256030574|ref|ZP_05444188.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256060036|ref|ZP_05450218.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|256158570|ref|ZP_05456460.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253981|ref|ZP_05459517.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256258458|ref|ZP_05463994.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260169479|ref|ZP_05756290.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99]
 gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330]
 gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1
           str. 9-941]
 gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA
           polymerase 3, epsilon subunit [Brucella melitensis
           biovar Abortus 2308]
 gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840]
 gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365]
 gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445]
 gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99]
 gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
           B3196]
          Length = 234

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 45/161 (27%), Gaps = 36/161 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-----------------------AFGF 37
           M  +  D ET     L      +  E   V L                        A   
Sbjct: 1   MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 56

Query: 38  DD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                 +L D      +     E +      +VAHN+ F+       L      +I    
Sbjct: 57  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEH 114

Query: 93  WICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
            + TL LAR      P++L A+ +   + +        L+ 
Sbjct: 115 IVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLD 155


>gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
 gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308 A]
          Length = 248

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 45/161 (27%), Gaps = 36/161 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-----------------------AFGF 37
           M  +  D ET     L      +  E   V L                        A   
Sbjct: 15  MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70

Query: 38  DD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                 +L D      +     E +      +VAHN+ F+       L      +I    
Sbjct: 71  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEH 128

Query: 93  WICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
            + TL LAR      P++L A+ +   + +        L+ 
Sbjct: 129 IVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLD 169


>gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 248

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 45/161 (27%), Gaps = 36/161 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-----------------------AFGF 37
           M  +  D ET     L      +  E   V L                        A   
Sbjct: 15  MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70

Query: 38  DD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                 +L D      +     E +      +VAHN+ F+       L      +I    
Sbjct: 71  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEH 128

Query: 93  WICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
            + TL LAR      P++L A+ +   + +        L+ 
Sbjct: 129 IVDTLALARRKHPIGPNSLDALCKRYGIDNSHRTLHGALLD 169


>gi|237716863|ref|ZP_04547344.1| DNA polymerase I [Bacteroides sp. D1]
 gi|229442846|gb|EEO48637.1| DNA polymerase I [Bacteroides sp. D1]
          Length = 435

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 14/68 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----MPQVL 57
             L +D ET     +          D  ++  +F   ++         D      + +  
Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426

Query: 58  KEALENTD 65
           +   EN +
Sbjct: 427 RPVFENEN 434


>gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 468

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 41/157 (26%), Gaps = 63/157 (40%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            D ET   +               V+                ++  ++P  + + L +  
Sbjct: 279 FDTETTGLLP----------HKDEVVQIGA---------VRVLNGRIVPGEVLDLLVDPG 319

Query: 66  VTI-------------------------------------VAHNSYFERTVLKAC---FN 85
           + I                                     VAHN+ F+   L+       
Sbjct: 320 IPIPASSSRVHKVTDAMVAGKPDIGEAGRRFHRFAKGSVIVAHNAPFDMAFLRRHRDRMG 379

Query: 86  LDIPIHRWICTLVLARSN---GLPSALKAVGEALKLS 119
           ++   H  + T++L+           L A+ + L + 
Sbjct: 380 VEWD-HPILDTVLLSAVLFGASETHTLDALCQRLGVE 415


>gi|229472265|gb|ACQ72647.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 196

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 64/277 (23%), Gaps = 103/277 (37%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R    AS G  +V ADL+GIE R+LA          A                +   A  
Sbjct: 13  RRLFCASPGHIMVGADLSGIELRMLAHYL-------ARYDDGRYGDILLHGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G +       +   +L                         
Sbjct: 66  IGISRRLVKTVTYAFLYGAGDQRI---GESYDQSLPPDKAKQ------------------ 104

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              + +++A+      + +L     +A ++              
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVEATKKAADR-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          +    GR +                           K    ++Q+
Sbjct: 134 -------------GFIRSIDGRHINVDSSH---------------------KALNMLLQS 159

Query: 605 VSRDILAEGMMNATKAGYDI----------VLTVHDE 631
            +  I    M+ A      I          +  +HDE
Sbjct: 160 SAGCIAKRWMVIANDNFPTIDNEYLAHTHQLAFIHDE 196


>gi|123226358|emb|CAM23946.1| exosome component 10 [Mus musculus]
          Length = 728

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQ 467

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 468 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502


>gi|328780055|ref|XP_623215.2| PREDICTED: hypothetical protein LOC550822 isoform 1 [Apis
           mellifera]
          Length = 664

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 82/284 (28%), Gaps = 39/284 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            +  D E    I+L   G         + L   G       ++D    P + Q   L++ 
Sbjct: 251 VVSFDCE---GINLGVKG--------QLTLVQIGTMSGQAYVFDLFACPNLVQAGGLQKL 299

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-----------PSAL 109
           LE+ DV  V H+   +   L   F + +       T                       L
Sbjct: 300 LEHKDVIKVIHDCRNDSVNLYRQFKIMLN--NVFDTQAAHAVLQFQETGKPVYKVKNVNL 357

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT-VT 168
             + +     S  ++E  + I R  +         R+             Y   DV  + 
Sbjct: 358 NTLCDHYGAPSNPLKEQLKNIYRNNQRYWCRRPLTRD----------MLIYASSDVLSLV 407

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +I+  +  L   E ++ + +         +  A      +   VE    D +       
Sbjct: 408 PQIYISMSRLIKPEVQVLFNELCEEQIQLHIKPAEVKARKKQRKVETEVADLKKRMEEAT 467

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETT--CQRVLSSNKKLT 270
             +      +++   +L+     ++  + +    R L   + + 
Sbjct: 468 TKNIVLSNREIRLLRYLDLTEDEKEKLKGSYKVARKLEKLENMG 511


>gi|229472461|gb|ACQ72745.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 57/275 (20%), Gaps = 99/275 (36%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRRLFKASPGQIMVGADLSGIELRMLAHYL-------ARYDEGRYADVLLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L                      
Sbjct: 63  ADKIGISRRAVKTVTYAFLYGAGDAKL---GKSFDAQLTESQAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L   +    E            
Sbjct: 104 -------------------KKGKEIRQAYMDAVPGLEKLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GYINLCDGRRCAVDGAH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMMNATKAGYD-----IVLTVHDE 631
           +Q  +  +    ++              +  VHDE
Sbjct: 157 LQGSAGVLAKRWLL-INHNNTRELCCSQLAFVHDE 190


>gi|294654453|ref|XP_456510.2| DEHA2A04334p [Debaryomyces hansenii CBS767]
 gi|199428893|emb|CAG84465.2| DEHA2A04334p [Debaryomyces hansenii]
          Length = 776

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 74/287 (25%), Gaps = 64/287 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + ID E              Y     ++        D    + D +      + L +  
Sbjct: 252 EIAIDLE-----------HHDYRSYYGIVCLMQISSRDQD-WIIDTLKLRDDLESLNKVF 299

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N D+  V H ++ +   L+    L I       T   +             + L     
Sbjct: 300 TNPDIVKVFHGAFMDIIWLQRDLGLYI--VSLFDTYHAS-------------KKLGFPKF 344

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
            +    E  A F   + ++    R +P           Y + D      I+ +L      
Sbjct: 345 SLAYLLETFANFKTSKKYQLADWRIRPLSP----PMLAYARSDTHFLLNIYDQLRNKL-- 398

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS---SSRCLEK 238
                 +D   N         + +   Q+             S + G VS    +   ++
Sbjct: 399 ------IDAGANR-----LQEVLYESRQVAKRRFEYTKFRPLSTSGGKVSCPVMANNPKE 447

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
             + + L+  +                     P    ++N R   ++
Sbjct: 448 PFSSILLQYNVPYHKK----------------PLIEALYNWRDALAK 478


>gi|188587656|ref|YP_001921717.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188497937|gb|ACD51073.1| exonuclease, RNase T and DNA polymerase III [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 204

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 35/126 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV------------------------CVILFAFG 36
           M  LF D ET S    + C +     D                          +  F+  
Sbjct: 1   MKLLFFDTETTSIKPGSICQLSYITVDASSKPQITTGKNFFFTVDEMNPSAQEIHGFSLE 60

Query: 37  --FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIH 91
             ++    + +    + ++P+  K+ +E     ++ HN  F+   LK        D    
Sbjct: 61  KLYELSEGQYF----EDLVPEFFKDFIEAD--FLIGHNVNFDIRFLKHELSLLGEDFLPK 114

Query: 92  RWICTL 97
              CT+
Sbjct: 115 HSFCTM 120


>gi|297538972|ref|YP_003674741.1| DNA-directed DNA polymerase [Methylotenera sp. 301]
 gi|297258319|gb|ADI30164.1| DNA-directed DNA polymerase [Methylotenera sp. 301]
          Length = 515

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 54/405 (13%), Positives = 106/405 (26%), Gaps = 77/405 (19%)

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K   GK+L     K ++ + L      + ++    F EY +       E ++    +   
Sbjct: 77  KFISGKKLDKETIKEKSIKALMKPYYTDIKDLDNYFEEYYRRIS-FELETYQLFSHMLFS 135

Query: 182 EQELWYLDQTI--ND-------------------RGYCVDVALAHTLNQIVDVERTKLDQ 220
             E   +                           RG   D  +     + +D +  +  +
Sbjct: 136 CWENMTVLAKSKGEWDRYIEVELPVFNLMTKVAVRGIKTDNKILREHKKNIDDDFFRELK 195

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +                 +   L         DLTE +   VL     +     +V    
Sbjct: 196 KFAIEYGLFFEVP-----IANVLHDILSDRGYDLTEMSVDFVLEFLPMVDNFGERVIAL- 249

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +  +S V     L     S  R+   +    ++ T R        QNL +         
Sbjct: 250 QKLQKSRV----ALANITLSKTRVCP-IAETHSTVTSRMYYKNPTVQNLAKRY------- 297

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLK 400
                                   R   IA   + L   D    E  ++A ++ ++   +
Sbjct: 298 ------------------------RDIFIADNDRTLSYVDYDQFEIGIMAALSKDKKLEE 333

Query: 401 AFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
              +  D+Y       F           R+I K + LA  Y        +     G +  
Sbjct: 334 -IYSNTDIYKKFSLEIFGDEGK------RSISKKLFLAFTYGMTHVNLLEAVKQHGGDKE 386

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
                       +++     +   +++   E+       G   ER
Sbjct: 387 VA------RLFFDQFAVFIEWRVGIEKLFLENGRISTLFGNNLER 425



 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 45/159 (28%), Gaps = 9/159 (5%)

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
             +                    G   +R                  L +A +Q   + +
Sbjct: 327 KDKKLEEIYSNTDIYKKFSLEIFGDEGKRSISKKLFLAFTYGMTHVNLLEAVKQHGGDKE 386

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                  +    +  +     L   L +GR          R+ +   + +  R       
Sbjct: 387 VARLFFDQFAVFIEWRVGIEKLF--LENGRISTLFGNNLERTGVGELSFKEKR------S 438

Query: 597 LTENIVQAVSRDILAEGMMNATK-AGYDIVLTVHDEIVC 634
              ++VQ     I  + ++  +K +  +I++ +HD ++ 
Sbjct: 439 CVSHVVQGTGSLIFKKALLELSKDSEIEILIPMHDAVLV 477


>gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 719

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA-RSNG--L 105
            + +     +    V  VAHN+ F+   L+       L  P    + TL+L+   +    
Sbjct: 594 PVLRAFSRFIGEESVL-VAHNAAFDMGFLRRAQARAGLAFP-QPVLDTLLLSVYLHDHSP 651

Query: 106 PSALKAVGEALKLSSQK 122
              L+ V E L +  QK
Sbjct: 652 DHTLEGVAERLGVEVQK 668


>gi|187466071|emb|CAQ51625.1| exosome component 10 [Mus musculus]
          Length = 727

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 311 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 367

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 368 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 423

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 424 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQ 466

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 467 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 501


>gi|66811680|ref|XP_640019.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|60468043|gb|EAL66053.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 390

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 55/203 (27%), Gaps = 25/203 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQVL 57
             + +D E    I++ K G         + L      +  + L+D      +       L
Sbjct: 185 KLIGLDIE---AIEMGKKG--------DISLVQISTPNGRIYLFDIIKMGANVTPFKYGL 233

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           KE LE+  +  V H+   +  +L   +   + +       +                   
Sbjct: 234 KEVLESVKILKVVHDCRRDSEILFHRY--QVALAHVYDVQIAHALVQKKIQGNIPIRRYG 291

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL------FGEYCKGDVTVTREI 171
            +           +  C          +   N  E W        F +Y   D      I
Sbjct: 292 FNELIDLYTSRKYSEICIDIKF--KVKQQFENQPEVWAKRPLPKDFIDYASLDAACLLPI 349

Query: 172 FKRLEPLSSKEQELWYLDQTIND 194
           +  ++P      +  +L    N+
Sbjct: 350 YYHIKPKLQSNFDRRFLKTHFNE 372


>gi|145638698|ref|ZP_01794307.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
 gi|145272293|gb|EDK12201.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittII]
 gi|309750190|gb|ADO80174.1| Ribonuclease D [Haemophilus influenzae R2866]
          Length = 380

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 77/272 (28%), Gaps = 46/272 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  Y     + L    +D   V L D        P      L 
Sbjct: 33  VALDTE--------FMRVSTYF--PKLGLIQL-YDGEHVSLIDPLAITDFSP--FIALLA 79

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-EALKLS 119
           N  V  V H+   +  V    F  D      I T ++AR  GL   + L  +  + L + 
Sbjct: 80  NPKVLKVLHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVE 137

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K       I R                          +Y  GDV     ++  LE   
Sbjct: 138 IDKGATRTNWIKRPLSNIQ-------------------LQYAAGDVWYLLPLYHILEKEL 178

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           +K      +            +A  H L +    +          L    +S  R L + 
Sbjct: 179 AKTPWEQAVRDDCELV-----LAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLAQW 233

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  + +E  L L  + ++     L    K  P
Sbjct: 234 RQNVAIERDLALSYIVKS---EHLWKVAKNNP 262


>gi|12856957|dbj|BAB30844.1| unnamed protein product [Mus musculus]
          Length = 705

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 289 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 345

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 346 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 401

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 402 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQ 444

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 445 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 479


>gi|27476016|ref|NP_775218.1| DNA polymerase2 [Pseudomonas phage PaP3]
 gi|27414446|gb|AAL85532.1| DNA polymerse2 [Pseudomonas phage PaP3]
          Length = 175

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 43/149 (28%), Gaps = 31/149 (20%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVL 99
           P ++        M +     +      +V HN   ++  VL+    + IP  R   TLV 
Sbjct: 40  PTQVVRGFRPEEM-ETFYRIIA-HAKFVVGHNILDYDNRVLEKLHGIVIPEERSYDTLVA 97

Query: 100 ARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           +R          +L A G  LK                C           +         
Sbjct: 98  SRLTWPDRPMGHSLGAWGRFLK----------------CHKGDFNDFSKFS--------E 133

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
              EYC  D  V+  +F  L  +     E
Sbjct: 134 EMFEYCLQDGVVSMALFNYLLKVLGMTWE 162


>gi|156121019|ref|NP_001095656.1| exosome component 10 [Bos taurus]
 gi|154757487|gb|AAI51675.1| EXOSC10 protein [Bos taurus]
 gi|296479174|gb|DAA21289.1| exosome component 10 [Bos taurus]
          Length = 702

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 63/214 (29%), Gaps = 25/214 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIAR 132
             +   L+  F   + +     T   AR   L   +L                   L+  
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDH-----------------LLKL 409

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-QELWYLDQT 191
           +C  E+++     +             Y + D      I+ ++     +   E     Q 
Sbjct: 410 YCSVESNKQYQLADWRIRPLP-EEMLSYARDDTHYLLYIYDKMRLELWERGNEQPTQLQV 468

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +  R   + +          +       ++ + L
Sbjct: 469 VWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502


>gi|86747524|ref|YP_484020.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
 gi|86570552|gb|ABD05109.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 231

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 44/189 (23%), Gaps = 39/189 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF--GFDDHPVELWDCVHDPVMPQVLK 58
           M  + +D ET     L    +        +             V       +  MP    
Sbjct: 1   MREIVLDTETTGLDPLRGDRLV------EIGCVEIYNRMPTGQVYHQYINPERDMPAEAF 54

Query: 59  -------EALENT---------------DVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                  E L +                D  +V HN+ F+       L       IP  R
Sbjct: 55  AVHGLSSEFLADKPVFAQVADAFIDFIGDAPLVIHNASFDIGFINAELARLSRAAIPRER 114

Query: 93  WICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNK 147
            + TL+LAR      +  L  +     + + +  +   L+                    
Sbjct: 115 LVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQL 174

Query: 148 PNHREAWRL 156
                    
Sbjct: 175 ILAEVPSER 183


>gi|73950874|ref|XP_535408.2| PREDICTED: similar to exosome component 10 isoform 1 [Canis
           familiaris]
          Length = 1012

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 63/214 (29%), Gaps = 25/214 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 438 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPTIVKVFHGA 494

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIAR 132
             +   L+  F   + +     T   AR   L   +L                   L+  
Sbjct: 495 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDH-----------------LLKL 535

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE-QELWYLDQT 191
           +C  E+++     +             Y + D      I+ ++     +   E     Q 
Sbjct: 536 YCSVESNKQYQLADWRIRPLP-EEMLNYARDDTHYLLYIYDKMRLELWERGNEQPVQLQV 594

Query: 192 INDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
           +  R   + +          +       ++ + L
Sbjct: 595 VWQRSRDICLKKFVKPLFTDESYLELYRKQKKHL 628


>gi|326912829|ref|XP_003202748.1| PREDICTED: DNA polymerase theta-like [Meleagris gallopavo]
          Length = 2152

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 625  VLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKRYR 674
            +L +HDE++ E  + D    + +    M +       + L  +      + 
Sbjct: 2097 ILQLHDELLYEVAEDDVIQVAQIVKHEMENAVK--LSVKLNVKVKIGPSWG 2145


>gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
 gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
          Length = 248

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 45/161 (27%), Gaps = 36/161 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-----------------------AFGF 37
           M  +  D ET     L      +  E   V L                        A   
Sbjct: 15  MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 70

Query: 38  DD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                 +L D      +     E +      +VAHN+ F+       L      +I    
Sbjct: 71  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEH 128

Query: 93  WICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
            + TL LAR      P++L A+ +   + +        L+ 
Sbjct: 129 IVDTLALARRKHPMGPNSLDALCKRYGIDNSHRTLHGALLD 169


>gi|46204778|ref|ZP_00049503.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 214

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 48/165 (29%), Gaps = 18/165 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D    L D +   +  +   + + +     V H++  +  ++       
Sbjct: 37  PKLCLIQMAGPDGFACLVDPLAKGLDLKPFLDLMADESTVKVFHSARQDLEII--WLLGG 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +  H +  T V A   G   +                  ++L+    K    +     + 
Sbjct: 95  LLPHPFFDTQVAAMVCGYGDS---------------VSYEQLVNDVAKARIDKSSRFTDW 139

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                +      Y   DVT    I++ L     +     +LD+ +
Sbjct: 140 SRRPLSDAQLA-YALSDVTHLVTIYQVLAAELVRTDRGLWLDEEM 183


>gi|219126108|ref|XP_002183306.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405062|gb|EEC45006.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 311

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 37/122 (30%), Gaps = 18/122 (14%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +VL   L N DV  V H +  +   L+  F L I       T+  AR+   P    +   
Sbjct: 203 EVLLPVLTNPDVVKVLHGADSDIAWLQRDFGLYI--VNLFDTMRAARALKFPR--ASYAY 258

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L+     +   K                 R  P          +Y   D     +I+ R
Sbjct: 259 VLQHYVDGLHADKS--------AQLADWRVRPLP------EALQQYAIQDTAYLLDIYDR 304

Query: 175 LE 176
           + 
Sbjct: 305 MR 306


>gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 317

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 44/139 (31%), Gaps = 25/139 (17%)

Query: 6   IDFETRSPID----------LTKCGICKYAEDVCVILFAFGFDDHP--------VELWDC 47
           +DFET               L         ED    L     D           VEL   
Sbjct: 9   VDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLIRVHRDIGAQWIHHISAVELIHA 68

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHR--WICTLVLARS 102
                + + L++ L       VAHN  F+   L         DIP++    +CT+ L+RS
Sbjct: 69  PEFEGIARELRDLLA--GRVFVAHNVAFDSKFLLSEYRRLGTDIPVNSHTMLCTMKLSRS 126

Query: 103 NGLPSALKAVGEALKLSSQ 121
                +L        + ++
Sbjct: 127 LIGVGSLADCCREFGIDNE 145


>gi|146421793|ref|XP_001486840.1| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 755

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/338 (9%), Positives = 81/338 (23%), Gaps = 69/338 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D E              Y   + ++        +    + D +       VL E  
Sbjct: 246 EIAVDLE-----------HHDYRSYLGIVCLMQISSREKD-WIIDTLKLRDSLVVLNEIF 293

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
            N ++  V H ++ +   L+      + +     T   ++  GLP  +L  + E    ++
Sbjct: 294 ANPNIVKVFHGAFMDIIWLQRDLG--LYVVSLFDTYHASKKLGLPRFSLAYLLE--NYAN 349

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +L     +                        Y + D      ++ +L     
Sbjct: 350 FKTSKKYQLADWRMRPLLG----------------PMLSYARSDTHFLLYVYDQLRNQL- 392

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEK 238
                                    + +Q +     +  Q  +                K
Sbjct: 393 -----------------------LSSGSQKMKEVLHESRQVAKRRFEFTRFRPTLVSGSK 429

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
           +   +             ++     +      P    ++  R   ++    + + LV  +
Sbjct: 430 VSCPIMAPNAKEP----YSSIMNQFNLPNHTRPIVEALYLWRDAKAK----ECDELVRYV 481

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
             +  L      L                +  R S   
Sbjct: 482 MPNQ-LLVNFSLLALPVDKETILRNPYITDQVRNSVDE 518


>gi|157826195|ref|YP_001493915.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
 gi|157800153|gb|ABV75407.1| DNA polymerase III subunit epsilon [Rickettsia akari str. Hartford]
          Length = 229

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 50/184 (27%), Gaps = 36/184 (19%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYAEDVCVILF-AFGFDDHPV 42
             + +D ET                       LT      Y      I F A+       
Sbjct: 5   REIILDTETTGLDPRQGHRIVEIAAIEMMNKVLTGRNFHFYINPERDIPFDAYRIHGISG 64

Query: 43  ELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFNLDIPIHR 92
           E        H   +     E + ++   +V HN+ F+          LK      + +  
Sbjct: 65  EFLKDKPLFH--TIADDFLEFIADS--KLVIHNAPFDIKFLNHELSLLKRAEIKLLELSN 120

Query: 93  WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPN 149
            I TLV+ARS        L A+ +  K+ +   +    L       E   E    R    
Sbjct: 121 AIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTGGRQSSF 180

Query: 150 HREA 153
               
Sbjct: 181 KMVD 184


>gi|157375657|ref|YP_001474257.1| ribonuclease D [Shewanella sediminis HAW-EB3]
 gi|157318031|gb|ABV37129.1| ribonuclease D [Shewanella sediminis HAW-EB3]
          Length = 369

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 73/269 (27%), Gaps = 45/269 (16%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           L +D E     T                   + L    +D   + L D +    +     
Sbjct: 26  LVLDTEFVRTRTYY---------------ARLGLIQ-AYDGKTLALIDPIAVGNL-SEFW 68

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L   ++T V H+   +  V     N      R   + + A   G    L         
Sbjct: 69  SLLTEPEITTVLHSCSEDLEVFAR--NGQCQPIRLFDSQIAASLCGFGHGL--------- 117

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K+ E   L     KGE+      R     +        Y   DV    E++ +L   
Sbjct: 118 GYAKLVEQ-TLNIALDKGESRTDWMKRPLSKAQ------LTYAANDVYYLYELYPQLIQK 170

Query: 179 SSKEQELWYLDQTIND----RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                 L ++ +        R    D+ LA+   +      ++    L+ L    +  + 
Sbjct: 171 LEDTDRLDWVFEEGERMTQGRLTPPDLELAYLKVKNAFQLSSQQLAYLKVLAKWRLKKAL 230

Query: 235 CLEKLKTWLFLETGLH-LEDLTETTCQRV 262
             +    ++  +  L  L          +
Sbjct: 231 SRDLAVGFVVKDHALIGLAKKQPKNTNEL 259


>gi|190344443|gb|EDK36119.2| hypothetical protein PGUG_00217 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 755

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 60/237 (25%), Gaps = 58/237 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D E              Y   + ++        +    + D +       VL E  
Sbjct: 246 EIAVDLE-----------HHDYRSYLGIVCLMQISSREKD-WIIDTLKLRDSLVVLNEIF 293

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
            N ++  V H ++ +   L+      + +     T   ++  GLP  +L  + E    ++
Sbjct: 294 ANPNIVKVFHGAFMDIIWLQRDLG--LYVVSLFDTYHASKKLGLPRFSLAYLLE--NYAN 349

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +L     +  +                     Y + D      ++ +L     
Sbjct: 350 FKTSKKYQLADWRMRPLSG----------------PMLSYARSDTHFLLYVYDQLRNQL- 392

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
                                    + +Q +     +  Q  +            + 
Sbjct: 393 -----------------------LSSGSQKMKEVLHESRQVAKRRFEFTRFRPTSVS 426


>gi|254439069|ref|ZP_05052563.1| ribonuclease D [Octadecabacter antarcticus 307]
 gi|198254515|gb|EDY78829.1| ribonuclease D [Octadecabacter antarcticus 307]
          Length = 395

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 75/273 (27%), Gaps = 46/273 (16%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMP 54
            + +D E     T                   + L    +    D    L D + + +  
Sbjct: 32  YVTVDTEFLRERTYYS---------------KLCLIQLAYMGDGDDDAVLLDPLANGLDL 76

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L +  ++ +V  V H +  +  +     +  I       T V A   G        GE
Sbjct: 77  APLYDLFKDENVVKVFHAARQDLEIF--FVDQGIIPKPLFDTQVAAMVCGF-------GE 127

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                       + L+ +  K    +     +      +      Y   DVT  R I++ 
Sbjct: 128 QAGY--------ETLVRKIAKDNVDKSSRFTDWSRRPLSDAQ-KTYALADVTHLRVIYEY 178

Query: 175 LEPLSSKEQELWYL---DQTINDR-GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           L     K     ++      +ND   Y  D   A    +       K    +  L     
Sbjct: 179 LSAELDKSGRKKWVAEEMAVLNDPATYQADPDNAWKRVKT-RTSSGKFLSIVRELARFRE 237

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
             ++     +  +F +  L     T+ T +  L
Sbjct: 238 IHAKTRNIPRNRVFKDDALVEIASTKPTSEDDL 270


>gi|91202954|emb|CAJ72593.1| strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 204

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 40/195 (20%)

Query: 1   MATLFIDFET-----------------------RSPIDLTKCGICKYAEDVCVILFAFG- 36
           M  + IDFET                       R+   +    +        +   +   
Sbjct: 1   MKCVAIDFETANAKRSSVCSLGLAIIEEQTIVKRTSWLIRPPELYFDPFSTYIHGISAKD 60

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRW 93
            +D P           +   +   LE     +VAHN+ F+ +VL      + +  P   +
Sbjct: 61  VEDKPEFY-------QLWDEIFPFLE--GSYLVAHNASFDMSVLCCILDVYKIPYPPLNY 111

Query: 94  ICTLVLARSNGL---PSALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPN 149
            CTL +A+         AL  +   L++       E   +         +  L   N   
Sbjct: 112 FCTLAIAKRVWPGLLGYALNKISRYLEIEFKHHDAEEDAVACAKILLHAYNELGVNNLEE 171

Query: 150 HREAWRLFGEYCKGD 164
             +  +L  +Y   D
Sbjct: 172 LAKKIKLPEKYLLPD 186


>gi|300173608|ref|YP_003772774.1| DNA-directed DNA polymerase III subunit epsilon [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887987|emb|CBL91955.1| DNA-directed DNA polymerase III, epsilon chain (Putative)
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 177

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 35/149 (23%)

Query: 1   MATLFIDFET-----RSPIDLT-----------------KCGICKYAEDVCVILFAFGFD 38
           M  + +DFET      S + +                  K      + +  V        
Sbjct: 1   MNFIAMDFETANHEKYSAVSIAIAIVRDNQVVDKFYSLIKPETYFSSRNTAVHGL----- 55

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWIC 95
               ++ D    P + Q++     + +  +VAHN+ F+  +LK   A + ++ P +  + 
Sbjct: 56  -RESDVIDAPKFPEIWQIISPLFRD-NKLVVAHNAAFDNNILKGTLAHYGIEEPHYMLLD 113

Query: 96  TLVLARSNGL---PSALKAVGEALKLSSQ 121
           T+  +R          L  V   L ++  
Sbjct: 114 TVRTSRKLFPKFENHKLNTVANNLGITLD 142


>gi|154496866|ref|ZP_02035562.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
 gi|150273824|gb|EDN00937.1| hypothetical protein BACCAP_01159 [Bacteroides capillosus ATCC
           29799]
          Length = 191

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 27/154 (17%)

Query: 2   ATLFIDFET-RSPIDLTKCGICKYAEDVCVIL--------------FAFGFDDHPVELWD 46
             +  D ET     D          E   +                F         E+  
Sbjct: 4   RYIAFDVETPNYANDRMSAIGITVVEAGEIAGEYYTLVNPEQRFDRFNIALTGITPEMV- 62

Query: 47  CVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKAC---FNL-DIPIHRWICTLVLA 100
               P  P++ +E   L ++ +  +AHN+ F+ +VL  C   + +   P  R+ CT  ++
Sbjct: 63  -ADKPTFPELWREIGPLMDSGLL-IAHNAPFDMSVLAKCLRDYGICWHPTVRYACTCQMS 120

Query: 101 RSN---GLPSALKAVGEALKLSSQKMEEGKELIA 131
           R          L  + + L L       G + +A
Sbjct: 121 RRLLPQLPNHKLNTLSDYLGLELDHHHAGSDSMA 154


>gi|255953429|ref|XP_002567467.1| Pc21g04210 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589178|emb|CAP95318.1| Pc21g04210 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1142

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/330 (12%), Positives = 80/330 (24%), Gaps = 75/330 (22%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ + A  G   V AD+   E
Sbjct: 670 PQVIPMGTITRRAVENTWLTASNAKAN------RVGSELKAMIKAPPGYSFVGADVDSQE 723

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                  +++        +       R   KV      Y
Sbjct: 724 L-WIASLVGDASFQIHGGNAIGFMCLEGSKAEGTDLHSRSASILGISRNDAKVFNYGRIY 782

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +L          +  +E +      R + E        + F+  
Sbjct: 783 GAGVKFAATLLRQFNPSLTEKQTQETAKNLYKETKGTRTSRRLLSETPFWRGGTESFVFN 842

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E      R +   +                      A  RR +        +      
Sbjct: 843 KLEEFADQERPRTPAL----------------GAGITEALMRRFINKGSFMTSR------ 880

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 881 ------------------------------------INWAIQSSGVDYLHLLIVSMDYLI 904

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                   + +TVHDEI     D D + A+
Sbjct: 905 RQYNIKARLAITVHDEIRYLVKDEDRYRAA 934


>gi|198421501|ref|XP_002119853.1| PREDICTED: similar to exosome component 10, partial [Ciona
           intestinalis]
          Length = 647

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 34/176 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E  S           Y    C++  +    D    + D +       +L +   
Sbjct: 85  EIAVDLEAHSYRS--------YQGITCLMQLSTRTKD---YIVDTIALRAELNILNQVFA 133

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSS 120
           N ++  V H +  +   L+  F + +       T   AR+ GL   +L  +      + +
Sbjct: 134 NPNIIKVFHGADSDIIWLQRDFGIYV--VNLFDTGQAARALGLQRHSLDYLLTHYCNVQA 191

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            K  +  +                R  P      +    Y +GD      ++  + 
Sbjct: 192 DKKYQLADW-------------RIRPLP------KEMLLYAQGDTHYLLYVYDMMR 228


>gi|39973915|ref|XP_368348.1| hypothetical protein MGG_00896 [Magnaporthe oryzae 70-15]
 gi|145018155|gb|EDK02434.1| hypothetical protein MGG_00896 [Magnaporthe oryzae 70-15]
          Length = 854

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/178 (10%), Positives = 43/178 (24%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E     D              + L      +    +          ++L E  
Sbjct: 277 KEIAVDLE---HHDFRTY-------HGLLSLMQISTREKDWIVDTLKPWRQQLEILNEVF 326

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H ++ +   L+      + +     T   A +   P       ++L    +
Sbjct: 327 ADPSIVKVFHGAFMDIVWLQRDLG--LYVVGLFDTFHAAEALMYP------SKSLAYLLK 378

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           K  + +                 R  P           Y + D      ++  +    
Sbjct: 379 KFVDFEADKRY-----QTADWRIRPLP------EEMLYYARSDTHYLLYVYDMMRNEL 425


>gi|194376518|dbj|BAG57405.1| unnamed protein product [Homo sapiens]
          Length = 529

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 62/230 (26%), Gaps = 38/230 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK---------- 181
                        R  P           Y + D      I+ ++     +          
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQ 467

Query: 182 --EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
              Q    +      +    D +      +      T+     + L    
Sbjct: 468 VVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWR 517


>gi|148682875|gb|EDL14822.1| exosome component 10, isoform CRA_a [Mus musculus]
          Length = 916

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 315 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 371

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 372 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 427

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 428 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQ 470

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 471 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 505


>gi|84684641|ref|ZP_01012542.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Maritimibacter alkaliphilus HTCC2654]
 gi|84667620|gb|EAQ14089.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Rhodobacterales bacterium HTCC2654]
          Length = 230

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 34/160 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET       K G  +  E   V LF                      AF   
Sbjct: 1   MREIVLDTETTGFDP--KTG-DRMVEIGAVELFNHMPTGRTYHQYINPQRDMPEGAFAVH 57

Query: 39  D-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRW 93
                 L D      +     E + +  +  V HN+ F+   L A         IP+ + 
Sbjct: 58  GLSEEFLKDYPVFADIADAFLEFIGDAKL--VIHNASFDVPFLNAELGWCKRRQIPMDQS 115

Query: 94  ICTLVLAR--SNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           I TL++AR    G  ++L A+     + +        L+ 
Sbjct: 116 IDTLLIARKKFPGAGNSLDALCRRFGIDNSHRTLHGALLD 155


>gi|311899062|dbj|BAJ31470.1| putative DNA polymerase III subunit epsilon [Kitasatospora setae
           KM-6054]
          Length = 329

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 24/135 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCVI-----LFAFGFDDHPVELWDCVHD------- 50
           +D ET        +   G+ +   D  +      L     D  PV +     +       
Sbjct: 28  VDVETTGLGRSDRVISAGVYQLDPDGEITDHWYTLVNPQRDPGPVWIHGLTSEVLAGAPT 87

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP 106
            P +     E L +    +VAHN+ F+  ++   F    L  P+ + +CT+VLAR   LP
Sbjct: 88  FPEVAAEFAERLRD--RVLVAHNALFDWNMISREFSRAGLRAPVEQRLCTMVLARDLRLP 145

Query: 107 ---SALKAVGEALKL 118
                L ++     +
Sbjct: 146 LPNGKLSSLAAHFDV 160


>gi|148682876|gb|EDL14823.1| exosome component 10, isoform CRA_b [Mus musculus]
          Length = 864

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 314 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 370

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 371 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 426

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 427 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQ 469

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 470 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 504


>gi|20381286|gb|AAH27840.1| Exosc10 protein [Mus musculus]
 gi|123226356|emb|CAM23944.1| exosome component 10 [Mus musculus]
 gi|123248912|emb|CAM21194.1| exosome component 10 [Mus musculus]
          Length = 862

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQ 467

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 468 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502


>gi|114332140|ref|YP_748362.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
 gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
          Length = 234

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 53/188 (28%), Gaps = 44/188 (23%)

Query: 1   MATLFIDFETRSPIDL------------------------TKCGICKYAEDVCVILFAFG 36
           M  +F+D ET                                    + +++  + +    
Sbjct: 1   MRYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNPGRESDEGALRVHGLS 60

Query: 37  ---FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI-- 90
                D P           +     E +E+ ++ I  HN+ F+   +      + +    
Sbjct: 61  REFLQDKPAF-------QEICSEFLEFIEDAEILI--HNAPFDVGFINRELGLIRLEPMH 111

Query: 91  ---HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
               + + TL+LA+         L A+ E  ++ +        L+      E +  +   
Sbjct: 112 NYCLQIVDTLMLAKELHPGKRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMTRG 171

Query: 146 NKPNHREA 153
            +    E 
Sbjct: 172 QESLLMEP 179


>gi|240136987|ref|YP_002961456.1| hypothetical protein MexAM1_META1p0217 [Methylobacterium extorquens
           AM1]
 gi|240006953|gb|ACS38179.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens AM1]
          Length = 297

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 21/149 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LF---AFGFDDHPVELW-----D 46
           M  + IDFET +    + C +   + E   V+     L       F    + +      D
Sbjct: 1   MKVVAIDFETANERRDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGILPAD 60

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
               P  P+V+ E L + +   ++AHN+ F+  VL    A +   +P     CTL +AR 
Sbjct: 61  VRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIARR 120

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKE 128
                    L  V   L +  +  + G++
Sbjct: 121 VFPDPAGHGLAKVASRLGIRFEHHDAGED 149


>gi|222618694|gb|EEE54826.1| hypothetical protein OsJ_02264 [Oryza sativa Japonica Group]
          Length = 504

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 24/205 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G         ++  AF      V L D       + +  K AL
Sbjct: 221 VIGFDCE---GVDLCRHGALC------IMQIAF---PDAVYLVDAIEGGKELIEACKPAL 268

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALK 117
           E+  VT V H+   +   L   F   I +H  + T +         G           + 
Sbjct: 269 ESEYVTKVIHDCKRDSEAL--YFQFGIKLHNVMDTQIAYSLLEEQEGKKRGYDEYISFVS 326

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           L +     G   +A   K E    L    N   HR    +       DV     I +++ 
Sbjct: 327 LLADPRYCG---MAYPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSIHEKMM 383

Query: 177 PLS-SKEQELWYLDQTINDRGYCVD 200
                       +   +  R +C++
Sbjct: 384 EKLSKVSLWRLSVRSELYCRCFCIN 408


>gi|145628753|ref|ZP_01784553.1| ribonuclease D [Haemophilus influenzae 22.1-21]
 gi|144979223|gb|EDJ88909.1| ribonuclease D [Haemophilus influenzae 22.1-21]
          Length = 399

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 97/332 (29%), Gaps = 65/332 (19%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLK 58
           M + + +D E           +  Y     + L    +D   V L D        P    
Sbjct: 48  MKSAVALDTE--------FMRVSTYF--PKLGLIQL-YDGERVSLVDPLAITDFSP--FV 94

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-EA 115
             L N  V  + H+   +  V    F  D      I T ++AR  GL   + L  +  + 
Sbjct: 95  ALLSNPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQY 152

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +   K       I R                       +  +Y  GDV     ++  L
Sbjct: 153 LNVEIDKGATRTNWIKRPLS-------------------DIQLQYAAGDVWYLLPLYHIL 193

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           E   +K      +            +A  H L +    +          L    +S  R 
Sbjct: 194 EKELAKTPWEQAVRDDCELV-----LAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRV 248

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA------------------IQVF 277
           L + +  + +E  L L  + ++     L    K  P+                    ++ 
Sbjct: 249 LAQWRQNVAIERDLALSYIVKS---EHLWKVAKNNPRNTSEMLEMGLTENEVRVRGKKIL 305

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
               +A R +       +E ++ D R + T++
Sbjct: 306 QLLSQARRISSNDYPKSIERISEDPRYKKTIR 337


>gi|10176710|dbj|BAB09932.1| nucleolar protein-like [Arabidopsis thaliana]
          Length = 834

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 19/126 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+E  ++     V H +  +   L+  F + +       T   +R   L           
Sbjct: 288 LREIFKDPKKKKVMHGADRDIIWLQRDFGIYV--CNLFDTGQASRVLNLERN-------- 337

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + L+  FC    ++   + +             Y + D      I+  ++
Sbjct: 338 --------SLEFLLQHFCGVTANKEYQNADWRIRPLP-EEMTRYAREDTHYLLYIYDLIK 388

Query: 177 PLSSKE 182
               + 
Sbjct: 389 LELQRM 394


>gi|187466046|emb|CAQ52093.1| exosome component 10 [Mus musculus]
 gi|187466070|emb|CAQ51624.1| exosome component 10 [Mus musculus]
          Length = 861

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 311 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 367

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 368 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 423

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 424 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQ 466

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 467 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 501


>gi|20071218|gb|AAH27326.1| Exosome component 10 [Mus musculus]
          Length = 887

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQ 467

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 468 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502


>gi|323701749|ref|ZP_08113420.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533285|gb|EGB23153.1| DnaQ family exonuclease/DinG family helicase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 930

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 52/151 (34%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD----------CVHDPVM 53
           + +D ET         G+  +++D  +I          V++ D                +
Sbjct: 6   VALDLETT--------GLDCWSDD--IIEIGM------VKVIDGQERDFFQSLVRPGGPL 49

Query: 54  PQVLKEA--LENTD----------VTIV----------AHNSYFERTVLKACFNLDIPIH 91
           P  +K+   L++ D          +  +           HN  F+R  L A     +P +
Sbjct: 50  PVKIKQLTGLKDDDFQSAPWFQTIIPKILTFIGDLPLVGHNIKFDRDFLAAACGHQLP-N 108

Query: 92  RWICTLVLARSN---GLPSALKAVGEALKLS 119
               TL LAR          L  + +   + 
Sbjct: 109 DLYDTLELARILQPSAPSHRLGELCKIAGVE 139


>gi|255261512|ref|ZP_05340854.1| ribonuclease D [Thalassiobium sp. R2A62]
 gi|255103847|gb|EET46521.1| ribonuclease D [Thalassiobium sp. R2A62]
          Length = 385

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 41/194 (21%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMP 54
            + +D E     T                   + L    +    D    L D + D +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAYPGEGDENAVLVDPLEDGLSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L +   + +V  V H +  +  +     +  I       T V A   G        GE
Sbjct: 67  ASLYDLFRDPNVVKVFHAARQDLEIF--FVDEGIIPAPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ +  K    +     +      +     +Y  GDVT  REI++ 
Sbjct: 118 QVGY--------ETLVRKIAKAPLDKSSRFTDWSRRPLSDAQ-KKYALGDVTYLREIYEF 168

Query: 175 LEPLSSKEQELWYL 188
           L    +K     ++
Sbjct: 169 LADKLAKNNRAKWV 182


>gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis]
 gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis]
          Length = 552

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 22/151 (14%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           V L      DH   L D +       +L E+  N ++  V H +  +   L+  F + + 
Sbjct: 288 VCLMQISTRDHD-FLVDTLELRNDLHLLNESFTNPNILKVFHGADMDVGWLQRDFGIYV- 345

Query: 90  IHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                 T   +R   L   +L                   L+ +FC     +     +  
Sbjct: 346 -VNMFDTGQASRVLALERFSLAF-----------------LLKKFCGVTADKQYQLADWR 387

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                      Y + D      I  RL    
Sbjct: 388 IRPLP-EEMIRYAREDTHYLLYIHDRLRNEL 417


>gi|17365997|sp|Q9QYV8|DPOG1_RAT RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            AltName: Full=PolG-alpha
 gi|5912568|emb|CAB56206.1| DNA polymerase gamma [Rattus norvegicus]
 gi|149057256|gb|EDM08579.1| polymerase (DNA directed), gamma, isoform CRA_a [Rattus norvegicus]
 gi|149057257|gb|EDM08580.1| polymerase (DNA directed), gamma, isoform CRA_a [Rattus norvegicus]
          Length = 1216

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/398 (11%), Positives = 100/398 (25%), Gaps = 44/398 (11%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R                    PQ + 
Sbjct: 770  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRHPSF------DEESHYGAILPQVVT 823

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 824  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAA 877

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   KV      Y  G  
Sbjct: 878  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKVFNYGRIYGAGQS 937

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +++       L+      K        +    +            +      T     
Sbjct: 938  FAERLLMQFNHRLSRQEAADKAQQMYAVTKGLRRYRLSDDGEWLVKQLNVPVDRTE---- 993

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
               W        +   ++ +   +     K  +  +R        +       + +    
Sbjct: 994  -DGWVSL-----QDLRKIRREASRKSRWKKWEVVTERAWTGGTESEMFNKLESIAMSDTP 1047

Query: 567  SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNATKAGY- 622
                     +R+   +  +       +       +VQ+ + D   ++   M    +    
Sbjct: 1048 RTPVLGCCISRALEPSVVQGE-----FMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAI 1102

Query: 623  --DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
                 +++HDE+     + D + A+       +L   M
Sbjct: 1103 DGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1140


>gi|16758292|ref|NP_445980.1| DNA polymerase subunit gamma-1 [Rattus norvegicus]
 gi|5912570|emb|CAB56207.1| DNA polymerase gamma [Rattus norvegicus]
          Length = 1216

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/398 (11%), Positives = 100/398 (25%), Gaps = 44/398 (11%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R                    PQ + 
Sbjct: 770  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRHPSF------DEESHYGAILPQVVT 823

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 824  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAA 877

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   KV      Y  G  
Sbjct: 878  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKVFNYGRIYGAGQS 937

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +++       L+      K        +    +            +      T     
Sbjct: 938  FAERLLMQFNHRLSRQEAADKAQQMYAVTKGLRRYRLSDDGEWLVKQLNVPVDRTE---- 993

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
               W        +   ++ +   +     K  +  +R        +       + +    
Sbjct: 994  -DGWVSL-----QDLRKIRREASRKSRWKKWEVVTERAWTGGTESEMFNKLESIAMSDTP 1047

Query: 567  SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNATKAGY- 622
                     +R+   +  +       +       +VQ+ + D   ++   M    +    
Sbjct: 1048 RTPVLGCCISRALEPSVVQGE-----FMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAI 1102

Query: 623  --DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
                 +++HDE+     + D + A+       +L   M
Sbjct: 1103 DGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1140


>gi|297739148|emb|CBI28799.3| unnamed protein product [Vitis vinifera]
          Length = 935

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 56/223 (25%), Gaps = 40/223 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E  S                   L      +    L D +       VL+   
Sbjct: 133 RVFAVDTEQHSLRSFLGFTA----------LIQISTQNED-YLVDTIALHDTLDVLQPVF 181

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +  V H +  +   L+   +  I +     T                 +A ++ S+
Sbjct: 182 ANPSICKVFHGADNDVLWLQR--DFHIYVVNLFDT----------------AKACEVLSK 223

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
             +    L+  +C   T++ L   +      +     EY + D      I   L     +
Sbjct: 224 PQKSLAYLLETYCGVATNKLLQREDWRQRPLSVE-MLEYAQTDAHYLLYIANCLIAELRQ 282

Query: 182 EQELWYLDQTINDRGYCVDVA--LAHTLNQIVDVERTKLDQEL 222
                       +     D    +     +   V      +E+
Sbjct: 283 H--------DSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEI 317


>gi|227116266|ref|NP_057908.2| exosome component 10 [Mus musculus]
 gi|123226357|emb|CAM23945.1| exosome component 10 [Mus musculus]
 gi|123248913|emb|CAM21195.1| exosome component 10 [Mus musculus]
          Length = 887

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQ 467

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 468 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502


>gi|8928261|sp|P56960|EXOSX_MOUSE RecName: Full=Exosome component 10; AltName: Full=Autoantigen
           PM/Scl 2 homolog; AltName: Full=Polymyositis/scleroderma
           autoantigen 2 homolog
 gi|6018165|gb|AAF01779.1|AF091392_1 P100 polymyositis-scleroderma overlap syndrome associated
           autoantigen homolog [Mus musculus]
 gi|74184429|dbj|BAE25741.1| unnamed protein product [Mus musculus]
 gi|148682877|gb|EDL14824.1| exosome component 10, isoform CRA_c [Mus musculus]
          Length = 887

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQ 467

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 468 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502


>gi|251777997|ref|ZP_04820917.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082312|gb|EES48202.1| putative exonuclease [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 974

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 16/189 (8%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--- 105
           H   + + L   LE+  + ++ HN  FER  L     +    ++   ++ L+        
Sbjct: 75  HLEDIKKELLVFLED--LPLICHNGGFERKFLSYH--IPEIKNQIFDSMELSAILEPWRK 130

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              L ++ +++ +   K E  + L       +    L  R         +    Y   D 
Sbjct: 131 EYNLDSLIKSITIL-DKDEFHRGLEDSIDTLKVVNSLLCREWIREESKKKNKSLYNIIDK 189

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                 +   +    K      +   I D  Y   V+      Q V ++R  ++ E    
Sbjct: 190 DYEFLKYWEWKEYLLK-----PILFNIEDYPY---VSYEENKRQDVKLKRIPIEYEKYED 241

Query: 226 TYGLVSSSR 234
                    
Sbjct: 242 LLINEEIWN 250


>gi|146340329|ref|YP_001205377.1| ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278]
 gi|146193135|emb|CAL77147.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. ORS278]
          Length = 389

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 38/153 (24%), Gaps = 18/153 (11%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
               + D + + +  +   E + N  V  V H +  +  ++     +    H    T V 
Sbjct: 55  DEAVVIDALAEGIDLKAFFELMANEKVLKVFHAARQDIEIIWHRAGIV--PHPIFDTQVA 112

Query: 100 ARSNGLPSA--LKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           A   G   +     + E +      K     +                R     +  +  
Sbjct: 113 AMVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSR-------------RPLTKEQAHYAE 159

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
                  DV    +   +    S    E   + 
Sbjct: 160 ADVTHLRDVFAALDTDLKKRGRSDWVSEEMEIL 192


>gi|118340523|gb|ABK80573.1| putative ribonuclease D [uncultured marine Nitrospinaceae
           bacterium]
          Length = 386

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 65/238 (27%), Gaps = 25/238 (10%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L   G  +H   +       + P  L E L++     V H +  +  +L       IP  
Sbjct: 40  LIQVGGGEHFAAIDPIALPDMTP--LLELLKDPTKVKVFHAARQDLEILVRFCGQVIPP- 96

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T + A   G  + +       K   +K+ + +       +  +             
Sbjct: 97  -IFDTQIAAALVGWGTQISFAKIVYKALGKKIHKSETYTDWCRRPLSDSQ---------- 145

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV-----DVALAHT 206
                  EY   DV     ++ +L     K   L ++   +N           D      
Sbjct: 146 ------IEYAIDDVRYLMPVYNKLIERLKKMGRLDWVQGEVNAWEDPKTFALPDPYQRFM 199

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
             + +   R +    L+ +       +   + L   +  +  L           + LS
Sbjct: 200 KIKNLRSLRPRNLAVLQEIAAWREGEAVKRDCLAKAIIRDETLLEIARKAPRDAKTLS 257


>gi|261327471|emb|CBH10446.1| ribosomal RNA processing protein 6, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 738

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/393 (11%), Positives = 118/393 (30%), Gaps = 49/393 (12%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           ET   +DL       Y    C++  +    D    + DC+       ++       ++  
Sbjct: 265 ETEIAVDLEHHDFYSYQGFTCLMQISTRTQD---FIVDCLKVRANMYLMAPVFLQPNIVK 321

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           V H +  +   L+  F L I       T +  ++  +P +L                   
Sbjct: 322 VFHGAREDVRWLQKDFGLYI--VNLFDTSIALQNLHMPHSLAFA---------------- 363

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP----------- 177
            +  FC+ + ++     +             Y + D      ++ RL+            
Sbjct: 364 -VDHFCQVKLNKKYQTADWRVRPIP-AEMVSYAQQDTHFLLYVYDRLKQLLLNCEARASV 421

Query: 178 --LSSKEQELWYLDQTINDRGYCVDVALA--HTLNQIVDVERTKLDQELESLTYGLVSSS 233
             +     +   L          +D  +     L + +    +   Q    +      ++
Sbjct: 422 GNMLLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSSSQLQVAREIFNWRDMAA 481

Query: 234 RCLEKL-KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           R  +      + +   L +     T+   VL     ++          ++  + A+   +
Sbjct: 482 READDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRTNVMKLLQIVKDAIGSAD 541

Query: 293 TLVEAMNSDGRLRGTLQFLGASRT----GRWSGCVFPPQNLPRPSRSHEELDQIITHLPT 348
           +L +  N D + +       A R        +G +     + + + +   ++     + T
Sbjct: 542 SLKDGANGDVKPKPLPNVGVALRYMGVHRSMTGTLPS---IEQRADTAFTVEDTHVVVRT 598

Query: 349 SITSDPDPLQIISDCVRS---CVIASEGKKLVV 378
             ++  + ++ ++  +R      IA  G  +V 
Sbjct: 599 EPSAWFETMRNVAAILRRKPYYPIALPGHDVVT 631


>gi|193697404|ref|XP_001951643.1| PREDICTED: exosome component 10-like [Acyrthosiphon pisum]
          Length = 739

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 49/183 (26%), Gaps = 34/183 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L ID E  S          +  +    +       +    + D ++      VL E  
Sbjct: 229 NELAIDLEAHS---------YRTYQGFTCL-MQISTRNAD-YIIDTLYLRDKLHVLNEIF 277

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
            N  V  V H +  +   L+      + +     T   A+        L+ + +    + 
Sbjct: 278 TNPAVVKVFHGADSDIPWLQRDLG--LYVVNMFDTYQAAKILNFSRKGLEFLLKHYCNVD 335

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R +P   E       Y + D      ++  ++   
Sbjct: 336 ADKTFQLYDW---------------RTRPLSTE----AIFYARCDTHYLLYVYDMIKKDL 376

Query: 180 SKE 182
              
Sbjct: 377 MAM 379


>gi|187466045|emb|CAQ52092.1| exosome component 10 [Mus musculus]
 gi|187466069|emb|CAQ51623.1| exosome component 10 [Mus musculus]
          Length = 886

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 311 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 367

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 368 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 423

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 424 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQ 466

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 467 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 501


>gi|56698700|ref|YP_169077.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3]
 gi|56680437|gb|AAV97103.1| DNA polymerase III, epsilon subunit [Ruegeria pomeroyi DSS-3]
          Length = 241

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 41/159 (25%)

Query: 1   MATLFIDFETRSPID-----LTKCGI-------------CKY--------AEDVCVILFA 34
           M  + +D ET          + + G               +Y        AE   V    
Sbjct: 1   MREIVLDTETTGFDPETGDRIVEIGAVELWNHIATGNTYHQYINPERMMPAEAFGVHGIG 60

Query: 35  FGF-----DDHPVELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACF 84
                      P ++   + D  +   + +A  +   D  +V HN+ F+   L       
Sbjct: 61  PDILEPPQQPEPGQV--TLRDKPVFAKVGQAFRDFVADSHLVIHNASFDMKFLNAELRWM 118

Query: 85  NL-DIPIHRWICTLVLARSN--GLPSALKAVGEALKLSS 120
            L +IP  R I TL +AR    G P+ L A+     + +
Sbjct: 119 GLPEIPFDRAIDTLGMARRKFPGSPATLDALCRRFGIDN 157


>gi|225447009|ref|XP_002268685.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 936

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 56/223 (25%), Gaps = 40/223 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E  S                   L      +    L D +       VL+   
Sbjct: 133 RVFAVDTEQHSLRSFLGFTA----------LIQISTQNED-YLVDTIALHDTLDVLQPVF 181

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +  V H +  +   L+   +  I +     T                 +A ++ S+
Sbjct: 182 ANPSICKVFHGADNDVLWLQR--DFHIYVVNLFDT----------------AKACEVLSK 223

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
             +    L+  +C   T++ L   +      +     EY + D      I   L     +
Sbjct: 224 PQKSLAYLLETYCGVATNKLLQREDWRQRPLSVE-MLEYAQTDAHYLLYIANCLIAELRQ 282

Query: 182 EQELWYLDQTINDRGYCVDVA--LAHTLNQIVDVERTKLDQEL 222
                       +     D    +     +   V      +E+
Sbjct: 283 H--------DSENSCCPDDKLRFVLEASRRSNTVCLQLYIKEI 317


>gi|255647529|gb|ACU24228.1| unknown [Glycine max]
          Length = 345

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 23/191 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G                F D  V L D       +    K AL
Sbjct: 61  VIGFDCE---GVDLCRKGTLCVM--------QLAFPDA-VYLVDAIEGGEELIIACKPAL 108

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL----K 117
           E+  +T V H+   +   L   F   I ++  + T +           K + +       
Sbjct: 109 ESNYITKVIHDCKRDSEAL--YFQFGIKLNNAVDTQIAYSLIEEQEGRKRLRDDYISFVG 166

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           L +     G   I+   K E    L        HR            DV     I++++ 
Sbjct: 167 LLADPRYCG---ISYDEKEEVRVLLRQDPKFWTHRPLSEQMIRAAADDVRFLLYIYRQMM 223

Query: 177 PLSSKEQELWY 187
              ++    + 
Sbjct: 224 EKLNERSLWYL 234


>gi|192288734|ref|YP_001989339.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           TIE-1]
 gi|192282483|gb|ACE98863.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 232

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 45/191 (23%), Gaps = 39/191 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF--GFDDHPVELWDCVHDPVMPQVLK 58
           M  + +D ET     L    +        +                     +  MP    
Sbjct: 1   MREIVLDTETTGLDPLRGDRLV------EIGCVEIFNRMPTGRTYHQYLNPERDMPAEAF 54

Query: 59  -------EALENT---------------DVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                  E L +                D  +V HN+ F+       L       +P  R
Sbjct: 55  AVHGLSSEFLADKPLFAHVADEFLEFIGDAPLVIHNASFDIGFINAELSRLSRAPVPRDR 114

Query: 93  WICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNK 147
            + TL+LAR      +  L  +     + + +  +   L+                    
Sbjct: 115 LVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQL 174

Query: 148 PNHREAWRLFG 158
                   + G
Sbjct: 175 ILADVPAEVVG 185


>gi|124023956|ref|YP_001018263.1| ribonuclease D [Prochlorococcus marinus str. MIT 9303]
 gi|123964242|gb|ABM78998.1| putative ribonuclease D [Prochlorococcus marinus str. MIT 9303]
          Length = 212

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 46/171 (26%), Gaps = 24/171 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E          G+    +   + L         V              L++ +E 
Sbjct: 32  IAVDTE--------AMGLIHGRD--RLCLVQICDPADNVACVRIGLGQTSAPRLQKLMEA 81

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEAL-KLS 119
           T V  V H + F+   L     L I +    CT V +R          LK V   L  + 
Sbjct: 82  TSVEKVFHFARFDVAALA--SGLGISVLPIFCTKVASRLARTYSPRHGLKEVVMELVGVE 139

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
             K  +  +           E L D            +    +  + +   
Sbjct: 140 LDKQAQSSDW-------GRVEELSDVQLAYAAND-ARYLLPARQRLEMMLR 182


>gi|218680719|ref|ZP_03528616.1| DNA polymerase III subunit epsilon [Rhizobium etli CIAT 894]
          Length = 186

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLARSNGL-- 105
            + + +     +     +AHN+ F+       L       I   R + TL +AR      
Sbjct: 17  EVAEEILAFFGDA--KWIAHNATFDMGFINAELARIGLPPILPERVVDTLSMARRKHPMG 74

Query: 106 PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPN 149
           P++L A+     + +  + + G  L +        E +  R    
Sbjct: 75  PNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMIGGRQAAF 119


>gi|241600516|ref|XP_002405158.1| exosome component, putative [Ixodes scapularis]
 gi|215502468|gb|EEC11962.1| exosome component, putative [Ixodes scapularis]
          Length = 518

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 24/150 (16%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L           + D +       +L E   N  +  V H +  +   L+  F   + + 
Sbjct: 52  LMQISTRSSD-YVVDTLALRHELHLLNEVFANPKIIKVLHGADMDVLWLQRDFG--LYLV 108

Query: 92  RWICTLVLARSNGLPS-ALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
               T   AR  G+   +L  +      L + K  +  +                     
Sbjct: 109 GLFDTGQAARVLGMAHLSLAFLLRHYCHLDTDKKFQLADWR------------------I 150

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    +Y + D      ++  +    
Sbjct: 151 RPLPLE-MIKYAREDTHYLLHVYDLMRRDL 179


>gi|229472613|gb|ACQ72821.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 196

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 64/277 (23%), Gaps = 103/277 (37%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R    AS G  +V ADL+GIE R+LA          A                +   A  
Sbjct: 13  RRLFCASPGHIMVGADLSGIELRMLAHYL-------ARYDDGRYGDILLHGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G +       +   +L                         
Sbjct: 66  IGISRRLVKTVTYASLYGAGDQRI---GESYDQSLPPDKAKQ------------------ 104

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                              + +++A+      + +L     +A ++              
Sbjct: 105 -----------------KGKEIRQAYMDAIPGLEKLVEATKKAADR-------------- 133

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                          +    GR +                           K    ++Q+
Sbjct: 134 -------------GFIRSIDGRHINVDSSH---------------------KALNMLLQS 159

Query: 605 VSRDILAEGMMNATKAGYDI----------VLTVHDE 631
            +  I    M+ A      I          +  +HDE
Sbjct: 160 SAGCIAKRWMVIANDNFPTIDNEYLAHTHQLAFIHDE 196


>gi|92117640|ref|YP_577369.1| ribonuclease D [Nitrobacter hamburgensis X14]
 gi|91800534|gb|ABE62909.1| ribonuclease D [Nitrobacter hamburgensis X14]
          Length = 396

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 58/203 (28%), Gaps = 23/203 (11%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
                + D + + +  +   + + N  V  V H +  +  ++     +    H    T V
Sbjct: 61  PDEAVVVDALAEGIDLKPFFDLMSNERVLKVFHAARQDIEIVWHQAGII--PHPIFDTQV 118

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            A   G   ++       +++  + ++         +  T +                  
Sbjct: 119 AAMVLGYGDSIAYDALVERVNGHRPDKTHRFTDWSRRPLTKDQ----------------L 162

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVE 214
           EY   DVT  R++F  L+    K     ++ + +               A    +   V 
Sbjct: 163 EYAVADVTHLRDVFAALDADLKKRGRGDWVSEEMEVLTSPKTYDFHPERAWERLKT-RVR 221

Query: 215 RTKLDQELESLTYGLVSSSRCLE 237
           + K    +  +       ++   
Sbjct: 222 KPKDLAVMMEVAAWREQEAQSRN 244


>gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
 gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str.
           Toulouse]
          Length = 235

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 28/146 (19%)

Query: 1   MATLFIDFETRSPI----DLTKCG----ICKYAEDVCVILF----AFGFDDHPVELWDCV 48
           M  +  D ET         + + G    I +Y       ++         D  V +    
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMIDRYLTGKRFHVYLNPQGVVISDEAVAIHGLT 60

Query: 49  HD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICT 96
           ++          +   L E +  +  T+VAHN+ F+   L A         I +   + T
Sbjct: 61  NERLKNEKSFSDIADELLEFI--SGATMVAHNASFDIGFLNAELGRVNKPLISVDNILDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS 120
           L +AR      P++L  + +   + +
Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDN 144


>gi|262199835|ref|YP_003271044.1| ribonuclease D [Haliangium ochraceum DSM 14365]
 gi|262083182|gb|ACY19151.1| Ribonuclease D [Haliangium ochraceum DSM 14365]
          Length = 400

 Score = 54.4 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 46/164 (28%), Gaps = 23/164 (14%)

Query: 28  VCVILFAFGFDDHPV---ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
             + L    + D       L D V     P  +   + +  V  VAH +  +  +L A F
Sbjct: 44  AELALVQVSWGDPEAPEIALIDSVAVDPTP--VLRLIGDPAVVSVAHAAKQDLGILAARF 101

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
             DI    +  T + A   G       + E +            L  +  K        +
Sbjct: 102 --DIFAENFWDTQIAAAFVG-------MAEQIGYGKLVDAL---LGVQLDKASQFTKWLE 149

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           R     +        Y   DV     ++  L     +     ++
Sbjct: 150 RPLSPAQ------LRYAADDVRYLPRVWAHLSQRLDELGRRAWV 187


>gi|316933724|ref|YP_004108706.1| ribonuclease D [Rhodopseudomonas palustris DX-1]
 gi|315601438|gb|ADU43973.1| ribonuclease D [Rhodopseudomonas palustris DX-1]
          Length = 387

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
               + D + D +  +   + + N  V  V H +  +  ++     +    H    T V 
Sbjct: 48  EDALVIDALADGIDLKPFFDLMANEQVLKVFHAARQDIEIVWHRAGIV--PHPIFDTQVA 105

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           A   G   ++       +++  + ++         +  T                +    
Sbjct: 106 AMVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSRRPLT----------------QEQVH 149

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVER 215
           Y   DVT  R++F  L+    K     ++ + +          V    A    +   V +
Sbjct: 150 YAVSDVTHLRDVFAALDADLKKRGRSDWVSEEMEVLTSPSTYDVHPERAWERLKT-RVRK 208

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
            K    L  +       ++  +  ++ +  +  L        T    L     L     
Sbjct: 209 PKELAVLMEIAAWREQEAQSRDVPRSRVLKDDALGDIATHAPTS---LEKLANLRSLPK 264


>gi|83951561|ref|ZP_00960293.1| ribonuclease D [Roseovarius nubinhibens ISM]
 gi|83836567|gb|EAP75864.1| ribonuclease D [Roseovarius nubinhibens ISM]
          Length = 385

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 44/208 (21%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVHDPVMP 54
            + +D E     T                   + L              L D + + +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAMPGEDDAGAVLVDPLAEGLSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L E   + +V  V H +  +  +     +  +       T V A   G        GE
Sbjct: 67  EPLYELFRDENVVKVFHAARQDLEIF--YVDAGLIPQPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ R  K +  +     +      +     +Y  GDVT  R I++ 
Sbjct: 118 QVGY--------ETLVRRIAKEQLDKSSRFTDWSRRPLS-EAQKKYALGDVTHLRRIYEY 168

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVA 202
           L     K     ++     + G  +D A
Sbjct: 169 LAAELEKSGRDAWV---KEELGTLMDPA 193


>gi|289620962|emb|CBI52696.1| unnamed protein product [Sordaria macrospora]
          Length = 821

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 44/179 (24%), Gaps = 31/179 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA 60
             + +D E              Y     + L      +    + D +       +VL E 
Sbjct: 248 KEIALDLE--------HHDFRSYTGL--LSLMQISTREKD-WVIDTLQPWRHKLEVLNEV 296

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
             +  +  V H ++ +   L+      + +     T       G P      G +L    
Sbjct: 297 FADPKIVKVLHGAFMDAIWLQRDLG--LYLVGLFDTYHACAVLGYP------GRSLGYLL 348

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K  E +       K         R  P           Y + D      I+  L    
Sbjct: 349 SKFAEFEA-----DKKYQLADWRIRPLP------EEMFYYARSDTHYLLYIYDMLVNEL 396


>gi|298530025|ref|ZP_07017427.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509399|gb|EFI33303.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 966

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 39/176 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------QVLKE 59
           +D ETR      + G          +  +F        ++D  +   +         L  
Sbjct: 789 LDIETRYSA--QEVGGWGNCHR---MGVSFAV------VFDSRNQEFVTFDQEQAADLGS 837

Query: 60  ALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLV--LARSNGLPSALKAVGEAL 116
            LE+    +V  N   F+  VL+   + D      +  ++  +    G   +L  +    
Sbjct: 838 FLEDFS-LVVGFNLLKFDYRVLQGLSDYDFSSLPTLD-MLREIEARLGHRLSLDHLA-RH 894

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            L + K   G   +                            EYC+ DV+VTR+++
Sbjct: 895 TLGTNKSANGLMALKW----------------WKEGELDKIVEYCRQDVSVTRDLY 934


>gi|118590153|ref|ZP_01547556.1| probable ribonuclease d protein [Stappia aggregata IAM 12614]
 gi|118437125|gb|EAV43763.1| probable ribonuclease d protein [Stappia aggregata IAM 12614]
          Length = 394

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 57/209 (27%), Gaps = 16/209 (7%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + +           + D + + +  +   E + +  VT V H +  +  ++      +
Sbjct: 37  PKLCVIQMA-GPDMAFIVDALSEGLDLEPFFELMRDGSVTKVFHAARQDIEII-YHLG-E 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G   ++       K++           AR  K         R  
Sbjct: 94  LIPAPLFDTQVAAMVCGFGDSISYDQLVYKVTG----------ARIDKSSRFTDWARRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
              +  + L       D     +     +      Q+   +  ++N   Y  D   A   
Sbjct: 144 TAKQLDYALADVTHLRDAYQFLKANLAEQDRIHWVQDEMQVLTSVN--TYRTDPEQAWKR 201

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCL 236
            + + V +      +  +       ++  
Sbjct: 202 LK-LRVRKPVELAVMMEVAAWREREAQSR 229


>gi|75675781|ref|YP_318202.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
 gi|74420651|gb|ABA04850.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
          Length = 382

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 34/239 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E      L +           + +           + D +   +  +     + 
Sbjct: 22  VITVDTE-----FLRETTYYPL-----LCVIQLA-SPDEAVVVDALAGGIDLKPFFALMS 70

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  V  V H +  +  ++       +  H    T V A   G   ++       +++  +
Sbjct: 71  NESVLKVFHAARQDIEIIWHQAG--LIPHPVFDTQVAAMVLGHGDSIAYDALVERITGHR 128

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            ++         +  T                    EY   DVT  R++F  L+   SK 
Sbjct: 129 PDKTHRFTDWSRRPLT----------------AEQLEYAVADVTHLRDVFAALDADLSKR 172

Query: 183 QELWYLDQTINDRGYC----VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
               ++ + +               A    +   V + K    L  +       ++   
Sbjct: 173 GRSDWVSEEMEVLTSPKTYDFHPERAWERLKS-RVRKPKDLAVLMEVAAWREQEAQSRN 230


>gi|24215616|ref|NP_713097.1| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45657025|ref|YP_001111.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24196771|gb|AAN50115.1|AE011455_9 ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
 gi|45600262|gb|AAS69748.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 212

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 60/203 (29%), Gaps = 39/203 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E          G+    +   + +       + V L   + D     +LK   
Sbjct: 29  DRLAVDCE--------MMGLNPRRD--RLCVVQICDSSNNVSLVQILPDQKEAPLLKSLF 78

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           EN ++  + H +  +   L+    +++      CT + ++          +       + 
Sbjct: 79  ENPEIVKIFHFARMDSLFLRYRLGINLQ--NVFCTKIASK----------LARTY---TD 123

Query: 122 KMEEGKELIARF-----CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K    K+LI  F      K         +     +       EY  GDV     + ++L 
Sbjct: 124 K-HGLKDLIKEFYDEVIDKKNQSSDWGKKILTKDQI------EYASGDVKYLISLEQKLT 176

Query: 177 PLSSKEQELWYLDQTINDRGYCV 199
            +    +E          R   V
Sbjct: 177 EIL--VREGRDSLAREAFRCLPV 197


>gi|254485580|ref|ZP_05098785.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101]
 gi|214042449|gb|EEB83087.1| DNA polymerase III, epsilon subunit [Roseobacter sp. GAI101]
          Length = 228

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 51/179 (28%), Gaps = 35/179 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWDCVHDPVMPQVLK- 58
           M  + +D ET            +  E   V L           +  +      MP     
Sbjct: 1   MREIVLDTETTGFDP---ESGDRIVEIGAVELMGHMATGKTYHQYINPERG--MPDEAFQ 55

Query: 59  ------EALENT---------------DVTIVAHNSYFERTVLK---ACFNLD-IPIHRW 93
                 + L +                D  ++ HN+ F+   L        L  IP  + 
Sbjct: 56  VHGLGDDFLRDKPKFAQIGQDFLDFIGDSKLIIHNAAFDIKFLNAELKWMGLPQIPWAQA 115

Query: 94  ICTLVLA--RSNGLPSALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPN 149
           + TL +A  R  G P++L A+     + +      G  L +        E +  R    
Sbjct: 116 LDTLAIARKRFPGSPASLDALCRRFNIDNTSRTLHGALLDSEILAEVYLELIGGRQPDF 174


>gi|148555811|ref|YP_001263393.1| 3'-5' exonuclease [Sphingomonas wittichii RW1]
 gi|148501001|gb|ABQ69255.1| 3'-5' exonuclease [Sphingomonas wittichii RW1]
          Length = 205

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 43/177 (24%), Gaps = 28/177 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALE 62
           + +D ET          +        + L           L             L+  L 
Sbjct: 20  VAVDTET----------MGLITPRDRLCLVQISDGRGDEHLVRFAPGSDYAAPNLRAVLA 69

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +     + H + F+   ++    + +      CT   +R            +   L    
Sbjct: 70  DPARLKLYHFARFDLAAIRHY--IGVMAAPVYCTKTASRLIR------TYTDRHGL---- 117

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               KEL+      E  +     +     +      +Y   DV     +   L+   
Sbjct: 118 ----KELVRELLGQEVSKQQQSSDWG-APDLSEAQKDYAASDVRYLHAMRTILDERL 169


>gi|157124837|ref|XP_001660547.1| hypothetical protein AaeL_AAEL010007 [Aedes aegypti]
 gi|108873835|gb|EAT38060.1| conserved hypothetical protein [Aedes aegypti]
          Length = 949

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 50/180 (27%), Gaps = 34/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L ID E             +  +    +            + D +       +L E  
Sbjct: 291 KELAIDLE---------HHSYRTYQGFTCL-MQISTRSKD-YIIDTLALREELHILNEVF 339

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
            N  V  V H +  +   L+   +L + I     T   A+        L+ + +    + 
Sbjct: 340 TNPKVVKVLHGAISDIEWLQR--DLSLYIVNMFDTGEAAKVLEFSRIGLQFLLKHYCNID 397

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R  P++      F EY + D      I+ R+    
Sbjct: 398 TDKAYQLADW-------------RIRPIPHN------FIEYARKDTHYLLYIYDRMRNEL 438


>gi|68248994|ref|YP_248106.1| ribonuclease D [Haemophilus influenzae 86-028NP]
 gi|68057193|gb|AAX87446.1| ribonuclease D [Haemophilus influenzae 86-028NP]
          Length = 380

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 75/254 (29%), Gaps = 44/254 (17%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLK 58
           M + + +D E           +  Y     + L    +DD  V L D        P    
Sbjct: 29  MKSAVALDTE--------FMRVSTYF--PKLGLIQL-YDDERVSLIDPLAITDFSP--FV 75

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-EA 115
             L N  V  + H+   +  V    F  D      I T ++AR  GL   + L  +  + 
Sbjct: 76  ALLSNPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQY 133

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +   K       I R                       +  +Y  GDV     ++  L
Sbjct: 134 LNIEIDKGATRTNWIKRPLS-------------------DIQLQYAAGDVWYLLPLYHIL 174

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           E   +K      +          + +A  H L +    +          L    +S  R 
Sbjct: 175 EKELAKTPWEQAVRDDCE-----LALAKTHKLQERDSEKAYLDIPNAWKLNPFELSRLRI 229

Query: 236 LEKLKTWLFLETGL 249
           L + +  + +E  L
Sbjct: 230 LAQWRQNVAIERDL 243


>gi|15596491|ref|NP_249985.1| ribonuclease D [Pseudomonas aeruginosa PAO1]
 gi|9947230|gb|AAG04683.1|AE004559_2 ribonuclease D [Pseudomonas aeruginosa PAO1]
          Length = 374

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 83/278 (29%), Gaps = 45/278 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKE 59
            L +D E           +  +     ++      D     L D    P++ Q      E
Sbjct: 27  YLALDTE--------FMRVDTFYPAAGLVQVG---DGRQEWLID----PLLIQDWSPFAE 71

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEAL 116
            LE+  V  V H    +  V        +P+     T + A   G+  ++   K V E L
Sbjct: 72  LLEDERVVKVLHACSEDLEVFLRLTG-SLPV-PLFDTQLAAAYLGMAHSMGYSKLVKEVL 129

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +   K E   + + R                       +   Y   DV    +++  L+
Sbjct: 130 DIDLPKDETRSDWLQRPLT-------------------EMQMRYAADDVQHLAQVYLALD 170

Query: 177 PLSSKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              S+E+  W L+             D   A+   ++    R +    L  L       +
Sbjct: 171 TRLSEEKRAWLLEDGAELVANLCRESDPREAYREVKLGWRLRPQQLAVLRELCAWREEQA 230

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           R   + +  +  E  L          +  L++ + + P
Sbjct: 231 RLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHP 268


>gi|33152538|ref|NP_873891.1| ribonuclease D [Haemophilus ducreyi 35000HP]
 gi|33148762|gb|AAP96280.1| ribonuclease D [Haemophilus ducreyi 35000HP]
          Length = 373

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 91/302 (30%), Gaps = 43/302 (14%)

Query: 4   LFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           + +D E   TRS           Y     +I     FD     L D            + 
Sbjct: 29  IALDTEFIRTRS-----------YYPKFGLIQL---FDGEQTSLIDPTTISDFL-PFIDL 73

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L N ++  V H    +  + +  FN  +     I T ++A  +GL  +         +  
Sbjct: 74  LANPNIVKVLHACSEDLEIFQHQFNQALTP--LIDTQIMAAFSGLGLS---------IGF 122

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K+     L     KG +      R             +Y   DV     I+++L+   +
Sbjct: 123 AKLV-NHYLNIELDKGASRTDWLARPLT------ETQLQYAAADVYYLLPIYQKLQAELA 175

Query: 181 KEQELWYLDQTI----NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           +      ++Q      N R   +++  A+           +    L+ L    +  +R  
Sbjct: 176 QTNWQEAVNQECQLLVNKRNKTLELNDAYKEISYAWTLTRQQLAILKLLAKWRIEEARKR 235

Query: 237 EKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLKLNT 293
           +    ++  E  L  +         ++L+       +    ++     +A   +      
Sbjct: 236 DLALNFVIKEQSLIEIAKSQPKHTSQLLTFMHPNEVRIHGKKILWLVEQAKIISEQDYPL 295

Query: 294 LV 295
           L+
Sbjct: 296 LI 297


>gi|262342107|gb|ACY54564.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 59/274 (21%), Gaps = 97/274 (35%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS  + +V ADL+GIE R+LA          A                +   
Sbjct: 11  AEFRKLFKASPNQVMVGADLSGIELRMLAHYL-------ARYDEGRYADVLLHGDIHQEN 63

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L                      
Sbjct: 64  ADKIGISRRAVKTVTYAFLYGAGDSKL---GKSFDAQLTEQQAK---------------- 104

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L N +    E            
Sbjct: 105 -------------------KKGKEIRQAYMDAVPGLEKLVNAVKSKAES----------- 134

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 135 ----------------GYINLCDGRRCSVDGSH---------------------KALNYL 157

Query: 602 VQAVSRDILAEGMM----NATKAGYDIVLTVHDE 631
           +Q  +  +    M+    N  +     +  +HDE
Sbjct: 158 LQGSAGVLAKRWMLINHDNTRELCCSQLAFIHDE 191


>gi|209883542|ref|YP_002287399.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
 gi|209871738|gb|ACI91534.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
           OM5]
          Length = 230

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 32/159 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           M  + +D ET     L      +  E  CV +F                +  MPQ     
Sbjct: 1   MREIVLDTETTGLDALRG---DRLVEIGCVEMFNH-MPTGQTYHVYINPERDMPQEAFAV 56

Query: 57  ------------LKEALENTDVTIVA------HNSYFERTV----LKACFNLDIPIHRWI 94
                       L  A+ +  +  +       HN+ F+       L       IP  R +
Sbjct: 57  HGLSTEFLADKPLFAAVADEFLEFIGDAPLIIHNASFDIGFINMELDRLKRAAIPCERLV 116

Query: 95  CTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIA 131
            TL+LAR      +  L  +     + + +  +   L+ 
Sbjct: 117 DTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLD 155


>gi|188589009|ref|YP_001921284.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
 gi|188499290|gb|ACD52426.1| putative exonuclease [Clostridium botulinum E3 str. Alaska E43]
          Length = 974

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 16/189 (8%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--- 105
           H   + + L   LE+  + ++ HN  FER  L     +    +    ++ L+        
Sbjct: 75  HLEDIKKELLVFLED--LPLICHNGGFERKFLSYH--IPEIKNEIFDSMELSAILEPWRK 130

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              L ++ +++ +   K E  + L       +    L  R         +    Y   D 
Sbjct: 131 EYNLDSLIKSITIL-DKDEFHRGLEDSIDTLKVVNSLLCREWIREESKKKNKSLYNIIDK 189

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
                 +   +    K      +   I D  Y   V+      Q V ++R  ++ E    
Sbjct: 190 DYEFLKYWEWKEYLLK-----PILFNIEDYPY---VSYEENKRQDVKLKRIPIEYEKYED 241

Query: 226 TYGLVSSSR 234
                    
Sbjct: 242 LLINEEIWN 250


>gi|6018181|gb|AAF01781.1| P100 polymyositis-scleroderma overlap syndrome associated
           autoantigen homolog [Mus musculus]
          Length = 831

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPVQLQ 467

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 468 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502


>gi|37523316|ref|NP_926693.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
 gi|35214320|dbj|BAC91688.1| glr3747 [Gloeobacter violaceus PCC 7421]
          Length = 195

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 26/188 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHDPVMPQVLKE 59
             L +D ET                   V L    +D     V + DC     +   +++
Sbjct: 28  KVLAVDTET-------AHWHQVSTGKNRVSLLQV-WDGTSEAVSVIDCFAVD-LTAFVEK 78

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            + N ++  + HN+ ++                 +CTL +ARS   P++ +   E     
Sbjct: 79  TMRNWEIVKLIHNAPYDLA----YLGGAAQARSVVCTLQMARSI--PTSRRGALER---- 128

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  K L A F   E  +     N            +Y   D  VT  I++ +  L 
Sbjct: 129 ----NSLKALSAHFLGIELDKRYQASNWALRPLTAEQL-DYAALDPWVTFHIWEHMRALV 183

Query: 180 SKEQELWY 187
             E E + 
Sbjct: 184 EPENEGFE 191


>gi|238695633|ref|YP_002922660.1| P46 [Xanthomonas phage phiL7]
 gi|190344000|gb|ACE75786.1| P46 [Xanthomonas phage phiL7]
          Length = 478

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 67/284 (23%), Gaps = 43/284 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELWDCVH-------D 50
           M+ + +D E  +     K     +     V+   +            +            
Sbjct: 1   MSYVVLDLE-TTTTTRFKRKATPFNSLNKVVALGWKRQGDTRNTGVYYPTAKAMDGTYSG 59

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERT------VLKACFNLDI--PIHRWICTLVLARS 102
                 L   LE     +V HN  F+         L     +D      +  CT +    
Sbjct: 60  GAKDGWLAPLLE-GTTFLVGHNGKFDILHAICSGPLNRKAWIDYIDRGGQIWCTQLGEYL 118

Query: 103 NGLP------SALKAVGEALKLSSQKMEEGKEL----IARFCKGETHECLYDRNKPNHRE 152
                     ++L  V       + K +  K L    I            Y     +H  
Sbjct: 119 LHGQAQEYQIASLDEVAPRYG-GNLKNDAVKSLWEAGIDTPDIDADMLMEYLIGYESHHN 177

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSK---------EQELWYLDQTINDRGYCVDVAL 203
                G+   GD+  T ++F                                G  V++  
Sbjct: 178 ELHPAGQQDDGDIGNTEKVFLGQVQAFKARGGLRSALLNMGAMVFTIEAEFNGMFVNLPW 237

Query: 204 AHTLNQIVDVERTKLDQELESLTYGL---VSSSRCLEKLKTWLF 244
           A    ++++ +  +  QEL                       +F
Sbjct: 238 ALEHAKVLEGQLKEATQELNGYVPEGLPFEFKWSSRFHKSALIF 281



 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 21/130 (16%)

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT--------ETTCQRVLSSN 266
           + K + + + +     S  +   +   + F   G    D           +T   V+   
Sbjct: 352 KNKGEVKTKRVKGPDFSKPKSRIEDFKYRF--GGFTTPDKKWEGSDAGVYSTAAEVIEEL 409

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKL----------NTLVEAMNSDGRLRGTLQFLGASRT 316
                  ++    R    +                  ++  +  DG +   L  +  + T
Sbjct: 410 GNRNIPFLKALARRADIHKDLSTYFIVTDEDTGESKGMLTLVGPDGIIHHQLHMVR-TIT 468

Query: 317 GRWSGCVFPP 326
           GR S      
Sbjct: 469 GRLSSSDPNL 478


>gi|170755669|ref|YP_001779899.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
 gi|169120881|gb|ACA44717.1| DNA polymerase III subunit epsilon [Clostridium botulinum B1 str.
           Okra]
          Length = 309

 Score = 54.4 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 41/149 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVELW-------------- 45
           M  + IDFET +    + C I     +D  ++          V                 
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 46  ----------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHR 92
                     D +    + Q +K+   N    ++AHN+ F+ +VL+     +N+ +P   
Sbjct: 53  IHGIRPHMVKDELEFDKIWQKIKDYFNNN--LVIAHNASFDMSVLRSTLKLYNIKMPSFE 110

Query: 93  WICTLVLA---RSNGLPSALKAVGEALKL 118
           +ICT+ L+    SN   + L  +   L  
Sbjct: 111 YICTMKLSKNFYSNIDNARLNTINNFLGY 139


>gi|262342109|gb|ACY54565.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 61/274 (22%), Gaps = 97/274 (35%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS  + +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRKLFKASPNQVMVGADLSGIELRMLAHYL-------ARYDEGRYADVLLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L                      
Sbjct: 63  ADKIGISRRAVKTVTYAFLYGAGDSKL---GKSFDAQLTEQQAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L N +    E            
Sbjct: 104 -------------------KKGKEIRQAYMDAVPGLEKLVNAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GFINLCDGRRCSVDGSH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMMNATKAGYDI----VLTVHDE 631
           +Q  +  +    M+   ++  ++    +  +HDE
Sbjct: 157 LQGSAGVLAKRWMLINYESTRELCCSQLAFIHDE 190


>gi|107100745|ref|ZP_01364663.1| hypothetical protein PaerPA_01001773 [Pseudomonas aeruginosa PACS2]
          Length = 380

 Score = 54.0 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 83/278 (29%), Gaps = 45/278 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---LKE 59
            L +D E           +  +     ++      D     L D    P++ Q      E
Sbjct: 33  YLALDTE--------FMRVDTFYPAAGLVQVG---DGRQEWLID----PLLIQDWSPFAE 77

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEAL 116
            LE+  V  V H    +  V        +P+     T + A   G+  ++   K V E L
Sbjct: 78  LLEDERVVKVLHACSEDLEVFLRLTG-SLPV-PLFDTQLAAAYLGMAHSMGYSKLVKEVL 135

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +   K E   + + R                       +   Y   DV    +++  L+
Sbjct: 136 DIDLPKDETRSDWLQRPLT-------------------EMQMRYAADDVQHLAQVYLALD 176

Query: 177 PLSSKEQELWYLDQTINDR---GYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              S+E+  W L+             D   A+   ++    R +    L  L       +
Sbjct: 177 TRLSEEKRAWLLEDGAELVANLCRESDPREAYREVKLGWRLRPQQLAVLRELCAWREEQA 236

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           R   + +  +  E  L          +  L++ + + P
Sbjct: 237 RLRNRPRNHVLRERTLWPLARLLPKNKTDLAAIEDMHP 274


>gi|182417131|ref|ZP_02948504.1| exonuclease [Clostridium butyricum 5521]
 gi|237669064|ref|ZP_04529048.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378973|gb|EDT76479.1| exonuclease [Clostridium butyricum 5521]
 gi|237657412|gb|EEP54968.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 205

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 37/131 (28%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV------------------------CVILFAFG 36
           M  LF D ET S    + C +     D                          +  F+  
Sbjct: 1   MKLLFFDTETTSIKPGSICQLSYITVDASTKPQVTTGKNFFFTVDEMDPSAQEIHGFSL- 59

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIH 91
                 +L++         +  + + +      I+ HN  F+   LK             
Sbjct: 60  -----EKLYELSEGQYFEDLAFDFINDFREADFIIGHNVNFDIRFLKHELFTLGELFEPK 114

Query: 92  RWICTLVLARS 102
              CT+  A  
Sbjct: 115 NIFCTM--AYY 123


>gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa]
 gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa]
          Length = 855

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 29/167 (17%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+E  ++     V H +  +   L+  F + I       T   +R   L           
Sbjct: 297 LREVFKDPAKRKVMHGADRDIVWLQRDFGIYI--CNLFDTGQASRVLKLERN-------- 346

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + L+  FC     +   +               Y + D      I+  + 
Sbjct: 347 --------SLEYLLHHFCGVTAKKEYQNAEWRLRPLP-DEMIRYAREDTHYLLHIYDLMR 397

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L   +          ND G   D  L     +  DV     ++EL 
Sbjct: 398 ALLLTKHSD-------NDNG---DPPLVEVYKRSYDVCMQLYEKELF 434


>gi|254579989|ref|XP_002495980.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
 gi|238938871|emb|CAR27047.1| ZYRO0C07678p [Zygosaccharomyces rouxii]
          Length = 741

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 47/197 (23%), Gaps = 32/197 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D E              Y     ++             L D +       VL E  
Sbjct: 233 EIAVDLE-----------HHDYRSYYGIVCLMQVSTR-QTDYLVDTLALRDDLVVLNEVF 280

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +  V H ++ +   L+    L I       T   +R+ G P        +L    +
Sbjct: 281 ANPLIVKVFHGAFMDIIWLQRDLGLYI--VSLFDTYHASRALGFPRH------SLAYLLE 332

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                K              L                 Y + D      I+ +L      
Sbjct: 333 TFASFKTSKKYQLADWRVRPLSK-----------AMSAYARADTHFLLNIYDQLRNKLII 381

Query: 182 EQELWYLDQTINDRGYC 198
           E +L  +     +    
Sbjct: 382 ENKLAGVLAESRNVAKR 398


>gi|167583629|ref|YP_001671819.1| type I DNA polymerase [Enterobacteria phage phiEco32]
 gi|164375467|gb|ABY52875.1| type I DNA polymerase [Enterobacteria phage phiEco32]
          Length = 185

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 51/170 (30%), Gaps = 17/170 (10%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
             D E+ +  D      C Y  DV                        +   +++ L   
Sbjct: 10  AFDIESNALYDDITKVWCIYIFDVET--------GERWGY----RPHQIEDGIRK-LTEA 56

Query: 65  DVTIVAHNSY-FERTVLKACFNLDIPIH-RWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           DV  V HN   F+   LK  +   I  H     TL L+R         +  E  K   ++
Sbjct: 57  DVL-VGHNIIDFDLPALKKMYPSLINYHFNVFDTLCLSRYLKPDRIGDSP-EYPKGDPRR 114

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              G  L          +  Y   +            YC+ DV +T +++
Sbjct: 115 GPRGHGLKQWGEFLGELKGDYGEQEEAWDAFTEDMFTYCEQDVNLTVKVY 164


>gi|148675119|gb|EDL07066.1| polymerase (DNA directed), gamma, isoform CRA_b [Mus musculus]
          Length = 1239

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R   +       G +   +   Q + 
Sbjct: 793  EINKMISFWRNAHKRISSQMVVWLPRSALP----RVVTRHPSFDEEGHYGAILP--QVVT 846

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 847  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAA 900

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 901  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQS 960

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA---- 502
              +++       L       K        +    +            +      T     
Sbjct: 961  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWV 1020

Query: 503  -CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              + ++   R+        W +   A E+    G       + +   +        L   
Sbjct: 1021 SLQDLRMIRREASR--KSRWKKWEVASERAWTGGTESEMFNKLESIAMSDTPRTPVLGCC 1078

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +   R+L    V                           +VQ+ + D   ++   M    
Sbjct: 1079 IS--RALEPSVVQGEFITSR----------------VNWVVQSSAVDYLHLMLVAMKWLF 1120

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1121 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1163


>gi|87080815|ref|NP_059490.2| DNA polymerase subunit gamma-1 [Mus musculus]
 gi|37537265|dbj|BAC98463.1| polymerase (DNA directed), gamma [Mus musculus]
          Length = 1217

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/403 (11%), Positives = 103/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R   +       G +   +   Q + 
Sbjct: 771  EINKMISFWRNAHKRISSQMVVWLPRSALP----RVVTRHPSFDEEGHYGAILP--QVVT 824

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 825  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAA 878

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 879  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQS 938

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA---- 502
              +++       L       K        +    +            +      T     
Sbjct: 939  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWV 998

Query: 503  -CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              + ++   R+        W +   A E+    G       + +   +        L   
Sbjct: 999  SLQDLRMIRREASR--KSRWKKWEVASERAWTGGTESEMFNKLESIAMSDTPRTPVLGCC 1056

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +   R+L    V                           +VQ+ + D   ++   M    
Sbjct: 1057 IS--RALEPSVVQGEFITSR----------------VNWVVQSSAVDYLHLMLVAMKWLF 1098

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1099 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1141


>gi|293347809|ref|XP_002726703.1| PREDICTED: rCG30986-like isoform 2 [Rattus norvegicus]
          Length = 860

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 425 -----------RIRPLP------EEMLNYARDDTHYLLYIYDRMRLELWERGNDQPVQLQ 467

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 468 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502


>gi|254558840|ref|YP_003065935.1| hypothetical protein METDI0201 [Methylobacterium extorquens DM4]
 gi|254266118|emb|CAX21870.1| hypothetical protein, putative exonuclease domain [Methylobacterium
           extorquens DM4]
          Length = 297

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 21/149 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LF---AFGFDDHPVELW-----D 46
           M  + IDFET +    + C +   + E   V+     L       F    + +      D
Sbjct: 1   MKVVAIDFETANERRDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGILPAD 60

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
               P  P+V+ E L + +   ++AHN+ F+  VL    A +   +P     CTL +AR 
Sbjct: 61  VRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIARR 120

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKE 128
                    L  V   L +  +  + G++
Sbjct: 121 VFPDPAGHGLAKVAGRLGIRFEHHDAGED 149


>gi|163849777|ref|YP_001637820.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
 gi|163661382|gb|ABY28749.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           extorquens PA1]
          Length = 297

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 21/149 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LF---AFGFDDHPVELW-----D 46
           M  + IDFET +    + C +   + E   V+     L       F    + +      D
Sbjct: 1   MKVVAIDFETANERRDSACAVGLAWIEGGRVVRRESRLIRPPQLRFSPGNIRVHGILPAD 60

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
               P  P+V+ E L + +   ++AHN+ F+  VL    A +   +P     CTL +AR 
Sbjct: 61  VRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIARR 120

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKE 128
                    L  V   L +  +  + G++
Sbjct: 121 VFPDPAGHGLAKVAGRLGIRFEHHDAGED 149


>gi|1401344|gb|AAC47290.1| DNA polymerase gamma [Drosophila melanogaster]
          Length = 1145

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 81/308 (26%), Gaps = 38/308 (12%)

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVT 411
               +   +RS V A  G +LV AD+   E  + +     +  GE               +
Sbjct: 785  PDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKS 844

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +   ++  A+     R   KV+  A  Y  G    + +        +      K    
Sbjct: 845  NGSDMHSI-TAKAVGISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKM 903

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                +    +                      + ++      +        E  +   Q 
Sbjct: 904  FSITKGKRVY---------------RLREEFHDELEDRAYSSY--------EASRLAIQR 940

Query: 532  IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  +   + +               +   S     +     +R+          +E 
Sbjct: 941  NRTLAEV-FHRPKWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALE--ADTGPEQEQ 997

Query: 592  TYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS--- 645
             +       +VQ+ + D   ++   M     +     L+ HDE+     +     A+   
Sbjct: 998  RFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAM 1057

Query: 646  MLYHLMTS 653
             + +LMT 
Sbjct: 1058 HITNLMTR 1065



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 62/219 (28%), Gaps = 28/219 (12%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-----LKA----VGEALK 117
            +V HN  ++R  LK  +  +    R++ T+ L       ++     LK+      E L 
Sbjct: 254 LVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVSGVTSYQRAMLKSKKEPAAEDLG 313

Query: 118 LSSQ----KMEEGKELI--ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              Q     + E   L         E      +      R++++    YC  DV  T  I
Sbjct: 314 WLEQSSLNSLVELHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRI 373

Query: 172 FKRLEPLSSKEQELWYLDQ-TIND----------RGYCVDVALA--HTLNQIVDVERTKL 218
            + L PL ++           +                +  A      L+        + 
Sbjct: 374 LRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYIREAQLTYEDLSIEAKYHLGRR 433

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +E  SL              + W   E  L      + 
Sbjct: 434 AEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKP 472


>gi|19527699|gb|AAL89964.1| AT02241p [Drosophila melanogaster]
          Length = 1145

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 81/308 (26%), Gaps = 38/308 (12%)

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVT 411
               +   +RS V A  G +LV AD+   E  + +     +  GE               +
Sbjct: 785  PDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKS 844

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +   ++  A+     R   KV+  A  Y  G    + +        +      K    
Sbjct: 845  NGSDMHSI-TAKAVGISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKM 903

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                +    +                      + ++      +        E  +   Q 
Sbjct: 904  FSITKGKRVY---------------RLREEFHDELEDRAYSSY--------EASRLAIQR 940

Query: 532  IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  +   + +               +   S     +     +R+          +E 
Sbjct: 941  NRTLAEV-FHRPKWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALE--ADTGPEQEQ 997

Query: 592  TYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS--- 645
             +       +VQ+ + D   ++   M     +     L+ HDE+     +     A+   
Sbjct: 998  RFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAM 1057

Query: 646  MLYHLMTS 653
             + +LMT 
Sbjct: 1058 HITNLMTR 1065



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 62/219 (28%), Gaps = 28/219 (12%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-----LKA----VGEALK 117
            +V HN  ++R  LK  +  +    R++ T+ L       ++     LK+      E L 
Sbjct: 254 LVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVSGVTSYQRAMLKSKKEPAAEDLG 313

Query: 118 LSSQ----KMEEGKELI--ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              Q     + E   L         E      +      R++++    YC  DV  T  I
Sbjct: 314 WLEQSSLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRI 373

Query: 172 FKRLEPLSSKEQELWYLDQ-TIND----------RGYCVDVALA--HTLNQIVDVERTKL 218
            + L PL ++           +                +  A      L+        + 
Sbjct: 374 LRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYIREAQLTYEDLSIEAKYHLGRR 433

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +E  SL              + W   E  L      + 
Sbjct: 434 AEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKP 472


>gi|74226616|dbj|BAE21732.1| unnamed protein product [Mus musculus]
          Length = 1217

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/398 (11%), Positives = 102/398 (25%), Gaps = 44/398 (11%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R   +       G +   +   Q + 
Sbjct: 771  EINKMISFWRNAHKRISSQMVVWLPRSALP----RVVTRHPSFDEEGHYGAILP--QVVT 824

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 825  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAA 878

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 879  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQS 938

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +++       L       K        +    +            +      T     
Sbjct: 939  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTE---- 994

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
               W        +    + +   +     K  +A +R        +       + +    
Sbjct: 995  -DGWVSL-----QDLRMIQREASRKSRWKKWEVASERAWTGGTESEMFNKLESIAMSDTP 1048

Query: 567  SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNATKAGY- 622
                     +R+   +   Q     +        +VQ+ + D   ++   M    +    
Sbjct: 1049 RTPVLGCCISRALEPSVV-QGEFITS----RVNWVVQSSAVDYLHLMLVAMKWLFEEFAI 1103

Query: 623  --DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
                 +++HDE+     + D + A+       +L   M
Sbjct: 1104 DGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1141


>gi|195401414|ref|XP_002059308.1| GJ18283 [Drosophila virilis]
 gi|194142314|gb|EDW58720.1| GJ18283 [Drosophila virilis]
          Length = 1176

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 49/177 (27%), Gaps = 36/177 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEAL 61
           + +D E    I+L   G         + L   G       L+D    P M     LK  L
Sbjct: 727 ISLDCE---GINLGIKG--------EITLIEIGTARGEAFLFDVQSCPAMVSDGGLKTLL 775

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-----------ALK 110
           E+  V  V H+   +   L       I +     T                      +L 
Sbjct: 776 EHDQVIKVIHDCRNDAVNL--YLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLN 833

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           ++ E        +++  + I R  +    +    R              Y  GDV V
Sbjct: 834 SLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTR----------EMMLYAAGDVLV 880


>gi|225156183|ref|ZP_03724663.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2]
 gi|224803073|gb|EEG21316.1| 3'-5' exonuclease [Opitutaceae bacterium TAV2]
          Length = 389

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 51/196 (26%), Gaps = 39/196 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y     V L  F  D   V L D +     P  LK   
Sbjct: 49  KEVALDTEAD----------NMYHYQTRVCLLQFLID-GEVWLVDLMT----PLPLKPLW 93

Query: 62  EN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKA-VGEALKL 118
           E      +V H S F+  +L               T++ A+        L A + E   +
Sbjct: 94  EKLATKHLVMHGSDFDLRLLHDLCGF--RPKSLFDTMLAAQLLNRQRIGLAALLSEHFGV 151

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +  K                       N            +Y   DV     +   L   
Sbjct: 152 TLDK------------------GGQKANWSKRPL-TPKLLDYASLDVWHLPALRDILTRE 192

Query: 179 SSKEQELWYLDQTIND 194
            S+   + +++Q    
Sbjct: 193 LSRLGRMEWMEQQCRR 208


>gi|307207302|gb|EFN85052.1| DNA polymerase subunit gamma-1, mitochondrial [Harpegnathos saltator]
          Length = 1161

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 93/318 (29%), Gaps = 38/318 (11%)

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE--- 385
            +P+   S     + +     + ++     + I   +RS V A  G  +V AD+   E   
Sbjct: 762  IPQVVVSGTLTRRAVERTWMTASNAS--PERIGSELRSMVQAPPGYNIVGADVDSQELWI 819

Query: 386  ---ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQ 442
                                        +      +V  A+     R   KV+  A  Y 
Sbjct: 820  ASMLGDAHHSGSIHGATPFGWMTLIGTKSNGTDMHSV-TAKAVGISRDHAKVINYARIYG 878

Query: 443  GGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             G K  +++      ++       K+       +  + F    +           F+   
Sbjct: 879  AGQKFAEQLLKQFNPSMTDAEAAAKSRKMFTLTKGKKVFRLKAE-----------FVNDN 927

Query: 503  CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILML 562
             E +     Q +         L + F+++   G +  A   R +  +   +      L  
Sbjct: 928  IEDIPYTSFQAYQIAKLYGKTLQEMFQRSEWVGGSESAMFNR-LEEIASSERPVTPFLNS 986

Query: 563  PSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNATK 619
               R+L   +  N+ ++L                    +VQ+ + D   ++   M    +
Sbjct: 987  RLSRALEVTNTDNDDNFL--------------PTKINWVVQSGAVDFLHLMLVSMRWLMR 1032

Query: 620  AGYDIVLTVHDEIVCETP 637
                  L+ HDE+    P
Sbjct: 1033 DNARFCLSFHDEVRYLVP 1050



 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 69/264 (26%), Gaps = 46/264 (17%)

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTL--------VLARSNGLPSALKAVGE--- 114
             +V HN  ++R+ +K  + ++    R++ T+        + +    L  + K   E   
Sbjct: 256 KIVVGHNVSYDRSRIKEQYWMNCTGTRFLDTMSLHVCVSGLNSYQRSLLMSKKEDSEKDD 315

Query: 115 -ALKLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                S   + E  +L        +  +   +    + +  + +   YC  DV  T  + 
Sbjct: 316 WQFNTSLNNLTEVHKLYCGYEISKQPRDIFVEGTLEDVKNDFNMLMSYCASDVVATHNVL 375

Query: 173 KRLEPLSSKEQELWYLDQ-------------------TINDRGYCVDVA----LAHTLNQ 209
             + PL  +                                 G   D+            
Sbjct: 376 VNVFPLFQERFPHPVTLAGMLELGSAYLPVNSNWQRYLKEAEGTFDDLDYEVKFTLAQKA 435

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT--------ETTCQR 261
               +    +Q    L             LK           +  T        ++  ++
Sbjct: 436 KAACQLMHGEQYKHDLWMWDQDW--STRTLKLKKKPSKPTSTDSKTSVKKYAIKKSDDKQ 493

Query: 262 VLSSNKKLTPQAIQVFNNRMRASR 285
            LS  ++     +      +  ++
Sbjct: 494 YLSDGEQEEEDPLAKEFAYLEETK 517


>gi|296204096|ref|XP_002749184.1| PREDICTED: DNA polymerase subunit gamma-1 [Callithrix jacchus]
          Length = 1229

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/403 (11%), Positives = 100/403 (24%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +      +R                    PQ + 
Sbjct: 783  EINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDY------DEEGLYGAILPQVVT 836

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 837  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAA 890

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   KV      Y  G  
Sbjct: 891  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKVFNYGRIYGAGQP 950

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA---- 502
              +++       L       K        +    +    +       +            
Sbjct: 951  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSEEGEWLVRELHLPVDRIEGGWI 1010

Query: 503  -CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              + ++K  R+        W +     E+    G       + +            L   
Sbjct: 1011 SLQDLRKVQREASR--KSRWKKWEVVAERAWMGGTESEMFNKLESIATSDIPCTPVLGCR 1068

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +   R+L    V                           +VQ+ + D   ++   M    
Sbjct: 1069 IS--RALEPSVVQGEFMTSR----------------VNWVVQSSAVDYLHLMLVAMKWLF 1110

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D + A+       +L   M
Sbjct: 1111 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1153


>gi|218531091|ref|YP_002421907.1| ribonuclease D [Methylobacterium chloromethanicum CM4]
 gi|218523394|gb|ACK83979.1| ribonuclease D [Methylobacterium chloromethanicum CM4]
          Length = 384

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 46/165 (27%), Gaps = 18/165 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D    L D +   +  +   + + +     V H++  +  ++       
Sbjct: 37  PKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMADESTVKVFHSARQDLEII--WLLGG 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +    +  T V A   G   +                  ++L+    K    +     + 
Sbjct: 95  LLPQPFFDTQVAAMVCGYGDS---------------VSYEQLVNDVAKARIDKSSRFTDW 139

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                +      Y   DVT    I++ L           +LD+ +
Sbjct: 140 SRRPLS-EAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWLDEEM 183


>gi|293347807|ref|XP_002726702.1| PREDICTED: rCG30986-like isoform 1 [Rattus norvegicus]
 gi|149024626|gb|EDL81123.1| rCG30986, isoform CRA_a [Rattus norvegicus]
          Length = 885

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 27/215 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQ 190
                        R  P           Y + D      I+ R+     +      +  Q
Sbjct: 425 -----------RIRPLP------EEMLNYARDDTHYLLYIYDRMRLELWERGNDQPVQLQ 467

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            +  R   + +          +       ++ + L
Sbjct: 468 VVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHL 502


>gi|118586342|ref|ZP_01543794.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni
           ATCC BAA-1163]
 gi|118433233|gb|EAV39947.1| DNA-dependent DNA polymerase III, epsilon subunit [Oenococcus oeni
           ATCC BAA-1163]
          Length = 177

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 21/139 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LF----AFGFDDHPVELW---DC 47
           M  L +DFET S    +   +      D  +      L     +F + +  +      D 
Sbjct: 1   MNFLAMDFETASSEPWSAVSLGLTIVRDNQIAQNWYSLIKPETSFSYWNTEINGLTADDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           +  P  P+V  +   L +    +V HN  F+  VLK     + L  P +  + T+ L+R 
Sbjct: 61  LDSPKFPEVWADIKNLYDDYPVVVGHNIRFDNNVLKQTLKYYGLKTPRYLSLDTVYLSRK 120

Query: 103 NGLP---SALKAVGEALKL 118
                    L  V   L L
Sbjct: 121 FQPGMVNHKLDTVVSDLGL 139


>gi|254550635|ref|ZP_05141082.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
          Length = 71

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 614 MMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKAEGYESKR 672
           ++     G   +L VHDE++ E    +      L    M     +   +PL+      + 
Sbjct: 9   LVRLIDEGQR-LLQVHDELLFEIAPGERERVEALVRDKMGGA--YPLDVPLEVSVGYGRS 65

Query: 673 Y 673
           +
Sbjct: 66  W 66


>gi|294084191|ref|YP_003550949.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663764|gb|ADE38865.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 409

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 41/201 (20%), Gaps = 41/201 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           L ID E     T                   + L   G D       D +   +  + L 
Sbjct: 50  LAIDTEFMRERTYY---------------PQLCLIQVG-DGTKAVAIDPLAKNLNLEPLW 93

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             + +  +  V H    +  +                T +     G              
Sbjct: 94  SLMRDESIIKVFHAGNQDMEIFLNEMGGL--PSPVYDTQIAGLVCG-----------HGD 140

Query: 119 SSQKMEEGKE-LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                   K  L     K         R              Y   DV    +I+  +  
Sbjct: 141 QIGYDSLVKSILGKNVDKTSRFTDWSKRPLT------DRQISYALDDVIYLAQIYPIMLD 194

Query: 178 LSSKEQELWYLDQTINDRGYC 198
             + E    +LD+        
Sbjct: 195 KIASENRTNWLDEEFKKFSDP 215


>gi|158291195|ref|XP_312669.4| AGAP002300-PA [Anopheles gambiae str. PEST]
 gi|157018260|gb|EAA07463.4| AGAP002300-PA [Anopheles gambiae str. PEST]
          Length = 969

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 48/180 (26%), Gaps = 34/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E              Y    C++  +    D    + D +       VL E  
Sbjct: 288 KEIAIDLE--------HHSYRSYQGFTCLMQLSTRTKD---YIVDALALRDELHVLNEVF 336

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
            +     V H S  +   L+      + +     T   AR        L+ + +    + 
Sbjct: 337 TDPKKLKVLHGSVSDIEWLQRDLG--LYLVNMFDTGEAARVLQFSRIGLQFLLKHYCNID 394

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R  P        F EY + D      I+ R+    
Sbjct: 395 TDKAFQLADW-------------RIRPIP------ENFIEYARKDTHYLLYIYDRMRNEL 435


>gi|163852332|ref|YP_001640375.1| ribonuclease D [Methylobacterium extorquens PA1]
 gi|163663937|gb|ABY31304.1| ribonuclease D [Methylobacterium extorquens PA1]
          Length = 384

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 46/165 (27%), Gaps = 18/165 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D    L D +   +  +   + + +     V H++  +  ++       
Sbjct: 37  PKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMADESTVKVFHSARQDLEII--WLLGG 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +    +  T V A   G   +                  ++L+    K    +     + 
Sbjct: 95  LLPQPFFDTQVAAMVCGYGDS---------------VSYEQLVNDVAKARIDKSSRFTDW 139

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                +      Y   DVT    I++ L           +LD+ +
Sbjct: 140 SRRPLS-EAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWLDEEM 183


>gi|70949124|ref|XP_744002.1| 3'-5' exonuclease [Plasmodium chabaudi chabaudi]
 gi|56523765|emb|CAH76355.1| 3'-5' exonuclease, putative [Plasmodium chabaudi chabaudi]
          Length = 383

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 21/167 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLK 58
             + +D E             K   +  V +      D  + ++D           + LK
Sbjct: 71  KIIGLDIE-----------GYKIGRNGTVSIIQVCAKD--IYIFDLYKCDNSYLFVKYLK 117

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E  EN ++  VAH+   + ++L   +N+++       T + A +  L  + K +   +  
Sbjct: 118 ELFENKNIIKVAHDCREDCSILFNQYNINLN--NIFDTQI-AYNLILKKSKKEL-YQISY 173

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                +                 L ++       + +    Y   DV
Sbjct: 174 DDLLYKCLFLNNNHKIYFHKIISLDNKIYLKRPIS-KELIHYAVQDV 219


>gi|186685790|ref|YP_001868986.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
 gi|186468242|gb|ACC84043.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
          Length = 306

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 76/282 (26%), Gaps = 33/282 (11%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-----DHPVELWDCVHDPVMPQ 55
           + TL+ID E               + +  + L     +        V L D +  P +  
Sbjct: 20  IKTLWIDTE----------VADYKSRNPRLSLIQVLDNPQDMSGDRVYLLDVLDQPNIIA 69

Query: 56  VLKE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL------ARSNGLPSA 108
              E  + N+ +  V HN+ ++   L              CTL +               
Sbjct: 70  EFIEKIMINSAIEKVFHNASYDLKFLGNK-----KAKNITCTLEMVKKIPYHILPLPNYQ 124

Query: 109 LKAVGEAL--KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
           LK +  AL    +  K E+  +   R    E  E  Y       +    L     K +  
Sbjct: 125 LKTIATALCSFNNIDKQEQTSDWGKRPLTEEQIEYAYLDCIYLAQIHSNLLSLQAKANPE 184

Query: 167 -VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
             T ++       S  EQ+   L+         +  A+     Q +           +  
Sbjct: 185 PATEDLTSLSTRYSQLEQQWKLLNSEFEHLQERMKKAM---QAQNISETSYHKLTSYDRT 241

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
           T     S          + L+  + L    +      L    
Sbjct: 242 TVKATFSELARLAQTQDIDLDFPITLTQKLQKDLGPNLEQLS 283


>gi|222474840|ref|YP_002563255.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
 gi|222418976|gb|ACM48999.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
          Length = 386

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E        +     Y     + L    +      + D + + +    L+E  ++
Sbjct: 28  LAIDTE------FVRSFNDYY---PRLCLLQMAYQGGQ-CVVDVLDERLDLSPLQEIFDD 77

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  V H+   +   L   F           T   +           + E         
Sbjct: 78  EGIYKVFHDCRQDLDALSQRFTRL--PRPIFDTQTAS----------MLCEYH----DNS 121

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
               +L+ +F   + ++ L+ R   +HR        Y   DVT   E+++ L  + + ++
Sbjct: 122 VGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKE 181

Query: 184 ELWYLDQTIN 193
            L +  + + 
Sbjct: 182 RLTWFLEEME 191


>gi|254486025|ref|ZP_05099230.1| ribonuclease D [Roseobacter sp. GAI101]
 gi|214042894|gb|EEB83532.1| ribonuclease D [Roseobacter sp. GAI101]
          Length = 385

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 53/200 (26%), Gaps = 41/200 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFG---FDDHPVELWDCVHDPVM 53
             + ID E     T                   + L        DD    L D +   + 
Sbjct: 21  DYVTIDTEFLRERTYYS---------------KLCLIQMAMPGTDDSGAVLVDPLAGDMS 65

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + L     +T V  V H +  +  +     +  +       T V A   G        G
Sbjct: 66  LEPLYALFRDTSVVKVFHAARQDLEIF--FVDAGVFPEPLFDTQVAAMVCGF-------G 116

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +          + L+ +       +     +             Y   DVT  R++++
Sbjct: 117 EQVGY--------ETLVRKIAHQAVDKTSRFTDWSRRPLTDAQAK-YALADVTHLRQVYE 167

Query: 174 RLEPLSSKEQELWYLDQTIN 193
            L     +     ++ + + 
Sbjct: 168 FLARKLEETGRARWVAEELE 187


>gi|192361069|ref|YP_001982899.1| ribonuclease D [Cellvibrio japonicus Ueda107]
 gi|190687234|gb|ACE84912.1| ribonuclease D [Cellvibrio japonicus Ueda107]
          Length = 378

 Score = 54.0 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 68/276 (24%), Gaps = 44/276 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLKEAL 61
           + +D E      +        A  + +        D                P  L+E L
Sbjct: 29  IAVDTE-----FMRTDTFYPIAGLLQI-------GDGKGCYLIDPLAIADWQP--LRELL 74

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEALKL 118
            +  V  V H+   +  V +     D+       T + A    L   L     V   L +
Sbjct: 75  LDGKVIKVLHSCSEDLEVFQRWL--DLVPSPLFDTQIGAAFANLGFGLGYANLVKTLLGI 132

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K E   + +              R     +        Y   DV     ++ +L  +
Sbjct: 133 EIPKDETRSDWLQ-------------RPLSQSQLK------YAALDVAHMLVVYGKLLQI 173

Query: 179 SSKEQELWYLDQTI----NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
               Q L ++                   A+         R +    L  L     + +R
Sbjct: 174 LKTSQRLEWVKSDCADLVEQARAPDHFDDAYQKVGFAWKLRPQELAVLRQLCIWRETQAR 233

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
             +  +  L  E  L      +    + L     + 
Sbjct: 234 QRDIPRNRLIKEPSLWDIARKKPRDLQQLQQIADIP 269


>gi|322708171|gb|EFY99748.1| exosome complex exonuclease Rrp6, putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 830

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 46/185 (24%), Gaps = 43/185 (23%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             + +D E     T + +               V L      D    +          +V
Sbjct: 243 KEIAVDLEHHDFRTYTGL---------------VCLMQVSTRDRDWIVDTLQPWRHKLEV 287

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALK-AVGE 114
           L +   +  V  V H +Y +   L+      + ++    T         P  +L   + +
Sbjct: 288 LNDVFADPSVVKVFHGAYMDMVWLQRDLG--LYVNGLFDTYFACNLLNYPGRSLAFLLSK 345

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +   + K  +  +                R  P           Y + D      I+  
Sbjct: 346 FVGFDADKQYQLADW-------------RIRPIP------EDMLYYARSDTHYLLYIYDN 386

Query: 175 LEPLS 179
           +    
Sbjct: 387 VRNEL 391


>gi|84517066|ref|ZP_01004422.1| ribonuclease D [Loktanella vestfoldensis SKA53]
 gi|84508961|gb|EAQ05422.1| ribonuclease D [Loktanella vestfoldensis SKA53]
          Length = 385

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 50/185 (27%), Gaps = 41/185 (22%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDD---HPVELWDCVHDPVMP 54
            + +D E     T                   + L    + D       L D + + +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQMAYRDAAGEDAVLVDPLAEGISL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L +   +  V  V H +  +  +     +  +       T V A   G        GE
Sbjct: 67  DPLYDLFRDPGVVKVFHAARQDLEIF--HVDAGVIPAPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                       + L+ +  K E  +     +            EY   DVT  R++++ 
Sbjct: 118 QAGY--------ETLVRKIAKAEVDKSSRFTDWSRRPLTDAQA-EYALADVTHLRDVYEY 168

Query: 175 LEPLS 179
           L    
Sbjct: 169 LANRL 173


>gi|240139668|ref|YP_002964145.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1]
 gi|240009642|gb|ACS40868.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1]
          Length = 384

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 46/165 (27%), Gaps = 18/165 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D    L D +   +  +   + + +     V H++  +  ++       
Sbjct: 37  PKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMADESTVKVFHSARQDLEII--WLLGG 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +    +  T V A   G   +                  ++L+    K    +     + 
Sbjct: 95  LLPQPFFDTQVAAMVCGYGDS---------------VSYEQLVNDVAKARIDKSSRFTDW 139

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                +      Y   DVT    I++ L           +LD+ +
Sbjct: 140 SRRPLS-EAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWLDEEM 183


>gi|67593930|ref|XP_665760.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54656583|gb|EAL35530.1| hypothetical protein Chro.50386 [Cryptosporidium hominis]
          Length = 875

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 48/177 (27%), Gaps = 31/177 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E              Y     V L       H   + D  +     Q+L E   N
Sbjct: 304 LAIDVE--------HHSNQSY--KGFVSLIQLSTRTHD-YIIDPFNLFNEIQMLNELTAN 352

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  V H S ++   L+   +  + I     T   AR    P                 
Sbjct: 353 PKILKVLHGSDYDIIWLQR--DFSVYIVNMFDTGQAARILNTPGG--------------- 395

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLS 179
              K L++ +C          +              EY +GD      I+  ++ L 
Sbjct: 396 YSLKNLLSIYC--SLDIDKRFQLADWRERPLSNELIEYARGDTHYLLYIYDIMKNLL 450


>gi|58697529|ref|ZP_00372780.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
 gi|58535998|gb|EAL59702.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
          Length = 284

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 53/196 (27%), Gaps = 34/196 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E     +L             + L    +      + D +   +    +K+ +
Sbjct: 22  KFIAVDTE-FIRNNLIYY--------PKLSLIQISY-GEKSFIVDALVPEIDLSFIKKIM 71

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA----RSNGLPSALKAVGEALK 117
            N  +T V H+   +   L   F           T V A      +              
Sbjct: 72  LNQGITKVFHSCRQDIESLLTVF--KCIPTPIFDTQVAAMFCHYYHDF------------ 117

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K+ E  + IA       +     R     +        Y   DV    ++++ L  
Sbjct: 118 IGYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLD------YAVNDVVHLYDLYQILCN 171

Query: 178 LSSKEQELWYLDQTIN 193
              +   + +  + + 
Sbjct: 172 KLEENNRMGWFQEEME 187


>gi|254411454|ref|ZP_05025231.1| FtsK/SpoIIIE family, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196181955|gb|EDX76942.1| FtsK/SpoIIIE family, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 862

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 20/100 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-----DHPVELWD-CVHDPVMPQV 56
           TL++D E                 +  + L     D          ++D   +  ++   
Sbjct: 21  TLWLDTE----------VADWQTSNPRLSLIQILADPTDRTGDRAYIFDVLDNPDIVRDF 70

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           + + + N ++  V HN+ F+   L              CT
Sbjct: 71  VAQIMVNPNIEKVFHNASFDLKFL----GGKHQAQNVTCT 106


>gi|149695529|ref|XP_001492550.1| PREDICTED: exosome component 10 [Equus caballus]
          Length = 886

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 43/186 (23%), Gaps = 33/186 (17%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115
           L E+  +  +  V H +  +   L+  F   + +     T   AR   L   +L  + + 
Sbjct: 352 LNESFTDPAIVKVFHGADSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKR 409

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                              K         R  P           Y + D      I+ ++
Sbjct: 410 Y------------CSVESNKQYQLADWRIRPLP------EEMLNYARDDTHYLLYIYDKM 451

Query: 176 EPLSSK------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                +             Q    +      +    D +      +      T+     +
Sbjct: 452 RLELWERGNDQPVQLQVVWQRSRDVCLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQ 511

Query: 224 SLTYGL 229
            L    
Sbjct: 512 LLFAWR 517


>gi|89900967|ref|YP_523438.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89345704|gb|ABD69907.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 233

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 36/151 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  +F+D ET     L+     +  E  CV LF                      A    
Sbjct: 1   MRQIFLDTETTG---LSADTGDRIIEIGCVELFKRKLTGNNKHFYLNPGRESHEDALRVH 57

Query: 39  D-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI------H 91
                 L D      +   L   +++ ++ I  HN+ F+   L     L           
Sbjct: 58  GITSAFLKDKPKFEAVADELLAYVKDAEIII--HNAPFDLGFLNKELALLGRPRFKEFVG 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSS 120
               TLV+A+        +L A+ + L + +
Sbjct: 116 SVTDTLVMAKEMFPGKRNSLNALCDRLGVDN 146


>gi|114767452|ref|ZP_01446239.1| ribonuclease D [Pelagibaca bermudensis HTCC2601]
 gi|114540462|gb|EAU43543.1| ribonuclease D [Roseovarius sp. HTCC2601]
          Length = 385

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 79/295 (26%), Gaps = 56/295 (18%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMP 54
            + +D E     T                   + L    +    D    L D +   +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLIQLAYPGQGDENAVLVDPLAGELSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L E   NT+V  V H +  +  +     +  +       T V A   G        GE
Sbjct: 67  EPLLELFRNTNVVKVFHAARQDLEIF--FIDHGVIPDPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ R  K    +     +            +Y   DVT  R I++ 
Sbjct: 118 QVGY--------ETLVKRIAKQGLDKSSRFTDWSRRPLTDAQ-KKYALADVTHLRVIYEY 168

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT------KLDQELESLTYG 228
           L     +     ++     + G   D     T  Q             +    +  L   
Sbjct: 169 LAAELERTGRARWV---AEELGVLTDPETYITRPQDAWQRVKTRSSSPRFLAIVRELAAF 225

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTET-TCQR-----VLSSNKKLTPQAIQVF 277
               ++     +  +F +  L     T+  T +      +L    +  P A  + 
Sbjct: 226 REDYAQSRNIPRNRVFKDDALTELASTKPVTMEDLGRSRLLLREARKGPIADGIL 280


>gi|121602632|ref|YP_988343.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
           KC583]
 gi|120614809|gb|ABM45410.1| DNA polymerase III, epsilon subunit [Bartonella bacilliformis
           KC583]
          Length = 234

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 28/146 (19%)

Query: 1   MATLFIDFETRS---PID-LTKCG----ICKYA--EDVCVIL--FAFGFDDHPVELWDCV 48
           M  +  D ET       D + + G    + +Y       V L        D  V +    
Sbjct: 1   MREIIFDTETTGLDKDNDRIIEIGCVEMVDRYLTGRQFHVYLNPQGVIIPDEVVAIHGLT 60

Query: 49  HD--------PVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICT 96
           ++          +   L E +      ++AHN+ F+ +     LK      I I   I T
Sbjct: 61  NERLKGEKKFDDIADELLEFI--DGAMMIAHNANFDISFLNAELKRVNKPLISIDNVIDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS 120
           L +AR      P++L  + +   + +
Sbjct: 119 LAMARRKFPMGPNSLDVLCKRFGIDN 144


>gi|256159482|ref|ZP_05457250.1| Rnd, ribonuclease D [Brucella ceti M490/95/1]
 gi|256254768|ref|ZP_05460304.1| Rnd, ribonuclease D [Brucella ceti B1/94]
 gi|261221947|ref|ZP_05936228.1| ribonuclease D [Brucella ceti B1/94]
 gi|265997910|ref|ZP_06110467.1| ribonuclease D [Brucella ceti M490/95/1]
 gi|260920531|gb|EEX87184.1| ribonuclease D [Brucella ceti B1/94]
 gi|262552378|gb|EEZ08368.1| ribonuclease D [Brucella ceti M490/95/1]
          Length = 385

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      DH   L D +   +        + + ++  V H +  +  ++      +
Sbjct: 37  PELCLIQMASPDHTA-LVDALAPGLDLAPFFRLMADEEIVKVFHAARQDIEIV-FHLG-N 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G          +     QK   GK L     K         R  
Sbjct: 94  LIPSPVFDTQVAAMVCGFG-----DAISYDQLMQK-VTGKHL----DKSSRFTDWRRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            + +        Y   DVT  R+I+  L+    KE    ++++ +
Sbjct: 144 SDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|139437245|ref|ZP_01771405.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
           25986]
 gi|133776892|gb|EBA40712.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
           25986]
          Length = 377

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 58/244 (23%), Gaps = 34/244 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E           + +      + L         V +   V D      L E + +
Sbjct: 22  IAVDTE----------FLRERTFHPRLCLVQIATPAESVAVDPLVIDD--LSPLAELMAD 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             VT V H    +  V+       +       T V A   G                ++ 
Sbjct: 70  ESVTKVFHACSQDMEVMLHTVG--VLPRPIFDTQVAAAFLG---------------ERQQ 112

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L+  FC     +     +            EY   DV      +  +     +  
Sbjct: 113 ISYGALVQTFCGVSLPKTESLTDWSRRPL-TDKQIEYAIDDVKYLIVAYTEMMSRLRELG 171

Query: 184 ELWYLDQTINDRG----YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
            + ++   +        Y  D   A    + ++            L       +      
Sbjct: 172 RVDWVLDELRPLADESHYRADRHEAFRKVKRINSCSRHQLGIARELAAWREDRAERRNIP 231

Query: 240 KTWL 243
           + W+
Sbjct: 232 RKWV 235


>gi|33241189|ref|NP_876131.1| putative ribonuclease D [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33238719|gb|AAQ00784.1| Ribonuclease D [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 214

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 36/204 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E          G+    +   + L     +   V              L+  +E+
Sbjct: 32  LAIDTE--------AMGLIHGRD--RLCLVQICDEQDNVACIKIQQHQTKANNLQSLMED 81

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA---RSNGLPSALKAVGEAL-KLS 119
           + +  V H + F+   +    NL+I ++   CT + +   R+      LK V   L  + 
Sbjct: 82  SAIEKVFHYARFDVAAIS--CNLNIAVNSIFCTKLASKIGRTYSPRHGLKEVILELVGIE 139

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                       E      EY   DV    +   +LE + 
Sbjct: 140 LDKQAQSSDWGR------------------VGELTEKQLEYATNDVRYLIQARNQLEKML 181

Query: 180 --SKEQELWYLDQTINDRGYCVDV 201
                 EL             +D+
Sbjct: 182 IREDRWELTKRCFECISVMSELDI 205


>gi|219669053|ref|YP_002459488.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
           hafniense DCB-2]
 gi|219539313|gb|ACL21052.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
           hafniense DCB-2]
          Length = 929

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 44/150 (29%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHP---VELWDCVHDPVMPQ-- 55
             + ID ET         G   Y  +  +I FA    ++                +P+  
Sbjct: 5   KIVVIDIETT--------GFDIY--NDEIIEFAALCIEEGEEAEAFSVLISPRRQVPERI 54

Query: 56  ----------------------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
                                  + +  ++    IV HN  F+   L+    +      W
Sbjct: 55  LRLTGISPEELKQAGSLQAYRDKILDLFQDA--IIVGHNVEFDLGFLEQALTIHFENTLW 112

Query: 94  ICTLVLARSNGLP---SALKAVGEALKLSS 120
             TL +AR          L  + ++L L+ 
Sbjct: 113 -DTLEIARILYPNMPKYKLGDLTKSLGLTP 141


>gi|145636341|ref|ZP_01792010.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
 gi|145270506|gb|EDK10440.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittHH]
          Length = 382

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 95/328 (28%), Gaps = 64/328 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  Y     + L    +D   V L D        P      L 
Sbjct: 33  VALDTE--------FMRVSTYF--PKLGLIQL-YDGERVSLIDPLAITDFSP--FIALLA 79

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-EALKLS 119
           N  V  V H+   +  V    F  D      I T ++AR  GL   + L  +  + L + 
Sbjct: 80  NPKVLKVLHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVE 137

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K       I R                       +  +Y  GDV     ++  LE   
Sbjct: 138 IDKGATRTNWIKRPLS-------------------DIQLQYAAGDVWYLLPLYHILEKEL 178

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           +K      +            +A  H L +    +          L    +S  R L + 
Sbjct: 179 AKTPWEQAVRDDCELV-----LAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRILAQW 233

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA------------------IQVFNNRM 281
           +  + +E  L L  + ++     L    K  P+                    ++     
Sbjct: 234 RQNVAIERDLALSYIVKS---EHLWKVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLS 290

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
           +A R +       +E ++ D R + T++
Sbjct: 291 QARRISSNDYPKPIERISEDPRYKKTIR 318


>gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens]
          Length = 388

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 71/246 (28%), Gaps = 28/246 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L         V +        +   + E + N +V  V H +  +  ++       
Sbjct: 35  PELCLVQMASPTLEVLVDPLAKGIDLT-PMFELMANPNVVKVFHAARQDIEII-YHLG-G 91

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +  H    T V A   G   +      +     QK++       +  K         R  
Sbjct: 92  LIPHPIFDTQVAAMVCGFGDS-----ISYDQLVQKIKNV-----QIDKSSRFTDWSRRPL 141

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV------DV 201
              +        Y   DVT  R+++  L+    +E    +L + +N            D 
Sbjct: 142 TEKQLD------YALADVTHLRDVYLSLKAQLEREGRSLWLTEEMNILESRDTYDMHPDD 195

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
           A     +++    +      L+ +       +R     ++ +  + G+      +     
Sbjct: 196 AWLRLKSRL---RKPTELAILKFVAAWREREARSRNVPRSRVLKDDGIFEIAQQQPKDAE 252

Query: 262 VLSSNK 267
            LS  +
Sbjct: 253 ALSRLR 258


>gi|256822615|ref|YP_003146578.1| ribonuclease D [Kangiella koreensis DSM 16069]
 gi|256796154|gb|ACV26810.1| ribonuclease D [Kangiella koreensis DSM 16069]
          Length = 384

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 70/251 (27%), Gaps = 37/251 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E     D T     + A      L    +D   + L D +    +   L E  
Sbjct: 35  KELAVDTE----FDRTNTYFHRLA------LIQI-YDGKEIYLIDPLAFDDL-SALTELF 82

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +T V    H+   +   L   +  +    +   T + A       +L  +G ++   + 
Sbjct: 83  ASTSVVKALHSCSEDLEALYHQYGFEFN--QVFDTQIAA-------SLDGIGLSVGYGNI 133

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L     K  T      R         +    Y   DV     ++ RL      
Sbjct: 134 VE---HFLSVVLDKEHTKTDWLQRPLS------QEQRVYAAQDVQYLMPVYYRLRDSL-- 182

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
             E    +  I D    V+   A  +      E     +    L    ++  + L + + 
Sbjct: 183 -LEKGLFECVIED----VNSIFAAIIQADDYAEAYLKVKGAFRLNQFQLNRLQKLAQWRE 237

Query: 242 WLFLETGLHLE 252
            L  +  +   
Sbjct: 238 TLARDNNIPKT 248


>gi|56416471|ref|YP_153545.1| ribonuclease D [Anaplasma marginale str. St. Maries]
 gi|56387703|gb|AAV86290.1| ribonuclease D [Anaplasma marginale str. St. Maries]
          Length = 401

 Score = 54.0 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E        +     Y     + L    +      + D + + +    L+E  ++
Sbjct: 28  LAIDTE------FVRSFNDYY---PRLCLLQMAYQGGQ-CVVDVLDERLDLSPLQEIFDD 77

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  V H+   +   L   F           T   +           + E         
Sbjct: 78  EGIYKVFHDCRQDLDALSQRFTRL--PRPIFDTQTAS----------MLCEYH----DNS 121

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
               +L+ +F   + ++ L+ R   +HR        Y   DVT   E+++ L  + + ++
Sbjct: 122 VGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKE 181

Query: 184 ELWYLDQTIN 193
            L +  + + 
Sbjct: 182 RLTWFLEEME 191


>gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 234

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 45/161 (27%), Gaps = 36/161 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-----------------------AFGF 37
           M  +  D ET     L      +  E   V L                        A   
Sbjct: 1   MREIVFDTETTGLERLE----DRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAV 56

Query: 38  DD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHR 92
                 +L D      +     E +      +VAHN+ F+       L      +I    
Sbjct: 57  HGISNEQLLDKPVFAEILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEH 114

Query: 93  WICTLVLARSNGL--PSALKAVGEALKLSSQKMEEGKELIA 131
            + TL LAR      P++L A+ +   + +        L+ 
Sbjct: 115 IVDTLALARRKHPMGPNSLDALCKRYGIENSHRTLHGALLD 155


>gi|89894618|ref|YP_518105.1| hypothetical protein DSY1872 [Desulfitobacterium hafniense Y51]
 gi|89334066|dbj|BAE83661.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 929

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 43/150 (28%), Gaps = 44/150 (29%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHP---VELWDCVHDPVMPQ-- 55
             + ID ET         G   Y  +  +I FA    ++                +P+  
Sbjct: 5   KIVVIDIETT--------GFDIY--NDEIIEFAALCIEEGEEAEAFSVLISPRRQVPERI 54

Query: 56  ----------------------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
                                  + +  ++    IV HN  F+   L+    +      W
Sbjct: 55  LRLTGISPEELKQAGSLHAYRDKILDLFQDA--IIVGHNVEFDLGFLEQALTIHFENTLW 112

Query: 94  ICTLVLARSNGLP---SALKAVGEALKLSS 120
             TL +AR          L  + ++L L+ 
Sbjct: 113 -DTLEIARILYPNMPKYKLGDLTKSLGLTP 141


>gi|90421821|ref|YP_530191.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB18]
 gi|90103835|gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 231

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 48/162 (29%), Gaps = 38/162 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV +F                      AF   
Sbjct: 1   MREIVLDTETTGLDPLRG---DRLVEIGCVEIFNRMPTGQTFHRYINPERDMPQEAFAVH 57

Query: 39  DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIH 91
               E            +     E +   +  +V HN+ F+   + A         IP  
Sbjct: 58  GLSAEFLSTKPLFA--EVVDEFLEFIA--EAPLVIHNASFDIGFINAELGKIARPPIPRD 113

Query: 92  RWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIA 131
           R + TL+LAR      +  L  +     + + +  +   L+ 
Sbjct: 114 RLVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLD 155


>gi|91977418|ref|YP_570077.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
 gi|91683874|gb|ABE40176.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
          Length = 392

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 37/154 (24%), Gaps = 18/154 (11%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
                + D +   +  +   + + N +V  V H +  +  ++     +    H    T V
Sbjct: 47  PDEAVVVDTLAPGIDLKPFFDLMANENVLKVFHAARQDIEIVWHRAGIV--PHPIFDTQV 104

Query: 99  LARSNGLPSA--LKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            A   G   +     + E +      K     +   R    E                  
Sbjct: 105 AAMVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLRDV--- 161

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
               +   D  +      +    S    E   + 
Sbjct: 162 ----FAALDADL------KKRDRSDWVSEEMEIL 185


>gi|307297035|ref|ZP_07576851.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
 gi|306877561|gb|EFN08789.1| DNA polymerase III, epsilon subunit [Sphingobium chlorophenolicum
           L-1]
          Length = 230

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 53/178 (29%), Gaps = 37/178 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------ 54
           M  +  D ET            +  E  C+ LF                   MP      
Sbjct: 1   MREIIFDTETTGFDP---ASGDRLVEIGCIELFN-RVPTGRTFHAYYNPQRSMPAAAEAV 56

Query: 55  ------------------QVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIHR 92
                             Q L   LE++ +  VAHN+ F+   L     L    ++ + R
Sbjct: 57  HGLSDGFLRDKPLFGHGVQELLAFLEDSHL--VAHNARFDFGFLNHELKLCGLPEVSMDR 114

Query: 93  WICTLVLARSNGLP--SALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNK 147
            I T+ +AR        +L A+     +  S +++ G  L A        E    R  
Sbjct: 115 MIDTVAIARQIHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAQLYIELTGGRQI 172


>gi|260582345|ref|ZP_05850138.1| ribonuclease D [Haemophilus influenzae NT127]
 gi|260094713|gb|EEW78608.1| ribonuclease D [Haemophilus influenzae NT127]
          Length = 380

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 87/295 (29%), Gaps = 53/295 (17%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           +D   V L D        P      L N  V  + H+   +  V    F  D      I 
Sbjct: 55  YDGKHVSLIDPLAITDFSP--FVALLANPKVLKILHSCSEDLLVFLQEF--DQLPRPMID 110

Query: 96  TLVLARSNGL--PSALKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           T ++AR  GL   + L  +  + L +   K       I R                    
Sbjct: 111 TQIMARFLGLGTSAGLAKLAQQYLNIEIDKGATRTNWIKRPLS----------------- 153

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
              +  +Y  GDV     ++  LE   +K      +            +A  H L +   
Sbjct: 154 --DIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELV-----LAKTHKLQERDS 206

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
            +          L    +S  R L + +  + +E  L L  + ++     L    K  P+
Sbjct: 207 EKAYLDIPNAWKLNPLELSRLRILAQWRQNVAIERDLALSYIVKS---EHLWKVAKNNPR 263

Query: 273 A------------------IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
                               ++     +A R +       +E ++ D R + T+Q
Sbjct: 264 NTSEMLEMGLTENEVRVRGKKILQLLAQARRISSNDYPKSIERISEDPRYKKTIQ 318


>gi|167600398|ref|YP_001671898.1| DNA polymerase part I [Pseudomonas phage LUZ24]
 gi|161168261|emb|CAP45426.1| DNA polymerase part I [Pseudomonas phage LUZ24]
          Length = 169

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 37/121 (30%), Gaps = 29/121 (23%)

Query: 68  IVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGL----PSALKAVGEALKLSSQK 122
           +V HN   ++  VL+    + IP  R   TLV +R          +L A G+ LK     
Sbjct: 58  VVGHNILDYDNRVLEKLHGIIIPPDRSYDTLVASRLTWPDRPQGHSLGAWGKFLK----- 112

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                      C           +            EYC  D  V+  +F  L  +    
Sbjct: 113 -----------CHKGDFNDFSKFS--------EEMFEYCLQDGVVSHALFNYLLRVLGMT 153

Query: 183 Q 183
            
Sbjct: 154 W 154


>gi|222612881|gb|EEE51013.1| hypothetical protein OsJ_31642 [Oryza sativa Japonica Group]
          Length = 877

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/280 (10%), Positives = 69/280 (24%), Gaps = 40/280 (14%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L           +        +   L+E  ++     V H +  +   L+  F + +   
Sbjct: 276 LMQISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYV--C 333

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T   +R   +                     + L+  FC    ++     +     
Sbjct: 334 NLFDTGQASRILQMDRN----------------SLEHLLHHFCGVTANKEYQSADWRLRP 377

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTI----NDRGYCVDVALAH 205
                  +Y + D      I+  +          E   L +             +  L  
Sbjct: 378 LP-DEMIKYAREDTHYLLYIYDLMRLRLVKESSDENDLLLEVYKRSKEICLQLYEKELLT 436

Query: 206 TLNQIVDVERTKLDQELESLT--YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
             + +      + + +   L+    +      + + +      TG  L +    T   + 
Sbjct: 437 HSSYLYIHGLKENEFDARQLSVLANIYKWRDSVARGED---ESTGYILPNK---TLLEIA 490

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
                 T +  ++        +S    L   +  + S  R
Sbjct: 491 KQMPATTGRLKRIV-------KSKNSYLERHLGHVISTIR 523


>gi|229815608|ref|ZP_04445935.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
           13280]
 gi|229808838|gb|EEP44613.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
           13280]
          Length = 377

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 69/292 (23%), Gaps = 50/292 (17%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + ID E     T                   + L      D  V +     D + P  L 
Sbjct: 22  IAIDTEFLREKTY---------------HAKLCLVQVATPDECVVIDPLAIDDLGP--LA 64

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E + + D   V H    +  VL               T V A   G  +           
Sbjct: 65  ELMTDVDTLKVFHACSQDMEVLCHALGSV--PAPIFDTQVAAGFLGERA----------- 111

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L++ FC     +     +      + +   EY   DV    + ++ +E  
Sbjct: 112 ----QCSYHNLVSTFCGVSLPKTESLTDWSRRPLSPKQ-IEYALDDVRYLIDAYRVIESK 166

Query: 179 SSKEQELWYLDQTINDRG----YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                   ++   I        Y  D   A    + V+    +       L       + 
Sbjct: 167 LHSLGRTAWVRDEIRPLADPAHYRSDPRAAFKRVKRVNACTRRQLAVARELASWREQRAE 226

Query: 235 CLEKLKTW-LFLETGLHLEDLTETTCQRV-----LSSNKKLTPQAIQVFNNR 280
             +  + W +  E  L L      T +                +       R
Sbjct: 227 TRDIPRKWVMSDEVLLALCKRAPQTVEDFRAVRGTEQLSARDVEVALDAIAR 278


>gi|110289135|gb|AAP53938.2| Nucleolar protein, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 902

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/280 (10%), Positives = 69/280 (24%), Gaps = 40/280 (14%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L           +        +   L+E  ++     V H +  +   L+  F + +   
Sbjct: 301 LMQISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYV--C 358

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T   +R   +                     + L+  FC    ++     +     
Sbjct: 359 NLFDTGQASRILQMDRN----------------SLEHLLHHFCGVTANKEYQSADWRLRP 402

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLDQTI----NDRGYCVDVALAH 205
                  +Y + D      I+  +          E   L +             +  L  
Sbjct: 403 LP-DEMIKYAREDTHYLLYIYDLMRLRLVKESSDENDLLLEVYKRSKEICLQLYEKELLT 461

Query: 206 TLNQIVDVERTKLDQELESLT--YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
             + +      + + +   L+    +      + + +      TG  L +    T   + 
Sbjct: 462 HSSYLYIHGLKENEFDARQLSVLANIYKWRDSVARGED---ESTGYILPNK---TLLEIA 515

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGR 303
                 T +  ++        +S    L   +  + S  R
Sbjct: 516 KQMPATTGRLKRIV-------KSKNSYLERHLGHVISTIR 548


>gi|110679520|ref|YP_682527.1| ribonuclease D [Roseobacter denitrificans OCh 114]
 gi|109455636|gb|ABG31841.1| ribonuclease D [Roseobacter denitrificans OCh 114]
          Length = 387

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 53/195 (27%), Gaps = 41/195 (21%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVM 53
             + +D E     T                   + L        DD    + D +   + 
Sbjct: 21  DYVTVDTEFLRERTYYS---------------KLCLIQLAMPGEDDSTGCIVDPLAPGLS 65

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + L     +T V  V H +  +  +     + ++       T V A   G        G
Sbjct: 66  LEPLYALFRDTSVVKVFHAARQDLEIF--YVDAEVFPEPLFDTQVAAMVCGF-------G 116

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +          + L+ R  K    +     +             Y   DVT  RE+++
Sbjct: 117 EQVGY--------ETLVRRIAKKPLDKTSRFTDWSRRPLTDAQMK-YALADVTHLREVYE 167

Query: 174 RLEPLSSKEQELWYL 188
            L     +     ++
Sbjct: 168 FLAEKLEETGRSRWV 182


>gi|329122266|ref|ZP_08250854.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
 gi|327473827|gb|EGF19244.1| ribonuclease D [Haemophilus aegyptius ATCC 11116]
          Length = 399

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 97/332 (29%), Gaps = 65/332 (19%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLK 58
           M + + +D E           +  Y     + L    +D   V L D        P    
Sbjct: 48  MKSAVALDTE--------FMRVSTYF--PKLGLIQL-YDGERVSLIDPLAITDFSP--FV 94

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-EA 115
             L N  V  + H+   +  V    F  D      I T ++AR  GL   + L  +  + 
Sbjct: 95  ALLSNPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQY 152

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +   K       I R                       +  +Y  GDV     ++  L
Sbjct: 153 LNIEIDKGATRTNWIKRPLS-------------------DIQLQYAAGDVWYLLPLYHIL 193

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           E   +K      +            +A  H L +    +          L    +S  R 
Sbjct: 194 EKELAKTPWEQAVRDDCELV-----LAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRV 248

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA------------------IQVF 277
           L + +  + +E  L L  + ++     L    K  P+                    ++ 
Sbjct: 249 LGQWRQNVAIERDLALSYIVKS---EHLWKVAKNNPRNTSEMLEMGLTENEVRVRGKKIL 305

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
               +A R +       +E ++ D R + T++
Sbjct: 306 QLLSQARRISSNDYPKSIERISEDPRYKKTIR 337


>gi|301059567|ref|ZP_07200479.1| DEAD/DEAH box helicase [delta proteobacterium NaphS2]
 gi|300446332|gb|EFK10185.1| DEAD/DEAH box helicase [delta proteobacterium NaphS2]
          Length = 973

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 58/211 (27%), Gaps = 38/211 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD------CVHDPVMPQ 55
             LF D ET+               +  ++  +         L+D         +     
Sbjct: 782 RMLFFDLETQ-----KTAQDVGGWRNTHLMRISVAV------LFDSLENRFLAFEEDRID 830

Query: 56  VLKEALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
            L   L+  D  +V  N   F+  VL A    ++         +LA         + +G 
Sbjct: 831 DLVNHLKEGD-LVVGFNIIGFDYKVLGAYTEQNLNALPTFD--ILA------DIHERLGF 881

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L L          L                 +   +       EYC+ DV  TR++F  
Sbjct: 882 RLGLDH--------LATETLGRGKTAHGLQAVEWFRQGEMEKLTEYCRHDVAATRDLFHY 933

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
                        +D  +  R   VD  LA 
Sbjct: 934 GLEKGHLVYRKKGVDARLRLR---VDWDLAQ 961


>gi|168010031|ref|XP_001757708.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690984|gb|EDQ77348.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 294

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 58/186 (31%), Gaps = 17/186 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G         + +    FDD  V L D  +    + Q  K  L
Sbjct: 13  VIGFDCE---GVDLARYG--------RLCIMQLAFDDA-VYLVDAVMGGNSLMQACKLGL 60

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+  V  V H+   +   L   F   I ++    T +           K V +       
Sbjct: 61  ESPYVIKVCHDCKRDSEAL--YFQYGIKLNNVFDTQIAYTLLKEQHGKKWVPDDYISFVD 118

Query: 122 KMEEGKEL-IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLS 179
            + + +   +    K E    L    +      W  +       DV     I++R+    
Sbjct: 119 LLADERYCGMIYDEKEEVRVLLRKDPQFWAHRPWTVMMKRVAADDVRFLLRIYERMVKSL 178

Query: 180 SKEQEL 185
           ++  + 
Sbjct: 179 TELSKW 184


>gi|261406087|ref|YP_003242328.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
 gi|261282550|gb|ACX64521.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           Y412MC10]
          Length = 958

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 41/148 (27%), Gaps = 32/148 (21%)

Query: 1   MATLFIDFETR---SPIDLTKCGICKYAED------------------VCVILFAFGFDD 39
           M    +DFET    S  ++ + G+    ED                    +     G  D
Sbjct: 1   MKFAVLDFETTGNQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLT-GISD 59

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICT 96
             V   D      M   L   L++  V +V HN  F+   L+             R + T
Sbjct: 60  SDVA--DAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDT 115

Query: 97  LVLARSNG---LPSALKAVGEALKLSSQ 121
           +   +          L  V     L   
Sbjct: 116 MHFLKICFPSLPSYQLGMVSSHFGLEHD 143


>gi|183220183|ref|YP_001838179.1| ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910303|ref|YP_001961858.1| ribonuclease D-like [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167774979|gb|ABZ93280.1| Ribonuclease D-related [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167778605|gb|ABZ96903.1| Ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 212

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 61/209 (29%), Gaps = 37/209 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E          G+    +   + +       + V L   +        +++  
Sbjct: 29  DRLAVDCE--------MMGLNPRRD--RLCVVQISDSKNKVALVQILPGQKEAPHIQKLF 78

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+ ++T + H +  + T L+A   + +      CT + ++          +       + 
Sbjct: 79  ESKEITKIFHFARMDMTFLRARLGIKVQ--NVFCTKIASK----------LARTY---TD 123

Query: 122 KMEEGKELIARF-----CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K    KELI  F      K         +     +        Y   DV     +   L 
Sbjct: 124 K-HGLKELIREFFEENIDKKNQSSDWGKKILTKDQVD------YASTDVRFLISLESILT 176

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAH 205
            +  +E      ++        V++ L  
Sbjct: 177 EMMIRENRFTIAEKCFGFLETQVELDLLE 205


>gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
 gi|210159428|gb|EEA90399.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
          Length = 377

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 55/236 (23%), Gaps = 44/236 (18%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + ID E     T                   + L      D  V +     D      L 
Sbjct: 22  IAIDTEFLRERTY---------------HAKLCLVQVATPDECVVIDPLTIDD--LSPLA 64

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E + + D   V H    +  VL       +       T V A   G  +           
Sbjct: 65  ELMADVDTLKVFHACSQDMEVLVHTLG--VCPAPIFDTQVAAGFLGERA----------- 111

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L+  FC     +     +      + +   EY   DV    + ++ +E  
Sbjct: 112 ----QCSYHNLVHSFCGVSLPKTESLTDWSRRPLSPQQ-IEYAVDDVRYLIDAYRVIESK 166

Query: 179 SSKEQELWYLDQTINDRG----YCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                   ++   I        Y  D   A    + ++    +       L     
Sbjct: 167 LHSLGRTAWVRDEIRPLADPAHYRSDPRSAFKRVKRINACTRRQLAVARELAAWRE 222


>gi|209885458|ref|YP_002289314.1| ribonuclease D [Oligotropha carboxidovorans OM5]
 gi|209873654|gb|ACI93450.1| ribonuclease D [Oligotropha carboxidovorans OM5]
          Length = 386

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 48/149 (32%), Gaps = 18/149 (12%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
               + D + + +  +   + + N  V  V H +  +  ++    N+    H    T V 
Sbjct: 48  DEAVVVDALAEGIDLKPFFDLMANEKVLKVFHAARQDIEIVWHLANIV--PHPVFDTQVA 105

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           A   G   ++       +++  K+++         +  T                +    
Sbjct: 106 AMVLGYGDSIAYDQLVGRITGHKLDKTHRFTDWSRRPLT----------------QEQTT 149

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           Y   DVT  R++F  L+    K     ++
Sbjct: 150 YALADVTHLRDVFLVLDADLKKRNRADWV 178


>gi|163745117|ref|ZP_02152477.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45]
 gi|161381935|gb|EDQ06344.1| DNA polymerase III, epsilon subunit [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 52/185 (28%), Gaps = 45/185 (24%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMP 54
           M  + +D ET         G    + D  ++      +                 +  MP
Sbjct: 1   MREIVLDTETT--------GFDPESGD-RIVEIG-AVELMNHMATGETYHQYINPERGMP 50

Query: 55  QVLK-------EALENT----DVTI-----------VAHNSYFERTVLK---ACFNLD-I 88
           +          + L +      +             + HN+ F+   L        L  I
Sbjct: 51  EEAFQVHGLGDDFLRDKPKFAQIGKSFLDFIGTSKLIIHNAAFDIKFLNAELRWMGLPQI 110

Query: 89  PIHRWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDR 145
           P  + + TL +A  R  G P++L A+     + +      G  L +        E +  R
Sbjct: 111 PWEQALDTLEIARKRFPGSPASLDALCRRFGIDNTSRTLHGALLDSEILAEVYLELIGGR 170

Query: 146 NKPNH 150
                
Sbjct: 171 QPDFA 175


>gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
 gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
          Length = 483

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 29/167 (17%)

Query: 5   FIDFETRSPID----LTKCGICKYAEDVCVIL-----------FAFGFDDHPVELWDCVH 49
           F+D ET         +T+ GI ++     V+             +   +       D V 
Sbjct: 15  FLDIETTGGNPSHDRITEIGI-RFWRAGAVVGEWQTLVNPETRISPFIESLTGITNDMVA 73

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
           D  + + + E LE    D   VAHN+ F+   +K       L +   + +CT+ L+R   
Sbjct: 74  DAPVFEDIAEVLEKQLKDTIFVAHNARFDYGFIKAEFRRLGL-LFSAKVLCTVKLSRKLY 132

Query: 105 LP---SALKAVGEALKLS----SQKMEEGKELIARFCKGETHECLYD 144
                  + A+ E   L      + + +   ++A F      +    
Sbjct: 133 PGFRRHNMDALIERHGLEQVQRHRALGDVAAMMAFFEHALVEKGSGA 179


>gi|126328720|ref|XP_001364275.1| PREDICTED: similar to exosome component 10, isoform 2 [Monodelphis
           domestica]
          Length = 836

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 50/169 (29%), Gaps = 26/169 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+  +  +  V H +
Sbjct: 288 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDLYILNESFTDPSIVKVFHGA 344

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 345 DMDIEWLQKDFG--LYVVNMFDTHQAARILNLGRHSLDHLLKLYCNVESNKQYQLADW-- 400

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                        R  P           Y + D      I+ ++     
Sbjct: 401 -----------RIRPLP------EEMFNYARHDTHYLLYIYDKMRSDLW 432


>gi|300024773|ref|YP_003757384.1| DNA polymerase III subunit epsilon [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526594|gb|ADJ25063.1| DNA polymerase III, epsilon subunit [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 237

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 41/182 (22%)

Query: 1   MATLFIDFETRSPIDLTK----------------CGICKY----------AEDVCVILFA 34
           M  + +D ET      T                  G+  +           E   V   +
Sbjct: 1   MREIVLDTETTGLDPKTGDRLIEIGGIEIINRIPTGVEFHRFINPERNVPMEAQNVHGIS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPI 90
                    L        + +     + +    +V HN+ F+   L     L     +  
Sbjct: 61  ------TEFLIGKPLFREVYRDFLAFIGDD--ILVIHNAQFDVNFLNHELGLVGEKPLSF 112

Query: 91  HRWICTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNK 147
            R + TL LAR      P++L A+ +   + + Q+ + G  + +        E L +R  
Sbjct: 113 DRVVDTLALARRRHPAGPNSLDALCKRYGIDTSQRTKHGAIVDSLLLAEVYVELLGERQA 172

Query: 148 PN 149
             
Sbjct: 173 TF 174


>gi|254562078|ref|YP_003069173.1| ribonuclease D [Methylobacterium extorquens DM4]
 gi|254269356|emb|CAX25322.1| Ribonuclease D (RNase D) [Methylobacterium extorquens DM4]
          Length = 384

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 46/165 (27%), Gaps = 18/165 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D    L D +   +  +   + + +     V H++  +  ++       
Sbjct: 37  PKLCLIQMAGPDGFACLVDPLAKDLDLKPFFDLMADESTVKVFHSARQDLEII--WLLGG 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +    +  T V A   G   +                  ++L+    K    +     + 
Sbjct: 95  LLPQPFFDTQVAAMVCGYGDS---------------VSYEQLVNDVAKARIDKSSRFTDW 139

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                +      Y   DVT    I++ L           +LD+ +
Sbjct: 140 SRRPLS-EAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWLDEEM 183


>gi|310642523|ref|YP_003947281.1| dnaq family exonuclease/ding family helicase [Paenibacillus
           polymyxa SC2]
 gi|309247473|gb|ADO57040.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           polymyxa SC2]
          Length = 960

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 38/170 (22%)

Query: 1   MATLFIDFETR---SPIDLTKCGICKYAED------------------VCVILFAFGFDD 39
           M    +DFET    S  D+ + G+     D                    +     G  D
Sbjct: 1   MKFAVLDFETTGTQSADDIIQVGLAIIDHDNSISRVYGSYVNPGRSIPPFITGLT-GITD 59

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICT 96
             V+  D      M   L   L++  V +V HN  F+   L++            R + T
Sbjct: 60  DDVK--DAPALEEMMMELVPMLDD--VVLVGHNVAFDFNFLQSALDRCGYLPFSGRILDT 115

Query: 97  L----VL-----ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
           +    ++     +   G  S+   +       +         +   C GE
Sbjct: 116 MDFLKIMFPSLSSYQLGFVSSEFGLAHDRPHQADSDALATAEVFLKCLGE 165


>gi|126328718|ref|XP_001364197.1| PREDICTED: similar to exosome component 10, isoform 1 [Monodelphis
           domestica]
          Length = 861

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 50/169 (29%), Gaps = 26/169 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+  +  +  V H +
Sbjct: 288 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDLYILNESFTDPSIVKVFHGA 344

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  +   
Sbjct: 345 DMDIEWLQKDFG--LYVVNMFDTHQAARILNLGRHSLDHLLKLYCNVESNKQYQLADW-- 400

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                        R  P           Y + D      I+ ++     
Sbjct: 401 -----------RIRPLP------EEMFNYARHDTHYLLYIYDKMRSDLW 432


>gi|47228827|emb|CAG07559.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 550

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 52/192 (27%), Gaps = 25/192 (13%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L      +    + D +       +L EA  +  +  V H +  +   L+  F   + + 
Sbjct: 295 LMQISTREED-FIIDTLELRSEMYILNEAFTDPAIVKVFHGADSDIEWLQRDFG--LYVV 351

Query: 92  RWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           R   T   +R+  L   +L  +      ++S K  +  +                R  P 
Sbjct: 352 RLFDTHQASRALNLARHSLDHLLTHFCNVASDKRYQLADW-------------RIRPLP- 397

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
                    +Y + D      I+  +                        D++L   +  
Sbjct: 398 -----EEMVQYARADTHYLLYIYDCVRAQLLDFNHGQPGLLKSVWDRSR-DISLKKYMKP 451

Query: 210 IVDVERTKLDQE 221
           I   E     Q 
Sbjct: 452 IFTEESYLELQR 463


>gi|226939810|ref|YP_002794883.1| DnaQ [Laribacter hongkongensis HLHK9]
 gi|226714736|gb|ACO73874.1| DnaQ [Laribacter hongkongensis HLHK9]
          Length = 240

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 46/165 (27%), Gaps = 43/165 (26%)

Query: 1   MATLFIDFETRSPID-----------------LTKCGICKYAE-------DV-CVILFAF 35
           M  + +D ET                      LT   +  Y         D   V   + 
Sbjct: 1   MRQIILDTETTGLDPQSHRLIEVAGLEMVNRKLTGRHLHLYIHPQRDIDPDAQRVHGISL 60

Query: 36  G-FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP---- 89
              +  PV          +   + + L + ++ I  HN+ F+   L      + +P    
Sbjct: 61  DMLEGKPVF-------KAVAGEIADFLRDAELII--HNAAFDIGFLNAEFARVGLPATQK 111

Query: 90  -IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                I TL +AR         L A+ +   +          LI 
Sbjct: 112 VAGNVIDTLAMAREIFPGKRNNLDALCDRFDIDRSNRTLHGALID 156


>gi|261414901|ref|YP_003248584.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371357|gb|ACX74102.1| 3'-5' exonuclease [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302327506|gb|ADL26707.1| putative ribonuclease D [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 386

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 52/191 (27%), Gaps = 37/191 (19%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-EALEN 63
            +D E  S        +  Y     + L      +H   + D +    +  + K  A++ 
Sbjct: 30  AVDTEADS--------MYHYT--ARLCLIQITIGEHH-YIVDPLCGLDLAPLFKARAMQ- 77

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEALKLSSQK 122
              T++ H + ++  +L   +           T++ A+  G     L  + +       K
Sbjct: 78  ---TLIFHGADYDLRLLWQTYGFS--PKSIFDTMLAAKILGEQHLGLADLVKEYFGDELK 132

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                                D              EY   D     E+   L     + 
Sbjct: 133 ---------------KENQRADWTIRPLSLD---MCEYAIHDTFYLHELCAILAEKLQQA 174

Query: 183 QELWYLDQTIN 193
             + +L +  N
Sbjct: 175 GRMNWLTEQCN 185


>gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
 gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain
           [Granulicatella adiacens ATCC 49175]
          Length = 1444

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 11/111 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL-- 105
             + +   E   + D  +VAHN+ F+   L   +    ++      I TL L+R      
Sbjct: 493 EQVLKEFHEF--SKDCILVAHNASFDMGFLNTGYENVGIERTEQPVIDTLELSRMLHPQL 550

Query: 106 -PSALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
               L  + +   +      +     E     C     E   D     H E
Sbjct: 551 KSHRLNTLAKRYNVALEQHHRAVYDSETTGYLCHIFLKEAANDHQLLYHDE 601


>gi|299133202|ref|ZP_07026397.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
 gi|298593339|gb|EFI53539.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
          Length = 230

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 32/159 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
           M  + +D ET     L      +  E  CV +F                +  MPQ     
Sbjct: 1   MREIVLDTETTGLDALRG---DRLVEIGCVEMFNH-MPTGQTYHVYINPERDMPQEAFAV 56

Query: 59  -----EALENT---------------DVTIVAHNSYFERTV----LKACFNLDIPIHRWI 94
                E L +                D  ++ HN+ F+       L+      IP  R +
Sbjct: 57  HGLSSEFLSDKPLFAAVAEDFLTFIGDAPLIIHNASFDIGFINMELERVKRAAIPRERLV 116

Query: 95  CTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIA 131
            TL+LAR      +  L  +     + + +  +   L+ 
Sbjct: 117 DTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLD 155


>gi|258646762|ref|ZP_05734231.1| exonuclease [Dialister invisus DSM 15470]
 gi|260404188|gb|EEW97735.1| exonuclease [Dialister invisus DSM 15470]
          Length = 207

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 45/144 (31%), Gaps = 29/144 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGIC------------------KYAEDVCVILFAFGFDDHPV 42
           M    IDFET      + C +                    Y  +          +   +
Sbjct: 1   MKYAAIDFETAYWGPGSACSLGISVSDGNEITEEWYRLIRPYRMNFD--PICMRVNG--I 56

Query: 43  ELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNL-DIPIHR--WICTLV 98
              D   +P  P   KE  E      + AHN+ F+  VL +  ++ D+P     +  T+ 
Sbjct: 57  YPDDVEKEPAFPAFWKEVAERLEGSIVFAHNARFDMGVLASVLDVYDLPDIHFLYGDTVA 116

Query: 99  LARSN---GLPSALKAVGEALKLS 119
           ++R          L  V  +L   
Sbjct: 117 VSRMLWKELPNHKLDTVAGSLGYD 140


>gi|66357594|ref|XP_625975.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
           domain and an HRDc domain [Cryptosporidium parvum Iowa
           II]
 gi|46227246|gb|EAK88196.1| RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD
           domain and an HRDc domain [Cryptosporidium parvum Iowa
           II]
          Length = 957

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 48/177 (27%), Gaps = 31/177 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E              Y     V L       H   + D  +     Q+L E   N
Sbjct: 304 LAIDVE--------HHSNQSY--KGFVSLIQLSTRTHD-YIIDPFNLFNEIQMLNELTAN 352

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  V H S ++   L+   +  + I     T   AR    P                 
Sbjct: 353 PKILKVLHGSDYDIIWLQR--DFSVYIVNMFDTGQAARILNTPGG--------------- 395

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLS 179
              K L++ +C          +              EY +GD      I+  ++ L 
Sbjct: 396 YSLKNLLSIYC--SLDIDKRFQLADWRERPLSNELIEYARGDTHYLLYIYDIMKNLL 450


>gi|85375259|ref|YP_459321.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594]
 gi|84788342|gb|ABC64524.1| ribonuclease D 3'-5' exonuclease [Erythrobacter litoralis HTCC2594]
          Length = 206

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 36/210 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALE 62
           L +D ET          +        + +           L     D       LK  L 
Sbjct: 21  LAVDTET----------MGLVTRRDRLCIVQISDGGEDEHLVRFAPDSDYAAPNLKALLA 70

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           +T+   + H + F+   ++    +        CT + ++          LK + E L   
Sbjct: 71  DTNRVKLYHFARFDLAAIEHYLGVTAAP--VFCTKIASKLTRTYTDRHGLKNLVEEL--- 125

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +        +    +       +Y   DV     + + L    
Sbjct: 126 ---------LGENLSKQQQSSDWGGADINEAQ------RDYAASDVRYLHRMREILITRL 170

Query: 180 SK--EQELWYLDQTINDRGYCVDVALAHTL 207
            +    E+             +D+A     
Sbjct: 171 EREGRTEMAQACFDFLPTRARLDLAGWEEH 200


>gi|17136648|ref|NP_476821.1| tamas [Drosophila melanogaster]
 gi|27923967|sp|Q27607|DPOG1_DROME RecName: Full=DNA polymerase subunit gamma-1, mitochondrial; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit;
            Short=Protein tamas; Flags: Precursor
 gi|7298099|gb|AAF53338.1| tamas [Drosophila melanogaster]
 gi|201065799|gb|ACH92309.1| FI06005p [Drosophila melanogaster]
          Length = 1145

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 80/308 (25%), Gaps = 38/308 (12%)

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVT 411
               +   +RS V A  G +LV AD+   E  + +     +  GE               +
Sbjct: 785  PDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKS 844

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +   ++  A+     R   KV+  A  Y  G    + +        +      K    
Sbjct: 845  NGSDMHSI-TAKAVGISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEAKAKAMKM 903

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                +    +                      + ++      +        E  +   Q 
Sbjct: 904  FSITKGKRVY---------------RLREEFHDELEDRAYSSY--------EASRLAIQR 940

Query: 532  IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  +   +                 +   S     +     +R+          +E 
Sbjct: 941  NRTLAEV-FHRPNWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALE--ADTGPEQEQ 997

Query: 592  TYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS--- 645
             +       +VQ+ + D   ++   M     +     L+ HDE+     +     A+   
Sbjct: 998  RFLPTRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAM 1057

Query: 646  MLYHLMTS 653
             + +LMT 
Sbjct: 1058 HITNLMTR 1065



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 62/219 (28%), Gaps = 28/219 (12%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA-----LKA----VGEALK 117
            +V HN  ++R  LK  +  +    R++ T+ L       ++     LK+      E L 
Sbjct: 254 LVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVSGVTSYQRAMLKSKKEPAAEDLG 313

Query: 118 LSSQ----KMEEGKELI--ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              Q     + E   L         E      +      R++++    YC  DV  T  I
Sbjct: 314 WLEQSSLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRI 373

Query: 172 FKRLEPLSSKEQELWYLDQ-TIND----------RGYCVDVALA--HTLNQIVDVERTKL 218
            + L PL ++           +                +  A      L+        + 
Sbjct: 374 LRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYIREAQLTYEDLSIEAKYHLGRR 433

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
            +E  SL              + W   E  L      + 
Sbjct: 434 AEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKP 472


>gi|329929867|ref|ZP_08283543.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
 gi|328935845|gb|EGG32306.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
           HGF5]
          Length = 971

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 26/145 (17%)

Query: 1   MATLFIDFETR---SPIDLTKCGICKYAEDVCV-ILFAFGFDDH--------------PV 42
           M    +DFET    S  ++ + G+    ED  +  ++    +                  
Sbjct: 14  MKFAVLDFETTGNQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLTGISDS 73

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
           ++ D      M   L   L++  V +V HN  F+   L+             R + T+  
Sbjct: 74  DVADAPSLEEMMMELVPMLDD--VVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTMHF 131

Query: 100 ARSNG---LPSALKAVGEALKLSSQ 121
            +          L  V     L   
Sbjct: 132 LKICFPSLPSYQLGMVSSHFGLEHD 156


>gi|301301275|ref|ZP_07207430.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851151|gb|EFK78880.1| exonuclease [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 177

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVIL---FAFGFDDHPVELWDCVHD 50
           M  + IDFET      S   L    +   + A+    ++     F + +  V        
Sbjct: 1   MNFVAIDFETANPKRYSACSLALTVVKNNQIADQFYSLIKPDTDFSWRNIQVHGITEKQV 60

Query: 51  PVMPQ--VLKEALEN---TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
              P    L   ++N    +  IVAHN+ F+ +VL      +++ +P ++ + TL  ++ 
Sbjct: 61  QNAPSFPELWPHIQNFFTPNNLIVAHNASFDSSVLLRTLEHYDITLPHYQLLDTLRTSKK 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  +   L + 
Sbjct: 121 FFKDLENHKLDTICNNLNID 140


>gi|260753374|ref|YP_003226267.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552737|gb|ACV75683.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 234

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 51/181 (28%), Gaps = 31/181 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELW-DCVHDPVMPQVL- 57
           M  +  D ET     +      +  E  CV L       +     +        + + + 
Sbjct: 1   MREIVFDTETTGLSPING---DRLVEIGCVELINKVETGNSFHCYFNPQRPMDAVAESIH 57

Query: 58  ---------KEALENTDV---------TIVAHNSYFERTVLKACFNL----DIPIHRWIC 95
                    K    +             +VAHN+ F+   L    +      I + R + 
Sbjct: 58  GLSDAFLADKPLFADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117

Query: 96  TLVLARSNGLP--SALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           TL +AR         L A+     +  S +++ G  L A        E    R      +
Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELTGGRQIGMALD 177

Query: 153 A 153
            
Sbjct: 178 D 178


>gi|90962124|ref|YP_536040.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius UCC118]
 gi|227891147|ref|ZP_04008952.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius ATCC 11741]
 gi|90821318|gb|ABD99957.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius UCC118]
 gi|227867021|gb|EEJ74442.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius ATCC 11741]
          Length = 177

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVIL---FAFGFDDHPVELWDCVHD 50
           M  + IDFET      S   L    +   + A+    ++     F + +  V        
Sbjct: 1   MNFVAIDFETANPKRYSACSLALTVVKNNQIADQFYSLIKPDTDFSWRNIQVHGITEKQV 60

Query: 51  PVMPQ--VLKEALEN---TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
              P    L   ++N    +  IVAHN+ F+ +VL      +++ +P ++ + TL  ++ 
Sbjct: 61  QNAPSFPELWPHIQNFFTPNNLIVAHNASFDSSVLLRTLEHYDITLPHYQLLDTLRTSKK 120

Query: 103 N---GLPSALKAVGEALKLS 119
                    L  +   L + 
Sbjct: 121 FFKDFENHKLDTICNNLNID 140


>gi|53803525|ref|YP_114794.1| ribonuclease D [Methylococcus capsulatus str. Bath]
 gi|53757286|gb|AAU91577.1| ribonuclease D [Methylococcus capsulatus str. Bath]
          Length = 388

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 71/281 (25%), Gaps = 60/281 (21%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                     L           +          + L+
Sbjct: 31  IAVDTEFMRDKTYY---------------PKFCLLQIANGTQAACIDPLA-----IEDLR 70

Query: 59  E---ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-----SALK 110
           E    L N  +T V H +  +  +    F           T + A   G P     ++L 
Sbjct: 71  EVECLLFNRAITKVFHAARQDLEIFFHRF--RAVPAPIFDTQLAAPLVGHPEQVGYASL- 127

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            V   L ++  K     +   R                          EY   DV     
Sbjct: 128 -VSAMLGVTVDKEHTRTDWSQRPLS-------------------AAQKEYAANDVIHLAA 167

Query: 171 IFKRLEPLSSKEQELWYLDQTI---NDRGYCVDV-ALAHTLNQIVDVERTKLDQELESLT 226
           ++ R+     +     +L        +    V+    A      +D  + +       L 
Sbjct: 168 LYPRMREQLERLGRYAWLVDEFAALEEPDLYVNRPEDAWQRIGGLDRLKPEQFALAVRLA 227

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
               ++++  +  + W+  +  L    L     +  L + +
Sbjct: 228 AWRENTAQQNDLPRNWILRDEALLEIALRRPRNRDALQALR 268


>gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7]
 gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7]
          Length = 224

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 35/153 (22%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCVI----LFAFGFDDHPVELW--------- 45
            +  D ET         + + G  K  ++  V+                           
Sbjct: 41  YVVFDLETTGFNKKEDRIIEIGAIK-VKNGRVVDRFSTLCAPIKGGKPMYISAKITEVTG 99

Query: 46  ----DCVHDPVMPQVLKEALEN--TDVTIVAHN-SYFERTVLK---ACFNLDIPIHRWIC 95
               D ++     + +K  +         VAHN   F+   LK      N++      + 
Sbjct: 100 IKNVDLLNQIPESEAVKNFMCWLGESKISVAHNGLKFDIPFLKEACKRSNVEFKFTHILD 159

Query: 96  TLVLARSNG-------LPSALKAVGEALKLSSQ 121
           T++L+++           +  + +     +  Q
Sbjct: 160 TMLLSKALNYVNNGNIPNNKQETLARYFGVDYQ 192


>gi|194290095|ref|YP_002006002.1| DNA polymerase III subunit epsilon [Cupriavidus taiwanensis LMG
           19424]
 gi|193223930|emb|CAQ69939.1| DNA polymerase III epsilon subunit [Cupriavidus taiwanensis LMG
           19424]
          Length = 246

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 63/213 (29%), Gaps = 34/213 (15%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y   +  +   A       
Sbjct: 4   MRQIVLDTETTGLNAATGDRLIEIGCVELMNRRLTGRHLHFYVNPERDIDEGAIAVHGIT 63

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI---PIHRWI 94
           VE   D      +   ++E +++ ++ I  HN+ F+   L        L      +   I
Sbjct: 64  VEFLADKPRFAEVVHDIREFVQDAELII--HNAQFDLGFLDMEFQLLGLPPFRQHVGNVI 121

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL  AR        +L A+ E L +S+   +    L+      E +  +          
Sbjct: 122 DTLREARQMFPGKRNSLDALCERLGISNAHRKLHGALLDAELLAEVYLAMTRGQ---DSL 178

Query: 153 AWRLFGEYCKGD-VTVTREIFKRLEPLSSKEQE 184
                      D V  T ++ +   P+     E
Sbjct: 179 VIDTLDGGSGQDGVVTTADLSRLTLPVLRATDE 211


>gi|15602571|ref|NP_245643.1| ribonuclease D [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720994|gb|AAK02790.1| Rnd [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 383

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 77/293 (26%), Gaps = 42/293 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E    + +             + L    +D   V L D              L 
Sbjct: 35  VIALDTE---FVRIKTL-------YPQLGLIQL-YDGERVSLIDPTTIQDF-SPFIALLA 82

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           NT V  V H    +  V +  FN        + T ++A   G P++             +
Sbjct: 83  NTAVLKVLHACSEDLEVFQHSFNQL--PTPMLDTQIMANFLGFPNSTGLATLVQHYFQLE 140

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           +++G        +  +                     Y   DV     +++R++   ++ 
Sbjct: 141 IDKGASRTDWLARPLSDNQ----------------LIYAAADVWYLLPLYQRMQEALAQT 184

Query: 183 QELWYLDQTIN----DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
           +      Q        R    D  LA+                L+ L       +   + 
Sbjct: 185 RWQEAAQQDCEALLLKREQHKDPELAYLGIPNAWRLTPSELMRLKLLAKWRQEEATKRDL 244

Query: 239 LKTWL--FLETGLHLEDLTETTCQRVLSSNKKLTPQA----IQVFNNRMRASR 285
              ++          +   + T +  L +      +      ++ +   +  R
Sbjct: 245 ALNFVVRAEHLWQVAKHNPKHTSE--LLALGLSHHEVRIHGKKILHLIGQLKR 295


>gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I]
 gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822]
 gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50]
 gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis]
 gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I]
 gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50]
 gi|332381049|gb|AEE65896.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS]
          Length = 244

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 38/163 (23%)

Query: 1   MATLFIDFETRSPID-----LTKCG-------------ICKYAE-----DVCVILFAFGF 37
           M  +  D ET          + + G             +  Y       D      A   
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPDRDSDPE----ALAV 56

Query: 38  DDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF------NLDIPI 90
                E   D      + +     + + ++  +AHN+ F+     A         L+   
Sbjct: 57  HGLTTEFLADKPRFAEVAEQFLAFIADAEL--IAHNAAFDVKFFNAELQRIGRDPLNTHC 114

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              + +L+ ARS       +L A+ +   +S+        L+ 
Sbjct: 115 ENIVDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLD 157


>gi|99081529|ref|YP_613683.1| hypothetical protein TM1040_1688 [Ruegeria sp. TM1040]
 gi|99037809|gb|ABF64421.1| DNA polymerase [Ruegeria sp. TM1040]
          Length = 234

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 50/168 (29%), Gaps = 46/168 (27%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALEN--------TDVTIVAHNSY-FERTVLKA- 82
            A+  +D PV +    H        +  L +           T+V HN   F+   L+  
Sbjct: 83  IAWARNDGPVAV---RHAKTTADE-RSILADFFGDLDPYHSETLVGHNIAGFDIGFLRKR 138

Query: 83  --CFNLDIP--------IHRWI----CTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGK 127
                + +P           W      T+  A + G    ++  + + L +         
Sbjct: 139 AIYLGVKMPASCSFPRDPKPWDRSIVDTM-AAWAGGTNRISMDELCQILGI--------- 188

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                  +G+                     EYCK DV  TREI KR 
Sbjct: 189 -------QGKDGFDGSQVAAAWAAGEHDKIAEYCKDDVWRTREIHKRF 229


>gi|321465482|gb|EFX76483.1| hypothetical protein DAPPUDRAFT_226045 [Daphnia pulex]
          Length = 544

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 22/174 (12%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69
           T   +DL       Y       L     D     + D +      Q L +   + ++  +
Sbjct: 117 TVIGVDLEHHSDRSYR--GITCLMQISTDKTD-YIIDTLQLWDHLQPLNKVFCDPNIVKI 173

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
              +  +   L+  F + +       TL  A   G                QK      L
Sbjct: 174 FQGADSDVIWLQRDFGIYV--VNLFDTLQAASLLGF---------------QKKGLYF-L 215

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           +  +C+   ++     +        +   +Y + D      I++R++       
Sbjct: 216 LQHYCQVHVNKKYQLADWRIRPLP-QEMVKYAREDTHYLIYIYERMKQDLYSRH 268


>gi|148251776|ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. BTAi1]
 gi|146403949|gb|ABQ32455.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. BTAi1]
          Length = 232

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 41/179 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKY--------AEDVCVILFA 34
           M  + +D ET     L    +                   +Y        AE   V   +
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPERDMPAEAFAVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPI 90
             F           H   + +   E + +    +V HN+ F+       L       IP 
Sbjct: 61  SEFLADK----PLFH--EIVEEFLEFIGDA--PLVIHNASFDIGFINAELDRVKRAAIPR 112

Query: 91  HRWICTLVLARSNGLPSA--LKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
            R + TL+LAR      +  L  +     + + ++ + G  L A        + +  R 
Sbjct: 113 ERLVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQ 171


>gi|326405243|ref|YP_004285325.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
 gi|325052105|dbj|BAJ82443.1| DNA polymerase III epsilon subunit [Acidiphilium multivorum AIU301]
          Length = 235

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 53/192 (27%), Gaps = 47/192 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD---HPVELWDCVHDPVMP-------- 54
            D ET     L   G  +  E   + L    ++D     V       +  +P        
Sbjct: 7   FDTETTGLEPL---GGDRVIEVAAIEL----WNDLPTGKVFHTLIDPERDIPAEASRVHG 59

Query: 55  ----------------QVLKEAL-ENTDVTIVAHNSYFERTVL----KACFNLDIPIHRW 93
                             L E   E+    +VAHN+ F+   L           +   R 
Sbjct: 60  MTSADVAGKPKFAEIAAELLEFFAEDP---LVAHNAPFDFGFLDAEFARIGRAALDRARM 116

Query: 94  ICTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKP 148
           I TL LA  R  G+P++L A+     +          L+                 R   
Sbjct: 117 IDTLALAKQRFPGMPNSLDALCRRFDIDLSARTTHNALLDCKLLAEVYVELTGGRQRGLD 176

Query: 149 NHREAWRLFGEY 160
              E+     EY
Sbjct: 177 LAAESTIRLVEY 188


>gi|144899165|emb|CAM76029.1| Ribonuclease D [Magnetospirillum gryphiswaldense MSR-1]
          Length = 406

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 69/292 (23%), Gaps = 58/292 (19%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L             D +   +    L
Sbjct: 29  YITVDTEFMREKTYY---------------PQLCLVQLA-GPDEARAVDPLAPGMDLAPL 72

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            E + N +V  V H +  +  +                T V A   G   +       + 
Sbjct: 73  FELMANPNVLKVFHAARQDVEIFLHLSGAV--PAPLFDTQVAAMVCGFGDS-------VG 123

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +   +  K  I    K +       R     +       +Y   DVT  R  +++L  
Sbjct: 124 YETLASQLAKARID---KSQRFTDWALRPLTEKQV------QYALADVTHLRVAYEKLVR 174

Query: 178 LSSKE-QELWYLDQTIND---RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              +  +  W +D+         Y  D   A    +       K    L+ L       +
Sbjct: 175 KLERNGRLDWLVDEMAELASPDTYRTDPENAWKRLKP-RSSSPKFLAVLKELAAWREREA 233

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           +  +  +  +  +                L       P  +          +
Sbjct: 234 QERDIPRQRMLRD--------------ETLMEIAAHHPANVDELARTRGMGK 271


>gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str.
           Wilmington]
 gi|81826284|sp|Q68W16|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon
 gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 229

 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 51/184 (27%), Gaps = 36/184 (19%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYAEDVCVILF-AFGFDDHPV 42
             + +D ET                       LT      Y      + F A+       
Sbjct: 5   REIILDTETTGLDPQQGHRIIEIGAIEMVNKVLTGKHFHCYINPERDMPFEAYKIHGISG 64

Query: 43  ELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFNLDIPIHR 92
           E        H   +     + + ++  T++ HN+ F+          LK      + +  
Sbjct: 65  EFLKDKPLFH--TIANDFLKFIADS--TLIIHNAPFDIKFLNHELSLLKRTEIKFLELTN 120

Query: 93  WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPN 149
            I TLV+ARS       +L A+ +  K+ +   +    L       E        R    
Sbjct: 121 TIDTLVMARSMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALTGGRQSTF 180

Query: 150 HREA 153
               
Sbjct: 181 KMID 184


>gi|319898087|ref|YP_004136284.1| ribonuclease d [Haemophilus influenzae F3031]
 gi|317433593|emb|CBY81977.1| ribonuclease D [Haemophilus influenzae F3031]
          Length = 380

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 97/332 (29%), Gaps = 65/332 (19%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLK 58
           M + + +D E           +  Y     + L    +D   V L D        P    
Sbjct: 29  MKSAVALDTE--------FMRVSTYF--PKLGLIQL-YDGERVSLIDPLAITDFSP--FV 75

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-EA 115
             L N  V  + H+   +  V    F  D      I T ++AR  GL   + L  +  + 
Sbjct: 76  ALLSNPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQY 133

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +   K       I R                       +  +Y  GDV     ++  L
Sbjct: 134 LNIEIDKGATRTNWIKRPLS-------------------DIQLQYAAGDVWYLLPLYHIL 174

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           E   +K      +            +A  H L +    +          L    +S  R 
Sbjct: 175 EKELAKTPWEQAVRDDCELV-----LAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRV 229

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA------------------IQVF 277
           L + +  + +E  L L  + ++     L    K  P+                    ++ 
Sbjct: 230 LGQWRQNVAIERDLALSYIVKS---EHLWKVAKNNPRNTSEMLEMGLTENEVRVRGKKIL 286

Query: 278 NNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
               +A R +       +E ++ D R + T++
Sbjct: 287 QLLSQARRISSNDYPKSIERISEDPRYKKTIR 318


>gi|226533369|ref|NP_001143931.1| hypothetical protein LOC100276743 [Zea mays]
 gi|194696098|gb|ACF82133.1| unknown [Zea mays]
 gi|195629726|gb|ACG36504.1| hypothetical protein [Zea mays]
          Length = 344

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 58/207 (28%), Gaps = 28/207 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL          +  + +    F D  V L D       + Q  K AL
Sbjct: 57  VIGFDCE---GVDL--------CRNGALCIMQLAFPDA-VYLVDAIEGGKELIQACKPAL 104

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+  +T V H+   +   L   F   I +H  + T + A S       +  G+       
Sbjct: 105 ESDHITKVIHDCKRDSEAL--YFQFGIKLHNVMDTQI-AYSLIQEQ--EQKGKKKTSDDY 159

Query: 122 KMEEGKELI---ARFCKGETHECLYDRNKPNHREAW------RLFGEYCKGDVTVTREIF 172
                  L+            +             W       +       DV     I+
Sbjct: 160 NYISFVSLLADKRYCGIPYPEKEEVRILLRQDPNFWTIRPLSDMMVRAATDDVRFLLNIY 219

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCV 199
           +++    +K   LW L         C 
Sbjct: 220 EKMMEKLNKV-SLWRLAVRSELYCRCF 245


>gi|227821514|ref|YP_002825484.1| ribonuclease D [Sinorhizobium fredii NGR234]
 gi|227340513|gb|ACP24731.1| ribonuclease D [Sinorhizobium fredii NGR234]
          Length = 383

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 53/186 (28%), Gaps = 29/186 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E           + +      + L           + D +   +        + 
Sbjct: 20  YITIDTE----------FLRETTFWPELCLIQMA-GPDTAVIVDPMAPGIDLAPFFALMA 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N DV  V H +  +  ++      ++  H    T V A   G      +V     +S  K
Sbjct: 69  NADVVKVFHAARQDIEII-HHLG-NLIPHPLFDTQVAAMVCGFG---DSVSYDQLVSRIK 123

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
             +         K         R   + +        Y   DVT  R+++  L+    +E
Sbjct: 124 NVQI-------DKSSRFTDWSRRPLTDKQLD------YALADVTHLRDVYHYLKAELERE 170

Query: 183 QELWYL 188
               +L
Sbjct: 171 GRSSWL 176


>gi|220933694|ref|YP_002512593.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995004|gb|ACL71606.1| ribonuclease D [Thioalkalivibrio sp. HL-EbGR7]
          Length = 396

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 71/302 (23%), Gaps = 49/302 (16%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L      D    +       + P  L 
Sbjct: 36  IALDTEFVREKTYY---------------PRLCLVQVATPDALACIDPIALPDLGP--LA 78

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  VT V H ++ +  +L               T V     G              
Sbjct: 79  ALLHDPAVTKVVHAAHQDMEILLQSTGRV--PTPVFDTQVAVSLLG-------------- 122

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF-GEYCKGDVTVTREIFKRLEP 177
                + G   + +       +  + R     +         Y   DV     ++  +  
Sbjct: 123 --HGDQIGYARMVQIYLDLELDKGHTRT-DWSQRPLETAQLRYAADDVRHLARVYPMILK 179

Query: 178 LSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
              +    +           +  Y  D   A    +     +      L++L       +
Sbjct: 180 DLEEKGRLDWLSEDFAAISEESRYLPDPDNAWRRIKGQKYLKGAQLAVLQALAAWRERQA 239

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
              +  K W+  +  L        T    L+S  K+     +          + V +  +
Sbjct: 240 MEKDLPKRWILSDDVLTELSQRSPTD---LASLAKVRGLEDKTLQRHGETLLALVREARS 296

Query: 294 LV 295
           L 
Sbjct: 297 LP 298


>gi|73667317|ref|YP_303333.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
 gi|72394458|gb|AAZ68735.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
          Length = 386

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 72/291 (24%), Gaps = 49/291 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E        +     Y     + L    +      + D +   +    L   L
Sbjct: 22  KFIAIDTE------FIRNSSEYY---PRLCLMQVAY-GREQFVIDVLASDMDLSPLNSIL 71

Query: 62  ENTDVTIVAHNSYFER-TVLKACFNLDIPIHRWICTLVLA-----RSNGLPSALKAVGEA 115
            N ++  V H+   +   +L     +    +    T V A       N +  +   V + 
Sbjct: 72  YNKNIVKVFHDCRQDIDALLTKFPKI---PNPIFDTQVAAMFCYCYENAVGYSR-LVEQF 127

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +S  K+                     R     +       +Y   DV    E+++ L
Sbjct: 128 LGISLDKLSL------------KRSNWMLRPLSPDKI------QYALNDVIYLHELYQIL 169

Query: 176 EPLSS------KEQELWYLDQTINDRGYCV-DVALAHTLNQIVDVERTKLDQELESLTY- 227
                         E              V D+      + I   E   +   +E     
Sbjct: 170 YDNLVDSGKLLWFLEEMDNIVLQELNYSNVCDIPDLS--SDITREEIIVVKSVIEWREKL 227

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTE-TTCQRVLSSNKKLTPQAIQVF 277
               +      L+  + L         ++ +T  + +            + 
Sbjct: 228 AQFFNLNRELILRNKVMLSLIKDFIRKSDISTLSKYIKKEYLTHGIVADLL 278


>gi|291414300|ref|XP_002723398.1| PREDICTED: exosome component 10 [Oryctolagus cuniculus]
          Length = 886

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 48/187 (25%), Gaps = 35/187 (18%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEA 115
           L E+L N  +  V H +  +   L+  F   + +     T   AR   L   +L  + + 
Sbjct: 349 LNESLTNPTIVKVFHGADSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKL 406

Query: 116 L-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              + S K  +  +                R  P           Y + D      I+ R
Sbjct: 407 YCSVDSDKQYQLADW-------------RIRPLP------EEMLSYARDDTHYLLYIYDR 447

Query: 175 LEPLSSK------------EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +     +             Q    L      +    D +      +      T+     
Sbjct: 448 MRLELWERGNEQPTQLQVVWQRSRDLCLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAF 507

Query: 223 ESLTYGL 229
           + L    
Sbjct: 508 QLLFAWR 514


>gi|312115401|ref|YP_004012997.1| DNA polymerase III subunit epsilon [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220530|gb|ADP71898.1| DNA polymerase III, epsilon subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 241

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 45/157 (28%), Gaps = 27/157 (17%)

Query: 1   MATLFIDFETRSPID--------LTKCGICKYAEDVCVILFAF----GFDDHPVELWDCV 48
           M  L +D ET             L    +  Y        + F            +    
Sbjct: 1   MRELVLDTETTGLDPKSGHRIIELACVELHNYIPTGVFWHWYFNPERSVPREATAIHGLT 60

Query: 49  HDPVMPQVLKEALENTDVTIVA-------HNSYFERTVLK---ACFNL--DIPIHRWICT 96
              +  + L  A+   D+  V        HN+ F+   L            I + R   T
Sbjct: 61  DGFLADKPLFGAIA-PDIVKVLEGARLIIHNASFDVGFLNFEFQKLGYQQPISMERVTDT 119

Query: 97  LVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIA 131
           L LAR    G P+ L A+     + +    +   L+ 
Sbjct: 120 LALARRKHPGSPNNLDALCRRYGIDNSTRTKHGALLD 156


>gi|15668541|ref|NP_247339.1| hypothetical protein MJ_0365 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495934|sp|Q57811|Y365_METJA RecName: Full=Uncharacterized protein MJ0365
 gi|1499152|gb|AAB98356.1| hypothetical protein MJ_0365 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 176

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 25/194 (12%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           MA   ID ET     +             ++       D  + L D   +  +     + 
Sbjct: 1   MAKAIIDIETTGLNPMEH----------RIVAIGVKLGDRDIILMD-ESEYYLLVNFWDT 49

Query: 61  LENTDVTI-VAHNSYFERTVLK-ACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +E   +   +  N  F+   LK       + I  +                  + + L  
Sbjct: 50  VEKEGIEKIIGFNIDFDWQFLKLRSLYHRLKIKHFR----------KYQGRVDLRQILNG 99

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           S  +  +G +L+             D N     E W  F E    +    R+I + L+  
Sbjct: 100 SGGQYRKGTKLVDYCRFLGIDVPEDDANGSEIPELWEKFEEEGDEEAK--RKICEHLKRD 157

Query: 179 SSKEQELWYLDQTI 192
             +  EL+ +    
Sbjct: 158 LERTWELYKILVDC 171


>gi|319953164|ref|YP_004164431.1| 3'-5' exonuclease, polb [Cellulophaga algicola DSM 14237]
 gi|319421824|gb|ADV48933.1| 3'-5' exonuclease, PolB [Cellulophaga algicola DSM 14237]
          Length = 237

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 51/183 (27%), Gaps = 41/183 (22%)

Query: 21  ICKYAEDVCVILFAFGF----DDHPVELWDCVHDP--VMPQVLKEALEN----TDVTIVA 70
              +AE   +I  + G+     +         H     +    K  L++        +  
Sbjct: 56  AGIWAEFGKIICISVGYFKFSGESRTFRVTTFHGEEAQLLNEFKALLDSHFSQPKYLLCG 115

Query: 71  HNSY-FERTVLKACFNLDI------------PIHRWI--CTLVLARSNGLPS--ALKAVG 113
           HN+  F+   +     ++                      T+ L +        +LK + 
Sbjct: 116 HNAKEFDFPYIARRMLINTIDLPNKLNLFGRKPWEIEHLDTMELWKFGDYKHYSSLKLMA 175

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L + S K                 +    RN     +       YC+ DV  T ++F 
Sbjct: 176 NVLGIPSPK--------------GDIDGSMVRNVYYEDKDLDRIVTYCELDVVTTAQVFL 221

Query: 174 RLE 176
           RL 
Sbjct: 222 RLR 224


>gi|329850483|ref|ZP_08265328.1| ribonuclease D [Asticcacaulis biprosthecum C19]
 gi|328840798|gb|EGF90369.1| ribonuclease D [Asticcacaulis biprosthecum C19]
          Length = 417

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 58/200 (29%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L     +D    + D +   +  +   
Sbjct: 23  ITVDTEFMRETTYW---------------PKLCLIQAASED-HAAIIDPLAKSLDLKPFL 66

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L +  +  V H    +  +     NL         T V A + G       V      
Sbjct: 67  DILADEKILKVFHACRQDMEIF---VNLGTMPMPIFDTQVAAMAAGYG---DQVA----- 115

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     L+ +  K +  +     +      + +   +Y  GDVT   +++ +L   
Sbjct: 116 -------YDSLVRQKLKIDIDKGSRFTDWSRRPLSDQQL-QYALGDVTHLAKLYPKLRDR 167

Query: 179 SSKEQELWYLDQTINDRGYC 198
            ++E  L ++   + D    
Sbjct: 168 LAREGRLEWVSAEMVDLCAP 187


>gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera sp. 301]
 gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera sp. 301]
          Length = 235

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 42/165 (25%)

Query: 1   MATLFIDFETRSPI------------------DLTKCGICKYAEDV--------CVILFA 34
           M  +F+D ET                       LTK     Y             V   +
Sbjct: 1   MRQIFLDTETTGLYHAQGHRVIEVAAVEVINRRLTKQHFHYYLNPDREIDQGAQEVHGIS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--- 90
             F        D  +       L   + ++++  + HN+ F+   L   F  ++      
Sbjct: 61  LEFLQDKPHFADIAN------ELIAFIADSEL--IMHNAPFDVGFLNREFGLIEQKPVEA 112

Query: 91  --HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              +   TL +A+        +L A+ +   + + K      L+ 
Sbjct: 113 ITAKITDTLKIAKEMRPGQRNSLDALCKHYGIDNSKRTLHGALLD 157


>gi|262212351|gb|ACY35792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 65/275 (23%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASPGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|118467912|ref|YP_887109.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
 gi|118169199|gb|ABK70095.1| ribonuclease D [Mycobacterium smegmatis str. MC2 155]
          Length = 415

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 70/269 (26%), Gaps = 41/269 (15%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA---L 61
            ID E        +    +Y+    ++            +    H       L+     L
Sbjct: 51  AIDAE--------RASGFRYSNRAYLVQIRRA-GAGTALIDPVNHGGSPIDTLEPVAQTL 101

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
            + +   V H +  +   L     + +   +   T +  R  G     L A+ + L    
Sbjct: 102 ADDE--WVLHAADQDLPCLAE---IGLRPGKLYDTELAGRLAGFERVNLAAMVQRL---- 152

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                         +        D +K    + W     Y   DV V  E+   +  +  
Sbjct: 153 -----------LGLQLMKGHGAADWSKRPLPDEW---LNYAALDVEVLLELRHAIAAVLE 198

Query: 181 KEQELWYLDQTINDRGYCVD----VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           ++ +  +  Q        V            + I  V   +    +  L     + +R  
Sbjct: 199 EQGKTEWAAQEFEHLRTYVAQPTRRDRWRRTSGIHKVRNPRALAAVRELWTTRDNIARSR 258

Query: 237 EKL-KTWLFLETGLHLEDLTETTCQRVLS 264
           +      L     ++   +   T   + +
Sbjct: 259 DIAPGRILPDAAIINAATVDPKTTAELTA 287


>gi|90580077|ref|ZP_01235885.1| hypothetical ribonuclease D [Vibrio angustum S14]
 gi|90438962|gb|EAS64145.1| hypothetical ribonuclease D [Vibrio angustum S14]
          Length = 375

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 76/254 (29%), Gaps = 28/254 (11%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D +    M + L   L +  V  V H    +  V +              T
Sbjct: 47  FDGEQLSLIDPLEVEDM-EPLWALLRDQSVIKVLHACGEDLEVFQHHAG--CLPTPMFDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA-RFCKGETHECLYDRNKPNHREAWR 155
            ++A   G             +S+      KE +     KGE       R     +    
Sbjct: 104 QLMAAFLG-----------HGISTGFGTLVKEYVGVELDKGEARTNWLARPLTEKQLD-- 150

Query: 156 LFGEYCKGDVTVTREIFK----RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
               Y   DV   + +F+    ++E     E      +  ++ R   VD   A+   +  
Sbjct: 151 ----YAAADVYYLKPLFESLLAKVEERGYMEALQQECESVMHRRIKPVDPEKAYLDIKNA 206

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
                +    L+ +    V  ++  +    ++  E  L           +  +  +K   
Sbjct: 207 WQLNPQQLAVLQKVAAWRVREAQKRDIALNFIVKELHLW---KLARFNIKSRAGLEKEDF 263

Query: 272 QAIQVFNNRMRASR 285
           + +++  +  R  +
Sbjct: 264 EPMEIQRHGNRLLK 277


>gi|85707524|ref|ZP_01038599.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius sp. 217]
 gi|85667957|gb|EAQ22843.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Roseovarius sp. 217]
          Length = 231

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 29/177 (16%)

Query: 1   MATLFIDFETR-----SPIDLTKCG-ICKYAEDVCVILF-------------AFGFDD-H 40
           M  + +D ET      S   + + G +  Y        F             AF      
Sbjct: 1   MREIVLDTETTGFEPESGDRIVEIGAVELYNHMPTGRTFHKYINPQRAMPEAAFAVHGLG 60

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRWICT 96
              L +      + Q   + + +  +  V HN+ F+   L A         +P  + I T
Sbjct: 61  DDFLRNKPLFAEIAQEFLDFVLDAKL--VIHNAAFDMKFLNAELGWLKLPHLPWEQAIDT 118

Query: 97  LVLAR--SNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNH 150
           L +AR    G P++L A+    ++ +  +   G  L +        E +  R     
Sbjct: 119 LAIARQKFPGSPASLDALCRRFQIDNSARTLHGALLDSEILAEVYLELIGGRQPDFA 175


>gi|115525280|ref|YP_782191.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
 gi|115519227|gb|ABJ07211.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
          Length = 392

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 41/168 (24%), Gaps = 23/168 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E      L +           V+  A         + D +   +  +   E + 
Sbjct: 22  VITVDTE-----FLRETTYYPLLC---VVQIASA---DEAVVIDSLAPGIDLKPFFELMA 70

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVGEAL-KLS 119
           +  V  V H +  +  ++     +    H    T V A   G   +     + E +    
Sbjct: 71  DEHVLKVFHAARQDIEIVWHRAGIL--PHPIFDTQVAAMVLGYGDSIAYDQLVERITGHR 128

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
             K     +   R    E                      +   D  +
Sbjct: 129 PDKTHRFTDWSRRPLTEEQVHYAVSDVTHLRDV-------FAALDADL 169


>gi|88607542|ref|YP_504762.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
 gi|88598605|gb|ABD44075.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
          Length = 381

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 31/221 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E        +     Y     + L    +++    + D + + +    L+E  +N
Sbjct: 24  VAIDTE------FLRSFNDYY---PKLCLLQIAYENKQ-CVIDALAEGIDLTPLQEIFDN 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           T +  V H+   +   L      +        T + A                 +   K+
Sbjct: 74  TQIFKVFHDCRQDLDALS--LLFESLPRPIFDTQIAAMLCEYHEN--------SVGYSKL 123

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
            E    +              R              Y   DV    +++  L  + + + 
Sbjct: 124 VEQFLGVKLNKMPFKRVDWSKRPLTESEV------RYALDDVIYLYKLYGILRDILTSKG 177

Query: 184 ELWYLDQTINDRGYCVD--VALAHTLNQIVDVERTKLDQEL 222
               L   + +    VD       T+ + ++      +QE 
Sbjct: 178 R---LSWYMEEMDCIVDSVSDNYTTILESMECYADLTEQEA 215


>gi|119478758|ref|XP_001259434.1| DNA polymerase gamma [Neosartorya fischeri NRRL 181]
 gi|119407588|gb|EAW17537.1| DNA polymerase gamma [Neosartorya fischeri NRRL 181]
          Length = 1109

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 86/343 (25%), Gaps = 65/343 (18%)

Query: 309 QFLGASRTGRWSGCV--FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
           Q   +  TG  S  +    PQ +P  + +   ++        +  +       +   +++
Sbjct: 625 QVKQSGSTGEKSNRLGFILPQIIPMGTITRRAVENTWLTASNAKAN------RVGSELKA 678

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
            + A  G   V AD+   E   +A + G+                  +++        T 
Sbjct: 679 MIKAPPGYVFVGADVDSQEL-WIASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTA 737

Query: 427 D----QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R   KV      Y  G K    +      +++             E +      
Sbjct: 738 HILGISRNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSEKETQEVATKLYRETKGTRTTR 797

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
           R + EN       + F+    E      R +   +                      A  
Sbjct: 798 RILSENPFWRGGTESFVFNKLEEFADQERPRTPAL----------------GAGITEALM 841

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
           RR +        + N  +       L    +        +    + R             
Sbjct: 842 RRFINKGSFMTSRINWAIQSSGVDYLHLLII--------SMDYLIRRFNI---------- 883

Query: 603 QAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                                + +TVHDEI     + D++ A+
Sbjct: 884 ------------------DARLAITVHDEIRYLVKEEDKYRAA 908


>gi|332187924|ref|ZP_08389657.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17]
 gi|332012085|gb|EGI54157.1| 3'-5' exonuclease family protein [Sphingomonas sp. S17]
          Length = 206

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 51/202 (25%), Gaps = 28/202 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALE 62
           + +D ET          +        + +           L     D       L+  L 
Sbjct: 21  IAVDTET----------MGLITPRDRLCVVQLSDGGPDEHLVRFSPDSDYAAPNLRALLA 70

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +     + H   F+   ++    +        CT + +R            +   L    
Sbjct: 71  DPARLKLYHFGRFDIAAIRHYLGVVAAP--VYCTKIASRLIR------TYTDRHGL---- 118

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               KEL+      E  +     +     E      EY   DV     +   L+    +E
Sbjct: 119 ----KELVRELLGIELSKAQQSSDWG-APELSDAQREYAASDVRYLHRMKVELDKRLERE 173

Query: 183 QELWYLDQTINDRGYCVDVALA 204
             +       +      ++ LA
Sbjct: 174 GRMELAQACFDFLPARAELDLA 195


>gi|296284765|ref|ZP_06862763.1| ribonuclease D [Citromicrobium bathyomarinum JL354]
          Length = 391

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 20/167 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL-ENTDVTIVAHNSYFERTVLKACFNL 86
             + L   G D+H     D + D +  + L + L EN DV  + H    +  +       
Sbjct: 40  PELCLVQIG-DEHEAAAIDPLADGIDLKPLLDLLTENEDVLKIFHAGSQDVEIFYNLTGK 98

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
               H    T +          + A+ ++ ++    + E   L     KG        R 
Sbjct: 99  T--PHPIFDTQIA---------MMAISQSEQIGYANLVE-HWLDKTIDKGARFTDWSRRP 146

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                       EY  GDVT   +IF R+     K     +L+  + 
Sbjct: 147 LT------DRQLEYAIGDVTYLAKIFPRILKKLMKTDRGMWLNAEME 187


>gi|241761459|ref|ZP_04759547.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374366|gb|EER63863.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 234

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 51/181 (28%), Gaps = 31/181 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELW-DCVHDPVMPQVL- 57
           M  +  D ET     +      +  E  CV L       +     +        + + + 
Sbjct: 1   MREIVFDTETTGLSPING---DRLVEIGCVELINKVETGNSFHCYFNPERPMDAVAESIH 57

Query: 58  ---------KEALENTDV---------TIVAHNSYFERTVLKACFNL----DIPIHRWIC 95
                    K    +             +VAHN+ F+   L    +      I + R + 
Sbjct: 58  GLSDAFLADKPLFADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117

Query: 96  TLVLARSNGLP--SALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           TL +AR         L A+     +  S +++ G  L A        E    R      +
Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELTGGRQIGMALD 177

Query: 153 A 153
            
Sbjct: 178 D 178


>gi|56550935|ref|YP_161774.1| DNA polymerase III subunit epsilon [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56542509|gb|AAV88663.1| DNA polymerase III, epsilon subunit [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 234

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 51/181 (28%), Gaps = 31/181 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELW-DCVHDPVMPQVL- 57
           M  +  D ET     +      +  E  CV L       +     +        + + + 
Sbjct: 1   MREIVFDTETTGLSPING---DRLVEIGCVELINKVETGNSFHCYFNPERPMDAVAESIH 57

Query: 58  ---------KEALENTDV---------TIVAHNSYFERTVLKACFNL----DIPIHRWIC 95
                    K    +             +VAHN+ F+   L    +      I + R + 
Sbjct: 58  GLSDAFLADKPLFADKAQELLSFIKLSPLVAHNAAFDFGFLNYELDKCGLPTICMTRMVD 117

Query: 96  TLVLARSNGLP--SALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           TL +AR         L A+     +  S +++ G  L A        E    R      +
Sbjct: 118 TLAIARGKHPGAKHTLDALCTRYGIDRSHRVKHGALLDAELLAQLYVELTGGRQIGMALD 177

Query: 153 A 153
            
Sbjct: 178 D 178


>gi|68073827|ref|XP_678828.1| 3'-5' exonuclease [Plasmodium berghei strain ANKA]
 gi|56499420|emb|CAI00231.1| 3'-5' exonuclease, putative [Plasmodium berghei]
          Length = 383

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 51/167 (30%), Gaps = 21/167 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLK 58
             + +D E             K  ++  V +      D  + ++D           + LK
Sbjct: 71  KIIGLDIE-----------GYKIGKNGTVSIIQICAKD--IYIFDLYKCDNSYLFAKYLK 117

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E  EN  +  V H+   + ++L   +N+++       T + A +  L  + K +   +  
Sbjct: 118 ELFENKSIIKVTHDCREDCSILFNQYNINLN--NIFDTQI-AYTLILKKSKKEL-YQISY 173

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                +                 L ++       + +    Y   DV
Sbjct: 174 DDLLYKCLFLNNNHKIYFHKIISLNNKIYLKRPIS-KELIHYAVQDV 219


>gi|90420992|ref|ZP_01228896.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334770|gb|EAS48546.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 239

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 56/207 (27%), Gaps = 34/207 (16%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAE-------DVCVILFAFGFDDHPVELWDCV 48
           M  +  D ET          +   G+  +            +       D    ++    
Sbjct: 1   MREIVFDTETTGLDPDVERVIEIGGVELWNHIPTGKNYHAFIRPAGRKVDPAAFDVHGIS 60

Query: 49  HD--------PVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICT 96
            D          +     E    +   ++AHN+ F+       LK      I     I T
Sbjct: 61  DDFLADKPLFSEIADEFLEFF--SGAKLIAHNAAFDVRFLNAELKRIDQPPIDPSVVIDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           L +AR      P+ L A+     + + ++ + G  L +        E +  R        
Sbjct: 119 LPMARRKFPMAPATLDALCSRFSVDTSRRDKHGALLDSELLAEVYIELIGGRQAALGL-- 176

Query: 154 WRLFGEYCKGDVT-VTREIFKRLEPLS 179
                E    D       I  R  PL 
Sbjct: 177 --AVEEDAHEDADGNVWRIAPRPVPLP 201


>gi|148261748|ref|YP_001235875.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
 gi|146403429|gb|ABQ31956.1| DNA polymerase III, epsilon subunit [Acidiphilium cryptum JF-5]
          Length = 225

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 53/192 (27%), Gaps = 47/192 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD---HPVELWDCVHDPVMP-------- 54
            D ET     L   G  +  E   + L    ++D     V       +  +P        
Sbjct: 7   FDTETTGLEPL---GGDRVIEVAAIEL----WNDLPTGKVFHTLIDPERDIPAEASRVHG 59

Query: 55  ----------------QVLKEAL-ENTDVTIVAHNSYFERTVL----KACFNLDIPIHRW 93
                             L E   E+    +VAHN+ F+   L           +   R 
Sbjct: 60  MTSADVAGKPKFAEIAAELLEFFAEDP---LVAHNAPFDFGFLDAEFARIGRAALDRARM 116

Query: 94  ICTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKP 148
           I TL LA  R  G+P++L A+     +          L+                 R   
Sbjct: 117 IDTLALAKQRFPGMPNSLDALCRRFDIDFSARTTHNALLDCKLLAEVYVELTGGRQRGLD 176

Query: 149 NHREAWRLFGEY 160
              E+     EY
Sbjct: 177 LAAESTIRLVEY 188


>gi|315080608|gb|EFT52584.1| 3'-5' exonuclease [Propionibacterium acnes HL078PA1]
          Length = 412

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 63/239 (26%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T + +R   LP  +L  + E    ++
Sbjct: 88  A--GTQWILHAATQDMPCLAM---DGLRPDDLFDTELASRLLNLPRVSLGPMVERYCGVT 142

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W++   Y   DV +  ++ +++    
Sbjct: 143 LLKEHSASDWSRRPL----------------PRDWQV---YAALDVELLNDLREKILSDL 183

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  +D      L+ I D+      Q    L 
Sbjct: 184 HEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|302335597|ref|YP_003800804.1| ribonuclease D [Olsenella uli DSM 7084]
 gi|301319437|gb|ADK67924.1| ribonuclease D [Olsenella uli DSM 7084]
          Length = 376

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 44/192 (22%), Gaps = 40/192 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L ID E     T                   + L      D    +   + D      
Sbjct: 20  RVLAIDTEFLRERTYF---------------PRLCLIQAATPDESAAIDPILIDD--LSP 62

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L   L +  +T V H    +  V+     L         T + A   G            
Sbjct: 63  LARLLTDESITKVFHACSQDLEVI--YDALHCVPGPIFDTQLAAAFLG------------ 108

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
               ++      L+   C     +     +             Y + DV     I+ ++ 
Sbjct: 109 ---HRQQIGYGALVDACCGVRLPKAESLTDWSRRPLDAEQLA-YAEDDVRYLPGIYDQMM 164

Query: 177 PLSSKEQELWYL 188
                   L +L
Sbjct: 165 AELIMRDRLPWL 176


>gi|322700217|gb|EFY91973.1| exosome complex exonuclease Rrp [Metarhizium acridum CQMa 102]
          Length = 831

 Score = 53.2 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 43/185 (23%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             + +D E     T + +               V L      D    +          +V
Sbjct: 243 KEIAVDLEHHDFRTYTGL---------------VCLMQVSTRDQDWIVDTLQPWRHKLEV 287

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALK-AVGE 114
           L +   N  +  V H +Y +   L+      + ++    T         P  +L   + +
Sbjct: 288 LNDVFANPSIVKVFHGAYMDMVWLQRDLG--LYVNGLFDTYFACDLLNYPGKSLAFLLSK 345

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +   + K  +  +                R  P           Y + D      IF  
Sbjct: 346 FVGFDADKQYQLADW-------------RIRPIP------EEMLYYARSDTHYLLYIFDN 386

Query: 175 LEPLS 179
           +    
Sbjct: 387 VRNEL 391


>gi|327403214|ref|YP_004344052.1| 3'-5' exonuclease, PolB [Fluviicola taffensis DSM 16823]
 gi|327318722|gb|AEA43214.1| 3'-5' exonuclease, PolB [Fluviicola taffensis DSM 16823]
          Length = 239

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 62/237 (26%), Gaps = 81/237 (34%)

Query: 2   ATLFIDFET------RSPIDLTKCGI-----------------------CKYAEDVCVIL 32
             LF+D ET       S ++L    +                         YAE   ++ 
Sbjct: 9   KILFLDIETVPEVYNYSDLELETTKLFDSKNARYLTEEKTKEDVYNEKAGIYAEFGKIVC 68

Query: 33  FAFGF-----DDHPVELWDCVHD--PVMPQVLKEALEN----TDVTIVAHNSY-FERTVL 80
            + GF         + +    HD    + +     LEN        +  HNS  F+   +
Sbjct: 69  ISVGFVHQSATGKSIRMTSFAHDDEETLLRQFVRLLENNYNTPKHVLCGHNSKEFDLPFI 128

Query: 81  KACF---NLDIP-------IHRWI----CTLVL-------ARSNGLPSALKAVGEALKLS 119
                   + +P          W      T+ L       A +     +L  +    K+ 
Sbjct: 129 CRRLLINGIALPNILNLAGKKPWEILHLDTMELWKFGDYKAYT-----SLALLCHIFKIP 183

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           + K                             +       YC+ DV    ++F R+ 
Sbjct: 184 TPKD--------------DISGADVARVYYEEQNLDRIRIYCEKDVVALIQLFLRMN 226


>gi|146337369|ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. ORS278]
 gi|146190175|emb|CAL74167.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Bradyrhizobium sp. ORS278]
          Length = 232

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 52/179 (29%), Gaps = 41/179 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKY--------AEDVCVILFA 34
           M  + +D ET     L    +                   +Y        AE   V   +
Sbjct: 1   MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPQRDMPAEAFAVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPI 90
             F           H   + +     + +    +V HN+ F+       L       IP 
Sbjct: 61  TEFLSDK----PLFH--EVVEDFLAFIGDA--PLVIHNASFDIGFINAELDRVKRAAIPR 112

Query: 91  HRWICTLVLARSNGLPSA--LKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
            R + TL+LAR      +  L  +     + + ++ + G  L A        + +  R 
Sbjct: 113 ERLVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQ 171


>gi|74195213|dbj|BAE28339.1| unnamed protein product [Mus musculus]
          Length = 1217

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/403 (11%), Positives = 104/403 (25%), Gaps = 54/403 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R   +       G +   +   Q + 
Sbjct: 771  EINKMISFWRNAHKRISSQMVVWLPRSALP----RVVTRHPSFDEEGHYGAILP--QVVT 824

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 825  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAA 878

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T       R   K+      Y  G  
Sbjct: 879  VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQS 938

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA---- 502
              +++       L       K        +    +            +      T     
Sbjct: 939  FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGWV 998

Query: 503  -CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
              + ++   R+        W +   A E+    G       + +   +        L   
Sbjct: 999  SLQDLRMIRREASR--KSRWKKWEVASERAWTGGTESEMFNKLESIAMSDTPRTPVLGCC 1056

Query: 562  LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNAT 618
            +   R+L    V                           +VQ+ + D   ++   M    
Sbjct: 1057 IS--RALEPSVVQGEFITSR----------------VNWVVQSSAVDYLHLMLVAMKWLF 1098

Query: 619  KAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
            +         +++HDE+     + D ++A+       +L   M
Sbjct: 1099 EEFAIDGRFCISIHDEVRYLVREEDRYHAALALQITNLLTRCM 1141


>gi|224088954|ref|XP_002308585.1| predicted protein [Populus trichocarpa]
 gi|222854561|gb|EEE92108.1| predicted protein [Populus trichocarpa]
          Length = 378

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 56/194 (28%), Gaps = 29/194 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEAL 61
            +  D E    ++L + G         ++  AF      + L D ++    + +V K AL
Sbjct: 54  IIGFDCE---GVNLCRHGALC------IMQLAF---PDAIYLVDAINGGESLIKVCKPAL 101

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E++ +T V H+   +   L   F   I +H  + T +                  +L   
Sbjct: 102 ESSYITKVIHDCKRDSEAL--YFQFGIKLHNVVDTQIAYSLIEEQEG------RTRLPGD 153

Query: 122 KMEEGKELI--ARFCKGETHECLYDRNKPNHREAW------RLFGEYCKGDVTVTREIFK 173
            +     L            +             W       +       DV     I+ 
Sbjct: 154 YISFVGLLADPRYCGVSYLEKEEVRVLLRQDPMFWTYRPLSEMMIRAAADDVRFLLCIYY 213

Query: 174 RLEPLSSKEQELWY 187
           ++    ++    + 
Sbjct: 214 KMMEKLNERSLWYL 227


>gi|194761126|ref|XP_001962783.1| GF15619 [Drosophila ananassae]
 gi|190616480|gb|EDV32004.1| GF15619 [Drosophila ananassae]
          Length = 1134

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 80/308 (25%), Gaps = 38/308 (12%)

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVT 411
               +   +RS V A  G KLV AD+   E  + +     +  GE               +
Sbjct: 780  PDRLGSELRSMVQAPPGYKLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKS 839

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +   ++  A+     R   KV+  A  Y  G +  + +        +      K    
Sbjct: 840  NGSDMHSI-TAKAVGISRDHAKVINYARIYGAGQQFAETLLRQFNPTFSASEAKAKAMKM 898

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                +    +                      + +       +        E  +   Q 
Sbjct: 899  FSITKGKREY---------------RLREEFHDELDDRAYSSY--------EASRLAIQR 935

Query: 532  IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  +   +                 +   S     +     +R+    +     + +
Sbjct: 936  NRTIGEV-FHRPIWQGGTESAMFNRLEDIATQSQPQTPFLGGRLSRALEADSDPTQEQRF 994

Query: 592  TYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS--- 645
                     +VQ+ + D   ++   M           L+ HDE+     +   + A+   
Sbjct: 995  L--PTRINWVVQSGAVDFLHLMLVSMRWLMGPHVRFCLSFHDELRYLVKEEVAYKAALAM 1052

Query: 646  MLYHLMTS 653
             + +LMT 
Sbjct: 1053 HITNLMTR 1060



 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 63/231 (27%), Gaps = 28/231 (12%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL----- 109
             L          +V HN  ++R  LK  + ++   +R++ T+ L       ++      
Sbjct: 239 DELIPLGTEGPGLVVGHNVSYDRARLKEQYLIEDTGYRFLDTMSLHMCVSGVTSYQRAML 298

Query: 110 --------KAVGEALKLSSQKMEEGKELI--ARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   + +G   K S   + E   L         E      +      R+ ++    
Sbjct: 299 KSKKEPAPEDLGWLDKSSLNSLVEVHRLYCGGEPLSKEPRNIFVEGTLEQVRQHFQSLVN 358

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-TIND----------RGYCVDVALA--HT 206
           YC  DV  T  + + L PL ++           +                +  +      
Sbjct: 359 YCASDVEATHRVLQALYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYIRESQLTYED 418

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           LN        +  +E  SL              + W   E  L      + 
Sbjct: 419 LNIEAKHHLGRRAEEACSLLLDEQYRKNLWLWDEDWSVQELKLKQPPKQKP 469


>gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
 gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
          Length = 1514

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 21/140 (15%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-- 56
            +  D ET         + + G  K  +   +  F+   +      +       +     
Sbjct: 458 YIVFDIETTGLSQKKNKIIEIGAVKVKDGEEIDRFSEFINPEEPIPYSIEQLTSITDEMV 517

Query: 57  ---------LKEALE-NTDVTIVAHNSYFERTVL-KACFNLDIPIHR-WICTLVLARSNG 104
                    L + LE   D  +VAHN+ F+   + K   +L +      + T+ L+    
Sbjct: 518 MHAPTVDVILPKFLEFCGDDIVVAHNAAFDTGFIKKNAKDLGMKFDNTIMDTMTLSHVLL 577

Query: 105 LPSA---LKAVGEALKLSSQ 121
                  L  V +AL + ++
Sbjct: 578 PELGKFTLDRVCKALNVKNE 597


>gi|218528419|ref|YP_002419235.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           chloromethanicum CM4]
 gi|218520722|gb|ACK81307.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           chloromethanicum CM4]
          Length = 297

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 21/149 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCV-----ILF---AFGFDDHPVELW-----D 46
           M  + IDFET +    + C +   + E   V      L       F    + +      D
Sbjct: 1   MKVVAIDFETANERRDSACAVGLAWIEGGRVARRESRLIRPPQLRFSPGNIRVHGILPAD 60

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
               P  P+V+ E L + +   ++AHN+ F+  VL    A +   +P     CTL +AR 
Sbjct: 61  VRDAPTFPEVIAEFLPDLSGGLMLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIARR 120

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKE 128
                    L  V   L +  +  + G++
Sbjct: 121 VFPDPAGHGLAKVAGRLGIRFEHHDAGED 149


>gi|67458568|ref|YP_246192.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|75536966|sp|Q4UN31|DPO3E_RICFE RecName: Full=DNA polymerase III subunit epsilon
 gi|67004101|gb|AAY61027.1| DNA polymerase III epsilon chain [Rickettsia felis URRWXCal2]
          Length = 229

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 50/184 (27%), Gaps = 36/184 (19%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYAEDVCVILF-AFGFDDHPV 42
             + +D ET                       LT      Y      + F A+       
Sbjct: 5   REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFDAYRIHGISG 64

Query: 43  ELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFNLDIPIHR 92
           E        H   +     E + ++   ++ HN+ F+          LK      + +  
Sbjct: 65  EFLKDKPLFH--TIADDFLEFISDS--KLIIHNAPFDIKFLNHELSLLKRAEIKLLELSN 120

Query: 93  WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPN 149
            I TLV+ARS        L A+ +  K+ +   +    L       E   E    R    
Sbjct: 121 AIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTGGRQSAF 180

Query: 150 HREA 153
               
Sbjct: 181 KMVD 184


>gi|328767973|gb|EGF78021.1| hypothetical protein BATDEDRAFT_27210 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 826

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 50/189 (26%), Gaps = 37/189 (19%)

Query: 5   FIDF----ETRSP---------IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP 51
           +ID     ET            +DL       Y    C++  +   +D    L D +   
Sbjct: 250 WIDTPDKLETLCSILEGVTEFAVDLEHHDFRSYQGFTCLMQISTRTED---FLVDTLILR 306

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK 110
                L  +  N  +  V H +  +   L+  F   + +     T   + +  L   +L 
Sbjct: 307 NSLHALNTSFANPQIVKVFHGAEMDIQWLQRDFG--VYVVDLFDTYHASHALELEGHSLA 364

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
            + +                    K         R  P      +    Y + D      
Sbjct: 365 FLLKYY------------CDVVTDKRYQLADWRIRPLP------KEMVHYARMDTHYLLY 406

Query: 171 IFKRLEPLS 179
           IF R+    
Sbjct: 407 IFDRMRNEL 415


>gi|326496741|dbj|BAJ98397.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326514394|dbj|BAJ96184.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 332

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 57/207 (27%), Gaps = 32/207 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G         ++  AF      V L D       + +  K AL
Sbjct: 49  VIGFDCE---GVDLCRNGALC------IMQIAF---PDAVYLVDAIEGGKELVEACKPAL 96

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+  VT V H+   +   L   F   I +H  + T +         +L    E  K +  
Sbjct: 97  ESDHVTKVIHDCKRDSEAL--YFQFGIKLHNVMDTQIA-------YSLIEEQEGKKRAYD 147

Query: 122 KMEEGKELI---ARFCKGETHECLYDRNKPNHREAW------RLFGEYCKGDVTVTREIF 172
                  L+            +             W       +       DV     I 
Sbjct: 148 VYISFVSLLADPRYCGMPYPEKEEVRTLLRQDPNFWKNRPLSEMMIRAATDDVRFLLNIH 207

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCV 199
           +++    SK    W L         C 
Sbjct: 208 EKMMEKLSKV-SSWRLAVRSELYCRCF 233


>gi|322495113|emb|CBZ30417.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 743

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 72/277 (25%), Gaps = 47/277 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E              Y+      L      +    + DC+        L     
Sbjct: 254 EIAVDLE----------HHDFYSYQGFTCLMQISTREED-FIVDCLKLRSSMGALAPVFL 302

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  +  V H +  +   L+   +  + +  +  T V  ++  +P +L             
Sbjct: 303 NPSILKVFHGAREDIRWLQK--DFSLYVVNFFDTGVALQTLHMPYSLAFA---------- 350

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                  +  FC+ + ++     +      +      Y + D      +  RL+ L    
Sbjct: 351 -------VDHFCQVKLNKKYQTADWRVRPLS-AEMVHYARQDTHFLLYVHDRLKALLLNS 402

Query: 183 QEL----WYLDQTINDRGYCVDVALA------HTLNQIVDVERTKLDQELESLTYGLVSS 232
           +        L    N+                    +I          +++      V +
Sbjct: 403 EGRASIGSLLVHVYNESKQLSLQIYEKPNVVPEETYKIALGRSLSGLNKVQEKVACDVFN 462

Query: 233 SRCLEKL------KTWLFLETGLHLEDLTETTCQRVL 263
            R              L L + L +     TT + +L
Sbjct: 463 WRDSAAREVDDSPMAVLHLSSVLSIASKLPTTAKELL 499


>gi|167527362|ref|XP_001748013.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773431|gb|EDQ87070.1| predicted protein [Monosiga brevicollis MX1]
          Length = 837

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 77/298 (25%), Gaps = 29/298 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E  S          +  +    +            L D +      ++L     
Sbjct: 287 ELAIDLEAHS---------YRTYQGFTCL-MQLSTRSED-YLIDTLALRDDLKLLNVIFA 335

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSS 120
           +  +  V H +  +   L+   +  + I     T    R    P  +L  + +      +
Sbjct: 336 DPAILKVLHGADSDILWLQR--DHSLYIVNMFDTGQATRVLNFPRHSLAWLLQHYCNFKA 393

Query: 121 QKMEEGKELIARFCKGETHECLYDRN---KPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            K  +  +   R    E               +                + R +++R + 
Sbjct: 394 DKKYQLADWRVRPLSEEMLHYARCDTHFLLYIYDRLHSELLAQGNEQANLLRAVYQRSKE 453

Query: 178 -LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
               + ++ +Y   T  D    +  +L  +  ++        DQ                
Sbjct: 454 LCLQRYEKPFYSQATAEDALNRMSRSLVPSAVELFMALHAWRDQVARDEDESP------- 506

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL 294
              +  L     L L     T   ++L+  + + P              +    ++ +
Sbjct: 507 ---RYVLPDHMLLELASRAPTETGQILACCQPIPPLVRVNVQLIQDIILTKGEAIHAM 561


>gi|227514420|ref|ZP_03944469.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
 gi|227087286|gb|EEI22598.1| DNA-directed DNA polymerase III [Lactobacillus fermentum ATCC
           14931]
          Length = 189

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 37/153 (24%)

Query: 1   MA------TLFIDFETRSPIDLTKCGIC-------KYAEDVCVILFAFGFDDHPVELW-- 45
           M        + +DFET S    + C +        +  ++   +      +      W  
Sbjct: 5   MKGGLFVNFIAMDFETASAKRFSACSLAITIVRNSQIQDEFYTL-----INPQTPFFWRN 59

Query: 46  ---------DCVHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIH 91
                    D    P  P+V    +     D  ++AHN+ F+ +VLK     F ++ P++
Sbjct: 60  TQVHGIHERDVKDAPTFPEVWEHIQEFFTPDKLVIAHNATFDNSVLKNTLLHFEIEPPVY 119

Query: 92  RWICTLVLARSN---GLPSALKAVGEALKLSSQ 121
           + + TL  +R          L  + + L +   
Sbjct: 120 QTLDTLKTSRQLFPAFPNHKLNTICDQLNIDLH 152


>gi|254468292|ref|ZP_05081698.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
 gi|207087102|gb|EDZ64385.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
          Length = 219

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 47/180 (26%), Gaps = 38/180 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF--AFGFDDHPVEL-----WDCVHD--- 50
           M  +F+D ET            +  E   V +       +   V +      D       
Sbjct: 1   MRQIFLDTETTGLDPAQG---HRIIEIAAVEMINRQVTNNQFHVYINPEREIDEAAQEVH 57

Query: 51  -------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI--- 94
                          + +     + ++++ I  HN+ F+   L       I         
Sbjct: 58  GLTLEFLSDKPGFESISEKFISFIADSELII--HNAPFDIGFLNMELG-RIKKGVVEDYA 114

Query: 95  ----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                +LV+AR         L A+     + + +      L+      E    +    + 
Sbjct: 115 EVITDSLVMARELRPGQRNNLDALCRHYGVDNSERNLHGALLDSLLLAEVFIGMTRGQEA 174


>gi|153938164|ref|YP_001389626.1| DNA polymerase III subunit epsilon [Clostridium botulinum F str.
           Langeland]
 gi|152934060|gb|ABS39558.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. Langeland]
 gi|295317718|gb|ADF98095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum F str. 230613]
          Length = 309

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 37/147 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVEL-----------WDCV 48
           M  + IDFET +    + C I     +D  ++          V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  HDPVMPQVLKEALENTDV-----------TIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
              + P ++++ LE   +            ++AHN+ F+ +VL+     +N+ +P   +I
Sbjct: 53  IHGIRPHMVQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYI 112

Query: 95  CTLVLA---RSNGLPSALKAVGEALKL 118
           CT+ L+    SN   + L  V   L  
Sbjct: 113 CTMKLSKNFYSNIDNARLNTVNNFLGY 139


>gi|121485001|gb|ABA29497.2| hypothetical protein [Campylobacter jejuni]
          Length = 264

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 46/201 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 79  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 138

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 139 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 188

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD----QTINDRG 196
                    + +      EYC+ DV  T  +F + E + +   E  Y+D         R 
Sbjct: 189 --------FYEDELEKIHEYCESDVLNTYMLFLKYELIKANVSEEDYVDFLSYMRDFLRS 240

Query: 197 YCVDVALAHTLNQIVDVERTK 217
              D +      +  + E +K
Sbjct: 241 KKSDRSYTEVFAKACESEISK 261


>gi|86150368|ref|ZP_01068594.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85839193|gb|EAQ56456.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 264

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 46/201 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 79  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 138

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 139 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 188

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD----QTINDRG 196
                    + +      EYC+ DV  T  +F + E + +   E  Y+D         R 
Sbjct: 189 --------FYEDELEKIHEYCESDVLNTYMLFLKYELIKANVSEEDYVDFLSYMRDFLRS 240

Query: 197 YCVDVALAHTLNQIVDVERTK 217
              D +      +  + E +K
Sbjct: 241 KKSDRSYTEVFAKACESEISK 261


>gi|67515517|ref|XP_657644.1| hypothetical protein AN0040.2 [Aspergillus nidulans FGSC A4]
 gi|40746203|gb|EAA65359.1| hypothetical protein AN0040.2 [Aspergillus nidulans FGSC A4]
 gi|259489774|tpe|CBF90322.1| TPA: DNA polymerase gamma (AFU_orthologue; AFUA_5G12640)
           [Aspergillus nidulans FGSC A4]
          Length = 1134

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/331 (12%), Positives = 86/331 (25%), Gaps = 75/331 (22%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ + A  G   V AD+   E
Sbjct: 666 PQIIPMGTITRRAVENTWLTASNAKAN------RVGSELKAMIKAPPGYAFVGADVDSQE 719

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                  +++        T       R   KV      Y
Sbjct: 720 L-WIASLIGDAQFQLHGGNAIGFMTLEGSKAAGTDMHSRTAKILGISRNDAKVFNYGRIY 778

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +++        +   +E + A+   R + +N       + F+  
Sbjct: 779 GAGVKFAATLLRQFNPSMSERETQEVASKLYKETKGAKTTRRLLSDNPFWRGGTESFVFN 838

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E      R +                  +       A  RR +        +      
Sbjct: 839 KLEEFADQERPRTP----------------VLGAGITEALMRRFINRGSFMTSR------ 876

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 877 ------------------------------------INWAIQSSGVDYLHMLIIAMDYLI 900

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                   + +TVHDEI     + D++ A++
Sbjct: 901 RRFNIQARLAITVHDEIRYLVKEQDKYRAAL 931


>gi|221121078|ref|XP_002157951.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 758

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 48/180 (26%), Gaps = 34/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E             +  +   + L           + D +        + E  
Sbjct: 261 KEIAVDLE---------HHSYRSFQGF-LCLMQISTRFED-FIIDTLALREEMYKINEIF 309

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALK-AVGEALKLS 119
            + ++  V H +  +   L+  F   + +     T   AR+      +L   + +   + 
Sbjct: 310 SDPNILKVMHGADSDIGWLQRDFG--VYVVNMFDTGQAARTLHEDRFSLAYLLSKYCNVD 367

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           +QK  +  +                R  P      +    Y + D      ++  L    
Sbjct: 368 AQKQYQLADW-------------RIRPIP------KEMILYAQEDTHYLLYVYDILRNQL 408


>gi|254473302|ref|ZP_05086699.1| ribonuclease D [Pseudovibrio sp. JE062]
 gi|211957418|gb|EEA92621.1| ribonuclease D [Pseudovibrio sp. JE062]
          Length = 405

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 73/244 (29%), Gaps = 24/244 (9%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + +     +     L D + + +  +     + NTD+  V H +  +  ++       
Sbjct: 37  PKLCVIQIA-NPDHAVLVDALAEDLDLEPFFALMRNTDIVKVFHAARQDIEII-YHLGGF 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +P      + V A   G   +                   +L+++       +     + 
Sbjct: 95  VP-SPLFDSQVAAMVCGFGDS---------------VSYDQLVSKVTGERIDKSSRFTDW 138

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND----RGYCVDVAL 203
                       Y   DVT  RE++  L+    ++    +++  +        Y  D A 
Sbjct: 139 SRRPL-TNKQLAYALADVTHLREVYLFLKKQLEQKGRSHWVEDEMATLSSIDTYRSDPAK 197

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
           A    + + V + +    L+ L +     ++  +  +  +  +  +      +      L
Sbjct: 198 AWQRMK-LRVRKPRDLAVLKELAFWREQEAQKRDIPRNRVIKDDAIFEVSTQKPQTSEAL 256

Query: 264 SSNK 267
              +
Sbjct: 257 GHLR 260


>gi|27375751|ref|NP_767280.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27348889|dbj|BAC45905.1| DNA polymerase III epsilon chain [Bradyrhizobium japonicum USDA
           110]
          Length = 239

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 54/178 (30%), Gaps = 39/178 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV +F                      AF   
Sbjct: 1   MREIVLDTETTGLDPLRG---DRLVEIGCVEMFNRMPTGQTYHVYINPERDMPAEAFAVH 57

Query: 39  DHPVELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIH 91
               E        H   +     E + +    +V HN+ F+ +     L       IP  
Sbjct: 58  GLSAEFLSTKPVFH--EVADAFLEFIGDA--PLVIHNASFDISFINAELDRIKRAAIPRE 113

Query: 92  RWICTLVLARSNGLPSA--LKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           + + TL+LAR      +  L  +     + + ++ + G  L A        + +  R 
Sbjct: 114 QLVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQ 171


>gi|329114834|ref|ZP_08243590.1| Ribonuclease D [Acetobacter pomorum DM001]
 gi|326695731|gb|EGE47416.1| Ribonuclease D [Acetobacter pomorum DM001]
          Length = 406

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 79/263 (30%), Gaps = 35/263 (13%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           E+   +D        Y  ++C++      D   + L D + + +    LK    +T V  
Sbjct: 35  ESFVTVDTEFMREQTYWPELCLVQIGATHD---IVLIDALAEGIDLTPLKNLFADTAVLK 91

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEAL-KLSSQKMEE 125
           V H +  +  +    F  D        T V A   G        ++  +L      K   
Sbjct: 92  VFHAARQDLEIFLHLF--DALPTPLFDTQVAAMVAGFGDQVGYDSLVGSLTGHMIDKSHR 149

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
             +   R                           Y  GDVT  R +++RL     +EQ L
Sbjct: 150 FTDWSVRPLSPAQLT-------------------YAAGDVTWLRLVYERLVKKLEQEQRL 190

Query: 186 WYL---DQTINDR-GYCVDVAL-AHTLNQI-VDVERTKLDQELESLTYGLVSSSRCLEKL 239
            ++      + D   +  D       L     +     + + + +L            + 
Sbjct: 191 DWVAAEMAELEDPATFRPDPEKQWERLRARTNNRRMLAVLRAIAALREREAQRVNVPRQR 250

Query: 240 KTWLFLETGLHLEDLTETTCQRV 262
              +  E+ L +   T +T + +
Sbjct: 251 L--VKDESLLEIAATTPSTPEAL 271


>gi|213510932|ref|NP_001133834.1| Exosome component 10 [Salmo salar]
 gi|209155512|gb|ACI33988.1| Exosome component 10 [Salmo salar]
          Length = 885

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 52/185 (28%), Gaps = 25/185 (13%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L      D    + D +       +L EA  +  +  V H +  +   L+    L I   
Sbjct: 327 LMQISTRDED-FIIDTLELRSELYILNEAFTDPAIVKVFHGADSDIEWLQKDLGLYI--V 383

Query: 92  RWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
               T   +R+  L   +L  + +    + S K  +  +                R  P 
Sbjct: 384 NMFDTHQASRTLNLGRHSLDHLLKLFCNVDSDKRYQLADW-------------RIRPLP- 429

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
                    +Y + D      ++ RL     +          +       D++L   +  
Sbjct: 430 -----DEMFQYARADTHYLLYVYDRLRVDLWEVGNGQPALLQMVWHKSK-DISLKKYMKP 483

Query: 210 IVDVE 214
           +   +
Sbjct: 484 LFTDD 488


>gi|297597041|ref|NP_001043365.2| Os01g0566900 [Oryza sativa Japonica Group]
 gi|52076246|dbj|BAD45014.1| egalitarian-like [Oryza sativa Japonica Group]
 gi|125526475|gb|EAY74589.1| hypothetical protein OsI_02478 [Oryza sativa Indica Group]
 gi|215712371|dbj|BAG94498.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673376|dbj|BAF05279.2| Os01g0566900 [Oryza sativa Japonica Group]
          Length = 307

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 24/205 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G         ++  AF      V L D       + +  K AL
Sbjct: 24  VIGFDCE---GVDLCRHGALC------IMQIAF---PDAVYLVDAIEGGKELIEACKPAL 71

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALK 117
           E+  VT V H+   +   L   F   I +H  + T +         G           + 
Sbjct: 72  ESEYVTKVIHDCKRDSEAL--YFQFGIKLHNVMDTQIAYSLLEEQEGKKRGYDEYISFVS 129

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           L +     G   +A   K E    L    N   HR    +       DV     I +++ 
Sbjct: 130 LLADPRYCG---MAYPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSIHEKMM 186

Query: 177 PLS-SKEQELWYLDQTINDRGYCVD 200
                       +   +  R +C++
Sbjct: 187 EKLSKVSLWRLSVRSELYCRCFCIN 211


>gi|157415392|ref|YP_001482648.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386356|gb|ABV52671.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 81116]
          Length = 264

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 63/203 (31%), Gaps = 46/203 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M       +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 79  IDGQNEKEMIANFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 138

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++  FC+     
Sbjct: 139 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKLFCEN---- 192

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD----QTINDRG 196
                             EYC+ DV  T  +F + E + +   E  Y+D         R 
Sbjct: 193 ------------ELEKIHEYCESDVLNTYMLFLKYELIKANVSEEDYIDFLSYMRDFLRA 240

Query: 197 YCVDVALAHTLNQIVDVERTKLD 219
              D +      +  + E +K+ 
Sbjct: 241 KKSDRSYTEVFAKACESEISKVQ 263


>gi|86749614|ref|YP_486110.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
 gi|86572642|gb|ABD07199.1| ribonuclease D [Rhodopseudomonas palustris HaA2]
          Length = 382

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 12/131 (9%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
               + D +   +  +   + + N +V  V H +  +  ++     +    H    T V 
Sbjct: 48  DEAVVVDTLAPGIDLKPFFDLMANENVLKVFHAARQDIEIVWHRAGIV--PHPIFDTQVA 105

Query: 100 ARSNGLPSA--LKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           A   G   +     + E +      K     +   R    E                   
Sbjct: 106 AMVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSRRPLTDEQLHYAVSDVTHLRDV---- 161

Query: 157 FGEYCKGDVTV 167
              +   D  +
Sbjct: 162 ---FAALDADL 169


>gi|226947476|ref|YP_002802567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
 gi|226841365|gb|ACO84031.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A2 str. Kyoto]
          Length = 309

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 37/147 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVEL-----------WDCV 48
           M  + IDFET +    + C I     +D  ++          V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  HDPVMPQVLKEALENTDV-----------TIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
              + P ++++ LE   +            ++AHN+ F+ +VL+     +N+ +P   +I
Sbjct: 53  IHGIRPHMVQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYI 112

Query: 95  CTLVLA---RSNGLPSALKAVGEALKL 118
           CT+ L+    SN   + L  V   L  
Sbjct: 113 CTMKLSKNFYSNIDNARLNTVNNFLGY 139


>gi|168177595|ref|ZP_02612259.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
 gi|182670548|gb|EDT82522.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum NCTC 2916]
          Length = 309

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 37/147 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVEL-----------WDCV 48
           M  + IDFET +    + C I     +D  ++          V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  HDPVMPQVLKEALENTDV-----------TIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
              + P ++++ LE   +            ++AHN+ F+ +VL+     +N+ +P   +I
Sbjct: 53  IHGIRPHMVQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYI 112

Query: 95  CTLVLA---RSNGLPSALKAVGEALKL 118
           CT+ L+    SN   + L  V   L  
Sbjct: 113 CTMKLSKNFYSNIDNARLNTVNNFLGY 139


>gi|148378258|ref|YP_001252799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 3502]
 gi|148287742|emb|CAL81808.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
          Length = 309

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 37/147 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVEL-----------WDCV 48
           M  + IDFET +    + C I     +D  ++          V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  HDPVMPQVLKEALENTDV-----------TIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
              + P ++++ LE   +            ++AHN+ F+ +VL+     +N+ +P   +I
Sbjct: 53  IHGIRPHMVQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYI 112

Query: 95  CTLVLA---RSNGLPSALKAVGEALKL 118
           CT+ L+    SN   + L  V   L  
Sbjct: 113 CTMKLSKNFYSNIDNARLNTVNNFLGY 139


>gi|169347247|ref|ZP_02866186.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
 gi|169296643|gb|EDS78774.1| exonuclease family protein [Clostridium perfringens C str. JGS1495]
          Length = 302

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 25/151 (16%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDP 51
           M  + IDFET          I LT     K  E+    +      F    + +     + 
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKNNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
                    + + +K+ +      ++AHN+ F+ +VL+     +++  P   + CT+V+A
Sbjct: 61  VENERTFNEIWEEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 101 ---RSNGLPSALKAVGEALKLSSQKMEEGKE 128
                +     L  V EAL         G++
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFEFSHHHAGED 149


>gi|319406407|emb|CBI80047.1| DNA polymerase III epsilon chain [Bartonella sp. 1-1C]
          Length = 235

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 24/144 (16%)

Query: 1   MATLFIDFETRSPID----------LTKCGICKYAEDVCVIL--FAFGFDDHPVELWDCV 48
           M  +  D ET               +             V L        D  V +    
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMVNRYLTGRRFHVYLNPQGVVIPDEVVAIHGLT 60

Query: 49  H----DPVMPQVLKEALEN--TDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLV 98
           +    D      + +AL +     TIVAHN+ F+       L+      I     I TL 
Sbjct: 61  NERLKDEKKFDDIVDALLDFIDGATIVAHNANFDIGFLNAELERVNKPLINSDNVIDTLS 120

Query: 99  LARSNGL--PSALKAVGEALKLSS 120
           +AR      P++L  + +   + +
Sbjct: 121 IARRRFPMGPNSLDVLCKRFGIDN 144


>gi|121601718|ref|YP_989156.1| ribonuclease D [Bartonella bacilliformis KC583]
 gi|120613895|gb|ABM44496.1| ribonuclease D [Bartonella bacilliformis KC583]
          Length = 391

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 50/165 (30%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      +    L D +   +  Q   + + + ++  V H +  +  ++       
Sbjct: 37  PQLCLIQLASPNSTA-LIDPMVPDIDLQPFFDLMIDKNIVKVFHAARQDIEII-YHLGRI 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           IP      T +     G   ++         + Q +++        C+  +         
Sbjct: 95  IPF-PLFDTQIAGAICGFGDSISYDQIVYHCTGQHLDKSSRFTDWSCRPLS--------- 144

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                       Y   DVT  R+++  L+    + +   ++D  +
Sbjct: 145 -------EKQILYALADVTYLRDVYLSLKKQLEESKRFHWMDGEM 182


>gi|319775680|ref|YP_004138168.1| ribonuclease D [Haemophilus influenzae F3047]
 gi|317450271|emb|CBY86487.1| ribonuclease D [Haemophilus influenzae F3047]
          Length = 380

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 78/272 (28%), Gaps = 46/272 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  Y     + L    +D   V L D        P      L 
Sbjct: 33  VALDTE--------FMRVSTYF--PKLGLIQL-YDGERVSLIDPLAITDFSP--FVALLS 79

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-EALKLS 119
           N  V  V H+   +  V    F  D      I T ++AR  GL   + L  +  + L + 
Sbjct: 80  NPKVLKVLHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNIE 137

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K       I R                       +  +Y  GDV     ++  LE   
Sbjct: 138 IDKGATRTNWIKRPLS-------------------DIQLQYAAGDVWYLLPLYHILEKEL 178

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           +K      +            +A  H L +    +          L    +S  R L + 
Sbjct: 179 AKTPWEQAVRDDCELV-----LAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRILAQW 233

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
           +  + +E  L L  + ++     L    K  P
Sbjct: 234 RQNVAIERDLALSYIVKS---EHLWKVAKNNP 262


>gi|168206308|ref|ZP_02632313.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
 gi|170662180|gb|EDT14863.1| exonuclease family protein [Clostridium perfringens E str. JGS1987]
          Length = 302

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 25/151 (16%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDP 51
           M  + IDFET          I LT     K  E+    +      F    + +     + 
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKNNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
                    + + +K+ +      ++AHN+ F+ +VL+     +++  P   + CT+V+A
Sbjct: 61  VENERTFNEIWEEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 101 ---RSNGLPSALKAVGEALKLSSQKMEEGKE 128
                +     L  V EAL         G++
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFEFSHHHAGED 149


>gi|90411623|ref|ZP_01219633.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK]
 gi|90327513|gb|EAS43866.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK]
          Length = 374

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 72/249 (28%), Gaps = 34/249 (13%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69
           T S + L    +        + L    FD   + L D +    +     + L +  V  V
Sbjct: 21  TYSVVMLDTEFVRTRTLYPKLGLIQM-FDGDNLVLIDPIEIEDLT-PFWDLLRDQSVIKV 78

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-----SALKAVGEALKLSSQKME 124
            H    +  V +            I T ++A   G        +L  V E + +  +K  
Sbjct: 79  LHACGEDLEVFQHHAG--CLPTPMIDTQLMAAFLGHGVSAGFGSL--VSEYVGVDLEK-- 132

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF----KRLEPLSS 180
            G+       +  T                    +Y   DV     ++    ++++    
Sbjct: 133 -GEARTNWLARPLT----------------DKQLDYAAADVFYLLPLYETLLEKVKAKGW 175

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLK 240
            +         +  R   VD+  A+ L +       K    L+      +  +R  +   
Sbjct: 176 MDALELECTALMQKRTQGVDLDKAYRLVKNAWQLNPKQLAVLQQAAKWRILEARKRDIAL 235

Query: 241 TWLFLETGL 249
            ++  E  +
Sbjct: 236 NFVVKELHI 244


>gi|83942499|ref|ZP_00954960.1| ribonuclease D [Sulfitobacter sp. EE-36]
 gi|83846592|gb|EAP84468.1| ribonuclease D [Sulfitobacter sp. EE-36]
          Length = 385

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 54/200 (27%), Gaps = 41/200 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFG---FDDHPVELWDCVHDPVM 53
             + +D E     T                   + L        DD    L D + + + 
Sbjct: 21  DYVTVDTEFLRERTYYS---------------KLCLIQLAMPGTDDSNAVLVDPLSEGLS 65

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
              L     +T V  V H +  +  +     +  +       T V A   G        G
Sbjct: 66  LDPLYTLFRDTSVVKVFHAARQDLEIF--YVDAGVFPEPLFDTQVAAMVCGF-------G 116

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +          + L+ +       +     +      +      Y   DVT  R+I++
Sbjct: 117 EQVGY--------ETLVRKIAHQPLDKTSRFTDWSRRPLSDAQAK-YALADVTHLRQIYE 167

Query: 174 RLEPLSSKEQELWYLDQTIN 193
            L     +     ++ + + 
Sbjct: 168 FLARKLEQTGRARWVQEELE 187


>gi|262342093|gb|ACY54557.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 38/141 (26%), Gaps = 10/141 (7%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R    A+ G+ +V ADL+GIE R+LA          A                +   A  
Sbjct: 13  RKLFTATPGQVMVGADLSGIELRMLAHYL-------ARYDEGRYASILLHGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   K +  A  Y  G         +    L+      K     + + DA      
Sbjct: 66  IGISRRQVKTVTYAFLYGAGDSKL---GRSYDPQLSEQQAKKKGKEIRQAYMDAVPGLEK 122

Query: 485 MQENHPEHAIEDLFIGTACER 505
           +       A           R
Sbjct: 123 LVTAVKSKAESGYINLCDSRR 143


>gi|126724532|ref|ZP_01740375.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacterales bacterium HTCC2150]
 gi|126705696|gb|EBA04786.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacterales bacterium HTCC2150]
          Length = 230

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 45/184 (24%)

Query: 1   MATLFIDFETR-----SPIDLTKCGI-------------CKY--------AEDVCVILFA 34
           M  L +D ET      S   + + G               +Y        AE   V    
Sbjct: 1   MRELVLDTETTGFDPFSGDRIVEIGAVELFNHMPTGKTYHQYINPQRAMPAEAFEVHGL- 59

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL----DI 88
               D        +    +   + +A  +      +V HN+ F+   L A  +      +
Sbjct: 60  ---GDE------FLARQPVFADIAQAFVDFVGTDLLVIHNASFDMKFLNAELDWLGRAKL 110

Query: 89  PIHRWICTLVLAR--SNGLPSALKAVGEALKLSSQ-KMEEGKELIARFCKGETHECLYDR 145
           P+ + + TL +AR    G P++L A+     +++  + + G  L +        E +  R
Sbjct: 111 PMEQSLDTLAIARKKFPGSPASLDALCRRFGVNNDAREKHGALLDSEILAEVYLELIGGR 170

Query: 146 NKPN 149
               
Sbjct: 171 QPDF 174


>gi|226487924|emb|CAX75627.1| Exosome component 10 [Schistosoma japonicum]
          Length = 860

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 51/195 (26%), Gaps = 37/195 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E  S                   L      D    + D +       +L E  
Sbjct: 278 RYIAVDLEHHSYRSFLGIT----------CLIQISTLDTD-YIIDALALHDHLSILNEVF 326

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
            +  +  V H S  +   L+  F   + +     T V AR       +L  + +    ++
Sbjct: 327 TDPKIVKVFHGSDSDLMWLQRDFG--VYVVNLFDTGVAARLLQHGRFSLSYLLQRYVNIN 384

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                R  P          EY + D   T  +      + 
Sbjct: 385 PNKKYQLADW-------------RIRPLP------NELIEYARTD---THYLLHIASRMC 422

Query: 180 SKEQELWYLDQTIND 194
            + Q+   L  T   
Sbjct: 423 RELQDRNLLSVTFER 437


>gi|153933783|ref|YP_001382659.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935123|ref|YP_001386211.1| DNA polymerase III subunit epsilon [Clostridium botulinum A str.
           Hall]
 gi|152929827|gb|ABS35327.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. ATCC 19397]
 gi|152931037|gb|ABS36536.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A str. Hall]
          Length = 309

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 37/147 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVEL-----------WDCV 48
           M  + IDFET +    + C I     +D  ++          V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  HDPVMPQVLKEALENTDV-----------TIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
              + P ++++ LE   +            ++AHN+ F+ +VL+     +N+ +P   +I
Sbjct: 53  IHGIRPHMVQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYI 112

Query: 95  CTLVLA---RSNGLPSALKAVGEALKL 118
           CT+ L+    SN   + L  V   L  
Sbjct: 113 CTMKLSKNFYSNIDNARLNTVNNFLGY 139


>gi|85094529|ref|XP_959900.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
 gi|28921357|gb|EAA30664.1| hypothetical protein NCU02256 [Neurospora crassa OR74A]
 gi|40804632|emb|CAF05892.1| related to nucleolar 100K polymyositis-scleroderma protein
           [Neurospora crassa]
          Length = 822

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 45/179 (25%), Gaps = 31/179 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA 60
             + +D E              Y     + L      +    + D +       +VL E 
Sbjct: 248 KEIALDLE--------HHDFRSYTGL--LSLMQISTREKD-WVIDTLQPWRHKLEVLNEV 296

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
             N ++  V H ++ +   L+      + +     T       G P      G +L    
Sbjct: 297 FANPNIVKVLHGAFMDVIWLQRDLG--LYVVGLFDTYHACAVLGYP------GRSLGYLL 348

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K  E +       K         R  P           Y + D      IF  +    
Sbjct: 349 SKFAEFEA-----DKKYQLADWRIRPLP------EEMFYYARSDTHYLLYIFDMIINEL 396


>gi|291557306|emb|CBL34423.1| CRISPR-associated protein Cas2, E. coli subfamily [Eubacterium
           siraeum V10Sc8a]
          Length = 268

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 41/155 (26%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK---- 58
           ID ET               +D  + L A   ++             D  +P+ +     
Sbjct: 108 IDIETTGLNP----------DDEIIELGAVTVENGSVAETYSVLVKTDKKIPEAIIRLTG 157

Query: 59  ---EALENTDVTI----------------VAHNSYFERTVLKACF---NLDIPIHRWICT 96
              E L +                     V HN  F+   +K+      +D    + I T
Sbjct: 158 ITEELLASEGTDKSKALSEFAMRCNGKPLVGHNIGFDLNFIKSACAENKIDFVPSKIIDT 217

Query: 97  LVLAR-SNG-LPSALKAVGEALKLSSQKMEEGKEL 129
           + ++R        +L A+ +   L   K    + L
Sbjct: 218 VKISRKLLDINSYSLAAIADYFDLHYNKDRIHRAL 252


>gi|254259166|ref|ZP_04950220.1| 34L [Burkholderia pseudomallei 1710a]
 gi|254217855|gb|EET07239.1| 34L [Burkholderia pseudomallei 1710a]
          Length = 223

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 55/168 (32%), Gaps = 32/168 (19%)

Query: 33  FAFGFDDHP-VELWDC------VHDPVMPQVLKEALENTDVTIVAHN-SYFERT-VLKAC 83
           F   + D P V   D         D  + + L   L +    +VA N   F+   +    
Sbjct: 3   FCAKWLDDPRVIYHDTSRQRNKEDDRRIVRKLWRLL-DQADIVVAQNGIKFDAKKIQARF 61

Query: 84  FNLDIPI---HRWICTLVLARSNGL--PSALKAVGEAL----KLSSQKMEEGKELIARFC 134
             L +P     + + TLV AR +     + L+ + E L    K        G EL     
Sbjct: 62  LLLGMPPPSPFKVVDTLVEARKHFGFTSNKLEWLTEKLCKKHKKKKHAKFPGFELWRECL 121

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           KG             + EAW    EY   DV    E++  L P     
Sbjct: 122 KG-------------NLEAWAEMKEYNVEDVLSLEELYLVLRPWMQGH 156


>gi|168182135|ref|ZP_02616799.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|237793573|ref|YP_002861125.1| DNA polymerase III subunit epsilon [Clostridium botulinum Ba4 str.
           657]
 gi|182674639|gb|EDT86600.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Bf]
 gi|229262587|gb|ACQ53620.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum Ba4 str. 657]
          Length = 309

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 37/147 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVEL-----------WDCV 48
           M  + IDFET +    + C I     +D  ++          V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGKIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  HDPVMPQVLKEALENTDV-----------TIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
              + P ++K+ LE   +            ++AHN+ F+ +VL+     +N+ +P   +I
Sbjct: 53  IHGIRPHMVKDELEFDKIWEKIKGYFNNNLVIAHNASFDMSVLRSTLKLYNIKMPSFEYI 112

Query: 95  CTLVLA---RSNGLPSALKAVGEALKL 118
           CT+ L+    S+   + L  V   L  
Sbjct: 113 CTMKLSKNFYSSIDNARLNTVNNFLGY 139


>gi|306842001|ref|ZP_07474675.1| ribonuclease D [Brucella sp. BO2]
 gi|306843696|ref|ZP_07476296.1| ribonuclease D [Brucella sp. BO1]
 gi|306276006|gb|EFM57715.1| ribonuclease D [Brucella sp. BO1]
 gi|306287929|gb|EFM59346.1| ribonuclease D [Brucella sp. BO2]
          Length = 385

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      DH   L D +   +        + +  +  V H +  +  ++      +
Sbjct: 37  PELCLIQMASPDHTA-LVDALAPGLDLAPFFRLMADEKIVKVFHAARQDIEIV-FHLG-N 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G          +     QK   GK L     K         R  
Sbjct: 94  LIPSPVFDTQVAAMVCGFG-----DAISYDQLVQK-VTGKHL----DKSSRFTDWRRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            + +        Y   DVT  R+I+  L+    KE    ++++ +
Sbjct: 144 SDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|254718869|ref|ZP_05180680.1| Rnd, ribonuclease D [Brucella sp. 83/13]
 gi|265983854|ref|ZP_06096589.1| ribonuclease D [Brucella sp. 83/13]
 gi|306837628|ref|ZP_07470498.1| ribonuclease D [Brucella sp. NF 2653]
 gi|264662446|gb|EEZ32707.1| ribonuclease D [Brucella sp. 83/13]
 gi|306407277|gb|EFM63486.1| ribonuclease D [Brucella sp. NF 2653]
          Length = 385

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      DH   L D +   +        + +  +  V H +  +  ++      +
Sbjct: 37  PELCLIQMASPDHTA-LVDALAPGLDLAPFFRLMADEKIVKVFHAARQDIEIV-FHLG-N 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G          +     QK   GK L     K         R  
Sbjct: 94  LIPSPVFDTQVAAMVCGFG-----DAISYDQLVQK-VTGKHL----DKSSRFTDWRRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            + +        Y   DVT  R+I+  L+    KE    ++++ +
Sbjct: 144 SDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|157828957|ref|YP_001495199.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933682|ref|YP_001650471.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           Iowa]
 gi|157801438|gb|ABV76691.1| DNA polymerase III subunit epsilon [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908769|gb|ABY73065.1| DNA polymerase III, epsilon chain [Rickettsia rickettsii str. Iowa]
          Length = 229

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 52/190 (27%), Gaps = 36/190 (18%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYAEDVCVILF-AFGFDDHPV 42
             + +D ET                       LT      Y      + F A+       
Sbjct: 5   REIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGISG 64

Query: 43  ELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF------NLD-IPIHR 92
           E        H   +     E + ++ + I  HN+ F+   L          ++  + +  
Sbjct: 65  EFLKDKPLFH--TIADDFLEFISDSKLII--HNAPFDIKFLNHELSLLKRTDIKLLELAN 120

Query: 93  WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPN 149
            I TLV+ARS        L A+ +  K+ +   +    L       E   E +  R    
Sbjct: 121 TIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMGGRQSAF 180

Query: 150 HREAWRLFGE 159
                     
Sbjct: 181 KMVDKSAVIN 190


>gi|290891242|ref|ZP_06554304.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429]
 gi|290479206|gb|EFD87868.1| hypothetical protein AWRIB429_1694 [Oenococcus oeni AWRIB429]
          Length = 177

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 21/139 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LF----AFGFDDHPVELW---DC 47
           M  L +DFET S    +   +      D  +      L     +F + +  +      D 
Sbjct: 1   MNFLAMDFETASSEPWSAVSLGLTIVRDNQIAQNWYSLIKPETSFSYWNTEINGLTADDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           +  P  P+V  +   L +    +V HN  F+  VLK     + L  P +  + T+ L+R 
Sbjct: 61  LDSPKFPEVWADIKNLYDDYPVVVGHNVRFDNNVLKQTLKYYGLKTPRYLSLDTVSLSRK 120

Query: 103 NGLP---SALKAVGEALKL 118
                    L  V   L L
Sbjct: 121 FQPGMVNHKLDTVVSDLGL 139


>gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
 gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacterales bacterium Y4I]
          Length = 469

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 25/140 (17%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVELWDCV---------- 48
            +  D ET   +     + + G  +   +  V    FG    P                 
Sbjct: 277 YVVFDTETTGLLPHKDEIVQIGALRVVRNRIVAGEQFGTLVDPGTPIPAASTKVHGISDA 336

Query: 49  --HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLAR 101
                        A     +D  IVAHN+ F+   L+       +       + T++L+ 
Sbjct: 337 MVQGAPDIGQAARAFHRFASDAVIVAHNAPFDMAFLRRHAKRAGVSWD-QPVLDTVLLSA 395

Query: 102 SN---GLPSALKAVGEALKL 118
                     L A+ E L++
Sbjct: 396 VLFGASQSHTLDALCERLEV 415


>gi|148807575|gb|ABR13588.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 173

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 33/158 (20%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHL 346
              ++++ +     DGR+ G +   GA  TGR +        +P  S             
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP----------- 148

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
                             RS     EG KL+  D  G+
Sbjct: 149 -------------YGRECRSFWCVPEGHKLIGCDARGL 173


>gi|307545330|ref|YP_003897809.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307217354|emb|CBV42624.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
          Length = 682

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 42/140 (30%), Gaps = 26/140 (18%)

Query: 3   TLFIDFETRSP-----IDLTKCGICKYA-------EDVC--------VILFAFGFDD-HP 41
            +  D ET          L   G C+         E           +   +        
Sbjct: 490 IVAFDTETTGLALREGDRLISLGACRIVNGRLLADETFEQHVNPQRPIPSASTAIHGLGD 549

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
            ++ +      +    ++ +      ++AHN+ F+   ++     D      + TL+L+R
Sbjct: 550 QDVENAPTAEQVLPRFRDYV--GSAVLLAHNAAFDMLAIRPGPGTDAFDMPVLDTLLLSR 607

Query: 102 SNGL---PSALKAVGEALKL 118
           +         L ++ +   L
Sbjct: 608 ALDPGLEGHDLDSLAKRYGL 627


>gi|190570587|ref|YP_001974945.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356859|emb|CAQ54230.1| Putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 394

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 54/196 (27%), Gaps = 34/196 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E     +LT            + L    +      + D +   +   ++K+ +
Sbjct: 22  KFIAVDTE-FIRNNLTYY--------PRLSLIQISY-GEKSFIVDVLVPGIDLSLIKKIM 71

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA----RSNGLPSALKAVGEALK 117
            N ++T V H+   +   L               T V A      +              
Sbjct: 72  LNREITKVFHSCRQDIESLLTVL--KCVPTPIFDTQVAAMFCHYYHDF------------ 117

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K+ E  + +A       +     R     +        Y   DV    ++ + L  
Sbjct: 118 IGYSKVVEQYQGVALDKIKAKNSDWLKRPLSEDQLD------YAVNDVIHLYDLHQILCN 171

Query: 178 LSSKEQELWYLDQTIN 193
              +   + +  + + 
Sbjct: 172 KLEENNRMGWFQEEME 187


>gi|116327594|ref|YP_797314.1| ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331795|ref|YP_801513.1| ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120338|gb|ABJ78381.1| Ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125484|gb|ABJ76755.1| Ribonuclease D-related [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 212

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 39/203 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E          G+    +   + +       + V L   + D     +LK   
Sbjct: 29  DRLAVDCE--------MMGLNPRRD--RLCVVQICDSSNNVSLVQILPDQKEAPLLKSLF 78

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           EN ++  + H +  +   L+    + +      CT + ++          +       + 
Sbjct: 79  ENPEIVKIFHFARMDSLFLRYRLGISLE--NVFCTKIASK----------LARTY---TD 123

Query: 122 KMEEGKELIARF-----CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K    K+LI  F      K         +     +       EY  GDV     + ++L 
Sbjct: 124 K-HGLKDLIKEFYDEVIDKKNQSSDWGKKILTKDQI------EYASGDVKYLISLEQKLT 176

Query: 177 PLSSKEQELWYLDQTINDRGYCV 199
            +    +E          R   V
Sbjct: 177 EIL--VREGRDSLAREAFRCLPV 197


>gi|34581277|ref|ZP_00142757.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|229587086|ref|YP_002845587.1| DNA polymerase III subunit epsilon [Rickettsia africae ESF-5]
 gi|238650388|ref|YP_002916240.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
 gi|28262662|gb|EAA26166.1| DNA polymerase III epsilon chain [Rickettsia sibirica 246]
 gi|228022136|gb|ACP53844.1| DNA polymerase III epsilon chain [Rickettsia africae ESF-5]
 gi|238624486|gb|ACR47192.1| DNA polymerase III subunit epsilon [Rickettsia peacockii str.
           Rustic]
          Length = 229

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 52/190 (27%), Gaps = 36/190 (18%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYAEDVCVILF-AFGFDDHPV 42
             + +D ET                       LT      Y      + F A+       
Sbjct: 5   REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGISG 64

Query: 43  ELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF------NLD-IPIHR 92
           E        H   +     E + ++ + I  HN+ F+   L          ++  + +  
Sbjct: 65  EFLKDKPLFH--TIADDFLEFISDSKLII--HNAPFDIKFLNHELSLLKRTDIKLLELAN 120

Query: 93  WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPN 149
            I TLV+ARS        L A+ +  K+ +   +    L       E   E +  R    
Sbjct: 121 TIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMGGRQSAF 180

Query: 150 HREAWRLFGE 159
                     
Sbjct: 181 KMVDKSAVIN 190


>gi|254994696|ref|ZP_05276886.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
          Length = 386

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 60/190 (31%), Gaps = 26/190 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E        +     Y     + L    +      + D + + +    L+E  ++
Sbjct: 28  LAIDTE------FVRSFNDYY---PRLCLLQMAYQGGQ-CVVDVLDERLDLSPLQEIFDD 77

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  V H+   +   L   F           T   +           + E         
Sbjct: 78  EGIYKVFHDCRQDLDALSQRFTRL--PRPIFDTQTAS----------MLCEYH----DNS 121

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
               +L+ +F   + ++ L+ R   +HR        Y   DVT   E+++ L  + + + 
Sbjct: 122 VGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKG 181

Query: 184 ELWYLDQTIN 193
            L +  + + 
Sbjct: 182 RLTWFLEEME 191


>gi|83953718|ref|ZP_00962439.1| ribonuclease D [Sulfitobacter sp. NAS-14.1]
 gi|83841663|gb|EAP80832.1| ribonuclease D [Sulfitobacter sp. NAS-14.1]
          Length = 385

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 54/200 (27%), Gaps = 41/200 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFG---FDDHPVELWDCVHDPVM 53
             + +D E     T                   + L        DD    L D + + + 
Sbjct: 21  DYVTVDTEFLRERTYYS---------------KLCLIQLAMPGTDDSNAVLVDPLSEGLS 65

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
              L     +T V  V H +  +  +     +  +       T V A   G        G
Sbjct: 66  LDPLYTLFRDTSVVKVFHAARQDLEIF--YVDAGVFPEPLFDTQVAAMVCGF-------G 116

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +          + L+ +       +     +      +      Y   DVT  R+I++
Sbjct: 117 EQVGY--------ETLVRKIAHQPLDKTSRFTDWSRRPLSDAQAK-YALADVTHLRQIYE 167

Query: 174 RLEPLSSKEQELWYLDQTIN 193
            L     +     ++ + + 
Sbjct: 168 FLARKLEQTGRARWVQEELE 187


>gi|321462891|gb|EFX73911.1| hypothetical protein DAPPUDRAFT_226991 [Daphnia pulex]
          Length = 1206

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/340 (11%), Positives = 98/340 (28%), Gaps = 45/340 (13%)

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            LP+   S     + +     + ++       I   +++ +    G   V AD+   E   
Sbjct: 796  LPQIVTSGTLTRRAVESTWLTASNAYK--DRIGSELKAMIQCPPGFNFVGADVDSQEL-W 852

Query: 389  LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRA---------IGKVMELAL 439
            +A + G+      F          +               R            K++    
Sbjct: 853  IASIIGD----SFFAGQHGSTAFGWMTLQGKKSDGTDMHSRTAAAVEITRDQAKILNYGR 908

Query: 440  GYQGGAKAFQKMASTT--GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDL 497
             Y  G +  + +       L     +   +   +  +         + ++       +D 
Sbjct: 909  IYGAGERFARTLLMQFNHRLTEKEASEKARKMYSLTKGNSLLKLSHYGRQLASASGNKDE 968

Query: 498  FIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
             +        +   +K   + ++ N       +         +     +  +   +    
Sbjct: 969  LVTLEQLSEMRKNARKEPSLKQIANLPTDELVERRMWAGGTESHMFNKLEEIAQSESPQT 1028

Query: 558  LILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM 614
             +L     R+L  R+VGN                         +VQ+ + D   ++   M
Sbjct: 1029 PVLHCRISRALEPRNVGNEFMTSR----------------VNWVVQSSAVDYLHLMIVAM 1072

Query: 615  ---MNATKAGYDIV-----LTVHDEIVCETPDTDEFNASM 646
               ++  K G  ++     +++HDE+     + D+F A++
Sbjct: 1073 RYLVDVYKLGVVLIEGRFSISIHDEVRYIIKEEDKFRAAL 1112


>gi|294852115|ref|ZP_06792788.1| ribonuclease D [Brucella sp. NVSL 07-0026]
 gi|294820704|gb|EFG37703.1| ribonuclease D [Brucella sp. NVSL 07-0026]
          Length = 385

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      DH   L D +   +        + + ++  V H +  +  ++      +
Sbjct: 37  PELCLIQMASPDHTA-LVDALAPGLDLAPFFRLMADEEIVKVFHAARQDIEIV-FHLG-N 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G          +     QK+           K         R  
Sbjct: 94  LIPSPVFDTQVAAMVCGFG-----DAISYDQLVQKVTSKH-----LDKSSRFTDWRRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            + +        Y   DVT  R+I+  L+    KE    ++++ +
Sbjct: 144 SDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|262212355|gb|ACY35794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 38/141 (26%), Gaps = 10/141 (7%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R    A+ G+ +V ADL+GIE R+LA          A                +   A  
Sbjct: 13  RKLFTATPGQVMVGADLSGIELRMLAHYL-------ARYDEGRYASILLHGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   K +  A  Y  G         +    L+      K     + + DA      
Sbjct: 66  IGISRRQVKTVIYAFLYGAGDSKL---GRSYDPQLSEQQAKKKGKEIRQAYMDAVPGLEK 122

Query: 485 MQENHPEHAIEDLFIGTACER 505
           +       A           R
Sbjct: 123 LVTAVKSKAESGYINLCDSRR 143


>gi|319407879|emb|CBI81531.1| DNA polymerase III epsilon chain [Bartonella schoenbuchensis R1]
          Length = 235

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 28/146 (19%)

Query: 1   MATLFIDFETRS----PIDLTKCG----ICKYA--EDVCVIL--FAFGFDDHPVELWDCV 48
           M  +  D ET         + + G    + +Y       V L        D  V +    
Sbjct: 1   MREIIFDTETTGLDKDSDRIIEIGCVEMVDRYLTKRQFHVYLNPQGVIIPDEVVAIHGLT 60

Query: 49  HD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LD---IPIHRWICT 96
           ++          +     E +     T+VAHN+ F+ + L A    ++   I +   I T
Sbjct: 61  NERLKNEKKFEDIADEFLEFI--DGATMVAHNASFDISFLNAELGRINKPLISVDNVIDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS 120
           L +AR      P++L  + +   + +
Sbjct: 119 LAIARQKFPMGPNSLDVLCKRFGIDN 144


>gi|58584516|ref|YP_198089.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58418832|gb|AAW70847.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 399

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 49/196 (25%), Gaps = 34/196 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             +  D E      +             + L    +      + D +   V    +K+ +
Sbjct: 22  KFIAADTE-----FIRNHLTYY----PRLSLIQISY-GEKSFIVDALAPEVDLSFIKKIM 71

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA----RSNGLPSALKAVGEALK 117
            N ++T V H+   +   L               T V A      +              
Sbjct: 72  LNREITKVFHSCRQDIESL--FTVFKCIPAPIFDTQVAAMFCHYYHDF------------ 117

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K+ E  + +        +     R     +        Y   DV    ++ + L  
Sbjct: 118 IGYSKVVEQYQGVVLDKIKAKNSDWLRRPLSKDQLD------YAISDVVHLYDLHQILCD 171

Query: 178 LSSKEQELWYLDQTIN 193
              +   + +  + + 
Sbjct: 172 RLEESGRMGWFHEEME 187


>gi|229844446|ref|ZP_04464586.1| ribonuclease D [Haemophilus influenzae 6P18H1]
 gi|229812695|gb|EEP48384.1| ribonuclease D [Haemophilus influenzae 6P18H1]
          Length = 399

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 54/194 (27%), Gaps = 38/194 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  Y     + L    +D   V L D        P      L 
Sbjct: 52  VALDTE--------FMRVSTYF--PKLGLIQL-YDGERVSLIDPLAITDFSP--FVALLA 98

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-EALKLS 119
           N  V  + H+   +  V    F  D      I T ++AR  GL   + L  +  + L + 
Sbjct: 99  NPKVLKILHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNIE 156

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K       I R                       +  +Y  GDV     ++  LE   
Sbjct: 157 IDKGATLTNWIKRPLS-------------------DIQLQYAAGDVWYLLPLYHILEKEL 197

Query: 180 SKEQELWYLDQTIN 193
           +K      +     
Sbjct: 198 AKTPWEQAVRDDCE 211


>gi|242008039|ref|XP_002424820.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212508370|gb|EEB12082.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 843

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 70/235 (29%), Gaps = 39/235 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            + +D E    I+L   G         + L   G  +  V ++D V    + +   L   
Sbjct: 400 VVSVDCE---GINLGSKG--------KLTLIQIGTMNGNVYVFDLVTCSNLFEAGGLARL 448

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-----------PSAL 109
           L +  V  V H+   + + +   F   + +     T        +             +L
Sbjct: 449 LTSDQVIKVIHDCRNDSSTI--YFQFGVILRNVFDTKSAHAVIQMQEMGKPVHKVKDVSL 506

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT-VT 168
             + E   L +  M+E  + I +  +         R+             Y   DV  + 
Sbjct: 507 NTLYEIYNLPTNPMKEYFKNIYKKDQKIWGRRPLSRD----------MIVYAAADVLSLV 556

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
             ++  +  +     E   L + + +    V +       +    +     ++L+
Sbjct: 557 PHLYSLMLKIIKP--EYKKLLEELCEEQIYVHIKPIEVKLRKNQRKIETEVKDLK 609


>gi|88705065|ref|ZP_01102777.1| ribonuclease D [Congregibacter litoralis KT71]
 gi|88700760|gb|EAQ97867.1| ribonuclease D [Congregibacter litoralis KT71]
          Length = 370

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/268 (11%), Positives = 71/268 (26%), Gaps = 32/268 (11%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E      + +     +     + L     DD    L D +    +   L+  L
Sbjct: 23  DEIAVDTE-----FMRRNSYYPH-----IALLQLCTDD-HAWLIDPLTISNL-DGLRALL 70

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            ++    V H+   +  V +      +     + T       G    L       +L   
Sbjct: 71  TDSACIKVLHSCSEDLEVFRHWLG--VLPSPLVDTQRATALLGKGFGLGYRALVKELLGV 128

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV-TVTREIFKRLEPLSS 180
           ++++G+       +  +                     Y   DV  +        E    
Sbjct: 129 ELDKGETRSDWLKRPLS----------------ESQCHYAALDVLELVPAWRILRELAEE 172

Query: 181 KEQELWYLDQTINDRGYCVDVA-LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           + +  W LD+         D     +   +       +  + L  L       +R ++K 
Sbjct: 173 QGRMQWVLDEGEEAIRLLKDRDGQIYRRVKSASRLSRRQLEALRRLCEWREDLARAVDKP 232

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNK 267
           + W+  +       +        L+   
Sbjct: 233 RGWIVEDKAFLAIAMAIPEDHDALAELD 260


>gi|300214810|gb|ADJ79226.1| DNA-directed DNA polymerase III, epsilon chain [Lactobacillus
           salivarius CECT 5713]
          Length = 177

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVIL---FAFGFDDHPVELWDCVHD 50
           M  + IDFET      S   L    +     A+    ++     F + +  V        
Sbjct: 1   MNFVAIDFETANPKRYSACSLALTVVKNNLIADQFYSLIKPDTDFSWRNIQVHGITEKQV 60

Query: 51  PVMPQ--VLKEALEN---TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
              P    L   ++N    +  IVAHN+ F+ +VL      +++ +P ++ + TL  ++ 
Sbjct: 61  QNAPSFPELWPHIQNFFTPNNLIVAHNASFDSSVLLRTLEHYDITLPHYQLLDTLRTSKK 120

Query: 103 N---GLPSALKAVGEALKLS 119
                    L  +   L + 
Sbjct: 121 FFKDFENHKLDTICNNLNID 140


>gi|189501595|ref|YP_001957312.1| hypothetical protein Aasi_0137 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497036|gb|ACE05583.1| conserved hypothetical protein [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 241

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 64/236 (27%), Gaps = 73/236 (30%)

Query: 2   ATLFIDFETR------------------------SPIDLTKCG------ICKYAEDVCVI 31
             LFID ET                            D  + G         YAE   VI
Sbjct: 9   NILFIDIETVPCVADYENLTAPQKLLWGKKATLLGATDTQEIGNLFSERAGVYAEFGKVI 68

Query: 32  LFA-----FGFDDHP---VELWDCVHDPVMPQVLKEALEN----TDVTIVAHNSY-FERT 78
           +       F     P   V+     ++  +   L+  LE      ++ + AHN   F+  
Sbjct: 69  VIGLGHITFDICGDPSLQVQALSSHNEKELLGQLRNILEEKYQQENIRLCAHNGKEFDFP 128

Query: 79  VLKACF---NLDIPI-------HRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQK 122
            L        + +P          W      T+ + R     S  +L  +     ++S K
Sbjct: 129 YLCRRMLVNGISLPTVLDCAGKKPWEVTHLDTMEMWRFGDRKSFTSLDLLANLFGVNSSK 188

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                            +                  +YC  DV VT +IF +L   
Sbjct: 189 --------------TLMDGSEVSYFYYVENDLTRIAKYCMQDVIVTSQIFLKLNNW 230


>gi|213019164|ref|ZP_03334971.1| putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995273|gb|EEB55914.1| putative ribonuclease D [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 378

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 54/196 (27%), Gaps = 34/196 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E     +LT            + L    +      + D +   +   ++K+ +
Sbjct: 6   KFIAVDTE-FIRNNLTYY--------PRLSLIQISY-GEKSFIVDVLVPGIDLSLIKKIM 55

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA----RSNGLPSALKAVGEALK 117
            N ++T V H+   +   L               T V A      +              
Sbjct: 56  LNREITKVFHSCRQDIESLLTVL--KCVPTPIFDTQVAAMFCHYYHDF------------ 101

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K+ E  + +A       +     R     +        Y   DV    ++ + L  
Sbjct: 102 IGYSKVVEQYQGVALDKIKAKNSDWLKRPLSEDQLD------YAVNDVIHLYDLHQILCN 155

Query: 178 LSSKEQELWYLDQTIN 193
              +   + +  + + 
Sbjct: 156 KLEENNRMGWFQEEME 171


>gi|254689015|ref|ZP_05152269.1| Rnd, ribonuclease D [Brucella abortus bv. 6 str. 870]
 gi|260754508|ref|ZP_05866856.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
 gi|260674616|gb|EEX61437.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
          Length = 384

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      DH   L D +   +        + + ++  V H +  +  ++      +
Sbjct: 37  PELCLIQMASPDHTA-LVDALAPGLDLAPFFRLMADEEIVKVFHAARQDIEIV-FHLG-N 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G          +     QK   GK L     K         R  
Sbjct: 94  LIPSPVFDTQVAAMVCGFG-----DAISYDQLVQK-VTGKHL----DKSSRFTDWRRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            + +        Y   DVT  R+I+  L+    KE    ++++ +
Sbjct: 144 SDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|15893035|ref|NP_360749.1| DNA polymerase III subunit epsilon [Rickettsia conorii str. Malish
           7]
 gi|20137858|sp|Q92GL1|DPO3E_RICCN RecName: Full=DNA polymerase III subunit epsilon
 gi|15620236|gb|AAL03650.1| DNA polymerase III epsilon chain [Rickettsia conorii str. Malish 7]
          Length = 230

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 52/190 (27%), Gaps = 36/190 (18%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYAEDVCVILF-AFGFDDHPV 42
             + +D ET                       LT      Y      + F A+       
Sbjct: 5   REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGISG 64

Query: 43  ELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF------NLD-IPIHR 92
           E        H   +     E + ++ + I  HN+ F+   L          ++  + +  
Sbjct: 65  EFLKDKPLFH--TIADDFLEFISDSKLII--HNAPFDIKFLNHELSLLKRTDIKLLELAN 120

Query: 93  WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPN 149
            I TLV+ARS        L A+ +  K+ +   +    L       E   E +  R    
Sbjct: 121 TIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMGGRQSAF 180

Query: 150 HREAWRLFGE 159
                     
Sbjct: 181 KMVDKSAVIN 190


>gi|255264769|ref|ZP_05344111.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62]
 gi|255107104|gb|EET49778.1| DNA polymerase III, epsilon subunit [Thalassiobium sp. R2A62]
          Length = 231

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 49/178 (27%), Gaps = 33/178 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--- 57
           M  + +D ET            +  E   V L                    MP+     
Sbjct: 1   MREIVLDTETTGFEPNEG---DRIVEIGAVELLNH-VPTGRTYHQYINPKRSMPKEAFEV 56

Query: 58  ----------KEALEN---TDVTIVA------HNSYFERTVLKACFNLD----IPIHRWI 94
                     K    +     V  V       HN+ F+   L A         +P+ + +
Sbjct: 57  HGLGDDFLRDKPFFADIAQAFVDFVGTDKMIIHNAAFDMKFLNAELGWVNRPLLPMDQAL 116

Query: 95  CTLVLARSN--GLPSALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPN 149
            TL +AR    G P++L A+     + +      G  L +        E +  R    
Sbjct: 117 DTLAIARRRFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELIGGRQPDF 174


>gi|229472219|gb|ACQ72624.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 9/143 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  AEFRRLFKASPGQIMVGADLSGIELRMLAHYL-------ARYDEGRYADVLLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF-QKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           A      R   K +  A  Y  G     +   +    +           +  +     E 
Sbjct: 63  ADKIGISRRQVKTVTYAFLYGAGDAKLGKSYDAQLSESQAKKKGKEIRQAYMDAVPGLEK 122

Query: 481 FCRWMQENHPEHAIEDLFIGTAC 503
               ++    E    +L  G  C
Sbjct: 123 LVTAVKSKA-ESGFINLCDGRRC 144


>gi|168215255|ref|ZP_02640880.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|168216790|ref|ZP_02642415.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
 gi|170713347|gb|EDT25529.1| exonuclease family protein [Clostridium perfringens CPE str. F4969]
 gi|182381117|gb|EDT78596.1| exonuclease family protein [Clostridium perfringens NCTC 8239]
          Length = 302

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 25/151 (16%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDP 51
           M  + IDFET          I LT     K  E+    +      F    + +     + 
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
                    + + +K+ +      ++AHN+ F+ +VL+     +++  P   + CT+V+A
Sbjct: 61  VENERTFNEIWEEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 101 ---RSNGLPSALKAVGEALKLSSQKMEEGKE 128
                +     L  V EAL         G++
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFEFSHHHAGED 149


>gi|110799993|ref|YP_696096.1| DNA polymerase III subunit epsilon [Clostridium perfringens ATCC
           13124]
 gi|168209994|ref|ZP_02635619.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110674640|gb|ABG83627.1| exonuclease family protein [Clostridium perfringens ATCC 13124]
 gi|170711840|gb|EDT24022.1| exonuclease family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 302

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 25/151 (16%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDP 51
           M  + IDFET          I LT     K  E+    +      F    + +     + 
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
                    + + +K+ +      ++AHN+ F+ +VL+     +++  P   + CT+V+A
Sbjct: 61  VENERTFNEIWEEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 101 ---RSNGLPSALKAVGEALKLSSQKMEEGKE 128
                +     L  V EAL         G++
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFEFSHHHAGED 149


>gi|74187922|dbj|BAE37100.1| unnamed protein product [Mus musculus]
          Length = 497

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 26/177 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIVDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSSQKMEEGKELIA 131
             +   L+  F   + +     T   AR   L   +L  +      + S K  +  +   
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADW-- 424

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
                        R  P           Y + D      I+ R+     +      +
Sbjct: 425 -----------RIRPLP------EEMLSYARDDTHYLLYIYDRMRLELWERGNHQPV 464


>gi|254461790|ref|ZP_05075206.1| ribonuclease D [Rhodobacterales bacterium HTCC2083]
 gi|206678379|gb|EDZ42866.1| ribonuclease D [Rhodobacteraceae bacterium HTCC2083]
          Length = 385

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 41/198 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFG---FDDHPVELWDCVHDPVMP 54
            + +D E     T                   + L        DD    L D + + +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAMPGTDDSNGCLVDPLVEGISL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L +   +T V  V H +  +  + +      +       T V +   G        GE
Sbjct: 67  EPLYDLFRDTSVVKVFHAARQDIEIFQVDAG--VIPTPLFDTQVASMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ +  K E  +     +      +      Y   DVT  R++++ 
Sbjct: 118 QVGY--------ETLVRKIAKQEIDKSSRFTDWSRRPLSDAQAK-YALADVTHLRQVYEF 168

Query: 175 LEPLSSKEQELWYLDQTI 192
           L      +    ++D+ +
Sbjct: 169 LAKKLKDQGRSHWVDEEM 186


>gi|161618719|ref|YP_001592606.1| ribonuclease D [Brucella canis ATCC 23365]
 gi|260566676|ref|ZP_05837146.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161335530|gb|ABX61835.1| ribonuclease D [Brucella canis ATCC 23365]
 gi|260156194|gb|EEW91274.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 382

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      DH   L D +   +        + + ++  V H +  +  ++      +
Sbjct: 37  PELCLIQMASPDHTA-LVDALAPGLDLAPFFRLMADEEIVKVFHAARQDIEIV-FHLG-N 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G          +     QK   GK L     K         R  
Sbjct: 94  LIPSPVFDTQVAAMVCGFG-----DAISYDQLVQK-VTGKHL----DKSSRFTDWRRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            + +        Y   DVT  R+I+  L+    KE    ++++ +
Sbjct: 144 SDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|62289703|ref|YP_221496.1| RND, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
 gi|148560669|ref|YP_001258731.1| ribonuclease D [Brucella ovis ATCC 25840]
 gi|163843022|ref|YP_001627426.1| ribonuclease D [Brucella suis ATCC 23445]
 gi|189023953|ref|YP_001934721.1| Rnd, ribonuclease D [Brucella abortus S19]
 gi|225627251|ref|ZP_03785288.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|237815192|ref|ZP_04594190.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|254693498|ref|ZP_05155326.1| Rnd, ribonuclease D [Brucella abortus bv. 3 str. Tulya]
 gi|254697150|ref|ZP_05158978.1| Rnd, ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701527|ref|ZP_05163355.1| Rnd, ribonuclease D [Brucella suis bv. 5 str. 513]
 gi|254707023|ref|ZP_05168851.1| Rnd, ribonuclease D [Brucella pinnipedialis M163/99/10]
 gi|254709868|ref|ZP_05171679.1| Rnd, ribonuclease D [Brucella pinnipedialis B2/94]
 gi|254713869|ref|ZP_05175680.1| Rnd, ribonuclease D [Brucella ceti M644/93/1]
 gi|254717074|ref|ZP_05178885.1| Rnd, ribonuclease D [Brucella ceti M13/05/1]
 gi|254730046|ref|ZP_05188624.1| Rnd, ribonuclease D [Brucella abortus bv. 4 str. 292]
 gi|256031360|ref|ZP_05444974.1| Rnd, ribonuclease D [Brucella pinnipedialis M292/94/1]
 gi|256060870|ref|ZP_05451030.1| Rnd, ribonuclease D [Brucella neotomae 5K33]
 gi|256257265|ref|ZP_05462801.1| Rnd, ribonuclease D [Brucella abortus bv. 9 str. C68]
 gi|256369183|ref|YP_003106691.1| ribonuclease D [Brucella microti CCM 4915]
 gi|260168494|ref|ZP_05755305.1| ribonuclease D [Brucella sp. F5/99]
 gi|260545541|ref|ZP_05821282.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260757729|ref|ZP_05870077.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
 gi|260761554|ref|ZP_05873897.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883537|ref|ZP_05895151.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
 gi|261213756|ref|ZP_05928037.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
 gi|261218885|ref|ZP_05933166.1| ribonuclease D [Brucella ceti M13/05/1]
 gi|261314491|ref|ZP_05953688.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
 gi|261317409|ref|ZP_05956606.1| ribonuclease D [Brucella pinnipedialis B2/94]
 gi|261321616|ref|ZP_05960813.1| ribonuclease D [Brucella ceti M644/93/1]
 gi|261324867|ref|ZP_05964064.1| ribonuclease D [Brucella neotomae 5K33]
 gi|261752075|ref|ZP_05995784.1| ribonuclease D [Brucella suis bv. 5 str. 513]
 gi|261757962|ref|ZP_06001671.1| ribonuclease D [Brucella sp. F5/99]
 gi|265988446|ref|ZP_06101003.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
 gi|297248110|ref|ZP_06931828.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
 gi|62195835|gb|AAX74135.1| Rnd, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
 gi|148371926|gb|ABQ61905.1| ribonuclease D [Brucella ovis ATCC 25840]
 gi|163673745|gb|ABY37856.1| ribonuclease D [Brucella suis ATCC 23445]
 gi|189019525|gb|ACD72247.1| Rnd, ribonuclease D [Brucella abortus S19]
 gi|225617256|gb|EEH14301.1| ribonuclease D [Brucella ceti str. Cudo]
 gi|237790029|gb|EEP64239.1| ribonuclease D [Brucella abortus str. 2308 A]
 gi|255999343|gb|ACU47742.1| ribonuclease D [Brucella microti CCM 4915]
 gi|260096948|gb|EEW80823.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260668047|gb|EEX54987.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
 gi|260671986|gb|EEX58807.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
 gi|260873065|gb|EEX80134.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
 gi|260915363|gb|EEX82224.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
 gi|260923974|gb|EEX90542.1| ribonuclease D [Brucella ceti M13/05/1]
 gi|261294306|gb|EEX97802.1| ribonuclease D [Brucella ceti M644/93/1]
 gi|261296632|gb|EEY00129.1| ribonuclease D [Brucella pinnipedialis B2/94]
 gi|261300847|gb|EEY04344.1| ribonuclease D [Brucella neotomae 5K33]
 gi|261303517|gb|EEY07014.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
 gi|261737946|gb|EEY25942.1| ribonuclease D [Brucella sp. F5/99]
 gi|261741828|gb|EEY29754.1| ribonuclease D [Brucella suis bv. 5 str. 513]
 gi|264660643|gb|EEZ30904.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
 gi|297175279|gb|EFH34626.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
          Length = 385

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      DH   L D +   +        + + ++  V H +  +  ++      +
Sbjct: 37  PELCLIQMASPDHTA-LVDALAPGLDLAPFFRLMADEEIVKVFHAARQDIEIV-FHLG-N 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G          +     QK   GK L     K         R  
Sbjct: 94  LIPSPVFDTQVAAMVCGFG-----DAISYDQLVQK-VTGKHL----DKSSRFTDWRRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            + +        Y   DVT  R+I+  L+    KE    ++++ +
Sbjct: 144 SDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|84687040|ref|ZP_01014923.1| ribonuclease D [Maritimibacter alkaliphilus HTCC2654]
 gi|84665014|gb|EAQ11495.1| ribonuclease D [Rhodobacterales bacterium HTCC2654]
          Length = 387

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 73/293 (24%), Gaps = 51/293 (17%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF----DDHPVELWDCVHDPVM 53
            + +D E     T                   + L         D+    L D + D + 
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAVMGDDDEVDAVLVDPLADGLS 66

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + L E   +  V  V H +  +  +     +  +       T V A   G         
Sbjct: 67  LEPLYELFRDEGVVKVFHAARQDLEIF--YVDAGLIPSPLFDTQVAAMVCGFG----DQA 120

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                        + L+ +  K +  +     +            +Y  GDVT  R I++
Sbjct: 121 GY-----------ETLVRKIAKAQLDKSSRFTDWSRRPLTDAQ-KKYAIGDVTHLRVIYE 168

Query: 174 RLEPLSSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVE-----RTKLDQELES 224
            L+    +    +     L    +   Y VD   A    +            +       
Sbjct: 169 FLKAQLEETGRAKWVKEELSVLTDPDTYTVDPDEAWKRVKTRTNSARFLAIVRELARFRE 228

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
                 +  R        L        +D+ E    R+L    +    A  + 
Sbjct: 229 TYAQERNIPRSRVYKDDALMELASTKPKDMGELGRSRLLLREARKGEVAEGIL 281


>gi|89067418|ref|ZP_01154931.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola granulosus HTCC2516]
 gi|89046987|gb|EAR53041.1| putative DNA polymerase III, epsilon subunit and related
           3'-5'exonuclease [Oceanicola granulosus HTCC2516]
          Length = 230

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 52/184 (28%), Gaps = 43/184 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDD----HPVELWDCVHDPVMPQ 55
           M  + +D ET         G      D  ++   A   D+                 MP+
Sbjct: 1   MREIVLDTETT--------GFDPEDGD-RIVEIGAVELDNHMPTGRTYHQYINPQRAMPR 51

Query: 56  VLKEA-------LENT---------------DVTIVAHNSYFERTVLKACFNL----DIP 89
              E        L +                D  +V HN+ F+   L A         +P
Sbjct: 52  EAFEVHGLGDEFLADKPVFARIGRAFLDFVGDARLVIHNASFDMKFLNAELGWANLPRLP 111

Query: 90  IHRWICT--LVLARSNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
             + + T  +  ++  G P +L A+     + +  +   G  L +        E +  R 
Sbjct: 112 DSQALDTVAMARSKFPGSPVSLDALCRRFGIDNSARTYHGALLDSEILAEVYLELIGGRQ 171

Query: 147 KPNH 150
               
Sbjct: 172 PDFA 175


>gi|254786713|ref|YP_003074142.1| ribonuclease D [Teredinibacter turnerae T7901]
 gi|237686111|gb|ACR13375.1| ribonuclease D [Teredinibacter turnerae T7901]
          Length = 393

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 69/273 (25%), Gaps = 44/273 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEA 60
             L +D E      +               L     D +   L D    D   P  L E 
Sbjct: 30  RMLAVDTE-----FMRSQTYYPITG-----LIQVN-DGNTSYLIDPLAFDDFTP--LAEL 76

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           +EN  V  V H+   +  V      +       + T + +   G              S 
Sbjct: 77  MENPGVLKVLHSCSEDLEVFHRFLGIV--PKHMLDTQIASALCG-----------YGFSV 123

Query: 121 QKMEEGKE-LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
              +     L     K ET      R   + +        Y   DV    ++   L    
Sbjct: 124 GFGKLVHAVLGEELPKEETRSDWLHRPLSSAQID------YAAIDVEYLYKLASILVLKL 177

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
                L ++ +        +    A               ++   L+   ++  + L + 
Sbjct: 178 KNLGRLTWVAEDCE----AMLRQFADNQAVDNS---DARIKQAWRLSQRQLAILKKLAQW 230

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
           +  +     +    + +   +  L    + TP 
Sbjct: 231 REEVAQRRDVPRNRVIK---EHSLLDLAQRTPD 260


>gi|149185091|ref|ZP_01863408.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21]
 gi|148831202|gb|EDL49636.1| ribonuclease D 3'-5' exonuclease [Erythrobacter sp. SD-21]
          Length = 207

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 46/181 (25%), Gaps = 34/181 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALE 62
           + +D ET   + +             + +      +    L     D       LK  L 
Sbjct: 20  VAVDTETMGLVTIRD----------RLCVVQISDGNGDEHLVRFGPDSDYDAPNLKAVLG 69

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           + +   + H + F+   ++    +        CT + ++          LK + E L   
Sbjct: 70  DPERLKLFHFARFDLAAIEYYLGVTAAP--CYCTKIASKMVRTFTDRHGLKNLVEEL--- 124

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +                     +Y   DV     + + L+   
Sbjct: 125 ---------LGESMSKAQQSSDWGG------PVLNDAQRDYAASDVRFLHRMKEELDRRL 169

Query: 180 S 180
            
Sbjct: 170 E 170


>gi|127513115|ref|YP_001094312.1| ribonuclease D [Shewanella loihica PV-4]
 gi|126638410|gb|ABO24053.1| ribonuclease D [Shewanella loihica PV-4]
          Length = 368

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 51/201 (25%), Gaps = 40/201 (19%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L +D E     T       K G+ +  +   + L        PV + D          
Sbjct: 23  KVLMLDTEFVRTRTYY----AKLGLIQVYDGETLALI------DPVAVSDLSA------- 65

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               LE  D+  V H+   +  VL               + + A   G    +       
Sbjct: 66  FWALLERDDMISVLHSCSEDLEVLARYG--RCQPKVLFDSQIAAAFCGWGHGM------- 116

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                    G   +   C G   +    R     R       +Y   DV     ++ +L 
Sbjct: 117 ---------GYAKLVEHCLGVQLDKGESRTDWMKRPLSDAQLQYAANDVDYLYRLYPQLL 167

Query: 177 PLSSKEQELWYLDQTINDRGY 197
               +   + +L +       
Sbjct: 168 EKLQESGRMPWLLEEGERMTQ 188


>gi|1297340|gb|AAA98977.1| DNA polymerase gamma [Mus musculus]
          Length = 1238

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/404 (12%), Positives = 106/404 (26%), Gaps = 56/404 (13%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L  +       R   +       G +   +   Q + 
Sbjct: 771  EINKMISFWRNAHKRISSQMVVWLPRSALP----RVVTRHPAFDEEGHYGAILP--QVVT 824

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V A  G  LV AD+   E   +A
Sbjct: 825  AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPTGYVLVGADVDSQEL-WIA 877

Query: 391  WMAGEQWK-----LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
             + G+          AF         +     +   A   +  R   K+      Y  G 
Sbjct: 878  AVLGDAHLAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVRIHREHAKIFNYGRIYGAGQ 937

Query: 446  KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA--- 502
               +++       L       K        +    +            +      T    
Sbjct: 938  SFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTEDGW 997

Query: 503  --CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
               + ++   R+        W +   A E+    G       + +   +        L  
Sbjct: 998  VSLQDLRMIRREASR--KSRWKKWEVASERAWTGGTESEMFNKLESIAMSDTPRTPVLGC 1055

Query: 561  MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA 617
             +   R+L    V                           +VQ+ + D   ++   M   
Sbjct: 1056 CIS--RALEPSVVQGEFITSR----------------VNWVVQSSAVDYLHLMLVAMKWL 1097

Query: 618  TKAGY---DIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
             +         +++HDE+     + D + A+       +L   M
Sbjct: 1098 FEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCM 1141


>gi|82699633|ref|YP_414207.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|82615734|emb|CAJ10730.1| HRDC domain:3'-5' exonuclease:Ribonuclease D [Brucella melitensis
           biovar Abortus 2308]
          Length = 385

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      DH   + +      +       + + ++  V H +  +  ++      +
Sbjct: 37  PELCLIQMASPDHTALVDELAPGLDL-APFFRLMADEEIVKVFHAARQDIEIV-FHLG-N 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G          +     QK   GK L     K         R  
Sbjct: 94  LIPSPVFDTQVAAMVCGFG-----DAISYDQLVQK-VTGKHL----DKSSRFTDWRRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            + +        Y   DVT  R+I+  L+    KE    ++++ +
Sbjct: 144 SDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 406

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 14/97 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E              Y     V L      +    L D +        L    
Sbjct: 27  KIMSIDTE----------SSGYYTYYPKVCLIQIN-SNGKNYLIDPLKI-TNLSALGPLF 74

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           E+ ++  + H++  +   LK  F           T++
Sbjct: 75  EDPNILKIFHSAQDDIKALKRDFGF--KFVNTADTMI 109


>gi|296282123|ref|ZP_06860121.1| 3'-5' exonuclease [Citromicrobium bathyomarinum JL354]
          Length = 205

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 42/177 (23%), Gaps = 28/177 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALE 62
           + +D ET          +        + L           L     D       LK  L 
Sbjct: 20  VAVDTET----------MGLITRRDRLCLVQISDGKGDEHLVRFGVDSSFDAPNLKAVLA 69

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +   T + H   F+   ++    +        CT + ++                L   K
Sbjct: 70  DPARTKLYHFGRFDLAAIEYWLGVTAAP--VFCTKIASKL---TRTYTD---RHGL---K 118

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           M   + L     K +           + +       EY   DV     +    E   
Sbjct: 119 MLVSELLGEDISKQQQSSDWGAPKINDAQ------REYAASDVRYLHRLRDIFEERL 169


>gi|209517197|ref|ZP_03266042.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209502333|gb|EEA02344.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 244

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 53/188 (28%), Gaps = 36/188 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  L +D ET         G  +  E  CV L                       A    
Sbjct: 1   MRQLILDTETTGLNP---RGGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E   D      +    ++ +++ D+ I  HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLSDKPKFAEIIDQFRDFIQDADLII--HNAPFDIGFLDTEFALLGLPPVSTYCG 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TL  A+        +L A+ +   +S+        L+      E +  +    +  
Sbjct: 116 EIIDTLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESL 175

Query: 150 HREAWRLF 157
             +     
Sbjct: 176 VIDMLGEA 183


>gi|196007028|ref|XP_002113380.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
 gi|190583784|gb|EDV23854.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
          Length = 535

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 50/191 (26%), Gaps = 24/191 (12%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69
           T   +DL       Y     V L      D    + D +        L E   +  +  +
Sbjct: 259 TEFAVDLEHHSYRSY--QGFVCLMQISTRDAD-YIVDTLALRSELWTLNEVFSDPKIIKI 315

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKE 128
            H +  +   L+   +  I +     T   AR    P  +L  +              K 
Sbjct: 316 LHGADSDIIWLQR--DFAIYVVNMFDTGQAARLLQFPRFSLSYL------------LLKY 361

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
                 KG        R  P      +   +Y + D      IF  L            L
Sbjct: 362 CNVTANKGLQLADWRIRPLP------QEMVQYAREDTHYLLYIFDVLTNELMNASTSVDL 415

Query: 189 DQTINDRGYCV 199
            ++  DR   +
Sbjct: 416 LKSNFDRSKKI 426


>gi|23501637|ref|NP_697764.1| ribonuclease D [Brucella suis 1330]
 gi|254704076|ref|ZP_05165904.1| ribonuclease D [Brucella suis bv. 3 str. 686]
 gi|261754734|ref|ZP_05998443.1| ribonuclease D [Brucella suis bv. 3 str. 686]
 gi|23347555|gb|AAN29679.1| ribonuclease D [Brucella suis 1330]
 gi|261744487|gb|EEY32413.1| ribonuclease D [Brucella suis bv. 3 str. 686]
          Length = 385

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      DH   L D +   +        + + ++  V H +  +  ++      +
Sbjct: 37  PELCLIQMASPDHTA-LVDALAPGLDLAPFFRLMADEEIVKVFHAARQDIEIV-FHLG-N 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G          +     QK   GK L     K         R  
Sbjct: 94  LIPSPVFDTQVAAMVCGFG-----DAISYDQLVQK-VTGKHL----DKSSRFTDWRRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            + +        Y   DVT  R+I+  L+    KE    ++++ +
Sbjct: 144 SDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEM 182


>gi|145632638|ref|ZP_01788372.1| ribonuclease D [Haemophilus influenzae 3655]
 gi|144986833|gb|EDJ93385.1| ribonuclease D [Haemophilus influenzae 3655]
 gi|309972450|gb|ADO95651.1| Ribonuclease D [Haemophilus influenzae R2846]
          Length = 380

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 95/328 (28%), Gaps = 64/328 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  Y     + L    +D   V L D        P      L 
Sbjct: 33  VALDTE--------FMRVSTYF--PKLGLIQL-YDGERVSLIDPLAITDFSP--FIALLA 79

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--LKAVG-EALKLS 119
           N  V  + H+   +  V    F  D   H  I T ++AR  GL ++  L  +  + L + 
Sbjct: 80  NPKVLKILHSCSEDLLVFLQEF--DQLPHPMIDTQIMARFIGLGASAGLAKLAQQYLNIE 137

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K       I R                       +  +Y  GDV     ++  LE   
Sbjct: 138 IDKGATRTNWIKRPLS-------------------DIQLQYAAGDVWYLLPLYHILEKEL 178

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           +K      +                H L +    +          L    +S  R L + 
Sbjct: 179 AKTPWEQAVRDDCELALSK-----THKLQERDSEKAYLDIPNAWKLNSLELSRLRILSQW 233

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA------------------IQVFNNRM 281
           +  + +E  L L  + ++     L    K  P+                    ++     
Sbjct: 234 RQNVAIERDLALSYIVKS---EHLWKVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLS 290

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
           +A R +       +E ++ D R + T+Q
Sbjct: 291 QARRISSNDYPEPIERISEDPRYKKTIQ 318


>gi|303232226|ref|ZP_07318925.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
 gi|302481636|gb|EFL44697.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
          Length = 437

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 65/270 (24%), Gaps = 45/270 (16%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + ID E     T                   + L           +            L 
Sbjct: 83  VAIDTEFIREKTYY---------------PQLCLIQMATHTQSAVVDPLACSS--LCDLA 125

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             LE+  +  V      +  VL     L +         + A   G    L        +
Sbjct: 126 CLLEDKSIIKVFFACSQDIEVL--YDALGVVPKNVFDAQLAAAFLGYRYQLGYGALVEAM 183

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
               + + + L     +  T                    +Y   DV    +++  L   
Sbjct: 184 VGVHLPKTQALTDWSLRPLT----------------EEQLKYAADDVIYQPQMYTLLVRE 227

Query: 179 S----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                        + QT++D     D A A    + V+    K     + +       +R
Sbjct: 228 LTRTNRYAWFTHEMKQTLDDMLQRRDPAQAFRHIKRVNNLTRKQLAIAKEVALWRDDVAR 287

Query: 235 CLE-KLKTWLFLETGLHLEDLTETTCQRVL 263
                 K  L  E  + L  L  TT  R L
Sbjct: 288 GRNVPRKWILSDEVVIELCKLAPTTKNRAL 317


>gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 524

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 56/220 (25%), Gaps = 34/220 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LKE  ++     V H +  +   L+   +  + +     T   +R   +           
Sbjct: 30  LKEIFKDPTKRKVMHGADRDIMWLQR--DFRVYVCNLFDTGQASRVLQMERN-------- 79

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRL 175
                     + L+  FC          +N             +Y + D      I+  +
Sbjct: 80  --------SLEHLLHHFC--GVTANKIYQNADWRSRPLSDEMIKYAREDTHYLLYIYDLM 129

Query: 176 EPLSSKE-QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                +E      L   +  R   + + L                 +   LT   ++   
Sbjct: 130 RLRLQRESTSENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQEHELTAAQLAVVS 189

Query: 235 CLEKLKTWLFLETG------------LHLEDLTETTCQRV 262
            L + + ++  +              + +     TT   +
Sbjct: 190 ALHQWRDYIARDQDESTGYVLPNKALIEIAKKMPTTTADL 229


>gi|195026828|ref|XP_001986344.1| GH20576 [Drosophila grimshawi]
 gi|193902344|gb|EDW01211.1| GH20576 [Drosophila grimshawi]
          Length = 995

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 50/177 (28%), Gaps = 36/177 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEAL 61
           + +D E    I+L   G         + L   G       L+D    P M     LK  L
Sbjct: 546 VSLDCE---GINLGVKG--------EITLIEIGTARGEAFLFDVQTCPAMVSDGGLKTLL 594

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-----------ALK 110
           E+  V  V H+   +   L   F + +       T                      +L 
Sbjct: 595 EHDQVIKVIHDCRNDAVNLYQQFGILLR--NVFDTQAAHAILQYQENGKQVYKAKYISLN 652

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           ++ E        +++  + I R  +    +    R              Y  GDV V
Sbjct: 653 SLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTR----------EMMLYAAGDVLV 699


>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
 gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 1468

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 37/150 (24%)

Query: 2   ATLFIDFETRSPID-----------LTKCGICKYAEDV-------------CVILFAFGF 37
             +  D ET                + + GI                     +   +   
Sbjct: 409 KFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKHQFFIKPTGKIPPAITKITGISQKM 468

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP---IHRWI 94
            D     W+        + + + ++++   +VAHN+ F+ + L+  F         +  I
Sbjct: 469 IDETAISWEIA-----LEKITKIIKDS--VLVAHNAAFDFSFLEQFFRQKAKKSLKNPII 521

Query: 95  CTLVLARSNGL---PSALKAVGEALKLSSQ 121
            TL ++R         +LK V +  ++   
Sbjct: 522 DTLEVSRFLNPNEKSHSLKNVAKRYEIEYD 551


>gi|262212403|gb|ACY35818.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 66/275 (24%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVAYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++      G + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIGANQLAFIHDE 193


>gi|86153106|ref|ZP_01071311.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613680|ref|YP_001000809.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85843991|gb|EAQ61201.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249133|gb|EAQ72094.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 264

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 46/201 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 79  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 138

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 139 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 188

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD----QTINDRG 196
                    +        EYC+ DV  T  +F + E + +   E  Y+D         R 
Sbjct: 189 --------FYENELEKIYEYCESDVLNTYMLFLKYELIKANVSEEDYVDFLSYMRDFLRE 240

Query: 197 YCVDVALAHTLNQIVDVERTK 217
              D +      +  + E +K
Sbjct: 241 KKSDRSYTEVFAKACESEISK 261


>gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 592

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 56/220 (25%), Gaps = 34/220 (15%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LKE  ++     V H +  +   L+   +  + +     T   +R   +           
Sbjct: 98  LKEIFKDPTKRKVMHGADRDIMWLQR--DFRVYVCNLFDTGQASRVLQMERN-------- 147

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRL 175
                     + L+  FC          +N             +Y + D      I+  +
Sbjct: 148 --------SLEHLLHHFC--GVTANKIYQNADWRSRPLSDEMIKYAREDTHYLLYIYDLM 197

Query: 176 EPLSSKE-QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                +E      L   +  R   + + L                 +   LT   ++   
Sbjct: 198 RLRLQRESTSENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQEHELTAAQLAVVS 257

Query: 235 CLEKLKTWLFLETG------------LHLEDLTETTCQRV 262
            L + + ++  +              + +     TT   +
Sbjct: 258 ALHQWRDYIARDQDESTGYVLPNKALIEIAKKMPTTTADL 297


>gi|262342279|gb|ACY54650.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 65/275 (23%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  VHDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|195437646|ref|XP_002066751.1| GK24652 [Drosophila willistoni]
 gi|194162836|gb|EDW77737.1| GK24652 [Drosophila willistoni]
          Length = 1162

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 82/296 (27%), Gaps = 33/296 (11%)

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET----GEDLYVTTY 413
              +   +R+ V A  G +LV AD+   E  + + +       +   T           + 
Sbjct: 803  DRLGSELRAMVQAPPGYRLVGADVDSQELWIASVLGDAYAWGEHGATPLGWMTLSGNKSN 862

Query: 414  ARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPE 473
                +   A+     R   KV+  A  Y  G +  + +        +      K      
Sbjct: 863  QSDMHSITAKAVGISRDHAKVINYARIYGAGQQFAENLLQQFNPTFSASEAKAKAMKMFS 922

Query: 474  EWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIE 533
              +    +   +++   +   +  + G    R+          V             + +
Sbjct: 923  ITKGKRIY--RLRDEFHDELEDRPYSGYEATRL---------AVQRNRPISEVFHRSSWQ 971

Query: 534  NGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTY 593
             G       R +      +     L   L   R+L         +  +   R L      
Sbjct: 972  GGTESAMFNRLEEIATEAQPKTPFLGCRLS--RAL------EADTGADQEQRFL------ 1017

Query: 594  GGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                   +VQ+ + D   ++   M     +     L+ HDE+     +     A++
Sbjct: 1018 -PTRINWVVQSGAVDFLHLMLVSMRWLMGSHARFCLSFHDELRYLVREDMAPKAAL 1072



 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 64/241 (26%), Gaps = 29/241 (12%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL------- 97
            D          L          IV HN  ++R  L+  + L+    R++ T+       
Sbjct: 257 VDTERPHYTLDELIPLGSGPG-LIVGHNVSYDRARLRDQYLLEDTRTRFVDTMSLHMCVS 315

Query: 98  -VLARSNGLPSALKAVG-EALKLSSQ----KMEEGKELI--ARFCKGETHECLYDRNKPN 149
            V +    +  + K    E L    Q     + E   L         E      +     
Sbjct: 316 GVTSYQRAMLKSKKEPAPEDLGWLEQSSLNSLVEVHRLYCGGEPLSKEPRNIFVEGTMEQ 375

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-TIND----------RGYC 198
            R+ ++    YC GDV  T  I  +L PL ++           +                
Sbjct: 376 VRQNFQSLVNYCAGDVEATYRILSQLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERY 435

Query: 199 VDVALA--HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
           +  +      L+        +  +E  SL +            + W      L      +
Sbjct: 436 IHESQLTYEDLSIEAKYHLGRRAEEACSLLHDEQYKKHLWLWDEDWSVQSLKLKKAPKRK 495

Query: 257 T 257
            
Sbjct: 496 P 496


>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
 gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
          Length = 1469

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 37/150 (24%)

Query: 2   ATLFIDFETRSPID-----------LTKCGICKYAEDV-------------CVILFAFGF 37
             +  D ET                + + GI                     +   +   
Sbjct: 410 KFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKHQFFIKPTGKIPPAITKITGISQKM 469

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP---IHRWI 94
            D     W+        + + + ++++   +VAHN+ F+ + L+  F         +  I
Sbjct: 470 IDETAISWEIA-----LEKITKIIKDS--VLVAHNAAFDFSFLEQFFRQKAKKSLKNPII 522

Query: 95  CTLVLARSNGL---PSALKAVGEALKLSSQ 121
            TL ++R         +LK V +  ++   
Sbjct: 523 DTLEVSRFLNPNEKSHSLKNVAKRYEIEYD 552


>gi|310792006|gb|EFQ27533.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
          Length = 882

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 39/150 (26%), Gaps = 19/150 (12%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L      +    +          QVL E   +  +  V H ++ +   L+      + ++
Sbjct: 261 LMQISTREKDWIVDTLKPWREQLQVLNEVFADPSIIKVFHGAFMDMVWLQRDLG--LYVN 318

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T                 E L    + +    +    F   + ++    R +P   
Sbjct: 319 GLFDT-------------GMACEVLHYPQKSLAFLLKKFVNFDADKKYQLADWRVRPLS- 364

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                   Y + D      I+ ++      
Sbjct: 365 ---EEMLYYARSDTHYLLYIYDKMRNELVM 391


>gi|262342269|gb|ACY54645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342289|gb|ACY54655.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342317|gb|ACY54669.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342319|gb|ACY54670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342323|gb|ACY54672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342325|gb|ACY54673.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 65/275 (23%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  VHDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|331082129|ref|ZP_08331257.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405724|gb|EGG85254.1| hypothetical protein HMPREF0992_00181 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 405

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 22/147 (14%)

Query: 3   TLFIDFETRSPID--LTKCGICKYAEDVCVILFAFGFDDHPVE--------LWDCVHDPV 52
            +  D ET +  +  ++  GI        +  ++   +               D      
Sbjct: 112 YIAFDVETPNKNNDRISYAGILLVCNGEIIKNYSTLINPETRFDHFNTVLTGIDASAVCH 171

Query: 53  MP--QVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR---- 101
            P  +    ++E+      I+AHN+ F+ +VL      + L +P  +++CT   +R    
Sbjct: 172 APTFKEYWPSIEDLFKKYVIIAHNANFDLSVLSKTLLHYGLKVPPIKYVCTYNESRNKFP 231

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKE 128
             G   +LK++ E   +  +   + K 
Sbjct: 232 QLG-KYSLKSMAEYFDIPLENHHDAKS 257


>gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 1530

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/341 (11%), Positives = 83/341 (24%), Gaps = 59/341 (17%)

Query: 3   TLFIDFETR----SPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELW--------DCV 48
            +  D ET     +   + +    K      +  F    +      +          D +
Sbjct: 450 YVVFDLETTGFSSTKDKIIEIAGVKIKHGKKIQEFQALINPQEKLSQTIINITNITDDML 509

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
                   +     N   +  +VAHN+ F+ T LK       +       I T+ L++  
Sbjct: 510 EGKNTIDQVLPDFLNFIENCILVAHNATFDITFLKEKIKELGIAYKPQPVIDTMTLSQRF 569

Query: 104 GLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   +LK +    K+   KMEE    ++                 +  +  +    
Sbjct: 570 FSEFLKYFSLKRLATVFKV---KMEEHHRALSDANTTAQVFIKMIDQLSDASKNDKNVLI 626

Query: 160 YCKGDV--------TVTREIFKRLEPLSSKEQELWYL---DQTINDRGYCVDVALAHTL- 207
               D+          +  I   +            L         +   V  +      
Sbjct: 627 TNFFDLKDPIDPKYERSYHINILVANQKGYRNLFELLSAALTDGFYKKPRVLKSSLSKHR 686

Query: 208 -----------NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE 256
                      + I ++      ++L               +    L  + G   E +  
Sbjct: 687 EGLLVGSGCYDSNIFEIALNSNIEKLRKAISFYDYIEIQPPQAYKHLISQLGDKGEKIIH 746

Query: 257 TTCQRVLSSNKKL----------TPQAIQVFNNRMRASRSA 287
           +T  +++   KK                   + R    ++ 
Sbjct: 747 STLIKIIEETKKQNKIIIATGDVHYIHPWEKDYRQIYIKAK 787


>gi|119476222|ref|ZP_01616573.1| ribonuclease D [marine gamma proteobacterium HTCC2143]
 gi|119450086|gb|EAW31321.1| ribonuclease D [marine gamma proteobacterium HTCC2143]
          Length = 384

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 55/192 (28%), Gaps = 34/192 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLKEA 60
            L +D E      +             ++  +    +            D   P  L   
Sbjct: 34  VLALDTE-----FIRTDTFYPI---GALLQIS----EGTGCFLIDPLSIDDFSP--LTAL 79

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  +  V H+   +  V +  F   +     I T + A        L   G +L    
Sbjct: 80  LTDPAIVKVLHSCSEDLEVFERLF--QVLPQPLIDTQIAA-------GLDGYGFSLGY-- 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           QKM E    I    KGET      R     +        Y   DV    E++++L+    
Sbjct: 129 QKMTEALLQIH-VAKGETRSNWLQRPLTESQIH------YAALDVAYLPEMYQQLKQSLE 181

Query: 181 KEQELWYLDQTI 192
            +    +L    
Sbjct: 182 SKGRWQWLLDEC 193


>gi|9714080|emb|CAC01390.1| WlaX protein [Campylobacter jejuni]
          Length = 276

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 63/203 (31%), Gaps = 46/203 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M       +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 91  IDGQNEKEMIANFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 150

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++  FC+     
Sbjct: 151 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKLFCEN---- 204

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD----QTINDRG 196
                             EYC+ DV  T  +F + E + +   E  Y+D         R 
Sbjct: 205 ------------ELEKIHEYCESDVLNTYMLFLKYELIKANVSEEDYIDFLSYMRDFLRA 252

Query: 197 YCVDVALAHTLNQIVDVERTKLD 219
              D +      +  + E +K+ 
Sbjct: 253 KKSDRSYTEVFAKACESEISKVQ 275


>gi|238022806|ref|ZP_04603232.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147]
 gi|237866009|gb|EEP67145.1| hypothetical protein GCWU000324_02718 [Kingella oralis ATCC 51147]
          Length = 244

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 51/188 (27%), Gaps = 46/188 (24%)

Query: 2   ATLFIDFETRS------PID---------------LTKCGICKY--------AEDVCVIL 32
             + +D ET                          LT+  +  Y        AE   +  
Sbjct: 7   RQIILDTETTGFYHSAAENPDRLIEFAGLEMVNRQLTENTLHLYIHPQRDIPAEAAAIHG 66

Query: 33  FAFG-FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI 90
                 +  PV          + Q + + L      ++ HN+ F+   L      + +P 
Sbjct: 67  ITLDQLEGKPVF-------AQVAQQIFDFL--KGAELIIHNAKFDIGFLNAEFARVGLPP 117

Query: 91  H----RWICTLVLAR--SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                  I TL +AR    G  + L A+   L +   +      LI     G  +  +  
Sbjct: 118 IDSVCSVIDTLEMARNKYPGQKNNLDALCNRLGVDRSRRVLHGALIDCELLGGVYLAMTR 177

Query: 145 RNKPNHRE 152
                   
Sbjct: 178 NQFSLTDV 185


>gi|157964873|ref|YP_001499697.1| DNA polymerase III subunit epsilon [Rickettsia massiliae MTU5]
 gi|157844649|gb|ABV85150.1| DNA polymerase III epsilon chain [Rickettsia massiliae MTU5]
          Length = 229

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 51/184 (27%), Gaps = 36/184 (19%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYAEDVCVILF-AFGFDDHPV 42
             + +D ET                       LT      Y      + F A+       
Sbjct: 5   REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGISG 64

Query: 43  ELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFNLDIPIHR 92
           E        H   +     E + ++ + I  HN+ F+          LK      + +  
Sbjct: 65  EFLKDKPLFH--TIADDFLEFISDSKLII--HNAPFDIKFLNHELSLLKRTEIKLLELAN 120

Query: 93  WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPN 149
            I TLV+ARS        L A+ +  K+ +   +    L       E   E +  R    
Sbjct: 121 TIDTLVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMGGRQSAF 180

Query: 150 HREA 153
               
Sbjct: 181 KMVD 184


>gi|242034371|ref|XP_002464580.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
 gi|241918434|gb|EER91578.1| hypothetical protein SORBIDRAFT_01g021230 [Sorghum bicolor]
          Length = 882

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/253 (10%), Positives = 64/253 (25%), Gaps = 27/253 (10%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           FA         +        +   L+E   +     V H +  +   L+   +  I +  
Sbjct: 285 FAISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQR--DFSIYVCN 342

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
              T   ++   +                     + L+  FC    ++     +      
Sbjct: 343 LFDTGQASKVLQMDRN----------------SLEHLLHHFCGVTANKEYQAADWRLRPL 386

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                 +Y + D      I+  +     ++      L   +  R   + + L        
Sbjct: 387 P-DEMIKYAREDTHYLLYIYDLMRLRLVNESSGENDLLLEVCKRSNEICLQLYEKEQLTD 445

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWL----FLETGLHLEDLTETTCQRVLSSNK 267
                    +   L    +S    L + +  +       TG  L +    T   +     
Sbjct: 446 TSYLHIHGLKENELNARQLSVLSSLYRWRDGIARAEDESTGYILPNK---TLLEIAKEMP 502

Query: 268 KLTPQAIQVFNNR 280
             + +  ++  +R
Sbjct: 503 VTSGKLKRIVKSR 515


>gi|134093833|ref|YP_001098908.1| putative DNA polymerase/helicase [Herminiimonas arsenicoxydans]
 gi|133737736|emb|CAL60781.1| putative DNA-polymerase/ribonuclease/exonuclease [Herminiimonas
           arsenicoxydans]
          Length = 193

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 27/141 (19%)

Query: 2   ATLFIDFETRSPI----DLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVH----- 49
             +FID ET         +T+ GI     D  +  ++   +     P  + D        
Sbjct: 6   KLIFIDLETTGANLINDRITEIGIVTVNADGDIDRWSSFVNPGRPIPSFIQDLTGISDRM 65

Query: 50  ------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLA 100
                    +   ++E LE+     +AHN+ F+   L          + I   +CT+ L+
Sbjct: 66  VATAPTFETLADTVRERLEDG--LFIAHNARFDYGFLHHALARAGHALSI-DVLCTVKLS 122

Query: 101 RSNGLP---SALKAVGEALKL 118
           R          L  +     L
Sbjct: 123 RRFFPEEKRHNLDTLIARHGL 143


>gi|49118127|gb|AAH73087.1| FFA-1 protein [Xenopus laevis]
          Length = 1434

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 70/275 (25%), Gaps = 56/275 (20%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    +    +   V L      +    L+        P+ LK  LE+  V  V     
Sbjct: 76  DIEWPPVYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKV----- 130

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE-----L 129
                      + I   +W    +++        LK   E  ++++QK+   ++     L
Sbjct: 131 ----------GVGIEGDQW---KLMS---DYELKLKGFIELSEMANQKLRCKEKWSLNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           I    K +  +    R               Y   D      I+K+LE       +    
Sbjct: 175 IKHLFKEQLIKESSVRCSNWDIFPLTEDQKLYAATDAYAGLLIYKKLE-----GMDAHES 229

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
           D     R    D          +      L  ++ +       + R +            
Sbjct: 230 DSFRVGREGVADCKGVKRQLTDLSKGLMDLVNQVPNSFGCYTEAVRAV------------ 277

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                        +L    +   +   +     +A
Sbjct: 278 ------------DILEDLSEKLEELRNIMKEASKA 300


>gi|46202610|ref|ZP_00208583.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
          Length = 398

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 49/186 (26%), Gaps = 23/186 (12%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L             D +   +    L E + +T+V  V H +  +  +       D
Sbjct: 37  PQLCLVQVA-GPDEARAIDPLAPGMDLTPLFELMADTNVLKVFHAARQDVEIFLHLA--D 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                   T + A   G   +                  + L ++  K    + +   + 
Sbjct: 94  AIPTPIFDTQIAAMVCGFGDS---------------VGYETLASQLAKARIDKSMRFTDW 138

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----QELWYLDQTINDRGYCVDVAL 203
                +     +Y   DVT  R  +++L     +          +        Y VD   
Sbjct: 139 SIRPLS-EKQIQYALADVTHLRVAYEKLVRKLERNGRIEWLSEEMALLTEPGTYRVDPEN 197

Query: 204 AHTLNQ 209
           A    +
Sbjct: 198 AWRRLK 203


>gi|239947177|ref|ZP_04698930.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921453|gb|EER21477.1| DNA polymerase III, epsilon subunit [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 240

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 51/184 (27%), Gaps = 36/184 (19%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYAEDVCVILF-AFGFDDHPV 42
             + +D ET                       LT      Y      + F A+       
Sbjct: 16  REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRMHGISG 75

Query: 43  ELW---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFNLDIPIHR 92
           E        H   +     E + ++ + I  HN+ F+          LK      + +  
Sbjct: 76  EFLKDKPLFH--TIADDFLEFIADSKLII--HNAPFDIKFLNHELSLLKRAEIKLLELAN 131

Query: 93  WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPN 149
            I TLV+ARS        L A+ +  K+ +   +    L       E   E +  R    
Sbjct: 132 TIDTLVMARSMFPGSKYNLDALCKRFKVDNSSRQLHGALKDAALLAEVYVELMGGRQSAF 191

Query: 150 HREA 153
               
Sbjct: 192 KMVD 195


>gi|57238013|ref|YP_179262.1| polysaccharide biosynthesis protein [Campylobacter jejuni RM1221]
 gi|205355875|ref|ZP_03222644.1| hypothetical protein Cj8421_1162 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|57166817|gb|AAW35596.1| polysaccharide biosynthesis protein [Campylobacter jejuni RM1221]
 gi|205346309|gb|EDZ32943.1| hypothetical protein Cj8421_1162 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|315058572|gb|ADT72901.1| Polysaccharide biosynthesis protein WlaX [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 264

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 46/203 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 79  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 138

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 139 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 188

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD----QTINDRG 196
                    +        EYC+ DV  T  +F + E + +   E  Y+D         R 
Sbjct: 189 --------FYENELEKIHEYCESDVLNTYMLFLKYELIKANVSEEDYVDFLSYMRDFLRE 240

Query: 197 YCVDVALAHTLNQIVDVERTKLD 219
              D +      +  + E +K+ 
Sbjct: 241 KKSDRSYTEVFAKACESEISKVQ 263


>gi|283956529|ref|ZP_06374009.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792249|gb|EFC31038.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 249

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 63/203 (31%), Gaps = 46/203 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 64  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 123

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 124 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 173

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD----QTINDRG 196
                    +        EYC+ DV  T  +F + E + +   E  Y+D         R 
Sbjct: 174 --------FYENELEKIHEYCESDVLNTYMLFLKYELIKANVSEEDYVDFLSYMRDFLRA 225

Query: 197 YCVDVALAHTLNQIVDVERTKLD 219
              D + A    +  + E +K+ 
Sbjct: 226 KKSDRSYAEVFAKACENEISKVQ 248


>gi|148255258|ref|YP_001239843.1| ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1]
 gi|146407431|gb|ABQ35937.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. BTAi1]
          Length = 384

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 50/201 (24%), Gaps = 21/201 (10%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
                + D + + +      E + N  V  V H +  +  ++    N+    H    T V
Sbjct: 47  PDEALVIDALAEGIDLTSFFELMANEKVLKVFHAARQDIEIIWHRANIV--PHPIFDTQV 104

Query: 99  LARSNGLPSA--LKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            A   G   +     + E +      K     +                R     +  + 
Sbjct: 105 AAMVLGYGDSIAYDQLVERITGHRPDKTHRFTDWSR-------------RPLSKEQVHYA 151

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
                   DV    +   +    S    E   +  +   R Y      A    +   V +
Sbjct: 152 EADVTHLRDVFAALDADLKKRGRSDWVSEEMEILTS--PRTYDFHPERAWERLKT-RVRK 208

Query: 216 TKLDQELESLTYGLVSSSRCL 236
            K    L  +       ++  
Sbjct: 209 PKELAVLMEVAAWREQEAQSR 229


>gi|194755160|ref|XP_001959860.1| GF11823 [Drosophila ananassae]
 gi|190621158|gb|EDV36682.1| GF11823 [Drosophila ananassae]
          Length = 1018

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 75/285 (26%), Gaps = 39/285 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            + +D E    I+L   G         + L   G       L+D    P M     LK  
Sbjct: 571 VVSLDCE---GINLGLKG--------EITLIEIGTTRGEAFLFDVQSCPAMITDGGLKTV 619

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+  V  V H+   +   L       I +     T           + K V +A  +S 
Sbjct: 620 LEHEQVIKVIHDCRNDAANL--YLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISL 677

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTR--EIFKRLEP 177
             + E         K +  +      K   +    R    Y  GDV V    ++F  L  
Sbjct: 678 NSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLAR 737

Query: 178 LSSKEQELW-------YLDQTINDRGYCVDVA--LAHTLNQIVDVERTKLDQEL------ 222
               E ++         +   I      +        T    +  +  +  + +      
Sbjct: 738 QIKPENKVLFSELCTEQILMQIKPNEVKIRKKQRKVSTEVSDLKQKLAQTSKSIVLSNRE 797

Query: 223 ------ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                   LT       +   K+   L            ++  + 
Sbjct: 798 IRLLRYMDLTEDEKERLKGYYKVAKKLEKMESAGNPSKDQSDSED 842


>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
          Length = 1447

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 37/150 (24%)

Query: 2   ATLFIDFETRSPID-----------LTKCGICKYAEDV-------------CVILFAFGF 37
             +  D ET                + + GI                     +   +   
Sbjct: 388 KFVIFDLETTGLSAFYNEIIEFGAIVLQNGIEIEKHQFFIKPTGKIPSAITKITGISQKM 447

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP---IHRWI 94
            D     W+        + + + ++++   +VAHN+ F+ + L+  F         +  I
Sbjct: 448 IDETAISWEIA-----LEKITKIIKDS--VLVAHNAAFDFSFLEQFFRQKAKKSLKNPII 500

Query: 95  CTLVLARSNGL---PSALKAVGEALKLSSQ 121
            TL ++R         +LK V +  ++   
Sbjct: 501 DTLEVSRFLNPNEKSHSLKNVAKRYEIEYD 530


>gi|262342311|gb|ACY54666.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 66/275 (24%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G        +   +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLSGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  VHDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa]
 gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa]
          Length = 858

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 29/167 (17%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+E  ++     V H +  +   L+  F + I       T   +R   L           
Sbjct: 298 LREVFKDPAKRKVMHGADRDVVWLQRDFGIYI--CNLFDTGQASRVLKLERN-------- 347

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + L+  FC    ++   + +             Y + D      I+  + 
Sbjct: 348 --------SLEHLLHHFCGVTANKEYQNADWRLRPLP-DEMIRYAREDTHYLLHIYDLMR 398

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
            L   +     +D          D  L     +  DV     ++EL 
Sbjct: 399 ALLLSK----PIDNE------NADPPLLEVYKRSYDVCMQLYEKELF 435


>gi|171057726|ref|YP_001790075.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170775171|gb|ACB33310.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 241

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 59/203 (29%), Gaps = 40/203 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  +F+D ET     L+     +  E  CV +                       A    
Sbjct: 1   MRQIFLDTETTG---LSHESGDRVVELGCVEMVNRRLTGRNLHHYFNPQRANHEEAVRVH 57

Query: 39  D-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIP--IH 91
                 L D      + Q   + + + ++  +AHN+ F+       LK   +  +   + 
Sbjct: 58  GLTDAFLADKPLFSAVAQEFVDFVRDAEI--IAHNANFDVGFLDAELKRIGHPPLKQLVD 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGET----HECLYDR 145
           +   +LV+AR        +L A+   L++ +        L+      E            
Sbjct: 116 KVTDSLVMAREQFPGKANSLDALCRRLEVDNTSRTVHGALLDAGLLAEVYIRMTRGQNSL 175

Query: 146 NKPNHREAWRLFGEYCKGDVTVT 168
              +         E     V +T
Sbjct: 176 VIDDSPVQSEQQVEQPLIAVDLT 198


>gi|187777136|ref|ZP_02993609.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
 gi|187774064|gb|EDU37866.1| hypothetical protein CLOSPO_00681 [Clostridium sporogenes ATCC
           15579]
          Length = 309

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 37/147 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVEL-----------WDCV 48
           M  + IDFET +    + C I     +D  +I          V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEII--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  HDPVMPQVLKEALENTDV-----------TIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
              + P ++++ LE   +            ++AHN+ F+ +VL+     +N+ +P   +I
Sbjct: 53  IHGIRPHMVQDELEFDKIWGKIKGYFNNNLVIAHNASFDMSVLRSTLELYNIKMPSFEYI 112

Query: 95  CTLVLA---RSNGLPSALKAVGEALKL 118
           CT+ L+    SN   + L  V   L  
Sbjct: 113 CTMKLSKNFYSNIDNAKLNTVNNFLGY 139


>gi|167521656|ref|XP_001745166.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776124|gb|EDQ89744.1| predicted protein [Monosiga brevicollis MX1]
          Length = 882

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/362 (11%), Positives = 82/362 (22%), Gaps = 68/362 (18%)

Query: 295 VEAMNSDGRLRGTLQFLGASRTGR-WSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSD 353
              +  D R R     L    T +           +P          + +     + ++ 
Sbjct: 513 QLVVMDDRRERERFLTLNGRSTPKQLDSDEPIGAIIPMVLPFGTVTRRAVEKTWMTASN- 571

Query: 354 PDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTY 413
               Q I   +++ + A  G KLV AD+   E  + + +  ++   +   T         
Sbjct: 572 -PKPQRIGSELKAMIQAPPGYKLVGADVDSQELWIASVIGDQRLGREHGATAMGWMTLQG 630

Query: 414 ARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
            ++       +T       R   K+      Y  G      +       +          
Sbjct: 631 TKNDGTDMHSMTAKILGINRDEAKIFNYGRIYGAGKAFAASLLQKFNPTITEREAQ---- 686

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFE 529
                   AE      +      A    F G+                      L     
Sbjct: 687 ------AKAEELYLETKGKRIAGARGGYFDGSESHMF---------------TSLEDIAT 725

Query: 530 QTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR 589
                   +  +    +                   R L                     
Sbjct: 726 AATPRTPVLGFQITDGLLPRNF------------MHRFLCVS------------------ 755

Query: 590 EYTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEFN 643
              Y       +VQ+ + D   ++   M   +        + +T+HDEI     D D   
Sbjct: 756 MSQYMTSRVNWVVQSSAVDFLHLMITSMDHFIRTYGLRARLCITIHDEIRYIVADEDIAR 815

Query: 644 AS 645
            +
Sbjct: 816 VA 817


>gi|297848030|ref|XP_002891896.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337738|gb|EFH68155.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 681

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 33/168 (19%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEA 115
           L+E  ++     V H +  +   L+  F + +       T   +R   L   +L+ + + 
Sbjct: 273 LRELFKDPKKKKVMHGADHDIIWLQRDFGIYV--CNLFDTGQASRVLKLERKSLEFLLKH 330

Query: 116 L-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              +++ K  +  +                R  P       +   Y + D      I+  
Sbjct: 331 YCGVAADKQYQNADW-------------RIRPLP------DVMTRYAREDTHYLLYIYDV 371

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           +                  D     D  L        DV     ++EL
Sbjct: 372 MRIDLH--------TMAKEDEQS--DSPLVEAYKGSYDVCMQLYEKEL 409


>gi|17987486|ref|NP_540120.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
 gi|225852267|ref|YP_002732500.1| ribonuclease D [Brucella melitensis ATCC 23457]
 gi|256044440|ref|ZP_05447344.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113284|ref|ZP_05454152.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
 gi|256264225|ref|ZP_05466757.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
 gi|260563791|ref|ZP_05834277.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265990860|ref|ZP_06103417.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994696|ref|ZP_06107253.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
 gi|17983183|gb|AAL52384.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
 gi|225640632|gb|ACO00546.1| ribonuclease D [Brucella melitensis ATCC 23457]
 gi|260153807|gb|EEW88899.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|262765809|gb|EEZ11598.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
 gi|263001644|gb|EEZ14219.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094471|gb|EEZ18293.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
 gi|326408773|gb|ADZ65838.1| ribonuclease D [Brucella melitensis M28]
 gi|326538491|gb|ADZ86706.1| ribonuclease D [Brucella melitensis M5-90]
          Length = 385

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      DH   L D +   +        + + ++  V H +  +  ++      +
Sbjct: 37  PELCLIQMASPDHTA-LVDALAPGLDLAPFFRLMADEEIVKVFHAARQDIEIV-FHLG-N 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G          +     QK   GK L     K         R  
Sbjct: 94  LIPSPVFDTQVAAMVCGFG-----DAISYDQLVQK-VTGKHL----DKSSRFTDWRRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            + +        Y   DVT  R+I+  L+    KE    ++++ I
Sbjct: 144 SDKQLD------YALADVTYLRDIYLYLKEELQKEGRSEWVNEEI 182


>gi|301169093|emb|CBW28690.1| ribonuclease D [Haemophilus influenzae 10810]
          Length = 382

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 96/328 (29%), Gaps = 64/328 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALE 62
           + +D E           +  Y     + L    +D   V L D        P      L 
Sbjct: 33  VALDTE--------FMRVSTYF--PKLGLIQL-YDGERVSLIDPLAITDFSP--FVALLS 79

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL--PSALKAVG-EALKLS 119
           N  V  V H+   +  V    F  D      I T ++AR  GL   + L  +  + L + 
Sbjct: 80  NPKVLKVLHSCSEDLLVFLQEF--DQLPRPMIDTQIMARFLGLGTSAGLAKLAQQYLNVE 137

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K       I R                       +  +Y  GDV     ++  LE   
Sbjct: 138 IDKGATRTNWIKRPLS-------------------DIQLQYAAGDVWYLLPLYHILEKEL 178

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
           +K      +            +A  H L +    +       +  L    +S  R L + 
Sbjct: 179 AKTPWEQAVRDDCELV-----LAKTHKLQERDSEKAYLDIPNVWKLNPLELSRLRILAQW 233

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQA------------------IQVFNNRM 281
           +  + +E  L L  + ++     L    K  P+                    ++     
Sbjct: 234 RQNVAIERDLALSYIVKS---EHLWKVAKNNPRNTSEMLEMGLTENEVRVRGKKILQLLS 290

Query: 282 RASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
           +A R +       +E ++ D R + T++
Sbjct: 291 QARRISSNDYPKSIERISEDPRYKKTIR 318


>gi|262212387|gb|ACY35810.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 65/275 (23%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        D +  VHDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEADQLAFVHDE 193


>gi|209694623|ref|YP_002262551.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
 gi|208008574|emb|CAQ78749.1| ribonuclease D (rnase d) [Aliivibrio salmonicida LFI1238]
          Length = 374

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 48/158 (30%), Gaps = 25/158 (15%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D V    +   L + L+N  VT V H    +  V +            I T
Sbjct: 47  FDGETLALVDPVEIDDLT-PLWDLLKNESVTKVLHACGEDLEVFQHYAG--CMPTPMIDT 103

Query: 97  LVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            ++A   G   +    K V + L +   K                      R     R  
Sbjct: 104 QIMAAFLGYGLSTGFAKLVSDYLGVDLDK-------------------GESRTDWMARPL 144

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                +Y   DV     +F++L+   ++ +      Q 
Sbjct: 145 SDKQLDYAAADVHYLLPLFEKLQAELAQTEWEKAAYQE 182


>gi|283769033|ref|ZP_06341939.1| exonuclease [Bulleidia extructa W1219]
 gi|283104390|gb|EFC05767.1| exonuclease [Bulleidia extructa W1219]
          Length = 186

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 27/152 (17%)

Query: 2   ATLFIDFETRSPI--DLTKCGICK----YAEDVCVILFAFGFDDHPVELW---------- 45
             + +D ET S     +   G+        E+    L     + +  E +          
Sbjct: 3   RVVAVDVETASSDHRSMCAIGLSVLENGVLEEAFYSLIKPAANANHFEYFNTKVHGIHPK 62

Query: 46  DCVHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVL 99
           D    P +P+V   +K  LE+    +VAHN+ F+ +V+K C       +P   +  ++ L
Sbjct: 63  DVQDAPTLPEVYPTIKSLLESG--IVVAHNAVFDVSVIKNCCLNTGCPVPKVTYFDSVPL 120

Query: 100 ARS---NGLPSALKAVGEALKLSSQKMEEGKE 128
           +R      +   L  V   LK+       G +
Sbjct: 121 SRRAFPLLVNHKLDTVARYLKIPLDHHHAGSD 152


>gi|114797633|ref|YP_760953.1| ribonuclease D [Hyphomonas neptunium ATCC 15444]
 gi|114737807|gb|ABI75932.1| ribonuclease D [Hyphomonas neptunium ATCC 15444]
          Length = 388

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 46/171 (26%), Gaps = 22/171 (12%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L           L D   + +  +   + + +     V H +  +  +        
Sbjct: 42  PELCLIQASAPGVEG-LIDPRAEDLDIRPFLDLIASDRQLKVFHAARQDIEIFNRLIGH- 99

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
            P      T V A + G   +                    LI R  +    +     + 
Sbjct: 100 -PPGPIFDTQVAAMALGFGDS---------------ISYDNLIQRVLRKHIDKSSQFTDW 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL---DQTINDR 195
                + +    Y  GDVT  R+ + ++     K   + ++      + D 
Sbjct: 144 MRRPLSQKQLV-YALGDVTHLRDAYLKMRDELEKAGRMNWVREEMAELEDP 193


>gi|330802281|ref|XP_003289147.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
 gi|325080770|gb|EGC34311.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
          Length = 1045

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 59/235 (25%), Gaps = 35/235 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           DL       Y     V L           + D +       +L     N  +  V H S 
Sbjct: 276 DLEHHNYRSY--QGFVCLMQISTRGED-FIIDTLALRSHIHMLNNVTTNPAIVKVLHGSD 332

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
            +   L+  F + I       T   +R    PS   ++   LK                 
Sbjct: 333 SDIKWLQRDFGIYI--VNMFDTGQASRVLEYPS--ASLAFLLKYFCAVDA---------N 379

Query: 135 KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
           K         R  P          +Y + D      I+ RL      +            
Sbjct: 380 KKYQLADWRIRKIP------EEMIKYAREDTHYLLYIYDRLRNELINK------------ 421

Query: 195 RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
            G   +  L   L +  ++   K ++E+      +  + +   +          +
Sbjct: 422 -GKGSNNLLLEVLRRSRELALLKYEKEILDDNTHIQFAKKLNLQYNPVQLNVLKV 475


>gi|315932270|gb|EFV11213.1| Polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 264

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 46/203 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M       +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 79  IDGQNEKEMIANFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 138

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++  FC+     
Sbjct: 139 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKLFCEN---- 192

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQTINDRG 196
                             EYC+ DV  T  +F + E     +S ++   +        R 
Sbjct: 193 ------------ELEKIHEYCESDVLNTYMLFLKYELIKANVSEEDYINFLSYMRDFLRA 240

Query: 197 YCVDVALAHTLNQIVDVERTKLD 219
              D +      +  + E +K+ 
Sbjct: 241 KKSDRSYTEVFAKACESEISKVQ 263


>gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
 gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
          Length = 616

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 37/161 (22%), Gaps = 46/161 (28%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA------------------------FGFDDHP 41
            D ET         G+     D  +I                              D   
Sbjct: 425 FDTETT--------GLHPEQGD-EIIAIGAVRIVGGRIRPEETFDQLVNPRRPISLDSVR 475

Query: 42  VELWD--CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
           V       + D    + +         D  +V HN  F+   ++       L       +
Sbjct: 476 VHGIQPVLLQDKPPIEEVLPRFYRFARDTVLVGHNVAFDLKFIRQKEKALGLRFD-QPVL 534

Query: 95  CTLVLARSNGL---PSALKAVGEALKLSSQKME--EGKELI 130
            T++LA           L  +  A  +         G  LI
Sbjct: 535 DTMLLAAVVDPERQHYGLDELAAAFGIEPVGRHSALGDALI 575


>gi|182418640|ref|ZP_02949917.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237668503|ref|ZP_04528487.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377502|gb|EDT75056.1| DNA polymerase III subunit epsilon [Clostridium butyricum 5521]
 gi|237656851|gb|EEP54407.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 308

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 25/144 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICK-YAEDVCVI-LFAFGFDDHPVELWDC----------- 47
           M  + IDFET +    + C I     ++  V+    +      +                
Sbjct: 1   MDYIAIDFETANEKRSSPCSIGIVVVKNSEVVEKIHYLIKPKEMRFMPINIGIHGIRPGM 60

Query: 48  ----VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
                    + + +K   +N  V  +AHN+ F+ +VL+     +N++    ++ICT+ L+
Sbjct: 61  VENEPEFDEIWKRIKGYFDNGFV--IAHNASFDISVLRRTMELYNIEPVSFKYICTMKLS 118

Query: 101 ---RSNGLPSALKAVGEALKLSSQ 121
                    S L  V   L     
Sbjct: 119 KNFYPQIENSKLNTVNRFLGYEFD 142


>gi|28278907|gb|AAH45429.1| Zgc:55695 protein [Danio rerio]
          Length = 500

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 43/151 (28%), Gaps = 24/151 (15%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L      +    + D +       +L E   +  +  V H +  +   L+  F   + + 
Sbjct: 326 LMQISTREED-FIIDTLELRSEMYILNETFTDPAIVKVFHGADSDIEWLQKDFG--LYVV 382

Query: 92  RWICTLVLARSNGLPS-ALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
               T   AR   L   +L  + +    +SS K  +  +                R  P 
Sbjct: 383 NMFDTHHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADW-------------RIRPLP- 428

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                    +Y + D      ++ R+     
Sbjct: 429 -----DEMLKYAQADTHYLLYVYDRVRADLF 454


>gi|71024099|ref|XP_762279.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
 gi|46101781|gb|EAK87014.1| hypothetical protein UM06132.1 [Ustilago maydis 521]
          Length = 1027

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 46/183 (25%), Gaps = 36/183 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMPQVLKE 59
             + ID E              Y   VC++  +  + D    + D + D      ++L  
Sbjct: 361 NEIAIDLE--------HHSYRTYQGIVCLMQLSTRWGD---WIIDTLSDDVRQHAELLNS 409

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAV-GEALK 117
           +  N D   V H +  +   L+      + +     T             L  +      
Sbjct: 410 SFTNPDKVKVLHGANHDVLWLQRDLG--LYLVNLFDTYHATNVLMFPSHGLNYLMARYCN 467

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             + K  +  +                R  P      +    Y + D      I+  L  
Sbjct: 468 FDADKRYQLADW-------------RIRPLP------KEMLYYARSDTHTLLFIYDNLRH 508

Query: 178 LSS 180
              
Sbjct: 509 ELM 511


>gi|328789753|ref|XP_395230.4| PREDICTED: DNA polymerase subunit gamma-1, mitochondrial [Apis
           mellifera]
          Length = 1093

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 79/297 (26%), Gaps = 48/297 (16%)

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEA--RVLAWMAGEQWKLKAFETGEDLY--V 410
              + +   +R+ + A  G  +V AD+   E     +   A  +    A   G       
Sbjct: 735 SDTERVGSELRAMIQAPPGYNIVGADVDSQELWISSIIGDAYYKKIHGATPFGWMTLIGT 794

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
                  +   A+     R   K++  A  Y  G K  + +      ++      +K+  
Sbjct: 795 KANETDMHSVTAKAIGISRNQAKIINYARIYGAGQKFAETLLKQFNPSMTDSEATLKSRK 854

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACE-------RVKKAWRQKHSRVSELWNE 523
                +  + +    +  +  +  + L+             ++     +K+  V    + 
Sbjct: 855 MFTMTKGKKIYKLKPEYINNNNDYDKLYSSYEAYKLSKLHGKIISEMFEKNKWVGGSESA 914

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
           +    E+   N   +       + +       +   L                       
Sbjct: 915 MFNRLEEIACNPHPVTPFLNSRLTVALESSVNDEKFL----------------------- 951

Query: 584 TRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                            +VQ+ + D   ++   M    K      L+ HDE+    P
Sbjct: 952 -----------PTKINWVVQSGAVDFLHLMLVSMKWLMKDHARFCLSFHDEVRYLVP 997



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 41/141 (29%), Gaps = 19/141 (13%)

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTL--------VLAR---SNGLPSALKAVGE 114
             IV HN  F+R+ +K  + L     R+I T+        + +            +    
Sbjct: 209 KIIVGHNVSFDRSKIKEQYWLKQTGLRFIDTMSLHICIGGINSYQRSILNSTKNTEEKC- 267

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDR-----NKPNHREAWRLFGEYCKGDVTVTR 169
              L  Q        I +F  G                 N +E +     YC  DV  T 
Sbjct: 268 --NLEMQTSLNNLADIHKFYCGSEINKNVREVFINGTLKNIKEDFNSLMIYCANDVIATH 325

Query: 170 EIFKRLEPLSSKEQELWYLDQ 190
            +  +L P+  +         
Sbjct: 326 NVLCKLFPIFEERFPHPVTLA 346


>gi|319784197|ref|YP_004143673.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170085|gb|ADV13623.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 383

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 19/164 (11%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           + L           L D +   +  +     + N  V  V H +  +  ++      D+ 
Sbjct: 39  LCLIQMAAPGVTA-LIDPLAPDIDLKPFFRLMANEAVVKVFHAARQDIEIIV-HLG-DLV 95

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            H    T V A   G   +                   +L+ R       +     +  +
Sbjct: 96  PHPVFDTQVAAMVCGFGDS---------------VSYDQLVQRITGARLDKSSRFTDWRH 140

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
              + +   +Y   DVT   E+++ L     +E    +L++ + 
Sbjct: 141 RPLSDKQL-DYALADVTHLIEVYQHLSAELERENRAHWLNEEME 183


>gi|163736203|ref|ZP_02143622.1| ribonuclease D [Phaeobacter gallaeciensis BS107]
 gi|161390073|gb|EDQ14423.1| ribonuclease D [Phaeobacter gallaeciensis BS107]
          Length = 385

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 56/198 (28%), Gaps = 41/198 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVM 53
             + +D E     T                   + L    +    D    L D + D + 
Sbjct: 21  DYVTVDTEFLRERTYYS---------------KLCLVQLAYPGAGDENAVLVDPLADGLS 65

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + L +   N  V  V H +  +  +     +  +       T V A   G        G
Sbjct: 66  LEPLYDLFRNETVVKVFHAARQDLEIF--WVDAQVFPKPLFDTQVAAMVCGF-------G 116

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +          + L+ +  K    +     +      +      Y   DVT  R+I++
Sbjct: 117 EQVGY--------ETLVRKIVKQGLDKTSRFTDWSRRPLSDAQ-KTYALADVTHLRQIYE 167

Query: 174 RLEPLSSKEQELWYLDQT 191
            L     +     ++++ 
Sbjct: 168 YLAAELKRTGRARWVEEE 185


>gi|119385539|ref|YP_916595.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119375306|gb|ABL70899.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 239

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 45/155 (29%), Gaps = 45/155 (29%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMP 54
           M  + +D ET         G      D  ++      +                 +  MP
Sbjct: 1   MREIVLDTETT--------GFDPDTGD-RIVEIG-AVELMNHLPTGRTFHVYINPERPMP 50

Query: 55  QVLKE-------ALENT----------------DVTIVAHNSYFERTVLK---ACFNL-D 87
           Q   E        L +                 D  +V HN+ F+   L           
Sbjct: 51  QEAFEVHGLGDDFLRDKPKFAEIAADFVAFIGDDAKLVIHNASFDMKFLNAELRMVGHAT 110

Query: 88  IPIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
           +P  R + TL +ARS    +  +L A+    ++ +
Sbjct: 111 MPYSRAVDTLEIARSMFPGAQNSLDALCRRFRIDN 145


>gi|224369976|ref|YP_002604140.1| ATP-dependent DEAD/DEAH box helicase family protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223692693|gb|ACN15976.1| ATP-dependent DEAD/DEAH box helicase family protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 978

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 35/180 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFG--FDDH--PVELWDCVHDPVMPQVLKEAL 61
           +D ETR        G  +      ++  +    FD       ++       + Q L+   
Sbjct: 808 LDIETRRSAQ-EVGGWGR----AHLMGVSCAVLFDSGINDFRVYLEADVETLVQDLQAF- 861

Query: 62  ENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVL--ARSNGLPSALKAVGEALKL 118
                 ++  N   F+  VL    + D+     +  +++      G   +L A+     L
Sbjct: 862 ----DLVIGFNIKGFDYKVLSGLVSFDLTTIPTLD-MLVKVHERLGYRLSLDALA-RCTL 915

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
            + K  +G   +                    +       EYCK DV VTR+++      
Sbjct: 916 GTSKSADGLAALEW----------------WKQGEIHRIIEYCKQDVKVTRDLYLFGREH 959


>gi|114762190|ref|ZP_01441658.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Pelagibaca bermudensis HTCC2601]
 gi|114545214|gb|EAU48217.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Roseovarius sp. HTCC2601]
          Length = 229

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 45/159 (28%), Gaps = 32/159 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--- 57
           M  + +D ET            +  E   V L+                +  MPQ     
Sbjct: 1   MREIVLDTETTG---FEPETGDRIVEIGAVELYNH-VPTGETYHQYINPERSMPQEAFEV 56

Query: 58  ----------KEALE---NTDVTIVA------HNSYFERTVLKACFNLD----IPIHRWI 94
                     K       +  +  +       HN+ F+   L A         +P    +
Sbjct: 57  HGLGDDFLRDKPLFAQIVDEFLEFIGDSKLVIHNATFDVKFLNAELGWSKRPLLPKDCAV 116

Query: 95  CTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIA 131
            TL +AR    G P++L A+     + +        L+ 
Sbjct: 117 DTLAIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLD 155


>gi|15894025|ref|NP_347374.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum ATCC
           824]
 gi|15023620|gb|AAK78714.1|AE007589_2 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing
           BRCT domain [Clostridium acetobutylicum ATCC 824]
          Length = 306

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 22/121 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------------LFAFGFDD-HPVE 43
           M    IDFET +    + C I     +D  V+                   G     P  
Sbjct: 1   MKFTAIDFETANEKRNSPCSIGIVVVKDGHVVEKSHHLIRPKEMRFMPINIGIHGIRPAM 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           +        + + +K   ++    ++AHN+ F+ +VL+     +N+++P   +ICT+ LA
Sbjct: 61  VEKEPEFDKVWEKIKHYFDD--TLVIAHNASFDISVLRKSAELYNIELPEFNYICTMKLA 118

Query: 101 R 101
           R
Sbjct: 119 R 119


>gi|262342295|gb|ACY54658.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 66/275 (24%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K+   ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KVLNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  VHDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|326693810|ref|ZP_08230815.1| DNA polymerase III, epsilon subunit [Leuconostoc argentinum KCTC
           3773]
          Length = 177

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 29/146 (19%)

Query: 1   MATLFIDFET-----RSPIDLTKCGICKYAEDVCVI-----LFA----FGFDDHPVELW- 45
           M  + +DFET      S + +             V+     L      F   +  +    
Sbjct: 1   MNFVAMDFETANHEKHSAVSMA----LAVVRQNEVVDEFYSLIQPETYFSARNTAIHGIR 56

Query: 46  --DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
             D    P  P++  +   L   D  +VAHN+ F+  VL+   A + ++ P +  + T+ 
Sbjct: 57  EQDVAQAPKFPEIWAQVSPLFTEDKLVVAHNAPFDHGVLQGTLAYYGIEAPHYMLLDTVR 116

Query: 99  LARSNGLP---SALKAVGEALKLSSQ 121
            +R          L  V E L ++  
Sbjct: 117 SSRQLFPHFRNHKLNTVAENLGITLD 142


>gi|237808321|ref|YP_002892761.1| ribonuclease D [Tolumonas auensis DSM 9187]
 gi|237500582|gb|ACQ93175.1| ribonuclease D [Tolumonas auensis DSM 9187]
          Length = 365

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 73/282 (25%), Gaps = 36/282 (12%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L +A+ +     V H+   +  VL+ C        R   T V A   G  ++L   G   
Sbjct: 66  LWDAIFSDHRLFVFHSCKEDLDVLQVCAQKL--PGRVFDTQVAAAFLGYGASLGYAGLVE 123

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K+    + + + L     +  T                     Y   DV+  + ++  L 
Sbjct: 124 KVCDVTVAKDQTLTDWLARPLTAAQK----------------LYAAKDVSYLQYLYDHLS 167

Query: 177 PLS----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
                    E     +   +  +   V                      L  L      +
Sbjct: 168 QELNTTGKTEWFNEEMTALLEAKQQAVIPDELFREISGAWQLYPSELAVLRELAKWRYQT 227

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +   +K + ++                + VL+   +  PQ  +       + +      +
Sbjct: 228 AISEDKPQNFIVR--------------EEVLADLSRKRPQTERELAQTDISYQQKNRYAD 273

Query: 293 TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSR 334
            +++ +         L      R   +       + + +   
Sbjct: 274 AILQCIQKGMECPVELHPARIKRIMDFPHYKHDFKQIKQRVE 315


>gi|145548742|ref|XP_001460051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427879|emb|CAK92654.1| unnamed protein product [Paramecium tetraurelia]
          Length = 676

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/457 (9%), Positives = 112/457 (24%), Gaps = 72/457 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E             + +      L           +        +  +L     
Sbjct: 219 EIAVDLE----------HNHQISYLGITCLIQLSTRSQDYIIDPFPLWKQLGDMLSVIFA 268

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  +  V H +  +   L+  F L I       T   ++   L                 
Sbjct: 269 NPKIVKVFHGAENDVQWLQRDFGLYI--VNLFDTFHASKELQLMQN-------------- 312

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               + L++ +CK  T +     +            +Y + D      I+ R+     K 
Sbjct: 313 --SFQFLLSEYCKKSTDKTYQTADWTQRPLP-DEMIKYAQIDTHYLLYIYDRMRQDLKKL 369

Query: 183 QELW------------YLDQTINDRGYCV------DVALAHTLNQIVDVERTKLDQELES 224
            +               + +   +    +      D     +L  I++ +  +++ +   
Sbjct: 370 NKPNDNISNIPNYYLEAVLKRSKETALKIYKKPLQDQD--QSLQTILNKQDRRMEAKSFE 427

Query: 225 LTY-----GLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN---KKLTPQAIQV 276
           L             +  +  + +L       + +   TT Q + S     K +       
Sbjct: 428 LMVRLLELREELGIKHDQNPRYFLPNPFLFKIVESKPTTIQELKSQLGGDKNIHEVVKDN 487

Query: 277 FNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
                +  +  +     +          + T Q                 Q  P      
Sbjct: 488 LW---QFLKVLLEFDEKIPTVNIIQEEQQNTTQIQNDEV-------QPNFQVEPLK-IVQ 536

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL----AGIEARVLAWM 392
            +++            + +      + ++S        KL+        + I   +    
Sbjct: 537 FQVNIKKLKNQNKCIVENNLKNENVELIKSQFYCESPFKLLNVFYEGLGSQIFQSMKEQS 596

Query: 393 AGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQR 429
             ++  ++  +  +   + T          +   DQ+
Sbjct: 597 QQQKQLIEETQQQKIEKINTSDFIKLPKLDEPNHDQK 633


>gi|90423836|ref|YP_532206.1| ribonuclease D [Rhodopseudomonas palustris BisB18]
 gi|90105850|gb|ABD87887.1| ribonuclease D [Rhodopseudomonas palustris BisB18]
          Length = 384

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 65/259 (25%), Gaps = 27/259 (10%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
               + D +   +  +   + + N DV  V H +  +  ++     +    H    T V 
Sbjct: 48  EDAVVVDTLAPGIDLKPFFDLMANDDVLKVFHAARQDIEIVWHRAGIV--PHPIFDTQVA 105

Query: 100 ARSNGLPSA--LKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           A   G   +     + E +      K     +   R    E                   
Sbjct: 106 AMVLGYGDSIAYDQLVERITGHRPDKTHRFTDWARRPLTDEQLHYAVSDVTHLRDV---- 161

Query: 157 FGEYCKGDVTV-----------TREIFKRLEPLSSKEQELWYLDQTINDRGY--CVDVAL 203
              +   D  +             E+    +      +  W   +T   +     V + +
Sbjct: 162 ---FAALDADLKKRGRSDWVSEEMEVLTSPKTYDFHPERAWERLKTRVRKPKELAVLMEV 218

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSS--SRCLEKLKTWLFLETGLHLEDLTETTCQR 261
           A    Q          + L+  T G +++     LE+L     L  G             
Sbjct: 219 AAWREQEAQSRDVPRSRVLKDDTVGDIATHAPTSLERLAGLRSLPKGFDRSKWGADIVAA 278

Query: 262 VLSSNKKLTPQAIQVFNNR 280
           V     +      ++   R
Sbjct: 279 VQRGLARDPATLPKIEKPR 297


>gi|198473302|ref|XP_001356241.2| GA21456 [Drosophila pseudoobscura pseudoobscura]
 gi|198139395|gb|EAL33303.2| GA21456 [Drosophila pseudoobscura pseudoobscura]
          Length = 1153

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT----LVLAR 101
           D          L          +V HN  ++R  L+  + ++    R++ T    + ++ 
Sbjct: 238 DFERPHYTLDELIPLGTGGPGLVVGHNVSYDRARLREQYLIEDSGTRFVDTISLHMCVSG 297

Query: 102 SNGLPSAL---------KAVGEALKLSSQKMEEGKELI--ARFCKGETHECLYDRNKPNH 150
                 A+         + +G   + S   + E   L         E      +      
Sbjct: 298 VTSYQRAMLKSKKEPAPEDLGWLEQSSLNSLLEVHRLYCGGEALSKEPRNIFVEGTLDQV 357

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-TIND----------RGYCV 199
           R  ++L   YC GDV  T  + + L P+ +            +                +
Sbjct: 358 RHNFQLLVNYCAGDVEATHRVLRVLYPMYADRFPHPASLAGMLEMGSAYLPVNSNWERYI 417

Query: 200 DVALA--HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
             A      L+        +  +E  SL Y     S      + W   +  L      + 
Sbjct: 418 REAQLTYEDLSIEAKYHLGRRAEEACSLLYDEQYRSNLWLWDEDWGVQQLKLKQPPKRKP 477



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 78/298 (26%), Gaps = 35/298 (11%)

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVT 411
               +   +RS V A  G +LV AD+   E  + +     +  G+                
Sbjct: 790  PNRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGQHGATPLGWMTLSGSKA 849

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +   ++  A+     R   KV+  A  Y  G +  + +        +      K    
Sbjct: 850  NGSDMHSI-TAKAVGISRDHAKVINYARIYGAGQQFAETLLRQFNPTFSASEAKAKAMKM 908

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                +    +   ++E   +   +  + G    R+                       Q 
Sbjct: 909  FAITKGKRVY--RLREEFHDELEDRAYSGYEASRL---------------------ALQR 945

Query: 532  IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  +   +                 +    G       +G   S    +     +E 
Sbjct: 946  NRTLGEV-FHRPNWQGGTESAMFNRLEEIAT--GAQPKTPFLGGRLSRALESDGGPEQEQ 1002

Query: 592  TYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
             +       +VQ+ + D   ++   M           L+ HDE+     +     A++
Sbjct: 1003 RFLPTRINWVVQSGAVDFLHLMLVSMRWLMGPHVRFCLSFHDELRYLVQEDMAAKAAL 1060


>gi|195164742|ref|XP_002023205.1| GL21087 [Drosophila persimilis]
 gi|194105290|gb|EDW27333.1| GL21087 [Drosophila persimilis]
          Length = 1153

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT----LVLAR 101
           D          L          +V HN  ++R  L+  + ++    R++ T    + ++ 
Sbjct: 238 DFERPHYTLDELIPLGTGGPGLVVGHNVSYDRARLREQYLIEDSGTRFVDTISLHMCVSG 297

Query: 102 SNGLPSAL---------KAVGEALKLSSQKMEEGKELI--ARFCKGETHECLYDRNKPNH 150
                 A+         + +G   + S   + E   L         E      +      
Sbjct: 298 VTSYQRAMLKSKKEPAPEDLGWLEQSSLNSLLEVHRLYCGGEALSKEPRNIFVEGTLDQV 357

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-TIND----------RGYCV 199
           R  ++L   YC GDV  T  + + L P+ +            +                +
Sbjct: 358 RHNFQLLVNYCAGDVEATHRVLRVLYPMYADRFPHPASLAGMLEMGSAYLPVNSNWERYI 417

Query: 200 DVALA--HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
             A      L+        +  +E  SL Y     S      + W   +  L      + 
Sbjct: 418 REAQLTYEDLSIEAKYHLGRRAEEACSLLYDEQYRSNLWLWDEDWGVQQLKLKQPPKRKP 477



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 78/298 (26%), Gaps = 35/298 (11%)

Query: 357  LQIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVT 411
               +   +RS V A  G +LV AD+   E  + +     +  G+                
Sbjct: 790  PNRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGQHGATPLGWMTLSGSKA 849

Query: 412  TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
              +   ++  A+     R   KV+  A  Y  G +  + +        +      K    
Sbjct: 850  NGSDMHSI-TAKAVGISRDHAKVINYARIYGAGQQFAETLLRQFNPTFSASEAKAKAMKM 908

Query: 472  PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                +    +   ++E   +   +  + G    R+                       Q 
Sbjct: 909  FAITKGKRVY--RLREEFHDELEDRAYSGYEASRL---------------------ALQR 945

Query: 532  IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
                  +   +                 +    G       +G   S    +     +E 
Sbjct: 946  NRTLGEV-FHRPNWQGGTESAMFNRLEEIAT--GAQPKTPFLGGRLSRALESDGGPEQEQ 1002

Query: 592  TYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
             +       +VQ+ + D   ++   M           L+ HDE+     +     A++
Sbjct: 1003 RFLPTRINWVVQSGAVDFLHLMLVSMRWLMGPHVRFCLSFHDELRYLVQEDMAAKAAL 1060


>gi|163741269|ref|ZP_02148661.1| ribonuclease D [Phaeobacter gallaeciensis 2.10]
 gi|161385622|gb|EDQ09999.1| ribonuclease D [Phaeobacter gallaeciensis 2.10]
          Length = 385

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 56/198 (28%), Gaps = 41/198 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVM 53
             + +D E     T                   + L    +    D    L D + D + 
Sbjct: 21  DYVTVDTEFLRERTYYS---------------KLCLVQLAYPGAGDENAVLVDPLADGLS 65

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + L +   N  V  V H +  +  +     +  +       T V A   G        G
Sbjct: 66  LEPLYDLFRNETVVKVFHAARQDLEIF--WVDAQVFPKPLFDTQVAAMVCGF-------G 116

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +          + L+ +  K    +     +      +      Y   DVT  R+I++
Sbjct: 117 EQVGY--------ETLVRKIVKQGLDKTSRFTDWSRRPLSDAQ-KTYALADVTHLRQIYE 167

Query: 174 RLEPLSSKEQELWYLDQT 191
            L     +     ++++ 
Sbjct: 168 YLAAELKRTGRARWVEEE 185


>gi|49474836|ref|YP_032877.1| DNA polymerase III epsilon chain [Bartonella henselae str.
           Houston-1]
 gi|49237641|emb|CAF26821.1| DNA polymerase III epsilon chain [Bartonella henselae str.
           Houston-1]
          Length = 235

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 28/146 (19%)

Query: 1   MATLFIDFETRSPI----DLTKCG----ICKYA--EDVCVIL--FAFGFDDHPVELWDCV 48
           M  +  D ET         + + G    + +Y       V L        D  V +    
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRRFHVYLNPQGVIIPDEVVAVHGLT 60

Query: 49  HD--------PVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICT 96
           ++          +     E +     T++AHN+ F+       L       I +   + T
Sbjct: 61  NERLKNEKSFSDIADEFLEFIN--GATMIAHNASFDIGFLNAELARANKPLISVDNILDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS 120
           L +AR      P++L  + +   + +
Sbjct: 119 LAMARRKFPMAPNSLDVLCKRFGIDN 144


>gi|27379246|ref|NP_770775.1| ribonuclease D [Bradyrhizobium japonicum USDA 110]
 gi|27352397|dbj|BAC49400.1| ribonuclease D [Bradyrhizobium japonicum USDA 110]
          Length = 382

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 23/202 (11%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
                + D +   +  +   E + N  V  V H +  +  ++    N+    H    T V
Sbjct: 47  PEEAIVIDTLAVGIDLKPFFELMGNEAVLKVFHAARQDIEIIWHQANII--PHPVFDTQV 104

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            A   G   ++       K++  + ++         +  T E +                
Sbjct: 105 AAMVLGYGDSIAYDQLVEKVTGHRPDKTHRFTDWSRRPLTKEQM---------------- 148

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN----DRGYCVDVALAHTLNQIVDVE 214
            Y   DVT  R++F  L+    K +   ++   +      R Y      A    +   V 
Sbjct: 149 HYAVSDVTHLRDVFAALDADLKKRRRSEWVSIEMEVLTSPRTYDFHPERAWERLKT-RVR 207

Query: 215 RTKLDQELESLTYGLVSSSRCL 236
           + K    L  +       ++  
Sbjct: 208 KPKDLAVLMEVAAWREQEAQSR 229


>gi|298373403|ref|ZP_06983392.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274455|gb|EFI16007.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 249

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 55/192 (28%), Gaps = 52/192 (27%)

Query: 21  ICKYAEDVCVILFAFGF-----DDHPVELWDCVHDPVM--PQVLKEAL----ENTDVTIV 69
              Y+E   ++  + G      D   + +     D  +   Q     L     N +  I 
Sbjct: 66  AGIYSEFAKIVCISIGVFARENDKASLRIKSLAGDNEIAILQDFAYILQKFSANRNCQIC 125

Query: 70  AHNSY-FERTVLKACF---NLDIPI-----------HRWICTLVL-------ARSNGLPS 107
            HN   F+   +        ++IP              ++ TL L       + +     
Sbjct: 126 GHNIKEFDIPFVCRRMLINGIEIPECINVAGKKPWEVPFVDTLELWRFGDYKSYT----- 180

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           +LK +   L + + K                 +           +       YC+ DV  
Sbjct: 181 SLKLLTTILGIPTPKD--------------DIDGSQVARVYYIEKDIARIARYCQKDVLA 226

Query: 168 TREIFKRLEPLS 179
           T  +++RL  + 
Sbjct: 227 TARLYQRLNNIP 238


>gi|295135414|ref|YP_003586090.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
 gi|294983429|gb|ADF53894.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
          Length = 282

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 22/139 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------LWDCVH 49
             +  DFET    +    G+ +Y        F    +                   D  H
Sbjct: 4   DFVVFDFETARGKNPCSLGMVEYKNGKKYREFYELINPEVAYFNPFAIQIHGITYEDVQH 63

Query: 50  DPVMPQVL---KEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN 103
           +    ++       +E    T+VAHN+ F+  VL      + +D+P +   CTL  AR  
Sbjct: 64  ERNFSELWDAMLPFIE--GKTLVAHNAKFDNAVLLYSLQRYGIDVPPYASFCTLQRARRL 121

Query: 104 --GLPSALKAVGEALKLSS 120
                  L ++    ++  
Sbjct: 122 VALPSYKLSSLANFFEVPQ 140


>gi|241670620|ref|XP_002399861.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215506210|gb|EEC15704.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 853

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 15/103 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            L +D E    ++L   G         + L         V L+D    P +     LK+ 
Sbjct: 550 VLALDAE---GVNLGPRGP--------LTLLQLATAAGEVFLFDVQSTPQLFDEGKLKDI 598

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           LE+  +  V H+   +   L   F + +       T     + 
Sbjct: 599 LESQTIVKVVHDCRNDSAALFYQFGIRLQ--NVFDTQAAHATL 639


>gi|163759179|ref|ZP_02166265.1| putative ribonuclease D [Hoeflea phototrophica DFL-43]
 gi|162283583|gb|EDQ33868.1| putative ribonuclease D [Hoeflea phototrophica DFL-43]
          Length = 383

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 39/142 (27%), Gaps = 13/142 (9%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D    +       +  +   E + +T V  V H +  +  ++      D
Sbjct: 37  PELCLIQMAGPDDEGIVDPLAEG-IDLKPFFELMADTSVVKVFHAARQDIEIMVHRG--D 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +  H    T V A   G   ++       +++           A   K         R  
Sbjct: 94  LVPHPIFDTQVAAMVCGFGESISYDQLVSRITG----------AHIDKSSRFTDWSRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTR 169
            + +  + L       DV +  
Sbjct: 144 SDKQLDYALADVTHLRDVYLEL 165


>gi|197335934|ref|YP_002156528.1| ribonuclease D [Vibrio fischeri MJ11]
 gi|197317424|gb|ACH66871.1| ribonuclease D [Vibrio fischeri MJ11]
          Length = 373

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 47/158 (29%), Gaps = 25/158 (15%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D V    +   L + L+N  VT V H    +  V +            I T
Sbjct: 47  FDGETLALVDPVEIDDLT-PLWDLLKNESVTKVLHACGEDLEVFQHYAG--CMPTPMIDT 103

Query: 97  LVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            ++A   G   +    K V + L +   K                      R     R  
Sbjct: 104 QIMAAFLGYGLSTGFAKLVSDYLGIELDK-------------------GEARTDWMARPL 144

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                 Y   DV     +F++L+   S+ Q      Q 
Sbjct: 145 SDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAYQE 182


>gi|188578361|ref|YP_001915290.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522813|gb|ACD60758.1| DNA polymerase III, epsilon subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 244

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 43/155 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYAE---DVC-----VILFA 34
           M  + +D ET          +                   +Y +   D       V    
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLD 87
             F            D  + +     +      ++ HN+ F+   L          +   
Sbjct: 61  LEFLADK----PLFGD--VVEEFLAYI--DGAELIIHNAAFDLGFLDNELALLGDHYGRI 112

Query: 88  IPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS 120
           +     + TL++A  R  G  ++L A+ + L + +
Sbjct: 113 VERATVVDTLMMARERYPGQRNSLDALCKRLGVDN 147


>gi|59712314|ref|YP_205090.1| ribonuclease D [Vibrio fischeri ES114]
 gi|59480415|gb|AAW86202.1| ribonuclease D [Vibrio fischeri ES114]
          Length = 373

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 47/158 (29%), Gaps = 25/158 (15%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D V    +   L + L+N  VT V H    +  V +            I T
Sbjct: 47  FDGETLALVDPVEIDDLT-PLWDLLKNESVTKVLHACGEDLEVFQHYAG--CMPTPMIDT 103

Query: 97  LVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            ++A   G   +    K V + L +   K                      R     R  
Sbjct: 104 QIMAAFLGYGLSTGFAKLVSDYLGIELDK-------------------GEARTDWMARPL 144

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                 Y   DV     +F++L+   S+ Q      Q 
Sbjct: 145 SDKQLHYAAADVHYLLPLFEKLQAELSQTQWEDAAYQE 182


>gi|51893409|ref|YP_076100.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857098|dbj|BAD41256.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 390

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 34/150 (22%)

Query: 1   MAT--LFIDFETRSPI----DLTKCGICKYAE--------------DVCVILFAFGF--- 37
           M    + ID ET         + + G+    E              D  V  +A      
Sbjct: 20  MRYNLVVIDTETTGLEYDQHRIIQIGVVAIKEQRIVKTWESKLRLIDGEVSAYAMQVNRL 79

Query: 38  ---DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP--IH 91
              D    +     H   + + L+E      V + AHN  F+   L        +P    
Sbjct: 80  DPSDMRSEKY---PHPKAVLRKLQEEFLRPGVLLGAHNLSFDLGFLQAEFARHGLPQWQG 136

Query: 92  RWICTLVLARSN--GLPSALKAVGEALKLS 119
            ++ ++ L R+    L ++L+++    ++ 
Sbjct: 137 NFVDSMALGRALLPDLSASLESLARHFRVE 166


>gi|218887288|ref|YP_002436609.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758242|gb|ACL09141.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1198

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 43/187 (22%)

Query: 2    ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF--DDHPVELWDCVHD--PVMPQVL 57
              + +D ETR      + G    A+    +  +     D           D  P M   L
Sbjct: 1024 RYMVLDVETRRAA--AEVGGWHRADR---MGVSVAVLYDAADDSYTPYEQDAVPEMLDRL 1078

Query: 58   KEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLV------LARSNGLPSALK 110
            + A       +V  N   F+  VL      D+     +  ++      L+       +L 
Sbjct: 1079 RAA-----DLVVGFNISRFDYAVLSPFAPYDLHTLPTLD-MLTKVKDRLSYRI----SLD 1128

Query: 111  AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
             + +                  F   ++ + L         +   L  EYC+ DV +TR 
Sbjct: 1129 NLAQ----------------TTFGTPKSADGLQALQW-WKEKRLDLITEYCRKDVEITRA 1171

Query: 171  IFKRLEP 177
            +F     
Sbjct: 1172 LFLHGRE 1178


>gi|332637276|ref|ZP_08416139.1| DNA-directed DNA polymerase III subunit epsilon [Weissella cibaria
           KACC 11862]
          Length = 177

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 35/147 (23%)

Query: 1   MATLFIDFETRS------------------PID----LTKCGICKYAEDVCVILFAFGFD 38
           M  + +DFET S                   +D    L K      A +  +        
Sbjct: 1   MNFVAMDFETASAQRHSAVSMALVVVRDNILVDEFYTLIKPESYFDARNTKIHGIT---- 56

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWIC 95
               ++ D    P + + +K+     +  ++AHN+ F+  VL+     + +  P +  + 
Sbjct: 57  --EADVVDAPKFPEVWEQIKQ-FYTANQLVIAHNAPFDNGVLRETLGHYGISAPHYLSLD 113

Query: 96  TLVLARSNG---LPSALKAVGEALKLS 119
           T+  +R          L  V +AL++ 
Sbjct: 114 TVRTSRKLYPQLPNHKLNTVADALQID 140


>gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989]
 gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989]
          Length = 383

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 68/241 (28%), Gaps = 41/241 (17%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L     ++  V L D +      Q + 
Sbjct: 40  IALDTEFVRTRTYY---------------PHIGLLQIADENG-VYLIDPLAISD-TQPMA 82

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L+N  +  V H    +  V +  F   +       T V A   G  S++        L
Sbjct: 83  DVLQNPAIVKVVHACSEDLEVFQYAFG--VLPESLFDTQVAAGFAGYGSSIG----YANL 136

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             +        I R    +         +P           Y   DV    EI++ L   
Sbjct: 137 LRE--------IKRIDIPKQETRSDWLQRPLSDAQL----RYAALDVEYLLEIYRGLVEK 184

Query: 179 SSKEQELWYLDQTINDRGYCV-DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
             ++Q L +++         + + +  +T    V        ++L  L           +
Sbjct: 185 LQQQQRLLWVEADCQRMIEKLRNTSHENTYYTRVKSAWKLDAEQLTVLAAICRWREGQAK 244

Query: 238 K 238
           K
Sbjct: 245 K 245


>gi|322502828|emb|CBZ37911.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 743

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 31/177 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E              Y+      L      +    + DC+        L     
Sbjct: 254 EIAVDLE----------HHDFYSYQGFTCLMQISTREED-FIVDCLKLRSSMGALAPVFL 302

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  +  V H +  +   L+   +  + +  +  T V  ++  +P +L             
Sbjct: 303 NPSILKVLHGAREDIRWLQK--DFSLYVVNFFDTGVALQTLHMPHSLAFA---------- 350

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  +  FC+ + ++     +      +      Y + D      ++ RL+ L 
Sbjct: 351 -------VDHFCQVKLNKKYQTADWRVRPLS-AEMVHYARQDTHFLLYVYDRLKALL 399


>gi|146099475|ref|XP_001468653.1| exosome subunit rrp6p homologue [Leishmania infantum]
          Length = 743

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 31/177 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E              Y+      L      +    + DC+        L     
Sbjct: 254 EIAVDLE----------HHDFYSYQGFTCLMQISTREED-FIVDCLKLRSSMGALAPVFL 302

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  +  V H +  +   L+   +  + +  +  T V  ++  +P +L             
Sbjct: 303 NPSILKVLHGAREDIRWLQK--DFSLYVVNFFDTGVALQTLHMPHSLAFA---------- 350

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  +  FC+ + ++     +      +      Y + D      ++ RL+ L 
Sbjct: 351 -------VDHFCQVKLNKKYQTADWRVRPLS-AEMVHYARQDTHFLLYVYDRLKALL 399


>gi|163867311|ref|YP_001608505.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
 gi|161016952|emb|CAK00510.1| DNA polymerase III epsilon chain [Bartonella tribocorum CIP 105476]
          Length = 235

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 26/145 (17%)

Query: 1   MATLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFD-DHPVELWD--------- 46
           M  +  D ET         + + G C    D  +    F    +    +           
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIG-CVEMVDRYLTGCQFHVYLNPEGVIIPDEVVAIHGL 59

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTL 97
                 ++     ++ E LE     T++AHN+ F+       LK      I +   I TL
Sbjct: 60  TNERLKNEKSFSDIVDEFLEFINGATMIAHNASFDIGFINAELKRVNKPLISVDNIIDTL 119

Query: 98  VLARSNGL--PSALKAVGEALKLSS 120
            +AR      P++L  + +   + +
Sbjct: 120 AMARRKFPMGPNSLDILCKRFGIDN 144


>gi|92114064|ref|YP_573992.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
           DSM 3043]
 gi|91797154|gb|ABE59293.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
           DSM 3043]
          Length = 253

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 44/158 (27%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAEDVCVILFAFGFDDHPV 42
           M  + +D ET                       LT     +Y             D   V
Sbjct: 1   MRQIVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPER------DIDPEAV 54

Query: 43  ELWDCVHDPVMPQVLKEALENT------DVTIVAHNSYFERTVLKACFNL------DIPI 90
           E+    ++ V  + +   + +          +V HN+ F+   +   F L         +
Sbjct: 55  EVHGITNERVADEPVFADIADAFWEYIRGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRL 114

Query: 91  HRWI------CTLVLARSNGLPS--ALKAVGEALKLSS 120
                      TL +AR         L A+ +   + +
Sbjct: 115 GPVADYCSVLDTLAMARKLHPGQRNNLDALCKRYGIDN 152


>gi|304391965|ref|ZP_07373907.1| ribonuclease D [Ahrensia sp. R2A130]
 gi|303296194|gb|EFL90552.1| ribonuclease D [Ahrensia sp. R2A130]
          Length = 383

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 39/196 (19%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             + +D E     T  PI               + L      D    + D + D +  Q 
Sbjct: 21  DYVTVDTEFLRETTFWPI---------------LCLIQIAGPDDE-CIVDPMADGIDLQP 64

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
             E + +T V  V H +  +  ++       +       T V A   G   ++       
Sbjct: 65  FFELMADTSVVKVFHAARQDVEIV-YHLG-GLVPKPLFDTQVAAMVCGYGDSVAYNALVS 122

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +++   ++          K         R     +        Y   DVT  R++++ L+
Sbjct: 123 RITGGVID----------KSSRFTDWARRPLTTKQLD------YALADVTHLRDVYQSLK 166

Query: 177 PLSSKEQELWYLDQTI 192
               K+    ++D+ +
Sbjct: 167 ADLEKKNRKHWVDEEM 182


>gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
 gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
          Length = 1435

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 32/146 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV------ELWDCVHDPVMPQVL 57
           + +D  T    D+   G+     D  + L A    +  V       +    H   M   L
Sbjct: 413 IDLDLATYVVFDVETTGLSS-VYDRIIELAAVKMRNGEVIDTFEAFINPGYHLSAMITEL 471

Query: 58  K----EALEN---------------TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWIC 95
                  L +                D  +VAHN+ F+   L        + +P    I 
Sbjct: 472 TGITDAMLADAPPEAEVMARFAEFSKDTILVAHNASFDMGFLNKTYARLGMPVPDQPVID 531

Query: 96  TLVLARSNGL---PSALKAVGEALKL 118
           TL L+R          L  + +   +
Sbjct: 532 TLELSRLVNPDMRSHRLNVLAKHYGV 557


>gi|82753293|ref|XP_727619.1| 3'-5' exonuclease [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483550|gb|EAA19184.1| 3'-5' exonuclease, putative [Plasmodium yoelii yoelii]
          Length = 410

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 51/167 (30%), Gaps = 21/167 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLK 58
             + +D E             K   +  V +      D  + ++D           + LK
Sbjct: 71  KIIGLDIE-----------GYKIGRNGTVSIIQICAKD--IYIFDLYKCDNSYLFAKYLK 117

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E  EN ++  V H+   + ++L   +N+++       T + A +  L  + K +   +  
Sbjct: 118 ELFENKNIIKVTHDCREDCSILFNQYNINLN--NIFDTQI-AYNLILKKSKKEL-YQISY 173

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                +                 L ++       + +    Y   DV
Sbjct: 174 DDLLYKCLFLNNNHKIYFHKIISLDNKIYLKRPIS-KELIHYAVQDV 219


>gi|262212371|gb|ACY35802.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 66/275 (24%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
             T   R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKTGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|328872117|gb|EGG20484.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 347

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 54/209 (25%), Gaps = 31/209 (14%)

Query: 26  EDVCVILFAFGFDDHPVELWDCV--HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
           ++  V L   G  +  V ++D +          LK+ LE+  +  + H+   +  +L   
Sbjct: 157 KNGEVSLVQIGLKNGRVFIFDIMVLGHNAFKHGLKDLLESKIILKIVHDCRRDSEIL--Y 214

Query: 84  FNLDIPIHRWICTLVLARSN------GLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
               + +       +            +P     + E   L + K    +  I    KG 
Sbjct: 215 HRYQVTLDHVYDIQIAHALLQKKKEGNVPIRRFGLAELTDLYAPKPYAQQA-INVKHKGR 273

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
                                +YC  DV V   I+  L P                    
Sbjct: 274 DLFKNNLDIWRQRPLP-PTIIDYCALDVIVLLPIYNILTPQLH----------------S 316

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLT 226
             D        +    + +     +  L 
Sbjct: 317 PFDKKFLK---KNFREQLSYFKDSIRQLF 342


>gi|213964497|ref|ZP_03392697.1| ribonuclease D [Corynebacterium amycolatum SK46]
 gi|213952690|gb|EEB64072.1| ribonuclease D [Corynebacterium amycolatum SK46]
          Length = 433

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 60/205 (29%), Gaps = 35/205 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E              Y  D    L  F        L D         V   ++ N
Sbjct: 45  LAVDTE----------RASAYRYDDRAFLLQFRRRGAGTFLIDPEDGRKAMAVFGSSVNN 94

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
             +T + H ++ +   L A   L +   + I T +  R  GL    L A+ E L      
Sbjct: 95  --LTWIIHAAHSDLPCLAA---LGLYPTKVIDTELAGRLLGLERVNLAALTERL------ 143

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                                D +       W    +Y   DV +  E+ + L    ++ 
Sbjct: 144 ---------LGVGLAKGHGREDWSTRPLPADW---LDYAALDVELLIELAEVLCQALTEL 191

Query: 183 QELWYLDQTINDRGYCVDVALAHTL 207
             L +L+Q    R   ++      L
Sbjct: 192 DRLEWLEQECE-RELAINRKYLDGL 215


>gi|212635098|ref|YP_002311623.1| ribonuclease D [Shewanella piezotolerans WP3]
 gi|212556582|gb|ACJ29036.1| Ribonuclease D [Shewanella piezotolerans WP3]
          Length = 369

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 57/205 (27%), Gaps = 41/205 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L ID E     T                   + L    +D   + L D +       +
Sbjct: 24  KLLVIDTEFVRTRTYY---------------ARLGLIQ-AYDGKTLALIDPLAV-TNLSL 66

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               L ++ +  + H+   +  V     N     ++   + + A   G+           
Sbjct: 67  FWALLTDSSIIKLLHSCSEDLEVFAK--NGACQPNKLFDSQIAAGLCGMG---------Y 115

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            L   K+ E   L     KGE+      R     +        Y   DV    E++ +L 
Sbjct: 116 GLGYAKLVEQ-TLDITLDKGESRTDWLKRPLSEAQ------LNYAANDVYYLYELYPQLV 168

Query: 177 PLSSKEQELWYLDQTIN-DRGYCVD 200
                +  L ++ +         +D
Sbjct: 169 DKLESQGRLDWVYEDGERMTQGRLD 193


>gi|288556130|ref|YP_003428065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pseudofirmus OF4]
 gi|288547290|gb|ADC51173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus pseudofirmus OF4]
          Length = 940

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 49/147 (33%), Gaps = 31/147 (21%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWD--------- 46
             + +D ET          + + G     E+  +I  FA  F +  VE+           
Sbjct: 4   RFIVVDVETTGHSVAKGDRIIQIGA-VVIENGEIIERFA-SFVNPEVEIPPFIEELTGIN 61

Query: 47  ---CVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL 97
                H P   +    L    EN  V  VAHN  F+ + LK  F       P  +   T+
Sbjct: 62  QAMVEHAPTFKELAVELLPLFEN--VGFVAHNVPFDLSFLKNQFELIGEKFPKMKCYDTV 119

Query: 98  VLARSNGL---PSALKAVGEALKLSSQ 121
            L+R          L  +  +L LS  
Sbjct: 120 ELSRMLLPKEESYKLGHLAFSLGLSHD 146


>gi|300864534|ref|ZP_07109398.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337492|emb|CBN54546.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 880

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 55/194 (28%), Gaps = 37/194 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-----VELWDCVHDPVMPQVL 57
            ++ D E                 +  + L     D +        + D +  P + +  
Sbjct: 22  IIWADTE----------VADWQTPNPRLSLIQILADPNDLTGDFAYILDVLDKPELVENF 71

Query: 58  KE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  + N  +  V HNS ++                  CT           +L    E L
Sbjct: 72  IDLIMANPTIEKVFHNSSYDL----RYLG-KTQAKNVTCT----WKIAQKLSL----ERL 118

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRL 175
           ++ ++++   K L A  CK        ++     R    +   +Y K D   T  +    
Sbjct: 119 QVPNRQL---KTLAAGLCKFTEIN-KQEQTSDWGRRPLTQKQLDYAKMD---TVYLAGVH 171

Query: 176 EPLSSKEQELWYLD 189
             L     +   + 
Sbjct: 172 RRLLELTNQKHLII 185


>gi|262342099|gb|ACY54560.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 65/275 (23%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRRAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|241760851|ref|ZP_04758940.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753179|ref|YP_003226072.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283856222|ref|YP_162013.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374470|gb|EER63931.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552542|gb|ACV75488.1| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|283775217|gb|AAV88902.2| 3'-5' exonuclease [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 209

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 50/185 (27%), Gaps = 34/185 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ-VLKEALE 62
           + +D ET         G+  + +   + +           L     D       LK  L 
Sbjct: 24  VAVDTET--------MGLITHRD--RLCVVQISDGKGDQHLVRFAPDSDYSAPNLKAVLS 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           + +   + H   F+   +       +      CT + ++          LK +   L   
Sbjct: 74  DPNRLKIYHFGRFDIAAILYYLG--VMAAPVYCTKIASKLVRTYTDRHGLKELVREL--- 128

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K +           + +       EY   DV     + ++L+   
Sbjct: 129 ---------LGQDISKQQQCSDWGGEKLSDAQ------REYAASDVRFLHGLKEKLDIRL 173

Query: 180 SKEQE 184
            +E+ 
Sbjct: 174 KREKR 178


>gi|40217899|gb|AAR82868.1| hypothetical protein [Campylobacter jejuni]
 gi|41058386|gb|AAR99163.1| hypothetical protein [Campylobacter jejuni]
 gi|62868454|gb|AAX83128.1| Cj1132c [Campylobacter jejuni subsp. jejuni 81-176]
 gi|75911803|gb|ABA29493.1| hypothetical protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|75911830|gb|ABA29515.1| hypothetical protein [Campylobacter jejuni]
 gi|75911840|gb|ABA29523.1| hypothetical protein [Campylobacter jejuni]
          Length = 276

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 46/201 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 91  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 150

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 151 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 200

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD----QTINDRG 196
                    +        EYC+ DV  T  +F + E + +   E  Y+D         R 
Sbjct: 201 --------FYENELEKIYEYCESDVLNTYMLFLKYELIKANVSEEDYVDFLSYMRDFLRE 252

Query: 197 YCVDVALAHTLNQIVDVERTK 217
              D +      +  + E +K
Sbjct: 253 KKSDRSYTEVFAKACESEISK 273


>gi|294085203|ref|YP_003551963.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664778|gb|ADE39879.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 255

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 38/162 (23%)

Query: 1   MATLFIDFETRSPID-----LTKCG-------------ICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET          + + G             +  Y   +  +       D+  
Sbjct: 1   MREIALDTETTGINPRDGHRIIEIGCLELLHHLPTGNKLHIYINPEREI-------DEGA 53

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVA------HNSYFERTV----LKACFNLDIPIH 91
           V++       +  + L   + +  +  +       HN+ F+       L       +P+ 
Sbjct: 54  VKVHGLTSAFLADKPLFADIVDEFLAFIGGDQMVIHNASFDMGFLNAELARLDRPVLPMD 113

Query: 92  RWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIA 131
           R + TL++AR       + L A+    ++ +   +    LI 
Sbjct: 114 RAVDTLMMARKKFPGAQANLDALCRRFEIDNGHRDLHGALID 155


>gi|312113633|ref|YP_004011229.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
 gi|311218762|gb|ADP70130.1| ribonuclease D [Rhodomicrobium vannielii ATCC 17100]
          Length = 404

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 63/233 (27%), Gaps = 37/233 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E        +    +      + L           +    +           + 
Sbjct: 47  YVTVDTE------FMRQTTYR----PKLCLIQMAAPGIEAVVDPLPNLD--LSPFYALMA 94

Query: 63  NTDVTIVAHNSYFER-TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           NT V  V H +  +   V +    + +P+     T + A + G          +      
Sbjct: 95  NTAVVKVFHAARQDIEIVWQEAGVIPMPL---FDTQIAAMALG-----HGDAISYG---- 142

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L+ +  K    +     +        +   EY  GDVT  R+++ +L+    +
Sbjct: 143 ------ALVKKLLKKNHDKTYQAIDWCQRPLGPKQL-EYALGDVTYLRDVYAKLKQRLEQ 195

Query: 182 ----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                     +    + + Y  D A A    + +  +       +  L     
Sbjct: 196 TGREPWLEEEVAVLTDPKTYAFDPADAWKRLK-LGGKSRTARSIIMELAAWRE 247


>gi|227495500|ref|ZP_03925816.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
 gi|226831047|gb|EEH63430.1| ribonuclease D [Actinomyces coleocanis DSM 15436]
          Length = 402

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 67/235 (28%), Gaps = 45/235 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E          G  +Y+    ++          V  +       +P      L  
Sbjct: 40  VAIDVE-------RAVG-YRYSHRAYLVQI----RREDVGTFLIDSG-TLPD--LSILNE 84

Query: 64  T--DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEA-LKLS 119
              +   + H++  +   L     L+IP      T++ AR  G     L AV E  L ++
Sbjct: 85  PLNNAVWILHDADQDIASL-RMCGLEIP--ELFDTMLAARLLGFQRFGLAAVCEQILGVT 141

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                R  P      R +  Y   DV +  ++++++    
Sbjct: 142 LDKNHQSDDW-------------STRPLP------RPWLRYAALDVELLTDLYEKMSHSL 182

Query: 180 SKEQELWYLDQTI----NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            K     +  Q             D      L  +  +   +    LE L     
Sbjct: 183 FKANRWEWAQQEFHNILTRPTKKPDSEPWRNLRGMGKIRSRRHLAILEELWKTRE 237


>gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           bovis PG45]
          Length = 1458

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 38/147 (25%), Gaps = 38/147 (25%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED---------------------VCVILFAFGF 37
            +  D ET         + + G     +D                       +       
Sbjct: 424 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKTTQFFIKPKDKIGSFTTELTGITQQM 483

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
            D               + + + L       +AHN+ F+   LK      N+  P    I
Sbjct: 484 LDSKGLYI-----KEGLEKIYDCL--DGKIAIAHNAKFDFNFLKEQFRLNNMQFPRVTVI 536

Query: 95  CTLVLARSNGLP---SALKAVGEALKL 118
            TLV +R          L+ V   L +
Sbjct: 537 DTLVASRIGFPGYKRHKLEDVASRLGV 563


>gi|187932792|ref|YP_001886212.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720945|gb|ACD22166.1| DNA polymerase III subunit epsilon [Clostridium botulinum B str.
           Eklund 17B]
          Length = 309

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 24/131 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICK-YAEDVCVI---------------LFAFGFDD-HPVE 43
           M  + IDFET +    + C I     +D  +I                   G     P  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIIEEVHHLIKPKEMRFMPINIGIHGIRPRM 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           + D +    + + +K    N +  ++AHN+ F+ +VL+     +NL++P  ++ICT+ L+
Sbjct: 61  VQDELEFDKVWEKIKHYF-NKN-LVIAHNASFDISVLRNTLELYNLEMPSFQYICTMKLS 118

Query: 101 RSNGLPSALKA 111
           R     S L  
Sbjct: 119 R--NFYSNLDN 127


>gi|110802120|ref|YP_698713.1| DNA polymerase III subunit epsilon [Clostridium perfringens SM101]
 gi|110682621|gb|ABG85991.1| exonuclease family protein [Clostridium perfringens SM101]
          Length = 302

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 25/151 (16%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDP 51
           M  + IDFET          I LT     K  E+    +      F    + +     + 
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
                    + + +K+ +      ++AHN+ F+ +VL+     +++  P   + CT+V+A
Sbjct: 61  VENERTFNEIWKEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 101 ---RSNGLPSALKAVGEALKLSSQKMEEGKE 128
                +     L  V EAL         G++
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFEFSHHHAGED 149


>gi|303229201|ref|ZP_07316002.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303230531|ref|ZP_07317286.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514814|gb|EFL56801.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516214|gb|EFL58155.1| DNA polymerase III, epsilon subunit domain protein [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 209

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 22/140 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKY-AEDVCVILFAFG--------FDDHPVELWDCVHDPV 52
             + +DFET +    + C +     E+  +   A+         FD   +E+       V
Sbjct: 3   DFVALDFETANKYKNSACSLAVITVENGQITKKAYSLIKPPFMSFDPECIEIHGIEPKEV 62

Query: 53  MPQ----VLKEAL-EN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
           + +     L  A+ EN      ++AHN+ F+  VL+A    +N+  P   + CT+ ++R+
Sbjct: 63  LHEKTFDQLWPAIYENHLKGKIMIAHNAKFDMNVLRATLDYYNIPWPELDYACTVKISRA 122

Query: 103 NGL---PSALKAVGEALKLS 119
                    L  +   L + 
Sbjct: 123 VWPDLVNHKLNTMAAYLGVE 142


>gi|221506253|gb|EEE31888.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
           gondii VEG]
          Length = 1353

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 55/223 (24%), Gaps = 30/223 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E              Y       L      +    + D         VL     N
Sbjct: 485 VAIDLE--------HHSFHSYR--GFTCLLQLSTREKD-YIIDPFALFDHLHVLNTITAN 533

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEAL-KLSS 120
             +  + H +  +   L+   +  + +     T V AR+  +P   +L  + +    + +
Sbjct: 534 PKILKIFHGADSDIIWLQR--DFSVYVVNMFDTCVAARALAVPGGASLANLLQTYCHVEA 591

Query: 121 QKMEEGKELIARFCKGETHECLY-------------DRNKPNHREAWRLFGEYCKGDVTV 167
            K  +  +   R    E                        +  E           D   
Sbjct: 592 NKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLLSKPELGAALSPSAVTDFDG 651

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVD-VALAHTLNQ 209
           T E+ +  + +     E               D  A A  L +
Sbjct: 652 TLEVTEAGKQIMMFTMERSRDVCLKLHVEAPFDAPAEAEALLK 694


>gi|221485391|gb|EEE23672.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
           gondii GT1]
          Length = 1353

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 55/223 (24%), Gaps = 30/223 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E              Y       L      +    + D         VL     N
Sbjct: 485 VAIDLE--------HHSFHSYR--GFTCLLQLSTREKD-YIIDPFALFDHLHVLNTITAN 533

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEAL-KLSS 120
             +  + H +  +   L+   +  + +     T V AR+  +P   +L  + +    + +
Sbjct: 534 PKILKIFHGADSDIIWLQR--DFSVYVVNMFDTCVAARALAVPGGASLANLLQTYCHVEA 591

Query: 121 QKMEEGKELIARFCKGETHECLY-------------DRNKPNHREAWRLFGEYCKGDVTV 167
            K  +  +   R    E                        +  E           D   
Sbjct: 592 NKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLLSKPELGAALSPSAVTDFDG 651

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVD-VALAHTLNQ 209
           T E+ +  + +     E               D  A A  L +
Sbjct: 652 TLEVTEAGKQIMMFTMERSRDVCLKLHVEAPFDAPAEAEALLK 694


>gi|237835553|ref|XP_002367074.1| exosome component 10, putative [Toxoplasma gondii ME49]
 gi|211964738|gb|EEA99933.1| exosome component 10, putative [Toxoplasma gondii ME49]
          Length = 1353

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 55/223 (24%), Gaps = 30/223 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E              Y       L      +    + D         VL     N
Sbjct: 485 VAIDLE--------HHSFHSYR--GFTCLLQLSTREKD-YIIDPFALFDHLHVLNTITAN 533

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEAL-KLSS 120
             +  + H +  +   L+   +  + +     T V AR+  +P   +L  + +    + +
Sbjct: 534 PKILKIFHGADSDIIWLQR--DFSVYVVNMFDTCVAARALAVPGGASLANLLQTYCHVEA 591

Query: 121 QKMEEGKELIARFCKGETHECLY-------------DRNKPNHREAWRLFGEYCKGDVTV 167
            K  +  +   R    E                        +  E           D   
Sbjct: 592 NKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLLSKPELGAALSPSAVTDFDG 651

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVD-VALAHTLNQ 209
           T E+ +  + +     E               D  A A  L +
Sbjct: 652 TLEVTEAGKQIMMFTMERSRDVCLKLHVEAPFDAPAEAEALLK 694


>gi|58580665|ref|YP_199681.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622598|ref|YP_449970.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|166710938|ref|ZP_02242145.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|58425259|gb|AAW74296.1| DNA polymerase III epsilon chain [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366538|dbj|BAE67696.1| DNA polymerase III epsilon chai [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 244

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 43/155 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYAE---DVC-----VILFA 34
           M  + +D ET          +                   +Y +   D       V    
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLD 87
             F               + +     +      ++ HN+ F+   L          +   
Sbjct: 61  LEFLADK----PLF--GEVVEEFLAYI--DGAELIIHNAAFDLGFLDNELALLGDHYGRI 112

Query: 88  IPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS 120
           +     + TL++A  R  G  ++L A+ + L + +
Sbjct: 113 VERATVVDTLMMARERYPGQRNSLDALCKRLGVDN 147


>gi|167947000|ref|ZP_02534074.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 116

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 17/69 (24%), Gaps = 20/69 (28%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV----------MP 54
             D ET S   +             ++  +F  +          H             + 
Sbjct: 52  AFDTETTSLDYM----------QAEIVGVSFAVEAGRAAYLPLAHRYPGAPDQLDRDWVL 101

Query: 55  QVLKEALEN 63
             LK  LE+
Sbjct: 102 AQLKPLLED 110


>gi|296536098|ref|ZP_06898231.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
           49957]
 gi|296263574|gb|EFH10066.1| DNA polymerase III, epsilon subunit [Roseomonas cervicalis ATCC
           49957]
          Length = 241

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 32/147 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV----- 56
             L +D ET     LT   + + A  V ++                  +  +P+      
Sbjct: 3   RALVLDTETTGFDPLTGDRVLEVAA-VEIVNL---VPTGRHFHMLIDPERDVPEEATKVH 58

Query: 57  ---------------LKEALEN--TDVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
                          +  A+ +   D  I+AHN+ F+       LK   +  +   R + 
Sbjct: 59  GFTREMLIGKPKFAEIAPAMLDFLGDDPIIAHNAPFDFGFLDWELKKAGHKALDRARMVD 118

Query: 96  TLVLA--RSNGLPSALKAVGEALKLSS 120
           TL LA  R  GLP++L A+     + +
Sbjct: 119 TLALAKKRFPGLPNSLDALCRRYGIDN 145


>gi|302525782|ref|ZP_07278124.1| ribonuclease D [Streptomyces sp. AA4]
 gi|302434677|gb|EFL06493.1| ribonuclease D [Streptomyces sp. AA4]
          Length = 420

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 34/191 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E        +    +Y     ++      +     L D +        L++ L +
Sbjct: 56  VAVDTE--------RASGYRYWPKAYLV--QLRREGSGTVLIDPIALADDLAPLRDVLND 105

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
           T+   V H +  +   L     L++       T +  R  G    AL  + E L      
Sbjct: 106 TE--WVLHAASQDLPCLAE---LNLRPRSLFDTELAGRLAGYERVALGTLVELL------ 154

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
              G  L       E      D +K      W     Y   DV +  E+ ++LE   + +
Sbjct: 155 --LGYTL-------EKGHSAADWSKRPLPVDW---LNYAALDVELLNELREKLEAELTAQ 202

Query: 183 QELWYLDQTIN 193
            +L +  Q   
Sbjct: 203 GKLEWARQEFE 213


>gi|317150544|ref|XP_001824106.2| DNA polymerase gamma [Aspergillus oryzae RIB40]
          Length = 1107

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 54/480 (11%), Positives = 116/480 (24%), Gaps = 86/480 (17%)

Query: 172 FKRLEPLSSKEQELWYLDQ-TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +                DQ    +    V   +       +  +R  +  +L        
Sbjct: 507 YPLTWSDKYGWTFKVPRDQVKKFENQPVVLCDMTEEKIAELRDDRRHVYFKLPHKDGPQA 566

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
                L K     F    L          +  L  N           + R R     V+ 
Sbjct: 567 RCVNPLAKGYMQYFERGTL---SSQYALAKEALEMNAS----CSYWISARDRIMGQMVVY 619

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            + + ++ +++   R                    PQ +P  + +   ++        + 
Sbjct: 620 KDEVQKSASNNAESRTGFIL---------------PQVIPMGTITRRAVENTWLTASNAK 664

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            +       +   +++ + A  G   V AD+   E   +A + G+               
Sbjct: 665 EN------RVGSELKAMIKAPPGYVFVGADVDSQEL-WIASLIGDAQFQIHGGNAIGFMT 717

Query: 411 TTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
              +++        T       R   KV      Y  G K    +      +++      
Sbjct: 718 LEGSKAAGTDMHSRTAKILGISRNDAKVFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQE 777

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                 +E + A    R + ++       + F+    E      R +   +         
Sbjct: 778 VATKLYQETKGARTTRRILSDSPFWRGGTESFVFNKLEEFADQERPRTPTL--------- 828

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                        A  RR +        + N  +       L    +      ++   R+
Sbjct: 829 -------GAGITEALMRRFINRGSFMTSRINWAIQSSGVDYLHLLII-----AMDYLIRR 876

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                                                + +TVHDEI     D D++ A++
Sbjct: 877 FNIAA-------------------------------RLAITVHDEIRYLVKDEDKYRAAL 905


>gi|66394968|ref|YP_240955.1| ORF019 [Staphylococcus phage G1]
 gi|62636990|gb|AAX92101.1| ORF019 [Staphylococcus phage G1]
          Length = 447

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/297 (8%), Positives = 53/297 (17%), Gaps = 84/297 (28%)

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L    ++  L+         +       +    +   N         L   Y  GD  V
Sbjct: 155 GLSDYAKSYTLN----TAINLINEYRDVKDVVNDIDGGNFNYDWFPIELMHPYASGDTDV 210

Query: 168 TREIFKRLEPLSSKEQELWYL-------------DQTINDRGYCVDVALAHTLNQIVDVE 214
            R I+  +     ++     +                I   G   D+      ++  + E
Sbjct: 211 CRRIYCDVIKKLKEQDRPKSMHLLEVNYPRLTKSLARIESNGLYCDLDYMKENDESYESE 270

Query: 215 RTKLDQELESLTYGLVSS----------------------------------------SR 234
             K    +                                                    
Sbjct: 271 MAKNHATMREHWAVKEFEEYQYNLYQMALEEHEKKPKDRDKDIHQYRDKFKDGKWMFSPS 330

Query: 235 CLEKLKTWLFLETG--LHLED---LTETTCQRVLS----------------------SNK 267
             +     ++   G  L  +      +     V                          K
Sbjct: 331 SGDHKGRVIYDILGIQLPYDKEYVKEKPFNANVKEADLTWQDYKTDKKAIGYALDNLELK 390

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
               + +++                 L+  +N   R          + T R S    
Sbjct: 391 DDVKELLELLKYHASIQTKRNSFTKKLLNMINKQKRTLHGSFSETGTETSRLSSSNP 447


>gi|298293766|ref|YP_003695705.1| DNA polymerase III subunit epsilon [Starkeya novella DSM 506]
 gi|296930277|gb|ADH91086.1| DNA polymerase III, epsilon subunit [Starkeya novella DSM 506]
          Length = 232

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 40/149 (26%), Gaps = 36/149 (24%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF--GFDDHPVELWDCVHDPVMP---- 54
           M  + +D ET     LT   +        +                     +  MP    
Sbjct: 1   MREIVLDTETTGLNPLTGDRLV------EIGCVEIFNRIPTGQTFHVYLNPERDMPLEAF 54

Query: 55  ------------QVLKEALENTDVTIVA------HNSYFERTV----LKACFNLDIPIHR 92
                       + L  A+ +  +  +A      HN+ F+       L       +   R
Sbjct: 55  NVHGLSAEFLSDKPLFAAVVDDFLAFIAGDPLVIHNAAFDIGFINAELARLARPALTFDR 114

Query: 93  WICTLVLARSNGLPSA--LKAVGEALKLS 119
            + TL LAR     ++  L  +     + 
Sbjct: 115 VVDTLSLARRRHPGASNRLDDLMNRYGID 143


>gi|296226151|ref|XP_002758779.1| PREDICTED: DNA polymerase theta-like [Callithrix jacchus]
          Length = 66

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 620 AGYDIVLTVHDEIVCETPDTDEFNASMLYH-LMTSNPSWAKGLPLKA 665
            G   +L +HDE++ E  + D    + +    M S    +  L LK 
Sbjct: 6   RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVKLSVKLKLKV 52


>gi|210147550|ref|NP_957383.2| exosome component 10 [Danio rerio]
          Length = 899

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 43/151 (28%), Gaps = 24/151 (15%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L      +    + D +       +L E   +  +  V H +  +   L+  F   + + 
Sbjct: 326 LMQISTREED-FIIDTLELRSEMYILNETFTDPAIVKVFHGADSDIEWLQKDFG--LYVV 382

Query: 92  RWICTLVLARSNGLPS-ALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
               T   AR   L   +L  + +    +SS K  +  +                R  P 
Sbjct: 383 NMFDTHHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADW-------------RIRPLP- 428

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                    +Y + D      ++ R+     
Sbjct: 429 -----DEMLKYAQADTHYLLYVYDRVRADLF 454


>gi|166240642|ref|XP_645586.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
 gi|165988709|gb|EAL71650.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
          Length = 1195

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 47/179 (26%), Gaps = 34/179 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E             +  +    +            L D +       +L +   
Sbjct: 267 EIAIDLE---------HHSYRTYQGFTCL-MQISTRSED-FLIDTLLLRSHIHMLNQVFT 315

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEAL-KLSS 120
           N  +  V H S  +   L+  F + I       T   +R      ++L  + +    + +
Sbjct: 316 NPSIVKVLHGSDSDIKWLQRDFGVYI--VNMFDTGQASRILEYPSASLAFLLKFYCAIDA 373

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K  +  +                R  P          +Y + D      I+ RL    
Sbjct: 374 NKKYQLADW-------------RIRKLP------EEMIKYAREDTHYLLYIYDRLRNEL 413


>gi|198458527|ref|XP_002138553.1| GA24836 [Drosophila pseudoobscura pseudoobscura]
 gi|198136373|gb|EDY69111.1| GA24836 [Drosophila pseudoobscura pseudoobscura]
          Length = 830

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 49/178 (27%), Gaps = 36/178 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            + +D E    I+L   G         + L   G       L+D    P M     LK  
Sbjct: 566 VVSLDCE---GINLGLKG--------EITLIEIGTARGEAFLFDVQSCPAMVTDGGLKTV 614

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-----------AL 109
           LE+  V  V H+   +   L       I +     T                      +L
Sbjct: 615 LEHEQVIKVIHDCRNDAANL--YLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISL 672

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            ++ E        +++  + I R  +    +    R              Y  GDV V
Sbjct: 673 NSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTR----------EMMLYAAGDVLV 720


>gi|195154607|ref|XP_002018213.1| GL17589 [Drosophila persimilis]
 gi|194114009|gb|EDW36052.1| GL17589 [Drosophila persimilis]
          Length = 831

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 49/178 (27%), Gaps = 36/178 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            + +D E    I+L   G         + L   G       L+D    P M     LK  
Sbjct: 567 VVSLDCE---GINLGLKG--------EITLIEIGTARGEAFLFDVQSCPAMVTDGGLKTV 615

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-----------AL 109
           LE+  V  V H+   +   L       I +     T                      +L
Sbjct: 616 LEHEQVIKVIHDCRNDAANL--YLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISL 673

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            ++ E        +++  + I R  +    +    R              Y  GDV V
Sbjct: 674 NSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTR----------EMMLYAAGDVLV 721


>gi|198433586|ref|XP_002125927.1| PREDICTED: similar to GK24652 [Ciona intestinalis]
          Length = 1122

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 74/583 (12%), Positives = 165/583 (28%), Gaps = 84/583 (14%)

Query: 100  ARSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCK--------GETHECLYDRNKP 148
            +    L      LK +G++++   +K++  ++L     +            +   +   P
Sbjct: 478  SYLLPLDYNTEELKFLGKSIRKERKKLDLIEKLNETANRLPLVKPHMPGAPKWYSELCVP 537

Query: 149  NHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWYLDQTINDRGYCV-DV 201
               + W+           VT  + + +                   DQT       V D 
Sbjct: 538  EKDQNWKPGATLLSTLTRVTPRLLRLMWQGCPLYHVKDYGWGYLCPDQTAPPVEKKVEDE 597

Query: 202  ALAHTLNQIVDVERTKL-----DQELESLTYGLVSS-----SRCLEKLKTWLFLETGLHL 251
             L   ++Q    ++         + +E L  G             + + + L  +   H+
Sbjct: 598  DLLKEVDQESWNKQEVQSNHTPAENIEGLPDGYTFHRLPHAEGAGKNVGSPLSRDFISHV 657

Query: 252  EDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFL 311
            E    ++    L + + L  +  ++ +    + +                 R+   +   
Sbjct: 658  ESGLLSSY-NPLDALRCL--EINKITSYWRSSQK-----------------RVLNQIVVE 697

Query: 312  GASRTGRWSGCVFPPQN---------LPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
             A+   R         N         +P+         + +  +  + ++    L  I  
Sbjct: 698  VANDKRRDCNNTPNEFNNKDMAYSAIVPQAIVCGAVSRRAVERVWLTASN--PQLDRIGS 755

Query: 363  CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             +++ V A  G   V AD+   E  + + +       +   T          +       
Sbjct: 756  ELKAMVQAPPGFCFVGADVDSQELWIASLLGDASSAKEHGCTALSWMTLRGNKKEGTDLH 815

Query: 423  QVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
              T       R   KV      Y  G K+  +       +L+    + K N     +   
Sbjct: 816  STTAASIGISRDQAKVFNYGRMYGAGKKSSLRSLMQFNKDLSREECIAKVNK---LYGIT 872

Query: 479  ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538
            +   ++         I+   I    E +   +      V+ + N  ++A   T    +  
Sbjct: 873  KGEVQYKLSRDALWIIQKTGIELNSEAMTSGY-ASFDDVTLIQNVANEASNYTARINRND 931

Query: 539  IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598
            +   RR    +          +           D   +R+        L      G  +T
Sbjct: 932  LVCGRRWHGGIESHMFNKVEEISNSKTPKTPALDCKISRA--------LEPGKVNGNFVT 983

Query: 599  ---ENIVQAVSRDIL------AEGMMNATKAGYDIVLTVHDEI 632
                 +VQ+ + D L         ++   K     VL++HDE+
Sbjct: 984  TRMNWVVQSSAVDYLHLLLVSMRWLIEKYKLDCRFVLSIHDEV 1026


>gi|167600409|ref|YP_001671909.1| DNA polymerase part III [Pseudomonas phage LUZ24]
 gi|161168272|emb|CAP45437.1| DNA polymerase part III [Pseudomonas phage LUZ24]
          Length = 93

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 14/89 (15%)

Query: 596 KLTENIVQAVSRDILAEGMMNATKAGYDI------VLTVHDEIVCETPDTDEFNASMLYH 649
           K    ++QA    ++   M+   +    +      VL +HDE   E    D      L  
Sbjct: 4   KALNTLLQAAGAIVMKWAMVLLDERVRRLNLRAWKVLDIHDEGQWECHPED---LKALRE 60

Query: 650 LMTSNPSWAKGL-----PLKAEGYESKRY 673
            M      A  L     PL ++    + +
Sbjct: 61  QMEICVRDAGELLGVNCPLASDSIAGRSW 89


>gi|145634613|ref|ZP_01790322.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
 gi|145268158|gb|EDK08153.1| peptidyl-tRNA hydrolase [Haemophilus influenzae PittAA]
          Length = 362

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 72/239 (30%), Gaps = 35/239 (14%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           +D   V L D        P      L N  V  + H+   +  V    F  D      I 
Sbjct: 37  YDGERVSLIDPLAITDFSP--FVALLANPKVLKILHSCSEDLLVFLQEF--DQLPRPMID 92

Query: 96  TLVLARSNGLPSA--LKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           T ++AR  GL ++  L  +  + L +   K       I R                    
Sbjct: 93  TQIMARFIGLGASAGLAKLAQQYLNVEIDKGATRTNWIKRPLS----------------- 135

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
              +  +Y  GDV     ++  LE   +K      +          + +A  H L +   
Sbjct: 136 --DIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCE-----LALAKTHKLQERDS 188

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
            +          L    +S  R L + +  + +E  L L  + ++     L    K  P
Sbjct: 189 EKAYLDIPNAWKLNPLELSRLRILAQWRQNVAIERDLALSYIVKS---EHLWKVAKNNP 244


>gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 232

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 30/148 (20%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   + +Y   D  +   A       
Sbjct: 1   MRQIILDTETTGLDPAQGHRIIEVAAVEMVNRRLTGNHLHRYVNPDRDIDAGAMQVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI---PIHRWI 94
            E   D      + +   + +      ++ HN+ F+   L        + +         
Sbjct: 61  PEFLQDKPRFGDIAREFVDFI--DGAELIIHNAPFDVGFLNMELRLLGMPLLATCCGGVT 118

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSS 120
            TL +A++        L A+ +   + +
Sbjct: 119 DTLAMAKALHPGQRNNLDALCKRYAVDN 146


>gi|50286743|ref|XP_445801.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525107|emb|CAG58720.1| unnamed protein product [Candida glabrata]
          Length = 737

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 52/177 (29%), Gaps = 30/177 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E              Y   VC++  +    D    + D +      ++L E   
Sbjct: 234 EIAVDLE--------HHDFRSYYGLVCLMQISTRTQD---YIVDTIALRDDLKMLNEVFT 282

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  +T V H ++ +   L+    L I       T   +++ GLP        +L    +K
Sbjct: 283 NPLITKVFHGAFMDIIWLQRDLGLYI--VSLFDTFHASKALGLPKH------SLAYLLEK 334

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
               K       K         R         +    Y + D      IF ++    
Sbjct: 335 YANFKT-----SKKYQLADWRRRPLS------KAMMAYARADTHFLLNIFDQMRNGL 380


>gi|329889237|ref|ZP_08267580.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844538|gb|EGF94102.1| exonuclease family protein [Brevundimonas diminuta ATCC 11568]
          Length = 211

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 25/141 (17%)

Query: 1   MATLFIDFETR-----SPIDL----TKCGICKYAEDVCVIL-------FAFGFDD-HPVE 43
           M  + IDFET      SP  +       G+ +  E   +         F   F    P +
Sbjct: 8   MHAVAIDFETANEQRASPCSIGLAWINDGVIESVEHHYIRPPGMRFASFNIAFHGIGPEQ 67

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           + D    P +   +   LE   V   AHN+ F+ +V++     + L  P   ++CT+ LA
Sbjct: 68  VEDAEEFPAVLAAIAPRLEGRTVL--AHNAAFDVSVIRNTCDHYGLTYPEFDYLCTVKLA 125

Query: 101 RSN---GLPSALKAVGEALKL 118
           + +        L  V   L +
Sbjct: 126 QISWPEFPSHKLNNVCAELGV 146


>gi|222085490|ref|YP_002544020.1| ribonuclease D [Agrobacterium radiobacter K84]
 gi|221722938|gb|ACM26094.1| ribonuclease D [Agrobacterium radiobacter K84]
          Length = 381

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 29/189 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E           + +      + L         V +        + +   E + N
Sbjct: 21  ITIDTE----------FLRETTFWPELCLIQMASPTTEVLVDPLAKGLDL-KPFFELMAN 69

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
           T V  V H +  +  ++    N  +  H    T V A   G      +V     +S  K 
Sbjct: 70  TAVMKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFG---DSVSYDQLVSRIKN 124

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
            +         K         R     +        Y   DVT  R+++  L+    +E 
Sbjct: 125 IQI-------DKSSRFTDWSRRPLSEKQLD------YALADVTHLRDVYLSLKEQLEREG 171

Query: 184 ELWYLDQTI 192
              +L + +
Sbjct: 172 RASWLLEEM 180


>gi|148926145|ref|ZP_01809830.1| hypothetical protein Cj8486_1171c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845316|gb|EDK22409.1| hypothetical protein Cj8486_1171c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 276

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 46/203 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 91  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 150

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 151 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 200

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD----QTINDRG 196
                    +        EYC+ DV  T  +F + E + +   E  Y+D         R 
Sbjct: 201 --------FYENELEKIHEYCESDVLNTYMLFLKYELIKANVSEEDYVDFLSYMRDFLRE 252

Query: 197 YCVDVALAHTLNQIVDVERTKLD 219
              D +      +  + E +K+ 
Sbjct: 253 KKSDRSYTEVFAKACESEISKVQ 275


>gi|171318244|ref|ZP_02907407.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171096588|gb|EDT41482.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 244

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 38/163 (23%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-----DVCVILFAFGF 37
           M  + +D ET                       LT   +  Y       D      A   
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPG----ALAV 56

Query: 38  DDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI----- 90
                E   D      +   +++ +++ ++ I  HN+ F+   L      LD+P      
Sbjct: 57  HGLTTEFLSDKPKFAEVVDQIRDFVKDAELII--HNAPFDLGFLDAEFARLDLPPFTEHC 114

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              I TLV A+        +L A+ +   +S+        L+ 
Sbjct: 115 GGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLD 157


>gi|149202482|ref|ZP_01879454.1| ribonuclease D [Roseovarius sp. TM1035]
 gi|149143764|gb|EDM31798.1| ribonuclease D [Roseovarius sp. TM1035]
          Length = 386

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 49/186 (26%), Gaps = 42/186 (22%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVM- 53
            + +D E     T                   + L        DD    L D +    M 
Sbjct: 22  YVTLDTEFLRERTYYS---------------KLCLLQMAVPGADDDTAVLVDPIDGAEMS 66

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + L E   +T V  V H +  +  +     +  +       T V A   G        G
Sbjct: 67  MEPLYELFRDTSVVKVFHAARQDLEIF--HVDAGVIPDPLFDTQVAAMVCGF-------G 117

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +          + L+ R  K    +     +             Y   DVT  R I++
Sbjct: 118 EQVGY--------ETLVKRIAKQTVDKSSRFTDWSRRPL-TEAQKVYALADVTHLRVIYE 168

Query: 174 RLEPLS 179
            L    
Sbjct: 169 YLAKKL 174


>gi|115351214|ref|YP_773053.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115281202|gb|ABI86719.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 244

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 38/163 (23%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-----DVCVILFAFGF 37
           M  + +D ET                       LT   +  Y       D      A   
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPG----ALAV 56

Query: 38  DDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI----- 90
                E   D      +   +++ +++ ++ I  HN+ F+   L      LD+P      
Sbjct: 57  HGLTTEFLSDKPKFAEVVDQIRDFVKDAELII--HNAPFDLGFLDAEFARLDLPPFTEHC 114

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              I TLV A+        +L A+ +   +S+        L+ 
Sbjct: 115 GGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLD 157


>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1438

 Score = 51.7 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 44/150 (29%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------- 43
            +  D ET    +       +Y  D  + L A    D  +                    
Sbjct: 422 YVVFDVETTGLSN-------QY--DKIIELAAVKVKDGEIIDKFERFSNPHERLSETIKN 472

Query: 44  --------LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHR 92
                   L D      +    K  + +     VAHN+ F+   +        +    + 
Sbjct: 473 LTHISDDMLVDAPEIEEVLTEFKSWVGDA--IFVAHNASFDMGFIDTGYEHVGIGASTNG 530

Query: 93  WICTLVLARSNGLP---SALKAVGEALKLS 119
            I TL L+R+         L  + +   + 
Sbjct: 531 VIDTLELSRTINTEYGKHGLNFLAKKYGVE 560


>gi|313631118|gb|EFR98659.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 56

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 572 DVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGY 622
             G+   Y   T +   ++YTYGGKL ENIVQA++RD LA  +     AG 
Sbjct: 4   KYGHQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAVSLRRIEDAGI 54


>gi|156039491|ref|XP_001586853.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980]
 gi|154697619|gb|EDN97357.1| hypothetical protein SS1G_11882 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 808

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 20/133 (15%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + +D E   TRS + L             V L      +    +          QVL 
Sbjct: 243 KEIAVDLEHHDTRSYVGL-------------VSLMQISTREKDWIVDTLKPWRQQLQVLN 289

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL- 116
           E   +  +  V H +Y +   L+      + +     T    R  GL   +L  + +   
Sbjct: 290 EVFADPCIIKVFHGAYMDIVWLQRDLG--LYVVGLFDTHYACRRLGLAGGSLAFLLKKYI 347

Query: 117 KLSSQKMEEGKEL 129
              + K  +  + 
Sbjct: 348 DFDADKKYQLADW 360


>gi|50552133|ref|XP_503541.1| YALI0E04444p [Yarrowia lipolytica]
 gi|49649410|emb|CAG79122.1| YALI0E04444p [Yarrowia lipolytica]
          Length = 738

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E           +  Y    C++  +         + D +    + ++  E L 
Sbjct: 242 EIAIDVE--------HHSMRTYYGITCLVQVS---SREQDYIIDTIALRNL-EIFNEVLT 289

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEALKLSSQ 121
           +  +  V H +  +   L+  F L I       T   A++ GL   +L  + +       
Sbjct: 290 DPKIVKVLHGATMDIQWLQRDFGLYI--VSLFDTFHAAQALGLKGHSLAFLLQHY----- 342

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                    A F   + ++    R +P   E       Y + D      I+ +L+    +
Sbjct: 343 ---------ANFVTSKKYQLSDWRIRPMSPEQL----LYARADTHFLLNIYDQLKNALVQ 389

Query: 182 EQELWYLDQTIND 194
           + ++  + +    
Sbjct: 390 KDKIEGVLEKSRQ 402


>gi|40063706|gb|AAR38487.1| ribonuclease D, putative [uncultured marine bacterium 583]
          Length = 341

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 77/258 (29%), Gaps = 50/258 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           L ID E     T                   + L       H +E  D +    + + L 
Sbjct: 21  LAIDTEFKRINTYY---------------PQLCLVQIAT-THSLECIDVLSINDL-EPLF 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L  +    + H++  +        +  IP+     T + A     P            
Sbjct: 64  EKLYRSKTEWIVHSARQDIEAF-YHLSKRIPV-SLFDTQIAASLLNYP------------ 109

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
               ++   +LI    +    +  + R     R       EY   DV      F++L+  
Sbjct: 110 ----LQISYQLITEVLQDIQLDKSFTRFDWTTRPLPADVVEYALDDVRYLLPNFEKLKHE 165

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQI-------VDVERTKLDQELESLTYGLVS 231
            +  +++ +LD    +  + +D  L     +        +     K   +   L     +
Sbjct: 166 LTISKKIQWLD---EETRFLLDQDLYEPSIEKICYKTKGLSQLGKKFQDKAIKLAAWREN 222

Query: 232 SSRCLEKLKTWLFLETGL 249
           +++   K + W+  +  L
Sbjct: 223 NAQQKNKPRKWIMSDEKL 240


>gi|2494181|sp|Q01941|DPOG_PICPA RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|1236527|gb|AAB17118.1| DNA polymerase gamma [Pichia pastoris]
          Length = 1012

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 74/757 (9%), Positives = 175/757 (23%), Gaps = 130/757 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEA--L 61
           F D ET     + K           V+  A         +      +      L      
Sbjct: 144 FFDVET-----MYKVSQYP------VMAVALSDKAWYGWVSPYLTEESTTNDHLIPLNTF 192

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL------------------------ 97
           E      V HN  ++R      +NL      W+ T+                        
Sbjct: 193 ETEKFI-VGHNVSYDRARALEEYNLKQTKAFWMDTMALHVSVSGMCTRQRGTWIKHNKKE 251

Query: 98  ---------VLARSNGLPSA--LKAVGEALKLSSQ-------KMEEGKELIARFCKGETH 139
                    + ++         L +      +           +   + +   +CK +  
Sbjct: 252 QENTMSVASIKSKVQNEELQELLDSTSIEDPMLEDNPWINKSSLNSLERVAEFYCKIKLK 311

Query: 140 ECLYDRNKPNHREAW----RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
           + + +       +          +YC  DV  T ++F+++ P   K          + D 
Sbjct: 312 KDIRNSFATEDPDELRGNFDELMQYCAKDVFATGKVFQKVYPKFKKLIPHPVTLAALKDI 371

Query: 196 GYCVDV---------ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL- 245
             C+             +  L Q       K    +   T  L        +   WL   
Sbjct: 372 SSCILPTTTKWEDYIETSERLYQESRRMIEKNLHVICEETVKLKDDPTKPWENDPWLSQL 431

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           +  +    LT+              P   +    +     +   + + L+  +  +G   
Sbjct: 432 DWTIDPIRLTKKGEIHKNQKLPG-YPNWYKQLIVKNELKLTTKTRTSPLLLKLAWNGNPL 490

Query: 306 GTLQFLGA------------------SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             +Q  G                     + +        +++      +    ++     
Sbjct: 491 YWIQTQGWCFKVPKNKTEEYEKLNFVMVSLKKLSEDPGFESIRAEDLKNFTFVKVPHPDG 550

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
            S        +          +    +  +  D   +      W +  +  +  F   ED
Sbjct: 551 PSARVTNCMTKSCLGFFEKGFL--NSQYPLAKDALQMAVASSYWTSSRERIMNQFVVFED 608

Query: 408 LYVTTYARSFNVAPAQVTKDQRAI-----GKVMELALGYQGGAKAFQKM---ASTTGLNL 459
                  +   +        +         K   L    +   +A +      +      
Sbjct: 609 DMGYILPQIIPMGTITRRAVENTWLTASNAKKNRLGSELKSLIEAPKGYCFVGADVDSEE 668

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHP------EHAIEDLFIGTACERVKKAWRQK 513
              A L+  +        A  +       +       + A          +     + + 
Sbjct: 669 LWIASLIGDSVFKIHGGTAIGWMTLEGTKNEGTDLHSKTAKILGISRNEAKIF--NYGRI 726

Query: 514 HSR--------VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           +          + +    L  A  +   N      +               +  +     
Sbjct: 727 YGAGIKFTTTLLKKFNPALSDAEAKATANALYTATKGISGRYDKKSIWYGGSESI--IFN 784

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTY------GGKLTENIVQAVSRD---ILAEGM-- 614
           R     ++ + ++ +         +                 +Q+   D   +L   M  
Sbjct: 785 RLEAIAEMAHPKTPVLGAGITAPLQKANLSTNNFLTSRINWAIQSSGVDYLHLLIISMDY 844

Query: 615 -MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            +        + +TVHDEI     + D+F A+    +
Sbjct: 845 LIKLFDIDARLCITVHDEIRYLVKEEDKFRAAYALQI 881


>gi|307172596|gb|EFN63955.1| Exonuclease 3'-5' domain-like-containing protein 1 [Camponotus
           floridanus]
          Length = 651

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 78/286 (27%), Gaps = 43/286 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            +  D E    I+L   G         + L   G       ++D    P + Q   L++ 
Sbjct: 244 VVSFDCE---GINLGVKG--------QLTLVQIGTMSGQAYMFDLFTCPRLVQDGGLQKL 292

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-----------PSAL 109
           LE+  V  V H+   +   L   F + +       T                       L
Sbjct: 293 LEHPHVIKVIHDCRNDSVNLYNQFTITLM--NVFDTQAAHAVLQFQETGKPVYKVKNVNL 350

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVT-V 167
             + +        ++E           +         +   R    R    Y   DV  +
Sbjct: 351 NTLCDHYGAPCNPLKE-----------QLKNIYRKDQRYWSRRPMTRDMLIYASSDVLSL 399

Query: 168 TREIFKRLEPLSSKEQELWYLDQTIN---DRGYCVDVALAHTLNQIVDVERTKLDQELES 224
             +++  +  L   E +  + +             DV       + ++ E   L + +E 
Sbjct: 400 VPQVYNAMSRLIKPEVQGLFAELCEEQIQMHIRPADVKARKRQRK-METEMVDLKKRMEE 458

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
            T   +  S    +L  W+ L      +        R L   + + 
Sbjct: 459 ATSKNIVLSNREIRLLRWMDLTEDEKEKLKANHKVARKLEKLENMG 504


>gi|154245775|ref|YP_001416733.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154159860|gb|ABS67076.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 240

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 39/153 (25%), Gaps = 44/153 (28%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD------HPVELWDCVHDPVMP 54
           M  + +D ET         G+  Y  D  ++      +         V       +  MP
Sbjct: 1   MREIVLDTETT--------GLEAYGGD-RLVEIG-CVEMVNRILTGTVFHVYINPERDMP 50

Query: 55  QVLK-------EALENTDVTI---------------VAHNSYFERTV----LKACFNLDI 88
                      E L +                    V HN+ F+       L+      I
Sbjct: 51  VEAFNVHGLSAEFLSDKPKFKDVADEFLNFIAEDTLVIHNAAFDIGFLNAELERLGRPTI 110

Query: 89  PIHRWICTLVLARSNGLPSA--LKAVGEALKLS 119
              R + TL LAR         L  +     + 
Sbjct: 111 ARDRVVDTLALARRKHPGGGNRLDDLMNRYGID 143


>gi|329114048|ref|ZP_08242812.1| DNA polymerase I [Acetobacter pomorum DM001]
 gi|326696587|gb|EGE48264.1| DNA polymerase I [Acetobacter pomorum DM001]
          Length = 542

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 61/516 (11%), Positives = 128/516 (24%), Gaps = 130/516 (25%)

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV-ERTKLDQ 220
           K DVT     +   + +  + ++++       ++G   D  +       ++       +Q
Sbjct: 98  KRDVTTQLGHYGAEQDVCDRYRKMF-------NKGAPFDAEVVCKAATAIEAMYLKLCEQ 150

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT---ETTCQR-----VLSSNKKLTPQ 272
              +       +          L +  G+ ++ +    + +         L +       
Sbjct: 151 ASANGELERFFTVEVPAYRLLQLSMSAGISIDTIGLSEKRSQAEHDYFLALKAYSAKHDM 210

Query: 273 AIQVFNNRMRASRSAVLK-------LNTLVEAMNSDGRLRGTLQFLGA-SRTGRWSGCVF 324
            ++  + R   S+  +         +  L+E +  D    G    L A   T R  G + 
Sbjct: 211 PLETPSRRALESKLVLEGFELDEVSIEYLLEFVPHDRDFGGDTMALLALDVTRRVLGSLT 270

Query: 325 PPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGI 384
              N+ RP             L +        LQ I    RS + A  G KL   D    
Sbjct: 271 LATNITRPVVDVFGSRTSRVQLRSPS------LQNIPKRYRSIISARTGAKLCYVDFDQF 324

Query: 385 EARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG 444
           E  ++A ++G++   + +                        D   +     L L     
Sbjct: 325 EVGIMAALSGDEELKRLYA---------------------AGDMYDLFANTHLGLVNNRK 363

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           A     ++   G++         +     +                              
Sbjct: 364 AAKQLFLSYAYGMSRKALIDAAYSLGVERQKAK------------------------EAF 399

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
           R+ + +      +   +                                           
Sbjct: 400 RLFQRYEDWKRSIWAEFQGT---------------------------------------- 419

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-AGYD 623
           GR          R      + +  R           +VQ  +  I    ++         
Sbjct: 420 GRVATVLGNHYRRIGKGQLSGKEQRSA------VSQVVQGTASLIFKRALLAVASIDDVK 473

Query: 624 IVLTVHDEIVCE-----TPDTDEFNASMLYHLMTSN 654
           +VL +HD ++ E     TPD        +   MT  
Sbjct: 474 VVLPMHDALLFEHRLAGTPDKVVRAFETV---MTEV 506


>gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 1435

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           D   + V+ +   +   + +  +VAHN+ F+   L   +    ++      I TL L+R 
Sbjct: 481 DAPQEDVVLKDFYDF--SQNTILVAHNASFDIGFLNKGYERIGIENTPLPVIDTLELSRM 538

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   ++
Sbjct: 539 VNPHLKSHRLNTLAKRYGVN 558


>gi|308810304|ref|XP_003082461.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
           (ISS) [Ostreococcus tauri]
 gi|116060929|emb|CAL57407.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
           (ISS) [Ostreococcus tauri]
          Length = 701

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 46/178 (25%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E             +  +    +       +    +       ++   L +A 
Sbjct: 139 KEFAVDLE---------HHSYRSFKGFTCL-MQVSTREKDFVVDVLALRSLVRDALGKAF 188

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            + +   V H +  +   L+  F + +       T   AR   LP       +AL    Q
Sbjct: 189 ADPNTLKVMHGADNDVQWLQKDFGIFVSC--LFDTGQAARVLELP------SKALAYLLQ 240

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                K       K         R         R   +Y +GD      ++  L+   
Sbjct: 241 HYCGIKA-----NKKFQLADWRVRPLT------REMLDYARGDTHYLLYVYDELKKAL 287


>gi|302544332|ref|ZP_07296674.1| putative DNA polymerase I [Streptomyces hygroscopicus ATCC 53653]
 gi|302461950|gb|EFL25043.1| putative DNA polymerase I [Streptomyces himastatinicus ATCC 53653]
          Length = 241

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 85/315 (26%), Gaps = 91/315 (28%)

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
           +A  G +LVVAD   +E RVLA ++ ++  ++   TG DLY             +    +
Sbjct: 1   VADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGTGRDLYAELS--------DRAFAGR 52

Query: 429 RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQEN 488
           R   K+  L   Y            T+G  L   A L                       
Sbjct: 53  RDQAKLALLGAVY----------GQTSGDGLKHLAAL----------------------- 79

Query: 489 HPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPL 548
                                 R++                +  E G+ +     R  P 
Sbjct: 80  ----------------------RRRFPA----AVAYVDDAARAGEEGRLVRTWLGRTCPP 113

Query: 549 VYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD 608
                        LP       RD+     Y +T + +       G      +VQ  + D
Sbjct: 114 AGGAATDPADEAGLP-------RDLDEEPRYGSTPSARAR-----GRFTRNFVVQGSAAD 161

Query: 609 IL------AEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM-LYHLMTSNPSWAKG- 660
                       + A     ++V   HDE++   P+ +       +        + A G 
Sbjct: 162 WAVLMLAALRRALAAAGLRAELVFFQHDEVIVHCPEPEVAAVRQAIAEAGEVAGTIAFGT 221

Query: 661 ----LPLKAEGYESK 671
                PL     E  
Sbjct: 222 TPVRFPLTVAAVECY 236


>gi|251779366|ref|ZP_04822286.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083681|gb|EES49571.1| DNA polymerase III subunit epsilon [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 309

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 25/142 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------------LFAFGFDD-HPVE 43
           M  + IDFET +    + C I     +D  +I                   G     P  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGKIIEEVHHLIKPKEMRFMPINIGIHGIRPRM 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           + D +    + + +K    N +  ++AHN+ F+ +VL+     +N+++P  ++ICT+ L+
Sbjct: 61  VQDELEFDKVWEKIKHYF-NEN-LVIAHNASFDISVLRNTLELYNIEMPSFQYICTMKLS 118

Query: 101 ---RSNGLPSALKAVGEALKLS 119
               SN   + L  V   L   
Sbjct: 119 KNFYSNLDNARLNTVNNFLGYE 140


>gi|188588313|ref|YP_001920971.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498594|gb|ACD51730.1| DNA polymerase III subunit epsilon [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 309

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 25/142 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------------LFAFGFDD-HPVE 43
           M  + IDFET +    + C I     +D  +I                   G     P  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGKIIEEVHHLIKPKEMRFMPINIGIHGIRPRM 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           + D +    + + +K    N +  ++AHN+ F+ +VL+     +N+++P  ++ICT+ L+
Sbjct: 61  VQDELEFDKVWEKIKHYF-NEN-LVIAHNASFDISVLRNTLELYNIEMPSFQYICTMKLS 118

Query: 101 ---RSNGLPSALKAVGEALKLS 119
               SN   + L  V   L   
Sbjct: 119 KNFYSNLDNARLNTVNNFLGYE 140


>gi|157803402|ref|YP_001491951.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
 gi|157784665|gb|ABV73166.1| DNA polymerase III subunit epsilon [Rickettsia canadensis str.
           McKiel]
          Length = 229

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 50/183 (27%), Gaps = 34/183 (18%)

Query: 2   ATLFIDFETRSPID-----LTKCGICKYAEDVCVIL--FAFGFDDH-----PVELWDCVH 49
             + +D ET          + + G      +  +    F F  +              + 
Sbjct: 5   REIILDTETTGLDPQQGHRIVEIGA-IEMVNKVLTGRNFHFYINPERDMPFEAYRIHGLS 63

Query: 50  DP---------VMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFNLDIPIHRW 93
           D           +     E + ++   ++ HN+ F+          LK      + +   
Sbjct: 64  DEFLKDKPLFHTIADDFLEFISDS--KLIIHNAPFDIKFLNHELSLLKRTEIKLLELANT 121

Query: 94  ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPNH 150
           I TLV+ARS        L A+ +  K+ +   +    L       E        R     
Sbjct: 122 IDTLVMARSMFPGAKYNLDALCKRFKVDNSGRQVHSALKDAALLAEVYVALTGGRQSTFK 181

Query: 151 REA 153
              
Sbjct: 182 IVD 184


>gi|325508152|gb|ADZ19788.1| DNA polymerase III subunit epsilon [Clostridium acetobutylicum EA
           2018]
          Length = 317

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 22/121 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------------LFAFGFDD-HPVE 43
           M    IDFET +    + C I     +D  V+                   G     P  
Sbjct: 12  MKFTAIDFETANEKRNSPCSIGIVVVKDGHVVEKSHHLIRPKEMRFMPINIGIHGIRPAM 71

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           +        + + +K   ++    ++AHN+ F+ +VL+     +N+++P   +ICT+ LA
Sbjct: 72  VEKEPEFDKVWEKIKHYFDD--TLVIAHNASFDISVLRKSAELYNIELPEFNYICTMKLA 129

Query: 101 R 101
           R
Sbjct: 130 R 130


>gi|325171157|ref|YP_004251132.1| hypothetical protein ViPhICP1_gp191 [Vibrio phage ICP1]
 gi|323512552|gb|ADX88007.1| conserved hypothetical protein [Vibrio phage ICP1]
 gi|323512778|gb|ADX88232.1| gp35 [Vibrio phage ICP1_2006_D]
 gi|323513006|gb|ADX88459.1| gp35 [Vibrio phage ICP1_2006_C]
 gi|323513231|gb|ADX88683.1| hypothetical protein TUST1-159_00915 [Vibrio phage ICP1_2006_B]
 gi|323513458|gb|ADX88909.1| hypothetical protein TUST1-17_00915 [Vibrio phage ICP1_2006_A]
 gi|323513689|gb|ADX89139.1| gp35 [Vibrio phage ICP1_2005_A]
 gi|323513920|gb|ADX89369.1| gp35 [Vibrio phage ICP1_2001_A]
 gi|323514148|gb|ADX89596.1| hypothetical protein TUST1-10_00920 [Vibrio phage ICP1_2004_A]
          Length = 337

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 69/217 (31%), Gaps = 30/217 (13%)

Query: 2   ATLFIDFETR------SPIDLTKCGICKYAEDVCVILFAFGF-DDHPVEL------WDCV 48
             L ID ET         +     G+ +   +  ++ +   +     V         D  
Sbjct: 79  KVLLIDLETAPCKMYGWSLWNQNFGLNQIESEWFILSYCAKWLGSDDVIYNDLKGKVDTE 138

Query: 49  HDPVMPQVLKEALENTDVTIVAHN-SYFERTVLKACFNLD----IPIHRWICTL-VLARS 102
            D  +   L E +   D+ +V  N   F+   L A   ++        +   TL +  R 
Sbjct: 139 DDYQLLSELWELMNQADI-VVGQNHRRFDIKRLNARLIMNGFRPYSPVKTEDTLDIAKRK 197

Query: 103 NGLPSA-LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            G  S  L+ + + L +  +K + G+              L+ +    + +AW     Y 
Sbjct: 198 FGFTSNKLEWMTDKLCVEFKKQKHGQ---------FAGFELWKQCLLENEDAWNEMKIYN 248

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
             DV    E++ +L     +           N R  C
Sbjct: 249 IFDVLSLEELWLKLRAWDDRSVNYALYLDDTNIRCTC 285


>gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
 gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
          Length = 702

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/261 (9%), Positives = 65/261 (24%), Gaps = 35/261 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+E  ++     V H +  +   L+   +  I +     T   +R   +           
Sbjct: 216 LQEPFKDPTKRKVMHGADRDIMWLQR--DFHIYVCNLFDTGQASRVLQMERN-------- 265

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + L+  FC     +   + +  +         +Y + D      I+  + 
Sbjct: 266 --------SLEHLLLHFCGVTAKKEYQNADWRSRPLP-DEMIKYAREDTHYLLYIYDLMR 316

Query: 177 PL------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                             +    +     ++    D +  H           K    + +
Sbjct: 317 QRLQKESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDAKQLAVVAA 376

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN-KKLTPQAI---QVFNNR 280
           L     S +R  ++   ++     L        T    L    K   P      ++    
Sbjct: 377 LHEWRDSIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVESNLELIAYT 436

Query: 281 MRASRSAVLKLNTLVEAMNSD 301
           +  +         + E +  +
Sbjct: 437 VWNALKYSYAYEGIAEQLKKE 457


>gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448]
 gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 1469

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 37/148 (25%)

Query: 2   ATLFIDFETRSPID-----------LTKCGICKYAEDV-------------CVILFAFGF 37
             +  D ET                + + GI                     +   +   
Sbjct: 410 KFVIFDLETTGLSAFYNEIIEFGAVVLQNGIEIEKHQFFIKPTGKIPPAITKITGISQKM 469

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP---IHRWI 94
            D     W+        + + + ++++   +VAHN+ F+ + L+  F         +  I
Sbjct: 470 IDETAISWEIA-----LEKITKIIKDS--VLVAHNAAFDFSFLEQFFRQKAKKSLKNPII 522

Query: 95  CTLVLARSNGL---PSALKAVGEALKLS 119
            TL ++R         +LK V +  ++ 
Sbjct: 523 DTLEVSRFLNPNEKSHSLKNVAKRYEIE 550


>gi|160872285|ref|ZP_02062417.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
 gi|159121084|gb|EDP46422.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
          Length = 235

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 55/200 (27%), Gaps = 46/200 (23%)

Query: 1   MATLFIDFETRS------------------PIDLTKCGICKYA--------EDVCVILFA 34
           M  + +D ET                       LTK     Y             +   +
Sbjct: 1   MRQIILDTETTGRDINNGHRIIEIGCLELIDRQLTKRQFHCYLNPGRDSDPGAFAIHGLS 60

Query: 35  FGFD-DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD------ 87
             F  D PV          +   L   ++++ + I  HN+ F+   L+    L       
Sbjct: 61  TEFLMDKPVFT-------TIADELLNFIKDSQLII--HNAPFDLAFLEYELTLTKKKYKK 111

Query: 88  -IPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLY 143
                + + +L+LAR        +L A+ +   +   K  + G  L A            
Sbjct: 112 MTDYCQILDSLLLARQLHPGQRNSLDALCKRYNIDHSKRDKHGALLDAELLARVYLAMTG 171

Query: 144 DRNKPNHREAWRLFGEYCKG 163
            +    +         + + 
Sbjct: 172 GQTHLFNEPKPLTIQTHARQ 191


>gi|85717198|ref|ZP_01048155.1| ribonuclease D [Nitrobacter sp. Nb-311A]
 gi|85695978|gb|EAQ33879.1| ribonuclease D [Nitrobacter sp. Nb-311A]
          Length = 420

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 74/294 (25%), Gaps = 34/294 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E      L +           + +             D + + +        + 
Sbjct: 60  VITVDTE-----FLRETTYYPL-----LCVIQMA-SPDEAIAIDALAEGIDLNSFFTLMS 108

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  V  V H +  +  ++     +    H    T V A   G   ++       +++  +
Sbjct: 109 NEGVLKVFHAARQDIEIIWHQAGII--PHPVFDTQVAAMVLGYGDSIAYDALVERVTGHR 166

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE-YCKGDVTV-----------TRE 170
            ++         +  T E                  + +   DV +             E
Sbjct: 167 PDKTHRFTDWSRRPLTAE-----QLEYAVADVTHLRDVFAALDVDLRKRGRSDWVSEEME 221

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGY--CVDVALAHTLNQIVDVERTKLDQELESLTYG 228
           I    +      +  W   +T   +     V + +A    Q          + L+    G
Sbjct: 222 ILTSPKTYDFHPERAWERLKTRVRKPKDLAVLMEVAAWREQEAQSRNIPRSRVLKDDAVG 281

Query: 229 LVSS--SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
            +++      E+L T   L  G             V     +      ++   R
Sbjct: 282 DIATHAPASPERLATLRSLPKGFEKSQWGADIVAAVQRGLARDPGTLPKIEKPR 335


>gi|229846478|ref|ZP_04466586.1| ribonuclease D [Haemophilus influenzae 7P49H1]
 gi|229810571|gb|EEP46289.1| ribonuclease D [Haemophilus influenzae 7P49H1]
          Length = 380

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 88/295 (29%), Gaps = 53/295 (17%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           +D   V L D        P      L N  V  + H+   +  V    F  D      I 
Sbjct: 55  YDGERVSLIDPLAITDFSP--FVALLSNPKVLKILHSCSEDLLVFLQEF--DQLPRPMID 110

Query: 96  TLVLARSNGL--PSALKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           T ++AR  GL   + L  + +  L +   K       I R                    
Sbjct: 111 TQIMARFIGLGTSAGLAKLAQQYLNIEIDKGATRTNWIKRPLS----------------- 153

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
              +  +Y  GDV     ++  LE   +K      +            +A  H L +   
Sbjct: 154 --DIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRDDCELV-----LAKTHKLQERDS 206

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
            +          L    +S  R L + +  + +E  L L  + ++     L    K  P+
Sbjct: 207 EKAYLDIPNAWKLNPLELSRLRILAQWRQNVAIERDLALSYIVKS---EHLWKVAKNNPR 263

Query: 273 A------------------IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQ 309
                               ++    ++A R +       +E ++ D R + T++
Sbjct: 264 NTSEMLEMGLTENEVRVRGKKILQLLVQARRISSNDYPKPIERISEDPRYKKTIR 318


>gi|327197775|ref|YP_004301473.1| gp140 [Brochothrix phage A9]
 gi|299810375|gb|ADJ53174.1| gp140 [Brochothrix phage A9]
          Length = 700

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 23/167 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--MPQVLK 58
           M  +  D+ET +     K           ++  +  +++         H      P+ LK
Sbjct: 230 MDAIGWDYETNTLRGEMKGS--------KILTISLSWEEGRAVTIPVEHPEYPHTPENLK 281

Query: 59  EA------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS----- 107
           E           +   VAHN  F+  + K   +  + +   + T V      +       
Sbjct: 282 EVKSLIGKFLIANTYKVAHNGQFDMRISKQLIDQKLTVANSLDTQV-GYYLTVSQKTEDA 340

Query: 108 -ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
             LK +           +   E    F K    +    R+       
Sbjct: 341 FGLKTIVYQYTDMGGYEDPLDEYKEWFLKKLLKKTARIRDILARPVE 387


>gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
 gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
          Length = 1369

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVL-----KACFNLDIPIHRWICTLVLA 100
                     +K   E   D+ +VAHN+ F+   +           +I    +I TL ++
Sbjct: 413 VEDGEEEEAAVKAFCEFCGDLILVAHNAKFDMGFMEIALNAHHLENNI---TYIDTLAMS 469

Query: 101 RSNGLP---SALKAVGEALKLSS 120
           R+         LK +    K+  
Sbjct: 470 RTLIPTINKHNLKKLASYFKVDM 492


>gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 235

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 38/151 (25%)

Query: 1   MATLFIDFETRSPID-----------------LTKCGICKYAEDVCVILFAFGFDDHPVE 43
           M  +  D ET                      LT      Y     VI       D  V 
Sbjct: 1   MREIIFDTETTGLNKESDRIIEIGCIEMINRYLTGRRFHVYLNPQDVI-----IPDEVVA 55

Query: 44  LWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIH 91
           +    ++          +   L + +++  +  VAHN+ F+       L+      I   
Sbjct: 56  IHGLTNERLKDEKKFDDIVDALLDFIDDATI--VAHNANFDIGFLNAELERVNKPLINSD 113

Query: 92  RWICTLVLARSNGL--PSALKAVGEALKLSS 120
             I TL +AR      P++L  + +   + +
Sbjct: 114 NVIDTLSIARRRFPMGPNSLDVLCKRFGIDN 144


>gi|224064982|ref|XP_002301621.1| predicted protein [Populus trichocarpa]
 gi|222843347|gb|EEE80894.1| predicted protein [Populus trichocarpa]
          Length = 228

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 47/188 (25%), Gaps = 32/188 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E  S                   L      +    L D +    +  VL    
Sbjct: 72  KVFAVDTEQHSLRSFLGFTA----------LIQISTRNED-YLVDTIALHDVMGVLAPVF 120

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +  V H +  +   L+   +  I +     T                 +A ++ S+
Sbjct: 121 ADPTICKVFHGADNDVLWLQR--DFHIYVVNLFDT----------------AKACEVLSK 162

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSS 180
             +    L+  +C          + +   +        EY + D      I   L     
Sbjct: 163 PQKSLAYLLETYC--GVATNKLLQREDWRQRPLSAEMLEYAQTDAHYLLYIAGCLIAELK 220

Query: 181 KEQELWYL 188
            +    YL
Sbjct: 221 LQDRGMYL 228


>gi|17546591|ref|NP_519993.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum GMI1000]
 gi|17428890|emb|CAD15574.1| probable dna polymerase III (epsilon chain) protein [Ralstonia
           solanacearum GMI1000]
          Length = 242

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 53/195 (27%), Gaps = 30/195 (15%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y   +  +   A       
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYLNPEREIDAGAMAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI---PIHRWI 94
            E   D      +   +++ ++  +  I  HN+ F+   L        L      +   I
Sbjct: 61  NEFVADKPKFAEVVDEIRDYVQGAEAII--HNAAFDLGFLDMEFKRLGLPPFREHLAGHI 118

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL+ AR        +L A+ + L +S+        L+      E +  +         +
Sbjct: 119 DTLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVID 178

Query: 153 AWRLFGEYCKGDVTV 167
                         +
Sbjct: 179 MLESGETAAAEAAVI 193


>gi|238499913|ref|XP_002381191.1| DNA polymerase gamma [Aspergillus flavus NRRL3357]
 gi|220692944|gb|EED49290.1| DNA polymerase gamma [Aspergillus flavus NRRL3357]
          Length = 1015

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 54/480 (11%), Positives = 116/480 (24%), Gaps = 86/480 (17%)

Query: 172 FKRLEPLSSKEQELWYLDQ-TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +                DQ    +    V   +       +  +R  +  +L        
Sbjct: 415 YPLTWSDKYGWTFKVPRDQVKKFENQPVVLCDMTEEKIAELRDDRRHVYFKLPHKDGPQA 474

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
                L K     F    L          +  L  N           + R R     V+ 
Sbjct: 475 RCVNPLAKGYMQYFERGTL---SSQYALAKEALEMNAS----CSYWISARDRIMGQMVVY 527

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            + + ++ +++   R                    PQ +P  + +   ++        + 
Sbjct: 528 KDEVQKSASNNAESRTGFIL---------------PQVIPMGTITRRAVENTWLTASNAK 572

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            +       +   +++ + A  G   V AD+   E   +A + G+               
Sbjct: 573 EN------RVGSELKAMIKAPPGYVFVGADVDSQEL-WIASLIGDAQFQIHGGNAIGFMT 625

Query: 411 TTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
              +++        T       R   KV      Y  G K    +      +++      
Sbjct: 626 LEGSKAAGTDMHSRTAKILGISRNDAKVFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQE 685

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                 +E + A    R + ++       + F+    E      R +   +         
Sbjct: 686 VATKLYQETKGARTTRRILSDSPFWRGGTESFVFNKLEEFADQERPRTPTL--------- 736

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                        A  RR +        + N  +       L    +      ++   R+
Sbjct: 737 -------GAGITEALMRRFINRGSFMTSRINWAIQSSGVDYLHLLII-----AMDYLIRR 784

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                                                + +TVHDEI     D D++ A++
Sbjct: 785 FNIAA-------------------------------RLAITVHDEIRYLVKDEDKYRAAL 813


>gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
 gi|225202089|gb|EEG84443.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
          Length = 250

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPI---------DLTKCGI-------------CKYA--------EDVCVI 31
             + +D ET             ++ + G                Y         E   V 
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPERLVDPEAFEVH 66

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI 88
             +         L DC     +     E +      ++ HN+ F+   +       N DI
Sbjct: 67  GIS------DEFLEDCPSFADIADEFLEYIR--GAELIIHNASFDIGFMDYEFRKLNRDI 118

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L +AR+        L A+ +   + + K      L+ 
Sbjct: 119 PPTETFCQITDSLAMARALFPGKRNNLDALCDRYLIDNSKRTLHGALLD 167


>gi|116251369|ref|YP_767207.1| ribonuclease D [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256017|emb|CAK07098.1| putative ribonuclease D [Rhizobium leguminosarum bv. viciae 3841]
          Length = 381

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 66/240 (27%), Gaps = 34/240 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           + +      + L         V +       +      E +
Sbjct: 19  DFITIDTE----------FLRETTFWPELCLIQMASPTTEVLVDPLAKG-IDLAPFFELM 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +T V  V H +  +  ++    N  +  H    T V A   G      +V     +S  
Sbjct: 68  ADTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFG---DSVSYDQLVSRI 122

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K            K         R   + +        Y   DVT  R+++  L+    +
Sbjct: 123 KNVHI-------DKSSRFTDWSRRPLSDKQLD------YALADVTHLRDVYLSLKAELDR 169

Query: 182 E----QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           E         +D   +   Y +    A    + + + + +    L+ +       +R   
Sbjct: 170 EGRSSWLSEEMDILESRETYDMHPDDAWQRLK-MRLRKPQELAILKYVAAWREREARARN 228


>gi|114571517|ref|YP_758197.1| DNA polymerase III subunit epsilon [Maricaulis maris MCS10]
 gi|114341979|gb|ABI67259.1| DNA polymerase III, epsilon subunit [Maricaulis maris MCS10]
          Length = 230

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 53/160 (33%), Gaps = 34/160 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  +  D ET            +  E  CV +  F                 +P+ + E 
Sbjct: 1   MREIVFDTETTGLDP---NTGDRVTELGCVEIIDF-IPTGKTFHAYVNPQRSVPKEVVEI 56

Query: 61  -------LENT---------------DVTIVAHNSYFERTV----LKACFNLDI-PIHRW 93
                  L +                D T+VAHN+ F+R      L     LDI P  R+
Sbjct: 57  TGLTTEFLADKPLFDEVGPQFVEFVGDATMVAHNAPFDRGFINMELAR-LGLDIYPDDRF 115

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             T  +AR+    S  +L A+ +   +S    ++   LI 
Sbjct: 116 KDTARIARAKFPGSYVSLDALCKRFDISLDTRDKHGALID 155


>gi|182627949|gb|ACB89111.1| gp ORF118 [Staphylococcus phage A5W]
          Length = 447

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/297 (8%), Positives = 52/297 (17%), Gaps = 84/297 (28%)

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L    ++  L+         +       +    +   N         L   Y  GD  V
Sbjct: 155 GLSDYAKSYTLN----TAINLINEYRDVKDVVNDIDGGNFNYDWFPIELMHPYASGDTDV 210

Query: 168 TREIFKRLEPLSSKEQELWYL-------------DQTINDRGYCVDVALAHTLNQIVDVE 214
            R I   +     ++     +                I   G   D+      ++  + E
Sbjct: 211 CRRIHCDVIKKLKEQDRPKSMHLLEVNYPRLTKSLARIESNGLYCDLDYMKENDESYESE 270

Query: 215 RTKLDQELESLTYGLVSS----------------------------------------SR 234
             K    +                                                    
Sbjct: 271 MAKNHATMREHWAVKEFEEYQYNLYQMALEEHEKKPKDRDKDIHQYRDKFKDGKWMFSPS 330

Query: 235 CLEKLKTWLFLETG--LHLED---LTETTCQRVLS----------------------SNK 267
             +     ++   G  L  +      +     V                          K
Sbjct: 331 SGDHKGRVIYDILGIQLPYDKEYVKEKPFNANVKEADLTWQDYKTDKKAIGYALDNLELK 390

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
               + +++                 L+  +N   R          + T R S    
Sbjct: 391 DDVKELLELLKYHASMQTKRNSFTKKLLNMINKQKRTLHGSFSETGTETSRLSSSNP 447


>gi|262212397|gb|ACY35815.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 66/275 (24%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYRDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A +                 
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAAIA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1440

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 22/139 (15%)

Query: 3   TLFIDFETRSP---IDLTKCGICKYAEDVCVI-LF-AFGFDDHP--VELWDCV------- 48
            +  D ET       D           D  +I  F +F    HP      D         
Sbjct: 425 YIVFDVETTGLSAVYDTIIELAAVKIHDGEIIDRFESFANPHHPLSATTIDLTGITDDDV 484

Query: 49  -HDPVMPQVLKEALENT-DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
            + P + +VL+   E + +  +VAHN+ F+   L      + L    +  I TL LAR  
Sbjct: 485 RNAPEVEEVLRRFKEWSQNDILVAHNASFDMGFLNTGYKRYGLGKAANPVIDTLELARFL 544

Query: 104 GL---PSALKAVGEALKLS 119
                   L  + +   + 
Sbjct: 545 LPEMKNHRLNTLAKKFDVE 563


>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 1438

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 26/141 (18%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDHP--VELW----------- 45
            +  D ET         + +    K  E   +  +A   + H                  
Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMREGKEIDRYATFVNPHERIPYHIQQLTNINDDMV 480

Query: 46  -DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
            D      + +   E  E+    +VAHN+ F+   +        L I  +  + TL LAR
Sbjct: 481 KDAPDVEPVLKRFVEFAEDA--ILVAHNARFDYDFVNAKLKELGLPIMENPVLDTLELAR 538

Query: 102 SNGLP---SALKAVGEALKLS 119
                     L  +    K+S
Sbjct: 539 MLFPTMKNHRLNTLAAKYKVS 559


>gi|103488315|ref|YP_617876.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
 gi|98978392|gb|ABF54543.1| DNA polymerase III, epsilon subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 231

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 41/180 (22%)

Query: 1   MATLFIDFETRS----------------PIDLTKCGICKYA-EDVC---------VILFA 34
           M  +  D ET                   ID  + G+  +A  +           V   +
Sbjct: 1   MREIIFDTETTGFDPRNGDRLVEIGCVELIDRRETGVTFHAYFNPERDMPAAAEAVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPI 90
             F                   L +   +    ++AHN+ F+       L+      + +
Sbjct: 61  SQFLSDK----PLFAAR--VDELLDFFGDA--PLIAHNAAFDFGFVNAELERIGRPPLDM 112

Query: 91  HRWICTLVLARSNGLP--SALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNK 147
            R  CT+ +AR        +L A+     +  S +++ G  L A        E    R  
Sbjct: 113 ARMCCTVQMARKLHPGAKHSLDALCTRYGIDRSHRIKHGALLDAELLAHLYIEMTGGRQI 172


>gi|240849687|ref|YP_002971075.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup]
 gi|240266810|gb|ACS50398.1| DNA polymerase III epsilon chain [Bartonella grahamii as4aup]
          Length = 235

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 28/146 (19%)

Query: 1   MATLFIDFETRSP----IDLTKCG----ICKYA--EDVCVIL--FAFGFDDHPVELWDCV 48
           M  +  D ET         + + G    + +Y       V L        D  V +    
Sbjct: 1   MREIIFDTETTGLDKEKDRIIEIGCVEMVDRYLTGRQFHVYLNPEGVIIPDEVVAIHGLT 60

Query: 49  HD--------PVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICT 96
           ++          +     E +     T++AHN+ F+       LK      I +   + T
Sbjct: 61  NERLKNEKSFSDIVDEFLEFI--KGATMIAHNASFDIGFINAELKRVNKPLISVDNILDT 118

Query: 97  LVLARSNGL--PSALKAVGEALKLSS 120
           L +AR      P++L  + +   + +
Sbjct: 119 LAMARRKFPMGPNSLDILCKRFGIDN 144


>gi|75911825|gb|ABA29511.1| hypothetical protein [Campylobacter jejuni]
 gi|75911835|gb|ABA29519.1| hypothetical protein [Campylobacter jejuni]
          Length = 276

 Score = 51.3 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 46/201 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 91  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 150

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 151 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 200

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD----QTINDRG 196
                    +        EYC+ DV  T  +F + E + +   E  Y+D         R 
Sbjct: 201 --------FYENELEKIHEYCESDVLNTYMLFLKYELIKANVSEEDYVDFLSYMRDFLRS 252

Query: 197 YCVDVALAHTLNQIVDVERTK 217
              D +      +  + E +K
Sbjct: 253 KKSDRSYTEVFAKACESEISK 273


>gi|148227808|ref|NP_001081838.1| Werner syndrome ATP-dependent helicase homolog [Xenopus laevis]
 gi|29428101|sp|O93530|WRN_XENLA RecName: Full=Werner syndrome ATP-dependent helicase homolog;
           AltName: Full=Exonuclease WRN; AltName:
           Full=Focus-forming activity 1; Short=FFA-1
 gi|3420291|gb|AAC63512.1| focus forming activity 1 [Xenopus laevis]
          Length = 1436

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 71/275 (25%), Gaps = 56/275 (20%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    +    +   V L      +    L+        P+ LK  LE+  V  V     
Sbjct: 76  DIEWPPVYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKV----- 130

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE-----L 129
                      + I   +W    +++        LK   E  ++++QK+   ++     L
Sbjct: 131 ----------GVGIEGDQW---KLMS---DYELKLKGFIELSEMANQKLRCKEKWTFNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           I    K + ++    R               Y   D      I+K+LE       +    
Sbjct: 175 IKHLFKEQLYKRKSYRCSNWDIFLLTEDQKLYAATDAYAGLLIYKKLE-----GMDAHES 229

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
           D     R    D          +      L  ++ +       + R +            
Sbjct: 230 DSFRVGREGVADCKGVKRQLTDLSKGLMDLVNQVPNSFGCYTEAVRAV------------ 277

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                        +L    +   +   +     +A
Sbjct: 278 ------------DILEDLSEKLEELRNIMKEASKA 300


>gi|332194982|gb|AEE33103.1| RRP6-like protein 1 [Arabidopsis thaliana]
          Length = 639

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 47/193 (24%), Gaps = 31/193 (16%)

Query: 32  LFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           L           + D       +   L+E  ++     V H +  +   L+  F + +  
Sbjct: 155 LMQISTRTED-YIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYV-- 211

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T   +R   L                     + L+  +C    ++     +    
Sbjct: 212 CNLFDTGQASRVLKLERN----------------SLEFLLKHYCGVAANKEYQKADWRIR 255

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                +   Y + D      I+  +                  D     D  L     + 
Sbjct: 256 PLP-DVMKRYAREDTHYLLYIYDVMRMELH--------TMAKEDEQS--DSPLVEVYKRS 304

Query: 211 VDVERTKLDQELE 223
            DV     ++EL 
Sbjct: 305 YDVCMQLYEKELW 317


>gi|298291118|ref|YP_003693057.1| ribonuclease D [Starkeya novella DSM 506]
 gi|296927629|gb|ADH88438.1| ribonuclease D [Starkeya novella DSM 506]
          Length = 385

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 61/237 (25%), Gaps = 27/237 (11%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
               + D V D +        + +  V  V H    +  ++     +    H    T V 
Sbjct: 48  EEAIVVDAVADGIDLAPFFALMSDEKVLKVFHAGRQDIEIVWHLAGII--PHPVFDTQVA 105

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           A   G   +                   +L+ R       + L   +      +      
Sbjct: 106 AMVLGHGDS---------------ISYDQLVQRITGEVLDKSLRFTDWSRRPLSAAQ-IA 149

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           Y + DVT  R++F +L+      ++    D    +              +          
Sbjct: 150 YAEADVTHLRDVFLKLDADL---KKRGRADWVGEEMAVLTSPDTYRQEPERAWERLRSRA 206

Query: 220 QE------LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLT 270
           ++      L  +       ++  +  ++ +  +  +        T    L   + + 
Sbjct: 207 RKPKDLAVLMEVAAWREREAQSRDTPRSRILKDDVIGEIASQHPTTAERLGQLRSIP 263


>gi|221468312|ref|NP_726360.3| egalitarian [Drosophila melanogaster]
 gi|220902361|gb|AAF47054.4| egalitarian [Drosophila melanogaster]
          Length = 1004

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 50/168 (29%), Gaps = 16/168 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            + +D E    I+L   G         + L   G       L+D    P M     LK  
Sbjct: 557 VVSLDCE---GINLGLKG--------EITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTV 605

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+  V  V H+   +   L       I +     T           + K V +A  +S 
Sbjct: 606 LEHDQVIKVIHDCRNDAANL--YLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISL 663

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTV 167
             + E         K +  +      K   +    R    Y  GDV V
Sbjct: 664 NSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLV 711


>gi|195586140|ref|XP_002082836.1| GD25020 [Drosophila simulans]
 gi|194194845|gb|EDX08421.1| GD25020 [Drosophila simulans]
          Length = 860

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 50/168 (29%), Gaps = 16/168 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            + +D E    I+L   G         + L   G       L+D    P M     LK  
Sbjct: 555 VVSLDCE---GINLGLKG--------EITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTV 603

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+  V  V H+   +   L       I +     T           + K V +A  +S 
Sbjct: 604 LEHDQVIKVIHDCRNDAANL--YLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISL 661

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTV 167
             + E         K +  +      K   +    R    Y  GDV V
Sbjct: 662 NSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLV 709


>gi|195347186|ref|XP_002040135.1| GM15515 [Drosophila sechellia]
 gi|194135484|gb|EDW57000.1| GM15515 [Drosophila sechellia]
          Length = 1035

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 50/168 (29%), Gaps = 16/168 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            + +D E    I+L   G         + L   G       L+D    P M     LK  
Sbjct: 625 VVSLDCE---GINLGLKG--------EITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTV 673

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+  V  V H+   +   L       I +     T           + K V +A  +S 
Sbjct: 674 LEHDQVIKVIHDCRNDAANL--YLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISL 731

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTV 167
             + E         K +  +      K   +    R    Y  GDV V
Sbjct: 732 NSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLV 779


>gi|194885564|ref|XP_001976457.1| GG20003 [Drosophila erecta]
 gi|190659644|gb|EDV56857.1| GG20003 [Drosophila erecta]
          Length = 824

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 50/168 (29%), Gaps = 16/168 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            + +D E    I+L   G         + L   G       L+D    P M     LK  
Sbjct: 560 VVSLDCE---GINLGLKG--------EITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTV 608

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+  V  V H+   +   L       I +     T           + K V +A  +S 
Sbjct: 609 LEHDQVIKVIHDCRNDAANL--YLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISL 666

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTV 167
             + E         K +  +      K   +    R    Y  GDV V
Sbjct: 667 NSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLV 714


>gi|145336746|ref|NP_175846.3| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|110741918|dbj|BAE98900.1| hypothetical protein [Arabidopsis thaliana]
 gi|160892399|gb|ABX52079.1| RRP6-like protein 1 [Arabidopsis thaliana]
 gi|332194981|gb|AEE33102.1| RRP6-like protein 1 [Arabidopsis thaliana]
          Length = 637

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 47/193 (24%), Gaps = 31/193 (16%)

Query: 32  LFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           L           + D       +   L+E  ++     V H +  +   L+  F + +  
Sbjct: 155 LMQISTRTED-YIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYV-- 211

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T   +R   L                     + L+  +C    ++     +    
Sbjct: 212 CNLFDTGQASRVLKLERN----------------SLEFLLKHYCGVAANKEYQKADWRIR 255

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                +   Y + D      I+  +                  D     D  L     + 
Sbjct: 256 PLP-DVMKRYAREDTHYLLYIYDVMRMELH--------TMAKEDEQS--DSPLVEVYKRS 304

Query: 211 VDVERTKLDQELE 223
            DV     ++EL 
Sbjct: 305 YDVCMQLYEKELW 317


>gi|38681451|gb|AAB49975.2| egalitarian [Drosophila melanogaster]
          Length = 993

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 50/168 (29%), Gaps = 16/168 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            + +D E    I+L   G         + L   G       L+D    P M     LK  
Sbjct: 546 VVSLDCE---GINLGLKG--------EITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTV 594

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+  V  V H+   +   L       I +     T           + K V +A  +S 
Sbjct: 595 LEHDQVIKVIHDCRNDAANL--YLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISL 652

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTV 167
             + E         K +  +      K   +    R    Y  GDV V
Sbjct: 653 NSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLV 700


>gi|33589402|gb|AAQ22468.1| RE33408p [Drosophila melanogaster]
          Length = 1004

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 50/168 (29%), Gaps = 16/168 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            + +D E    I+L   G         + L   G       L+D    P M     LK  
Sbjct: 557 VVSLDCE---GINLGLKG--------EITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTV 605

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+  V  V H+   +   L       I +     T           + K V +A  +S 
Sbjct: 606 LEHDQVIKVIHDCRNDAANL--YLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISL 663

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTV 167
             + E         K +  +      K   +    R    Y  GDV V
Sbjct: 664 NSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLV 711


>gi|332185190|ref|ZP_08386939.1| ribonuclease D [Sphingomonas sp. S17]
 gi|332014914|gb|EGI56970.1| ribonuclease D [Sphingomonas sp. S17]
          Length = 392

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 54/199 (27%), Gaps = 40/199 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             + +D E     T                   + L     D       D     +    
Sbjct: 24  DFITVDTEFMRESTYW---------------PELCLIQIA-DTQEAAAIDPKAPGLDMTP 67

Query: 57  LKEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           L + L  N +V  V H    +  ++          H    T + A + G        GE 
Sbjct: 68  LLDLLVNNDEVLKVFHAGGQDIEIIYNLTGKT--PHPLFDTQIAAMALGQ-------GEQ 118

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           +  S+        L  +  KG        R     +        Y  GDVT   +IF R+
Sbjct: 119 IGYSNLVDSW---LGIQVDKGARFTDWSRRPLDQRQVD------YAIGDVTHLSDIFPRM 169

Query: 176 EPLSSKEQELWYLDQTIND 194
                K     +LDQ +  
Sbjct: 170 LERLRKTGRGAWLDQEMER 188


>gi|258592196|emb|CBE68505.1| DEAD/DEAH box helicase domain protein [NC10 bacterium 'Dutch
           sediment']
          Length = 980

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 47/178 (26%), Gaps = 27/178 (15%)

Query: 4   LFIDFET-RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           +  D ET RS  D+   G          +   +  D     ++       +   L  A  
Sbjct: 798 IVFDLETQRSAEDV--GGWEHRHRMGLAVGVVYDLDRAEFRVYTERQVDALINDLVRA-- 853

Query: 63  NTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTL-VLARSNGLPSALKAVGEALKLSS 120
                IV  N   F+  VL+A  +LD      +  L  + R  G    L  +        
Sbjct: 854 ---RLIVGFNVRRFDFDVLRAYADLDWNALPALDILECIHRRLGFRLKLDHLA------- 903

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                                                 EYCK DV +T+ ++      
Sbjct: 904 ----------QETLGERKSADGLQSLAWFKAGEIERVIEYCKQDVLLTKRLYDFGRQH 951


>gi|4585987|gb|AAD25623.1|AC005287_25 Similar to nucleolar protein [Arabidopsis thaliana]
          Length = 642

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 47/193 (24%), Gaps = 31/193 (16%)

Query: 32  LFAFGFDDHPVELWDCVH-DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           L           + D       +   L+E  ++     V H +  +   L+  F + +  
Sbjct: 155 LMQISTRTED-YIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYV-- 211

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
                T   +R   L                     + L+  +C    ++     +    
Sbjct: 212 CNLFDTGQASRVLKLERN----------------SLEFLLKHYCGVAANKEYQKADWRIR 255

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                +   Y + D      I+  +                  D     D  L     + 
Sbjct: 256 PLP-DVMKRYAREDTHYLLYIYDVMRMELH--------TMAKEDEQS--DSPLVEVYKRS 304

Query: 211 VDVERTKLDQELE 223
            DV     ++EL 
Sbjct: 305 YDVCMQLYEKELW 317


>gi|54308269|ref|YP_129289.1| ribonuclease D [Photobacterium profundum SS9]
 gi|46912697|emb|CAG19487.1| hypothetical ribonuclease D [Photobacterium profundum SS9]
          Length = 374

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 76/258 (29%), Gaps = 54/258 (20%)

Query: 6   IDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           +D E   TR+     K G+ +  +   ++L        P+E+ D            + L 
Sbjct: 27  LDTEFVRTRTLYP--KLGLIQMFDGDNLVLI------DPIEIDDLTP-------FWDLLR 71

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-----SALKAVGEALK 117
           +  +  V H    +  V +            I T ++A   G        +L  V E + 
Sbjct: 72  DQSIIKVLHACGEDLEVFQHHAG--CLPTPMIDTQLMAAFLGHGVSAGFGSL--VSEYVG 127

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK---- 173
           +  +K   G+       +  T                    +Y   DV     +++    
Sbjct: 128 VDLEK---GEARTNWLARPLT----------------DKQLDYAAADVFYLLPLYETLLE 168

Query: 174 --RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
             + +      +           +G  +D+  A+ L +       K    L+      + 
Sbjct: 169 KVKAKGWMEALELECAALMQKRTKG--IDLDKAYRLVKNAWQLNPKQLAVLQQAAKWRIL 226

Query: 232 SSRCLEKLKTWLFLETGL 249
            +R  +    ++  E  +
Sbjct: 227 EARKRDIALNFVVKELHI 244


>gi|17229189|ref|NP_485737.1| hypothetical protein all1697 [Nostoc sp. PCC 7120]
 gi|17135517|dbj|BAB78063.1| all1697 [Nostoc sp. PCC 7120]
          Length = 302

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 63/230 (27%), Gaps = 40/230 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-----DHPVELWDCVHDPVMPQVL 57
           TL+ID E               + +  + L     D        V L D +  P +    
Sbjct: 22  TLWIDTE----------VADYKSRNPRLSLIQVLDDPNDMSGDRVYLLDVLDQPDLVADF 71

Query: 58  K-EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA----RSNGL--PSALK 110
             + + NT++  V HN+ F+  +L              CTL +A              L+
Sbjct: 72  VDKIMVNTNIEKVFHNANFDVKLLGNK-----QARNITCTLEIAKKIPYYLLPVQNYQLQ 126

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           ++              K L       +  +      +P   E        C     + R 
Sbjct: 127 SLA-------------KLLCNFNNIDKQEQGSNWGQRPLSEEQIEYAYLDCIYLAQIHRR 173

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
           + +     +   + L                 L ++  + +  +  K  Q
Sbjct: 174 LLELQIESNPDPETLDITVINSRFSQIEEQWKLLNSEYEYLQEQLKKAMQ 223


>gi|325183710|emb|CCA18169.1| exosome complex exonuclease RRP6like protein putativ [Albugo
           laibachii Nc14]
          Length = 770

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 47/177 (26%), Gaps = 32/177 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E              Y       L      +H   L D +      Q+L +   +
Sbjct: 244 LAIDLE--------HHNYRSYLGLT--CLMQISTHNHD-FLVDTLALRSSLQLLNQVFCD 292

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
                V H +  +   L+      + +     T   AR   LP  +L             
Sbjct: 293 PQKLKVLHGADMDILWLQRDLG--LYVVNMFDTGRAARVLQLPRFSLA------------ 338

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                 L+ + C  E  +     +             Y + D      I+++++   
Sbjct: 339 -----YLLKKCCDIEADKQYQLADWRQRPL-TEEMTRYAREDTRYLLFIYRKMKEEL 389


>gi|221134772|ref|ZP_03561075.1| ribonuclease D [Glaciecola sp. HTCC2999]
          Length = 382

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 40/214 (18%)

Query: 3   TLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            + +D E   TR+       G+ +  + V + L        P+ + D          L +
Sbjct: 26  VIAVDTEFVRTRTFYP--HIGLVQIYDGVDIALI------DPIAIDDLSP-------LSQ 70

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            + N  V  V H    +    +      +       T V A+  GL ++           
Sbjct: 71  LMTNPQVIKVLHACSEDLETFEFALG--VMPEPLFDTQVAAQLAGLGNS----------- 117

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L+         +     +      +      Y   DV      + +L    
Sbjct: 118 ----VGYGRLVELLQDITLEKGESRTDWIRRPLSPEQLI-YAAEDVLYLLPCYFKLAEKL 172

Query: 180 SK----EQELWYLDQTINDRGYCVDVALAHTLNQ 209
                       ++Q I  +   +D   A+ L +
Sbjct: 173 EASQQLHWVYDEVNQLIRRKRANIDPKHAYLLLK 206


>gi|89075742|ref|ZP_01162130.1| hypothetical ribonuclease D [Photobacterium sp. SKA34]
 gi|89048474|gb|EAR54049.1| hypothetical ribonuclease D [Photobacterium sp. SKA34]
          Length = 363

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 74/253 (29%), Gaps = 26/253 (10%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D +    M + L   L +  V  V H    +  V +              T
Sbjct: 35  FDGEQLSLIDPIEVEDM-EPLWALLRDQSVIKVLHACGEDLEVFQHHAG--CLPTPMFDT 91

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +        +    ++++G+       +  T                  
Sbjct: 92  QLMAAFLGHGISTGFGALVKEYVGVELDKGEARTNWLARPLT----------------AK 135

Query: 157 FGEYCKGDVTVTREIFK----RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             +Y   DV   + +F+    ++E     E         +  R   VD   A+   +   
Sbjct: 136 QLDYAAADVYYLKPLFETLLAKVEKRGYMEALQQECQSVMQRRIKPVDPEKAYLDIKNAW 195

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
               +    L+ +    V  ++  +    ++  E  L           +  +  +K   +
Sbjct: 196 QLTPQQLSVLQKVAAWRVREAQKRDIALNFIVKELHLW---KLARFNIKSRAGLEKEDFE 252

Query: 273 AIQVFNNRMRASR 285
            +++  +  R  +
Sbjct: 253 PMEIQRHGNRLLK 265


>gi|259417863|ref|ZP_05741782.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259346769|gb|EEW58583.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 243

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 52/197 (26%), Gaps = 58/197 (29%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMP 54
           M  + +D ET         G   ++ D  ++      +                 +  MP
Sbjct: 1   MREIVLDTETT--------GFDPFSGD-RIVEIG-AVELLNHMPTGETFHVYINPERSMP 50

Query: 55  QVLK-------EALENTD-------VTI---------------------VAHNSYFERTV 79
                      + LE                                  V HN+ F+   
Sbjct: 51  HEAFGVHGIGPDLLEPPQPAAPGQVTLKDKPLFAEVGQAFLDFVRDSKMVIHNASFDMKF 110

Query: 80  LKACFNL----DIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIAR 132
           L A         +P+ + I TL +A  R  G P+ L A+     + +  +   G  L + 
Sbjct: 111 LNAELGWMNLRQLPMEQAIDTLAMARKRFPGSPATLDALCRRFSIDNSNRTLHGALLDSE 170

Query: 133 FCKGETHECLYDRNKPN 149
                  E +  R    
Sbjct: 171 ILADVYLELIGGRQPDF 187


>gi|182626433|ref|ZP_02954185.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908230|gb|EDT70788.1| seryl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 302

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 25/151 (16%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDP 51
           M  + IDFET          I LT     K  E+    +      F    + +     + 
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKNNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
                    + + +K+ +      ++AHN+ F+ +VL+     +++  P   + CT+V+A
Sbjct: 61  VENERTFNEIWEEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDILYPDFEYACTVVMA 118

Query: 101 ---RSNGLPSALKAVGEALKLSSQKMEEGKE 128
                +     L  V EAL         G++
Sbjct: 119 KNYYKSLPNHKLGTVSEALGFEFSHHHAGED 149


>gi|159044436|ref|YP_001533230.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12]
 gi|157912196|gb|ABV93629.1| putative ribonuclease D [Dinoroseobacter shibae DFL 12]
          Length = 385

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 57/209 (27%), Gaps = 44/209 (21%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVM 53
             + +D E     T                   + L    +    +    L D + + + 
Sbjct: 21  DYVTVDTEFLRERTYY---------------AKLCLVQLAYPGEGEETAVLVDPLAEGMS 65

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
              + +   N DV  V H +  +  +        +       T V A   G        G
Sbjct: 66  LAPMLDLFRNPDVVKVFHAARQDLEIF--FVEHGVFPEPLFDTQVAAMVCGF-------G 116

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +          + L+ +  +    +     +  +   +     +Y   DVT  R I++
Sbjct: 117 EQVGY--------ETLVRKIARESLDKTSRFTDWSHRPLSKAQ-KKYALADVTHLRVIYE 167

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            L     K     ++     +    +D  
Sbjct: 168 YLAAAIDKTGRRAWV---EEELQGLLDPE 193


>gi|324501716|gb|ADY40761.1| Exosome component 10 [Ascaris suum]
          Length = 892

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 36/149 (24%), Gaps = 22/149 (14%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L     D+    + D        Q+L E   N ++  V H S ++   L+  F + +   
Sbjct: 311 LMQISTDEKD-YIIDPFPIWNDMQILNEPFTNPNILKVFHGSEYDVQWLQRDFGIYV--V 367

Query: 92  RWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
               T            +L  + ++                   K         R     
Sbjct: 368 GMFDTFCAMHVLNFAKYSLAHLVQS------------ICNVTLDKELQKADWRVRPLTTA 415

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                   EY + D       +  L    
Sbjct: 416 HI------EYARSDTHYLLYCYDTLRQRL 438


>gi|307177174|gb|EFN66407.1| Exosome component 10 [Camponotus floridanus]
          Length = 1189

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 42/179 (23%), Gaps = 32/179 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEA 60
             + +D E              Y     +         +    L D +        L E 
Sbjct: 253 KEIAVDLE-----------HHSYRTFQGITCLMQISTVNTD-YLIDTLALRSELHQLNEI 300

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
                +  + H +  +   L+   +L + +     T   A+   LP     +  A  L+ 
Sbjct: 301 FTKPTILKIFHGADMDILWLQR--DLSLYVVNMFDTHQAAKQLNLPY----LSLAYLLNK 354

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                             H  L D       E       Y + D      I   L+   
Sbjct: 355 Y----------CGINPNKHFQLADWRIRPLPEELMK---YAREDTHYLLHIKDMLKNEL 400


>gi|21230449|ref|NP_636366.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769557|ref|YP_244319.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992765|ref|YP_001904775.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112012|gb|AAM40290.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574889|gb|AAY50299.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734525|emb|CAP52735.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           campestris]
          Length = 245

 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 45/156 (28%), Gaps = 45/156 (28%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYAE---DVC-----VILFA 34
           M  + +D ET          +                   +Y     D       V    
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDCDFEPGAQEVTGLT 60

Query: 35  FGF-DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNL 86
             F  D PV          + +     +      ++ HN+ F+   L          F  
Sbjct: 61  LEFLADKPVF-------AEVVEEFLAYI--DGAELIIHNAAFDLGFLDNELSLLGDQFGR 111

Query: 87  DIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS 120
            I     + TL++A  R  G  ++L A+ + L + +
Sbjct: 112 IIDRATVVDTLMMARERYPGQRNSLDALCKRLGVDN 147


>gi|150951537|ref|XP_001387875.2| ribosomal RNA processing 3'-5' exonuclease [Scheffersomyces
           stipitis CBS 6054]
 gi|149388676|gb|EAZ63852.2| ribosomal RNA processing 3'-5' exonuclease [Pichia stipitis CBS
           6054]
          Length = 792

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 47/178 (26%), Gaps = 32/178 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D E              Y     ++        D    + D +      + L    
Sbjct: 254 EIAVDLE-----------HHDYRSYYGIVCLMQISNRDQD-WIIDTLALRDDLECLNTVF 301

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +  V H ++ +   L+    L I       T   +             ++L     
Sbjct: 302 TNPHIVKVFHGAFMDIIWLQRDLGLYI--VSLFDTYHAS-------------KSLGFPKF 346

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +    E  A F   + ++    R +P           Y + D      IF +L+   
Sbjct: 347 SLAYLLETFAHFKTSKKYQLADWRIRPLSP----PMMAYARSDTHFLLSIFDQLKNKL 400


>gi|254519816|ref|ZP_05131872.1| exonuclease [Clostridium sp. 7_2_43FAA]
 gi|226913565|gb|EEH98766.1| exonuclease [Clostridium sp. 7_2_43FAA]
          Length = 209

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 32/132 (24%), Gaps = 33/132 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVIL-------FAFGFD--DHPVELW------ 45
           M  LF D ET S      C +     D  V         F F  D  D   E        
Sbjct: 1   MKLLFFDTETTSIKPGNICQLSYIVIDASVKPQKTIGKNFFFTVDSMDEGAEAIHGFSLE 60

Query: 46  ---DCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKA-------CFNLDI--PI 90
              D                   + D   + HN  F+   LK           +D     
Sbjct: 61  KLYDLSEGKEFLDCVHEFMPDFFDADFI-IGHNVQFDIKFLKHELQQLWEAGLIDTTWEP 119

Query: 91  HRWICTLVLARS 102
               CT+  A  
Sbjct: 120 KNTFCTM--AYY 129


>gi|183602347|ref|ZP_02963713.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|241191299|ref|YP_002968693.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196705|ref|YP_002970260.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218266|gb|EDT88911.1| possible exonuclease [Bifidobacterium animalis subsp. lactis HN019]
 gi|240249691|gb|ACS46631.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251259|gb|ACS48198.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794292|gb|ADG33827.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 188

 Score = 50.9 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 39/152 (25%), Gaps = 41/152 (26%)

Query: 1   MATLFIDFETRS---PIDLTKCGICKYAEDVCVI-------------------LFAFG-- 36
           M  + +D ET       D           D  ++                   L      
Sbjct: 9   MNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQLVNPGRRVSARITELTGISNE 68

Query: 37  -FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIHRW- 93
             +D PV          +        EN  +  V HN+ F+ + L      +     R+ 
Sbjct: 69  MLEDQPVI-------EDILGDFIHWTENDRL--VGHNTKFDLSFLIANAERVFSDSTRFS 119

Query: 94  ---ICTLVLARSNGLP--SALKAVGEALKLSS 120
              I T+ + R         L  + +   +  
Sbjct: 120 VRPIDTMHIDRLLFPSERHRLVDLIQRYGIGD 151


>gi|262212363|gb|ACY35798.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212401|gb|ACY35817.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212413|gb|ACY35823.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212415|gb|ACY35824.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342105|gb|ACY54563.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342275|gb|ACY54648.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342277|gb|ACY54649.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342281|gb|ACY54651.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342287|gb|ACY54654.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342291|gb|ACY54656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342293|gb|ACY54657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342297|gb|ACY54659.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342301|gb|ACY54661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342307|gb|ACY54664.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 65/275 (23%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|168005501|ref|XP_001755449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693577|gb|EDQ79929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 824

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 67/583 (11%), Positives = 134/583 (22%), Gaps = 90/583 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
             + +D E              +       + L           L D +       +L  
Sbjct: 86  KEIGVDIE------------HHHVRSFRGFIPLIQISTYSTD-YLVDAIALHDDMHLLHP 132

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
              N  +  + H +  +   L+   +  I I     T   AR+             L   
Sbjct: 133 IFANPAILKIFHGADNDSLWLQR--DFHIYIVNLFDT---ARACD----------VLGKP 177

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            + +     L+  +C   T +     +             Y + D      I + +    
Sbjct: 178 QRSLAY---LLQLYCGVSTKKIYQRSDWRVRPLP-AEMEIYARTDAHYLLYIAQCMRANL 233

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKL 239
            +      L                + L   V      + Q+L        SSS  +  +
Sbjct: 234 VQACNTPSLLND-------------NQLLLEVVRRSNAVCQQLYEKEGVGDSSSAVVASI 280

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKL-----NTL 294
              L+            +        +  L     ++   R   +R+    L     +  
Sbjct: 281 LGRLYNN----------SNSAMRGEEDAYLRRLVQKLVEWRDALARAEDESLRFVMSDAA 330

Query: 295 VEAMNSDGRL----RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
           + A+  +  L      +        +      V   Q LP PS   +E   ++  +    
Sbjct: 331 LLAVAKERPLTEESILSTIISTDELSRASETAVPGLQPLPSPSPVVQEHVGLLCDILWDF 390

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
             DP           +            AD    +   +  +    +          +  
Sbjct: 391 AEDPKDDVWPWRSTTNLSNP--------ADSLYEKFCSILHIPSISFLWGKSWVRRTIPK 442

Query: 411 TTYARSFNVAPAQVTKDQRAIGKVMELALGY-QGGAKAFQKMASTT---GLNLN---TFA 463
                +   A  Q  K       V      Y   G              GL  +      
Sbjct: 443 KWRVGNAEQARLQFVKKFSCKAPVYHNCRIYAGDGHVRSAMFLRRYIKRGLAEDMNEEPP 502

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSR------- 516
            +          ED  N     ++++      +         +   +RQ           
Sbjct: 503 AIRLLFEPKGRPEDENNEFYISRKSNRCVGCGESSHYLRYRIIPSCYRQHFPEHLKSHRS 562

Query: 517 --VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNN 557
             +  L  + H+   +  E  K  I  +       +   D  N
Sbjct: 563 HDIVLLCVDCHEVAHKAAEKHKREIVVQFGVPLFAHRVVDGGN 605


>gi|332528386|ref|ZP_08404380.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
           19624]
 gi|332042149|gb|EGI78481.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
           19624]
          Length = 252

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 48/162 (29%), Gaps = 36/162 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFA---------FGFDDH--------PVE 43
           M  + +D ET     L+  G  +  E  CV L           F F+           V 
Sbjct: 1   MRQIVLDTETTG---LSAEGGDRIIELGCVELLNRKLSGNNLHFYFNPGRDSHEDALRVH 57

Query: 44  LW------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI------H 91
                   D      + Q +   L+     ++ HN+ F+   L     L           
Sbjct: 58  GISNEFLRDKPKFAEVAQEILAYLQ--GAELIIHNAAFDVGFLNKELELIGKPALHTFVG 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
               TL +A+        +L A+ + L + +        L+ 
Sbjct: 116 GITDTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLD 157


>gi|300858616|ref|YP_003783599.1| ribonuclease D [Corynebacterium pseudotuberculosis FRC41]
 gi|300686070|gb|ADK28992.1| Ribonuclease D [Corynebacterium pseudotuberculosis FRC41]
 gi|302206328|gb|ADL10670.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis C231]
 gi|302330885|gb|ADL21079.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis 1002]
 gi|308276570|gb|ADO26469.1| Ribonuclease D protein [Corynebacterium pseudotuberculosis I19]
          Length = 401

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 70/249 (28%), Gaps = 48/249 (19%)

Query: 12  SPIDLTKCGICKYAEDVCVILFAFGFDD------------HPVELWDCVHDPVMPQVLKE 59
           S   L + G+  +A D       F +DD              V +   VH   + Q L +
Sbjct: 24  SAARLLESGVGPFAIDTE-RASGFRYDDRAFLLQIRRRQAGTVLIDPSVHPEAVTQHLGK 82

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKL 118
           A+     T + H +  +   L+    L +       T +  R  G+P   L A+ E    
Sbjct: 83  AIN--SHTWIIHAAPSDLPCLRE---LGLRPSNIFDTELAGRLMGMPRVNLAAMSEE--- 134

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                  G  L+             D ++      W     Y   DV    ++   +  L
Sbjct: 135 -----IVGLTLL-------KGHGAEDWSRRPLPIDW---LNYAALDVETLLDLADAMAEL 179

Query: 179 SSKEQELWYLDQTIND-----------RGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
              + +L + +Q                   VD+    ++N    +   +          
Sbjct: 180 LDSQGKLEWAEQEFEHLVRMEYENPRQPKQWVDLKGIGSINDPEQLIVAREIWNAREKEA 239

Query: 228 GLVSSSRCL 236
                +   
Sbjct: 240 CETDKAASR 248


>gi|254571647|ref|XP_002492933.1| DNA polymerase gamma [Pichia pastoris GS115]
 gi|238032731|emb|CAY70754.1| DNA polymerase gamma [Pichia pastoris GS115]
 gi|328353057|emb|CCA39455.1| DNA polymerase gamma 1 [Pichia pastoris CBS 7435]
          Length = 1012

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 74/757 (9%), Positives = 175/757 (23%), Gaps = 130/757 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEA--L 61
           F D ET     + K           V+  A         +      +      L      
Sbjct: 144 FFDVET-----MYKVSQYP------VMAVALSDKAWYGWVSPYLTEESTTNDHLIPLNTF 192

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL------------------------ 97
           E      V HN  ++R      +NL      W+ T+                        
Sbjct: 193 ETEKFI-VGHNVSYDRARALEEYNLKQTKAFWMDTMALHVSVSGMCTRQRGTWIKHNKKE 251

Query: 98  ---------VLARSNGLPSA--LKAVGEALKLSSQ-------KMEEGKELIARFCKGETH 139
                    + ++         L +      +           +   + +   +CK +  
Sbjct: 252 QENTMSVASIKSKVQNEELQELLDSTSIEDPMLEDNPWINKSSLNSLERVAEFYCKIKLK 311

Query: 140 ECLYDRNKPNHREAW----RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
           + + +       +          +YC  DV  T ++F+++ P   K          + D 
Sbjct: 312 KDIRNSFATEDPDELRGNFDELMQYCAKDVFATGKVFQKVYPKFKKLIPHPVSLAALKDI 371

Query: 196 GYCVDV---------ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL- 245
             C+             +  L Q       K    +   T  L        +   WL   
Sbjct: 372 SSCILPTTTKWEDYIETSERLYQESRRMIEKNLHVICEETVKLKDDPTKPWENDPWLSQL 431

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           +  +    LT+              P   +    +     +   + + L+  +  +G   
Sbjct: 432 DWTIDPIRLTKKGEIHKNQKLPG-YPNWYKQLIVKNELKLTTKTRTSPLLLKLAWNGNPL 490

Query: 306 GTLQFLGA------------------SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLP 347
             +Q  G                     + +        +++      +    ++     
Sbjct: 491 YWIQTQGWCFKVPKNKTEEYEKLNFVMVSLKKLSEDPGFESIRAEDLKNFTFVKVPHPDG 550

Query: 348 TSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGED 407
            S        +          +    +  +  D   +      W +  +  +  F   ED
Sbjct: 551 PSARVTNCMTKSCLGFFEKGFL--NSQYPLAKDALQMAVASSYWTSSRERIMNQFVVFED 608

Query: 408 LYVTTYARSFNVAPAQVTKDQRAI-----GKVMELALGYQGGAKAFQKM---ASTTGLNL 459
                  +   +        +         K   L    +   +A +      +      
Sbjct: 609 DMGYILPQIIPMGTITRRAVENTWLTASNAKKNRLGSELKSLIEAPKGYCFVGADVDSEE 668

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHP------EHAIEDLFIGTACERVKKAWRQK 513
              A L+  +        A  +       +       + A          +     + + 
Sbjct: 669 LWIASLIGDSVFKIHGGTAIGWMTLEGTKNEGTDLHSKTAKILGISRNEAKIF--NYGRI 726

Query: 514 HSR--------VSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
           +          + +    L  A  +   N      +               +  +     
Sbjct: 727 YGAGIKFTTTLLKKFNPALSDAEAKATANALYTATKGISGRYDKKSIWYGGSESI--IFN 784

Query: 566 RSLVYRDVGNNRSYLNTTTRQLTREYTY------GGKLTENIVQAVSRD---ILAEGM-- 614
           R     ++ + ++ +         +                 +Q+   D   +L   M  
Sbjct: 785 RLEAIAEMAHPKTPVLGAGITAPLQKANLSTNNFLTSRINWAIQSSGVDYLHLLIISMDY 844

Query: 615 -MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
            +        + +TVHDEI     + D+F A+    +
Sbjct: 845 LIKLFDIDARLCITVHDEIRYLVKEEDKFRAAYALQI 881


>gi|148807520|gb|ABR13563.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 44/172 (25%), Gaps = 28/172 (16%)

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
             +    +++   L    G+  +  TE     V     +                +    
Sbjct: 46  EFNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPEAKLIYEYLMLQKRAA 104

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
           ++++ +     DGR+ G +   GA  TGR +        +P  S                
Sbjct: 105 QIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAP-------------- 148

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADL-AGIEARVLAWMAGEQWKLK 400
                          RS     EG KL+            LA    ++    
Sbjct: 149 ----------YGRECRSFWCVPEGHKLIGCGCPVAXNYACLAHYMRDESIHH 190


>gi|148825327|ref|YP_001290080.1| ribonuclease D [Haemophilus influenzae PittEE]
 gi|148715487|gb|ABQ97697.1| translation-associated GTPase [Haemophilus influenzae PittEE]
          Length = 380

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 47/161 (29%), Gaps = 27/161 (16%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           +D   V L D        P      L N  V  + H+   +  V    F  D      I 
Sbjct: 55  YDGERVSLIDPLAITDFSP--FIALLANPKVLKILHSCSEDLLVFLQEF--DQLPRPMID 110

Query: 96  TLVLARSNGLPSA--LKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           T ++AR  GL ++  L  +  + L +   K       I R                    
Sbjct: 111 TQIMARFIGLGASAGLAKLAQQYLNIEIDKGATRTNWIKRPLS----------------- 153

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
              +  +Y  GDV     ++  LE   +K      +     
Sbjct: 154 --DIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCE 192


>gi|82753264|ref|XP_727606.1| ribonuclease D [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483534|gb|EAA19171.1| Ribonuclease D [Plasmodium yoelii yoelii]
          Length = 510

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 79/244 (32%), Gaps = 33/244 (13%)

Query: 23  KYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
           K  E+  + L     +D   V   + ++   +P  +K  LEN  +  V H+   ++ +  
Sbjct: 174 KIIENKKLCLIQLCSNDICFVFNINNLNGE-IPLSVKTVLENKKIIKVCHDIKNDQDMF- 231

Query: 82  ACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
              + +I I+      +   S      P +L+ + +            K L     K   
Sbjct: 232 --LSKNIKINNVFD--LYNYSIDNYIYPPSLQNLVK------------KYLKKHLDKEYR 275

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
                 +N    +  +     Y   +V ++ E   +++                N+    
Sbjct: 276 LSNWLCKNLNEEQIMYAANDSYASREVYISLEKQNKIDQSFFINLNNENCYVKHNE---- 331

Query: 199 VDVALA------HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
           V+            L+    + +  ++ E+ +     + + + L+  K    L+     +
Sbjct: 332 VNKICLNENPEYEKLSSKNKIVQNDINHEMINYKNNAIFN-KSLQNEKASQCLQLEKTFD 390

Query: 253 DLTE 256
           D T+
Sbjct: 391 DKTK 394


>gi|149912883|ref|ZP_01901417.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b]
 gi|149813289|gb|EDM73115.1| DNA polymerase III, epsilon subunit [Roseobacter sp. AzwK-3b]
          Length = 244

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 54/190 (28%), Gaps = 42/190 (22%)

Query: 1   MATLFIDFETRSPID--------LTKCGICKYA------------------EDVCVILFA 34
           M  + +D ET             +    +  +                   E   V    
Sbjct: 1   MREIVLDTETTGFDPEQGDRIVEIGALELYNHMPTGRTFHHYINPGRGMPQEAFEVHGIG 60

Query: 35  FGFDD-------HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL- 86
               D         + L D      +     E + N  +  V HN+ F+   L A     
Sbjct: 61  PDLLDAPRPPRPGEITLRDKPPFDHVANAFIEFVGNAKL--VIHNAAFDMKFLNAELGWL 118

Query: 87  DIPIHRW---ICTLVLAR--SNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHE 140
            +P+  W   I TL +AR    G P++L A+     + +  +   G  L +        E
Sbjct: 119 KLPLLPWEQAIDTLAIARQKFPGSPASLDALCRRFAIDNTARTLHGALLDSEILAEVYLE 178

Query: 141 CLYDRNKPNH 150
            +  R     
Sbjct: 179 LIGGRQPDFA 188


>gi|21241847|ref|NP_641429.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107228|gb|AAM35965.1| DNA polymerase III epsilon chain [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 244

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 43/155 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYAE---DVC-----VILFA 34
           M  + +D ET          +                   +Y +   D       V    
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLD 87
             F               +       +      ++ HN+ F+   L          +   
Sbjct: 61  LEFLADK----PLF--GEVVDEFLAYI--DGAELIIHNAAFDLGFLDNELALLGDHYGRI 112

Query: 88  IPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS 120
           +     + TL++A  R  G  ++L A+ + L + +
Sbjct: 113 VERATVVDTLMMARERYPGQRNSLDALCKRLGVDN 147


>gi|253577523|ref|ZP_04854836.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843063|gb|EES71098.1| DnaQ family exonuclease [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 951

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 29/121 (23%)

Query: 1   MATLFIDFETR---SPIDLTKCGICKYAED------------------VCVILFAFGFDD 39
           M    +DFET    S  D+ + G+     D                    +     G  D
Sbjct: 1   MKYAVLDFETTGNQSSDDIIQVGLAIIEPDRSISQVYRSFVKPGVPIPPFITGLT-GITD 59

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICT 96
             V+  D      +   +   L +  V +V HN  F+   L++            R + T
Sbjct: 60  EDVK--DAPELDEVMMEMVPLLND--VVLVGHNVAFDFNYLQSALDKTGYLPFTGRILDT 115

Query: 97  L 97
           +
Sbjct: 116 M 116


>gi|241203984|ref|YP_002975080.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857874|gb|ACS55541.1| ribonuclease D [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 381

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 66/240 (27%), Gaps = 34/240 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           + +      + L         V +       +      E +
Sbjct: 19  DFITIDTE----------FLRETTFWPELCLIQMASPRTEVLVDPLAKG-IDLAPFFELM 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +T V  V H +  +  ++    N  +  H    T V A   G      +V     +S  
Sbjct: 68  ADTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFG---DSVSYDQLVSRI 122

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K            K         R   + +        Y   DVT  R+++  L+    +
Sbjct: 123 KNVHI-------DKSSRFTDWSRRPLSDKQLD------YALADVTHLRDVYLSLKAELDR 169

Query: 182 E----QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           E         +D   +   Y +    A    + + + + +    L+ +       +R   
Sbjct: 170 EGRSSWLSEEMDILESRETYDMHPDDAWQRLK-MRLRKPQELAILKYVAAWREREARARN 228


>gi|18310383|ref|NP_562317.1| DNA polymerase III subunit epsilon [Clostridium perfringens str.
           13]
 gi|18145063|dbj|BAB81107.1| probable DNA polymerase III epsilon chain [Clostridium perfringens
           str. 13]
          Length = 302

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 25/151 (16%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAED--VCVILFAFGFDDHPVELWDCVHDP 51
           M  + IDFET          I LT     K  E+    +      F    + +     + 
Sbjct: 1   MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
                    + + +K+ +      ++AHN+ F+ +VL+     +++  P   + CT+V+A
Sbjct: 61  VENERTFNEIWEEIKDYI--DGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMA 118

Query: 101 ---RSNGLPSALKAVGEALKLSSQKMEEGKE 128
                +     L  V EAL         G++
Sbjct: 119 KNYYKSLPNHKLGTVSEALDFEFSHHHAGED 149


>gi|322799595|gb|EFZ20873.1| hypothetical protein SINV_12011 [Solenopsis invicta]
          Length = 813

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 19/137 (13%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            L D +        L E      +  V H +  +   L+   +L + +     T   AR 
Sbjct: 312 YLIDTLTLRSELHRLNEIFTKPSILKVFHGADMDILWLQR--DLSLYVVNMFDTHQAARQ 369

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
             LP     +  A             LI ++C  + ++     +             Y +
Sbjct: 370 LNLPY----LSLAH------------LIKKYCDIDLNKQFQLADWRIRPLPLE-LTRYAR 412

Query: 163 GDVTVTREIFKRLEPLS 179
            D      I   L    
Sbjct: 413 EDTRYLLYIKDMLNNEL 429


>gi|62088052|dbj|BAD92473.1| exosome component 10 isoform 2 variant [Homo sapiens]
          Length = 431

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 311 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 367

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKEL 129
             +   L+  F   + +     T   AR   L   +L  + +    + S K  +  + 
Sbjct: 368 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADW 423


>gi|15964944|ref|NP_385297.1| ribonuclease D protein [Sinorhizobium meliloti 1021]
 gi|307301014|ref|ZP_07580783.1| ribonuclease D [Sinorhizobium meliloti BL225C]
 gi|15074123|emb|CAC45770.1| Probable ribonuclease D [Sinorhizobium meliloti 1021]
 gi|306903969|gb|EFN34555.1| ribonuclease D [Sinorhizobium meliloti BL225C]
          Length = 383

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 39/191 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + ID E     T  P+               + L           + D +   +     
Sbjct: 20  YITIDTEFLRETTFWPV---------------LCLIQMA-SPEMAVIVDPMAPGIDLAPF 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              + N DV  V H +  +  ++      ++  H    T V A   G      +V     
Sbjct: 64  FALMSNPDVVKVFHAARQDIEII-HHLG-NLIPHPIFDTQVAAMVCGFG---DSVSYDQL 118

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           ++  K E+         K         R   + +        Y   DVT  R+I++ L  
Sbjct: 119 VNRIKNEQI-------DKSSRFTDWSRRPLTDKQLD------YALADVTHLRDIYQYLTK 165

Query: 178 LSSKEQELWYL 188
              +E    +L
Sbjct: 166 ELDREGRSSWL 176


>gi|83772845|dbj|BAE62973.1| unnamed protein product [Aspergillus oryzae]
          Length = 1017

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 54/480 (11%), Positives = 116/480 (24%), Gaps = 86/480 (17%)

Query: 172 FKRLEPLSSKEQELWYLDQ-TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           +                DQ    +    V   +       +  +R  +  +L        
Sbjct: 531 YPLTWSDKYGWTFKVPRDQVKKFENQPVVLCDMTEEKIAELRDDRRHVYFKLPHKDGPQA 590

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
                L K     F    L          +  L  N           + R R     V+ 
Sbjct: 591 RCVNPLAKGYMQYFERGTL---SSQYALAKEALEMNAS----CSYWISARDRIMGQMVVY 643

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
            + + ++ +++   R                    PQ +P  + +   ++        + 
Sbjct: 644 KDEVQKSASNNAESRTGFIL---------------PQVIPMGTITRRAVENTWLTASNAK 688

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            +       +   +++ + A  G   V AD+   E   +A + G+               
Sbjct: 689 EN------RVGSELKAMIKAPPGYVFVGADVDSQEL-WIASLIGDAQFQIHGGNAIGFMT 741

Query: 411 TTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
              +++        T       R   KV      Y  G K    +      +++      
Sbjct: 742 LEGSKAAGTDMHSRTAKILGISRNDAKVFNYGRIYGAGVKFAASLLRQFNPSMSEKQTQE 801

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
                 +E + A    R + ++       + F+    E      R +   +         
Sbjct: 802 VATKLYQETKGARTTRRILSDSPFWRGGTESFVFNKLEEFADQERPRTPTL--------- 852

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                        A  RR +        + N  +       L    +      ++   R+
Sbjct: 853 -------GAGITEALMRRFINRGSFMTSRINWAIQSSGVDYLHLLII-----AMDYLIRR 900

Query: 587 LTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                                                + +TVHDEI     D D++ A++
Sbjct: 901 FNIAA-------------------------------RLAITVHDEIRYLVKDEDKYRAAL 929


>gi|262212367|gb|ACY35800.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212379|gb|ACY35806.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 64/275 (23%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K    A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTATYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|229472247|gb|ACQ72638.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 39/142 (27%), Gaps = 8/142 (5%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    A+ G  +V ADLAGIE R+LA          A   G            +   
Sbjct: 10  AEFRKLFTATPGMVMVGADLAGIELRMLAHYL-------ARFDGGRYGDVLINGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           A      R + K +  A  Y  G +                        +  +     + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQK 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               ++    +++  +   G  
Sbjct: 123 LVEAVKRKARQYSYINAIDGRR 144


>gi|294627921|ref|ZP_06706500.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666553|ref|ZP_06731794.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292597835|gb|EFF41993.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603697|gb|EFF47107.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 244

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 43/155 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYAE---DVC-----VILFA 34
           M  + +D ET          +                   +Y +   D       V    
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLD 87
             F               +       +      ++ HN+ F+   L          +   
Sbjct: 61  LEFLADK----PLF--GEVVDEFLAYI--DGAELIIHNAAFDLGFLDNELALLGDHYGRI 112

Query: 88  IPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS 120
           +     + TL++A  R  G  ++L A+ + L + +
Sbjct: 113 VERATVVDTLMMARERYPGQRNSLDALCKRLGVDN 147


>gi|332307210|ref|YP_004435061.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174539|gb|AEE23793.1| ribonuclease D [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 391

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 81/280 (28%), Gaps = 40/280 (14%)

Query: 4   LFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           + +D E   TR+     K G+ +             +D   + L D +        LK  
Sbjct: 25  IAVDTEFVRTRTLYP--KLGLIQI------------YDGQQIALIDPLEISDF-SALKAI 69

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L + ++  V H+   +          DI       +   A   G+ ++L           
Sbjct: 70  LTDENIVKVLHSCSEDIETFICAL--DIVPKPIFDSQFAAAIVGMGASLG---------- 117

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----RLE 176
                  +L+      +  +     +      +      Y   DV    +++     +  
Sbjct: 118 -----YAKLVEVMLDIQVDKGESRTDWLARPLSPEQ-CRYAAYDVLYLYQLYPTLRDKAR 171

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
               +      +D     +   +   L +   +     + K    L+ L       ++  
Sbjct: 172 AQGRQAWVFAEMDNLSRKKLSQIPYELLYLNIKNNWHVKGKSLYVLQQLAAWRAKEAQQR 231

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
           +    ++  ET L        T +  L     LTPQ I++
Sbjct: 232 DLALNFVVRETNLVEVAKKLPTSKNALHQISGLTPQEIRI 271


>gi|289177416|gb|ADC84662.1| DNA polymerase III, epsilon chain [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 190

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 42/143 (29%), Gaps = 23/143 (16%)

Query: 1   MATLFIDFETRS---PIDLTKCGICKYAEDVCVI-----------LFAFGFDDHPVELWD 46
           M  + +D ET       D           D  ++             +    +      +
Sbjct: 11  MNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQLVNPGRRVSARITELTGISNE 70

Query: 47  CVHDPVMPQVLK-EALEN-TDVTIVAHNSYFERTVL-KACFNLDIPIHRW----ICTLVL 99
            + D  + + +  + +    +  +V HN+ F+ + L      +     R+    I T+ +
Sbjct: 71  MLEDQPVIEDILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPIDTMHI 130

Query: 100 ARSNGLP--SALKAVGEALKLSS 120
            R         L  + +   +  
Sbjct: 131 DRLLFPSERHRLVDLIQRYGIGD 153


>gi|163738000|ref|ZP_02145416.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           BS107]
 gi|163742604|ref|ZP_02149990.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161384189|gb|EDQ08572.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161388616|gb|EDQ12969.1| DNA polymerase III, epsilon subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 245

 Score = 50.9 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 54/197 (27%), Gaps = 58/197 (29%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMP 54
           M  + +D ET         G   ++ D  ++      +                    MP
Sbjct: 1   MREIVLDTETT--------GFDPFSGD-RIVEIG-AVELLNHMPTGETFHVYINPQRSMP 50

Query: 55  QVLKEA--------------------LENTDV-TIVA--------------HNSYFERTV 79
           Q   +                     L +  V   V               HN+ F+   
Sbjct: 51  QDAFKVHGIGPDLLEPPQQPGPGAVTLRDKPVFAKVGQKFLDFVRDSKMVIHNAAFDMKF 110

Query: 80  LKACFNL----DIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIAR 132
           L A  +      +P+ + + TL +A  R  G P+ L A+     + +  +   G  L + 
Sbjct: 111 LNAELDWMGLPKLPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSE 170

Query: 133 FCKGETHECLYDRNKPN 149
                  E +  R    
Sbjct: 171 ILADVYLELIGGRQPDF 187


>gi|154301232|ref|XP_001551029.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10]
 gi|150856187|gb|EDN31379.1| hypothetical protein BC1G_10286 [Botryotinia fuckeliana B05.10]
          Length = 823

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 46/180 (25%), Gaps = 35/180 (19%)

Query: 3   TLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            + +D E   TRS + L               L      +    +          QVL E
Sbjct: 244 EIAVDLEHHDTRSYVGLVS-------------LMQVSTREKDWIVDTLKPWRQQLQVLNE 290

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
              + ++  V H +Y +   L+      + +     T     +      L   G +L   
Sbjct: 291 VFADPNIIKVFHGAYMDIVWLQRDLG--LYVVGLFDT---HYAC---RRLGFAGGSLAFL 342

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +K  +         K         R  P           Y + D      IF  L    
Sbjct: 343 LKKYIDFDA-----DKKYQLADWRIRPLP------EEMFFYARADTHFLLYIFDNLRNEL 391


>gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
 gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
          Length = 1483

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 25/141 (17%)

Query: 4   LFIDFETRS---PIDLTKCGICKYAEDVCVI-----------LFAFGFDD----HPVELW 45
           +  D ET       D           +  ++              F  ++        + 
Sbjct: 460 IVFDIETTGFSAKNDAITEIGAVKVVNGEIVDRFSTFVNPKRPIPFRIEELTHISDAMVV 519

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICTLVLARSN 103
           +      +     +  E+   TIVAHN+ F+   ++     ++   +   I T+ +AR  
Sbjct: 520 NAPVIEEILPKFLDFCED--YTIVAHNAGFDTGFIRENAKRINAEYNPSIIDTVAMARLL 577

Query: 104 GLPSA---LKAVGEALKLSSQ 121
                   L  V +AL +S +
Sbjct: 578 LPDLNRFKLDTVCKALNISLE 598


>gi|262212373|gb|ACY35803.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 38/141 (26%), Gaps = 10/141 (7%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R    A+ G+ +V ADL+GIE R+LA          A                +   A  
Sbjct: 13  RKLFTATPGQVMVGADLSGIELRMLAHYL-------ARYDEGRYASILLHGDIHQENADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   K +  A  Y  G         +    L+      K     + + DA      
Sbjct: 66  IGISRRQVKTVIYAFLYGAGDSKP---GRSYDPQLSEQQAKKKGKEIRQAYMDAVPGLEK 122

Query: 485 MQENHPEHAIEDLFIGTACER 505
           +       A           R
Sbjct: 123 LVTAVKSKAESGYINLCDSRR 143


>gi|315497200|ref|YP_004086004.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
           48]
 gi|315415212|gb|ADU11853.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
           48]
          Length = 232

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 24/143 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY--AEDVCVIL----FAFGFDDH-----PVELWDCVH 49
           M  + +D ET          + +    E   ++     F   F+              + 
Sbjct: 1   MRQIVLDTETTGIDPKKGHRLIEVGCIEIEDLLPTGKTFHHYFNPERLIEPDAIRVHGIT 60

Query: 50  DPVMPQV-----LKEALEN--TDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLV 98
           D ++        L +A  +   D  I+AHN+ F+R      L+          RW+ TL 
Sbjct: 61  DEMVADKPKFADLAQAFIDFVGDAPIIAHNASFDRGFINMELERLGLDPTDPDRWVDTLE 120

Query: 99  LARSNGLPS--ALKAVGEALKLS 119
           LAR        +L A+ +   +S
Sbjct: 121 LARYKFPGMANSLDALCKRYNIS 143


>gi|78046646|ref|YP_362821.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925275|ref|ZP_08186679.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
 gi|78035076|emb|CAJ22721.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544321|gb|EGD15700.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
          Length = 244

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 43/155 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYAE---DVC-----VILFA 34
           M  + +D ET          +                   +Y +   D       V    
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLD 87
             F               +       +      ++ HN+ F+   L          +   
Sbjct: 61  LEFLADK----PLF--GEVVDEFLAYI--DGAELIIHNAAFDLGFLDNELALLGDHYGRI 112

Query: 88  IPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS 120
           +     + TL++A  R  G  ++L A+ + L + +
Sbjct: 113 VERATVVDTLMMARERYPGQRNSLDALCKRLGVDN 147


>gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 958

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 23/147 (15%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH----------PVELWDCVH 49
           + ID ET         L +    ++ +   +  F+   D                   + 
Sbjct: 7   VAIDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRLIDPGCPVPQRIQHLTGIHPAMLA 66

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS-- 102
                + +   L +   D+ +VAHN+ F+   L+A F      +P   +  T  LAR   
Sbjct: 67  GKPRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSY-DTAELARVAL 125

Query: 103 -NGLPSALKAVGEALKLSSQKMEEGKE 128
                  L  + E L L  +     ++
Sbjct: 126 PLARNHRLATLAELLGLPLEHHHRAED 152


>gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae]
          Length = 1459

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 42/156 (26%), Gaps = 56/156 (35%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED---------------------VCVILF---- 33
            +  D ET         + + G     +D                       +       
Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGKVTQFFIKPQAKIGAFTTELTGITQQM 484

Query: 34  ----AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNL 86
                    D    ++DC+   V                +AHN+ F+   LK      N+
Sbjct: 485 LDSEGLSIKDGLQRIYDCLDGKVA---------------IAHNAKFDFNFLKEQFRLNNV 529

Query: 87  DIPIHRWICTLVLARSNGLP----SALKAVGEALKL 118
             P    I TL+ +R  G P      L+ V   L +
Sbjct: 530 PFPNVTVIDTLIASR-IGFPNYKRHKLEDVASRLGV 564


>gi|311258442|ref|XP_003127631.1| PREDICTED: exosome component 10-like [Sus scrofa]
          Length = 759

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 24/160 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       +    C++  +   +D    + D +       +L E+L +  +  V H +
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTED---FIIDTLELRSDMYILNESLTDPAIVKVFHGA 368

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIAR 132
             +   L+  F   + +     T   AR   L   +L                   L+  
Sbjct: 369 DSDIEWLQKDFG--LYVVNMFDTHQAARLLNLGRHSLDH-----------------LLKL 409

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           +C  E+++     +             Y + D      I+
Sbjct: 410 YCSVESNKQYQLADWRIRPLP-EEMLSYARDDTHYLLYIY 448


>gi|119355877|ref|YP_910521.1| DNA polymerase B region [Chlorobium phaeobacteroides DSM 266]
 gi|119353226|gb|ABL64097.1| DNA polymerase B region [Chlorobium phaeobacteroides DSM 266]
          Length = 796

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 62/230 (26%), Gaps = 66/230 (28%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEAL-- 61
           +D ET    D  + G      D  +I+ +   +    ++    +  +  + + L E +  
Sbjct: 160 LDIETCYDPDKKRTGSG--IGDDEIIIVSLSDNTGWEQVIHSKNRGEKKLLEHLVEIIIA 217

Query: 62  ENTDVTIVAHNS-YFERTVLKA---------------------------------CFNLD 87
            + DV    HN   F+   ++                                      +
Sbjct: 218 RDPDVIE-GHNIFSFDLPYIQKRCDRHNINFAIGRNGTTVRSYPSSIRFAERIIDYPYFE 276

Query: 88  IPIHRWICTLVL------ARSNGLPSALKAVGEALKL--SSQKMEEGKELIARFCKGETH 139
           IP    I TL L      ++       LKAV +        +   E K++I+ +      
Sbjct: 277 IPGRHVIDTLFLVQGYDVSKRAMQSYGLKAVAKYFGFASPDRTYVEYKDIISTWENNP-- 334

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
                               Y   DV  TR +   L   +     +    
Sbjct: 335 ---------------DKLLAYALDDVRETRALASHLSGSNYYLSRMMPYT 369


>gi|302037758|ref|YP_003798080.1| ribonuclease D [Candidatus Nitrospira defluvii]
 gi|300605822|emb|CBK42155.1| Ribonuclease D [Candidatus Nitrospira defluvii]
          Length = 401

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 44/192 (22%), Gaps = 31/192 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEA 60
            + ID E          G   +     + L     +     + D              E 
Sbjct: 29  VIAIDTE--------FMGEEHFI--PRLELIQVAAE-GVAAVIDFPAVQEAAPMARFWEI 77

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + +  +  V H    +  +             +  T + A   G  +             
Sbjct: 78  VCDARIEKVLHAGRQDLELFAHHAGRLPKP--FFDTQIAAAMVGYGA------------- 122

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L+ R    +  +     N      +      Y   DVT    + + L    S
Sbjct: 123 --QTAYANLVQRVQGVKLDKAHTFTNWSQRPLSREQLV-YALDDVTFLLPVHRHLRQKLS 179

Query: 181 KEQELWYLDQTI 192
                 ++D+  
Sbjct: 180 VMGRSEWVDEEF 191


>gi|229472425|gb|ACQ72727.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 12/142 (8%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++     +      
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYANILLNDDIHQVNADKI----- 66

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQK-MASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                  R   K +  A  Y            S    +           +  +     E 
Sbjct: 67  ----GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQ 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               +++   E        G  
Sbjct: 123 LVEAVKKKAKETGSIRSIDGRK 144


>gi|190407627|gb|EDV10894.1| mitochondrial DNA polymerase catalytic subunit [Saccharomyces
           cerevisiae RM11-1a]
          Length = 1254

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 87/332 (26%), Gaps = 73/332 (21%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P+         + + +   + ++       I   +++ V A  G   V AD+   E   
Sbjct: 644 IPKIVPMGTITRRAVENTWLTASNAKANR--IGSELKTQVKAPPGYCFVGADVDSEEL-W 700

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA----QVTKDQRAIGKVMELALGYQGG 444
           +A + G+        T          ++          Q+    R   K+      Y  G
Sbjct: 701 IASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTAQILGCSRNEAKIFNYGRIYGAG 760

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           AK   ++      +L                          ++   +            +
Sbjct: 761 AKFASQLLKRFNPSLTD---------------------EETKKIANKLYENTKGKTKRSK 799

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                         + W                           +   K ++      P 
Sbjct: 800 LF-----------KKFWY---------------------GGSESILFNKLESIAEQETP- 826

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNAT 618
                   +G   +Y  +  ++  R  ++        +Q+   D   +L   M   +   
Sbjct: 827 ----KTPVLGCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCSMEYIIKKY 880

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                + +++HDEI     + D++ A+M   +
Sbjct: 881 NLEARLCISIHDEIRFLVSEKDKYRAAMALQI 912


>gi|327194287|gb|EGE61150.1| ribonuclease III protein [Rhizobium etli CNPAF512]
          Length = 381

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 54/192 (28%), Gaps = 29/192 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           + +      + L         V +       +      E +
Sbjct: 19  DFITIDTE----------FLRETTFWPELCLIQMASPTLEVLVDPLAKG-IDLAPFFELM 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +T V  V H +  +  ++    N  +  H    T V A   G      +V     +S  
Sbjct: 68  ADTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFG---DSVSYDQLVSRI 122

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K            K         R             EY   DVT  R+++  L+    +
Sbjct: 123 KNVHI-------DKSSRFTDWSRRPLS------DKQLEYALADVTHLRDVYLSLKAELDR 169

Query: 182 EQELWYLDQTIN 193
           E    +L + +N
Sbjct: 170 EGRTSWLTEEMN 181


>gi|229472255|gb|ACQ72642.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 50.9 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 58/274 (21%), Gaps = 97/274 (35%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS    +V ADLAGIE R+LA          A                +   
Sbjct: 10  AEFRKLFRASPTLVMVGADLAGIELRMLAHYL-------ARYDEGRYADVLLNGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G         +    L+                     
Sbjct: 63  ADKIGISRKQVKTVTYAFLYGAGDAKL---GRSYDPQLSEKDAK---------------- 103

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                                 + +++A+      + +L   +    E            
Sbjct: 104 -------------------KKGKEIRQAYMDAVPGLEKLVTAVKSKAES----------- 133

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             + L  GR                             K    +
Sbjct: 134 ----------------GYINLCDGRRCSVDGSH---------------------KALNYL 156

Query: 602 VQAVSRDILAEGMM----NATKAGYDIVLTVHDE 631
           +Q  +  +    ++    N  +     +  +HDE
Sbjct: 157 LQGSAGILAKRWLLINHENPHELCCSQLAFIHDE 190


>gi|229472387|gb|ACQ72708.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 12/142 (8%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++     +      
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI----- 66

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQK-MASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                  R   K +  A  Y            S    +           +  +     E 
Sbjct: 67  ----GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQ 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               +++   E        G  
Sbjct: 123 LVEAVKKKAKETGSIRSIDGRK 144


>gi|209881893|ref|XP_002142384.1| exosome component 10 [Cryptosporidium muris RN66]
 gi|209557990|gb|EEA08035.1| exosome component 10, putative [Cryptosporidium muris RN66]
          Length = 1029

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 46/177 (25%), Gaps = 29/177 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E           +  +     V L           + D          L E   
Sbjct: 400 VLAIDLE--------HHSMQTFR--GFVCLIQMSTRTCD-YIIDPFPLFEELSRLNELTT 448

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  +  + H S ++   L+   +  + +     T   AR    P    ++G  L L    
Sbjct: 449 NPRILKLFHGSDYDIIWLQR--DFSVYVVNMFDTGQAARVLNTPGG-YSLGNLLNL---- 501

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                       K        +R  P H        EY + D      I+  ++   
Sbjct: 502 -----YCSVEANKQYQLSDWRERPLPQH------LIEYARSDTHYLPYIYDIMKNQL 547


>gi|307317748|ref|ZP_07597186.1| ribonuclease D [Sinorhizobium meliloti AK83]
 gi|306896510|gb|EFN27258.1| ribonuclease D [Sinorhizobium meliloti AK83]
          Length = 383

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 39/191 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + ID E     T  P+               + L           + D +   +     
Sbjct: 20  YITIDTEFLRETTFWPV---------------LCLIQMA-SPEMAVIVDPMAPGIDLAPF 63

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              + N DV  V H +  +  ++      ++  H    T V A   G      +V     
Sbjct: 64  FALMSNPDVVKVFHAARQDIEII-HHLG-NLIPHPIFDTQVAAMVCGFG---DSVSYDQL 118

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           ++  K E+         K         R   + +        Y   DVT  R+I++ L  
Sbjct: 119 VNRIKNEQI-------DKSSRFTDWSRRPLTDKQLD------YALADVTHLRDIYQYLTK 165

Query: 178 LSSKEQELWYL 188
              +E    +L
Sbjct: 166 ELDREGRSSWL 176


>gi|262342111|gb|ACY54566.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 38/143 (26%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R   I S G+ +V ADL+GIE R+LA      +  +        D++     +    
Sbjct: 10  GRFRELFIPSPGQLMVGADLSGIELRMLAHYLARYDGGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R   K +  A  Y  G         ++           +  SA     D  
Sbjct: 67  ------GISRREVKTVTYAFLYGAGDAKIGTSFDSSLSETKAKKKGKEIRSAFISAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +               
Sbjct: 121 DELLSAIKEASTRGFVRSIDQRK 143


>gi|262212383|gb|ACY35808.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 66/275 (24%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K+   ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KVLNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|470326|gb|AAA17543.1| mitochondrial DNA polymerase [Saccharomyces cerevisiae]
          Length = 1254

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 87/332 (26%), Gaps = 73/332 (21%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P+         + + +   + ++       I   +++ V A  G   V AD+   E   
Sbjct: 644 IPKIVPMGTITRRAVENTWLTASNAKANR--IGSELKTQVKAPPGYCFVGADVDSEEL-W 700

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA----QVTKDQRAIGKVMELALGYQGG 444
           +A + G+        T          ++          Q+    R   K+      Y  G
Sbjct: 701 IASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTAQILGCSRNEAKIFNYGRIYGAG 760

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           AK   ++      +L                          ++   +            +
Sbjct: 761 AKFASQLLKRFNPSLTD---------------------EETKKIANKLYENTKGKTKRSK 799

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                         + W                           +   K ++      P 
Sbjct: 800 LF-----------KKFWY---------------------GGSESILFNKLESIAEQETP- 826

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNAT 618
                   +G   +Y  +  ++  R  ++        +Q+   D   +L   M   +   
Sbjct: 827 ----KTPVLGCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCSMEYIIKKY 880

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                + +++HDEI     + D++ A+M   +
Sbjct: 881 NLEARLCISIHDEIRFLVSEKDKYRAAMALQI 912


>gi|317154839|ref|YP_004122887.1| hypothetical protein Daes_3149 [Desulfovibrio aespoeensis Aspo-2]
 gi|316945090|gb|ADU64141.1| Protein of unknown function DUF1998 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 987

 Score = 50.5 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 53/179 (29%), Gaps = 33/179 (18%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFG--FDDHPVELWDCVHDPVMPQVLKEALEN 63
           ID ETR   D  + G    A+    +  +    +D     ++D   D      L   L+ 
Sbjct: 817 IDIETRFSAD--EVGGWGRADR---MGVSVACVWDAGECAMFDFGQDD--LDALVARLQ- 868

Query: 64  TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE---ALKLS 119
               ++  N   F+  VL       +   ++           LP  L  + E    L   
Sbjct: 869 QFDLVIGFNHVKFDYAVL-----GGLHPFKFR---------SLP-NLDLLAEINTRLGYR 913

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                  +  +    K                    L  EYC+ DV VTR+++      
Sbjct: 914 VSLDNTAQATLN-VGKSADGLMALKW---WKEGRLDLITEYCRKDVAVTRDLYLHGREH 968


>gi|307825065|ref|ZP_07655286.1| ribonuclease D [Methylobacter tundripaludum SV96]
 gi|307733813|gb|EFO04669.1| ribonuclease D [Methylobacter tundripaludum SV96]
          Length = 389

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 63/273 (23%), Gaps = 53/273 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E      L +             L      +    +           +L EA+ +
Sbjct: 27  LALDTE-----FLREKTYY-----PKFCLLQIATPEWVACIDPIALPS--LDILFEAIYS 74

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALKLS 119
             +  V H+   +  +                T + A           A+  V   L ++
Sbjct: 75  PSIVKVFHSCRQDLEIFYQLTGKL--PEPLFDTQIAAPLLGFQENPGYAM-LVSSLLNVN 131

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                          +Y   DV    +I++ +    
Sbjct: 132 LNKAHTRADWSKRPL-------------------IDAEIQYAADDVIYLCKIYQMMLQKL 172

Query: 180 SKEQELWYLDQTI----NDRGYCVDVALAHTLNQIVDV------ERTKLDQELESLTYGL 229
           ++     +L++      N   Y V    A    +  +          +   E        
Sbjct: 173 AELGRAEWLERDFAELANPDLYEVKPEKAWLKIKGKNKLTGRQLSIVQALAEWREKAAQT 232

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
               +        LF      L  L   T   +
Sbjct: 233 EDRPKSWLLRDEMLFD-----LAKLQPETVSEL 260


>gi|151945409|gb|EDN63652.1| mitochondrial DNA polymerase catalytic subunit [Saccharomyces
           cerevisiae YJM789]
 gi|207340866|gb|EDZ69085.1| YOR330Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1280

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 87/332 (26%), Gaps = 73/332 (21%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P+         + + +   + ++       I   +++ V A  G   V AD+   E   
Sbjct: 670 IPKIVPMGTITRRAVENTWLTASNAKANR--IGSELKTQVKAPPGYCFVGADVDSEEL-W 726

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA----QVTKDQRAIGKVMELALGYQGG 444
           +A + G+        T          ++          Q+    R   K+      Y  G
Sbjct: 727 IASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTAQILGCSRNEAKIFNYGRIYGAG 786

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           AK   ++      +L                          ++   +            +
Sbjct: 787 AKFASQLLKRFNPSLTD---------------------EETKKIANKLYENTKGKTKRSK 825

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                         + W                           +   K ++      P 
Sbjct: 826 LF-----------KKFWY---------------------GGSESILFNKLESIAEQETP- 852

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNAT 618
                   +G   +Y  +  ++  R  ++        +Q+   D   +L   M   +   
Sbjct: 853 ----KTPVLGCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCSMEYIIKKY 906

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                + +++HDEI     + D++ A+M   +
Sbjct: 907 NLEARLCISIHDEIRFLVSEKDKYRAAMALQI 938


>gi|145640347|ref|ZP_01795931.1| ribonuclease D [Haemophilus influenzae R3021]
 gi|145274933|gb|EDK14795.1| ribonuclease D [Haemophilus influenzae 22.4-21]
          Length = 380

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 47/161 (29%), Gaps = 27/161 (16%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           +D   V L D        P      L N  V  + H+   +  V    F  D      I 
Sbjct: 55  YDGERVSLIDPLAITDFSP--FIALLANPKVLKILHSCSEDLLVFLQEF--DQLPRPMID 110

Query: 96  TLVLARSNGLPSA--LKAVG-EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           T ++AR  GL ++  L  +  + L +   K       I R                    
Sbjct: 111 TQIMARFIGLGASAGLAKLAQQYLNVEIDKGATRTNWIKRPLS----------------- 153

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
              +  +Y  GDV     ++  LE   +K      +     
Sbjct: 154 --DIQLQYAAGDVWYLLPLYHILEKELAKTPWEKAVSDDCE 192


>gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
 gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
          Length = 295

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 51/193 (26%), Gaps = 33/193 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D E+ S           Y +   V L           + D +    +  VL    
Sbjct: 24  RHLAVDTESNS--------FYAYFD--RVCLIQIS-SPERDYIIDPLSLKDL-SVLGRLF 71

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           EN  +  V H +  +   L+   +     +    T +  +  G         + L LS  
Sbjct: 72  ENPRIEKVLHAASNDVLGLRR--DFQFRFNGLFDTAIACKLLGY--------KQLGLSKI 121

Query: 122 -KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            +   G  L  R+ + +       R     +        Y + D      +   L     
Sbjct: 122 LETHFGVSLNKRWQRYDW----GKRPLVPDQLD------YARLDTHYLIALRHMLAADLQ 171

Query: 181 KEQELWYLDQTIN 193
             +      +   
Sbjct: 172 SRELWAEACEAFE 184


>gi|311745409|ref|ZP_07719194.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
 gi|126577956|gb|EAZ82176.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
          Length = 223

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 45/155 (29%), Gaps = 44/155 (28%)

Query: 4   LFIDFETRSPIDLT------------------KCGICKYAE----DVCVILFAFGFDDHP 41
           + +D ET                           G+  Y +    D   I       +  
Sbjct: 40  VVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWYLKSSKKDFKTIPVHGLIGNEE 99

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTL- 97
                        + + E  EN    +V H+  F+  +L+     F LD   ++ I T+ 
Sbjct: 100 A--VPL---EQFAKRVLEYFENN--ILVGHHLGFDLEMLEKALKPFGLDKIQNKCIDTMS 152

Query: 98  --------VLA---RSNGLPSALKAVGEALKLSSQ 121
                   ++A     +    +L ++ +   + + 
Sbjct: 153 LAIRLDHGLMADRNYIDFKDYSLDSLCQRYDIKTD 187


>gi|256272554|gb|EEU07533.1| Mip1p [Saccharomyces cerevisiae JAY291]
          Length = 1254

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 87/332 (26%), Gaps = 73/332 (21%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P+         + + +   + ++       I   +++ V A  G   V AD+   E   
Sbjct: 644 IPKIVPMGTITRRAVENTWLTASNAKANR--IGSELKTQVKAPPGYCFVGADVDSEEL-W 700

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA----QVTKDQRAIGKVMELALGYQGG 444
           +A + G+        T          ++          Q+    R   K+      Y  G
Sbjct: 701 IASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTAQILGCSRNEAKIFNYGRIYGAG 760

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           AK   ++      +L                          ++   +            +
Sbjct: 761 AKFASQLLKRFNPSLTD---------------------EETKKIANKLYENTKGKTKRSK 799

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                         + W                           +   K ++      P 
Sbjct: 800 LF-----------KKFWY---------------------GGSESILFNKLESIAEQETP- 826

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNAT 618
                   +G   +Y  +  ++  R  ++        +Q+   D   +L   M   +   
Sbjct: 827 ----KTPVLGCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCSMEYIIKKY 880

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                + +++HDEI     + D++ A+M   +
Sbjct: 881 NLEARLCISIHDEIRFLVSEKDKYRAAMALQI 912


>gi|241763763|ref|ZP_04761810.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
 gi|241366982|gb|EER61378.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
          Length = 237

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 32/159 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK--- 58
             + +D ET     L+  G  +  E  CV L +     +    +           LK   
Sbjct: 3   RQIVLDTETTG---LSAEGGDRIIEIGCVELVSRKLTGNNKHFYLNPERDSHEDALKVHG 59

Query: 59  ---EALENT---------------DVTIVAHNSYFERTVLKACF------NLDIPIHRWI 94
              E L +                   ++ HN+ F+   L           L   +    
Sbjct: 60  ISNEFLRDKPKFAAVADELLEYLQGAEVIIHNAAFDVGFLNKELELLGRPALHTFVDSVT 119

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL +A+        +L A+ + L + +        L+ 
Sbjct: 120 DTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLD 158


>gi|190891177|ref|YP_001977719.1| ribonuclease III protein [Rhizobium etli CIAT 652]
 gi|190696456|gb|ACE90541.1| ribonuclease III protein [Rhizobium etli CIAT 652]
          Length = 381

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 54/192 (28%), Gaps = 29/192 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           + +      + L         V +       +      E +
Sbjct: 19  DFITIDTE----------FLRETTFWPELCLIQMASPTLEVLVDPLAKG-IDLAPFFELM 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +T V  V H +  +  ++    N  +  H    T V A   G      +V     +S  
Sbjct: 68  ADTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFG---DSVSYDQLVSRI 122

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K            K         R             EY   DVT  R+++  L+    +
Sbjct: 123 KNVHI-------DKSSRFTDWSRRPLS------DKQLEYALADVTHLRDVYLSLKAELDR 169

Query: 182 EQELWYLDQTIN 193
           E    +L + +N
Sbjct: 170 EGRTSWLTEEMN 181


>gi|157876102|ref|XP_001686412.1| exosome subunit rrp6p homologue [Leishmania major strain Friedlin]
 gi|68129486|emb|CAJ08029.1| putative exosome subunit rrp6p homologue [Leishmania major strain
           Friedlin]
          Length = 742

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 49/178 (27%), Gaps = 31/178 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y+      L      +    + DC+        L    
Sbjct: 252 REIAVDLE----------HHDFYSYQGFTCLMQISTREED-FIVDCLKLRSSMGALAPVF 300

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +  V H +  +   L+   +  + +     T V  ++  +P +L            
Sbjct: 301 LNPSILKVLHGAREDIRWLQK--DFSLYVVNLFDTGVALQTLHMPYSLAFA--------- 349

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                   +  FC+ + ++     +      +      Y + D      +  RL+ L 
Sbjct: 350 --------VDHFCQVKLNKKYQTADWRVRPLS-AEMVHYARQDTHFLLYVHDRLKALL 398


>gi|83578108|ref|NP_014975.2| Mip1p [Saccharomyces cerevisiae S288c]
 gi|1706509|sp|P15801|DPOG_YEAST RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|1163066|emb|CAA89977.1| MIP1 [Saccharomyces cerevisiae]
 gi|285815200|tpg|DAA11093.1| TPA: Mip1p [Saccharomyces cerevisiae S288c]
          Length = 1254

 Score = 50.5 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 87/332 (26%), Gaps = 73/332 (21%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P+         + + +   + ++       I   +++ V A  G   V AD+   E   
Sbjct: 644 IPKIVPMGTITRRAVENAWLTASNAKANR--IGSELKTQVKAPPGYCFVGADVDSEEL-W 700

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA----QVTKDQRAIGKVMELALGYQGG 444
           +A + G+        T          ++          Q+    R   K+      Y  G
Sbjct: 701 IASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTAQILGCSRNEAKIFNYGRIYGAG 760

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           AK   ++      +L                          ++   +            +
Sbjct: 761 AKFASQLLKRFNPSLTD---------------------EETKKIANKLYENTKGKTKRSK 799

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                         + W                           +   K ++      P 
Sbjct: 800 LF-----------KKFWY---------------------GGSESILFNKLESIAEQETP- 826

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNAT 618
                   +G   +Y  +  ++  R  ++        +Q+   D   +L   M   +   
Sbjct: 827 ----KTPVLGCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCSMEYIIKKY 880

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                + +++HDEI     + D++ A+M   +
Sbjct: 881 NLEARLCISIHDEIRFLVSEKDKYRAAMALQI 912


>gi|320541061|ref|ZP_08040484.1| hypothetical protein SSYM_0208 [Serratia symbiotica str. Tucson]
 gi|320028876|gb|EFW11132.1| hypothetical protein SSYM_0208 [Serratia symbiotica str. Tucson]
          Length = 54

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 2  ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
            L++D ET S I +       YAE+V VILF++  D  PV++ +  H   
Sbjct: 3  KILWLDLETYSEIPIKNA-THTYAENVDVILFSWAIDKDPVQVCERYHKRK 52


>gi|294853583|ref|ZP_06794255.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819238|gb|EFG36238.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 191

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 39  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 97

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 98  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 154

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L    + L L
Sbjct: 155 DGARRLWRGDSTKLDHCSQRLAL 177


>gi|262212391|gb|ACY35812.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 66/275 (24%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+++  I    M+   ++        + +  VHDE
Sbjct: 159 QSLAGVIAKRWMLLTDESLRQGSIEANQLAFVHDE 193


>gi|225442373|ref|XP_002281479.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 336

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 23/189 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G         ++  AF      + L D       + +  K AL
Sbjct: 56  VIGFDCE---GVDLCRHGSLC------IMQLAF---PDAIYLVDAIQGGEKLMKACKPAL 103

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALK 117
           E++ +T V H+   +   L   F   I +H  + + +         G   +       + 
Sbjct: 104 ESSYITKVIHDCKRDSEAL--YFQFGIKLHNVVDSQIAYSLIEEQQGRRRSPDDYISFVG 161

Query: 118 LSSQKMEEGKELIARFCKGE-THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           L +     G   I+   K E       D     +R    L       DV     I+ ++ 
Sbjct: 162 LLADPRYCG---ISYLEKKEVRVLLKQDPKFWTYRPLSELMVRAAADDVRFLPYIYYKMM 218

Query: 177 PLSSKEQEL 185
              ++    
Sbjct: 219 EELNEHSLW 227


>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1438

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 96/360 (26%), Gaps = 63/360 (17%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDHP--VELW----------- 45
            +  D ET         + +    K  E   +  +A   + H                  
Sbjct: 421 YVVFDIETTGLSITANKIIELAAVKMHEGKEIGRYATFVNPHERIPYHIQQLTNINDDMV 480

Query: 46  -DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
            D      + +   E + +    +VAHN+ F+   ++       +D   + ++ TL LAR
Sbjct: 481 KDAPELEPVLKEFVEFVGDG--VLVAHNARFDMGFIQAALKNAGMDTLENPYLDTLELAR 538

Query: 102 SNGLP---SALKAVGEALKLSSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                     L  + +  K+  +       + IA            D+ K          
Sbjct: 539 LVHPGLKNHRLNTLADKYKVLLESHHRAIDDTIALAGILNGLLSDVDKTKGVK--MLDRL 596

Query: 158 GEYCKGDVTVT-------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN-- 208
            +Y   D++ T         +    +    K   + +       R  C+  +    +   
Sbjct: 597 NDYVGMDLSNTRPFHCGIYALNMTGKKNLYKLVSMSH--TEYFKRVPCIPKSKLQEMRDG 654

Query: 209 ----------QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
                     +  +    K ++E E +             +   L  +  +   +  +T 
Sbjct: 655 LLVLSGCEKGEFFETVLNKTEEEAEEIAGFYDVLEIQPLTMYMHLVDKGLVGSPEEIKTA 714

Query: 259 CQRVL---SSNKKLTPQAI----QVFNNRMRASRSAV----LKLNTLVEAMNSDGRLRGT 307
             +V+       K  P            R +  R          + L +    D   R T
Sbjct: 715 ISKVVRIGEKLNK--PVIATGNVHYLEPRDKLFRDITIHGITGFSPLKDMRKPDAHFRTT 772


>gi|328543996|ref|YP_004304105.1| ribonuclease d protein [polymorphum gilvum SL003B-26A1]
 gi|326413740|gb|ADZ70803.1| Probable ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
          Length = 394

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 57/192 (29%), Gaps = 29/192 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E           + +      + +           + D + D +      + +
Sbjct: 21  DYVTVDTE----------FLRETTFWPKLCVIQMA-GPDDAVIVDALADGLDLAPFLDLM 69

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  VT V H +  +  ++       +  H    T V A   G   +             
Sbjct: 70  RNERVTKVFHAARQDIEIV-YHLG-GLIPHPLFDTQVAAMVCGFGDS------------- 114

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                 +L+ R       +     +        +   +Y   DVT  R++++ L+   ++
Sbjct: 115 --ISYDQLVQRITGARIDKSSRFTDWARRPL-TQKQLDYALADVTYLRDVYRFLKANLAE 171

Query: 182 EQELWYLDQTIN 193
           +    +++  + 
Sbjct: 172 QDRSHWVEDEME 183


>gi|307107266|gb|EFN55509.1| hypothetical protein CHLNCDRAFT_133914 [Chlorella variabilis]
          Length = 1092

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 46/179 (25%), Gaps = 33/179 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D E  S          +  +     L         + +        +   L     
Sbjct: 269 ELAVDLEAHS---------YRSFQGF-CCLMQLSTRSEDLVIDTLALRAHVGPALAPIFA 318

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLSS 120
           +  V  V H +  +   L+  F L +       T   AR  G+    L  + +      +
Sbjct: 319 DPGVVKVLHGADSDVAWLQRDFGLFL--ANLFDTGQAARVLGMRGHGLAHLLDFYCGFKA 376

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K  +  +                R +P   E       Y + D       + +L+   
Sbjct: 377 DKRFQLADW---------------RVRPLTPE----MLHYARSDTHHLLYCYDKLKAAL 416


>gi|229472383|gb|ACQ72706.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 39/142 (27%), Gaps = 8/142 (5%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    A+ G  +V ADLAGIE R+LA          A   G            +   
Sbjct: 10  AEFRKLFTATPGMVMVGADLAGIELRMLAHYL-------ARFDGGRYGDVLINGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           A      R + K +  A  Y  G +                        +  +     + 
Sbjct: 63  ADKVGISRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQK 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               ++    +++  +   G  
Sbjct: 123 LVEAVKCKARQYSYINAIDGRR 144


>gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 595

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 29/144 (20%)

Query: 4   LFIDFETR----SPIDLTKCGICKYAEDVCVIL-FAFGFDDHPVE--------------L 44
           + +D ET     S   +T+ G  +      V+  FA   +                   +
Sbjct: 27  VVLDLETTGTSASGSRITEVGAVR-VRGGEVVGEFATLVNPGTPIPANITLLTGITQSMV 85

Query: 45  WDCVHDPVMPQVLKEAL-ENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA 100
                   +   L   L    D  +VAHN+ F+   LKA       D P +  + TL LA
Sbjct: 86  ASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPGYPVVDTLRLA 145

Query: 101 RSNGL-----PSALKAVGEALKLS 119
           R+           L  +     + 
Sbjct: 146 RAVLARGETRNHRLATLAAYFGVP 169


>gi|209364170|ref|YP_001425094.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
           5J108-111]
 gi|212213173|ref|YP_002304109.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
 gi|212218153|ref|YP_002304940.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
 gi|215918940|ref|NP_819360.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
 gi|206583825|gb|AAO89874.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
 gi|207082103|gb|ABS77173.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
           5J108-111]
 gi|212011583|gb|ACJ18964.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
 gi|212012415|gb|ACJ19795.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
          Length = 236

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 49/195 (25%), Gaps = 44/195 (22%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-------EDV-CVILFA 34
           M  + +D ET   +                   LT   +  Y         D   +    
Sbjct: 5   MRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPERSIERDAIEIHGIT 64

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD------- 87
                    L D      +   L   L      ++ HN+ F+   L     L        
Sbjct: 65  ------DSFLIDKPLFKDIATELISFL--KGAELIIHNAPFDVGFLNHELKLTGQSFKTL 116

Query: 88  IPIHRWICTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYD 144
               + + TL +AR       + L A+     + +  +   G  L A             
Sbjct: 117 THYCQVLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGG 176

Query: 145 RNKPNHREAWRLFGE 159
           +     ++ + +   
Sbjct: 177 QTVLFEQQGFAVASR 191


>gi|153208787|ref|ZP_01947019.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161831371|ref|YP_001596268.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
 gi|165920933|ref|ZP_02219603.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334]
 gi|120575749|gb|EAX32373.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161763238|gb|ABX78880.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
 gi|165916781|gb|EDR35385.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 334]
          Length = 232

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 49/195 (25%), Gaps = 44/195 (22%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-------EDV-CVILFA 34
           M  + +D ET   +                   LT   +  Y         D   +    
Sbjct: 1   MRQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPERSIERDAIEIHGIT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD------- 87
                    L D      +   L   L      ++ HN+ F+   L     L        
Sbjct: 61  ------DSFLIDKPLFKDIATELISFL--KGAELIIHNAPFDVGFLNHELKLTGQSFKTL 112

Query: 88  IPIHRWICTLVLARSNGL--PSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYD 144
               + + TL +AR       + L A+     + +  +   G  L A             
Sbjct: 113 THYCQVLDTLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGG 172

Query: 145 RNKPNHREAWRLFGE 159
           +     ++ + +   
Sbjct: 173 QTVLFEQQGFAVASR 187


>gi|71412302|ref|XP_808342.1| mitochondrial DNA polymerase I protein D [Trypanosoma cruzi strain
           CL Brener]
 gi|70872528|gb|EAN86491.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma
           cruzi]
          Length = 230

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 52/194 (26%), Gaps = 18/194 (9%)

Query: 473 EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
            +     +F R         +            + +  R+ +  V       +     + 
Sbjct: 8   RQQAKIFSFQRQYGAGVKMISQSTGLTQDQVRNLIEKERETYHGVDAF----NSMVALSA 63

Query: 533 ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
            N  A I    R+V      K    +I     G   V+ +       +   +        
Sbjct: 64  NNFDASIQDGSRNVRGHQFFKGMFPVIT----GSRYVFTESDVPEGIMREKSLSAKSTNF 119

Query: 593 YGGKLTENIVQAVSRDI--LAEGMM-------NATKAGYDIVLTVHDEIVCETPDTDEFN 643
               L    VQ  + +I  +  GM+       N       +  TVHD +  +        
Sbjct: 120 SPTHLKNYPVQGFAGEIVQIMLGMLWRHFLRNNNYNGLAVLTNTVHDCVWIDCHADIFLQ 179

Query: 644 AS-MLYHLMTSNPS 656
            +  +  +M++   
Sbjct: 180 VAYEVETIMSNVRE 193


>gi|262212377|gb|ACY35805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 65/275 (23%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRELFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|157138880|ref|XP_001647551.1| DNA polymerase gamma [Aedes aegypti]
 gi|108865347|gb|EAT32219.1| DNA polymerase gamma [Aedes aegypti]
          Length = 657

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 76/288 (26%), Gaps = 41/288 (14%)

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLY 409
              + I   +R+ V A +G K+V AD+   E  + +       AG               
Sbjct: 272 AQRERIGSELRAMVQAPKGYKMVGADVDSQELWIASVLGDGHAAGIHGATPLGWMTLSGS 331

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
                   +V  AQ     R   KV+  A  Y  G    +++        +      K  
Sbjct: 332 KAAKTDMHSV-TAQAVGISRDHAKVINYARIYGAGQNFAERLLKQFNPTFSEAEARSKAM 390

Query: 470 SAPEEWEDAENFCRW--MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQA 527
                 +  + +      ++  P                     +           + + 
Sbjct: 391 KMFALTKGKKFYYLKPDYRDEFPHKGYSG--------------YEALKMAKVCNKAVDEM 436

Query: 528 FEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQL 587
           FE+    G    A   R +  +   +      L     R+L  ++    R          
Sbjct: 437 FEKARWEGGTESAMFNR-LEEIAGSEAPVTPFLGGRLSRALEPQEGTEERFL-------- 487

Query: 588 TREYTYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEI 632
                        +VQ+ + D   ++   M           L+ HDE+
Sbjct: 488 -------PTRINWVVQSGAVDFLHLMLVSMRWLMGNRVRFCLSFHDEV 528


>gi|89069870|ref|ZP_01157204.1| ribonuclease D [Oceanicola granulosus HTCC2516]
 gi|89044546|gb|EAR50665.1| ribonuclease D [Oceanicola granulosus HTCC2516]
          Length = 385

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 70/270 (25%), Gaps = 40/270 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKE 59
            + +D E      L +     +     + L    +         L D +   +    L  
Sbjct: 22  YVTVDTE-----FLRERTYYPH-----LCLVQLAYPGDGKTDAVLVDPLEGGLDLAPLYA 71

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
             ++  V  V H +  +  +        +       T V A   G        GE +   
Sbjct: 72  LFQDHGVVKVFHAARQDLEIF--WHGGQVIPEPLFDTQVAAMVCGF-------GEQVGY- 121

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  + L+ +  +    +     +      +      Y   DVT  R I++ L+   
Sbjct: 122 -------ETLVRKIARENLDKSSRFTDWSRRPLS-EAQKRYALADVTHLRVIYEELKAEL 173

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL------ESLTYGLVSSS 233
            K   + +L     +     D A                            L     S +
Sbjct: 174 DKSGRIKWL---AEEMAILKDPATYVVQPDEAWQRVKTRTNSARFLGIVRELARFRESYA 230

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
           +     ++ +F +  L     T+    + L
Sbjct: 231 QERNVPRSRVFKDDALVEIASTKPASAQDL 260


>gi|188579669|ref|YP_001923114.1| exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
 gi|179343167|gb|ACB78579.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
           BJ001]
          Length = 297

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 25/151 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LF---AFGFDDH--------PVE 43
           M+ + IDFET +    + C +   + E   V+     L       F           P +
Sbjct: 1   MSVVAIDFETANERRDSACAVGLAWIEGGRVVRRETRLIRPPQMRFSPGNIRIHGILPAD 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D    P +    +  L      ++AHN+ F+  VL    A +   +P     CTL +A
Sbjct: 61  VRDAPTFPEVFAEFRPDLT--GALLLAHNAGFDMGVLAASLAAWGEPVPDMAGHCTLQIA 118

Query: 101 RSNGL---PSALKAVGEALKLSSQKMEEGKE 128
           R          L  V   L +  +  + G++
Sbjct: 119 RRIFPDPAGHGLAKVAGRLGIRFEHHDAGED 149


>gi|163735131|ref|ZP_02142567.1| ribonuclease D [Roseobacter litoralis Och 149]
 gi|161391589|gb|EDQ15922.1| ribonuclease D [Roseobacter litoralis Och 149]
          Length = 387

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 53/195 (27%), Gaps = 41/195 (21%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVM 53
             + +D E     T                   + L        DD    + D +   + 
Sbjct: 21  DYVTVDTEFLRERTYYS---------------KLCLIQLAMPGEDDSTGCIVDPLVPGLS 65

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + L     +T V  V H +  +  +     + ++       T V A   G        G
Sbjct: 66  LEPLYALFRDTSVVKVFHAARQDLEIF--YVDAEVFPEPLFDTQVAAMVCGF-------G 116

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +          + L+ R  K    +     +             Y   DVT  R++++
Sbjct: 117 EQVGY--------ETLVRRIAKQPLDKTSRFTDWSRRPLTDAQMK-YALADVTHLRDVYE 167

Query: 174 RLEPLSSKEQELWYL 188
            L     +     ++
Sbjct: 168 FLAEKLEETGRSRWV 182


>gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
 gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Fulvimarina pelagi HTCC2506]
          Length = 466

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 25/151 (16%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVELWD------------ 46
               D ET   I     + + G  +  +   V    F     P                 
Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASSKIHGITDK 333

Query: 47  -CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLAR 101
             +  P + +  +   E + +  +VAHN+ F+ + L+       +    H  + T++++ 
Sbjct: 334 MVMGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAFD-HPIVDTVLVSA 392

Query: 102 SNGLP---SALKAVGEALKLSSQKMEEGKEL 129
                     L  V E L +  +K +    L
Sbjct: 393 IIFGTTERHMLDVVCERLGIRIEKKDRHTAL 423


>gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 288

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 24/115 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVC----VILFAFGFDDHPVELWD------------C 47
           + ID ET     +    I   A        +  F    +                     
Sbjct: 116 VAIDLETTGLNPINDKIIEVAAVKFKDGQIIDRFTTLINPE--IHIPSGITRINHITDEM 173

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTL 97
           V D  +   +   L N   D  +V HN+ F+   LK     F  DI  + +I TL
Sbjct: 174 VKDAPVLAEVMPCLVNFIEDSILVMHNASFDLKFLKHHAMNFGHDIN-NSYIDTL 227


>gi|326918448|ref|XP_003205500.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
           helicase-like [Meleagris gallopavo]
          Length = 1569

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 69/233 (29%), Gaps = 33/233 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+         +   + +           L+        P+ LK  LE+  +        
Sbjct: 163 DIEWPPSYAKGKMAKIAVIQICVTKEKCYLFHISSMSGFPKGLKRLLEDETIKK------ 216

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
                      + I    W    +++        LK+  E   ++++K++  +       
Sbjct: 217 ---------AGVGIEGDHW---KLMS---DFEVKLKSFVELADVANEKLKCKEVWSLNGL 261

Query: 135 KGETHECLYDRNKPNHREAWRLF------GEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
                     ++K      W  F        Y   D      I+++L+ ++S +++L+  
Sbjct: 262 VKHLFGKQLLKDKSIRCGNWEKFPLDEEQKLYAATDAYAGLIIYQKLKNMNSADRKLY-- 319

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
                 R   +   +   +   +  E   L  ++   +  L +  R  E L  
Sbjct: 320 ---GERRDDALSDDVKERM-TSLAEEMVYLASKISDSSGQLRNLQRSAEILAD 368


>gi|291450661|ref|ZP_06590051.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
 gi|291353610|gb|EFE80512.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 345

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 24/135 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHD------- 50
           +D ET        +   G+ +      V      L     D  PV +             
Sbjct: 43  VDVETTGLARDDRIVSAGVYQLDALGRVEDHWYTLVNPERDPGPVWIHGLTTGVLKDAPL 102

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI---CTLVLARSNGLP 106
              +   L   L +    +VAHN+ F+ ++L   +     +       CT+ L++  GLP
Sbjct: 103 FKDISDELSARLAD--RVLVAHNAAFDWSMLAREYARAERVAPVRQRLCTIALSKELGLP 160

Query: 107 ---SALKAVGEALKL 118
                L+++     +
Sbjct: 161 LPNHKLESLAAHFGV 175


>gi|239978772|ref|ZP_04701296.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
          Length = 324

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 24/135 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHD------- 50
           +D ET        +   G+ +      V      L     D  PV +             
Sbjct: 22  VDVETTGLARDDRIVSAGVYQLDALGRVEDHWYTLVNPERDPGPVWIHGLTTGVLKDAPL 81

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI---CTLVLARSNGLP 106
              +   L   L +    +VAHN+ F+ ++L   +     +       CT+ L++  GLP
Sbjct: 82  FKDISDELSARLAD--RVLVAHNAAFDWSMLAREYARAERVAPVRQRLCTIALSKELGLP 139

Query: 107 ---SALKAVGEALKL 118
                L+++     +
Sbjct: 140 LPNHKLESLAAHFGV 154


>gi|229472251|gb|ACQ72640.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 8/145 (5%)

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                 R    A+ G  +V ADLAGIE R+LA          A   G            +
Sbjct: 7   PNEAEFRKLFTATPGMVMVGADLAGIELRMLAHYL-------ARFDGGRYGDVLINGDIH 59

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWED 477
              A      R + K +  A  Y  G +                        +  +    
Sbjct: 60  QENADKIGISRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPG 119

Query: 478 AENFCRWMQENHPEHAIEDLFIGTA 502
            +     ++    +++  +   G  
Sbjct: 120 LQKLVEAVKCKARQYSYINAIDGRR 144


>gi|1420721|emb|CAA99652.1| MIP1 [Saccharomyces cerevisiae]
          Length = 1280

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 87/332 (26%), Gaps = 73/332 (21%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P+         + + +   + ++       I   +++ V A  G   V AD+   E   
Sbjct: 670 IPKIVPMGTITRRAVENAWLTASNAKANR--IGSELKTQVKAPPGYCFVGADVDSEEL-W 726

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA----QVTKDQRAIGKVMELALGYQGG 444
           +A + G+        T          ++          Q+    R   K+      Y  G
Sbjct: 727 IASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTAQILGCSRNEAKIFNYGRIYGAG 786

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
           AK   ++      +L                          ++   +            +
Sbjct: 787 AKFASQLLKRFNPSLTD---------------------EETKKIANKLYENTKGKTKRSK 825

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                         + W                           +   K ++      P 
Sbjct: 826 LF-----------KKFWY---------------------GGSESILFNKLESIAEQETP- 852

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNAT 618
                   +G   +Y  +  ++  R  ++        +Q+   D   +L   M   +   
Sbjct: 853 ----KTPVLGCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCSMEYIIKKY 906

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                + +++HDEI     + D++ A+M   +
Sbjct: 907 NLEARLCISIHDEIRFLVSEKDKYRAAMALQI 938


>gi|310817168|ref|YP_003965132.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
 gi|308755903|gb|ADO43832.1| DNA polymerase III, epsilon subunit [Ketogulonicigenium vulgare
           Y25]
          Length = 224

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD----IPIHRWICTLVLARSNGLPS 107
            + Q   + + + ++  V HN+ F+   L A         I   R + TL++AR     +
Sbjct: 67  QVAQDFLDFIGDANL--VIHNAAFDVKFLNAELGWVKKPLIAPARAVDTLLIARRRFPGA 124

Query: 108 --ALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPN 149
             +L A+     + + K    G  L +        E +  R    
Sbjct: 125 QNSLDALCRRFGIDNSKRTLHGALLDSEILAEVYLELIGGRQPDF 169


>gi|313801939|gb|EFS43173.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA2]
          Length = 412

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T +  R   LP  +L  + E    ++
Sbjct: 88  A--GTQWILHAATQDMPCLAM---DGLRPDALFDTELAGRLLNLPRVSLGPMVERYCGVT 142

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W++   Y   DV +  ++ +++    
Sbjct: 143 LLKEHSASDWSRRPL----------------PRDWQV---YAALDVELLNDLREKILSDL 183

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  +D      L+ I D+      Q    L 
Sbjct: 184 HEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|229472229|gb|ACQ72629.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472329|gb|ACQ72679.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 39/142 (27%), Gaps = 8/142 (5%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    A+ G  +V ADLAGIE R+LA          A   G            +   
Sbjct: 10  AEFRKLFTATPGMVMVGADLAGIELRMLAHYL-------ARFDGGRYGDVLINGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           A      R + K +  A  Y  G +                        +  +     + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQK 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               ++    +++  +   G  
Sbjct: 123 LVEAVKCKARQYSYINAIDGRR 144


>gi|189426679|ref|YP_001953856.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
 gi|189422938|gb|ACD97336.1| 3'-5' exonuclease [Geobacter lovleyi SZ]
          Length = 381

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 51/185 (27%), Gaps = 25/185 (13%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           ET   +DL    +  Y E   V L           +            L+  L    +  
Sbjct: 25  ETELALDLEADSMHHYRE--KVCLLQLSNRAGTWLVDPLRLSD--LSPLRVLLARPGLRT 80

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGK 127
           V H   ++   L   F + +   +   T+V A+  G     L A+             G 
Sbjct: 81  VLHGGDYDIRSLHRDFGIVVQ--QMFDTMVAAQFTGATEFGLAALLREH--------FGI 130

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           EL  RF K         R             +Y   D     E+  RL     +     +
Sbjct: 131 ELDKRFQK----ADWSKRPLTT------EMADYAAHDTAHLLELADRLHARLEQLGRREW 180

Query: 188 LDQTI 192
           + +  
Sbjct: 181 VAEEC 185


>gi|325983345|ref|YP_004295747.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
 gi|325532864|gb|ADZ27585.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
          Length = 245

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 46/160 (28%), Gaps = 32/160 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
           M  + +D ET     L      +  E   V L    F       +           L+  
Sbjct: 1   MRQIVLDTETTG---LECKLGHRIVEIAAVELCNRQFTGSHFHYYLNPERESDEGALQVH 57

Query: 59  ----EALENTDV---------------TIVAHNSYFERTVLKACFNL-DIP-----IHRW 93
               E L++                   ++ HN+ F+   L     L ++        + 
Sbjct: 58  GLTMEFLQDKAKFYEISREFLNFISDAELIIHNAPFDVGFLNHELGLCNLKALDNYCSQI 117

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL LA+         L A+ E   + + K +    L+ 
Sbjct: 118 TDTLKLAKELHPGKRNNLDALCERYNIDNSKRKLHGALLD 157


>gi|144901019|emb|CAM77883.1| DNA polymerase III epsilon chain-like protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 619

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 71  HNSYFERTVLKACFNL-DIPIH-RWICTLVLARSNGLPS--ALKAVGEALKLSS 120
           HN  F+   L A      I +    + T++LA         +L+AV   L +  
Sbjct: 517 HNVAFDLKFLHAAQGETGIALRQPVLDTMILAALLDPGYDLSLEAVAGRLGVPP 570


>gi|313812910|gb|EFS50624.1| 3'-5' exonuclease [Propionibacterium acnes HL025PA1]
          Length = 412

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T +  R   LP  +L  + E    ++
Sbjct: 88  A--GTQWILHAATQDMPCLAM---DGLRPDDLFDTELAGRLLNLPRVSLGPMVERYCGVT 142

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W++   Y   DV +  ++ +++    
Sbjct: 143 LLKEHSASDWSRRPL----------------PRDWQV---YAALDVELLNDLREKILSDL 183

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  +D      L+ I D+      Q    L 
Sbjct: 184 HEVGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|196232584|ref|ZP_03131436.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
 gi|196223346|gb|EDY17864.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
          Length = 352

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 55/208 (26%), Gaps = 42/208 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E  S        +  Y E   + L       H + +          Q L EA   
Sbjct: 24  IPIDTEADS--------LHCYFE--KLCLIQISVPGHDLLIDPLAGIS--LQPLFEAFA- 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQK 122
               ++ H + ++  +L+      +       T++ AR  G    +L A+ +        
Sbjct: 71  -GKELIIHGADYDLRLLRR-VGFTV-TAPVFDTMIAARLCGIEEFSLAALIKRY------ 121

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                       K         R             +Y   D     EI   LE   ++ 
Sbjct: 122 ------FDVALTKASQKANWARRPLS------PQMADYAVKDTHYLLEIAGILEAELTR- 168

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQI 210
                    +       D A+A +    
Sbjct: 169 ------LDRMEWFRQSCDKAVAASAITK 190


>gi|328754581|gb|EGF68197.1| 3'-5' exonuclease [Propionibacterium acnes HL025PA2]
          Length = 412

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T +  R   LP  +L  + E    ++
Sbjct: 88  A--GTQWILHAATQDMPCLAM---DGLRPDDLFDTELAGRLLNLPRVSLGPMVERYCGVT 142

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W++   Y   DV +  ++ +++    
Sbjct: 143 LLKEHSASDWSRRPL----------------PRDWQV---YAALDVELLNDLREKILSDL 183

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  +D      L+ I D+      Q    L 
Sbjct: 184 HEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|314918304|gb|EFS82135.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA1]
          Length = 412

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T +  R   LP  +L  + E    ++
Sbjct: 88  A--GTQWILHAATQDMPCLAM---DGLRPDDLFDTELAGRLLNLPRVSLGPMVERYCGVT 142

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W++   Y   DV +  ++ +++    
Sbjct: 143 LLKEHSASDWSRRPL----------------PRDWQV---YAALDVELLNDLREKILSDL 183

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  +D      L+ I D+      Q    L 
Sbjct: 184 HEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|289425030|ref|ZP_06426807.1| 3'-5' exonuclease [Propionibacterium acnes SK187]
 gi|289154008|gb|EFD02696.1| 3'-5' exonuclease [Propionibacterium acnes SK187]
 gi|313792108|gb|EFS40209.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA1]
 gi|313838766|gb|EFS76480.1| 3'-5' exonuclease [Propionibacterium acnes HL086PA1]
 gi|314962767|gb|EFT06867.1| 3'-5' exonuclease [Propionibacterium acnes HL082PA1]
 gi|315077982|gb|EFT50033.1| 3'-5' exonuclease [Propionibacterium acnes HL053PA2]
 gi|327453174|gb|EGE99828.1| 3'-5' exonuclease [Propionibacterium acnes HL092PA1]
          Length = 412

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T +  R   LP  +L  + E    ++
Sbjct: 88  A--GTQWILHAATQDMPCLAM---DGLRPDDLFDTELAGRLLNLPRVSLGPMVERYCGVT 142

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W++   Y   DV +  ++ +++    
Sbjct: 143 LLKEHSASDWSRRPL----------------PRDWQV---YAALDVELLNDLREKILSDL 183

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  +D      L+ I D+      Q    L 
Sbjct: 184 HEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|125999975|ref|YP_001039646.1| DNA polymerase A domain-like protein [Erwinia amylovora phage
           Era103]
 gi|121621831|gb|ABM63405.1| DNA polymerase A domain-like protein [Enterobacteria phage Era103]
          Length = 833

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 49/183 (26%), Gaps = 14/183 (7%)

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
            A+R                       +    +          +        +R   IAS
Sbjct: 498 TAARFYEIYKRWPSLPEDGEWRVPAIAISIGTSTFRMRHRVLVNIPSRGLYPLRDLFIAS 557

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           +GKK++  D AG+E RVLA    +              V  +         +     R +
Sbjct: 558 KGKKVLGCDGAGLELRVLAHFMNDPEY---------SEVVLHGDIHTHNQEKAGLPLRDM 608

Query: 432 GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPE 491
            K    A  Y  G       A+  G+++     +        E          +Q +  E
Sbjct: 609 AKTFIYAFLYGSGDDNL---AAVCGVSVKEMKAI--RARFMAELPQLARLMAAVQASGNE 663

Query: 492 HAI 494
           +  
Sbjct: 664 YGY 666


>gi|50842545|ref|YP_055772.1| ribonuclease D [Propionibacterium acnes KPA171202]
 gi|295130624|ref|YP_003581287.1| 3'-5' exonuclease [Propionibacterium acnes SK137]
 gi|50840147|gb|AAT82814.1| ribonuclease D [Propionibacterium acnes KPA171202]
 gi|291375251|gb|ADD99105.1| 3'-5' exonuclease [Propionibacterium acnes SK137]
 gi|313764422|gb|EFS35786.1| 3'-5' exonuclease [Propionibacterium acnes HL013PA1]
 gi|313772196|gb|EFS38162.1| 3'-5' exonuclease [Propionibacterium acnes HL074PA1]
 gi|313807552|gb|EFS46039.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA2]
 gi|313810061|gb|EFS47782.1| 3'-5' exonuclease [Propionibacterium acnes HL083PA1]
 gi|313815960|gb|EFS53674.1| 3'-5' exonuclease [Propionibacterium acnes HL059PA1]
 gi|313818593|gb|EFS56307.1| 3'-5' exonuclease [Propionibacterium acnes HL046PA2]
 gi|313820361|gb|EFS58075.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA1]
 gi|313822834|gb|EFS60548.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA2]
 gi|313825235|gb|EFS62949.1| 3'-5' exonuclease [Propionibacterium acnes HL063PA1]
 gi|313830390|gb|EFS68104.1| 3'-5' exonuclease [Propionibacterium acnes HL007PA1]
 gi|313833761|gb|EFS71475.1| 3'-5' exonuclease [Propionibacterium acnes HL056PA1]
 gi|314915414|gb|EFS79245.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA4]
 gi|314920115|gb|EFS83946.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA3]
 gi|314925249|gb|EFS89080.1| 3'-5' exonuclease [Propionibacterium acnes HL036PA3]
 gi|314931637|gb|EFS95468.1| 3'-5' exonuclease [Propionibacterium acnes HL067PA1]
 gi|314955692|gb|EFT00094.1| 3'-5' exonuclease [Propionibacterium acnes HL027PA1]
 gi|314958090|gb|EFT02193.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA1]
 gi|314959968|gb|EFT04070.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA2]
 gi|314967866|gb|EFT11965.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA1]
 gi|314973393|gb|EFT17489.1| 3'-5' exonuclease [Propionibacterium acnes HL053PA1]
 gi|314976071|gb|EFT20166.1| 3'-5' exonuclease [Propionibacterium acnes HL045PA1]
 gi|314978539|gb|EFT22633.1| 3'-5' exonuclease [Propionibacterium acnes HL072PA2]
 gi|314983908|gb|EFT28000.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA1]
 gi|314989898|gb|EFT33989.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA3]
 gi|315084278|gb|EFT56254.1| 3'-5' exonuclease [Propionibacterium acnes HL027PA2]
 gi|315085621|gb|EFT57597.1| 3'-5' exonuclease [Propionibacterium acnes HL002PA3]
 gi|315088327|gb|EFT60303.1| 3'-5' exonuclease [Propionibacterium acnes HL072PA1]
 gi|315095938|gb|EFT67914.1| 3'-5' exonuclease [Propionibacterium acnes HL038PA1]
 gi|315098569|gb|EFT70545.1| 3'-5' exonuclease [Propionibacterium acnes HL059PA2]
 gi|315101430|gb|EFT73406.1| 3'-5' exonuclease [Propionibacterium acnes HL046PA1]
 gi|315105619|gb|EFT77595.1| 3'-5' exonuclease [Propionibacterium acnes HL030PA1]
 gi|327326219|gb|EGE68009.1| putative ribonuclease D [Propionibacterium acnes HL096PA2]
 gi|327330288|gb|EGE72037.1| putative ribonuclease D [Propionibacterium acnes HL097PA1]
 gi|327331905|gb|EGE73642.1| putative ribonuclease D [Propionibacterium acnes HL096PA3]
 gi|327443108|gb|EGE89762.1| 3'-5' exonuclease [Propionibacterium acnes HL013PA2]
 gi|327445890|gb|EGE92544.1| 3'-5' exonuclease [Propionibacterium acnes HL043PA2]
 gi|327448129|gb|EGE94783.1| 3'-5' exonuclease [Propionibacterium acnes HL043PA1]
 gi|327450750|gb|EGE97404.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA3]
 gi|327453907|gb|EGF00562.1| 3'-5' exonuclease [Propionibacterium acnes HL083PA2]
 gi|328753437|gb|EGF67053.1| 3'-5' exonuclease [Propionibacterium acnes HL020PA1]
 gi|328754168|gb|EGF67784.1| 3'-5' exonuclease [Propionibacterium acnes HL087PA1]
 gi|328760820|gb|EGF74386.1| putative ribonuclease D [Propionibacterium acnes HL099PA1]
 gi|332675465|gb|AEE72281.1| ribonuclease D [Propionibacterium acnes 266]
          Length = 412

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T +  R   LP  +L  + E    ++
Sbjct: 88  A--GTQWILHAATQDMPCLAM---DGLRPDDLFDTELAGRLLNLPRVSLGPMVERYCGVT 142

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W++   Y   DV +  ++ +++    
Sbjct: 143 LLKEHSASDWSRRPL----------------PRDWQV---YAALDVELLNDLREKILSDL 183

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  +D      L+ I D+      Q    L 
Sbjct: 184 HEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|237785839|ref|YP_002906544.1| DNA polymerase III subunit epsilon [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758751|gb|ACR18001.1| DNA polymerase III, epsilon subunit [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 236

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 41/150 (27%), Gaps = 39/150 (26%)

Query: 4   LFIDFETRSPIDL-------------------TKCGICKYAEDVC----VILFA--FGFD 38
           L  D ET     L                   T+       E       +   +  +  +
Sbjct: 19  LSFDLETTGTNPLQARIVTSALVSIHGGSANSTELLADPGIEIPESASQIHGISTEYARE 78

Query: 39  DHPVELWDCVHDPVMPQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                     HD V+ + ++      E     IV  N+ ++ T+L+      +       
Sbjct: 79  HGE------PHDDVLHKTIRAIYDGWERGQTLIVF-NAAYDLTILRHLEPSFVCSGLVFD 131

Query: 96  TLVLARSNGL----PSALKAVGEALKLSSQ 121
            LV+ R+       P  L  + +   +   
Sbjct: 132 PLVMGRALEPQRTGPRKLGTLVKRYGIQLD 161


>gi|296115251|ref|ZP_06833892.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978352|gb|EFG85089.1| DNA polymerase III exonuclease epsilon subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 226

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 33/148 (22%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL-- 57
           M   +  D ET     L      +  E   + L                 +  +P+    
Sbjct: 1   MKRSILFDTETTGLDPLNG---DRVIEIAALELIG-DLPSGRSFRVLIDPERDVPEEASR 56

Query: 58  -----KEALE---------NT------DVTIVAHNSYFERTVL----KACFNLDIPIHRW 93
                +  LE         +       D  ++AHN+ F+   L    +     ++ + R 
Sbjct: 57  VHGFTRADLEGQPKFAQIADEFLAFIGDDELIAHNAAFDFGFLNAEFRRAGLPELAMTRM 116

Query: 94  ICTLVLARSN--GLPSALKAVGEALKLS 119
           + TL +AR+   G+P++L A+     + 
Sbjct: 117 VDTLQIARARFPGMPNSLDALCRRFSID 144


>gi|295691552|ref|YP_003595245.1| DNA polymerase III subunit epsilon [Caulobacter segnis ATCC 21756]
 gi|295433455|gb|ADG12627.1| DNA polymerase III, epsilon subunit [Caulobacter segnis ATCC 21756]
          Length = 237

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 40/162 (24%)

Query: 2   ATLFIDFETRSPID-----LTKCGI---------------------CKYAEDVCVILFAF 35
             + +D ET          L + G                         AE   V   + 
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDPLRDMPAEAEKVHGLSS 62

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIH 91
            F               +     E + ++   +VAHN+ F+R      L+ C    I   
Sbjct: 63  AFLTGK------PKFHEIADRFVEFVGDS--VVVAHNAAFDRQFVNFELEKCGRAPIRED 114

Query: 92  RWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           RW+ TL +A  R  G+ ++L A+ +  K+S +  ++   LI 
Sbjct: 115 RWVDTLAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALID 156


>gi|229472471|gb|ACQ72750.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 39/142 (27%), Gaps = 8/142 (5%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    A+ G  +V ADLAGIE R+LA          A   G            +   
Sbjct: 10  AEFRKLFTATPGMVMVGADLAGIELRMLAHYL-------ARFDGGRYGDVLINGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           A      R + K +  A  Y  G +                        +  +     + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQK 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               ++    +++  +   G  
Sbjct: 123 LVEAVKCKARQYSYINAIDGRR 144


>gi|229472225|gb|ACQ72627.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472385|gb|ACQ72707.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 39/142 (27%), Gaps = 8/142 (5%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    A+ G  +V ADLAGIE R+LA          A   G            +   
Sbjct: 10  AEFRKLFTATPGMVMVGADLAGIELRMLAHYL-------ARFDGGRYGDVLINGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           A      R + K +  A  Y  G +                        +  +     + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDQKIGLSYDPQLSPTKARAKGAEIRQAYMDAIPGLQK 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               ++    +++  +   G  
Sbjct: 123 LVEAVKCKARQYSYINAIDGRR 144


>gi|218515424|ref|ZP_03512264.1| ribonuclease III protein [Rhizobium etli 8C-3]
          Length = 177

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 51/188 (27%), Gaps = 29/188 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           + +      + L         V +       +      E +
Sbjct: 19  DFITIDTE----------FLRETTFWPELCLIQMASPTLEVLVDPLAKG-IDLAPFFELM 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +T V  V H +  +  ++    N  +  H    T V A   G      +V     +S  
Sbjct: 68  ADTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFG---DSVSYDQLVSRI 122

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K            K         R             EY   DVT  R+++  L+    +
Sbjct: 123 KNVHI-------DKSSRFTDWSRRPLS------DKQLEYALADVTHLRDVYLSLKAELDR 169

Query: 182 EQELWYLD 189
           E    +L 
Sbjct: 170 EGRTSWLT 177


>gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 244

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 52/190 (27%), Gaps = 38/190 (20%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-----DVCVILFAFGF 37
           M  + +D ET                       LT   +  Y       D      A   
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPG----ALAV 56

Query: 38  DDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI----- 90
                E   D      +   +++ +      ++ HN+ F+   L      LD+P      
Sbjct: 57  HGLTTEFLRDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHC 114

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              I TLV A+        +L A+ +   +S+        L+      E +  +      
Sbjct: 115 GGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDS 174

Query: 149 NHREAWRLFG 158
              +     G
Sbjct: 175 LVIDMLDDAG 184


>gi|149915004|ref|ZP_01903533.1| ribonuclease D [Roseobacter sp. AzwK-3b]
 gi|149811192|gb|EDM71029.1| ribonuclease D [Roseobacter sp. AzwK-3b]
          Length = 385

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 73/298 (24%), Gaps = 60/298 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDD---HPVELWDCVHDPVM 53
             + +D E     T                   + L              L D +   + 
Sbjct: 21  DYVTVDTEFLRERTYYS---------------KLCLVQLAVPGTGAEDAVLVDPLAGDLS 65

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
              L +   +  V  V H +  +  +     +  +       T V A   G        G
Sbjct: 66  MAPLYDLFRDESVVKVFHAARQDLEIF--FVDAGVIPAPLFDTQVTAMVCGF-------G 116

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +   +   +  KE + +  +         R   + +       +Y   DVT  R+I++
Sbjct: 117 EQVGYETLVRKIAKEQLDKTSRFTDWS---RRPLTDAQ------KKYALADVTHLRDIYE 167

Query: 174 RLEPLSSKEQELWYLDQTIN----DRGYCVDVALAHTLNQIVDVE-----RTKLDQELES 224
            L    ++     ++ + +        Y V    A    +  +         +       
Sbjct: 168 FLARKLAQSDRQKWVTEELQVLTAPETYRVSPDEAWKRVKTRNASGRFLAIVRELARFRE 227

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR-----VLSSNKKLTPQAIQVF 277
                    R        L     + L      T +      +L    +    A  + 
Sbjct: 228 EYAQARDVPRSRVYKDDAL-----VELASTKPATHEDLSRSRLLLREARKGEIADGIL 280


>gi|119717898|ref|YP_924863.1| 3'-5' exonuclease [Nocardioides sp. JS614]
 gi|119538559|gb|ABL83176.1| 3'-5' exonuclease [Nocardioides sp. JS614]
          Length = 442

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 64/233 (27%), Gaps = 40/233 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E        +    +Y+      L     +     L D +   V+   L+EALE 
Sbjct: 66  VAIDAE--------RASGYRYSSRAY--LIQLRREGSGTFLVDPIPF-VILPQLQEALE- 113

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
                + H +  +   L     + +   R   T +  R  G P   L  + E L      
Sbjct: 114 -GTEWILHAATQDLPCLAE---VGLLPSRLFDTELAGRLLGYPRVGLATLVETL------ 163

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK- 181
                 L +R  K  +      R  P        + EY   DV V  E+   L       
Sbjct: 164 ------LGSRLAKEHSAVDWSTRPLP------EPWLEYAALDVEVLAELRDLLADELETA 211

Query: 182 ---EQELWYLDQ-TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
              E      D      +   VD     +    V   R          T   +
Sbjct: 212 GKAEWARQEFDALRSFVQAERVDAWRRTSGLHRVRGRRALAAVRALWETRDEI 264


>gi|258626516|ref|ZP_05721356.1| ribonuclease D [Vibrio mimicus VM603]
 gi|258581227|gb|EEW06136.1| ribonuclease D [Vibrio mimicus VM603]
          Length = 385

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 59  FDGENLSLIDPTVIDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 115

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 116 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 159

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    +         Q   
Sbjct: 160 QLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQESE 196


>gi|260813766|ref|XP_002601587.1| hypothetical protein BRAFLDRAFT_124349 [Branchiostoma floridae]
 gi|229286886|gb|EEN57599.1| hypothetical protein BRAFLDRAFT_124349 [Branchiostoma floridae]
          Length = 1237

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 76/255 (29%), Gaps = 48/255 (18%)

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           + +  HP  L D +      + +K   E+  +  ++ HN  F+R+ +K  + +  P  R+
Sbjct: 206 YSWSPHPT-LDDLITMETAVRSIKPGGEDWREKIVIGHNVSFDRSYIKEQYFMKGPKTRF 264

Query: 94  ICTL-----------------VLARSNGLPSALKAVGEA------------------LKL 118
           + T+                 + +R+ G    LK V E                   L +
Sbjct: 265 LDTMSLHMAISGLTSFQRILWLASRA-GKKQGLKDVREYTSKTRKQFKGQGIGGWDWLNV 323

Query: 119 SS-QKMEEGKELIARFCKGETH--ECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           SS   + +   L     K E    +        + R  ++    YC  DV  T EIF   
Sbjct: 324 SSINNLGDVHVLYTGGPKLEKSERDVFVKGTLQDVRNQFQELMTYCARDVRATHEIFSMQ 383

Query: 176 EPLSSKEQELWYLDQ-TINDRGYCVDVA-----LAHTLNQIVDVERTKLDQELESLT-YG 228
            P+  +           +      + V                  + ++   L  L    
Sbjct: 384 LPMFLERFPHAVTLAGMLEMGQCYLPVNSNWERYLRDAEDTFQELQKEMKLSLMHLANDA 443

Query: 229 LVSSSRCLEKLKTWL 243
                    +   WL
Sbjct: 444 CQLMHNDRYQEDPWL 458



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 41/326 (12%), Positives = 85/326 (26%), Gaps = 28/326 (8%)

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            +PR   +     + +   PT +T+       +   +++ V A  G   + AD+   E  +
Sbjct: 805  IPRVVTAGTVTRRAVE--PTWLTASNARPDRVGSELKAIVQAPPGYHFIGADVDSQELWI 862

Query: 389  LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGG 444
             A +    +      T          +S        T       R   KV      Y  G
Sbjct: 863  AAILGDANFAGFHGCTSFGWMTLQGKKSSGTDLHSKTASTIGISRDHAKVFNYGRIYGAG 922

Query: 445  AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHA--IEDLFIGTA 502
                +++       +       K        +       + +E                 
Sbjct: 923  QPFAERLLLQFNHRMTQEEAGEKAKQMYAATKGVRENPDYEEEGSYGAIIPRVVTAGTVT 982

Query: 503  CERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI----------IARKRRDVPLVYMK 552
               V+  W    +   +      +A  Q       I          IA    D       
Sbjct: 983  RRAVEPTWLTASNARPDRVGSELKAIVQAPPGYHFIGADVDSQELWIAAILGDANFAGFH 1042

Query: 553  KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---- 608
               +   + L  G+     D+ +  +     +R       +       +VQ+ + D    
Sbjct: 1043 GCTSFGWMTL-QGKKSSGTDLHSKTASTIGISRDH---AKFVTSRVNWVVQSSAVDYLHL 1098

Query: 609  --ILAEGMMNATKAGYDIVLTVHDEI 632
              +    + N         +++HDE+
Sbjct: 1099 MLVCMRWLFNKYNIDGRFCISIHDEV 1124


>gi|114328806|ref|YP_745963.1| DNA polymerase III subunit epsilon [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316980|gb|ABI63040.1| DNA polymerase III, epsilon chain [Granulibacter bethesdensis
           CGDNIH1]
          Length = 225

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 38/145 (26%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD---HPVELWDCVHDPVMPQVL----- 57
            D ET     LT     +  E   + LF    +D                +P+       
Sbjct: 7   FDTETTGFDPLTG---DRILEIAALELF----NDLPTGNTFHTLVDPCRDVPEEATRVHG 59

Query: 58  --------KEALEN---------TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICT 96
                   K    +             ++AHN+ F+   L           +   R I T
Sbjct: 60  FTAEMLRGKPLFADIVEDLLAFFGRDPLIAHNAPFDFNFLNAEFARLGKPKLDPARMIDT 119

Query: 97  LVLARSN--GLPSALKAVGEALKLS 119
           LV+A++   G+P++L A+     + 
Sbjct: 120 LVMAKARFPGMPNSLDALCRRFSID 144


>gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
           Madrid E]
 gi|6685391|sp|Q9ZCJ9|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon
 gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii]
 gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii Rp22]
          Length = 229

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 51/180 (28%), Gaps = 30/180 (16%)

Query: 2   ATLFIDFETRSPID-----LTKCGICKYAEDVCVIL--FAFGFDDH-----PVELWDCVH 49
             + +D ET          + + G      +  +    F F  +              + 
Sbjct: 5   REIILDTETTGLDPQQGHRIVEIGA-IEMVNKVLTGKHFHFYINPERDMPFEAYKIHGIS 63

Query: 50  DPVMPQV-LKEALENTDVTIVA------HNSYFERTV-------LKACFNLDIPIHRWIC 95
              +    L + + N  +  +A      HN+ F+          LK      + +   I 
Sbjct: 64  GEFLKDKPLFKTIANDFLKFIADSTLIIHNAPFDIKFLNHELSLLKRTEIKFLELTNTID 123

Query: 96  TLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPNHRE 152
           TLV+AR+       +L A+ +  K+ +   +    L       E        R       
Sbjct: 124 TLVMARNMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALTGGRQSTFKMI 183


>gi|85708302|ref|ZP_01039368.1| DNA polymerase I domain protein [Erythrobacter sp. NAP1]
 gi|85689836|gb|EAQ29839.1| DNA polymerase I domain protein [Erythrobacter sp. NAP1]
          Length = 515

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 49/201 (24%), Gaps = 12/201 (5%)

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
           + +            E    A      M +             T    +    +      
Sbjct: 303 SRDDAQLCYVDFDQFEVGIMAALSGDEMLKELYAAGDMYELFATTQLGLVDNRKAAKQLF 362

Query: 518 SELWNELHQAF--EQTIENGKAIIARKRRDVPLVYMKKDKNNLILML-PSGRSLVYRDVG 574
                 + +    +  +  G      K+        +  K  +      +GR        
Sbjct: 363 LSYAYGMSRKALVDAAVSLGVERQKAKKAFRQFRGYEDWKRTVWTEFQKAGRVSSILGNH 422

Query: 575 NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK-AGYDIVLTVHDEIV 633
             R      T +  R           +VQ  +  I    +++        + L +HD ++
Sbjct: 423 FRREGQGQLTGKEQRSA------VSQVVQGTASLIFKRALISVASLEDLRVALPMHDALL 476

Query: 634 CE--TPDTDEFNASMLYHLMT 652
            E  + +T      +   +MT
Sbjct: 477 FEHRSDETPAKVVEVFESVMT 497


>gi|307748034|gb|ADN91304.1| Polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 276

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 46/201 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M       +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 91  IDGQNEKEMIANFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 150

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 151 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 200

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD----QTINDRG 196
                    +        EYC+ DV  T  +F + E + +   E  Y+D         R 
Sbjct: 201 --------FYENKLEKIHEYCESDVLNTYMLFLKYELIKANVDEEDYVDFLSYMRDFLRE 252

Query: 197 YCVDVALAHTLNQIVDVERTK 217
              D +      +  + E +K
Sbjct: 253 KKSDRSYTEVFAKACESEISK 273


>gi|289427165|ref|ZP_06428881.1| 3'-5' exonuclease [Propionibacterium acnes J165]
 gi|289159634|gb|EFD07822.1| 3'-5' exonuclease [Propionibacterium acnes J165]
          Length = 395

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 21  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 70

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T +  R   LP  +L  + E    ++
Sbjct: 71  A--GTQWILHAATQDMPCLAM---DGLRPDDLFDTELAGRLLNLPRVSLGPMVERYCGVT 125

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W++   Y   DV +  ++ +++    
Sbjct: 126 LLKEHSASDWSRRPL----------------PRDWQV---YAALDVELLNDLREKILSDL 166

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  +D      L+ I D+      Q    L 
Sbjct: 167 HEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 223


>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
 gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
           goodfellowii F0264]
          Length = 1438

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 42/142 (29%), Gaps = 31/142 (21%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------- 50
            +  D ET         + + G  K      +  F+   +       D   +        
Sbjct: 412 YVVFDIETTGLDPYKDKIIEIGAIKLKGKEIIDEFSVFINPE----IDIPEEITALTNIT 467

Query: 51  -------PVMPQVLKEALE-NTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
                    +  VL + LE   D T+VAHN+ F+   +        L+      I TL  
Sbjct: 468 NDMVKDAEKVETVLPKFLEFCKDTTVVAHNAKFDVGFINQKAKNLGLEYSP-SVIDTLHW 526

Query: 100 ARSNGLPS---ALKAVGEALKL 118
           AR          LK +     +
Sbjct: 527 ARILLPEQKRFGLKYIANYFNV 548


>gi|229472559|gb|ACQ72794.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 172

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 59/265 (22%), Gaps = 99/265 (37%)

Query: 373 GKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIG 432
           G  +V ADLAGIE R+LA          A   G            +   A      R + 
Sbjct: 1   GYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENADKIGISRRLV 53

Query: 433 KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
           K +  A  Y  G K       +    L+  A                             
Sbjct: 54  KTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA-------------------------- 84

Query: 493 AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMK 552
                      + +++A+      + +L   +    E                       
Sbjct: 85  ---------KGKEIRQAYMDAIPGLEKLVTAVKSKAES---------------------- 113

Query: 553 KDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAE 612
                  + L  GR                             K    ++Q  +  +   
Sbjct: 114 -----GYIQLCDGRRCPVDGSH---------------------KALNYLLQGSAGCVAKL 147

Query: 613 GM------MNATKAGYDIVLTVHDE 631
            M      +   +     +  +HDE
Sbjct: 148 WMVHTHNVIKLNQIKAYQLAFIHDE 172


>gi|332983437|ref|YP_004464878.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
           BON]
 gi|332701115|gb|AEE98056.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
           BON]
          Length = 296

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 20/113 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILF--AFGFDDHPVELWDCV------------H 49
           + ID ET          +   A          ++    +P                   H
Sbjct: 123 VAIDLETTGLNPAIDKIVEIAAVKFKYGEIIDSYTTLINPGIHIPSSASKINHITDETVH 182

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTL 97
                  +   L N   D  +V HN+ F+   LK        DI  + +I TL
Sbjct: 183 GAPDLSEVLPNLLNFIGDSILVMHNASFDLKFLKYHAAKLGYDIS-NPFIDTL 234


>gi|109948241|ref|YP_665469.1| DNA polymerase III subunit epsilon [Helicobacter acinonychis str.
           Sheeba]
 gi|109715462|emb|CAK00470.1| DNA polymerase III [Helicobacter acinonychis str. Sheeba]
          Length = 282

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 40/140 (28%), Gaps = 30/140 (21%)

Query: 5   FIDFETRSPIDLTK---------CGICKYAEDVCVILFAFGFDDHPVELWDCV------- 48
           FID ET     L               K       +         P  + D         
Sbjct: 70  FIDLETTGSCPLKHEILEIGAVQVSGGKIINRFETL---VKVKSVPDYISDLTGIAYEDT 126

Query: 49  ----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLAR 101
                     Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+R
Sbjct: 127 LNAPSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSR 184

Query: 102 --SNGLPSALKAVGEALKLS 119
                +  +L  + E L   
Sbjct: 185 RAILSMRYSLSFLKELLGFG 204


>gi|225021280|ref|ZP_03710472.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946013|gb|EEG27222.1| hypothetical protein CORMATOL_01292 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 408

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 78/305 (25%), Gaps = 58/305 (19%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-EALENTDVTIV 69
              +D  +    +Y     V L           L D   DP          L +T    V
Sbjct: 38  WCAVDTERVSGFRY--HNRVCLLQIRRAGAGTMLIDVESDPQATTDFMGRVLADTG--WV 93

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKE 128
            H +  +   L+    L +   +   T +  R  G     L A+ E              
Sbjct: 94  VHAATSDLPYLEQ---LRLRPAQLFDTELAGRFLGFHRVNLAAMVEYY------------ 138

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
                 +   +    D ++      W    +Y   DV     +   +    +++      
Sbjct: 139 ---LGVRLRKNHGGEDWSRRPIPSEW---LDYAALDVEYLLPLADAMRSELTQQSPKDEW 192

Query: 189 DQTINDRGYCV------------DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC- 235
                D    V            D+     L     ++  +   ++         ++   
Sbjct: 193 VAEECDYLTRVYRGYSPTPKSWEDLKGVRRLRTSKQLQVARWLWQVREKLAQASDTAVSR 252

Query: 236 --LEKLKTWLFLETGLHLEDLTETT----------------CQRVLSSNKKLTPQAIQVF 277
              +K    L  E    +  + +TT                  + L ++++  P+   + 
Sbjct: 253 LLPDKTLVALATELPTTVPKVMKTTGYPPRLRRKARYWANQVDKALRTSRERWPEPFPIP 312

Query: 278 NNRMR 282
             R +
Sbjct: 313 TYRDK 317


>gi|221068113|ref|ZP_03544218.1| DNA polymerase B region [Comamonas testosteroni KF-1]
 gi|220713136|gb|EED68504.1| DNA polymerase B region [Comamonas testosteroni KF-1]
          Length = 673

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 64/212 (30%), Gaps = 51/212 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVMPQVLK 58
             + +D ET    DL    +   AE +  +L     +  P     L  C     M + L 
Sbjct: 37  KVVSLDIETSQHQDLYSIALDGMAERMVFMLGQPSSEPEPTTGFALVYCSSRQEMIKQLN 96

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKA----------------------------CFNLD 87
           +     + DV  V  N   F+  VL+                                  
Sbjct: 97  DWFARNDPDVI-VGWNVIQFDLRVLQKTADDCGIPLLPGRERTPIAWRTHPGKQGYLFAP 155

Query: 88  IPIHRWICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +P    I     + A        +L+ V + L      + EGKE+   + K    E  Y 
Sbjct: 156 MPGRAVIDGIEALRAAVWSFSSFSLENVSQEL------LGEGKEIGDEYDKMAEIERRYQ 209

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           ++KP           Y   D  +   IF++ +
Sbjct: 210 QDKP-------ALASYNLRDCELVLRIFEKAK 234


>gi|71726088|gb|AAZ39211.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
          Length = 238

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 57/196 (29%), Gaps = 41/196 (20%)

Query: 1   MATLFIDFETRSPID------LTKCGIC------------------KYAEDVCVILFAFG 36
           M  + +D ET           L   G+                   + +E+      A  
Sbjct: 1   MRQIVLDTETTGLNPRTGDRILEIGGVELNNRMLTGNNFHQYINPERDSEEG-----ALA 55

Query: 37  FDDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI---- 90
                 E   D      + +  +  +      ++ HN+ F+   L      L++P     
Sbjct: 56  VHGLTTEFLSDKPKFAEIAEEFRAFIA--GAELIIHNAPFDIGFLNAEFKRLNLPPVHEQ 113

Query: 91  -HRWICTLVLARSNGLPS--ALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
            H  I TLV A+        +L A+ +   +S+  +   G  L +             +N
Sbjct: 114 VHGVIDTLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQN 173

Query: 147 KPNHREAWRLFGEYCK 162
             +  E   +  +   
Sbjct: 174 SLSMEEEVEVAADGAA 189


>gi|330991792|ref|ZP_08315742.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
 gi|329761260|gb|EGG77754.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
          Length = 395

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 51/196 (26%), Gaps = 45/196 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + ID E     T                   + L      ++ V + D     +    L 
Sbjct: 34  VTIDTEFVRERTYW---------------PELCLVQLA-GENDVVVIDTTAPGIDLSSLG 77

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG-EA 115
             L++  V  V H +  +  +    F+          T V A   G         +    
Sbjct: 78  GLLDDAGVIKVFHAARQDLEIFLHLFDRL--PAALFDTQVAAMVAGYGDQVGYDNLVWSL 135

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +   K     +                R     +        Y   DVT  R+++ +L
Sbjct: 136 LGVQIDKSHRFSDW-------------SVRPLSAAQIG------YAAADVTYLRQVYGQL 176

Query: 176 EPLSSKEQELWYLDQT 191
                KE  L ++   
Sbjct: 177 LAQLEKEGRLDWVAAE 192


>gi|221638369|ref|YP_002524631.1| Ribonuclease D [Rhodobacter sphaeroides KD131]
 gi|221159150|gb|ACM00130.1| Ribonuclease D [Rhodobacter sphaeroides KD131]
          Length = 385

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 62/278 (22%), Gaps = 57/278 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHDPVM-P 54
            + ID E     T                   + L             L D +  P M  
Sbjct: 22  YVTIDTEFLRERTYWS---------------KLCLIQMALPGKTGEAVLVDPIEGPDMSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L +   +     V H +  +  +         P+     T V A   G        GE
Sbjct: 67  EPLYDLFRHEATVKVFHAARQDLEIF-FVEGRAFPV-PLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ +  + +  +     +      +      Y   DVT  R I++ 
Sbjct: 118 QVGY--------ETLVKKIAREQLDKTSRFTDWSRRPLSDAQ-KTYAIADVTHLRVIYEW 168

Query: 175 LEPLSS------KEQELWYLDQTIN----DRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L             +E   +                     T +        +       
Sbjct: 169 LSAQIEKNGRQKWVEEELAILTDPETYTVRPEEAWLRIKTRTTSGRFLAVVKE-LARFRE 227

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
                 +  R        L     L +     T  + +
Sbjct: 228 DYAQKNNVPRSRVMKDDAL-----LEIASTRPTNSEEL 260


>gi|224824456|ref|ZP_03697563.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224602949|gb|EEG09125.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 242

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 49/165 (29%), Gaps = 42/165 (25%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-------DVC-VILFA 34
           M  + +D ET                       LT   +  Y         D   V   +
Sbjct: 1   MRQIILDTETTGLEPSQGHRIIEFAGLEMVNRKLTGRSLHLYIHPERDIDPDAERVHGIS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIP---- 89
             F             P +   L++A       ++ HN+ F+   L A F+ + I     
Sbjct: 61  LDFLADKPRF--AAVGPEIADFLRDA------ELIIHNAPFDVGFLNAEFDRIGIERVST 112

Query: 90  -IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                I TLV+AR        +L A+ +  ++          LI 
Sbjct: 113 LCASVIDTLVMARDQFPGKRNSLDALCDRFEIDRSNRTLHGALID 157


>gi|229472223|gb|ACQ72626.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 12/142 (8%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++     +      
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI----- 66

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQK-MASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                  R   K +  A  Y            S    +           +  +     E 
Sbjct: 67  ----GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQ 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               +++   E        G  
Sbjct: 123 LVEAVKKKAKEAGSIRSIDGRK 144


>gi|157962268|ref|YP_001502302.1| ribonuclease D [Shewanella pealeana ATCC 700345]
 gi|157847268|gb|ABV87767.1| ribonuclease D [Shewanella pealeana ATCC 700345]
          Length = 369

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 71/273 (26%), Gaps = 45/273 (16%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L +D E     T                   + L    +D   + L D +    + ++
Sbjct: 24  DLLVLDTEFVRTRTYY---------------ARLGLIQ-AYDGKTLALIDPLAVSNL-EL 66

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
             + L       + H+   +  V     N          + + A        L  +G   
Sbjct: 67  FWQLLSKESSVKLLHSCSEDLEVFARYGN--CQPTNLFDSQIAA-------GLAGMG--H 115

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            L   K+ E   L     KGE+      R     +        Y   DV    +++ +L 
Sbjct: 116 GLGYAKLVEQ-TLEVSLDKGESRTDWLKRPLTEAQ------LNYAANDVYYLYKLYPQLV 168

Query: 177 PLSSKEQELWYLDQT-INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
            L  ++  L ++ +  +      +D     T    V         +L  L        + 
Sbjct: 169 KLLEEQGRLDWVYEEGVRMTQGRLDTPEPETAYLKVKNAFQLSSNQLAVLRDLSQWRLKR 228

Query: 236 LEKLKTWL----FLETGLHLEDLTETTCQRVLS 264
             +    L         + L      +   +  
Sbjct: 229 ALQKDLALGFVVKDHALIALAKKQPKSTNDLFK 261


>gi|153951632|ref|YP_001397758.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939078|gb|ABS43819.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 264

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 42/175 (24%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 79  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 138

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++  F       
Sbjct: 139 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDMHGDEVMKLFYGN---- 192

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
                             EYC+ DV  T  +F + E +     E  Y+D     R
Sbjct: 193 ------------ELEKIHEYCESDVLNTYMLFLKYELIKGNVSEEDYVDFLSCMR 235


>gi|285017397|ref|YP_003375108.1| DNA polymerase III, epsilon subunit protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas
           albilineans]
          Length = 244

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 45/157 (28%), Gaps = 47/157 (29%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYAE---DVC-----VILFA 34
           M  + +D ET          +                   +Y     D       V    
Sbjct: 1   MRQIILDTETTGLEWKKGNRVVEIGAVELLERRPSGRHFHRYLRPDCDFEPGAQEVTGLT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALE--NTDVTIVAHNSYFERTVLKA-------CFN 85
             F             P   +V+ E LE  +    ++ HN+ F+   L          + 
Sbjct: 61  LEF---------LADKPEFHEVVDEFLEFIDGAELVI-HNASFDLGFLDYELSRLGESYG 110

Query: 86  LDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
             +     + TL+LAR        +L A+ + L + +
Sbjct: 111 CILDRASVVDTLLLARERFPGQRNSLDALCKRLGVDN 147


>gi|262171029|ref|ZP_06038707.1| ribonuclease D [Vibrio mimicus MB-451]
 gi|261892105|gb|EEY38091.1| ribonuclease D [Vibrio mimicus MB-451]
          Length = 381

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 55  FDGENLSLIDPTVIDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 111

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 112 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 155

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    +         Q   
Sbjct: 156 QLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQESE 192


>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
 gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Paenibacillus sp. HGF5]
          Length = 1438

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 96/360 (26%), Gaps = 63/360 (17%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDHP--VELW----------- 45
            +  D ET         + +    K  E   +  +A   + H                  
Sbjct: 421 YVVFDIETTGLSITANKIIELAAVKMHEGKEIGRYATFVNPHERIPYHIQQLTNINDDMV 480

Query: 46  -DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
            D      + +   E + +    +VAHN+ F+   ++       +D   + ++ TL LAR
Sbjct: 481 KDAPELEPVLKEFVEFVGDG--VLVAHNARFDMGFIQAALKNAGMDTLENPYLDTLELAR 538

Query: 102 SNGLP---SALKAVGEALKLSSQKME-EGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                     L  + +  K+  +       + IA            D+ K          
Sbjct: 539 LVHPGLKNHRLNTLADKYKVLLESHHRAIDDTIALAGILNGLLSDVDKTKGVK--MLDRL 596

Query: 158 GEYCKGDVTVT-------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN-- 208
            +Y   D++ T         +    +    K   + +       R  C+  +    +   
Sbjct: 597 NDYVGTDLSNTRPFHCGIYALNMTGKKNLYKLISMSH--TEYFKRVPCIPKSKLQEMRDG 654

Query: 209 ----------QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
                     +  +    K ++E E +             +   L  +  +   +  +T 
Sbjct: 655 LLVLSGCEKGEFFETVLNKTEEEAEEIAGFYDVLEIQPLTMYMHLVDKGLVGSPEEIKTA 714

Query: 259 CQRVL---SSNKKLTPQAI----QVFNNRMRASRSAV----LKLNTLVEAMNSDGRLRGT 307
             +V+       K  P            R +  R          + L +    D   R T
Sbjct: 715 ISKVVRIGEKLNK--PVIATGNVHYLEPRDKLFRDITIHGITGFSPLKDMRKPDAHFRTT 772


>gi|262342321|gb|ACY54671.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 66/275 (24%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGGIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K         GL+ +         +            
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI-------GLSYDPQPSDKAATA------------ 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|226491678|ref|NP_001141141.1| hypothetical protein LOC100273227 [Zea mays]
 gi|194702850|gb|ACF85509.1| unknown [Zea mays]
          Length = 339

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 59/208 (28%), Gaps = 30/208 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL          +  + +    F D  V L D       + Q  K AL
Sbjct: 52  VIGFDCE---GVDL--------CRNGALCIMQLAFPDA-VYLVDAIEGGKELIQACKPAL 99

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALK- 117
           E+  +T V H+   +   L   F   I +H  + T + A S          K   +    
Sbjct: 100 ESDHITKVIHDCKRDSEAL--YFQFGIKLHNVMDTQI-AYSLIEEQEQEGKKMTSDDYNY 156

Query: 118 -----LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK-GDVTVTREI 171
                L + K   G   I    K E    L                      DV     I
Sbjct: 157 ISFVSLLADKRYCG---ILYPEKEEVRTLLRQDPNFWTIRPLSDMMVRAATDDVRFLLSI 213

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCV 199
           + ++    SK   LW L         C 
Sbjct: 214 YAKMMEKLSKV-SLWRLAVRSELYCRCF 240


>gi|71278230|ref|YP_270192.1| ribonuclease D [Colwellia psychrerythraea 34H]
 gi|71143970|gb|AAZ24443.1| ribonuclease D [Colwellia psychrerythraea 34H]
          Length = 379

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 57/205 (27%), Gaps = 39/205 (19%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             L ID E   TR+     K G+ +  +   + L        P+ + D            
Sbjct: 23  KVLAIDTEFVRTRTLY--AKLGLLQVCDGEQLALI------DPLAIDDLAP-------FW 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L N ++T V H    +  V     N        I + ++    G   +L         
Sbjct: 68  ALLTNENITKVLHACSEDLEVFLTAGN--CKPVNLIDSQIMMSFLGHGLSLGYAAMVKHF 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +  +++          K E+      R     +        Y   DV    +I+ +L   
Sbjct: 126 TDIELD----------KSESRTDWTKRPLTEKQLD------YASADVDHLFDIYPKLLA- 168

Query: 179 SSKEQELWYLDQTINDRGYCVDVAL 203
               Q  +     I      +D   
Sbjct: 169 -EITQAGFLAYAQIET-QSMIDKKF 191


>gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
 gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31]
          Length = 238

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 40/162 (24%)

Query: 2   ATLFIDFETRSPID-----LTKCGI---------------------CKYAEDVCVILFAF 35
             + +D ET          L + G                         AE   V   + 
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDPLRDMPAEAQKVHGLSI 62

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIH 91
            F           H   +     E + ++   ++AHN+ F+R+     L+ C    +P  
Sbjct: 63  EFLTGK----PKFH--EIADAFLEFVGDS--PVIAHNAAFDRSFVNFELEKCNRGPLPES 114

Query: 92  RWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           RW+ TL +A  R  G+ ++L A+ +  K+S    ++   LI 
Sbjct: 115 RWVDTLAMAKKRFPGMYNSLDALCKRFKISLDSRDKHGALID 156


>gi|147677749|ref|YP_001211964.1| hypothetical protein PTH_1414 [Pelotomaculum thermopropionicum SI]
 gi|146273846|dbj|BAF59595.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 937

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 43/150 (28%)

Query: 1   MATLFI-DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP 54
           +  + + D ET     L+     +  E   V L         +++ D  H        +P
Sbjct: 2   IKEIVVCDLETTGLDPLS----DRIIEIGLVRL-------KDLKIVDIYHTMVNPGRPLP 50

Query: 55  QVLKEA--LENTD----------VTIV----------AHNSYFERTVLKACFNLDIPIHR 92
             +K    L+++D             V           HN  F+   L A   +    + 
Sbjct: 51  LKIKNLTGLDDSDLASAPAFSGVREKVLGFIGDAPIAGHNIRFDMGFLAAAGGISFK-NP 109

Query: 93  WICTLVLARSN---GLPSALKAVGEALKLS 119
              T+ LAR          L+++ E L + 
Sbjct: 110 AYDTVELARLAVPGLPTYRLESLCERLNVE 139


>gi|307212494|gb|EFN88225.1| Exosome component 10 [Harpegnathos saltator]
          Length = 804

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 42/179 (23%), Gaps = 32/179 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E  S                   L      D    L D +        L E  
Sbjct: 194 NEIAVDLEHHSYRSFQGVT----------CLMQISTVDTD-YLIDTLILRSELHQLNEIF 242

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
               +  V H + F+   L+   +L + +     T   A+    P  +L  + +      
Sbjct: 243 TKPTILKVFHGADFDIQWLQR--DLSLYVVNMFDTHQAAKQLNFPYLSLAFLLKKY---- 296

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                             H  L D       E       Y + D      I   L+   
Sbjct: 297 -----------CNINPNKHFQLADWRIRPLPEELMK---YAREDTHYLLHIKDMLKNEL 341


>gi|103487237|ref|YP_616798.1| ribonuclease D [Sphingopyxis alaskensis RB2256]
 gi|98977314|gb|ABF53465.1| ribonuclease D [Sphingopyxis alaskensis RB2256]
          Length = 395

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 75/293 (25%), Gaps = 59/293 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             + +D E     T                   + L     D       D +   +  + 
Sbjct: 24  DFIAVDTEFMRENTFW---------------PELCLIQVA-DTEHAAAIDPMAQGMDLKP 67

Query: 57  LKEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           L + L +N D+  V H    +  ++          H    T +   + G         E 
Sbjct: 68  LLDLLVDNEDMLKVFHAGGQDVEIIFNLTGKT--PHPIFDTQIGQMALGQ-------AEQ 118

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           +  S         L+  +   +  +     +        +   +Y  GDVT   +IF  +
Sbjct: 119 VGYS--------NLVEAWLGLQLDKGARFTDWSRRPLD-KRQIDYAIGDVTHLAKIFPMM 169

Query: 176 EPLSSKEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                +     +LD+ +          VD   A    + +   +  +   L +L      
Sbjct: 170 LDKLIRTGRGHWLDEEMEKLADPANYSVDPDKAWQRIK-IPSRKPDVLGRLRALAAWRER 228

Query: 232 SSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +R              L    + +      L+      P+           S
Sbjct: 229 EARNK-----------NLPRGRIVKD---ETLADLAAHPPKDQDGLGRVRGLS 267


>gi|319794398|ref|YP_004156038.1| DNA polymerase iii, epsilon subunit [Variovorax paradoxus EPS]
 gi|315596861|gb|ADU37927.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus EPS]
          Length = 240

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 32/147 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK--- 58
             + +D ET     L+     +  E  CV LFA     + + ++           LK   
Sbjct: 3   RQIVLDTETTG---LSAENGDRVIELGCVELFARKLTGNDLHIYFNPERESHEDALKVHG 59

Query: 59  ---EALENT---------------DVTIVAHNSYFERTVLKACFNL-DIPIHRWI----- 94
              + L +                   ++ HN+ F+   L   F    +P  R       
Sbjct: 60  LTTDFLRDKPKFATLANDIIEYLRGAELIIHNAAFDVGFLNKEFERAGLPPLRTFVAEVT 119

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLS 119
            TL +A+        +L A+ +   + 
Sbjct: 120 DTLAMAKLVYPGKRNSLDALCDRFGVD 146


>gi|262212405|gb|ACY35819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 65/275 (23%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 470

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 23/139 (16%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------PVM 53
           +  D ET   +     + + G  +  +   V    F    +P                 M
Sbjct: 279 VVFDTETTGLLPHKDEIVQIGAVRVVKGRIVEGEQFDTLVNPGIPIPPASTRVHKVSDRM 338

Query: 54  PQVLKEALENT--------DVTIVAHNSYFERTVLKACFN-LDIPI-HRWICTLVLARSN 103
            Q   + +           D  IVAHN+ F+   L+     +++   H  + T++L+   
Sbjct: 339 VQDAPDIITAGRQFHHFARDAVIVAHNAPFDMAFLRRHAKRMEVEWDHPILDTVLLSAVL 398

Query: 104 ---GLPSALKAVGEALKLS 119
                   L A+ + L + 
Sbjct: 399 FGASETHTLDALCDRLGIE 417


>gi|31711656|ref|NP_853574.1| gp14 [Enterobacteria phage SP6]
 gi|31505660|gb|AAP48753.1| gp14 [Enterobacteria phage SP6]
 gi|40787031|gb|AAR90005.1| 13 [Enterobacteria phage SP6]
          Length = 849

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 32/135 (23%)

Query: 556 NNLILMLPSGRSLVYRDVGNNR--SYLNTTTRQLTREYTYGGKL-----TENIVQAVSRD 608
               + LPS   L    +       YL        R    GG+L        ++Q     
Sbjct: 645 ARFEIELPSLARLRENVIAAGNKFGYLQAPDGHWGRIRMSGGELKEHTMLNVLLQMTGSL 704

Query: 609 ILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNASMLYHLMTSNPS 656
            +   ++       + G  +        V  VHDEI  E P+ +                
Sbjct: 705 CMKYALVKAFAVMRREGVALDNLGNPCGVANVHDEIQMEVPEEEVLYLDY---------- 754

Query: 657 WAKGLPLKAEGYESK 671
               LP   EG+ES+
Sbjct: 755 ---ELPFTLEGFESE 766



 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 43/157 (27%), Gaps = 14/157 (8%)

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            +    +       +  +        +R   IA +GK ++  D AG+E RVL+    +  
Sbjct: 528 AISIGTSTFRMRHRNVVNIPARGLYPLRDLFIAGKGKMILGCDGAGLELRVLSHFMNDPE 587

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
                       +  +         +    +R + K    A  Y  G      +A+  G+
Sbjct: 588 Y---------QEIVLHGDIHTHNQLKAGLPKRDMAKTFIYAFLYGSG---IANLAAVCGV 635

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
             +    +V                  +     +   
Sbjct: 636 TEDEMKEVVARFEIEL--PSLARLRENVIAAGNKFGY 670


>gi|88608300|ref|YP_506355.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600469|gb|ABD45937.1| DNA polymerase III, epsilon subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 228

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 33/149 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL---- 57
             + +D ET    D+           V V+ F        +       +  + +      
Sbjct: 5   RKVILDTETTGL-DMKNGDRVIEIGCVEVVDFRIT---GEIFHIYLNPEREISKEATRVH 60

Query: 58  ---KEALENT---------------DVTIVAHNSYFERTVLKACFNLD-----IPIHRWI 94
               E L ++                  IVAHN+ F+   L +          I +   I
Sbjct: 61  GITFEQLADSPKFIDIADDFLKFIDSSEIVAHNASFDIRFLNSELIRARQRRLIKLENVI 120

Query: 95  CTLVLARSN--GLPSALKAVGEALKLSSQ 121
            TL +AR    G P++L A+    ++S +
Sbjct: 121 DTLAMARKIFPGSPASLDALCRRFRISLE 149


>gi|262342141|gb|ACY54581.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 40/143 (27%), Gaps = 9/143 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   +A+ G+ +V ADL+GIE R+LA          +   G            +   
Sbjct: 10  KDFRQLFMATPGQIMVGADLSGIELRMLAHYL-------SRFDGGRYAEILLHGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAF-QKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           A      R   K +  A  Y  G     +                    +  +     E 
Sbjct: 63  ADKIGISRRQVKTVTYAFLYGAGDAKLGRSYDPQLTEKEAKKKGKEIRQAYMDAVPGLET 122

Query: 481 FCRWMQENHPEHAIEDLFIGTAC 503
               ++    E    +L  G  C
Sbjct: 123 LVTAVKSKA-ELGYINLCDGRRC 144


>gi|305680942|ref|ZP_07403749.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266]
 gi|305659147|gb|EFM48647.1| putative ribonuclease D [Corynebacterium matruchotii ATCC 14266]
          Length = 408

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 87/352 (24%), Gaps = 63/352 (17%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-EALENTDVTIV 69
              +D  +    +Y     V L           L D   DP          L +T    V
Sbjct: 38  WCAVDTERVSGFRY--HNRVCLLQIRRAGAGTMLIDVESDPQATTDFMGRVLTDTG--WV 93

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLSSQKMEEGK 127
            H +  +   L+    L +   +   T +  R  G     L A+ E  L +  +K   G+
Sbjct: 94  VHAATSDLPYLEQ---LRLRPAQLFDTELAGRFLGFHRVNLAAMVEHYLGVRLRKNHGGE 150

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           +   R    E                   + +Y   DV     +   +    +++     
Sbjct: 151 DWSRRPIPSE-------------------WLDYAALDVEYLLPLADAMRSELTQQSPKDE 191

Query: 188 LDQTINDRGYCV------------DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
                 D    V            D+     L     ++  +   ++         ++  
Sbjct: 192 WVAEECDYLTRVYRGYSPTPKSWEDLKGVRRLRTSKQLQVARWLWQVREKLAQASDTAVS 251

Query: 236 ---LEKLKTWLFLETGLHLEDLTETT----------------CQRVLSSNKKLTPQAIQV 276
               +K    L  E    +  + +TT                  + L ++++  P+   +
Sbjct: 252 RLLPDKTLVALATELPTTVPKVMKTTGYPPRLRRKARYWANQVDKALRTSRERWPEPFPI 311

Query: 277 FNNRMR---ASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFP 325
              R +       +     +          L      +G             
Sbjct: 312 PTYRDKPPSRYTWSRYYPESFPTLTMVREELAHVAAQVGIPVENMIQSSDTN 363


>gi|262212359|gb|ACY35796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 65/275 (23%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVAYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|262212347|gb|ACY35790.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 64/269 (23%), Gaps = 96/269 (35%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A+ G+  V ADL+GIE R+L+                       A     A    
Sbjct: 13  RRLFMATPGQVTVGADLSGIELRMLSHYLARYDTYFGDNLLNGDIHQLNADKIGTA---- 68

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G +       +    L+                        
Sbjct: 69  ----RKLVKTVTYAFLYGAGNEKI---GYSYDRLLSPQKAKA------------------ 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                +K+A+ +    +S+L + +  A                 
Sbjct: 104 -----------------KGREIKEAFIEAIPGLSDLLSAVKSAA---------------- 130

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                      N   +    GR ++                          K    ++Q 
Sbjct: 131 -----------NRGFVKGIDGRKILVDSPH---------------------KALNYLLQG 158

Query: 605 VSRDILAEGMMNATKAG--YDIVLTVHDE 631
            +  +    M+ A         +  VHDE
Sbjct: 159 SAGVVAKRWMVIANDNPFCCSQLAFVHDE 187


>gi|195489284|ref|XP_002092670.1| GE11539 [Drosophila yakuba]
 gi|194178771|gb|EDW92382.1| GE11539 [Drosophila yakuba]
          Length = 1009

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 50/168 (29%), Gaps = 16/168 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEA 60
            + +D E    I+L   G         + L   G       L+D    P M     LK  
Sbjct: 562 VVSLDCE---GINLGLKG--------EITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTV 610

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LE+  V  V H+   +   L       I +     T           + K V +A  +S 
Sbjct: 611 LEHDQVIKVIHDCRNDAANL--YLQFGILLRNVFDTQSAHAILQYQESGKQVYKAKYISL 668

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTV 167
             + E         K +  +      K   +    R    Y  GDV V
Sbjct: 669 NSLCEQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLV 716


>gi|262212357|gb|ACY35795.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 39/141 (27%), Gaps = 8/141 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                 R + K +  A  Y  G K               T        +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
              ++    ++   +   G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|312385767|gb|EFR30186.1| hypothetical protein AND_00361 [Anopheles darlingi]
          Length = 526

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 45/179 (25%), Gaps = 34/179 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E             +  +    +            + D +       VL E   
Sbjct: 230 QIAIDLE---------HHSYRTFQGFTCL-MQLSTRKKD-YIVDTLALRDELHVLNEVFT 278

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLSS 120
           +     V H +  +   L+      + +     T   AR        L+ + +    + +
Sbjct: 279 DPRKLKVLHGAISDIEWLQRDLG--LYLVNMFDTGEAARVLQFSRIGLQFLLKHYCNIET 336

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K  +  +                R  P        F EY + D      I+ R+    
Sbjct: 337 DKAYQLADW-------------RMRPLPPA------FIEYARKDTHYLLYIYDRIRNDL 376


>gi|331229914|ref|XP_003327622.1| DNA polymerase gamma [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309306612|gb|EFP83203.1| DNA polymerase gamma [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1303

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 68/279 (24%), Gaps = 13/279 (4%)

Query: 257  TTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRT 316
            +    V          A    N R   S S              D  +         +  
Sbjct: 736  SDSAHVTLKAADSHALAD---NARQALSMSMQCSYWLNASQRIKDQMVIWESSLPQENSD 792

Query: 317  GRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKL 376
                        LP+ +       +      T + +       I   ++S + A  G  +
Sbjct: 793  NPEPSRCKQGLILPQVTVMGTITRRATE--KTWLAAANAKKNKIGTELKSMIRAPPGYAI 850

Query: 377  VVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIG 432
            V AD+   E   ++ + G+        T          +         T       R   
Sbjct: 851  VGADVDSEEL-WISSVMGDAQFGMHGATAIGWMTLEGTKVAGTDLHSKTASILGISRNDA 909

Query: 433  KVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEH 492
            KV   +  Y  G     ++        +               +  +N+   M E    +
Sbjct: 910  KVFNYSRIYGAGIAHAVQLLMKADPTASKTEATKLAKQLYASTKGVKNYRADMFERKFWY 969

Query: 493  AIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
               + ++    E++      ++     L   + +A  + 
Sbjct: 970  GGTESYLFNKLEQIA---LAEYPETPALNCGITRALRKC 1005


>gi|297743128|emb|CBI35995.3| unnamed protein product [Vitis vinifera]
          Length = 367

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 23/189 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G         ++  AF      + L D       + +  K AL
Sbjct: 87  VIGFDCE---GVDLCRHGSLC------IMQLAF---PDAIYLVDAIQGGEKLMKACKPAL 134

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN----GLPSALKAVGEALK 117
           E++ +T V H+   +   L   F   I +H  + + +         G   +       + 
Sbjct: 135 ESSYITKVIHDCKRDSEAL--YFQFGIKLHNVVDSQIAYSLIEEQQGRRRSPDDYISFVG 192

Query: 118 LSSQKMEEGKELIARFCKGE-THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           L +     G   I+   K E       D     +R    L       DV     I+ ++ 
Sbjct: 193 LLADPRYCG---ISYLEKKEVRVLLKQDPKFWTYRPLSELMVRAAADDVRFLPYIYYKMM 249

Query: 177 PLSSKEQEL 185
              ++    
Sbjct: 250 EELNEHSLW 258


>gi|90419527|ref|ZP_01227437.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
 gi|90336464|gb|EAS50205.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
          Length = 385

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 69/246 (28%), Gaps = 28/246 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L     DD  V +        +     + + +  +  V H +  +  ++      D
Sbjct: 39  PELCLIQMASDDLAVLVDPLADGLDL-APFFDLMRDERIVKVFHAARQDVEIIHKLG--D 95

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           I       T V A   G   +      A      +  +G     R  K         R  
Sbjct: 96  IIPVPLFDTQVAAMVCGFGES-----IAYDQLVARTTDG-----RIDKTSRFTDWRRRPL 145

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
                       Y   DVT  R++++ L    +++    ++D    +     D A     
Sbjct: 146 S------DQQLAYALADVTYLRDVYRFLSAQLAEKGRTRWVD---EEMAVLTDPATYDLH 196

Query: 208 NQIVDVERT------KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                             Q L+ +       +R  +K +  +  +  ++       T ++
Sbjct: 197 PDDAWRRLKLRVRKPIELQILKEVAAWREREAREADKPRGRILKDDAIYEIAQQAPTDEQ 256

Query: 262 VLSSNK 267
            LS  +
Sbjct: 257 SLSRLR 262


>gi|330836252|ref|YP_004410893.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
 gi|329748155|gb|AEC01511.1| DNA polymerase III, epsilon subunit [Spirochaeta coccoides DSM
           17374]
          Length = 231

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 38/149 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV------------------------CVILFAFG 36
           M  + +DFET +    + C +     D                          +      
Sbjct: 24  MEFVALDFETANGTHESACSLGLALMDGTGKLIDTWYQLIKPPSSFFDPANIEIHGIT-- 81

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRW 93
               P  + D      +    +E + +    ++AHN+ F+ T+LK     + ++IP   +
Sbjct: 82  ----PENVADAPSFDKVWSAAREFIAD--RLVIAHNATFDMTILKAMLHWYKMEIPRIGY 135

Query: 94  ICTLVLARSNGL---PSALKAVGEALKLS 119
            CTL L+R          L  + E     
Sbjct: 136 ACTLRLSRKVWPEMNNYKLTTLSEVFGFD 164


>gi|229472475|gb|ACQ72752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 12/142 (8%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++     +      
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYANILLNDDIHQVNADKI----- 66

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQK-MASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                  R   K +  A  Y            S    +           +  +     E 
Sbjct: 67  ----GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQ 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               +++   E        G  
Sbjct: 123 LVEAVKKKAKEAGSIRSIDGRK 144


>gi|315187162|gb|EFU20919.1| DNA polymerase III, epsilon subunit [Spirochaeta thermophila DSM
           6578]
          Length = 198

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 46/150 (30%), Gaps = 40/150 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----------------- 45
            +  D ET     +    +                   P   +                 
Sbjct: 21  VVAFDLETTGLDPVRHSVVEIACVKFQ--------GGEPRAFFSLLVKPPHPIPAEVTKI 72

Query: 46  ------DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
                 D    P +P VL   LE+      +VAHN+ F+ + L+   A      P  R I
Sbjct: 73  HGIGDQDVEEAPPLPSVL-PMLESFVGTHLLVAHNAPFDLSFLRIEYARCGRPYPGFRAI 131

Query: 95  CTLVLARSNGLP---SALKAVGEALKLSSQ 121
            T +LARS        +L ++  AL +  Q
Sbjct: 132 DTRLLARSVLPHLGRYSLASLTRALDIPLQ 161


>gi|262212399|gb|ACY35816.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342299|gb|ACY54660.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 39/141 (27%), Gaps = 8/141 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                 R + K +  A  Y  G K               T        +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
              ++    ++   +   G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
 gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Rhodobacteraceae bacterium KLH11]
          Length = 470

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 33/143 (23%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAFG--FDDHPVELWDCVHDPVMPQVL 57
           +  D ET   +     + + G  +  +   V         D                  +
Sbjct: 279 VVFDTETTGLLPHKDEIVQIGAVRVIKGRIVEGEQLDMLVDPG----IPIPAASTRVHKI 334

Query: 58  KEA--LENTDVTI--------------VAHNSYFERTVLKAC---FNLDIPIHRWICTLV 98
            +A  L   D+                VAHN+ F+   L        ++   H  + T++
Sbjct: 335 NDAMVLGAPDIAKAGLIFHQFSRDAVIVAHNAPFDMAFLHRHAKRMGVEW-THPVLDTVL 393

Query: 99  LARSN---GLPSALKAVGEALKL 118
           L+           L AV   L +
Sbjct: 394 LSAVLFGASETHTLDAVCARLGV 416


>gi|186475632|ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184192091|gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 249

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 59/196 (30%), Gaps = 39/196 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTG---LNARTGDRIIEIGCVELVNRRLTGNNLHFYINPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E   D      +   L++ +++ ++ I  HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLSDKPKFAEIADTLRDFIQDAELII--HNAPFDIGFLDAEFALLGLPPFSQYCG 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TLV A+S       +L A+ +   +S+        L+      E +  +    +  
Sbjct: 116 EVIDTLVRAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESL 175

Query: 150 HREAWRLFGEYCKGDV 165
                 + GE    D 
Sbjct: 176 V---IDMLGETAADDA 188


>gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 239

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 32/160 (20%)

Query: 1   MATLFIDFETRSPI------------------DLTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT      Y   D  +   A       
Sbjct: 1   MRQIVLDTETTGLDWRTGDRVIEIGCVELVNRSLTGRHFHVYINPDRGIDAEAVAV---H 57

Query: 42  VELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFN------LDIPIHRW 93
               + + D      + EA E+   D  +V HN+ F+   L           LD+     
Sbjct: 58  GITEEFLADKPRFAGIVEAFEDFVRDAELVIHNANFDVGFLNCELGLLGRPKLDVLCAGV 117

Query: 94  ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIA 131
           I TL +A+       ++L A+ +  ++ +        L+ 
Sbjct: 118 IDTLRMAKEQNPGKKASLDALCDRYEIDNGHRTLHGALLD 157


>gi|320037536|gb|EFW19473.1| DNA polymerase gamma [Coccidioides posadasii str. Silveira]
          Length = 1142

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 91/361 (25%), Gaps = 79/361 (21%)

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQN--------LPRPSRSHEELDQIITHLPTSITSDP 354
           R R   Q +   +    S      QN        LP+         + + +   + ++  
Sbjct: 637 RDRIMTQLVVYEKDLPGSSRDGKSQNPASNLGFILPQIIPMGTITRRAVENTWLTASNAK 696

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                +   +++ V A  G   V AD+   E   +A + G+                   
Sbjct: 697 ANR--VGSELKAMVKAPPGYVFVGADVDSEEL-WIASLVGDSQFQIHGGNAIGFMTLEGT 753

Query: 415 RSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           ++        T       R   KV      Y  G K    +      +++     V   +
Sbjct: 754 KAAGTDLHSKTAKILGISRNNAKVFNYGRIYGAGLKFAATLLRQFNPSISDDQTKVIAAN 813

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +E +      + + ++       + F+    E   +  R +                 
Sbjct: 814 LYKETKGTRTIRKTISDSPFWRGGTESFVFNKLEEFAEQERPRTP--------------- 858

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            +       A  RR +        +                                   
Sbjct: 859 -VLGAGITEALMRRFINKGSFMTSR----------------------------------- 882

Query: 591 YTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q+   D   +L   M   +        + ++VHDEI     + D++ A
Sbjct: 883 -------INWAIQSSGVDYLHLLIISMDFLVRRFNLNARLAISVHDEIRYLVKEEDKYRA 935

Query: 645 S 645
           +
Sbjct: 936 A 936


>gi|303314467|ref|XP_003067242.1| DNA polymerase gamma, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240106910|gb|EER25097.1| DNA polymerase gamma, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 1142

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 91/361 (25%), Gaps = 79/361 (21%)

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQN--------LPRPSRSHEELDQIITHLPTSITSDP 354
           R R   Q +   +    S      QN        LP+         + + +   + ++  
Sbjct: 637 RDRIMTQLVVYEKDLPGSSRDGKSQNPASNLGFILPQIIPMGTITRRAVENTWLTASNAK 696

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                +   +++ V A  G   V AD+   E   +A + G+                   
Sbjct: 697 ANR--VGSELKAMVKAPPGYVFVGADVDSEEL-WIASLVGDSQFQIHGGNAIGFMTLEGT 753

Query: 415 RSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           ++        T       R   KV      Y  G K    +      +++     V   +
Sbjct: 754 KAAGTDLHSKTAKILGISRNNAKVFNYGRIYGAGLKFAATLLRQFNPSISDDQTKVIAAN 813

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +E +      + + ++       + F+    E   +  R +                 
Sbjct: 814 LYKETKGTRTIRKTISDSPFWRGGTESFVFNKLEEFAEQERPRTP--------------- 858

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            +       A  RR +        +                                   
Sbjct: 859 -VLGAGITEALMRRFINKGSFMTSR----------------------------------- 882

Query: 591 YTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q+   D   +L   M   +        + ++VHDEI     + D++ A
Sbjct: 883 -------INWAIQSSGVDYLHLLIISMDFLVRRFNLNARLAISVHDEIRYLVKEEDKYRA 935

Query: 645 S 645
           +
Sbjct: 936 A 936


>gi|326472602|gb|EGD96611.1| DNA polymerase gamma [Trichophyton tonsurans CBS 112818]
          Length = 1140

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/464 (11%), Positives = 114/464 (24%), Gaps = 108/464 (23%)

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL---HLEDLTETTCQRVLS---- 264
             E  + +++  +       ++  L + K  ++ +                +  L     
Sbjct: 553 KKELERYEKQAFAACDMSEETNAALRESKEHVYFKLPHKDGPDARCASPLSKGYLQYFES 612

Query: 265 -SNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCV 323
                  P A +        + S    ++          R R T Q +   +    +G +
Sbjct: 613 GKLSSQFPLAKEAL----EMNASCSYWISA---------RDRITSQMVVYKKDLEKTGSL 659

Query: 324 ------------FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
                         PQ +P  + +   ++        +          +   +++ V A 
Sbjct: 660 GRELSPDSKVGFILPQVIPMGTITRRAVENTWLTASNAK------PNRVGSELKAMVRAP 713

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KD 427
            G   V AD+   E   +A + G+                   ++        T      
Sbjct: 714 PGYVFVGADVDSEEL-WIASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTAKILGI 772

Query: 428 QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQE 487
            R   KV      Y  G K    +      +++            +E +      R + E
Sbjct: 773 SRNNAKVFNYGRIYGAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRILSE 832

Query: 488 NHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVP 547
           N       + F+    E   +  R +                  +       A  RR + 
Sbjct: 833 NPFLRGGTESFVFNKLEEFAEQERPRTP----------------VLGAGITEALMRRFIN 876

Query: 548 LVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSR 607
                  +                                              +Q+   
Sbjct: 877 KGGFMTSR------------------------------------------INWAIQSSGV 894

Query: 608 D---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
           D   +L   M   +        + +TVHDEI     +TD++ A+
Sbjct: 895 DYLHLLIISMDYLIRRFNLDARLAITVHDEIRYVVRETDKYKAA 938


>gi|320168640|gb|EFW45539.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 385

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 18/143 (12%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L     ++ P  L+  +    +P  L+E L ++ +  V      + T L    +  + ++
Sbjct: 230 LLQLAVENGPCYLFHLIQMQGIPPALQELLADSRIAKVGVGIKNDVTRLVR--DYSLKVN 287

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF--CKGETHECLYDRNKPN 149
             +              L+ +     +  +     + L+ +   C  +    L   N   
Sbjct: 288 GAVD-------------LEELAAVRVVPLRTRWSLQALVQKTLNCLLDKSSELRLGNWEE 334

Query: 150 HREAWRLFGEYCKGDVTVTREIF 172
              +W    EY   D   + + +
Sbjct: 335 APLSWE-MQEYAANDAHASLQTY 356


>gi|308473314|ref|XP_003098882.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
 gi|308268021|gb|EFP11974.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
          Length = 860

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 52/193 (26%), Gaps = 26/193 (13%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69
           T   +DL    +  Y       L      D    + D         +L E   N  +  V
Sbjct: 288 TEFSVDLEHHEMRTYLGLT--CLIQISTRDED-FIIDPFPMWDCIGILNEPFTNPKILKV 344

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKE 128
            H +  +   L+  F + I       T V  +    P  +L  +    + +   +++  +
Sbjct: 345 FHGADNDVLWLQRDFGIHI--VNLFDTYVAMKKLKYPKFSLAYLA--FRFADVILDKQYQ 400

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELW 186
           L     +                        Y + D       +  L        +++L 
Sbjct: 401 LADWRARPLR----------------NAMINYAREDTHYLLYSYDMLREQLLKQDKKDLN 444

Query: 187 YLDQTINDRGYCV 199
            +    ND    V
Sbjct: 445 VVYSECNDLCVRV 457


>gi|294141241|ref|YP_003557219.1| ribonuclease D [Shewanella violacea DSS12]
 gi|293327710|dbj|BAJ02441.1| ribonuclease D [Shewanella violacea DSS12]
          Length = 369

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 83/307 (27%), Gaps = 45/307 (14%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L +D E     T                    +     +D   + L D V    +   
Sbjct: 24  DLLVLDTEFVRTRTYYAN----------------LGLIQAYDGKTLALIDPVAINNL-SE 66

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               L    +T V H+   +  V     N     +    + + A   G    L       
Sbjct: 67  FWSLLTEPGITTVLHSCSEDLEVFAR--NGACQPYNLFDSQIAAALCGFGHGL------- 117

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                K+ E   L     KGE+      R     +        Y   DV     ++ +L 
Sbjct: 118 --GYAKLVEQ-TLDISLDKGESRTDWMKRPLSEAQ------LNYAANDVYYLYNLYPQLL 168

Query: 177 PLSSKEQELWYLDQTIND----RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               ++  L +L +        R    D+  A+   +       K    L+ L    ++ 
Sbjct: 169 EKLQEQGRLAWLFEEGERMTSGRLTPPDLEQAYLKVKNAFQLSPKQLAYLKVLARWRLNK 228

Query: 233 SRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLN 292
           +        ++  +  L      +    + L    +LT Q  ++       +      + 
Sbjct: 229 AITRNLAVGFVVKDHALIGLAKKQPQNSQDLYKMIELTEQEKRIHGK-DLLALLKTADVE 287

Query: 293 TLVEAMN 299
              +A++
Sbjct: 288 NPPKAID 294


>gi|254707409|ref|ZP_05169237.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|261314895|ref|ZP_05954092.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|261303921|gb|EEY07418.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
          Length = 201

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLARSNGL-- 105
            +     E +      +VAHN+ F+       L      +I     + TL LAR      
Sbjct: 39  EILDEFLEFI--DGARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRKHPMG 96

Query: 106 PSALKAVGEALKLSSQKMEEGKELIA 131
           P++L A+ +   + +        L+ 
Sbjct: 97  PNSLDALCKRYGIDNSHRTLHGALLD 122


>gi|217072026|gb|ACJ84373.1| unknown [Medicago truncatula]
          Length = 187

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL          D  + +    F D  + L D      V+ +  K AL
Sbjct: 69  VIGFDCE---AVDL--------CRDGALCIIQLAFPDA-IYLVDAIEGGSVLIEACKPAL 116

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           E+  VT V H+   +   L   F   I ++  + T +     
Sbjct: 117 ESDYVTKVIHDCKRDSEAL--YFQFGIKLNNVVDTQIAYSLL 156


>gi|32128447|ref|NP_858982.1| exonuclease related to epsilon chain of DNA polymerase [Xanthomonas
           phage Xp10]
 gi|148727212|ref|YP_001285704.1| p35 [Xanthomonas phage Xop411]
 gi|31788510|gb|AAP58702.1| 34L [Xanthomonas phage Xp10]
 gi|116583512|gb|ABK00182.1| p35 [Xanthomonas phage Xop411]
          Length = 245

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 23/176 (13%)

Query: 22  CKYAEDVCVILFAFGFDD-HPVELWDC------VHDPVMPQVLKEALENTDVTIVAHNSY 74
               +D  ++ +   +   + V   D         D  +   L + L   DV  VAHN  
Sbjct: 17  DDIVQDWNILSYCAKWHGVNTVLYDDLREQSNPTKDKRLCTGLAKVLTEADVA-VAHNGK 75

Query: 75  -FERTVLKACFNLD----IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            F+   ++A  +++    IP  R + TL+ +R     ++        KL+      G + 
Sbjct: 76  KFDIRKIRARLSMNKLPPIPDTRIVDTLIESRKCFAHTS-------HKLAYLSTHFGDDG 128

Query: 130 IARFCKGETHECLYDRNKPN--HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           + +   G          +    +  AW    +Y   DV     ++  L       Q
Sbjct: 129 LRKLDHG-KFAGKALWRECQRGNLAAWEEMKKYNVVDVLAMESMYSELRGWFQGAQ 183


>gi|29838472|gb|AAO93094.1| DNA polymerase [Bacillus phage Bastille]
          Length = 279

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 56/239 (23%)

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
               +E++  Y            D             E  KL  +L+        +    
Sbjct: 69  KQVEEEKDALYALAVEEMLKAPKDRD----------KEILKLRNKLKDEED-RFFNPNSS 117

Query: 237 EKLKTWLFLETGLHLED----LTETTCQRVLSSN-----------------KKLTPQAIQ 275
           E  +  ++   G+ L      L ++  +  L  +                  +  P+  +
Sbjct: 118 EDKQKAMYKLGGIVLPFNREYLVDSAVENNLEEHEIEWYHYKADKHAFEYISENYPEHKE 177

Query: 276 VFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRP 332
           + +  +  S             +  ++    L G+    G + T R S      QNLPR 
Sbjct: 178 LADLFLEFSLVKTRKQSFTYKFLTMVDHHDILHGSFNSEG-TETSRLSSAAPNLQNLPRK 236

Query: 333 SRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS-EGKKLVVADLAGIEARVLA 390
           +      D                       ++   +   EG  L+  D + +E+RV+A
Sbjct: 237 TGDVFRFD-------------------YQHPIKRAFVTRFEGGALIQLDYSSLESRVMA 276


>gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 1436

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 479 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 536

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 537 RTINTEYGKHGLNFLAKKYGVE 558


>gi|317011686|gb|ADU85433.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           SouthAfrica7]
          Length = 287

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 40/140 (28%), Gaps = 30/140 (21%)

Query: 5   FIDFETRSPIDLTK---------CGICKYAEDVCVILFAFGFDDHPVELWDCV------- 48
           FID ET     +               K       +         P  + D         
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVSGGKIINRFETL---VKVKSVPDYISDLTGIAYEDT 131

Query: 49  ----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLAR 101
                     Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+R
Sbjct: 132 LNAPSVYEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSR 189

Query: 102 --SNGLPSALKAVGEALKLS 119
                +  +L  + E L   
Sbjct: 190 RAILSMRYSLSFLKELLGFG 209


>gi|269959116|ref|YP_003328905.1| ribonuclease D [Anaplasma centrale str. Israel]
 gi|269848947|gb|ACZ49591.1| ribonuclease D [Anaplasma centrale str. Israel]
          Length = 389

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 74/235 (31%), Gaps = 38/235 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E        +     Y     + L    +      + D + + +    L+E  ++
Sbjct: 28  LAVDTE------FVRSFNDYY---PRLCLLQMAYQGGQ-CVVDVLDERLDLSPLQEIFDD 77

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  V H+   +   L   F L +P      T   +           + E         
Sbjct: 78  EGICKVFHDCRQDLDALSQRF-LRLP-KPIFDTQTAS----------MLCEYH----DNS 121

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS-SKE 182
               +L+ +F   + ++ L+ R   +HR        Y   DVT   E++  L  +  +K 
Sbjct: 122 VGYSKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYGVLLDILVAKG 181

Query: 183 QELWYLDQTINDRGYCVDV-----------ALAHTLNQIVDVERTKLDQELESLT 226
           +  W+ ++     G  VD            +       IV     +  +++  L 
Sbjct: 182 RLTWFREEMAGIAGASVDNYDSLLEGMDFFSELGEAEAIVARSIIEWREKIARLF 236


>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
          Length = 1436

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 479 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 536

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 537 RTINTEYGKHGLNFLAKKYGVE 558


>gi|119174697|ref|XP_001239691.1| hypothetical protein CIMG_09312 [Coccidioides immitis RS]
          Length = 1142

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 91/361 (25%), Gaps = 79/361 (21%)

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQN--------LPRPSRSHEELDQIITHLPTSITSDP 354
           R R   Q +   +    S      QN        LP+         + + +   + ++  
Sbjct: 637 RDRIMTQLVVYEKDLPGSSRDGKSQNPASNLGFILPQIIPMGTITRRAVENTWLTASNAK 696

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                +   +++ V A  G   V AD+   E   +A + G+                   
Sbjct: 697 ANR--VGSELKAMVKAPPGYVFVGADVDSEEL-WIASLVGDSQFQIHGGNAIGFMTLEGT 753

Query: 415 RSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           ++        T       R   KV      Y  G K    +      +++     V   +
Sbjct: 754 KAAGTDLHSKTAKILGISRNNAKVFNYGRIYGAGLKFAATLLRQFNPSISDDQTKVIAAN 813

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQ 530
             +E +      + + ++       + F+    E   +  R +                 
Sbjct: 814 LYKETKGTRTIRKTISDSPFWRGGTESFVFNKLEEFAEQERPRTP--------------- 858

Query: 531 TIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
            +       A  RR +        +                                   
Sbjct: 859 -VLGAGITEALMRRFINKGSFMTSR----------------------------------- 882

Query: 591 YTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEFNA 644
                      +Q+   D   +L   M   +        + ++VHDEI     + D++ A
Sbjct: 883 -------INWAIQSSGVDYLHLLIISMDFLVRRFNLNARLAISVHDEIRYLVKEEDKYRA 935

Query: 645 S 645
           +
Sbjct: 936 A 936


>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
 gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
 gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
          Length = 1436

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 479 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 536

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 537 RTINTEYGKHGLNFLAKKYGVE 558


>gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 1438

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 1436

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 479 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 536

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 537 RTINTEYGKHGLNFLAKKYGVE 558


>gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 1438

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 1438

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 1442

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 485 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 542

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 543 RTINTEYGKHGLNFLAKKYGVE 564


>gi|296809768|ref|XP_002845222.1| DNA polymerase gamma [Arthroderma otae CBS 113480]
 gi|238842610|gb|EEQ32272.1| DNA polymerase gamma [Arthroderma otae CBS 113480]
          Length = 1133

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 82/330 (24%), Gaps = 75/330 (22%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +          +   +++ V A  G   V AD+   E
Sbjct: 666 PQVIPMGTITRRAVENTWLTASNAK------PNRVGSELKAMVRAPPGYVFVGADVDSEE 719

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   ++        T       R   KV      Y
Sbjct: 720 L-WIASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRNNAKVFNYGRIY 778

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +++            +E +      R + EN       + F+  
Sbjct: 779 GAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRMLSENPFLRGGTESFVFN 838

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +                  +       A  RR +        +      
Sbjct: 839 KLEEFAEQERPRTP----------------VLGAGITEALMRRFINKGSFMTSR------ 876

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 877 ------------------------------------INWAIQSSGVDYLHLLIISMDYLI 900

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                   + +TVHDEI     +TD++ A+
Sbjct: 901 RRFNLDARLAITVHDEIRYVVKETDKYKAA 930



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 57/230 (24%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTL----------------------------- 97
            I+ HN  ++R  +   +++    + +I T+                             
Sbjct: 237 IIIGHNIGYDRARILEEYDIKQSRNFFIDTMSLHVAVNGMCSQQRPTWMKHKKNRDLRDK 296

Query: 98  ---------VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCK----GETHECLYD 144
                    + +       + +   E L +    +   +++    C             +
Sbjct: 297 LVRGTESAELASMVENKMLSEEE--EELWVGRSSINSLRDVAKFHCNITIDKAQRNYFGE 354

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
            ++    E      +YC  DV +T  ++K++ P              +    + V  A  
Sbjct: 355 LDRAGINERLDELLDYCAADVAITHRVYKKVFPNF------------LETCPHPVSFAAL 402

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDL 254
             L+ ++       ++ L++       +   ++K    L     L ++D 
Sbjct: 403 RHLSSVILPVNETWEEYLKNAEETYHRALDSVQKRLVELCEA-ALKVKDK 451


>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
 gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
 gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
 gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
           A9719]
 gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A9299]
 gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A8115]
 gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6300]
 gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A6224]
 gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5937]
 gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A10102]
 gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A8117]
 gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
 gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 1438

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 235

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 55/192 (28%), Gaps = 38/192 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET            +  E  CV +                       A    
Sbjct: 1   MRQIVLDTETTGLNP---RSGDRVIEIGCVEMINRRLTGKNFHCYLNPERDSEEGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI---PIH 91
               E   D      +   L++ +  +   ++ HN+ F+   L       ++ +    + 
Sbjct: 58  GLTTEFLRDKPKFAAVAAELRDYI--SGAEVIIHNAPFDVGFLDAEFKRLDIPLFNTQVS 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECL--YDRNK 147
             I TLV A+        +L ++ +   +S+        L+      E +  +     + 
Sbjct: 116 GVIDTLVQAKEMHPGKRNSLDSLCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSL 175

Query: 148 PNHREAWRLFGE 159
               +     GE
Sbjct: 176 SMELDDGDQAGE 187


>gi|170758900|ref|YP_001785582.1| DNA polymerase III subunit epsilon [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405889|gb|ACA54300.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 309

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 37/147 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVEL-----------WDCV 48
           M  + IDFET +    + C I     +D  ++          V              +  
Sbjct: 1   MNFVAIDFETANEKRNSPCSIGIVVVKDGEIV--------EKVHYLIKPKEMRFMPINIG 52

Query: 49  HDPVMPQVLKEALENTDV-----------TIVAHNSYFERTVLKA---CFNLDIPIHRWI 94
              + P+++++ LE   +            + AHN+ F+ +VL+     +N+ +P   +I
Sbjct: 53  IHGIRPRMVQDELEFDKIWGKIKHYFNNNLVTAHNASFDISVLRNTLKLYNIKMPSFDYI 112

Query: 95  CTLVLA---RSNGLPSALKAVGEALKL 118
           CT+ L+    SN     L  V   L  
Sbjct: 113 CTMKLSKNFYSNIDNVRLNTVNNFLGY 139


>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
 gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
          Length = 1438

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
          Length = 1436

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 479 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 536

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 537 RTINTEYGKHGLNFLAKKYGVE 558


>gi|313893912|ref|ZP_07827478.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441476|gb|EFR59902.1| putative DNA polymerase III, epsilon subunit [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 209

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 22/140 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKY-AEDVCVILFAFG--------FDDH--PVELW---DC 47
             + +DFET +    + C +     +D  +   A+         FDD    +      D 
Sbjct: 3   DFVALDFETANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPKDV 62

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
           +H+    Q+     EN      +VAHN+ F+  VL+A    + +  P   + CT+ L+R+
Sbjct: 63  LHEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKLSRA 122

Query: 103 NGL---PSALKAVGEALKLS 119
                    L  +   + + 
Sbjct: 123 VWPDLVNHKLNTMAAYMGVE 142


>gi|262212361|gb|ACY35797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 39/141 (27%), Gaps = 8/141 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                 R + K +  A  Y  G K               T        +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
              ++    ++   +   G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|146278706|ref|YP_001168865.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556947|gb|ABP71560.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 237

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 51/178 (28%), Gaps = 33/178 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  + +D ET            +  E   V LF                +  MP    E 
Sbjct: 9   MREIVLDTETTGFEPSEG---HRIVEIGAVELFNH-MPTGRTYHQYINPERPMPNEAFEV 64

Query: 61  -------LENT---------------DVTIVAHNSYFERTVLKACFNL----DIPIHRWI 94
                  L +                +  +V HN+ F+   L           +P  R +
Sbjct: 65  HGLGDEFLRDKPVFSEIGSAFLEFVGEARLVIHNAAFDMKFLNFELGRVGLPRLPFERAL 124

Query: 95  CTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPN 149
            TL LA  R  G P+ L A+     + +  + + G  L +        E +  R    
Sbjct: 125 DTLALARKRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIGGRQPDF 182


>gi|313827523|gb|EFS65237.1| 3'-5' exonuclease [Propionibacterium acnes HL063PA2]
 gi|315108646|gb|EFT80622.1| 3'-5' exonuclease [Propionibacterium acnes HL030PA2]
          Length = 412

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T +  R   LP  +L  + E    ++
Sbjct: 88  A--GTQWILHAATQDLPCLAM---DGLRPDDLFDTELAGRLLNLPRVSLGPMVERYCGVT 142

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W++   Y   DV +  ++ +++    
Sbjct: 143 LLKEHSASDWSRRPL----------------PRDWQV---YAALDVELLNDLREKILSDL 183

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  +D      L+ I D+      Q    L 
Sbjct: 184 HEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1436

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 479 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 536

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 537 RTINTEYGKHGLNFLAKKYGVE 558


>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
 gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C427]
          Length = 1438

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|229472381|gb|ACQ72705.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472595|gb|ACQ72812.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 12/142 (8%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++     +      
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI----- 66

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQK-MASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                  R   K +  A  Y            S    +           +  +     E 
Sbjct: 67  ----GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQ 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               +++   E        G  
Sbjct: 123 LVEAVKKKAKEAGSIRSIDGRK 144


>gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 466

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 40/144 (27%)

Query: 5   FIDFETRSP----IDLTKCGICKYAEDV-------------------CVILFAFG-FDDH 40
           F+D ET         +T+ GI   A D                     +   +    +  
Sbjct: 13  FVDIETTGSHFDRDRITEIGIKTLANDGIQVWERLINPQTFIPQNIQRLTGISPQMVEGQ 72

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
           P           + + LK+ LE      VAHN+ F+   +K       +D    + +CT+
Sbjct: 73  PSF-------DQVAKELKQELE--GKIFVAHNARFDYGFIKASFKRVGIDFKP-KVLCTV 122

Query: 98  VLARSNGLP---SALKAVGEALKL 118
            L+R          L  +  A  L
Sbjct: 123 KLSRLLFPEQPRHNLDTIINAHGL 146


>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
 gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
 gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
           A5948]
 gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           930918-3]
 gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
           D30]
 gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9765]
 gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
 gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
 gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 1438

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|332557401|ref|ZP_08411723.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
 gi|332275113|gb|EGJ20428.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
          Length = 385

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 66/277 (23%), Gaps = 55/277 (19%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHDPVM-P 54
            + ID E     T                   + L             L D +  P M  
Sbjct: 22  YVTIDTEFLRERTYWS---------------KLCLIQMALPGKTGEAVLVDPIEGPDMSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L +   +     V H +  +  +         P+     T V A   G        GE
Sbjct: 67  EPLYDLFRHEATVKVFHAARQDLEIF-FVEGRAFPV-PLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ +  + +  +     +      +      Y   DVT  R I++ 
Sbjct: 118 QVGY--------ETLVKKIAREQLDKTSRFTDWSRRPLSDAQ-KTYAIADVTHLRVIYEW 168

Query: 175 LEPLSS------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL---ESL 225
           L             +E   +           + A      +        + +EL      
Sbjct: 169 LSAQIEKNGRQKWVEEELAILTDPETYTVRPEEAWLRIKTRTTSGRFLAVVKELARFRED 228

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
                +  R        L     L +     T  + +
Sbjct: 229 YAQKNNVPRSRVMKDDAL-----LEIASTRPTNAEEL 260


>gi|262212385|gb|ACY35809.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 39/141 (27%), Gaps = 8/141 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                 R + K +  A  Y  G K               T        +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
              ++    ++   +   G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1438

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
          Length = 1436

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 479 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 536

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 537 RTINTEYGKHGLNFLAKKYGVE 558


>gi|262342123|gb|ACY54572.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 39/141 (27%), Gaps = 8/141 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                 R + K +  A  Y  G K               T        +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQAYMDAIPGLQKL 123

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
              ++    ++   +   G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
 gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
           16795]
          Length = 1432

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 23/140 (16%)

Query: 4   LFIDFETRS---PIDLTKCGICKYAEDVCVIL-----------FAFGFDDHPVELWDCVH 49
           +  D ET       D          ++  ++             ++   +      D + 
Sbjct: 419 VVFDLETTGFSNKNDKITEIGAVKVKNFEIVDRFNELINPEKDISYKVQELTGITNDLIK 478

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
           D    + +         D  +VAHN+ F+   +       N++        TL+LAR   
Sbjct: 479 DKPTIEEILPKFMEFVGDSVLVAHNAEFDIGFINQKCKEMNIEFKNKSV-DTLMLARILL 537

Query: 105 LPS---ALKAVGEALKLSSQ 121
                  L  + + L +   
Sbjct: 538 PHLKRFKLNNLTKELGVPLH 557


>gi|163746426|ref|ZP_02153784.1| ribonuclease D [Oceanibulbus indolifex HEL-45]
 gi|161380311|gb|EDQ04722.1| ribonuclease D [Oceanibulbus indolifex HEL-45]
          Length = 385

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 58/200 (29%), Gaps = 41/200 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFG---FDDHPVELWDCVHDPVM 53
             + +D E     T                   + L        DD    L D + + + 
Sbjct: 21  DYVTVDTEFLRERTYYS---------------KLCLVQLAMPGTDDSNAVLVDPLAEGIS 65

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + L     +T V  V H +  +  +     + ++       T V A   G        G
Sbjct: 66  LEPLYTLFRDTSVVKVFHAARQDLEIF--FVDAEVFPEPLFDTQVAAMVCGF-------G 116

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +   +   +   + + +  +         R   + +        Y   DVT  R+I++
Sbjct: 117 EQVGYETLVRKIAHQALDKTSRFTDWS---RRPLTDAQ------KTYALADVTHLRQIYE 167

Query: 174 RLEPLSSKEQELWYLDQTIN 193
            L     +     ++ + + 
Sbjct: 168 FLARKLEETGRARWVAEELE 187


>gi|77462516|ref|YP_352020.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|126461450|ref|YP_001042564.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029]
 gi|77386934|gb|ABA78119.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
 gi|126103114|gb|ABN75792.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029]
          Length = 385

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 66/277 (23%), Gaps = 55/277 (19%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHDPVM-P 54
            + ID E     T                   + L             L D +  P M  
Sbjct: 22  YVTIDTEFLRERTYWS---------------KLCLIQMALPGKTGEAVLVDPIEGPDMSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L +   +     V H +  +  +         P+     T V A   G        GE
Sbjct: 67  EPLYDLFRHEATVKVFHAARQDLEIF-FVEGRAFPV-PLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ +  + +  +     +      +      Y   DVT  R I++ 
Sbjct: 118 QVGY--------ETLVKKIAREQLDKTSRFTDWSRRPLSDAQ-KTYAIADVTHLRVIYEW 168

Query: 175 LEPLSS------KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL---ESL 225
           L             +E   +           + A      +        + +EL      
Sbjct: 169 LSAQIEKNGRQKWVEEELAILTDPETYTVRPEEAWLRIKTRTTSGRFLAVVKELARFRED 228

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
                +  R        L     L +     T  + +
Sbjct: 229 YAQKNNVPRSRVMKDDAL-----LEIASTRPTNAEEL 260


>gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 1438

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 1438

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|153823321|ref|ZP_01975988.1| ribonuclease D [Vibrio cholerae B33]
 gi|126519155|gb|EAZ76378.1| ribonuclease D [Vibrio cholerae B33]
          Length = 246

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 47  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 104 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 147

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 148 QLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQESE 184


>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
 gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus A9635]
          Length = 1438

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M876]
 gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus C101]
 gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus aureus subsp. aureus M809]
 gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1438

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|15641986|ref|NP_231618.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121591319|ref|ZP_01678609.1| ribonuclease D [Vibrio cholerae 2740-80]
 gi|147675516|ref|YP_001217510.1| ribonuclease D [Vibrio cholerae O395]
 gi|153819311|ref|ZP_01971978.1| ribonuclease D [Vibrio cholerae NCTC 8457]
 gi|227082111|ref|YP_002810662.1| ribonuclease D [Vibrio cholerae M66-2]
 gi|229507927|ref|ZP_04397432.1| ribonuclease D [Vibrio cholerae BX 330286]
 gi|229511838|ref|ZP_04401317.1| ribonuclease D [Vibrio cholerae B33]
 gi|229518974|ref|ZP_04408417.1| ribonuclease D [Vibrio cholerae RC9]
 gi|229607472|ref|YP_002878120.1| ribonuclease D [Vibrio cholerae MJ-1236]
 gi|254849070|ref|ZP_05238420.1| ribonuclease D [Vibrio cholerae MO10]
 gi|298497984|ref|ZP_07007791.1| ribonuclease D [Vibrio cholerae MAK 757]
 gi|9656525|gb|AAF95132.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121546819|gb|EAX56983.1| ribonuclease D [Vibrio cholerae 2740-80]
 gi|126510131|gb|EAZ72725.1| ribonuclease D [Vibrio cholerae NCTC 8457]
 gi|146317399|gb|ABQ21938.1| ribonuclease D [Vibrio cholerae O395]
 gi|227009999|gb|ACP06211.1| ribonuclease D [Vibrio cholerae M66-2]
 gi|227013881|gb|ACP10091.1| ribonuclease D [Vibrio cholerae O395]
 gi|229343663|gb|EEO08638.1| ribonuclease D [Vibrio cholerae RC9]
 gi|229351803|gb|EEO16744.1| ribonuclease D [Vibrio cholerae B33]
 gi|229355432|gb|EEO20353.1| ribonuclease D [Vibrio cholerae BX 330286]
 gi|229370127|gb|ACQ60550.1| ribonuclease D [Vibrio cholerae MJ-1236]
 gi|254844775|gb|EET23189.1| ribonuclease D [Vibrio cholerae MO10]
 gi|297542317|gb|EFH78367.1| ribonuclease D [Vibrio cholerae MAK 757]
          Length = 381

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 55  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 111

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 112 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 155

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 156 QLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQESE 192


>gi|258541225|ref|YP_003186658.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256632303|dbj|BAH98278.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
 gi|256635360|dbj|BAI01329.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
 gi|256638415|dbj|BAI04377.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
 gi|256641469|dbj|BAI07424.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
 gi|256644524|dbj|BAI10472.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
 gi|256647579|dbj|BAI13520.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
 gi|256650632|dbj|BAI16566.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653623|dbj|BAI19550.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
          Length = 402

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 67/241 (27%), Gaps = 35/241 (14%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVELWDCVHDPVMPQVLKEALENTDVT 67
           E+   +D        Y     + L      +D  V L D + D +    LK    +T V 
Sbjct: 31  ESFVTVDTEFMREQTYW--PELCLVQIGATND--VVLIDALADGIDLTPLKNLFVDTAVL 86

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEAL-KLSSQKME 124
            V H +  +  +    F  D        T V A   G        ++  +L      K  
Sbjct: 87  KVFHAARQDLEIFLHLF--DALPTPLFDTQVAAMVAGFGDQVGYDSLVGSLTGHMIDKSH 144

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
              +   R                           Y  GDVT  R +++RL     +EQ 
Sbjct: 145 RFTDWSVRPLSPAQLT-------------------YAAGDVTWLRLVYERLVKKLEQEQR 185

Query: 185 LWYL---DQTINDR-GYCVDVAL-AHTLNQI-VDVERTKLDQELESLTYGLVSSSRCLEK 238
           L ++      + D   +  D       L     +     + + + +L            +
Sbjct: 186 LDWVAAEMAELEDPATFRPDPEKQWERLRARTNNRRMLAVLRAIAALREREAQRVNVPRQ 245

Query: 239 L 239
            
Sbjct: 246 R 246


>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
 gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus warneri L37603]
          Length = 1438

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 483 DAPEIEDVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 541 INTDYGKHGLNFLAKKYGVD 560


>gi|228473352|ref|ZP_04058106.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
 gi|228275254|gb|EEK14052.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
          Length = 164

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 26/143 (18%)

Query: 1   MAT-LFIDFETRSPIDLTKCGIC-KYAEDVCVILFAFG-FDDHPVEL------------W 45
           M T + +DFET +    + C I   + E+  ++   +      P               +
Sbjct: 1   MNTFVALDFETANQYRSSVCSIGLVFVENNEIVDTYYQLIKPAPNYYSPFCTQVHGLSQY 60

Query: 46  DCVHDPVMPQVLKEALENTDVT---IVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
           D    P+ P+V KE L    +    +VAHNS F+   L+   A + L    + + CTL  
Sbjct: 61  DTEKAPLFPEVWKEIL--PKIKDLPLVAHNSMFDEGCLREVLAYYALPQHTNPFFCTLRA 118

Query: 100 ARSNGL---PSALKAVGEALKLS 119
           AR +        L  V       
Sbjct: 119 ARKSLPQLVNHKLDTVSAYFGFD 141


>gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
           Marseille]
 gi|151280128|gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
           Marseille]
          Length = 235

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 36/151 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET            +  E  CV L                       A    
Sbjct: 1   MRQIVLDTETTGLNP---RSGDRIIEIGCVELVNRRLTGNNFHHYINPERDSEEGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK------ACFNLDIPIH 91
               E   D      +    ++ +   DV I  HN+ F+   L          +    + 
Sbjct: 58  GLTTEFLSDKPKFAEIAAEFRDYISGADVII--HNAPFDIGFLDAELKRVNTPSFKEHVG 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSS 120
             I TLV A+        +L A+ +   +S+
Sbjct: 116 EVIDTLVQAKEMHPGKRNSLDALCDRYGISN 146


>gi|167647058|ref|YP_001684721.1| exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
 gi|167349488|gb|ABZ72223.1| Exonuclease RNase T and DNA polymerase III [Caulobacter sp. K31]
          Length = 201

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 1   MATLFIDFET-----RSPIDL----TKCGICKYAEDVCVILFAFGFDDH--------PVE 43
           M  + IDFET      SP  +     + G     E   +      F           P +
Sbjct: 1   MPVVAIDFETANEQRSSPCAIGLAWIENGRITEVEHHYIRPIDMRFSGWNIAVHGIRPAD 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICT 96
           + D    P +   L+  +E   V  +AHN+ F+ +V++     + L  P   +ICT
Sbjct: 61  VEDADAFPDVLGRLQARIERATV--IAHNAAFDISVMRRTCELYGLPFPCFDYICT 114


>gi|86150923|ref|ZP_01069139.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88596814|ref|ZP_01100051.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562746|ref|YP_002344525.1| hypothetical protein Cj1132c [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315124608|ref|YP_004066612.1| hypothetical protein ICDCCJ07001_1089 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85842093|gb|EAQ59339.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88191655|gb|EAQ95627.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360452|emb|CAL35249.1| conserved hypothetical protein Cj1132c [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315018330|gb|ADT66423.1| hypothetical protein ICDCCJ07001_1089 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 264

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 46/201 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 79  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 138

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 139 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 188

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL----DQTINDRG 196
                    +        EYC+ DV  T  +F + E + +   E  Y+            
Sbjct: 189 --------FYENKLEKIHEYCESDVLNTYMLFLKYELIKANVDEEDYVGFLSYMRDFLCA 240

Query: 197 YCVDVALAHTLNQIVDVERTK 217
              D +      +  + E +K
Sbjct: 241 KKSDRSYTEVFAKACESEISK 261


>gi|262404337|ref|ZP_06080892.1| ribonuclease D [Vibrio sp. RC586]
 gi|262349369|gb|EEY98507.1| ribonuclease D [Vibrio sp. RC586]
          Length = 381

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 55  FDGENLSLIDPTVMDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 111

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 112 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 155

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    +         Q   
Sbjct: 156 QLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQESE 192


>gi|326386170|ref|ZP_08207794.1| DNA polymerase III, epsilon subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209395|gb|EGD60188.1| DNA polymerase III, epsilon subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 230

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 61/234 (26%), Gaps = 42/234 (17%)

Query: 1   MATLFIDFETRSPID-----------------LTKCGI---------CKYAEDVCVILFA 34
           M  +  D ET                      +    +            AE   V   +
Sbjct: 1   MREIVFDTETTGLDPRNGDRLVEIGCVELVNRIATGSVFHCYFNPDRDMPAEAEAVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPI 90
             F        D          L + L +    +VAHN+ F+   L +        ++  
Sbjct: 61  AAFLS------DKPKFSERAAELLDFLGDA--PLVAHNAGFDFGFLNSELTFCGMGEVSR 112

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNK 147
            R + T+ +AR     +  +L A+     +  S + + G  L A        E +  R  
Sbjct: 113 DRMVDTVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVELMGGRQI 172

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
                A          D     ++ +   P       +  L +         D 
Sbjct: 173 GL-ELAADTLTVAVSEDAPTRPQLARPFRPARPHSASVAELARHAEFMAGFADP 225


>gi|323499349|ref|ZP_08104325.1| ribonuclease D [Vibrio sinaloensis DSM 21326]
 gi|323315534|gb|EGA68569.1| ribonuclease D [Vibrio sinaloensis DSM 21326]
          Length = 371

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 48/172 (27%), Gaps = 23/172 (13%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     + L++T V  V H    +  V    F      +  + T
Sbjct: 47  FDGEHLSLIDPTELEDMTA-FVQLLQDTSVLKVLHACGEDLEVFHNSFG--CLPYPMVDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                    L     K E+      R   + +     
Sbjct: 104 QLMAAFLGHGLSTGFAALV----------DHYLQVELDKSESRTDWLARPLTDKQLD--- 150

Query: 157 FGEYCKGDVTVTREIFKRLE----PLSSKEQELWYLDQTINDRGYCVDVALA 204
              Y   DV     ++++L          E      D   + R   VD  LA
Sbjct: 151 ---YAAADVFYLWPLYEKLLAAVTEAGWWEAAQQESDLLASKRIKNVDPELA 199


>gi|229472449|gb|ACQ72739.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472451|gb|ACQ72740.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472479|gb|ACQ72754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 12/142 (8%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++     +      
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYANILLNDDIHQVNADKI----- 66

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQK-MASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                  R   K +  A  Y            S    +           +  +     E 
Sbjct: 67  ----GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQ 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               +++   E        G  
Sbjct: 123 LVEAVKKKAKEAGSIRSIDGRK 144


>gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
 gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
          Length = 1367

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 39/146 (26%)

Query: 4   LFIDFETRSPID------------------------LTKCGICKYAEDVCVILFAFGFDD 39
           +  DFET                             L K       +   +        +
Sbjct: 361 VVFDFETTGLDPQVDEIIEIGAVKIKEGRIIDEYHTLIKPSGTISRKSAEITGITQEMLE 420

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWIC 95
               +        +     E LE++   +VAHN+ F+   L    K     D     ++ 
Sbjct: 421 GERAI------EEVLPEFLEFLEDS--ILVAHNANFDYRFLRLWIKKVLGKDWE-KPYVD 471

Query: 96  TLVLAR-SNGL-PSALKAVGEALKLS 119
           TL LA+    L   +L +V + L L 
Sbjct: 472 TLALAKSLLRLKSYSLDSVVKKLGLG 497


>gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria
           pomeroyi DSS-3]
 gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria
           pomeroyi DSS-3]
          Length = 470

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 34/149 (22%), Gaps = 49/149 (32%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA----- 60
            D ET   +               ++            +        +    +       
Sbjct: 281 FDTETTGLLP----------HKDEIVQIG-AVRVVKGRIVPGERIDQLVDPGRPIPPAST 329

Query: 61  -------------------------LENTDVTIVAHNSYFERTVLKACF---NLDIPIHR 92
                                         V  VAHN+ F+   L+       LD   H 
Sbjct: 330 RVHGVSDAMVAGAPDIVAAARQFHQFARDAVI-VAHNAPFDIAFLRRHGPRCGLDWD-HP 387

Query: 93  WICTLVLARSN---GLPSALKAVGEALKL 118
            + T++L+           L A+ + L +
Sbjct: 388 ILDTVLLSAVLFGASETHTLDALCDRLGV 416


>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
           H19]
          Length = 1438

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|49475730|ref|YP_033771.1| ribonuclease D [Bartonella henselae str. Houston-1]
 gi|49238537|emb|CAF27773.1| Ribonuclease D [Bartonella henselae str. Houston-1]
          Length = 406

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 53/201 (26%), Gaps = 28/201 (13%)

Query: 1   MATLF--IDFE----TRSPIDLTKCGICKYAE---DVCVILFAFGFDDHPVELWDCVHDP 51
           M  +    D E    T    D          E      + L           L D +   
Sbjct: 24  MKLITQTTDLEIALATLRNSDFVTIDTEFIRETTFWPQLCLIQLA-SPDTTVLIDPISQD 82

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           +  +   + + N  +  V H +  +   +       IP      T +     G   +   
Sbjct: 83  IDLKPFFDLMVNKKIVKVFHAARQDIETI-YHLGGVIP-SPLFDTQIAGSICGFGDS--- 137

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                           +++ R    +  +     +      +      Y   DVT  R++
Sbjct: 138 ------------ISYDQIVQRCTGYQLDKSSRFTDWSFRPLS-EKQLLYALADVTYLRDV 184

Query: 172 FKRLEPLSSKEQELWYLDQTI 192
           +  L+    K +   ++D  I
Sbjct: 185 YLLLKKQLEKNKRTHWMDDEI 205


>gi|85708161|ref|ZP_01039227.1| ribonuclease D [Erythrobacter sp. NAP1]
 gi|85689695|gb|EAQ29698.1| ribonuclease D [Erythrobacter sp. NAP1]
          Length = 400

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 57/196 (29%), Gaps = 40/196 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L     +       D + D +    L 
Sbjct: 26  VAVDTEFMRENTYW---------------PELCLVQIA-NTEEAAAIDPLADGIDLSPLL 69

Query: 59  EAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           E L EN +V  V H    +  ++               T +         ++ A+ ++ +
Sbjct: 70  ELLTENDEVLKVFHAGGQDVEIIVNMTGKT--PFPIFDTQI---------SMMAISQSEQ 118

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +    + +   L     KG        R             EY  GDVT   +IF ++  
Sbjct: 119 IGYANLVD-HWLNITVDKGARFTDWSRRPLT------DRQIEYAIGDVTHLSKIFPKILK 171

Query: 178 LSSKEQELWYLDQTIN 193
              K +   +LD  + 
Sbjct: 172 KLMKTERGAWLDAEME 187


>gi|251788641|ref|YP_003003362.1| DNA polymerase III subunit epsilon [Dickeya zeae Ech1591]
 gi|247537262|gb|ACT05883.1| DNA polymerase III, epsilon subunit [Dickeya zeae Ech1591]
          Length = 244

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 48/167 (28%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHKIIEIG-AVEVVNRRLTGRHFHVYLRPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-----LKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPI 90
                  + D  +        + +   +      +V HN+ F+   +         DIP 
Sbjct: 61  EAYNIHGISDEFLVDKPTYADVADDFLDFIRGAELVIHNASFDIGFMDYEFRLLGRDIPK 120

Query: 91  HRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
               CT    L++AR         L A+ +  ++ + K      L+ 
Sbjct: 121 TETFCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLD 167


>gi|229496277|ref|ZP_04389997.1| 3'-5' exonuclease domain protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316855|gb|EEN82768.1| 3'-5' exonuclease domain protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 213

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 47/189 (24%), Gaps = 33/189 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            +  D E          G     E   V L           L         P  LK  L 
Sbjct: 47  VVGFDTE---SKPCFTRG-----ETAEVALIQISTL-EDAYLIRVNKTDFTP-RLKAFLA 96

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N ++  V  +   +  V++     ++    +I              L+++  A  +    
Sbjct: 97  NPNILKVGLSLRDDYKVMRRRA--EVQPEGFI-------------ELQSLCPAYGIRDAG 141

Query: 123 MEEGKELI--ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           ++    +I   R  K +             ++       Y   D      I+  L     
Sbjct: 142 LQNIYAIIFGERISKSQRVTNWESPTLSFKQQ------LYAALDAYACLRIYNALMERPI 195

Query: 181 KEQELWYLD 189
                + L 
Sbjct: 196 PHPSRFALL 204


>gi|85702967|ref|ZP_01034071.1| ribonuclease D [Roseovarius sp. 217]
 gi|85671895|gb|EAQ26752.1| ribonuclease D [Roseovarius sp. 217]
          Length = 386

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 48/186 (25%), Gaps = 42/186 (22%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVM- 53
            + +D E     T                   + L         D    L D +    M 
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLLQLAVPGKGDDSAVLVDPIEGEDMS 66

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + L E   +T V  V H +  +  +     +  +       T V A   G        G
Sbjct: 67  MEPLYELFRDTSVVKVFHAARQDLEIF--YVDAGVIPDPMFDTQVAAMVCGF-------G 117

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
           E +          + L+ R  K    +     +             Y   DVT  R +++
Sbjct: 118 EQVGY--------ETLVKRIAKQTVDKSSRFTDWSRRPLTDAQ-KTYALADVTHLRVVYE 168

Query: 174 RLEPLS 179
            L    
Sbjct: 169 FLAKKL 174


>gi|332967672|gb|EGK06783.1| DNA-directed DNA polymerase III epsilon subunit [Kingella kingae
           ATCC 23330]
          Length = 252

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 30/233 (12%)

Query: 1   MATLFIDFETRS---------PIDLTKCGICKYAEDV-------------CVILFAFGFD 38
           +  + +D ET              +   G+                     +   A    
Sbjct: 6   IRQIILDTETTGFEHSAAENPDRMIEFAGLEMVNRQFTKNNLHLYIHPQRDINPDAIAVH 65

Query: 39  DHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL-KACFNLDIPIHR---- 92
              +E  +  + PV  +V ++  +      ++ HN+ F+   L      + +P  +    
Sbjct: 66  GITLEKLESENAPVFAEVAQQIFDFIKGAELIIHNAKFDVGFLDAEFARVGLPKVKTICT 125

Query: 93  WICTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            + TL +A  R  G  ++L A+   L +   +      LI     GE +  +        
Sbjct: 126 VVDTLEMARDRYPGQKNSLDALCNRLDVDRSRRVLHGALIDCELLGEVYLAMTRGQFSLD 185

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVAL 203
                   E     V  T             +           +    +D A+
Sbjct: 186 AAFASDVAESSASPVIATTATLLPRPEYLKVQAASPEELAEHEEYLNQLDKAV 238


>gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1435

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 479 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 536

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 537 RTINTEYGKHGLNFLAKKYGVE 558


>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
 gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis SK119]
          Length = 1438

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|163792851|ref|ZP_02186827.1| Ribonuclease D [alpha proteobacterium BAL199]
 gi|159181497|gb|EDP66009.1| Ribonuclease D [alpha proteobacterium BAL199]
          Length = 386

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 50/206 (24%), Gaps = 42/206 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             + +D E     T                   + L             D +   +    
Sbjct: 21  RYVAVDTEFMRDKTYY---------------AKLCLVQLA-GADEAVAVDTLAPGIDLAP 64

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L   + N DV  V H +  +  +       D        T + A   G   A+       
Sbjct: 65  LYALMANPDVLKVFHAARQDVEIFVHQA--DAVPAPLFDTQIAAMVCGFGDAVSYDRLVR 122

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            L+  K+++         +  +                    EY   DV   R  +++L 
Sbjct: 123 GLTGVKLDKTSRFTDWSHRPLSS----------------RQIEYALADVIHLRPAYEKLH 166

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVA 202
                  +   L+    +     D A
Sbjct: 167 RKLE---KTGRLEWLSEEMAVLTDTA 189


>gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2]
 gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2]
          Length = 1459

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 43/142 (30%), Gaps = 28/142 (19%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED---VCVILF----AFGFDDHPVELWDCVH-- 49
            +  D ET         + + G     +D     V  F             EL       
Sbjct: 425 YVSFDIETTGLSPKFHEIIEFGAVDINQDLKVGEVTQFFIKPQAKIGAFTTELTGITQQM 484

Query: 50  ----DPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
                  +   L+      +  V  +AHN+ F+   LK      N+  P    I TL+ +
Sbjct: 485 LDSEGLSIKDGLQRIYDCLDGKVA-IAHNAKFDFNFLKEQFRLNNVPFPNVTVIDTLIAS 543

Query: 101 RSNGLP----SALKAVGEALKL 118
           R  G P      L+ V   L +
Sbjct: 544 R-IGFPNYKRHKLEDVTSRLGV 564


>gi|254226821|ref|ZP_04920393.1| ribonuclease D [Vibrio cholerae V51]
 gi|125620668|gb|EAZ49030.1| ribonuclease D [Vibrio cholerae V51]
          Length = 381

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 55  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 111

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 112 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 155

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 156 QLEYAAADVFYLLPMYEKLLERVTQAGWWEAALQESE 192


>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus hominis subsp. hominis C80]
          Length = 1438

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 481 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEYGKHGLNFLAKKYGVE 560


>gi|262212381|gb|ACY35807.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 65/269 (24%), Gaps = 96/269 (35%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A+ G+ +V ADL+GIE R+L+                       A    +     
Sbjct: 13  RRLFMATPGQVMVGADLSGIELRMLSHYLARYDTYFGDNLLNGDIHQLNADKIGI----- 67

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G +       +    L+                        
Sbjct: 68  ---TRKLVKTVTYAFLYGAGNEKI---GYSYDRLLSPQKAKA------------------ 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                +K+A+ +    +S+L + +  A                 
Sbjct: 104 -----------------KGREIKEAFIEAIPGLSDLLSAVKSAA---------------- 130

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                      N   +    GR ++                          K    ++Q 
Sbjct: 131 -----------NRGFVKGIDGRKILVDSPH---------------------KAPNYLLQG 158

Query: 605 VSRDILAEGMMNATKAG--YDIVLTVHDE 631
            +  +    M+ A         +  +HDE
Sbjct: 159 SAGVVAKRWMVIANDNPFCCSQLAFIHDE 187


>gi|239908264|ref|YP_002955005.1| hypothetical protein DMR_36280 [Desulfovibrio magneticus RS-1]
 gi|239798130|dbj|BAH77119.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 1507

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/396 (9%), Positives = 90/396 (22%), Gaps = 106/396 (26%)

Query: 279  NRMRASRSAVLKL------NTLVEAMNSDGRLRGTLQFLGASRTGRWS-GCVFPPQNLPR 331
             + +       K+       + +  +N+           G       +        N  R
Sbjct: 1167 YQKQMDLLKTKKICYIYQMESEILLLNNKYLKSNGFSVNGEKLDQMKAIASTANNSNDER 1226

Query: 332  PSRSHEELDQIITHLPTSITSDPDPLQIISDCV--------RSCVIASEGKKLVVADLAG 383
               + E+L Q     P+ I             +        R   + SEG  ++  D+  
Sbjct: 1227 TLETIEKLVQKDEKFPSIINQIETTTGRSGYRILSTLNKKFRLLFLPSEGHVILAFDMKH 1286

Query: 384  IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
             E  +++ ++ + + L    +G+D+Y             +   D+     +  +A+   G
Sbjct: 1287 FEPTIISSLSNDTYALGLINSGKDIYTEVAMSISGALNEERFNDRSFGKVLFNIAIN-GG 1345

Query: 444  GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
               A                                            +    +   +  
Sbjct: 1346 NEHALVS---------------------------------------RCYETNVIITRSCS 1366

Query: 504  ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
              +   +R     + +  N +        +                              
Sbjct: 1367 AEIFNNFRNMFPVIFQFQNRILHMARTYGKMY--------------------------TK 1400

Query: 564  SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNA----TK 619
              R L   D   + +                  +   +VQ    D     ++        
Sbjct: 1401 FSRVLYVDDNVKDST------------------IVNFVVQGSGADAFKRLLLKVNDFLNH 1442

Query: 620  AGYDIVLTVH-DEIVCETPD-TDEFNASMLYHLMTS 653
               DI+   H D +  + P+         L  ++  
Sbjct: 1443 PEEDILFH-HFDALYIQVPEHGAAKRMEALREIIED 1477


>gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 735

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 43/144 (29%), Gaps = 36/144 (25%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILF-AFGFDDH--------------------PVELW--- 45
           T +  D    G+   A D  +I   A    +                             
Sbjct: 544 TYTVFDTETTGMEPAAGD-EIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRIHGI 602

Query: 46  --DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLV 98
             D V      +V+  AL +   D  +VAHN+ F+   L   +    +       + TL+
Sbjct: 603 SDDMVRGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFS-QPVLDTLL 661

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           L+           L ++ E L + 
Sbjct: 662 LSGVLHPNQESHQLDSIAERLGIG 685


>gi|153217090|ref|ZP_01950854.1| ribonuclease D [Vibrio cholerae 1587]
 gi|124113892|gb|EAY32712.1| ribonuclease D [Vibrio cholerae 1587]
          Length = 381

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 55  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 111

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 112 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 155

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 156 QLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQESE 192


>gi|163752438|ref|ZP_02159629.1| ribonuclease D [Shewanella benthica KT99]
 gi|161327662|gb|EDP98855.1| ribonuclease D [Shewanella benthica KT99]
          Length = 380

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 47/168 (27%), Gaps = 20/168 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L    +D   + L D V    +       L    +T V H+   +  V     N  
Sbjct: 48  ARLGLIQ-AYDGKTLALIDPVAVNNL-SEFWGLLAEPGITTVLHSCSEDLEVFAR--NGH 103

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                   + + A   GL   L            K+ E   L     KGE+      R  
Sbjct: 104 CQPANLFDSQIAAALCGLGHGL---------GYAKLVEQ-TLDISLDKGESRTDWMKRPL 153

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
              +        Y   DV     ++ +L     ++  L ++ +     
Sbjct: 154 SEAQ------LNYAANDVYYLYNLYPQLLEKLQQQGRLAWVIEEGERM 195


>gi|89267461|emb|CAJ83573.1| Werner syndrome homolog (human) [Xenopus (Silurana) tropicalis]
          Length = 1171

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 54/183 (29%), Gaps = 35/183 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D E      +   G     +   V L      +    L+        P+ L+  L
Sbjct: 71  DVLGFDIE---WPPIYTKG-----KTGKVALIQVCVSEKKCYLFHISPMAGFPKGLRRLL 122

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+  V  V                + I   +W    +++        LK   E  ++++Q
Sbjct: 123 EDESVKKV---------------GVGIEGDQW---KLMS---DYELKLKGFIELSEVANQ 161

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF------GEYCKGDVTVTREIFKRL 175
           K+   ++           +    ++       W +F        Y   D      I+++L
Sbjct: 162 KLRCKEKWSLNGLVKHLFKKQLLKDSSIRCSNWDIFPLSTDQKLYAASDAYAGLLIYQKL 221

Query: 176 EPL 178
           E +
Sbjct: 222 ECM 224


>gi|83313644|ref|YP_423908.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
 gi|82948485|dbj|BAE53349.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           [Magnetospirillum magneticum AMB-1]
          Length = 257

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 43/180 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYA--------EDVCVILFA 34
           M  + +D ET     L+   +                   +Y         E   V   +
Sbjct: 28  MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPERDMPEEAFKVHGLS 87

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTV----LKACFNLDIP 89
             F             P+  +++ + LE   DV +V HN+ F+       L       +P
Sbjct: 88  ADF---------LSDKPLFAEIVADFLEFIGDVPLVIHNAEFDMRFINAELTRLGFPPLP 138

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
           + R I T+++AR       + L A+    ++ +  + + G  L +        + +  R 
Sbjct: 139 MSRSIDTVMMARKRFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLIGGRQ 198


>gi|255075175|ref|XP_002501262.1| predicted protein [Micromonas sp. RCC299]
 gi|226516526|gb|ACO62520.1| predicted protein [Micromonas sp. RCC299]
          Length = 332

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 34/128 (26%), Gaps = 19/128 (14%)

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
           +   L   + +  V  V H +  +   L+  F + +       T   AR   LPS     
Sbjct: 96  IRDALGPVMADPRVMKVFHGADMDVQWLQRDFGIYV--VGMFDTGQAARVLELPSK---- 149

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           G A  L             +  K         R              Y +GD      ++
Sbjct: 150 GLAYLLD-------HYCSVKADKRFQLADWRVRPLS------EEMISYARGDTHHLLYVY 196

Query: 173 KRLEPLSS 180
            RL     
Sbjct: 197 DRLRQQLD 204


>gi|325914917|ref|ZP_08177249.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538810|gb|EGD10474.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 244

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 43/155 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYAE---DVC-----VILFA 34
           M  + +D ET          +                   +Y +   D       V    
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLD 87
             F            D  + +     +      ++ HN+ F+   L          +   
Sbjct: 61  LEFLADK----PLFGD--VVEEFLAYI--DGAELIIHNAAFDLGFLDNELSLLGDGYGRI 112

Query: 88  IPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS 120
           I     + TL++A  R  G  ++L A+ + L + +
Sbjct: 113 IDRATVVDTLMMARERYPGQRNSLDALCKRLGVDN 147


>gi|302674116|ref|XP_003026743.1| hypothetical protein SCHCODRAFT_238450 [Schizophyllum commune H4-8]
 gi|300100427|gb|EFI91840.1| hypothetical protein SCHCODRAFT_238450 [Schizophyllum commune H4-8]
          Length = 297

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 14/172 (8%)

Query: 2   ATLFIDFE-T---RSPIDLTKCG-ICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L  D E T    S + +          +D  + L      D  V  +D +    +P  
Sbjct: 51  RVLAFDVEYTGRKHSDVAIRPMSIPLPRTQDHFIRLLTIA-RDGVVIAFDLLVLAGVPAR 109

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDI----PIHRWICTLVLA---RSNGLPSAL 109
           L E L + ++  V      +  +L   F + +     I +   ++  +          +L
Sbjct: 110 LIEMLRDPNIIKVGVELKGDSILLLRHFAVPVHNGWEISQLWKSMHPSIEVAPLTTHISL 169

Query: 110 KAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
             +    L +   K+++  +  A     E  E  Y            +  EY
Sbjct: 170 DDMARIVLGVKVDKLQQTSDWSAPALSVEQIEYSYLDAYILVPIMHVVLHEY 221


>gi|301619865|ref|XP_002939304.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Xenopus
           (Silurana) tropicalis]
          Length = 1431

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 54/183 (29%), Gaps = 35/183 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D E      +   G     +   V L      +    L+        P+ L+  L
Sbjct: 71  DVLGFDIE---WPPIYTKG-----KTGKVALIQVCVSEKKCYLFHISPMAGFPKGLRRLL 122

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+  V  V                + I   +W    +++        LK   E  ++++Q
Sbjct: 123 EDESVKKV---------------GVGIEGDQW---KLMS---DYELKLKGFIELSEVANQ 161

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF------GEYCKGDVTVTREIFKRL 175
           K+   ++           +    ++       W +F        Y   D      I+++L
Sbjct: 162 KLRCKEKWSLNGLVKHLFKKQLLKDSSIRCSNWDIFPLSTDQKLYAASDAYAGLLIYQKL 221

Query: 176 EPL 178
           E +
Sbjct: 222 ECM 224


>gi|262342271|gb|ACY54646.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 39/141 (27%), Gaps = 8/141 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                 R + K +  A  Y  G K               T        +  +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEVRQAYMDAIPGLQKL 123

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
              ++    ++   +   G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|254286913|ref|ZP_04961865.1| ribonuclease D [Vibrio cholerae AM-19226]
 gi|150423063|gb|EDN15012.1| ribonuclease D [Vibrio cholerae AM-19226]
          Length = 381

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 55  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 111

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 112 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 155

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 156 QLEYAAADVFYLLPMYEKLVERVTQAGWWEAALQESE 192


>gi|153801848|ref|ZP_01956434.1| ribonuclease D [Vibrio cholerae MZO-3]
 gi|153829828|ref|ZP_01982495.1| ribonuclease D [Vibrio cholerae 623-39]
 gi|229515363|ref|ZP_04404823.1| ribonuclease D [Vibrio cholerae TMA 21]
 gi|229528995|ref|ZP_04418385.1| ribonuclease D [Vibrio cholerae 12129(1)]
 gi|124122620|gb|EAY41363.1| ribonuclease D [Vibrio cholerae MZO-3]
 gi|148874687|gb|EDL72822.1| ribonuclease D [Vibrio cholerae 623-39]
 gi|229332769|gb|EEN98255.1| ribonuclease D [Vibrio cholerae 12129(1)]
 gi|229348068|gb|EEO13027.1| ribonuclease D [Vibrio cholerae TMA 21]
          Length = 381

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 55  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 111

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 112 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 155

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 156 QLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQESE 192


>gi|86357133|ref|YP_469025.1| RNase D protein [Rhizobium etli CFN 42]
 gi|86281235|gb|ABC90298.1| RNase D protein [Rhizobium etli CFN 42]
          Length = 381

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 63/240 (26%), Gaps = 34/240 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           + +      + L         V +       +      E +
Sbjct: 19  DFITIDTE----------FLRETTFWPELCLIQMASPTMEVLVDPLAKG-IDLAPFFELM 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +T V  V H +  +  ++    N  +  H    T V A   G      +V     +S  
Sbjct: 68  ADTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFG---DSVSYDQLVSRI 122

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K            K         R             EY   DVT  R+++  L     +
Sbjct: 123 KNVHI-------DKSSRFTDWSRRPLS------EKQLEYALADVTHLRDVYLSLSSQLDR 169

Query: 182 E----QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           E         +D       Y +    A    + + + + +    L+ +       +R   
Sbjct: 170 EGRTSWLREEMDILEARETYDMHPDDAWQRLK-MRLRKPQELAVLKYVAAWREREARARN 228


>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1415

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +             +  I TL L+
Sbjct: 479 LVDAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELS 536

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 537 RTINTEYGKHGLNFLAKKYGVE 558


>gi|294795062|ref|ZP_06760197.1| exonuclease [Veillonella sp. 3_1_44]
 gi|294454424|gb|EFG22798.1| exonuclease [Veillonella sp. 3_1_44]
          Length = 209

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 22/140 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKY-AEDVCVILFAFG--------FDDH--PVELW---DC 47
             + +DFET +    + C +     +D  +   A+         FDD    +      D 
Sbjct: 3   DFVALDFETANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPKDV 62

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
           +H+    ++     EN      +VAHN+ F+  VL+A    + +  P   + CT+ L+R+
Sbjct: 63  LHEKTFDELWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKLSRA 122

Query: 103 NGL---PSALKAVGEALKLS 119
                    L  +   + + 
Sbjct: 123 VWPDLVNHKLNTMAAYIGVE 142


>gi|229472487|gb|ACQ72758.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 12/142 (8%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++     +      
Sbjct: 12  CRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI----- 66

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQK-MASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                  R   K +  A  Y            S    +           +  +     E 
Sbjct: 67  ----GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQ 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               +++   E        G  
Sbjct: 123 LVEAVKKEAKEAGSIRSIDGRK 144


>gi|229521896|ref|ZP_04411313.1| ribonuclease D [Vibrio cholerae TM 11079-80]
 gi|229340821|gb|EEO05826.1| ribonuclease D [Vibrio cholerae TM 11079-80]
          Length = 381

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 55  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 111

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 112 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 155

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 156 QLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQESE 192


>gi|16081956|ref|NP_394366.1| DNA polymerase II [Thermoplasma acidophilum DSM 1728]
 gi|10640184|emb|CAC12036.1| DNA polymerase (PolB), large chain related protein [Thermoplasma
           acidophilum]
          Length = 796

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 60/187 (32%), Gaps = 20/187 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D E     ++ +  +  Y + + VI ++  F    V       +  + +   + +
Sbjct: 157 KVLSFDVE----NEINRENVEDYGKIL-VIGYSVSFQGKTVTGSLSGEEQDILRSFVDLI 211

Query: 62  --ENTDVTIVAHNS-YFERTVLKAC---FNLDIPIHRWICTLV----LARSNGLPSAL-- 109
             E+ DV    +N   ++  V+K     + + + I R     +    + +   +   L  
Sbjct: 212 RAEDPDVI-TGYNIDGYDIPVIKKRMDRYGIKLEIGR--DGSIPRRIMNQFWRVHGRLIS 268

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                  ++   K E    +                 +   ++       YC  D  +T 
Sbjct: 269 DTWWSVKRILHPKHESLDYVANMLLGEGKDNIDRLHIEDEWKKRREEVIAYCIKDADLTL 328

Query: 170 EIFKRLE 176
            IF++L 
Sbjct: 329 RIFEKLM 335


>gi|302652096|ref|XP_003017908.1| hypothetical protein TRV_08074 [Trichophyton verrucosum HKI 0517]
 gi|291181493|gb|EFE37263.1| hypothetical protein TRV_08074 [Trichophyton verrucosum HKI 0517]
          Length = 1137

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 82/330 (24%), Gaps = 75/330 (22%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +          +   +++ V A  G   V AD+   E
Sbjct: 671 PQVIPMGTITRRAVENTWLTASNAK------PNRVGSELKAMVRAPPGYVFVGADVDSEE 724

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   ++        T       R   KV      Y
Sbjct: 725 L-WIASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRNYAKVFNYGRIY 783

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +++            +E +      R + EN       + F+  
Sbjct: 784 GAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRILSENPFLRGGTESFVFN 843

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +                  +       A  RR +        +      
Sbjct: 844 KLEEFAEQERPRTP----------------VLGAGITEALMRRFINKGGFMTSR------ 881

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 882 ------------------------------------INWAIQSSGVDYLHLLIISMDYLI 905

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                   + +TVHDEI     +TD++ A+
Sbjct: 906 RRFNLDARLAITVHDEIRYVVRETDKYKAA 935


>gi|254437617|ref|ZP_05051111.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           307]
 gi|198253063|gb|EDY77377.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           307]
          Length = 242

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 41/159 (25%)

Query: 1   MATLFIDFETR----SPID-LTKCGI-------------CKY--------AEDVCVILFA 34
           M  + +D ET     S  D + + G               +Y        A    +    
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPKRSMPAGAFGIHGIG 60

Query: 35  FGFDDHP-----VELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLD 87
               D P      ++   + D  +   + +A  +   D  +V HN+ F+   L A     
Sbjct: 61  PDLLDPPQTPTAGQVI--LRDKPVFADIAQAFVDFIGDAKLVIHNAAFDMKFLNAELGWV 118

Query: 88  ----IPIHRWICTLVLAR--SNGLPSALKAVGEALKLSS 120
               +P+ + + TL +AR    G P++L A+     + +
Sbjct: 119 NRPLLPMDQSLDTLGIARKKFPGSPASLDALCRRFGIDN 157


>gi|315042021|ref|XP_003170387.1| DNA polymerase gamma [Arthroderma gypseum CBS 118893]
 gi|311345421|gb|EFR04624.1| DNA polymerase gamma [Arthroderma gypseum CBS 118893]
          Length = 1138

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 82/330 (24%), Gaps = 75/330 (22%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +          +   +++ V A  G   V AD+   E
Sbjct: 672 PQVIPMGTITRRAVENTWLTASNAK------PNRVGSELKAMVRAPPGYVFVGADVDSEE 725

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   ++        T       R   KV      Y
Sbjct: 726 L-WIASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRNNAKVFNYGRIY 784

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +++            +E +      R + E+       + F+  
Sbjct: 785 GAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRLLSEDPFLRGGTESFVFN 844

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +                  +       A  RR +        +      
Sbjct: 845 KLEEFAEQERPRTP----------------VLGAGITEALMRRFINKGGFMTSR------ 882

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 883 ------------------------------------INWAIQSSGVDYLHLLIISMDYLI 906

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                   + +TVHDEI     +TD++ A+
Sbjct: 907 RRFNLDARLAITVHDEIRYVVRETDKYKAA 936


>gi|229472485|gb|ACQ72757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 69/279 (24%), Gaps = 105/279 (37%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +                                 
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKI------------------------------- 89

Query: 480 NFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAII 539
                       H+ + L      +R  K  R+ +    +  ++L  A +   E G    
Sbjct: 90  -----------GHSYDKLLSSAKAKRKGKEIREAYIDAIDGLDKLLAAIKTASERG---- 134

Query: 540 ARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTE 599
                               +    GR ++                          K   
Sbjct: 135 -------------------FIKAIDGRKIMVDSPH---------------------KALN 154

Query: 600 NIVQAVSRDILAEGMMNATKAGYD-------IVLTVHDE 631
             +Q  S  +    M+   +            +  VHDE
Sbjct: 155 YCLQGNSAILAKRWMV-INQQNIKDLNLCCSQLAFVHDE 192


>gi|149924378|ref|ZP_01912745.1| 3'-5' exonuclease [Plesiocystis pacifica SIR-1]
 gi|149814766|gb|EDM74338.1| 3'-5' exonuclease [Plesiocystis pacifica SIR-1]
          Length = 352

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 66/243 (27%), Gaps = 76/243 (31%)

Query: 2   ATLFIDFETRSPIDLTKC----------GICKYAEDV-CVIL--------FAFGFDDHP- 41
            TL  D ET   +DL                +Y  D   V+          +    D   
Sbjct: 128 KTLVFDIETVPAVDLETAPESVTKAVHRAADRYDGDTSKVMGLSPFYGKVVSIAVGDGED 187

Query: 42  --------VELWDCVHDPVMPQVLKE-----------ALENTDVTIVAHNS-YFERTVLK 81
                   V       D   P+ ++             L ++   +V+ N   F+   ++
Sbjct: 188 PDGPVTALVVAPPGREDDAYPEWIRPMTEAQLLRSFWHLADSAEVVVSFNGRGFDVPFVQ 247

Query: 82  ACFNLDIPIHRWICTLVLA------------RSNGL------PSALKAVGEALKLSSQKM 123
               +     R     +++            R           ++L  +  +L + S K 
Sbjct: 248 TRSLIHGVPARVD---LMSSPFALRPHLDLYRLLAPNRGNPASASLDVICWSLGIESPKG 304

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           E    L+A                   R    +   Y  GDV  TR +++ L       +
Sbjct: 305 EMDGSLVA---------------PTYARGDIEMIATYNVGDVRATRSVYRHLREHLLPFR 349

Query: 184 ELW 186
           + W
Sbjct: 350 KDW 352


>gi|295677150|ref|YP_003605674.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 244

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 55/198 (27%), Gaps = 38/198 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  L +D ET     L   G  +  E  CV L                       A    
Sbjct: 1   MRQLILDTETTG---LNARGGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E   D      +    ++ ++  D+ I  HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLSDKPKFAEIIDQFRDFIQGADLII--HNAPFDIGFLDAEFALLGLPPVSTHCG 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TL  A+        +L A+ +   +S+        L+      E +  +    +  
Sbjct: 116 EIIDTLAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESL 175

Query: 150 HREAWRLFGEYCKGDVTV 167
             +          GD   
Sbjct: 176 VIDMLGEA--QAGGDTDA 191


>gi|262342283|gb|ACY54652.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 38/141 (26%), Gaps = 8/141 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVMVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                 R + K +  A  Y  G K               T           +     +  
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKIGLSYDPQLSDKAATAKGKEIRQVYMDAIPGLQKL 123

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
              ++    ++   +   G  
Sbjct: 124 VEAVKCKARQYNYINAIDGRR 144


>gi|262342147|gb|ACY54584.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342267|gb|ACY54644.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 64/275 (23%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G   V ADLAGIE R+LA          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVTVGADLAGIELRMLAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|301119505|ref|XP_002907480.1| exosome complex exonuclease RRP6-like protein [Phytophthora
           infestans T30-4]
 gi|262105992|gb|EEY64044.1| exosome complex exonuclease RRP6-like protein [Phytophthora
           infestans T30-4]
          Length = 1465

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 50/180 (27%), Gaps = 34/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y    C++  +   +D    L D +      Q L +  
Sbjct: 266 RVIAVDLE--------HHSYRSYMGLTCLMQISTAQED---FLVDTLALRGKLQTLNQVF 314

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
            + +   V H S  +   L+    L I       T   AR    P  +L  + +    + 
Sbjct: 315 CDPEKVKVLHGSDMDILWLQRDLGLYI--VNLFDTGRAARLLQYPRFSLAYMLKRHCNID 372

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R    +         Y + D      I+ RL+   
Sbjct: 373 ADKQYQLADW-------------RTRPLDKNMVK------YAREDTRYLLFIYDRLKKEL 413


>gi|229472571|gb|ACQ72800.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 185

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 12/142 (8%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            RS  I   G KLV +DLAGIE RV A   G  ++ +       +D++     +      
Sbjct: 6   CRSLFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYANILLNDDIHQVNADKI----- 60

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQK-MASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                  R   K +  A  Y            S    +           +  +     E 
Sbjct: 61  ----GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQ 116

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               +++   E        G  
Sbjct: 117 LVEAVKKKAKEAGSIRSIDGRK 138


>gi|156542538|ref|XP_001599044.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 1138

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 46/180 (25%), Gaps = 24/180 (13%)

Query: 2   ATLFIDFETRSP--IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
             L  D E  +   +DL       +       L      D    L D +       VL E
Sbjct: 642 KILLEDLEKYNEIAVDLEHHSYRSF--QGITCLMQISTKDTD-YLIDTLTLRSELHVLNE 698

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
                 +  V H +  +   L+    L I       T   A+  GLP     +  +    
Sbjct: 699 IFTKPSILKVFHGADSDILWLQRDLGLYI--VNMFDTYQAAKQLGLPF----LSLSY--- 749

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L+   C+   ++     +         L   Y + D      I   L    
Sbjct: 750 ---------LLKTHCEISANKHFQLADWRIRPLPEELMK-YAREDTHYLLYIKDILSNAL 799


>gi|126730109|ref|ZP_01745921.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37]
 gi|126709489|gb|EBA08543.1| DNA polymerase III, epsilon subunit [Sagittula stellata E-37]
          Length = 229

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 48/178 (26%), Gaps = 33/178 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--- 57
           M  + +D ET            +  E   V LF                +  MPQ     
Sbjct: 1   MREIVLDTETTGFEPEQG---DRIVEIGAVELFNH-VPTGETYHQYINPERSMPQEAFAV 56

Query: 58  ----------KEALE---NTDVTIVA------HNSYFERTVLK---ACFNLD-IPIHRWI 94
                     K       +   T +       HN+ F+   L       N   +     I
Sbjct: 57  HGLGDDFLRDKPVFAKIVDEFRTFIGDSKLVIHNAAFDVKFLNAELRWANRPTLAKDCAI 116

Query: 95  CTLVLARSN--GLPSALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPN 149
            TL +AR    G P++L A+     + +      G  L +        E +  +    
Sbjct: 117 DTLDIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLDSEILAEVYLELIGGKQPDF 174


>gi|115387355|ref|XP_001211183.1| DNA polymerase gamma [Aspergillus terreus NIH2624]
 gi|114195267|gb|EAU36967.1| DNA polymerase gamma [Aspergillus terreus NIH2624]
          Length = 1131

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/325 (12%), Positives = 86/325 (26%), Gaps = 63/325 (19%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ + A  G   V AD+   E
Sbjct: 664 PQIIPMGTITRRAVENTWLTASNAKEN------RVGSELKAMIKAPPGYVFVGADVDSQE 717

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD----QRAIGKVMELALGY 441
              +A + G+                  +++        T       R   KV      Y
Sbjct: 718 L-WIASLIGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTAHILGISRNDAKVFNYGRIY 776

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      ++         ++  +E +      R + E        + F+  
Sbjct: 777 GAGVKFAATLLRQFNPSMTERETQEVASNLYKETKGTRTTRRILSEGPFWRGGTESFVFN 836

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +   +                      A  RR +        + N  + 
Sbjct: 837 KLEEFAEQERPRTPTL----------------GAGITEALMRRFINKGSFMTSRINWAIQ 880

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAG 621
                 L           ++   R+               +QA                 
Sbjct: 881 SSGVDYLHL-----LIVAMDYLIRRFN-------------IQA----------------- 905

Query: 622 YDIVLTVHDEIVCETPDTDEFNASM 646
             + +TVHDEI     D D++ A++
Sbjct: 906 -RLAITVHDEIRYLVKDEDKYRAAL 929


>gi|315303836|ref|ZP_07874324.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
 gi|313627797|gb|EFR96442.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           ivanovii FSL F6-596]
          Length = 928

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 44/157 (28%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET            + + D  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETTG---------NQASRDDRIIQFAACFVESGKRLETYATFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVRDAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMNRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQK 122
              + + T+ LAR          L+ + +   L   K
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDK 148


>gi|297579488|ref|ZP_06941416.1| ribonuclease D [Vibrio cholerae RC385]
 gi|297537082|gb|EFH75915.1| ribonuclease D [Vibrio cholerae RC385]
          Length = 381

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 55  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 111

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 112 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 155

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 156 QLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQESE 192


>gi|153826834|ref|ZP_01979501.1| ribonuclease D [Vibrio cholerae MZO-2]
 gi|149739355|gb|EDM53601.1| ribonuclease D [Vibrio cholerae MZO-2]
          Length = 381

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 55  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 111

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 112 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 155

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 156 QLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQESE 192


>gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581]
 gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 1455

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 49/188 (26%), Gaps = 36/188 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA- 60
             +  D ET          +     +   ++   G      + +       +P  + +  
Sbjct: 400 RYVVFDLETTGLSP-----VYNEIIEFGAVVIQDGIQTESHQFF-VKAKEPIPTEITKIT 453

Query: 61  -----LENT-------------DVTI----VAHNSYFERTVLKACFNLDIPI---HRWIC 95
                + +               +      VAHN+ F+   L   F  +  +      I 
Sbjct: 454 NITQEMVDEQGIEATEAFYRISKIIKDSILVAHNAKFDFNFLAELFKKEASMTIDQPIID 513

Query: 96  TLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           TL ++R         +LK V + + L   +    +         +       +       
Sbjct: 514 TLQVSRFLNPSQKSHSLKNVSKLIGLYYDETVAHRADYDAEILSKVWLNFLTQILDQDIT 573

Query: 153 AWRLFGEY 160
             +   EY
Sbjct: 574 DLKKL-EY 580


>gi|262166092|ref|ZP_06033829.1| ribonuclease D [Vibrio mimicus VM223]
 gi|262025808|gb|EEY44476.1| ribonuclease D [Vibrio mimicus VM223]
          Length = 328

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 2   FDGENLSLIDPTVIDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 58

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 59  QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 102

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    +         Q   
Sbjct: 103 QLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQESE 139


>gi|188995460|ref|YP_001929712.1| probable 3'-5' exonuclease [Porphyromonas gingivalis ATCC 33277]
 gi|188595140|dbj|BAG34115.1| probable 3'-5' exonuclease [Porphyromonas gingivalis ATCC 33277]
          Length = 200

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 35/191 (18%)

Query: 2   ATLFIDFETR-SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
            T+  D ETR S +   +  +           F F  +       D      +P+ L++ 
Sbjct: 42  RTIGFDTETRPSFVRGARPSVALMQMSTETDCFLFRLNM-----ID------IPEELQQL 90

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LEN  +  V  +   + TV++    ++ P                   L+ +  A  +  
Sbjct: 91  LENPGILKVGLSLSDDMTVIRRRKPIE-PAGFVE--------------LQRLCPAYGIRD 135

Query: 121 QKMEEGKELI--ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             +++   ++   R  K +       R     ++       Y   D      IF +L  L
Sbjct: 136 ASLQKIYAILFGRRISKSQRLTNWEARTLTAAQQ------SYAALDAWACLRIFNQLMTL 189

Query: 179 SSKEQELWYLD 189
            +     + L 
Sbjct: 190 PTPTPVQFALL 200


>gi|150396023|ref|YP_001326490.1| ribonuclease D [Sinorhizobium medicae WSM419]
 gi|150027538|gb|ABR59655.1| ribonuclease D [Sinorhizobium medicae WSM419]
          Length = 383

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 29/186 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E           + +      + L      D  V +       +        + 
Sbjct: 20  YITIDTE----------FLRETTFWPELCLIQMASPDMAVIVDPMAPG-IDLASFFALMG 68

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N DV  V H +  +  ++      ++  H    T V A   G      +V     +S  K
Sbjct: 69  NADVVKVFHAARQDIEII-HHLG-NLIPHPLFDTQVAAMVCGFG---DSVSYDQLVSRIK 123

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
            E+         K         R   + +        Y   DVT  R+I+  L     +E
Sbjct: 124 NEQI-------DKSSRFTDWSRRPLTDKQLD------YALADVTHLRDIYHYLVQELERE 170

Query: 183 QELWYL 188
               +L
Sbjct: 171 GRSSWL 176


>gi|34540197|ref|NP_904676.1| 3'-5' exonuclease domain-containing protein [Porphyromonas
           gingivalis W83]
 gi|34396509|gb|AAQ65575.1| 3'-5' exonuclease domain protein [Porphyromonas gingivalis W83]
          Length = 188

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 35/191 (18%)

Query: 2   ATLFIDFETR-SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
            T+  D ETR S +   +  +           F F  +       D      +P+ L++ 
Sbjct: 30  RTIGFDTETRPSFVRGARPSVALMQMSTETDCFLFRLNM-----ID------IPEELQQL 78

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           LEN  +  V  +   + TV++    ++ P                   L+ +  A  +  
Sbjct: 79  LENPGILKVGLSLSDDMTVIRRRKPIE-PAGFVE--------------LQRLCPAYGIRD 123

Query: 121 QKMEEGKELI--ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             +++   ++   R  K +       R     ++       Y   D      IF +L  L
Sbjct: 124 ASLQKIYAILFGRRISKSQRLTNWEARTLTAAQQ------SYAALDAWACLRIFNQLMTL 177

Query: 179 SSKEQELWYLD 189
            +     + L 
Sbjct: 178 PTPTPVQFALL 188


>gi|255745267|ref|ZP_05419216.1| ribonuclease D [Vibrio cholera CIRS 101]
 gi|262155992|ref|ZP_06029112.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
 gi|255737097|gb|EET92493.1| ribonuclease D [Vibrio cholera CIRS 101]
 gi|262030170|gb|EEY48814.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
          Length = 373

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 47  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 104 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 147

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 148 QLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQESE 184


>gi|16124261|ref|NP_418825.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|221232944|ref|YP_002515380.1| DNA polymerase III subunit epsilon [Caulobacter crescentus NA1000]
 gi|13421091|gb|AAK21993.1| DNA polymerase III, epsilon subunit [Caulobacter crescentus CB15]
 gi|220962116|gb|ACL93472.1| DNA polymerase III, epsilon chain [Caulobacter crescentus NA1000]
          Length = 237

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 40/162 (24%)

Query: 2   ATLFIDFETRSPID-----LTKCGI---------------------CKYAEDVCVILFAF 35
             + +D ET          L + G                         AE   V   + 
Sbjct: 3   REIILDTETTGFDPKTGDRLVEIGCIEVVDFMPTGRSFHEYCDPLRDMPAEAEKVHGLSS 62

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIH 91
            F               +     + + ++   +VAHN+ F+R      L+ C    I   
Sbjct: 63  AFLTGK------PKFHEIADRFLDFVGDS--VVVAHNAAFDRQFVNFELEKCGKAPIHEE 114

Query: 92  RWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           RW+ TL +A  R  G+ ++L A+ +  K+S +  ++   LI 
Sbjct: 115 RWVDTLAMAKKRFPGMYNSLDALCKRFKISLESRDKHGALID 156


>gi|90424784|ref|YP_533154.1| exonuclease [Rhodopseudomonas palustris BisB18]
 gi|90106798|gb|ABD88835.1| Exonuclease [Rhodopseudomonas palustris BisB18]
          Length = 314

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LF---AFGFDDHPVELWDCVHDP 51
           M+ L IDFET +    + C +   + E   ++     L       F     ++       
Sbjct: 1   MSILAIDFETANEKRSSPCALGLAWIERGQIVRREYRLIKPKEMRFGVFEAKVHGLSPSE 60

Query: 52  -----VMPQVLKEALEN-TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTL-VLAR 101
                  P+V+ E L +     ++AHN+ F+  VL    A + + IP   ++C+  V +R
Sbjct: 61  VKDAQEFPEVISEFLSDIQSGLLLAHNAQFDVDVLCATLALYGIAIPRFSFLCSQRVASR 120

Query: 102 SNGLPSALK--AVGEALKLS 119
                 +LK  A+GE L +S
Sbjct: 121 VWSDEKSLKLSALGEKLGIS 140


>gi|218780285|ref|YP_002431603.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761669|gb|ACL04135.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1002

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 27/176 (15%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
           +D ETR            Y      +  +  +D    +  +   D      L + L   D
Sbjct: 832 LDIETRRSAAEVGGWGAAYRMG---VSCSVLYDSRDDKFHEYFQDDT--DALAQHLTQLD 886

Query: 66  VTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVL-AR-SNGLPSALKAVGEALKLSSQK 122
             +V  N   F+  VL A    D      +  ++       G   +L  + +   L +QK
Sbjct: 887 -LVVGFNIIRFDYQVLSAHTAFDFSAIPTLD-MLQKIYGVLGYRISLDKLAQ-HTLGTQK 943

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             +G + +                    +       +YC+ DV +TR++F      
Sbjct: 944 TADGLQALKW----------------WKQGKIDKILKYCRADVAITRDLFLYGREH 983


>gi|114775667|ref|ZP_01451235.1| ribonuclease D [Mariprofundus ferrooxydans PV-1]
 gi|114553778|gb|EAU56159.1| ribonuclease D [Mariprofundus ferrooxydans PV-1]
          Length = 398

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 58/192 (30%), Gaps = 42/192 (21%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            L +D E     T  P             +  ++     + +    + D +    +   +
Sbjct: 27  VLCVDTEFHRESTFYP-------------EFALLQI---YGNGQCWVIDPITIKDL-APV 69

Query: 58  KEALENTDVTIVAHNSYFER-TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            + + N  +  V H +  +   +      L +P+     T V A   G        G+ +
Sbjct: 70  WDIMLNPAILKVFHAARQDIEIIFNEAGGLPLPL---FDTQVAAALLGY-------GQQV 119

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              +      K+L+    KGE+      R         +    Y   DV     +F+ L+
Sbjct: 120 GFGNLVQRITKKLLP---KGESFTDWKARPLT------KKQMAYAADDVIWLMPVFQHLK 170

Query: 177 PLSSKEQELWYL 188
                 +   +L
Sbjct: 171 ERLEAAKRTQWL 182


>gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 244

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 43/155 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYAE---DVC-----VILFA 34
           M  + +D ET          +                   +Y +   D       V    
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLD 87
             F            D  + +     +      ++ HN+ F+   L          +   
Sbjct: 61  LEFLADK----PLFAD--VVEEFLAYI--DGAELIIHNAAFDLGFLDNELSLLGDNYGRI 112

Query: 88  IPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS 120
           +     + TL++A  R  G  ++L A+ + L + +
Sbjct: 113 VERATVVDTLMMARERYPGQRNSLDALCKRLGVDN 147


>gi|307718875|ref|YP_003874407.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
 gi|306532600|gb|ADN02134.1| hypothetical protein STHERM_c11930 [Spirochaeta thermophila DSM
           6192]
          Length = 198

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 46/150 (30%), Gaps = 40/150 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW----------------- 45
            +  D ET     +    +                   P   +                 
Sbjct: 21  VVTFDLETTGLDPVRHSVVEIACVKFQ--------GGEPRAFFSLLVKPPHPIPAEVTKI 72

Query: 46  ------DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWI 94
                 D    P +P VL   LE+      +VAHN+ F+ + L+  +       P  R I
Sbjct: 73  HGIGDQDVEEAPPLPSVL-PMLESFVGTHLLVAHNAPFDLSFLRMEYARCGRPYPGFRAI 131

Query: 95  CTLVLARSNGLP---SALKAVGEALKLSSQ 121
            T +LARS        +L ++  AL +  Q
Sbjct: 132 DTRLLARSVLPHLGRYSLASLTRALDIPLQ 161


>gi|241894744|ref|ZP_04782040.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
           ATCC 33313]
 gi|241871956|gb|EER75707.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
           ATCC 33313]
          Length = 177

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 23/141 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LF---AFGFDDHPVELW-----D 46
           M  + +DFET S    +   +      D  ++     L    +F FD     +      D
Sbjct: 1   MNFIAMDFETASAKRYSAVSLGLAVVRDNKLVDEFYTLIKPDSF-FDKRNTRIHGITEAD 59

Query: 47  CVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
             + P+ P+V ++       +  ++AHN+ F+  VL+     +++D+P +  + T+  +R
Sbjct: 60  VRNAPIFPEVWEQIQQFYTPNQLVIAHNAPFDNGVLRETLTHYDIDLPHYLSLDTVRTSR 119

Query: 102 SNG---LPSALKAVGEALKLS 119
                     L  V  AL + 
Sbjct: 120 KLYPELPNHKLNTVAAALGID 140


>gi|121729927|ref|ZP_01682350.1| ribonuclease D [Vibrio cholerae V52]
 gi|121628334|gb|EAX60840.1| ribonuclease D [Vibrio cholerae V52]
          Length = 350

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 47  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 104 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 147

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 148 QLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQESE 184


>gi|283785541|ref|YP_003365406.1| ribonuclease D [Citrobacter rodentium ICC168]
 gi|282948995|emb|CBG88598.1| ribonuclease D [Citrobacter rodentium ICC168]
          Length = 377

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D  H       LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGERVALID-PHGISDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDTAITKYLHAGSEDLEVFLNAFG-ELP-QPLIDTQILAAFCGRPLSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  T                    EY   DV     I  +L   
Sbjct: 126 TGVALDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPIAGKLMAE 169

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 170 TEAAGWLPAALDECRLMQQR 189


>gi|239613015|gb|EEQ90002.1| DNA polymerase gamma [Ajellomyces dermatitidis ER-3]
 gi|327356950|gb|EGE85807.1| DNA polymerase gamma [Ajellomyces dermatitidis ATCC 18188]
          Length = 1146

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/368 (11%), Positives = 93/368 (25%), Gaps = 76/368 (20%)

Query: 298 MNSDGRLRGTL--QFLGASRTGRWSGCVFPPQN---LPRPSRSHEELDQIITHLPTSITS 352
           +++  R+R  L        R    S      +    LP+         + + +   + ++
Sbjct: 634 ISARDRIRSQLVVYHNDVERLKNKSISNPSFKQGYILPQIIPMGTITRRAVENTWLTASN 693

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                  +   +++ V A  G   V AD+   E   +A + G+                 
Sbjct: 694 AKANR--VGSELKAMVTAPPGYVFVGADVDSEEL-WIASLVGDAQFQIHGGNAIGFMTLE 750

Query: 413 YARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             ++        T       R   KV      Y  G K    +      +++        
Sbjct: 751 GTKAAGTDLHSKTAKILGISRNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEHETKQVA 810

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               +E +      + + +N       + F+    E   +  R +               
Sbjct: 811 AKLYKETKGVRTNRKILSDNPFWRGGTESFVFNKLEEFAEQERPRTP------------- 857

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
              +       A  RR +        +                                 
Sbjct: 858 ---VLGAGITEALMRRFINKGSFMTSR--------------------------------- 881

Query: 589 REYTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEF 642
                        +Q+   D   +L   M   +        + +TVHDEI     + D++
Sbjct: 882 ---------INWAIQSSGVDYLHLLIISMDFLIRRFNLDARLAITVHDEIRYLVKEHDKY 932

Query: 643 NASMLYHL 650
            A+M   +
Sbjct: 933 RAAMALQI 940


>gi|86136750|ref|ZP_01055328.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193]
 gi|85826074|gb|EAQ46271.1| DNA polymerase III, epsilon subunit [Roseobacter sp. MED193]
          Length = 243

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 52/197 (26%), Gaps = 58/197 (29%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMP 54
           M  + +D ET         G   ++ D  ++      +                 +  MP
Sbjct: 1   MREIVLDTETT--------GFDPFSGD-RIVEIG-AVELLNHMPTGETFHVYINPERSMP 50

Query: 55  QVLK-------EALENTDVT-I---------------------------VAHNSYFERTV 79
           Q          + LE                                  V HN+ F+   
Sbjct: 51  QEAFGVHGIGPDLLEPPQKPEKGQVTLRDKPVFAKFGQAFLDFVRDSRMVIHNASFDMKF 110

Query: 80  LK----ACFNLDIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIAR 132
           L           +P+ + + TL +A  R  G P+ L A+    ++ +  +   G  L + 
Sbjct: 111 LNFELDRMGLRTLPMEQALDTLAMARKRFPGSPATLDALCRRFQIDNSNRTLHGALLDSE 170

Query: 133 FCKGETHECLYDRNKPN 149
                  E    R    
Sbjct: 171 ILADVYLELSGGRQPDF 187


>gi|262167934|ref|ZP_06035634.1| ribonuclease D [Vibrio cholerae RC27]
 gi|262023661|gb|EEY42362.1| ribonuclease D [Vibrio cholerae RC27]
          Length = 348

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 22  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 78

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 79  QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 122

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 123 QLEYAAADVFYLLPMYEKLVEQVTQAGWWDAALQESE 159


>gi|291613978|ref|YP_003524135.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus
           ES-1]
 gi|291584090|gb|ADE11748.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 233

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 52/174 (29%), Gaps = 29/174 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFA--FG-------------FDDHPVEL- 44
           M  + +D ET       K G  +  E   + L                    D+    + 
Sbjct: 1   MRQIVLDTETTGLDP--KQG-HRIIEVAAIELNGRKVSERTFHRYINPEREIDEGAAAVH 57

Query: 45  ---WDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICT 96
               D + D      +  AL        ++ HN+ F+   L A      L +  +  I T
Sbjct: 58  GLTLDRLQDEPKFAEVAPALLEFIAGAELIIHNAPFDIGFLNAELALAGLPLLNNPVIDT 117

Query: 97  LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
           L +A+         L A+ +  ++ +        L+      E +  +    + 
Sbjct: 118 LKVAKELHPGKKNNLNALCDRYQVDNSHRTLHGALLDTELLAEVYLGMTRGQES 171


>gi|108861996|ref|YP_654112.1| 13 [Enterobacteria phage K1-5]
 gi|40787082|gb|AAR90053.1| 13 [Enterobacteria phage K1-5]
          Length = 846

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 32/135 (23%)

Query: 556 NNLILMLPSGRSLVYRDV--GNNRSYLNTTTRQLTREYTYGGKL-----TENIVQAVSRD 608
               + LPS   L    +  GN   YL        R    GG+L        ++Q     
Sbjct: 644 ARFEVELPSLARLRENVIAQGNKFGYLQAPDGHWGRIRMSGGELKEHTMLNVLLQMTGSL 703

Query: 609 ILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNASMLYHLMTSNPS 656
            +   ++       K G  +        +  VHDEI  E P+ +    +           
Sbjct: 704 CMKYALVRAFAVMRKEGVALDSMGNPCGIANVHDEIQMEVPEDEVLYLNY---------- 753

Query: 657 WAKGLPLKAEGYESK 671
               LP   EG+E++
Sbjct: 754 ---DLPFTLEGFETE 765



 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 38/157 (24%), Gaps = 14/157 (8%)

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            +    +       +  +        +R   IA +GK ++  D AG+E RVL+    +  
Sbjct: 527 AISIGTSTFRMRHRNVVNIPARGLYPLRDLFIAGKGKLILGCDGAGLELRVLSHFMNDPE 586

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
                       +  +         +    +R + K    A  Y  G      +      
Sbjct: 587 Y---------QEIVLHGDIHTHNQMKAGLPKRDMAKTFIYAFLYGSGIANLAAVC----- 632

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
            +              E          +     +   
Sbjct: 633 GVTEEEMEEVVARFEVELPSLARLRENVIAQGNKFGY 669


>gi|259149807|emb|CAY86611.1| Mip1p [Saccharomyces cerevisiae EC1118]
          Length = 1280

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/332 (10%), Positives = 86/332 (25%), Gaps = 73/332 (21%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P+         + + +   + ++       I   +++ V A  G   V AD+   E   
Sbjct: 670 IPKIVPMGTITRRAVENTWLTASNAKANR--IGSELKTQVKAPPGYCFVGADVDSEEL-W 726

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA----QVTKDQRAIGKVMELALGYQGG 444
           +A + G+        T          ++          Q+    R   K+      Y  G
Sbjct: 727 IASLVGDSIFNVHGGTAIGWMCLEGTKNEGTDLHTKTAQILGCSRNEAKIFNYGRIYGAG 786

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
            K   ++      +L                          ++   +            +
Sbjct: 787 TKFASQLLKRFNPSLTD---------------------EETKKIANKLYENTKGKTKRSK 825

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                         + W                           +   K ++      P 
Sbjct: 826 LF-----------KKFWY---------------------GGSESILFNKLESIAEQETP- 852

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNAT 618
                   +G   +Y  +  ++  R  ++        +Q+   D   +L   M   +   
Sbjct: 853 ----KTPVLGCGITY--SLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCSMEYIIKKY 906

Query: 619 KAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
                + +++HDEI     + D++ A+M   +
Sbjct: 907 NLEARLCISIHDEIRFLVSEKDKYRAAMALQI 938


>gi|242009894|ref|XP_002425717.1| DNA polymerase subunit gamma, putative [Pediculus humanus corporis]
 gi|212509618|gb|EEB12979.1| DNA polymerase subunit gamma, putative [Pediculus humanus corporis]
          Length = 1124

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/268 (11%), Positives = 73/268 (27%), Gaps = 42/268 (15%)

Query: 55  QVLKEALENTDV----TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS-------- 102
           + L   L + +      +V HN  ++R+ +K  ++ +    R++ T+ +           
Sbjct: 258 EKLIP-LGDKNKTNPAIVVGHNVSYDRSKIKEQYSFESNAVRFLDTMAIHTCIGGINKNQ 316

Query: 103 ---NGLPSALKAVGEALKL----SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
                  S      E   L       K+  G+E           +     +  + +  + 
Sbjct: 317 TKDLNETSIFNDSSEVFCLISLRDMYKLYCGRE-----ISKTERDVFVKGSILDIKNDFE 371

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-TINDRGYCV-------------DV 201
               YC  D   T EI +++ P+              +      +             D 
Sbjct: 372 NLMSYCSKDTIATFEILQKIFPIFLNRFPHPVTLAGMLEMSVAFLPVTSNWKKFILEADQ 431

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED--LTETTC 259
                L   + +  ++       L +            + W      L  +       T 
Sbjct: 432 TY-EDLKNEMSLILSRKSDLACRLFHNDEFKKDLWLWDENWSIQNLKLTKKKVPNNNETN 490

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSA 287
            +V +    L  +   +F+      ++ 
Sbjct: 491 VKVTAKEDALNEKFQYLFDLGKILPKNK 518


>gi|302497375|ref|XP_003010688.1| hypothetical protein ARB_03390 [Arthroderma benhamiae CBS 112371]
 gi|291174231|gb|EFE30048.1| hypothetical protein ARB_03390 [Arthroderma benhamiae CBS 112371]
          Length = 1138

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 82/330 (24%), Gaps = 75/330 (22%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +          +   +++ V A  G   V AD+   E
Sbjct: 672 PQVIPMGTITRRAVENTWLTASNAK------PNRVGSELKAMVRAPPGYVFVGADVDSEE 725

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   ++        T       R   KV      Y
Sbjct: 726 L-WIASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRNNAKVFNYGRIY 784

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +++            +E +      R + EN       + F+  
Sbjct: 785 GAGLKFAATLLRQFNPSMSEAETKAVAAKLYKETKGTRTTRRILSENPFLRGGTESFVFN 844

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +                  +       A  RR +        +      
Sbjct: 845 KLEEFAEQERPRTP----------------VLGAGITEALMRRFINKGGFMTSR------ 882

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 883 ------------------------------------INWAIQSSGVDYLHLLIISMDYLI 906

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                   + +TVHDEI     +TD++ A+
Sbjct: 907 RRFNLDARLAITVHDEIRYVVRETDKYKAA 936


>gi|242057747|ref|XP_002458019.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor]
 gi|241929994|gb|EES03139.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor]
          Length = 340

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 58/205 (28%), Gaps = 24/205 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL          +  + +    F D  V L D       + Q  K AL
Sbjct: 53  VIGFDCE---GVDL--------CRNGALCIMQLAFPDA-VYLVDAIEGGKELIQACKPAL 100

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVGEALKL 118
           E+  +T V H+   +   L   F   I +H  + T + A S          K   +    
Sbjct: 101 ESDHITKVIHDCKRDSEAL--YFQFGIKLHNVMDTQI-AYSLIQEQEQEGKKKTSDDYNY 157

Query: 119 SSQKMEEGKEL---IARFCKGETHECLYDRNKPNHREAWRLFGEYCK-GDVTVTREIFKR 174
            S       +    I    K E    L                      DV     I+++
Sbjct: 158 ISFVSLLADKRFCGIPYPEKEEVRTLLRQDPNFWTIRPLSDMMVRAATDDVRFLLNIYEK 217

Query: 175 LEPLSSKEQELWYLDQTINDRGYCV 199
           +    SK   LW L         C 
Sbjct: 218 MMEKLSKV-SLWRLAVRSELYCRCF 241


>gi|224476576|ref|YP_002634182.1| hypothetical protein Sca_1089 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421183|emb|CAL27997.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 895

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 105/361 (29%), Gaps = 77/361 (21%)

Query: 6   IDFETRSP----IDLTKCGICKYAEDVCVILFAF------------------GFDDH--- 40
           +D ET        D+ + GI  + +   ++  ++                    +D    
Sbjct: 9   VDLETTGNQKDYDDIIQIGI-TFVKGFEIVG-SYHSLIKTDLEIPPFIQALTSIEDQMLT 66

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL 97
               +       + + + E ++++    VAHN  F+ T LK  F   N+     + I T+
Sbjct: 67  QAPYF-----NEVAEEIYELMKDS--VFVAHNVAFDLTFLKKAFKKSNITYQPRKVIDTV 119

Query: 98  VL---ARSNGLPSALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLYDRN 146
            L   A        L  + E   +                K +I  F    T      + 
Sbjct: 120 ELFKIAFPTDKSYQLSELAEYHDIPLENAHRADEDAATTAKLMIKAFNVLYTLPTDTLKQ 179

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC---VD--- 200
                +  +    Y   DV     + +R       + E +          +    +D   
Sbjct: 180 LFYLSKNLK----YQLHDVIFEM-VRQRGTEPLDNKYEKFEQIIYKKQVDFKSPQIDFEG 234

Query: 201 --VALAHTLNQIVDVER--------TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
                 + +   +              +  +L      L+ +     K   +L      +
Sbjct: 235 TTEDFYNQVIDALGYTFRPQQLYLAETILDQLMHSEKALIEAPLGSGKSLAYLIAALMYN 294

Query: 251 LEDLTE---TTCQRVLSS--NKKLTPQAIQVFNNRMRAS--RSAVLKLN-TLVEAMNSDG 302
           +E       +T  ++L +   +   P   QV   R+ A+  +S    ++  L+  +  D 
Sbjct: 295 IETKQHVMISTNTKLLQNQLLEHDIPTLEQVLGYRINAAIIKSRRDYISLGLISQILKDE 354

Query: 303 R 303
            
Sbjct: 355 T 355


>gi|154336623|ref|XP_001564547.1| exosome subunit rrp6p homologue [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061582|emb|CAM38612.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 735

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 31/177 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E              Y+      L      +    + DC+    +   L     
Sbjct: 254 EIAVDLE----------HHDFYSYQGITCLMQISTREED-FIVDCLQLRSLMGTLAPVFL 302

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  +  V H +  +   L+   +  + +  +  T V  ++  +P +L             
Sbjct: 303 NPLILKVLHGAREDIRWLQK--DFSLYLVNFFDTGVALQTLHMPYSLAFA---------- 350

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  +  FC+ + ++     +      +      Y + D      ++ RL+ L 
Sbjct: 351 -------VDHFCQVKLNKKFQTADWRVRPLS-AEMVHYARQDTHFLLYVYDRLKALL 399


>gi|118161395|gb|ABK64077.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
          Length = 238

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 40/164 (24%)

Query: 1   MATLFIDFETRSPID-----LTKCG-------------------ICKYAEDVCVILFAFG 36
           M  + +D ET          + + G                     + +E+      A  
Sbjct: 1   MRQIVLDTETTGLNPRTGDRILEIGAVELNNRMLTGNNFHHYINPERDSEEG-----ALA 55

Query: 37  FDDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI---- 90
                 E   D      + +  +  +      ++ HN+ F+   L      L++P     
Sbjct: 56  VHGLTTEFLSDKPKFAEIAEEFRAFIA--GAELIIHNAPFDIGFLNAEFKRLNLPPVHEQ 113

Query: 91  -HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            H  I TLV A+        +L A+ +   +S+   +    L+ 
Sbjct: 114 VHGVIDTLVQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLD 157


>gi|307330749|ref|ZP_07609886.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306883641|gb|EFN14690.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 328

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 24/135 (17%)

Query: 6   IDFETRSPI-DLTKCGICKYAEDVC-------VILFAFGFDDHPVELWDCVHD------- 50
           +D ET     D        Y  D           L     D  PV +     +       
Sbjct: 29  VDVETTGLARDDRIVSAAVYQLDARGAVQDHWYTLVNPQRDPGPVWIHGLTEEVLEGAPR 88

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI---CTLVLARSNGLP 106
            P +   L E L +    +VAHN+ F+ ++L   +             CT+ L++  GLP
Sbjct: 89  FPEIAGELAERLAD--RVLVAHNAAFDWSMLAREYARSKSAAPVRQRLCTIALSKELGLP 146

Query: 107 ---SALKAVGEALKL 118
                L+ +     +
Sbjct: 147 LPNHKLETLAAHYGV 161


>gi|297161567|gb|ADI11279.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
           BCW-1]
          Length = 324

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 24/135 (17%)

Query: 6   IDFETRSPI-DLTKCGICKYAEDVC-------VILFAFGFDDHPVELWDCVHD------- 50
           +D ET     D        Y  D           L     D  PV +     D       
Sbjct: 25  VDVETTGLARDDRIVSAAVYQLDARGAVQDHWYTLVNPQRDPGPVWIHGLTSDTLADAPL 84

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP 106
              +   L + L      +VAHN+ F+ ++L   +       P+ + +CT+ L++  GLP
Sbjct: 85  FSEIADELAQHL--DGRVLVAHNAVFDWSMLAREYARAGSAAPVRQRLCTIALSKELGLP 142

Query: 107 ---SALKAVGEALKL 118
                L+++     +
Sbjct: 143 LPNHKLESLAAHYGV 157


>gi|168060140|ref|XP_001782056.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666467|gb|EDQ53120.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 319

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 58/186 (31%), Gaps = 17/186 (9%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G         + +    FD+  V L D  +    + Q  K  L
Sbjct: 29  VIGFDCE---GVDLARYG--------RLCVMQLAFDNA-VYLVDAVLGGNALMQSCKLGL 76

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+  +  V H+   +   L   F  +I ++    T +             + +       
Sbjct: 77  ESPYIIKVCHDCKRDSEAL--YFQYNIKLNNVFDTQIAFSLLEEQRGKNWMPDDYISFVD 134

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHRE-AW-RLFGEYCKGDVTVTREIFKRLEPLS 179
            + + +     + + E    L  ++        W  +       DV     I++R+    
Sbjct: 135 LLADERYCGVAYDEKEEVRMLLRKDPQFWAHRPWTVMMKRVAADDVRFLLCIYERMVKSL 194

Query: 180 SKEQEL 185
           +   + 
Sbjct: 195 TDLSKW 200


>gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 244

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 47/163 (28%), Gaps = 38/163 (23%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-----DVCVILFAFGF 37
           M  + +D ET                       LT   +  Y       D      A   
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPG----ALAV 56

Query: 38  DDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI----- 90
                E   D      +   +++ +      ++ HN+ F+   L      LD+P      
Sbjct: 57  HGLTTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHC 114

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              I TLV A+        +L A+ +   +S+        L+ 
Sbjct: 115 GGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLD 157


>gi|111018828|ref|YP_701800.1| DNA polymerase III [Rhodococcus jostii RHA1]
 gi|110818358|gb|ABG93642.1| probable DNA polymerase III [Rhodococcus jostii RHA1]
          Length = 649

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 25/150 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYA----EDV----CVI-LFAFGFDDHPVELWDCVHD-- 50
             + +D ET      T   +   A    ED      ++ L   G D  PV + +      
Sbjct: 70  RWVVVDVETSGLRSSTHRVLSVAALALREDGSVERELVTLLNPGCDPGPVHIHNLTPQRL 129

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
                   +   L E L     T+VAHN+ F+   L        + +P  + +CTL L+R
Sbjct: 130 AGAPRFEEVANDLLELL--DGRTLVAHNASFDYGFLDAEVRRAGMTMPTRQRLCTLALSR 187

Query: 102 SNG---LPSALKAVGEALKLSSQKMEEGKE 128
                     L  +    K+   +  +  +
Sbjct: 188 RLEIDVPNHKLSTLAAHWKVRQNRAHDAYD 217


>gi|329891169|ref|ZP_08269512.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328846470|gb|EGF96034.1| DNA polymerase III, epsilon subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 241

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 30/157 (19%)

Query: 2   ATLFIDFETRSPID-----LTKCGICKYAE------------DVCVILF---AFGFDD-H 40
             + +D ET          L + G  +  +            +    L    A       
Sbjct: 3   REIVLDTETTGFDPKTGDRLIEVGCIEIEDLLPTGRTFHRFINPE-RLIPPDAIKVHGIT 61

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRWICT 96
             ++ D      +   L E L +    ++AHN+ F+R  +            P  RWI T
Sbjct: 62  DDKVKDAPKFHEVVDDLMEFLGDA--PLIAHNANFDRNFIDFEIGRIGRTPPPQDRWIDT 119

Query: 97  LVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           L LA  R  G+ ++L A+ +  K+S  +      LI 
Sbjct: 120 LALAQKRFPGMANSLDALCKRYKISLVERTLHGALID 156


>gi|326804439|ref|YP_004327243.1| DNA polymerase [Pseudomonas phage PAK_P1]
 gi|290873852|gb|ADD65055.1| DNA polymerase [Pseudomonas phage PAK_P1]
          Length = 911

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 62/227 (27%), Gaps = 66/227 (29%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVT-IVAHN-SYFERTVLKACFNLDIPIHR------ 92
           PVE           +  K  +    +  +VAHN   F+   +K   ++D  I        
Sbjct: 112 PVEYIHLP-----LKEFKNYVAKRRIKRVVAHNMINFDLMSMKLVEDMDFTIGVEHRDGG 166

Query: 93  ---------------WICTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARF 133
                          +  TLV++++         +L  +       ++            
Sbjct: 167 LTTWSADTWMGKQVVFDDTLVISKTCNPDLFGGHSLDKLSRRAGGDTKID---------- 216

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------- 182
                H     R      +       YC  DV     ++  L+     +           
Sbjct: 217 --FRKHLAPDVRFLDFAAD----MLYYCIYDVKANTAVWHWLQDHEDYQLSDRDNYIKNW 270

Query: 183 -------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                  +++  +      RG+ ++V L     + +D +  +    +
Sbjct: 271 LSPIQLEKKVAEIITYQEHRGFVLNVDLCEKAVKDLDAKMEERRARV 317


>gi|293392299|ref|ZP_06636633.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952833|gb|EFE02952.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 385

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 100/364 (27%), Gaps = 46/364 (12%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L    F D    +         P    E L +T++  + H    +  V +  F   
Sbjct: 50  PKLGLIQMYFGDQVALIDPLPIQDFSP--FIELLADTNLVKILHACSEDLDVFQRYFQQL 107

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                   T V+A   G   +             ++++G        +  +         
Sbjct: 108 --PRPMCDTQVMAHFLGFAGSTGFATLVQHYFQIEIDKGASRTDWLARPLSDTQ------ 159

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN-----DRGYCVDVA 202
                      +Y   DV     ++ +++   ++ +    ++               D  
Sbjct: 160 ----------LQYAAADVWYLLPLYGQMQQQLTQTEWQSAVENECEFLLNKRAQTTKDPD 209

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL--FLETGLHLEDLTE--TT 258
            A+                L+ L    +  +   +    ++          +   +  +T
Sbjct: 210 SAYFAIPNAWKLNRLELMRLKLLAKWRMEEAMKRDLALNFVVRAENLWQVAKSNPKHIST 269

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGT---LQFLGASR 315
              +  S  ++     ++     +  R         ++ +  D R + T   LQ      
Sbjct: 270 LPELGLSTAEVRIHGKKLLQIIDQVKRIVPEDYPPPIQRLADDPRYKATLKALQQHLIQI 329

Query: 316 TGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKK 375
           T         P NLP+   + +   + +        S+ D  +++    R       G+K
Sbjct: 330 T---------PPNLPKELIAGKRHLESLMKWHWLKNSEDDLPELLMGW-RKPF----GEK 375

Query: 376 LVVA 379
           L+ A
Sbjct: 376 LLAA 379


>gi|327279914|ref|XP_003224700.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Anolis
           carolinensis]
          Length = 1327

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 64/222 (28%), Gaps = 39/222 (17%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    +    ++  V L      +    L+        P  LK  LE+  +  +     
Sbjct: 76  DIEWTPVFTKGKEGKVALIQLCESEEKCYLFHISSMSNFPGGLKRLLEDNHIKKI----- 130

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME-----EGKEL 129
                      + I   +W    ++         L  + +   L+++K+         +L
Sbjct: 131 ----------GVGIEGDKW---KLM---RDFEVNLGDLVDLADLANKKLRCKEIWSLNDL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           +      +  +    R               Y   D      I+K+L  +SS ++    +
Sbjct: 175 VKHLFHKQLLKEKLVRCGNWEEFPLTEEQKLYAATDAYAGFLIYKKLMTMSSDKKLQISI 234

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                  G          L+  +  E   + +E+  LT  L 
Sbjct: 235 ----EKDGIL--------LSSEIKKELATMSEEMIDLTDHLP 264


>gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 318

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 75/267 (28%), Gaps = 37/267 (13%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPNHREAWRL 156
                +     L+ +   L +         + I      +       +R +  ++ +   
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEERQRKVNKVSLDE 189

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA-----LAHTLNQIV 211
              Y    V       KR            YLD         V V      +   + +  
Sbjct: 190 IVVYEA--VKEMLARNKRNVEWLRCMNVGSYLDIKAFYPVMRVKVKGRKKYVLTDILEDD 247

Query: 212 DVERT---KLDQELESLTYGLVSSSRC 235
             E     K +Q L+S           
Sbjct: 248 VKEICTSLKCEQALKSEVGNTRIMLNS 274


>gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 829

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 63/220 (28%), Gaps = 19/220 (8%)

Query: 48  VHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTL-VLARS 102
            H      V +E  E +    +V HN  F+  ++        ++ P  RW  TL +  R 
Sbjct: 521 THGQPAATVFREFCEFSQGAVLVGHNLGFDIKMVTAHARRVGIEFPSPRWEDTLNLAHRF 580

Query: 103 N-GLPSALKAVGEALKLSSQKMEEGKELIA------RFCKGETHECLYDRNKPNHREAWR 155
                  L  +  +L LS+       +                      R          
Sbjct: 581 IQSENYKLATLASSLNLSATPTHRASDDTRTTVALLEAILPLLDSGRTARQ-ALVAAYAD 639

Query: 156 LFGEYCKGDV---TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            F            ++ ++           +   Y D T  ++G   D      L Q+VD
Sbjct: 640 QFRPLAAQFAQWRDLSHQLRPAALMEKVLWESGLYDDYTREEKGD--DRPALVHLYQLVD 697

Query: 213 VERTKLDQELESLTY-GLVSSSRCLEKLKTWLFLETGLHL 251
           + + K + +L   T    +     L K    L  E  L  
Sbjct: 698 LFQYKDNLQLHPHTALRPILEFTTLAKSLDQLSREENLLP 737


>gi|303235494|ref|ZP_07322106.1| exonuclease [Prevotella disiens FB035-09AN]
 gi|302484293|gb|EFL47276.1| exonuclease [Prevotella disiens FB035-09AN]
          Length = 183

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 21/121 (17%)

Query: 1   MATLFIDFETRS---------PIDLTKCGICKYAEDVCVI--LFAFGFDDHPVELW---D 46
           +  + IDFET S          I + K G         V     A+ + +  V      D
Sbjct: 4   INFIAIDFETASNAQAAICEAGISIVKGGKVVETRSWLVRPEGNAYNYWNTRVHGITAKD 63

Query: 47  CVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
             H P  PQ    +   L +  +  VAHN+ F+   ++     + L  P   + C+L  A
Sbjct: 64  TAHAPEFPQVWNEIMTYLADCPIL-VAHNAGFDMGCIRRSLAFYGLKTPEITYYCSLRAA 122

Query: 101 R 101
           R
Sbjct: 123 R 123


>gi|291276271|ref|YP_003516043.1| DNA polymerase III subunit epsilon [Helicobacter mustelae 12198]
 gi|290963465|emb|CBG39295.1| Putative dna polymerase III epsilon subunit [Helicobacter mustelae
           12198]
          Length = 247

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 29/179 (16%)

Query: 5   FIDFETRSPID----LTKCGICKY-----AEDVCVILFAFGFDDHPVELW--------DC 47
           F+D ET         + + G  KY      +    ++F+    ++  EL         D 
Sbjct: 69  FVDIETTGSKPNHSSIIEIGAIKYHGGEIIDTFETLVFSQSVPENITELTGIDAGMLADA 128

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLAR-- 101
             +  + Q  ++ L N+    VAHN  F+       L    N    ++  +CT+ LAR  
Sbjct: 129 PSEREVLQRFRKFLGNS--VFVAHNVVFDYGFISDRLLRY-NEPYLLNPRLCTVELARRG 185

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                 +L  +   L +   K       ++          +     PNH +  +   EY
Sbjct: 186 ILSARYSLGHLNAFLGIGIDK---QHRALSDAFICLKVFEIAQLTLPNHVQNIQGLIEY 241


>gi|238020074|ref|ZP_04600500.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748]
 gi|237863598|gb|EEP64888.1| hypothetical protein VEIDISOL_01954 [Veillonella dispar ATCC 17748]
          Length = 209

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 22/140 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKY-AEDVCVILFAFG--------FDDHPVELWDCVHDPV 52
             + +DFET +    + C +     +D  +I  A+         FDD  +E+       V
Sbjct: 3   DFVALDFETANKFKNSACSLAVITVKDGQIIKKAYSLIKPPFMSFDDECIEIHGIQPKDV 62

Query: 53  MPQVLKEALEN---TDVTI----VAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
           + +   + L N    +       VAHN+ F+  VL+A    + +  P   + CT+ L+R+
Sbjct: 63  IHEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPDLDYACTVKLSRA 122

Query: 103 NGL---PSALKAVGEALKLS 119
                    L  +   + + 
Sbjct: 123 VWPDLVNHKLNTMAAYIGVE 142


>gi|319404161|emb|CBI77754.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
          Length = 383

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/289 (10%), Positives = 77/289 (26%), Gaps = 26/289 (8%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D  + L D +   +  Q   + + +  V  V H +  +  ++       
Sbjct: 37  PQLCLIQVASPDITI-LIDPMAQDINLQPFFDLMIDKKVVKVFHAARQDIEII-YHLG-G 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           I       T V     G   ++       + +   +++        C+  +     ++  
Sbjct: 94  IIPSPLFDTQVAGSICGFGDSISYDQIVQRCTGHHLDKSSRFTDWSCRPLS-----EKQL 148

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
                       Y   DV +  +     +  +    +   L  T        + A     
Sbjct: 149 LYAVSD----VTY-LRDVYLALKKQLEEKKRTHWMHDEMALLLTPTTYDIPENEAWKKVK 203

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEK--LKTWLFLETGLHLEDLTETTCQRVLSS 265
            +I       + Q++ +             +  +K    +E  +          +  L  
Sbjct: 204 GRITKKRELAVLQKIAAWREREARQYNVPRRHIMKDECLIEIAIQQPK-----DEAALYR 258

Query: 266 NK------KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
            +        +P    +     +  ++ +  L  L +    D +   T+
Sbjct: 259 LRSINKSWHHSPAVHTLIEAIHQGLKADLATLPALPKYNAIDDKTAVTI 307


>gi|254452968|ref|ZP_05066405.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           238]
 gi|198267374|gb|EDY91644.1| DNA polymerase III, epsilon subunit [Octadecabacter antarcticus
           238]
          Length = 242

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 41/159 (25%)

Query: 1   MATLFIDFETR----SPID-LTKCGI-------------CKY--------AEDVCVILFA 34
           M  + +D ET     S  D + + G               +Y        A    +    
Sbjct: 1   MREIVLDTETTGFEPSEGDRIVEIGAIELHNHMPTGRTYHQYINPKRTMPAGAFGIHGIG 60

Query: 35  FGFDDHP-----VELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLD 87
               + P      ++   + D  +   + +A  +   D  +V HN+ F+   L A     
Sbjct: 61  PDLLEPPQTPTAGQV--LLRDKPVFAEIAQAFVDFIGDSKLVIHNAAFDMKFLNAELGWV 118

Query: 88  ----IPIHRWICTLVLAR--SNGLPSALKAVGEALKLSS 120
               +P+ + + TL +AR    G P++L A+     + +
Sbjct: 119 NRPLLPMGQSLDTLGIARKKFPGSPASLDALCRRFGIDN 157


>gi|134299597|ref|YP_001113093.1| DNA polymerase III subunit epsilon [Desulfotomaculum reducens MI-1]
 gi|134052297|gb|ABO50268.1| DNA polymerase III, epsilon subunit [Desulfotomaculum reducens
           MI-1]
          Length = 930

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 28/139 (20%)

Query: 4   LFIDFETRSPI----DLTKCGICKYAEDVCVILFAF----------------GFDDHPVE 43
           + +D ET        ++ + G+ K  +   +  F+                 G  DH ++
Sbjct: 5   VALDLETSGLDCLQDEIIEIGLVKMVDGKEIDSFSTLIRPKGILPVKIKRLTGIKDHELQ 64

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
             D      +  V+ + + +  + +V HN  F+   L       +  +    TL L++  
Sbjct: 65  --DAPKLQEVLPVILQFIAD--LPLVGHNVKFDYDFLSTAVQSPLA-NPLYDTLELSKYL 119

Query: 104 GLPSA---LKAVGEALKLS 119
              ++   L  +   L + 
Sbjct: 120 MPGASNHRLGYLCSYLGID 138


>gi|315930823|gb|EFV09817.1| Polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 212

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 42/152 (27%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 79  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 138

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 139 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 188

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                    + +      EYC+ DV  T  +F
Sbjct: 189 --------FYEDELEKIHEYCESDVLNTYMLF 212


>gi|261209844|ref|ZP_05924146.1| ribonuclease D [Vibrio sp. RC341]
 gi|260841142|gb|EEX67662.1| ribonuclease D [Vibrio sp. RC341]
          Length = 398

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 72  FDGENLSLIDPTVMDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 128

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 129 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 172

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 173 QLEYAAADVFYLLPMYEKLVERVTQAGWWEAALQESE 209


>gi|149410714|ref|XP_001508312.1| PREDICTED: similar to Werner syndrome [Ornithorhynchus anatinus]
          Length = 1813

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 67/244 (27%), Gaps = 54/244 (22%)

Query: 3   TLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            +  D E   T S   L             V L      D    L+        P+ LK 
Sbjct: 464 VIGFDIEWPPTYSKGKL-----------GRVALIQLCVSDQKCYLFHISSMSGFPKGLKM 512

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            LEN  +                   + I   +W    +L+        LK+  E   ++
Sbjct: 513 LLENEAIRK---------------AGVGIEGDQW---KLLS---DFEIKLKSFVELADVA 551

Query: 120 SQKMEEGKE-----LIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFK 173
           ++K++  ++     L+      +  +    R               Y   D      I++
Sbjct: 552 NEKLKCKEKWSLNSLVKHLFNKQLLKDKAIRCSSWDEFPLTEDQKLYAATDAYAGFIIYQ 611

Query: 174 RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
           +             L           +V     L + +  + T + +E+  L   L  + 
Sbjct: 612 K-------------LATLGCAEQILFNVKREEMLPRDLKEQLTSMSEEIIDLANHLPVTF 658

Query: 234 RCLE 237
           +  E
Sbjct: 659 QKPE 662


>gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis]
 gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114]
          Length = 1437

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 26/145 (17%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVH------ 49
            +  D ET        D+ + G      +       F             +  H      
Sbjct: 407 YVVFDLETTGLSPRLDDIIEFGATIVKNNTITQKIQFFLQTKRELSAFTVESSHINNEML 466

Query: 50  -----DPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRWI--CTLVLAR 101
                     + + E L++     VAHN+ F+    K     L +   +     TL L+ 
Sbjct: 467 KNGYAQEEGIKKIYEILKDK--IAVAHNANFDINFCKEKFSKLGLDNSKIFGLDTLALSY 524

Query: 102 SNGLP---SALKAVGEALKLSSQKM 123
                    +L  V +   +     
Sbjct: 525 FLNPDEFRHSLGYVAKRFNIIYDTT 549


>gi|254796828|ref|YP_003081665.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str.
           Illinois]
 gi|254590057|gb|ACT69419.1| DNA polymerase III, epsilon subunit [Neorickettsia risticii str.
           Illinois]
          Length = 228

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 33/149 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL---- 57
             + +D ET    D+      +  E  CV +  F      +       +  + +      
Sbjct: 5   RKVILDTETTGL-DMKNG--DRVIEIGCVEMVDFRI-TGEIFHIYLNPEREISKEATRVH 60

Query: 58  ---KEALENT---------------DVTIVAHNSYFERTVLKACFNLD-----IPIHRWI 94
               E L ++                  IVAHN+ F+   L +          I +   I
Sbjct: 61  GITFEQLADSPKFIDIADDFLQFIGSSEIVAHNASFDIRFLNSELIRARQRRLIKLENVI 120

Query: 95  CTLVLARSN--GLPSALKAVGEALKLSSQ 121
            TL +AR    G P++L A+    ++S +
Sbjct: 121 DTLAMARKIFPGSPASLDALCRRFRISLE 149


>gi|149244804|ref|XP_001526945.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449339|gb|EDK43595.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 826

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/197 (11%), Positives = 47/197 (23%), Gaps = 32/197 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D E              Y     ++       +     + D +        L    
Sbjct: 252 EIAVDLE-----------HHDYRSYYGLVCLMQIS-NREKDWVIDTLALRDELSKLNVIF 299

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N ++  V H ++ +   L+    L I       T   +R  G                 
Sbjct: 300 TNHEIVKVFHGAFMDIIWLQRDLGLYI--VSLFDTYHASRQLGFAK-------------- 343

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                + L+  F    T +     +             Y + D      I+ +L      
Sbjct: 344 --FSLQYLLDTFAHFRTSKKYQLADWRIRPLP-APMLAYARSDTHFLLYIYDQLRNKLID 400

Query: 182 EQELWYLDQTINDRGYC 198
           + +L  +   +      
Sbjct: 401 QDKLSKVLFELRQVAKR 417


>gi|150402066|ref|YP_001329360.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
 gi|150033096|gb|ABR65209.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C7]
          Length = 190

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 36/123 (29%)

Query: 3   TLFIDFETRS----------------PIDLTKCGICKYAED------VCVILFAFGFDDH 40
            +F+D ET                   ++L K     Y+ D        +        D 
Sbjct: 2   YVFLDTETTGLHPGQIAQLSYLVTDEDLNLKKVFNQYYSVDRMSRSAAKIHGLTMEILDE 61

Query: 41  PVELWDCVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
                   +          +++ LE++   I+ HN  F+   LK        +       
Sbjct: 62  ------LSNGMTFEDTVDEVRDDLEDS--IIIGHNISFDIRFLKTEFERLGPEYVPKDKF 113

Query: 95  CTL 97
           CT+
Sbjct: 114 CTM 116


>gi|327484520|gb|AEA78927.1| Ribonuclease D [Vibrio cholerae LMA3894-4]
          Length = 348

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 22  FDGENLSLIDPTVLDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 78

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 79  QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 122

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    ++        Q   
Sbjct: 123 QLEYAAADVFYLLPMYEKLVERVTQAGWWDAALQESE 159


>gi|297380606|gb|ADI35493.1| DNA polymerase III polC-type [Helicobacter pylori v225d]
          Length = 287

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 40/143 (27%), Gaps = 36/143 (25%)

Query: 5   FIDFETRSPIDLTKCGICKYAED-----------------------VCVILFAFGFDDHP 41
           FID ET     L    +   A                           +   A+      
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAY----ED 130

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLV 98
                  H     Q L+  L N+    VAHN+ F+   L   F   +        +CTL 
Sbjct: 131 TLNAPSAH--EALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLD 186

Query: 99  LA--RSNGLPSALKAVGEALKLS 119
           L+      +  +L  + E L   
Sbjct: 187 LSKRAILSMRYSLSFLKELLGFG 209


>gi|83571734|ref|YP_424986.1| putative DNA polymerase [Enterobacteria phage K1E]
 gi|83308185|emb|CAJ29417.1| gp13 protein [Enterobacteria phage K1E]
          Length = 848

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 32/135 (23%)

Query: 556 NNLILMLPSGRSLVYRDV--GNNRSYLNTTTRQLTREYTYGGKL-----TENIVQAVSRD 608
               + LPS   L    +  GN   YL        R    GG+L        ++Q     
Sbjct: 644 ARFEVELPSLARLRENVIAQGNKFGYLQAPDGHWGRIRMSGGELKEHTMLNVLLQMTGSL 703

Query: 609 ILAEGMMN----ATKAGYDI--------VLTVHDEIVCETPDTDEFNASMLYHLMTSNPS 656
            +   ++       K G  +        +  VHDEI  E P+ +    +           
Sbjct: 704 CMKYALVRAFAVMRKEGVALDSMGNPCGIANVHDEIQMEVPEDEVLYLNY---------- 753

Query: 657 WAKGLPLKAEGYESK 671
               LP   EG+E++
Sbjct: 754 ---DLPFTLEGFETE 765



 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 38/157 (24%), Gaps = 14/157 (8%)

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            +    +       +  +        +R   IA +GK ++  D AG+E RVL+    +  
Sbjct: 527 AISIGTSTFRMRHRNVVNIPARGLYPLRDLFIAGKGKLILGCDGAGLELRVLSHFMNDPE 586

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
                       +  +         +    +R + K    A  Y  G      +      
Sbjct: 587 Y---------QDIVLHGDIHTHNQMKAGLPKRDMAKTFIYAFLYGSGIANLAAVC----- 632

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAI 494
            +              E          +     +   
Sbjct: 633 GVTEEEMEEVVARFEVELPSLARLRENVIAQGNKFGY 669


>gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 1475

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 36/190 (18%)

Query: 4   LFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD------------- 46
           + +D ET        D+ + G  +      ++  +F     P +                
Sbjct: 455 VVLDIETTGFSPIGDDIIELGAVR-CRGGEIVD-SFQSFVRPTKPVPPEVQKLTNITPDM 512

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVLAR 101
               P   + L+   +   D  +VAHN+ F+ + L+         +   +  + TL LAR
Sbjct: 513 LEGAPEAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKYLGEEFA-NPVLDTLTLAR 571

Query: 102 SNGLP---SALKAVGE--------ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
           +        +L A+ +          +  +        L+    + E  E + D N+   
Sbjct: 572 AVLPHMRSHSLAALTKELQVPLVDHHRADADAKTAAMVLMKLLERAEGVETVADLNRLTK 631

Query: 151 REAWRLFGEY 160
                    Y
Sbjct: 632 GINVEQLRPY 641


>gi|332882889|ref|ZP_08450497.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679166|gb|EGJ52155.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 182

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 27/144 (18%)

Query: 1   MATLF-IDFETRSPIDLTKCGIC-KYAEDVCVILFAFG-FDDHPVEL--W---------- 45
           M     IDFET +    + C +      D  + +  +     +P     W          
Sbjct: 19  MKDFAAIDFETANGQRSSICSVGLVVVRDGEITIRHYRLVRPYPNYYNYWNTQVHGMSFQ 78

Query: 46  DCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
           D  H    P+    +   +E   + +VAHN  F+   LK     + ++ P + + CTL  
Sbjct: 79  DTAHAAPFPEVWREIIPLIE--GLPLVAHNRPFDEGCLKAAFQAYGMEYPGYPFHCTLRA 136

Query: 100 ARSNG----LPSALKAVGEALKLS 119
           +R           L+ V       
Sbjct: 137 SRLAFGRDLPNHQLQTVALRCGYD 160


>gi|296419821|ref|XP_002839490.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635651|emb|CAZ83681.1| unnamed protein product [Tuber melanosporum]
          Length = 838

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 48/180 (26%), Gaps = 36/180 (20%)

Query: 3   TLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            + +D E   TR+ I LT              L      D    + D +      + L E
Sbjct: 258 EIAVDLEHHDTRTYIGLTC-------------LMQLSTRDDD-YIVDTLKLRGQLEPLNE 303

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
              N  V  V H ++ +   L+    L I       T   A++         +   LK  
Sbjct: 304 IFTNPRVIKVLHGAFMDIIWLQRDLGLYI--VGLFDTFYAAQALEFARF--GLAHILK-- 357

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  K +     K         R  P      +   +Y + D       F  +    
Sbjct: 358 -------KYVNFDADKQYQMADWRLRPLP------KEMLDYARSDTHYLLYCFDCMRNSL 404


>gi|271501671|ref|YP_003334697.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech586]
 gi|270345226|gb|ACZ77991.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech586]
          Length = 244

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 48/167 (28%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHKIIEIG-AVEVVNRRLTGRHFHVYLRPDRLIDP 60

Query: 41  PVELWDCVHDPVMPQ-----VLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPI 90
                  + D  +        + +   +      +V HN+ F+   +         DIP 
Sbjct: 61  EAYNVHGISDEFLADKPTYAEVADDFIDFIRGAELVIHNASFDIGFMDYEFRLLGRDIPK 120

Query: 91  HRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
               CT    L++AR         L A+ +  ++ + K      L+ 
Sbjct: 121 TETFCTITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLD 167


>gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 1_1_41FAA]
          Length = 1449

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 36/148 (24%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVI---------LFAF--------GFDDHPV 42
           +  D ET         + + G  K      +I           +            +  V
Sbjct: 423 VVFDIETTGLNSHTNKIIEIGAVKIKA-GRIIDRYSQLINPGISIPYHITEITSITNEQV 481

Query: 43  ELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTL 97
                 + P + +V+ + +E   D  +VAHN+ F+   +K       N+D+     I TL
Sbjct: 482 -----ANQPKIDEVIGKFVEFIGDAVLVAHNAPFDMGFIKRDIKEYLNIDLE-CSVIDTL 535

Query: 98  VLARSNGLP---SALKAVGEALKLSSQK 122
            +AR          L  + +AL L+ +K
Sbjct: 536 QMARDLFPDFKKYGLGDLNKALGLALEK 563


>gi|229472455|gb|ACQ72742.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 40/142 (28%), Gaps = 12/142 (8%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            R   I   G KLV +DLAGIE RV A   G  ++ +       +D++     +      
Sbjct: 12  CRELFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI----- 66

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQK-MASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                  R   K +  A  Y            S    +           +  +     E 
Sbjct: 67  ----GISRRAVKTVTYAFLYGASDVKIGTSYDSQLTEDQARKKGSEIRRAYLDAIPGLEQ 122

Query: 481 FCRWMQENHPEHAIEDLFIGTA 502
               +++   E        G  
Sbjct: 123 LVEAVKKKAKEAGSIRSIDGRK 144


>gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           MSMB43]
          Length = 241

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 36/190 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET       + G  +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTGLN--ARAG-DRIIEVGCVELLNRRLTGSNLHFYVNPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-----IH 91
               E   D      +   L++ + + ++ I  HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLSDKPKFAEIVDQLRDFVRDAELII--HNAPFDLGFLDAEFALLGLPSFTDHCA 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TLV A+        +L A+ +   +S+        L+      E +  +    +  
Sbjct: 116 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESL 175

Query: 150 HREAWRLFGE 159
             +     G+
Sbjct: 176 VIDMLDEAGD 185


>gi|229916087|ref|YP_002884733.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium sp.
           AT1b]
 gi|229467516|gb|ACQ69288.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium sp.
           AT1b]
          Length = 188

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 36/146 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA-----------------EDV-----CVILFAFGFDDH 40
            L +D ET +    + C +                     ED       V          
Sbjct: 5   ILALDVETANRDSRSICSVGWSILQNGDVVETDQRLVNPEEDFDMGNIRVHGI------R 58

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICT 96
           P ++WD    P +   L   L   D  ++AHN+ F+   L+         D P   + CT
Sbjct: 59  PSDVWDAPALPEVLSSLYPILREVD-LVIAHNASFDMGALRKAIVKYDLFDFPTIEYGCT 117

Query: 97  LVLARSNGLP---SALKAVGEALKLS 119
           + L+R          L  + E L + 
Sbjct: 118 VKLSRKLYPGLPNHKLNTMAEHLNVP 143


>gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 204

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 25/141 (17%)

Query: 1   MATLF--IDFETRSPIDLTKCGICKYAEDVCVIL------FAFGFDDHPV---ELWDCVH 49
           M  ++   D ET              A    +I            +       E+ +   
Sbjct: 1   MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDVRITKNSGTKLTPEIINLTG 60

Query: 50  DPV------MPQVL-KEALEN--TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
                    +P+ L    L    +   +VAH++ F+ + L       +    ++CT VL+
Sbjct: 61  INESMMRGGIPEELAIPLLACFMSGSIVVAHHAPFDLSFLARYL---VEPSSFVCTRVLS 117

Query: 101 RSN--GLPSALKAVGEALKLS 119
           +    G  ++L AV E   + 
Sbjct: 118 KLVEPGESASLAAVAERRGIE 138


>gi|317014965|gb|ADU82401.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           Gambia94/24]
          Length = 287

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 46/137 (33%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     L    +   A       +I     L       D+  EL    ++  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVRGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 134

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 135 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 193 LSMRYSLSFLKELLGFG 209


>gi|304396540|ref|ZP_07378421.1| DNA-directed DNA polymerase [Pantoea sp. aB]
 gi|304356049|gb|EFM20415.1| DNA-directed DNA polymerase [Pantoea sp. aB]
          Length = 784

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 52/216 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTQHGELYCIGLEG-CGQRQVYMLGPANGDASTLDFELIYLDSRPQLLEALN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
           +     + DV  +  N   F+  VL+     + + + + R                    
Sbjct: 210 QWFADHDPDVL-IGWNVVQFDLRVLQKHADRYGIPLRLGRQQAALEWREHGFKPGVYFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L++V + L      + EGK +   + + E     + 
Sbjct: 269 ASGRLIIDGIDALKSAFWDFPSFSLESVSQQL------LGEGKAIDNPWQRMEEINWRFA 322

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            +KP           Y   D  +   IF +   +  
Sbjct: 323 NDKP-------ALARYNLKDCELVTRIFHKTAIMPF 351


>gi|254780064|ref|YP_003058171.1| DNA polymerase III subunit epsilon [Helicobacter pylori B38]
 gi|254001977|emb|CAX30236.1| DNA polymerase III epsilon subunit [Helicobacter pylori B38]
          Length = 287

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 40/143 (27%), Gaps = 36/143 (25%)

Query: 5   FIDFETRSPIDLTKCGICKYAED-----------------------VCVILFAFGFDDHP 41
           FID ET     L    +   A                           +   A+      
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAY----ED 130

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLV 98
                  H     Q L+  L N+    VAHN+ F+   L   F   +        +CTL 
Sbjct: 131 TLNAPSAH--EALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLD 186

Query: 99  LA--RSNGLPSALKAVGEALKLS 119
           L+      +  +L  + E L   
Sbjct: 187 LSKRAILSMRYSLSFLKELLGFG 209


>gi|208435412|ref|YP_002267078.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
 gi|208433341|gb|ACI28212.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
          Length = 264

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     +    +   A       +I     L       D+  EL    ++  +  
Sbjct: 52  FIDLETTGSCPIKHEILEIGAVQVRGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 111

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 112 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 169

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 170 LSMRYSLSFLKELLGFG 186


>gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus sp. SIP3-4]
 gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus sp. SIP3-4]
          Length = 234

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 44/164 (26%), Gaps = 40/164 (24%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  +F+D ET                       +T      Y   D  +           
Sbjct: 1   MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPDREI-----DAGAQE 55

Query: 42  VELW------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH---- 91
           V         D      +     + ++++++ I  HN+ F+   L A             
Sbjct: 56  VHGITLEFLQDKPRFADVVGEFLDFVQDSELII--HNAPFDVGFLNAELGRIEKPGIESV 113

Query: 92  --RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
               I TL +A+         L A+     + + K      L+ 
Sbjct: 114 ASGIIDTLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLD 157


>gi|227877226|ref|ZP_03995299.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01]
 gi|256842782|ref|ZP_05548270.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256848912|ref|ZP_05554346.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US]
 gi|293380675|ref|ZP_06626725.1| exonuclease [Lactobacillus crispatus 214-1]
 gi|312977700|ref|ZP_07789447.1| exonuclease [Lactobacillus crispatus CTV-05]
 gi|227863082|gb|EEJ70528.1| DNA polymerase III alpha chain [Lactobacillus crispatus JV-V01]
 gi|256614202|gb|EEU19403.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256714451|gb|EEU29438.1| DNA polymerase subunit III alpha [Lactobacillus crispatus MV-1A-US]
 gi|290922772|gb|EFD99724.1| exonuclease [Lactobacillus crispatus 214-1]
 gi|310895439|gb|EFQ44506.1| exonuclease [Lactobacillus crispatus CTV-05]
          Length = 177

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------LFAFGFDDHPVELW---DC 47
           M  + +DFET +    + C +      +  ++            F   +  V      D 
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNNKIVDRFYTVINPQMPFDARNIQVHQITAEDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V    + L    + + AHN+ F+  V++     + ++ P +  I TL  ++ 
Sbjct: 61  KNAPTMAEVWPHIKELYQPGMLVAAHNARFDTNVMRQSLARYGIEEPHYLVIDTLASSKL 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V EAL + 
Sbjct: 121 LEPELPDHKLDTVSEALNVE 140


>gi|319427358|gb|ADV55432.1| 3'-5' exonuclease [Shewanella putrefaciens 200]
          Length = 301

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 30/215 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             +  D ETR           +  +   + L      D    L+          +LK  L
Sbjct: 114 RVIGFDTETR-------ASFERGVQHP-LSLIQIATHD-TCYLFQHALLDEQLGLLKPVL 164

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+ ++  V      +   L   + +++                L   L  +G   ++ ++
Sbjct: 165 EDENILKVGVGLRSDGQALTREWGINVTPR-----------LDLNWVLAQLGAGKEMGTR 213

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           ++     L  R  K +       +  P           Y   D             L  K
Sbjct: 214 QLVAT-LLQKRIDKPKKVTLSNWQQVPLTS----TQIVYAALDA---LAAQHCFSELIDK 265

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            +  +    ++      +   L   L    + +  
Sbjct: 266 LKPFY--LASLEANTQLLTQNLTVRLASYFEQDNE 298


>gi|254466659|ref|ZP_05080070.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I]
 gi|206687567|gb|EDZ48049.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium Y4I]
          Length = 241

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 42/189 (22%)

Query: 1   MATLFIDFETR-----SPIDLTKCGI-------------CKY--------AEDVCVILFA 34
           M  + +D ET      S   + + G               +Y        AE   V    
Sbjct: 1   MREIVLDTETTGFDPFSGDRIVEIGAVELYNHMPTGKTFHEYINPERSMPAEAFSVHGIG 60

Query: 35  FGF-------DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL- 86
                     +   V L D      + +   + ++++ +  V HN+ F+   L A  +  
Sbjct: 61  PDLLEPPQKPEPGAVTLRDKPVFAKIGRKFLDFVQDSRL--VIHNASFDMKFLNAELDWM 118

Query: 87  ---DIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHE 140
               +P+ + + TL +A  R  G P+ L A+     + +  +   G  L +        E
Sbjct: 119 GLPKLPMDQALDTLAMARKRFPGSPATLDALCRRFNIDNTNRTLHGALLDSEILADVYLE 178

Query: 141 CLYDRNKPN 149
            +  R    
Sbjct: 179 LIGGRQPDF 187


>gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 892

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/431 (9%), Positives = 104/431 (24%), Gaps = 93/431 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            +D E  S                   L      +    L D +    +  +L+    + 
Sbjct: 142 AVDTEQHSLRSFLGFTA----------LIQISTHEED-FLVDTIALHDVMSILRPVFSDP 190

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  V H +  +   L+   +  I +     T                 +A ++ S+   
Sbjct: 191 NICKVFHGADNDVIWLQR--DFHIYVVNMFDT----------------AKACEVLSKPQR 232

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVT--------VTREIFKRL 175
               L+   C          + +   +         Y + D          +T E+ +  
Sbjct: 233 SLAYLLETVC--GVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLA 290

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL----------------- 218
              SS   + ++     + R     + L     +                          
Sbjct: 291 TEDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNIS 350

Query: 219 ---DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-LTETTCQRVLSSNKK------ 268
              ++ +  L        R  ++   ++  +  +        TT + +  +         
Sbjct: 351 LNAEELVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATE 410

Query: 269 -----------LTPQAIQVFNNRMRASRSAVLKLNTLVEAM-----NSDGRLRGT---LQ 309
                        P      ++  +     + KL+ L+  +      ++G    +     
Sbjct: 411 SSPSLSSSVQSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYS 470

Query: 310 FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
            L   +T   S          +    + +                     +    R  + 
Sbjct: 471 LLVNFKTKLSSHSAP-----KQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCR--IY 523

Query: 370 ASEGKKLVVAD 380
           A++G+ L   D
Sbjct: 524 ANDGRLLCYCD 534


>gi|82702745|ref|YP_412311.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
 gi|82410810|gb|ABB74919.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 234

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 32/149 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFG---------------FDDHPVELW 45
           M  +FID ET       K G  +  E   V + +                  ++  +++ 
Sbjct: 1   MRQIFIDTETTGLEP--KLG-HRIIEIGAVEMMSRRLTGRRFHHYLNPEREIEEGALQVH 57

Query: 46  DCV-----HDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNL-DIP-----IHRW 93
                          V+ E LE      ++ HN+ F+   L     L ++P      H  
Sbjct: 58  GITSEFLLDKRKFADVVHELLEFIDGAELIMHNAAFDVAFLDHELGLANLPALCECCHSV 117

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSS 120
             TL +A+        +L A+ E  ++ +
Sbjct: 118 TDTLKMAKELFPGKRNSLDALCERYEVDN 146


>gi|242775502|ref|XP_002478657.1| 3'-5' exonuclease/helicase (Wrn), putative [Talaromyces stipitatus
            ATCC 10500]
 gi|218722276|gb|EED21694.1| 3'-5' exonuclease/helicase (Wrn), putative [Talaromyces stipitatus
            ATCC 10500]
          Length = 1028

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 67/246 (27%), Gaps = 52/246 (21%)

Query: 3    TLFIDFE------TRSPIDLTKCGICKYAEDVCVILFAFG-FDDHPVELWDCVHDPVMPQ 55
             L  D E      T S I  +   + + A +  + LF    F  + +         ++P 
Sbjct: 794  VLGFDIEWRPQAQTTSGIK-SNVSLIQIANEERIGLFHIALFRGNEIH-------DLVPP 845

Query: 56   VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             L++ LE+T    V  +   + + ++    ++                    +L  +   
Sbjct: 846  SLRQLLESTTTVKVGVSIKADCSRVRRHLGIN------------------TRSLFELSHL 887

Query: 116  LKLSSQKMEEGKELIAR-----------FCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
             KL      + K +  R                  +    ++       +    +Y   D
Sbjct: 888  YKLVKYGTTQPKLVDRRTVNLAQQVEEVLGLPLKKDGDVRKSDWTKPLDYAQV-QYAASD 946

Query: 165  VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                  + + LE        +  L          +       L +    E  + + E+  
Sbjct: 947  AYACICLHRTLEVKRKALTPIPPLPAFAELNLPIL-------LVEEDKPEVAEPEDEIVE 999

Query: 225  LTYGLV 230
            L+    
Sbjct: 1000 LSVRTE 1005


>gi|294998863|gb|ADF58177.1| DNA polymerase [Pseudomonas phage JG004]
          Length = 904

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 62/227 (27%), Gaps = 66/227 (29%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVT-IVAHN-SYFERTVLKACFNLDIPIHR------ 92
           PVE           +  K  +    +  +VAHN   F+   +K   ++D  I        
Sbjct: 105 PVEYIHLP-----LKEFKNYVLKRKIKRVVAHNMINFDLMSMKLVEDMDFTIGVEHRDGG 159

Query: 93  ---------------WICTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARF 133
                          +  TLV++++         +L  +       ++            
Sbjct: 160 LTTWSADTWMGKQVVFDDTLVISKTCNPDLFGGHSLDKLSRRAGGDTKID---------- 209

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE----------- 182
                H     R      +       YC  DV     ++  L+     +           
Sbjct: 210 --FRKHLAPDVRFLDFAAD----MLYYCIYDVKANTAVWHWLQDHEDYQLSDRDNYIKNW 263

Query: 183 -------QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                  +++  +      RG+ ++V L     + +D +  +    +
Sbjct: 264 LSPIQLEKKVAEIITYQEHRGFVLNVELCEKAVKDLDAKMEERRARV 310



 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 64/275 (23%), Gaps = 51/275 (18%)

Query: 249 LHLEDLTETTCQRV---LSSNKKLTPQAIQVFNN-----RMRA----------SRSAVLK 290
           L     T+   + +   L    +  P A  V        R  A                 
Sbjct: 483 LTNPSFTKGQEKEMCPDLERIAEQFPFAKDVIEYLTFKHRRSAILGGGMDWDEMEEGEEP 542

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
               + ++  DGR+       GA+ T R         N+PR +                 
Sbjct: 543 EKGYLASIRQDGRIPTPADTCGAA-TSRMKHRKV--ANVPRIT----------------- 582

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                   +    +R      +G   +  D   +EAR  +    +    K +     +  
Sbjct: 583 -------SLYGAELRELFGVEDGYFQIGYDFDSLEARKESAYCDQYDPTKEYCKSLMMEK 635

Query: 411 TTY-ARSFNVAPAQVTKDQRAI--GKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVK 467
                       +++   Q      K ++    Y   A      A T G +L T   +  
Sbjct: 636 PFDVHTMMAKRISEIIGRQFNRSPAKNVKYGCTYGAQAGKV---AKTIGADLQTGQLVFD 692

Query: 468 TNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
                     A       Q             G  
Sbjct: 693 AFWDAAFPLKALKDDLTKQWEANGKKYIVGVDGRR 727


>gi|308183650|ref|YP_003927777.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4]
 gi|308065835|gb|ADO07727.1| DNA polymerase III subunit epsilon [Helicobacter pylori PeCan4]
          Length = 287

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 41/143 (28%), Gaps = 36/143 (25%)

Query: 5   FIDFETRSPIDLTKCGICKYAED-----------------------VCVILFAFGFDDHP 41
           FID ET     L    +   A                           +   A+      
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAY----ED 130

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLV 98
                  H     Q L+  L N+    VAHN+ F+   L   F   +        +CTL 
Sbjct: 131 TLNAPSAH--EALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLD 186

Query: 99  LAR--SNGLPSALKAVGEALKLS 119
           L++     +  +L  + E L   
Sbjct: 187 LSKRTILSMRYSLSFLKELLGFG 209


>gi|71027523|ref|XP_763405.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350358|gb|EAN31122.1| hypothetical protein TP03_0385 [Theileria parva]
          Length = 996

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 44/179 (24%), Gaps = 30/179 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           +  L +D E              Y     + L           + D          L   
Sbjct: 491 IRVLSLDVE--------HHDTETYR--GFICLVQLST-PEENYIIDPFKIFGKMNKLNRL 539

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
             +  +  + H +  +   L+  FN+ +       T   A+          + E      
Sbjct: 540 TTDPKILKIMHGASNDVVWLQRDFNIFV--VNLFDTREAAKVLN-------LAEQ----- 585

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  +LI ++   + ++     +            +Y   D      ++  L+   
Sbjct: 586 ----SLAKLIQKYFNIKLNKRFQLSDWSKRPLD-AEMLDYACCDSHYLIPLYSALKDEI 639


>gi|261189615|ref|XP_002621218.1| DNA polymerase gamma [Ajellomyces dermatitidis SLH14081]
 gi|239591454|gb|EEQ74035.1| DNA polymerase gamma [Ajellomyces dermatitidis SLH14081]
          Length = 1126

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/368 (11%), Positives = 93/368 (25%), Gaps = 76/368 (20%)

Query: 298 MNSDGRLRGTL--QFLGASRTGRWSGCVFPPQN---LPRPSRSHEELDQIITHLPTSITS 352
           +++  R+R  L        R    S      +    LP+         + + +   + ++
Sbjct: 614 ISARDRIRSQLVVYHNDVERLKNKSISNPSFKQGYILPQIIPMGTITRRAVENTWLTASN 673

Query: 353 DPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTT 412
                  +   +++ V A  G   V AD+   E   +A + G+                 
Sbjct: 674 AKANR--VGSELKAMVTAPPGYVFVGADVDSEEL-WIASLVGDAQFQIHGGNAIGFMTLE 730

Query: 413 YARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
             ++        T       R   KV      Y  G K    +      +++        
Sbjct: 731 GTKAAGTDLHSKTAKILGISRNDAKVFNYGRIYGAGLKFAATLLRQFNPSMSEHETKQVA 790

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAF 528
               +E +      + + +N       + F+    E   +  R +               
Sbjct: 791 AKLYKETKGVRTNRKILSDNPFWRGGTESFVFNKLEEFAEQERPRTP------------- 837

Query: 529 EQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLT 588
              +       A  RR +        +                                 
Sbjct: 838 ---VLGAGITEALMRRFINKGSFMTSR--------------------------------- 861

Query: 589 REYTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEF 642
                        +Q+   D   +L   M   +        + +TVHDEI     + D++
Sbjct: 862 ---------INWAIQSSGVDYLHLLIISMDFLIRRFNLDARLAITVHDEIRYLVKEHDKY 912

Query: 643 NASMLYHL 650
            A+M   +
Sbjct: 913 RAAMALQI 920


>gi|326384419|ref|ZP_08206099.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395]
 gi|326196764|gb|EGD53958.1| 3'-5' exonuclease [Gordonia neofelifaecis NRRL B-59395]
          Length = 407

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 36/178 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E        +    +Y++   ++            L D +  P     L +AL+ 
Sbjct: 50  IAVDTE--------RASGYRYSQRAYLV--QLKRAGSGSFLIDPISHPDALSPLIDALDG 99

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKA-VGEALKLSSQ 121
            +   + H +  +   L+    L         T +  R   +P   L A V E L L   
Sbjct: 100 PE--WILHAADQDLPCLRE---LGFTPTTLFDTELAGRLLNIPKVNLAAMVAEFLHLGLA 154

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           K                     D ++    + W     Y   DV V  E+   +    
Sbjct: 155 K----------------GHGAADWSRRPLPDDW---LNYAALDVEVLVELRDAVADAL 193


>gi|315926553|gb|EFV05934.1| hypothetical protein CSQ_1891 [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 276

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 46/201 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 91  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 150

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 151 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 200

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL----DQTINDRG 196
                    +        EYC+ DV  T  +F + E + +   E  Y+            
Sbjct: 201 --------FYENKLEKIHEYCESDVLNTYMLFLKYELIKANVDEEDYVGFLSYMRDFLCA 252

Query: 197 YCVDVALAHTLNQIVDVERTK 217
              D +      +  + E +K
Sbjct: 253 KKSDRSYTEVFAKACESEISK 273


>gi|262212223|gb|ACY35728.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +           +        +   A  E  D  +  
Sbjct: 64  DKIGISRKLAKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 483 RWMQENHPEHAIEDLFIGTA 502
               +   E        G  
Sbjct: 124 LEAIKKASERGFIKALDGRK 143


>gi|63054429|ref|NP_588025.2| mitochondrial DNA polymerase [Schizosaccharomyces pombe 972h-]
 gi|20141418|sp|Q12704|DPOG_SCHPO RecName: Full=DNA polymerase gamma; AltName: Full=Mitochondrial DNA
           polymerase catalytic subunit
 gi|157310502|emb|CAB76231.2| mitochondrial DNA polymerase [Schizosaccharomyces pombe]
          Length = 1018

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 71/283 (25%), Gaps = 63/283 (22%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +   +++ + A +G   V AD+   E   +  + G+        T   +      +S   
Sbjct: 661 LGSELKAMIRAPDGYTFVGADVDSEEL-WIVALMGDSQFRLHGATALGMMTLEGKKSEGT 719

Query: 420 APAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
                T       R   KV      Y  G K    +       L T              
Sbjct: 720 DLHSKTAAILGVSRDSAKVFNYGRLYGAGLKHTTLLLMQMNPTLKTAEAKELAKKLYAST 779

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
           +  ++      +                            +++             +E  
Sbjct: 780 KGVKSKMSKRLQEMG-----------------------LPKLTFWSQGTESFVFNKLE-- 814

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                                  +  LPS R+     +    +     + +   + ++  
Sbjct: 815 ----------------------AMAQLPSPRT---PVLDAGITQ--ALSSKNLSKNSFMT 847

Query: 596 KLTENIVQAVSRD---ILAEGMMNATKA---GYDIVLTVHDEI 632
                 +Q+ + D   +L   M +  K       + LTVHDE+
Sbjct: 848 SRVNWAIQSSAVDYLHLLLVSMNHLIKKYYLEARLSLTVHDEV 890


>gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 234

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 44/164 (26%), Gaps = 40/164 (24%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  +F+D ET                       +T      Y   D  +           
Sbjct: 1   MRQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPDREI-----DAGAQE 55

Query: 42  VELW------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH---- 91
           V         D      +     + ++++++ I  HN+ F+   L A             
Sbjct: 56  VHGITLEFLQDKPRFADVVGEFLDFVQDSELII--HNAPFDVGFLNAELGRIEKPGIESV 113

Query: 92  --RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
               I TL +A+         L A+     + + K      L+ 
Sbjct: 114 ASGIIDTLKMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLD 157


>gi|187779653|ref|ZP_02996126.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC
           15579]
 gi|187773278|gb|EDU37080.1| hypothetical protein CLOSPO_03249 [Clostridium sporogenes ATCC
           15579]
          Length = 195

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 25/122 (20%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVILFA----FGFD--DHPVELWDCVH 49
           M  +FID ET          LT C     ++    + F+    F  D  +   E      
Sbjct: 1   MKKIFIDTETTGLEPGEIIQLTYCVCDINSKGEERVSFSKNFFFDVDYIEESAEAIHGFS 60

Query: 50  DPVMP-----QVLKEALEN-----TDVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
              +      +  K+          D   +AHN  F+R           +++     + C
Sbjct: 61  VEKLKILSNGKKFKDLASEISSDLKDGIFIAHNVNFDRKFVTAEFNRLDDINWIPKEFFC 120

Query: 96  TL 97
           T+
Sbjct: 121 TM 122


>gi|325527245|gb|EGD04625.1| DNA polymerase III subunit epsilon [Burkholderia sp. TJI49]
          Length = 243

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 46/163 (28%), Gaps = 38/163 (23%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-----DVCVILFAFGF 37
           M  + +D ET                       LT   +  Y       D      A   
Sbjct: 1   MRQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPG----ALAV 56

Query: 38  DDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI----- 90
                E   D      +   +++ +      ++ HN+ F+   L      L +P      
Sbjct: 57  HGLTTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLGLPPFTEHC 114

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              I TLV A+        +L A+ +   +S+        L+ 
Sbjct: 115 GGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLD 157


>gi|284046840|ref|YP_003397180.1| ribonuclease D [Conexibacter woesei DSM 14684]
 gi|283951061|gb|ADB53805.1| Ribonuclease D [Conexibacter woesei DSM 14684]
          Length = 396

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 64/276 (23%), Gaps = 38/276 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV------ELWDCVHDPVMPQVL 57
           L ID E             +Y     + L     DD          L+D          L
Sbjct: 28  LGIDTE--------FMSEGRYR--ALLCLVQVAVDDADAPNGVRIALFDPFDKLDF-APL 76

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              L + ++ IV H +  +  +++        +     T V A            G    
Sbjct: 77  AAVLADPEIEIVLHAARQDVAIMRRA--WRTDVREVFDTQVAA-------GFAGYGAQTG 127

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             +     G  L  R  K  ++     R              Y   DV    ++   L  
Sbjct: 128 YGNL---LGAALGQRVGKTASYTRWDARPLT------EEQLSYAAEDVLHLLQLSDALHD 178

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
             S    L +  +         D     T  + +        +             R  +
Sbjct: 179 KLSAHGRLQWAQEECRRMDEATDERDPETAYERLPRSGQLDPRARAVAREVAAWRERTAQ 238

Query: 238 KLKTWLFLETGLH---LEDLTETTCQRVLSSNKKLT 270
           +    +               + +  R L   + L 
Sbjct: 239 QEDKPVGTILPDPALVEIAKRKPSSPRELEQIRGLH 274


>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
 gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
           haemolyticus JCSC1435]
          Length = 1438

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 53/228 (23%), Gaps = 33/228 (14%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 483 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGLP---SALKAVGEALKLS--------SQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                    L  + +   +                   I    + +       ++     
Sbjct: 541 INTEYGKHGLNFLAKKYGVELTQHHRAIYDTESTAYIFIKMVQQMKELGVTNHKDINQKL 600

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQTINDRGYCVDVALAHTLN-- 208
                +         VT  +    +       ++          R   +  +L +     
Sbjct: 601 SNEDAYKR--ARPTHVTLIVQ--TQEGLKNLFKIVSASLVKYYYRTPRIPRSLLNEYREG 656

Query: 209 ----------QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
                     ++      +   E+E +            KL   L   
Sbjct: 657 ILVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPKLYQDLIDR 704


>gi|332525346|ref|ZP_08401511.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
 gi|332108620|gb|EGJ09844.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
          Length = 234

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 38/152 (25%)

Query: 1   MATLFIDFETR--SPID----------------LTKCGICKYAEDVCVILFAFGFDDHPV 42
           M  +F+D ET   S +D                L+   +  Y             +   V
Sbjct: 1   MRQIFLDTETTGLSAVDGDRLVEVGCIEMLNRRLSGRTLHHYLNPER------SSNPEAV 54

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTI------VAHNSYFERTVLKACFNLDIPIHRWI-- 94
           ++     + +  + L  A+ +  +        + HN+ F+   L A              
Sbjct: 55  KVHGLTDEFLADKPLFAAVADEFIEFVRDAELIIHNAAFDVGFLDAELTRLGKPRLVELG 114

Query: 95  ----CTLVLARSNGLPS--ALKAVGEALKLSS 120
                +LV+AR        +L A+ + L++ +
Sbjct: 115 CTITDSLVMARQLFPGKANSLDALCKRLEVDN 146


>gi|320332653|ref|YP_004169364.1| DNA polymerase III subunit epsilon [Deinococcus maricopensis DSM
           21211]
 gi|319753942|gb|ADV65699.1| DNA polymerase III, epsilon subunit [Deinococcus maricopensis DSM
           21211]
          Length = 174

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 47/154 (30%), Gaps = 42/154 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-----------------E 43
           M  +  D ET                D  V + A    +  V                  
Sbjct: 1   MEYVVFDLETTGLSP---------ERDAIVEIGAIRIRNGEVLEDDTFHTLVNPERDIPW 51

Query: 44  LWDCVHD---------PVMPQVLKEALE-NTDVTIVAHNSYFERTVLKACF---NLDIPI 90
               VH          P + + L   L+      +VAHN+ F+   ++A      L+   
Sbjct: 52  YVSRVHGIRNAHVASAPRITEALPAFLQYAGTTPVVAHNAAFDTGFIRAAAARQGLEWRP 111

Query: 91  HRWICTLVLARSNGL---PSALKAVGEALKLSSQ 121
            R ICTL L+R          L A+ + L L  +
Sbjct: 112 QREICTLQLSRRAFPREKSHKLDALAQRLGLLQE 145


>gi|294788746|ref|ZP_06753987.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
           29453]
 gi|294483228|gb|EFG30914.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
           29453]
          Length = 272

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 53/185 (28%), Gaps = 33/185 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCV-------------ILF---------AFGFDD 39
             + +D ET            +  E   +             +L          A    +
Sbjct: 8   RQIILDTETTGLYANAAENPDRLIEFAGLEMMNRQLTGRNLHLLIHPQREISEEATAVHN 67

Query: 40  HP-VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP----IHRW 93
               +L D      + Q + + +      ++ HN+ F+   L      + +P    I   
Sbjct: 68  ITLSQLVDKPIFAQVAQQIFDFI--KGAELIIHNAKFDVGFLNAEFARVGLPNVETICEI 125

Query: 94  ICTLVLAR--SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
             TL +A+   +G  ++L A+   L +   K      LI      E +  +         
Sbjct: 126 TDTLEMAKNLYHGQKNSLDALCNRLGVDRSKRVFHGALIDCELLSEVYLGMTRGQFSLMA 185

Query: 152 EAWRL 156
             W  
Sbjct: 186 -DWED 189


>gi|319405613|emb|CBI79236.1| Ribonuclease D [Bartonella sp. AR 15-3]
          Length = 383

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 51/165 (30%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D  + L D +   +  Q   + + +  +  V H +  +  ++       
Sbjct: 37  PQLCLIQVASSDVTI-LIDPMAQDINLQPFFDLMIDKKIVKVFHAARQDIEII-YHLGGV 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           IP      T V     G   ++       + +   +++        C+  +         
Sbjct: 95  IP-SPLFDTQVAGSICGFGDSISYDQIVQRCTGHHLDKSSRFTDWSCRPLS--------- 144

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                       Y   DVT  RE++  L+    +++   +++  +
Sbjct: 145 -------EKQLLYALADVTYLREVYLVLKKQLEEKKRTHWMNDEM 182


>gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
 gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
          Length = 281

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 38/144 (26%)

Query: 5   FIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--- 57
           F+D ET         +T+ G+ +   D                +      P   Q L   
Sbjct: 47  FVDLETTGGRPGLDRITEVGVIEVDRDG--------VRRWSTLVDPLQPIPPFVQQLTGI 98

Query: 58  ----------KEALENT------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV 98
                      +AL             +AHN+ F+   LK  F    +       +CT+ 
Sbjct: 99  TDAMVRGAPTFDALAAELARRLDGKLFIAHNARFDHGFLKKAFEQIGIRFDP-DVLCTVR 157

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           L+R+         L A+ + L LS
Sbjct: 158 LSRALFPRESRHGLDALAQRLDLS 181


>gi|308495624|ref|XP_003110000.1| hypothetical protein CRE_06484 [Caenorhabditis remanei]
 gi|308244837|gb|EFO88789.1| hypothetical protein CRE_06484 [Caenorhabditis remanei]
          Length = 1090

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 99/371 (26%), Gaps = 64/371 (17%)

Query: 338  ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA----------- 386
             + +   H      ++     +I   +++ V A EG +LV AD+   E            
Sbjct: 648  TVSRRSVHKLWVTLTNQSTGHVIGTGIKAMVQAPEGFRLVGADVDSQEQWLAALYGDASA 707

Query: 387  -RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGA 445
             + L        K            +      +V  A   K  R   KV+  A  Y  G 
Sbjct: 708  EKRLPLELRVPGKTAFSNMMLAGSKSDNTDLHSV-VANQLKISRNHAKVLNYARLYGSGE 766

Query: 446  ----KAFQKMASTTGLNLNTFAHLVKT------NSAPEEWEDAENFCRWMQENHPEHAIE 495
                K   ++     ++    A  +            +       F     E   +    
Sbjct: 767  THAGKHLMRIGGMKQIDAEATAAQLFKLTKGETAKYMKVDLKMNCFVDKYIEETAKDPDS 826

Query: 496  DLF---------------IGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKA--- 537
                                +     +  +  K+S +  L          +I        
Sbjct: 827  SKILTIDGVYYMPSYSSQFSSETVEFENWFLSKYSSLFNLNESHQDNLIYSIYENAEDQR 886

Query: 538  ---------------IIARKRRDVPLVYMKKDKNNLILMLPSGR-SLVYRDVGNNRSYLN 581
                             +    D+    +     + +  LP G     Y D    RS +N
Sbjct: 887  KLFVGGYESSTFNFLETSAAAHDLRTPILGCQIADSLGKLPEGTPDSAYFDRKYKRSVMN 946

Query: 582  TTTRQLTREYTYGGKLTENIVQAVSRD------ILAEGMMNATKAGYDIVLTVHDEIVCE 635
              +R++             IVQ+ + D      I  + + +  K     V+++HDE+   
Sbjct: 947  WVSRKIK-ISYNKFSKIIQIVQSSAVDFLHLLLISMQWLCDIYKIDARFVISIHDEVRYM 1005

Query: 636  TPDTDEFNASM 646
              + D    ++
Sbjct: 1006 CKEKDAPRLAL 1016



 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 45/159 (28%), Gaps = 36/159 (22%)

Query: 64  TDVTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL------ 116
            +  ++ HN  F+R   L+A    +    R++ T+ ++        +    +AL      
Sbjct: 193 KEKIVIGHNVGFDRARCLEAYQKENGSKIRFMDTMSMS---IPMFGMADHQQALFGMYDT 249

Query: 117 ---------------KLSSQKMEEGKELIARFCKGET----HECLYDRNKPNHREAWR-- 155
                          ++S   +    E    F K +      E    +     +E     
Sbjct: 250 DNNEANSDWVNTWKDRVSKNSLVAVHEHFYPFRKLQKHRDGDESKEKQRSAFVKEPIENI 309

Query: 156 -----LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
                    YC  D  +  EI+  L P   K        
Sbjct: 310 RLKFQKLMTYCARDNILCAEIYFGLWPEFVKRFPHPATL 348


>gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 244

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 43/155 (27%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYAE---DVC-----VILFA 34
           M  + +D ET          +                   +Y +   D       V    
Sbjct: 1   MRQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLD 87
             F               +       +      ++ HN+ F+   L          +   
Sbjct: 61  LEFLADK----PLF--GEVVDEFLAYI--DGAELIIHNAAFDLGFLDNELSLLGDNYGRI 112

Query: 88  IPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS 120
           +     + TL++A  R  G  ++L A+ + L + +
Sbjct: 113 VERATVVDTLMMARERYPGQRNSLDALCKRLGVDN 147


>gi|262342131|gb|ACY54576.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 38/146 (26%), Gaps = 13/146 (8%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R     + G+ +V ADL+GIE R+LA          A                +   
Sbjct: 10  SEFRKLFQPTPGQIMVGADLSGIELRMLAHYL-------ARFDRGVYADILLHGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHL---VKTNSAPEEWEDA 478
           A      R   K +  A  Y  G         +   +L+         +  +A  E  D 
Sbjct: 63  ADKIGISRRAVKTVTYAFLYGAGDAKI---GLSYDSSLSPTRAKSKGKEIRTAFVEAIDG 119

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACE 504
                   +   E            +
Sbjct: 120 LAQLLEAIKTASEKGYVRSIDTRKIK 145


>gi|229472477|gb|ACQ72753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 42/144 (29%), Gaps = 13/144 (9%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+++V ADL+G+E R LA          A                +   
Sbjct: 10  PEFRKLFRASPGQRMVGADLSGVELRCLAHYL-------ARYDEGRYREVLLNDDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +   +L+      K     + + DA + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDQKI---GLSYDKSLSPNKAKAKGKEIRQAYIDAIDG 119

Query: 482 CRWM---QENHPEHAIEDLFIGTA 502
              +    +   E           
Sbjct: 120 LDKLLKDIKQASERGYVRAIDKRK 143


>gi|147856691|emb|CAN79186.1| hypothetical protein VITISV_035853 [Vitis vinifera]
          Length = 951

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 13/95 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E  S                   L      +    L D +       VL+   
Sbjct: 133 RVFAVDTEQHSLRSFLGFTA----------LIQISTQNED-YLVDTIALHDTLDVLQPVF 181

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
            N  +  V H +  +   L+   +  I +     T
Sbjct: 182 ANPSICKVFHGADNDVLWLQR--DFHIXVVNLFDT 214


>gi|308062811|gb|ADO04699.1| DNA polymerase III subunit epsilon [Helicobacter pylori Cuz20]
          Length = 287

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     L    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 193 LSMRYSLSFLKELLGFG 209


>gi|322796178|gb|EFZ18754.1| hypothetical protein SINV_08354 [Solenopsis invicta]
          Length = 1253

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 98/337 (29%), Gaps = 40/337 (11%)

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            +P+   S     + +   PT +T+    ++ I   +R  + A  G  +V AD+   E  +
Sbjct: 856  IPQVVVSGTLTRRAVE--PTWMTASNAHVERIGSELRCMIQAPPGYNIVGADVDSQELWI 913

Query: 389  LA-----WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
             +                         +      +V  A+     R   KV+  A  Y  
Sbjct: 914  ASVIGDAHYKRIHGATPFGWMTLIGTKSNGTDMHSV-TAKAIGISRDHAKVINYARIYGA 972

Query: 444  GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            G K  +++      ++     + K+       +  + +     E   +      +  +  
Sbjct: 973  GQKFAERLLKQFNPSMTDAEAISKSRKMFALTKGKKIYRLKT-EFINDDLQNISYTSSQA 1031

Query: 504  ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
              + K   +    + +    +  + E  + N    IA     +      +    L +   
Sbjct: 1032 YHIAKLHGKGLQDIFQKSEWIDGS-ESAMFNRLEQIAGSEHPITPFLNARLSRALEITNT 1090

Query: 564  SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNATKA 620
                                                 +VQ+ + D   ++   M    K 
Sbjct: 1091 DDDDKFLP------------------------TKINWVVQSGAVDFLHLMLVSMRWLMKD 1126

Query: 621  GYDIVLTVHDEIVCETPDTDEFNAS---MLYHLMTSN 654
                 L+ HDE+    P   ++NA+    + +LMT  
Sbjct: 1127 NARFCLSFHDEVRYLVPSRYKYNAALAMHVTNLMTRA 1163



 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTL--------VLARSNGLPSALKAVGEAL- 116
             IV HN  ++R+ +K  + L+    R++ T+        + +    L  + KA  E   
Sbjct: 356 KIIVGHNVSYDRSRIKEQYWLNCTGTRFLDTMSLHVCVSGLNSYQRSLLLSKKANAEKEI 415

Query: 117 ---KLSSQKMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                S   + E  +L        E  +        + R+ + +   YC  D   T  I 
Sbjct: 416 WLPNTSLNSLVEVHKLYCGYEISKEGRDLFVKGTIEDIRDNFDMLMSYCASDTIATHNIL 475

Query: 173 KRLEPLSSKEQELWYLDQ 190
           + L PL  +         
Sbjct: 476 RNLFPLFQERFPHPVTLA 493


>gi|315221792|ref|ZP_07863704.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           anginosus F0211]
 gi|315189025|gb|EFU22728.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           anginosus F0211]
          Length = 819

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 30/231 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         ++   R   T+ LA+       
Sbjct: 74  QVAREIYELIEDA--IFVAHNVKFDANLLAEALFWEGFELVTPRV-DTVELAQVFFPTFE 130

Query: 107 -SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY- 160
              L  + E L +  +     + +       F K +       +    +   +     Y 
Sbjct: 131 KYNLGILCEQLDIPLKHAHTALADASATATLFLKIQEKIQKLPKELVEYLLKFSDSLIYE 190

Query: 161 ---CKGDV-----TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                 D       +T            K Q ++        +   +     H +N +  
Sbjct: 191 SRLAIEDAFNQMSDITCR-------DLMKWQGIFLRKSKKIQKARKLSKNFTHNINLLDL 243

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
            ER + D+    +   L S      + +T L    G  L  L   T +++L
Sbjct: 244 EERKEQDEFAHDVEQALKSQQPSFLQAQTGLGKTYGYLLPAL-AQTSKQIL 293


>gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
          Length = 486

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 29/171 (16%)

Query: 5   FIDFETRSPID----LTKCGICKYAEDVCVIL-----------FAFGFDDHPVELWDCVH 49
           F+D ET         +T+ GI ++     V+             +   ++      + V 
Sbjct: 15  FLDIETTGGNSARDRITEIGI-RFWRAGEVVGEWQTLLNPETRISPFIENFTGISNEMVA 73

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
           D  + + + + LE        VAHN+ F+   +K         +   + +CT+ L+R   
Sbjct: 74  DAPLFEEVADELEAQLKGKVFVAHNARFDYGFIKSEFRRLG-RLFSAKVLCTVKLSRRLY 132

Query: 105 LP---SALKAVGEALKLS----SQKMEEGKELIARFCKGETHECLYDRNKP 148
                  + A+     L+     + M +   ++A F    + +     +K 
Sbjct: 133 PEFRRHNMDALIARHGLARVQRHRAMGDVSAMLAFFEHARSEKGDGKFDKA 183


>gi|282849129|ref|ZP_06258514.1| DNA polymerase III subunit epsilon domain protein [Veillonella
           parvula ATCC 17745]
 gi|282580833|gb|EFB86231.1| DNA polymerase III subunit epsilon domain protein [Veillonella
           parvula ATCC 17745]
          Length = 209

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 22/140 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKY-AEDVCVILFAFG--------FDDH--PVELW---DC 47
             + +DFET +    + C +     +D  +   A+         FDD    +      D 
Sbjct: 3   DFVALDFETANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPKDV 62

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
           +H+    Q+     EN      +VAHN+ F+  VL+A    + +  P   + CT+ L+R+
Sbjct: 63  LHEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKLSRA 122

Query: 103 NGL---PSALKAVGEALKLS 119
                    L  +   + + 
Sbjct: 123 VWPDLVNHKLNTMAAYIGVE 142


>gi|163844775|ref|YP_001622430.1| DNA polymerase III epsilon subunit family exonuclease [Brucella
           suis ATCC 23445]
 gi|163675498|gb|ABY39608.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           suis ATCC 23445]
          Length = 224

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 73

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 74  MTCYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 130

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 131 DGARRLWRGDSTKLDHCLAKIGL 153


>gi|148652873|ref|YP_001279966.1| exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
           PRwf-1]
 gi|148571957|gb|ABQ94016.1| Exodeoxyribonuclease X [Psychrobacter sp. PRwf-1]
          Length = 237

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 42/151 (27%), Gaps = 38/151 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M T  +D ET   +D        Y+            ++  +E+            LK  
Sbjct: 1   MTTYILDTETTGLVD-PHMTEAAYSI--------IAINNAKIEVIQAPRSKRF-NPLKPI 50

Query: 61  ---------LENTDVT----------------IVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    + + DV                 +V HN  ++  VLK       P  + IC
Sbjct: 51  SLGSMATSHICDEDVAHEPPHTEFRLPNSVEYLVGHNIDYDMAVLKNAGVTHTP--KLIC 108

Query: 96  TLVLARSNGLPS-ALKAVGEALKLSSQKMEE 125
           T  ++        + K V        Q   E
Sbjct: 109 TKAMSSYLLPTLESHKLVSLLYHFHRQVARE 139


>gi|91792982|ref|YP_562633.1| ribonuclease D [Shewanella denitrificans OS217]
 gi|91714984|gb|ABE54910.1| ribonuclease D [Shewanella denitrificans OS217]
          Length = 371

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 83/306 (27%), Gaps = 47/306 (15%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           L +D E     T                   + L    FD   + L D V    +     
Sbjct: 26  LVLDTEFVRTRTYY---------------ARLGLIQ-AFDGKTLALIDPVAIEDL-SPFW 68

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L    +T + H+   +  V                + + A   GL   L         
Sbjct: 69  QLLTAPHITKLVHSCSEDLEVFAHYG--HCQPAPLFDSQIAASLAGLGHGL--------- 117

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                  G   + + C     +    R     R       +Y   DV    +++  L   
Sbjct: 118 -------GYAKLVQECLSVEIDKGESRTDWMKRPLTDAQLQYAANDVFYLYKLYPLLLEK 170

Query: 179 SSKEQELWYLDQT-INDRGYCV---DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            +    + +L +         +   D   A+   +       +    L+ L    +  + 
Sbjct: 171 LNANGRVEWLLEEGQRMTQDRLSLPDGESAYIKVKNAFQLLPEQLAYLKVLGKWRLEKAL 230

Query: 235 CLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNT 293
             +    ++  +  L  L     ++    L+   +LT Q  ++   R          L+ 
Sbjct: 231 AKDLALGFVVKDHALIALAKKQPSSVAE-LNRMTELTEQEKRIHG-RDLIRVLTTADLDN 288

Query: 294 LVEAMN 299
           L E ++
Sbjct: 289 LPEQLD 294


>gi|321254177|ref|XP_003192989.1| exosome complex exonuclease RRP6 [Cryptococcus gattii WM276]
 gi|317459458|gb|ADV21202.1| Exosome complex exonuclease RRP6 (Ribosomal RNA processing protein
           6), putative [Cryptococcus gattii WM276]
          Length = 851

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 45/180 (25%), Gaps = 32/180 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKE 59
             + +D E           +  Y+      L      ++   + D +     +      +
Sbjct: 172 KEIAVDLE--------HHDMRSYS--GFTCLIQISTREND-WVVDTLSLRKEIQQDKFGD 220

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
              +  V  V H +  +   L+   + +I +     T                   L + 
Sbjct: 221 VFTDPTVVKVFHGADSDIVWLQR--DFEIFVVNLFDT-------------YNACVVLGMP 265

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            + +     L+  +C  E  +     +             Y + D      I+  L    
Sbjct: 266 QRSLS---ALLQHYCNFEADKRYQRADWRIRPLP-DGMLNYARSDTHFLLFIYDNLRNAL 321


>gi|258621252|ref|ZP_05716286.1| ribonuclease D [Vibrio mimicus VM573]
 gi|258586640|gb|EEW11355.1| ribonuclease D [Vibrio mimicus VM573]
          Length = 373

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 19/157 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 47  FDGENLSLIDPTVINEMT-PFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                   +L     K E+      R           
Sbjct: 104 QIMAAFLGYGLSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DK 147

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
             EY   DV     ++++L    +         Q   
Sbjct: 148 QLEYAAADVFYLLPMYEKLLERVTHAGWWEAALQESE 184


>gi|217976404|ref|YP_002360551.1| ribonuclease D [Methylocella silvestris BL2]
 gi|217501780|gb|ACK49189.1| ribonuclease D [Methylocella silvestris BL2]
          Length = 405

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 38/141 (26%), Gaps = 18/141 (12%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
                 D +   +    L E + +  V  V H +  +  ++       I       T V 
Sbjct: 54  DEAVAVDALASGLDLAPLFELMADPAVVKVFHAARQDLEIVWNLA--KIIPAPLFDTQVA 111

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           A   G       V               +L+   CK    +     +            +
Sbjct: 112 AMVCGFG---DQVS------------YGDLVQTVCKVSLDKSSRFTDWSRRPLLPAQV-D 155

Query: 160 YCKGDVTVTREIFKRLEPLSS 180
           Y   DVT  R+I+  L+    
Sbjct: 156 YAIADVTYLRDIYAILQDKLK 176


>gi|323453102|gb|EGB08974.1| hypothetical protein AURANDRAFT_63530 [Aureococcus anophagefferens]
          Length = 549

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 12/105 (11%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       Y    C++  +    D    + D +      + L  A  + ++  V H +
Sbjct: 231 VDLEAHAEHSYESIACLVQISTADVD---YVVDALALRFELRALAPAFADPNIRKVFH-A 286

Query: 74  --YFERTVLKACFNLDIPIHRWICTL----VLARSNGLPSALKAV 112
               +   L+  F + +       T       AR  G P  L A+
Sbjct: 287 CQGVDIPRLQRDFGIFV--VNVFDTQEAARCAARVLGAPLGLVAL 329


>gi|262368670|ref|ZP_06061999.1| ribonuclease HI [Acinetobacter johnsonii SH046]
 gi|262316348|gb|EEY97386.1| ribonuclease HI [Acinetobacter johnsonii SH046]
          Length = 474

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 62/230 (26%), Gaps = 40/230 (17%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDDHPVE 43
             L +D ET        D              LT   I  Y      +      D   V 
Sbjct: 247 RQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINPKKPVG-----DSENVH 301

Query: 44  LW--DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDI-PIHRWI 94
               D + D  + Q + + L        I+AHN+ F+   L    K    + +  +    
Sbjct: 302 GISDDFLKDKPLYQEIADTLFAYLKGAEIIAHNASFDMNFLDMEFKRAGFVALSEVCAVT 361

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL +A+S       +L A+    ++  +       L+      + +  +         +
Sbjct: 362 DTLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILADVYLAMTGGQVSFDMD 421

Query: 153 AWRLFGEYCK----GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
           A     +         + +   + +         +      Q     G  
Sbjct: 422 ALSHSEQQNGQSQRQALDIELAVIQPSAEELEAHETWVK--QYQEKHGTP 469


>gi|194364623|ref|YP_002027233.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           R551-3]
 gi|194347427|gb|ACF50550.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 243

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 39/155 (25%), Gaps = 43/155 (27%)

Query: 1   MATLFIDFETRSP-----IDLTKCG-------------------ICKYAEDV--CVILFA 34
           M  + +D ET          + + G                        E     V    
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLD 87
             F D      D      +       +      ++ HN+ F+   L          +   
Sbjct: 61  LEFLD------DKPDFAQIADEFLAFI--DGAELIIHNAAFDLGFLDNELSLLGPQYGKI 112

Query: 88  IPIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
                 I TLV+AR        +L A+   L + +
Sbjct: 113 TDRCTVIDTLVMARERFPGQRNSLDALCRRLGVDN 147


>gi|77464814|ref|YP_354318.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|221640733|ref|YP_002526995.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|77389232|gb|ABA80417.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Rhodobacter sphaeroides 2.4.1]
 gi|221161514|gb|ACM02494.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides KD131]
          Length = 229

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 50/178 (28%), Gaps = 33/178 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  + +D ET            +  E   V LF                +  MP    E 
Sbjct: 1   MREIVLDTETTGFEPSEG---HRIVEIGAVELFNH-MPTGRTYHQYINPERPMPNEAFEV 56

Query: 61  -------LENT---------------DVTIVAHNSYFERTVLKACFNL----DIPIHRWI 94
                  L +                +  +V HN+ F+   L           +   + +
Sbjct: 57  HGLGDEFLRDKPVFAAIGRAFLDFVGEARLVIHNAAFDMKFLNFELGRAGLPRLAPDQAL 116

Query: 95  CTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPN 149
            TL LA  R  G P+ L A+     + +  + + G  L +        E +  R    
Sbjct: 117 DTLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIGGRQPDF 174


>gi|126463657|ref|YP_001044771.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105321|gb|ABN77999.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 229

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 50/178 (28%), Gaps = 33/178 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  + +D ET            +  E   V LF                +  MP    E 
Sbjct: 1   MREIVLDTETTGFEPSEG---HRIVEIGAVELFNH-MPTGRTYHQYINPERPMPNEAFEV 56

Query: 61  -------LENT---------------DVTIVAHNSYFERTVLKACFNL----DIPIHRWI 94
                  L +                +  +V HN+ F+   L           +   + +
Sbjct: 57  HGLGDEFLRDKPVFAAIGRAFLDFVGEARLVIHNAAFDMKFLNFELGRSGLPRLAPDQAL 116

Query: 95  CTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPN 149
            TL LA  R  G P+ L A+     + +  + + G  L +        E +  R    
Sbjct: 117 DTLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIGGRQPDF 174


>gi|317486188|ref|ZP_07945025.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316922557|gb|EFV43806.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 1021

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 54/175 (30%), Gaps = 29/175 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDPVMPQVLKEA 60
             + +D ETR      + G         ++  +     D   + +       +P + +  
Sbjct: 847 RFMVLDVETRRSA--AEVGG---WHRADLMGVSVAVLYDSKGDCFTEYEQEDLPAMFERL 901

Query: 61  LENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLA--RSNGLPSALKAVGEALK 117
                  ++  NS  F+  VL+     D+     +  +++   +      +L  +  A  
Sbjct: 902 --REAGLVIGFNSSRFDYAVLQPFAGYDLRSLPTLD-MLVEVKKRLSYRVSLDNLARA-- 956

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                              ++ + +                EYC+ DV +TR+++
Sbjct: 957 --------------TLNAPKSADGMQALQW-WKEGNLASIAEYCRKDVEITRDVY 996


>gi|83749368|ref|ZP_00946363.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
 gi|207742873|ref|YP_002259265.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
           IPO1609]
 gi|83723945|gb|EAP71128.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
 gi|206594267|emb|CAQ61194.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
           IPO1609]
          Length = 242

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 48/159 (30%), Gaps = 30/159 (18%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y   +  +   A       
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPEREIDPGAMAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI---PIHRWI 94
            E   D      +   +++ ++  +  I  HN+ F+   L        L      +   I
Sbjct: 61  NEFVADKPKFAEVVAEIRDYVQGAEAII--HNAAFDLGFLDMEFRRLGLPSFREHLDGHI 118

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL+ AR        +L A+ + L +S+        L+ 
Sbjct: 119 DTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLD 157


>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
           43183]
 gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
           43183]
          Length = 328

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 16/102 (15%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NL 86
           D  PV +     +          + + + E L  +   +VAHN+ F+   L   F    L
Sbjct: 60  DPGPVHIHGLTPERLRGAPTFDRVAERVAELL--SGRVMVAHNAAFDYAFLAHEFGRAGL 117

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEE 125
            +P+ + +CTL L R  GLP     L  +     +   +  +
Sbjct: 118 HLPVEQRLCTLALGRRIGLPTPDLRLSTLAAHYGVPQHRAHD 159


>gi|242777655|ref|XP_002479078.1| DNA polymerase gamma [Talaromyces stipitatus ATCC 10500]
 gi|218722697|gb|EED22115.1| DNA polymerase gamma [Talaromyces stipitatus ATCC 10500]
          Length = 1129

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 77/325 (23%), Gaps = 75/325 (23%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ + A  G   V AD+   E
Sbjct: 668 PQVIPMGTITRRAVENTWLTASNAKAN------RVGSELKAMIKAPPGYVFVGADVDSQE 721

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                  +++        T       R   KV      Y
Sbjct: 722 L-WIASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDLHSRTASILGISRNDAKVFNYGRIY 780

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +       L         +   +E +      + + +        + F+  
Sbjct: 781 GAGLKFASTLLRQFNPTLTEKETSQIASKLYKETKGTRTTRKILNDGPFWRGGTESFVFN 840

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +   +                      A  RR +        +      
Sbjct: 841 KLEEFAEQERPRTPAL----------------GAGITEALMRRFINKGSFMTSR------ 878

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 879 ------------------------------------INWAIQSSGVDYLHLLITAMDFLI 902

Query: 616 NATKAGYDIVLTVHDEIVCETPDTD 640
                   + +TVHDEI     + D
Sbjct: 903 RRFNIDARLAITVHDEIRYLVKEED 927


>gi|495452|gb|AAA56883.1| DNA polymerase [Bacillus phage SP82]
          Length = 86

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 22/104 (21%)

Query: 281 MRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELD 340
            +A+      ++ L   ++ D  +  +    G + TGR S      Q  PR         
Sbjct: 3   RKANHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRK-------- 53

Query: 341 QIITHLPTSITSDPDPLQIISDCVRSCVIAS--EGKKLVVADLA 382
                       +   L   +  ++    +   +   +V  D +
Sbjct: 54  -----------VNTPTLFQYNHEIKKMFNSRFGDDGVIVQFDYS 86


>gi|256372386|ref|YP_003110210.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008970|gb|ACU54537.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
          Length = 396

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 58/219 (26%), Gaps = 54/219 (24%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + ID E     T                   + L     D   V L D      +   L 
Sbjct: 43  IAIDTEFHRERTYY---------------PRLALVQVAID-RRVWLID-----PLRVDLS 81

Query: 59  EALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKA-VGEA 115
                  +V +V H +  +  +++          R   T V     G    +L A +   
Sbjct: 82  PIAAWFDEVELVFHAADQDLEIIERAVG--ARPRRIFDTQVAGGFLGAGHASLGALLDRY 139

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +S  K E   + + R  +                        Y   DV     +  RL
Sbjct: 140 LGVSISKAERTSDWLRRPLEPGQ-------------------LAYAANDVRYLAALADRL 180

Query: 176 EPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                    ++     + + +  R   ++  LA T  + 
Sbjct: 181 LEELHARGREDWARSEMARLVERRRRDIEPELAWTRIRE 219


>gi|227529584|ref|ZP_03959633.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
 gi|227350483|gb|EEJ40774.1| DNA-directed DNA polymerase III [Lactobacillus vaginalis ATCC
           49540]
          Length = 178

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 31/147 (21%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET      S   L    +   K A++   +      +      W        
Sbjct: 1   MNFVAMDFETANGKRYSACSLALTIVRDSKIADEFYTL-----INPQTDFFWRNVQIHGI 55

Query: 46  ---DCVHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTL 97
              D    P  P+V    +     +  ++AHN+ F+ +VLK     + +  P  + + T+
Sbjct: 56  HEEDVQDAPTFPEVWQHIKQFYRPEQLVIAHNNSFDNSVLKNTLLHYGIQPPTFQTLDTV 115

Query: 98  VLARSNGLP---SALKAVGEALKLSSQ 121
             +R          L  V +AL++   
Sbjct: 116 KSSRRLIPGLDNYRLNTVCDALQIDLH 142


>gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group]
 gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica
           Group]
 gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group]
 gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group]
          Length = 600

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 34/235 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LKE  ++     V H +  +   L+   +  I +     T   +R   +           
Sbjct: 210 LKEHFKDPTKRKVMHGADRDIMWLQR--DFHIYVCNLFDTGQASRVLQMERN-------- 259

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRL 175
                     + L+  FC          +N             +Y + D      ++  +
Sbjct: 260 --------SLEHLLRHFC--GVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLM 309

Query: 176 EPL------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                             ++    +   + ++    D +  H           K    + 
Sbjct: 310 RLRLQKESTSDNDLLLEVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQLAVVY 369

Query: 224 SLTYGLVSSSRCLEKLKTW-LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
           +L       +R +++   + L  +  + +     T    +    K   P   +  
Sbjct: 370 ALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDENL 424


>gi|324995504|gb|EGC27416.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK678]
          Length = 814

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 73/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLSQAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAESLFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLML 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCHGIFLRLPQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              +R++  +    +   L        + +T L    G  L 
Sbjct: 242 GLEKRSEQLKFAHFMEEALDQQEASFLEAQTGLGKTFGYLLP 283


>gi|317181232|dbj|BAJ59018.1| DNA polymerase III subunit epsilon [Helicobacter pylori F32]
          Length = 287

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     L    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 193 LSMRYSLSFLKELLGFG 209


>gi|307638212|gb|ADN80662.1| DNA polymerase III epsilon subunit [Helicobacter pylori 908]
 gi|325996805|gb|ADZ52210.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2018]
 gi|325998398|gb|ADZ50606.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2017]
          Length = 287

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 46/137 (33%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     L    +   A       +I     L       D+  EL    ++  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVRGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 134

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 135 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 193 LSMRYSLSFLKELLGFG 209


>gi|290490726|dbj|BAI79323.1| WRN helicase [Gallus gallus]
          Length = 1498

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 33/221 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+         +   + L      +    L+        P+ LK  LE+  +  V     
Sbjct: 92  DIEWPPSYTKGKMAKIALIQLCVTEEKCYLFHISSMSGFPKGLKRLLEDETIKKV----- 146

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
                      + I    W    ++         LK+  E   ++++K++  +       
Sbjct: 147 ----------GVGIEGDHW---KLMG---DFEVKLKSFVELADVANEKLKCKEVWSLNGL 190

Query: 135 KGETHECLYDRNKPNHREAWRLF------GEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
                     ++K      W  F        Y   D      I+++L+ ++S +++L+  
Sbjct: 191 VKHLFGKQLLKDKSIRCGNWEKFPLDEERKLYAATDAYAGFIIYQKLKNMNSIDRKLF-- 248

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                +R   V           +    + L  ++   +  L
Sbjct: 249 ----GERRDEVLSDDVKERLTSLAEGMSYLAAKISDSSGQL 285


>gi|88606785|ref|YP_505310.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
 gi|88597848|gb|ABD43318.1| DNA polymerase III, epsilon subunit [Anaplasma phagocytophilum HZ]
          Length = 244

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 38/153 (24%)

Query: 1   MA--TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHD------ 50
           M    + +D ET     L   G  +  E  CV L  +      V     D   D      
Sbjct: 1   MKVREIVLDTETTG---LDADGGDRIIEIGCVELVDY-VMTGRVFHKYIDPERDISVAAT 56

Query: 51  ----------------PVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPI 90
                             +   L + L+++ +  V HN+ F+   L    +   N     
Sbjct: 57  RVHGITRESLIGMPKFAEVADELLDFLQDSAL--VIHNARFDMRFLEVEIERLSNKRAIT 114

Query: 91  HRWICTLVLAR--SNGLPSALKAVGEALKLSSQ 121
           +  + TL +AR    G+P++L A+ +   +S+Q
Sbjct: 115 NTIVDTLEMARKKFPGMPASLDALCKRFNISTQ 147


>gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262]
 gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262]
 gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           innocua FSL S4-378]
          Length = 1444

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 73/289 (25%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  +E   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 486 MVKGSDPIDVVLKQFREW--SGDDILVAHNASFDMGFINTAYEKVGLEKAKNAVVDTLEL 543

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     +   H   
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEFHDSL 603

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y + DV +    ++                  Q    R  
Sbjct: 604 NDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNINYFYRVPRIPRSQLKKMREG 663

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 664 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 711


>gi|297626438|ref|YP_003688201.1| ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922203|emb|CBL56771.1| Ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 445

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 82/297 (27%), Gaps = 50/297 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD----CVHDPVMPQ--VL 57
           + ID E        +    +Y     ++   F   D    L D       D  +     L
Sbjct: 59  VAIDTE--------RAQSFRYTARAYLL--QFRRTDSGTWLIDPQAFQPSDGSLADFSAL 108

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL 116
           +EA+ + +   + H +  +   L     + +   R   T +  R  G P  +L  + E  
Sbjct: 109 REAIASAE--WIIHAATQDLPCL---VEIGLYPSRLFDTELAGRLLGFPRVSLGTMIEQH 163

Query: 117 -KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             +   K     +   R                        +  Y   DV +  E+   +
Sbjct: 164 FGVHLLKEHSAADWSRRPLPP-------------------DWIAYAALDVELLIELRNLV 204

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS--S 233
                   +  + D    +  + VDV              T     + S     +     
Sbjct: 205 ADELVAAGKKEWAD---EEFAHLVDVYRHPQQRPGDPWRHTSGSHHVRSRRGLALVRALW 261

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI---QVFNNRMRASRSA 287
              +++   L    G  + D   +     ++ + +  P A    ++   R   ++  
Sbjct: 262 EQRDEIARELDKAPGKIVPDKAISELASEVTKDSEKMPTARDMNKIMGFRRTYAKRY 318


>gi|75911820|gb|ABA29507.1| hypothetical protein [Campylobacter jejuni]
          Length = 276

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 46/201 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M       +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 91  IDGQNEKEMIANFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 150

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 151 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 200

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD----QTINDRG 196
                    +        EYC+ DV  T  +F + E + +   E  Y+D         R 
Sbjct: 201 --------FYENKLEKIHEYCESDVLNTYMLFLKYELIKANVSEEDYVDFLSYMRDFLRS 252

Query: 197 YCVDVALAHTLNQIVDVERTK 217
              D +      +  + E +K
Sbjct: 253 KKSDCSYTEVFAKACESEISK 273


>gi|294792957|ref|ZP_06758103.1| exonuclease [Veillonella sp. 6_1_27]
 gi|294455902|gb|EFG24266.1| exonuclease [Veillonella sp. 6_1_27]
          Length = 209

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 22/140 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKY-AEDVCVILFAFG--------FDDH--PVELW---DC 47
             + +DFET +    + C +     +D  +   A+         FDD    +      D 
Sbjct: 3   DFVALDFETANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPKDV 62

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
           +H+    Q+     EN      +VAHN+ F+  VL+A    + +  P   + CT+ L+R+
Sbjct: 63  LHEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKLSRA 122

Query: 103 NGL---PSALKAVGEALKLS 119
                    L  +   + + 
Sbjct: 123 VWPDLVNHKLNTMAAYIGVE 142


>gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO]
 gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO]
          Length = 1379

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 33/150 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPV------ELWD-------- 46
             + ID E    +D+   G+        +I   A   ++  +       +          
Sbjct: 361 KDIEIDQERYVIVDIETTGLHPMFS--EIIEIGAVAIENGQITDEFHSFVKPSEKLNAFT 418

Query: 47  ----------CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKACFNLDIPIH---R 92
                       + P + +VL + +E   D T+VAHN+ F+   L+      + ++    
Sbjct: 419 VQFTKITDQMLANQPSIEEVLPKFMEFCKDTTLVAHNANFDYRFLRYWIEKSLKLNWEPA 478

Query: 93  WICTLVLARSN--GLPSALKAVGEALKLSS 120
            I TL LA+         L+ +    KL  
Sbjct: 479 VIDTLALAKKLVRLSSYNLEKLASHFKLGP 508


>gi|110834086|ref|YP_692945.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2]
 gi|110647197|emb|CAL16673.1| DNA polymerase III, epsilon subunit [Alcanivorax borkumensis SK2]
          Length = 247

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 33/150 (22%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y   +  +   A       
Sbjct: 1   MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNSLHLYLNPEREIDAGALAVHGIS 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK--------ACFNLDIPIHR 92
            E   D      +      A  +    ++ HN+ F+   L             ++     
Sbjct: 61  SEFLADKPTFDKVVDEFL-AFVDGAELVI-HNAPFDVGFLNHELRRLGTRYGTIE-QRCG 117

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TLV+AR        +L A+     + +
Sbjct: 118 VLDTLVMARQKHPGQKNSLDALCRRYFVEN 147


>gi|118348280|ref|XP_001007615.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89289382|gb|EAR87370.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 964

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 46/180 (25%), Gaps = 36/180 (20%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--KEALEN 63
           ID E  S       G         V        +    + D +        L  K    N
Sbjct: 777 IDLEYYSENKDKNLGF--------VCTIQISTVNMD-FMIDAMALRNQINQLLNKSLFLN 827

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALKAVGE-ALKLS 119
                + H    +   LK  F++DI       T+             +LK + +  L + 
Sbjct: 828 KTKIKILHGCENDIKWLKNDFDIDI--VNLFDTMFAEMIIKNKQQSYSLKNLSQDYLGVE 885

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                R  P           Y + D  +   +F  ++ + 
Sbjct: 886 LDKSYQISDW-------------RIRPLPT------PMMNYARVDSFILLRLFPIMKQML 926


>gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
 gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. MED193]
          Length = 484

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 31/140 (22%)

Query: 6   IDFETRSP----IDLTKCGI-----CKYAEDVCVILFAFGFDDHP--------VELWDCV 48
            D ET        D+ + G       +  E   +       D           V      
Sbjct: 280 FDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTL---VDPGRPIPEASTRVHGVSTA 336

Query: 49  HDPVMPQVLKEA----LENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                P + + A    L  TD  IVAHN+ F+   L+       L    H  + T++L+ 
Sbjct: 337 MVQGAPDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLAWD-HPILDTVLLSA 395

Query: 102 SN---GLPSALKAVGEALKL 118
                 +P  L A+ E L +
Sbjct: 396 VLFGASVPHTLDALCERLDI 415


>gi|170717427|ref|YP_001784527.1| ribonuclease D [Haemophilus somnus 2336]
 gi|168825556|gb|ACA30927.1| ribonuclease D [Haemophilus somnus 2336]
          Length = 381

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 108/377 (28%), Gaps = 50/377 (13%)

Query: 3   TLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            + +D E   T+S     K G+ +             +D   V L D            +
Sbjct: 35  VIALDTEFVRTKSFYP--KLGLIQL------------YDGEQVSLIDPFELNDF-SPFIQ 79

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L N  VT V H    +  V +  F         + T ++A           +   LK  
Sbjct: 80  LLANQKVTKVLHACSEDLEVFQHYFQQL--PTPMLDTQIMAAFL-QHGNSIGLATLLKH- 135

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                        + K E  + +   N      +  +   Y   DV     +++R++   
Sbjct: 136 -------------YFKLEIDKGISRTNWLARPLS-DVQLHYAAADVWYLLPLYQRMQQKL 181

Query: 180 SKEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVERTKLDQELESLTYG-LVSSSR 234
           ++      +     +         D   A+          ++    L+ L       + +
Sbjct: 182 AQTSWQSAVQNDCENLLKKYTQIKDSNNAYFSISGAWKLNSQELMRLKLLAKWRQEEAIK 241

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLS---SNKKLTPQAIQVFNNRMRASRSAVLKL 291
               L   +  E  + L         ++LS   S  ++     ++     +A+++     
Sbjct: 242 RNLALNFVIRAEHLILLAQHNPKYTSQLLSIGLSLLEVRIHGKKILQLLEKANKAPAYDY 301

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSIT 351
              +  +  D R R  ++ L A+           P +LP    S + +   +        
Sbjct: 302 PPPILRVTDDHRYRVAIKLLQATL------REITPADLPTEVLSTKRMLDQLIKWHWIKQ 355

Query: 352 SDPDPLQIISDCVRSCV 368
            +P  L  +    R   
Sbjct: 356 DNPHDLPDLLCGWRREF 372


>gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group]
          Length = 599

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 34/235 (14%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LKE  ++     V H +  +   L+   +  I +     T   +R   +           
Sbjct: 209 LKEHFKDPTKRKVMHGADRDIMWLQR--DFHIYVCNLFDTGQASRVLQMERN-------- 258

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRL 175
                     + L+  FC          +N             +Y + D      ++  +
Sbjct: 259 --------SLEHLLRHFC--GVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLM 308

Query: 176 EPL------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELE 223
                             ++    +   + ++    D +  H           K    + 
Sbjct: 309 RLRLQKESTSDNDLLLEVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDLDAKQLAVVY 368

Query: 224 SLTYGLVSSSRCLEKLKTW-LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
           +L       +R +++   + L  +  + +     T    +    K   P   +  
Sbjct: 369 ALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFVDENL 423


>gi|45358454|ref|NP_988011.1| exonuclease [Methanococcus maripaludis S2]
 gi|44921212|emb|CAF30447.1| Exonuclease [Methanococcus maripaludis S2]
          Length = 191

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 36/123 (29%)

Query: 3   TLFIDFETRS----------------PIDLTKCGICKYAED------VCVILFAFGFDDH 40
            +F+D ET                   ++L K     Y+ D        V        D 
Sbjct: 2   YVFLDTETTGLHPGQIAQLSYLVTDEDLNLKKVFNQYYSVDHMSRSAAKVHGLTVEILDE 61

Query: 41  PVELWDCVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWI 94
                   +          +++ LE++ +  + HN  F+   LKA       +       
Sbjct: 62  ------LSNGMTFEDTVDEVRDDLEDSVI--IGHNISFDIRFLKAEFERLGPEYVPKDKF 113

Query: 95  CTL 97
           CT+
Sbjct: 114 CTM 116


>gi|229472569|gb|ACQ72799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 13/144 (9%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R    AS G+++V ADL+G+E R LA          A   G            +   
Sbjct: 10  PEFRRLFRASPGQRMVGADLSGVELRCLAHYL-------AGYDGGRYGEILLNDDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +   +L+      K     + + DA + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDQKI---GLSYDKSLSPNKAKAKGKEIRQAYIDAIDG 119

Query: 482 CRWM---QENHPEHAIEDLFIGTA 502
              +    +   E           
Sbjct: 120 LDKLLKDIKQASERGYVRAIDKRK 143


>gi|269797470|ref|YP_003311370.1| exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
 gi|269094099|gb|ACZ24090.1| Exonuclease RNase T and DNA polymerase III [Veillonella parvula DSM
           2008]
          Length = 209

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 22/140 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKY-AEDVCVILFAFG--------FDDH--PVELW---DC 47
             + +DFET +    + C +     +D  +   A+         FDD    +      D 
Sbjct: 3   DFVALDFETANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPKDV 62

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
           +H+    Q+     EN      +VAHN+ F+  VL+A    + +  P   + CT+ L+R+
Sbjct: 63  LHEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKLSRA 122

Query: 103 NGL---PSALKAVGEALKLS 119
                    L  +   + + 
Sbjct: 123 VWPDLVNHKLNTMAAYIGVE 142


>gi|332702439|ref|ZP_08422527.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
 gi|332552588|gb|EGJ49632.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
          Length = 409

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 36/146 (24%), Gaps = 25/146 (17%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
             D  V L D +    +   L E L +  +  + H+   +   L               T
Sbjct: 70  VADGGVFLVDPLGVDDL-SPLVEILADPRLIKIFHSCQEDLEALYYLCGF--APGPVFDT 126

Query: 97  LVLARSNGLPS--ALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            V A   G        ++ +AL  +   K E     I R                     
Sbjct: 127 QVAASFLGYGFQPGYGSLVKALFGVELDKDETRSNWIKRPLS------------------ 168

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLS 179
                 Y   DV     ++  L    
Sbjct: 169 -ESQLIYAAQDVRYLPAMYSILGQAL 193


>gi|300784546|ref|YP_003764837.1| ribonuclease D [Amycolatopsis mediterranei U32]
 gi|299794060|gb|ADJ44435.1| ribonuclease D [Amycolatopsis mediterranei U32]
          Length = 407

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 56/192 (29%), Gaps = 34/192 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E        +    +Y     ++      +     L D +        L+E L  
Sbjct: 43  VAVDTE--------RASGYRYFPKAYLV--QLRREGAGTVLIDPIALDGELAPLREVLN- 91

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
             +  V H +  +   L     L +       T +  R  G    AL  + E L      
Sbjct: 92  -SLEWVLHAASQDLPCLAE---LGLHPAALFDTELAGRLAGYERVALGTLVELL------ 141

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
              G  L       E      D +K      W     Y   DV +  ++ ++LE     +
Sbjct: 142 --LGYTL-------EKGHSAADWSKRPLPVDW---LNYAALDVELLIQLREKLEAELGAQ 189

Query: 183 QELWYLDQTIND 194
            +L +  Q    
Sbjct: 190 GKLEWARQEFEF 201


>gi|218670444|ref|ZP_03520115.1| ribonuclease III protein [Rhizobium etli GR56]
          Length = 212

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 51/187 (27%), Gaps = 29/187 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           + +      + L         V +       +      E +
Sbjct: 19  DFITIDTE----------FLRETTFWPELCLIQMASPTLEVLVDPLAKG-IDLAPFFELM 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +T V  V H +  +  ++    N  +  H    T V A   G      +V     +S  
Sbjct: 68  ADTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFG---DSVSYDQLVSRI 122

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K            K         R             EY   DVT  R+++  L+    +
Sbjct: 123 KSVHI-------DKSSRFTDWSRRPLS------DKQLEYALADVTHLRDVYLSLKAELDR 169

Query: 182 EQELWYL 188
           E    +L
Sbjct: 170 EGRTSWL 176


>gi|126734401|ref|ZP_01750148.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2]
 gi|126717267|gb|EBA14131.1| DNA polymerase III, epsilon subunit [Roseobacter sp. CCS2]
          Length = 241

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 54/192 (28%), Gaps = 46/192 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LW------------- 45
           M  + +D ET            +  E   V L                            
Sbjct: 1   MREIVLDTETTGFEP---HEGDRIVEIGAVELMGH-VPTGRTYHQYINPQRSMPAEAFGV 56

Query: 46  -----DCVHDPVMPQVLKEALENT---------------DVTIVAHNSYFERTVLKACFN 85
                D +  P  P+  +E L +                D  +V HN+ F+   L A   
Sbjct: 57  HGIGPDLLEPPQDPKPGQETLRDKPLFKDVAQDFVDFVGDAKLVIHNAAFDMKFLNAELG 116

Query: 86  L----DIPIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEE-GKELIARFCKGET 138
                 +P+ + + TL +AR    G P++L A+     + +      G  L +       
Sbjct: 117 WLNRPLLPMDQALDTLAIARRKFPGSPASLDALCRRFAIDNSSRTLHGALLDSEILAEVY 176

Query: 139 HECLYDRNKPNH 150
            E +  R     
Sbjct: 177 LELIGGRQPDFA 188


>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
 gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 1458

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 27/144 (18%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVE--------------L 44
            +  D ET         + + G  KY + V V       +                   +
Sbjct: 421 YVIFDIETTGLSPYYDKIIEFGAIKYHKGVQVESIQMFINPEEKISDKIFAITKISNEDV 480

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHN-SYFERTVLKACF---NLDIPIHRWICTLVLA 100
            D +        +K+ + ++   ++AHN   F+   L        +DI  +  I TL ++
Sbjct: 481 KDALKIKEALVKIKDFIGDS--VLIAHNGIKFDLPFLNCKLEENKMDIIKNPLIDTLQIS 538

Query: 101 RSNGL---PSALKAVGEALKLSSQ 121
           R+        +L  +    K+   
Sbjct: 539 RAINEQIHGHSLGVIARKYKIDYD 562


>gi|332674336|gb|AEE71153.1| DNA-directed DNA polymerase III epsilon subunit [Helicobacter
           pylori 83]
          Length = 287

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     L    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 193 LSMRYSLSFLKELLGFG 209


>gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 1449

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 36/148 (24%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVI---------LFAF--------GFDDHPV 42
           +  D ET         + + G  K      +I           +            +  V
Sbjct: 423 VVFDIETTGLNSHTNKIIEIGAVKIKA-GRIIDRYSQLINPGISIPYHITEITSITNEQV 481

Query: 43  ELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTL 97
                 + P + +V+ + +E   D  +VAHN+ F+   +K       N+D+     I TL
Sbjct: 482 -----ANQPKIDEVIGKFVEFIGDAVLVAHNAPFDMGFIKRDIKEYLNIDLE-SSVIDTL 535

Query: 98  VLARSNGLP---SALKAVGEALKLSSQK 122
            +AR          L  + ++L L+ +K
Sbjct: 536 QMARDLFPDFKKYGLGDLNKSLGLALEK 563


>gi|317179729|dbj|BAJ57517.1| DNA polymerase III subunit epsilon [Helicobacter pylori F30]
          Length = 287

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     L    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 193 LSMRYSLSFLKELLGFG 209


>gi|260576103|ref|ZP_05844096.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2]
 gi|259021583|gb|EEW24886.1| DNA polymerase III, epsilon subunit [Rhodobacter sp. SW2]
          Length = 231

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 32/148 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV---- 56
           M  + +D ET            +  E   + LF                +  MP+     
Sbjct: 1   MREIVLDTETTGFEPSEG---HRIVEIGALELFNH-LPTGRTFHKYLNPERSMPKEAFDV 56

Query: 57  ------------LKEALENTDVTIVA------HNSYFERTVLK---ACFNLD-IPIHRWI 94
                       L  A+    +  +       HN+ F+   L    A  NL  +P  R +
Sbjct: 57  HGLGDDFLRGKPLFRAVAREFLEFIGDATLVIHNASFDMKFLNAELAAANLPLLPFERAL 116

Query: 95  CTLVLAR--SNGLPSALKAVGEALKLSS 120
            T+++AR    G P++L A+     + +
Sbjct: 117 DTVLMARKKFPGSPASLDALCRRFGVDN 144


>gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 659

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN---GLPSALKAVGEALK 117
            D  +VAHN+ F+   L+            ++ + T++L+        P +L A+ E L 
Sbjct: 531 EDTVLVAHNAPFDMGFLRRAVPETGAHFD-NQVLDTVLLSAMLWGQSAPHSLDALTERLG 589

Query: 118 L 118
           +
Sbjct: 590 I 590


>gi|257063921|ref|YP_003143593.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
 gi|256791574|gb|ACV22244.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
          Length = 392

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 81/286 (28%), Gaps = 53/286 (18%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L ID E     T                   + L      +  V +            
Sbjct: 19  KVLAIDTEFMREKTYW---------------PKLCLIQLATPERAVAVDPLRLHD--LSA 61

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLVLARSNGLPSALKAVGE 114
           L    ++ ++  + H S  +  ++    N+++         T + A   G          
Sbjct: 62  LNVLFQDENILKLFHASRQDLEII----NIEMGCLPAPIFDTQIAAALLGHT-------T 110

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +      M E   L     K +++     R     +       +Y   DV    +++  
Sbjct: 111 QIGYGPLVMNE---LGVHLKKADSYTDWSRRPLTKSQ------LQYALDDVIYLPKLYDS 161

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           +     K   + +L     D     +        + + ++R     + +      V++ R
Sbjct: 162 MSRKLKKLNRMDWLASDFRDLSDPSNYEKPPE-ERFLHLKRVNQLNQQQLACARNVAAWR 220

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
             + +K  +  +  L        T ++++   K+      ++F  R
Sbjct: 221 ERKAMKRNIPRKWVL--------TDEQLVEICKREPQSIDELFMVR 258


>gi|326427333|gb|EGD72903.1| hypothetical protein PTSG_04632 [Salpingoeca sp. ATCC 50818]
          Length = 1060

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/296 (10%), Positives = 73/296 (24%), Gaps = 63/296 (21%)

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
              I   +++ V A  G K V AD+   E  + A          A  TG          +
Sbjct: 741 PNRIGSELKAMVRAPPGCKFVGADVDSQELWIAAL------LGDARFTGIHGSTALGWMT 794

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
              +    +       +++       G            G        L+   +   + +
Sbjct: 795 LQGSKKDKSDMHTKTAEIV--GCHTGGS--KIFNYGRIYGAGRPFAKGLIMQFNPTIKED 850

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ-KHSRVSELWNELHQAFEQTIENG 535
           +A+     + +          + G +   +     +  + +V +                
Sbjct: 851 EAKTLANELYDKTKGQMTSLGYSGGSESEMFNQLEEIANRKVPK---------------- 894

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                      P +  +         L                      +   +   Y  
Sbjct: 895 ----------TPFLGFRLTAGLQPRYL--------------------AKKGRKKATDYLP 924

Query: 596 KLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                +VQ+ + D   ++   M   +        + +T+HDE+     D D    +
Sbjct: 925 TRINWVVQSSAVDYLHLMLVSMKYFITQYDMKARLCITIHDEVRYIVADEDVARFA 980


>gi|302817816|ref|XP_002990583.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
 gi|300141751|gb|EFJ08460.1| hypothetical protein SELMODRAFT_448085 [Selaginella moellendorffii]
          Length = 1449

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 48/177 (27%), Gaps = 22/177 (12%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L           L D +      + L+    N  +  V H +  +   L+   +  I + 
Sbjct: 800 LIQISTYKRD-YLIDAIALHDEMETLRPVFANASICKVFHGADSDILWLQR--DFHIYVV 856

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T   AR+             L    + +     L+  +C   T++     +     
Sbjct: 857 NLFDT---ARACD----------VLGKPQRSLAY---LLQTYCNISTNKAFQKSDWRQRP 900

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW--YLDQTINDRGYCVDVALAHT 206
                   Y + D      I ++L     + +        Q    R + + + L   
Sbjct: 901 LP-EDILLYARSDAHFLLYIARKLYSELLQGETDLANAPLQMATRRSHLICLQLYEK 956


>gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1428

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 22/138 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYA---EDVCVI-----------LFAFGFDDHPVELWDCVH 49
           +  D ET          I   A       ++             +    +      D V 
Sbjct: 417 VVFDTETTGLNAREHTLIEIAAVKVRGGELVDHYTSLIDPGVPISPKIQELTGITSDMVK 476

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNG 104
                  + EA         +VAHN+ F+   L             H  + TL LAR   
Sbjct: 477 GQPGLSEVLEAFRKFAAGAVLVAHNAEFDMGFLQSAARKLGQPPWDHPVLDTLALARVLY 536

Query: 105 L---PSALKAVGEALKLS 119
                  LK + +   + 
Sbjct: 537 PRERNHRLKTLTQKFNVE 554


>gi|218461991|ref|ZP_03502082.1| RNase D protein [Rhizobium etli Kim 5]
          Length = 293

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 63/240 (26%), Gaps = 34/240 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID E           + +      + L         V +       +      E +
Sbjct: 19  DFITIDTE----------FLRETTFWPELCLIQMASPTLEVLVDPLAKG-IDLAPFFELM 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +T V  V H +  +  ++    N  +  H    T V A   G      +V     +S  
Sbjct: 68  ADTKVLKVFHAARQDIEIIFNRGN--LIPHPIFDTQVAAMVCGFG---DSVSYDQLVSRS 122

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K            K         R             EY   DVT  R+++  L     +
Sbjct: 123 KNVHI-------DKSSRFTDWSRRPLS------DKQLEYALADVTHLRDVYLSLSSQLDR 169

Query: 182 E----QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE 237
           E         +D       Y +    A    + + + + +    L+ +       +R   
Sbjct: 170 EGRTSWLREEMDVLEARETYDMHPDDAWQRLK-MRLRKPQELAILKYVAAWREREARARN 228


>gi|319939450|ref|ZP_08013810.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV]
 gi|319811436|gb|EFW07731.1| DNA polymerase III [Streptococcus anginosus 1_2_62CV]
          Length = 819

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 65/215 (30%), Gaps = 19/215 (8%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         ++   R   T+ LA+       
Sbjct: 74  QVAREIYELIEDA--IFVAHNVKFDANLLAEALFWEGFELVTPRV-DTVELAQVFFPTFE 130

Query: 107 -SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY- 160
              L  + E L +  +     + +       F K +       +    +   +     Y 
Sbjct: 131 KYNLGILCEQLDIPLKHAHTALADASATATLFLKIQEKIQKLPKELVEYLLKFSDSLIYE 190

Query: 161 ---CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
                 D     +I         K Q ++        +   +     H +N +   ER +
Sbjct: 191 SRLAIEDAF--HQISDITFHDLMKRQGIFLRKSKKIKKARKLSQNFQHNINLLDLEERKE 248

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
            D+    +   L S      + +T L    G  L 
Sbjct: 249 QDEFAHDVEQALKSQQPSFLQAQTGLGKTYGYLLP 283


>gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 769

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 41/143 (28%), Gaps = 36/143 (25%)

Query: 6   IDFETRSPID-----LTKCGICKY-------AEDVCVILFAFGFDDH----------PVE 43
            D ET          + + G  +        AE    +      D               
Sbjct: 582 FDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQL-----VDPERPLAPESAKIHGI 636

Query: 44  LWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLV 98
             + +        +  A      D  ++AHN+ F+   L   +    L    H  I TL+
Sbjct: 637 TSEMLRGQPTIDKVLPAFHAFAADTVLIAHNAAFDMRFLQLKEEQTGLRFD-HPVIDTLL 695

Query: 99  LARSNGL---PSALKAVGEALKL 118
           L+           L+A+ E L L
Sbjct: 696 LSAVVHPNQESHRLEAIAERLGL 718


>gi|219870644|ref|YP_002475019.1| ribonuclease D [Haemophilus parasuis SH0165]
 gi|219690848|gb|ACL32071.1| ribonuclease D [Haemophilus parasuis SH0165]
          Length = 375

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 80/318 (25%), Gaps = 47/318 (14%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L    FD   V L D +         
Sbjct: 28  VIALDTEFVRTRTYY---------------PKLGLIQL-FDGKQVYLIDPLSITDF-SPF 70

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              L N +V  V H    +  V +  F         + T V+A   GL  ++     AL 
Sbjct: 71  TALLANENVLKVLHACGEDLEVFQHYF--KQLPQPMLDTQVMAGFVGLGISIGFAKLALH 128

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               ++++G           +                 +  +Y   DV     I+ +L  
Sbjct: 129 YLEVELDKGASRTDWLSHPLS----------------EIQLQYACADVWYLLPIYHKLAE 172

Query: 178 LS-SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
                  +   +++          V   +   + +        QEL  L           
Sbjct: 173 DLAKTPWQTAVVEECATLLAKRQIVEDPNKAYKEISNAWQLNQQELAILQILAKWRIEEA 232

Query: 237 EKLKTWLFLETG----LHLEDLTETTCQRVLSSNKKLTPQA--IQVFNNRMRASRSAVLK 290
           EK    L         L +  L       +L        +    ++     +  +     
Sbjct: 233 EKRDLALNFIIKEQSLLQIAKLQPKHTSILLEFMHPNEVRIHGKKILWLVEQGKQILPEN 292

Query: 291 LNTLVEAMNSDGRLRGTL 308
              ++  +  +   + T 
Sbjct: 293 YPPVIRRLVDEAGYKTTF 310


>gi|161170263|gb|ABX59233.1| polymerase III epsilon subunit uncultured proteobacterium
           [uncultured marine bacterium EB000_55B11]
 gi|297183792|gb|ADI19915.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 230

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 56/185 (30%), Gaps = 45/185 (24%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVE--LW----DCV 48
           M  +  D ET         G   +A D  ++      +         V         D  
Sbjct: 1   MREIVWDTETT--------GFDPFAGD-RIVEIG-AVELNQHLPTGRVYHQYINPERDMP 50

Query: 49  HDPVMPQVL-KEALEN---------------TDVTIVAHNSYFERTV----LKACFNLDI 88
                   L  + L++                D T++AHN+ F+       LK      +
Sbjct: 51  PGAFEVHGLSIDFLKDFPVFSNIARDFIDFVGDATLIAHNAKFDMKFINAELKNANLPQV 110

Query: 89  PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDR 145
           P+++ + TL +AR     +  +L A+     + +    + G  L +        E +  R
Sbjct: 111 PLNQSLDTLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLELVGGR 170

Query: 146 NKPNH 150
                
Sbjct: 171 QPDFS 175


>gi|114769767|ref|ZP_01447377.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [alpha proteobacterium HTCC2255]
 gi|114549472|gb|EAU52354.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
           exonuclease [alpha proteobacterium HTCC2255]
          Length = 230

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 56/185 (30%), Gaps = 45/185 (24%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVE--LW----DCV 48
           M  +  D ET         G   +A D  ++      +         V         D  
Sbjct: 1   MREIVWDTETT--------GFDPFAGD-RIVEIG-AVELNQHLPTGRVYHQYINPERDMP 50

Query: 49  HDPVMPQVL-KEALEN---------------TDVTIVAHNSYFERTV----LKACFNLDI 88
                   L  + L++                D T++AHN+ F+       LK      +
Sbjct: 51  PGAFEVHGLSIDFLKDFPVFSNIARDFIDFVGDATLIAHNAKFDMKFINAELKNANLPQV 110

Query: 89  PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQK-MEEGKELIARFCKGETHECLYDR 145
           P+++ + TL +AR     +  +L A+     + +    + G  L +        E +  R
Sbjct: 111 PLNQSLDTLEIARKKFPGAQNSLDALCRRFNIDNSSRQKHGALLDSEILAEVYLELVGGR 170

Query: 146 NKPNH 150
                
Sbjct: 171 QPDFS 175


>gi|320354277|ref|YP_004195616.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122779|gb|ADW18325.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 995

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 41/223 (18%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGF----DDHPVELWDCVHDPVMPQVLKEAL 61
            D ET       + G         ++  +              +       + + L    
Sbjct: 799 FDIET--QRSAEEVGG---WHRAELMRVSVAVLYESCGQRFTTYTEATVGALIERLFAL- 852

Query: 62  ENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLV--LARSNGLPSALKAVGEALKL 118
                 +V  N+  F+  VL A  N D+ +      L+  ++   G   +L  + E   L
Sbjct: 853 ----DLVVGFNNKRFDNKVLSAYTNRDLGLLPSFD-LLEAISGLLGYRLSLDRLAEK-TL 906

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             +K   G E +  F +G                       YC+ DV +TR++F      
Sbjct: 907 RVKKEGNGLEALRWFKRG----------------EMEKLAAYCRKDVEITRDLF------ 944

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
               ++ + L Q    +   + V    ++ QI+D     L   
Sbjct: 945 LYGCRQQYLLFQNKAGQEVRLPVDFIQSIEQILDQRERMLRAR 987


>gi|319407179|emb|CBI80818.1| Ribonuclease D [Bartonella sp. 1-1C]
          Length = 383

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/297 (10%), Positives = 81/297 (27%), Gaps = 42/297 (14%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D  + L D +   +  Q   + + +  V  V H +  +  ++       
Sbjct: 37  PQLCLIQVASQDITI-LIDPMVQDINLQPFFDLMIDKKVVKVFHAARQDIEII-YHLG-G 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           I       T V     G   ++       + +   +++        C+  +         
Sbjct: 94  IIPSPLFDTQVAGSICGFGDSISYDQIVQRCTGHHLDKSSRFTDWSCRPLS--------- 144

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV-----DVA 202
                       Y   DVT  R+++  L+    +++   ++   +            +  
Sbjct: 145 -------EKQLLYAVSDVTYLRDVYLALKKQLEEKKRTHWMHDEMTLLLTPTTYDIPENE 197

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRC-----LEKLKTWLFLETGLHLEDLTET 257
               +   +  +R      L+ +       +R         +K    +E  +        
Sbjct: 198 AWKKVKGRITKKRE--LAVLQKIAAWREREARQYNVPRRHIMKDECLIEIAIQQPK---- 251

Query: 258 TCQRVLSSNK------KLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
             +  L   +        +P    +     +  ++ +  L  L +    D +   T+
Sbjct: 252 -DEAALYRLRSINKSWHHSPAVHTLIKAIHQGLKADLATLPALPKYNAIDDKTAVTI 307


>gi|317013348|gb|ADU83956.1| DNA polymerase III subunit epsilon [Helicobacter pylori
           Lithuania75]
          Length = 287

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     +    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 193 LSMRYSLSFLKELLGFG 209


>gi|296139599|ref|YP_003646842.1| 3'-5' exonuclease [Tsukamurella paurometabola DSM 20162]
 gi|296027733|gb|ADG78503.1| 3'-5' exonuclease [Tsukamurella paurometabola DSM 20162]
          Length = 404

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 84/338 (24%), Gaps = 69/338 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T S                   L         + L D +H+P     + 
Sbjct: 45  IALDTERASGFTYSS---------------RAYLIQIKRTGSGLFLLDPIHEPEGLAPVI 89

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           EAL    V  V H +  +   L+   +          T +  R  G P            
Sbjct: 90  EALR--GVEWVLHAADQDLPCLR---DDGFVCDALFDTELAGRLLGEPR----------- 133

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                     + + F      +     +          +  Y   DV +  ++       
Sbjct: 134 -----VNLAAMTSEFTGYALAKGHGAADWSTRPLP-HDWLNYAALDVELLVDLRDEAYER 187

Query: 179 SSKEQELWYLDQTINDRGYCVD----VALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                +L +  +         D          L+ +  +   +       L         
Sbjct: 188 LDAAGKLPWALEEFEYARTRPDPAPKPDPWRRLSGLSTLRTRRQLGRAREL-------WL 240

Query: 235 CLEKLKTWLFLETGLHLED--------LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +++     +  G  L D           TT   + +      P+  +     M A   
Sbjct: 241 ARDEMAEQRNVAPGRTLPDAAIVNAAAKNPTTEAELTALPVFGGPRMRRSATRWMGA--- 297

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVF 324
            + + N L ++      L G    + A+   RWS    
Sbjct: 298 -INRANALPDSALPP--LHGPRNGVPAN--NRWSKSNP 330


>gi|217033856|ref|ZP_03439281.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
 gi|216943754|gb|EEC23197.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
          Length = 287

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     L    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 134

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 135 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 193 LSMRYSLSFLKELLGFG 209


>gi|254429095|ref|ZP_05042802.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
 gi|196195264|gb|EDX90223.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
          Length = 246

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 33/150 (22%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y   +  +   A       
Sbjct: 1   MRQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNNLHLYLNPEREIDAGALAVHGIS 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL--------KACFNLDIPIHR 92
            E   D      +      A  +    ++ HN+ F+   L             ++     
Sbjct: 61  TEFLADKPTFDKVVDEFL-AFVDGAELVI-HNAPFDVGFLNHELRRLGARYGTIE-QRCG 117

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TLV+AR         L A+     + +
Sbjct: 118 VLDTLVMARQKHPGQKNNLDALCRRYFVEN 147


>gi|314988091|gb|EFT32182.1| 3'-5' exonuclease [Propionibacterium acnes HL005PA2]
          Length = 412

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 60/239 (25%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSGTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T +  R   LP  +L  + E    ++
Sbjct: 88  A--GTQWILHAATQDMPCLAM---DGLRPDDLFDTELAGRLLNLPRVSLGPMVERYCGVT 142

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W     Y   DV +  ++ +++    
Sbjct: 143 LLKEHSASDWSRRPL----------------PRDWPG---YAALDVELLNDLREKILSDL 183

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  +D      L+ I D+      Q    L 
Sbjct: 184 HEAGKEEWARQEFAHLVEVAADLPSEEPG--IDPKRWRKLSHIGDIHSRAGLQLAHDLW 240


>gi|170035413|ref|XP_001845564.1| exosome component 10 [Culex quinquefasciatus]
 gi|167877380|gb|EDS40763.1| exosome component 10 [Culex quinquefasciatus]
          Length = 796

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 50/180 (27%), Gaps = 34/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L ID E             +  +    +            + D +       VL E  
Sbjct: 281 KELAIDLE---------HHSYRTFQGFTCL-MQISTRTKD-YIIDTLALREELHVLNEVF 329

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
            +T V  V H S  +   L+   +L + +     T   A+        L+ + +    + 
Sbjct: 330 TDTKVVKVLHGSISDIEWLQR--DLALYVVNMFDTGEAAKVLEFSRIGLQFLLKHYCNIE 387

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R  P      + F EY + D      I+ R+    
Sbjct: 388 TDKAYQLADW-------------RIRPIP------KNFIEYARKDTHYLLYIYDRMRNEL 428


>gi|296270237|ref|YP_003652869.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
 gi|296093024|gb|ADG88976.1| 3'-5' exonuclease [Thermobispora bispora DSM 43833]
          Length = 403

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 45/189 (23%), Gaps = 43/189 (22%)

Query: 8   FETRSP----IDLTKCGICKYAEDVC----------VILFAFGFDD-HPVELWDCVHDPV 52
            ET       +D    G    A D              L     +      +        
Sbjct: 20  IETWPELSAAVDAFARGTGPVAMDAERASGYRYSGRAYLVQLRREGAGTALIDPVACPD- 78

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKA 111
               L   L + ++  V H +  +   L     L     R   T + AR  G     L  
Sbjct: 79  -LGELDRVLADAEI--VLHAATQDLPCLAE---LGFRPRRLFDTELAARLLGYERVGLAT 132

Query: 112 VGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           + E  L L  +K     +   R                   E W     Y   DV V  E
Sbjct: 133 MVEVVLGLRLEKGHSAADWSRRPL----------------PEDW---LRYAALDVEVLVE 173

Query: 171 IFKRLEPLS 179
           +   L    
Sbjct: 174 LRDALYEQL 182


>gi|251792786|ref|YP_003007512.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700]
 gi|247534179|gb|ACS97425.1| ribonuclease D [Aggregatibacter aphrophilus NJ8700]
          Length = 385

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 52/390 (13%), Positives = 116/390 (29%), Gaps = 60/390 (15%)

Query: 4   LFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           + +D E   TR+     K G+        + L+A       V L D              
Sbjct: 36  VALDTEFVRTRTFYP--KLGL--------IQLYA----GDEVALIDPTTIQDF-SPFIAL 80

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L +  VT V H S  +  V +  F           T V+A   G  ++            
Sbjct: 81  LADERVTKVLHASGEDLEVFQHYFQQL--PQPMCDTQVVANFLGFANSPGFATLVKHYFQ 138

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            ++++G        +  +                    +Y   DV     ++++++   +
Sbjct: 139 IEIDKGASCTDWLARPLSDTQ----------------LQYAAADVWYLLPLYQQMKAQLA 182

Query: 181 KEQELWYLDQTIN-----DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           + +    ++            Y  D   A+          +     L+ L    +  +  
Sbjct: 183 QTEWQSAVENECEFLLNKRAQYARDPEEAYFAIPNAWKLNSLELMRLKLLAKWRMQEAMR 242

Query: 236 LEKLKTWLFLETGLHLEDL--TETTCQRVLSSNKKLTPQA----IQVFNNRMRASRSAVL 289
            +    ++     L        ++T    L      T +      ++     +  R    
Sbjct: 243 RDLTLNFVVHAENLWTVAKHDPKSTSA--LLDLGLSTAEVRIHGKKLLQLLEQVKRIDPK 300

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
               +++ +  D R      +  A +T +       P+NLP+   +     + +      
Sbjct: 301 DYPPMIQRLMDDPR------YKAALKTLQQELTKITPENLPKELIAGRRGLESLMKWHWR 354

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
             +D +P ++++   R       G+KL+ A
Sbjct: 355 KEADNEPPELLNGWRR-----PFGEKLLNA 379


>gi|294943277|ref|XP_002783816.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
 gi|239896568|gb|EER15612.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
          Length = 350

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 40/152 (26%), Gaps = 21/152 (13%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQ--VLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           L           + D +   +M +         +  +  V H +  +   L+   +L   
Sbjct: 10  LIQIATRKKD-YIVDVLAPGIMMKMHDFNRITSDPGIVKVLHGADMDVQWLQR--DLSAY 66

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           +     T   AR   L                     K L+  +C  +  +     +   
Sbjct: 67  LCNMFDTGQAARVLELGGG---------------YSLKNLLDFYCGYKADKANQLADWRQ 111

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
              +     +Y + DV     I+ R+      
Sbjct: 112 RPLS-ERMKQYARDDVHYLLYIYDRMRAQLLC 142


>gi|172058850|ref|YP_001815310.1| exonuclease RNase T and DNA polymerase III [Exiguobacterium
           sibiricum 255-15]
 gi|171991371|gb|ACB62293.1| Exonuclease RNase T and DNA polymerase III [Exiguobacterium
           sibiricum 255-15]
          Length = 190

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 41/186 (22%)

Query: 3   TLFIDFET----------------------RSPIDLTKCGICKYAEDVCVILFAFGFDDH 40
           TL IDFET                       S   L        A ++ V          
Sbjct: 5   TLAIDFETANRNSRSICAFGWSVLSEGRVVTSEQVLINPEEDFDAGNIRVHGI------R 58

Query: 41  PVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWI 94
           P ++WD    P   +   L + +E  +  ++AHN+ F+   L    +      +P  ++ 
Sbjct: 59  PSDVWDAPALPEAMEAHGLFKLIEKAE-LVIAHNAAFDMGALQKAVQKYDLYQMPTFQYG 117

Query: 95  CTLVLARSNG---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
           CT+ L+R          L  + E L +S +  +  ++  A  C     + ++DR    H 
Sbjct: 118 CTVKLSRKLYPWLPNHKLNTMAEFLNVSFKHHDAKED--AYIC-ALLLQDMFDRTNIEHP 174

Query: 152 EAWRLF 157
                F
Sbjct: 175 VELHRF 180


>gi|300703774|ref|YP_003745376.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum
           CFBP2957]
 gi|299071437|emb|CBJ42756.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum
           CFBP2957]
          Length = 242

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 48/159 (30%), Gaps = 30/159 (18%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y   +  +   A       
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPEREIDAGAMAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI---PIHRWI 94
            E   D      +   +++ ++  +  I  HN+ F+   L        L      +   I
Sbjct: 61  NEFVADKPKFAEVVAEIRDYVQGAEAII--HNAAFDLGFLDMEFRRLGLPSFREHLDGHI 118

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL+ AR        +L A+ + L +S+        L+ 
Sbjct: 119 DTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLD 157


>gi|47934612|gb|AAT39744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 254

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/283 (10%), Positives = 60/283 (21%), Gaps = 102/283 (36%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           LV  D +G+E R+LA    +   ++    G     T        A    T+D     K  
Sbjct: 50  LVGCDASGLELRMLAHYMKDDDYVRTVCEGSSKDGTDVHTVNQRAAGLSTRD---NAKTF 106

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
             A  Y                                                 +    
Sbjct: 107 IYAFLY--------------------------------------------GAGDAKIGSI 122

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                    ++K  +  +   + +L   + +   +                         
Sbjct: 123 VGGSAKDGSKLKAKFLDQTPALRKLIERVSKQAAK------------------------- 157

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGM- 614
               +    GR +  R                            +++Q     ++ + + 
Sbjct: 158 --GWVPGLDGRRIWVRSEHA---------------------ALNSLLQGAGAIVMKKALV 194

Query: 615 -----MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMT 652
                +   K    +V  VHDE   E        A      M+
Sbjct: 195 IFSDKIKTNKWNVKLVANVHDEFQFECSKDIAEEAGKAAK-MS 236


>gi|317178251|dbj|BAJ56040.1| DNA polymerase III subunit epsilon [Helicobacter pylori F16]
          Length = 287

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     L    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L  S
Sbjct: 193 LSMRYSLSFLKELLGFS 209


>gi|300781383|ref|ZP_07091237.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
           33030]
 gi|300533090|gb|EFK54151.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
           33030]
          Length = 233

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 42/154 (27%), Gaps = 34/154 (22%)

Query: 2   ATLFIDFETRSPID-----------------------LTKCGICKYAEDVCVILFAFGFD 38
             L  D ET S                          L   G+    +   +        
Sbjct: 16  RMLSFDLETTSANPREARIVTSALVRIDGSSMTATETLADPGVDIPEQAARIHGIT---- 71

Query: 39  DHPVELWDCVHDPVMPQVLKEALE--NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                     HD V+ + +    +  +  +T+V  N+ ++ +VL+A              
Sbjct: 72  TEKARAEGRPHDDVLQETVAAIKQAWDEGLTLVVFNAPYDLSVLRALTGDFTVTGPVFDP 131

Query: 97  LVLARSNGL-----PSALKAVGEALKLSSQKMEE 125
           L++ R+           L A+ E   +      E
Sbjct: 132 LLIDRAMDRYRKGGKRNLGALSEFYGVRLDNAHE 165


>gi|58039094|ref|YP_191058.1| ribonuclease D [Gluconobacter oxydans 621H]
 gi|58001508|gb|AAW60402.1| Ribonuclease D [Gluconobacter oxydans 621H]
          Length = 396

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 64/247 (25%), Gaps = 45/247 (18%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + ID E     T                   + L         V L D +   +    L 
Sbjct: 33  VTIDTEFVRERTYW---------------PELCLVQLA-GTEDVVLIDTLAPGIDLAPLG 76

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L   D T V H +  +  +    F+          T V A   G    +        +
Sbjct: 77  ALLAKPDCTKVFHAARQDLEIFLHIFDRL--PASVFDTQVAAMVAGFGDQVGYDSLVGAI 134

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           + + +++         +  +                     Y   DVT  R ++  L   
Sbjct: 135 TGRSIDKAHRFSDWSARPLSKAQ----------------IAYAATDVTHLRTVYDALRKQ 178

Query: 179 SSKEQELWYLDQTI----NDRGYCVDVALAHTLNQI--VDVERTKLDQELESLTYGLVSS 232
            +++  L + D        ++ +  D        +    +     + +E+ +       +
Sbjct: 179 LAEQDRLHWADSEQAILTEEKTFRPDPRRLWEKLKARTSNRRMLGILREVTAWREQEAQN 238

Query: 233 SRCLEKL 239
           +    + 
Sbjct: 239 ADIPRQR 245


>gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
 gi|133739399|emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
          Length = 234

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 36/162 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET            +  E  CV L                       A    
Sbjct: 1   MRQIVLDTETTGLNP---RSGDRIIEIGCVELIDRRLTGNNFHHYINPERDSEEGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-----IH 91
               E   D      +    ++ +  +   +V HN+ F+   L      +++P     + 
Sbjct: 58  GLTTEFLSDKPKFAEIVDEFRDYI--SGAEVVIHNAPFDVGFLDAELKRVEMPLFKDHVG 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             + TL  A+        +L A+ +   +S+        L+ 
Sbjct: 116 GILDTLQQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLD 157


>gi|326332133|ref|ZP_08198417.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325950104|gb|EGD42160.1| DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 25/144 (17%)

Query: 6   IDFETRSPID------------LTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCV 48
           +D ET                 +   G    +E   ++    G D  PVE+      D  
Sbjct: 32  LDVETTGLDPYRDRVIQVAIRQIAADGT-AESEWETLVNPGAGVDPGPVEVHGLTTADLA 90

Query: 49  HDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNG 104
             P    V     E       VAHN+ F+   +        + + +  W+CT+  A++  
Sbjct: 91  GAPPFRDVAATIAERLAGRVFVAHNAAFDWAFVAVESDRAGVRLEVLDWLCTMRFAKALA 150

Query: 105 ---LPSALKAVGEALKLSSQKMEE 125
                 +L  +     +   K  +
Sbjct: 151 LDVPDKSLATIAAYYAVEQLKAHD 174


>gi|114777499|ref|ZP_01452496.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114552281|gb|EAU54783.1| probable DNA polymerase III (epsilon chain) protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 300

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 52/181 (28%), Gaps = 38/181 (20%)

Query: 1   MATLFIDFETRSPIDLT---------------------KCGICKYAEDV-----CVILFA 34
           M  + +D ET     L                      K    +Y          V+   
Sbjct: 53  MRLIMLDTETTGLSPLNGDRMVEIGAIEVLNRKVLSGDKHVFHRYINPERNIPDEVVRI- 111

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPI 90
            G D+  V+  D      + Q   + +E    T+V HN+ F+   +     +    +I  
Sbjct: 112 HGIDNAKVK--DQPTFREIAQEFLDFIE--GATLVIHNAPFDLGFIMNELRINNFPEIGH 167

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNK 147
            + I TLV AR         L A+ +   +    +   G  L +             R  
Sbjct: 168 MQVIDTLVFAREKHPHQRNNLDALCDRYNIERGHRELHGALLDSELLAEVYLGMTGGRQF 227

Query: 148 P 148
            
Sbjct: 228 S 228


>gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1449

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 13/111 (11%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTL-VLARSNGLP 106
            +     +  EN+   ++AHN  F+   L    K   NL + +  +I TL +        
Sbjct: 476 TILPKFLKFCENS--ILIAHNISFDMGFLVNQTKKHLNLKLNL-PFIDTLNLARYCLDSN 532

Query: 107 S---ALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                LK++ +  K    +        LI +    +    L  +N   +++
Sbjct: 533 LRYFNLKSLAKYFKISFENHHRAMSDVLITKTIFQQLLNYLLTKNIQFYQQ 583


>gi|188528322|ref|YP_001911009.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
 gi|188144562|gb|ACD48979.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
 gi|308064307|gb|ADO06194.1| DNA polymerase III subunit epsilon [Helicobacter pylori Sat464]
          Length = 287

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 32/141 (22%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI------------------LFAFGFDDHPVE 43
           FID ET     L    +   A   +   +I                  L    ++D    
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYITELTGIAYED---- 130

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA 100
             +        Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+
Sbjct: 131 TLNAPSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLS 188

Query: 101 --RSNGLPSALKAVGEALKLS 119
                 +  +L  + E L   
Sbjct: 189 KRAILSMRYSLSFLKELLGFG 209


>gi|187932764|ref|YP_001885887.1| exonuclease [Clostridium botulinum B str. Eklund 17B]
 gi|187720917|gb|ACD22138.1| putative exonuclease [Clostridium botulinum B str. Eklund 17B]
          Length = 974

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 53/204 (25%), Gaps = 36/204 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------- 54
             +++D ET               E + +        +             +P       
Sbjct: 10  NVIYLDIETTGLD-------ENNCEIIEIGAVKIKNSNVTTYEVLIRPKRNVPISIYKLC 62

Query: 55  QVLKE-------ALEN---------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           Q LKE        LE+          D+ ++ HN  FER  L     +    +    ++ 
Sbjct: 63  QGLKEEELMNSKYLEDIKNELLVFLEDLPLICHNGGFERKFLSCH--IPEIKNEIFDSME 120

Query: 99  LARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           L+           L ++ +++ +   K E  + L       +    L  R         +
Sbjct: 121 LSAILEPWRKEYNLDSLIKSITIL-DKDEFHRGLEDSIDTLKVVNSLLCREWIREESKKK 179

Query: 156 LFGEYCKGDVTVTREIFKRLEPLS 179
               Y   D           +   
Sbjct: 180 NKSLYNIIDKDYEFLKHWEWKEYL 203


>gi|15645997|ref|NP_208178.1| DNA polymerase III subunit epsilon [Helicobacter pylori 26695]
 gi|2314554|gb|AAD08426.1| DNA polymerase III epsilon subunit (dnaQ) [Helicobacter pylori
           26695]
          Length = 350

 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     +    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 170

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 171 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 229 LSMRYSLSFLKELLGFG 245


>gi|254477303|ref|ZP_05090689.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11]
 gi|214031546|gb|EEB72381.1| DNA polymerase III, epsilon subunit [Ruegeria sp. R11]
          Length = 244

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 52/197 (26%), Gaps = 58/197 (29%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMP 54
           M  + +D ET         G   ++ D  ++      +                 +  MP
Sbjct: 1   MREIVLDTETT--------GFDPFSGD-RIVEIG-AVELLNHMPTGETFHVYINPERSMP 50

Query: 55  QVLK-------EALENTDVT--------------IVA--------------HNSYFERTV 79
                      + LE                    V               HN+ F+   
Sbjct: 51  AEAFGVHGIGPDLLEPPQQPAPGAVTLRDKPVFAKVGKAFVDFVRDSKMIIHNASFDMKF 110

Query: 80  ----LKACFNLDIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIAR 132
               L+      +P+ + + TL +A  R  G P+ L A+     + +  +   G  L + 
Sbjct: 111 LNYELERMGLAALPMDQAVDTLAIARKRFPGSPATLDALCRRFNIDNSNRTLHGALLDSE 170

Query: 133 FCKGETHECLYDRNKPN 149
                  E +  R    
Sbjct: 171 ILADVYLELIGGRQPDF 187


>gi|75906891|ref|YP_321187.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
 gi|75700616|gb|ABA20292.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
          Length = 302

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 75/293 (25%), Gaps = 49/293 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-----DHPVELWDCVHDPVMPQVL 57
           TL+ID E               + +  + L     D        V L D +  P +    
Sbjct: 22  TLWIDTE----------VADYKSRNPRLSLIQVLDDPDDMSGDRVYLLDVLDQPDLVANF 71

Query: 58  KE-ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            E  + +T++  V HN+ F+  +L              CTL +A+    P  L  V    
Sbjct: 72  VEKIMVSTNIEKVFHNASFDVKLLGNK-----QAKNITCTLEIAKKI--PYHLLPVQ--- 121

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR-- 174
               Q +           K E       R             EY   D     +I +R  
Sbjct: 122 NYQLQSLATLLCNFNNIDKQEQSSNWGRRPLS------EEQIEYAYLDCIYLAQIHRRLL 175

Query: 175 -------LEPLSSKEQELWYLDQTINDRGYCVDVAL--AHTLNQIVDVERTKLDQELESL 225
                   +P +     +      I ++   ++          +     +   +     L
Sbjct: 176 DLQIESNPDPATVDITAINSRFSQIEEQWKLLNSEYEHLQEQLKKAMQAQNISETSTYKL 235

Query: 226 TYGL------VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
           T           S          + L+  + L    +      L        +
Sbjct: 236 TSHQRKVVKVQFSELSNLVQNQDISLDFPVTLTQKLQKDLGENLEQLSVDIEE 288


>gi|229472395|gb|ACQ72712.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R   + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRELFLPSPGQVMVAADLSGIELRMLSHFLARYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           + +      +  +A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEIRAAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLASIKTASERGFIKAIDGRK 143


>gi|116253032|ref|YP_768870.1| DNA polymerase/exonuclease [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257680|emb|CAK08778.1| putative DNA polymerase/exonuclease [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 196

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 25/141 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI---------------LFAFGFDD-HPVE 43
           M T+ IDFET +    + C +   + ED  V                          P  
Sbjct: 1   MKTIAIDFETANEQRGSACSVGLAWIEDGRVTRVEERLIRPRDMRFSGMNIAIHGIRPEH 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLA 100
           + D    P +    +E       T++AHN+ F+ +V +A  +L     P   ++C+L +A
Sbjct: 61  VEDAPEFPEVMDEFEEDFR--GATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMA 118

Query: 101 RSNGLP---SALKAVGEALKL 118
           +          L  + E L L
Sbjct: 119 QRIWPHFLSHRLNLIAEHLGL 139


>gi|302878569|ref|YP_003847133.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
 gi|302581358|gb|ADL55369.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
          Length = 233

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 43/162 (26%), Gaps = 39/162 (24%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV------------------ 42
           M  + +D ET          I + A        A   +   V                  
Sbjct: 1   MRKIVLDTETTGLDPKKGHRIIEIA--------AIALEGRKVSKRHFHHYLDPEREVDED 52

Query: 43  ------ELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIH 91
                   WD +        +  +         ++AHN+ F+ + +        L    +
Sbjct: 53  AARVHGFTWDMLKGRAKFADIATSFLEFVDGAELMAHNAPFDMSFINNELRLLGLPPLEN 112

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             + TL +AR         L A+    ++ +        L+ 
Sbjct: 113 PVVDTLKMAREMHPGKKNGLDALCSRYEIDNTHRTLHGALLD 154


>gi|170588753|ref|XP_001899138.1| 3'-5' exonuclease family protein [Brugia malayi]
 gi|158593351|gb|EDP31946.1| 3'-5' exonuclease family protein [Brugia malayi]
          Length = 573

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKEALENTDVTIVAH 71
           +D     +    E+  + L         + ++D VH   +     +KE LE+  +  V H
Sbjct: 325 VDFKTVTLGVQGEEF-LSLVVLATTMQ-IVVFDVVHSDTILLESGVKEILESEKIIKVIH 382

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           ++    T+L   + +++   +   T V     
Sbjct: 383 DAKRVATLLAHRYAINLR--KIFDTQVAHAIL 412


>gi|49474343|ref|YP_032385.1| ribonuclease D [Bartonella quintana str. Toulouse]
 gi|49239847|emb|CAF26240.1| Ribonuclease D [Bartonella quintana str. Toulouse]
          Length = 404

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 18/149 (12%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           L D +   +  +   + + +  +  V H +  +  ++       IP +    T +     
Sbjct: 73  LIDPMAQDMDLKPFFDLMVDEKIVKVFHAARQDIEII-YHLGGVIP-YPLFDTQIAGSIC 130

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
           G   ++       + +  ++++        C+  +                     Y   
Sbjct: 131 GFGDSISYDQIVQRCTGHQLDKSSRFTDWSCRPLS----------------EKQLLYALA 174

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTI 192
           DVT  R+++  L+    K + + ++D  I
Sbjct: 175 DVTYLRDVYLLLKKQLEKNKRMHWMDDEI 203


>gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
 gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
          Length = 230

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 34/149 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     +      +  E  CV +F                      AF   
Sbjct: 1   MREIVLDTETTGLDPVRG---DRLVELGCVEIFNRMPTGQTFHCYINPERDMPQEAFAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRW 93
               E   D      +     E + +    ++ HN+ F+ +     L+      I   R 
Sbjct: 58  GLSSEFLADKPLFAQVVDEFLEFIGDA--PLIIHNASFDISFINAELERLKRQVIGRERL 115

Query: 94  ICTLVLARSNGLPSA--LKAVGEALKLSS 120
           + TL++AR      +  L  +     + +
Sbjct: 116 VDTLLIARRKHPGVSNRLDDLCSRYAIDN 144


>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
 gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
 gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
           Tu6071]
          Length = 331

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 24/137 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHD------- 50
           +D ET        +    + +      V      L     D  PV +     +       
Sbjct: 22  VDVETTGLARDDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSEVLEGAPL 81

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP 106
            P + + L   L      +VAHN+ F+ ++L   +    +  P+ R +CT+ LA+   LP
Sbjct: 82  FPEIAEELSRRL--DGRVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAKELALP 139

Query: 107 ---SALKAVGEALKLSS 120
                L+ +     +  
Sbjct: 140 LPNHKLETLAAHFGVEQ 156


>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
 gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
          Length = 329

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 24/137 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHD------- 50
           +D ET        +    + +      V      L     D  PV +     +       
Sbjct: 24  VDVETTGLARDDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSEVLEGAPL 83

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP 106
            P + + L   L      +VAHN+ F+ ++L   +    +  P+ R +CT+ LA+   LP
Sbjct: 84  FPEIAEELSRRL--DGRVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAKELALP 141

Query: 107 ---SALKAVGEALKLSS 120
                L+ +     +  
Sbjct: 142 LPNHKLETLAAHFGVEQ 158


>gi|289676535|ref|ZP_06497425.1| ribonuclease D [Pseudomonas syringae pv. syringae FF5]
          Length = 142

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 23/133 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--- 60
           + +D E           +  +     ++      D     L D    P++    +     
Sbjct: 27  VALDTE--------FMRVDTFYPIAALLQIG---DGQSAWLID----PLLINDWRPLSAL 71

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALK 117
           LEN DV  V H    +  VL       +P+     T + A    L  ++     V E L 
Sbjct: 72  LENRDVIKVVHACSEDLEVLLRLTG-SLPV-PLFDTQLAAAYLNLGFSMGYSRLVQEVLD 129

Query: 118 LSSQKMEEGKELI 130
           +   K E   + +
Sbjct: 130 IDLPKGETRSDWL 142


>gi|282853987|ref|ZP_06263324.1| 3'-5' exonuclease [Propionibacterium acnes J139]
 gi|282583440|gb|EFB88820.1| 3'-5' exonuclease [Propionibacterium acnes J139]
 gi|314923384|gb|EFS87215.1| 3'-5' exonuclease [Propionibacterium acnes HL001PA1]
 gi|314981064|gb|EFT25158.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA3]
 gi|315091889|gb|EFT63865.1| 3'-5' exonuclease [Propionibacterium acnes HL110PA4]
 gi|315093353|gb|EFT65329.1| 3'-5' exonuclease [Propionibacterium acnes HL060PA1]
 gi|327327556|gb|EGE69332.1| putative ribonuclease D [Propionibacterium acnes HL103PA1]
          Length = 412

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSSTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T +  R   LP  +L  + E    ++
Sbjct: 88  A--GTQWILHAATQDMPCLAM---DGLRPDDLFDTELAGRLLNLPKVSLGPMVEHYCGVT 142

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W++   Y   DV +  ++ +++    
Sbjct: 143 LLKEHSASDWSRRPL----------------PRDWQV---YAALDVELLNDLREKILSDL 183

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  VD      ++ I D+      Q    L 
Sbjct: 184 HEAGKEEWARQEFAHLVEIAADLPSEEPG--VDPKRWRKISHIGDIRSRAGLQVAHDLW 240


>gi|262342103|gb|ACY54562.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342129|gb|ACY54575.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 63/275 (22%), Gaps = 98/275 (35%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G   V ADLAGIE R+ A          A   G            +   A
Sbjct: 11  EFRKLFTASSGYVTVGADLAGIELRMPAHYL-------ARYDGGRYGDVLLNGDIHQENA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G K       +    L+  A                   
Sbjct: 64  DKIGISRRLVKTVTYAFLYGAGDKKI---GLSYDPQLSDKAATA---------------- 104

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
                                + +++A+      + +L   +     Q            
Sbjct: 105 -------------------KGKEIRQAYMDAIPGLQKLVEAVKCKARQ------------ 133

Query: 543 RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIV 602
                            +    GR +                           K    ++
Sbjct: 134 --------------YNYINAIDGRRIACDGPH---------------------KALNYLL 158

Query: 603 QAVSRDILAEGMMNATKA------GYDIVLTVHDE 631
           Q+ +  I    M+   ++        + +  +HDE
Sbjct: 159 QSSAGVIAKRWMLLTDESLRQGSIEANQLAFIHDE 193


>gi|154488710|ref|ZP_02029559.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
           L2-32]
 gi|154082847|gb|EDN81892.1| hypothetical protein BIFADO_02017 [Bifidobacterium adolescentis
           L2-32]
          Length = 210

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 43/136 (31%), Gaps = 25/136 (18%)

Query: 6   IDFETRSPID----------LTKCGICKYAEDVCVILFAF--GFDDHPVELW---DCVHD 50
           +DFET               L         ED    L           V      D +H 
Sbjct: 8   VDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLIHVDRSVGASWVHHITARDLLHA 67

Query: 51  PV---MPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHR--WICTLVLARS 102
           P    +   L++ L       VAHN  F+   L A        IP+H+   +CT+ L+RS
Sbjct: 68  PDFEGIAHELRDLLA--GRVFVAHNVSFDSRFLLAEYSRMGASIPVHQSTMLCTMKLSRS 125

Query: 103 NGLPSALKAVGEALKL 118
                 L    +   +
Sbjct: 126 LIGRGKLSDCCDYFGI 141


>gi|153009869|ref|YP_001371084.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
 gi|151561757|gb|ABS15255.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
          Length = 385

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      DH   L D +   +        + +  +  V H +  +  ++      D
Sbjct: 37  PELCLIQMASPDHTA-LVDALAPGLDLAPFFRLMADETIVKVFHAARQDIEIV-FHLG-D 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       + V A   G          +     QK+        +  K         R  
Sbjct: 94  LIPSPVFDSQVAAMVCGFG-----DAISYDQLVQKVT-----GKQIDKSSRFTDWRRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            + +        Y   DVT  R+I+  L+    KE    ++++ +
Sbjct: 144 SDKQLD------YALADVTYLRDIYLYLKEELEKEGRSEWVNEEM 182


>gi|50286981|ref|XP_445920.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525226|emb|CAG58839.1| unnamed protein product [Candida glabrata]
          Length = 1284

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 81/301 (26%), Gaps = 71/301 (23%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           I   +++ + A EG   V AD+   E   +A + G+        T          ++   
Sbjct: 699 IGSELKAQICAPEGYSFVGADVDSEEL-WIASLFGDSVLRIHGGTPIGWMCLEGTKAEGS 757

Query: 420 APA----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
                  Q+    R   K+      Y  G K   ++       L+             + 
Sbjct: 758 DLHTKTAQILSCDRNEAKIFNYGRIYGAGVKFASQLLKKFNPTLSEKE---------AKE 808

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
              + +     +                               + W    ++        
Sbjct: 809 TAVKLYESTKGKTKRSKVF-----------------------KKFWYGGSESIL------ 839

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                       L  + +  N +  +L  G               N+  +Q  +  ++  
Sbjct: 840 ---------FNKLESIAEQDNPMTPVLGCG-------------ITNSLMKQNLKANSFLP 877

Query: 596 KLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                 +Q+   D   +L   M   ++       +++++HDEI     D D++  ++   
Sbjct: 878 SRVNWAIQSSGVDYLHLLCCSMNYLISMYNIEARLIISIHDEIRYLVADKDKYKLALALQ 937

Query: 650 L 650
           +
Sbjct: 938 I 938


>gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU121]
          Length = 1438

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 483 DAPEIEDVLTDFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 541 INTEYGKHGLNFLAKKYGVD 560


>gi|258567122|ref|XP_002584305.1| DNA polymerase gamma [Uncinocarpus reesii 1704]
 gi|237905751|gb|EEP80152.1| DNA polymerase gamma [Uncinocarpus reesii 1704]
          Length = 1140

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 88/347 (25%), Gaps = 80/347 (23%)

Query: 317 GRWSGCVFPPQN--------LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
            R SG    PQN        LP+         + + +   + ++       +   +++ V
Sbjct: 652 RRLSGDEI-PQNRSSHLGFILPQIIPMGTITRRAVENTWLTASNAKANR--VGSELKAMV 708

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT--- 425
            A  G   V AD+   E   +A + G+                   ++        T   
Sbjct: 709 KAPPGYAFVGADVDSEEL-WIASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTAKI 767

Query: 426 -KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   KV      Y  G K    +      +++     +  ++   E +      + 
Sbjct: 768 LGISRNNAKVFNYGRIYGAGLKFAATLLRQFNPSISEEETKLIASNLYRETKGTRTMRKM 827

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
           + E+       + F+    E      R +                  +       A  RR
Sbjct: 828 ISESPFWRGGTESFVFNKLEEFADQERPRTP----------------VLGAGITEALMRR 871

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
            +        +                                              +Q+
Sbjct: 872 FINKGSFMTSR------------------------------------------INWAIQS 889

Query: 605 VSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
              D   +L   M   +        + ++VHDEI     + D++ A+
Sbjct: 890 SGVDYLHLLIVSMDFLIRRFNIDARLAISVHDEIRYLVKEEDKYRAA 936


>gi|89052685|ref|YP_508136.1| DNA polymerase III, epsilon subunit [Jannaschia sp. CCS1]
 gi|88862234|gb|ABD53111.1| DNA polymerase III epsilon subunit [Jannaschia sp. CCS1]
          Length = 231

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 51/178 (28%), Gaps = 31/178 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--- 57
           M  + +D ET            +  E   V +F                +  MP+     
Sbjct: 1   MREIVLDTETTGLNP-YDMPRHRIVEIGAVEIFN-QVPTGKTYHQYIQPERDMPKEAFDV 58

Query: 58  ----------KEALEN---TDVTIVA------HNSYFERTV----LKACFNLDIPIHRWI 94
                     K    +     +  V       HN+ F+       L+      +P  + +
Sbjct: 59  HGIGEDFLADKPIFADIAQDFLDFVGGDQMVIHNAEFDMRFLNAELEWAGKHALPNDQAL 118

Query: 95  CTLVLAR--SNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPN 149
            TL +AR    G P++L A+     + +  + + G  L +        E    +    
Sbjct: 119 DTLKIARQKFPGSPASLDALCRRFGIDNSAREKHGALLDSEILAEVYLELTGGKQPDF 176


>gi|312076359|ref|XP_003140825.1| 3'-5' exonuclease [Loa loa]
 gi|307764011|gb|EFO23245.1| 3'-5' exonuclease [Loa loa]
          Length = 596

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 41  PVELWDCVHDPVMPQV--LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
            + ++D VH   +     +KE LE+  +  V H++    T+L   + +++   +   T V
Sbjct: 372 QIVVFDVVHSDTILLESGVKEILESEKIIKVIHDAKRVATLLAHRYAINLR--KIFDTQV 429

Query: 99  LARSN 103
                
Sbjct: 430 AHAIL 434


>gi|302916517|ref|XP_003052069.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
           77-13-4]
 gi|256733008|gb|EEU46356.1| hypothetical protein NECHADRAFT_92603 [Nectria haematococca mpVI
           77-13-4]
          Length = 833

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 46/178 (25%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y     V L      +    +          +VL E  
Sbjct: 243 KEIAVDLE--------HHDFRSYIGL--VSLMQISTREKDWIVDTLQPWRHKLEVLNEVF 292

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +  V H +Y +   L+      + ++    T                 + L   ++
Sbjct: 293 TNPKIIKVFHGAYMDMVWLQRDLG--LYVNGLFDTFFA-------------CDQLHYPAK 337

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            +     L+++F   +  +     +             Y + D      I+ ++    
Sbjct: 338 SLAF---LLSKFVDFDADKQYQLADWRIRPIP-EEMMYYARSDTHYLLYIYDKVRNEL 391


>gi|30248167|ref|NP_840237.1| DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180052|emb|CAD84052.1| probable DNA polymerase III (epsilon chain) protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 232

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 54/199 (27%), Gaps = 50/199 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF----------------------D 38
           M  +F+D ET         G+        ++  A                         D
Sbjct: 1   MRYVFLDTETT--------GLDPALGH-RIVEIA-AVEVCNRRLTDRHFHRYLNPGRESD 50

Query: 39  DHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTV------LKACF 84
           +  + +     +          +     E + + ++ I  HN+ F+         L    
Sbjct: 51  EGALRVHGLTREFLRDKPVFQDVCSEFLEFIADAEIFI--HNAPFDVGFINRELDLIRFE 108

Query: 85  NLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
           ++     + I TLVLA+         L A+ E  ++ +        L+      E +  +
Sbjct: 109 SMQNHCLQIIDTLVLAKELHPGKRNNLDALCERYQIDNSHRTLHGALLDAELLAEVYLAM 168

Query: 143 YDRNKPNHREAWRLFGEYC 161
               +    E         
Sbjct: 169 TRGQESLLMEMDAPASRQA 187


>gi|317034839|ref|XP_001401279.2| DNA polymerase gamma [Aspergillus niger CBS 513.88]
          Length = 1135

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 88/341 (25%), Gaps = 65/341 (19%)

Query: 312 GASRTGRWSGCV--FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
           G + +G+    +    PQ +P  + +   ++        +  +       +   +++ + 
Sbjct: 654 GLTSSGKTDHRLGFILPQIIPMGTITRRAVENTWLTASNAKGN------RVGSELKAMIK 707

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD-- 427
           A  G   V AD+   E   +A + G+                  +++        T    
Sbjct: 708 APPGYSFVGADVDSQEL-WIASLVGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTAQIL 766

Query: 428 --QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R   KV      Y  G K    +      +++            +E +      R +
Sbjct: 767 GISRNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSERQTQEVATKLYKETKGTRTTRRIL 826

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            E        + F+    E   +  R +   +                      A  RR 
Sbjct: 827 CEGPFWRGGTESFVFNKLEEFAEQERPRTPTL----------------GAGITEALMRRF 870

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           +        + N  +       L           ++   R+                   
Sbjct: 871 INKGSFMTSRINWAIQSSGVDYLHL-----LIVAMDYLIRRFNIAA-------------- 911

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                             + +TVHDEI     D D++ A++
Sbjct: 912 -----------------RLAITVHDEIRYLVKDEDKYRAAL 935


>gi|315103391|gb|EFT75367.1| 3'-5' exonuclease [Propionibacterium acnes HL050PA2]
          Length = 412

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSSTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T +  R   LP  +L  + E    ++
Sbjct: 88  A--GTQWILHAATQDMPCLAM---DGLRPDDLFDTELAGRLLNLPKVSLGPMVEHYCGVT 142

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W++   Y   DV +  ++ +++    
Sbjct: 143 LLKEHSASDWSRRPL----------------PRDWQV---YAALDVELLNDLREKILSDL 183

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  VD      ++ I D+      Q    L 
Sbjct: 184 HEAGKEEWARQEFAHLVEIAADLPSEEPG--VDPKRWRKISHIGDIRSRAGLQVAHDLW 240


>gi|92115747|ref|YP_575476.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
 gi|91798641|gb|ABE61016.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
          Length = 239

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 51/160 (31%), Gaps = 34/160 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV +F                      AF   
Sbjct: 1   MREIVLDIETTGLDPLRG---DRVVEIGCVEIFNRMPTGQTFHRYINPERDMPQEAFAVH 57

Query: 39  DHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTV----LKACFNLDIPIHRW 93
               E       P+   ++ + LE   D  +V HN+ F+ +     L       I   R 
Sbjct: 58  GLSSEF--LAEKPLFTHIVDDFLEFIGDAPLVIHNASFDISFINAELDRLKMRTIGRDRL 115

Query: 94  ICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIA 131
           + TL+LAR      +  L  +     + + +  +   L+ 
Sbjct: 116 VDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLD 155


>gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 254

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 61/238 (25%), Gaps = 38/238 (15%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P+ +K  
Sbjct: 9   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPEAIKVH 68

Query: 59  ----EALENT-----------DVTI----VAHNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +            +       + HN+ F+   +       NL I  +     
Sbjct: 69  GITDEMLADKPDFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFRKLNLPIKTNDICTV 128

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKP 148
             TLV+AR         L A+   L + + K      L+                     
Sbjct: 129 TDTLVMARQMYPGKKNNLDALCSRLDIDNSKRTLHGALLDAEILADVYLAMTGGQTSLFD 188

Query: 149 NHREA-WRLFGEYCKGDVTVT----REIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
              +   +    + +    VT      +    E       E   L    +      D 
Sbjct: 189 ESEQDVIQQAVTHHQVKSAVTFSRNLRLLTPTEEELEAHLEYLKLINKKSKENCLWDR 246


>gi|87198139|ref|YP_495396.1| DNA polymerase III, epsilon subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133820|gb|ABD24562.1| DNA polymerase III, epsilon subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 230

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 50/180 (27%), Gaps = 41/180 (22%)

Query: 1   MATLFIDFETRSPID-----LTKCGI---------------------CKYAEDVCVILFA 34
           M  +  D ET          L + G                         AE   V   +
Sbjct: 2   MREIVFDTETTGLDPRSGDRLVEIGCIEMFNRVPTGAVFHCYFNPERDMPAEAEAVHGLS 61

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPI 90
             F        D          L   + ++   +VAHN+ F+   +      C    +  
Sbjct: 62  IAFLS------DKPKFAEKADDLLAFIADS--PMVAHNAGFDFGFINNELELCGREPVSR 113

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNK 147
            R + T+ +AR     +  +L A+     +  S + + G  L A        E    R  
Sbjct: 114 DRMVDTVAIARRKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQLYVELQGGRQI 173


>gi|262342127|gb|ACY54574.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 64/269 (23%), Gaps = 96/269 (35%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A+ G  +V AD++GIE R+L+                       A    +     
Sbjct: 13  RRLFMATPGLVMVGADVSGIELRMLSHYLARYNTYLGDNLLNGDIHQLNADKIGI----- 67

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G +       +    L+                        
Sbjct: 68  ---TRKLVKTVTYAFLYGAGNEKI---GYSYDRLLSPQKAKA------------------ 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                +K+A+ +    +S+L + +  A                 
Sbjct: 104 -----------------KGREIKEAFIEAIPGLSDLLSAVKSAA---------------- 130

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                      N   +    GR ++                          K    ++Q 
Sbjct: 131 -----------NRGFVKGIDGRKILVDSPH---------------------KALNYLLQG 158

Query: 605 VSRDILAEGMMNATKAG--YDIVLTVHDE 631
            +  +    M+ A         +  +HDE
Sbjct: 159 SAGVVAKRWMVIANDNPFCCSQLAFIHDE 187


>gi|210135714|ref|YP_002302153.1| DNA polymerase III subunit epsilon [Helicobacter pylori P12]
 gi|210133682|gb|ACJ08673.1| DNA polymerase III epsilon subunit [Helicobacter pylori P12]
          Length = 323

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     +    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 170

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 171 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 229 LSMRYSLSFLKELLGFG 245


>gi|251796459|ref|YP_003011190.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           JDR-2]
 gi|247544085|gb|ACT01104.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
           JDR-2]
          Length = 953

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 56/218 (25%), Gaps = 40/218 (18%)

Query: 1   MATLFIDFETRS---PIDLTKCGICKYAEDVCVI-------------------LFAFGFD 38
           M    +D ET       D+ + G+    +++ ++                   L     D
Sbjct: 1   MKFAVLDLETTGHSVSDDILQVGLAVLDDNLEIVETYSSFVRPTIEIPAFITQLTGIDAD 60

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95
                + D      +   L   LE+    +VAHN  F+   L            I R + 
Sbjct: 61  M----VADAPELDEVLMQLIPYLEDA--VLVAHNVNFDAGFLNQALDRCGYHPFIGRRLD 114

Query: 96  TLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           T+ L R          L AV E   ++  +            +         R  P    
Sbjct: 115 TIELLRILYPSITTYQLGAVTELFGIAHDQHHRADSDAIATAELFAQSVQKLRQLPLLTL 174

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
               F      D      +   +       +    +D 
Sbjct: 175 QRLSFLIDNGSD------LSWFMAETLKYAELHTSIDM 206


>gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
 gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           G11MC16]
          Length = 911

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 25/145 (17%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVI-LFAFGFDDH---PVELWDCVHDP 51
           M  + ID ET   +      + + G+    ED  ++  FA  F+     P+ +    +  
Sbjct: 3   MRFVIIDLETTGNVPKKGDRIIQLGM-AVVEDGSIVKRFASFFNPEQPIPLFIQQLTNID 61

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                      +              VAHN  F+   L+A              I T+ L
Sbjct: 62  EQTVEGAPLFADKADEITAMMEGAYFVAHNVDFDLPFLQAELERAGWPPFTGPTIDTVEL 121

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           AR          L  + + L L   
Sbjct: 122 ARIVLPTAESYKLGDLAKQLGLHHD 146


>gi|113868435|ref|YP_726924.1| DNA polymerase III subunit epsilon [Ralstonia eutropha H16]
 gi|113527211|emb|CAJ93556.1| DNA polymerase III epsilon subunit [Ralstonia eutropha H16]
          Length = 246

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 36/162 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L+     +  E  CV L                       A    
Sbjct: 4   MRQIVLDTETTG---LSAATGDRLIEIGCVELMNRRLTGRHLHFYVNPERDIDEGAIAVH 60

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
              VE   D      +   ++E +++ ++ I  HN+ F+   L      L +P       
Sbjct: 61  GITVEFLADKPRFAEVVNDIREFIQDAELII--HNAPFDLGFLDMEFQLLGLPPFRQHAG 118

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             I TL  AR        +L A+ + L +S+        L+ 
Sbjct: 119 NVIDTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLD 160


>gi|87199358|ref|YP_496615.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444]
 gi|87135039|gb|ABD25781.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444]
          Length = 405

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 65/257 (25%), Gaps = 29/257 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L     D     +        M  +L   ++N DV  V H    +  ++       
Sbjct: 40  PELCLVQIADDKEAAAIDPLAPGLDMSPLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGKT 99

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
              H    T +          + AV ++ ++    + E   L     KG        R  
Sbjct: 100 --PHPIFDTQIA---------MMAVSQSEQIGYSNLVE-SWLGLSIDKGARFTDWSRRPL 147

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
                      EY  GDVT   +IF +L     K     +LD  +               
Sbjct: 148 T------ERQIEYAIGDVTHLSKIFPKLLKRLIKTGRGEWLDIEMEKLADP--------- 192

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
            +    +   + Q++ + +       R               ++           L+   
Sbjct: 193 -ENYRTDMDTVWQKIRAPSRNPAVLGRLKSLAAWREREAMDKNIPKGRIMRD-ETLADIA 250

Query: 268 KLTPQAIQVFNNRMRAS 284
              P+           S
Sbjct: 251 SHPPREQHDLAKVRGLS 267


>gi|110633474|ref|YP_673682.1| ribonuclease D [Mesorhizobium sp. BNC1]
 gi|110284458|gb|ABG62517.1| ribonuclease D [Chelativorans sp. BNC1]
          Length = 392

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 55/228 (24%), Gaps = 30/228 (13%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L           +        +       + N  V  V H +  +  ++       
Sbjct: 37  PELCLIQMAAPGVTALVDPLADGMDL-APFFRLMGNEQVVKVFHAARQDIEIIYNRGG-- 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +  H    T V A   G   ++      L+++ + +++         +  +         
Sbjct: 94  LIPHPIFDTQVAAMVCGFGDSISYDQLVLRITGEHIDKTSRFTDWRHRPLS--------- 144

Query: 148 PNHREAWRLFGEYCKGDV--------TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                       Y   DV         +T E+ +        ++E+  L        +  
Sbjct: 145 -------EKQLRYALADVTHLIPVYAHLTTELQRGGREG-WLKEEMDVLTARETYDPHPD 196

Query: 200 DVALAHTLNQI--VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
           D      +     V++   +             +  R        L+ 
Sbjct: 197 DAWKRLKMRARKPVELAILQRIAAWREREARERNVPRGRIMKDDALYE 244


>gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           leachii PG50]
 gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           leachii PG50]
          Length = 1480

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 51/200 (25%), Gaps = 47/200 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFA---FGFDDHPVELWDC-----VHDPVM 53
             +F D ET               E   +I F    + F     +  D            
Sbjct: 432 KMVFFDLETTGLSP----------ELDEIIEFGAIEYNFKTGERKKIDILIKPKAKLKDF 481

Query: 54  PQVL----KEALENT-----------DVTI----VAHNSYFERTVLKAC---FNLDIPIH 91
            + L    +E LEN             +      VAHN+ F+ T L             +
Sbjct: 482 TKKLTNINEEMLENKPGIEVAFKQINQIIKDAILVAHNANFDYTFLSHWSQKLGYGKLEN 541

Query: 92  RWICTLVLARSNGL---PSALKAVGEALKLSSQKM----EEGKELIARFCKGETHECLYD 144
             I TL ++R          L ++ + + +S         +    I         +    
Sbjct: 542 TIIDTLTISRIIYPELKSHRLGSLAKRVNISYDPSVAHRGDYDADILADIYERMLDETRK 601

Query: 145 RNKPNHREAWRLFGEYCKGD 164
           + K      W         D
Sbjct: 602 KTKITIDSDWDKINPLNNID 621


>gi|257094696|ref|YP_003168337.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047220|gb|ACV36408.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 729

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNGL-- 105
             +    +    +    +V HN+ F+   L   +    +       + TL+L+       
Sbjct: 608 DTVLPQFQTFCAD--TVLVGHNAAFDMRFLQLKEKQTGVRFD-QPVLDTLLLSAVLHPNQ 664

Query: 106 -PSALKAVGEALKLS 119
               L+A+ E L +S
Sbjct: 665 NSHRLEAIAERLGVS 679


>gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           carboxidivorans P7]
 gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           carboxidivorans P7]
          Length = 1449

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 78/287 (27%), Gaps = 57/287 (19%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDCV 48
            ID  T   +DL   G     E +  I       D  V                 + +  
Sbjct: 421 SIDT-TYCVLDLETTGFSPVIEKITEIGI-MKIKDGKVIDKFSCFVNPKKPIPPRVVEVT 478

Query: 49  H-------DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
           +       D    + +   + +   D  +VAHN+ F+   LK        D     ++ T
Sbjct: 479 NITDDMVRDAETIEQVFPKMLDFIKDSVLVAHNAEFDIGFLKHNARVLGYDFDFT-YLDT 537

Query: 97  LVLARSNGL---PSALKAVGEALKL--------SSQKMEEGK-------ELIARFCKGET 138
           L LA+          L  + + L +                K       +L  R  +   
Sbjct: 538 LTLAQELFPDFKTYKLGRIAKNLGIKVEVAHRALDDVDTTVKIFNVMLEKLKERGAETLQ 597

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
              +Y  ++   +E ++    Y      +             K     +LD         
Sbjct: 598 DVDVYGSDEAAKKEEYKKLKTYHA----IILAKDYVGLKNLYKLVSYSHLDYFYKKP--R 651

Query: 199 VDVALAHTLNQIVDVERTKLDQELES--LTYGLVSSSRCLEKLKTWL 243
           +  ++    ++ + +     + EL    L          + +   +L
Sbjct: 652 ILKSMYKKYSEGLILGSACSEGELYQAILLGKSDEQIEAIAQDYDYL 698


>gi|220932957|ref|YP_002509865.1| hypothetical protein Hore_21250 [Halothermothrix orenii H 168]
 gi|219994267|gb|ACL70870.1| hypothetical protein Hore_21250 [Halothermothrix orenii H 168]
          Length = 306

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 14/102 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLK 58
             + ID E         C      E   V      F ++     D  H          L+
Sbjct: 113 KVMGIDTE--YLKSNLDCIQYVTMEGFEVTSCGMIFTNN-----DLAHSVNPEEGIDYLR 165

Query: 59  EALEN--TDVTIVAHNSYFERTVLKACFNLDIP-IHRWICTL 97
           E + +   ++  V HN   +  V++  +   IP ++ +  T+
Sbjct: 166 EVIYDFEPEII-VGHNFNSDIKVMERAYGSPIPELYNFDDTM 206


>gi|314966730|gb|EFT10829.1| 3'-5' exonuclease [Propionibacterium acnes HL082PA2]
          Length = 412

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 52/239 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVM-PQVLKEAL 61
           + ID E              +       L     D     L D       +  + L +AL
Sbjct: 38  IAIDTE----------RAHGFRYSPRACLIQLRRDGSSTHLVDPLALGGAVGLKPLAKAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
                  + H +  +   L       +       T +  R   LP  +L  + E    ++
Sbjct: 88  A--GTQWILHAATQDMPCLAM---DGLRPDDLFDTELAGRLLNLPKVSLGPMVEHYCGVT 142

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K     +   R                     W++   Y   DV +  ++ +++    
Sbjct: 143 LLKEHSASDWSRRPL----------------PRDWQV---YAALDVELLNDLREKILSDL 183

Query: 180 SKEQELWYLDQTI------------NDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            +  +  +  Q               + G  VD      ++ I D+      Q    L 
Sbjct: 184 HEAGKEEWARQEFAHLVEIAADLPSEEPG--VDPKRWRKISHIGDIRSRAGLQVAHDLW 240


>gi|91775831|ref|YP_545587.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
 gi|91709818|gb|ABE49746.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
          Length = 231

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 32/160 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP--VELWDCVHDPVMPQVL- 57
           M  +F+D ET     L      +  E   V L      ++   V L          Q + 
Sbjct: 3   MRQIFLDTETTG---LYHAQGHRIIEIAGVELVNRRLTNNHFHVYLNPDREIDEAAQEVH 59

Query: 58  ---KEALENT---------------DVTIVAHNSYFERTVLKACF------NLDIPIHRW 93
               E L++                   ++ HN+ F+   L A        N++  +   
Sbjct: 60  GITLEFLQDKPRFADIVDEFLQFVSGADLIIHNAPFDIGFLNAELNRVGRQNIEHSVLEI 119

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           I TL +A+         L A+     + +        L+ 
Sbjct: 120 IDTLKMAKEMRPGQRNNLDALCRHYGIDNSSRTLHGALLD 159


>gi|116491633|ref|YP_811177.1| DNA polymerase III, epsilon subunit or related 3'-5' exonuclease
           [Oenococcus oeni PSU-1]
 gi|116092358|gb|ABJ57512.1| DNA polymerase III, epsilon subunit-like 3'-5' exonuclease
           [Oenococcus oeni PSU-1]
          Length = 177

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 35/146 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LF----AFGFDDHPVELW---DC 47
           M  L +DFET S    +   +      D  +      L     +F + +  +      D 
Sbjct: 1   MNFLAMDFETASSEPWSAVSLGLTIVRDNQIAQNWYSLIKPETSFSYWNTEINGLTADDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT------ 96
           +  P  P+V  +   L +    +V HN  F+  VLK     + L  P +  + T      
Sbjct: 61  LDSPKFPEVWADIKNLYDDYPVVVGHNVRFDNNVLKQTLKYYGLKTPRYLSLDTVSLPRK 120

Query: 97  ----LVLARSNGLPSALKAVGEALKL 118
               +V          L  V   L L
Sbjct: 121 FQPGMV-------NHKLDTVVSDLGL 139


>gi|327292550|ref|XP_003230973.1| DNA polymerase gamma [Trichophyton rubrum CBS 118892]
 gi|326466779|gb|EGD92232.1| DNA polymerase gamma [Trichophyton rubrum CBS 118892]
          Length = 1137

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 82/330 (24%), Gaps = 75/330 (22%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +          +   +++ V A  G   V AD+   E
Sbjct: 671 PQVIPMGTITRRAVENTWLTASNAK------PNRVGSELKAMVRAPPGYVFVGADVDSEE 724

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   ++        T       R   KV      Y
Sbjct: 725 L-WIASLVGDAQFQLHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRNNAKVFNYGRIY 783

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +++            +E +      R + EN       + F+  
Sbjct: 784 GAGLKFAATLLRQFNPSMSETETKAVAAKLYKETKGTRTTRRILSENPFLRGGTESFVFN 843

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +                  +       A  RR +        +      
Sbjct: 844 KLEEFAEQERPRTP----------------VLGAGITEALMRRFINKGGFMTSR------ 881

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 882 ------------------------------------INWAIQSSGVDYLHLLIISMDYLI 905

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                   + +TVHDEI     +TD++ A+
Sbjct: 906 RRFNLDARLAITVHDEIRYVVRETDKYKAA 935


>gi|308276816|gb|ADO26715.1| Hypothetical protein CpI19_1452 [Corynebacterium
          pseudotuberculosis I19]
          Length = 121

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 16 LTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH 71
          L K GI  YA+  D  ++LF +  D  PVE+ D V    +P  +  +L        AH
Sbjct: 3  LAKAGIYPYADHGDFELLLFGYLIDASPVEVIDLVSGEQLPSEVLVSLVGPADEFAAH 60


>gi|300858866|ref|YP_003783849.1| hypothetical protein cpfrc_01449 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300686320|gb|ADK29242.1| hypothetical protein cpfrc_01449 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302206573|gb|ADL10915.1| Conserved hypothetical protein [Corynebacterium
          pseudotuberculosis C231]
 gi|302331128|gb|ADL21322.1| Conserved hypothetical protein [Corynebacterium
          pseudotuberculosis 1002]
          Length = 117

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 16 LTKCGICKYAE--DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAH 71
          L K GI  YA+  D  ++LF +  D  PVE+ D V    +P  +  +L        AH
Sbjct: 3  LAKAGIYPYADHGDFELLLFGYLIDASPVEVIDLVSGEQLPSEVLVSLVGPADEFAAH 60


>gi|262342309|gb|ACY54665.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 10/149 (6%)

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                 R   I + G+ +V ADLAGIE R+L+          A                +
Sbjct: 7   PSGHRFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARCDNGRYADILLNGDIH 59

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
              A      R + K +  A  Y  G +       +    L++ A   K     + + +A
Sbjct: 60  QVNADKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEA 116

Query: 479 ENFCRWMQENHPEHAIEDLFIGTACERVK 507
            +    + E   + +           ++ 
Sbjct: 117 IDGLDKLLEAIKKASERGFIKALDGRKII 145


>gi|311069195|ref|YP_003974118.1| DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942]
 gi|310869712|gb|ADP33187.1| DNA polymerase III subunit epsilon [Bacillus atrophaeus 1942]
          Length = 208

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 67/190 (35%), Gaps = 32/190 (16%)

Query: 1   MATLFIDFET--RSPIDLTKCGICKYAEDVCVI-----LFA------FGFDDHPVELWD- 46
           M  + IDFET   S       G+  + E+  ++     L          F+   +   D 
Sbjct: 1   MRIVSIDFETANSSRNSACSLGMTIF-ENSSIVMNHEWLIQPKQNRFHSFNTA-LHGIDE 58

Query: 47  --CVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLV 98
               ++P   +    +K  L N    ++AHN+ F+ +VL++    + LD P   + CTL 
Sbjct: 59  NMVANEPRFDELWPEIKPYLTNG--LVIAHNASFDISVLRSTLDDYGLDYPEFEYTCTLQ 116

Query: 99  LARSN---GLPSALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           +A+ +        L  + + +          E+ K  +  F   +         +  +  
Sbjct: 117 MAKRHWKELESYKLSFLADRINFRFNHHNAREDSKAAMLIFLHIQEQYKALHFTELLNHL 176

Query: 153 AWRLFGEYCK 162
             +    Y  
Sbjct: 177 DIKKGTLYAG 186


>gi|284926360|gb|ADC28712.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 264

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 58/201 (28%), Gaps = 46/201 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M       +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 79  IDGQNEKEMIANFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 138

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
                        L+ +   G       L  +   + L  +    G E++          
Sbjct: 139 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKL-------- 188

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL----DQTINDRG 196
                    +        EYC+ DV  T  +F + E + +   E  Y+            
Sbjct: 189 --------FYENKLEKIHEYCESDVLNTYMLFLKYELIKANVDEEDYVGFLSYMRDFLCA 240

Query: 197 YCVDVALAHTLNQIVDVERTK 217
              D +      +  + E +K
Sbjct: 241 KKSDRSYTEVFAKACESEISK 261


>gi|108563906|ref|YP_628222.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPAG1]
 gi|107837679|gb|ABF85548.1| DNA polymerase III epsilon subunit [Helicobacter pylori HPAG1]
          Length = 323

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     L    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 170

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 171 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 229 LSMRYSLSFLKELLGFG 245


>gi|13476899|ref|NP_108468.1| ribonuclease D [Mesorhizobium loti MAFF303099]
 gi|14027660|dbj|BAB53929.1| ribonuclease D [Mesorhizobium loti MAFF303099]
          Length = 383

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 19/163 (11%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           + L           L D +   +        + N  V  V H +  +  ++      D+ 
Sbjct: 39  LCLIQMAAPGVTA-LIDPLSPDINLAPFFRLMANEAVVKVFHAARQDIEIIV-HLG-DLV 95

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            H    T V A   G   +                   +L+ R       +     +  +
Sbjct: 96  PHPVFDTQVAAMVCGFGDS---------------VSYDQLVQRITGARLDKSSRFTDWRH 140

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
              + +   +Y   DVT   E+++ L    ++E    +L++ +
Sbjct: 141 RPLSDKQL-DYALADVTHLIEVYQHLSAELARENRAHWLNEEM 182


>gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus thermodenitrificans NG80-2]
 gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 911

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 25/145 (17%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVI-LFAFGFDDH---PVELWDCVHDP 51
           M  + ID ET   +      + + G+    ED  ++  FA  F+     P+ +    +  
Sbjct: 3   MRFVIIDLETTGNVPKKGDRIIQLGM-AVVEDGSIVKRFASFFNPEQPIPLFIQQLTNID 61

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                      +              VAHN  F+   L+A              I T+ L
Sbjct: 62  EQTVEGAPLFADKADEITAMMEGAYFVAHNVDFDLPFLQAELERAGWPPFTGPTIDTVEL 121

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           AR          L  + + L L   
Sbjct: 122 ARIVLPTAESYKLGDLAKQLGLHHD 146


>gi|285018846|ref|YP_003376557.1| ribonuclease d protein [Xanthomonas albilineans GPE PC73]
 gi|283474064|emb|CBA16565.1| probable ribonuclease d protein [Xanthomonas albilineans]
          Length = 361

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/326 (11%), Positives = 78/326 (23%), Gaps = 48/326 (14%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L      +  + +   +    MPQ L 
Sbjct: 22  IGLDTEFVRERTYW---------------PQLALVQMAVAEEILLIDPLIPG--MPQALA 64

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +  + H++  +    K              T + A   G+ + +      L +
Sbjct: 65  PWLSDPGILKIMHSASEDLVTFKCACG--TLPRPLFDTQIAAGLAGIGAGMGYQKLVLDI 122

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   + +G+       +  +                    EY   DV     +   L   
Sbjct: 123 TGIHLTKGETRSDWLRRPLSPAQ----------------LEYAADDVRHLFALHDTLHAR 166

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAH---TLNQIVDVERTKLDQELESLTYGLVSSSR- 234
                   +L +        V+         L+        +  Q           +   
Sbjct: 167 LQALDRSTWLQEDGERLLGTVEQEEGERWPHLSMRAAQFMERPAQLRLLRLLRWRDAQAR 226

Query: 235 -CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF--NNRMRASRSAVLKL 291
                    L  E    L        ++ L +     PQA +          +     + 
Sbjct: 227 HSDRPRSWILDNELATTLARF-PPDDRQGLQALLDKHPQAPRKLGDALWQALTTPLPDEA 285

Query: 292 NTLVEAMNSDGRLRGTLQFLGASRTG 317
           +  +   +SDG      +   A  T 
Sbjct: 286 DAPLAQASSDGHKATLKRLQDAVATR 311


>gi|113460879|ref|YP_718946.1| ribonuclease D [Haemophilus somnus 129PT]
 gi|112822922|gb|ABI25011.1| ribonuclease D [Haemophilus somnus 129PT]
          Length = 381

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 102/378 (26%), Gaps = 52/378 (13%)

Query: 3   TLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
            + +D E   T+S     K G+ +             +D   V L D            +
Sbjct: 35  VIALDTEFVRTKSFYP--KLGLIQL------------YDGEQVSLIDPFELSDF-SPFIQ 79

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L N  VT V H    +  V +  F         + T ++A           +   LK  
Sbjct: 80  LLANQKVTKVLHACSEDLEVFQHYFQQL--PTPMLDTQIMAAFL-QHGNSIGLAILLKH- 135

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                        + K E  + +   N      +  +   Y   DV     +++R++   
Sbjct: 136 -------------YFKLEIDKGISRTNWLARPLS-DVQLHYAAADVWYLLPLYQRMQQKL 181

Query: 180 SKEQELWYLDQTIN----DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
           ++      +               D   A+          ++    L+ L       +  
Sbjct: 182 AQTSWQSAVQNDCENLLNKYTQIKDSDNAYFSISGAWKLNSQELMRLKLLAKWRQEEAIK 241

Query: 236 LE-----KLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
                   ++    +    H    T       LS  +       ++     +A+++    
Sbjct: 242 RNLALNFVVRAEHLILLAQHNPKYTSQLLSIGLSPLEVRIHG-KKILQLLEKANKAPAYD 300

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
               +  +  D R R  ++ L A+           P +LP    S + +   +       
Sbjct: 301 YPPPILRVTDDHRYRVAIKLLQATL------REITPADLPTEVLSTKRMLDQLIKWHWIK 354

Query: 351 TSDPDPLQIISDCVRSCV 368
             +P  L  +    R   
Sbjct: 355 QDNPHDLPDLLCGWRREF 372


>gi|229523996|ref|ZP_04413401.1| ribonuclease D [Vibrio cholerae bv. albensis VL426]
 gi|229337577|gb|EEO02594.1| ribonuclease D [Vibrio cholerae bv. albensis VL426]
          Length = 381

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 40/147 (27%), Gaps = 21/147 (14%)

Query: 50  DPVMPQV---LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
           DP +        E L++T V  V H    +  V +  F         + T ++A   G  
Sbjct: 64  DPTVLDEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDTQIMAAFLGYG 121

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            +                   +L     K E+      R             EY   DV 
Sbjct: 122 LSTGFAALV----------QDQLQVELDKSESRTDWLARPLS------DKQLEYAAADVF 165

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTIN 193
               ++++L    ++        Q   
Sbjct: 166 YLLPMYEKLVERVTQAGWWDAALQESE 192


>gi|225012125|ref|ZP_03702562.1| conserved hypothetical protein [Flavobacteria bacterium MS024-2A]
 gi|225003680|gb|EEG41653.1| conserved hypothetical protein [Flavobacteria bacterium MS024-2A]
          Length = 238

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 52/225 (23%), Gaps = 69/225 (30%)

Query: 2   ATLFIDFETRSPID------------LTKCGICKYAEDV----------------CVILF 33
             LF+D ET                   +    +  E+                  ++  
Sbjct: 9   KILFLDIETVPLYPNFEDAPEVEQRYFEEKTAYQRKENFSPQEFYNRAGIWAEFGKIVCI 68

Query: 34  AFGFDDHPVELWDC------VHDPVMPQVLK----EALENTDVTIVAHNSY-FERTVLKA 82
           + G+     +  D         +  +    K    +   +       HN+  F+   +  
Sbjct: 69  SVGYFGPQKKSRDFRLKTFKGEEATLLNEFKVLVEQYFNSPKHLFCGHNAKEFDFPFIAR 128

Query: 83  CFNLD----------IPIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEG 126
              +                W      TL L R        +LK +   L + S K    
Sbjct: 129 RMLIHQISIPKSLQLFNKKPWEVPHLDTLHLWRLGDYKHYTSLKLMAYVLNIPSPKD--- 185

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                        +     +     +       YC+ DV    +I
Sbjct: 186 -----------DIDGSQVADVFYKEKDINRIAVYCEKDVVTVAQI 219


>gi|254502050|ref|ZP_05114201.1| ribonuclease D [Labrenzia alexandrii DFL-11]
 gi|222438121|gb|EEE44800.1| ribonuclease D [Labrenzia alexandrii DFL-11]
          Length = 392

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 57/187 (30%), Gaps = 29/187 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E           + +      + +           + D + + +  +   + +
Sbjct: 21  DYVTVDTE----------FLRETTFWPKLCVIQMA-GTEMAFIVDALAEGLDLEPFFDLM 69

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  VT V H +  +  ++       +       T V A   G   ++       K++  
Sbjct: 70  RDDSVTKVFHAARQDIEII-YHLG-GLIPAPLFDTQVAAMVCGFGDSISYDQLVYKVTGA 127

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           ++++         +  T                    +Y   DVT  R+ F+ L+   ++
Sbjct: 128 RIDKSSRFTDWARRPLT----------------AKQLDYALADVTHLRDAFQFLKANLAE 171

Query: 182 EQELWYL 188
           +    ++
Sbjct: 172 QNRTHWV 178


>gi|292655765|ref|YP_003535662.1| hypothetical protein HVO_1615 [Haloferax volcanii DS2]
 gi|291371980|gb|ADE04207.1| conserved hypothetical protein [Haloferax volcanii DS2]
          Length = 251

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 55/188 (29%), Gaps = 34/188 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEAL 61
           T F D ET               E   V   +F  D     L        +    L+E  
Sbjct: 84  TCFFDIETTGLSP----------ERDSVTTVSFYQDGETTTLV---SGEDLTADALREQF 130

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +    + + F+   L+  F++ I +      +   R+  L   LK + + + +   
Sbjct: 131 VDAKLIATFNGARFDVPFLETSFDVSIDVPHV-DLMYPCRTLDLTGGLKEIEKDVGIDRD 189

Query: 122 K-MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT--------VTREIF 172
           +    G++ +  + + E             + A      Y + D          VT  + 
Sbjct: 190 RPDISGRDAVRLWREYERG----------DQSALDTLVSYNREDAVNLERLMETVTGRLH 239

Query: 173 KRLEPLSS 180
            R      
Sbjct: 240 DRACEGLD 247


>gi|223939512|ref|ZP_03631388.1| 3'-5' exonuclease [bacterium Ellin514]
 gi|223891784|gb|EEF58269.1| 3'-5' exonuclease [bacterium Ellin514]
          Length = 372

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 23/175 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E  S        +  Y E VC++       D    L D +   +    L +    
Sbjct: 37  VALDTEADS--------LHAYPEKVCLLQITTPLGDE---LIDPLSG-INLDPLLDTF-- 82

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-AL-KAVGEALKLSSQ 121
               ++ H S ++  +L+              T++ +R  G     L   V   L ++ +
Sbjct: 83  GGHELIMHGSDYDLRLLRKHHAFV--PKAIFDTMLASRLLGHTQFGLVHLVAHYLGVTLE 140

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K  +  +   R           +          +   +  K D+ V   +    E
Sbjct: 141 KGSQKADWAKRPLTPRMEAYARNDTHY-----LKHLADRLKSDLEVKGRLGWHQE 190


>gi|225629116|ref|ZP_03787149.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella ceti str. Cudo]
 gi|237817070|ref|ZP_04596062.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           abortus str. 2308 A]
 gi|225615612|gb|EEH12661.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella ceti str. Cudo]
 gi|237787883|gb|EEP62099.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
           abortus str. 2308 A]
          Length = 248

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 39  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 97

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 98  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 154

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 155 DGARRLWRGDSTKLDHCLAKIGL 177


>gi|222637126|gb|EEE67258.1| hypothetical protein OsJ_24424 [Oryza sativa Japonica Group]
          Length = 949

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 45/179 (25%), Gaps = 30/179 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E  S                   L           L D +    +  +L+   
Sbjct: 165 KAFAVDTEQHSLRSFL----------GYTALMQISTQKAD-YLIDTIALHDVMSILRPVF 213

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +  + H +  +   L+   +  I +     T                 +A ++ S+
Sbjct: 214 ANPSICKIFHGADNDVLWLQR--DFHIYVVNMFDT----------------AKACEVLSK 255

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
             +    L+  +C   T + +   +            +Y + D      I   L     
Sbjct: 256 PQKSLAYLLELYCGVTTDKTMQREDWRLRPLTPE-MIQYARCDAHYLLYIANCLASELH 313


>gi|218199707|gb|EEC82134.1| hypothetical protein OsI_26176 [Oryza sativa Indica Group]
          Length = 949

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 45/179 (25%), Gaps = 30/179 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E  S                   L           L D +    +  +L+   
Sbjct: 165 KAFAVDTEQHSLRSFL----------GYTALMQISTQKAD-YLIDTIALHDVMSILRPVF 213

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +  + H +  +   L+   +  I +     T                 +A ++ S+
Sbjct: 214 ANPSICKIFHGADNDVLWLQR--DFHIYVVNMFDT----------------AKACEVLSK 255

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
             +    L+  +C   T + +   +            +Y + D      I   L     
Sbjct: 256 PQKSLAYLLELYCGVTTDKTMQREDWRLRPLTPE-MIQYARCDAHYLLYIANCLASELH 313


>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
 gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
          Length = 1442

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 487 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 544

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 545 INTEYGKHGLNFLAKKYGVE 564


>gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1449

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 34/147 (23%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVI---------LFAF--------GFDDHPV 42
           +  D ET         + + G  K      +I           +            +  V
Sbjct: 423 VVFDIETTGLNSHTNKIIEIGAVKIKA-GRIIDRYSQLINPGISIPYHITEITSITNEQV 481

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLV 98
              +      +     + + +    +VAHN+ F+   +K       N+D+  +  I TL 
Sbjct: 482 A--NQPKIDEVIGKFVDFIGDA--VLVAHNAPFDMGFIKRDIKEYLNIDLE-NSVIDTLQ 536

Query: 99  LARSNGLP---SALKAVGEALKLSSQK 122
           +AR          L  + ++L L+ +K
Sbjct: 537 MARDLFPDFKKYGLGDLNKSLGLALEK 563


>gi|156083893|ref|XP_001609430.1| exosome component 10 [Babesia bovis T2Bo]
 gi|154796681|gb|EDO05862.1| exosome component 10, putative [Babesia bovis]
          Length = 879

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 63/223 (28%), Gaps = 35/223 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E              Y   VC++      DD    + D          L +   
Sbjct: 337 IVAIDVE--------HHSTQSYRGFVCLVQITGADDD---WVIDPFSIFDEMWRLNDVTT 385

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--SALKAVGEA-LKLS 119
           +  +  V H +  +   L+  F   + +     TL  A    L    +L ++    L + 
Sbjct: 386 DPRILKVMHGAESDILWLQRDFG--VYVVNLFDTLKAADVLCLSCGHSLSSLVRHFLGIH 443

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             K  +  +                R  P      R    Y   D     +++  L+  +
Sbjct: 444 LDKSYQLADW-------------RIRPIP------RDMLTYATADTHYLLDLYSALKNTA 484

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
            ++   + +   +      +   +  +    +   R  +  E+
Sbjct: 485 LEQDLKYNIPGMVGCFDNHIWRIMLASKKVCLRQYRDPVFNEI 527


>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
 gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis RP62A]
 gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 1436

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 481 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 538

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 539 INTEYGKHGLNFLAKKYGVE 558


>gi|58265702|ref|XP_570007.1| PM-scl autoantigen [Cryptococcus neoformans var. neoformans JEC21]
 gi|57226239|gb|AAW42700.1| PM-scl autoantigen, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1016

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 17/132 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKE 59
             + +D E           +  YA      L      +    + D +     +      +
Sbjct: 329 KEIAVDLE--------HHDMRSYA--GFTCLIQISTRESD-WVVDTLALRKEIQQDKFGD 377

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-K 117
              +  +  V H +  +   L+   + +I +     T        +P  +L A+ +    
Sbjct: 378 VFTDPTIVKVFHGADSDIIWLQR--DFEIFVVNLFDTYSACVVLEMPQRSLSALLQHYCN 435

Query: 118 LSSQKMEEGKEL 129
             + K  +  + 
Sbjct: 436 FEADKRYQRADW 447


>gi|53805082|ref|YP_113230.1| DNA polymerase III subunit epsilon [Methylococcus capsulatus str.
           Bath]
 gi|53758843|gb|AAU93134.1| DNA polymerase III, epsilon subunit [Methylococcus capsulatus str.
           Bath]
          Length = 267

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 51/192 (26%), Gaps = 45/192 (23%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       +T+     Y   +  +       D   
Sbjct: 1   MRQIVLDTETTGLDPKAGHRIIEIGCVELLDRRITQNRFHVYINPEREI-------DAGA 53

Query: 42  VELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NL 86
           +E+    ++          +       +  +   ++ HN+ F+   L             
Sbjct: 54  IEVHGLTNEFLAGMPVFRNIADDFLNFI--SGAELIIHNAAFDVGFLDHELSLLGENRGR 111

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                    TL +AR N      +L A+ +   + + + E    L+      + +  +  
Sbjct: 112 IADYCGICDTLAMARKNHPGQRNSLDALCKRYNVDNSRRELHGALLDAEILADVYLAMTG 171

Query: 145 RNKPNHREAWRL 156
                  EA   
Sbjct: 172 GQITMLLEADAE 183


>gi|134109437|ref|XP_776833.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259513|gb|EAL22186.1| hypothetical protein CNBC3240 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1016

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 17/132 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKE 59
             + +D E           +  YA      L      +    + D +     +      +
Sbjct: 329 KEIAVDLE--------HHDMRSYA--GFTCLIQISTRESD-WVVDTLALRKEIQQDKFGD 377

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-K 117
              +  +  V H +  +   L+   + +I +     T        +P  +L A+ +    
Sbjct: 378 VFTDPTIVKVFHGADSDIIWLQR--DFEIFVVNLFDTYSACVVLEMPQRSLSALLQHYCN 435

Query: 118 LSSQKMEEGKEL 129
             + K  +  + 
Sbjct: 436 FEADKRYQRADW 447


>gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU144]
          Length = 1438

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 483 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 541 INTEYGKHGLNFLAKKYGVE 560


>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
 gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus caprae C87]
          Length = 1442

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 487 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 544

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 545 INTEYGKHGLNFLAKKYGVE 564


>gi|313632670|gb|EFR99647.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           seeligeri FSL N1-067]
          Length = 928

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 44/160 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYATFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKDAPLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEE 125
              + + T+ LAR          L+ + +   L   K  +
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDKPHQ 151


>gi|315585931|gb|ADU40312.1| DNA polymerase III subunit epsilon [Helicobacter pylori 35A]
          Length = 287

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 43/144 (29%), Gaps = 38/144 (26%)

Query: 5   FIDFETRSPIDLTKCGICKYAED-----------------------VCVILFAFGFDDHP 41
           FID ET     L    +   A                           +   A       
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVRGGGIINRFETLVKVKSVPDYIAELTGIA------- 127

Query: 42  VELWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTL 97
               D ++ P + + L+E  L   +   VAHN+ F+   L   F   +        +CTL
Sbjct: 128 --YEDTLNAPSVHEALQELRLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTL 185

Query: 98  VLA--RSNGLPSALKAVGEALKLS 119
            L+      +  +L  + E L   
Sbjct: 186 DLSKRAILSMRYSLSFLKELLGFG 209


>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
 gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis SK135]
          Length = 1438

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 483 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 541 INTEYGKHGLNFLAKKYGVE 560


>gi|261838819|gb|ACX98585.1| DNA polymerase III epsilon subunit [Helicobacter pylori 51]
          Length = 323

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     L    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 170

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 171 PSAHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 229 LSMRYSLSFLKELLGFG 245


>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1442

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 487 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 544

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 545 INTEYGKHGLNFLAKKYGVE 564


>gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU028]
 gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis VCU045]
          Length = 1438

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 483 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 541 INTEYGKHGLNFLAKKYGVE 560


>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
 gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
          Length = 1442

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 487 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 544

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 545 INTEYGKHGLNFLAKKYGVE 564


>gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus epidermidis FRI909]
          Length = 1438

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 483 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 541 INTEYGKHGLNFLAKKYGVE 560


>gi|261750330|ref|ZP_05994039.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
 gi|261740083|gb|EEY28009.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
          Length = 233

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 24  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 82

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 83  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 139

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 140 DGARRLWRGDSTKLDHCLAKIGL 162


>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
 gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus capitis SK14]
          Length = 1438

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 483 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 540

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 541 INTEYGKHGLNFLAKKYGVE 560


>gi|239831040|ref|ZP_04679369.1| exonuclease [Ochrobactrum intermedium LMG 3301]
 gi|239823307|gb|EEQ94875.1| exonuclease [Ochrobactrum intermedium LMG 3301]
          Length = 214

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 37/190 (19%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAED--------------------VCVILFAFGFD 38
             + +D ET   +    +   G  K   D                       +    G+D
Sbjct: 15  RVIVVDTETTGLLPYDRIVTIGAVKIEGDDFLHQSLHLIFDPRKDSHPQAEAV---HGYD 71

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWIC 95
           +      D   D  +   +++  +  D  IVAHN+ F+   ++  F    +D+  H   C
Sbjct: 72  NWMTRYQDLFSD--LAAPIRKWFDWAD-EIVAHNADFDMRYVQREFRKAEVDMLPHPVFC 128

Query: 96  TLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           T+  +R    G  + L      + LS      G    A    G        +       +
Sbjct: 129 TMERSREIWSGQSAKLDDCLARIGLSRIGKRHGALEDAYLTAGLYLHQRGIKKSLPKVNS 188

Query: 154 W---RLFGEY 160
           W   +    Y
Sbjct: 189 WSPPKNLKPY 198


>gi|217032955|ref|ZP_03438429.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
 gi|216945324|gb|EEC23998.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
          Length = 287

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     +    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 75  FIDLETTGSCPIKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 134

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 193 LSMRYSLSFLKELLGFG 209


>gi|297249562|ref|ZP_06933263.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|297173431|gb|EFH32795.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|326554073|gb|ADZ88712.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
          Length = 235

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 26  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 84

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 85  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 141

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 142 DGARRLWRGDSTKLDHCLAKIGL 164


>gi|289617399|emb|CBI55887.1| unnamed protein product [Sordaria macrospora]
          Length = 1509

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 82/331 (24%), Gaps = 31/331 (9%)

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
            Q         D  L   L    D        +L          +  + K     F +  
Sbjct: 575 IQRQMTPIEFDDPDLDERLRVDFDHRYF----KLPHKDGPTARCANPMAKGYLAYFEKGI 630

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTL 308
           L          +  L  N           + R R     V+  + L  +           
Sbjct: 631 L---SSEYPYAKEALEMNAS----CSYWISARERIKNQMVVYEDKLPPSQR--------- 674

Query: 309 QFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
                +      G    PQ +P  + +   +++       +  +       +   +++ V
Sbjct: 675 FATKGADDDTPVGGFILPQLIPMGTITRRAVERTWLTASNAKKN------RVGSELKAMV 728

Query: 369 IASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT--- 425
            A  G   V AD+   E   +A + G+                   +S        T   
Sbjct: 729 RAPPGYVFVGADVDSEEL-WIASVVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTAAI 787

Query: 426 -KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R   KV      Y  G K   ++      +L     +       +  + A+   + 
Sbjct: 788 LGITRNDAKVFNYGRIYGAGLKFASQLLRQFNPSLTEAETITIATKLYDATKGAKTNRKS 847

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           + +        + F+    E   +  R +  
Sbjct: 848 LYKRPFWRGGTESFVFNMLEEFAEQERPRTP 878


>gi|289435248|ref|YP_003465120.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171492|emb|CBH28036.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 928

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 44/160 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYATFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKDAPLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKMEE 125
              + + T+ LAR          L+ + +   L   K  +
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDKPHQ 151


>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
 gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
          Length = 1442

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 487 DAPEIEEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT 544

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 545 INTEYGKHGLNFLAKKYGVE 564


>gi|218437100|ref|YP_002375429.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7424]
 gi|218169828|gb|ACK68561.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC
           7424]
          Length = 838

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 43/137 (31%)

Query: 55  QVLKEALEN-----TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR----- 101
           + LKE + +     +   I+ HN+  +R VLK  F    +D    ++ C+LVLA+     
Sbjct: 52  KPLKEIIADFVGIASSNLIICHNANHDRQVLKNTFKKVGIDWQPFKFKCSLVLAQNTFPG 111

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                 +L+ + + L L                          + K  H         Y 
Sbjct: 112 LL--SYSLEYLSKQLTL------------------------KVKQKYFHPLH-AHAARY- 143

Query: 162 KGDVTVTREIFKRLEPL 178
             D   T ++++++   
Sbjct: 144 --DAEFTYQLYRKIMEQ 158


>gi|85709813|ref|ZP_01040878.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
 gi|85688523|gb|EAQ28527.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
          Length = 234

 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 60/218 (27%), Gaps = 41/218 (18%)

Query: 1   MATLFIDFETRSPID-----------------LTKCGICKYAEDVC---------VILFA 34
           M  +  D ET                      +          +           V   +
Sbjct: 1   MREVIFDTETTGLDPKTGDRMVEIGCVEMVGRVETGRSYHAYYNPERDMPSAAEAVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPI 90
             F +                 L E L +    +VAHN+ F+       L+      I +
Sbjct: 61  ISFLETK------PRFSETADELLEFLGDA--PLVAHNAGFDFGFLNAELERIGRESIAM 112

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNK 147
            R + T+ +AR     +  +L A+     +  S +++ G  L A        E    R  
Sbjct: 113 DRMVDTVAIARKKHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVELTGGRQI 172

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
                A  +   +   +  V   I +R +    + +  
Sbjct: 173 GLELAADTVEDPHAAAEKVVETVIGRRSDQPFREPRPH 210


>gi|226294174|gb|EEH49594.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb18]
          Length = 1183

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 90/365 (24%), Gaps = 75/365 (20%)

Query: 294 LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN---LPRPSRSHEELDQIITHLPTSI 350
            + A +         Q      TGR S      +    LP+         + + +   + 
Sbjct: 672 WISARDRITSQMVVYQNDIEKLTGR-SLSDPSLKQGFILPQVIPMGTITRRAVENTWLTA 730

Query: 351 TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
           ++       +   +++ V A  G   V AD+   E   +A + G+               
Sbjct: 731 SNAKANR--VGSELKAMVRAPPGYVFVGADVDSEEL-WIASLVGDAQFQIHGGNAIGFMT 787

Query: 411 TTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               ++        T       R   KV      Y  G K    +      ++       
Sbjct: 788 LEGTKAAGTDLHSKTAKILGISRNDAKVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKE 847

Query: 467 KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
             +   +E + A    + + +        + F+    E   +  R +             
Sbjct: 848 VASKLYKETKGARTNRKQLSDRPFWRGGTESFVFNKLEEFAEQERPRTP----------- 896

Query: 527 AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                +       A  RR +        +                               
Sbjct: 897 -----VLGAGITEALMRRFINKGSFMTSR------------------------------- 920

Query: 587 LTREYTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTD 640
                          +Q+   D   +L   M   +        + +TVHDEI     D D
Sbjct: 921 -----------INWAIQSSGVDYLHLLIISMDFLIRRFNLDARLAITVHDEIRYLVRDHD 969

Query: 641 EFNAS 645
           ++ A+
Sbjct: 970 KYRAA 974


>gi|1129171|emb|CAA88012.1| mitochondrial DNA polymerase gamma [Schizosaccharomyces pombe]
          Length = 1018

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 71/283 (25%), Gaps = 63/283 (22%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +   +++ + A +G   V AD+   E   +  + G+        T   +      +S   
Sbjct: 661 LGSELKAMIRAPDGYTFVGADVDSEEL-WIVALMGDSQFRLHGATALGMMTLEGKKSEGT 719

Query: 420 APAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
                T       R   KV      Y  G K    +       L T              
Sbjct: 720 DLHSKTAAILGVSRDSAKVFNYGRLYGAGLKHTTLLLMQMNPTLKTAEAKELAKKLYAST 779

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
           +  ++      +                            +++             +E  
Sbjct: 780 KGVKSKMSKRLQEMG-----------------------LPKLTFWSQGTESFVFNKLE-- 814

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                                  +  LPS R+ V      +       + +   + ++  
Sbjct: 815 ----------------------AMAQLPSPRTPVL-----DAGIQQALSSKNLSKNSFMT 847

Query: 596 KLTENIVQAVSRD---ILAEGMMNATKA---GYDIVLTVHDEI 632
                 +Q+ + D   +L   M +  K       + LTVHDE+
Sbjct: 848 SRVNWAIQSSAVDYLHLLLVSMNHLIKKYYLEARLSLTVHDEV 890


>gi|17988995|ref|NP_541628.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
 gi|260756615|ref|ZP_05868963.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
 gi|260760045|ref|ZP_05872393.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
 gi|260763284|ref|ZP_05875616.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882432|ref|ZP_05894046.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
 gi|261216075|ref|ZP_05930356.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
 gi|261217238|ref|ZP_05931519.1| DNA polymerase III [Brucella ceti M13/05/1]
 gi|261220458|ref|ZP_05934739.1| DNA polymerase III [Brucella ceti B1/94]
 gi|261313312|ref|ZP_05952509.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
 gi|261318701|ref|ZP_05957898.1| DNA polymerase III [Brucella pinnipedialis B2/94]
 gi|261320109|ref|ZP_05959306.1| DNA polymerase III [Brucella ceti M644/93/1]
 gi|265986499|ref|ZP_06099056.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
 gi|265992959|ref|ZP_06105516.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
 gi|265996191|ref|ZP_06108748.1| DNA polymerase III [Brucella ceti M490/95/1]
 gi|17984832|gb|AAL53892.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
           16M]
 gi|260670363|gb|EEX57303.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
 gi|260673705|gb|EEX60526.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676723|gb|EEX63544.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
 gi|260871960|gb|EEX79029.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
 gi|260917682|gb|EEX84543.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
 gi|260919042|gb|EEX85695.1| DNA polymerase III [Brucella ceti B1/94]
 gi|260922327|gb|EEX88895.1| DNA polymerase III [Brucella ceti M13/05/1]
 gi|261292799|gb|EEX96295.1| DNA polymerase III [Brucella ceti M644/93/1]
 gi|261297924|gb|EEY01421.1| DNA polymerase III [Brucella pinnipedialis B2/94]
 gi|261302338|gb|EEY05835.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
 gi|262550488|gb|EEZ06649.1| DNA polymerase III [Brucella ceti M490/95/1]
 gi|262763829|gb|EEZ09861.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
 gi|264658696|gb|EEZ28957.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
          Length = 233

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 24  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 82

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 83  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 139

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 140 DGARRLWRGDSTKLDHCLAKIGL 162


>gi|315444833|ref|YP_004077712.1| ribonuclease D [Mycobacterium sp. Spyr1]
 gi|315263136|gb|ADT99877.1| ribonuclease D [Mycobacterium sp. Spyr1]
          Length = 424

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 50/193 (25%), Gaps = 34/193 (17%)

Query: 15  DLTKCGICKYAEDVC-VILFAFG----------FDDHPVELWDCVHDPVMPQVLKEALEN 63
           DL   G   +A D      F +                V +    H     +VL      
Sbjct: 46  DLLASGTGPFAVDAERASGFRYSNRAYLVQIRRVGAGTVLIDPVSHGGDPMEVLAPVAAV 105

Query: 64  -TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQ 121
            +    V H +  +   L     + +       T +  R        L A+ + L     
Sbjct: 106 LSTDEWVLHAADQDLPCLAE---IGMRPTALYDTELAGRLANFDRVNLAAMVQRL----- 157

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                        +        D +K    + W     Y   DV V  ++ + +  +  +
Sbjct: 158 ----------LGLQLTKGHGAADWSKRPLPDEW---LNYAALDVEVLTDLREAIAAILDE 204

Query: 182 EQELWYLDQTIND 194
           + +  +  Q    
Sbjct: 205 QGKAEWARQEFEY 217


>gi|238784821|ref|ZP_04628822.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
 gi|238714237|gb|EEQ06248.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
          Length = 259

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 63/247 (25%), Gaps = 69/247 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 12  RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVINRRLTGRNFHVYVKPDRLVDP 65

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDI 88
                  + D  +    K    +             ++ HN+ F+   +         DI
Sbjct: 66  EAYGVHGISDEFLAD--KPTFADIAPEFLEFIRGAELIIHNAAFDIGFMDHEFRMLQQDI 123

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
           P     CT    L++AR         L A+ +   + + K      L+      E +  +
Sbjct: 124 PKTETFCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAM 183

Query: 143 ------------YDRNKPNHREAWRLFGE--------YCKGDVTVTR--EIFKRLEPLSS 180
                        D+++ +  +  +            Y   D        +   ++   S
Sbjct: 184 TGGQTSLTFSMEGDQSQNDSSDDIQRITRPASGLKIIYAAEDELAAHESRLDLVMKKGGS 243

Query: 181 KEQELWY 187
               +  
Sbjct: 244 CLWRMPL 250


>gi|261415282|ref|YP_003248965.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371738|gb|ACX74483.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327939|gb|ADL27140.1| ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain
           protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 1655

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 42/149 (28%), Gaps = 22/149 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             LF D E             K  E   ++       +  V              L++A 
Sbjct: 6   KFLFFDLE-------YNPETQKVREYGYILG------EEEV-------RERNTAKLEQA- 44

Query: 62  ENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            +    IV HN    +  +L+  F++D P    + TL+L+           + +    + 
Sbjct: 45  ASKAKYIVGHNVLRHDAPILRQYFSIDFPNIHALDTLMLSSLLFPRKPYHKLRKEYLHNE 104

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPN 149
            +     E      K          N P 
Sbjct: 105 DEPSNPLEDTKLCKKLLEDCIKKWDNYPW 133


>gi|332141113|ref|YP_004426851.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 239

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 43/164 (26%), Gaps = 38/164 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY----AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           M  + +D ET          I +       +  +       +   V +    H       
Sbjct: 1   MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTG-----NHFHVYINPGRHIEQEAIE 55

Query: 57  LK----EALENT-----------DVTI----VAHNSYFERTVLKACFNLDIPIHRWI--- 94
           +     E L +            +       V HN+ F+   +   F ++      I   
Sbjct: 56  VHGITNEFLTDKPTFAQVAQEFVNFIKGAQLVIHNAPFDVGFMDHEFGMEPSTKGVITNQ 115

Query: 95  -----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                 TL LAR         L A+ +   + +        L+ 
Sbjct: 116 ICDVLDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLD 159


>gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
 gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
          Length = 1449

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 11/119 (9%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL 105
            +  + ++ +E   +    +VAHN+ F+   L      + +    +  I TL LAR    
Sbjct: 487 SEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLELARYLYP 544

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                   +   L     + G  L          E          +EA    G     D
Sbjct: 545 EF------KRFGLGVLSKKFGVSLEQHHRAIYDAEATGHLAWIFVKEAMEKHGMLLHED 597


>gi|254282849|ref|ZP_04957817.1| ribonuclease D [gamma proteobacterium NOR51-B]
 gi|219679052|gb|EED35401.1| ribonuclease D [gamma proteobacterium NOR51-B]
          Length = 372

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 55/229 (24%), Gaps = 35/229 (15%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQ 55
             + ID E     T                   V L      D  V L D        P 
Sbjct: 23  DFVAIDTEFRRRDTFW---------------PEVALVQIATADQ-VWLIDPLPLTDTGP- 65

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAV 112
            L E L+ + +T V H++  +  V +A     +       T   A   G    L   K V
Sbjct: 66  -LAELLQKSTLTKVLHSAGEDLEVFQAWLG--VLPSPLFDTQKAAALLGYGFGLSYAKLV 122

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
               ++S  K E   + +              R                 GD      + 
Sbjct: 123 EAVCQVSLDKDETNSDWLV-----RPLTSAQCRYAAQDVTYLVDVYSRLLGDAGTQGRLE 177

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
             LE                    + +       L  ++D    +  + 
Sbjct: 178 WILEEGEGVSVGGRGPLAKFR-NAWKLQPEALAVLYGLLDWREQQARER 225


>gi|262212205|gb|ACY35719.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +           +        +   A  E  D  +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKIGHSCDKLRSSQAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 483 RWMQENHPEHAIEDLFIGTA 502
               +   E        G  
Sbjct: 124 LEAIKKASERGFIKALDGRK 143


>gi|225684515|gb|EEH22799.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb03]
          Length = 1220

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 90/365 (24%), Gaps = 75/365 (20%)

Query: 294  LVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN---LPRPSRSHEELDQIITHLPTSI 350
             + A +         Q      TGR S      +    LP+         + + +   + 
Sbjct: 709  WISARDRITSQMVVYQNDIEKLTGR-SLSDPSLKQGFILPQVIPMGTITRRAVENTWLTA 767

Query: 351  TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
            ++       +   +++ V A  G   V AD+   E   +A + G+               
Sbjct: 768  SNAKANR--VGSELKAMVRAPPGYVFVGADVDSEEL-WIASLVGDAQFQIHGGNAIGFMT 824

Query: 411  TTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
                ++        T       R   KV      Y  G K    +      ++       
Sbjct: 825  LEGTKAAGTDLHSKTAKILGISRNDAKVFNYGRIYGAGLKFAATLLRQFNPSMPEQQTKE 884

Query: 467  KTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQ 526
              +   +E + A    + + +        + F+    E   +  R +             
Sbjct: 885  VASKLYKETKGARTNRKQLSDRPFWRGGTESFVFNKLEEFAEQERPRTP----------- 933

Query: 527  AFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQ 586
                 +       A  RR +        +                               
Sbjct: 934  -----VLGAGITEALMRRFINKGSFMTSR------------------------------- 957

Query: 587  LTREYTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTD 640
                           +Q+   D   +L   M   +        + +TVHDEI     D D
Sbjct: 958  -----------INWAIQSSGVDYLHLLIISMDFLIRRFNLDARLAITVHDEIRYLVRDHD 1006

Query: 641  EFNAS 645
            ++ A+
Sbjct: 1007 KYRAA 1011


>gi|70919502|ref|XP_733432.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56505224|emb|CAH83005.1| hypothetical protein PC300270.00.0 [Plasmodium chabaudi chabaudi]
          Length = 199

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 51/191 (26%), Gaps = 24/191 (12%)

Query: 324 FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAG 383
              QN+    R    L        +  T       +  +             L+  D   
Sbjct: 3   PNLQNIHSKFRCTISLKNDDIKPISVKTKHVKNKSVNQN-------------LLTFDYKQ 49

Query: 384 IEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
           +E  V+A+++ +   LK     +    T            VTK+ R + K +   + Y  
Sbjct: 50  MELFVMAYLSFDSQLLKMLNNSDVFVETAKVLFN---TNDVTKELRRMTKTVIYGILYGQ 106

Query: 444 GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                        L ++        ++    + +   F +  +            IG   
Sbjct: 107 SENGL-----AKNLLVSENFAKSLIDNFFNFYPNVFKFMQKQKILVKNINSVYTLIGRKR 161

Query: 504 ---ERVKKAWR 511
                +K  +R
Sbjct: 162 LVDPTIKNKYR 172


>gi|313213333|emb|CBY37160.1| unnamed protein product [Oikopleura dioica]
          Length = 689

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 43/180 (23%), Gaps = 34/180 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            L +D E             +Y        L           L        M + L E  
Sbjct: 277 ELAVDLE-----------HHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMYK-LNEVF 324

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120
            N  +  + H S  +   L+  F   + +     T   A+   L   +L           
Sbjct: 325 ANPKIVKIFHGSRNDMLWLQRDFG--VYVVNLFDTFFAAKKLDLAKKSLD---------- 372

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L+  +CK    +     +             Y + D      ++ RL     
Sbjct: 373 -------YLLQHYCKIRLDKRFQLADWRMRPIPPN-MLRYARQDTHYLLYVYDRLRADLE 424


>gi|240850739|ref|YP_002972139.1| ribonuclease D [Bartonella grahamii as4aup]
 gi|240267862|gb|ACS51450.1| ribonuclease D [Bartonella grahamii as4aup]
          Length = 384

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/265 (10%), Positives = 72/265 (27%), Gaps = 29/265 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D  V L D +   +  Q   + + +  V  V H +  +   +       
Sbjct: 38  PQLCLIQLASPDVTV-LIDPIAPDIDLQPFFDLMIDKKVVKVFHAARQDIETI-YHLGGV 95

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           IP      T +     G   ++       + +   +++        C+  +         
Sbjct: 96  IP-SPLFDTQIAGSICGFGDSISYDQIVQRCTGHHLDKSSRFTDWSCRPLS--------- 145

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
                       Y   DVT  R+++  L+    K Q   ++D  +      ++       
Sbjct: 146 -------EKQLLYALADVTYLRDVYLLLKKRLEKNQRAHWMDDEL---TILLNPKTYDMP 195

Query: 208 NQIVDVERTKLDQE------LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
                 +     ++      L+ +       +R     +  +  +  L      +   + 
Sbjct: 196 EDEAWKKVKGQIKKPRELAVLQKIAAWREREARRYNMPRRHIIKDECLIEIATQQPKDES 255

Query: 262 VLSSNKKLTPQAIQVFNNRMRASRS 286
            L   + L     +  +      ++
Sbjct: 256 ALKRLRSLNKNWDK-LSIAQSLIKA 279


>gi|239831578|ref|ZP_04679907.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
 gi|239823845|gb|EEQ95413.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
          Length = 385

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      +H   L D +   +        + +  V  V H +  +  ++      D
Sbjct: 37  PELCLIQMASPNHTA-LVDALAPGLDLAPFFSLMADEKVVKVFHAARQDIEIV-FHLG-D 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       + V A   G          +     QK+           K         R  
Sbjct: 94  LIPSPVFDSQVAAMVCGFG-----DAISYDQLVQKVTGKH-----IDKSSRFTDWRRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
              +        Y   DVT  R+I+  L+    KE    ++++ +
Sbjct: 144 SEKQLD------YALADVTYLRDIYLYLKQELEKEGRSEWVNEEM 182


>gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 1480

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 25/139 (17%)

Query: 4   LFIDFETRS---PIDLTKCGICKYAEDVCVI-----------LFAFGFDD----HPVELW 45
           +  D ET       D              ++              F  ++        + 
Sbjct: 457 IVFDIETTGFSAKNDAITEIGAVKVVKGEIVDRFSTFVNPRRPIPFKIEELTHISDAMVM 516

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICTLVLARSN 103
           +      +     +  E+    IVAHN+ F+   ++     ++   +   I T+ +AR  
Sbjct: 517 NAPFIEDILPKFLDFCED--YIIVAHNAGFDTGFIRENAKKINKEYNPSIIDTVAMARLL 574

Query: 104 GLPSA---LKAVGEALKLS 119
                   L  V +AL +S
Sbjct: 575 LPELNRFKLDTVCKALNIS 593


>gi|291227793|ref|XP_002733868.1| PREDICTED: DNA-directed DNA polymerase gamma-like [Saccoglossus
            kowalevskii]
          Length = 1315

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/339 (11%), Positives = 94/339 (27%), Gaps = 30/339 (8%)

Query: 314  SRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEG 373
            + T               P              PT +T+       +   +++ V A  G
Sbjct: 885  TVTRHVEYDEDNNYGAILPKVVTAGTVTRRMVEPTWLTASNARPDRVGSELKAMVQAPPG 944

Query: 374  KKLVVADLAGIEARVLAWMAGEQWK-----LKAFETGEDLYVTTYARSFNVAPAQVTKDQ 428
               V AD+   E   +A + G+          AF               +   A      
Sbjct: 945  YHFVGADVDSQEL-WIASLLGDARFAGFHGCTAFGWMNLQGNKLERTDLHSKTADTIDIS 1003

Query: 429  RAIGKVMELALGYQGG----AKAFQKMASTTGLNLNTFAH--LVKTNSAPEEWEDAENFC 482
            R   KV      Y  G     +   +      ++        +       ++++  E+  
Sbjct: 1004 RDQAKVFNYGRIYGAGQPFAVRLLMQFNHRMSVDEARRKASTMYSATKGIKKYKLKEDVR 1063

Query: 483  RWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARK 542
              +++   +              +++  R K++   +   ++      T     +    +
Sbjct: 1064 EIVRKLLSKKKQSRWITNEELRTLRR--RLKYTLEYQYVEDIESNIPLTDLLDYSFDLTE 1121

Query: 543  RRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT---E 599
            +R+  +    +  N L  +  S       +           +R L         LT    
Sbjct: 1122 KREWKVGSESEMFNQLESIAMS------DEPRTPVLGCR-ISRALEPMSVNNEFLTSRIN 1174

Query: 600  NIVQAVSRD------ILAEGMMNATKAGYDIVLTVHDEI 632
             +VQ+ + D      +    +++         +++HDE+
Sbjct: 1175 WVVQSSAVDYLHLMLVCMRWLLDKYDIDGRFSISIHDEV 1213


>gi|270290674|ref|ZP_06196898.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4]
 gi|270280734|gb|EFA26568.1| DNA polymerase III subunit epsilon [Pediococcus acidilactici 7_4]
          Length = 178

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 29/146 (19%)

Query: 1   MATLFIDFETR-----SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW---------- 45
           M  + IDFET      S   +    +        +       +      W          
Sbjct: 1   MNFVAIDFETAAPARASACSIALTVVQNDQITDELYSL---INPETKFHWRNVQVHGIHE 57

Query: 46  -DCVHDPVMPQVLKEALE---NTDVTIVAHNSYFERTVLKACF-NLDIP--IHRWICTLV 98
            D    P  P+ L   L+     D  +VAHN+ F+ +VLK      ++    ++ + TL 
Sbjct: 58  ADVQDAPTFPE-LWPILQPFFTPDQLVVAHNANFDNSVLKKTLERYELNRLPYQTLDTLR 116

Query: 99  LARS---NGLPSALKAVGEALKLSSQ 121
            +RS   N     L  + + L +  +
Sbjct: 117 TSRSFFPNYPNHKLNTLCDNLGIELE 142


>gi|126725300|ref|ZP_01741142.1| ribonuclease D [Rhodobacterales bacterium HTCC2150]
 gi|126704504|gb|EBA03595.1| ribonuclease D [Rhodobacterales bacterium HTCC2150]
          Length = 385

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 52/197 (26%), Gaps = 41/197 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGF---DDHPVELWDCVHDPVMP 54
            + +D E     T                   + L        DD    L D +   +  
Sbjct: 22  YVTVDTEFLRERTYY---------------AKLCLVQLAMPGDDDSNAVLVDPLAKGLSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             L +   + +V  V H +  +  +        +       T V A   G       VG 
Sbjct: 67  APLYDLFRDENVVKVFHAARQDLEIF--FVEEGVIPSPLFDTQVAAMVCGFG---DQVG- 120

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
                       + L+ +  +    +     +      +      Y   DVT  R +++ 
Sbjct: 121 -----------YETLVRKIAREAVDKSSRFTDWSRRPLSDAQ-KTYALADVTHLRVVYEY 168

Query: 175 LEPLSSKEQELWYLDQT 191
           L     K +   ++ + 
Sbjct: 169 LAKELEKSKRTKWVTEE 185


>gi|67848464|gb|AAY82265.1| hypothetical protein At2g32420 [Arabidopsis thaliana]
          Length = 327

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 42/168 (25%), Gaps = 32/168 (19%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            +D E  S                   L      +    L D +    +  +L+    + 
Sbjct: 142 AVDTEQHSLRSFLGFTA----------LIQISTHEED-FLVDTIALHDVMSILRPVFSDP 190

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  V H +  +   L+   +  I +     T                 +A ++ S+   
Sbjct: 191 NICKVFHGADNDVIWLQR--DFHIYVVNMFDT----------------AKACEVLSKPQR 232

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREI 171
               L+   C          + +   +         Y + D      I
Sbjct: 233 SLAYLLETVC--GVATNKLLQREDWRQRPLSEEMVRYARXDAHYLLYI 278


>gi|163789521|ref|ZP_02183959.1| exonuclease [Carnobacterium sp. AT7]
 gi|159875053|gb|EDP69119.1| exonuclease [Carnobacterium sp. AT7]
          Length = 177

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 35/147 (23%)

Query: 1   MATLFIDFETRSP----------------------IDLTKCGICKYAEDVCVILFAFGFD 38
           M  + +DFET S                         L K     +  +V V        
Sbjct: 1   MNFVALDFETASNQRHSACSVALTVVRKSKIVDHYYSLIKPETEFFWRNVQVHGIT---- 56

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWIC 95
           ++ V+  D    P + + +K      +  IVAHN  F+R VL+     ++L  P  + +C
Sbjct: 57  ENDVK--DAPSFPEVWEQIKPFFT-ENKLIVAHNLPFDRGVLQGCLDYYDLPQPHFQTLC 113

Query: 96  TLVLARSN---GLPSALKAVGEALKLS 119
           T+  +R          L  V + L +S
Sbjct: 114 TVQSSRKLITEIPNHKLNTVCDHLNIS 140


>gi|322689603|ref|YP_004209337.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|320460939|dbj|BAJ71559.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 235

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 28/139 (20%)

Query: 2   ATLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDD--------------HPVE 43
             + +D ET         +T+ G  +  E   V  F    +                   
Sbjct: 33  DYVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAM 92

Query: 44  LWDCVHDPVMPQVLKEALENTDV-----TIVAHNSYFERTVLKACFNLDIPIHRW----I 94
           + D      +       L           IV HN  F+   L       I    +     
Sbjct: 93  VADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLD-YNTRHIAGCGFACADY 151

Query: 95  CTLVLARSNGLPSALKAVG 113
            T+ ++R+         + 
Sbjct: 152 DTMQISRALFPAQRHHRLA 170


>gi|295692577|ref|YP_003601187.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus crispatus ST1]
 gi|295030683|emb|CBL50162.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus crispatus ST1]
          Length = 177

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI-----LF--AFGFDDHPVELW-----DC 47
           M  + +DFET +    + C +      +  ++     +      FD   +++      D 
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNNKIVDRFYTVINPQMPFDARNIQIHQITAEDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V    + L    + + AHN+ F+  V++     + ++ P +  I TL  ++ 
Sbjct: 61  KNAPTMAEVWPHIKELYQPGMLVAAHNARFDTNVMRQSLARYGIEEPHYLVIDTLASSKL 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V EAL + 
Sbjct: 121 LEPELPDHKLDTVSEALNVE 140


>gi|227546804|ref|ZP_03976853.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|317481634|ref|ZP_07940669.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|322691564|ref|YP_004221134.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227212766|gb|EEI80647.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|316916924|gb|EFV38311.1| exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456420|dbj|BAJ67042.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 235

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 28/139 (20%)

Query: 2   ATLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDD--------------HPVE 43
             + +D ET         +T+ G  +  E   V  F    +                   
Sbjct: 33  DYVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAM 92

Query: 44  LWDCVHDPVMPQVLKEALENTDV-----TIVAHNSYFERTVLKACFNLDIPIHRW----I 94
           + D      +       L           IV HN  F+   L       I    +     
Sbjct: 93  VADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLD-YNTRHIAGCGFACADY 151

Query: 95  CTLVLARSNGLPSALKAVG 113
            T+ ++R+         + 
Sbjct: 152 DTMQISRALFPAQRHHRLA 170


>gi|291456364|ref|ZP_06595754.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Bifidobacterium breve DSM 20213]
 gi|291381641|gb|EFE89159.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Bifidobacterium breve DSM 20213]
          Length = 235

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 28/139 (20%)

Query: 2   ATLFIDFETRSPID----LTKCGI-----CKYAEDVCVIL---------FAFGFDDHPVE 43
             + +D ET         +T+ G       +  +    ++                    
Sbjct: 33  DYVALDLETTGFYPNRCAITEIGAVRVRGGRVVDQFQQLINPLCPIPRQITALTGITDAM 92

Query: 44  LWDCVHDPVMPQVLKEALENTDV-----TIVAHNSYFERTVLKACFNLDIPIHRW----I 94
           + D      +       L +++       IV HN  F+   L       I    +     
Sbjct: 93  VADHDPIDGVLPQFISWLADSNAAAETEPIVGHNVSFDLRFLD-YNTRHIAGCGFACADY 151

Query: 95  CTLVLARSNGLPSALKAVG 113
            T+ ++R+     +   + 
Sbjct: 152 DTMQISRALFPKQSHHRLA 170


>gi|23464698|ref|NP_695301.1| exonuclease [Bifidobacterium longum NCC2705]
 gi|189438951|ref|YP_001954032.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A]
 gi|239620784|ref|ZP_04663815.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132392|ref|YP_003999731.1| polc [Bifidobacterium longum subsp. longum BBMN68]
 gi|23325262|gb|AAN23937.1| possible exonuclease [Bifidobacterium longum NCC2705]
 gi|189427386|gb|ACD97534.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A]
 gi|239516360|gb|EEQ56227.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311772644|gb|ADQ02132.1| PolC [Bifidobacterium longum subsp. longum BBMN68]
          Length = 235

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 28/139 (20%)

Query: 2   ATLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDD--------------HPVE 43
             + +D ET         +T+ G  +  E   V  F    +                   
Sbjct: 33  DYVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAM 92

Query: 44  LWDCVHDPVMPQVLKEALENTDV-----TIVAHNSYFERTVLKACFNLDIPIHRW----I 94
           + D      +       L           IV HN  F+   L       I    +     
Sbjct: 93  VADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLD-YNTRHIAGCGFACADY 151

Query: 95  CTLVLARSNGLPSALKAVG 113
            T+ ++R+         + 
Sbjct: 152 DTMQISRALFPAQRHHRLA 170


>gi|16803938|ref|NP_465423.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes EGD-e]
 gi|224501301|ref|ZP_03669608.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes FSL R2-561]
 gi|16411352|emb|CAC99977.1| dinG [Listeria monocytogenes EGD-e]
          Length = 928

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPH 150


>gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
 gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
           MP145]
          Length = 1447

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 43/143 (30%), Gaps = 31/143 (21%)

Query: 3   TLFIDFETRSPID-----------LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-D 50
            +  D ET                + K G     E   +       +       +     
Sbjct: 416 YVCFDIETTGLSPRYHELIEFGATIIKNGSVISREQFFIK----AKNSLSAFTINLTGIT 471

Query: 51  PVMPQ----VLKEALEN-----TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV 98
             M +     LK AL        +   VAHNS F+   L   F    ++IP   +I TLV
Sbjct: 472 DQMLKNEGLELKPALLKISKLFENRIAVAHNSTFDMNFLFQKFLDNKMEIPKTTFIDTLV 531

Query: 99  LARSN---GLPSALKAVGEALKL 118
           ++R          L+     L +
Sbjct: 532 VSRLLFSKDSKHRLENYVGRLGI 554


>gi|75674304|ref|YP_316725.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
 gi|74419174|gb|ABA03373.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 239

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 45/163 (27%), Gaps = 40/163 (24%)

Query: 1   MATLFIDFETRSPIDL------------------TKCGICKYA--------EDVCVILFA 34
           M  + +D ET     L                  T     +Y         E   V   +
Sbjct: 1   MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTFHRYINPERDMPQEAFAVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPI 90
             F               +     E + +    +V HN+ F+ +     L       I  
Sbjct: 61  SDFLADK----PLFA--HVVDEFLEFIGDA--PLVIHNASFDISFINAELDRLKRQAIGR 112

Query: 91  HRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIA 131
            R + TL+LAR      +  L  +     + + +  +   L+ 
Sbjct: 113 DRLVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLD 155


>gi|46908132|ref|YP_014521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes serotype 4b str. F2365]
 gi|46881402|gb|AAT04698.1| ATP-dependent helicase DinG [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 928

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPH 150


>gi|88596045|ref|ZP_01099282.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190886|gb|EAQ94858.1| DNA polymerase III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315058737|gb|ADT73066.1| Exonuclease, possibly dna polymerase III epsilon subunit
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315927070|gb|EFV06421.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 326

 Score = 48.2 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 56/151 (37%), Gaps = 28/151 (18%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFA----FGFDDHPVELWDCVHDPVM- 53
            + ID ET         + +    +Y  +  +  F+      F    +  +  +++ ++ 
Sbjct: 34  YVVIDLETTGFDPKCNEILEIVALRYENNEKIAEFSKLIKVSFLPSFITEFTGINEDMIK 93

Query: 54  --------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-----WICTLVLA 100
                    +   + L++ D+  VAHN++F+   L    N    +++     ++ T+ L+
Sbjct: 94  NCNDISQTLKEFDDFLKSGDIL-VAHNAHFDINFL--YDNFMCYLNKPFSFDFVDTMRLS 150

Query: 101 RSNG---LPSALKAVGEALKLSSQKMEEGKE 128
           +          LK +     +  +    G++
Sbjct: 151 KLINQELAHHRLKDLCNQYNICYENAHRGEK 181


>gi|312872015|ref|ZP_07732095.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2062A-h1]
 gi|312873705|ref|ZP_07733751.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653310|ref|ZP_07906232.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners ATCC 55195]
 gi|325911899|ref|ZP_08174303.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 143-D]
 gi|311090805|gb|EFQ49203.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2052A-d]
 gi|311092468|gb|EFQ50832.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2062A-h1]
 gi|315489235|gb|EFU78875.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners ATCC 55195]
 gi|325476405|gb|EGC79567.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 143-D]
          Length = 177

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 26/181 (14%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVIL---FAFGFDDHPVELW---DC 47
           M    +DFET      S   L    +   K  +    ++     F  ++  +      D 
Sbjct: 1   MNFTAMDFETANRHYDSACSLALVLVRDNKIIDSFYTVINPQMPFDKNNIKIHGITANDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
              P M +V      L    + +VAHN+ F+  V+K     +N+  P +  I TL  +R+
Sbjct: 61  KDAPTMDEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTLATSRA 120

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    L  V   L +            A        E L  +N+    E  + F +
Sbjct: 121 LIPNLKNYRLDTVSNQLNID-----LWHHHNALSDSEACAEILIKQNQQFGDEQIKKFIK 175

Query: 160 Y 160
           Y
Sbjct: 176 Y 176


>gi|298737180|ref|YP_003729710.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
 gi|298356374|emb|CBI67246.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
          Length = 323

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     +    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 111 FIDLETTGSCPIKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 170

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 171 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 229 LSMRYSLSFLKELLGFG 245


>gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 857

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 21/124 (16%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+E  ++     V H +  +   L+  F + +       T   +R   L           
Sbjct: 294 LREVFKDPTKRKVMHGADRDIIWLQRDFGIYV--CNLFDTGQASRVLKLERN-------- 343

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRL 175
                     + L+  FC          +N              Y + D      I+  +
Sbjct: 344 --------SLEHLLRHFCGIT--ANKEYQNADWRLRPLTDEMLRYGREDTHYLLYIYDLM 393

Query: 176 EPLS 179
             + 
Sbjct: 394 RIML 397


>gi|148909222|gb|ABR17711.1| unknown [Picea sitchensis]
          Length = 317

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 57/195 (29%), Gaps = 31/195 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEAL 61
            +  D E    +DL + G         + +    F+D  V L D V    +  Q  K AL
Sbjct: 36  VIGFDCE---GVDLARYG--------RLCIMQLAFEDA-VYLVDAVEGGHLLMQACKPAL 83

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+  VT V H+   +   L   F   I ++  + T +         +L    E  K +  
Sbjct: 84  ESVYVTKVVHDCKRDSEAL--YFQYGIKLNNVVDTQIA-------YSLIEEQEGRKWAPD 134

Query: 122 KMEEGKELI---ARFCKGETHECLYDRNKPNHREAWR------LFGEYCKGDVTVTREIF 172
           +      L+            +           + W       +  +    DV     I+
Sbjct: 135 EYISFVGLLADPRYCGVSYAEKEEVRTLLREDPKFWEHRPLTYMMKKTAADDVRFLLHIY 194

Query: 173 KRLEPLSSKEQELWY 187
            ++            
Sbjct: 195 NKMIEKLELHSLWQL 209


>gi|260221145|emb|CBA29417.1| DNA polymerase III subunit epsilon [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 236

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 33/162 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET            +  E  CV L                       A    
Sbjct: 1   MRQIVLDTETTGFYANHPDNPDRMVEIGCVELVNRKLTGNNLHFYLNPGRDSDEGALRVH 60

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN------LDIPIH 91
               +   D      + Q L + +      I+ HN+ F+ + L               + 
Sbjct: 61  GLTTQFLSDKPRFEEIAQQLVDYV--GGAEIIIHNAPFDLSFLDMELGRTGRKPFKTCVA 118

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             + TLV+A+        +L A+ + L++ +        L+ 
Sbjct: 119 GVLDTLVMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLD 160


>gi|217963949|ref|YP_002349627.1| DnaQ family exonuclease/DinG family helicase [Listeria
           monocytogenes HCC23]
 gi|217333219|gb|ACK39013.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           monocytogenes HCC23]
 gi|307571481|emb|CAR84660.1| ATP-dependent helicase [Listeria monocytogenes L99]
          Length = 928

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPH 150


>gi|254931930|ref|ZP_05265289.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
 gi|293583482|gb|EFF95514.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
          Length = 928

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPH 150


>gi|254852803|ref|ZP_05242151.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
 gi|300763791|ref|ZP_07073788.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
 gi|258606130|gb|EEW18738.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
 gi|300515527|gb|EFK42577.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
          Length = 928

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPH 150


>gi|313233556|emb|CBY09728.1| unnamed protein product [Oikopleura dioica]
          Length = 790

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 43/180 (23%), Gaps = 34/180 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            L +D E             +Y        L           L        M + L E  
Sbjct: 277 ELAVDLE-----------HHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMYK-LNEVF 324

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120
            N  +  + H S  +   L+  F   + +     T   A+   L   +L           
Sbjct: 325 ANPKIVKIFHGSRNDMLWLQRDFG--VYVVNLFDTFFAAKKLDLAKKSLD---------- 372

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                   L+  +CK    +     +             Y + D      ++ RL     
Sbjct: 373 -------YLLQHYCKIRLDKRFQLADWRMRPIPPN-MLRYARQDTHYLLYVYDRLRADLE 424


>gi|226224503|ref|YP_002758610.1| ATP-dependent helicase [Listeria monocytogenes Clip81459]
 gi|254825606|ref|ZP_05230607.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
 gi|225876965|emb|CAS05674.1| Putative ATP-dependent helicase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|293594849|gb|EFG02610.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
 gi|328466248|gb|EGF37405.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 1816]
          Length = 928

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPH 150


>gi|224500250|ref|ZP_03668599.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes Finland 1988]
 gi|254831500|ref|ZP_05236155.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 10403S]
          Length = 928

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPH 150


>gi|114326875|ref|YP_744031.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
 gi|114315049|gb|ABI61109.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
          Length = 429

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 62/270 (22%), Gaps = 40/270 (14%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + ID E     T                   + +   G     V + D +   +    +
Sbjct: 67  YVTIDTEFMRERTYW---------------PELCVVQLG-GADCVAVIDTLAPELDLAPV 110

Query: 58  KEALENTDVTIVAHNSYFERTV-LKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            E L +  V  V H    +  + L    ++         T V A   G       VG   
Sbjct: 111 GELLADPAVIKVFHACRQDIEIFLLRFGSI---PQPMFDTQVAAMVAGFG---DQVG--Y 162

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                 +  G        K         R     +  +          V  T       E
Sbjct: 163 DTLVSSLTGGH-----IDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKE 217

Query: 177 PLSSKEQELWYLDQT-INDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRC 235
              +   E   +       R   V   +   L    +    +    L ++       ++ 
Sbjct: 218 GRLAWVSEEMAVLNDPATYRTDPV--TMWERLRPRTNNR--RYLGLLRAICAWREVEAQR 273

Query: 236 LEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
           L   +  L  +  L     T       L+ 
Sbjct: 274 LNIPRQRLIKDESLLEIAATSPADAESLAQ 303


>gi|302873810|ref|YP_003842443.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
 gi|307689948|ref|ZP_07632394.1| DNA polymerase III subunit epsilon [Clostridium cellulovorans 743B]
 gi|302576667|gb|ADL50679.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           cellulovorans 743B]
          Length = 306

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 25/142 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------------LFAFGFDD-HPVE 43
           M  + IDFET +    + C I     ++  V+                   G     P  
Sbjct: 1   MNFIAIDFETANEKRNSPCSIGIVVVKNGEVVERIHHLIKPKEMRFMPINIGIHGIRPAM 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           + +      +   +K     +   ++AHN+ F+ +VL+     +++++P  ++ICT+ LA
Sbjct: 61  VENEPEFHEVWAKIKHHFNES--LVIAHNASFDISVLRKSAELYDIELPSFKYICTMRLA 118

Query: 101 ---RSNGLPSALKAVGEALKLS 119
                    + L  V + L   
Sbjct: 119 KNFYRGIENAKLNTVNDFLGYE 140


>gi|195952795|ref|YP_002121085.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195932407|gb|ACG57107.1| DNA polymerase III, epsilon subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 196

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 40/157 (25%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-----------PVELWD----- 46
            + +D ET               E   + +FAF  +             P          
Sbjct: 12  YVVLDIETTGLNP---------DEHEIIEIFAFLVEKERITKQFHRLINPGFFIPRRITE 62

Query: 47  -------CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIPIH---RWI 94
                   +      + +    +N   D  IV HN  F+ + L   +++ +        I
Sbjct: 63  ITGITNAMLVGQPKVEGIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNSPNI 122

Query: 95  CTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKE 128
           CTL L++          L AV +   +  +++   K+
Sbjct: 123 CTLELSKKLIPNLKSYKLSAVADYFNIKYERLHRAKD 159


>gi|145224502|ref|YP_001135180.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK]
 gi|145216988|gb|ABP46392.1| 3'-5' exonuclease [Mycobacterium gilvum PYR-GCK]
          Length = 424

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 50/193 (25%), Gaps = 34/193 (17%)

Query: 15  DLTKCGICKYAEDVC-VILFAFG----------FDDHPVELWDCVHDPVMPQVLKEALEN 63
           DL   G   +A D      F +                V +    H     +VL      
Sbjct: 46  DLLASGTGPFAVDAERASGFRYSNRAYLVQIRRVGAGTVLIDPVSHGGDPMEVLAPVAAV 105

Query: 64  -TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQ 121
            +    V H +  +   L     + +       T +  R        L A+ + L     
Sbjct: 106 LSTDEWVLHAADQDLPCLAE---IGMRPTALYDTELAGRLANFDRVNLAAMVQRL----- 157

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                        +        D +K    + W     Y   DV V  ++ + +  +  +
Sbjct: 158 ----------LGLQLTKGHGAADWSKRPLPDEW---LNYAALDVEVLTDLREAIAAVLDE 204

Query: 182 EQELWYLDQTIND 194
           + +  +  Q    
Sbjct: 205 QGKAEWARQEFEY 217


>gi|240254568|ref|NP_850189.5| 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana]
 gi|330253588|gb|AEC08682.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 891

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/430 (10%), Positives = 107/430 (24%), Gaps = 92/430 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            +D E  S                   L      +    L D +    +  +L+    + 
Sbjct: 142 AVDTEQHSLRSFLGFTA----------LIQISTHEED-FLVDTIALHDVMSILRPVFSDP 190

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  V H +  +   L+   +  I +     T                 +A ++ S+   
Sbjct: 191 NICKVFHGADNDVIWLQR--DFHIYVVNMFDT----------------AKACEVLSKPQR 232

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVT--------VTREIFKRL 175
               L+   C          + +   +         Y + D          +T E+ +  
Sbjct: 233 SLAYLLETVC--GVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLA 290

Query: 176 EPLSSKEQELWYLD---QTINDRGYCV------DVALAHTLNQIVDVERTKL-------- 218
              SS +    +L    +  N     +      D   +   + I+               
Sbjct: 291 TDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISL 350

Query: 219 --DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-LTETTCQRVLSSNKK------- 268
             ++ +  L        R  ++   ++  +  +        TT + +  +          
Sbjct: 351 NAEELVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATES 410

Query: 269 ----------LTPQAIQVFNNRMRASRSAVLKLNTLVEAM-----NSDGRLRGT---LQF 310
                       P      ++  +     + KL+ L+  +      ++G    +      
Sbjct: 411 SPSLSSSVQSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSL 470

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
           L   +T   S          +    + +                     +    R  + A
Sbjct: 471 LVNFKTKLSSHSAP-----KQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCR--IYA 523

Query: 371 SEGKKLVVAD 380
           ++G+ L   D
Sbjct: 524 NDGRLLCYCD 533


>gi|227519479|ref|ZP_03949528.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104]
 gi|257084298|ref|ZP_05578659.1| exonuclease [Enterococcus faecalis Fly1]
 gi|257416905|ref|ZP_05593899.1| exonuclease [Enterococcus faecalis AR01/DG]
 gi|257421652|ref|ZP_05598642.1| exonuclease [Enterococcus faecalis X98]
 gi|307288644|ref|ZP_07568625.1| exonuclease [Enterococcus faecalis TX0109]
 gi|227073091|gb|EEI11054.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX0104]
 gi|256992328|gb|EEU79630.1| exonuclease [Enterococcus faecalis Fly1]
 gi|257158733|gb|EEU88693.1| exonuclease [Enterococcus faecalis ARO1/DG]
 gi|257163476|gb|EEU93436.1| exonuclease [Enterococcus faecalis X98]
 gi|306500398|gb|EFM69734.1| exonuclease [Enterococcus faecalis TX0109]
 gi|315155598|gb|EFT99614.1| exonuclease [Enterococcus faecalis TX0043]
 gi|315165305|gb|EFU09322.1| exonuclease [Enterococcus faecalis TX1302]
          Length = 188

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 31/144 (21%)

Query: 1   MATLFIDFETRS-------PIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-------- 45
           M     DFET S        I + K    +  ++   +             W        
Sbjct: 12  MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTL-----IKPETPFFWRNTQIHGI 66

Query: 46  ---DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
              D  + P  P+V ++       +  +VAHN+ F+ +VL      + L+ P +  +CT+
Sbjct: 67  HESDVANAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 126

Query: 98  VLARSN---GLPSALKAVGEALKL 118
             +R          L  V E L +
Sbjct: 127 KTSRKLFPEFPNHKLNTVCENLNI 150


>gi|163868507|ref|YP_001609716.1| hypothetical protein Btr_1359 [Bartonella tribocorum CIP 105476]
 gi|161018163|emb|CAK01721.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
          Length = 384

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 49/165 (29%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D  V L D +   +  Q   + + +  +  V H++  +   +       
Sbjct: 38  PQLCLIQLASPDVTV-LIDPIAPDIDLQPFFDLMIDKKIVKVFHSARQDIETI-YYLGGV 95

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           IP      T +     G   ++         +   +++        C+  +         
Sbjct: 96  IP-SPLFDTQIAGSICGFGDSISYDQIVQHCTGHHLDKSSRFTDWSCRPLS--------- 145

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                       Y   DVT  R+++  L+    K Q   ++D  +
Sbjct: 146 -------EKQLLYALADVTYLRDVYLLLKKRLEKNQRTHWMDDEV 183


>gi|225388910|ref|ZP_03758634.1| hypothetical protein CLOSTASPAR_02650 [Clostridium asparagiforme
           DSM 15981]
 gi|225045019|gb|EEG55265.1| hypothetical protein CLOSTASPAR_02650 [Clostridium asparagiforme
           DSM 15981]
          Length = 67

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
            F++   QVT  QR   K +   + Y   A        +  L+++    +   N   E +
Sbjct: 1   MFHIPLDQVTPLQRRNAKAVNFGIVYGISA-----FGLSEDLSISRKEAVEYINKYFETY 55

Query: 476 EDAENFCR 483
              + F  
Sbjct: 56  PGVKTFLD 63



 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 5/53 (9%), Positives = 12/53 (22%)

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
                 A NF      +    + +              + + +  V    + L
Sbjct: 13  QRRNAKAVNFGIVYGISAFGLSEDLSISRKEAVEYINKYFETYPGVKTFLDGL 65


>gi|311748418|ref|ZP_07722203.1| hypothetical protein ALPR1_19118 [Algoriphagus sp. PR1]
 gi|126576930|gb|EAZ81178.1| hypothetical protein ALPR1_19118 [Algoriphagus sp. PR1]
          Length = 249

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 64/237 (27%), Gaps = 51/237 (21%)

Query: 2   ATLFIDFETRSPID-------------LTKCGI------------------CKYAEDVCV 30
             LF+D ET S  D             + K  +                    +AE   V
Sbjct: 10  DILFLDIETASLSDKFENLPPRLQDEWIKKEKLIQTENGKIEPGALYFDRAGIHAEFGQV 69

Query: 31  ILFAFGFDDHP---------VELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL 80
           I    G+              +++    +  +       LE     + AHN   F+   L
Sbjct: 70  ICVGVGYFQWKKKDKKLIFRSKVFSNEDERELLLDFNTLLEKKKWILCAHNGKEFDFPYL 129

Query: 81  KACF---NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
                   + +P        +  +       L  +        +     + L A F    
Sbjct: 130 CRRMLVQGVTLPEPL----QIAGKKPWEVRHLDTLELWKFGDYKHYTRLELLAAVFGIPT 185

Query: 138 THEC--LYDRNKPNHREA-WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
           + +       N   H E       +YC+ DV VT  ++  + P   + +      + 
Sbjct: 186 SKDDLDGSQVNTTFHLEKNINRIKKYCRKDVEVTARVYLAMHPQLDEMELEMVHLED 242


>gi|221066578|ref|ZP_03542683.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
 gi|220711601|gb|EED66969.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
          Length = 243

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 41/153 (26%), Gaps = 42/153 (27%)

Query: 2   ATLFIDFETRSPIDLT--------------------------KCGICKYAEDVCVILFAF 35
             + +D ET     +                             G   + + + V     
Sbjct: 3   RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFNAGRDSHPDALRVHGIT- 61

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI----- 90
                   L D          + E L+     ++ HN+ F+   L     L         
Sbjct: 62  -----TEFLKDKPRFEEKIDEIWEYLQ--GAELIIHNAPFDLGFLNNELKLAKRPPLKQC 114

Query: 91  -HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
               I TLV+A+        +L ++ + L + +
Sbjct: 115 VGGVIDTLVMAKEMYPGKRNSLDSLCDRLGVDN 147


>gi|261753605|ref|ZP_05997314.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
 gi|261743358|gb|EEY31284.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
          Length = 233

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 24  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 82

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 83  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 139

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 140 DGARRLWRGDSTKLDHCLAKIGL 162


>gi|162453773|ref|YP_001616140.1| DNA polymerase II [Sorangium cellulosum 'So ce 56']
 gi|161164355|emb|CAN95660.1| DNA-directed DNA polymerase [Sorangium cellulosum 'So ce 56']
          Length = 778

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 27/198 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFG---FDDH-PVELWDCVHDPVMPQVL 57
             L +D ET   +D         A                   P  +     +  + +  
Sbjct: 152 RVLSLDIET--SLDGEHLYAIAVAGAGGERCLLVRDAPVPGGLPAFVERFPDERTLLERF 209

Query: 58  KEALE--NTDVTIVAHNSY-FERTVLKAC---FNLDIPIHRWIC-TLVL--------ARS 102
            E +   + DV     N   F+   L+       L   + R      +L        AR 
Sbjct: 210 LELVAQADPDVL-TGWNIPDFDLPALQRYCRRAGLLCALGRGDDEIGILRDPGFSREARV 268

Query: 103 NGLPSA-LKAVG----EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                  L  +       L+L   ++E     I    K    +   ++ + ++R+     
Sbjct: 269 VLPGRVVLDGLALLRGAFLRLDDYRLETAARTILGRGKLFGPDDRGEQIEASYRDDPARL 328

Query: 158 GEYCKGDVTVTREIFKRL 175
            EY   D  + R++ ++ 
Sbjct: 329 AEYNLEDARLVRDLLEKT 346


>gi|134081963|emb|CAK97229.1| unnamed protein product [Aspergillus niger]
          Length = 1108

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 88/341 (25%), Gaps = 65/341 (19%)

Query: 312 GASRTGRWSGCV--FPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVI 369
           G + +G+    +    PQ +P  + +   ++        +  +       +   +++ + 
Sbjct: 627 GLTSSGKTDHRLGFILPQIIPMGTITRRAVENTWLTASNAKGN------RVGSELKAMIK 680

Query: 370 ASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD-- 427
           A  G   V AD+   E   +A + G+                  +++        T    
Sbjct: 681 APPGYSFVGADVDSQEL-WIASLVGDAQFQIHGGNAIGFMTLEGSKAAGTDMHSRTAQIL 739

Query: 428 --QRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWM 485
              R   KV      Y  G K    +      +++            +E +      R +
Sbjct: 740 GISRNDAKVFNYGRIYGAGVKFAATLLRQFNPSMSERQTQEVATKLYKETKGTRTTRRIL 799

Query: 486 QENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRD 545
            E        + F+    E   +  R +   +                      A  RR 
Sbjct: 800 CEGPFWRGGTESFVFNKLEEFAEQERPRTPTL----------------GAGITEALMRRF 843

Query: 546 VPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAV 605
           +        + N  +       L           ++   R+                   
Sbjct: 844 INKGSFMTSRINWAIQSSGVDYLHL-----LIVAMDYLIRRFNIAA-------------- 884

Query: 606 SRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASM 646
                             + +TVHDEI     D D++ A++
Sbjct: 885 -----------------RLAITVHDEIRYLVKDEDKYRAAL 908


>gi|63054485|ref|NP_593004.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe 972h-]
 gi|6226742|sp|Q10146|RRP6_SCHPO RecName: Full=Exosome complex exonuclease rrp6; AltName:
           Full=Ribosomal RNA-processing protein 6
 gi|159883898|emb|CAA93168.2| exosome subunit Rrp6 (predicted) [Schizosaccharomyces pombe]
          Length = 777

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 45/180 (25%), Gaps = 34/180 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E             +      V L     +     + D +      + L    
Sbjct: 238 KEIAVDLE---------HHDYRSFRGF-VCLMQIS-NREKDWIVDTLELREELEALNVVF 286

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALKAVGEAL-KLS 119
            N ++  V H +  +   L+  F   + +     T    +  G     L  + +      
Sbjct: 287 TNPNIIKVFHGATMDIIWLQRDFG--LYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYD 344

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R  P      R   +Y + D      I+  L    
Sbjct: 345 ADKRYQMADW-------------RIRPLP------REMLKYAQSDTHYLLYIWDHLRNEL 385


>gi|110803621|ref|YP_698953.1| DNA polymerase III, epsilon subunit [Clostridium perfringens SM101]
 gi|110684122|gb|ABG87492.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens SM101]
          Length = 204

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 35/126 (27%)

Query: 1   MATLFIDFETR-----------------SPIDLTKCGICKY-------AEDVCVILFAFG 36
           M  LF D ET                  S       G   +        E   +  F+  
Sbjct: 1   MKLLFFDTETTGVKPGSICQLSYILVNTSTKPQKTIGKNIFFTVDEMEPEAERIHGFSLE 60

Query: 37  --FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIH 91
             ++      +    + +    + + LE   +  + HN  F+   LK            +
Sbjct: 61  KLYELSEGMYF----EDLYADFINDFLEADFI--IGHNVQFDIKFLKHELLGLGEFFEPN 114

Query: 92  RWICTL 97
              CT+
Sbjct: 115 NVFCTM 120


>gi|296454533|ref|YP_003661676.1| DNA polymerase III subunit epsilon [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183964|gb|ADH00846.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 235

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 28/139 (20%)

Query: 2   ATLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDD--------------HPVE 43
             + +D ET         +T+ G  +  E   V  F    +                   
Sbjct: 33  DYVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAM 92

Query: 44  LWDCVHDPVMPQVLKEALENTDV-----TIVAHNSYFERTVLKACFNLDIPIHRW----I 94
           + D      +       L           IV HN  F+   L       I    +     
Sbjct: 93  VADLDPIDKVLPRFIAWLATPAAGPTVEPIVGHNVSFDLRFLD-YNTRHIAGCGFACADY 151

Query: 95  CTLVLARSNGLPSALKAVG 113
            T+ ++R+         + 
Sbjct: 152 DTMQISRALFPAQRHHRLA 170


>gi|262276193|ref|ZP_06054002.1| ribonuclease D [Grimontia hollisae CIP 101886]
 gi|262220001|gb|EEY71317.1| ribonuclease D [Grimontia hollisae CIP 101886]
          Length = 405

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 37/141 (26%), Gaps = 19/141 (13%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           +D   + L D +    +   L   L +  V  V H    +  V              + T
Sbjct: 78  YDGETLSLIDPIELDDL-SPLWGLLTDESVVKVLHACSEDLEVFYHYAG--AMPTPMVDT 134

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +        +     +++G+       +  +                  
Sbjct: 135 QIMAAFLGHGLSTGFASLVEEYLVVTLDKGEARTDWCARPLS----------------EK 178

Query: 157 FGEYCKGDVTVTREIFKRLEP 177
             EY   DV     ++  L  
Sbjct: 179 QLEYAAADVYYLLPLYNELSK 199


>gi|146282599|ref|YP_001172752.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri A1501]
 gi|145570804|gb|ABP79910.1| DNA polymerase III, epsilon chain [Pseudomonas stutzeri A1501]
 gi|327480856|gb|AEA84166.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 4166]
          Length = 241

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 32/150 (21%)

Query: 1   MATLFIDFETRSPI------------------DLTKCGICKYAE-DVCVILFAFGFDDHP 41
           M ++ +D ET                       LT      Y + D  V   A       
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPDREVDEGAIAVHGIT 60

Query: 42  V-ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-------- 92
              L D      +     E +++  +  V HN+ F+   +   F L     R        
Sbjct: 61  NEFLVDKPRFRDIADEFFEFIKDAQL--VIHNAAFDLGFINNEFALLGQQDRAEITDHCT 118

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL++AR        +L A+ +   + +
Sbjct: 119 VLDTLLMARERHPGQRNSLDALCKRYGVDN 148


>gi|332312340|gb|EGJ25435.1| ATP-dependent helicase [Listeria monocytogenes str. Scott A]
          Length = 931

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 4   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 54

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 55  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 114

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 115 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPH 153


>gi|310765107|gb|ADP10057.1| DNA polymerase II [Erwinia sp. Ejp617]
          Length = 787

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 17/105 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGI-CKYAEDVCVILFAFGFDDHPVELWD-----CVHDPVMPQ 55
             + +D ET    +L   G+      DV ++      ++      D         P + +
Sbjct: 153 KWVSLDIETTRHGELYCIGLEGCGQRDVYMLG----PENGDASQIDFHLEYVDSRPQLLE 208

Query: 56  VLKEALE--NTDVTIVAHNS-YFERTVLKAC---FNLDIPIHRWI 94
            L       + DV  +  N   F+  VL+     + + + + R  
Sbjct: 209 KLNAWFARHDPDVL-IGWNLVQFDLRVLQKHADRYGIPLRLGRGH 252


>gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
 gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
          Length = 318

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 71/254 (27%), Gaps = 31/254 (12%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR-NKPNHREAWRL 156
                +     L+ +   L +         + I      +    + ++ N+  ++     
Sbjct: 130 KKYMKHAPNHKLETLKRILGIRLSSHNAFDDCITCAAVYQKCAAIEEKGNRKVNKAVLDE 189

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y    V       KR            YLD         V V         +     
Sbjct: 190 TAVYEA--VKEMLVCNKRNVEWLRCMNVGSYLDIKAFYPVMRVKVKGRKKYV--LTEILE 245

Query: 217 KLDQELESLTYGLV 230
              +E+ +      
Sbjct: 246 DGVKEICTSLKCEP 259


>gi|158425285|ref|YP_001526577.1| ribonuclease D [Azorhizobium caulinodans ORS 571]
 gi|158332174|dbj|BAF89659.1| ribonuclease D [Azorhizobium caulinodans ORS 571]
          Length = 383

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 68/267 (25%), Gaps = 39/267 (14%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
               + D + + +        + N  V  V H    +  ++      +I  H    T V 
Sbjct: 48  DEAIIIDALAEGLDLAPFFALMGNEKVKKVFHAGRQDIEIVWHLA--EIIPHPVFDTQVA 105

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           A   G   +                   +L+ R       +     +      +      
Sbjct: 106 AMVLGYGDS---------------ISYDQLVQRITGHAIDKSSRFTDWSRRPLSQAQLT- 149

Query: 160 YCKGDVTVTREIFKRLEPLSSKE----QELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
           Y   DVT  R+++K+L                ++   +   Y  D   A+   +   V +
Sbjct: 150 YAVADVTHLRDVYKKLMEDLESRGRADWMGEEMNILTSPSTYRQDPETAYERLKS-RVRK 208

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
            +    L  +       ++              L    + +     V+       PQ  +
Sbjct: 209 PRELAVLAEVAAWREREAQAR-----------DLPRGRIIKD---EVIGEIAVQQPQTAE 254

Query: 276 VFNNRMRASR--SAVLKLNTLVEAMNS 300
                    +          ++EA+  
Sbjct: 255 KLAELRSLPKGFERSRYGEAVLEAVKK 281


>gi|47096482|ref|ZP_00234074.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254899404|ref|ZP_05259328.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes J0161]
 gi|254912457|ref|ZP_05262469.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
 gi|254936784|ref|ZP_05268481.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
 gi|284802344|ref|YP_003414209.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5578]
 gi|284995486|ref|YP_003417254.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5923]
 gi|47015135|gb|EAL06076.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609379|gb|EEW21987.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
 gi|284057906|gb|ADB68847.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5578]
 gi|284060953|gb|ADB71892.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes 08-5923]
 gi|293590439|gb|EFF98773.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
          Length = 928

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPH 150


>gi|265989936|ref|ZP_06102493.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
 gi|263000605|gb|EEZ13295.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
          Length = 233

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 24  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 82

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 83  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 139

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 140 DGARRLWRGDSTKLDHCLAKIGL 162


>gi|238060312|ref|ZP_04605021.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
 gi|237882123|gb|EEP70951.1| hypothetical protein MCAG_01278 [Micromonospora sp. ATCC 39149]
          Length = 604

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 28/140 (20%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH--------------PVELW 45
           + +D ET         +T+ G  K      + + A   +                   L 
Sbjct: 53  VVVDLETTGGAPDGGGITEIGAVKVRGGEELGVLATLVNPGVPIPPFITVLTGITQAMLV 112

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA-R 101
                  +     E + +    +VAHN+ ++   LKA         P  R + T  LA R
Sbjct: 113 PAPPIEQVLPSFLEFVADA--VLVAHNAPYDVGFLKAACARHGYRWPNPRVLDTAALARR 170

Query: 102 SNG----LPSALKAVGEALK 117
             G        L  +    +
Sbjct: 171 VLGRDEVPNRKLGTLASYFR 190


>gi|83720697|ref|YP_443303.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           E264]
 gi|257139540|ref|ZP_05587802.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           E264]
 gi|83654522|gb|ABC38585.1| DNA polymerase III, epsilon subunit [Burkholderia thailandensis
           E264]
          Length = 241

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 36/190 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTG---LNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-----IH 91
               E   D      +   L++ + + ++ I  HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLRDKPKFADIVDQLRDFVRDAELII--HNAPFDLGFLDAEFALLGLPAFSDHCA 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TLV A+        +L A+ +   +S+        L+      E +  +    +  
Sbjct: 116 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESL 175

Query: 150 HREAWRLFGE 159
             +     G+
Sbjct: 176 VIDMLDEAGD 185


>gi|317182753|dbj|BAJ60537.1| DNA polymerase III subunit epsilon [Helicobacter pylori F57]
          Length = 287

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     L    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 75  FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNA 134

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 135 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 193 LSIRYSLSFLKELLGFG 209


>gi|317010079|gb|ADU80659.1| DNA polymerase III subunit epsilon [Helicobacter pylori India7]
          Length = 287

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 43/145 (29%), Gaps = 40/145 (27%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVE-------------------- 43
           FID ET     L             ++   A       +                     
Sbjct: 75  FIDLETTGSCPLKH----------EILEIGAVQVKGGEIINRFETLVKVKSVPDYISDLT 124

Query: 44  ---LWDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICT 96
                D ++ P + + L++  L   +   VAHN+ F+   L   F   +        +CT
Sbjct: 125 GIAYEDTLNAPSVHEALQKLRLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCT 184

Query: 97  LVLA--RSNGLPSALKAVGEALKLS 119
           L L+      +  +L  + E L   
Sbjct: 185 LDLSKRAILSMRYSLSFLKELLGFG 209


>gi|262342115|gb|ACY54568.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 8/138 (5%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A+ G+ +V ADL+GIE R+L+                            +     
Sbjct: 13  RRLFMATPGQVMVGADLSGIELRMLSHYLARYDTYFGDNLLNGDVHQLNTDKIGI----- 67

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G +           +    A   +   A  E     +    
Sbjct: 68  ---TRKLVKTVTYAFLYGAGNEKIGYSYDRLLSSQKAKAKGREIKEAFIEAIPGLSDLLS 124

Query: 485 MQENHPEHAIEDLFIGTA 502
             ++           G  
Sbjct: 125 AVKSAANRGFVKGIDGRK 142


>gi|262212231|gb|ACY35732.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRCADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|261323134|ref|ZP_05962331.1| DNA polymerase III [Brucella neotomae 5K33]
 gi|261299114|gb|EEY02611.1| DNA polymerase III [Brucella neotomae 5K33]
          Length = 233

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 24  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 82

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+    + CT+
Sbjct: 83  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPFYCTM 139

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 140 DGARRLWRGDSTKLDHCLAKIGL 162


>gi|260768989|ref|ZP_05877923.1| ribonuclease D [Vibrio furnissii CIP 102972]
 gi|260617019|gb|EEX42204.1| ribonuclease D [Vibrio furnissii CIP 102972]
          Length = 397

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 25/173 (14%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           FD   + L D    D + P    E L++T V  V H    +  V K  F         + 
Sbjct: 73  FDGENLSLIDPLAMDEMTP--FVELLQDTSVLKVLHACGEDIEVFKTSFG--CVPFPMVD 128

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           T ++A   G   +      A  L + ++++ +       +  +                +
Sbjct: 129 TQIMAAFLGYGLSTGFAALAHDLLNVELDKSESRTDWLARPLS----------------Q 172

Query: 156 LFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
              EY   DV        ++ +++      E      +  +  R    D  + 
Sbjct: 173 KQLEYAAADVFYLMPMYEQLLEKVTQAGWWEAAQQESELQVEKRTRTTDPEMV 225


>gi|118089996|ref|XP_001235033.1| PREDICTED: Werner syndrome [Gallus gallus]
          Length = 1466

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 65/221 (29%), Gaps = 33/221 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+         +   + L      +    L+        P+ LK  LE+  +  V     
Sbjct: 58  DIEWPPSYTKGKMAKIALIQLCVTEEKCYLFHISSMSGFPKGLKRLLEDETIKKV----- 112

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
                      + I    W    ++         LK+  E   ++++K++  +       
Sbjct: 113 ----------GVGIEGDHW---KLMG---DFEVKLKSFVELADVANEKLKCKEVWSLNGL 156

Query: 135 KGETHECLYDRNKPNHREAWRLF------GEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
                     ++K      W  F        Y   D      I+++L+ ++S +++L+  
Sbjct: 157 VKHLFGKQLLKDKSIRCGNWEKFPLDEEQKLYAATDAYAGFIIYQKLKTMNSIDRKLF-- 214

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
                +R   V           +    + L  ++   +  L
Sbjct: 215 ----GERRDEVLSDDVKERLTSLAEGMSYLAAKISDSSGQL 251


>gi|187479401|ref|YP_787426.1| DNA polymerase III subunit epsilon [Bordetella avium 197N]
 gi|115423988|emb|CAJ50541.1| DNA polymerase III, epsilon chain [Bordetella avium 197N]
          Length = 243

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 51/202 (25%), Gaps = 43/202 (21%)

Query: 1   MATLFIDFETRSPID-----LTKCG-------------ICKYAE-----DVCVILFAFGF 37
           M  +  D ET          + + G             +  Y       D      A   
Sbjct: 1   MRQIIFDTETTGLDPAQGHRIVEIGCVELVNRMVTGRNLHLYLNPDRDSDPE----ALAV 56

Query: 38  DD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIP--I 90
                  L D      + +   + +E     ++AHN+ F+       L+      +    
Sbjct: 57  HGLTTAFLSDKPRFGDIAEAFIQFIE--GAELIAHNASFDVKFFNAELQKVGRKTLDNYC 114

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNK 147
                +L  AR+       +L A+ +   +S+  +   G  L ++            ++ 
Sbjct: 115 ASVTDSLAHARTLFPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDA 174

Query: 148 PNHREAWRLF----GEYCKGDV 165
                               D 
Sbjct: 175 LLIDVDDNQAGGNRIALAAFDA 196


>gi|315123522|ref|YP_004065528.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
           SM9913]
 gi|315017282|gb|ADT70619.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas sp.
           SM9913]
          Length = 376

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 69/274 (25%), Gaps = 34/274 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E      + +  +        V L    +D   + L D + +  +     + L+
Sbjct: 24  ILAIDTE-----FMRRRTLY-----PEVALIQV-YDGEHLALIDPLAELSLFD-FWQILK 71

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  V H+   +  V +         +    T    +  G  + +             
Sbjct: 72  DPKVLKVLHSPSEDIEVFQKYAGFV--PYPLFDTQFALQLLGEGNCM------------- 116

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
              G  L+ +       +    R     R   +   EY   D       F+ +       
Sbjct: 117 ---GFALMVKTLLNIEIDKSESRTNWLQRPLTQKQLEYAAADTYHLLPCFELIIDSIKAA 173

Query: 183 QELWYLDQTIND----RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
                +          R + +   L +   +     +      L+ L     + +     
Sbjct: 174 DLFDIVINESELVANKRAFQIPDELLYKEIKNAWQLKPHELAVLKELAVWRRNKAIRKNL 233

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
              ++  E  +        +    L     + P 
Sbjct: 234 ALNFVLKEHNMTEIAKRGPSSLNALRQIPGVEPI 267


>gi|313203394|ref|YP_004042051.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312442710|gb|ADQ79066.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 182

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 24/150 (16%)

Query: 1   MATLFIDFETR-----SPIDLTKC--GICKYAEDVCVILFAFGF---DDHPVELWDCVHD 50
           M    IDFET        I LTK   GI   ++   +    F +    +  V        
Sbjct: 1   MNFTAIDFETAHAEFPCEIGLTKVENGIITKSQSWLIKPACFPYMNPWNQRVHGISSADV 60

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
                   +   LK  +EN    +VAHN+ F+  VL+   A ++L +P   + C++ ++R
Sbjct: 61  SSASTFEELWGELKLWIEND--YLVAHNAAFDMRVLRSVLAYYDLAVPRTEYFCSVSISR 118

Query: 102 ---SNGLPSALKAVGEALKLSSQKMEEGKE 128
               +    +L  V +   +S      G +
Sbjct: 119 KTWKHLPSHSLGVVSQFHNISFNHHRAGDD 148


>gi|260881524|ref|ZP_05404631.2| exonuclease [Mitsuokella multacida DSM 20544]
 gi|260848674|gb|EEX68681.1| exonuclease [Mitsuokella multacida DSM 20544]
          Length = 196

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 23/140 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA------EDVCVILFA-----FGFDDHPVELW---D 46
           M    IDFET +    + C +           D    L       + + +  +      D
Sbjct: 2   MNFTAIDFETATGARDSACSVAVVTIRAGALVDSYYTLIQPPANRYSYFNTKIHGLTEAD 61

Query: 47  CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLAR 101
             +       +   LE       +VAHN+ F+ +VL++C   + L  P   +  T+ +AR
Sbjct: 62  TANAADF-AGIWPELEAKLEGQLVVAHNAKFDMSVLRSCLARYGLQAPAFSYCDTVAIAR 120

Query: 102 SNGL---PSALKAVGEALKL 118
                     L  VG  L L
Sbjct: 121 RAWPNLANHKLGTVGAYLNL 140


>gi|119718032|ref|YP_924997.1| exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
 gi|119538693|gb|ABL83310.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
           JS614]
          Length = 405

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 58/218 (26%), Gaps = 33/218 (15%)

Query: 6   IDFETRSPID-----LTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHDPVMP- 54
           ID ET          + + G+ + ++   +      L     D  P  +       V+  
Sbjct: 7   IDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQRDVGPTHIHGITARDVLDA 66

Query: 55  ---QVLKEALENT--DVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVL--ARSN 103
              Q +   L  +    T+VAHN+ F+   L    +       P    +CT+ L  +   
Sbjct: 67  PTFQEVAPYLIGSLAGRTLVAHNARFDTQFLDYEFERASVGTRPPTPSLCTMQLSSSYLR 126

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
           G    LK    A  +     +E   L                   +    W         
Sbjct: 127 GASRKLKDCCVAANVPH--ADEHTALGDARAVAGLLNYYLVNT--DRPVPWSAVL----- 177

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
               TR  +      +           T  +    +D 
Sbjct: 178 --ESTRRHWWPAPGPTPGRPRSVLRSATPREPAAWLDR 213


>gi|288959282|ref|YP_003449623.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
 gi|288911590|dbj|BAI73079.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
          Length = 209

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 25/148 (16%)

Query: 4   LFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LF--------AF--GFDDHPVELWDC 47
           + IDFET +    + C I   + ED  V      L         +F         E  D 
Sbjct: 9   VAIDFETANETRTSACSIGVAWIEDGRVTATEEHLIRPREPRFNSFNSAIHGIRAE--DV 66

Query: 48  VHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICT-LVL--A 100
              P  P+V     E      I+AHN+ F+ +VL+     + LD P   ++CT ++   A
Sbjct: 67  ADAPEFPEVWATLRERVRGRLILAHNAAFDISVLRHTLTDYGLDWPACDYLCTVMLARRA 126

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKE 128
                   L  + + L ++      G +
Sbjct: 127 WPALTGHRLNHLADFLGIALDHHHAGSD 154


>gi|262212061|gb|ACY35647.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212137|gb|ACY35685.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212159|gb|ACY35696.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKRGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E    +   G  
Sbjct: 121 DKLLAAIKTASERGFIEAIDGRK 143


>gi|254581264|ref|XP_002496617.1| ZYRO0D04246p [Zygosaccharomyces rouxii]
 gi|238939509|emb|CAR27684.1| ZYRO0D04246p [Zygosaccharomyces rouxii]
          Length = 1239

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 72/295 (24%), Gaps = 69/295 (23%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG-EQWKLKAFETGEDLYV--TTYARS 416
           I   +++ V A +G   V AD+   E  + + ++            G             
Sbjct: 698 IGSELKTQVKAPKGYSFVGADVDSEELWIASLVSDSVFNIHGGTAIGWMCLEGTKNEGTD 757

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
            +   AQ+    R   K+      Y  G K   ++      +L                 
Sbjct: 758 LHTKTAQILGCNRNEAKIFNYGRIYGAGVKFATQLLKKFNPSLPDEEAQ----------- 806

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                             E+        ++            + W              +
Sbjct: 807 -----------GIANQLYENTKGKIQRSKIF----------KKFWFG----------GSE 835

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
           +I+  K   +      +       +  S                        R  T+   
Sbjct: 836 SILFNKLESIAEQDEPRTPVLGCGITFSLMKRNL------------------RTNTFLPS 877

Query: 597 LTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                +Q+   D   +L   M   +        + +++HDEI     D D++ AS
Sbjct: 878 RINWTIQSSGVDYLHLLCCSMNYLIATYHIKARLCISIHDEIRFLVADEDKYRAS 932


>gi|212533271|ref|XP_002146792.1| DNA polymerase gamma [Penicillium marneffei ATCC 18224]
 gi|210072156|gb|EEA26245.1| DNA polymerase gamma [Penicillium marneffei ATCC 18224]
          Length = 1122

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 77/325 (23%), Gaps = 75/325 (23%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ + A  G   V AD+   E
Sbjct: 663 PQIIPMGTITRRAVENTWLTASNAKGN------RVGSELKAMIKAPPGYVFVGADVDSQE 716

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                  +++        T       R   KV      Y
Sbjct: 717 L-WIASLVGDAQFQLHGGNAIGFMTLEGSKAAGTDLHSRTASILGISRNDAKVFNYGRIY 775

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +       L         +   +E +      + + +        + F+  
Sbjct: 776 GAGLKFASTLLRQFNPTLTEKETSQIASKLYKETKGTRTTRKILNDGPFWRGGTESFVFN 835

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +   +                      A  RR +        +      
Sbjct: 836 KLEEFAEQERPRTPAL----------------GAGITEALMRRFINKGSFMTSR------ 873

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 874 ------------------------------------INWAIQSSGVDYLHLLITAMDFLI 897

Query: 616 NATKAGYDIVLTVHDEIVCETPDTD 640
                   + +TVHDEI     + D
Sbjct: 898 RRFNIDARLAITVHDEIRYLVKEED 922


>gi|169342705|ref|ZP_02863746.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169299211|gb|EDS81281.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 204

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 27/122 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV-----CVIL--FAFGFDD-----HPVELWDCV 48
           M  LF D ET      + C +     D        I     F  D+       +  +   
Sbjct: 1   MKLLFFDTETTGVKPGSICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFSLE 60

Query: 49  ---------HDPVMPQVLK-EALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWIC 95
                    H   +      + LE   +  + HN  F+   LK            +   C
Sbjct: 61  KLYELSEGMHFEDLYADFINDFLEADFI--IGHNVQFDIKFLKHELLGLGEFFEPNNVFC 118

Query: 96  TL 97
           T+
Sbjct: 119 TM 120


>gi|167582322|ref|ZP_02375196.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
           TXDOH]
 gi|167620419|ref|ZP_02389050.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis Bt4]
          Length = 241

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 36/190 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTG---LNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-----IH 91
               E   D      +   L++ + + ++ I  HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLRDKPKFADIVDQLRDFVRDAELII--HNAPFDLGFLDAEFALLGLPAFSDHCA 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TLV A+        +L A+ +   +S+        L+      E +  +    +  
Sbjct: 116 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESL 175

Query: 150 HREAWRLFGE 159
             +     G+
Sbjct: 176 VIDMLDEAGD 185


>gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72]
 gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72]
          Length = 734

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 41/148 (27%)

Query: 8   FE-TRSPIDLTKCGICKYAEDVCVILF-AFGFDDHP------------------------ 41
            E T +  D    G+     D  +I   A    +                          
Sbjct: 540 TELTYTVFDTETTGLNPSQGD-EIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARV 598

Query: 42  -VELWDCVHDPVMPQVLKE---ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI--- 94
                D +    + + +     A     V  VAHN+ F+   L+     D+   R+    
Sbjct: 599 HGITADMLAGQPVIEAVLPSFHAFAADTVL-VAHNAAFDMRFLQ--LKEDLTGLRFDQPV 655

Query: 95  -CTLVLARSNGL---PSALKAVGEALKL 118
             TL+L+           L+A+ E L +
Sbjct: 656 LDTLLLSAVIHPNQDSHRLEAIAERLGI 683


>gi|254827216|ref|ZP_05231903.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
 gi|258599599|gb|EEW12924.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
          Length = 928

 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPH 150


>gi|269977281|ref|ZP_06184254.1| ribonuclease D [Mobiluncus mulieris 28-1]
 gi|307701108|ref|ZP_07638133.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
 gi|269934584|gb|EEZ91145.1| ribonuclease D [Mobiluncus mulieris 28-1]
 gi|307614103|gb|EFN93347.1| putative ribonuclease D [Mobiluncus mulieris FB024-16]
          Length = 422

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 59/193 (30%), Gaps = 37/193 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E        + G  +Y +   ++      +D    L D    P + + L  A+  
Sbjct: 58  VALDTE--------RAGAFRYFQGAYLV--QLRREDTGTFLIDPTAFPDL-EPLGAAI-- 104

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLSSQ 121
                + H++  +   L     + +       T + A+        L ++ E  L +  +
Sbjct: 105 GKAEWILHDATTDMPWLAE---IGMRPKLLFDTELAAKLLNFERFGLGSLTEQVLGIMLE 161

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K     +                R  P      + + EY   DV    ++ + L     +
Sbjct: 162 KEHSAADW-------------STRPLP------QSWLEYAALDVEFLVDLRQALWLQLGE 202

Query: 182 EQELWYLDQTIND 194
             +  + +Q    
Sbjct: 203 AGKDDWAEQEFEH 215


>gi|326388937|ref|ZP_08210519.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206537|gb|EGD57372.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370]
          Length = 445

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 51/167 (30%), Gaps = 20/167 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL-ENTDVTIVAHNSYFERTVLKACFNL 86
             + L     DD      D +   +    L + L +N DV  V H    +  ++      
Sbjct: 40  PELCLVQIA-DDKEAAAIDPMAPGIDLSPLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGR 98

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
               H    T +          + AV ++ ++    + E   L     KG        R 
Sbjct: 99  T--PHPIFDTQIA---------MMAVSQSEQIGYSNLVE-SWLGFSIDKGARFTDWSRRP 146

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
                       EY  GDVT   +IF R+     K     +LD  + 
Sbjct: 147 LT------ERQIEYAIGDVTHLSKIFPRILKRLIKTGRGEWLDIEME 187


>gi|325120384|emb|CBZ55938.1| Ribonuclease D, related [Neospora caninum Liverpool]
          Length = 1387

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 16/137 (11%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E              Y       L      +    L D         VL     N
Sbjct: 482 VAIDLE--------HHSFHSYR--GFTCLLQLSTREKD-YLIDPFPLFEHLHVLNAITAN 530

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--AL-KAVGEALKLSS 120
             +  + H +  +   L+   +  + +     T V AR+  +P   +L   +     + +
Sbjct: 531 PKILKIFHGADSDIIWLQR--DFSVYVVNMFDTCVAARALAVPGGASLANLLHTYCGVEA 588

Query: 121 QKMEEGKELIARFCKGE 137
            K  +  +   R    E
Sbjct: 589 NKQYQLADWRRRPLTPE 605


>gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
 gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
          Length = 1445

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 11/119 (9%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL 105
            +  + ++ +E   +    +VAHN+ F+   L      + +    +  I TL LAR    
Sbjct: 489 SEEEVLRLFREF--SEGAVLVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLELARYLYP 546

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                   +   L     + G  L          E          +EA      +   D
Sbjct: 547 EF------KRFGLGVLSKKFGVSLEQHHRAIYDAEATGHLAWIFVKEAMEHHKMFLHED 599


>gi|313618186|gb|EFR90268.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL S4-378]
          Length = 931

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 4   MKKKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYSTFLNPEKPI 54

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 55  PAFIQELTGISPKDVKNAPLFEDVAPIIASLLEDTIFVAHNVSFDWTFLEREMTRAGISL 114

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 115 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDKPH 153


>gi|16801079|ref|NP_471347.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria innocua Clip11262]
 gi|16414514|emb|CAC97243.1| dinG [Listeria innocua Clip11262]
          Length = 928

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKKKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYSTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIASLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDKPH 150


>gi|15827504|ref|NP_301767.1| hypothetical protein ML1040 [Mycobacterium leprae TN]
 gi|221229981|ref|YP_002503397.1| hypothetical protein MLBr_01040 [Mycobacterium leprae Br4923]
 gi|699161|gb|AAA62926.1| u1764u [Mycobacterium leprae]
 gi|13093054|emb|CAC31421.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933088|emb|CAR71135.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 429

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 32/192 (16%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE-N 63
            +D E        +    +Y+    +I      +   V +    H       L+   E  
Sbjct: 51  AVDTE--------RASGFRYSNRAYLIQIRRA-NAGTVLIDPVSHGNDPLTALRPVAEVI 101

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
           +    + H++  +   L     + +       T +  R  G     L  + + L      
Sbjct: 102 SKDEWILHSADQDLPCLAE---VGMRPPALYDTELAGRLAGFDRVNLATMVQRL------ 152

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
              G EL              D +K      W     Y   DV +  E+   +  + +++
Sbjct: 153 --LGFEL-------AKGHGAADWSKRPLPSDW---LNYAALDVELLIELRTAISKVLAEQ 200

Query: 183 QELWYLDQTIND 194
            +  +  Q  N 
Sbjct: 201 DKTDWATQEFNY 212


>gi|330719279|ref|ZP_08313879.1| DNA polymerase III, epsilon subunit [Leuconostoc fallax KCTC 3537]
          Length = 177

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 23/141 (16%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVIL-----FA---FGFDD-HPVEL 44
           M  + +DFET      S + +    +   K  ++   ++     F+            ++
Sbjct: 1   MNFIAMDFETANHERHSAVSIALAIVRDDKIVDEFYSLIRPETYFSRRNVAIHGIEEHDV 60

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
            D      +  V++      D  +VAHN+ F+  VLK     + L+ P +  + T+  +R
Sbjct: 61  LDAPKFSELWPVIQPLFT-EDKLVVAHNAPFDNGVLKGTLNYYGLEEPHYMLLDTVRTSR 119

Query: 102 SNGLP---SALKAVGEALKLS 119
                     L  V E L +S
Sbjct: 120 QFFPSFNNHKLNTVAENLGIS 140


>gi|313623167|gb|EFR93428.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           innocua FSL J1-023]
          Length = 928

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKKKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYSTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIASLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDKPH 150


>gi|116873334|ref|YP_850115.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742212|emb|CAK21336.1| ATP-dependent helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 928

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYSTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGIAPKDVKNAPLFEDVAPIIASLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFGLGHDKPH 150


>gi|47094224|ref|ZP_00231936.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
 gi|47017396|gb|EAL08217.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
          Length = 618

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPH 150


>gi|167464945|ref|ZP_02330034.1| DNA polymerase I-like protein- 3'-5' exonuclease and polymerase
           domains [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384415|ref|ZP_08058101.1| hypothetical protein PL1_0947 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150773|gb|EFX44233.1| hypothetical protein PL1_0947 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 358

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 62/239 (25%), Gaps = 29/239 (12%)

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
           + ++  V       +I    W  TL                E   L     + GK     
Sbjct: 4   ARYDLHV-AQNDGYEIRGCVW-DTLDAMHLLNEHE------EKYGLKILVEKYGK----Y 51

Query: 133 FCKGETHECLYD--RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----------- 179
           F          D   N      +  L G Y   DV  + ++ +    +            
Sbjct: 52  FGIPGPIYTFEDLFGNGSPAPFSVELVGIYAIKDVLYSWKLCEWQMEMMRKSPGRLLECY 111

Query: 180 -SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238
              + +L  +D  +   G+ +D+     L    +    +  +++               K
Sbjct: 112 AEIDSKLPEVDVFMARCGFEIDLDGLKALEAEFEPALEQAKRDVIETYGINDEFI---CK 168

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
           +   L  +      +  +   +R   S KK      +  +      +        L++ 
Sbjct: 169 MDRTLSAKKIAKWTEAQKARIKRWEDSVKKQQRIIEECESVGKTGLKKYRDAKERLLKL 227



 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 51/203 (25%), Gaps = 34/203 (16%)

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV--ALAHTLNQI 210
            +    E  K DV  T  I         +      + +    +   +           +I
Sbjct: 143 EFEPALEQAKRDVIETYGINDEFICKMDRTLSAKKIAKWTEAQKARIKRWEDSVKKQQRI 202

Query: 211 VDV----------ERTKLDQELESLTYGL--------------VSSSRCLEKLKTWLFLE 246
           ++           +     + L  L                    S      L   ++  
Sbjct: 203 IEECESVGKTGLKKYRDAKERLLKLYAEKPAPAVEEHAPRYVTEFSITNGNHLAYLIYDH 262

Query: 247 TGLH--LED----LTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
            G+             +T   V+    +       +    +   +     +  +  A+ +
Sbjct: 263 LGIEDVTPKFKRGKERSTASEVMEEYYETETALKPLATVAVY-EKLLNTYIRKIPHALEA 321

Query: 301 DGRLRGTLQFLGASRTGRWSGCV 323
           DGRL    +  G + TGR+S   
Sbjct: 322 DGRLHSEFK-AGGTATGRYSSSG 343


>gi|254361720|ref|ZP_04977856.1| ribonuclease D [Mannheimia haemolytica PHL213]
 gi|261492043|ref|ZP_05988618.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495020|ref|ZP_05991488.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153093246|gb|EDN74252.1| ribonuclease D [Mannheimia haemolytica PHL213]
 gi|261309336|gb|EEY10571.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312326|gb|EEY13454.1| ribonuclease D [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 372

 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 80/317 (25%), Gaps = 44/317 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E      +               L    FD   V L D  +           L
Sbjct: 27  KVVALDTE-----FIRTRTYYPILG-----LIQL-FDGQQVSLID-PNTISDFSPFVSLL 74

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEALKL 118
            + ++  V H    +  V +  F         + T V+A   G+  ++   K V   L +
Sbjct: 75  ADKNIIKVLHACSEDLEVFEYQF--KQLPEPMLDTQVMAAFAGIGISMGFAKLVSHYLNI 132

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K     + +AR                          +Y   DV     ++++L   
Sbjct: 133 ELDKGASRTDWLARPLS-------------------AEQLQYAAADVWYLLPVYEKLAQA 173

Query: 179 SSKEQELW----YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            +K              +      ++   A+           +    L+ L    +  ++
Sbjct: 174 LTKSTWQSAVAEECVALLKKAKQPINKEKAYKNIANAWRLNREELAILQVLAKWRIEEAQ 233

Query: 235 CLEKLKTWLFLETGLHLEDLT-ETTCQRVLS-SNKKLTPQAIQVFNNRMRASRS--AVLK 290
                  ++  E  L     +       +L   +        +     +   ++  +   
Sbjct: 234 KRNLALNFVVKEASLVQIAKSCPKHTSSLLEFMHPNEVRIHGKKILWLVEQGKAIESNDY 293

Query: 291 LNTLVEAMNSDGRLRGT 307
              +   ++  G     
Sbjct: 294 PELIQRLVDEKGYKYYM 310


>gi|299066469|emb|CBJ37657.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CMR15]
          Length = 242

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 53/195 (27%), Gaps = 30/195 (15%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y   +  +   A       
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYFNPERQIDAGAMAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI---PIHRWI 94
            E   D      +   +++ ++  +  I  HN+ F+   L        L      +   I
Sbjct: 61  NEFVADKPKFAEVVDEIRDYVQGAEAII--HNAAFDLGFLDMEFKRLGLPSFREHLDGHI 118

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL+ AR        +L A+ + L +S+        L+      E +  +         +
Sbjct: 119 DTLLDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVID 178

Query: 153 AWRLFGEYCKGDVTV 167
                         +
Sbjct: 179 MLESGETAAAEAAVI 193


>gi|298705697|emb|CBJ28935.1| similar to Werner syndrome protein [Ectocarpus siliculosus]
 gi|299115153|emb|CBN75519.1| similar to Werner syndrome protein [Ectocarpus siliculosus]
          Length = 727

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 14/93 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------VMPQ 55
             L +D E      L        +             D     +              P+
Sbjct: 113 NVLGLDCE--WEPSLAGTTPNPVST------VQLSLPDGTAYCFQLQRGNKKTTSSNFPK 164

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            L+  LEN  +  V  N   + T L+  + +++
Sbjct: 165 ALQNLLENPSIAKVGVNINSDATYLERDYGIEV 197


>gi|326317571|ref|YP_004235243.1| DNA polymerase III subunit epsilon [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374407|gb|ADX46676.1| DNA polymerase III, epsilon subunit [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 47/161 (29%), Gaps = 36/161 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFDD 39
             + +D ET     L+  G  +  E  CV L                       A     
Sbjct: 3   RQIVLDTETTG---LSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPERDSHEDALKVHG 59

Query: 40  HPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI------HR 92
              E   D      +   + E L+  ++ I  HN+ F+   L     L            
Sbjct: 60  ISNEFLKDKPKFAEVVDEILEYLQGAEIII--HNAAFDVGFLNKELELTGRPAFTSYVES 117

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              TLV+A+        +L A+ + L + +        L+ 
Sbjct: 118 VTDTLVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLD 158


>gi|262212069|gb|ACY35651.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHF-------PARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRELVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAEKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|255524855|ref|ZP_05391804.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|255511425|gb|EET87716.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
          Length = 306

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 25/142 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI---------------LFAFGFDD-HPVE 43
           M    IDFET +    + C I     ++  V+                   G     P  
Sbjct: 1   MNFTAIDFETANERRNSPCSIGIAVVKNGHVVEKIHHLIRPKEMRFMPINIGIHGIRPAV 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           + +      + + +K         ++AHN+ F+ +VL+     +++D+P  ++ICT+ L+
Sbjct: 61  VENEPEFDKVWEKIKHYF--DGNLVIAHNASFDISVLRKTAELYDIDLPKFKYICTMKLS 118

Query: 101 ---RSNGLPSALKAVGEALKLS 119
                    + L  V + L   
Sbjct: 119 KNFYRGIENAKLNTVNDFLGYE 140


>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
 gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
          Length = 1433

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 45/142 (31%), Gaps = 32/142 (22%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LW------- 45
           ET    D+   G+     D  + L A       +                 +        
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITD 474

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           D + D      + +  E+   D T+VAHN+ F+   L        LD P +  I TL LA
Sbjct: 475 DMLTDAPEVGEVFKKFESWMGDHTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELA 534

Query: 101 RSNGL---PSALKAVGEALKLS 119
           R          L  + + L + 
Sbjct: 535 RFLFPEMKNHRLNTMCKKLDIE 556


>gi|209550157|ref|YP_002282074.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209535913|gb|ACI55848.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 196

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 25/141 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI---------------LFAFGFDD-HPVE 43
           M T+ IDFET +    + C +   + E+  V                          P  
Sbjct: 1   MKTIAIDFETANEQRGSACSVGLAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIRPEH 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLA 100
           + D    P +     E +  +  T++AHN+ F+ +V +A  +L     P   ++C+L +A
Sbjct: 61  VEDAPEFPEVMDEFHEDI--SGATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMA 118

Query: 101 RSNGLP---SALKAVGEALKL 118
           +          L  + E L L
Sbjct: 119 QRIWPHFLSHRLNLIAEHLGL 139


>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
 gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
           29083]
          Length = 327

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 20/136 (14%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHDPVMPQVL 57
           +D ET        +    + +      V      L     D  PV +     D +    L
Sbjct: 26  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDALEGAPL 85

Query: 58  KEALENT------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + +          +VAHN+ F+  ++   +       P+ + +CT+VL++  GLP  
Sbjct: 86  FQDIADEFSSRLDGRVLVAHNAVFDWQMIAREYARAGRVAPVSQRLCTIVLSKELGLPLP 145

Query: 107 -SALKAVGEALKLSSQ 121
              L+++     +  Q
Sbjct: 146 NHKLESLAAHFGVVQQ 161


>gi|134098409|ref|YP_001104070.1| putative ribonuclease D (partial match) [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003374|ref|ZP_06561347.1| ribonuclease D [Saccharopolyspora erythraea NRRL 2338]
 gi|133911032|emb|CAM01145.1| putative ribonuclease D (partial match) [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 419

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 34/180 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E        +    +Y++   ++      +     L D +      + L  AL++
Sbjct: 52  VAVDTE--------RASGYRYSQRAYLV--QLRREGAGTVLVDPIALAGSLEPLATALDD 101

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
           T+   V H +  +   L     LD+   R   T +  R  G    +L A+ E   +   +
Sbjct: 102 TE--WVLHAASQDLPCLAE---LDLRPARLFDTELAGRLAGFDRVSLGALVER--MLGYR 154

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           +E+G        +                     +  Y   DV +   + + +     ++
Sbjct: 155 LEKGHSAADWSRRPLP----------------ADWLAYAALDVELLVALREAMHAELERQ 198


>gi|56479129|ref|YP_160718.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
           EbN1]
 gi|56315172|emb|CAI09817.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
           EbN1]
          Length = 239

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 36/162 (22%)

Query: 1   MATLFIDFETRSPI------------------DLTKCGICKYAEDVCVILF---AFGFDD 39
           M  + +D ET                      +LT      Y  +         A     
Sbjct: 1   MRQIVLDTETTGLDWRNGDRVIEIGCVELLNRNLTGRHYHVYI-NPE-RGIDAEAIAV-- 56

Query: 40  HPVELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA------CFNLDIPIH 91
                 D + D      +    E+   D  ++ HN+ F+   L           LD    
Sbjct: 57  -HGITEDFLADKPTFSAIAAEFEDFIRDAELIIHNASFDVGFLNHELSRLGRGKLDSLCA 115

Query: 92  RWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIA 131
             I TL +A+       ++L A+ +  ++ +        L+ 
Sbjct: 116 GVIDTLKMAKEQNPGKKASLDALCDRHQIDNASRTLHGALLD 157


>gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana]
          Length = 872

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/430 (10%), Positives = 107/430 (24%), Gaps = 92/430 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            +D E  S                   L      +    L D +    +  +L+    + 
Sbjct: 142 AVDTEQHSLRSFLGFTA----------LIQISTHEED-FLVDTIALHDVMSILRPVFSDP 190

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  V H +  +   L+   +  I +     T                 +A ++ S+   
Sbjct: 191 NICKVFHGADNDVIWLQR--DFHIYVVNMFDT----------------AKACEVLSKPQR 232

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVT--------VTREIFKRL 175
               L+   C          + +   +         Y + D          +T E+ +  
Sbjct: 233 SLAYLLETVC--GVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLA 290

Query: 176 EPLSSKEQELWYLD---QTINDRGYCV------DVALAHTLNQIVDVERTKL-------- 218
              SS +    +L    +  N     +      D   +   + I+               
Sbjct: 291 TDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISL 350

Query: 219 --DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED-LTETTCQRVLSSNKK------- 268
             ++ +  L        R  ++   ++  +  +        TT + +  +          
Sbjct: 351 NAEELVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATES 410

Query: 269 ----------LTPQAIQVFNNRMRASRSAVLKLNTLVEAM-----NSDGRLRGT---LQF 310
                       P      ++  +     + KL+ L+  +      ++G    +      
Sbjct: 411 SPSLSSSVQSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSL 470

Query: 311 LGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIA 370
           L   +T   S          +    + +                     +    R  + A
Sbjct: 471 LVNFKTKLSSHSAP-----KQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCR--IYA 523

Query: 371 SEGKKLVVAD 380
           ++G+ L   D
Sbjct: 524 NDGRLLCYCD 533


>gi|320588480|gb|EFX00949.1| exosome complex exonuclease [Grosmannia clavigera kw1407]
          Length = 1631

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 40/183 (21%), Gaps = 39/183 (21%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             + +D E     T + +               + L      +    +          ++
Sbjct: 248 DVIAVDLEHHDFRTYTGL---------------LSLMQISTREKDWVVDTLTPWRHRLEI 292

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L E   +     V H +  +   L+    L I       T         P        +L
Sbjct: 293 LNEVFADPTKIKVFHGATSDIVWLQRDLGLYI--VGLFDTYFACDCLEYP------ARSL 344

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
               +K  +         K         R  P           Y + D      ++  + 
Sbjct: 345 AYLLKKFVDFDA-----DKKYQMADWRIRPLP------EEMLYYARSDTHFLLYVYDMVR 393

Query: 177 PLS 179
              
Sbjct: 394 NEL 396


>gi|254699857|ref|ZP_05161685.1| DNA polymerase III, epsilon chain [Brucella suis bv. 5 str. 513]
          Length = 224

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 73

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 74  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 130

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 131 DGARRLWRGDSTKLDHCLAKIGL 153


>gi|78065897|ref|YP_368666.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383]
 gi|77966642|gb|ABB08022.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 244

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 36/162 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTG---LNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E   D      +   +++ +++ ++ I  HN+ F+   L      LD+P       
Sbjct: 58  GLTTEFLSDKPKFAEVANQIRDFVQDAELII--HNAPFDLGFLDAEFARLDLPPFTKHCG 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             I TLV A+        +L A+ +   +S+        L+ 
Sbjct: 116 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLD 157


>gi|18310648|ref|NP_562582.1| hypothetical protein CPE1666 [Clostridium perfringens str. 13]
 gi|110800096|ref|YP_696353.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens ATCC 13124]
 gi|168211446|ref|ZP_02637071.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|168214501|ref|ZP_02640126.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens CPE str. F4969]
 gi|168216953|ref|ZP_02642578.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens NCTC 8239]
 gi|182626374|ref|ZP_02954128.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens D str. JGS1721]
 gi|18145329|dbj|BAB81372.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|110674743|gb|ABG83730.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens ATCC 13124]
 gi|170710592|gb|EDT22774.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170714024|gb|EDT26206.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens CPE str. F4969]
 gi|177908325|gb|EDT70873.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens D str. JGS1721]
 gi|182380871|gb|EDT78350.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens NCTC 8239]
          Length = 204

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 35/126 (27%)

Query: 1   MATLFIDFETR-----------------SPIDLTKCGICKY-------AEDVCVILFAFG 36
           M  LF D ET                  S       G   +        E   +  F+  
Sbjct: 1   MKLLFFDTETTGVKPGSICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFSLE 60

Query: 37  --FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIH 91
             ++      +    + +    + + LE   +  + HN  F+   LK            +
Sbjct: 61  KLYELSEGMYF----EDLYADFINDFLEADFI--IGHNVQFDIKFLKHELLGLGEFFEPN 114

Query: 92  RWICTL 97
              CT+
Sbjct: 115 NVFCTM 120


>gi|328954574|ref|YP_004371908.1| Protein of unknown function DUF1998 [Desulfobacca acetoxidans DSM
           11109]
 gi|328454898|gb|AEB10727.1| Protein of unknown function DUF1998 [Desulfobacca acetoxidans DSM
           11109]
          Length = 977

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 47/180 (26%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGF------DDHPVELWDCVHDPVMPQVLKE 59
           +D ET     L+   +  ++    + L +         + + +              L  
Sbjct: 795 LDIET----QLSAEEVGGWSRCSRMRL-SVAVLADLSQERYEIFY------EPQVDNLCR 843

Query: 60  ALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWIC------TLVLARSNGLPSALKAV 112
            L+  +  +V  N   F+  VL+   ++D+     +       TL+  R      +L  +
Sbjct: 844 RLQEAE-LVVGFNLKRFDYRVLQPYTDIDLFGLPTLDIFEEMQTLLGHRL-----SLGHL 897

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E            K L A                            YC+ DV +T  +F
Sbjct: 898 AE------------KTLGAAKSGDGLLALKL-----FKEGRLEELVAYCRRDVELTARLF 940


>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
 gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
          Length = 1433

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 45/142 (31%), Gaps = 32/142 (22%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LW------- 45
           ET    D+   G+     D  + L A       +                 +        
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITD 474

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           D + D      + +  E+   D T+VAHN+ F+   L        LD P +  I TL LA
Sbjct: 475 DMLTDAPEVGEVFKKFESWMGDHTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELA 534

Query: 101 RSNGL---PSALKAVGEALKLS 119
           R          L  + + L + 
Sbjct: 535 RFLFPEMKNHRLNTMCKKLDIE 556


>gi|149185255|ref|ZP_01863572.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21]
 gi|148831366|gb|EDL49800.1| DNA polymerase III epsilon subunit [Erythrobacter sp. SD-21]
          Length = 229

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 63/217 (29%), Gaps = 48/217 (22%)

Query: 1   MATLFIDFETRSPID----------------LTKCG--ICKY--------AEDVCVILFA 34
           M  +  D ET                     L   G     Y        A    V   +
Sbjct: 1   MREIVFDTETTGLDPRTGDRMVEIGCVEMVSLVPTGNTFHAYYNPERDMPAGAEAVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPI 90
             F        D  H       L + + +    ++AHN+ F+   L A   L     + +
Sbjct: 61  AAFLSDKPLFRDTAH------ELLDFIGDA--PLIAHNAGFDFGFLNAELALCEREAVCM 112

Query: 91  HRWICTLVLA--RSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNK 147
            R I T+ LA  R  G   +L A+     +  S +++ G  L A        E    R  
Sbjct: 113 SRMIDTVALAKKRHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVELKGGRQ- 171

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
                   L  E     V +T E+    +      +E
Sbjct: 172 ----IGLELAAETAA--VEITTEVVAVRKAPDGPRRE 202


>gi|300691174|ref|YP_003752169.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
 gi|299078234|emb|CBJ50881.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
          Length = 242

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 30/159 (18%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y   +  +   A       
Sbjct: 1   MRQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPEREIDAGAMAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-----IHRWI 94
            E   D      +   +++ ++  +  I  HN+ F+   L      L +P     +   I
Sbjct: 61  NEFVADKPKFAEIVAEIRDYVQGAEAII--HNAAFDLGFLDMEFQRLKLPSFREHLAGHI 118

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL+ AR        +L A+ + L +S+        L+ 
Sbjct: 119 DTLLEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLD 157


>gi|261840222|gb|ACX99987.1| DNA polymerase III subunit epsilon [Helicobacter pylori 52]
          Length = 323

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           FID ET     L    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 111 FIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYITELTGIAYEDTLNA 170

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 171 PSVHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 229 LSMRYSLSFLKELLGFG 245


>gi|229472263|gb|ACQ72646.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGEEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRK 143


>gi|225024402|ref|ZP_03713594.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC
           23834]
 gi|224942783|gb|EEG23992.1| hypothetical protein EIKCOROL_01277 [Eikenella corrodens ATCC
           23834]
          Length = 240

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 50/191 (26%), Gaps = 49/191 (25%)

Query: 1   MAT---LFIDFETRS------------------PIDLTKCGICKYA--------EDVCVI 31
           M     + +D ET                       LT   +  Y         E   V 
Sbjct: 1   MKHLRQIILDTETTGFYYDRDDRLIEFAGLEMIDRRLTGNYLHLYVHPERDIPEEAAKVH 60

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFN- 85
                         D +        + + + +      +V HN+ F+   L         
Sbjct: 61  GITL----------DQLEGKPKFAEIGQQIADFIAGTELVIHNAPFDVGFLNAEFRRAGL 110

Query: 86  --LDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
             ++      + TLV+AR+       +L A+   L++   K      LI      E +  
Sbjct: 111 PSVEELTANVVDTLVMARAMYPGQKNSLDALCTRLEVDRSKRVFHGALIDCELLSEVYLG 170

Query: 142 LYDRNKPNHRE 152
           +         +
Sbjct: 171 MTRSQFSLADQ 181


>gi|307702203|ref|ZP_07639163.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis
           ATCC 35037]
 gi|307624216|gb|EFO03193.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis
           ATCC 35037]
          Length = 829

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 83/284 (29%), Gaps = 40/284 (14%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51
             + +D E   T S   + + GI    E+  +I   +  D +P E  D            
Sbjct: 7   RYVVVDLEATSTGSKAKIIQVGI-VVIENGEIID-QYATDVNPHEPLDSHIKELTGLTDQ 64

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                     +   + E +++     VAHN  F+  +L         ++   R   T+ L
Sbjct: 65  RLAVAPEFSQVAGKIFELVKDG--IFVAHNVQFDANLLAEFLFFEGYELRTPRV-DTVEL 121

Query: 100 ARSNGL---PSALKAVGEALKLSSQKMEE-------GKELIARFCKGETHECLYDRNKPN 149
           A+          L  + + L +  +             EL+    +              
Sbjct: 122 AQVLYPQFEKYNLGILCQELGIELEHAHTALSDAQATAELLLYMRQKLFELPKGLLESLL 181

Query: 150 HREAWRLFGEY-CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                 L+  Y    +V   + +     P   +   L+   ++       +    A  ++
Sbjct: 182 DLADNLLYESYLLIEEVYQQQSL--LSSPDLMELHGLFLRKESKALVPRKLSKDFAKNIS 239

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
            +   ER +  +  E +   L        + +T L    G  L 
Sbjct: 240 LLGLEERPQQMEFAEKIEQLLEEHQTSFIQAQTGLGKTYGYLLP 283


>gi|161507225|ref|YP_001577179.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571]
 gi|160348214|gb|ABX26888.1| DNA polymerase III alpha chain [Lactobacillus helveticus DPC 4571]
          Length = 177

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------LFAFGFDDHPVELW---DC 47
           M  + +DFET +    + C +      D  ++           +F   +  V      D 
Sbjct: 1   MNFIAMDFETANHFPESACSLALVMVRDNKIVDRFYTVINPQMSFDARNIQVHQITADDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHN+ F+  V++     +N++ P +  I TL  ++ 
Sbjct: 61  KNAPTMAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNIEEPHYLVIDTLATSKL 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V +AL + 
Sbjct: 121 FEPELPNHKLDTVSDALDVE 140


>gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
 gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
           39073]
          Length = 921

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 6/72 (8%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PS 107
           P +   L +   +  +  V HN  F+   L             + TL L+R         
Sbjct: 72  PEVLPGLLDLFRD-AIP-VGHNGTFDLAFLNQALGHGWH-SPLLDTLALSRILFPCLASH 128

Query: 108 ALKAVGEALKLS 119
            L  + + L L 
Sbjct: 129 RLDYMSKYLTLE 140


>gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 228

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 32/148 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE- 59
           M  + +D ET     LT     +  E  CV LF        V       +  MP+   + 
Sbjct: 1   MREIVLDTETTGFDPLTG---HRIVEIGCVELFNH-LPTGKVYHQYVNPERDMPEEAFKV 56

Query: 60  ------ALENT---------------DVTIVAHNSYFERTV----LKACFNLDIPIHRWI 94
                  L +                D  +V HN+ F+       L       +P+ R I
Sbjct: 57  HGLSEQFLSDKPVFAEIVADFMDFIGDAILVIHNAEFDMRFINAELSRLGFQPLPMSRSI 116

Query: 95  CTLVLARSNGLP--SALKAVGEALKLSS 120
            T+ +AR       + L A+    ++ +
Sbjct: 117 DTVAMARKKFPGAQANLDALCRRFEIDN 144


>gi|120403469|ref|YP_953298.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1]
 gi|119956287|gb|ABM13292.1| 3'-5' exonuclease [Mycobacterium vanbaalenii PYR-1]
          Length = 426

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 51/193 (26%), Gaps = 34/193 (17%)

Query: 15  DLTKCGICKYAEDVC-VILFAFG----------FDDHPVELWDCVHDPVMPQVLKEALEN 63
           DL   G   +A D      F +                V +    H     +VL    E 
Sbjct: 48  DLLASGHGPFAVDAERASGFRYSNRAYLVQIRRAGAGSVLIDPVSHGGDPLEVLAPVAEV 107

Query: 64  -TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQ 121
            +D   V H +  +   L     + +       T +  R        L A+ + L     
Sbjct: 108 LSDAEWVLHAADQDLPCLAE---IGMRPPSLYDTELAGRLANYERVNLAAMVQRL----- 159

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                        +        D +K    + W     Y   DV V  ++   +  +  +
Sbjct: 160 ----------LGLQLTKGHGAADWSKRPLPQDW---LNYAALDVEVLVDLRHAISEVLQE 206

Query: 182 EQELWYLDQTIND 194
           + +  +  +    
Sbjct: 207 QGKEGWAAEEFEY 219


>gi|120611120|ref|YP_970798.1| DNA polymerase III subunit epsilon [Acidovorax citrulli AAC00-1]
 gi|120589584|gb|ABM33024.1| DNA polymerase III, epsilon subunit [Acidovorax citrulli AAC00-1]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 47/161 (29%), Gaps = 36/161 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFDD 39
             + +D ET     L+  G  +  E  CV L                       A     
Sbjct: 3   RQIVLDTETTG---LSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPERDSHEDALKVHG 59

Query: 40  HPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI------HR 92
              E   D      +   + E L+  ++ I  HN+ F+   L     L            
Sbjct: 60  ISNEFLKDKPKFAEVVDEILEYLQGAEIII--HNAAFDVGFLNKELELTGRPAFTSYVES 117

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              TLV+A+        +L A+ + L + +        L+ 
Sbjct: 118 VTDTLVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLD 158


>gi|329114274|ref|ZP_08243036.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
 gi|326696350|gb|EGE48029.1| DNA polymerase III subunit epsilon [Acetobacter pomorum DM001]
          Length = 224

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 33/148 (22%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL-- 57
           M   +  D ET            +  E   + L                 +  +P+    
Sbjct: 1   MKRSILFDTETTGLDP---ATGDRVIEIAALELVG-DLPTGRTFHKLIDPERDVPEEASR 56

Query: 58  -----KEALENT---------------DVTIVAHNSYFERTV----LKACFNLDIPIHRW 93
                +  LE                 D  ++AHN+ F+       LK      + + R 
Sbjct: 57  VHGFTRADLEGKPKFAEVADDFLAFVGDDPLIAHNARFDFGFMNAELKRAGKKTLGLDRM 116

Query: 94  ICTLVLARSN--GLPSALKAVGEALKLS 119
           + TL +AR    G+P++L A+     + 
Sbjct: 117 VDTLDMARERFPGMPNSLDALCRRFGVD 144


>gi|262212123|gb|ACY35678.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRELVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
 gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
          Length = 1433

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 45/142 (31%), Gaps = 32/142 (22%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LW------- 45
           ET    D+   G+     D  + L A       +                 +        
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITD 474

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           D + D      + +  E+   D T+VAHN+ F+   L        LD P +  I TL LA
Sbjct: 475 DMLTDAPEVGEVFKKFESWMGDHTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELA 534

Query: 101 RSNGL---PSALKAVGEALKLS 119
           R          L  + + L + 
Sbjct: 535 RFLFPEMKNHRLNTMCKKLDIE 556


>gi|239827467|ref|YP_002950091.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus sp. WCH70]
 gi|239807760|gb|ACS24825.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           WCH70]
          Length = 921

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 55/193 (28%), Gaps = 28/193 (14%)

Query: 1   MA--TLFIDFETRSPID-----LTKCGICKYAEDVCVI-LFAFGFDDH---PVELWDCVH 49
           M    + ID ET   +      + + G+    E+  ++  F+  F+     P  +    +
Sbjct: 1   MKDRFVIIDLETTGNVPKKGDRIIQLGM-VVIENGKIVDRFSSFFNPERDIPPFVQQLTN 59

Query: 50  -DPVMPQVLKEALENTDVT--------IVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
               M        E              VAHN  F+   L+       L       I T+
Sbjct: 60  ITEQMVADAPSFAEEAAKVADMLQQSYFVAHNVSFDLQFLQEELHMAGLPPFSGPTIDTV 119

Query: 98  VLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN-HREA 153
            LAR          L  + + L +   +  +         K         R  P    + 
Sbjct: 120 ELARIVFPTAESYKLGDLAKQLHIDHDQPHQADSDAEVTAKLFIALLNRLRQLPFITLQH 179

Query: 154 WRLFGEYCKGDVT 166
            +    Y K D+ 
Sbjct: 180 LKRLSPYLKSDLY 192


>gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1401

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 80/282 (28%), Gaps = 44/282 (15%)

Query: 4   LFIDFETRSPI----DLTKCGICKYAEDVCVILFAFGFD---DHPVELWDCV-------- 48
           +  D ET        D+ + G  K      +  F    D   + P ++ +          
Sbjct: 389 VVFDLETTGLNPSQHDIIEIGAVKIKAGEKIAEFETFIDIDKNVPAKITEITGINTSMLT 448

Query: 49  ---HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
                    +   + + +    +VAHN+ F+   L+       ++   +  + TL L+R+
Sbjct: 449 GAPKLKAAIERFIDFIGDG--VLVAHNADFDYGFLRTALQKLEINRKEYTVLDTLALSRA 506

Query: 103 NG---LPSALKAVGEA--------LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH- 150
                    L  + E          +  +      + L       E  +    ++  ++ 
Sbjct: 507 LIKDSKNYKLNTLAEYFSVELDDHHRALADADATAEILKKLLAIIEKDDNSNLKDINDYI 566

Query: 151 -REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
            +  W+    +      V     K+      K   + +LD         +  +      +
Sbjct: 567 SKIDWKDLRPFHA----VLLAKNKKGLKNLYKLVSISHLDNFYRKP--RILKSKLLQHRK 620

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
            + +       ++      + +  +   K    L+    L  
Sbjct: 621 GLLIGSACESGQIYQ--AFINNRPKNEIKKIAKLYDYLELQP 660


>gi|257900260|ref|ZP_05679913.1| DNA polymerase subunit III [Enterococcus faecium Com15]
 gi|257838172|gb|EEV63246.1| DNA polymerase subunit III [Enterococcus faecium Com15]
          Length = 295

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 55/168 (32%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA- 60
             + IDFET     L          D  ++          ++         + Q +K   
Sbjct: 123 DYVVIDFETTGLSPL----------DSEILQI------GAIKYESNEEIDRIYQNIKPFR 166

Query: 61  --------------LEN------------------TDVTIVAHNSYFERTVLKACF---N 85
                         LE+                  +  T+VAHN+ F+   L       N
Sbjct: 167 SNISKRITKITGLELEDVVNMPTFEDFSPQLMSFISCYTLVAHNAPFDLKFLLHQLNENN 226

Query: 86  LDIPI-HRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELI 130
           +++    R I TL LAR +       L  + + L L +   +  ++ +
Sbjct: 227 IELNQRIRVIDTLPLARRHFETPNHKLITLKDYLNLDNNSHDALEDCL 274


>gi|323137715|ref|ZP_08072791.1| ribonuclease D [Methylocystis sp. ATCC 49242]
 gi|322397012|gb|EFX99537.1| ribonuclease D [Methylocystis sp. ATCC 49242]
          Length = 393

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 43/161 (26%), Gaps = 19/161 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             V +             D + + +        + N DV  V H +  +  ++       
Sbjct: 37  PKVCVIQIA-SPEEAVAIDALSEGIDLTPFFSLMANADVVKVFHAARQDLEIIWRLA--R 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T V A   G           L           EL+    +    +     + 
Sbjct: 94  LIPAPLFDTQVAAMVCGFG----EQASYL-----------ELVKAITRANLDKSSRFTDW 138

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
                +     +Y   DVT  R+I+  L     +   L +L
Sbjct: 139 SRRPLSAAQ-IDYAIADVTHLRDIYTTLRQRLERSNRLEWL 178


>gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 1435

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    K  + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 481 DAPEIEEVLTEFKAWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSTNAVIDTLELSRT 538

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 539 INTSYGKHGLNFLAKKYGVE 558


>gi|293365088|ref|ZP_06611805.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus oralis ATCC 35037]
 gi|291316538|gb|EFE56974.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus oralis ATCC 35037]
          Length = 830

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 83/284 (29%), Gaps = 40/284 (14%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51
             + +D E   T S   + + GI    E+  +I   +  D +P E  D            
Sbjct: 8   RYVVVDLEATSTGSKAKIIQVGI-VVIENGEIID-QYATDVNPHEPLDSHIKELTGLTDQ 65

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                     +   + E +++     VAHN  F+  +L         ++   R   T+ L
Sbjct: 66  RLAVAPEFSQVAGKIFELVKDG--IFVAHNVQFDANLLAEFLFFEGYELRTPRV-DTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQKMEE-------GKELIARFCKGETHECLYDRNKPN 149
           A+          L  + + L +  +             EL+    +              
Sbjct: 123 AQVLYPQFEKYNLGILCQELGIELEHAHTALSDAQATAELLLYMRQKLFELPKGLLESLL 182

Query: 150 HREAWRLFGEY-CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                 L+  Y    +V   + +     P   +   L+   ++       +    A  ++
Sbjct: 183 DLADNLLYESYLLIEEVYQQQSL--LSSPDLMELHGLFLRKESKALVPRKLSKDFAKNIS 240

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
            +   ER +  +  E +   L        + +T L    G  L 
Sbjct: 241 LLGLEERPQQMEFAEKIEQLLEEHQTSFIQAQTGLGKTYGYLLP 284


>gi|167562346|ref|ZP_02355262.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
           EO147]
 gi|167574356|ref|ZP_02367230.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
           C6786]
          Length = 240

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 36/187 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET       + G  +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTGLN--ARAG-DRVIEIGCVELLNRRLTGNNLHFYVNPGRDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E   D      +   L++ + + ++ I  HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLSDKPKFAEIVDELRDFVRDAELII--HNAPFDLGFLDAEFSLLGLPTFTDHCA 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TLV A+        +L A+ +   +S+        L+      E +  +    +  
Sbjct: 116 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESL 175

Query: 150 HREAWRL 156
             +    
Sbjct: 176 VIDMLDE 182


>gi|62317520|ref|YP_223373.1| exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|83269503|ref|YP_418794.1| DNA polymerase III subunit epsilon:exonuclease [Brucella melitensis
           biovar Abortus 2308]
 gi|148557905|ref|YP_001257609.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189022776|ref|YP_001932517.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|225686408|ref|YP_002734380.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella melitensis ATCC 23457]
 gi|254691019|ref|ZP_05154273.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 6 str. 870]
 gi|254695674|ref|ZP_05157502.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698803|ref|ZP_05160631.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705882|ref|ZP_05167710.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
           M163/99/10]
 gi|254711110|ref|ZP_05172921.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis B2/94]
 gi|254712430|ref|ZP_05174241.1| DNA polymerase III, epsilon chain [Brucella ceti M644/93/1]
 gi|254715502|ref|ZP_05177313.1| DNA polymerase III, epsilon chain [Brucella ceti M13/05/1]
 gi|254732250|ref|ZP_05190828.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 4 str. 292]
 gi|256015402|ref|YP_003105411.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|256029491|ref|ZP_05443105.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
           M292/94/1]
 gi|256111454|ref|ZP_05452474.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157686|ref|ZP_05455604.1| DNA polymerase III, epsilon chain [Brucella ceti M490/95/1]
 gi|256253341|ref|ZP_05458877.1| DNA polymerase III, epsilon chain [Brucella ceti B1/94]
 gi|256256204|ref|ZP_05461740.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 9 str. C68]
 gi|256262453|ref|ZP_05464985.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|260167417|ref|ZP_05754228.1| DNA polymerase III, epsilon chain [Brucella sp. F5/99]
 gi|260544758|ref|ZP_05820579.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260564713|ref|ZP_05835198.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|261756828|ref|ZP_06000537.1| DNA polymerase III [Brucella sp. F5/99]
 gi|62197713|gb|AAX76012.1| exonuclease, hypothetical [Brucella abortus bv. 1 str. 9-941]
 gi|82939777|emb|CAJ12783.1| DNA polymerase III, epsilon subunit:Exonuclease [Brucella
           melitensis biovar Abortus 2308]
 gi|148369190|gb|ABQ62062.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021350|gb|ACD74071.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
 gi|225642513|gb|ACO02426.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Brucella melitensis ATCC 23457]
 gi|255998062|gb|ACU49749.1| exonuclease, putative [Brucella microti CCM 4915]
 gi|260098029|gb|EEW81903.1| DNA polymerase III [Brucella abortus NCTC 8038]
 gi|260152356|gb|EEW87449.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
 gi|261736812|gb|EEY24808.1| DNA polymerase III [Brucella sp. F5/99]
 gi|263092188|gb|EEZ16485.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
 gi|326410781|gb|ADZ67845.1| DNA polymerase III, epsilon subunit [Brucella melitensis M28]
          Length = 224

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 73

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 74  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 130

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 131 DGARRLWRGDSTKLDHCLAKIGL 153


>gi|330445493|ref|ZP_08309145.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489684|dbj|GAA03642.1| ribonuclease D [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 375

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 75/253 (29%), Gaps = 26/253 (10%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D +    M + L   L +  V  V H    +  V +            + T
Sbjct: 47  FDGEHLSLIDPLEIDDM-EPLWALLRDQSVIKVLHACGEDLEVFQHHAG--CLPTPMLDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +        +    ++++G+       +  T                  
Sbjct: 104 QLMAAFLGHGISTGFGALVKEYVGVELDKGEARTNWLARPLT----------------AK 147

Query: 157 FGEYCKGDVTVTREIFK----RLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
             +Y   DV   + +++    ++E     E      +  +  R   VD   A+   +   
Sbjct: 148 QLDYAAADVHYLKPLYETLLAKVEATGYMEALQQECNSVMLRRIKPVDPEKAYLDIKNAW 207

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
                    L+ +    V  ++  +    ++  E  L           +  +  +K   +
Sbjct: 208 QLYPSQLAVLQKVAAWRVREAQKRDIALNFIVKELHLW---KLARFNIKSRAGLEKEGFE 264

Query: 273 AIQVFNNRMRASR 285
            +++  +  R  +
Sbjct: 265 PMEIQRHGNRLLK 277


>gi|308185636|ref|YP_003929767.1| DNA polymerase II [Pantoea vagans C9-1]
 gi|308056146|gb|ADO08318.1| DNA polymerase II [Pantoea vagans C9-1]
          Length = 784

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 52/216 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTQHGELYCIGLEG-CGQRQVFMLGPPNGDASALDFELIYLDSRPQLLEALN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
           +     + DV  +  N   F+  VL+     + + + + R                    
Sbjct: 210 QWFAEHDPDVL-IGWNVVQFDLRVLQKHADRYGIPLRLGRQQAALEWREHGFKPGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L++V + L      + EGK +   + + E     + 
Sbjct: 269 ASGRLIIDGIDALKSAFWDFPSFSLESVSQQL------LGEGKAIDNPWDRMEEINWRFA 322

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            +KP           Y   D  +   IF +   +  
Sbjct: 323 NDKP-------ALARYNLKDCELVTRIFHKTAIMPF 351


>gi|167945574|ref|ZP_02532648.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 58

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 215 RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL----EDLTETTCQRVLSSNKKL 269
             +L+Q+   L      +    +++    F E GL +         +T + VL      
Sbjct: 1   MHQLEQQAHELAGHS-FNMASPKQIGHIFFEELGLPVIAKTPKGAPSTAESVLQELADQ 58


>gi|76810101|ref|YP_333003.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           1710b]
 gi|121601053|ref|YP_992607.1| DNA polymerase III subunit epsilon [Burkholderia mallei SAVP1]
 gi|124385495|ref|YP_001026592.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10229]
 gi|126441990|ref|YP_001058508.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668]
 gi|126455280|ref|YP_001065768.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           1106a]
 gi|134282747|ref|ZP_01769450.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
 gi|217423557|ref|ZP_03455058.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
 gi|226196200|ref|ZP_03791785.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811761|ref|YP_002896212.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238563612|ref|ZP_00438559.2| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
           4]
 gi|242318034|ref|ZP_04817050.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106b]
 gi|251767848|ref|ZP_02268597.2| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
 gi|254177751|ref|ZP_04884406.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           10399]
 gi|254180217|ref|ZP_04886816.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1655]
 gi|254197669|ref|ZP_04904091.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
 gi|254199436|ref|ZP_04905802.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
 gi|254258454|ref|ZP_04949508.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710a]
 gi|254298053|ref|ZP_04965506.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           406e]
 gi|254358851|ref|ZP_04975124.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
           2002721280]
 gi|76579554|gb|ABA49029.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710b]
 gi|121229863|gb|ABM52381.1| DNA polymerase III, epsilon subunit [Burkholderia mallei SAVP1]
 gi|124293515|gb|ABN02784.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
           10229]
 gi|126221483|gb|ABN84989.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 668]
 gi|126228922|gb|ABN92462.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106a]
 gi|134245833|gb|EBA45924.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
 gi|147749032|gb|EDK56106.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
 gi|148027978|gb|EDK85999.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
           2002721280]
 gi|157807726|gb|EDO84896.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           406e]
 gi|160698790|gb|EDP88760.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           10399]
 gi|169654410|gb|EDS87103.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
 gi|184210757|gb|EDU07800.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1655]
 gi|217393415|gb|EEC33436.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
 gi|225931786|gb|EEH27788.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504517|gb|ACQ96835.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238520320|gb|EEP83781.1| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
           4]
 gi|242141273|gb|EES27675.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1106b]
 gi|243061566|gb|EES43752.1| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
 gi|254217143|gb|EET06527.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           1710a]
          Length = 253

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 36/190 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET       + G  +  E  CV L                       A    
Sbjct: 14  MRQIILDTETTGLN--ARAG-DRIIEIGCVELLNRRLTGKNLHFYVNPERDSDPGALAVH 70

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-----IH 91
               E   D      +   L++ + + ++ I  HN+ F+   L      L +P       
Sbjct: 71  GLTTEFLSDKPKFAEIVDPLRDFVRDAELII--HNAPFDLGFLDAEFALLGLPSFTDHCA 128

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TLV A+        +L A+ +   +S+        L+      E +  +    +  
Sbjct: 129 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESL 188

Query: 150 HREAWRLFGE 159
             +     G+
Sbjct: 189 VIDMLDEAGD 198


>gi|264678862|ref|YP_003278769.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
 gi|299532427|ref|ZP_07045819.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
 gi|262209375|gb|ACY33473.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
 gi|298719665|gb|EFI60630.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 41/153 (26%), Gaps = 42/153 (27%)

Query: 2   ATLFIDFETRSPIDLT--------------------------KCGICKYAEDVCVILFAF 35
             + +D ET     +                             G   + + + V     
Sbjct: 3   RQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFNAGRDSHPDALRVHGIT- 61

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI----- 90
                   L D          + E L+     ++ HN+ F+   L     L         
Sbjct: 62  -----TEFLKDKPRFEEKIDEIWEYLQ--GAELIIHNAPFDLGFLNNELKLAKRPPLKQC 114

Query: 91  -HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
               + TLV+A+        +L ++ + L + +
Sbjct: 115 VGGVLDTLVMAKEMYPGKRNSLDSLCDRLGVDN 147


>gi|227550341|ref|ZP_03980390.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
           TX1330]
 gi|257886431|ref|ZP_05666084.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
 gi|227180543|gb|EEI61515.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
           TX1330]
 gi|257822287|gb|EEV49417.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
          Length = 297

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 55/168 (32%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA- 60
             + IDFET     L          D  ++          ++         + Q +K   
Sbjct: 125 DYVVIDFETTGLSPL----------DSEILQI------GAIKYESNEEIDRIYQNIKPFR 168

Query: 61  --------------LEN------------------TDVTIVAHNSYFERTVLKACF---N 85
                         LE+                  +  T+VAHN+ F+   L       N
Sbjct: 169 SNISKRITKITGLELEDVVNMPTFEDFSPQLMSFISCYTLVAHNAPFDLKFLLHQLNENN 228

Query: 86  LDIPI-HRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELI 130
           +++    R I TL LAR +       L  + + L L +   +  ++ +
Sbjct: 229 IELNQRIRVIDTLPLARRHFETPNHKLITLKDYLNLDNNSHDALEDCL 276


>gi|71908088|ref|YP_285675.1| 3'-5' exonuclease [Dechloromonas aromatica RCB]
 gi|71847709|gb|AAZ47205.1| 3'-5' exonuclease [Dechloromonas aromatica RCB]
          Length = 217

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 53/184 (28%), Gaps = 29/184 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            +  D E  S     K    + +    ++  A    D  V L          +VL+  L 
Sbjct: 48  VIGFDTE--SKPTFLK---GEVSTGPHLVQLA---TDEHVFLLPVAFAAN-HEVLRRILS 98

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
             D+  V      +R+VL++   +++     +                 +GEA++    +
Sbjct: 99  AADILKVGLGLGNDRSVLRSRLGIELN--NVLD----------------LGEAMRGPGHR 140

Query: 123 MEEGKELI--ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
              G ++     F +          +   +         Y   D  V  +++        
Sbjct: 141 GTVGAKVAVAHYFGQKFQKSKKVGTSNWANPRLNERQLLYAANDAHVALQLYHAWLRDPK 200

Query: 181 KEQE 184
             + 
Sbjct: 201 HREP 204


>gi|306845957|ref|ZP_07478524.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
 gi|306273592|gb|EFM55437.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
          Length = 235

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 30/151 (19%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K   D  ++  +                   GFD+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVKIEGD-ELLTQSLYLIFDPRKDSSPQAEAIHGFDNW 73

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 74  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDIHYIQREFRKAEVDMLDQPVYCTM 130

Query: 98  VLARSN--GLPSALKAVGEALKLSSQKMEEG 126
             AR    G  + L      + L+      G
Sbjct: 131 EGARRLWRGDSAKLDHCLAKIGLARTGYRHG 161


>gi|239815139|ref|YP_002944049.1| DNA polymerase III, subunit epsilon [Variovorax paradoxus S110]
 gi|239801716|gb|ACS18783.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus S110]
          Length = 235

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 32/147 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK--- 58
             + +D ET     L+     +  E  CV LFA     + + ++           LK   
Sbjct: 3   RQIVLDTETTG---LSAENGDRIIELGCVELFARKLTGNDLHIYFNPERESHEDALKVHG 59

Query: 59  ---EALENT---------------DVTIVAHNSYFERTVLKACFNL-DIPI-----HRWI 94
              + L +                   ++ HN+ F+   L     L  +P          
Sbjct: 60  LTTDFLRDKPKFATLANDIVEYLRGAELIIHNAAFDVGFLNKELELAGLPPLRSFVGEVT 119

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLS 119
            TL +A+        +L A+ +   + 
Sbjct: 120 DTLAMAKQVYPGKRNSLDALCDRFGVD 146


>gi|121711303|ref|XP_001273267.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus clavatus
           NRRL 1]
 gi|119401418|gb|EAW11841.1| 3'-5' exonuclease/helicase (Wrn), putative [Aspergillus clavatus
           NRRL 1]
          Length = 391

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 57/198 (28%), Gaps = 20/198 (10%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             +  D E     T+S    +   + + A    + LF       P +      +  +   
Sbjct: 145 KVIGFDMEWKPQATKSAGIRSNVSLIQIANSERIALFQIAL-FKPAK----KAEDFVAAS 199

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L++ LE+ ++  V      + T L+    +D        TL L+        L    E+ 
Sbjct: 200 LRKILESPEIMKVGVTIKADCTRLRKYLGIDTRG-----TLELSHL----YKLVKYSESN 250

Query: 117 -KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            KL +++     + +         +    R             +Y   D      +F  +
Sbjct: 251 PKLINKRPVSLSDQVEEHFGMPLEKDGNVRCSNWATALNYRQVQYAATDPYACFRLFDTM 310

Query: 176 EPLSSKEQELWYLDQTIN 193
                    +  L +   
Sbjct: 311 NTKRKALDPMPPLPEYAE 328


>gi|187924850|ref|YP_001896492.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716044|gb|ACD17268.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 244

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 32/195 (16%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  L +D ET                       LT   +  Y   +      A       
Sbjct: 1   MRQLILDTETTGLNARTGDRILELGCVEMVNRRLTGNNLHFYINPERESDPGALAVHGLT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----HRWI 94
            E   D      +    ++ +++ D+ I  HN+ F+   L      L +P         I
Sbjct: 61  TEFLSDKPKFAEIADQFRDFIQDADLII--HNAPFDIGFLDAEFALLGLPPVKTYCGEII 118

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL  A+        +L A+ +   +S+        L+      E +  +    +    +
Sbjct: 119 DTLARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVID 178

Query: 153 AWRLFGEYCKGDVTV 167
                  +  GD   
Sbjct: 179 MLGE--SHAGGDAHA 191


>gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 721

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 36/147 (24%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFG----------------FDDH--------PVELW 45
           T +  D    G+     D  +I                      D          P+   
Sbjct: 530 TYTVFDTETTGLEPSNGD-EIIQIGAARIVNNRLLRQETFNQIVDPEIPLKPASIPIHGI 588

Query: 46  --DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLV 98
             D V       V+  A      D  ++AHN+ F+   L   +   N+       + TL+
Sbjct: 589 TEDMVRGQPNIDVVLPAFHEFCEDTVLIAHNAAFDMRFLQLKEERTNIRF-TQPVLDTLL 647

Query: 99  LARSNGL---PSALKAVGEALKLSSQK 122
           L+           L  + E L ++  K
Sbjct: 648 LSAVVHPNQESHKLDVILERLGITIGK 674


>gi|312078568|ref|XP_003141795.1| hypothetical protein LOAG_06211 [Loa loa]
 gi|307763041|gb|EFO22275.1| hypothetical protein LOAG_06211 [Loa loa]
          Length = 1064

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 103/343 (30%), Gaps = 40/343 (11%)

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADL-AGIEARVLAWMAGEQ 396
            + +   H       +    Q+I   ++S V   +   +V AD+ +  +           
Sbjct: 635 TVTRRAVHKLWLTAINAKDDQMIGTNLKSMVECPQDWHIVGADVDSQEQWIAAMLGDCCV 694

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPA----QVTKDQRAIGKVMELALGYQGGAKAFQKMA 452
            +  A  T     +    ++ N        +     R   KV+  A  Y  G     +  
Sbjct: 695 GRGIAGATPFSNMLLAGRKADNSDLHSVVAKEVGISRDKAKVLNYARLYGSGVAHAAEFL 754

Query: 453 STTGLNLNTF---------AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
             +G+N                 K  +  +  E+  ++ RW  +N     ++  ++    
Sbjct: 755 MQSGMNSERALSVSNKLFATTKGKRFNFLKLNENYNDYFRWYIDNLCTSKMKTYYLYANG 814

Query: 504 ERVKKAWRQKHSRVS-ELWNELHQAF--EQTIENGKAIIARKRRDVPLVY---------- 550
                 +R +  +++    + L++    +   +    +   K   +  +Y          
Sbjct: 815 SYFLPEYRIRQGKLTLNFEDWLYEGVWNKLREKGQDEVDFSKDWLIKQIYDECTEYQLYT 874

Query: 551 --MKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTR-----EYTYGGKLTENIVQ 603
              + D  N + +  +        +     Y  T   +  R        Y   +   +VQ
Sbjct: 875 GGFESDTFNYLELTLNNPKPCTPVLNCQLGYCLTPLPKDVRDHEYFLKKYRRSIINWVVQ 934

Query: 604 AVSRD------ILAEGMMNATKAGYDIVLTVHDEIVCETPDTD 640
           + + D      +  + +    +      L++HDEI    P  D
Sbjct: 935 SSAVDFLHLLIVCMKWLCEIYQIEARFALSIHDEIRYIVPAED 977



 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 50/175 (28%), Gaps = 39/175 (22%)

Query: 47  CVHDPVMPQ-----VLKEALENTDVTIV----AHNSYFERTVLKACFNLDIPIHRWICTL 97
            V+   +P+      L     +           HN  F+R+ ++  +       R+  T+
Sbjct: 180 LVNGGDIPELYRLNHLIAFETDEKDLKYRLIMGHNVAFDRSRVREQYYRKGTNTRFWDTM 239

Query: 98  VLARSNGLPSALKA--VGEALKLSSQKMEEG-----------------KELIARFCKGET 138
            +A        +    V    K  ++  + G                   L  + C   +
Sbjct: 240 SMA---IPIYGMADHQVALYEKKDTEVDDSGPVGWIDYWRSLVCKNSLSALHEKLCGTTS 296

Query: 139 HECLYDRNKPNHREA--------WRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
            + L    +    +         ++    YC  DV    E+++ L P   K    
Sbjct: 297 LKPLNKSLQTFFVKEPIDEIRRSFQDLTTYCAYDVVACFELYQVLYPEFRKRFPH 351


>gi|190892568|ref|YP_001979110.1| DNA polymerase III protein, epsilon subunit [Rhizobium etli CIAT
           652]
 gi|190697847|gb|ACE91932.1| probable DNA polymerase III protein, epsilon subunit [Rhizobium
           etli CIAT 652]
          Length = 196

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 25/141 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI---------------LFAFGFDD-HPVE 43
           M T+ IDFET +    + C +   + E+  V                          P  
Sbjct: 1   MKTIAIDFETANEQRGSACSVGLAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIRPEH 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLA 100
           + D    P +     E +  +  T++AHN+ F+ +V +A  +L     P   ++C+L +A
Sbjct: 61  VEDAPEFPEVMDEFHEDI--SGATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMA 118

Query: 101 RSNGLP---SALKAVGEALKL 118
           +          L  + E L L
Sbjct: 119 QRIWPHFLSHRLNLIAEHLGL 139


>gi|259507628|ref|ZP_05750528.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
 gi|259164807|gb|EEW49361.1| DNA polymerase III epsilon subunit [Corynebacterium efficiens
           YS-314]
          Length = 494

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 23/144 (15%)

Query: 2   ATLFIDFETRSPI--DLTKCGICKYAEDVCVILFA-FGFDDHPVELWDCVH--------- 49
             +  D ET +     + + G+ +Y   V V   + F     P+  ++  +         
Sbjct: 125 DFVAFDVETANDDWGSICQIGLVRYENGVEVDSTSWFCTPPEPLNFFEPANIAIHGITAE 184

Query: 50  ---DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
                     +   + +   D+ +VAHN+ F+ T +        ++ P+  + C+L L+R
Sbjct: 185 QVAGEPAFAEVLPKMVDFVGDLPLVAHNAQFDFTAISRACAAAGIEAPVFNFGCSLALSR 244

Query: 102 SNGL---PSALKAVGEALKLSSQK 122
           S+ L      L  V +AL +  +K
Sbjct: 245 SSRLKFHNHRLPTVAQALGVELRK 268


>gi|152979979|ref|YP_001352248.1| hypothetical protein mma_0558 [Janthinobacterium sp. Marseille]
 gi|151280056|gb|ABR88466.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 195

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 27/141 (19%)

Query: 2   ATLFIDFETRSPI----DLTKCGICKYAEDVCVILFAFGFDDHPVE-------------- 43
             +F+D ET         +T+ GI     D C+  ++   +                   
Sbjct: 6   KLIFVDLETTGANLVNDRITEIGIVAVDPDGCIDRWSTFVNPGRPIPEFIQGLTGISDEM 65

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLA 100
           +        +   ++E L++     +AHN+ F+   L   F      +     +CT+ L+
Sbjct: 66  VESAPMFETLADTVRERLQDG--LFIAHNARFDYGFLHHAFVRSGHVLN-AEMLCTVKLS 122

Query: 101 RSNGLP---SALKAVGEALKL 118
           R+         L ++     L
Sbjct: 123 RALFPAEKKHNLDSLIARHDL 143


>gi|25028571|ref|NP_738625.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
 gi|23493856|dbj|BAC18825.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           efficiens YS-314]
          Length = 569

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 23/144 (15%)

Query: 2   ATLFIDFETRSPI--DLTKCGICKYAEDVCVILFA-FGFDDHPVELWDCVH--------- 49
             +  D ET +     + + G+ +Y   V V   + F     P+  ++  +         
Sbjct: 200 DFVAFDVETANDDWGSICQIGLVRYENGVEVDSTSWFCTPPEPLNFFEPANIAIHGITAE 259

Query: 50  ---DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
                     +   + +   D+ +VAHN+ F+ T +        ++ P+  + C+L L+R
Sbjct: 260 QVAGEPAFAEVLPKMVDFVGDLPLVAHNAQFDFTAISRACAAAGIEAPVFNFGCSLALSR 319

Query: 102 SNGL---PSALKAVGEALKLSSQK 122
           S+ L      L  V +AL +  +K
Sbjct: 320 SSRLKFHNHRLPTVAQALGVELRK 343


>gi|305665672|ref|YP_003861959.1| hypothetical protein FB2170_05225 [Maribacter sp. HTCC2170]
 gi|88710430|gb|EAR02662.1| hypothetical protein FB2170_05225 [Maribacter sp. HTCC2170]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 69/230 (30%)

Query: 2   ATLFIDFET------RSPIDLTKCGI----------------------CKYAEDVCVILF 33
             LF+D ET         +D +K  +                        +AE   +I  
Sbjct: 9   NILFLDIETVPEVENYVDLDDSKKELWDHKSQYQRKDEFTAEEFYERAGIWAEFGKIICI 68

Query: 34  AFGF----DDHPVELWDCVHDPV--MPQVLKEALEN----TDVTIVAHNSY-FERTVLKA 82
           + G+     D         H     + +  K  L +        + AHN   F+   +  
Sbjct: 69  SVGYFNMKGDIREFRVTSFHGEESKLLREFKTLLNSHFRYPKNLLCAHNGKEFDFPYIAR 128

Query: 83  CF---NLDIP-------IHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEG 126
                 +D+P          W      T+ L +        +LK +   L + S K    
Sbjct: 129 RMIIHGIDLPHKLDLFGKKPWEVPHLDTMELWKFGDYKHFTSLKLMANILGIPSPK---- 184

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     E  +    R+     +      +YC+ DV  T ++F RL 
Sbjct: 185 ----------EDIDGSMVRDVYYIDKDIDRIIKYCELDVVTTAQVFLRLR 224


>gi|119387836|ref|YP_918870.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
 gi|119378411|gb|ABL73174.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
           PD1222]
          Length = 706

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 26/139 (18%)

Query: 6   IDFETRSPID-----LTKCGICKYAEDVCVILFAFG--FDDH---PVELWD-------CV 48
            D ET          + + G  +      +    F    D     P E           V
Sbjct: 519 FDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHPEMV 578

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARS- 102
                   +  A     +D  +V HN  F+   L   +A   L       + TL+LA   
Sbjct: 579 QGQPRIAEVLPAFHAYASDTVLVGHNVAFDMRFLQLKEAATGLRFD-QPVLDTLLLASIA 637

Query: 103 --NGLPSALKAVGEALKLS 119
             +    +L+A+   L + 
Sbjct: 638 QPHEPSHSLEAIAARLGVE 656


>gi|170698522|ref|ZP_02889593.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170136606|gb|EDT04863.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 375

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 22/136 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWDCV-------HDPVMPQ 55
           +F+D ET                ++  +  + +    +P +             D ++  
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTTLVNPGQAIPPFIQQLTGISDEMVRD 75

Query: 56  V-----LKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL 105
                 L  AL         VAHN+ F+R  L+A F    +       +CT+ L+R+   
Sbjct: 76  APSFASLAPALVERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFP 134

Query: 106 ---PSALKAVGEALKL 118
                 L A+ E   L
Sbjct: 135 REARHGLDALIERHGL 150


>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1433

 Score = 47.8 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+      D T+VAHN+ F+   L        LD P +  I TL 
Sbjct: 473 TDDMLTDAPEVGEVFKKFQAWMGDHTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPDMKNHRLNTLCKKLDIE 556


>gi|306818778|ref|ZP_07452500.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
 gi|304648464|gb|EFM45767.1| ribonuclease D [Mobiluncus mulieris ATCC 35239]
          Length = 422

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 59/193 (30%), Gaps = 37/193 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E        + G  +Y +   ++      +D    L D    P + + L  A+  
Sbjct: 58  VALDTE--------RAGAFRYFQGAYLV--QLRREDTGTFLIDPTAFPDL-EPLGTAI-- 104

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLSSQ 121
                + H++  +   L     + +       T + A+        L ++ E  L +  +
Sbjct: 105 GKAEWILHDATTDMPWLAE---IGMRPKLLFDTELAAKLLNFERFGLGSLTEQVLGIMLE 161

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K     +                R  P      + + EY   DV    ++ + L     +
Sbjct: 162 KEHSAADW-------------STRPLP------QSWLEYAALDVEFLVDLRQALWLQLGE 202

Query: 182 EQELWYLDQTIND 194
             +  + +Q    
Sbjct: 203 AGKDDWAEQEFEH 215


>gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 1439

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 26/141 (18%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDHPVE--------------L 44
            +  D ET         + +    K      +  F+   + H                 +
Sbjct: 423 YVVFDIETTGLSIINCKIIELAGVKMRGGQEIDRFSTFINPHEKIPYHIQQLTNITDEMV 482

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP--IHRWICTLVLAR 101
            D        +   E + +    +VAHN+ F+   +   C  + +P  ++  + TL LAR
Sbjct: 483 VDAPELEPKLREFVEFIGDA--VLVAHNARFDIGFIQANCKAIGLPEVMNPVLDTLELAR 540

Query: 102 SNGLP---SALKAVGEALKLS 119
                     L  +    K++
Sbjct: 541 FLHPSMKNHRLNTLSARYKIN 561


>gi|257889197|ref|ZP_05668850.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
 gi|257825269|gb|EEV52183.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
          Length = 295

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 55/168 (32%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA- 60
             + IDFET     L          D  ++          ++         + Q +K   
Sbjct: 123 DYVVIDFETTGLSPL----------DSEILQI------GAIKYESNEEIDRIYQNIKPFR 166

Query: 61  --------------LEN------------------TDVTIVAHNSYFERTVLKACF---N 85
                         LE+                  +  T+VAHN+ F+   L       N
Sbjct: 167 SNISKRITKITGLELEDVVNMPTFEDFSPQLMSFISCYTLVAHNAPFDLKFLLHQLNENN 226

Query: 86  LDIPI-HRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELI 130
           +++    R I TL LAR +       L  + + L L +   +  ++ +
Sbjct: 227 IELNQRIRVIDTLPLARRHFETPNHKLITLKDYLNLDNNSHDALEDCL 274


>gi|227548036|ref|ZP_03978085.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079890|gb|EEI17853.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 223

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 50/192 (26%), Gaps = 39/192 (20%)

Query: 2   ATLFIDFETRSPID-----------------------LTKCGICKYAEDVCVILFAFGFD 38
             L  D ET S                          L   G+    E   V        
Sbjct: 8   RMLSFDLETTSANPGEARIVTSALVRIDGSSVTSTEELADPGVEIPEEAAAVHGIT---- 63

Query: 39  DHPVELWDCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                     HD V+ +    +++  E+    +V  N+ ++ TVL+              
Sbjct: 64  TEKARAEGRPHDEVLAETVAEIRKCWEDGLTLVVF-NAPYDLTVLRRLTGTFTVDGPVFD 122

Query: 96  TLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
            LV+ R+          L A+ E   +   +++   E  +             R  P   
Sbjct: 123 PLVIDRAKDRYRKGKRNLGALSEIYGV---RLDNAHEATSDATAAARIAWKQVRMWPELA 179

Query: 152 EA-WRLFGEYCK 162
              +    EY  
Sbjct: 180 TMSFGELMEYQA 191


>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
          Length = 1436

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 35/125 (28%), Gaps = 12/125 (9%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    K+  E+    +VAHN+ F+   L        L    +  I TL LAR 
Sbjct: 482 DAPEVSEVVTDFKKWAEDG--ILVAHNASFDMGFLNISYQRAGLKKASNPVIDTLELARF 539

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFG 158
                    L  + + L +    + +    I              +        +     
Sbjct: 540 LYPSMKNHRLNTLAKKLDVE---LTQHHRAIYDAEATGYILAKLLKETYEKEIKYHDQLN 596

Query: 159 EYCKG 163
           +Y   
Sbjct: 597 DYMGE 601


>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 1449

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 19/153 (12%)

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHR 92
              D  V+  D   +  +       L+  D+  VAHN+ F+   L        L    + 
Sbjct: 482 SITDDDVK--DAPFEEEVMTNFYNWLDEDDIL-VAHNAKFDLGFLDKSFERLGLKNKNNA 538

Query: 93  WICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            I TL ++R+         L  + +  K+          L+         +   +     
Sbjct: 539 SIDTLFISRAENKEAKRHGLSNLAKLYKV---------RLVQHHRAIYDTKATAEIFVKM 589

Query: 150 HREAWRLFGEY-CKGDVTVTREIFKRLEPLSSK 181
             + ++L  EY  + D  +  ++  +       
Sbjct: 590 LDQLYKLGIEYHNEIDEKIDLKLAHKRSRTFPC 622


>gi|310823888|ref|YP_003956246.1| ribonuclease d [Stigmatella aurantiaca DW4/3-1]
 gi|309396960|gb|ADO74419.1| ribonuclease D [Stigmatella aurantiaca DW4/3-1]
          Length = 389

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 16/128 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D E  S           +A    +           + L+D +   V   +L   + 
Sbjct: 29  ELAVDLEADS----------MHAFRARLCFLQVAT-PTDIFLFDTLAPGVDASLLAPLMA 77

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG-EALKLSS 120
           + + T   H +  +   L       I +     T   A   G P   L  +  E L +  
Sbjct: 78  DPERTKYFHAAQGDLQFLAEA---GIRVRGLFDTHRAATLLGWPKVGLADIARERLGVEL 134

Query: 121 QKMEEGKE 128
            K  +  +
Sbjct: 135 PKEHQQSD 142


>gi|134045738|ref|YP_001097224.1| exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
 gi|132663363|gb|ABO35009.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus
           maripaludis C5]
          Length = 191

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 35/123 (28%), Gaps = 36/123 (29%)

Query: 3   TLFIDFETRS----------------PIDLTKCGICKYAED------VCVILFAFGFDDH 40
            +F+D ET                   ++L K     Y  D        V        D 
Sbjct: 2   YVFLDTETTGLHPGQIAQLSYLVTDEDLNLKKVFNQYYLVDHMSRSAAKVHGLTMDILDE 61

Query: 41  PVELWDCVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWI 94
                   +          +++ LE++ +  + HN  F+   LKA       +       
Sbjct: 62  ------LSNGMTFEDTVDEVRDDLEDSVI--IGHNISFDIRFLKAEFERLGPEYIPKDKF 113

Query: 95  CTL 97
           CT+
Sbjct: 114 CTM 116


>gi|323351851|ref|ZP_08087502.1| DNA polymerase III [Streptococcus sanguinis VMC66]
 gi|322121908|gb|EFX93640.1| DNA polymerase III [Streptococcus sanguinis VMC66]
          Length = 814

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 73/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G      +  +I       ++         D      + + +KE   L + 
Sbjct: 8   YAVVDLEATGTGS---NAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLNDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSWHGIFLRRSQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER++  +    +   L        + +T L    G  L 
Sbjct: 242 GLEERSEQLKFARFMEEALDQQEPSFLEAQTGLGKTFGYLLP 283


>gi|256372239|ref|YP_003110063.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008823|gb|ACU54390.1| Exonuclease RNase T and DNA polymerase III [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 475

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARS 102
           D      + +     LE     +V HN  F+R+ L        + +P    + TL L+R 
Sbjct: 79  DAPSARTVIERTARLLE--GTVMVGHNVRFDRSFLGAAADAAGITLPEVPVLDTLTLSRV 136

Query: 103 NG----LPSALKAVGEALKLSS 120
                     L  +   L+L  
Sbjct: 137 LLDGEVPNHRLATLAHYLQLPP 158


>gi|192359256|ref|YP_001982513.1| DNA polymerase III subunit epsilon [Cellvibrio japonicus Ueda107]
 gi|190685421|gb|ACE83099.1| DNA polymerase III, epsilon subunit [Cellvibrio japonicus Ueda107]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 47/157 (29%)

Query: 1   MATLFIDFETRSPI------------------DLTKCGICKY--------AEDVCVILFA 34
           M  + +D ET                       LT     +Y        A    V   +
Sbjct: 1   MRQIVLDTETTGLEYSQGHRIIEIGCVELMNRRLTGRHYHQYINPEREVDAGAFAVHGIS 60

Query: 35  FG-FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH-- 91
               +D PV          +       + + ++ I  HN+ F+   +    N+ +     
Sbjct: 61  NAMLNDKPVF-------ARIVDDFLNFVGDAELII--HNAAFDIGFIDHELNM-LRPGFG 110

Query: 92  ------RWICTLVLARSNGLPS--ALKAVGEALKLSS 120
                   I TL+LAR+        L A+ +   + +
Sbjct: 111 SIKGRCGVIDTLLLARNKHPGQKNNLDALCKRYGVDN 147


>gi|325293446|ref|YP_004279310.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
 gi|325061299|gb|ADY64990.1| DNA polymerase III, epsilon subunit [Agrobacterium sp. H13-3]
          Length = 202

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 19/98 (19%)

Query: 1  MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI---------------LFAFGFDD-HPVE 43
          M T+ IDFET +    + C I   + ED  ++                F        P +
Sbjct: 1  MKTIAIDFETANEERGSACSIGLAWIEDGEIVRVEERLIRPKDMRFSPFNIAVHGIRPAD 60

Query: 44 LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK 81
          + D    P + +   +       T++AHN+ F+ +V++
Sbjct: 61 VEDAPEFPDVMEEFIDDFH--GATMIAHNAAFDFSVMR 96


>gi|296171911|ref|ZP_06852975.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295893910|gb|EFG73681.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 430

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 46/169 (27%), Gaps = 26/169 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE--NTDVTIVAH 71
           +D  +    +Y+    +I          V +    H     + L+   E  + D   + H
Sbjct: 57  VDAERASGFRYSNRAYLIQIRRA-GAGTVLIDPVSHGADPLEALRPVAEVLDED-EWILH 114

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELI 130
           ++  +   L     + +       T +  R  G     L  + E L              
Sbjct: 115 SADQDLPCLAE---VGLQPPALYDTELAGRLAGFERVNLATMVERL-------------- 157

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                        D +K    E W     Y   DV +  E+   +  + 
Sbjct: 158 -LGSGLAKGHGAADWSKRPLPEEW---LNYAALDVELLIELRGAIADVL 202


>gi|262342273|gb|ACY54647.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342305|gb|ACY54663.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342315|gb|ACY54668.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342327|gb|ACY54674.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342329|gb|ACY54675.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARCDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|46578672|ref|YP_009480.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|46448083|gb|AAS94739.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|311232545|gb|ADP85399.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 1121

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 64/182 (35%), Gaps = 43/182 (23%)

Query: 2    ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF----DDHPVELWDCVHDPVMPQVL 57
              + +D ETR      + G    A+    +  +        D     +     P M   L
Sbjct: 947  RVMVLDVETRRSA--AEVGGWHRADR---MGVSIAVLHDSGDDSFTAYPQDEVPAMLHRL 1001

Query: 58   KEALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLV------LARSNGLPSALK 110
            +EA       +V  N   F+ TVL      D+     +  ++      L+       +L 
Sbjct: 1002 REA-----DLVVGFNIVRFDYTVLSPFAPFDLHTLPTLD-MLQKVKDRLSYRV----SLD 1051

Query: 111  AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
             + +A  L++ K  +G + +  + +G                   L  EYC+ DV +TR+
Sbjct: 1052 NLAQA-TLNAPKSADGLQALRWWQEGR----------------LDLIAEYCRKDVELTRD 1094

Query: 171  IF 172
            ++
Sbjct: 1095 LY 1096


>gi|120597845|ref|YP_962419.1| 3'-5' exonuclease [Shewanella sp. W3-18-1]
 gi|120557938|gb|ABM23865.1| 3'-5' exonuclease [Shewanella sp. W3-18-1]
          Length = 301

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 30/215 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             +  D ETR           +  +   + L      D    L+          +LK  L
Sbjct: 114 RVIGFDTETR-------ASFERGVQHP-LSLIQIATHD-TCYLFQHALLAEQLGLLKPVL 164

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+ ++  V      +   L   + +++                L   L  +G   ++ ++
Sbjct: 165 EDENILKVGVGLRSDGQALTREWGINVTPR-----------LDLNWVLAQLGAGKEMGTR 213

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           ++     L  R  K +       +  P           Y   D             L  K
Sbjct: 214 QLVAT-LLQKRIDKPKKVTLSNWQQVPLTS----TQIVYAALDA---LAAQHCFSELIDK 265

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            +  +    ++      +   L   L    + +  
Sbjct: 266 LKPFY--LASLEANTQLLTQNLTVRLASYFEQDNE 298


>gi|256823144|ref|YP_003147107.1| DNA polymerase III subunit epsilon [Kangiella koreensis DSM 16069]
 gi|256796683|gb|ACV27339.1| DNA polymerase III, epsilon subunit [Kangiella koreensis DSM 16069]
          Length = 233

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 42/155 (27%), Gaps = 43/155 (27%)

Query: 1   MATLFIDFETRSPID-----LTKCG-------------------ICKYAEDV--CVILFA 34
           M  + +D ET          + + G                     +  +     V    
Sbjct: 1   MRQIVLDTETTGLEPYDGHRIIEIGCVELVNRKFTGNHYHQYLQPDREIDQGAMEVHGIT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLD 87
             F +      D      +     E +E     +V HN+ F+   L              
Sbjct: 61  NEFLEDKPRFVD------VVDEFLEFIE--GAELVIHNAPFDVGFLDHELSMLDSSKGKL 112

Query: 88  IPIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
                 + TLVLAR        +L A+ +  ++ +
Sbjct: 113 SDYCTVLDTLVLARQMHPGQRNSLDALCKRYEIDN 147


>gi|121594487|ref|YP_986383.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
 gi|120606567|gb|ABM42307.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 48/159 (30%), Gaps = 32/159 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK--- 58
             + +D ET     L+  G  +  E  CV L       + + L+           LK   
Sbjct: 3   RQIVLDTETTG---LSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPERDSHEDALKVHG 59

Query: 59  ---EALENT---------------DVTIVAHNSYFERTVLKACF------NLDIPIHRWI 94
              E L +                   ++ HN+ F+   L           L   +   I
Sbjct: 60  ISNEFLRDKPKFAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVI 119

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL +A+        +L ++ + L + +        L+ 
Sbjct: 120 DTLAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLD 158


>gi|300858286|ref|YP_003783269.1| hypothetical protein cpfrc_00868 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685740|gb|ADK28662.1| hypothetical protein cpfrc_00868 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206006|gb|ADL10348.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis C231]
 gi|302330559|gb|ADL20753.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276241|gb|ADO26140.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudotuberculosis I19]
          Length = 232

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 39/156 (25%)

Query: 2   ATLFIDFETRSPID-----------------------LTKCGICKYAEDVCVILFA--FG 36
             L  D ET S                          L   GI    E   V      + 
Sbjct: 15  KVLSFDLETTSANPHEARIVSSALVRIDSNGAHPRELLADPGIEIPEEAAKVHGITTEYA 74

Query: 37  FDDHPVELWDCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
            +          H+ V+ +    +++A  +    IV +N+ ++ TVL+      +     
Sbjct: 75  REHGR------PHEEVLKETIAAIQQAWADGFTLIV-YNAAYDLTVLRKLTGDFVVTGPV 127

Query: 94  ICTLVLARSNGL----PSALKAVGEALKLSSQKMEE 125
               V+ ++          L  + +   +      E
Sbjct: 128 FDPYVIDKALDKFRRGKRTLTDLCQHYNVRLDNAHE 163


>gi|298369358|ref|ZP_06980676.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283361|gb|EFI24848.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 240

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 54/180 (30%), Gaps = 38/180 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFDD 39
             + +D ET     L   G  +  E   + +                       A     
Sbjct: 4   RQIILDTETTG---LYAEGGDRLVEFAGLEMINRQMTDNNLHLYIHPERDMPEEAAKVHG 60

Query: 40  HPVELWDCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLK---ACFN---LDIPI 90
             +E+ +  + P   +    + + + + ++ I  HN+ F+   L           ++   
Sbjct: 61  LTIEVLEEKNAPPFAEVGRQIADFIRDAELII--HNAKFDIGFLNMEFRRMGLPSIEELG 118

Query: 91  HRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                TL +AR       ++L A+   L +   K      LI     GE +  +  +   
Sbjct: 119 CTVTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQFD 178


>gi|296110637|ref|YP_003621018.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
 gi|295832168|gb|ADG40049.1| exonuclease [Leuconostoc kimchii IMSNU 11154]
          Length = 177

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 48/151 (31%), Gaps = 39/151 (25%)

Query: 1   MATLFIDFET----------------------RSPIDLTKCGICKYAEDVCVILFAFGFD 38
           M  + +DFET                           L K      A +  V        
Sbjct: 1   MNFIAMDFETANHEKHSAVSIAIAVVRHNQVVDKFYSLIKPETYFSARNTAVHGLKES-- 58

Query: 39  DHPVELWDCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRW 93
                  D    P  P+V K    L   D  +VAHN+ F+ ++LK   A + ++ P +  
Sbjct: 59  -------DVAQAPKFPEVWKIIAPLFKEDKLVVAHNAAFDNSILKGTLAYYGIEEPHYML 111

Query: 94  ICTLVLARSNGL---PSALKAVGEALKLSSQ 121
           + T+  +R          L  V E   ++  
Sbjct: 112 LDTVRTSRKLLPDFKNHKLNTVAENFGITLD 142


>gi|222110838|ref|YP_002553102.1| DNA polymerase iii subunit epsilon [Acidovorax ebreus TPSY]
 gi|221730282|gb|ACM33102.1| DNA polymerase III, epsilon subunit [Acidovorax ebreus TPSY]
          Length = 237

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 48/159 (30%), Gaps = 32/159 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK--- 58
             + +D ET     L+  G  +  E  CV L       + + L+           LK   
Sbjct: 3   RQIVLDTETTG---LSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPERDSHEDALKVHG 59

Query: 59  ---EALENT---------------DVTIVAHNSYFERTVLKACF------NLDIPIHRWI 94
              E L +                   ++ HN+ F+   L           L   +   I
Sbjct: 60  ISNEFLRDKPKFAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVI 119

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL +A+        +L ++ + L + +        L+ 
Sbjct: 120 DTLAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLD 158


>gi|262342285|gb|ACY54653.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARCDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|260102518|ref|ZP_05752755.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           helveticus DSM 20075]
 gi|260083660|gb|EEW67780.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           helveticus DSM 20075]
 gi|328461804|gb|EGF34034.1| DNA polymerase III alpha chain [Lactobacillus helveticus MTCC 5463]
          Length = 177

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------LFAFGFDDHPVELW---DC 47
           M  + +DFET +    + C +      D  ++           +F   +  V      D 
Sbjct: 1   MNFIAMDFETANHFPESACSLALVMVRDNKIVDRFYTVINPQMSFDARNIQVHQITADDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHN+ F+  V++     +N++ P +  I TL  ++ 
Sbjct: 61  KNAPTMAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNIEEPHYLVIDTLATSKL 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V +AL + 
Sbjct: 121 FEPELPNHKLDTVSDALDVE 140


>gi|253996734|ref|YP_003048798.1| DNA polymerase III subunit epsilon [Methylotenera mobilis JLW8]
 gi|253983413|gb|ACT48271.1| DNA polymerase III, epsilon subunit [Methylotenera mobilis JLW8]
          Length = 227

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 46/165 (27%), Gaps = 42/165 (25%)

Query: 1   MATLFIDFETRSPI------------------DLTKCGICKYAE-----DV---CVILFA 34
           M  +F+D ET                       LTK     Y       D     V   +
Sbjct: 1   MRQIFLDTETTGLYHAQGHRVIEIAAVEVVNRRLTKHHFHYYLNPDRDIDPGAQEVHGIS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN------LDI 88
             F        D  +       L   + + ++  + HN+ F+   L           ++ 
Sbjct: 61  LEFLQDKPRFADIAN------ELITFIADAEL--IMHNAPFDVGFLNCELGLIGQKKVEE 112

Query: 89  PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              +   TL +A+         L A+ +   + + K      L+ 
Sbjct: 113 ISAKVTDTLKIAKEMRPGQRNNLDALCKYFGIDNSKRTLHGALLD 157


>gi|115372643|ref|ZP_01459950.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
 gi|115370364|gb|EAU69292.1| 3'-5' exonuclease, putative [Stigmatella aurantiaca DW4/3-1]
          Length = 379

 Score = 47.8 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 16/128 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D E  S           +A    +           + L+D +   V   +L   + 
Sbjct: 19  ELAVDLEADS----------MHAFRARLCFLQVAT-PTDIFLFDTLAPGVDASLLAPLMA 67

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVG-EALKLSS 120
           + + T   H +  +   L       I +     T   A   G P   L  +  E L +  
Sbjct: 68  DPERTKYFHAAQGDLQFLAEA---GIRVRGLFDTHRAATLLGWPKVGLADIARERLGVEL 124

Query: 121 QKMEEGKE 128
            K  +  +
Sbjct: 125 PKEHQQSD 132


>gi|260466883|ref|ZP_05813067.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
 gi|259029385|gb|EEW30677.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
          Length = 383

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 19/163 (11%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           + L           L D +   +  +   + + N  V  V H +  +  ++      D+ 
Sbjct: 39  LCLIQMAAPGVTA-LIDPLSSDIDLRPFFKLMANEAVVKVFHAARQDIEIIV-HLG-DLV 95

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            H    T V A   G   +                   +L+ R       +     +  +
Sbjct: 96  PHPVFDTQVAAMVCGFGDS---------------VSYDQLVQRITGARLDKSSRFTDWRH 140

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
              + +   +Y   DVT   E+++ L    ++E    +L++ +
Sbjct: 141 RPLSDKQL-DYALADVTHLIEVYQHLNAELARENRAHWLNEEM 182


>gi|171463544|ref|YP_001797657.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193082|gb|ACB44043.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 236

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 36/186 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-----DCVHD----- 50
           M  + +D ET            +  E  C+ +      D     +     D         
Sbjct: 1   MRQVILDTETTGLNP---ATGDRIIEIGCIEMVGRRLTDRTFHYYINPERDIDAGAFAVH 57

Query: 51  -------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI------H 91
                          + + L E ++  ++ I  HN+ F+   L   F L           
Sbjct: 58  GLSREFLSDKPIFANIVEQLIEFVDGAEILI--HNAAFDLGFLDNEFALLKRPPFRNLAS 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           +   TL+ AR        +L A+ E   +S++       L+      E +  +    +  
Sbjct: 116 KITDTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYVAMTRGQEDL 175

Query: 150 HREAWR 155
             +   
Sbjct: 176 SIDLID 181


>gi|262212157|gb|ACY35695.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGCYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEVRQAYIEAIDVL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             +     + +           ++ 
Sbjct: 121 DKLLGAIKKASERGFIKALDGRKII 145


>gi|86358436|ref|YP_470328.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli CFN 42]
 gi|86282538|gb|ABC91601.1| probable DNA polymerase III, epsilon subunit protein [Rhizobium
           etli CFN 42]
          Length = 196

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 25/141 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI---------------LFAFGFDD-HPVE 43
           M T+ IDFET +    + C +   + E+  V                          P  
Sbjct: 1   MKTIAIDFETANEQRGSACSVGLAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIRPEH 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLA 100
           + D    P +     E +  +  T++AHN+ F+ +V +A  +L     P   ++C+L +A
Sbjct: 61  VEDAPEFPEVMDEFHEDI--SGATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMA 118

Query: 101 RSNGLP---SALKAVGEALKL 118
           +          L  + E L L
Sbjct: 119 QRIWPHFLSHRLNLIAEHLGL 139


>gi|227875468|ref|ZP_03993609.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
 gi|227844022|gb|EEJ54190.1| ribonuclease D [Mobiluncus mulieris ATCC 35243]
          Length = 397

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 59/193 (30%), Gaps = 37/193 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E        + G  +Y +   ++      +D    L D    P + + L  A+  
Sbjct: 33  VALDTE--------RAGAFRYFQGAYLV--QLRREDTGTFLIDPTAFPDL-EPLGAAI-- 79

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLSSQ 121
                + H++  +   L     + +       T + A+        L ++ E  L +  +
Sbjct: 80  GKAEWILHDATTDMPWLAE---IGMRPKLLFDTELAAKLLNFERFGLGSLTEQVLGIMLE 136

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K     +                R  P      + + EY   DV    ++ + L     +
Sbjct: 137 KEHSAADW-------------STRPLP------QSWLEYAALDVEFLVDLRQALWLQLGE 177

Query: 182 EQELWYLDQTIND 194
             +  + +Q    
Sbjct: 178 AGKDDWAEQEFEH 190


>gi|154251704|ref|YP_001412528.1| DNA polymerase III subunit epsilon [Parvibaculum lavamentivorans
           DS-1]
 gi|154155654|gb|ABS62871.1| DNA polymerase III, epsilon subunit [Parvibaculum lavamentivorans
           DS-1]
          Length = 228

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 42/164 (25%)

Query: 1   MATLFIDFETR--SPID---LTKCG-------------ICKYAED--------VCVILFA 34
           M  + +D ET   SP D   L + G                Y +           +   +
Sbjct: 1   MREIVLDTETTGISPNDGHRLVEIGCLELFNHVVTGKYFHAYIDPERDMPEGAFRIHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEAL-ENTDVTIVAHNSYFERTV----LKACFNLDIP 89
             F               +       + E+    +V HN+ F+       LK      +P
Sbjct: 61  SDFLRGK------PKFAEVADDFLAFIGEDP---LVIHNAAFDMGFINAELKRIGRPALP 111

Query: 90  IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           + R   TL +AR     +  +L A+     + +    +   L+ 
Sbjct: 112 VSRATDTLDIARRKFPGAQNSLDALCRRFGVDNSGRTKHGALLD 155


>gi|324506474|gb|ADY42763.1| DNA polymerase subunit gamma-1 [Ascaris suum]
          Length = 790

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 30/146 (20%)

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA--VGEALKLSSQKME 124
            ++ HN  ++R+ ++  +       R+  T+ +A        +    +    K   ++ E
Sbjct: 223 IVIGHNVAYDRSRVREQYLRKQTGTRFWDTMSMA---IPIYGMADHQLLLYEKNDLEEDE 279

Query: 125 EGK-----ELIARFCK-------------GETHECLYDRNKPNHREAWRL-------FGE 159
            G      +  AR CK                             E             +
Sbjct: 280 RGHSGWVDDWKARVCKNSLAALHEKLCSQKSKLIVKKSMQSFFVNEPIEEIRDNFQDLVQ 339

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQEL 185
           YC  DV    E+++ L P   K    
Sbjct: 340 YCAEDVLACLELYQALYPEFVKRFPH 365



 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 60/227 (26%), Gaps = 18/227 (7%)

Query: 244 FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTL--VEAMNSD 301
           F    L            V     K     I+    R      A   ++    + A    
Sbjct: 560 FDFHKLPHPKGG---NANVGDPLAKDFHIEIEEGILR------ATRYIDEFSAIVACKKT 610

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
            R  G  +     +   W         +         + +   H       +P   ++I 
Sbjct: 611 TRFWGNYRARFNEQVTVWLDEEGNEGAIAPSVIPAGTVTRRAVHKLWLTAINPKDNEMIG 670

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVT------TYAR 415
             ++S V  SEG  LV AD+   E + +A + G+    K                     
Sbjct: 671 TGLKSMVECSEGWNLVGADVDSQE-QWIAALLGDCAVGKHTAGATPFSNMLLAGNKADHS 729

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTF 462
             +   A+     R   KV+  A  Y  G     +    +GL     
Sbjct: 730 DLHSVVAKEVGISRDKAKVLNYARLYGSGLNHAVEFLKQSGLADEQA 776


>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
 gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1390

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 45/150 (30%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +D ET                   ++           ++ D  H             
Sbjct: 383 YVVLDLETTGLNP----------RSDEIMEIG-AVKTRDGKVIDEFHTFVRPNKLNKKSL 431

Query: 51  -------------PVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACF---NLDIPIHRW 93
                        P + QVL + LE   D  +VAHN+ F+ T LK       ++     +
Sbjct: 432 NITGITEDMLKDAPDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNP-PY 490

Query: 94  ICTLVLARSN----GLPSALKAVGEALKLS 119
           I TL L+++         +L  + +   L 
Sbjct: 491 IDTLRLSQALLRNKIKSFSLDKLVDHFGLG 520


>gi|23098512|ref|NP_691978.1| hypothetical protein OB1057 [Oceanobacillus iheyensis HTE831]
 gi|22776738|dbj|BAC13013.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 195

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 24/139 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICK-YAEDVCVI-----LF--AFGFDDHPVELWDCVHDP-- 51
               IDFET +    + C +      D  +I     L      F    V +     +   
Sbjct: 3   KFAAIDFETANEKRNSACSVGVVIMNDTEIIDEFYTLINPLASFRSGNVFIHGITEEQVQ 62

Query: 52  --VMPQVLKE----ALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRW--ICTLVLARS 102
                  L       LE+    ++AHN+ F+ +VL+   N  DIP   +  +CT+ ++R 
Sbjct: 63  EAPTFAELWPTLSAYLED--TILIAHNASFDMSVLRQSLNKYDIPCPNYTSLCTVKISRL 120

Query: 103 NGL---PSALKAVGEALKL 118
                    L  V     +
Sbjct: 121 IWPQLENHKLHTVANHHGI 139


>gi|312881132|ref|ZP_07740932.1| Exonuclease RNase T and DNA polymerase III [Aminomonas paucivorans
           DSM 12260]
 gi|310784423|gb|EFQ24821.1| Exonuclease RNase T and DNA polymerase III [Aminomonas paucivorans
           DSM 12260]
          Length = 282

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 27/144 (18%)

Query: 1   MATLFIDFETR-----SPIDLTKCGICKYAEDVC-VILF----AFG-FDDHPVELWDCVH 49
           M    +DFET      SP  L    + +       +       AF  F+     +     
Sbjct: 1   MNFAALDFETANRYPESPCSLGVVVVREGRVVAERLWGIRPHRAFRTFERGNTWIHGITA 60

Query: 50  D--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLV 98
                    P + + ++  LE   + + AHN+ F+  VL+     + L  P  R +CT+ 
Sbjct: 61  AAAREWPEFPPVWEEVRPLLE--GLPLAAHNAPFDLEVLRRTLALYALTPPPARGLCTVR 118

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           L+R          L  V  AL  S
Sbjct: 119 LSRRAWPGLESYKLHRVARALGFS 142


>gi|255065954|ref|ZP_05317809.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
 gi|255049865|gb|EET45329.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
          Length = 255

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 54/180 (30%), Gaps = 38/180 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFDD 39
             + +D ET     L   G  +  E   + +                       A     
Sbjct: 19  RQIILDTETTG---LYAEGGDRLVEFAGLEMINRQITGNNLHLYVHPERDMPEEAAKVHG 75

Query: 40  HPVELWDCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLK---ACFN---LDIPI 90
             +E+ +  + P   +    + + + + ++ I  HN+ F+   L           ++   
Sbjct: 76  LTIEVLEEKNAPPFAEVGRQIADFIRDAELII--HNAKFDVGFLNMEFRRMGLPSIEELG 133

Query: 91  HRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                TL +AR       ++L A+   L +   K      LI     GE +  +  +   
Sbjct: 134 CTVTDTLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQFD 193


>gi|294950345|ref|XP_002786583.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239900875|gb|EER18379.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 387

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 42/132 (31%), Gaps = 14/132 (10%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             +       +     ++D    P + Q L   L +  V  V H+   + + L     + 
Sbjct: 55  GQLCTIQIATERGDAFMFD-ACRPGVVQSLAPLLSDPSVLKVFHDCREDSSALYHQHGIS 113

Query: 88  IPIHRWIC---TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +          T++      + + +       +L  Q + +G++ ++    G   +  + 
Sbjct: 114 LDC--VFDTQATML------VGNRMDHQTGYWELVRQVLFDGEKEVSHEVLG--DDPQFK 163

Query: 145 RNKPNHREAWRL 156
                  E WR 
Sbjct: 164 TQMAEDPELWRR 175


>gi|254522635|ref|ZP_05134690.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
 gi|219720226|gb|EED38751.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
          Length = 243

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 40/156 (25%), Gaps = 45/156 (28%)

Query: 1   MATLFIDFETRSP-----IDLTKCG-------------------ICKYAEDV--CVILFA 34
           M  + +D ET          + + G                        E     V    
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLT 60

Query: 35  FGF-DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNL 86
             F DD P           +       +      ++ HN+ F+   L          +  
Sbjct: 61  LEFLDDKPGF-------AQIADEFLAFI--DGAELIIHNAAFDLGFLDNELSLLGPQYGK 111

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
                  I TL +AR        +L A+ + L + +
Sbjct: 112 ITDRCTVIDTLAMARERFPGQRNSLDALCKRLGVDN 147


>gi|46190621|ref|ZP_00121275.2| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bifidobacterium longum DJO10A]
          Length = 211

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 28/139 (20%)

Query: 2   ATLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDD--------------HPVE 43
             + +D ET         +T+ G  +  E   V  F    +                   
Sbjct: 9   DYVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAM 68

Query: 44  LWDCVHDPVMPQVLKEALENTDV-----TIVAHNSYFERTVLKACFNLDIPIHRW----I 94
           + D      +       L           IV HN  F+   L       I    +     
Sbjct: 69  VADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLD-YNTRHIAGCGFACADY 127

Query: 95  CTLVLARSNGLPSALKAVG 113
            T+ ++R+         + 
Sbjct: 128 DTMQISRALFPAQRHHRLA 146


>gi|262342259|gb|ACY54640.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 205

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 54/207 (26%), Gaps = 58/207 (28%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVC----------VILFAFGFDDHPVELW-----DCVHD 50
           +D ET      T   I   A  V           ++  + GF    +          V D
Sbjct: 14  VDLETTGLNPKTSEIIEIAAIKVEGNVITEKFHTLVKPSIGFIPEHITKLTGITNPLVID 73

Query: 51  PVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGL 105
               + +         +  I+AHN+ F+ + L          +  +  ICTLVLA     
Sbjct: 74  KPKIEQVFPHFLEFTKNSIIIAHNAKFDISFLNEASFQLTGKLIQNPVICTLVLANRLFP 133

Query: 106 ---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                +L  +     +   +                                        
Sbjct: 134 DLKSKSLTNLAYHFNIPYHRKHR-----------------------------------AL 158

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLD 189
            D  VT E+FK+        +    +D
Sbjct: 159 ADAEVTYELFKKFVEYLQNYKVNKVID 185


>gi|257068547|ref|YP_003154802.1| ribonuclease D [Brachybacterium faecium DSM 4810]
 gi|256559365|gb|ACU85212.1| ribonuclease D [Brachybacterium faecium DSM 4810]
          Length = 399

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 51/188 (27%), Gaps = 31/188 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           +D  +    +Y+    ++      +      +        MP  L+  L   +   V H 
Sbjct: 44  VDAERASSYRYSSRAYLV--QLRTEAAGTALIDPLAF--TMPATLRSLLA--EREWVLHA 97

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEA-LKLSSQKMEEGKELI 130
           +  +   L     + +       T + AR  G+    L AV E  L L   K     +  
Sbjct: 98  AGQDLPSLAE---IGLEPGGLFDTELAARLLGMERVGLGAVVEDTLGLRLAKEHSAADWS 154

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
            R                   E W     Y   DV V  E+   L     +  +  +  Q
Sbjct: 155 RRPL----------------PEGW---LTYAALDVEVLVEVRDVLRERLREACKEDWARQ 195

Query: 191 TINDRGYC 198
                   
Sbjct: 196 EFEHERVR 203


>gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K]
 gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 1433

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 54/178 (30%), Gaps = 32/178 (17%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDD-----HPVELW------DC 47
            +  D ET        D+ + G  K      +    F           + L       D 
Sbjct: 400 YVVFDLETTGLSPIFDDIIEFGAQKILNGKVIDTLQFFVKPNKEISEKITLITGIKNQDV 459

Query: 48  VHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
            +     + LK+ LE   D T+VAHN+ F+   +      +N      + I TLV+++  
Sbjct: 460 ENAISEKEALKKILEFMGDHTVVAHNATFDMNFINEKIEKYNFQESNLQIIDTLVVSKII 519

Query: 104 GLPS---ALKAVG----------EALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              +   +L+ +           EA +         K       K       Y  +  
Sbjct: 520 EPEAKKFSLENLASRSGIIYNSTEAHRADYDADVLAKVWNLYIQKLSDMNVKYFDDIY 577


>gi|23500370|ref|NP_699810.1| exonuclease [Brucella suis 1330]
 gi|161620685|ref|YP_001594571.1| exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|254702995|ref|ZP_05164823.1| exonuclease, RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|260568091|ref|ZP_05838560.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
 gi|23463988|gb|AAN33815.1| exonuclease, putative [Brucella suis 1330]
 gi|161337496|gb|ABX63800.1| Exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154756|gb|EEW89837.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
          Length = 224

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 73

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 74  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 130

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 131 DGARRLWRGDSTKLDHCLAKIGL 153


>gi|46201693|ref|ZP_00054536.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 230

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 41/179 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGI------------------CKYA--------EDVCVILFA 34
           M  + +D ET     L+   +                   +Y         E   V   +
Sbjct: 1   MREIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGEVFHRYCNPERDMPEEAFKVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPI 90
             F               +     E + +    +V HN+ F+       L       +P+
Sbjct: 61  VEFLSDK----PLFA--EIVADFLEFIGDA--PLVIHNAEFDMRFINAELARLGFPALPM 112

Query: 91  HRWICTLVLARSNGLP--SALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRN 146
            R I T+++AR       + L A+    ++ +  + + G  L +        + +  R 
Sbjct: 113 SRSIDTVMMARKKFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLIGGRQ 171


>gi|262045749|ref|ZP_06018713.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
 gi|260573708|gb|EEX30264.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus
           MV-3A-US]
          Length = 177

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 21/137 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------LFAFGFDDHPVELW---DC 47
           M  + +DFET +    + C +      +  ++            F   +  V      D 
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNNKIVDRFYTVINPQMPFDARNIQVHQITAEDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V    + L    + + AHN+ F+  V++     + ++ P +  I TL  ++ 
Sbjct: 61  KNAPTMAEVWPHIKELYQPGMLVAAHNARFDTNVMRQSLARYGIEEPHYLVIDTLASSKL 120

Query: 103 NG---LPSALKAVGEAL 116
                    L  V EAL
Sbjct: 121 LEPELPDHKLDTVSEAL 137


>gi|229472499|gb|ACQ72764.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 14/139 (10%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            R   I   G KLV +DLAGIE RV A   G  ++ +       +D++     +      
Sbjct: 12  CRELFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI----- 66

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                  R   K +  A  Y           ++    L       K       + DA   
Sbjct: 67  ----GISRRAVKTVTYAFLYGASDVKI---GTSYDSQLTEDQARKKGAEIRRAYPDAIPG 119

Query: 482 CRWMQENHPEHAIEDLFIG 500
              + E     A  D  + 
Sbjct: 120 LERLVEAVKTKAKVDRSLR 138


>gi|315634066|ref|ZP_07889355.1| ribonuclease D [Aggregatibacter segnis ATCC 33393]
 gi|315477316|gb|EFU68059.1| ribonuclease D [Aggregatibacter segnis ATCC 33393]
          Length = 385

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/370 (10%), Positives = 102/370 (27%), Gaps = 40/370 (10%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69
           T+S + L    +        + L    +    V L D              L +  V  V
Sbjct: 32  TQSAVALDTEFVRVRTLHPKLGLIQL-YAGDEVALIDPTMIQDF-SPFIALLADESVLKV 89

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            H    +  V +  F           T V+A   G   +             ++++G   
Sbjct: 90  LHACGEDLEVFQHYFQQL--PQPMCDTQVMANFLGFAGSAGFATLVQHYFHIEIDKGASR 147

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
                +  +                 +   Y   DV     ++ +++   ++ +    + 
Sbjct: 148 TDWLARPLS----------------EIQLRYAAADVWYLLPLYVQMQTQLAQTEWQSAVK 191

Query: 190 QTINDRGYC-----VDVALAHTLN------QIVDVERTKLDQELESLTYGLVSSSRCLEK 238
                  +       +   A+           +++ R KL  +           +     
Sbjct: 192 NECEFLLHKRAHAVKNPDTAYFAIPNAWKLNRLELMRLKLLAKWRMEEAMKRDLALNFVV 251

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298
               L+     + ++   +T   +  S  ++     ++     +  R +       ++ +
Sbjct: 252 RAENLWQVAKYNPKNT--STLLELGLSTAEVRIHGKKLLQIIDQVKRISEEDYPPPIQRL 309

Query: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358
             D R      +  A +  +       P NLP+   + +   + +        ++ +P +
Sbjct: 310 ADDSR------YKAALKALQQQLIQIAPANLPKEVIASKRHLESLMKWHWRKETEDEPPE 363

Query: 359 IISDCVRSCV 368
           ++S   R   
Sbjct: 364 LLSGW-RKPF 372


>gi|315180685|gb|ADT87599.1| ribonuclease D [Vibrio furnissii NCTC 11218]
          Length = 371

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 25/173 (14%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           FD   + L D    D + P    E L++T V  V H    +  V K  F         + 
Sbjct: 47  FDGENLSLIDPLAMDEMTP--FVELLQDTSVLKVLHACGEDIEVFKTSFG--CVPFPMVD 102

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           T ++A   G   +      A  L + ++++ +       +  +                +
Sbjct: 103 TQIMAAFLGYGLSTGFAALAHDLLNVELDKSESRTDWLARPLS----------------Q 146

Query: 156 LFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
              EY   DV        ++ +++      E      +  +  R    D  + 
Sbjct: 147 KQLEYAAADVFYLMPMYEQLLEKVTQAGWWEAAQQESELQVEKRTRTTDPEMV 199


>gi|255522480|ref|ZP_05389717.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes FSL J1-175]
          Length = 807

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 44/159 (27%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME 124
              + + T+ LAR          L+ + +   L   K  
Sbjct: 112 GKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPH 150


>gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1437

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 26/143 (18%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDHPVE--------------L 44
            +  D ET         + +    K  E   V  F+   + H                 +
Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYHIQQLTNINDEMV 480

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP--IHRWICTLVLAR 101
            D        +   + + ++   +VAHN+ F+   +     ++ +P   +  + TL LAR
Sbjct: 481 KDAPELEPKLREFIDFIGDS--ILVAHNARFDIGFIQANLKSIGMPDVTNPVLDTLELAR 538

Query: 102 SNGLP---SALKAVGEALKLSSQ 121
                     L  +    K+S  
Sbjct: 539 FLHPTMKNHRLNTLSAKYKVSLD 561


>gi|116203503|ref|XP_001227562.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
 gi|88175763|gb|EAQ83231.1| hypothetical protein CHGG_09635 [Chaetomium globosum CBS 148.51]
          Length = 827

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 43/180 (23%), Gaps = 35/180 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL---WDCVHDPVMPQVLKE 59
            + ID E              Y     + L      +    +       H     +VL E
Sbjct: 248 EIAIDLE--------HHDFRSYTGL--LSLMQISTREKDWIIDTLVPWRHK---LEVLNE 294

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
              +  +  V H ++ +   L+      + +     T   + +       K++   LK  
Sbjct: 295 VFADPKIVKVLHGAFMDIIWLQRDLG--LYVVGLFDTFYASTALQYAG--KSLAFLLKKF 350

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                +         K         R  P           Y + D      I+  L    
Sbjct: 351 VDFDAD---------KKYQLADWRLRPLP------EEMFYYARSDTHFLLYIYDMLRNEL 395


>gi|330838686|ref|YP_004413266.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
           ATCC 35185]
 gi|329746450|gb|AEB99806.1| Exonuclease RNase T and DNA polymerase III [Selenomonas sputigena
           ATCC 35185]
          Length = 186

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 27/143 (18%)

Query: 1   MATLFIDFET-RSPIDLTKCGICKYAEDVCV-----ILF---AFGFDD--------HPVE 43
           M  + IDFET    ++           D  +      L       FD          P +
Sbjct: 2   MNYIAIDFETATGSMNSACSVATVEVRDGQLKEGWTTLIQPPGLRFDSFNIGIHGISPKD 61

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI---CTLVLA 100
           + D      + + LKE L      +VAHN+ F+  VLKA    +     +    CT+ +A
Sbjct: 62  VTDAPTFAEVWEELKERLA--GKIVVAHNASFDMGVLKASLLANRLQAPYFRTCCTVRIA 119

Query: 101 R----SNGLPSALKAVGEALKLS 119
           R    +      L  VG  L ++
Sbjct: 120 RKVWPALD-DHKLNTVGAHLNIN 141


>gi|262212133|gb|ACY35683.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEVRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|260887789|ref|ZP_05899052.1| exonuclease [Selenomonas sputigena ATCC 35185]
 gi|260862465|gb|EEX76965.1| exonuclease [Selenomonas sputigena ATCC 35185]
          Length = 202

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 27/143 (18%)

Query: 1   MATLFIDFET-RSPIDLTKCGICKYAEDVCV-----ILF---AFGFDD--------HPVE 43
           M  + IDFET    ++           D  +      L       FD          P +
Sbjct: 18  MNYIAIDFETATGSMNSACSVATVEVRDGQLKEGWTTLIQPPGLRFDSFNIGIHGISPKD 77

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI---CTLVLA 100
           + D      + + LKE L      +VAHN+ F+  VLKA    +     +    CT+ +A
Sbjct: 78  VTDAPTFAEVWEELKERLA--GKIVVAHNASFDMGVLKASLLANRLQAPYFRTCCTVRIA 135

Query: 101 R----SNGLPSALKAVGEALKLS 119
           R    +      L  VG  L ++
Sbjct: 136 RKVWPALD-DHKLNTVGAHLNIN 157


>gi|256059183|ref|ZP_05449390.1| DNA polymerase III, epsilon chain [Brucella neotomae 5K33]
          Length = 224

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 73

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+    + CT+
Sbjct: 74  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPFYCTM 130

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 131 DGARRLWRGDSTKLDHCLAKIGL 153


>gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1430

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 26/141 (18%)

Query: 3   TLFIDFETRSPID-----LTKCGICKYAEDVCVI-----------LFAFGFDDHPVELWD 46
            +  D ET          +   G+    +D  +I             +    +      D
Sbjct: 410 YVVFDVETTGLSAVYNKIIELAGVK--IKDGEIIDRFEAFADPKHALSATTIELTGITDD 467

Query: 47  CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
            V     P+V+ +   +   D  +VAHN+ F+   L+        +   +  I TL LAR
Sbjct: 468 MVQGQPDPEVITKRFVDWCGDSILVAHNASFDMGFLEATLRSGGHEPDDYPVIDTLELAR 527

Query: 102 SNGLP---SALKAVGEALKLS 119
           +         L  + +   + 
Sbjct: 528 TLMPTLKNHRLNTLAKRFDIE 548


>gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 1479

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 53/202 (26%), Gaps = 51/202 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFA---FGFDDHPVELWDCVHDPVMPQVLK 58
             +F D ET               E   +I F    + F     +  D +  P     LK
Sbjct: 431 KMVFFDLETTGLSP----------ELDEIIEFGAIEYNFKTGERKKIDILIKPK--SKLK 478

Query: 59  EA-----------LENT---------------DVTIVAHNSYFERTVLKAC---FNLDIP 89
           +            LEN                D  +VAHN+ F+ T L            
Sbjct: 479 DFTKKLTNINEEMLENKPGIEVAFKEINQVIKDAILVAHNANFDYTFLSHWSEKLGYGKL 538

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQKME----EGKELIARFCKGETHECL 142
            +  I TL ++R          L ++ + + +S         +    I         +  
Sbjct: 539 ENTIIDTLTISRIIYPELKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDDT 598

Query: 143 YDRNKPNHREAWRLFGEYCKGD 164
             + K      W         D
Sbjct: 599 RKKTKITIDSDWDKINPLNNID 620


>gi|119026003|ref|YP_909848.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765587|dbj|BAF39766.1| putative DNA polymerase III epsilon subunit [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 207

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 42/136 (30%), Gaps = 25/136 (18%)

Query: 6   IDFETRSPID----------LTKCGICKYAEDVCVILFAF--GFDDHPVELW---DCVHD 50
           +DFET               L         ED    L           V      + +H 
Sbjct: 9   VDFETTGLSPAKGDRAIEIGLVHVAPDGTLEDEHETLIHVDRSVGASWVHHITARELLHA 68

Query: 51  PV---MPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHR--WICTLVLARS 102
           P    +   L++ L       VAHN  F+   L A        IP+ +   +CT+ L+RS
Sbjct: 69  PDFEGIAHELRDLLA--GRVFVAHNVSFDSRFLLAEYSRMGASIPVDQSTMLCTMKLSRS 126

Query: 103 NGLPSALKAVGEALKL 118
                 L    E   +
Sbjct: 127 LIGRGKLADCCEYFGI 142


>gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
 gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
           vestfoldensis SKA53]
          Length = 469

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 69  VAHNSYFERTVLKACF-NLDIPI-HRWICTLVLARSNG---LPSALKAVGEALKLS 119
           VAHN+ F+ +        + +   H  + T++L+           L  + + L + 
Sbjct: 360 VAHNAPFDLSFFHRYAPKIGMKFDHPVLDTVLLSAVLFGITEGHTLDELAKRLGIE 415


>gi|256043519|ref|ZP_05446446.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 224

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPID---LTKCGICKYAEDVCVILFAF------------------GFDDH 40
             +  D ET   +    +   G  K  E   ++  +                   GFD+ 
Sbjct: 15  RVIVFDTETTGILPYDRIITLGAVK-IEGGELLTQSLYLIFDPRKDSSPQAEAVHGFDNW 73

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTL 97
                D  H   +   +++     D  +VAHN+ F+   ++  F    +D+      CT+
Sbjct: 74  MTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDMHYIQREFRKAEVDMLDQPVYCTM 130

Query: 98  VLARSN--GLPSALKAVGEALKL 118
             AR    G  + L      + L
Sbjct: 131 DGARRLWRGDSTKLDHCLAKIGL 153


>gi|262212171|gb|ACY35702.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + + +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVETVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|27383129|ref|NP_774658.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27356303|dbj|BAC53283.1| blr8018 [Bradyrhizobium japonicum USDA 110]
          Length = 298

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 20/103 (19%)

Query: 4   LFIDFETRSPI----DLTKCGICK--YAEDVCVILF--AFGFDDHPVELWD--------- 46
           + +D ET        ++ + G+ K  Y  D  ++     F   D P              
Sbjct: 45  ILLDTETTGLDHRKDEIIELGMVKFDYTPDGRIVGVRDTFAAFDEPSAPIPPEITAITGI 104

Query: 47  ---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
               V    +      A  +  V  +AHNS F+R   +  + +
Sbjct: 105 TDEMVAGQRIDDAAVSAFVDDAVITIAHNSGFDRKFAERYWPV 147


>gi|117619304|ref|YP_856106.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 244

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 42/167 (25%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFG---------------------FDDH 40
             + +D ET     +   G   Y     +I                           D  
Sbjct: 8   RQIILDTETTG---MNTAGGPVYLGH-RIIEIGCVEVINRKLTGNHFHVYIKPDRLVDPE 63

Query: 41  PVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN------L 86
            +++     +          +     E +      ++AHN+ F+ + +   F        
Sbjct: 64  AIQVHGITDEFLRDKPSFSQIADEFIEFIR--GAELIAHNAPFDVSFMDYEFGKLGLNFK 121

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              I     TL +AR         L  + +   + +        L+ 
Sbjct: 122 TADICGITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLD 168


>gi|195579078|ref|XP_002079389.1| GD22040 [Drosophila simulans]
 gi|194191398|gb|EDX04974.1| GD22040 [Drosophila simulans]
          Length = 1078

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 78/308 (25%), Gaps = 53/308 (17%)

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVT 411
              +   +RS V A  G +LV AD+   E  + +     +  GE               +
Sbjct: 733 PDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGWMTLSGSKS 792

Query: 412 TYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
             +   ++  A+     R   KV+  A  Y  G    + +        +      K    
Sbjct: 793 NGSDMHSI-TAKAVGISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEAKAKA--- 848

Query: 472 PEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQT 531
                  + F     +                  V + + + +            A    
Sbjct: 849 ------IKMFSITKGKQVYSSYEASRLAIQRNRTVAEVFHRPN-----WQGGTESAMFNR 897

Query: 532 IENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREY 591
           +E    I    +   P +  +  +       P                            
Sbjct: 898 LE---EIATGSQPRTPFLGGRLSRALEADTGPDQEQRFLP-------------------- 934

Query: 592 TYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNAS--- 645
                    +VQ+ + D   ++   M     +     L+ HDE+     +     A+   
Sbjct: 935 ----TRINWVVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAM 990

Query: 646 MLYHLMTS 653
            + +LMT 
Sbjct: 991 HITNLMTR 998


>gi|229472505|gb|ACQ72767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|83645320|ref|YP_433755.1| DNA polymerase III subunit epsilon [Hahella chejuensis KCTC 2396]
 gi|83633363|gb|ABC29330.1| DNA polymerase III, epsilon subunit [Hahella chejuensis KCTC 2396]
          Length = 240

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 43/155 (27%)

Query: 1   MATLFIDFETRS------------------PIDLTKCGICKY--------AEDVCVILFA 34
           M  + +D ET                       LT      Y        A    V   +
Sbjct: 1   MRQIVLDTETTGLETSQGHRIIEIGCVEVIDRSLTGNHYHVYINPEREVDAGAFEVHGIS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFNLD 87
               +    L D      + Q   + +  +   +V HN+ F+          L A F   
Sbjct: 61  ----NE--FLADKPKFKQVAQDFLDFI--SGAELVIHNAAFDVGFIDYEFSLLGAPFGKV 112

Query: 88  IPIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
                 + TL++AR         L A+ +   + +
Sbjct: 113 SDYCSVVDTLMMARKKHPGQKNNLDALCKRYGIDN 147


>gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
 gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
          Length = 1449

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 11/119 (9%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL 105
            +  + ++ +E   +    +VAHN+ F+   L      + +    +  I TL LAR    
Sbjct: 487 SEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLELARYLYP 544

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                   +   L     + G  L          E          +EA          D
Sbjct: 545 EF------KRFGLGVLSKKFGVSLEQHHRAIYDAEATGHLAWIFVKEAMEKHDMLLHED 597


>gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 1012

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 84/261 (32%), Gaps = 53/261 (20%)

Query: 6   IDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH---PVELWDCV-------HDP 51
            D ET         +T+ G  K    + V  F+   +     P  + D          + 
Sbjct: 3   FDIETTGLSSRNDKITEIGAVKIKNGMIVDRFSQLINPEKEIPQVVVDLTGISNAMVENE 62

Query: 52  VMPQVLKEALEN--TDVTIVAHNSYFERTVLKA-CFNLDIPIH-RWICTLVLARSNGLPS 107
              + +     +   D  +VAHN+ F+ + ++    N ++  +   + TLVLAR+     
Sbjct: 63  PTIEEVILKFYDFAKDAVLVAHNAKFDISFIRREYANNNLVFNHPILDTLVLARA----- 117

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            +  + +   L +     G  L+                                 D   
Sbjct: 118 TMSDM-KRFNLGTLCKNLGVSLVGAHR--------------------------AVNDAEA 150

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL-T 226
           T E+F +L     +E+E  +  + +N     +D       + ++ V+     + L  L +
Sbjct: 151 TAEVFIKLIEKIKREEEFNF--ENLNKEIVNIDSKRLFESSLLLLVQNEIGLKNLYMLIS 208

Query: 227 YGLVSSSRCLEKLKTWLFLET 247
              +     + K+   L  + 
Sbjct: 209 DSHMKYFNFVAKVPRSLLDKY 229


>gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 658

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 16/97 (16%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NL 86
           D  PV +     +          + Q + + LE     +VAHN+ F+   L   F    +
Sbjct: 64  DPGPVHVHGLTAERLHGAPAFEEVAQRISQMLE--GRVLVAHNAQFDYDFLAHEFARAGV 121

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKLSS 120
            +P+ R +CTL L R    P     L  +     +  
Sbjct: 122 SLPVARRLCTLALNRRVDPPTQDLRLGTLAAHYGVPQ 158


>gi|257897430|ref|ZP_05677083.1| DNA polymerase subunit III [Enterococcus faecium Com12]
 gi|257833995|gb|EEV60416.1| DNA polymerase subunit III [Enterococcus faecium Com12]
          Length = 291

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 55/168 (32%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA- 60
             + IDFET     L          D  ++          ++         + Q +K   
Sbjct: 123 DYVVIDFETTGLSPL----------DSEILQI------GAIKYESNEEIDRIYQNIKPFR 166

Query: 61  --------------LEN------------------TDVTIVAHNSYFERTVLKACF---N 85
                         LE+                  +  T+VAHN+ F+   L       N
Sbjct: 167 SNISKRITKITGLELEDVVNMPTFEDFSPQLMSFISCYTLVAHNAPFDLKFLLHQLNENN 226

Query: 86  LDIPI-HRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELI 130
           +++    R I TL LAR +       L  + + L L +   +  ++ +
Sbjct: 227 IELNQRIRVIDTLPLARRHFETPNHKLITLKDYLNLDNNSHDALEDCL 274


>gi|289740869|gb|ADD19182.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 568

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 58/213 (27%), Gaps = 55/213 (25%)

Query: 2   ATLFIDFE--TRSPID-----LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP 54
             L  D E  T S        L  C    Y     +                      +P
Sbjct: 78  KVLGFDCEWVTVSGSRRPVALLQLCSNRGYCALFRLCCI-----------------RQIP 120

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC-----TLVLARSNGLPSAL 109
           + L++ L + +V  V  +  ++   L   + + +            T+V           
Sbjct: 121 KSLRDLLADEEVIKVGVDPGYDAQKLAQDYGVGV--ASTFDLRYLATMV-------GRKP 171

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           + + + L LS  K+   K      C     + L ++             EY   D  V  
Sbjct: 172 EGLAK-LSLSVLKVTLDKHW-RLSCSNWEAKDLTEKQI-----------EYAANDAFVAV 218

Query: 170 EIFKR----LEPLSSKEQELWYLDQTINDRGYC 198
           EIFK      +P  S   +   +   I      
Sbjct: 219 EIFKILAREFKPRLSWLSDFTIIKCRIEPFLEM 251


>gi|262342227|gb|ACY54624.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
            +R   I + G+ +V ADLAGIE R+L+          A        V       +   A
Sbjct: 11  RLRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYAVILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + + +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVRTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|262212411|gb|ACY35822.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 68/269 (25%), Gaps = 96/269 (35%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A+ G+ +VVADL+GIE R+LA                       A    ++    
Sbjct: 13  RRLFMATPGQVMVVADLSGIELRMLAHYLARYDTYFGDNLLNGDIHQINADKIGIS---- 68

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G +       +    L+                        
Sbjct: 69  ----RKLVKTVCYAFLYGAGLEKI---GYSYDRLLSPQKAKA------------------ 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                +K+A+ +    +SEL   +  A                 
Sbjct: 104 -----------------KGREIKEAFIEAIPGLSELLGAVKSAA---------------- 130

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                      N   +    GR ++        +Y                     ++Q 
Sbjct: 131 -----------NRGFVKGIDGRKILVDSPHKALNY---------------------LLQG 158

Query: 605 VSRDILAEGMMNATKAGY--DIVLTVHDE 631
            +  I    M+ A    Y    +  +HDE
Sbjct: 159 SAGVIAKRWMVIAHDNNYCASQLAFIHDE 187


>gi|262212225|gb|ACY35729.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGIPRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|262212057|gb|ACY35645.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212063|gb|ACY35648.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212099|gb|ACY35666.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212105|gb|ACY35669.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +           +        +   A  E  D  +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 483 RWMQENHPEHAIEDLFIGTA 502
               +   E        G  
Sbjct: 124 LEAIKKASERGFIKALDGRK 143


>gi|260598272|ref|YP_003210843.1| ribonuclease D [Cronobacter turicensis z3032]
 gi|260217449|emb|CBA31565.1| Ribonuclease D [Cronobacter turicensis z3032]
          Length = 409

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 71/258 (27%), Gaps = 46/258 (17%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQ 55
             L +D E     T                   + L    +D   V L D        P 
Sbjct: 59  RALALDTEFVRTRTYY---------------PQLGLIQL-YDGENVALIDPLTITEWAP- 101

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +  L++ ++T   H    +  V +  F   +    +I T VLA   G P +       
Sbjct: 102 -FQALLQDQNITKFLHAGSEDLEVFQNAFG--MMPDPFIDTQVLASFVGHPLSCGFATLV 158

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREI 171
              +   +++ +       +  T                    +Y   DV     +  ++
Sbjct: 159 EHHTGVALDKSESRTDWLARPLT----------------ERQCDYAAADVWYLLPIAHKL 202

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            +++         +         RG  +D   A          R +    L+ L    + 
Sbjct: 203 MEQVREAGWLTAAINECRLMTQRRGEVLDPDEAWREITNAWQLRPRQLACLKLLAGWRLR 262

Query: 232 SSRCLEKLKTWLFLETGL 249
            +R  +    ++  E  L
Sbjct: 263 KARERDMAVNFVVREENL 280


>gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 318

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 69/258 (26%), Gaps = 39/258 (15%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIA-----RFCKGETHECLYDRNKPNHRE 152
                +     L+ +   L +         + I      + C     E     NK     
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASIEEEGKRKVNK----V 185

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                  Y    V       KR            YLD         V V         + 
Sbjct: 186 MLDETAVYEA--VKEILACNKRNVEWLRCMNVGSYLDIKAFYPVMRVKVKGRKKYV--LT 241

Query: 213 VERTKLDQELESLTYGLV 230
               +  +E+ +      
Sbjct: 242 EILEEDVKEICTSLKCEP 259


>gi|56475526|ref|YP_157115.1| exonuclease [Aromatoleum aromaticum EbN1]
 gi|56311569|emb|CAI06214.1| conserved hypothetical protein, possibly exonuclease [Aromatoleum
           aromaticum EbN1]
          Length = 642

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 26/138 (18%)

Query: 6   IDFETRSPID-----LTKCGICKYAEDVCVILFAF--------GFDDHPVELW----DCV 48
            D ET          + + G  +      +   +F        G     V++     D +
Sbjct: 455 FDTETTGLDPSKGDEIIQIGATRIVNSKLLRQESFEQLIDPERGVSPESVKIHGITPDML 514

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSN 103
                   +  A      D  ++AHN+ F+   L   +    L       + TL+L+   
Sbjct: 515 AGQPTIARVLPAFHAFAQDTVLIAHNAAFDMRFLQLKETMTGLRFD-QPVLDTLLLSAVV 573

Query: 104 GL---PSALKAVGEALKL 118
                   L+A+ E L L
Sbjct: 574 HPNQESHRLEAIAERLNL 591


>gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11]
 gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11]
          Length = 471

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 39/145 (26%)

Query: 6   IDFETRSP----IDLTKCGICKYA----------------------EDVCVILFAFGFDD 39
            D ET        D+ + G  +                            V   +     
Sbjct: 282 FDTETTGLMPNKDDIVQIGAVRVVNGRMVPGERIDQLVNPGRPIPPASSKVHGIS----- 336

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-DIP-IHRWICTL 97
               + D            E      V  VAHN+ F+   L+    +  +   H  + T+
Sbjct: 337 -DTMVADAPQPLEAVADFHE-FARESVI-VAHNAPFDLAFLQKYGKVAGLEWPHPILDTV 393

Query: 98  VLARSN---GLPSALKAVGEALKLS 119
           +L+           L A+ E L + 
Sbjct: 394 LLSAVVFGSNEVHTLDALCERLCID 418


>gi|262342257|gb|ACY54639.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
 gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
          Length = 1439

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL- 105
           +  +    +E + +     VAHN+ F+   +         +   +  I TL ++R     
Sbjct: 488 EKEVISDFREWVGDA--IFVAHNASFDMGFIDTAYNRHGFEKSHNAVIDTLEMSRFLHPN 545

Query: 106 --PSALKAVGEALKL 118
                L  + +   +
Sbjct: 546 LKSHRLNTLAKRYNV 560


>gi|262212139|gb|ACY35686.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212161|gb|ACY35697.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180]
 gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM
           180]
          Length = 240

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 43/164 (26%), Gaps = 38/164 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-----------------AFGFDDHPVE 43
           M  + +D ET            +  E  CV L                      +   V 
Sbjct: 1   MRQIVLDTETTGLEPREG---HRIIEIGCVELVDRRPTGRNFHEYLNPERQIDAEAEAVH 57

Query: 44  LWDCVHDPVMP------QVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IP 89
                     P      + L E L      ++ HN+ F+   L   F L           
Sbjct: 58  GISNAFLADKPRFAERAERLVEYLR--GAELIIHNAAFDVGFLDHEFGLWRGAEAPRIAD 115

Query: 90  IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           +     +L++AR         L A+ +   + +        L+ 
Sbjct: 116 LCTVTDSLLMARKLHPGQRNGLDALCKRYAIDNSHRTLHGALLD 159


>gi|190573031|ref|YP_001970876.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
           K279a]
 gi|190010953|emb|CAQ44562.1| putative DNA polymerase III, epsilon chain [Stenotrophomonas
           maltophilia K279a]
          Length = 243

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 39/155 (25%), Gaps = 43/155 (27%)

Query: 1   MATLFIDFETRSP-----IDLTKCG-------------------ICKYAEDV--CVILFA 34
           M  + +D ET          + + G                        E     V    
Sbjct: 1   MRQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLD 87
             F D      D      +       +      ++ HN+ F+   L          +   
Sbjct: 61  LEFLD------DKPEFAQIADEFLAFI--DGAELIIHNAAFDLGFLDNELSLLGPQYGKI 112

Query: 88  IPIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
                 I TL +AR        +L A+ + L + +
Sbjct: 113 TDRCTVIDTLAMARERFPGQRNSLDALCKRLGVDN 147


>gi|145589210|ref|YP_001155807.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047616|gb|ABP34243.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 236

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 55/183 (30%), Gaps = 30/183 (16%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDD-H 40
           M  + +D ET                       LT      Y   +  +   AF      
Sbjct: 1   MRQVILDTETTGLNPATGDRVIEIGCVEVIDRRLTDRTFHYYINPERDIDAGAFAVHGLS 60

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI------HRWI 94
              L D      + + L E ++  ++  V HN+ F+   L   F L           + I
Sbjct: 61  REFLSDKPVFGNIAEQLIEFVDGAEI--VIHNAAFDLGFLDNEFALLKRPPFRGLASKVI 118

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL+ AR        +L A+ E   +S++       L+      E +  +    +    +
Sbjct: 119 DTLLDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYIAMTRGQEDLSID 178

Query: 153 AWR 155
              
Sbjct: 179 LID 181


>gi|78358642|ref|YP_390091.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78221047|gb|ABB40396.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 986

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 21/169 (12%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDPVMPQVLKEALENT 64
           +D ETR                   +  +     D   + +       +P++L    E  
Sbjct: 810 LDVETR-----RSAQEAGGWHKAHAMGVSVAVLYDSRTDAFTAYTQDNVPEMLLRLAEFD 864

Query: 65  DVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
              ++  N   F+  VL      D P                   L  + E  K  S ++
Sbjct: 865 --LVIGFNIIRFDYKVLAPLLPPDTP-----------WRLDALPTLDMLDEVKKCLSYRI 911

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                L +                   +        YC+ DV +TR+++
Sbjct: 912 SL-DNLASATLDAPKSADGLQALAWWKQGRIDEIAAYCEQDVRITRDLY 959


>gi|53718980|ref|YP_107966.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           K96243]
 gi|53725133|ref|YP_102525.1| DNA polymerase III subunit epsilon [Burkholderia mallei ATCC 23344]
 gi|126449393|ref|YP_001080124.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10247]
 gi|167719045|ref|ZP_02402281.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei DM98]
 gi|167738046|ref|ZP_02410820.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 14]
 gi|167815230|ref|ZP_02446910.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 91]
 gi|167823638|ref|ZP_02455109.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 9]
 gi|167845182|ref|ZP_02470690.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           B7210]
 gi|167893733|ref|ZP_02481135.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 7894]
 gi|167902185|ref|ZP_02489390.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei NCTC
           13177]
 gi|167910426|ref|ZP_02497517.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 112]
 gi|167918451|ref|ZP_02505542.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
           BCC215]
 gi|254188362|ref|ZP_04894873.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|52209394|emb|CAH35339.1| DNA polymerase III, epsilon chain [Burkholderia pseudomallei
           K96243]
 gi|52428556|gb|AAU49149.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
           23344]
 gi|126242263|gb|ABO05356.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
           10247]
 gi|157936041|gb|EDO91711.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 240

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 36/190 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTG---LNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-----IH 91
               E   D      +   L++ + + ++ I  HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLSDKPKFAEIVDPLRDFVRDAELII--HNAPFDLGFLDAEFALLGLPSFTDHCA 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TLV A+        +L A+ +   +S+        L+      E +  +    +  
Sbjct: 116 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESL 175

Query: 150 HREAWRLFGE 159
             +     G+
Sbjct: 176 VIDMLDEAGD 185


>gi|312210218|emb|CBX90305.1| hypothetical protein [Leptosphaeria maculans]
          Length = 799

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 49/188 (26%), Gaps = 34/188 (18%)

Query: 2   ATLFIDFETRSPIDL-----TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L  D E   P  +         + + A +  + LF     +          + +MP  
Sbjct: 249 KVLGFDIE-WKPFGIPSSIKQNVSLIQLACEDRIALFHISLFEGTAV------EELMPPS 301

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL----------- 105
           LK  LE+ D+  V      + + L     +            L+R + L           
Sbjct: 302 LKAVLESPDIYKVGVAIKGDFSRLARYLGI--QARGVF---ELSRLHNLVQYYEADPKQV 356

Query: 106 PSALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
            + L  +  +  +     + +G+ L               R              Y   D
Sbjct: 357 NNRLVGLAAQVHQHLQLPLYKGEPLDDD-----PETSSSVRESDWSLPLGFSQIHYAAAD 411

Query: 165 VTVTREIF 172
                 ++
Sbjct: 412 AYAGFRLY 419


>gi|16125948|ref|NP_420512.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|221234713|ref|YP_002517149.1| ribonuclease D [Caulobacter crescentus NA1000]
 gi|13423116|gb|AAK23680.1| ribonuclease D [Caulobacter crescentus CB15]
 gi|220963885|gb|ACL95241.1| ribonuclease D [Caulobacter crescentus NA1000]
          Length = 389

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/274 (9%), Positives = 69/274 (25%), Gaps = 47/274 (17%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L           + D + D +  + L 
Sbjct: 23  VAVDTEFMRETTYW---------------PKLCLIQVASPTQEA-VIDPLADNIDLEPLL 66

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             + +  +  V H +  +  +      L         T V             +      
Sbjct: 67  VVMRDERILKVFHAARQDVEIFNN---LKAMPKPLFDTQVA-----------GMAAGFGE 112

Query: 119 SSQKMEEGKELIA-RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                   ++++     K         R   + +        Y   DVT   ++F  L  
Sbjct: 113 QIAYDALVRQMLRIEIDKSSRFTDWARRPLTDAQ------LSYALADVTHLAKLFPILRE 166

Query: 178 LSSKEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                  L ++++ +          VD   A    +       K     +++      ++
Sbjct: 167 RLETSGRLAWVEEEMTAISDPAAYDVDPEKAWRRLRP-RKTAPKYLAVFKAVAAWRERTA 225

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
           +  ++ +  +  +  +             L++ +
Sbjct: 226 QNRDQPRGRILKDEAIDELATQTPGNLEALNNLR 259


>gi|262342225|gb|ACY54623.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|262342207|gb|ACY54614.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|168207510|ref|ZP_02633515.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170661145|gb|EDT13828.1| putative DNA polymerase III, epsilon subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 204

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 27/122 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV-----CVIL--FAFGFDD--HPVELWDCVHDP 51
           M  LF D ET      + C +     D        I     F  D+     E        
Sbjct: 1   MKLLFFDTETTGVKPGSICQLSYILVDTSTKPQKTIGKNIFFTVDEMEPEAERIHGFSLE 60

Query: 52  VMPQ-------------VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWIC 95
            + +              + + LE   +  + HN  F+   LK            +   C
Sbjct: 61  KLYELSEGMYFEDLYANFINDFLEADFI--IGHNVQFDIKFLKHELLGLGEFFEPNNVFC 118

Query: 96  TL 97
           T+
Sbjct: 119 TM 120


>gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Staphylococcus pseudintermedius ED99]
          Length = 1435

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +    K  + +     VAHN+ F+   +             +  I TL L+R+
Sbjct: 481 DAPEIEEVLTEFKAWVGDA--IFVAHNASFDMGFIDTGYERLGFGPSANAVIDTLELSRT 538

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 539 INTSYGKHGLNFLAKKYGVE 558


>gi|262212217|gb|ACY35725.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 10/152 (6%)

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
                    R   I + G+ +V ADLAGIE R+L+          A              
Sbjct: 4   AQGPSDHRFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNG 56

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
             +   A      R + K +  A  Y  G +       +    L++ A   K     + +
Sbjct: 57  DIHQVNADKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAY 113

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
            +A +    + E   + +           ++ 
Sbjct: 114 IEAIDGLDKLLEAIKKASERGFIKALDGRKII 145


>gi|262212183|gb|ACY35708.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +           +        +   A  E  D  +  
Sbjct: 64  DKIGISRKLVKAVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 483 RWMQENHPEHAIEDLFIGTA 502
               +   E        G  
Sbjct: 124 LEAIKKASERGFIKALDGRK 143


>gi|262212135|gb|ACY35684.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342221|gb|ACY54621.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|261868337|ref|YP_003256259.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413669|gb|ACX83040.1| ribonuclease D [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 385

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/214 (8%), Positives = 53/214 (24%), Gaps = 40/214 (18%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L    F D    +         P    + L +T++  + H    +  V +  F   
Sbjct: 50  PKLGLIQMYFGDRVALIDPLPIQDFSP--FIKLLADTNLVKILHACSEDLDVFQHYFQQL 107

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                   T V+A   G   +             ++++G        +  +         
Sbjct: 108 --PRPMCDTQVMAHFLGFAGSTGFATLVQHYFQIEIDKGASRTDWLARPLSDTQ------ 159

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND------------- 194
                      +Y   DV     ++++++   ++ +    ++                  
Sbjct: 160 ----------LQYAAADVWYLLPLYEQMQQQLTQTEWQSVVENECEFLLNKRAQTTKDPD 209

Query: 195 -------RGYCVDVALAHTLNQIVDVERTKLDQE 221
                    + ++      L  +      +  + 
Sbjct: 210 SAYFAIPNAWKLNRLELMRLKLLAKWRMEEAMKR 243


>gi|229472281|gb|ACQ72655.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212143|gb|ACY35688.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212169|gb|ACY35701.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212175|gb|ACY35704.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212179|gb|ACY35706.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212233|gb|ACY35733.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212337|gb|ACY35785.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342211|gb|ACY54616.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342215|gb|ACY54618.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342217|gb|ACY54619.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342223|gb|ACY54622.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342231|gb|ACY54626.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342253|gb|ACY54637.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342255|gb|ACY54638.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|332993503|gb|AEF03558.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 30/149 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY----AEDVCVIL--FAFGFDDH---PVELWDCVHD- 50
           M  + +D ET          + +       +  +    F    +       E  D  H  
Sbjct: 1   MRQIVLDTETTGIDPKEGHRVIEIGCVELVNRKLTGNHFHVYINPGRQIEQEAIDV-HGI 59

Query: 51  --PVMPQV--LKEALEN-----TDVTIVAHNSYFERTVLKACFNLDIPIHRWI------- 94
               +      ++  E+         +V HN+ F+   +   F ++      I       
Sbjct: 60  TNEFLTDKPTFRDVAEDFVNFIRGAQLVIHNAPFDVGFMDHEFGMEPKTRGVITKDICSV 119

Query: 95  -CTLVLARSNGLPS--ALKAVGEALKLSS 120
             TL +AR         L A+ +   + +
Sbjct: 120 LDTLAVARKMHPGQKNNLDALCKRYGIDN 148


>gi|262342229|gb|ACY54625.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|238759160|ref|ZP_04620328.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236]
 gi|238702576|gb|EEP95125.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236]
          Length = 259

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 65/247 (26%), Gaps = 69/247 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 12  RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVINRRLTGRNFHVYVKPDRLVDP 65

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDI 88
                  + D  +    K +  +             +V HN+ F+   +         DI
Sbjct: 66  EAYGVHGISDEFLAD--KPSFADITPEFLEFIRGAELVIHNAAFDIGFMDYEFRMLQQDI 123

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
           P     CT    L+LAR         L A+ +   + + K      L+      E +  +
Sbjct: 124 PKTETFCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAM 183

Query: 143 ------------YDRNKPNHREAWRLFGE--------YCKGDVTVTR--EIFKRLEPLSS 180
                        D+++ +  E  +            Y   D  +     +   ++   S
Sbjct: 184 TGGQTSLSFSMEGDQSQNDSSEDIQRITRPASALKIIYAAEDELLAHESRLDLVMKKGGS 243

Query: 181 KEQELWY 187
               +  
Sbjct: 244 CLWRMPL 250


>gi|224476950|ref|YP_002634556.1| hypothetical protein Sca_1466 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421557|emb|CAL28371.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 185

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 27/139 (19%)

Query: 4   LFIDFETR-------SPIDLTKCGICKYAEDVCVIL-----FA------FGFDDHPVELW 45
           + +DFET          + + K    +  E    ++     F+       G     V   
Sbjct: 8   VALDFETANGKRTSICSVGMVKVVDNEIVETFYTLVNPNDYFSQQNINVHGIQPEDVATA 67

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR- 101
              +   +   + + +EN  + +VAHN+ F+ TVL        LD P   + C+L LAR 
Sbjct: 68  PVFN--FVLPYMLQFIEN--LPVVAHNAAFDMTVLHASIQALGLDTPEMTYFCSLQLARR 123

Query: 102 -SNGLPSALKAVGEALKLS 119
             N     L  + E   L 
Sbjct: 124 TVNANRYGLNHMMEYYHLD 142


>gi|332559710|ref|ZP_08414032.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N]
 gi|332277422|gb|EGJ22737.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides WS8N]
          Length = 229

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 50/178 (28%), Gaps = 33/178 (18%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  + +D ET            +  E   V LF                +  MP    E 
Sbjct: 1   MREIVLDTETTGFEPSEG---HRIVEIGAVELFNH-MPTGRTYHQYINPERPMPNEAFEV 56

Query: 61  -------LENT---------------DVTIVAHNSYFERTVLKACFNL----DIPIHRWI 94
                  L +                +  +V HN+ F+   L           +   + +
Sbjct: 57  HGLGDEFLRDKPVFAAIGRAFLDFVGEARLVIHNAVFDMKFLNFELGRAGLPRLAPDQAL 116

Query: 95  CTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPN 149
            TL LA  R  G P+ L A+     + +  + + G  L +        E +  R    
Sbjct: 117 DTLALARQRFPGAPATLDALCRRFGVDNSAREKHGALLDSEILAEVYLELIGGRQPDF 174


>gi|262342213|gb|ACY54617.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKAVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|262212221|gb|ACY35727.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKVGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|262212155|gb|ACY35694.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|262212079|gb|ACY35656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212083|gb|ACY35658.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1]
 gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga
           petrophila RKU-1]
 gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 1367

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL- 105
             +       LEN+   IVAHN+ F+   L    K    LD     +I TL LA+S    
Sbjct: 424 EEVLPEFLGFLENS--IIVAHNANFDYRFLRLWIKKVMGLDWE-RPYIDTLALAKSLLKM 480

Query: 106 -PSALKAVGEALKLSS 120
              +L +V E L L  
Sbjct: 481 RSYSLDSVVEKLGLGP 496


>gi|262342237|gb|ACY54629.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 193

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 12  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 64

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +           +        +   A  E  D  +  
Sbjct: 65  DKIGISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDKL 124

Query: 483 RWMQENHPEHAIEDLFIGTA 502
               +   E        G  
Sbjct: 125 LEAIKKASERGFIKALDGRK 144


>gi|293334443|ref|NP_001170525.1| hypothetical protein LOC100384536 [Zea mays]
 gi|238005848|gb|ACR33959.1| unknown [Zea mays]
          Length = 666

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 56/236 (23%), Gaps = 32/236 (13%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L+E  ++     V H +  +   L+   +  I +     T   +R   +           
Sbjct: 216 LQEPFKDPTKRKVMHGADRDIMWLQR--DFHIYVCNLFDTGQASRVLQMERN-------- 265

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + L+  FC     +   + +  +         +Y + D      I+  + 
Sbjct: 266 --------SLEHLLLHFCGVTAKKEYQNADWRSRPLP-DEMIKYAREDTHYLLYIYDLMR 316

Query: 177 PL------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                             +    +     ++    D +  H           +    + +
Sbjct: 317 QRLQRESTFENDLLLEVHKRSNEICLQFYEKELLTDTSYLHIYGLQEHELDARQLAVVAA 376

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN-KKLTPQAIQVFNN 279
           L       +R  ++   ++     L        T    L    K   P        
Sbjct: 377 LHEWRDRIARQEDESTGYILPNKALIEIAKQMPTDVGHLKRIVKSKYPYVESNLEL 432


>gi|167623763|ref|YP_001674057.1| ribonuclease D [Shewanella halifaxensis HAW-EB4]
 gi|167353785|gb|ABZ76398.1| ribonuclease D [Shewanella halifaxensis HAW-EB4]
          Length = 369

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 83/295 (28%), Gaps = 48/295 (16%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L +D E     T                   + L    +D   + L D +    + ++
Sbjct: 24  DLLVLDTEFVRTRTYY---------------ARLGLIQ-AYDGKTLALIDPLAVSNL-EL 66

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
             + L       + H+   +  V                + + A        L  +G   
Sbjct: 67  FWQLLNKESSVKLLHSCSEDLEVFARYG--QCQPTNLFDSQIAA-------GLAGMG--H 115

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-KRL 175
            L   K+ E   L     KGE+      R     +        Y   DV    +++ + +
Sbjct: 116 GLGYAKLVEQ-TLEVSLDKGESRTDWLKRPLTEAQ------LNYAANDVYYLYKLYPQLV 168

Query: 176 EPLSSKEQELWYLDQTINDRGYCV---DVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           + L  + +  W  ++ +      +   D  LA+   +      +     L  L    +  
Sbjct: 169 DKLKEQGRLDWVYEEGVRMTQGRLDTPDPDLAYLKVKNAFQLTSNQLAVLRDLAKWRMQR 228

Query: 233 SRCLEKLKTWLFLETGLH-LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
           +   +    ++  +  L  L      T    L    +LT Q  ++  +     + 
Sbjct: 229 ALQKDLALGFVVKDHALIGLAKKLPKTSND-LYKLTELTEQEKRI--HGKELIKL 280


>gi|322705302|gb|EFY96889.1| 3'-5' exonuclease [Metarhizium anisopliae ARSEF 23]
          Length = 281

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 19/172 (11%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS--NGLPSAL-KAVG 113
           LK  LE+ ++  V  +   +   L + + +   +       V+  +   G P+     + 
Sbjct: 87  LKNILESENIPKVFFDIRNDSNALFSHYGI--RVGGIRDLQVMEFATRRGPPARFITGLA 144

Query: 114 EALKLS-----SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
             +K       SQK    +         + ++                  EY   DV + 
Sbjct: 145 NCIKYDCPMTESQKQSWLQMKDRAGRLYDPNKGGGYEVFNERPLRRE-ICEYSAQDVALL 203

Query: 169 REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            ++++      S   + ++           VD A    + Q          +
Sbjct: 204 PKLWEAYSTKLSHSNKAFWQMM--------VDDATLKRIKQSQSKHYDGQAE 247


>gi|296284843|ref|ZP_06862841.1| DNA polymerase III epsilon subunit [Citromicrobium bathyomarinum
           JL354]
          Length = 240

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 44/151 (29%), Gaps = 40/151 (26%)

Query: 1   MATLFIDFETRS----------------PIDLTKCG--ICKY--------AEDVCVILFA 34
           M  +  D ET                   +D    G     Y        AE   +   +
Sbjct: 8   MREIIFDTETTGIDPRQGHRMVEIGCVELVDRMPTGETFHAYYNPERDMPAEAEAIHGLS 67

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPI 90
             F      L D            + + +    +VAHN+ F+   L A   L     I +
Sbjct: 68  AQF------LADKPRFADAVDEFLDFVRDD--MLVAHNAGFDFAFLNAELELCTREPICL 119

Query: 91  HRWICTLVLARSNGLP--SALKAVGEALKLS 119
            R I TL +AR        +L A+     + 
Sbjct: 120 TRKIDTLEMARRKNPGGKHSLDALCSRYGVD 150


>gi|262212097|gb|ACY35665.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212109|gb|ACY35671.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212119|gb|ACY35676.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212129|gb|ACY35681.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +           +        +   A  E  D  +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 483 RWMQENHPEHAIEDLFIGTA 502
               +   E        G  
Sbjct: 124 LEAIKKASERGFIKALDGRK 143


>gi|255019824|ref|ZP_05291900.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254970753|gb|EET28239.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 243

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 33/148 (22%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKY-----AEDVCVILFAFGF 37
           M  + +D ET                       +T+    +Y     + D   +    G 
Sbjct: 1   MRQVVLDTETTGIDPRQGHRVIEIGAVELVDREITEGRYQQYLNPGRSSDPEALRV-HGI 59

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWI 94
            D    L D      + +     L + ++ I  HN+ F+   L A           +   
Sbjct: 60  RDD--FLADQPDFADIVEDFLAFLGDAELII--HNAPFDLAFLNAELERVGRPALQNPVR 115

Query: 95  CTLVLARSNGLPSA--LKAVGEALKLSS 120
            TLV AR         L A+     + +
Sbjct: 116 DTLVEARRRHPGQKNDLDALCRRYGVDN 143


>gi|13541654|ref|NP_111342.1| DNA polymerase II [Thermoplasma volcanium GSS1]
          Length = 798

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 59/189 (31%), Gaps = 24/189 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--MPQVLKE 59
             L  D E     ++ +  +  Y     +++  +      ++    +H     +     +
Sbjct: 157 KVLSFDVE----NEINRENVEDY---GKILVIGYSIMFGDIQKKGEIHGDEKEILYRFID 209

Query: 60  AL--ENTDVTIVAHNS-YFERTVLKA---CFNLDIPIHRWICTL----VLARSNGLPSAL 109
            +  E+ DV    +N   ++  V++     + + + + R         ++ +   +   L
Sbjct: 210 LIRAEDPDVI-TGYNIDGYDMLVIQRRMEQYGIHLNLGR--DGSVPRRIMDQFWRVHGRL 266

Query: 110 --KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
                    K+   K E    +  +              +   ++       YC  D  +
Sbjct: 267 ISDTWWNVKKILHPKHESLDYIAMKLLGEGKDSIDRLNIEAEWQKRQDEVISYCIKDADL 326

Query: 168 TREIFKRLE 176
           T  IF++L 
Sbjct: 327 TLRIFEKLR 335


>gi|167465490|ref|ZP_02330579.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 190

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 53  MPQVL-KEALEN--TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPS 107
           +P+ L    L    +   +VAH++ F+ + L       +    ++CT VL++    G  +
Sbjct: 56  IPEELAIPLLACFMSGSIVVAHHAPFDLSFLARYL---VEPSSFVCTRVLSKLVEPGESA 112

Query: 108 ALKAVGEALKLS 119
           +L AV E   + 
Sbjct: 113 SLAAVAERRGIE 124


>gi|94312850|ref|YP_586059.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93356702|gb|ABF10790.1| DNA polymerase III, epsilon subunit [Cupriavidus metallidurans
           CH34]
          Length = 530

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 45/148 (30%), Gaps = 38/148 (25%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL- 57
            +F+D ET         +T+ G+ +   D           +    +      P   Q L 
Sbjct: 35  IVFVDLETTGADAQRDRITEIGVVEVGPDG--------IQEWDTLVDPLTSIPPFVQGLT 86

Query: 58  ----------------KEALENT--DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
                            EAL         VAHN+ F+   LK       +       +CT
Sbjct: 87  GITDEMVRGQPTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTFR-ADVLCT 145

Query: 97  LVLARSNGLP---SALKAVGEALKLSSQ 121
           L L+RS         L A+     L+ +
Sbjct: 146 LRLSRSLFPSVERHGLDALIARFGLTPK 173


>gi|294055851|ref|YP_003549509.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221]
 gi|293615184|gb|ADE55339.1| Ribonuclease D [Coraliomargarita akajimensis DSM 45221]
          Length = 386

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 53/230 (23%), Gaps = 37/230 (16%)

Query: 33  FAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
              G+ D   EL D          L E + + +V  + H++  + T+L+     D     
Sbjct: 40  VQLGYPDGHCELIDAPEIED-WSPLAELMSDPNVVKILHDAQQDLTILRRVCGSD--PKT 96

Query: 93  WICTLVLARSNGLPSA---LKAVGEALKLSSQKMEEGKEL---------IARFCKGETHE 140
              T + A   GL S       +   LK+   K E   +          I          
Sbjct: 97  IFDTQLTAGFIGLSSTISLRDILKTLLKVRLAKTETQSDWVARPLTEAQIKYAEDDVRDS 156

Query: 141 CLYDRNKPNHREAW-------------RLFGEYCKGDVTVTR-------EIFKRLEPLSS 180
                      +A                   Y + D             +  +   +  
Sbjct: 157 VRLMEQILKRADALGRREWIENEMTYYEDAAIYEERDPDTEMPRVRGSGALTHQQRNVLR 216

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                        +        L+      +     K  + ++ +     
Sbjct: 217 ALGSWREWTARRRNLPRSF--ILSDDAIVSLTKRLPKSAEAIKPMKGLTE 264


>gi|269140166|ref|YP_003296867.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
 gi|267985827|gb|ACY85656.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
 gi|304559999|gb|ADM42663.1| DNA polymerase III epsilon subunit [Edwardsiella tarda FL6-60]
          Length = 243

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 46/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPID----------------------LTKCGICKYA--------EDVCVI 31
             + +D ET                           LT      Y         E   V 
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPDRLVDPEAFTVH 66

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDI 88
             +   DD    L D      +       +      +V HN+ F+   +   F     D+
Sbjct: 67  GIS---DD---FLLDKPSFAEVADEFLAFIR--GAELVIHNAPFDIGFMDYEFAKLGRDL 118

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P     CT    LV+AR        +L A+    ++ + K      L+ 
Sbjct: 119 PKTETFCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLD 167


>gi|254462819|ref|ZP_05076235.1| DNA polymerase III, epsilon subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206679408|gb|EDZ43895.1| DNA polymerase III, epsilon subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 224

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRWICTLVLA--RSNG 104
             + Q   + +++  +  V HN+ F+   L A         +P+ + + TL +A  R  G
Sbjct: 66  KQIAQEFLDFVKDDTM--VIHNASFDMKFLNAELGWLNMKQLPMEQALDTLAIARKRFPG 123

Query: 105 LPSALKAVGEALKLSS 120
            P++L A+     + +
Sbjct: 124 SPASLDALCRRFNIDN 139


>gi|14325054|dbj|BAB59979.1| DNA polymerase [Thermoplasma volcanium GSS1]
          Length = 800

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 59/189 (31%), Gaps = 24/189 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV--MPQVLKE 59
             L  D E     ++ +  +  Y     +++  +      ++    +H     +     +
Sbjct: 159 KVLSFDVE----NEINRENVEDY---GKILVIGYSIMFGDIQKKGEIHGDEKEILYRFID 211

Query: 60  AL--ENTDVTIVAHNS-YFERTVLKA---CFNLDIPIHRWICTL----VLARSNGLPSAL 109
            +  E+ DV    +N   ++  V++     + + + + R         ++ +   +   L
Sbjct: 212 LIRAEDPDVI-TGYNIDGYDMLVIQRRMEQYGIHLNLGR--DGSVPRRIMDQFWRVHGRL 268

Query: 110 --KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
                    K+   K E    +  +              +   ++       YC  D  +
Sbjct: 269 ISDTWWNVKKILHPKHESLDYIAMKLLGEGKDSIDRLNIEAEWQKRQDEVISYCIKDADL 328

Query: 168 TREIFKRLE 176
           T  IF++L 
Sbjct: 329 TLRIFEKLR 337


>gi|322832720|ref|YP_004212747.1| ribonuclease D [Rahnella sp. Y9602]
 gi|321167921|gb|ADW73620.1| ribonuclease D [Rahnella sp. Y9602]
          Length = 373

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 80/284 (28%), Gaps = 50/284 (17%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T  P    + G+ +  +   + L     D  P+  W         Q  
Sbjct: 24  KIALDTEFVRTRTYYP----QLGLIQLFDGERLTLI----DPLPITAW---------QPF 66

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGE 114
            + L + DV    H    +  V    F   +     I T +LA  +G P +      V E
Sbjct: 67  IDLLVDPDVIKFLHAGSEDLEVFLNAFG--VMPSPLIDTQILAAFSGRPLSCGFARLVAE 124

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR----E 170
              +   K E   + IAR                           Y   DV        +
Sbjct: 125 TTGVELDKSESRTDWIARPLS-------------------EKQCVYAAADVWYLLPLADQ 165

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           + +  +     +  L         R   +   LA+         R +    L+ L    +
Sbjct: 166 LMRETQDAGWMDAALDECLALCRRRKEVLQPELAYLEISNAFQLRPRQLGCLKLLAAWRL 225

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI 274
           + +R  +    ++  E  L      + T    L +     P+  
Sbjct: 226 NQARQRDLAVNFVVREENLWQVARYQPTSLGELEALGLSGPEIR 269


>gi|296004476|ref|XP_001350990.2| DNA binding protein, putative [Plasmodium falciparum 3D7]
 gi|224591370|emb|CAD49018.2| DNA binding protein, putative [Plasmodium falciparum 3D7]
          Length = 448

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 30/146 (20%)

Query: 53  MPQVLKEALENTDVTIVAHNSYFER-TVLKACFNLDIPIHRWICTLVLARSNG---LPSA 108
           +P  +K  LEN ++  VAH+   E+   L      +I I       +   +      P +
Sbjct: 163 IPISVKNILENEEIIKVAHDIKNEKDMFLSN----NIQIKNVFD--LYNYAIDNFIYPPS 216

Query: 109 LKAVGE-ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L+++ +  L     K       +                        +    Y   D   
Sbjct: 217 LQSLVKIYLNKFLDKKFRLSNWLNYSL-------------------LQEQILYAAVDAYA 257

Query: 168 TREIFKRLEPLSSKEQELWYLDQTIN 193
           +R+I+  L+    K Q          
Sbjct: 258 SRQIYFHLDENKKKSQSYILNYILQE 283


>gi|222480195|ref|YP_002566432.1| hypothetical protein Hlac_1783 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453097|gb|ACM57362.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 254

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 60/179 (33%), Gaps = 24/179 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           T F D ET         G+ ++ +   V   +F  D     L     + +  + L+E   
Sbjct: 88  TCFFDIETT--------GLDEHRD--RVTTVSFHRDGETTTLV--AGEDLTAERLREQFA 135

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +    + + F+   L+  F+++I        +   +  GL   LK + + + +   +
Sbjct: 136 DASLLATFNGARFDVPFLETAFDIEIDTPHL-DLMYPCKRIGLSGGLKPIEKEIGIERDR 194

Query: 123 -MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
               G++ +  + + E              +A      Y + D    R +   +     
Sbjct: 195 PDLSGRDAVRLWREYERG----------DDDALDTLVSYNREDTKNLRTLADTVTETLH 243


>gi|3831454|gb|AAC69936.1| hypothetical protein [Arabidopsis thaliana]
          Length = 237

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 42/168 (25%), Gaps = 32/168 (19%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            +D E  S                   L      +    L D +    +  +L+    + 
Sbjct: 78  AVDTEQHSLRSFLGFTA----------LIQISTHEED-FLVDTIALHDVMSILRPVFSDP 126

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
           ++  V H +  +   L+   +  I +     T                 +A ++ S+   
Sbjct: 127 NICKVFHGADNDVIWLQR--DFHIYVVNMFDT----------------AKACEVLSKPQR 168

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREI 171
               L+   C          + +   +         Y + D      I
Sbjct: 169 SLAYLLETVC--GVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYI 214


>gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
 gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           alligatoris A21JP2]
          Length = 1432

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 38/141 (26%), Gaps = 34/141 (24%)

Query: 2   ATLFIDFETRSPID-----------LTKCGICKYAEDVCV-------------ILFAFGF 37
             +  D ET                + K G     E   +                    
Sbjct: 400 DYISFDIETTGLSPRYHEIIEFGASIIKNGSIVAREQFFIKASKPLSSFTTNLTGITDKM 459

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT-VLKACFN--LDIPIHRWI 94
                            + + +  EN     +AHN+ F+   V +   +    IP   ++
Sbjct: 460 LQEEGI-----ELKTALERILKLFENK--IALAHNAQFDMNFVFQKLLDNCYAIPSISFV 512

Query: 95  CTLVLARSNGLPSALKAVGEA 115
            TL+++R      +   +G+ 
Sbjct: 513 DTLMISRIIFPNKSKHRLGDY 533


>gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 1367

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL- 105
             +       LEN+   IVAHN+ F+   L    K    LD     +I TL LA+S    
Sbjct: 424 EEVLPEFLGFLENS--IIVAHNANFDYRFLRLWIKKVMGLDWE-RPYIDTLALAKSLLKM 480

Query: 106 -PSALKAVGEALKLSS 120
              +L +V E L L  
Sbjct: 481 RSYSLDSVVEKLGLGP 496


>gi|262212173|gb|ACY35703.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +           +        +   A  E  D  +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 483 RWMQENHPEHAIEDLFIGTA 502
               +   E        G  
Sbjct: 124 LEAIKKASERGFIKALDGRK 143


>gi|262212125|gb|ACY35679.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|262212095|gb|ACY35664.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 38/144 (26%), Gaps = 7/144 (4%)

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
                 R   I + G+ +V ADLAGIE R+L+          A                +
Sbjct: 7   PNDHRFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIH 59

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478
              A      R + K +  A  Y  G +           +        +   A  E  D 
Sbjct: 60  QVNADKIGISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 479 ENFCRWMQENHPEHAIEDLFIGTA 502
            +      +   E        G  
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRK 143


>gi|126738511|ref|ZP_01754216.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6]
 gi|126720310|gb|EBA17016.1| DNA polymerase III, epsilon subunit [Roseobacter sp. SK209-2-6]
          Length = 242

 Score = 47.4 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 61/194 (31%), Gaps = 52/194 (26%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET      +     +  E   V LF                      AFG  
Sbjct: 1   MREIVLDTETTGFDPFSG---DRIVEIGAVELFNHMPTGKTYHEYINPERSMPHEAFGVH 57

Query: 39  D-HPVELWDCVHDPVMPQVLKEALENTDV-TIVA--------------HNSYFERTVLKA 82
              P    D +  P  P+  +  L +  V   V               HN+ F+   L A
Sbjct: 58  GIGP----DLLEPPQQPEKGQVTLRDKPVFAKVGQSFLDFVQDSKLVIHNASFDMKFLNA 113

Query: 83  CFNL----DIPIHRWICTLVLA--RSNGLPSALKAVGEALKLSS-QKMEEGKELIARFCK 135
             +      +P+++ I TL +A  R  G P+ L A+    ++ +  +   G  L +    
Sbjct: 114 ELDWMGLPKLPLNQAIDTLAVARKRFPGAPATLDALCRRFQIDNSNRTLHGALLDSEILA 173

Query: 136 GETHECLYDRNKPN 149
               E +  R    
Sbjct: 174 EVYLELIGGRQPDF 187


>gi|289706235|ref|ZP_06502598.1| putative ribonuclease D [Micrococcus luteus SK58]
 gi|289557074|gb|EFD50402.1| putative ribonuclease D [Micrococcus luteus SK58]
          Length = 416

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 47/166 (28%), Gaps = 27/166 (16%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIP 89
           +L     +   + L D    P     L    E    V  + H +  +   L       + 
Sbjct: 65  MLVQLKREGAGIWLVD----PEALDGLAPLQEALAGVEWILHAASQDLPCLAEQ---GLR 117

Query: 90  IHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
             R   T + AR  GLP   L AV E L            L     K  +      R  P
Sbjct: 118 PDRLFDTELAARVAGLPRVGLAAVLEEL------------LGVTLAKEHSAADWSVRPLP 165

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                      Y   DV +   + + L      + +L + +Q    
Sbjct: 166 ------EAMLAYAALDVELLVPLREALIARLEADGKLAWAEQEFEH 205


>gi|170746460|ref|YP_001752720.1| exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
 gi|170652982|gb|ACB22037.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
           radiotolerans JCM 2831]
          Length = 289

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 23/166 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVIL----------FAFGFDDHPVELW---D 46
           M  L +DFET +    + C +   +  D  V+             F   +  V      D
Sbjct: 1   MTVLALDFETANERRDSACAVGLAWIADGRVVRRESHLIRPPEMRFAPGNIRVHGILPAD 60

Query: 47  CVHDPVMPQVLKEALENTDVTIV-AHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
               P    V+   L +    ++ AHN+ F+  VL+A      L +P   ++CT+ ++R 
Sbjct: 61  VADKPDFAAVMAPYLGDLARGLILAHNASFDIGVLRAGLTRAGLPVPDLAYLCTVQVSRR 120

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
                    L  V   L +  +  + G++  A  C       + +R
Sbjct: 121 VFPAPEGCGLGKVARRLGIRFEHHDAGED--AYACAEIALAAMRER 164


>gi|229472305|gb|ACQ72667.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472551|gb|ACQ72790.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212067|gb|ACY35650.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212073|gb|ACY35653.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212087|gb|ACY35660.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212103|gb|ACY35668.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212107|gb|ACY35670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212117|gb|ACY35675.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212149|gb|ACY35691.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212151|gb|ACY35692.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212163|gb|ACY35698.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212185|gb|ACY35709.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212199|gb|ACY35716.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342209|gb|ACY54615.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342219|gb|ACY54620.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342245|gb|ACY54633.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|229472279|gb|ACQ72654.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRGLFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSRAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|220921281|ref|YP_002496582.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS
           2060]
 gi|219945887|gb|ACL56279.1| DNA polymerase III, epsilon subunit [Methylobacterium nodulans ORS
           2060]
          Length = 238

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 42/153 (27%), Gaps = 42/153 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFDD 39
             + +D ET      T     +  E   + L                       AF    
Sbjct: 3   REIVLDTETTG----TDAKTDRLIEIGGIELLNHIPTGREFHRYINPQRAVSQGAFAVHG 58

Query: 40  -HPVELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL-------DIP 89
                L     D  +   +     +   D T V HN+ F+   L A +          I 
Sbjct: 59  LSDAFL----ADKPLFAEILPDFLDFCGDATFVIHNAAFDVGFLNAEYARLGETAPPPIE 114

Query: 90  IHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
           +   + TL LAR     +   L A+     + +
Sbjct: 115 LSAVVDTLALARRKHPNAANNLDALCARYGIDN 147


>gi|146279098|ref|YP_001169257.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025]
 gi|145557339|gb|ABP71952.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025]
          Length = 385

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/278 (10%), Positives = 59/278 (21%), Gaps = 57/278 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWD-CVHDPVMP 54
            + ID E     T                   + L             L D      +  
Sbjct: 22  YVTIDTEFLRERTYWS---------------KLCLIQMALPGKTGEAVLVDPVEAPDMSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L +   +     V H +  +  +        +       T V A   G        GE
Sbjct: 67  EPLYDLFRHEPTVKVFHAARQDLEIF--FVEGRVFPTPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ +  + +  +     +      +      Y   DVT  R I++ 
Sbjct: 118 QVGY--------ETLVKKIAREQLDKTSRFTDWSRRPLSDAQ-KTYAIADVTHLRVIYEW 168

Query: 175 LEPLSS------KEQELWYLDQTIN----DRGYCVDVALAHTLNQIVDVERTKLDQELES 224
           L             +E   +                     T +        +       
Sbjct: 169 LSAQIEKNGRQRWVEEELAILTDPETYTVRPEEAWLRIKTRTTSGRFLAVVKE-LARFRE 227

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
                 +  R        L     L +     T  + +
Sbjct: 228 EYAQKNNVPRSRVLKDDAL-----LEIASTRPTNVEEL 260


>gi|298705698|emb|CBJ28936.1| hypothetical protein Esi_0124_0050 [Ectocarpus siliculosus]
          Length = 955

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 14/93 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------VMPQ 55
             L +D E      L        +             D     +              P+
Sbjct: 421 NVLGLDCE--WEPSLGGTTPNPVST------VQLSLPDGTAYCFQLQRGNKKTTSSNFPK 472

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            L+  LEN  +  V  N   + T L+  + +++
Sbjct: 473 ALQNLLENPSIAKVGVNINSDATYLERDYGIEV 505


>gi|308185320|ref|YP_003929453.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
 gi|308061240|gb|ADO03136.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
          Length = 287

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           F+D ET     L    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 75  FVDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 134

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 135 PSTHEALQELRLFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 192

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 193 LSMRYSLSFLKELLGFG 209


>gi|239993463|ref|ZP_04713987.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC
           27126]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 42/164 (25%), Gaps = 38/164 (23%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY----AEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           M  + +D ET          I +       +  +       +   V +    H       
Sbjct: 1   MRQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTG-----NHFHVYINPGRHIEQEAIE 55

Query: 57  LK----EALENT-----------DVTI----VAHNSYFERTVLKACFNLDIPIHRWI--- 94
           +     E L +                    V HN+ F+   +   F ++      I   
Sbjct: 56  VHGITNEFLADKPTFSQVAQEFVSFIKGAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQ 115

Query: 95  -----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                 TL LAR         L A+ +   + +        L+ 
Sbjct: 116 ICDVLDTLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLD 159


>gi|300855094|ref|YP_003780078.1| putative exonuclease [Clostridium ljungdahlii DSM 13528]
 gi|300435209|gb|ADK14976.1| predicted exonuclease [Clostridium ljungdahlii DSM 13528]
          Length = 202

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 25/121 (20%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVIL----FAFGFDDHPVELWDCVHDP 51
           M  +F D ET          L+   +   A+    I     FA  + +   E        
Sbjct: 1   MNMIFFDTETTGLRPGNICQLSYILVDTSAKPTKTIGKNIFFAVDYIEPSAEKVHGFTVE 60

Query: 52  VM------------PQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
            +                    +N D+  + HN  F+   L       N  + I    CT
Sbjct: 61  TLYKLSSGMNFKDHLDEFLNDFQNADIL-IGHNVNFDIKFLSSEFKNCNEILNIKHTFCT 119

Query: 97  L 97
           +
Sbjct: 120 M 120


>gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
          Length = 305

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 54/189 (28%), Gaps = 36/189 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV L                       A    
Sbjct: 62  MRQIILDTETTG---LNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVH 118

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E   D      +   + + +++ ++ I  HN+ F+   L      L +P       
Sbjct: 119 GLTTEFLSDKPKFAEVAHQILDFVKDAELII--HNAPFDLGFLDAEFARLGLPPFTEHCG 176

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TLV A+        +L A+ +   +S+        L+      E +  +       
Sbjct: 177 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSL 236

Query: 150 HREAWRLFG 158
             +     G
Sbjct: 237 VIDMLDDAG 245


>gi|262212187|gb|ACY35710.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKAVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735]
 gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735]
          Length = 906

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 62/246 (25%), Gaps = 50/246 (20%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELWDCVHDPVMPQVL----- 57
           ET +  D    G+  + +D  ++  A                     D  +P++L     
Sbjct: 505 ETITIFDTETTGLDVFHDD--ILQIAAVKVRNGAVVPGSALSLHLESDHEIPEMLGDIVN 562

Query: 58  --------------KEALEN-----TDVTIVAHNSYFERTVLKACFNLDIP-------IH 91
                         +EAL+          ++ HN+ ++  +L      ++P       + 
Sbjct: 563 PIIEERRNQTLLPRREALQRFVDYARGTVLLGHNADYDIHILANNLQREMPETALPNELS 622

Query: 92  RWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            +  +L L R          LK + E L L  +        +              +   
Sbjct: 623 DYFDSLHLIRLLRPGLRQYKLKYLLEVLHLEGENSHLADADVNATQSLVVFCYDKAKEIV 682

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
             ++A+            V   I           +          D    V V     L 
Sbjct: 683 GEQQAFIRHKR-------VQERIMTLRNNYLPHYRHTVEQL-WKEDEKSGVLVEEMRHLY 734

Query: 209 QIVDVE 214
                E
Sbjct: 735 ATWVEE 740


>gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264]
 gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis
           BMB171]
 gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           B4264]
 gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
 gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis
           BMB171]
          Length = 315

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 69/258 (26%), Gaps = 39/258 (15%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIA-----RFCKGETHECLYDRNKPNHRE 152
                +     L+ +   L +         + I      + C     E     NK     
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCVAIEEEGKRKVNKAM--- 183

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                  Y    V       KR            YLD         V V         + 
Sbjct: 184 -LDETAVYEA--VKEILACNKRNVEWLRCMNVGSYLDIKAFYPVMRVKVKGRKKYV--LT 238

Query: 213 VERTKLDQELESLTYGLV 230
               +  +E+ +      
Sbjct: 239 EILEEDVKEICTSLKCEP 256


>gi|262342261|gb|ACY54641.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 10  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 62

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 63  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 119

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 120 DKLLEAIKKASERGFIKALDGRKII 144


>gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense
           DCB-2]
 gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
           DCB-2]
          Length = 1447

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 51/203 (25%), Gaps = 37/203 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----------------PVELWDCV 48
            ID  T   +DL   G     E +  I                         P  + +  
Sbjct: 419 SIDT-TYCVLDLETTGFSAATEKITEIGI-MKIQGGKIIDQFGCFVNPEKPIPARVVEVT 476

Query: 49  H-------DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICT 96
           +       D      +   + N      +VAHN+ F+   LK        D   + ++ T
Sbjct: 477 NITDDMVRDAETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFD-YTYLDT 535

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC------LYDRNKPNH 150
           L LA+          +G   K    K+E     +                      +   
Sbjct: 536 LSLAKELFPDYKTYKLGRIAKNLGIKVEVAHRALDDVGTTVKVFNIMVDMLKERGVETLE 595

Query: 151 REAWRLFGEYCKGDVTVTREIFK 173
               +   E  + D     + + 
Sbjct: 596 DIDLKAADEAARKDEYKKLKTYH 618


>gi|149191139|ref|ZP_01869398.1| ribonuclease D [Vibrio shilonii AK1]
 gi|148835067|gb|EDL52045.1| ribonuclease D [Vibrio shilonii AK1]
          Length = 289

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 65/222 (29%), Gaps = 25/222 (11%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           +D   + L D        P    E L++  V  V H    +  V    F         + 
Sbjct: 47  YDGEQLSLIDPLTISDFTP--FIELLQDASVLKVLHACGEDLEVFVNSFG--CMPFPMVD 102

Query: 96  TLVLARSNGLPSALKAVG---EALKLSSQKMEEGKELIARFCKGETHECLYDRNKP---- 148
           T ++A   G   +        E L +   K E   + +AR    +  +            
Sbjct: 103 TQIMAAFLGHGLSTGFAALVDEYLGVELDKSESRADWVARPLTDKQLDYAAADVYYLWPL 162

Query: 149 ----NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                 +   + + +  + +  +  +   +  P              +  +   +   LA
Sbjct: 163 YFKLFAQVEAKDWWDAAQQESDLLMQKRGKT-PNPDSAYLDIKGVWQLKRKQLAILKPLA 221

Query: 205 -----HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
                  L + + +     +QEL S+      + +  ++++ 
Sbjct: 222 TWRMNEALKRDLALNFVIKEQELWSIAR---FALKKPKQMEE 260


>gi|229472407|gb|ACQ72718.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   I + G+ +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFIPTPGQIMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +    L++ A   K     + + +A + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + E   + +           ++ 
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRKII 145


>gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51]
 gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1447

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 51/203 (25%), Gaps = 37/203 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----------------PVELWDCV 48
            ID  T   +DL   G     E +  I                         P  + +  
Sbjct: 419 SIDT-TYCVLDLETTGFSAATEKITEIGI-MKIQGGKIIDQFGCFVNPEKPIPARVVEVT 476

Query: 49  H-------DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICT 96
           +       D      +   + N      +VAHN+ F+   LK        D   + ++ T
Sbjct: 477 NITDDMVRDAETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFD-YTYLDT 535

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC------LYDRNKPNH 150
           L LA+          +G   K    K+E     +                      +   
Sbjct: 536 LSLAKELFPDYKTYKLGRIAKNLGIKVEVAHRALDDVGTTVKVFNIMVDMLKERGVETLE 595

Query: 151 REAWRLFGEYCKGDVTVTREIFK 173
               +   E  + D     + + 
Sbjct: 596 DIDLKAADEAARKDEYKKLKTYH 618


>gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 41/161 (25%), Gaps = 36/161 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFDD 39
             + +D ET            +  E   V LF                      A     
Sbjct: 3   RQIVLDTETTGLNP---ASGDRIIEVAGVELFNRRLTGKHYHAYLNPDRASHPDALKVHG 59

Query: 40  -HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL------KACFNLDIPIHR 92
                L D      +   L E + + +V I  HN+ F+   L               +  
Sbjct: 60  LTEEFLSDKPRFEQIADDLLEFVRDAEVII--HNAPFDCAFLDAELERLNRPAFRQHVPL 117

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              TL +A+         L A+ +   + +        L+ 
Sbjct: 118 VTDTLAMAKLQFPGKFNNLDALCKRFGIDNTHRTLHGALLD 158


>gi|227833267|ref|YP_002834974.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975]
 gi|262184251|ref|ZP_06043672.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975]
 gi|227454283|gb|ACP33036.1| Ribonuclease D [Corynebacterium aurimucosum ATCC 700975]
          Length = 407

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 52/192 (27%), Gaps = 35/192 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-DCVHDPVMPQVLKEALEN 63
            ID E  S           Y  D    L     +     L+    H   +   L   L  
Sbjct: 37  AIDTERASS----------YRFDDRAFLVQVRREGAGTFLFAPEHHRDELHAALAPVLN- 85

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
                V H +  +   L     L +       T + AR  G     L A+   L      
Sbjct: 86  -GQEWVVHAAPSDLPSLAW---LGLYPGMLFDTELAARFAGFAHPNLAAMVLEL------ 135

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                       + E      D ++      WR    Y   DV +  E+   L  + +++
Sbjct: 136 ---------FDVELEKGYGDSDWSETPIPRKWR---NYAALDVELLNELAVTLRDILAEQ 183

Query: 183 QELWYLDQTIND 194
            +L +  +    
Sbjct: 184 DKLDWAYEEFER 195


>gi|99078640|ref|YP_611898.1| DNA polymerase III, epsilon subunit [Ruegeria sp. TM1040]
 gi|99035778|gb|ABF62636.1| DNA polymerase III epsilon subunit [Ruegeria sp. TM1040]
          Length = 479

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 42/149 (28%), Gaps = 43/149 (28%)

Query: 4   LFIDFETRSPIDLTKCGICKYAE---DVCVILFAFGFDDHPVELWDCVHDPVMP------ 54
           +  D ET          +   A    +  ++       D  V          +P      
Sbjct: 274 VVFDTETTGLSVTKDAIVELAAARVLNGRIL-------DGEVFETYVDPGRPIPAASTKI 326

Query: 55  --------------QVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIPIH-----RW 93
                         + +  A  +      +VAHN+ F+  +L+     ++          
Sbjct: 327 HGVRDADVAQSPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQQ---EVQTGCSWDHPV 383

Query: 94  ICTLVLARS---NGLPSALKAVGEALKLS 119
           + T++L+          +L A+   L + 
Sbjct: 384 VDTVLLSALVFGISADHSLDALCSRLSIE 412


>gi|328958152|ref|YP_004375538.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4]
 gi|328674476|gb|AEB30522.1| DNA polymerase III subunit epsilon [Carnobacterium sp. 17-4]
          Length = 177

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 35/146 (23%)

Query: 1   MATLFIDFETRSP----------------------IDLTKCGICKYAEDVCVILFAFGFD 38
           M  + +DFET S                         L K     +  +V +        
Sbjct: 1   MNFVALDFETASHQRHSACSIALTVVKNSQIVDHYYSLIKPETEFFWRNVQIHGIT---- 56

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWIC 95
           +  V+       P + + +K      +  IVAHN  F+R VL+     + L  P  + +C
Sbjct: 57  EDDVQTAPSF--PEVWEKIKPFF-KENKLIVAHNLPFDRGVLQGCLDYYQLQQPHFQTLC 113

Query: 96  TLVLARSN---GLPSALKAVGEALKL 118
           T+  +R          L  V + L +
Sbjct: 114 TVQSSRKLITEIPNHKLNTVCDHLGI 139


>gi|229472403|gb|ACQ72716.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472503|gb|ACQ72766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S G+ +V ADL+GIE R+L+          A   G            +   
Sbjct: 10  PRFRELFLPSPGQVMVAADLSGIELRMLSHFL-------ARYDGGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +  +A  +  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSPKAKKKGKEIRAAYIDAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLASIKTASERGFIKAIDGRK 143


>gi|225629620|ref|ZP_03787627.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591525|gb|EEH12558.1| 3'-5' exonuclease [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 135

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 23/142 (16%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQ 121
           ++T + H + F+ ++++     +       CT + +R         +LK +   L     
Sbjct: 1   NITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL----- 53

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L  +  K +      D N             Y   DV     I ++L+ +  +
Sbjct: 54  -------LDTKLNKQQQSSDWGDENLT------DKQKSYAASDVLYLHRIKEKLDLMLER 100

Query: 182 EQELWYLDQTINDRGYCVDVAL 203
           E       +        +++ L
Sbjct: 101 ENRKELAQKCFEFLPTRIELDL 122


>gi|34496712|ref|NP_900927.1| DNA-directed DNA polymerase subunit epsilon [Chromobacterium
           violaceum ATCC 12472]
 gi|34102567|gb|AAQ58932.1| DNA-directed DNA polymerase, epsilon chain [Chromobacterium
           violaceum ATCC 12472]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 44/153 (28%), Gaps = 42/153 (27%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-----DVC---VILFA 34
           M  + +D ET                       LT   +  Y       D     V   +
Sbjct: 1   MRQIILDTETTGLDPQQGHRIIEFAGLEMVGRKLTGKHLHLYIHPEREIDPEAQRVHGIS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPI- 90
             F           H       + + L + ++ I  HN+ F+   L A F    ++    
Sbjct: 61  LEFLAGKPVFAKVAH------EIADFLRDAELII--HNAPFDVGFLNAEFAKAGIEPVGK 112

Query: 91  --HRWICTLVLARSNGLPS--ALKAVGEALKLS 119
                I TL  AR        +L A+ +  ++ 
Sbjct: 113 LCASVIDTLAEARDMFPGKRNSLDALCDRFEID 145


>gi|303246774|ref|ZP_07333051.1| Protein of unknown function DUF1998 [Desulfovibrio fructosovorans
           JJ]
 gi|302491791|gb|EFL51671.1| Protein of unknown function DUF1998 [Desulfovibrio fructosovorans
           JJ]
          Length = 981

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 29/177 (16%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDPVMPQVLKEALENT 64
           +D ETR      + G      +   +  +     D  ++ +       +P  L EAL   
Sbjct: 810 LDVETRRSA--AEVGG---WGNAYKMGISVAVLYDSSLDDFLVYRQEELPA-LYEALAQC 863

Query: 65  DVTIVAHNSY-FERTVLKACFNLDIPIHRWICTL--VLARSNGLPSALKAVGEALKLSSQ 121
           +  +V  N   F+  VL      D      +  L  V AR  G   +L  + +A  L ++
Sbjct: 864 N-LVVGFNINRFDYKVLAGASPFDHHTLPTLDILEKVHAR-LGYRLSLDGLAKA-TLGAR 920

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           K   G E +A + +G                       YCK DV VTR+++      
Sbjct: 921 KSASGLEALAWWKEGR----------------MDEIITYCKQDVAVTRDLYIFGRDN 961


>gi|289772455|ref|ZP_06531833.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|289702654|gb|EFD70083.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
          Length = 330

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 24/138 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHD------- 50
           +D ET        +    + +      V      L     D  PV +     D       
Sbjct: 28  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTLVNPQRDPGPVWIHGLTSDVLRDAPL 87

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTLVLARSNGLP 106
            P + +     L      +VAHN+ F+  ++   +     + P+ + +CT+ L+++  LP
Sbjct: 88  FPDVAEEFAARL--DGRVLVAHNAVFDWQMIAREYARAEREAPVRQRLCTIALSKALDLP 145

Query: 107 ---SALKAVGEALKLSSQ 121
                L+++     +  Q
Sbjct: 146 LPNHKLESLAAHFGVVQQ 163


>gi|21220316|ref|NP_626095.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
 gi|256788562|ref|ZP_05526993.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
 gi|6117870|emb|CAB59443.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces coelicolor A3(2)]
          Length = 328

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 24/138 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHD------- 50
           +D ET        +    + +      V      L     D  PV +     D       
Sbjct: 26  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTLVNPQRDPGPVWIHGLTSDVLRDAPL 85

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTLVLARSNGLP 106
            P + +     L      +VAHN+ F+  ++   +     + P+ + +CT+ L+++  LP
Sbjct: 86  FPDVAEEFAARL--DGRVLVAHNAVFDWQMIAREYARAEREAPVRQRLCTIALSKALDLP 143

Query: 107 ---SALKAVGEALKLSSQ 121
                L+++     +  Q
Sbjct: 144 LPNHKLESLAAHFGVVQQ 161


>gi|189237006|ref|XP_966807.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
          Length = 947

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 20/148 (13%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L     +D    L D +       +L E      +  + H +  +   L+   +L + + 
Sbjct: 296 LIQISTEDKD-YLIDALALRDKLSILNEVFTKNTIVKIFHGADKDIEWLQR--DLSLYVV 352

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T   A++   P    A+  A             L+ +FC    ++     +     
Sbjct: 353 NMFDTHQAAKALQYP----ALSLAF------------LMKKFCNVTPNKQFQLADWRIRP 396

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                   Y + D      I+K ++   
Sbjct: 397 LP-DELKSYAREDTHYLIYIYKMMKREL 423


>gi|262342233|gb|ACY54627.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 167

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|262212131|gb|ACY35682.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTLGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       + G  L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYGKPLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAVKKASERGFIKALDGRKII 145


>gi|229472197|gb|ACQ72613.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472287|gb|ACQ72658.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472311|gb|ACQ72670.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472417|gb|ACQ72723.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   I + G+ +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFIPTPGQIMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +    L++ A   K     + + +A + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + E   + +           ++ 
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRKII 145


>gi|262212389|gb|ACY35811.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|262212301|gb|ACY35767.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRILVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|262212191|gb|ACY35712.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE RVL+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRVLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +           +        +   A  E  D  +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 483 RWMQENHPEHAIEDLFIGTA 502
               +   E        G  
Sbjct: 124 LEAIKKASERGFIKALDGRK 143


>gi|238794443|ref|ZP_04638053.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909]
 gi|238726238|gb|EEQ17782.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909]
          Length = 259

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 64/247 (25%), Gaps = 69/247 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 12  RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVINRRLTGRNFHVYVKPDRLVDP 65

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDI 88
                  + D  +    K    +             +V HN+ F+   +         DI
Sbjct: 66  EAYGVHGISDEFLAD--KPTFADITPEFLDFIRGAELVIHNAAFDIGFMDYEFRMLQQDI 123

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
           P     CT    L+LAR         L A+ +   + + K      L+      E +  +
Sbjct: 124 PKTETFCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAM 183

Query: 143 ------------YDRNKPNHREAWRLFGE--------YCKGDVTVTR--EIFKRLEPLSS 180
                        D+++ +  E  +            Y   D  +     +   ++   S
Sbjct: 184 TGGQTSLSFSMEGDQSQNDSSEDIQRITRPASELKIIYAAEDELLAHESRLDLVMKKGGS 243

Query: 181 KEQELWY 187
               +  
Sbjct: 244 CLWRMPL 250


>gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 1434

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 33/145 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDCV- 48
           +D ET    D+   G+     +  + L A    +  +                 + D   
Sbjct: 416 LD-ETYIVFDVETTGLSA-VYNTIIELAAVKVKNGEIVDRFESFANPHEKLTPLIIDLTG 473

Query: 49  -------HDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL 97
                  + P +  VLK+  E   D T+VAHN+ F+   + A F         +  I TL
Sbjct: 474 ITDDMVENAPEVDDVLKDFHEWIGDATLVAHNASFDMGFINAGFQKIGYGHATNPVIDTL 533

Query: 98  VLARSNGLP---SALKAVGEALKLS 119
            L R          L  + +   + 
Sbjct: 534 ELGRLLYPTFKNYRLNTLCKKFNIE 558


>gi|302776536|ref|XP_002971426.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
 gi|300160558|gb|EFJ27175.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
          Length = 512

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 55/205 (26%), Gaps = 31/205 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D E              Y      V L           +   V    +  VL+   
Sbjct: 245 EIAVDLE-----------NHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVLRSVF 293

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +  V H S  +   L+  F + +       T   AR   +        E   L+  
Sbjct: 294 ANPSIRKVIHGSDRDILWLQRDFGIYV--CNLFDTGQAARVLRM--------ERFGLAF- 342

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L+  FC     +     +      +     +Y + D      ++ +++ +   
Sbjct: 343 -------LLQTFCGVTPDKRYQLADWRLRPLS-AEMLKYAREDTHYLLYVYDKMKGMLRD 394

Query: 182 EQELWYLDQTINDRGYCVDVALAHT 206
            +    L   +  R   + + L   
Sbjct: 395 AETTEDLYLEVCQRSRDLCLQLYEK 419


>gi|262342125|gb|ACY54573.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 67/277 (24%), Gaps = 101/277 (36%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R     S G+ +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFQPSPGQLMVGADLAGIELRMLSHFL-------ARYDQGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +                                   
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKI--------------------------------- 89

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                     H+ + L   TA ++  K  RQ +    +  ++L  A ++  E G      
Sbjct: 90  ---------GHSYDKLLSSTAAKKKGKEIRQAYIEAIDGLDKLLDAIKKASERG------ 134

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             +    GR ++                          K     
Sbjct: 135 -----------------FIKALDGRKIIVDSPH---------------------KALNYC 156

Query: 602 VQAVSRDILAEGMMNATKAGYD-------IVLTVHDE 631
           +Q  S  +    M+   +            +  VHDE
Sbjct: 157 LQGNSAILAKRWMV-INQHNVKQLDLCCSQLAFVHDE 192


>gi|262212141|gb|ACY35687.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +           +        +   A  E  D  +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 483 RWMQENHPEHAIEDLFIGTA 502
               +   E        G  
Sbjct: 124 LGAIKKASERGFIKALDGRK 143


>gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
 gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme
           DSM 15981]
          Length = 1561

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 29/142 (20%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCV-----------ILFAFGFDD----HPVE 43
            +  D ET         + + G  K   D  +           +   F  +     +   
Sbjct: 538 YVVFDIETTGFSPEKNRIIEIGAVKVT-DGKITDKFSTFVNPDVPIPFDIEKLTSINDAM 596

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLA 100
           +       V+     E + +  +  VAHN+ F+   +        L       + T+ +A
Sbjct: 597 VLPYPKIDVILPQFLEFVGDAAL--VAHNASFDVGFIGHYAEKQGLAFNPT-VLDTVTMA 653

Query: 101 RSNGLPSA---LKAVGEALKLS 119
           R          L  V +AL +S
Sbjct: 654 RLLLPNLNRFKLDTVAKALNIS 675


>gi|4455007|gb|AAD21034.1| DNA polymerase gamma [Neurospora crassa]
          Length = 1305

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 55/194 (28%), Gaps = 11/194 (5%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   +++       +  +       +   +++ V A  G   V AD+   E
Sbjct: 692 PQVIPMGTITRRAVERTWLTASNAKKN------RVGSELKAMVRAPPGYVFVGADVDSEE 745

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   +S        T       R   KV      Y
Sbjct: 746 L-WIASVVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTASILGITRNDAKVFNYGRIY 804

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K   ++      +L             +  + A+   + + +        + F+  
Sbjct: 805 GAGLKFASQLLRQFNPSLTEAETTAIATKLYDATKGAKTNRKSLYKRPFWRGGTESFVFN 864

Query: 502 ACERVKKAWRQKHS 515
             E   +  R +  
Sbjct: 865 MLEEFAEQERPRTP 878


>gi|295425904|ref|ZP_06818582.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064402|gb|EFG55332.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 177

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------LFAFGFDDHPVELW---DC 47
           M  + +DFET +    + C +      +  ++            F   +  V      D 
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNNEIVDRFYTVINPQMPFDARNIEVHQITADDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
              P M +V    + L    + + AHN+ F+  V++     +++  P +  I TL  ++ 
Sbjct: 61  RDAPTMAEVWPKIKDLYQPGMLVAAHNARFDTNVMRQSLARYSISEPHYLVIDTLATSKL 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V EAL ++
Sbjct: 121 LEPDLPDHKLDTVSEALNVN 140


>gi|281424647|ref|ZP_06255560.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
 gi|281401235|gb|EFB32066.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
          Length = 906

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 42/153 (27%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELWDCVHDPVMPQVL----- 57
           ET +  D    G+  + +D  ++  A                     D  +P++L     
Sbjct: 505 ETITIFDTETTGLDVFHDD--ILQIAAVKVRNGAVVPGSALSLHLESDREIPEMLGDIVN 562

Query: 58  --------------KEALEN-----TDVTIVAHNSYFERTVLKACFNLDIP-------IH 91
                         +EAL+          ++ HN+ ++  +L      ++P       + 
Sbjct: 563 PIIEERRNQTLLPRREALQRFVDYARGTVLLGHNADYDIHILANNLRREMPETALPNELS 622

Query: 92  RWICTLVLARSNGLP---SALKAVGEALKLSSQ 121
            +  +L L R          LK + E L L  +
Sbjct: 623 DYFDSLHLIRLLRPGLRQYKLKYLLEVLHLEGE 655


>gi|164428985|ref|XP_957747.2| DNA polymerase gamma [Neurospora crassa OR74A]
 gi|166214919|sp|Q9Y767|DPOG_NEUCR RecName: Full=DNA polymerase gamma, mitochondrial; AltName:
           Full=Mitochondrial DNA polymerase catalytic subunit;
           Flags: Precursor
 gi|157072364|gb|EAA28511.2| DNA polymerase gamma [Neurospora crassa OR74A]
          Length = 1456

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 55/194 (28%), Gaps = 11/194 (5%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   +++       +  +       +   +++ V A  G   V AD+   E
Sbjct: 692 PQVIPMGTITRRAVERTWLTASNAKKN------RVGSELKAMVRAPPGYVFVGADVDSEE 745

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   +S        T       R   KV      Y
Sbjct: 746 L-WIASVVGDATFKLHGGNAIGFMTLEGTKSQGTDLHSRTASILGITRNDAKVFNYGRIY 804

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K   ++      +L             +  + A+   + + +        + F+  
Sbjct: 805 GAGLKFASQLLRQFNPSLTEAETTAIATKLYDATKGAKTNRKSLYKRPFWRGGTESFVFN 864

Query: 502 ACERVKKAWRQKHS 515
             E   +  R +  
Sbjct: 865 MLEEFAEQERPRTP 878


>gi|45188230|ref|NP_984453.1| ADR357Cp [Ashbya gossypii ATCC 10895]
 gi|44983074|gb|AAS52277.1| ADR357Cp [Ashbya gossypii ATCC 10895]
          Length = 1131

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 48/432 (11%), Positives = 107/432 (24%), Gaps = 88/432 (20%)

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASR 285
           T   +      E+  T LF +  +H         + VL S   L  +A+++         
Sbjct: 542 TAFRIPHPSSAEQRTTTLFSKPYMHF------MDKNVLQSEYSLAREALKIN-------- 587

Query: 286 SAVLKLNTLVEAMNSDGRLR-GTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIIT 344
           S+        E + +   +         A   G  S        +P+         + + 
Sbjct: 588 SSGSYWTAARERIKTQHVVSKEDFPDQFAMVDGTPSRDDQVGAIIPKIIPMGTVTRRAVE 647

Query: 345 HLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET 404
           +   + ++       I   +++ ++A EG   V AD+   E   +A + G+        T
Sbjct: 648 NTWLTASNAKANR--IGSELKTKIVAPEGYSFVGADVDSEEL-WIASLIGDSVFNIHGGT 704

Query: 405 GEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLN 460
                     +         T       R   K+      Y  G +   ++       L+
Sbjct: 705 AIGYMCLEGTKDAGTDMHTKTASILGCSRNEAKIFNYGRIYGAGVRFAAQLLKQFNPTLS 764

Query: 461 TFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSEL 520
                                   + E                               + 
Sbjct: 765 EEQ--------------TRATAERLYEATKGKTYHSKIF------------------KKF 792

Query: 521 WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYL 580
           W              ++I+  K   +      +       +  S                
Sbjct: 793 WFG----------GSESILFNKLEHIAEQDQPRTPVLGAGITVSLLKRNLGKD------- 835

Query: 581 NTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVC 634
                      T+        +Q+   D   +L   M   +   +    + +++HDE+  
Sbjct: 836 -----------TFLPSRINWAIQSSGVDYLHLLFCSMHYLIEKYRLRARVCISIHDELRY 884

Query: 635 ETPDTDEFNASM 646
              + D +  ++
Sbjct: 885 LVANEDRYRVAL 896



 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 44/191 (23%)

Query: 33  FAFGFDDHPVELW--DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFER-TVLKACFNLD 87
            A    D    LW    +        L     +    V  + HN  ++R  VL+     +
Sbjct: 187 LAVALSDKAWYLWCSPYICGEDNFVHLIPLNTMTRPQVI-IGHNVGYDRSKVLEEY---N 242

Query: 88  IPIHRWI--CTLVLA-------------RS-------------NGLPSALK-AVGEALKL 118
           +   +     T+ L                                       +G    L
Sbjct: 243 LAPSKAFFMDTMSLHISSSGMCSRQRPFYLKNQKTKQQENDGDLDYELNEDLELGNWYNL 302

Query: 119 SSQKMEEGKELIARFC----KGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           S+  M   +++    C    +    +     +K    + ++   +YC  DV  T ++F +
Sbjct: 303 ST--MNSLRDVAKLHCNINLEKTLRDSFEALDKQEVIDKFQQLVDYCSTDVETTSKVFDK 360

Query: 175 LEPLSSKEQEL 185
           + PL  ++   
Sbjct: 361 VYPLFREQCPH 371


>gi|330843627|ref|XP_003293751.1| hypothetical protein DICPUDRAFT_42473 [Dictyostelium purpureum]
 gi|325075888|gb|EGC29725.1| hypothetical protein DICPUDRAFT_42473 [Dictyostelium purpureum]
          Length = 368

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 58/207 (28%), Gaps = 24/207 (11%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-DHPVELWDCVHDPVMPQVL--K 58
             + +D E    +++ K G         + L       +  V L+D +    +   L  K
Sbjct: 164 KQIGLDIE---AVEMGKRG--------EMSLIQISTPSNASVYLFDVLTLGDIIFKLGLK 212

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E LE+  +  V H+   +  +L       + +       +                    
Sbjct: 213 EVLESKVILKVVHDCRRDSEIL--YHKYQVLLTHVYDIQIAHAIILKKIDGNLPIRRFGF 270

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL------FGEYCKGDVTVTREIF 172
           +        +  +++C          +      + W          +Y   D  +   I+
Sbjct: 271 NELTHIYTSKEYSKYCVDIKF--KTKQLFDEDNKIWAKRPIPKLLLDYACLDAAILLPIY 328

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCV 199
           + + P      +  +L    N++    
Sbjct: 329 RTITPKLQSGSDRRFLRYHFNEQLRYF 355


>gi|325267110|ref|ZP_08133779.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
           denitrificans ATCC 33394]
 gi|324981463|gb|EGC17106.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
           denitrificans ATCC 33394]
          Length = 245

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 52/181 (28%), Gaps = 34/181 (18%)

Query: 2   ATLFIDFETRS---------PIDLTKCGICKYAEDV---CVILF----------AFGFDD 39
             + +D ET              +   G+           + L+          A     
Sbjct: 4   RQIILDTETTGFEHSRADNPDRMIEFAGLEMVNRQFTQNDLHLYIHPERDIPAEATAV-- 61

Query: 40  HPVELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIP----IHR 92
                 D + D  +   + + + +      ++ HN+ F+   L      + +P    +  
Sbjct: 62  -HGITLDDLADKPVFADVAQQIFDFLKGAELIIHNAKFDVGFLNAEFARVGLPNIDSVCT 120

Query: 93  WICTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            + TL +A  R  G  ++L A+   L +   +      LI     G  +  +        
Sbjct: 121 VVDTLEMARKRYPGQKNSLDALCTRLGVDRSRRVLHGALIDCELLGGVYLAMTRGQFSLD 180

Query: 151 R 151
            
Sbjct: 181 D 181


>gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
 gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
          Length = 318

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 69/258 (26%), Gaps = 39/258 (15%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIA-----RFCKGETHECLYDRNKPNHRE 152
                +     L+ +   L +         + I      + C     E     NK     
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEEGKRKVNKAM--- 186

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                  Y    V       KR            YLD         V V         + 
Sbjct: 187 -LDETAVYEA--VKEILACNKRNVEWLRCMNVGSYLDIKAFYPVMRVKVKGRKKYV--LT 241

Query: 213 VERTKLDQELESLTYGLV 230
               +  +E+ +      
Sbjct: 242 EILEEDVKEICTSLKCEP 259


>gi|262342117|gb|ACY54569.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R     S G+ +V ADLAGIE R+L+          A   G            +   
Sbjct: 10  SRFRELFQPSPGQVMVGADLAGIELRMLSHFL-------ARYDGGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +    L++ A   K       + +A + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKQLSSSAAKKKGKEIRTAYVEAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + E   + +           ++ 
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRKII 145


>gi|71907224|ref|YP_284811.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Dechloromonas aromatica RCB]
 gi|71846845|gb|AAZ46341.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Dechloromonas aromatica RCB]
          Length = 238

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 32/160 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LW----DCVHDPVMPQ 55
           M  + +D ET            +  E  C+ +    F  H +        +         
Sbjct: 1   MRQIVLDTETTGLDP---RSGHRIIEVACIEMVNRRFTGHHLHKYINPEREIDEGAQAVH 57

Query: 56  VL-KEALENT---------------DVTIVAHNSYFERTVLKACFNL--DIPIH----RW 93
            +  E L +                   ++ HN+ F+   L A  +    +P+       
Sbjct: 58  GITLEFLADKPKFADIADEFLEFINGAELIIHNAPFDIGFLNAELDRLGRVPVGTICNGV 117

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           I TL +A+        +L A+ E  ++ +        L+ 
Sbjct: 118 IDTLRMAKELHPGKRNSLDALCERYEIDNSSRTLHGALLD 157


>gi|89094696|ref|ZP_01167632.1| DNA polymerase II [Oceanospirillum sp. MED92]
 gi|89081042|gb|EAR60278.1| DNA polymerase II [Oceanospirillum sp. MED92]
          Length = 785

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 68/233 (29%), Gaps = 57/233 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEA 60
             L ID ET    D        YA+D  ++L    G D   ++   C  +  +     + 
Sbjct: 154 RILSIDLETTMRAD-QILSAAFYADDFQLVLMQGQGIDTDTLDY--CADETTLIHKFIQV 210

Query: 61  LE--NTDVTIVAHN-SYFERTVLKACFN-LDIPI----------------HRWI------ 94
           ++  + D+  +  N   F+  VLK   + L+IP+                 +        
Sbjct: 211 VQQYDPDI-FIGWNVINFDFKVLKNRADQLNIPLLLGRDQQPLQLYQSGQGKVFARMAGR 269

Query: 95  ------CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                  TL  A       +L+ V                L          +   +  + 
Sbjct: 270 VVLDGIDTLKGATYQFESFSLENVSREF------------LDRGKLIDHVDDRGGEIQRL 317

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
              +       Y   D  +  +IF++ + ++        L +     G  +D 
Sbjct: 318 FREDK-ASLARYNLEDCKLVWDIFEKADLINY-------LIERARLTGLPLDK 362


>gi|330813924|ref|YP_004358163.1| ribonuclease D [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487019|gb|AEA81424.1| ribonuclease D [Candidatus Pelagibacter sp. IMCC9063]
          Length = 352

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 81/263 (30%), Gaps = 48/263 (18%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             LFID E     T                   +   +  +D     L DC+ D  + + 
Sbjct: 20  KVLFIDTEFDRRNTYYS---------------ELSFISV-YDGTKFWLIDCLTDIKV-EA 62

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L + L N  +T V H S  +  + K    L +P++    T   A+  G    +      L
Sbjct: 63  LSKVLNNKKITKVLHGSQQDLEIFKH---LQLPLNSLFDTQTAAQFCGFEQPISYANAVL 119

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           K+   K+   K+L                             EY K DV   + ++    
Sbjct: 120 KI--CKVSLDKQLQNSDWLKRPVNKKT--------------IEYLKNDVKYLKPLYAFFS 163

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD---QELESLTYGLVSSS 233
               K +          +    +D A     + ++  +        +  +SL +     +
Sbjct: 164 KELKKNKNF----SYFKEEMSIIDQASETITSSLIRKKMNSKTINNKSFQSLLHTREQLA 219

Query: 234 RCLEKLKTWLFLETGLHLEDLTE 256
           +     K W+F ++G+      +
Sbjct: 220 QKKNLPKNWIFPDSGILTIIKNK 242


>gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 242

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 42/156 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + +     Y     +I      +                     D 
Sbjct: 9   RQIILDTETTG---MNQAAGAIYLGH-RIIEIG-CVEVINRRLTGRHYHEYINPQQLIDE 63

Query: 41  PVELW------DCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNL------- 86
                         + P   ++ +  +E      +VAHN+ F+ + +   F L       
Sbjct: 64  EAIQVHGISNEYVANKPKFAEIAQSFIEFIDGAEVVAHNASFDISFMDHEFGLLRPKGPK 123

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
              I   + TL +A+         L A+ +   + +
Sbjct: 124 TADICGILDTLAIAKYLHPGQKNNLDALCKRYGIDN 159


>gi|258541965|ref|YP_003187398.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633043|dbj|BAH99018.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636100|dbj|BAI02069.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639155|dbj|BAI05117.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642209|dbj|BAI08164.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645264|dbj|BAI11212.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648319|dbj|BAI14260.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651372|dbj|BAI17306.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654363|dbj|BAI20290.1| DNA polymerase III exonuclease epsilon subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 224

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 33/148 (22%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--- 56
           M   +  D ET            +  E   + L                 +  +P+    
Sbjct: 1   MKRSILFDTETTGLDP---ATGDRVIEIAALELVG-DLPTGRNFHTLIDPERDVPEEASR 56

Query: 57  --------------LKEALEN-----TDVTIVAHNSYFERTV----LKACFNLDIPIHRW 93
                           E  ++      D  ++AHN+ F+       LK      + + R 
Sbjct: 57  VHGFTRADLEGKPKFAEIADDFLAFVGDDPLIAHNARFDFGFMNAELKRAGKKTLGLDRM 116

Query: 94  ICTLVLARSN--GLPSALKAVGEALKLS 119
           + TL +AR    G+P++L A+     + 
Sbjct: 117 VDTLDMARERFPGMPNSLDALCRRFGVD 144


>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
 gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
          Length = 1435

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 418 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 474

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        ++   +  I TL 
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLE 534

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIE 558


>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
 gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
          Length = 1433

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        ++   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
 gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 1433

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        ++   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 244

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 54/189 (28%), Gaps = 36/189 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTG---LNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E   D      +   + + +++ ++ I  HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLSDKPKFAEVAHQILDFVKDAELII--HNAPFDLGFLDAEFARLGLPPFTEHCG 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TLV A+        +L A+ +   +S+        L+      E +  +       
Sbjct: 116 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSL 175

Query: 150 HREAWRLFG 158
             +     G
Sbjct: 176 VIDMLDDAG 184


>gi|262212189|gb|ACY35711.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342241|gb|ACY54631.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDEL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|238921062|ref|YP_002934577.1| DNA polymerase III subunit epsilon [Edwardsiella ictaluri 93-146]
 gi|238870631|gb|ACR70342.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 243

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 46/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPID----------------------LTKCGICKYA--------EDVCVI 31
             + +D ET                           LT      Y         E   V 
Sbjct: 7   RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPDRLVDPEAFTVH 66

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDI 88
             +   DD    L D      +       +      +V HN+ F+   +   F     D+
Sbjct: 67  GIS---DD---FLLDKPSFAEVADEFLAFIR--GAELVIHNAPFDIGFMDYEFAKLGRDL 118

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P     CT    LV+AR        +L A+    ++ + K      L+ 
Sbjct: 119 PKTETFCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLD 167


>gi|213961969|ref|ZP_03390234.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
 gi|213955322|gb|EEB66639.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 61/250 (24%), Gaps = 83/250 (33%)

Query: 2   ATLFIDFET------RSPIDLTKCGI----------------------CKYAEDVCVILF 33
             LF+D ET       S +      +                        +AE   ++  
Sbjct: 9   DILFLDIETVPLHQQYSELSAETQMLWEEKTRYQRKEEFSAEEFYDRAGIWAEFGKIVCI 68

Query: 34  AFGFDDHPVELWDCVHDPV------MPQVLKEALEN-----------TDVTIVAHNSY-F 75
           +       V  +   H              K  LE+            +    AHN   F
Sbjct: 69  S-------VGYFSFRHQQRTFRVTSFTGEEKNLLEDFGRLVNEHFSRPNKLFCAHNGKEF 121

Query: 76  ERTVLKACF---NLDIP-------IHRWI----CTLVLARSNGLPS--ALKAVGEALKLS 119
           +   +        ++IP          W      T+ + +        +LK +   L + 
Sbjct: 122 DFPYISRRMIINGIEIPQKLQLFGKKPWEIPHLDTMEMWKFGDYKHYTSLKLLAHILGIP 181

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           S K                 +    RN   +         YC+ D     +I  R    +
Sbjct: 182 SPKD--------------DIDGSEVRNVFYNEGDIERIATYCEKDTITVAQILLRFRNDT 227

Query: 180 SKEQELWYLD 189
             + +   + 
Sbjct: 228 LLDDDEILIL 237


>gi|170756602|ref|YP_001781306.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           B1 str. Okra]
 gi|169121814|gb|ACA45650.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           B1 str. Okra]
          Length = 195

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 25/122 (20%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVILFA----FGFD--DHPVELWDCVH 49
           M  +FID ET          LT C     +     + FA    F  D  +   E      
Sbjct: 1   MKKIFIDTETTGLEPGEIIQLTYCVCDINSRGEEKVSFAKNFFFDVDYIEESAEAIHGFS 60

Query: 50  DPVMP-----QVLKEALEN-----TDVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
              +      +  K+          D   +AHN  F+R           +++     + C
Sbjct: 61  VEKLKILSKGKKFKDLASEISSDLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPKEFFC 120

Query: 96  TL 97
           T+
Sbjct: 121 TM 122


>gi|323143749|ref|ZP_08078417.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT
           12066]
 gi|322416462|gb|EFY07128.1| DNA polymerase III, epsilon subunit [Succinatimonas hippei YIT
           12066]
          Length = 309

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 60/240 (25%), Gaps = 43/240 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDV--CVI-------LFAFGFD-----DHPVELW-- 45
             + +D ET    D    G  +  E     +I          F  +     D        
Sbjct: 5   RQVALDTETTGKSDDGTTGTHRIIEVGCVEIINRRLTGRQLQFFVNPDRHIDEEATEVHG 64

Query: 46  -------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN------LDIPIHR 92
                  D  H   +   L + +  +++ I  HN+ F+   L   ++          + +
Sbjct: 65  ITDEMLADKPHFADVANELIDFIRGSELLI--HNAKFDSAFLDKEWDLLKLNEHTKDMCK 122

Query: 93  WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
            + T+ LAR       + L  +     + + +      L+      E +  +        
Sbjct: 123 IVDTVELARKINPNNQANLDNLCSIYDIDNSRRTVHGALLDAQLLAEVYLAMTGGQSSFD 182

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                        D                        D+        + +A +  ++  
Sbjct: 183 ----------FGEDSVNALSRHWERPKDIKLPLMHVETDRHAVHVAQMISLAQSTKISDD 232


>gi|291299881|ref|YP_003511159.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728]
 gi|290569101|gb|ADD42066.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728]
          Length = 407

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 48/167 (28%), Gaps = 25/167 (14%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
                L           L D      + + L  AL +T+   + H +  +   L      
Sbjct: 60  QPRAYLIQLRRAGAGTALVDPTGFEDL-RELNAALADTE--WILHAASQDLPCLA---GE 113

Query: 87  DIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
            +   R   T + AR  G     L A+ E L         G  L       E H    D 
Sbjct: 114 GMRPPRLFDTELAARLCGFERVGLAALVEKL--------LGFTL-------EKHHSAADW 158

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
           +       W     Y   DV +  E+   L+     + +  + D+  
Sbjct: 159 STRPLPADW---LTYAALDVELLVELRDILDAELRLQGKRDWADEEF 202


>gi|225561715|gb|EEH09995.1| DNA polymerase gamma [Ajellomyces capsulatus G186AR]
          Length = 1146

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 82/330 (24%), Gaps = 75/330 (22%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ V A  G   V AD+   E
Sbjct: 670 PQIIPMGTITRRAVENTWLTASNAKAN------RVGSELKAMVRAPPGYVFVGADVDSEE 723

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   +S        T       R   KV      Y
Sbjct: 724 L-WIASLVGDAQFQIHGGNAIGFMTLEGTKSAGTDLHSKTANILGISRNDAKVFNYGRIY 782

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +++            EE +      + + +N       + F+  
Sbjct: 783 GAGLKFAATLLRQFNPSMSEQETKRVAAKLYEETKGTRTNRKILSDNPFWRGGTESFVFN 842

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +                  +       A  RR +        +      
Sbjct: 843 KLEEFAEQERPRTP----------------VLGAGITEALMRRFINKGSFMTSR------ 880

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 881 ------------------------------------INWAIQSSGVDYLHLLIISMDFLI 904

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                   + +TVHDEI     + D++ A+
Sbjct: 905 RRFNLDARLAITVHDEIRYLVKEHDKYRAA 934


>gi|229472433|gb|ACQ72731.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R     + G+ +V ADL+GIE R+LA      +  +        D++     +    
Sbjct: 10  GRFRELFKPTPGQVMVGADLSGIELRMLAHYLARYDSGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R   K +  A  Y  G     K   ++  +    A   +   A     D  
Sbjct: 67  ------GISRKQVKTVTYAFLYGAGDVKIGKSLDSSLSDKKAKAKGSEIRKAYVSAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
                  ++  +           
Sbjct: 121 GDLLAAVKSAGDRGFVKAIDQRK 143


>gi|283853436|ref|ZP_06370680.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
 gi|283571156|gb|EFC19172.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
          Length = 1007

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 29/171 (16%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGF-DDHPVELWDCVHDPVMPQVLKEALENT 64
           +D ETR      + G    A     +  +     D  ++ +       +P+ L +AL   
Sbjct: 837 LDVETRRSA--AEVGGWCNAHQ---MGISVAVLYDSRLDDFLVYRQEELPE-LYQALTAL 890

Query: 65  DVTIVAHNSY-FERTVLKACFNLDIPIHRWICTL--VLARSNGLPSALKAVGEALKLSSQ 121
           D  IV  N   F+  VL      D      +  L  V AR  G   +L  + +A  L ++
Sbjct: 891 D-LIVGFNINRFDYKVLAGISPFDHRALPTLDILEKVHAR-LGYRLSLDGLAKA-TLGTR 947

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           K   G + +A + +G                       YCK DV VTR+++
Sbjct: 948 KSATGLDALAWWKEGR----------------LDEITAYCKKDVAVTRDLY 982


>gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit
           [Anaerococcus vaginalis ATCC 51170]
          Length = 1398

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 55/177 (31%), Gaps = 47/177 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV----------------ELW 45
             +  D ET         G+ KY + +  I  A   ++  +                ++ 
Sbjct: 383 RFIVFDLETT--------GLSKYIDKITEIG-AVKIENGEIIEVFNELVNPEKMIPQKVV 433

Query: 46  DCV--------HDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKACF-NLDIPIHRWI- 94
           +            P + +VL + LE + D   V  N+ F+   +K    NL         
Sbjct: 434 ELTGITNEMVMDKPKIDEVLPKFLEFSKDSYFVGQNTDFDIGFIKEACDNLSYKFEPIYL 493

Query: 95  CTLVLARSNGLPS---ALKAVGEALKLS--------SQKMEEGKELIARFCKGETHE 140
            TL +AR+        +L  + + L +            M   K  I  F K +   
Sbjct: 494 DTLPMARAVFPTMGRFSLDKLAKKLGVGPFNHHRASDDAMTTAKIFIKLFEKIKDKN 550


>gi|242239440|ref|YP_002987621.1| ribonuclease D [Dickeya dadantii Ech703]
 gi|242131497|gb|ACS85799.1| ribonuclease D [Dickeya dadantii Ech703]
          Length = 403

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 49/203 (24%), Gaps = 40/203 (19%)

Query: 1   MATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ 55
           M  + +D E     T                   + L    FD   + L D +    + Q
Sbjct: 51  MPQVALDTEFVRTRTYY---------------PQLGLIQL-FDGERLSLIDPLSI-TVWQ 93

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
              + L +  VT   H    +  V    F   +    ++ T +L    G P +       
Sbjct: 94  PFCDLLLDPAVTKYLHAGSEDLEVFLNAFG--LLPTPFVDTQILVAFLGKPLSYGFAALV 151

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                  +++ +       +  +                    +Y   DV     +  RL
Sbjct: 152 ADYMQVTLDKSESRTDWLARPLS----------------EKQCQYAAADVYYLLPMAIRL 195

Query: 176 EPLSSKEQELWYLDQTINDRGYC 198
              ++                  
Sbjct: 196 VEETTSAGWWEAALDECRQLCQR 218


>gi|320457724|dbj|BAJ68345.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 235

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 34/139 (24%), Gaps = 28/139 (20%)

Query: 2   ATLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDD--------------HPVE 43
             + +D ET         +T+ G  +  +   V  F    +                   
Sbjct: 33  DYVALDLETTGFYPNSCAITEIGAVRVRKGHIVDQFQQLVNPLRPIPRQITTLTGITDAM 92

Query: 44  LWDCVHDPVMPQVLKEALENTDV-----TIVAHNSYFERTVLKACFNLDIPIHRW----I 94
           + D      +       L           IV HN  F+   L       I    +     
Sbjct: 93  VADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLD-YNTRHIAGCGFACADY 151

Query: 95  CTLVLARSNGLPSALKAVG 113
            T+ ++R+         + 
Sbjct: 152 DTMQISRALFPAQRHHRLA 170


>gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 264

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 23/143 (16%)

Query: 2   ATLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDD------HPVELWDCVHD- 50
             +  D ET        D+ +    K      V  F+   +          ++     + 
Sbjct: 57  NYVVFDLETTGISAVKDDIIEISALKVKNHEQVETFSRLVNPRRPIPAGATKVNGITDEM 116

Query: 51  ---PVMPQVLKEALEN--TDVTIVAHNSY-FERTVLKACFNLDIP---IHRWICTLVLAR 101
                  + +     +      ++ HN   F+   L    +       ++ +I TL +AR
Sbjct: 117 VQSEPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAADEVCRKAVLNDFIDTLFMAR 176

Query: 102 SNGLPSA---LKAVGEALKLSSQ 121
           +     +   L  + +  K+SS+
Sbjct: 177 ALLPGLSRHRLTDLADYFKISSE 199


>gi|262342205|gb|ACY54613.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 14/147 (9%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNVA 420
             R   I + G+ +V ADLAGIE R+L+      +  +        D++     +     
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFLARYDDGRYADILLNGDIHQVNADKI---- 66

Query: 421 PAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
                   R + K +  A  Y  G +            L++ A   K     + + +A +
Sbjct: 67  -----GISRKLVKTVTYAFLYGAGDEKI---GHGYDKLLSSQAAKKKGKEIRQAYIEAID 118

Query: 481 FCRWMQENHPEHAIEDLFIGTACERVK 507
               + E   + +           ++ 
Sbjct: 119 GLDKLLEAIKKASERGFIKALDGRKII 145


>gi|262212193|gb|ACY35713.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 185

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 4   RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 56

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 57  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 113

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 114 DKLLEAIKKASERGFIKALDGRKII 138


>gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315]
 gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315]
          Length = 244

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 53/188 (28%), Gaps = 36/188 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTG---LNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E   D      +   + + +++ ++ I  HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLSDKPKFAEVAHQILDFVKDAELII--HNAPFDLGFLDAEFARLGLPPFTEHCG 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TLV A+        +L A+ +   +S+        L+      E +  +       
Sbjct: 116 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSL 175

Query: 150 HREAWRLF 157
             +     
Sbjct: 176 VIDMLDDA 183


>gi|159906145|ref|YP_001549807.1| exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C6]
 gi|159887638|gb|ABX02575.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
           maripaludis C6]
          Length = 191

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 36/123 (29%)

Query: 3   TLFIDFETRSPID----------------LTKCGICKYAED------VCVILFAFGFDDH 40
            +F+D ET                     L K     Y+ D        V        D 
Sbjct: 2   YVFLDTETTGLHPGQIAQLSYLVTDKNLKLKKVFNQYYSVDRMSRSAAKVHGLTMDILDE 61

Query: 41  PVELWDCVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWI 94
                   +          +++ LE++ +  + HN  F+   LKA       +       
Sbjct: 62  ------LSNGMTFEDTVDEVRDDLEDSVI--IGHNISFDIRFLKAEFERLGPEYIPKDKF 113

Query: 95  CTL 97
           CT+
Sbjct: 114 CTM 116


>gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
           824]
 gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
           824]
 gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA
           2018]
          Length = 1452

 Score = 47.0 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 23/138 (16%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVH------ 49
              +D ET         +T+ GI KY     +  F+   +     P  + +  +      
Sbjct: 428 YCVLDLETTGFSPKTEKITEIGIMKYENGKVIDKFSLFVNPEKPIPARVVEVTNITDDMV 487

Query: 50  --DPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN 103
                + +V  + LE      +VAHN+ F+   LK        +     ++ TL LA++ 
Sbjct: 488 KNAETIDKVFPKMLEFIKGSVLVAHNASFDIGFLKHNAKVLGYEFDFT-YLDTLSLAQAV 546

Query: 104 GL---PSALKAVGEALKL 118
                   L  + + L +
Sbjct: 547 FPQYKSYKLGRIAKNLGI 564


>gi|293192610|ref|ZP_06609564.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
 gi|292820117|gb|EFF79114.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
          Length = 414

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 38/191 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E        +    +Y  D  ++      +D    L D  H      VL+  +E+
Sbjct: 51  IALDVE--------RAQGFRYGSDPYLV--QIRREDVGTFLID-THALPDLSVLQPGVED 99

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLSSQ 121
                + H+   +   L+    + +       T + AR  GL    L AV E  L L   
Sbjct: 100 ---VWLLHDCLQDLPNLRQ---VGLRPSALFDTEIAARLIGLERFGLAAVVEQVLGLGLV 153

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K  +  +                R  P      + +  Y   DV +  E++ RL     +
Sbjct: 154 KDHQASDW-------------SVRPLP------KEWLRYAALDVELLTELYYRLSKRLDE 194

Query: 182 EQELWYLDQTI 192
                +  Q  
Sbjct: 195 MGRWEWAQQEF 205


>gi|255528639|ref|ZP_05395399.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296185899|ref|ZP_06854305.1| exonuclease [Clostridium carboxidivorans P7]
 gi|255507668|gb|EET84148.1| Exonuclease RNase T and DNA polymerase III [Clostridium
           carboxidivorans P7]
 gi|296049567|gb|EFG88995.1| exonuclease [Clostridium carboxidivorans P7]
          Length = 196

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 25/122 (20%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVILFA----FGFD-----DHPVELWD 46
           M  +F+D ET          LT C     +     + FA    F  D        V  + 
Sbjct: 1   MKKIFLDTETTGLEPGQIIQLTYCVCDINSRGEEKVCFAKNFFFDVDYVEPSAEAVHGFS 60

Query: 47  CVHDPVMP--QVLKEALEN-----TDVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
                 +   Q  K+A             +AHN  F++           ++     ++ C
Sbjct: 61  VERLKTLSMGQEFKDAASEVAADLEGGIFIAHNVRFDQKFVTAEFDRLNSIHWNPAKFFC 120

Query: 96  TL 97
           T+
Sbjct: 121 TM 122


>gi|294675436|ref|YP_003576052.1| exonuclease [Prevotella ruminicola 23]
 gi|294473646|gb|ADE83035.1| exonuclease [Prevotella ruminicola 23]
          Length = 163

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 23/136 (16%)

Query: 5   FIDFETRSPIDLTKCGICK-YAEDVCVILFAFG-FDDHPVEL------------WDCVHD 50
            IDFET +    + C +      +  ++   +      P                D    
Sbjct: 6   AIDFETANNERTSVCSVGVVIVRNGEIVDTFYSLIQPEPNYYNYWCSQVHGLSREDTEDA 65

Query: 51  PVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG- 104
           PV P+V K+   L +  + +VAHN  F+ + LK    C+ +D P + + CT V +R    
Sbjct: 66  PVFPEVWKQIEPLID-GLPLVAHNKSFDESCLKAVFRCYQMDYPDYPFYCTCVASRKAFP 124

Query: 105 --LPSALKAVGEALKL 118
                 L  V E    
Sbjct: 125 QLPNHQLHTVSEYCGY 140


>gi|307102324|gb|EFN50630.1| hypothetical protein CHLNCDRAFT_59476 [Chlorella variabilis]
          Length = 680

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 21/155 (13%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70
           R+ +D+       Y+   C++  +         L D +       +L   L N  +  V 
Sbjct: 137 RTALDVEHHSTHTYSGLTCLVQLS---TGSKDYLIDSLALRQDMHLLAPVLSNPRICKVI 193

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           H    +   L+  F L +       T             +   + L    + +     L+
Sbjct: 194 HGGGNDAVWLQRDFGLFL--VNVFDT-------------EKACQVLGYHQRSLG---ALL 235

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
            RFC  +  + L  R     R       +Y + DV
Sbjct: 236 QRFCGIQADKSLGQRADWRRRPLSAELIDYARRDV 270


>gi|260429270|ref|ZP_05783247.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
 gi|260419893|gb|EEX13146.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
          Length = 230

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 48/163 (29%), Gaps = 40/163 (24%)

Query: 1   MATLFIDFETR-----SPIDLTKCGI-------------CKYA--------EDVCVILFA 34
           M  + +D ET      +   + + G               +Y         E   V    
Sbjct: 1   MREIVLDTETTGFEPETGDRIVEIGAVELYNHVPTGKTYHQYINPERSMPNEAFEVHGL- 59

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPI 90
                    L D      +     E + +  +  V HN+ F+   L A         +P 
Sbjct: 60  -----GDDFLRDKPLFAQIVDDFLEFIGDAKL--VIHNAAFDVKFLNAELRWSKRPQLPR 112

Query: 91  HRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIA 131
              I TL +AR    G P++L A+     + +        L+ 
Sbjct: 113 DCAIDTLEIARRKFPGSPASLDALCRRFGIDNSSRTLHGALLD 155


>gi|229472509|gb|ACQ72769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLARYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRRLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRK 143


>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
 gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
          Length = 1433

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        ++   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKVGIEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|295670549|ref|XP_002795822.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb01]
 gi|226284907|gb|EEH40473.1| DNA polymerase gamma [Paracoccidioides brasiliensis Pb01]
          Length = 1142

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/317 (11%), Positives = 72/317 (22%), Gaps = 75/317 (23%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ V A  G   V AD+   E
Sbjct: 669 PQVIPMGTITRRAVENTWLTASNAKAN------RVGSELKAMVRAPPGYVFVGADVDSEE 722

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   ++        T       R   KV      Y
Sbjct: 723 L-WIASLVGDAQFQIHGGNAIGFMTLEGTKAAGTDLHSKTAKILGISRNDAKVFNYGRIY 781

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      ++             EE +      +            + F+  
Sbjct: 782 GAGLKFAATLLRQFNPSMPEQQTKQVAAKLYEETKGTRTNRKIFSNRPFWRGGTESFVFN 841

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +                  +       A  RR +        +      
Sbjct: 842 KLEEFAEQERPRTP----------------VLGAGITEALMRRFINKGSFMTSR------ 879

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 880 ------------------------------------INWAIQSSGVDYLHLLIISMDFLI 903

Query: 616 NATKAGYDIVLTVHDEI 632
                   + +TVHDEI
Sbjct: 904 RRFNLDARLAITVHDEI 920


>gi|163797056|ref|ZP_02191011.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199]
 gi|159177572|gb|EDP62125.1| hypothetical protein BAL199_11121 [alpha proteobacterium BAL199]
          Length = 230

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 40/152 (26%)

Query: 1   MATLFIDFETRSPID--------------LTKCGICKYAED------------VCVILFA 34
           M  + +D ET                   +      +                  V   +
Sbjct: 1   MREIVLDTETTGLDPDTGDRIVEIGCVELINHVPTGRTLHHYINPERDMPLGAFEVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPI 90
                  +  +       +   + E L +    +V HN+ F+       L+     +IP+
Sbjct: 61  ----SEFLSAYPVF--GALADEILEFLGDA--VLVIHNASFDMKFINAELRRLNRPEIPM 112

Query: 91  HRWICTLVLAR--SNGLPSALKAVGEALKLSS 120
            + + T+ LAR    G  ++L A+    ++ +
Sbjct: 113 SQALDTVQLARRKYPGAQASLDALCRRFEIDN 144


>gi|327291874|ref|XP_003230645.1| PREDICTED: exosome component 10-like, partial [Anolis carolinensis]
          Length = 329

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 49/181 (27%), Gaps = 34/181 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E              +    C++  +   +D    + D +       VL E  
Sbjct: 92  KEFALDLE--------HHSYRSFLGLTCLVQISTRTED---FILDALELRGDLYVLNETF 140

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLS 119
            +  +  V H +  +   L+  F   + +     T   AR   L   +L  + +    + 
Sbjct: 141 TDPAIIKVLHGADSDVEWLQRDFG--LYLVNVFDTHQAARQLSLGRHSLDHLLKLYCNVD 198

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           + K  +  +                R  P           Y + D      I+ R+    
Sbjct: 199 ANKQYQLADW-------------RIRPLP------EEMLNYARDDTHYLLYIYDRVRTEL 239

Query: 180 S 180
            
Sbjct: 240 W 240


>gi|126735792|ref|ZP_01751537.1| ribonuclease D [Roseobacter sp. CCS2]
 gi|126714979|gb|EBA11845.1| ribonuclease D [Roseobacter sp. CCS2]
          Length = 385

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 52/185 (28%), Gaps = 41/185 (22%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMP 54
            + +D E     T                   + L    + D       L D + D +  
Sbjct: 22  YVTVDTEFLRERTYYS---------------KLCLVQLAYQDDSGADAVLLDPLVDGLSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L +  ++  V  V H +  +  +     +  +       T V A   G        GE
Sbjct: 67  EPLYDLFKDHGVVKVFHAARQDLEIF--YVDAGVIPEPLFDTQVAAMVCGF-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ +  K +  +     +             Y   DVT  R+I++ 
Sbjct: 118 QVGY--------ETLVRKITKSDLDKSSRFTDWSRRPLTDAQAK-YALADVTHLRDIYEH 168

Query: 175 LEPLS 179
           L    
Sbjct: 169 LSARL 173


>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
 gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
          Length = 1435

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 33/142 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDCV---- 48
           ET    DL   G+     D  + L A       +                   D      
Sbjct: 419 ETFVVFDLETTGLSA-VYDTIIELAAVKIKGGQIIDKFESFANPHHELSSTTIDLTGITD 477

Query: 49  ----HDPVMPQVLKEALENT-DVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLA 100
               + P + +V+++  E   D  +VAHN+ F+   L      + +D  +H  I TL LA
Sbjct: 478 DMVKNAPEVEEVIRKYHEWAGDHIMVAHNASFDMGFLYVCYKKYGIDT-VHATIDTLELA 536

Query: 101 RSNGL---PSALKAVGEALKLS 119
           R          L  + +   + 
Sbjct: 537 RMLHPELKNHRLNTLAKKFGIE 558


>gi|262212085|gb|ACY35659.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 37/140 (26%), Gaps = 7/140 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                   + K +  A  Y  G +           +        +   A  E  D  +  
Sbjct: 64  DKIGISHKLVKTVTYAFLYGAGDEKIGHSCDKLLSSQAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 483 RWMQENHPEHAIEDLFIGTA 502
               +   E        G  
Sbjct: 124 LEAIKKASERGFIKALDGRK 143


>gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96]
          Length = 1439

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 478 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 535

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 536 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 595

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 596 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 655

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 656 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 712

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 713 LVKIGDELGKL 723


>gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5]
          Length = 1439

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 478 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 535

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 536 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 595

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 596 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 655

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 656 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 712

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 713 LVKIGDELGKL 723


>gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704]
          Length = 1439

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 478 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 535

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 536 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 595

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 596 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 655

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 656 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 712

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 713 LVKIGDELGKL 723


>gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
          Length = 1440

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 479 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 536

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 537 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 596

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 597 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 656

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 657 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 713

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 714 LVKIGDELGKL 724


>gi|126665661|ref|ZP_01736642.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
 gi|126629595|gb|EBA00212.1| hypothetical protein MELB17_03812 [Marinobacter sp. ELB17]
          Length = 483

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 39/144 (27%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAF-----GFDDHPVELWDCVHDPVMPQVL-- 57
           F+D ET            +  E    I   F             +          + L  
Sbjct: 15  FLDLETTGG----SVATDRITE----IGIQFWRAGECVGQWQTLVNPKTRISPFIEQLTG 66

Query: 58  --------KEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
                       E+           V  VAHN+ F+   +K         + + + +CT+
Sbjct: 67  ISNAMVADAPLFEDIADELEQRLDGVVFVAHNARFDYGFVKGEFRRLG-RMFVAKVLCTV 125

Query: 98  VLARSNGLP---SALKAVGEALKL 118
            L+R          + A+ E   L
Sbjct: 126 KLSRRLYPEFRRHNMDALIERHGL 149


>gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 1571

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 38/162 (23%), Gaps = 38/162 (23%)

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
                   +         D  +VAHN+ F+   LK       + +     I T+ L++  
Sbjct: 541 QGQQTIDQVLPQFLAFAKDCVLVAHNASFDINFLKEKAKELKISLEPQPIIDTMALSQ-- 598

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                                    L+  F           R     +            
Sbjct: 599 --------------------RYFSNLLKYFS--------LKRLATFFKVKLEDHHR-ALA 629

Query: 164 DVTVTREIFKRLEPLSSKEQ--ELWYLDQTINDRGYCVDVAL 203
           D T T EIF ++    +            T  D    +D   
Sbjct: 630 DATATAEIFIKMIDQLADPTKDPKDEQVITFFDLQEKIDPKY 671


>gi|262212219|gb|ACY35726.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 10/143 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   I + G+ +V ADLAGIE R+L+          A                +   A  
Sbjct: 13  RELFIPTPGQVMVGADLAGIELRMLSH-------SLARYDNGRYADILLNGDIHQVNADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G +       +    L++ A   K     + + +A +    
Sbjct: 66  IGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 122

Query: 485 MQENHPEHAIEDLFIGTACERVK 507
           + E   + +           ++ 
Sbjct: 123 LLEAIKKASERGFIKALDGRKII 145


>gi|262212207|gb|ACY35720.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342263|gb|ACY54642.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEVRQAYIEAIDVL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             +     + +           ++ 
Sbjct: 121 DKLLGAIKKASERGFIKALDGRKII 145


>gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 1439

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 478 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 535

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 536 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 595

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 596 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 655

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 656 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 712

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 713 LVKIGDELGKL 723


>gi|188997343|ref|YP_001931594.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932410|gb|ACD67040.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 205

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 54/207 (26%), Gaps = 58/207 (28%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVC----------VILFAFGFDDHPVELW-----DCVHD 50
           +D ET      T   I   A  V           ++  + GF    +          V D
Sbjct: 14  VDLETTGLNPKTSEIIEIAAIKVEGSVITEKFHTLVKPSIGFIPEHITKLTGITNPLVID 73

Query: 51  PVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGL 105
               + +         +  I+AHN+ F+ + L          +  +  ICTLVLA     
Sbjct: 74  KPKIEQVFPHFLEFTKNSIIIAHNAKFDISFLNEASLQLTGKLIQNPVICTLVLANRLFP 133

Query: 106 ---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                +L  +     +   +                                        
Sbjct: 134 DLKSKSLTNLAYHFNIPYHRKHR-----------------------------------AL 158

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLD 189
            D  VT E+FK+        +    +D
Sbjct: 159 ADAEVTYELFKKFVDYLQNYKVDKVID 185


>gi|40063040|gb|AAR37896.1| ribonuclease D, putative [uncultured marine bacterium 560]
          Length = 358

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 78/258 (30%), Gaps = 50/258 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           L ID E     T                   + L          E  D +    + + L 
Sbjct: 34  LAIDTEFKRINTYY---------------PELCLVQIAT-TQFAECIDVLSINDL-EPLF 76

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +     + H++  +   L    +  IP+     T + A     P         L++
Sbjct: 77  EKLYHNKTEWIVHSARQDIEAL-YHLSKRIPV-SLFDTQIAASLLNYP---------LQI 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           S Q + E  + +    K  T      R  P          EY   DV      F++L+  
Sbjct: 126 SYQALTEILQDV-LLDKSYTRFDWTTRPLP------ANVVEYALDDVRYLLPNFEKLKHE 178

Query: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQI-------VDVERTKLDQELESLTYGLVS 231
            +  +++ +LD    +  + +D  L     +        +     K   +   L      
Sbjct: 179 LTISKKIQWLD---EETRFLLDQELYKPSIEQICYKTKGLSKLGKKFQDKAIKLVTWREK 235

Query: 232 SSRCLEKLKTWLFLETGL 249
           S++   K + W+  +  L
Sbjct: 236 SAQQKNKPRKWIMSDQKL 253


>gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis]
          Length = 1439

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 478 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 535

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 536 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 595

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 596 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 655

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 656 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 712

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 713 LVKIGDELGKL 723


>gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6]
          Length = 1439

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 478 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 535

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 536 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 595

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 596 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 655

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 656 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 712

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 713 LVKIGDELGKL 723


>gi|255014610|ref|ZP_05286736.1| putative exonuclease/DNA polymerase III epsilon c [Bacteroides sp.
           2_1_7]
 gi|293373643|ref|ZP_06619990.1| exonuclease [Bacteroides ovatus SD CMC 3f]
 gi|292631298|gb|EFF49929.1| exonuclease [Bacteroides ovatus SD CMC 3f]
          Length = 163

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 26/142 (18%)

Query: 1   MATLF-IDFETRSPIDLTKCGICK-YAEDVCVILFAFG-FDDHPVEL------------W 45
           M     IDFET +    + C +      D  +    +   +  P                
Sbjct: 1   MKDFAAIDFETANNQRSSVCSVGIVIVRDGEITDTFYSLINPEPNYYNYWCSQVHGLTRK 60

Query: 46  DCVHDPVMPQVLK---EALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
           D  + PV P+V +     +E   + +VAHN  F+   LK     + +D P + +  TL  
Sbjct: 61  DTDNAPVFPEVWRQIEPLIE--GLPLVAHNRPFDEGCLKAVFRVYQMDYPCYEFYDTLSA 118

Query: 100 ARS---NGLPSALKAVGEALKL 118
           +R          L  V EA   
Sbjct: 119 SRRALPCLPNHQLHTVAEACGY 140


>gi|242050364|ref|XP_002462926.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
 gi|241926303|gb|EER99447.1| hypothetical protein SORBIDRAFT_02g034580 [Sorghum bicolor]
          Length = 760

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 20/149 (13%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L      +    L D +    +  +L+    N+ +  + H +  +   L+   +  I + 
Sbjct: 53  LMQISTQNDD-YLIDTIALHDVMGILRPVFANSSICKIFHGADNDVLWLQR--DFHIYVV 109

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T                 +A +  S+  +    L+  +C+  T + +   +     
Sbjct: 110 NMFDT----------------AKACETLSKPQKSLAYLLEVYCEVTTDKTMQREDWRLRP 153

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                  EY + D      I   L     
Sbjct: 154 LTPE-MIEYARTDAHYLLYIANCLASELH 181


>gi|120603761|ref|YP_968161.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
            vulgaris DP4]
 gi|120563990|gb|ABM29734.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 1053

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 45/183 (24%)

Query: 2    ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGF-----DDHPVELWDCVHDPVMPQV 56
              + +D ETR      + G    A+    +  +        DD           P M   
Sbjct: 879  RVMVLDVETRRSA--AEVGGWHRADR---MGVSIAVLHDSADDSFTAY-PQDEVPAMLHR 932

Query: 57   LKEALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLV------LARSNGLPSAL 109
            L+EA       +V  N   F+ TVL    + D+     +  ++      L+       +L
Sbjct: 933  LREA-----DLVVGFNIVRFDYTVLSPFASFDLHTLPTLD-MLQKVKDRLSYRV----SL 982

Query: 110  KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
              + +A  L++ K  +G + +  + +G                   L  EYC+ DV +TR
Sbjct: 983  DNLAQA-TLNAPKSADGLQALRWWQEGR----------------LDLITEYCRKDVELTR 1025

Query: 170  EIF 172
            +++
Sbjct: 1026 DLY 1028


>gi|332024515|gb|EGI64713.1| Exosome component 10 [Acromyrmex echinatior]
          Length = 885

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 49/178 (27%), Gaps = 30/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E  S    T  GI    +   +             L D +        L E  
Sbjct: 284 KEIAVDLEHHSYR--TFQGITCLMQISTI---------QTDYLIDTLSLRSELYQLNEIF 332

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
               +  V H +  +   L+   +L + +     T   A+   LP     +  A      
Sbjct: 333 TKPSILKVFHGADMDILWLQR--DLSLYVVNMFDTHQAAKQLNLPY----LSLAY----- 381

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                  L+ ++C  + ++     +         L   Y + D      +   L+   
Sbjct: 382 -------LLNKYCGIDPNKHFQLADWRIRPLPLELMK-YAREDTHYLLYVKDMLKNEL 431


>gi|313242411|emb|CBY34559.1| unnamed protein product [Oikopleura dioica]
          Length = 420

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 43/176 (24%), Gaps = 34/176 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            L +D E             +Y        L           L        M + L E  
Sbjct: 277 ELAVDLE-----------HHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMYK-LNEVF 324

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEALKLSS 120
            N  +  + H S  +   L+  F   + +     T   A+   L   +L           
Sbjct: 325 ANPKIVKIFHGSRNDMLWLQRDFG--VYVVNLFDTFFAAKKLDLAKKSLD---------- 372

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                   L+  +CK    +     +             Y + D      ++ RL 
Sbjct: 373 -------YLLQHYCKIRLDKRFQLADWRMRPIPPN-MLRYARQDTHYLLYVYDRLR 420


>gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
 gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
          Length = 243

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET          +  + E   +I      +                     D 
Sbjct: 7   RQIVLDTETTGMNQ-----VGAHYEGHRIIEIG-AVEVINRRLTGRNFHVYLKPDRLVDP 60

Query: 41  PVELWDCVHDP---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDI 88
              +   + D           +     E +      +V HN+ F+   +   F     D+
Sbjct: 61  EAFMVHGISDDFLLGQPSFADVVDEFLEFIR--GAELVIHNAPFDIGFMDYEFAKLGRDL 118

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P     CT    LV+AR        +L A+    ++ + K      L+ 
Sbjct: 119 PKTETFCTITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLD 167


>gi|262342113|gb|ACY54567.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 36/143 (25%), Gaps = 7/143 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   I S+G  +  ADL+GIE R+L+          A   G            +   
Sbjct: 10  GRFRELFIPSKGLVMCGADLSGIELRMLSHYL-------ARFDGGRYAEILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R   K +  A  Y  G +           +        +  SA     D    
Sbjct: 63  ADKIGISRKQVKTVTYAFLYGAGDEKIGYSYDAQLSSTAAKRKGKEIRSAYVSAVDGLGD 122

Query: 482 CRWMQENHPEHAIEDLFIGTACE 504
                    E        G   +
Sbjct: 123 LLTAVAKAAERGFVKSIDGRKIK 145


>gi|229472301|gb|ACQ72665.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRTLFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRK 143


>gi|259907392|ref|YP_002647748.1| DNA polymerase II [Erwinia pyrifoliae Ep1/96]
 gi|224963014|emb|CAX54497.1| DNA polymerase II [Erwinia pyrifoliae Ep1/96]
 gi|283477225|emb|CAY73132.1| DNA polymerase II [Erwinia pyrifoliae DSM 12163]
          Length = 787

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 21/107 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPV-------ELWDCVHDPVM 53
             + +D ET    +L   G+   A  DV ++      ++          E  D    P +
Sbjct: 153 KWVSLDIETTRHGELYCIGLEGCAQRDVYMLG----PENGDASQINFHLEYVD--SRPQL 206

Query: 54  PQVLKEALE--NTDVTIVAHNS-YFERTVLKAC---FNLDIPIHRWI 94
            + L       + DV  +  N   F+  VL+     + + + + R  
Sbjct: 207 LEKLNAWFARHDPDVL-IGWNLVQFDLRVLQKHADRYGIPLRLGRGH 252


>gi|330752197|emb|CBL87155.1| protein with similarity to polynucleotidyl transferase [uncultured
           Sphingobacteria bacterium]
          Length = 244

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 49/183 (26%), Gaps = 54/183 (29%)

Query: 21  ICKYAEDVCVILFAF---GFDDHP----VELWDCVHDPVMPQVLKEALEN-----TDVTI 68
              YAE   +I  +     +D+      V+ +   ++  + +     L           +
Sbjct: 60  AAIYAEFNKIICISVGYLAYDEDEIVLKVKSYFGDNEKEILKEFSSLLNAHYNNLKKYYL 119

Query: 69  VAHNSY-FERTVLKACFNLD---------------IPIHRWICTLVL-------ARSNGL 105
             HN   F+  V+     +                  +   I TL +       +     
Sbjct: 120 CGHNIKEFDCPVICRRMLIHDLELPKLLNLSRKKSWQVRHLIDTLEMWKFGDYKSYI--- 176

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
             +L  +   L +SS K      L+++                           YC+ DV
Sbjct: 177 --SLDLLSAVLNISSPKTNLVGSLVSK--------------VYWEENDIERIKLYCEQDV 220

Query: 166 TVT 168
             T
Sbjct: 221 VTT 223


>gi|256112396|ref|ZP_05453317.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
          Length = 153

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 69  VAHNSYFERTV----LKACFNLDIPIHRWICTLVLARSNGL--PSALKAVGEALKLSSQK 122
           VAHN+ F+       L      +I     + TL LAR      P++L A+ +   + +  
Sbjct: 6   VAHNAMFDLGFINAELARLDQAEITSEHIVDTLALARRKHPIGPNSLDALCKRYGIDNSH 65

Query: 123 MEEGKELIA 131
                 L+ 
Sbjct: 66  RTLHGALLD 74


>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
 gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
          Length = 1433

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKIKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        ++   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGIEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|330998364|ref|ZP_08322188.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
 gi|329568470|gb|EGG50275.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
          Length = 164

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 46  DCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
           D  H    P+    +   +E   + +VAHN  F+   LK     + ++ P + + CTL  
Sbjct: 61  DTAHAAPFPEVWREIIPLIE--GLPLVAHNRPFDEGCLKAAFQAYGMEYPGYPFHCTLRA 118

Query: 100 ARSNG----LPSALKAVGEALKLS 119
           +R           L+ V       
Sbjct: 119 SRLAFGRDLPNHQLQTVALRCGYD 142


>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
 gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
          Length = 1438

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           D      +    KE + +     VAHN+ F+   +   +         +  I TL L+R+
Sbjct: 483 DAPEIDEVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERIGFGPSTNGVIDTLELSRT 540

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 541 INTEYGKHGLNFLAKKYGVE 560


>gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11]
          Length = 1439

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 478 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 535

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 536 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 595

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 596 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 655

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 656 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 712

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 713 LVKIGDELGKL 723


>gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188]
 gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188]
          Length = 1439

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 478 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 535

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 536 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 595

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 596 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 655

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 656 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 712

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 713 LVKIGDELGKL 723


>gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2]
          Length = 1439

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 478 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 535

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 536 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 595

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 596 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 655

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 656 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 712

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 713 LVKIGDELGKL 723


>gi|229472521|gb|ACQ72775.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRK 143


>gi|229472171|gb|ACQ72600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDEL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRK 143


>gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
 gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
          Length = 1421

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 15/127 (11%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIHR-WICTLVLARSN 103
           D      +     + + +   T++AHN+ F+   + K C +L I   R +I TL  AR+ 
Sbjct: 463 DMPKIEEVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCLDLRINPIRTYIDTLAFARAL 520

Query: 104 GLP---SALKAVGEALKLS--------SQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                   L  + +   ++              G+  I      E     +D N      
Sbjct: 521 EPHLKNHKLDTLTKKYNVNLFNHHRACDDARATGEVFICMVKDLEKRGVKFDININKIDS 580

Query: 153 AWRLFGE 159
            W +   
Sbjct: 581 DWSISKR 587


>gi|225075242|ref|ZP_03718441.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
           NRL30031/H210]
 gi|224953417|gb|EEG34626.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
           NRL30031/H210]
          Length = 245

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 53/177 (29%), Gaps = 32/177 (18%)

Query: 2   ATLFIDFETRSPID------LTKCGICKYAE---DVCVILF----------AFGFDDHPV 42
             + +D ET           +   G+        D  + L+          A       +
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPERDMPEEAAKVHGLTI 63

Query: 43  ELWDCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLK---ACFN---LDIPIHRW 93
           E+ +  + P   Q    + + L      ++ HN+ F+   L           ++    + 
Sbjct: 64  EVLEAKNAPPFAQVGKQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCKV 121

Query: 94  ICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
             TL +AR       ++L A+     +   K      LI     GE +  +  +   
Sbjct: 122 TDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQFD 178


>gi|262212153|gb|ACY35693.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212177|gb|ACY35705.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGP 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|261364618|ref|ZP_05977501.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
 gi|288567207|gb|EFC88767.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 48/186 (25%), Gaps = 50/186 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFG----FD---DHPVELWDCVHDPVMP 54
             + +D ET             YAE+    L  F      +                 MP
Sbjct: 3   RQIILDTETTGL----------YAENGD-RLVEFAGLEMVNRQMTGRFLHLYVHPQRDMP 51

Query: 55  QVL-------KEALENTDVT---IVA--------------HNSYFERTVLK---ACFN-- 85
           +          + LE  +      V               HN+ F+   L          
Sbjct: 52  EEAARVHGLTIDVLEEKNAPPFAKVGQEISEFIRGAELIIHNAKFDVGFLNMEFRRMGLP 111

Query: 86  -LDIPIHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
            ++        TL +AR       ++L A+   L +   K      LI     GE +  +
Sbjct: 112 SVEELGCEITDTLAMAREMFPGQKASLDALCNRLSIDRSKRVLHGALIDCELLGEVYLAM 171

Query: 143 YDRNKP 148
             +   
Sbjct: 172 TRQQFD 177


>gi|262342303|gb|ACY54662.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDVIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRK 143


>gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
 gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
          Length = 473

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 46  DCVHDPVMPQVLKEALE--NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           D    P + + +  A    + D  +VAHN+ F+  +L+       +    H  + T++L+
Sbjct: 330 DVADAPSI-EQVIPAFHHFSKDAVLVAHNAPFDIGLLRQQERATGIKWD-HPVLDTVLLS 387

Query: 101 RS---NGLPSALKAVGEAL 116
                     +L A+ + L
Sbjct: 388 AVVFGISQEHSLDALCQRL 406


>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
 gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
          Length = 1433

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------------- 43
           ET    D+   G+     D  + L A       +                          
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITD 474

Query: 44  --LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
             L D      + +  +E + +   T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 475 DMLIDAPEVDEVFKKFEEWMGD--HTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIE 556


>gi|313675161|ref|YP_004053157.1| 3'-5' exonuclease, polb [Marivirga tractuosa DSM 4126]
 gi|312941859|gb|ADR21049.1| 3'-5' exonuclease, PolB [Marivirga tractuosa DSM 4126]
          Length = 233

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 45/229 (19%)

Query: 1   MATLFIDFET------RSPIDLTKCGI----------------------CKYAEDVCVIL 32
           MA LFID ET       + +   +  +                        YAE   +++
Sbjct: 1   MAILFIDVETVPQAENYADLSEKEQSLWQHKASFLTKNEETAEEIYPKAGIYAEFGKIVV 60

Query: 33  FAFGF-----DDHPVELWDCVHDP--VMPQVLKEAL---ENTDVTIVAHNSY-FERT-VL 80
            + G+     ++  + +    ++    +   L + L   ++T+  I  HN   F+   + 
Sbjct: 61  VSLGWMFGKENNRKLRVTTLANENEAQLLIELIQILQKVDDTNSVICGHNIKEFDIPYIC 120

Query: 81  KACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGE--- 137
           +      + +   +    + +    P  L  +        +   +   L   F       
Sbjct: 121 RRILINGLKLPSILDVSSM-KPWQTPY-LDTLEMWKFGDRKHYTKLDLLAHIFDLPTSKD 178

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
             +              +   EYC+ DV +T +++ ++      +++  
Sbjct: 179 DIDGSQVYEVYYKEGDLKRIAEYCEKDVVLTCQLYLKMNGQPVLQEKQI 227


>gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
 gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|229472267|gb|ACQ72648.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E    +   G  
Sbjct: 121 DKPLAAIKKASERGFIEAIDGRK 143


>gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis TUSoD Ef11]
 gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
 gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis DAPTO 516]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|146294019|ref|YP_001184443.1| 3'-5' exonuclease [Shewanella putrefaciens CN-32]
 gi|145565709|gb|ABP76644.1| 3'-5' exonuclease [Shewanella putrefaciens CN-32]
          Length = 298

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 55/212 (25%), Gaps = 30/212 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             +  D ETR           +  +   + L      D    L+          +LK  L
Sbjct: 114 RVIGFDTETR-------ASFERGVQHP-LSLIQIATHD-TCYLFQHALLAERLGLLKPVL 164

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+ ++  V      +   L   + +++                L   L  +G   ++ ++
Sbjct: 165 EDENILKVGVGLRSDGQALTREWGINVTPR-----------LDLNWVLAQLGAGKEMGTR 213

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           ++     L  R  K +       +  P           Y   D             L  K
Sbjct: 214 QLVAT-LLQKRIDKPKKVTLSNWQQVPLTS----TQIVYAALDA---LAAQHCFSELIDK 265

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
            +  +    ++      +   L   L    + 
Sbjct: 266 LKPFY--LASLEANTQLLTQNLTVRLASYFEQ 295


>gi|229472443|gb|ACQ72736.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLARYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRK 143


>gi|229472421|gb|ACQ72725.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRK 143


>gi|229472175|gb|ACQ72602.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472207|gb|ACQ72618.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 180

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S G+ +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPGQIMVGADLAGIELRMLSHFL-------AKYDQGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +    L++ A   K       + DA + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKQLSSSAAKKKGKEIRTAYVDAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + +   + +           ++ 
Sbjct: 120 LDKLLDAIKKASERGFIKALDGRKII 145


>gi|332702446|ref|ZP_08422534.1| Protein of unknown function DUF1998 [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332552595|gb|EGJ49639.1| Protein of unknown function DUF1998 [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1044

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 52/174 (29%), Gaps = 27/174 (15%)

Query: 2    ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
              + +D ETR      + G    A D   +  +                      L E L
Sbjct: 866  RFVVLDVETRRSA--AEVGGWHRARD---MGVSVAVAYDSTTDVFHTFGQDELDGLCELL 920

Query: 62   ENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLA--RSNGLPSALKAVGEALKL 118
             +    +V  N   F+  VL  C   D    + +  ++    R  G   AL  +  A   
Sbjct: 921  -SGVELVVGFNVRRFDYAVLSGCVEYDFLRLKTLD-MLEHVKRRLGYRLALDHLASA--- 975

Query: 119  SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                +  GK            E               L  EYC+ DV +TR+++
Sbjct: 976  ---TLGAGKSADGLQALAWWKEGRV-----------DLIAEYCRADVRITRDLY 1015


>gi|326332250|ref|ZP_08198530.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
 gi|325949956|gb|EGD42016.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
          Length = 422

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 55/181 (30%), Gaps = 29/181 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           ID  +    +Y+      L     +   + L D +    M Q L EALE      + H +
Sbjct: 56  IDAERASGYRYSNRAY--LIQLRREGSGIWLIDPIELTTM-QPLVEALE--GTEWILHAA 110

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLSSQKMEEGKELIA 131
             +   L    +L +       T +  R  G P   L  + E  L  +  K     +   
Sbjct: 111 TQDLPCLS---DLGLHPAALFDTELAGRLLGYPRVGLGTLVETVLGFTMLKEHSAADW-- 165

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                        R  P        + EY   DV V  E+ + L      + +  +  Q 
Sbjct: 166 -----------STRPLP------DAWLEYAALDVEVLVELREALAAELVAQGKDAWARQE 208

Query: 192 I 192
            
Sbjct: 209 F 209


>gi|157368976|ref|YP_001476965.1| DNA polymerase II [Serratia proteamaculans 568]
 gi|157320740|gb|ABV39837.1| DNA-directed DNA polymerase [Serratia proteamaculans 568]
          Length = 787

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 11/100 (11%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV---HDPVMPQVLK 58
             + +D ET +  +L    +        V +       +    +D       P M + L 
Sbjct: 153 KLVSLDIETTAHGELYSIALEG-CGQRQVYMLGPANGGNEALDFDLEYCVSRPQMLERLN 211

Query: 59  EALE--NTDVTIVAHNS-YFERTVLKAC---FNLDIPIHR 92
           + LE  + D   +  N   F+  VL+     + + + + R
Sbjct: 212 QWLERHDPDAI-IGWNLVQFDLRVLQKHAERYQIPLKLGR 250


>gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis PC1.1]
 gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000]
 gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141]
 gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244]
 gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031]
 gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043]
 gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312]
 gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645]
 gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341]
 gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346]
 gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis 62]
 gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF]
 gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|209519136|ref|ZP_03267941.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
 gi|209500436|gb|EEA00487.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
          Length = 382

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           D VH     + +  AL         VAHN+ F+R  L+       L       +CT+ L+
Sbjct: 71  DMVHGAPTFESIAPALYERLNGKLFVAHNASFDRGFLRSEFRRAGLAFDP-DVLCTVRLS 129

Query: 101 RSNGLP---SALKAVGEALKL 118
           R+         L A+ E   L
Sbjct: 130 RALFPGEKRHGLDALVERHAL 150


>gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
 gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
          Length = 240

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHR 92
           A        E     + P   ++ +  +E      +VAHN+ F+ + +   F L  P   
Sbjct: 65  AIAVHGISNEYV--ANKPKFAEIAQSFIEFIDGAEVVAHNASFDISFMDHEFGLLQPKGP 122

Query: 93  -------WICTLVLARSNGLPS--ALKAVGEALKLSS 120
                   + TL +A+         L A+ +   + +
Sbjct: 123 KTADICAILDTLAIAKFLHPGQKNNLDALCKRYGIDN 159


>gi|145485444|ref|XP_001428730.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395818|emb|CAK61332.1| unnamed protein product [Paramecium tetraurelia]
          Length = 669

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 49/187 (26%), Gaps = 29/187 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E      ++  G+          L           +        +  +L     
Sbjct: 219 EIAVDLE--HNHSISYLGVTC--------LIQLSTRTQDYIIDPFPLWKQLGDMLSVVFT 268

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  +  V H +  +   L+  F L I       T   ++   L                 
Sbjct: 269 NPRIVKVFHGADNDVQWLQRDFGLYI--VNLFDTFQASKELLLMQN-------------- 312

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
               + L++ +CK  T +     +      +     +Y + D      I+ R+     K 
Sbjct: 313 --SFQFLLSEYCKKSTDKTYQTADWTQRPLS-DEMIKYAQIDTHYLLYIYDRMRQDLKKL 369

Query: 183 QELWYLD 189
            +     
Sbjct: 370 NKPNENL 376


>gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1410

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 56/187 (29%), Gaps = 27/187 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYA---EDVCVIL-----------FAFGFDDHPVELWDCVH 49
           +  D ET     +    I   A   ++  ++             +           D V 
Sbjct: 400 VVFDIETTGLSSINDNIIEIGAVKIKNFQIVDTFETFVNPQVHISKFITKLTGITDDMVK 459

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA---R 101
           +    + +     +   D  +VAHN+ F+ T +K       +++  +  + TL L+    
Sbjct: 460 EYPSIEEILPKFLDFIKDSILVAHNANFDVTFIKTKARNLGMEVD-NPVLDTLELSRHMY 518

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH-REAWRLFGEY 160
            N     L  V + L +S   +E     +                   +  E      +Y
Sbjct: 519 ENLKNYKLDTVAQHLGVS---LENHHRAVDDAKATAEIFIKSINKLKENGIEKVNEINDY 575

Query: 161 CKGDVTV 167
            K  V +
Sbjct: 576 LKNKVDI 582


>gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
 gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC
           33386]
          Length = 1421

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 46/141 (32%), Gaps = 23/141 (16%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH---PVELW-------DCV 48
            +  D ET         + + G  K      +  F+   +     P E+        D V
Sbjct: 399 YIIFDIETTGFDPYKDKIIEIGAVKLKGRNIIDRFSAFVNPEVPIPEEIIKLTNITDDMV 458

Query: 49  HDPVMPQVLKE-ALE-NTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSN 103
            D  +   +    LE   D T+VAHN+ F+   L        L+      I TL  AR  
Sbjct: 459 KDAELIDTVLPRFLEFCGDCTMVAHNAKFDVGFLTQKARQLELEFLP-SVIDTLYWARVL 517

Query: 104 GLPS---ALKAVGEALKLSSQ 121
                   LKA+     +S  
Sbjct: 518 ITDLKRFNLKALANYFNISLD 538


>gi|290956585|ref|YP_003487767.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260646111|emb|CBG69204.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 397

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 29/181 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           +D  +    +Y +   ++      +      +            L EAL  + V  V H 
Sbjct: 34  VDAERASGYRYGQRAYLV--QLRREGAGTALIDPVACPD--LSGLGEAL--SGVEWVLHA 87

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L+    +D+   R   T +  R  G P   L A+ E   +    +E+G   + 
Sbjct: 88  ATQDLPCLRE---IDMVPTRIFDTELAGRLAGFPRVGLGAMVE--GVLGYVLEKGHSAVD 142

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              +                E W     Y   DV +  ++   LE    ++ +L +  Q 
Sbjct: 143 WSTRPL-------------PEPW---LRYAALDVELLVDLRDALEKELDRQGKLEWARQE 186

Query: 192 I 192
            
Sbjct: 187 F 187


>gi|71083046|ref|YP_265765.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762529|ref|ZP_01264494.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062159|gb|AAZ21162.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718331|gb|EAS84981.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
          Length = 223

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 28/157 (17%)

Query: 1   MATLFIDFETRSP-------------IDLTKCGICKYAEDVCV---ILFAFGFDDHPVEL 44
           M  + +D ET                I+L      K      +      +    +     
Sbjct: 1   MKEVILDTETTGLSVRDGHRIVEIGCIELENLIPTKNRFHCYLNPERKVSEKALEVHGYT 60

Query: 45  --WDCVHDP--VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRWICT 96
             +   H     +       +EN  +  V HN+ F+ + L    +L     +     + T
Sbjct: 61  DEFLSTHKKFGDIVDEFLVFIENKRL--VIHNAEFDLSHLNNELSLLGKEKLNSENVVDT 118

Query: 97  LVLAR--SNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           L LAR    G P +L A+ +  ++ + K  +   LI 
Sbjct: 119 LALARDKFPGSPISLDALCKRYRIDNSKRTQHTALID 155


>gi|85373619|ref|YP_457681.1| ribonuclease D [Erythrobacter litoralis HTCC2594]
 gi|84786702|gb|ABC62884.1| ribonuclease D [Erythrobacter litoralis HTCC2594]
          Length = 401

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 40/195 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + ID E     T                   + L   G ++      D + D +  Q L 
Sbjct: 26  VCIDTEFMRENTYW---------------PELCLIQIG-NEEEAAAVDPLADGIDLQPLL 69

Query: 59  EAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           + + EN D+  V H    +  ++               T +          + A+ ++ +
Sbjct: 70  DLMCENEDILKVFHAGGQDVEIVYNLTGKT--PFPIFDTQIA---------MMAISQSEQ 118

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +    + E   L     KG        R             EY  GDVT   +IF ++  
Sbjct: 119 IGYANLVE-SWLNKTIDKGARFTDWSRRPLT------DRQIEYAIGDVTYLAKIFPKILN 171

Query: 178 LSSKEQELWYLDQTI 192
              K     +L+  +
Sbjct: 172 KLVKTGRGAWLNAEM 186


>gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583]
 gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecalis V583]
 gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B]
 gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
 gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
          Length = 1451

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 18/251 (7%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLVLARSNGL 105
            +  + ++ KE   +    +VAHN+ F+   L   +    IP   +  I TL L+R    
Sbjct: 490 SEEEVLRMFKEF--SEGTILVAHNASFDMGFLNTSYGKHGIPEAANPVIDTLELSRFLYP 547

Query: 106 P---SALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 L  + +   ++     +     E     C     E   + +   H +  R  GE
Sbjct: 548 HFKSHRLNTLSKKFGVNLEQHHRAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGE 607

Query: 160 ---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y +        +      L +  + +   +     R   +  +    L + + +   
Sbjct: 608 GDSYKRARPFHATILATTQAGLKNLFKLISMSNVDYFFRVPRIPRSQLSKLREGLLIGSA 667

Query: 217 KLDQELESLTYGL-VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQ 275
             + E+        V  ++   K   ++ +   +          Q ++ +   L      
Sbjct: 668 CSNGEIFEAMMQKGVEEAKNRAKFYDYIEV---MPKPVYAPLIEQELVKNEADLEEIISN 724

Query: 276 VFNNRMRASRS 286
           +        + 
Sbjct: 725 LVKIGDELGKL 735


>gi|259501466|ref|ZP_05744368.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners DSM 13335]
 gi|302191565|ref|ZP_07267819.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus iners AB-1]
 gi|309803902|ref|ZP_07697986.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 11V1-d]
 gi|309804516|ref|ZP_07698582.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|309806946|ref|ZP_07700929.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|309808365|ref|ZP_07702268.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|309809203|ref|ZP_07703075.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|325912750|ref|ZP_08175130.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|329919994|ref|ZP_08276872.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 1401G]
 gi|259167134|gb|EEW51629.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           iners DSM 13335]
 gi|308163997|gb|EFO66260.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 11V1-d]
 gi|308166169|gb|EFO68386.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 09V1-c]
 gi|308166670|gb|EFO68866.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 03V1-b]
 gi|308168428|gb|EFO70543.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LactinV 01V1-a]
 gi|308170503|gb|EFO72524.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 2503V10-D]
 gi|325477964|gb|EGC81096.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners UPII 60-B]
 gi|328936765|gb|EGG33205.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners SPIN 1401G]
          Length = 177

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 26/181 (14%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVIL---FAFGFDDHPVELW---DC 47
           M    +DFET      S   L    +   K  +    ++     F  ++  +      D 
Sbjct: 1   MNFTAMDFETANRHYDSACSLALVLVRDNKIIDSFYTVINPQMPFDKNNIKIHGITANDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
              P M +V      L    + +VAHN+ F+  V+K     +N+  P +  I TL  +R+
Sbjct: 61  KDAPTMDEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTLATSRA 120

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    L  V   L +            A        E L  +N+    E  + F +
Sbjct: 121 LMPNLKNYRLDTVSNQLNID-----LWHHHNALSDSEACAEILIKQNQQFGDEQIKNFIK 175

Query: 160 Y 160
           Y
Sbjct: 176 Y 176


>gi|262342247|gb|ACY54634.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRK 143


>gi|262212349|gb|ACY35791.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDELLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRK 143


>gi|229472169|gb|ACQ72599.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472187|gb|ACQ72608.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472201|gb|ACQ72615.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472299|gb|ACQ72664.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472313|gb|ACQ72671.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472317|gb|ACQ72673.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472413|gb|ACQ72721.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRK 143


>gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 203

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 43/149 (28%), Gaps = 31/149 (20%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-DVCVILFAFGFDDHP 41
           M  + +D ET                       L+     +Y + D  +   A       
Sbjct: 1   MRQIVLDTETTGLEPQQGHRIIEIGCVEMIDRRLSGNNFHQYLQPDREIDAGAIEVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHR----W 93
            E   D      +     + +      ++ HN+ F+   L         D P        
Sbjct: 61  NEFLADKPRFADLAADFLDYIR--GAELIIHNAPFDVGFLNHELQLMGADSPPIGELCAV 118

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSS 120
           I TLV+A+        +L A+ +   + +
Sbjct: 119 IDTLVMAKKMHPGQRNSLDALCKRYDVDN 147


>gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
 gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
          Length = 244

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 43/167 (25%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFG---------------------FDDH 40
             + +D ET     +   G   Y     +I                           D  
Sbjct: 8   RQIILDTETTG---MNTAGGPVYLGH-RIIEIGCVEVINRKLTGNHYHVYIKPDRLVDPE 63

Query: 41  PVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIP 89
            +++     +          +     E +      ++AHN+ F+ + +   F    L+  
Sbjct: 64  AIQVHGITDEFLRDKPSFSQIADEFLEFIR--GAELIAHNAPFDVSFMDYEFSKLGLNFK 121

Query: 90  IHR---WICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                    TL +AR         L  + +   + +        L+ 
Sbjct: 122 TADICTITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLD 168


>gi|262212113|gb|ACY35673.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEVRQAYIEAIDVL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             +     + +           ++ 
Sbjct: 121 DKLLGAIKKASERGFIKALDGRKII 145


>gi|229472415|gb|ACQ72722.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRK 143


>gi|145614196|ref|XP_364068.2| hypothetical protein MGG_08913 [Magnaporthe oryzae 70-15]
 gi|145021143|gb|EDK05272.1| hypothetical protein MGG_08913 [Magnaporthe oryzae 70-15]
          Length = 1103

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 98/356 (27%), Gaps = 22/356 (6%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH-TLNQIVDVERTKLDQELESL 225
           +   +     PL   ++  W      NDR   ++  +    ++   + +          L
Sbjct: 477 LLLRLAWDGHPLVWSDKYGWTFRAERNDREKYINRQMIECDMSDETNEKLRTDGGIYFKL 536

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR-MRAS 284
            +     +RC   +           L     +  +  L  N           + R    S
Sbjct: 537 PHKDGPLARCANPMAKGYLGYFESGLLSSEYSYAKEALEMNAS----CSYWISARDRIMS 592

Query: 285 RSAVLKLN-TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQII 343
           +  V +   +   A  S  + R T +   +            PQ +P  + +   ++   
Sbjct: 593 QLVVYENEVSAPTASASTKKSRNTKRTPQSET----KSGFILPQIIPMGTITRRAVENTW 648

Query: 344 THLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
                +  +       +   +++ V A  G   V AD+   E   +A + G+        
Sbjct: 649 LTASNAKKN------RVGSELKAMVKAPPGYCFVGADVDSEEL-WIASVVGDATFKLHGG 701

Query: 404 TGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNL 459
                      ++        T       R   KV      Y  G K   ++      NL
Sbjct: 702 NAIGFMTLEGTKAAGTDLHSRTASILGITRNDAKVFNYGRIYGAGLKFAGQLLRQFNPNL 761

Query: 460 NTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           +    +   +      + A+   + + +        + F+    E   +  R +  
Sbjct: 762 SEQETVETASKLYAATKGAKTNRKALYKRPFWRGGTESFVFNKLEEFAEQERPRTP 817


>gi|221195203|ref|ZP_03568259.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
 gi|221185106|gb|EEE17497.1| ATP-dependent DNA helicase [Atopobium rimae ATCC 49626]
          Length = 1031

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 23/137 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVIL------FAFGFDDH---PVELWDCVH--D 50
             + +D ET        CG+ + +    +        F    D     P E+    H  D
Sbjct: 63  DIVVLDTETTGL-SFKTCGLIEISA-AKISGREIVERFETFVDPRKPIPPEIVALTHITD 120

Query: 51  PVMP-----QVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
             +      +    AL +    + ++AHN+ F+RT ++         + WI TL L+R  
Sbjct: 121 EDVAGAPRAKEAVSALADFVGGLPVLAHNAVFDRTFIERVPGGHEVSNTWIDTLSLSRIA 180

Query: 104 GL---PSALKAVGEALK 117
                   L  + EA  
Sbjct: 181 LPRLSSHKLSRMAEAFG 197


>gi|164688423|ref|ZP_02212451.1| hypothetical protein CLOBAR_02068 [Clostridium bartlettii DSM
           16795]
 gi|164602836|gb|EDQ96301.1| hypothetical protein CLOBAR_02068 [Clostridium bartlettii DSM
           16795]
          Length = 961

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 56/207 (27%), Gaps = 21/207 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PS 107
             +     E +E+    I+ HN  FE   L+     ++  ++++ ++ LA          
Sbjct: 8   EEIKDDFLEFIEDK--IIICHNKQFEEKFLEFHIG-ELK-NKFLDSMELACVLEPFQREF 63

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L  + +   ++  K +E    ++                 +  E       Y      +
Sbjct: 64  NLDYLKKQ--ITKDKNDEIHRALSDTIDTIDVVNALILRFKDRLEKEDKLTLYP-----L 116

Query: 168 TREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           T EI   L     +  E   +     D              +    +    ++E+  L  
Sbjct: 117 TFEIDSYLNKFKLENWEWSDIINNA-DFSLKEKTKTVFEEEKNQTKKSNLKEEEIYKLLG 175

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDL 254
                       +  L  +     +  
Sbjct: 176 ------DNKNHYEELLKEKDIWDSKKG 196


>gi|229472405|gb|ACQ72717.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLARYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRK 143


>gi|167855622|ref|ZP_02478381.1| ribonuclease D [Haemophilus parasuis 29755]
 gi|167853249|gb|EDS24504.1| ribonuclease D [Haemophilus parasuis 29755]
          Length = 388

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 54/195 (27%), Gaps = 40/195 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L    FD   V L D +         
Sbjct: 41  VIALDTEFVRTRTYY---------------PKLGLIQL-FDGKQVYLIDPLSITDF-SPF 83

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
              L N +V  V H    +  V +  F         + T V+A   G+  ++     AL 
Sbjct: 84  TALLTNENVLKVLHACSEDLEVFQHYF--KQLPQPMLDTQVMAGFVGIGISIGFAKLALH 141

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               ++++G        +  +                 +  +Y   DV     I+ +L  
Sbjct: 142 YLEVELDKGASRTDWLSRPLS----------------EIQLQYACADVWYLLPIYHKLAE 185

Query: 178 LSSKEQELWYLDQTI 192
             +K      + +  
Sbjct: 186 DLAKTLWQTAVVEEC 200


>gi|91788057|ref|YP_549009.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91697282|gb|ABE44111.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 234

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 36/162 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFA---------FGFDDH--------PVE 43
           M  + +D ET     L+     +  E  CV L           F  +           V 
Sbjct: 1   MRQIVLDTETTG---LSAENGDRIIEIGCVELVGRKLTGNNRHFYLNPERDSHEDALKVH 57

Query: 44  LW------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF------NLDIPIH 91
                   D      +   L E L+  ++ I  HN+ F+ + L           +   + 
Sbjct: 58  GISNEFLKDKPKFAAVADELLEYLQGAEIII--HNAPFDVSFLNKELELIGRDPIRHCVA 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           +   +L++A+        +L A+ + L + +        L+ 
Sbjct: 116 KVTDSLMMAKELFPGKRNSLDALCDRLDVDNSGRTLHGALLD 157


>gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 684

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 27/142 (19%)

Query: 4   LFIDFETRSP---IDLTKCGICKYAEDVCVI--------------LFAFGFDD-HPVELW 45
           + +D ET       D           +  ++               F   F    P  L 
Sbjct: 102 VVVDTETTGLRPGPDRVIEVAGVRMRNGEILDTFQSLVHPERRIPPFIVRFTGISPEMLA 161

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARS 102
           D      +       +E    T+V HN  F+   L        L  P+     T++L+R 
Sbjct: 162 DAPKARDIMPDFLRFIE--GATLVGHNLSFDVNFLTHEAQLLGLPFPVEGL-DTILLSRR 218

Query: 103 NGLPS---ALKAVGEALKLSSQ 121
                    L  V + L++ + 
Sbjct: 219 LLPGLKRFKLDMVAQYLQIQTH 240


>gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
 gi|255919987|gb|ACU35498.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
          Length = 414

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 36/191 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALE 62
           + +D E        +    +Y++   ++      +    V +        +   L EALE
Sbjct: 50  VAVDTE--------RASGYRYSQRAYLV--QLRREGAGTVLVDPIALGGRL-DPLVEALE 98

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQ 121
                 V H +  +   L     L +       T +  R  G    AL  + E L     
Sbjct: 99  --GTEWVLHAASQDLPCLAE---LGLTPSALFDTELAGRLAGFERVALGTLVELL----- 148

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
               G  L       E      D ++      W     Y   DV +  ++   LE    +
Sbjct: 149 ---LGYRL-------EKGHGAADWSRRPLPADW---LNYAALDVELLVQLRDVLEEELRQ 195

Query: 182 EQELWYLDQTI 192
           + +L +  +  
Sbjct: 196 QGKLEWALEEF 206


>gi|238762660|ref|ZP_04623629.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC
           33638]
 gi|238698965|gb|EEP91713.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC
           33638]
          Length = 259

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 46/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 12  RQIVLDTETTG---MNKLGVHY--EGHKIIEIG-AVEVINRRLTGRNFHVYIKPDRLVDP 65

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDI 88
                  + D  +    K    +             +V HN+ F+   +         DI
Sbjct: 66  EAYGVHGISDEFLAD--KPTFADIASEFLEFIRGAELVIHNAAFDIGFMDYEFRMLQQDI 123

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P     CT    L+LAR         L A+ +   + + K      L+ 
Sbjct: 124 PKTETFCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLD 172


>gi|229472429|gb|ACQ72729.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGCSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRK 143


>gi|229472411|gb|ACQ72720.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472513|gb|ACQ72771.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472523|gb|ACQ72776.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRK 143


>gi|262342251|gb|ACY54636.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 10/143 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   I + G+ +V ADLAGIE R+L+          A                +   A  
Sbjct: 13  RELFIPTPGQVMVGADLAGIELRMLSH-------SLARYDNGRYADILLNGDIHQVNADK 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G +       +    L++ A   K     + + +A +    
Sbjct: 66  IGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGLDK 122

Query: 485 MQENHPEHAIEDLFIGTACERVK 507
           + E   + +           ++ 
Sbjct: 123 LLEAIKKASERGFIKALDGRKII 145


>gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
 gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
           700633]
          Length = 1441

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP---SALKAVGEALK 117
            D  +VAHN+ F+   L   +    L+      I TL L+R          L  + +   
Sbjct: 503 KDTILVAHNASFDMGFLNTGYEKEGLEKTTQPVIDTLELSRLLHPHLKSHRLNTLAKRYN 562

Query: 118 L 118
           +
Sbjct: 563 V 563


>gi|237654602|ref|YP_002890916.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|237625849|gb|ACR02539.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 502

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 46/143 (32%), Gaps = 38/143 (26%)

Query: 5   FIDFETRSPI----DLTKCGICKYAEDV-------------------CVILFAFGFDDHP 41
           F+D ET         +T+ GI +  ED                     +       DD  
Sbjct: 14  FVDIETTGGPAQRESITEIGIVQVDEDGVREWSTLVRPASRIPETIQRLTGI----DDDM 69

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
           V   D      +   + + L       VAHN+ F+   L+       LD+   + +CT+ 
Sbjct: 70  VA--DAPRFEDIADEVFDRL--DGRLFVAHNARFDHGHLRAAFRRAGLDMRP-QVLCTVK 124

Query: 99  LARSNGLP---SALKAVGEALKL 118
           L+R          L  + E   L
Sbjct: 125 LSRRLFPDHRRHGLDHLIERHGL 147


>gi|90020985|ref|YP_526812.1| ribonuclease D [Saccharophagus degradans 2-40]
 gi|89950585|gb|ABD80600.1| ribonuclease D [Saccharophagus degradans 2-40]
          Length = 386

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 61/264 (23%), Gaps = 45/264 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQVLKE 59
             L +D E      +        A      L     +D            D   P    E
Sbjct: 30  KLLAVDTE-----FMRSQTYYPIAG-----LIQ--VNDGEANYLLDPTTIDDFSP--FAE 75

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L + D+    H+   +  V    F       R   T +      L  ++        + 
Sbjct: 76  ILVDDDIIKAIHSCSEDLEVFYHSFGFL--PQRLFDTQIAGAFVNLGYSMGFARMVQGVL 133

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             ++ + +       +  +                     Y   DV     +  +L    
Sbjct: 134 GVELPKTETRSDWLQRPLSVAQK----------------HYAALDVEYLYLLAGKLLTEL 177

Query: 180 SKEQELWYLDQT----INDRGYCVDVAL----AHTLNQIVDVERTKLDQ--ELESLTYGL 229
             ++ L ++       + +    +D  L         ++   +        E   LT   
Sbjct: 178 KAKERLDWVFGEGKTIVKNFSDNLDPKLSYLRVKNAWKLNAKQLAIFQNLCEWRELTAQK 237

Query: 230 VSSSRCLEKLKTWLFLETGLHLED 253
               R     +  LF    L    
Sbjct: 238 RDKPRNRIVKENTLFA-MALKRPK 260


>gi|327392695|dbj|BAK10117.1| DNA polymerase II PolB [Pantoea ananatis AJ13355]
          Length = 803

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 63/218 (28%), Gaps = 56/218 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-----ELWDCVHDPVMPQV 56
             + +D ET    +L   G+        V +      +        EL      P + + 
Sbjct: 170 KWVSLDIETTQHGELYCIGLEG-CGQRQVFMLGP--PNGDASELDFELIYLESRPQLLEA 226

Query: 57  LKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------------ 92
           L       + DV  +  N   F+  VL+     + + + + R                  
Sbjct: 227 LNRWFADNDPDVI-IGWNVVQFDLRVLQKHADRYGIPLRLGRQQATLEWREHGFKPGVFF 285

Query: 93  -------WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                   I     + +        +L++V + L      + EGK +   + + E     
Sbjct: 286 AQATGRLIIDGIDALKSAFWDFPSFSLESVSQQL------LGEGKAIDNPWQRMEEINWR 339

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           +  +KP           Y   D  +   IF + E +  
Sbjct: 340 FANDKP-------ALARYNLKDCELVTRIFHKTEIMPF 370


>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
 gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
          Length = 331

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHD------- 50
           +D ET        +    + +      V      L     D  PV +     +       
Sbjct: 22  VDVETTGLARDDRIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIHGLTSEVLEGAPL 81

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP 106
            P +   L   L      +VAHN+ F+ ++L   +    +  P+ R +CT+ LA+   LP
Sbjct: 82  FPEIAGELSRRL--DGRVLVAHNAVFDWSMLAREYARAGITAPVRRRLCTIALAKELALP 139

Query: 107 ---SALKAVGEALKLSS 120
                L+ +     +  
Sbjct: 140 LPNHKLETLAAHFGVEQ 156


>gi|229472193|gb|ACQ72611.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472303|gb|ACQ72666.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRK 143


>gi|268592015|ref|ZP_06126236.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
 gi|291312407|gb|EFE52860.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
          Length = 247

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 55/206 (26%), Gaps = 53/206 (25%)

Query: 2   ATLFIDFETRSPI---------DLTKCGI-------------CKYA--------EDVCVI 31
             + +D ET             ++ + G                Y         E   V 
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAFEVH 66

Query: 32  LFAFGF-DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLD 87
             +  F  D PV          +     E +      +V HN+ F+   +       N  
Sbjct: 67  GISDEFLQDKPVF-------AEIADEFLEFIR--GAELVIHNAPFDIGFMDYEFRKLNKG 117

Query: 88  IPIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
           IP  +  CT    LVLAR         L A+ +   + + K      L+      + +  
Sbjct: 118 IPPTQDFCTITDSLVLARKLFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLA 177

Query: 142 LYDRN----KPNHREAWRLFGEYCKG 163
           +             E+     EY   
Sbjct: 178 MTGGQTSLSFSMDSESANNEQEYEIQ 203


>gi|134295347|ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138504|gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 244

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 50/190 (26%), Gaps = 38/190 (20%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-----DVCVILFAFGF 37
           M  + +D ET                       LT   +  Y       D      A   
Sbjct: 1   MRQIILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPG----ALAV 56

Query: 38  DDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI----- 90
                E   D      +   +++ +      ++ HN+ F+   L      L +P      
Sbjct: 57  HGLTTEFLSDKPKFAEVADQIRDFV--KGAELIIHNAPFDLGFLDAEFARLGLPPFIEHC 114

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              I TL  A+        +L A+ +   +S+        L+      E +  +      
Sbjct: 115 DGVIDTLAEAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDS 174

Query: 149 NHREAWRLFG 158
              +     G
Sbjct: 175 LVIDMLDDAG 184


>gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 1441

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 45/139 (32%), Gaps = 22/139 (15%)

Query: 3   TLFIDFETRSP---IDLTKCGICKYAEDVCVI-LF-AFGFDDHP--VELWDCV------- 48
            +  D ET       D           D  +I  F +F    HP      +         
Sbjct: 426 YVVFDVETTGLSAVYDTIIELAAVKIHDGEIIDRFESFANPHHPLSATTINLTGITDDLV 485

Query: 49  -HDPVMPQVLKEALENT-DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
            + P + +VLK+  E   D  +VAHN+ F+   L        +    +  I TL LAR  
Sbjct: 486 ENAPEVEEVLKKFHEWAGDAVLVAHNASFDMGFLNVGYKKMGIGKASNPVIDTLELARFL 545

Query: 104 GL---PSALKAVGEALKLS 119
                   L  + +   + 
Sbjct: 546 YPDMKNHRLNTLAKKFDVE 564


>gi|264678170|ref|YP_003278077.1| DNA polymerase B region [Comamonas testosteroni CNB-2]
 gi|262208683|gb|ACY32781.1| DNA polymerase B region [Comamonas testosteroni CNB-2]
          Length = 672

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 64/218 (29%), Gaps = 63/218 (28%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--------ELWDCVHDPVM 53
             + +D ET    DL    +   AE   V+   F   + P         EL  C     M
Sbjct: 37  KVVSLDIETSQHQDLYSIALDGMAE--RVV---FMLGEAPAKPLRTPGFELIHCSTRKAM 91

Query: 54  PQVLKEALE--NTDVTIVAHN-SYFERTVLKA---------CFNLDIPIHRWICT----- 96
              L +     + DV  +  N   F+  VL+              +     W  T     
Sbjct: 92  IDRLNDWFARNDPDVI-IGWNVIQFDLRVLQKTADECATPLLLGRERKPIAWR-THPGKQ 149

Query: 97  ------L-----------VLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                 +           + A        +L+ V + L      + EGK++   + K   
Sbjct: 150 GYLFAPMPGRVVVDGIEALRAAVWSFPSFSLENVAQEL------LGEGKDIGDEYDKMAE 203

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            E  Y  +KP           Y   D  +   IF++ +
Sbjct: 204 IERRYQLDKP-------ALAAYNIRDCELVLRIFEKAK 234


>gi|170094937|ref|XP_001878689.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645993|gb|EDR10239.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 532

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 13/139 (9%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
             V +         P+ L+  +EN +V  +  N   +   L   + +            L
Sbjct: 267 GMVLIIQIFGMRRFPKNLQSLIENPNVPKMGVNILNDGKKLFRDYGI------------L 314

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           A+S     AL  V +      +KM    +L+ ++C     +    R      +  +   +
Sbjct: 315 AQSLVELGALAMVADPAAKRRRKMVSLAKLVEQYCGKLLEKGSI-RTGNWEAKLDQEQID 373

Query: 160 YCKGDVTVTREIFKRLEPL 178
           Y   D   T +++  L  +
Sbjct: 374 YAANDAHSTIQVYNELVKM 392


>gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13]
          Length = 1437

 Score = 46.6 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 38/144 (26%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDCV---- 48
           ET    D+   G+     D  + L A       +                   +      
Sbjct: 420 ETYVVFDVETTGLSA-MYDTIIELAAVKVKGGEIIDRFESFANPHHPLSATTINLTGITD 478

Query: 49  -------HDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                      + +   E +++    +VAHN+ F+   L        L    +  I TL 
Sbjct: 479 DMVQNAPEVGDVLKQFSEWMQDD--ILVAHNASFDMGFLNIGFQRIGLGKAKNPVIDTLE 536

Query: 99  LARSNGLP---SALKAVGEALKLS 119
           L R          L  + +   + 
Sbjct: 537 LGRLLFPSLKNHRLNTLCKKFDIE 560


>gi|194743424|ref|XP_001954200.1| GF18156 [Drosophila ananassae]
 gi|190627237|gb|EDV42761.1| GF18156 [Drosophila ananassae]
          Length = 586

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 47/188 (25%), Gaps = 35/188 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D E      +T  G  +      V L           L+   H   +P+ L+E L
Sbjct: 78  KVLGFDCE-----WITVGGSRRP-----VALLQLSSHQGLCALFRLCHMKQIPKDLRELL 127

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA--RSNGLPSALKA--VGEALK 117
           E+  V  V                    +      + L+     G+ S L    +     
Sbjct: 128 EDDAVIKVG-------------------VAPQEDAMKLSHDYGVGVASTLDLRFLCVMAG 168

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
              + +  GK                  +    ++       Y   D  V   I+++L  
Sbjct: 169 HKPEGL--GKLSFRHLDYPLDKNWRLACSNWEAKQLEPPQLNYAANDALVAVAIYEKLCR 226

Query: 178 LSSKEQEL 185
                   
Sbjct: 227 DLEPRHFW 234


>gi|156979774|ref|YP_001442033.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|156721909|dbj|BAF78326.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus Mu3]
          Length = 897

 Score = 46.3 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 64/504 (12%), Positives = 134/504 (26%), Gaps = 60/504 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV---LARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     + I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPN---------HREAWRLFGEY 160
           +                K +I  F K E       +             +   + +  +Y
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQY 202

Query: 161 CKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALAHTLNQIVDVERTK 217
               +  + E F           ++     +    +     VD        Q + +  T 
Sbjct: 203 DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVDQLGLTYRPQQLYLAETI 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKLTPQA 273
           LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K  P  
Sbjct: 263 LDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAM 322

Query: 274 IQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQ----FLGASRTGRWSGCVFPP 326
            +  N ++     +S    ++  L+  +  D      +      L    T   SG     
Sbjct: 323 NEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNILKMQLLIWITETPSG-DIQE 381

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
            NL    + + +                + ++  +  +                   I+ 
Sbjct: 382 LNLKGGQKMYFDQKIETYVPARHDVHYYNFIKRNAQNI------------------QIDI 423

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
              A +     +   ++  +D  V    R  + A  QVT +        +L L  +   +
Sbjct: 424 TNHAHLIHSDVENSIYQLFDDCIVDEAHRLPDYALNQVTNELSYADIKYQLGLIGKNENE 483

Query: 447 AF---QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                        +        +          +       +         +        
Sbjct: 484 KLLKAIDQLEKQRILEKLDIAPIDIFGLKASMNEIHELNEQLFSTIFTIINDSDVYDDDI 543

Query: 504 ERVKKAW-RQKHSRVSELWNELHQ 526
            R    +  +    + +L   + +
Sbjct: 544 HRFHNVFTFETKDILKDLHAIIDK 567


>gi|90416118|ref|ZP_01224051.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332492|gb|EAS47689.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 239

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 42/153 (27%), Gaps = 39/153 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-------HPVELWDCV----H 49
           M  + +D ET     L      +  E  CV L              +P    D      H
Sbjct: 1   MRQIVLDTETTG---LETSQDHRIIEIGCVELVGRKLTGRHYHQYVNPQRKVDVGAMEVH 57

Query: 50  D--PVMPQVLKEALE----------NTDVTIVAHNSYFERTVLKACFNLDIPIH------ 91
                  +  K   E          +    ++ HN+ F+   +       +         
Sbjct: 58  GITDQFLED-KPLFETVAREFLEFVDGADLVI-HNAPFDVGFI-NHEIAKLNGAYQAIES 114

Query: 92  --RWICTLVLARSNGLPS--ALKAVGEALKLSS 120
             R I TL LAR         L A+ +   + +
Sbjct: 115 GCRIIDTLALARQKHPGQKNNLDALCKRYGVDN 147


>gi|154247067|ref|YP_001418025.1| ribonuclease D [Xanthobacter autotrophicus Py2]
 gi|154161152|gb|ABS68368.1| ribonuclease D [Xanthobacter autotrophicus Py2]
          Length = 382

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 68/274 (24%), Gaps = 32/274 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + +           L D + D +        + N  V  V H    +  ++       
Sbjct: 37  PKLCVVQVA-SPEEAVLIDALADGLDLAPFYRLMANERVMKVFHAGRQDIEIIWHQA--R 93

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +  H    T V A   G   ++       ++       G  L     K         R  
Sbjct: 94  LIPHPVFDTQVAAMVLGYGDSISYDQLVQRV------TGHAL----DKSSRFTDWSRRPL 143

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
              +        Y   DVT  R+I+ +L           ++     +       A     
Sbjct: 144 SQAQI------VYAVADVTHLRDIYIKLTTDLETRGRAEWV---GEEMHVLTSPATYEQH 194

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
                       ++   L   LV  +   E+      L  G  ++D        V+    
Sbjct: 195 PDSAWERLKSRVRKPREL-AVLVEVAAWREREAQTRDLPRGRVIKD-------EVIGEIA 246

Query: 268 KLTPQAIQVFNNRMRASR--SAVLKLNTLVEAMN 299
              PQ  +         +          ++EA+ 
Sbjct: 247 VQQPQTPEKLAELRSLPKGFERSRYGEAVLEAVR 280


>gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 318

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 69/254 (27%), Gaps = 31/254 (12%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPNHREAWRL 156
                +     L+ +   L +         + I      +       + N+  ++     
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEEGNRKVNKAVLDE 189

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y    V       KR            YLD         V V         +     
Sbjct: 190 TAVYEA--VKEMLVCNKRNVEWLRCMNVGSYLDIKAFYPVMRVKVKGRKKYV--LTEILE 245

Query: 217 KLDQELESLTYGLV 230
              +E+ +      
Sbjct: 246 DDVKEICTSLKCEP 259


>gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
           DSM 40736]
          Length = 330

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 16/95 (16%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---L 86
           D  PV +     +          + +     LE     +VAHN+ F+  ++   +     
Sbjct: 66  DPGPVWIHGLTSEALEGAPLFQDIAEEFTTRLE--GRVLVAHNAVFDWQMIAREYARAQR 123

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           ++P+ + +CT+ L++  GLP     L+++     +
Sbjct: 124 EVPVRQRLCTIALSKELGLPLPNHKLESLAAHYGV 158


>gi|289620328|emb|CBI53186.1| unnamed protein product [Sordaria macrospora]
          Length = 797

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 42/139 (30%), Gaps = 18/139 (12%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           + +L+ +  +++     +    +        + +T  + V   + +  QEL         
Sbjct: 22  YNKLKSILREDKPDDDDEPWTEEDENRFCDEIFNTQLEKVAQFQEEKMQELR-------- 73

Query: 232 SSRCLEKLKTWLFLETGLHLE----DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
                 +     F +          +  + T + +    K L  +   + N      + +
Sbjct: 74  ------QRVDTAFDKLRELPPADAENKDKPTDEALAQRLKDLEAELDGITNEVKELQKYS 127

Query: 288 VLKLNTLVEAMNSDGRLRG 306
            L     ++ +    R RG
Sbjct: 128 NLNYTGFLKIVKKHDRKRG 146


>gi|307184738|gb|EFN71060.1| DNA polymerase subunit gamma-1, mitochondrial [Camponotus floridanus]
          Length = 1254

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 92/320 (28%), Gaps = 43/320 (13%)

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            +P+   S     + +   PT +T+    ++ I   +R  V A  G  +V AD+   E  +
Sbjct: 850  IPQVVVSGTLTRRAVE--PTWMTASNAHIERIGSELRCMVQAPPGYNIVGADVDSQELWI 907

Query: 389  LA-----WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
             +                         +      +V  A+     R   KV+  A  Y  
Sbjct: 908  ASIIGDAHYKSIHGATPFGWMTLIGTKSNGTDMHSV-TAKAIGISRDHAKVINYARIYGA 966

Query: 444  GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF---CRWMQENHPEHAIEDLFIG 500
            G K  +++      ++       K+       +  + F     ++  +  +         
Sbjct: 967  GQKFAERLLKQFNPSMTDAEATSKSRKMFALTKGKKVFRLKAEFINNDLEDKLYTSYQAY 1026

Query: 501  TACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
               +   K  +    + SE  +    A    +E               +   K      L
Sbjct: 1027 QMAKLHGKTLQDMFQK-SEWMDGSESAMFNRLEE--------------IAGSKHPVTPFL 1071

Query: 561  MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA 617
                 R+L   D  ++  +L                    +VQ+ + D   ++   M   
Sbjct: 1072 NARLSRALEITDTDDDDKFL--------------PTKINWVVQSGAVDFLHLMLVCMRWL 1117

Query: 618  TKAGYDIVLTVHDEIVCETP 637
             +      L+ HDE+    P
Sbjct: 1118 MRDNARFCLSFHDEVRYLVP 1137



 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 81/252 (32%), Gaps = 48/252 (19%)

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
             IV HN  ++R+ +K  + ++    R++ T+     +   S L +   +L LS +K + 
Sbjct: 351 KIIVGHNVSYDRSRIKEQYWMNCTGSRFLDTM---SLHICVSGLNSYQRSLLLSKKKPDL 407

Query: 126 GKE----------LI---ARFCKGETHECLYDR----NKPNHREAWRLFGEYCKGDVTVT 168
            K+          LI     +C  E  +   D        + +  + +   YC  D   T
Sbjct: 408 EKDNWQSNTSLNSLIEVHKLYCGSEISKESRDIFVEGTIEDVKNNFNMLMTYCASDAVAT 467

Query: 169 REIFKRLEPLSSKEQELWYLDQ------------------TINDRGYCVDVALAHTLNQI 210
             + + L PL  +                            + +     D  L +     
Sbjct: 468 HNVLRNLFPLFQERFPHPVTLAGMLELGSAYLPVNSNWQRYLEESESTFD-DLNYEAKFT 526

Query: 211 VDVE------RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL---HLEDLTETTCQR 261
           +             ++  + L       S    K+K  +  +  L     +D+ + + ++
Sbjct: 527 LAKRADTVCHLMHDEKYKQDLWMWDQDWSTQEIKMKAKMPKKVKLDNIETKDMEKLSDKK 586

Query: 262 VLSSNKKLTPQA 273
            LS +++     
Sbjct: 587 YLSDDEEEEQDP 598


>gi|300087681|ref|YP_003758203.1| hypothetical protein Dehly_0570 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527414|gb|ADJ25882.1| conserved hypothetical protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 192

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 50/176 (28%), Gaps = 22/176 (12%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
           ++D ET         G+     D+ VI           E    V D + P+ L  A+E  
Sbjct: 25  YLDIETT--------GLSPQCCDITVIGIHLFKPPDREEFVQLVGDDITPKNLLAAMEGI 76

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRW--ICTLVLARSNGLP--SALKAVGEALKLSS 120
                 + + F+   ++    LD+           ++   +       LK +   L +  
Sbjct: 77  GRLFTFNGARFDLPWIRHHLGLDLSAGGIEHYD--LMYYCHRRHLFGGLKKIEPLLGIP- 133

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                  E+            +         +A      Y K D     ++ + + 
Sbjct: 134 ---RSLPEMNGYQAVKLWWRYIN----DFDHQALATLLAYNKEDTRNLVQLRRLVM 182


>gi|291616243|ref|YP_003518985.1| PolB [Pantoea ananatis LMG 20103]
 gi|291151273|gb|ADD75857.1| PolB [Pantoea ananatis LMG 20103]
          Length = 803

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 63/218 (28%), Gaps = 56/218 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-----ELWDCVHDPVMPQV 56
             + +D ET    +L   G+        V +      +        EL      P + + 
Sbjct: 170 KWVSLDIETTQHGELYCIGLEG-CGQRQVFMLGP--PNGDASELDFELIYLESRPQLLEA 226

Query: 57  LKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------------ 92
           L       + DV  +  N   F+  VL+     + + + + R                  
Sbjct: 227 LNRWFADNDPDVI-IGWNVVQFDLRVLQKHADRYGIPLRLGRQQAALEWREHGFKPGVFF 285

Query: 93  -------WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                   I     + +        +L++V + L      + EGK +   + + E     
Sbjct: 286 AQATGRLIIDGIDALKSAFWDFPSFSLESVSQQL------LGEGKAIDNPWQRMEEINWR 339

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           +  +KP           Y   D  +   IF + E +  
Sbjct: 340 FANDKP-------ALARYNLKDCELVTRIFHKTEIMPF 370


>gi|254786149|ref|YP_003073578.1| DNA polymerase III subunit epsilon [Teredinibacter turnerae T7901]
 gi|237685417|gb|ACR12681.1| DNA polymerase III, epsilon subunit [Teredinibacter turnerae T7901]
          Length = 239

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 41/154 (26%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-DVCVILFAFGFDDHP 41
           M  + +D ET                       LT     +Y   D  +       D+  
Sbjct: 1   MRQIVLDTETTGLEPEQGHRIIEIGCVELFNRKLTGKHFHQYIRPDREI-------DEGA 53

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVA------HNSYFERTVL---KACFNLDIPIHR 92
           +E+    ++ +  + +   + +  +T +       HN+ F+   L       N  +   R
Sbjct: 54  IEVHGITNEFLADKPVFAQIADDFLTFIGDAELVIHNAPFDVGFLDHELRLLNRGLAPIR 113

Query: 93  ----WICTLVLARSNGLPS--ALKAVGEALKLSS 120
                + TLV AR         L A+ +   + +
Sbjct: 114 ERCGVLDTLVYARRKHPGQKNNLDALCKRYMVDN 147


>gi|241663345|ref|YP_002981705.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D]
 gi|240865372|gb|ACS63033.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12D]
          Length = 242

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 30/183 (16%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y   +  +   A       
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPEREIDAGAMAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIHRWI----- 94
            E   D      +   +++ ++  +  I  HN+ F+   L      L +P  R       
Sbjct: 61  NEFVADKPKFAEIVNEIRDYVQGAEAII--HNAAFDLGFLDMEFQRLGLPPFREHLSGHI 118

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL  AR        +L A+ + L +S+        L+      E +  +         +
Sbjct: 119 DTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQNTLVID 178

Query: 153 AWR 155
              
Sbjct: 179 MLE 181


>gi|288799990|ref|ZP_06405449.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333238|gb|EFC71717.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 163

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 47/142 (33%), Gaps = 26/142 (18%)

Query: 1   MA-TLFIDFETRSPIDLTKCGICKYAEDVCVILFAF--GFDDHPVEL--W---------- 45
           M   + IDFET +    + C I        VI  +F       P     W          
Sbjct: 1   MKDFVAIDFETANSERSSVCSIGIVIVRNGVITDSFYSTIQPEPNYYSYWCTKVHGLTKS 60

Query: 46  DCVHDPVMPQVLKEALENTDV---TIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
           D    P   ++ K+      +     VAHNS F+ + LK     + +D P + +  TL  
Sbjct: 61  DTEESPCFHEIWKQI--EPKIGNLPFVAHNSRFDESCLKAVFRVYQMDYPDYIFFDTLAA 118

Query: 100 ARSNGLP---SALKAVGEALKL 118
           AR          L  V +    
Sbjct: 119 ARRVLPHLPNHQLHTVAQECGY 140


>gi|229472183|gb|ACQ72606.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472275|gb|ACQ72652.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472399|gb|ACQ72714.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 181

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S G+ +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPGQIMVGADLAGIELRMLSHFL-------AKYDQGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +    L++ A   K       + DA + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKQLSSSAAKKKGKEIRTAYVDAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + +   + +           ++ 
Sbjct: 120 LDKLLDAIKKASERGFIKALDGRKII 145


>gi|153008625|ref|YP_001369840.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
           49188]
 gi|151560513|gb|ABS14011.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
           ATCC 49188]
          Length = 332

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELW---------- 45
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPADITRITGI 133

Query: 46  --DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
             D V    +P+   +AL      I+AHN+ F+R  L+  F++      W C
Sbjct: 134 TDDMVKGQTIPREKLDALIAEADIIIAHNAGFDRPFLER-FSIAFANKPWAC 184


>gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
 gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
          Length = 1513

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 73/306 (23%), Gaps = 51/306 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCV-------------ILFAF----GFDDHPV 42
            +  D ET     +    I   A   E   +             I F         D   
Sbjct: 470 YVVFDLETTGFSPIKDKIIEIGAVKVEHGEITDKFSTFVNPKVPIPFQITQLTSITDQ-- 527

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            +        +     E + +  +  VAHN+ F+ + ++      ++         T+ +
Sbjct: 528 MVIGAPDIETVLPQFLEFIGDAAL--VAHNASFDVSFIEQNCRYQDIQPDFTSV-DTVAM 584

Query: 100 ARSNGLPSA---LKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           AR      +   L  V  AL +S         +  A          +             
Sbjct: 585 ARILLPTLSKYKLNVVANALHISLENHHRAVDDAGATAEIFVKFVEMLKDRGIYDLAKLN 644

Query: 156 LFGEYCKGDV--------TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
            FGE    D          +   + +           + +L          +  +     
Sbjct: 645 QFGE-NNADAVRKLPSYHVIILALNEVGRVNLYTLISMSHLKYYARRP--RIPKSELSKY 701

Query: 208 NQIVDVERTKLDQELES--LTYGLVSSSRCLEKLKTWL------FLETGLHLEDLTETTC 259
            + + V       EL    L          +     +L        +  +    +T+   
Sbjct: 702 REGLLVGSACEAGELYQAILNDKSEERIAKIANFYDYLEIQPLGNNQFMIESPKITKVQN 761

Query: 260 QRVLSS 265
           +  L  
Sbjct: 762 EEDLKE 767


>gi|306825581|ref|ZP_07458920.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431942|gb|EFM34919.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 830

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 88/295 (29%), Gaps = 40/295 (13%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51
             + +D E   T S   + + GI    E+  +I   +  D +P E  D            
Sbjct: 8   RYVVVDLEATSTGSKAKIIQVGI-VVIENGEIIN-QYATDVNPHEPLDSHIKELTGLTDR 65

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                     +   + E +++     VAHN  F+  +L         ++   R   T+ L
Sbjct: 66  RLAAAPEFSQVAGKIFELVKDG--IFVAHNVQFDANLLAEFLFFEGYELRTPRV-DTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQKMEE-------GKELIARFCKGETHECLYDRNKPN 149
           A+          L  + + L +  +             EL+    +              
Sbjct: 123 AQVLYPQFEKYNLGILCQELGIELEHAHTALSDAQATAELLLYMRQKLFELPKGLLESLL 182

Query: 150 HREAWRLFGEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
           +     L+  Y    +V   + +     P   +   L+   ++       +    A  ++
Sbjct: 183 NLADNLLYESYLVIEEVYQQQSL--LSSPDLMELHGLFLRKESKALVPRKLSKDFAKNIS 240

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
            +   ER +  +  E +   L        + +T L    G  L  L   +   +L
Sbjct: 241 LLGLEERPQQLEFAEKVEQLLEEHQTSFIQAQTGLGKTYGYILPALNSESQAGIL 295


>gi|229472409|gb|ACQ72719.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRK 143


>gi|159046195|ref|YP_001541867.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12]
 gi|157913954|gb|ABV95386.1| DNA-directed DNA polymerase [Dinoroseobacter shibae DFL 12]
          Length = 516

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 51/391 (13%), Positives = 102/391 (26%), Gaps = 67/391 (17%)

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           AV E      +     K +  +    E              EA             +T E
Sbjct: 96  AVLEQYGAEQEVCSAYKRMFNKGLPFEPGVA------SKAAEALAKMYLALLERAKLTGE 149

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
                E   + E  ++ L Q+    G  VD      +    + +     +   +     +
Sbjct: 150 ----AERFLTVEVPVYRLLQSAMAVGIMVDRQRLSEMRAEAEHDYFTCLKNYSAKHDMPL 205

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            +                             +    +    +   V          ++  
Sbjct: 206 ETPNRSA------------------------LEEKLRADGFELDDV----------SIEY 231

Query: 291 LNTLVEAM-NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTS 349
              L+E + +       T+    A    R  G +     + RP            HL + 
Sbjct: 232 ---LLEYVPHQRDFGSDTIALQAADTARRVLGSLALSTTIMRPVLDVFGSRTSRIHLRSP 288

Query: 350 ITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLY 409
                  LQ +S   R  +   EG +L   D    E  ++A ++ +   +K +  G+   
Sbjct: 289 S------LQNMSKKYRGIIAGREGAELSYVDFDQYEVGIMAALSKDCELMKLYAAGDMYD 342

Query: 410 VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTN 469
           +                  R   K + L+  Y    KA    A + G++           
Sbjct: 343 LFATTHLGL-------SGNRKAAKQLFLSYAYGMSKKALIDAAVSLGVDRTRAK------ 389

Query: 470 SAPEEWEDAENFCRWMQENHPEHAIEDLFIG 500
           +A   +   E + R +  +   +      +G
Sbjct: 390 NAFGLFAQYETWKRSVWADFQANGRVATLLG 420



 Score = 44.0 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 601 IVQAVSRDILAEGMMNATKA-GYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWAK 659
           +VQ  +  I    +++  K     IVL +HD ++ E   T     + +     +  +   
Sbjct: 443 VVQGTASLIFKRALLDVGKLDDVTIVLPMHDALLFE--HTSADTPNKVVTAFENAMTNTL 500

Query: 660 G 660
           G
Sbjct: 501 G 501


>gi|229472191|gb|ACQ72610.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472285|gb|ACQ72657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472519|gb|ACQ72774.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472529|gb|ACQ72779.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472531|gb|ACQ72780.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472549|gb|ACQ72789.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472609|gb|ACQ72819.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRK 143


>gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
 gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           G9842]
          Length = 315

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 69/254 (27%), Gaps = 31/254 (12%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPNHREAWRL 156
                +     L+ +   L +         + I      +       + N+  ++     
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEEGNRKVNKAVLDE 186

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y    V       KR            YLD         V V         +     
Sbjct: 187 TAVYEA--VKEMLVCNKRNVEWLRCMNVGSYLDIKAFYPVMRVKVKGRKKYV--LTEILE 242

Query: 217 KLDQELESLTYGLV 230
              +E+ +      
Sbjct: 243 DDVKEICTSLKCEP 256


>gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales
           bacterium]
          Length = 1428

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 25/140 (17%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVIL-FAFGFDDHP---VELWDCVH-DPVMP 54
           L  D ET         + + G  K  +   V+  ++            +         M 
Sbjct: 419 LVFDLETTGLNPKEDEIIEIGAIK-MKGSEVLGTYSTFVKPEKELSAMITSLTGITEDML 477

Query: 55  QVLKEALE--------NTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLARS 102
              +   E             +VAHN+ F+       +K  F  D  +   I TL LA+S
Sbjct: 478 SEARPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKHFGGDWEM-PCIDTLALAKS 536

Query: 103 N--GLPSALKAVGEALKLSS 120
                  +L  V + LKL  
Sbjct: 537 LFRSKSYSLDNVVKRLKLGH 556


>gi|262212089|gb|ACY35661.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212167|gb|ACY35700.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRK 143


>gi|170750672|ref|YP_001756932.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657194|gb|ACB26249.1| DNA polymerase III, epsilon subunit [Methylobacterium radiotolerans
           JCM 2831]
          Length = 240

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 45/162 (27%), Gaps = 37/162 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFDD 39
             + +D ET         G  +  E   V L                       AF    
Sbjct: 3   REIVLDTETTGT---EAKGGDRLIEIGAVELLNHIPTGRTFHRYCNPQRPVSEGAFNVHG 59

Query: 40  -HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-------DIPIH 91
                L D      +   L   L +  +  V HN+ F+   L   +          I + 
Sbjct: 60  LSDAFLADKPVFAEIVGELLAFLADGRL--VIHNAPFDVGFLNMEYARLGANAPPPIQLE 117

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             + TL +AR     +   L A+     + + +  +   L+ 
Sbjct: 118 DVVDTLPMARRKHPGAANNLDALCARYGIDNTRRTKHGALLD 159


>gi|309782421|ref|ZP_07677145.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
 gi|308918758|gb|EFP64431.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 30/183 (16%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y   +  +   A       
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPEREIDAGAMAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIHRWI----- 94
            E   D      +   +++ ++  +  I  HN+ F+   L      L +P  R       
Sbjct: 61  NEFVADKPKFAEIVNEIRDYVQGAEAII--HNAAFDLGFLDMEFQRLGLPPFREHLSGHI 118

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL  AR        +L A+ + L +S+        L+      E +  +         +
Sbjct: 119 DTLREARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQNTLVID 178

Query: 153 AWR 155
              
Sbjct: 179 MLE 181


>gi|213691637|ref|YP_002322223.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523098|gb|ACJ51845.1| DNA polymerase III, epsilon subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 211

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 34/139 (24%), Gaps = 28/139 (20%)

Query: 2   ATLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDD--------------HPVE 43
             + +D ET         +T+ G  +  +   V  F    +                   
Sbjct: 9   DYVALDLETTGFYPNSCAITEIGAVRVRKGHIVDQFQQLVNPLRPIPRQITTLTGITDAM 68

Query: 44  LWDCVHDPVMPQVLKEALENTDV-----TIVAHNSYFERTVLKACFNLDIPIHRW----I 94
           + D      +       L           IV HN  F+   L       I    +     
Sbjct: 69  VADLDPIDKVLPRFIAWLATPAASPAVEPIVGHNVSFDLRFLD-YNTRHIAGCGFACADY 127

Query: 95  CTLVLARSNGLPSALKAVG 113
            T+ ++R+         + 
Sbjct: 128 DTMQISRALFPAQRHHRLA 146


>gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 695

 Score = 46.3 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 45/150 (30%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDH---PVELWD------------ 46
            +  D ET   +               ++  A     +      E++D            
Sbjct: 496 YVVFDTETTGLMP----------SQDEIVQIAAVRIVNGRRVEAEVFDTLVNPRRPIPPS 545

Query: 47  -----------CVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKAC-FNLDIPI-H 91
                          P M +V ++        V  VAHN+ F+   L+     +D    +
Sbjct: 546 STEVHGITDAMVADAPDMTEVGRQFHKFAEGAVL-VAHNAPFDMEFLRRAELLIDRRFDN 604

Query: 92  RWICTLVLARSNG---LPSALKAVGEALKL 118
             + T++L+          +L A+   L +
Sbjct: 605 PILDTVLLSAVLFGQTEVHSLDALAHRLGI 634


>gi|296133462|ref|YP_003640709.1| DnaQ family exonuclease/DinG family helicase [Thermincola sp. JR]
 gi|296032040|gb|ADG82808.1| DnaQ family exonuclease/DinG family helicase [Thermincola potens
           JR]
          Length = 994

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 24/136 (17%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVE--------------LW 45
           + +D ET         + +    ++AE   +  F                        + 
Sbjct: 7   VAVDIETTGLNPADSEIIEVAAVRFAEGRVLETFQSLVKPEKKIPLKIQQLTGINESMVA 66

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           D      +  +L E + ++   I+ HN  F+   L+    + I   R+  TL LAR    
Sbjct: 67  DAPACAEVTGMLAEFVHDS--IIIGHNIGFDLNFLQHYHPVFIR-ARYYDTLPLARLVWP 123

Query: 106 ---PSALKAVGEALKL 118
                 L  + EALK+
Sbjct: 124 KAHGYRLANLVEALKI 139


>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
 gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
          Length = 1433

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 44/142 (30%), Gaps = 32/142 (22%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LW------- 45
           ET    D+   G+     D  + L A       +                 +        
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITD 474

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           D + D      + +  E    D T+VAHN+ F+   L        LD P +  I TL LA
Sbjct: 475 DMLTDAPEVGEVFKKFEAWMGDHTLVAHNASFDMGFLNVGFKKCGLDKPKNPVIDTLELA 534

Query: 101 RSNGL---PSALKAVGEALKLS 119
           R          L  + + L + 
Sbjct: 535 RFLFPEMKNHRLNTMCKKLDIE 556


>gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1]
 gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1]
          Length = 1375

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 22/139 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCVI-----------LFAFGFDDHPVELWDCV 48
            +  D ET     +    I   A    D  +I             +    +      D V
Sbjct: 425 YVVFDVETTGLSAMYNTIIELAAVKIRDGEIIDRFESFANPHHPLSATTINLTGITDDMV 484

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
                     +A ++   D  +VAHN+ F+   L   +    LD   +  I TL LAR  
Sbjct: 485 EGAPEVAEALKAFKDWAGDAVLVAHNASFDMGFLNVGYGKAGLDKAENPVIDTLELARLL 544

Query: 104 GL---PSALKAVGEALKLS 119
                   L  + +   + 
Sbjct: 545 YPEMKNHRLNTLAKKFDVE 563


>gi|328851794|gb|EGG00945.1| hypothetical protein MELLADRAFT_39474 [Melampsora larici-populina
           98AG31]
          Length = 1150

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 78/314 (24%), Gaps = 63/314 (20%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           LP+ +       +      T + +       I   ++S V A  G  +V AD+   E   
Sbjct: 643 LPQVTVMGTVTRRATE--KTWLAAANAKKNKIGTELKSMVRAPPGYAIVGADVDSEEL-W 699

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGG 444
           ++ + G+        T          +S        T       R   KV   +  Y  G
Sbjct: 700 ISSVMGDAQFGMHGATAIGWMTLEGTKSAGTDLHSKTATILGISRNEAKVFNYSRIYGAG 759

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
                ++        +               +  +N+   + E    +   + F+    E
Sbjct: 760 VTHAIQLLMKADPKTSKEEANQLAKKLYRSTKGLKNYRSEIFERRFWYGGTESFLFNKLE 819

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
            +                 L    +          A ++  +P   +  D     +    
Sbjct: 820 EI----------------ALDDEPKTPALGCGITRALRKAHLPTKSVGIDGGPDFMT--- 860

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNAT 618
                                                VQ+   D   +L   M   ++  
Sbjct: 861 -------------------------------SRVNWAVQSSGVDYLHLLIVAMDYLIDRY 889

Query: 619 KAGYDIVLTVHDEI 632
                 +++VHDEI
Sbjct: 890 GIQARYMISVHDEI 903


>gi|290982318|ref|XP_002673877.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
           gruberi]
 gi|284087464|gb|EFC41133.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
           gruberi]
          Length = 956

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 62/234 (26%), Gaps = 42/234 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            ID E  S          +  +   V L           L D +       +L  +  + 
Sbjct: 365 AIDLEQHS---------YRSFQGF-VCLMQISTRSED-FLIDTLELRQHMHILNSSFTHP 413

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLSSQK 122
            +  V H S  +   L+   +  I       T    R+  LP  +L  + +    + + K
Sbjct: 414 KIVKVMHGSDCDILWLQR--DFAIYCVNLFDTGQACRTLALPGCSLAYLLKHYCGIDADK 471

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
             +  +                R  P          +Y + D      I+ RL       
Sbjct: 472 KYQLADW-------------RVRPLP------SEMVKYAREDTHYLLYIYDRLRQDIFNT 512

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           +                   +   L +  ++   + ++EL S T  L       
Sbjct: 513 KPNTSTVSGFER--------MEEVLVRSKELCMRRYEKELFSETSYLSLIKFSR 558


>gi|324993194|gb|EGC25114.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK405]
 gi|327461463|gb|EGF07794.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1]
 gi|327489318|gb|EGF21111.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK1058]
          Length = 814

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 73/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G      +  +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---NAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCHGIFLRLPQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER +  +    +   L        + +T L    G  L 
Sbjct: 242 GLEERPEQLKFARFMEEALDQQEPSFLEAQTGLGKTFGYLLP 283


>gi|317490808|ref|ZP_07949244.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920355|gb|EFV41678.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 244

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVINRRLTGRNFHVYIKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDI 88
                  + D  +    K    +             +V HN+ F+   +       N DI
Sbjct: 61  EAYGVHGISDDFLLD--KPTFADIADEFLEFIRGAELVIHNAPFDIGFMDYEFRKLNRDI 118

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +LV+AR        +L A+    ++ + K      L+ 
Sbjct: 119 PKTETFCKITDSLVMARRLFPGKRNSLDALCNRYEIDNTKRTLHGALLD 167


>gi|299533612|ref|ZP_07046986.1| DNA polymerase II [Comamonas testosteroni S44]
 gi|298718334|gb|EFI59317.1| DNA polymerase II [Comamonas testosteroni S44]
          Length = 672

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 63/219 (28%), Gaps = 65/219 (29%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---------ELWDCVHDPV 52
             + +D ET    DL    +   AE V  +L        P          EL  C     
Sbjct: 37  KVVSLDIETSQHQDLYSIALDGMAERVVFML------GEPTAKPVRTPGFELIHCTTRKA 90

Query: 53  MPQVLKEALE--NTDVTIVAHN-SYFERTVLKA---------CFNLDIPIHRWICT---- 96
           M   L +     + DV  +  N   F+  VL+              +     W  T    
Sbjct: 91  MIDRLNDWFARNDPDVI-IGWNVIQFDLRVLQKTADECATPLLLGRERKPIAWR-THPGK 148

Query: 97  -------L-----------VLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
                  +           + A        +L+ V + L      + EGK++   + K  
Sbjct: 149 QGYLFAPMPGRVVVDGIEALRAAVWSFPSFSLENVAQEL------LGEGKDIGDEYDKMA 202

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
             E  Y  +KP           Y   D  +   IF++ +
Sbjct: 203 EIERRYQLDKP-------ALAAYNIRDCELVLRIFEKAK 234


>gi|311742288|ref|ZP_07716097.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
 gi|311313916|gb|EFQ83824.1| ribonuclease D [Aeromicrobium marinum DSM 15272]
          Length = 411

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 50/181 (27%), Gaps = 29/181 (16%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNS 73
           D  +    +Y++   ++      +     L D         + L +A+ + +   + H +
Sbjct: 55  DAERASGYRYSQRAYLV--QLRREGSGTHLVDPIGFGG--LEDLDDAIGDAE--WILHAA 108

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIAR 132
             +   L     + +       T    R   LP   L  + E              L   
Sbjct: 109 TQDLPCLAE---IGLRPRALFDTEHAGRLLNLPRVGLATLVE------------HFLGRS 153

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
             K  +      R  P        +  Y   DV V  E+   L+    +  +  +  Q  
Sbjct: 154 LAKEHSAADWSTRPLP------EPWLVYAALDVEVLVELRDLLDAELREAGKREWAAQDF 207

Query: 193 N 193
            
Sbjct: 208 E 208


>gi|229472525|gb|ACQ72777.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRK 143


>gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
 gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
          Length = 318

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 69/254 (27%), Gaps = 31/254 (12%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPNHREAWRL 156
                +     L+ +   L +         + I      +       +  +  ++     
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEEGKRKVNKVMLDE 189

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y    V       KR            YLD         + V         +     
Sbjct: 190 TAVYEA--VKEILACNKRNVEWLRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTEILE 245

Query: 217 KLDQELESLTYGLV 230
           +  +E+ +      
Sbjct: 246 EDVKEICTSLKCEP 259


>gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1412

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 23/139 (16%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHP----------VELWDCVH 49
           +  D ET         + + G  K   +  +  F+                     D + 
Sbjct: 403 IVFDLETTGLNPKEDEIIEIGAIKMKGNEILETFSSFVKPQKELSSLITSLTGITEDMLS 462

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSN 103
                + +            +VAHN+ F+   +    K  F  D  +   I TL LA+S 
Sbjct: 463 GAGTIKQVLPEFTKFAEGGILVAHNASFDYGFIRNSVKKYFGGDWEM-PCIDTLALAKSL 521

Query: 104 --GLPSALKAVGEALKLSS 120
                 +L  V + LKL  
Sbjct: 522 YRAKSYSLDNVVKRLKLGH 540


>gi|258511618|ref|YP_003185052.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478344|gb|ACV58663.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 952

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 46/152 (30%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVH-----DPVMP 54
           M  + +D ET               E   ++   A         + D  H     +  +P
Sbjct: 1   MEWIIVDLETTGLDP----------ERAEILEIGALRVRGGE--IVDTFHTLVRPERPIP 48

Query: 55  QVLKEA--LENTDV--------------------TIVAHNSYFERTVLKA---CFNLDIP 89
             +     L + DV                     +  H+  FER+ L      + L + 
Sbjct: 49  DEITRLTGLSDADVAGAPSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQ 108

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKL 118
               +CTL LAR          L+ +   L+L
Sbjct: 109 PGDGLCTLSLARILAPRLMSHRLEYLARRLRL 140


>gi|303286107|ref|XP_003062343.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455860|gb|EEH53162.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 149

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 18/129 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
              +D E             +       +       +    +        M   L    E
Sbjct: 20  EFAVDLE---------HHSYRSFRGFTCV-IQVSTRERDFVVDALALRSKMRAHLARHFE 69

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA------LKAVGEAL 116
           +     V H +  +   L+  F + +       T   AR   LPS       L     AL
Sbjct: 70  DATKQKVMHGADMDVQWLQRDFGIYV--VNMFDTGQAARVLELPSKGLGAFYLTDAAYAL 127

Query: 117 KLSSQKMEE 125
           K       +
Sbjct: 128 KHFCDVDAD 136


>gi|88703294|ref|ZP_01101010.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71]
 gi|88702008|gb|EAQ99111.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71]
          Length = 240

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 29/159 (18%)

Query: 1   MATLFIDFETRSPI-----DLTKCGICKYAEDVCVILFAF--------GFDDHPVELWDC 47
           M  + +D ET          + + G C   E+  +    F          D   +E+   
Sbjct: 1   MRQIVLDTETTGLEVSQGHRIIEIG-CVEMENRQLTGRHFHRYINPERDIDAGAIEVHGI 59

Query: 48  VH----DPVMPQVLKEALEN--TDVTIVAHNSYFERTV----LKACFNLDIPIHR---WI 94
                 D  +   + +   +      ++ HN+ F+       L       +P+ +     
Sbjct: 60  TATFLADKPVFSAVAKDFIDFVDGAELIIHNAPFDIGFLDSELSRWDASALPLAQRCDIT 119

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL++ARS       +L A+     + +   E    L+ 
Sbjct: 120 DTLIMARSRHPGQRNSLDALCGRYGVDNSSRELHGALLD 158


>gi|299142830|ref|ZP_07035958.1| exonuclease [Prevotella oris C735]
 gi|298575698|gb|EFI47576.1| exonuclease [Prevotella oris C735]
          Length = 284

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 23/135 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVIL---FAF--------GFDDHPVELWDCVHDPVMP 54
           ID ET +P   + C +     +  VI+   ++            +  V           P
Sbjct: 9   IDIETMTPERTSACALGLVRVENDVIVQKFYSLIKPIPDDRTVTNTHVHGITPEMVENAP 68

Query: 55  --QVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNGLPS 107
             Q L   +E+  +   + AHN+ F+  VLK     + + IPI   + T  L        
Sbjct: 69  TFQELWPTIEHYISGQVLAAHNTSFDLDVLKKVSAHYGITIPITGVVDTFSLTHL----- 123

Query: 108 ALKAVGEALKLSSQK 122
           +L    + L +   K
Sbjct: 124 SLDETCKVLHVDLGK 138


>gi|262212365|gb|ACY35799.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTNAFLYGAGDEKI---GHSYDKPLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEVIRKASERGFIKALDGRKII 145


>gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU
           1054]
 gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia
           HI2424]
 gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
          Length = 244

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 49/162 (30%), Gaps = 36/162 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTG---LNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E   D      +   + + +++ ++ I  HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLSDKPKFAEVAHQILDFVKDAELII--HNAPFDLGFLDAEFARLGLPPFTEHCG 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             I TLV A+        +L A+ +   +S+        L+ 
Sbjct: 116 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLD 157


>gi|262212053|gb|ACY35643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGGKII 145


>gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1510

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 25/143 (17%)

Query: 2   ATLFIDFETRS----PIDLTKCGICKYAEDVCVI-----------LFAFGFDDHPVELWD 46
             +  D ET         + + G  K      ++              F  ++      D
Sbjct: 479 KYVVFDIETTGFSPEKNKIIEIGAVKVIG-GEIVDRYSTFINPEVPIPFRIEELTSIRDD 537

Query: 47  CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLAR 101
            V       V+         D  +VAHN+ F+ + +K       ++      + T+ LAR
Sbjct: 538 MVITSPTVDVILPQFMEFCKDCIMVAHNADFDMSFIKRNCALLGMECNPT-IVDTVALAR 596

Query: 102 SNGLPSA---LKAVGEALKLSSQ 121
                     L  V +AL +S  
Sbjct: 597 VLLPQLNRFKLDTVAKALNISLD 619


>gi|154508933|ref|ZP_02044575.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798567|gb|EDN80987.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
           17982]
          Length = 414

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 38/191 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E        +    +Y  D  ++      +D    L D  H      VL+  +E+
Sbjct: 51  IALDVE--------RAQGFRYGSDPYLV--QIRREDVGTFLID-THALPDLSVLQPGVED 99

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLSSQ 121
                + H+   +   L+    + +       T + AR  GL    L AV E  L L   
Sbjct: 100 ---VWLLHDCLQDLPNLRQ---VGLRPSTLFDTEIAARLIGLERFGLAAVVEQVLGLGLV 153

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K  +  +                R  P      + +  Y   DV +  E++ RL     +
Sbjct: 154 KDHQASDW-------------SVRPLP------KEWLRYAALDVELLTELYYRLSKRLDE 194

Query: 182 EQELWYLDQTI 192
                +  Q  
Sbjct: 195 MGRWEWAQQEF 205


>gi|121609336|ref|YP_997143.1| DNA polymerase III subunit epsilon [Verminephrobacter eiseniae
           EF01-2]
 gi|121553976|gb|ABM58125.1| DNA polymerase III, epsilon subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 237

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 42/164 (25%)

Query: 2   ATLFIDFETR-----SPIDLTKCG-------------ICKYA-------EDV-CVILFAF 35
             + +D ET      S   + + G             +  Y        ED   V   + 
Sbjct: 3   RQIVLDTETTGLSADSGDRIIELGCVELLNRKLTGNNLHLYFNPGRDSHEDALKVHGIS- 61

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA------CFNLDIP 89
              +    L D      +   + + L+     ++ HN+ F+   L           L   
Sbjct: 62  ---NE--FLKDKPRFAELVDDILQYLQ--GAELIIHNAAFDVGFLNKELELAGHPALAHC 114

Query: 90  IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           + R   TL +A+        +L A+ + L + +        L+ 
Sbjct: 115 VERVTDTLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLD 158


>gi|68067898|ref|XP_675876.1| DNA binding protein [Plasmodium berghei strain ANKA]
 gi|56495304|emb|CAH94067.1| DNA binding protein, putative [Plasmodium berghei]
          Length = 392

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 74/225 (32%), Gaps = 33/225 (14%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            +++       P  +K  LEN  +  V H+   ++ +L    + +I I+      +   S
Sbjct: 104 FVFNINDLNGYPLSVKTILENNKIIKVCHDIKNDQDML---LSKNIEINNVFD--LYNYS 158

Query: 103 NG---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 P +L+ + +      + +++   L    CK                        
Sbjct: 159 IDNYIYPPSLQNLVKTY--LKKHLDKEYRLSNWLCKNLN----------------EKQII 200

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC--VDVALA--HTLNQIVDVER 215
           Y   D   +RE++  LE  +  +Q  +      ND      V+      +   + +  + 
Sbjct: 201 YAANDSYASREVYIALEKKNKNDQTFFINLNNENDYVKHSEVNKKCLGGNREYEKLPSKN 260

Query: 216 TKLDQELESLTYGLVSSS---RCLEKLKTWLFLETGLHLEDLTET 257
             +  ++        +++   +  +  K   FL+     +D T+ 
Sbjct: 261 RIVQNDINHEMLNDKNNAIFNKSSQNEKASQFLQLEKTFDDKTKK 305


>gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SS3/4]
          Length = 1376

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 57/217 (26%), Gaps = 62/217 (28%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYA---EDVCV-----------ILFAFGFDD----HPVE 43
             +  D ET     +    I   A    +  +           +   F  +     +   
Sbjct: 414 DYVVFDIETTGFSPIKNKIIEIGAVKVRNGEIIDRMDEFVNPEVPIPFDIERLTGINDAM 473

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA 100
           +        +     E + +  +  VAHN+ F+ + +        L       + T+ LA
Sbjct: 474 VMGADTVDKVLPRFLEFVGDAAL--VAHNASFDVSFISHNAGLLGLSFDPT-VLDTVTLA 530

Query: 101 RSNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           R+         L  V +AL +S +                                    
Sbjct: 531 RALLPNLNRFKLDTVAKALGVSLENHHR-------------------------------- 558

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                 D   T  IF +   +  K+ ++  LDQ    
Sbjct: 559 ---AVDDAEATAGIFLKFVEMLKKQHDMTNLDQLEEF 592


>gi|15612503|ref|NP_224156.1| DNA polymerase III subunit epsilon [Helicobacter pylori J99]
 gi|4156060|gb|AAD07016.1| DNA POLYMERASE III [Helicobacter pylori J99]
          Length = 323

 Score = 46.3 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYA---EDVCVI-----LFAF-GFDDHPVELWDCVHDPVM-- 53
           F+D ET     L    +   A   +   +I     L       D+  EL    ++  +  
Sbjct: 111 FVDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGITYEDTLNA 170

Query: 54  ------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRW---ICTLVLA--RS 102
                  Q L+  L N+    VAHN+ F+   L   F   +        +CTL L+    
Sbjct: 171 PSAHEALQELRIFLGNS--VFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAI 228

Query: 103 NGLPSALKAVGEALKLS 119
             +  +L  + E L   
Sbjct: 229 LSMRYSLSFLKELLGFG 245


>gi|147904034|ref|NP_001081464.1| DNA polymerase subunit gamma-1 [Xenopus laevis]
 gi|2494179|sp|Q91684|DPOG1_XENLA RecName: Full=DNA polymerase subunit gamma-1; AltName:
            Full=Mitochondrial DNA polymerase catalytic subunit
 gi|1229142|gb|AAB17117.1| DNA polymerase gamma [Xenopus laevis]
          Length = 1200

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 79/312 (25%), Gaps = 35/312 (11%)

Query: 358  QIISDCVRSCVIASEGKKLVVADLAGIEARVLA-----WMAGEQWKLKAFETGEDLYVTT 412
              +   +++ V    G  L+ AD+   E  + A       AG      AF         +
Sbjct: 838  DRVGSELKAMVQVPPGYHLIGADVDSQELWIAAILGEAHFAGIHG-CTAFGWMTLQGKKS 896

Query: 413  YARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAP 472
                 +   A      R   KV      Y  G    +++       L       K     
Sbjct: 897  SGTDLHSKTASTVGISREHAKVFNYGRIYGAGQPFAERLLMQFNHRLTQEQAAEKAKQMY 956

Query: 473  EEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTI 532
               +    +    +       +           V          + +L      A +++ 
Sbjct: 957  AVTKGIRRYILSKEGEWLVEELGISVERGEENSV---------NLQDLRKIQKDATKRSR 1007

Query: 533  ENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYT 592
                 +   +R        +       + +             +R+   T  +       
Sbjct: 1008 RKWNLVS--RRIWTGGTESQMFNKLETIAMSPSPKTPVLGCRISRALEPTAVKGE----- 1060

Query: 593  YGGKLTENIVQAVSRD---ILAEGMM---NATKAGYDIVLTVHDEIVCETPDTDEFNAS- 645
            +       +VQ+ + D   ++   M     A        +++HDE+       D + A+ 
Sbjct: 1061 FITSRVNWVVQSSAVDYLHLMLVAMKWLFEAYDIDGRFCISIHDEVRYLVHSKDRYRAAL 1120

Query: 646  ------MLYHLM 651
                  +L   M
Sbjct: 1121 ALQITNLLTRCM 1132


>gi|323699329|ref|ZP_08111241.1| Protein of unknown function DUF1998 [Desulfovibrio sp. ND132]
 gi|323459261|gb|EGB15126.1| Protein of unknown function DUF1998 [Desulfovibrio desulfuricans
           ND132]
          Length = 1005

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 29/177 (16%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFG--FDDHPVELWDCVHDPVMPQVLKEALEN 63
           +D ETR   D  + G    A+    +  +    +D     ++D   D +    L   L  
Sbjct: 835 LDIETRYSAD--EVGGWNRADR---MGVSIACLWDSGEEAMFDYEQDDM--DALVAHLR- 886

Query: 64  TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
               ++  N   F+  VL       +    +           LP  L  + E       +
Sbjct: 887 KFDLVIGFNHVKFDYAVL-----GGLHPFGFR---------SLP-NLDLLVEVNNRLGYR 931

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIFKRLEPL 178
           ++   + IA    G        +     +E    L  EYC+ DVTVTR+++      
Sbjct: 932 VKL--DNIASATLGAGKSADGLQALKWWKEGRLDLITEYCRQDVTVTRDVYLFGREH 986


>gi|270007326|gb|EFA03774.1| hypothetical protein TcasGA2_TC013885 [Tribolium castaneum]
          Length = 890

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 20/148 (13%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L     +D    L D +       +L E      +  + H +  +   L+   +L + + 
Sbjct: 296 LIQISTEDKD-YLIDALALRDKLSILNEVFTKNTIVKIFHGADKDIEWLQR--DLSLYVV 352

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T   A++   P    A+  A             L+ +FC    ++     +     
Sbjct: 353 NMFDTHQAAKALQYP----ALSLAF------------LMKKFCNVTPNKQFQLADWRIRP 396

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                   Y + D      I+K ++   
Sbjct: 397 LP-DELKSYAREDTHYLIYIYKMMKREL 423


>gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32]
 gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
 gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32]
 gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200]
          Length = 242

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 50/168 (29%), Gaps = 44/168 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF---------------------GFDDH 40
             + +D ET     + +     Y     +I                           D  
Sbjct: 9   RQIVLDTETTG---MNQGSGAVYLGH-RIIEIGCVEVINRRLTGRYFHQYINPGQAIDPE 64

Query: 41  PVELWDCVHDP--------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------ 86
            + +     +          + Q   E ++  ++  VAHN+ F+ + +   F++      
Sbjct: 65  AIAVHGITDERVANEPRFHQIAQQFIEFIDGAEI--VAHNANFDVSFMDHEFSMLPSKGP 122

Query: 87  -DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             + I   + TL +A+         L A+ +   + + +      L+ 
Sbjct: 123 KTMDICDILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLD 170


>gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
 gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
          Length = 1449

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 11/111 (9%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL 105
            +  + ++ +E   +    +VAHN+ F+   L      + +    +  I TL LAR    
Sbjct: 487 SEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLELARYLYP 544

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                   +   L     + G  L          E          +EA   
Sbjct: 545 EF------KRFGLGVLSKKFGVSLEQHHRAIYDAEATGHLAWIFVKEAMEK 589


>gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
 gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
          Length = 1449

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 11/111 (9%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL 105
            +  + ++ +E   +    +VAHN+ F+   L      + +    +  I TL LAR    
Sbjct: 487 SEEEVLRLFREF--SEGAILVAHNASFDMGFLNTSYRKYGIPEAENPVIDTLELARYLYP 544

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                   +   L     + G  L          E          +EA   
Sbjct: 545 EF------KRFGLGVLSKKFGVSLEQHHRAIYDAEATGHLAWIFVKEAMEK 589


>gi|255974861|ref|ZP_05425447.1| exonuclease [Enterococcus faecalis T2]
 gi|256763360|ref|ZP_05503940.1| exonuclease [Enterococcus faecalis T3]
 gi|255967733|gb|EET98355.1| exonuclease [Enterococcus faecalis T2]
 gi|256684611|gb|EEU24306.1| exonuclease [Enterococcus faecalis T3]
          Length = 183

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 31/144 (21%)

Query: 1   MATLFIDFETRS-------PIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-------- 45
           M     DFET S        I + K    +  ++   +             W        
Sbjct: 7   MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTL-----IKPETPFFWRNTQIHGI 61

Query: 46  ---DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
              D V+ P  P+V ++       +  +VAHN+ F+ +VL      + L+ P +  +CT+
Sbjct: 62  HESDVVNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 121

Query: 98  VLARSN---GLPSALKAVGEALKL 118
             +R          L  V E L +
Sbjct: 122 KTSRKLFPEFPNHKLNTVCENLNI 145


>gi|229472483|gb|ACQ72756.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRK 143


>gi|229544880|ref|ZP_04433605.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322]
 gi|256616762|ref|ZP_05473608.1| exonuclease [Enterococcus faecalis ATCC 4200]
 gi|256854034|ref|ZP_05559399.1| exonuclease [Enterococcus faecalis T8]
 gi|256963842|ref|ZP_05568013.1| exonuclease [Enterococcus faecalis HIP11704]
 gi|257081701|ref|ZP_05576062.1| exonuclease [Enterococcus faecalis E1Sol]
 gi|257420127|ref|ZP_05597121.1| exonuclease [Enterococcus faecalis T11]
 gi|307271788|ref|ZP_07553059.1| exonuclease [Enterococcus faecalis TX0855]
 gi|307278717|ref|ZP_07559784.1| exonuclease [Enterococcus faecalis TX0860]
 gi|307290260|ref|ZP_07570176.1| exonuclease [Enterococcus faecalis TX0411]
 gi|312900097|ref|ZP_07759413.1| exonuclease [Enterococcus faecalis TX0470]
 gi|229309981|gb|EEN75968.1| DNA-directed DNA polymerase III [Enterococcus faecalis TX1322]
 gi|256596289|gb|EEU15465.1| exonuclease [Enterococcus faecalis ATCC 4200]
 gi|256710977|gb|EEU26020.1| exonuclease [Enterococcus faecalis T8]
 gi|256954338|gb|EEU70970.1| exonuclease [Enterococcus faecalis HIP11704]
 gi|256989731|gb|EEU77033.1| exonuclease [Enterococcus faecalis E1Sol]
 gi|257161955|gb|EEU91915.1| exonuclease [Enterococcus faecalis T11]
 gi|306498681|gb|EFM68182.1| exonuclease [Enterococcus faecalis TX0411]
 gi|306504578|gb|EFM73781.1| exonuclease [Enterococcus faecalis TX0860]
 gi|306511666|gb|EFM80665.1| exonuclease [Enterococcus faecalis TX0855]
 gi|311292732|gb|EFQ71288.1| exonuclease [Enterococcus faecalis TX0470]
 gi|315030443|gb|EFT42375.1| exonuclease [Enterococcus faecalis TX4000]
 gi|315032587|gb|EFT44519.1| exonuclease [Enterococcus faecalis TX0017]
 gi|315143870|gb|EFT87886.1| exonuclease [Enterococcus faecalis TX2141]
 gi|315148698|gb|EFT92714.1| exonuclease [Enterococcus faecalis TX4244]
 gi|315151771|gb|EFT95787.1| exonuclease [Enterococcus faecalis TX0012]
 gi|315170466|gb|EFU14483.1| exonuclease [Enterococcus faecalis TX1342]
 gi|315174930|gb|EFU18947.1| exonuclease [Enterococcus faecalis TX1346]
 gi|327535953|gb|AEA94787.1| exonuclease [Enterococcus faecalis OG1RF]
          Length = 188

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 31/144 (21%)

Query: 1   MATLFIDFETRS-------PIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-------- 45
           M     DFET S        I + K    +  ++   +             W        
Sbjct: 12  MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTL-----IKPETPFFWRNTQIHGI 66

Query: 46  ---DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
              D V+ P  P+V ++       +  +VAHN+ F+ +VL      + L+ P +  +CT+
Sbjct: 67  HESDVVNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 126

Query: 98  VLARSN---GLPSALKAVGEALKL 118
             +R          L  V E L +
Sbjct: 127 KTSRKLFPEFPNHKLNTVCENLNI 150


>gi|221201212|ref|ZP_03574252.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221179062|gb|EEE11469.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 398

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 22/136 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWD------------CVHD 50
           +F+D ET                ++  +  + +    +P +                V D
Sbjct: 39  VFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRD 98

Query: 51  PVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL 105
                 L  AL         VAHN+ F+R  L+A F            +CT+ L+R+   
Sbjct: 99  APSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP-DVLCTVRLSRALFP 157

Query: 106 ---PSALKAVGEALKL 118
                 L A+     L
Sbjct: 158 RESRHGLDALIARHGL 173


>gi|221206334|ref|ZP_03579347.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221173643|gb|EEE06077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
          Length = 375

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 22/136 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWD------------CVHD 50
           +F+D ET                ++  +  + +    +P +                V D
Sbjct: 16  VFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRD 75

Query: 51  PVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL 105
                 L  AL         VAHN+ F+R  L+A F            +CT+ L+R+   
Sbjct: 76  APSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP-DVLCTVRLSRALFP 134

Query: 106 ---PSALKAVGEALKL 118
                 L A+     L
Sbjct: 135 RESRHGLDALIARHGL 150


>gi|221213616|ref|ZP_03586590.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166405|gb|EED98877.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
          Length = 375

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 22/136 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWD------------CVHD 50
           +F+D ET                ++  +  + +    +P +                V D
Sbjct: 16  VFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRD 75

Query: 51  PVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL 105
                 L  AL         VAHN+ F+R  L+A F            +CT+ L+R+   
Sbjct: 76  APSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP-DVLCTVRLSRALFP 134

Query: 106 ---PSALKAVGEALKL 118
                 L A+     L
Sbjct: 135 RESRHGLDALIARHGL 150


>gi|189349710|ref|YP_001945338.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189333732|dbj|BAG42802.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 375

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 22/136 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWD------------CVHD 50
           +F+D ET                ++  +  + +    +P +                V D
Sbjct: 16  VFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRD 75

Query: 51  PVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL 105
                 L  AL         VAHN+ F+R  L+A F            +CT+ L+R+   
Sbjct: 76  APSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP-DVLCTVRLSRALFP 134

Query: 106 ---PSALKAVGEALKL 118
                 L A+     L
Sbjct: 135 RESRHGLDALIARHGL 150


>gi|161525562|ref|YP_001580574.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342991|gb|ABX16077.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 398

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 22/136 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWD------------CVHD 50
           +F+D ET                ++  +  + +    +P +                V D
Sbjct: 39  VFVDLETTGGTPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMVRD 98

Query: 51  PVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL 105
                 L  AL         VAHN+ F+R  L+A F            +CT+ L+R+   
Sbjct: 99  APSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP-DVLCTVRLSRALFP 157

Query: 106 ---PSALKAVGEALKL 118
                 L A+     L
Sbjct: 158 RESRHGLDALIARHGL 173


>gi|29377213|ref|NP_816367.1| exonuclease [Enterococcus faecalis V583]
 gi|227554221|ref|ZP_03984268.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22]
 gi|229549147|ref|ZP_04437872.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200]
 gi|255971865|ref|ZP_05422451.1| exonuclease [Enterococcus faecalis T1]
 gi|256957963|ref|ZP_05562134.1| exonuclease [Enterococcus faecalis DS5]
 gi|256961017|ref|ZP_05565188.1| exonuclease [Enterococcus faecalis Merz96]
 gi|257079901|ref|ZP_05574262.1| exonuclease [Enterococcus faecalis JH1]
 gi|257087703|ref|ZP_05582064.1| exonuclease [Enterococcus faecalis D6]
 gi|293384593|ref|ZP_06630459.1| exonuclease [Enterococcus faecalis R712]
 gi|293386822|ref|ZP_06631393.1| exonuclease [Enterococcus faecalis S613]
 gi|294779917|ref|ZP_06745299.1| exonuclease [Enterococcus faecalis PC1.1]
 gi|300861254|ref|ZP_07107341.1| exonuclease [Enterococcus faecalis TUSoD Ef11]
 gi|307269234|ref|ZP_07550588.1| exonuclease [Enterococcus faecalis TX4248]
 gi|307276973|ref|ZP_07558083.1| exonuclease [Enterococcus faecalis TX2134]
 gi|312906419|ref|ZP_07765427.1| exonuclease [Enterococcus faecalis DAPTO 512]
 gi|312951911|ref|ZP_07770799.1| exonuclease [Enterococcus faecalis TX0102]
 gi|312979422|ref|ZP_07791110.1| exonuclease [Enterococcus faecalis DAPTO 516]
 gi|29344679|gb|AAO82437.1| exonuclease [Enterococcus faecalis V583]
 gi|227176668|gb|EEI57640.1| DNA-directed DNA polymerase III [Enterococcus faecalis HH22]
 gi|229305701|gb|EEN71697.1| DNA-directed DNA polymerase III [Enterococcus faecalis ATCC 29200]
 gi|255962883|gb|EET95359.1| exonuclease [Enterococcus faecalis T1]
 gi|256948459|gb|EEU65091.1| exonuclease [Enterococcus faecalis DS5]
 gi|256951513|gb|EEU68145.1| exonuclease [Enterococcus faecalis Merz96]
 gi|256987931|gb|EEU75233.1| exonuclease [Enterococcus faecalis JH1]
 gi|256995733|gb|EEU83035.1| exonuclease [Enterococcus faecalis D6]
 gi|291078139|gb|EFE15503.1| exonuclease [Enterococcus faecalis R712]
 gi|291083825|gb|EFE20788.1| exonuclease [Enterococcus faecalis S613]
 gi|294453029|gb|EFG21449.1| exonuclease [Enterococcus faecalis PC1.1]
 gi|295113676|emb|CBL32313.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
           [Enterococcus sp. 7L76]
 gi|300850293|gb|EFK78043.1| exonuclease [Enterococcus faecalis TUSoD Ef11]
 gi|306506396|gb|EFM75556.1| exonuclease [Enterococcus faecalis TX2134]
 gi|306514453|gb|EFM83014.1| exonuclease [Enterococcus faecalis TX4248]
 gi|310627573|gb|EFQ10856.1| exonuclease [Enterococcus faecalis DAPTO 512]
 gi|310630100|gb|EFQ13383.1| exonuclease [Enterococcus faecalis TX0102]
 gi|311287793|gb|EFQ66349.1| exonuclease [Enterococcus faecalis DAPTO 516]
 gi|315025497|gb|EFT37429.1| exonuclease [Enterococcus faecalis TX2137]
 gi|315035108|gb|EFT47040.1| exonuclease [Enterococcus faecalis TX0027]
 gi|315154299|gb|EFT98315.1| exonuclease [Enterococcus faecalis TX0031]
 gi|315159608|gb|EFU03625.1| exonuclease [Enterococcus faecalis TX0312]
 gi|315162098|gb|EFU06115.1| exonuclease [Enterococcus faecalis TX0645]
 gi|315573774|gb|EFU85965.1| exonuclease [Enterococcus faecalis TX0309B]
 gi|315580288|gb|EFU92479.1| exonuclease [Enterococcus faecalis TX0309A]
 gi|323481659|gb|ADX81098.1| DNA polymerase III, epsilon subunit, 3'-5' exonuclease family
           protein [Enterococcus faecalis 62]
 gi|329578017|gb|EGG59432.1| exonuclease [Enterococcus faecalis TX1467]
          Length = 177

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 31/144 (21%)

Query: 1   MATLFIDFETRS-------PIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-------- 45
           M     DFET S        I + K    +  ++   +             W        
Sbjct: 1   MNFYAFDFETASYDKHSACSIAIVKVENSRIVDEFYTL-----IKPETPFFWRNTQIHGI 55

Query: 46  ---DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
              D V+ P  P+V ++       +  +VAHN+ F+ +VL      + L+ P +  +CT+
Sbjct: 56  HESDVVNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 115

Query: 98  VLARSN---GLPSALKAVGEALKL 118
             +R          L  V E L +
Sbjct: 116 KTSRKLFPEFPNHKLNTVCENLNI 139


>gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
 gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
          Length = 298

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 57/182 (31%), Gaps = 40/182 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVE--LWDCVHDPVMPQVLK 58
               +D ET         G+  Y +   +I        D+ +       +          
Sbjct: 13  DYCVLDTETT--------GLSSYYD--EIIEIGILKVRDNKIVDRYSQLIKPDYEIDSFI 62

Query: 59  EAL---------ENTDV--------------TIVAHNSYFERTVLKACFNLDIPIHRWIC 95
            +L         E   +               I+ HN+ F+   L A FN+++  ++++ 
Sbjct: 63  TSLTGITNEMVKEMPAINFVMSDVLSFIGKDVIIGHNTSFDIRFLNAGFNIELD-NKYMD 121

Query: 96  TLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           T+  AR          L  +   L LS+ +     + IA     ++ +    +     ++
Sbjct: 122 TMQFARKLFPELKHHRLSDLTSYLGLSNNEHRSIADCIATKELYDSIKDTMTKRGLGIQD 181

Query: 153 AW 154
            W
Sbjct: 182 LW 183


>gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
 gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
          Length = 1470

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 44/149 (29%), Gaps = 38/149 (25%)

Query: 5   FIDF-E-TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD------- 50
            ID  E T    D+   G+     D  + L A   ++  V        D           
Sbjct: 446 SIDLKEATYVVFDVETTGLSA-VYDTIIELAAVKMENGQVVDTFESFIDPGRPLSATIIN 504

Query: 51  ---------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHR 92
                            + +  KE   +    +VAHN+ F+   L   +    +D   + 
Sbjct: 505 LTGITDDMLKGSDDIETVLKRFKEWCGDA--VLVAHNASFDMGFLNTAYSKAGIDKAENA 562

Query: 93  WICTLVLARSNGLP---SALKAVGEALKL 118
            I TL LAR          L  + +   +
Sbjct: 563 VIDTLELARFLYPHFKNHRLNTLTKKFNI 591


>gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
 gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
          Length = 707

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNGL-- 105
             +    +    +    +VAHN+ F+   L   +A   +       + TL+L+       
Sbjct: 586 DTVLPAFRAYCAD--TVLVAHNAAFDMRFLQLKEASTGVRFD-QPVLDTLLLSAVLHPNQ 642

Query: 106 -PSALKAVGEALKL 118
               L+A+ E L +
Sbjct: 643 ESHRLEAIAERLGV 656


>gi|295677334|ref|YP_003605858.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
 gi|295437177|gb|ADG16347.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
          Length = 382

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           D V      + +  AL         VAHN+ F+R  L+       +       +CT+ L+
Sbjct: 71  DMVRGAPTFESIAPALFERLNGKLFVAHNASFDRGFLRSEFRRAGIAFDP-DVLCTVRLS 129

Query: 101 RSNGLP---SALKAVGEALKL 118
           R+         L A+ E   L
Sbjct: 130 RALFPGEKRHGLDALVERHAL 150


>gi|262212395|gb|ACY35814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 181

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 36/138 (26%), Gaps = 8/138 (5%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A+ G+ +V ADL+GIE R+L+                       A    +     
Sbjct: 7   RRLFMATPGQVMVGADLSGIELRMLSHYLARYDTYFGDNLLNGDIHQLNADKIGII---- 62

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A  Y  G +                A   +   A  E     +    
Sbjct: 63  ----RKLVKTVTYAFLYGAGNEKIGYSYDRLLSPQKVKAKGREIKEAFIEAIPGLSDLLS 118

Query: 485 MQENHPEHAIEDLFIGTA 502
             +            G  
Sbjct: 119 AVKCAANRGFVKGIDGRK 136


>gi|157325092|ref|YP_001468517.1| gp137 [Listeria phage A511]
 gi|66733100|gb|AAY52918.1| gp137 [Listeria phage A511]
          Length = 278

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 17/80 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------VM 53
            +  D ET + +     G          ++ +  + +         H            +
Sbjct: 207 VIAWDLETNTLLP-EMLGAKP-------LVMSVSWKEGQGVTIPLEHRESHWEDHELEEI 258

Query: 54  PQVLKEALENTDVTIVAHNS 73
              +KE + + ++  V HN 
Sbjct: 259 YNYIKEFVADKNIIKVGHNI 278


>gi|89902537|ref|YP_525008.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
 gi|89347274|gb|ABD71477.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
          Length = 722

 Score = 46.3 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 34/142 (23%)

Query: 6   IDFETRSPID-----LTKCGICKYA-------EDVCVI-----LFAFGFDDHPVELWDCV 48
            D ET          + + G  +         E    +     L +       V++    
Sbjct: 535 FDTETTGLNPAEGDEIIQIGAARIVNKKILRQESFEQLVNPDRLISAA----SVQIHGIT 590

Query: 49  HDPVM----PQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            D V+       +  A      D  +VAHN+ F+   L   +A   L       + TL+L
Sbjct: 591 QDRVIGQPRIGEVLPAFHAFAQDTVLVAHNAAFDMKFLQLKEAATGLAFH-QPVLDTLLL 649

Query: 100 ARSNGL---PSALKAVGEALKL 118
           +           L+A+ E   +
Sbjct: 650 SAVVHPNQESHRLEAIAERFNI 671


>gi|307578800|gb|ADN62769.1| ribonuclease D [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 339

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 46/175 (26%), Gaps = 26/175 (14%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D  + +   V    M   L   L   +V  + H++  +    K      
Sbjct: 13  PELALVQIAIGDEILLVDPLVPG--MTDALGLWLAAPNVIKIMHSASEDLIAFKYACG-- 68

Query: 88  IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +       T + A   GL   +   K V +   +   K E   + + R            
Sbjct: 69  VLPRPLFDTQIGAALTGLGGGMGYQKLVAKVTNVELGKGETRSDWMHRPLTPAQ------ 122

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                         +Y   DV     +   L    ++     +L++        +
Sbjct: 123 -------------LDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCTRLTDNI 164


>gi|229472181|gb|ACQ72605.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GIFRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKKASERGFIKAIDGRK 143


>gi|254480788|ref|ZP_05094035.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214039371|gb|EEB80031.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 244

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 33/150 (22%)

Query: 1   MATLFIDFETRSP---------------IDLTKCGICKYAE----DVCVILFAFGFDDHP 41
           M  + +D ET                  +D  +     Y +    +  +   A       
Sbjct: 1   MRQIVLDTETTGLEVSQGHRIIEIGCVELDTRRLTGNHYHQYINPNREIDQGAIEVHGIT 60

Query: 42  VELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIH--------R 92
            E       P   +V +E LE      +V HN+ F+   L       +           +
Sbjct: 61  NEF--LKDKPSFERVFREFLEFVEGSELVIHNAPFDLGFL-NSEIQRLEPDAPRLEDRCK 117

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TLV+AR        +L A+ +   + +
Sbjct: 118 IVDTLVMARGKHPGQRNSLDALCQRYGVDN 147


>gi|206561350|ref|YP_002232115.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
 gi|198037392|emb|CAR53327.1| possible DNA polymerase/helicase [Burkholderia cenocepacia J2315]
          Length = 375

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 34/142 (23%)

Query: 4   LFIDFETR--SPID--LTKCGICKYAEDVCVILFAFGFDD---HPVELWD---------- 46
           +F+D ET   S  D  +T+ G+        +            +P +             
Sbjct: 16  VFVDLETTGGSSADHRITEIGVV------EIGPLGVSTWTSLVNPGQAIPPFIQQLTGIS 69

Query: 47  --CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
              V D      L  AL         VAHN+ F+R  L+A F    L       +CT+ L
Sbjct: 70  DAMVRDAPTFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLTFNP-DVLCTVRL 128

Query: 100 ARSNGL---PSALKAVGEALKL 118
           +R+         L A+ E   L
Sbjct: 129 SRALFPRESRHGLDALIERHGL 150


>gi|126729411|ref|ZP_01745225.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
 gi|126710401|gb|EBA09453.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Sagittula stellata E-37]
          Length = 468

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 68  IVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN---GLPSALKAVGEAL 116
           IVAHN+ F+   L        ++   H  + T++L+           L A+ + L
Sbjct: 359 IVAHNAPFDMAFLHRHKTRMGVEW-THPILDTVLLSAVLFGASQTHTLDALCDRL 412


>gi|150398789|ref|YP_001322556.1| exonuclease RNase T and DNA polymerase III [Methanococcus vannielii
           SB]
 gi|150011492|gb|ABR53944.1| Exonuclease RNase T and DNA polymerase III [Methanococcus vannielii
           SB]
          Length = 189

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 50/206 (24%), Gaps = 59/206 (28%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-------ELWDCVH------ 49
            +F+D ET                   +   ++   D  +       + +   H      
Sbjct: 2   YVFLDTETTGLHP------------GQIAQLSYLVTDEELNIKKAFNQYYSVEHMSRSAA 49

Query: 50  -----DPVMPQVL----------KEALENTDV-TIVAHNSYFERTVLKA---CFNLDIPI 90
                   + + L          KE L +     I+ HN  F+   LKA       +   
Sbjct: 50  RIHGLTQDILEELSSGLVFEDTIKEVLSDLKYSVIIGHNISFDIRFLKAEIERLGEEYVP 109

Query: 91  HRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN---- 146
               CT+              + +   +   K  +  EL+    +       + +N    
Sbjct: 110 KEKFCTMC---------HFTKICKIPGVRQYKRPKLIELMDYLKQCPKEGLKFTKNTYGC 160

Query: 147 --KPNHREAWRLFGEYCKGDVTVTRE 170
                H   +     Y      V   
Sbjct: 161 SDVGFHDARFDTGVMYLCYKKGVELR 186


>gi|229472517|gb|ACQ72773.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 189

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 7   PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 63

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 64  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 117

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 118 DKLLAAIKTASERGFIKAIDGRR 140


>gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 315

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 69/254 (27%), Gaps = 31/254 (12%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPNHREAWRL 156
                +     L+ +   L +         + I      +       + N+  ++     
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEEGNRKVNKAVLDE 186

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y    V       KR            YLD         V V         +     
Sbjct: 187 TAVYEA--VKEMLVCNKRNVEWLRCMNVGSYLDIKAFYPVMRVKVKGRKKYV--LTEILE 242

Query: 217 KLDQELESLTYGLV 230
              +E+ +      
Sbjct: 243 DDVKEICTSLKCEP 256


>gi|205351437|ref|YP_002225238.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205271218|emb|CAR36006.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326626460|gb|EGE32803.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 783

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKTALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|213616459|ref|ZP_03372285.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 373

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDERQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKYAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|169601620|ref|XP_001794232.1| hypothetical protein SNOG_03678 [Phaeosphaeria nodorum SN15]
 gi|160705977|gb|EAT88883.2| hypothetical protein SNOG_03678 [Phaeosphaeria nodorum SN15]
          Length = 721

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 22/139 (15%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---- 105
           + +MP  LK+ LE  D+  V      + T L+   N+            L+R + L    
Sbjct: 198 EELMPPTLKKILETPDILKVGVAVKGDFTRLERYLNI--QPQGVF---ELSRLHNLVEGN 252

Query: 106 -------PSALKAV-GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                   + L  +  + L+     + +G++L            + + +        +  
Sbjct: 253 ITSAQQVSNKLVGLAAQVLQHLQLPLYKGEQL---ADDPADTASVRESDWS-KPLDLQQ- 307

Query: 158 GEYCKGDVTVTREIFKRLE 176
            +Y   D      ++  LE
Sbjct: 308 IQYAAADAYAGFRLYDILE 326


>gi|94311147|ref|YP_584357.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
 gi|93354999|gb|ABF09088.1| DNA polymerase III epsilon subunit [Cupriavidus metallidurans CH34]
          Length = 241

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 57/192 (29%), Gaps = 42/192 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV L                       A    
Sbjct: 1   MRQIVLDTETTG---LNHATGDRLIEIGCVELVNRRLTGRHLHFYVNPERDIHEDAIAV- 56

Query: 39  DHPVELWDCVHDP----VMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIHR- 92
                  D + D      +   +++ +++ ++ I  HN+ F+   L      LD+P  R 
Sbjct: 57  --HGITLDFLADKPKFAEIVNDVRDFVQDAELII--HNAPFDLGFLDMEFQRLDLPPFRQ 112

Query: 93  ----WICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
                I TL  AR        +L A+ + L +S+        L+      E +  +    
Sbjct: 113 HASNVIDTLREARQMFPGKRNSLDALCDRLGVSNSHRTLHGALLDAELLAEVYLAMTRGQ 172

Query: 147 KPNHREAWRLFG 158
                +      
Sbjct: 173 NSLVIDMLDGAA 184


>gi|325282490|ref|YP_004255031.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
 gi|324314299|gb|ADY25414.1| DNA polymerase III, epsilon subunit [Deinococcus proteolyticus MRP]
          Length = 185

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 46/147 (31%), Gaps = 32/147 (21%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVI-----------------LFAFGFDDHPV 42
           +  D ET         + + G  +   D  V+                      +    +
Sbjct: 12  VVFDLETTGLSPERDGIVEIGALR-IRDGRVVTEDPYQTLVRPQNSLGESVTIPWRAERI 70

Query: 43  ELWD---CVHDPVMPQVLKEALENT-DVTIVAHNSYFERTVL---KACFNLDIPIHRWIC 95
                   V  P + QVL E LE   D  +VAHN  F+   +        L     R IC
Sbjct: 71  HGISNEMVVAAPSIAQVLPEFLEWAGDAPLVAHNIGFDSGFMRAAARHCGLRWAPQREIC 130

Query: 96  TLVLARSNGL---PSALKAVGEALKLS 119
           T+ L+R          L ++   L LS
Sbjct: 131 TVQLSRRAFPRERRHNLDSLAGRLGLS 157


>gi|229472507|gb|ACQ72768.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 180

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V ADL+GIE R+L+      +  +        D +     +    
Sbjct: 9   PRFRALFLPSPGQVMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDTHQVNADKI--- 65

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 66  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 119

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 120 DKLLAAIKTASERGFIKAIDGRK 142


>gi|167587486|ref|ZP_02379874.1| DNA polymerase III subunit epsilon [Burkholderia ubonensis Bu]
          Length = 242

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 47/163 (28%), Gaps = 38/163 (23%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-----DVCVILFAFGF 37
           M  + +D ET                       LT   +  Y       D      A   
Sbjct: 1   MRQIILDTETTGLNARAGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPG----ALAV 56

Query: 38  DDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI----- 90
                E   D      +   +++ +      ++ HN+ F+   L      LD+P      
Sbjct: 57  HGLTTEFLSDKPKFAEVVDQIRDFV--KGAELIIHNAPFDLGFLDAEFARLDLPPFTEHC 114

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              I TLV A+        +L A+ +   +S+        L+ 
Sbjct: 115 AGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLD 157


>gi|22126970|ref|NP_670393.1| DNA polymerase III subunit epsilon [Yersinia pestis KIM 10]
 gi|45442535|ref|NP_994074.1| DNA polymerase III subunit epsilon [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597279|ref|YP_071470.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
           32953]
 gi|108806557|ref|YP_650473.1| DNA polymerase III subunit epsilon [Yersinia pestis Antiqua]
 gi|108813076|ref|YP_648843.1| DNA polymerase III subunit epsilon [Yersinia pestis Nepal516]
 gi|145598912|ref|YP_001162988.1| DNA polymerase III subunit epsilon [Yersinia pestis Pestoides F]
 gi|149366915|ref|ZP_01888949.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
 gi|153948473|ref|YP_001400036.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
           31758]
 gi|162419464|ref|YP_001607083.1| DNA polymerase III subunit epsilon [Yersinia pestis Angola]
 gi|165924368|ref|ZP_02220200.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938341|ref|ZP_02226899.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011939|ref|ZP_02232837.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211805|ref|ZP_02237840.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399939|ref|ZP_02305457.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419869|ref|ZP_02311622.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424264|ref|ZP_02316017.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023355|ref|YP_001719860.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
           YPIII]
 gi|186896384|ref|YP_001873496.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928251|ref|YP_002346126.1| DNA polymerase III subunit epsilon [Yersinia pestis CO92]
 gi|229841013|ref|ZP_04461172.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843118|ref|ZP_04463264.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229895464|ref|ZP_04510636.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
 gi|229903519|ref|ZP_04518632.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
 gi|270487300|ref|ZP_06204374.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
 gi|294503098|ref|YP_003567160.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
 gi|21960013|gb|AAM86644.1|AE013910_6 DNA polymerase III, epsilon subunit [Yersinia pestis KIM 10]
 gi|45437400|gb|AAS62951.1| DNA polymerase III, epsilon chain [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590561|emb|CAH22202.1| DNA polymerase III, epsilon chain [Yersinia pseudotuberculosis IP
           32953]
 gi|108776724|gb|ABG19243.1| DNA polymerase III, epsilon subunit [Yersinia pestis Nepal516]
 gi|108778470|gb|ABG12528.1| DNA polymerase III, epsilon subunit [Yersinia pestis Antiqua]
 gi|115346862|emb|CAL19748.1| DNA polymerase III, epsilon chain [Yersinia pestis CO92]
 gi|145210608|gb|ABP40015.1| DNA polymerase III, epsilon subunit [Yersinia pestis Pestoides F]
 gi|149291289|gb|EDM41364.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
 gi|152959968|gb|ABS47429.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162352279|gb|ABX86227.1| DNA polymerase III, epsilon subunit [Yersinia pestis Angola]
 gi|165913719|gb|EDR32338.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923428|gb|EDR40560.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989106|gb|EDR41407.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207576|gb|EDR52056.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962610|gb|EDR58631.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050647|gb|EDR62055.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057113|gb|EDR66876.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749889|gb|ACA67407.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186699410|gb|ACC90039.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679289|gb|EEO75392.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
 gi|229689465|gb|EEO81526.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697379|gb|EEO87426.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701619|gb|EEO89646.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
 gi|262361135|gb|ACY57856.1| DNA polymerase III subunit epsilon [Yersinia pestis D106004]
 gi|270335804|gb|EFA46581.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
 gi|294353557|gb|ADE63898.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
 gi|320014218|gb|ADV97789.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 254

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVINRRLTGRNFHVYVKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDI 88
                  + D  +    K    +             +V HN+ F+   +         DI
Sbjct: 61  EAYGVHGISDEFLAD--KPTFADITPEFLDFIRGAELVIHNAAFDIGFMDYEFRMLQQDI 118

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P     CT    L++AR         L A+ +  ++ + K      L+ 
Sbjct: 119 PKTETFCTITDSLLMARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLD 167


>gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
 gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
          Length = 1446

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/412 (10%), Positives = 100/412 (24%), Gaps = 68/412 (16%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH---PVEL----------WD 46
           +  D ET    +    + + G  K      V       +     P  +           D
Sbjct: 398 VVFDLETTGLSNTRDEIIEFGGVKIKNREEVGRLQMFINPKRTIPAHISNLTHITQNDVD 457

Query: 47  CVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           C          L E + ++   +VAHN+ F+   +         D   +  I TL L+ +
Sbjct: 458 CAKPIEDALDELLEFIGDS--ILVAHNATFDVGFMNAACRKTGRDELTNPVIDTLPLSYA 515

Query: 103 NGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                     L +V    ++S     EG           +       N+  H        
Sbjct: 516 MLPDEQKRFNLGSVCRHYRVS--YDGEGAHRADYDADVLSQVMYNMMNQLGHDATLDTL- 572

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYL---------DQTINDRGYCVDVALAHTLNQ 209
                 + +     K       +    +++          + + +           ++ +
Sbjct: 573 ------MDMEGGCEKYSSKKPYERNRPYHMTVFAKNKDGLKELFELITLSHTQYLVSMGK 626

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK-K 268
                R   + E+               +       E               +  +    
Sbjct: 627 ENGQPRIIKE-EISKKWDNGNLLIGSSCQNGEIF--ELAHTRSKK------ELFEAMAYY 677

Query: 269 LTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN 328
              +   +   +    R ++  +  L        +      +  A   G+          
Sbjct: 678 DYIELQPLDCYKNMLDRGSITDVEDL--------KWYLQFIYDTAKEAGKMVIASSDAHY 729

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVAD 380
           +    +   ++      +  +      PL I +   R    ++  + L+  D
Sbjct: 730 VNPNEKRLRDVYINAKAIGNARH----PLYIYNKQARKA-TSNPNQHLLTTD 776


>gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
 gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
          Length = 1503

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDDHPVE--------------L 44
            +  D ET         + + G  K  +   V  F+   +                   +
Sbjct: 467 YIVFDIETTGFSAIKDKIIEIGAVKVKDGAIVEKFSTFVNPKRPIPFEITQLTSITDEMV 526

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
            D      +     E + +    +VAHN+ F+   ++       ++        T+ LAR
Sbjct: 527 LDAPDIESVLPEFLEFVGDG--VLVAHNAGFDVGFIEQNCRYQEIEPDFVSV-DTVALAR 583

Query: 102 SNGLPSA---LKAVGEALKLS 119
                 +   L  V +AL +S
Sbjct: 584 VLLPTLSKYKLNIVAKALGIS 604


>gi|289826177|ref|ZP_06545289.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 783

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDERQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKYAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|254508462|ref|ZP_05120581.1| ribonuclease D [Vibrio parahaemolyticus 16]
 gi|219548574|gb|EED25580.1| ribonuclease D [Vibrio parahaemolyticus 16]
          Length = 386

 Score = 46.3 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 19/138 (13%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F      +  + T
Sbjct: 62  FDGEQLSLIDPTELDEMT-PFVELLQDTSVLKVLHACGEDLEVFQNSFG--CLPYPMVDT 118

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            V+A   G   +                    L     K E+      R   + +     
Sbjct: 119 QVMAAFLGHGLSTGFASLV----------EHYLQVELDKSESRTDWLARPLTDKQLD--- 165

Query: 157 FGEYCKGDVTVTREIFKR 174
              Y   DV     ++++
Sbjct: 166 ---YAAADVFYLLPLYEK 180


>gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
 gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
          Length = 378

 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 22/136 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWDCV-------HDPVMPQ 55
           +F+D ET                ++  +  + +    +P +             D ++  
Sbjct: 17  VFVDLETTGGSPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQLTGISDEMVRD 76

Query: 56  V-----LKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL 105
                 L  AL         VAHN+ F+R  L+A F            +CT+ L+R+   
Sbjct: 77  APSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP-DVLCTVRLSRALFP 135

Query: 106 ---PSALKAVGEALKL 118
                 L A+ E   L
Sbjct: 136 RETRHGLDALIERHGL 151


>gi|168184675|ref|ZP_02619339.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Bf]
 gi|237795168|ref|YP_002862720.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum
           Ba4 str. 657]
 gi|182672241|gb|EDT84202.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Bf]
 gi|229261088|gb|ACQ52121.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           Ba4 str. 657]
          Length = 195

 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 25/122 (20%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVILFA----FGFD--DHPVELWDCVH 49
           M  +FID ET          LT C           + FA    F  D  +   E      
Sbjct: 1   MKKIFIDTETTGLEPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAIHGFS 60

Query: 50  DPVMP-----QVLKEALEN-----TDVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
              +      +  K+          +   +AHN  F+R           +++     + C
Sbjct: 61  VEKLKILSKGKKFKDLASEISSDLKNGIFIAHNVNFDRKFVTAEFNRLNDMNWIPKEFFC 120

Query: 96  TL 97
           T+
Sbjct: 121 TM 122


>gi|315612858|ref|ZP_07887769.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sanguinis ATCC 49296]
 gi|315314968|gb|EFU63009.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus sanguinis ATCC 49296]
          Length = 830

 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 82/284 (28%), Gaps = 40/284 (14%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51
             + +D E   T S   + + GI    E+  +I   +  D +P E  D            
Sbjct: 8   RYVVVDLEATSTGSKAKIIQVGI-VVIENGEIID-QYATDVNPHEPLDSHIKELTGLTDQ 65

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                     +   + E +++     VAHN  F+  +L         ++   R   T+ L
Sbjct: 66  RLAAAPEFSQVAGKIFELVKDG--IFVAHNVQFDANLLAEFLFFEGYELRTPRV-DTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQKMEE-------GKELIARFCKGETHECLYDRNKPN 149
           A+          L  + + L +  +             EL+    +              
Sbjct: 123 AQVLYPQFEKYNLGILCQELGIELEHAHTALSDAQATAELLLYMRQKLFELPKGLLESLL 182

Query: 150 HREAWRLFGEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                 L+  Y    +V   + +     P   +   L+   ++       +    A  ++
Sbjct: 183 DLADNLLYESYLVIEEVYQQQSL--LSSPDLMELHGLFLRKESKGLVPRKLSKDFAKNIS 240

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
            +   +R +     E +   L        + +T L    G  L 
Sbjct: 241 LLGLEDRPQQLDFAEKIEQLLEEHQTSFIQAQTGLGKTYGYLLP 284


>gi|300767630|ref|ZP_07077540.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300494615|gb|EFK29773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 182

 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75
           L K     +  +V +         H  ++ D    P + Q +    +  D  ++AHN+ F
Sbjct: 42  LIKPESDFFWRNVQIHGI------HEADVADAPKFPDVWQHIAPFFQR-DRLVIAHNAPF 94

Query: 76  ERTVLKA---CFNLDIPIHRWICTLVLA---RSNGLPSALKAVGEALKLSSQ 121
           +  VL+     + +  P +  + T+  +           L  V +AL +  Q
Sbjct: 95  DIGVLRNTLAHYGISAPEYLSMDTVKTSQRFYPELPNHKLDTVCQALDIDLQ 146


>gi|16759092|ref|NP_454709.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29140642|ref|NP_803984.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213418089|ref|ZP_03351159.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213857315|ref|ZP_03384286.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|25288546|pir||AE0514 DNA polymerase II [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16501382|emb|CAD01253.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136266|gb|AAO67833.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 783

 Score = 46.3 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDERQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKYAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|319400807|gb|EFV89026.1| putative dnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis FRI909]
          Length = 902

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 90/295 (30%), Gaps = 41/295 (13%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL---ARSNGL 105
            +   + + +++     VAHN  F+   +K  F   N+     R + TL L   A     
Sbjct: 73  EVADDIYQLIKD--CVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLELFKIAFPTDK 130

Query: 106 PSALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
              L A+ E+  +                K +I  F K E       +      +  + +
Sbjct: 131 SYQLSALAESHHIPLNNAHRADEDATTTAKLMIKAFEKFEQLHLDTQKQLYYLSKNLK-Y 189

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI--------NDRGYCVDVALAHTLNQ 209
             Y      V    ++   P    EQ    + +          N  G   D+    T + 
Sbjct: 190 DLYHILFEMV--RNYQTKPPNIQFEQFEQIIYRKQIDLKKPAVNFDGTLKDLYKNVTQSL 247

Query: 210 IVDVE------RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
            +            +  +L      ++ +     K   +L   T  ++E       +T  
Sbjct: 248 NLTYRPQQLYLAEIILDQLMHSDKAMIEAPLGSGKSLAYLLAATMYNIETGRHVMISTNT 307

Query: 261 RVLSS--NKKLTPQAIQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
           ++L S   +K  P    V + ++     +S    ++  L+  +  D      +  
Sbjct: 308 KLLQSQLLEKDIPLLNDVLDFKINASLIKSKNDYISLGLISQILKDDTSNYEVNI 362


>gi|312375236|gb|EFR22650.1| hypothetical protein AND_14417 [Anopheles darlingi]
          Length = 782

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 40/164 (24%), Gaps = 37/164 (22%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK- 110
            +PQ L + L + ++  V                    +  +      AR       LK 
Sbjct: 116 KLPQELYDLLNDDNIIKVG-------------------VSPYED----ARLLREDYKLKV 152

Query: 111 -------AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                   + E   L    +      +               +     +      +Y   
Sbjct: 153 ESTLDLRFMAERAGLEPFGIARLANEV--LGLTLDKHWKIRCSDWEAPDLSDRQIKYAAS 210

Query: 164 DVTVTREIFKRLE----PLSSKEQELWYLDQTINDRGYCVDVAL 203
           D  V  E+FK+      P          LDQ + +    +D   
Sbjct: 211 DAHVAVELFKKFAYKLVPHYPWTSRKVVLDQVLEEMDCFMDQPY 254


>gi|172057786|ref|YP_001814246.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Exiguobacterium sibiricum 255-15]
 gi|171990307|gb|ACB61229.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium
           sibiricum 255-15]
          Length = 937

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 29/146 (19%)

Query: 2   ATLFIDFETR-----SPIDLTKCGICKYAEDVCV--ILFAFGFDDHPVELW--------- 45
             + +D ET      S  ++ + G+    ED  +   L AF     P+  +         
Sbjct: 4   KFVVVDLETTGHSIKSGDEMIEIGV-AVIEDGQITERLSAFVRPQKPIPPFISQLTGITD 62

Query: 46  -DCVHDP---VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV 98
            D         +   + + L +  V  VAHN  F+ T L                I T+ 
Sbjct: 63  EDVAQAESFATIAPRVLQLL-DGGV-FVAHNVQFDLTFLNEALEEEGYLPYTGPVIDTVE 120

Query: 99  LARSNGL---PSALKAVGEALKLSSQ 121
           LAR         +L  + EAL+L+  
Sbjct: 121 LARILLPTAESHSLSHLTEALQLTHH 146


>gi|254448791|ref|ZP_05062248.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
           HTCC5015]
 gi|198261632|gb|EDY85920.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
           HTCC5015]
          Length = 239

 Score = 45.9 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 46/167 (27%), Gaps = 45/167 (26%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-DVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y + D  +       DD  
Sbjct: 1   MRQVVLDTETTGLDPKQGHRIIEIGCVELENRRLTGNKLHMYLQPDREI-------DDGA 53

Query: 42  VELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFNL 86
           +E+    ++          +     + +      +V HN+ F+          L      
Sbjct: 54  IEVHQITNEFLADKPRFGDVVDEFLDFV--KGSELVIHNAAFDVGFIDSELNLLDRNLGQ 111

Query: 87  DIPIHRWICTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIA 131
                  + TL +AR         L ++ +   +++        L+ 
Sbjct: 112 TKDYCGVLDTLAMARKMHPGKRNDLDSLCKRYDINNSHRTLHGALLD 158


>gi|302765286|ref|XP_002966064.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
 gi|300166878|gb|EFJ33484.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
          Length = 512

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 31/205 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D E              Y      V L           +   V    +  VL+   
Sbjct: 245 EIAVDLE-----------NHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVLRSVF 293

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +  V H S  +   L+  F + +       T   AR   +        E   L+  
Sbjct: 294 ANPSIRKVIHGSDRDILWLQRDFGIYV--CNLFDTGQAARVLRM--------ERFGLAF- 342

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L+  FC+    +     +      +     +Y + D      ++ +++ L   
Sbjct: 343 -------LLQTFCEVTPDKRYQLADWRLRPLS-AEMLKYAREDTHYLLYVYDKMKGLLRD 394

Query: 182 EQELWYLDQTINDRGYCVDVALAHT 206
            +    L   +  R   + + L   
Sbjct: 395 AETTEDLYLEVCQRSRDLCLQLYEK 419


>gi|262342145|gb|ACY54583.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 67/277 (24%), Gaps = 101/277 (36%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R     S G+ +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFQPSPGQLMVGADLAGIELRMLSHFL-------ARYDQGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +                                   
Sbjct: 63  ADKIGISRRLVKTVTYAFLYGAGDEKI--------------------------------- 89

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIAR 541
                     H+ + L   TA ++  K  RQ +    +  ++L  A ++  E G      
Sbjct: 90  ---------GHSYDKLLSSTAAKKKGKEIRQAYIEAIDGLDKLLDAIKKASERG------ 134

Query: 542 KRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENI 601
                             +    GR ++                          K     
Sbjct: 135 -----------------FIKALDGRKIIVDSPH---------------------KALNYC 156

Query: 602 VQAVSRDILAEGMMNATKAGYD-------IVLTVHDE 631
           +Q  S  +    M+   +            +  +HDE
Sbjct: 157 LQGNSAILAKRWMV-INQHNVKQLDLCCSQLAFIHDE 192


>gi|194759149|ref|XP_001961812.1| GF15154 [Drosophila ananassae]
 gi|190615509|gb|EDV31033.1| GF15154 [Drosophila ananassae]
          Length = 627

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 61/204 (29%), Gaps = 44/204 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM-PQVLK--- 58
           T+++D E           +     +  + L     D   V L DC+    + P+  +   
Sbjct: 433 TIYLDSE----------WLQNICGESQLCLLQIATD-QFVYLIDCLARESIQPEQWRLLG 481

Query: 59  -EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            +   N ++  V  +   + +VL+    L +            R +     L     +L 
Sbjct: 482 SKVFNNVNILKVGFSMACDLSVLQRSLPLQL------------RLHTPHHYLDL--RSLW 527

Query: 118 LSSQKMEEGKEL--------------IARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
           L  +K   G EL              ++  C G+        +   +R        Y   
Sbjct: 528 LQLKKQHTGVELPFGNINRAGGALSDLSFLCLGKKLNKSNQCSNWTNRPLRHEQIIYAAI 587

Query: 164 DVTVTREIFKRLEPLSSKEQELWY 187
           D      IFK L+       ++  
Sbjct: 588 DARCLFLIFKTLQARIPMLNKVIE 611


>gi|77362412|ref|YP_341986.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877323|emb|CAI89540.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 376

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 46/191 (24%), Gaps = 30/191 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E      + +  +        V L    +D   + L D + +  +     + L+
Sbjct: 24  VLAIDTE-----FMRRRTLY-----PEVALIQV-YDGEHLALIDPLAELSLFD-FWQILK 71

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  V H+   +  V +              T    +  G  + +             
Sbjct: 72  DPAVLKVFHSPSEDIEVFQKYAGFV--PTPLFDTQFALQILGEGNCM------------- 116

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
              G  L+ +       +    R     R       EY   D       F  +       
Sbjct: 117 ---GFALMVKTLLDIEIDKSESRTNWLQRPLTNKQLEYAAADAYHLLPCFNLIIDSVKAA 173

Query: 183 QELWYLDQTIN 193
                +     
Sbjct: 174 DLFNIVISESE 184


>gi|114563375|ref|YP_750888.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114334668|gb|ABI72050.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 242

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 56/195 (28%), Gaps = 51/195 (26%)

Query: 1   MATLF-------IDFETRSPIDLTKCGICKYAEDVCVILFAF------------------ 35
           M  +        +D ET     + + G   Y     +I                      
Sbjct: 1   MNIISSASRQVILDTETTG---MNQAGGPIYVGH-RIIEIGCVEVINRRLTGRTYHQYIN 56

Query: 36  ---GFDDHPVELWDCVHDP--------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
                D+  +++    +D          + +   + ++  ++  VAHN+ F+ + +   F
Sbjct: 57  PGQAIDEEAIQVHGITNDRVANEPRFHQIAKDFIDFIDGAEI--VAHNANFDVSFMDHEF 114

Query: 85  ----NLDIP---IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCK 135
                +      I   + +L +A+         L A+     + + +      L+     
Sbjct: 115 SKLNPIGPKTKDICSILDSLAIAKRLHPGQKNNLDALCRRYGIDNGRRTYHGALLDAEIL 174

Query: 136 GETHECLYDRNKPNH 150
            + +  +       +
Sbjct: 175 ADVYLIMTGGQIKFN 189


>gi|304383875|ref|ZP_07366332.1| exonuclease [Prevotella marshii DSM 16973]
 gi|304334953|gb|EFM01226.1| exonuclease [Prevotella marshii DSM 16973]
          Length = 163

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 36/148 (24%)

Query: 1   MATLF-IDFET-------RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-------W 45
           M     IDFET          + L        A+    +         P           
Sbjct: 1   MKDFAAIDFETANNERSSVCSVGLVIVRNGAVADTFYSL-----IQPEPNYYSYWCVRVH 55

Query: 46  DCVHDP--------VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
              H           + + ++  +E   + +VAHNS F+ + L+     + +D P + + 
Sbjct: 56  GLTHADTDAAPVFSEVWKQIEPLIE--GLPLVAHNSRFDESCLRAVFRVYQMDYPDYSFF 113

Query: 95  CTLVLARSNGLPSA---LKAVGEALKLS 119
            TL  AR      +   L  V       
Sbjct: 114 DTLTAARRTFPHLSNHQLHTVATECGYD 141


>gi|242240256|ref|YP_002988437.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech703]
 gi|242132313|gb|ACS86615.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech703]
          Length = 244

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 17/115 (14%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---A 82
           E   +   +         L D      +     E +      +V HN+ F+   +     
Sbjct: 61  EAFQIHGIS------DEFLIDRPAYADIVDEFIEFIR--GAELVIHNASFDIGFMDYEFR 112

Query: 83  CFNLDIPIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             N DIP          +L +AR         L  +    ++ + K      L+ 
Sbjct: 113 MLNRDIPKTETFCKITDSLAMARRLFPGKRNNLDVLCTRYQIDNSKRTLHGALLD 167


>gi|197284137|ref|YP_002150009.1| DNA polymerase III subunit epsilon [Proteus mirabilis HI4320]
 gi|194681624|emb|CAR40653.1| DNA polymerase III, epsilon subunit [Proteus mirabilis HI4320]
          Length = 252

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPI---------DLTKCGI-------------CKYA--------EDVCVI 31
             + +D ET             ++ + G                Y         E   V 
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPERLVDPEAFEVH 66

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDI 88
             +         L DC     +       +      ++ HN+ F+   +   F   N DI
Sbjct: 67  GIS------DEFLEDCPSFAEIADEFLAYIR--GAELIIHNASFDIGFMDYEFQKLNRDI 118

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P+         +L +AR         L A+ +   + + K      L+ 
Sbjct: 119 PLTETFCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLD 167


>gi|148379717|ref|YP_001254258.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 3502]
 gi|153933415|ref|YP_001384014.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 19397]
 gi|153934824|ref|YP_001387556.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. Hall]
 gi|148289201|emb|CAL83296.1| putative exonuclease [Clostridium botulinum A str. ATCC 3502]
 gi|152929459|gb|ABS34959.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. ATCC 19397]
 gi|152930738|gb|ABS36237.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A str. Hall]
 gi|322805994|emb|CBZ03561.1| DNA polymerase III epsilon subunit [Clostridium botulinum H04402
           065]
          Length = 195

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 25/122 (20%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVILFA----FGFD--DHPVELWDCVH 49
           M  +FID ET          LT C           + FA    F  D  +   E      
Sbjct: 1   MKKIFIDTETTGLEPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAIHGFS 60

Query: 50  DPVMP-----QVLKEALEN-----TDVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
              +      +  K+          D   +AHN  F+R           +++     + C
Sbjct: 61  VEKLKILSKGKKFKDLASEISSDLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPKEFFC 120

Query: 96  TL 97
           T+
Sbjct: 121 TM 122


>gi|331701662|ref|YP_004398621.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri
           NRRL B-30929]
 gi|329129005|gb|AEB73558.1| Exonuclease RNase T and DNA polymerase III [Lactobacillus buchneri
           NRRL B-30929]
          Length = 177

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 21/139 (15%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAEDVCVIL---FAFGFDDHPVELW---DC 47
           M  + +DFET          I L      +   +   ++     F + +  V      D 
Sbjct: 1   MNFVAMDFETANAKRASACSIALAIVRDNQITNEFYSLINPEMDFSWRNINVHGIHERDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKACF-NLDIPIHRW--ICTLVLARS 102
           V  P  P+V +    L + +  ++AHN+ F+ +VLK      ++    +  + TL  ++ 
Sbjct: 61  VDAPTFPEVWRHIQPLFSANKLVIAHNASFDNSVLKRTLERYEVQPPHYLTLDTLRTSKQ 120

Query: 103 NGLP---SALKAVGEALKL 118
                    L  + + L +
Sbjct: 121 FYPTLENHKLNTLCDKLNI 139


>gi|329894914|ref|ZP_08270713.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
 gi|328922643|gb|EGG29978.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
          Length = 247

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 37/165 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------AF-----GFDDHPVELW 45
           M  + +D ET     L      +  E  CV L            +       D   +E+ 
Sbjct: 1   MRQIVLDTETTG---LETSDGHRVIEIGCVELINRRLSGRHFHQYINPQREVDPGAMEVH 57

Query: 46  DCVHDPVMPQVLKEALENT------DVTIVAHNSYFERTVLKACFNLDIP---------- 89
              ++ +  + L  A+ +          ++ HN+ F+   L    +L+            
Sbjct: 58  GISNEFLQDKPLFSAIADEFLEFIKGAELIIHNAPFDIGFLDYELSLESERRAAPMPTVE 117

Query: 90  -IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            +   I TLV+AR         L A+     + +   +    L+ 
Sbjct: 118 SLCGVIDTLVMARRKHPGQRNTLDALCTRYDVDNSSRDLHGALLD 162


>gi|325091155|gb|EGC44465.1| DNA polymerase gamma [Ajellomyces capsulatus H88]
          Length = 1146

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 40/330 (12%), Positives = 82/330 (24%), Gaps = 75/330 (22%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ V A  G   V AD+   E
Sbjct: 670 PQIIPMGTITRRAVENTWLTASNAKAN------RVGSELKAMVRAPPGYVFVGADVDSEE 723

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   +S        T       R   KV      Y
Sbjct: 724 L-WIASLVGDAQFQIHGGNAIGFMTLEGTKSAGTDLHSKTASILGISRNDAKVFNYGRIY 782

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +++            +E +      + + +N       + F+  
Sbjct: 783 GAGLKFAATLLRQFNPSMSEQETKRVAAKLYKETKGTRTNRKILSDNPFWRGGTESFVFN 842

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +                  +       A  RR +        +      
Sbjct: 843 KLEEFAEQERPRTP----------------VLGAGITEALMRRFINKGSFMTSR------ 880

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 881 ------------------------------------INWAIQSSGVDYLHLLIISMDFLI 904

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                   + +TVHDEI     + D++ A+
Sbjct: 905 RRFNLDARLAITVHDEIRYLVKEHDKYRAA 934


>gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1]
 gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 200

 Score = 45.9 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 26/143 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAE---DVCV-----ILFAFGFDDHP-----VELWDCV 48
               +D ET          + + A    D  +       F+   +              +
Sbjct: 11  KFTVVDTETTGLSPYKGARLVEIAAVRLDEGLNIRLDRGFSTLINPKKPIPFQAYKIHKI 70

Query: 49  HDPVM-----PQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV 98
            D ++      + +         +   VAHN+ F+   +   +    ++ P+   I TL 
Sbjct: 71  SDEMVKDAPTIEEVLPHFSKYVENTVFVAHNAPFDFKFIDYFYKKTGMNCPLIAVIDTLK 130

Query: 99  LARSNGL---PSALKAVGEALKL 118
           L+R         +L ++ +   +
Sbjct: 131 LSRRIIPGLKSYSLDSLIQHFNI 153


>gi|332029311|gb|EGI69294.1| DNA polymerase subunit gamma-1, mitochondrial [Acromyrmex echinatior]
          Length = 1247

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 93/315 (29%), Gaps = 43/315 (13%)

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            +P+   S     + +   PT +T+    ++ I   +R  V A  G  +V AD+   E  +
Sbjct: 859  IPQVVVSGTLTRRAVE--PTWMTASNAHVERIGSELRCMVQAPPGYNIVGADVDSQELWI 916

Query: 389  LA-----WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQG 443
             +                         +      +V  A+     R   KV+  A  Y  
Sbjct: 917  ASIIGDAHYKRVHGATPFGWMTLIGTKSNGTDMHSV-TAKAIGISRDHAKVINYARIYGA 975

Query: 444  GAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
            G K  Q++      ++       K+    +  +  + F     E   +   +  +  +  
Sbjct: 976  GQKFAQRLLKQFNPSMTDAEATSKSRKMFDLTKGKKVFWLKP-EFVNDDLQDIAYTSSQA 1034

Query: 504  ERVKKAWRQKHSRV---SELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
             ++ K   +    +   SE       A    +E               +   +      L
Sbjct: 1035 YKIAKLHGKALQDIFLKSEWMGGSESAMFNRLEQ--------------IAGSEYPVTPFL 1080

Query: 561  MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA 617
                 R+L   +  ++  +L                    +VQ+ + D   ++   M   
Sbjct: 1081 DARLSRALEITNTDDDDKFL--------------PTKINWVVQSGAVDFLHLMLVSMRWL 1126

Query: 618  TKAGYDIVLTVHDEI 632
             +      L+ HDE+
Sbjct: 1127 MRDNARFCLSFHDEV 1141



 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 19/141 (13%)

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ---- 121
             IV HN  ++R+ +K  + L+    R++ T+ L       S L +   AL +S +    
Sbjct: 358 KIIVGHNVSYDRSRIKEQYWLNSTGTRFLDTMSLHVCV---SGLNSYQRALLVSKKADME 414

Query: 122 -----------KMEEGKELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                       + E  +L        E      +    + ++ + +   YC  DV  T 
Sbjct: 415 KEIWQSTTSLNSLIEVHKLYCGYEISKEGRNLFIEGTIKDIKDNFSMLMSYCASDVVATH 474

Query: 170 EIFKRLEPLSSKEQELWYLDQ 190
            I ++L PL  +         
Sbjct: 475 NILRKLFPLFQERFPHPVTLA 495


>gi|254720591|ref|ZP_05182402.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
 gi|265985632|ref|ZP_06098367.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306838555|ref|ZP_07471392.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
 gi|264664224|gb|EEZ34485.1| exonuclease RNase T and DNA polymerase III [Brucella sp. 83/13]
 gi|306406341|gb|EFM62583.1| DNA polymerase III subunit epsilon [Brucella sp. NF 2653]
          Length = 332

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL +    I+AHN+ F+R  L+  F++      W C
Sbjct: 134 TDEMVKGRTIPRDELDALIDGADIIIAHNAGFDRPFLER-FSIAFANKPWAC 184


>gi|227357997|ref|ZP_03842339.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
 gi|227161732|gb|EEI46764.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
          Length = 252

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPI---------DLTKCGI-------------CKYA--------EDVCVI 31
             + +D ET             ++ + G                Y         E   V 
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPERLVDPEAFEVH 66

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDI 88
             +         L DC     +       +      ++ HN+ F+   +   F   N DI
Sbjct: 67  GIS------DEFLEDCPSFAEIADEFLAYIR--GAELIIHNASFDIGFMDYEFQKLNRDI 118

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P+         +L +AR         L A+ +   + + K      L+ 
Sbjct: 119 PLTETFCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLD 167


>gi|209966072|ref|YP_002298987.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
 gi|209959538|gb|ACJ00175.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
          Length = 227

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 28/146 (19%)

Query: 1   MATLFIDFETRSPIDL------------------TKCGICKYAEDVCVILF-AFGFDDHP 41
           M  + +D ET     L                  T     +Y      +   AF      
Sbjct: 1   MREIVLDTETTGIDALNGDRVVEIGCVELMNHVATGRTYHQYINPERDMPIEAFNVHGLS 60

Query: 42  VELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICT 96
            E       P   +++   L+   D  +V HN+ F+   L           +P  R I T
Sbjct: 61  TEF--LSGQPTFAEIVGPFLDFIQDSPLVIHNATFDVGFLNAELTRLGMRTLPAARAIDT 118

Query: 97  LVLARSN--GLPSALKAVGEALKLSS 120
           +VLAR    G P++L A+    ++ +
Sbjct: 119 VVLARRRFPGAPASLDALCRRFEIDN 144


>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
 gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
          Length = 1431

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 88/332 (26%), Gaps = 55/332 (16%)

Query: 4   LFIDFETRSP----IDLTKCGICKYAEDVCVI-----------LFAFGFDDHPVELWDCV 48
           +  D ET        ++T+ G  +  E   ++             +    +      + V
Sbjct: 418 VVFDIETTGLSHLKNNITEIGAVR-VESGKIVDVFNGLVNPEQEISQEITEITGITNEMV 476

Query: 49  HDPVMPQVLKE-ALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
            D  +   +    LE + +   VAHN+ F+ + +K      NL+     +I T+  AR+ 
Sbjct: 477 ADKPLISEIMPKFLEFSKNAVFVAHNAEFDISFIKTNCKRLNLEFNPT-FIDTMGFARAI 535

Query: 104 GLP---SALKAVGEALKLSSQKMEEGK-----------ELIARFCKGETHECLYDRNKPN 149
                   L  + + L ++                   ELI    K          N   
Sbjct: 536 LPHLKNHKLNTLCKELGVNLLNHHRASFDAEACAGILLELIKIVEKEGKVFDENINNIET 595

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW-YLDQTINDRGYCVDVALAHTLN 208
                     Y          I+ +     S   ++          R      +      
Sbjct: 596 KW-PVAKNISYNSI-------IYVKKMEALSGFYKMVSEGLMKYFRRVAGFPKSRLKEYR 647

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET--TCQRVLSSN 266
           + + +     D EL      +   S          +    +      +      +VLS  
Sbjct: 648 EGLLIGSGNWDGELFR--AFIEEKSEEEILEIAKFYDFFEIQPISNLKHLFFRGKVLS-I 704

Query: 267 KKLTPQAIQVFNNRMRASRS-----AVLKLNT 293
             L     +++    +  +       V  L+ 
Sbjct: 705 DDLKEINKKIYELGKKLDKLVVATGNVKYLDK 736


>gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
 gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
          Length = 1442

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 44/143 (30%), Gaps = 35/143 (24%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAF------------------------GFDDHPVEL 44
           ET    DL   G+   + +  +I                               +     
Sbjct: 413 ETYVVYDLETMGLN--SHENEIIEIGAIKLKGTRIVDKYSQLINPGKSIPSKIQELTGIT 470

Query: 45  WDCVHDPVMPQVLKE-ALE-NTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLV 98
            D V D    + +    LE   D T+VAHN+ F+   L    K   N+       I TL 
Sbjct: 471 DDMVKDEPSIEEVLPGFLEFAGDATLVAHNARFDIGFLTRDVKKYTNIKDYKPSVIDTLQ 530

Query: 99  LARSNGL---PSALKAVGEALKL 118
            AR          LK+V + L +
Sbjct: 531 WARDLLPDLRGYGLKSVTKKLGV 553


>gi|258404214|ref|YP_003196956.1| DEAD/DEAH box helicase domain-containing protein [Desulfohalobium
           retbaense DSM 5692]
 gi|257796441|gb|ACV67378.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 962

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 48/174 (27%), Gaps = 23/174 (13%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            D ET       + G    A+D   +  +              ++      L E L    
Sbjct: 791 FDLET--QRSAQEVGGWNRAKD---MGISCAVVYDSALDTYVEYEEKDIPQLVEHLH-KC 844

Query: 66  VTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
             ++  N   F+  VL      D                    +L  +    K    ++ 
Sbjct: 845 DLVIGFNILRFDYQVLSGYSRADFQALP---------------SLDLLRVVHKQLGYRLS 889

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             K L     + +         +       R   +YC+ DV VTR++++     
Sbjct: 890 LDK-LAQATLQAQKTANGLQALQWWKEGRIRDIIDYCRQDVAVTRDLYRFGRDN 942


>gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
 gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
          Length = 967

 Score = 45.9 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 38/153 (24%), Gaps = 43/153 (28%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------ 43
             L +DFET         G      D  + + A   DD  +                   
Sbjct: 3   RLLVVDFETT--------GSHPRQGDSIIQIGAVAIDDGQITESFSTLIHPGQDIPPFIT 54

Query: 44  ---------LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIH 91
                    + D      +       L       VAHN+ F+   L+             
Sbjct: 55  QLTGITNEMVADAPSLEEVFPDFLRLL--DGRAFVAHNASFDLQFLQEALLSQGYYAFDG 112

Query: 92  RWICTLVLARSNGL---PSALKAVGEALKLSSQ 121
             + T+ L+R          L  +   L++   
Sbjct: 113 YVLDTVELSRVLLPMQNSYRLGELASELEIEHD 145


>gi|262342151|gb|ACY54586.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTNAFLYGAGDEKI---GHSYDKPLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEVIKKASERGFIKALDGRKII 145


>gi|194446652|ref|YP_002039328.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194405315|gb|ACF65537.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 783

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|158421629|ref|YP_001522921.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
 gi|158328518|dbj|BAF86003.1| DNA polymerase III [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 40/145 (27%), Gaps = 28/145 (19%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAEDVCVILF-AFGFDDHP 41
           M  + +D ET                       LT      Y      +   AF      
Sbjct: 1   MREIVLDTETTGLEANKGDRVVEIGCVEMVNRILTGNTFHVYINPERDMPAEAFAVHGLS 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICT 96
            E   D      +     E +     T+V HN+ F+       L       I   R + T
Sbjct: 61  SEFLSDKPKFAEVADAFLEFIA--GDTLVIHNAAFDIGFLNAELARLSREPIARDRVVDT 118

Query: 97  LVLARSNGLPSA--LKAVGEALKLS 119
           + LAR     ++  L  + +   + 
Sbjct: 119 VALARRKHPGASAKLDDLMKRYGID 143


>gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
 gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
          Length = 956

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 66/291 (22%), Gaps = 85/291 (29%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCV------ILFAFGFDDHPVELWDC--------- 47
            + ID ET       + G+ +  E   V      +L  F     PV              
Sbjct: 5   YIAIDVETTGL----EAGVDEIIEIAAVKFNADEVLETFSTLVQPVHSLPLNSSRLTGIT 60

Query: 48  -------VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
                       +       L   +  +V HN  F+  +L     + +P      T  LA
Sbjct: 61  ADMLASAPRFAEVAPRFAAFL--KNYPLVGHNVEFDLRML-RAQGMRLP-QPAFDTFELA 116

Query: 101 RSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                      L A+   L +   +                                   
Sbjct: 117 TLLMPRTPAYRLSALAATLGIHHDEAHR-------------------------------- 144

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
                 D  VTR+IF        +  E   LD          D+     L   ++     
Sbjct: 145 ---ALSDADVTRQIFL----YLLRRIEALPLD----------DLNEIMRLTSQIEWGLRS 187

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKK 268
           L +E +      V       +   +   +  +      + T          
Sbjct: 188 LFEEAQRAKARRVFVDAIPIQADRYDDRDEKIVPL---KPTGDERPIDLAD 235


>gi|242242736|ref|ZP_04797181.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis W23144]
 gi|242233872|gb|EES36184.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis W23144]
          Length = 902

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 90/295 (30%), Gaps = 41/295 (13%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL---ARSNGL 105
            +   + + +++     VAHN  F+   +K  F   N+     R + TL L   A     
Sbjct: 73  EVADDIYQLIKD--CVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLELFKIAFPTDK 130

Query: 106 PSALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
              L A+ E+  +                K +I  F K E       +      +  + +
Sbjct: 131 SYQLSALAESHHIPLNNAHRADEDATTTAKLMIKAFEKFEQLHLDTQKQLYYLSKNLK-Y 189

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVA-LAHTLNQIVDVER 215
             Y      V    ++   P +  EQ    + +   D     V+       L + V    
Sbjct: 190 DLYHILFEMV--RNYQTKPPNNQFEQFEQIIYRKQIDLKKPAVNFDGTLKDLYKNVTQSL 247

Query: 216 ------------TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
                         +  +L      ++ +     K   +L   T  ++E       +T  
Sbjct: 248 NLTYRPQQLYLAEIILDQLMHSDKAMIEAPLGSGKSLAYLLAATMYNIETGRHVMISTNT 307

Query: 261 RVLSS--NKKLTPQAIQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
           ++L S   +K  P    V + ++     +S    ++  L+  +  D      +  
Sbjct: 308 KLLQSQLLEKDIPLLNDVLDFKINASLIKSKNDYISLGLISQILKDDTSNYEVNI 362


>gi|256851438|ref|ZP_05556827.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN]
 gi|260660859|ref|ZP_05861774.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN]
 gi|282933112|ref|ZP_06338499.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|297206253|ref|ZP_06923648.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           jensenii JV-V16]
 gi|256616500|gb|EEU21688.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 27-2-CHN]
 gi|260548581|gb|EEX24556.1| DNA polymerase subunit III alpha [Lactobacillus jensenii 115-3-CHN]
 gi|281302616|gb|EFA94831.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|297149379|gb|EFH29677.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           jensenii JV-V16]
          Length = 177

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAEDVCVIL-FAFGFDDHPVELW-----DC 47
           M  + +DFET          + L      K  +    ++     FD   +++      D 
Sbjct: 1   MNFIAMDFETANRHPESACSLALVMVRNNKIIDRFYTVINPQMPFDGRNIQVHQITPDDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
              P M +V    +AL    + + AHN+ F+  VLK   A +++D P +  I TL  +R 
Sbjct: 61  KDAPTMAEVWPKIKALYQPGMLVAAHNARFDANVLKMSLARYDIDEPHYLVIDTLKTSRL 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V EAL + 
Sbjct: 121 FEPDLPNHKLNTVAEALDVE 140


>gi|168262225|ref|ZP_02684198.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205348911|gb|EDZ35542.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 783

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDHQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|16763487|ref|NP_459102.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167989962|ref|ZP_02571062.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168243495|ref|ZP_02668427.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449638|ref|YP_002044066.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197264857|ref|ZP_03164931.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|16418595|gb|AAL19061.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194407942|gb|ACF68161.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197243112|gb|EDY25732.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205331321|gb|EDZ18085.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205337436|gb|EDZ24200.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|261245330|emb|CBG23118.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267991769|gb|ACY86654.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301156726|emb|CBW16200.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911067|dbj|BAJ35041.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321222332|gb|EFX47404.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323128415|gb|ADX15845.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332987049|gb|AEF06032.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 783

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDHQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|28199772|ref|NP_780086.1| ribonuclease D [Xylella fastidiosa Temecula1]
 gi|182682522|ref|YP_001830682.1| ribonuclease D [Xylella fastidiosa M23]
 gi|28057893|gb|AAO29735.1| ribonuclease D [Xylella fastidiosa Temecula1]
 gi|182632632|gb|ACB93408.1| ribonuclease D [Xylella fastidiosa M23]
          Length = 362

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 46/175 (26%), Gaps = 26/175 (14%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D  + +   V    M   L   L   +V  + H++  +    K      
Sbjct: 36  PELALVQIAIGDEILLVDPLVPG--MTDALGLWLAAPNVIKIMHSASEDLIAFKYACG-- 91

Query: 88  IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +       T + A   GL   +   K V +   +   K E   + + R            
Sbjct: 92  VLPRPLFDTQIGAALTGLGGGMGYQKLVAKVTNVELGKGETRSDWMHRPLTPAQ------ 145

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                         +Y   DV     +   L    ++     +L++        +
Sbjct: 146 -------------LDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCTRLTDNI 187


>gi|300715286|ref|YP_003740089.1| DNA polymerase II [Erwinia billingiae Eb661]
 gi|299061122|emb|CAX58229.1| DNA polymerase II [Erwinia billingiae Eb661]
          Length = 786

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 67/240 (27%), Gaps = 65/240 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGI-CKYAEDVCVILFAFGFDDHPVELWD-----CVHDPVMPQ 55
             + +D ET    +L   G+      DV ++      ++      D         P + +
Sbjct: 153 KWVSLDIETTRHGELYCIGLEGCGQRDVYMLG----PENGDASKLDFNLEYVSSRPQLLE 208

Query: 56  VLKEAL--ENTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR----------------- 92
            L       + DV  +  N   F+  VL+     + + + + R                 
Sbjct: 209 KLNAWFVQHDPDVL-IGWNVVQFDLRVLQKHADRYGIPLKLGRNNEALEWREHGFKPGVF 267

Query: 93  --------WIC--TLVLARSNGL-PSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
                    +     + +        +L+AV   L      + EGK +   + + +  + 
Sbjct: 268 FAQATGRLIVDGIDALKSAFWNFASFSLEAVSREL------LGEGKAINNPWDRMQEIDQ 321

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
            +        E       Y   D  +   IF   + +         L +     G  VD 
Sbjct: 322 RF-------AEDKPALAHYNLKDCELVTRIFHHTQLMPF-------LLERSTVNGLAVDR 367


>gi|239917797|ref|YP_002957355.1| ribonuclease D [Micrococcus luteus NCTC 2665]
 gi|239839004|gb|ACS30801.1| ribonuclease D [Micrococcus luteus NCTC 2665]
          Length = 416

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 48/166 (28%), Gaps = 27/166 (16%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIP 89
           +L     +   + L D    P     L    E  T V  + H +  +   L       + 
Sbjct: 65  MLVQLKREGAGIWLVD----PEALDGLAPLQEALTGVEWILHAASQDLPCLAEQ---GLR 117

Query: 90  IHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
             R   T + AR  GLP   L AV E L            L     K  +      R  P
Sbjct: 118 PDRLFDTELAARVAGLPRVGLVAVLEEL------------LGVTLAKEHSAADWSVRPLP 165

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                      Y   DV +   + + L      + +L + +Q    
Sbjct: 166 ------EAMLTYAALDVELLVPLREALIARLEADGKLAWAEQEFEH 205


>gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 1572

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 56/229 (24%), Gaps = 66/229 (28%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL---WD------------- 46
            +  D ET    ++    I        +        +   E     D             
Sbjct: 481 YVVFDLETTGLSNVRDKII-------EIAGIKIKNGNKIGEFQKFIDPQQKLTKTITNIT 533

Query: 47  -----CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
                 +        +         D  +VAHN+ F+   LK       + +     I T
Sbjct: 534 NITDEMLQGQQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEPKPIIDT 593

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
           + L++                           L+  F           + + +HR     
Sbjct: 594 MALSQ----------------------RYFSNLLKYFSLKRLATVFKVKLEDHHR----- 626

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG--YCVDVAL 203
                  D T T EIF ++    +   +    +Q IN       +D   
Sbjct: 627 ----ALADATATSEIFIKMIDQLADPTKDPKNEQVINFFELQEKIDHKY 671


>gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola
           ATCC 35405]
 gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405]
 gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola
           F0402]
          Length = 217

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 53/193 (27%), Gaps = 30/193 (15%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------------DHPVELW--DCVHD 50
             D ET       +  +        +      ++               V     + +  
Sbjct: 18  AFDTETTGTEAKAERVVEIGCVKFDIRGVIARYNVLIDPEKPMPPEAGKVNQITDEMLAG 77

Query: 51  PVMPQVLKEALEN--TDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLARSNG 104
                 +     +   +  +VAHN+ F+       L+ C    +  ++   TL  AR   
Sbjct: 78  QPKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCGKTKL-TNKVFDTLTFARETL 136

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                 AL+ +     + +      ++      +             +  E  +   +Y 
Sbjct: 137 PGLQSYALQNLATQFGVQAVNAHRAEDDARVCMEFFKIA------VSHFFEKNKDMLDYY 190

Query: 162 KGDVTVTREIFKR 174
           K DV ++  +  +
Sbjct: 191 KKDVDISEYLSTK 203


>gi|81428950|ref|YP_395950.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610592|emb|CAI55643.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 178

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 21/142 (14%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAEDVCVIL-----FAFGFDDHPVELWDCV 48
           M  + +DFET          I L      +  +    ++     F+           D V
Sbjct: 1   MNFVAMDFETANGQRDSACSIALVVVRNDQIVDQFYTLIKPETYFSSRNSQIHGIYEDDV 60

Query: 49  HDPVMPQVLKEALE---NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
                   +   +         +VAHN+ F+  VL+     +++  P +  + TL  +R 
Sbjct: 61  AQAPKFDQVWPHIAPFFTPQKLVVAHNATFDIGVLRSTLQHYDIPEPHYLALDTLTTSRR 120

Query: 103 NGL---PSALKAVGEALKLSSQ 121
                    L  +   L++  +
Sbjct: 121 LYPQFKNHKLNTLCTNLEIPLE 142


>gi|332686699|ref|YP_004456473.1| DNA polymerase III subunit alpha [Melissococcus plutonius ATCC
           35311]
 gi|332370708|dbj|BAK21664.1| DNA polymerase III alpha subunit [Melissococcus plutonius ATCC
           35311]
          Length = 1450

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 11/116 (9%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D   + V+  + K+   + +  +VAHN+ F+   L      + +    +  I TL LAR 
Sbjct: 486 DAKSEKVVLNMFKKF--SENTILVAHNAAFDMGFLNTSYRKYKIPEAENPVIDTLELARY 543

Query: 103 NGL---PSALKAVGEALKLS---SQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                    L  + +   +      +     E     C     E     +   H E
Sbjct: 544 LYPTLKSHRLNVLAKKFGVGLEQHHRAIYDSEATGHLCWIFLKETKEKFSMNYHDE 599


>gi|320528160|ref|ZP_08029325.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
           moorei F0204]
 gi|320131508|gb|EFW24073.1| DNA polymerase III subunit epsilon domain protein [Solobacterium
           moorei F0204]
          Length = 186

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 41/152 (26%), Gaps = 41/152 (26%)

Query: 2   ATLFIDFET-------------------------RSPIDLTKCGICKYAEDVCVILFAFG 36
             + IDFET                          S I   +        ++ +      
Sbjct: 3   KIVAIDFETANNQMASVCSVGVAVMEDGVIIDHYYSLIKPEENVGYFSPYNIRIHGITAR 62

Query: 37  -FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHR 92
                P           +   L    E+  +  VAHN+ F+ + LK         IP+  
Sbjct: 63  DVKGAPTF-------SEIYSELTGYFEDAVI--VAHNARFDMSCLKQTCLNTGKKIPVLE 113

Query: 93  WICTL-VLARSNG--LPSALKAVGEALKLSSQ 121
           +  T+ +  R         L  V E + +   
Sbjct: 114 YFDTVELCKRVFSNLEHHRLNDVCEYIGIELD 145


>gi|262342143|gb|ACY54582.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
             +R+  + S G+ +V ADL+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRLRALFLPSPGQAMVAADLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLAAIKTASERGFIKAIDGRK 143


>gi|255689883|ref|ZP_05413558.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624488|gb|EEX47359.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 183

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 25/142 (17%)

Query: 1   MATLFIDFETRSP--IDLTKCGICKYAEDVCVI----------LFAFGFDDHPVELW--- 45
           +  + IDFET +     + + GI     D  ++            ++ + +  +      
Sbjct: 4   INFIAIDFETATGKRASICEAGI-CVVRDGKIVETRSWLVRPQGNSYSYWNMQIHGIRPN 62

Query: 46  DCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVL 99
           D    P  P+    + + L++  V  VAHN+ F+   ++     + ++     + C+L  
Sbjct: 63  DTADSPEFPEVWTEISKYLKDIPVL-VAHNAAFDIGCIRHSLELYGMEKLEITYYCSLRA 121

Query: 100 ARSNGLPS--ALKAVGEALKLS 119
           AR        +L  + +  ++ 
Sbjct: 122 ARKLYSFGCNSLDYLCDQFRIP 143


>gi|124359359|gb|ABD28520.2| HRDC; Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 341

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 37/150 (24%), Gaps = 21/150 (14%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L           +        + + L++   +     V H +  +   L+  F + I   
Sbjct: 32  LMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIYI--C 89

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T   +R   +        E   L          L+  FC          +N     
Sbjct: 90  NMFDTGQASRVLKM--------ERYSLQH--------LLQHFC--GVTANKEYQNADWRA 131

Query: 152 EAW-RLFGEYCKGDVTVTREIFKRLEPLSS 180
                +  +Y + D      I+  +     
Sbjct: 132 RPLPDVMIKYGREDTHYLLYIYDLMRIKLF 161


>gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53]
 gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53]
          Length = 1451

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 46/194 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL--WDCVHD--------- 50
             +  D ET S            A    +I FA    ++   +   D             
Sbjct: 410 RYVVFDIETTSLS----------AYHGEIIEFAATIIENKAVVDKVDIFIKSKEKLSHFT 459

Query: 51  -------PVMPQ----VLKEALE------NTDVTIVAHNSYFERTVLKACF---NLDIPI 90
                    M       LKEAL+      N +V  VAHN+ F+   L   F   N+  P 
Sbjct: 460 TRLTSITNEMLDQKGIELKEALQKIYDVLNNNVA-VAHNANFDYNFLIEKFDQNNMQAPK 518

Query: 91  HRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
             +I +LV++R          L      L ++    +  + L       +       + K
Sbjct: 519 CTFIDSLVVSRILFEHRDKHNLNEFCRNLSVNYDTEKAHRALYDTEVLADAWIEATLKLK 578

Query: 148 PNHRE-AWRLFGEY 160
              +   ++   EY
Sbjct: 579 DIKQISNFQELSEY 592


>gi|218529738|ref|YP_002420554.1| DNA polymerase III subunit epsilon [Methylobacterium
           chloromethanicum CM4]
 gi|218522041|gb|ACK82626.1| DNA polymerase III, epsilon subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 236

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 27/145 (18%)

Query: 2   ATLFIDFETRS--------PIDLTKCGICKYAEDVCV--ILF----AFGFDDHPVELWD- 46
             + +D ET           I++    +  + +       L     A       V     
Sbjct: 3   REIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQRAVSEGAFAVHGISD 62

Query: 47  --CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICT 96
                 PV  +V+   LE  +D  +V HN+ F+   L              I +   + T
Sbjct: 63  AMLADKPVFAEVVDAFLEFCSDARLVIHNAPFDVGFLNMEFARLGPAAPKAIALEDVVDT 122

Query: 97  LVLARSNGLPS--ALKAVGEALKLS 119
           L+LAR     +   L A+     + 
Sbjct: 123 LLLARRKHPGAANNLDALCNRYGVD 147


>gi|154491985|ref|ZP_02031611.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC
           43184]
 gi|154088226|gb|EDN87271.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC
           43184]
          Length = 1266

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/93 (10%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
             ++  V++      + + +   +    ++L+R     +  ++      +  + +E+   
Sbjct: 767 IKYDIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLIEKMNH 823

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           L ++F  G       +         W  F  Y 
Sbjct: 824 LKSKFMAGGKTNGYKEETLQKIWSDWEKFASYA 856


>gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae
           86-028NP]
 gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP]
          Length = 255

 Score = 45.9 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 50/187 (26%), Gaps = 33/187 (17%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALENTDVTI-VA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +      VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLAR--SNGLPSALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKP 148
             TL +AR    G  + L A+ E L + + K      L+                     
Sbjct: 126 TDTLQMARQMYLGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185

Query: 149 NHREAWR 155
                  
Sbjct: 186 EESVESE 192


>gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
 gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
 gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1]
 gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
 gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1]
 gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1]
 gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
 gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
 gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
 gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1]
 gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
 gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
          Length = 432

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 35/185 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--------------------- 40
             L +D ET       + G  +  E   V L    F  +                     
Sbjct: 212 RQLIMDTETTGFN---EAGGDRIVEVGIVELVGRKFTGNILHVYINPEKHMDDAVIQVHG 268

Query: 41  --PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD-----IPIHRW 93
                + D      + Q + E +  ++V  +AHN+ F+   L   FN           + 
Sbjct: 269 ISNAFVADKPKFAEVAQQIYEFMAGSEV--IAHNAAFDMKFLNMEFNRAGLSNFANSVKV 326

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
             TL LA+        +L A+ + L +  +       L+      E +  +         
Sbjct: 327 TDTLALAKQMYPGQKNSLDALVKRLGVGQKDRTFHGALLDSEILAEVYLAMTGGQIAMAI 386

Query: 152 EAWRL 156
           +    
Sbjct: 387 DDDNT 391


>gi|218264823|ref|ZP_03478511.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221765|gb|EEC94415.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1266

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/93 (10%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
             ++  V++      + + +   +    ++L+R     +  ++      +  + +E+   
Sbjct: 767 IKYDIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLIEKMNH 823

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           L ++F  G       +         W  F  Y 
Sbjct: 824 LKSKFMAGGKTNGYKEETLQKIWSDWEKFASYA 856


>gi|204926848|ref|ZP_03218050.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204323513|gb|EDZ08708.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 783

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 65/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R+    + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RHFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|330752289|emb|CBL87244.1| conserved hypothetical protein [uncultured Sphingobacteria
           bacterium]
          Length = 244

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 55/202 (27%), Gaps = 56/202 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF---GFDDHP----VELWDCVHDPVMP 54
             L ++ E    I +       YAE   +I  +     +D+      V+ +   ++  + 
Sbjct: 43  KDLALNIE--ECIQVYNEKAAIYAEFNKIICISVGYLAYDEDEIVLKVKSYFGDNEKDIL 100

Query: 55  QVLKEALEN-----TDVTIVAHNSY-FERTVLKACFNLD---------------IPIHRW 93
           +     L           +  HN   F+  V+     +                  +   
Sbjct: 101 KEFSSLLNVHYNNLKKYYLCGHNIKEFDCPVICRRMLIHDLELPKLLNLSRKKSWQVRHL 160

Query: 94  ICTLVL-------ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
           I TL +       +       +L  +   L +SS K      L+++              
Sbjct: 161 IDTLEMWKFGDYKSYI-----SLDLLSAVLNISSPKTNLVGSLVSK-------------- 201

Query: 147 KPNHREAWRLFGEYCKGDVTVT 168
                        YC+ DV  T
Sbjct: 202 VYWEENDIERIKLYCEQDVVTT 223


>gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
 gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
          Length = 1443

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 42/146 (28%), Gaps = 37/146 (25%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHD-------------- 50
           D  T    D+   G+   A D  + L A    D  V        +               
Sbjct: 425 DT-TYVVFDVETTGLST-AYDTIIELAAVKIKDGQVIDKYESFANPHHPLSATTIELTGI 482

Query: 51  -----------PVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICT 96
                        + +     + +    +VAHN+ F+   L      F L+  +H  I T
Sbjct: 483 TDDMVRNAPEVEQVIKEFHAFIGDA--IVVAHNASFDIGFLYTGYKKFGLEDTVHPVIDT 540

Query: 97  LVLARSNGLP---SALKAVGEALKLS 119
           L LAR          L  + +   + 
Sbjct: 541 LELARLLYPTMKNHRLNTLCKKFNIE 566


>gi|283954697|ref|ZP_06372215.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793889|gb|EFC32640.1| polysaccharide biosynthesis protein [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 264

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 40/177 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D   +  M       +EN +  +V+ N   F+  VL       +I    ++ T      
Sbjct: 79  IDGQDEKEMIFNFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNIKAATYLDTQSDKWN 138

Query: 97  -------------LVLAR-SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                        L+ +  +NG    L  +   + L  +    G E++            
Sbjct: 139 NYKTRFSELKHCDLLESLGANGRGVKLDMICSMVGLPGKYDVHGDEVMKL---------- 188

Query: 143 YDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE--PLSSKEQELWYLDQTINDRGY 197
                  ++  +    EYC+ DV  T  +F + E    +  E++  +    + D   
Sbjct: 189 ------FYQNEFEKIHEYCESDVLNTYMLFLKYELIKGNVSEEDYIHFLSYMRDFLC 239


>gi|281413711|ref|ZP_06245453.1| ribonuclease D [Micrococcus luteus NCTC 2665]
          Length = 415

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 48/166 (28%), Gaps = 27/166 (16%)

Query: 31  ILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIP 89
           +L     +   + L D    P     L    E  T V  + H +  +   L       + 
Sbjct: 65  MLVQLKREGAGIWLVD----PEALDGLAPLQEALTGVEWILHAASQDLPCLAEQ---GLR 117

Query: 90  IHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
             R   T + AR  GLP   L AV E L            L     K  +      R  P
Sbjct: 118 PDRLFDTELAARVAGLPRVGLVAVLEEL------------LGVTLAKEHSAADWSVRPLP 165

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
                      Y   DV +   + + L      + +L + +Q    
Sbjct: 166 ------EAMLTYAALDVELLVPLREALIARLEADGKLAWAEQEFEH 205


>gi|238790133|ref|ZP_04633910.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
           33641]
 gi|238721802|gb|EEQ13465.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
           33641]
          Length = 259

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 47/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 12  RQIVLDTETTG---MNKLGVHY--EGHKIIEIG-AVEVINRRLTGRNFHVYVKPDRLVDP 65

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDI 88
                  + D  +    K    +             +V HN+ F+   +         DI
Sbjct: 66  EAYGVHGISDEFLAD--KPTFADITPEFLEFIRGAELVIHNAAFDIGFMDYEFRMLQQDI 123

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P     CT    L+LAR         L A+ +  ++ + K      L+ 
Sbjct: 124 PKTETFCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLD 172


>gi|262212393|gb|ACY35813.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 187

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 64/269 (23%), Gaps = 96/269 (35%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R   +A+ G+ +V ADL+GIE R+L+                       A    +     
Sbjct: 13  RRLFMATPGQVMVGADLSGIELRMLSHYLARYDTYFGDNLLNGDIHQLNADKIGI----- 67

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R + K +  A     G +       +    L+                        
Sbjct: 68  ---TRKLVKTVTYAFLCGAGNEKI---GYSYDRLLSPQKAKA------------------ 103

Query: 485 MQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRR 544
                                +K+A+ +    +S+L + +  A                 
Sbjct: 104 -----------------KGREIKEAFIEAIPGLSDLLSAVKSAA---------------- 130

Query: 545 DVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA 604
                      N   +    GR ++                          K    ++Q 
Sbjct: 131 -----------NRGFVKGIDGRKILVDSPH---------------------KALNYLLQG 158

Query: 605 VSRDILAEGMMNATKAG--YDIVLTVHDE 631
            +  +    M+ A         +  +HDE
Sbjct: 159 SAGVVAKRWMVIANDNPFCCSQLAFIHDE 187


>gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
 gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
 gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
          Length = 318

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 69/258 (26%), Gaps = 39/258 (15%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIA-----RFCKGETHECLYDRNKPNHRE 152
                +     L+ +   L +         + I      + C     E     NK     
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEEGKRKVNKAM--- 186

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                  Y    V       KR            YLD         + V         + 
Sbjct: 187 -LDETAVYEA--VKEILACNKRNVEWLRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LT 241

Query: 213 VERTKLDQELESLTYGLV 230
               +  +E+ +      
Sbjct: 242 EILEEDVKEICTSLKCEP 259


>gi|46123343|ref|XP_386225.1| hypothetical protein FG06049.1 [Gibberella zeae PH-1]
          Length = 807

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 43/178 (24%), Gaps = 29/178 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E              Y     V L      +    +          +VL +  
Sbjct: 242 KEIAVDLE--------HHDFRSYVGL--VSLMQISTREKDWIVDTLQPWRHKLEVLNQVF 291

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N  +  V H +Y +   L+      + ++    T         P       ++L     
Sbjct: 292 TNPKIVKVFHGAYMDIIWLQRDLG--LYVNGLFDTFFACGQLNYP------AKSLAYLLS 343

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
           K  +         K         R  P      +    Y + D      I+ R+    
Sbjct: 344 KFVDFDA-----DKKYQLADWRLRPLP------QEMLYYARSDTHYLLYIYDRVRNEL 390


>gi|313205201|ref|YP_004043858.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4]
 gi|312444517|gb|ADQ80873.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4]
          Length = 231

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 55/223 (24%), Gaps = 43/223 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID ET         G         V L      DH       ++    P  L E L
Sbjct: 43  KVVGIDTET---KPSFTRGTYH-----KVSLVQISTLDH--CFLFRLNKIDFPAALAEFL 92

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC--TLVLARSNGLPSALKAVGEALKLS 119
            + ++  +  +   +   L             +   T+V +               L+L 
Sbjct: 93  SDENIKKIGLSLRDDLNGLNKHHAF--KPANCVDIQTIVQSYGI------------LELG 138

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            QK       I     G+            + E       Y   D   + +I+ +L    
Sbjct: 139 LQK-------IYAILFGKKISKSQRLTNWENPELTEQQQRYAATDAWASLQIYLQLMSEK 191

Query: 180 SKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
              ++              +    A    ++ + +    +   
Sbjct: 192 KLTKKQI----------DKILQQHALEQRELREQQMASREAAA 224


>gi|257090922|ref|ZP_05585283.1| exonuclease [Enterococcus faecalis CH188]
 gi|312902561|ref|ZP_07761767.1| exonuclease [Enterococcus faecalis TX0635]
 gi|256999734|gb|EEU86254.1| exonuclease [Enterococcus faecalis CH188]
 gi|310634231|gb|EFQ17514.1| exonuclease [Enterococcus faecalis TX0635]
 gi|315168719|gb|EFU12736.1| exonuclease [Enterococcus faecalis TX1341]
 gi|315579629|gb|EFU91820.1| exonuclease [Enterococcus faecalis TX0630]
          Length = 188

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 31/144 (21%)

Query: 1   MATLFIDFETRS-------PIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-------- 45
           M     DFET S        I + K    +  ++   +             W        
Sbjct: 12  MNFYAFDFETASYDKHSACSIAIVKVENSQIVDEFYTL-----IKPETPFFWRNTQIHGI 66

Query: 46  ---DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
              D V+ P  P+V ++       +  +VAHN+ F+ +VL      + L+ P +  +CT+
Sbjct: 67  HESDVVNAPKFPEVWQQIQHCFQPNRLVVAHNASFDCSVLAGCLDYYGLEQPNYLSLCTV 126

Query: 98  VLARSN---GLPSALKAVGEALKL 118
             +R          L  V E L +
Sbjct: 127 KTSRKLFPEFPNHKLNTVCENLNI 150


>gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
 gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
          Length = 318

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 69/254 (27%), Gaps = 31/254 (12%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L      IVAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 72  VSDAPTIEEVLPLFLAFLH--ANVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPNHREAWRL 156
                      L+ +   L +         + I      +       +  +  ++ +   
Sbjct: 130 KKYMKQAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEEGQRKVNKVSLDE 189

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y    V       KR            YLD         V V         +     
Sbjct: 190 IVVYEA--VKEMLARNKRNVEWLRCMNVGSYLDIKAFYPVMRVKVKGRKKYV--LTEILE 245

Query: 217 KLDQELESLTYGLV 230
           +  +E+ +      
Sbjct: 246 EDVKEICTSLKCEP 259


>gi|15889361|ref|NP_355042.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens
          str. C58]
 gi|15157207|gb|AAK87827.1| DNA polymerase III, epsilon subunit [Agrobacterium tumefaciens
          str. C58]
          Length = 202

 Score = 45.9 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 19/98 (19%)

Query: 1  MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI---------------LFAFGFDDHPVEL 44
          M T+ IDFET +    + C +   + ED  ++                F           
Sbjct: 1  MKTIAIDFETANEERGSACSVGLAWIEDGQIVRVEERLIRPRDMRFSPFNIAVHGIRPR- 59

Query: 45 WDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK 81
           D    P  P+V++E +++    T++AHN+ F+ +V++
Sbjct: 60 -DVEDAPEFPEVMEEFIDDFHGATMIAHNAAFDFSVMR 96


>gi|282899917|ref|ZP_06307878.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
 gi|281195187|gb|EFA70123.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505]
          Length = 317

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 46/188 (24%), Gaps = 44/188 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD-----DHPVELWDCVHDPVMPQV 56
            +L++D E                    + L     +          ++D +  P +   
Sbjct: 21  KSLWLDTE----------IADWNTPCPRLSLIQVLANPTDLIGEFAYIFDVLDKPDISTY 70

Query: 57  LK-EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT-----LVLARSNGLP-SAL 109
              + + +  +  V HN+ F+          +       CT      +  R        L
Sbjct: 71  FISQIMVDVQIQKVFHNADFDL----KYLGKN-SAKNVTCTFKVAKKIGHRILQTTNLKL 125

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           K +   L   S   +EG                  R     +        Y   D     
Sbjct: 126 KTLAVELCHFSDVDKEG-----------GASDWGKRPLCEKQLK------YAAMDTVYLA 168

Query: 170 EIFKRLEP 177
            + +RL  
Sbjct: 169 AVHRRLME 176


>gi|262342177|gb|ACY54599.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 14  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 66

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 67  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASRSSASRKGQEI 108


>gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705]
 gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 1444

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 12/84 (14%)

Query: 46  DCVHDPVMPQVLKEALE---NTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLV 98
           D VH     + +    +   +  +  V HN  F+   L    +     DI  +  I TL 
Sbjct: 478 DMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           L+R          L  + +  K+S
Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVS 559


>gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG]
 gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1444

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 12/84 (14%)

Query: 46  DCVHDPVMPQVLKEALE---NTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLV 98
           D VH     + +    +   +  +  V HN  F+   L    +     DI  +  I TL 
Sbjct: 478 DMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           L+R          L  + +  K+S
Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVS 559


>gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1437

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 12/84 (14%)

Query: 46  DCVHDPVMPQVLKEALE---NTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLV 98
           D VH     + +    +   +  +  V HN  F+   L    +     DI  +  I TL 
Sbjct: 471 DMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 528

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           L+R          L  + +  K+S
Sbjct: 529 LSRMLHPERKNHKLDTLAKQYKVS 552


>gi|297566609|ref|YP_003685581.1| DNA polymerase III subunit epsilon [Meiothermus silvanus DSM 9946]
 gi|296851058|gb|ADH64073.1| DNA polymerase III, epsilon subunit [Meiothermus silvanus DSM 9946]
          Length = 252

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 44/149 (29%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVELW---------------- 45
            + +D ET     L             +I  AF   +    +++                
Sbjct: 79  VVVLDLETTGLSALEN----------EIIEIAFIRLEGEKRQVFQRFVNPGSPIPPFISR 128

Query: 46  --DCVHDP--------VMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHR-W 93
                H           + +     LE+  V I+  N+ F+   L+     L   +    
Sbjct: 129 LTGITHRDLEGAPDVYTVLEEALPLLED-SVLII-QNAPFDLGFLRPRFLRLGYKMDNEV 186

Query: 94  ICTLVLARSNGLPSA---LKAVGEALKLS 119
           I T+  AR      +   L  +  A  L 
Sbjct: 187 IDTVAWARRALPGLSKRGLDHLAWAFDLD 215


>gi|227873963|ref|ZP_03992179.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268]
 gi|227840171|gb|EEJ50585.1| DNA-directed DNA polymerase III [Oribacterium sinus F0268]
          Length = 178

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 38/149 (25%)

Query: 2   ATLFIDFET-------RSPIDLTKCGICKYAEDV---------------CVILFA-FGFD 38
             +  D ET        S I +T     K +++                 +   +     
Sbjct: 3   RFIVFDVETPNRKNNRISAIGITVVEEGKISKEFYSLVNPETNFDYFNVKLTGISKASVK 62

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDI---PIHRWI 94
           D P         P + Q ++    +    +VAHN+ F+  VLK C  + +I   P  R++
Sbjct: 63  DAPTF-------PELWQQIEPLFSDG--MLVAHNASFDMNVLKNCLLDYEIDWKPYARYL 113

Query: 95  CTLVLARSN--GLPSALKAVGEALKLSSQ 121
           CT+ + RS        L  V E   +S Q
Sbjct: 114 CTVKMGRSLFPDRSHKLNMVCEDFGISLQ 142


>gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 205

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 53/210 (25%), Gaps = 60/210 (28%)

Query: 4   LFIDFETRSPIDLTKCGICKYA--EDVCVI------LFAFGFDDHPVELWDCVH------ 49
           L +D ET     +    I   A   +  ++      L        P  +           
Sbjct: 12  LIVDLETTGLNPVNSEIIEIAALRVEGGIVVDKFHTLVKPSIGFIPTYITKLTGITNALV 71

Query: 50  -DPVMPQVLKEALE--NTDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVLARS 102
            D    + +       + +  IVAHN+ F+ + L           I  +  +CT  LA+ 
Sbjct: 72  VDKPTIEEVFPQFLKFSENSIIVAHNAQFDMSFLNSVSYQITGRSIQ-NPVLCTQNLAKR 130

Query: 103 NG---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   +L  +     +   K                                     
Sbjct: 131 LFPDLPSKSLVNLAYHFNIPYNKKHR---------------------------------- 156

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
               D  VT E+FK++            +D
Sbjct: 157 -ALEDALVTYELFKKIIDYLYMFNINKVMD 185


>gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
 gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
          Length = 1535

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 38/149 (25%)

Query: 7   DFE-TRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVE--------------------- 43
           D E T    D+   G     +   +I   A   +D  +                      
Sbjct: 484 DLEGTYVVFDIETTGFSAVTD--RIIEIGAVKVEDGKITDKFSTFVNPKRPIPFRITELT 541

Query: 44  ------LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH-RWIC 95
                 + D      +     E + +    +VAHN+ F+   ++  C    I     ++ 
Sbjct: 542 SITDEMVIDSPDIETILPQFIEFIGDA--VLVAHNASFDVGFIEQNCKRQKIEADFTYVD 599

Query: 96  TLVLARSNGLPSA---LKAVGEALKLSSQ 121
           T+ LAR          L  V +AL +S +
Sbjct: 600 TVALARVLLPALNRFKLDTVAKALNISLE 628


>gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus coahuilensis m4-4]
          Length = 194

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 42/151 (27%), Gaps = 34/151 (22%)

Query: 1   MAT---LFIDFETRSPIDLTKCG------ICKYAEDVCVI-LFAFGFDDHPVELW----- 45
           M T   + +D ET       K G           E   ++  F    + +          
Sbjct: 1   MKTHRYVVVDLETTGNSP--KRGDRIIQLSACLIEHGEIVEQFTSFLNPNKTIPIFIEEL 58

Query: 46  ---------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRW 93
                    D  +   +   L   L ++    VAHN  F+ + L+               
Sbjct: 59  TGITQPMVDDAPNFEQIAPKLISMLNDS--VFVAHNVTFDLSFLQWELHAAGYKTFQGPI 116

Query: 94  ICTLVLARSNGL---PSALKAVGEALKLSSQ 121
           + T+ LA+          L  + E   L  +
Sbjct: 117 LDTVELAKICFPTSNSYKLGDLSEKFNLLHE 147


>gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
 gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus rhamnosus HN001]
          Length = 1444

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 12/84 (14%)

Query: 46  DCVHDPVMPQVLKEALE---NTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLV 98
           D VH     + +    +   +  +  V HN  F+   L    +     DI  +  I TL 
Sbjct: 478 DMVHGSKSEEEVFRLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLE 535

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           L+R          L  + +  K+S
Sbjct: 536 LSRMLHPERKNHKLDTLAKQYKVS 559


>gi|194303165|ref|YP_002014580.1| gp114 [Mycobacterium phage Kostya]
 gi|194153213|gb|ACF34279.1| gp114 [Mycobacterium phage Kostya]
          Length = 261

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 68/232 (29%), Gaps = 42/232 (18%)

Query: 2   ATLFIDFET------RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVHDP 51
             L ID ET         +      I +      V+ FA  +      +    WD     
Sbjct: 4   KILTIDIETQRAVVETFSLFRPFIHIDRVLIPTRVLCFAAKWRGEDKVIFKHAWDDNDQD 63

Query: 52  VMPQVLKEA--LENTDVTIVAHNS-YFERTVLKA---CFNLDIP-----------IHRWI 94
              +++K A  L +    +V  N   F+    +A      L  P           + +W 
Sbjct: 64  AYLKMMKAAHDLLSEADIVVTWNGDRFDVQWFEAEFVRLGLGRPTPYKSVDLIKTVKKWF 123

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
              +++       +   +G+  K+     +   + I    K E                 
Sbjct: 124 KAGLMSMKLDWS-SRMILGDR-KVPHGGTDLWHD-IRYGTKAEKAAAQ------------ 168

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
           +L  +Y   DV +T  +F++  P  +    L+  ++         +      
Sbjct: 169 KLMKQYNIHDVELTERLFEKHLPYLNINLALYARNEDGLLHCTKCNGTDLKR 220


>gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
 gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH1134]
 gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
          Length = 315

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 69/258 (26%), Gaps = 39/258 (15%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIA-----RFCKGETHECLYDRNKPNHRE 152
                +     L+ +   L +         + I      + C     E     NK     
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEEGKRKVNKAM--- 183

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                  Y    V       KR            YLD         + V         + 
Sbjct: 184 -LDETAVYEA--VKEILACNKRNVEWLRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LT 238

Query: 213 VERTKLDQELESLTYGLV 230
               +  +E+ +      
Sbjct: 239 EILEEDVKEICTSLKCEP 256


>gi|29565991|ref|NP_817562.1| gp115 [Mycobacterium phage Cjw1]
 gi|109302866|ref|YP_654868.1| gp115 [Mycobacterium phage 244]
 gi|194303406|ref|YP_002014431.1| gp112 [Mycobacterium phage Porky]
 gi|29424716|gb|AAN01727.1| gp115 [Mycobacterium phage Cjw1]
 gi|88910157|gb|ABD58088.1| gp115 [Mycobacterium phage 244]
 gi|194150891|gb|ACF33927.1| gp112 [Mycobacterium phage Porky]
 gi|255928430|gb|ACU42046.1| gp114 [Mycobacterium phage Pumpkin]
          Length = 261

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 68/232 (29%), Gaps = 42/232 (18%)

Query: 2   ATLFIDFET------RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL----WDCVHDP 51
             L ID ET         +      I +      V+ FA  +      +    WD     
Sbjct: 4   KILTIDIETQRAVVETFSLFRPFIHIDRVLIPTRVLCFAAKWRGEDKVIFKHAWDDNDQD 63

Query: 52  VMPQVLKEA--LENTDVTIVAHNS-YFERTVLKA---CFNLDIP-----------IHRWI 94
              +++K A  L +    +V  N   F+    +A      L  P           + +W 
Sbjct: 64  AYLKMMKAAHDLLSEADIVVTWNGDRFDVQWFEAEFVRLGLGRPTPYKSVDLIKTVKKWF 123

Query: 95  CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
              +++       +   +G+  K+     +   + I    K E                 
Sbjct: 124 KAGLMSMKLDWS-SRMILGDR-KVPHGGTDLWHD-IRYGTKAEKAAAQ------------ 168

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
           +L  +Y   DV +T  +F++  P  +    L+  ++         +      
Sbjct: 169 KLMKQYNIHDVELTERLFEKHLPYLNINLALYARNEDGLLHCTKCNGTDLKR 220


>gi|262212353|gb|ACY35793.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 35/119 (29%), Gaps = 14/119 (11%)

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARS 416
                 R    A+ G+ +V ADL+GIE R+LA      +  +        D++     + 
Sbjct: 7   PSGPEFRRLFTATPGQVMVGADLSGIELRMLAHYLARYDGGRYADILLNGDIHQVNADKI 66

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
                       R + K +  A  Y  G         T    L       K       +
Sbjct: 67  ---------GITRKLVKNVTYAFLYGAGDVKI---GLTYDKQLPPNKAKKKGAEIRAAY 113


>gi|262212165|gb|ACY35699.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V AD AGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADPAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIRALDGRKII 145


>gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
 gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium D344SRF]
          Length = 1452

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL---P 106
           +VL+  LE + D  +VAHN+ F+   L         +    +  I TL LAR        
Sbjct: 494 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARH-GIPEAANPVIDTLELARYLYPQFKR 552

Query: 107 SALKAVGEALKLSSQ 121
             L  + +   +S +
Sbjct: 553 FGLGVLSKKFGVSLE 567


>gi|254499192|ref|ZP_05111872.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
 gi|254351582|gb|EET10437.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
          Length = 232

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 36/155 (23%), Gaps = 44/155 (28%)

Query: 1   MATLFIDFETRS------------------PIDLTKCGICKYAEDVCVILFAFGFDDHPV 42
           M  + +D ET                       LT      Y     ++       D   
Sbjct: 1   MRQIVLDTETTGIGHEQGHRVIEIGCVELIDRKLTGRHFHVYLNPERLV-------DEGA 53

Query: 43  ELWDCVHDPVMPQVLKEALENT---------DVTIVAHNSYFERTVLK---ACFNLDIPI 90
                + D  +    K    +             ++ HN+ F+   L            +
Sbjct: 54  FRVHGISDEFLQD--KPLFADKVSEFLQFVGGAELIIHNAAFDMGFLNSELRHVQWKKKL 111

Query: 91  H---RWICTLVLARSNGLPS--ALKAVGEALKLSS 120
                   TL  AR        +L A+ +   +  
Sbjct: 112 EDYCDVFDTLTYARDKFPGQRNSLDALCKRFGIDH 146


>gi|229098054|ref|ZP_04229002.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
 gi|228685245|gb|EEL39175.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-29]
          Length = 318

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 61/249 (24%), Gaps = 35/249 (14%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDH---PVELWDCV----- 48
             + IDFET         + +    KY     V  F ++  +     P  +         
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSY-VNPERPIPSRITSLTGITNY 70

Query: 49  --HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA- 100
              D    + +            IVAHN+ F+   LK          P ++ I T+ LA 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFLAK 130

Query: 101 -RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET---HECLYDRNKPNHREAWR 155
               +     L+ +   L +         + I      +     E    R          
Sbjct: 131 KYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCTSIEEKGKRKVNKAVLDET 190

Query: 156 LFGEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
              E           +  +             YLD         + V         +   
Sbjct: 191 AVYE-----AVKEILVRNKRNVEWLRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTEI 243

Query: 215 RTKLDQELE 223
                +E+ 
Sbjct: 244 VEDDVKEIC 252


>gi|322615918|gb|EFY12835.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620703|gb|EFY17563.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623946|gb|EFY20783.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627394|gb|EFY24185.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630701|gb|EFY27465.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638079|gb|EFY34780.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640565|gb|EFY37216.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322656913|gb|EFY53199.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657376|gb|EFY53648.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663696|gb|EFY59896.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666529|gb|EFY62707.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672312|gb|EFY68424.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676376|gb|EFY72447.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679531|gb|EFY75576.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686140|gb|EFY82124.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323194984|gb|EFZ80170.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200107|gb|EFZ85194.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201072|gb|EFZ86141.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209469|gb|EFZ94402.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212279|gb|EFZ97103.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216584|gb|EGA01310.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222477|gb|EGA06847.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225788|gb|EGA10008.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228671|gb|EGA12800.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236715|gb|EGA20791.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239784|gb|EGA23831.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242168|gb|EGA26197.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249407|gb|EGA33323.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252258|gb|EGA36109.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256651|gb|EGA40381.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323261315|gb|EGA44902.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265505|gb|EGA49001.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271707|gb|EGA55125.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 783

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|323527026|ref|YP_004229179.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
 gi|323384028|gb|ADX56119.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
          Length = 386

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP- 106
             +   L   L       VAHN+ F+R  L+       +       +CT+ L+R+     
Sbjct: 80  EAIAPELFARL--DGKLFVAHNASFDRGFLRGEFRRVGISFDP-DVLCTVRLSRALFPSE 136

Query: 107 --SALKAVGEALKL 118
               L A+ E   L
Sbjct: 137 KRHGLDALVERHAL 150


>gi|224581940|ref|YP_002635738.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224466467|gb|ACN44297.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 783

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|168464359|ref|ZP_02698262.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|200388730|ref|ZP_03215342.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|195632975|gb|EDX51429.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|199605828|gb|EDZ04373.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 783

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|168234853|ref|ZP_02659911.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737454|ref|YP_002113115.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712956|gb|ACF92177.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291914|gb|EDY31264.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 783

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|198245956|ref|YP_002214050.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197940472|gb|ACH77805.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326621794|gb|EGE28139.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 783

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|167550719|ref|ZP_02344476.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205324352|gb|EDZ12191.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 783

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|332687228|ref|YP_004457002.1| exonuclease [Melissococcus plutonius ATCC 35311]
 gi|332371237|dbj|BAK22193.1| exonuclease [Melissococcus plutonius ATCC 35311]
          Length = 176

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY-AEDVCVI-----LFA----FGFDDHPVELW---DC 47
           M  + +DFET S    + C +     E+  ++     L      F + +  +      D 
Sbjct: 1   MNFIAMDFETASHERHSACSLALVKVENSRIVDEYYTLIQPETQFFWKNIQIHGIHPEDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRW--ICTLVLARS 102
              P  P++    +     +  IVAHN+ F+  VL +C N   +P   +  +CT+  +R 
Sbjct: 61  TDAPKFPEIWQGIQLFFQLNQLIVAHNAAFDCNVLASCLNYYKLPQPNYLSLCTVKTSRK 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  +  AL + 
Sbjct: 121 FFRELPNHKLDTICRALNIP 140


>gi|82548268|gb|ABB82959.1| putative DNA polymerase type III, exonuclease domain [uncultured
           organism HF70_19B12]
          Length = 270

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 42/155 (27%), Gaps = 47/155 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF---GFDDHPVELWDC-VHDPVMPQ-- 55
             L  D ET                   ++ +AF     D   V   +       +P+  
Sbjct: 8   KVLGFDTETTGLNP----------RKDRILQYAFIGRDVDGSSVCQVELIDPGIKIPEAS 57

Query: 56  ----------------------VLKEALENTDVTIVAHNSY-FERTVLKACF---NLDIP 89
                                  + E +      IV HN   F+   ++  F      +P
Sbjct: 58  MNVHGISNEDVTGRGSFGMHSNDIAELI--DGAIIVGHNINAFDWRFIEFEFMRVGEAVP 115

Query: 90  -IHRWICTLVLARSNGLP--SALKAVGEALKLSSQ 121
             +  + TL LAR   +P    L  + +   +   
Sbjct: 116 SPYALVDTLELARGLRIPGRHTLGHLCKRYGIGLD 150


>gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
 gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
           255-15]
          Length = 1431

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 38/141 (26%), Gaps = 32/141 (22%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDCV----- 48
           T    D+   G+     +  + L A    D  V                   D       
Sbjct: 413 TFVVFDVETTGLSA-MYNKIIELAAVKIYDGDVIDKFEAFADPKHLLSATTIDLTGITDE 471

Query: 49  --HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
                  P+ + +   +      +VAHN+ F+   L       N +      I TL LAR
Sbjct: 472 MVRGKPDPEQVVKEFMDWAGGSILVAHNASFDIGFLNATLRSGNHEESTLPVIDTLELAR 531

Query: 102 SNGLP---SALKAVGEALKLS 119
                     L  + +   + 
Sbjct: 532 VLMPSLKNHRLNTLAKRFDIE 552


>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 1437

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLA 100
           L D      +    KE + +     VAHN+ F+   +   +    L    +  I TL L+
Sbjct: 481 LVDAPEIDDVLTEFKEWVGDA--IFVAHNASFDMGFIDTGYERAGLGNYTNGVIDTLELS 538

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R+         L  + +   + 
Sbjct: 539 RTINTEFGKHGLNFLAKKYGVE 560


>gi|207855610|ref|YP_002242261.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206707413|emb|CAR31686.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 783

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|168820920|ref|ZP_02832920.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|238911155|ref|ZP_04654992.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|205342424|gb|EDZ29188.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320084335|emb|CBY94128.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 783

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|168180335|ref|ZP_02614999.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           NCTC 2916]
 gi|226949002|ref|YP_002804093.1| putative DNA polymerase III subunit epsilon [Clostridium botulinum
           A2 str. Kyoto]
 gi|182668792|gb|EDT80770.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           NCTC 2916]
 gi|226843902|gb|ACO86568.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A2 str. Kyoto]
          Length = 195

 Score = 45.9 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 25/122 (20%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVILFA----FGFD--DHPVELWDCVH 49
           M  +FID ET          LT C           + FA    F  D  +   E      
Sbjct: 1   MKKIFIDTETTGLEPGEIIQLTYCVCDINFRGEEKVSFAKNFFFDVDYIEESAEAIHGFS 60

Query: 50  DPVMP-----QVLKEALEN-----TDVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
              +      +  K+          D   +AHN  F+R           +++     + C
Sbjct: 61  VEKLKILSKGKKFKDLASEISSDLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPKEFFC 120

Query: 96  TL 97
           T+
Sbjct: 121 TM 122


>gi|212545983|ref|XP_002153145.1| hypothetical protein PMAA_010410 [Penicillium marneffei ATCC 18224]
 gi|210064665|gb|EEA18760.1| hypothetical protein PMAA_010410 [Penicillium marneffei ATCC 18224]
          Length = 285

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 74/266 (27%), Gaps = 35/266 (13%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-HPVELWD----------CVHDPV 52
           L+ D E          G+ +   +  + + +      + V L D            +D  
Sbjct: 32  LYFDLE----------GV-RLGRNGTISIISVFIQPLNQVYLIDVFTLSEKAFLITNDKQ 80

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA-------RSNGL 105
               LK  LE   +  V  +   +   + +   + +   + +  + LA          GL
Sbjct: 81  T--SLKTILEAPSIPKVFFDVRNDSDAMCSHHGIRLQCVKDLQVMELAVRFGSQKYVAGL 138

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              ++       +  QK ++ K  + +            +             +YC  DV
Sbjct: 139 AKCIENHANLPPIELQKWKQIKASVGQLWDPRR--GGSYQVFNQRPIRTD-IIQYCAQDV 195

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE-LES 224
           T+   ++        + Q  ++      +    +  +     N   + +R    +E +E 
Sbjct: 196 TILPSLWNVYHQKLRQPQSGFWRCMVFYNVEKRIAESQGPRYNPEAESKRYGWTKEYIEQ 255

Query: 225 LTYGLVSSSRCLEKLKTWLFLETGLH 250
                             +  +  L 
Sbjct: 256 ERDSWNDDIMDGALQGEAIIDKRWLT 281


>gi|154283185|ref|XP_001542388.1| DNA polymerase gamma [Ajellomyces capsulatus NAm1]
 gi|150410568|gb|EDN05956.1| DNA polymerase gamma [Ajellomyces capsulatus NAm1]
          Length = 1126

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 40/330 (12%), Positives = 83/330 (25%), Gaps = 75/330 (22%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ V A  G   V AD+   E
Sbjct: 650 PQIIPMGTITRRAVENTWLTASNAKAN------RVGSELKAMVRAPPGYVFVGADVDSEE 703

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   +S        T       R   KV      Y
Sbjct: 704 L-WIASLVGDAQFQIHGGNAIGFMTLEGTKSAGTDLHSKTANILGISRNDAKVFNYGRIY 762

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +++         +  +E +      + + +N       + F+  
Sbjct: 763 GAGLKFAATLLRQFNPSMSEQETKRVAANLYKETKGTRTNRKILSDNPFWRGGTESFVFN 822

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E   +  R +                  +       A  RR +        +      
Sbjct: 823 KLEEFAEQERPRTP----------------VLGAGITEALMRRFINKGSFMTSR------ 860

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                                                   +Q+   D   +L   M   +
Sbjct: 861 ------------------------------------INWAIQSSGVDYLHLLIISMDFLI 884

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                   + +TVHDEI     + D++ A+
Sbjct: 885 RRFNLDARLAITVHDEIRYLVKEHDKYRAA 914


>gi|281206812|gb|EFA80996.1| 3'-5' exonuclease [Polysphondylium pallidum PN500]
          Length = 1011

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 56/238 (23%), Gaps = 39/238 (16%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEAL-KL 118
             N  +  V H S  +   L+  F + I       T   +R      ++L  +      +
Sbjct: 342 FTNPKIVKVLHGSESDVKWLQRDFGIYI--VNMFDTGQASRILEYPSASLAFLLRFYCGV 399

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
            + K                   L D       E      +Y + D      I+ RL   
Sbjct: 400 DANK----------------KFQLADWRIRPVPEE---MIKYAREDTHYLLYIYDRLRNE 440

Query: 179 SS-KEQELWYLDQTINDRGYCV----------DVALAHTLNQIVDVERTKLDQELESLTY 227
              K +        +  R   +          D        +   +       ++  L Y
Sbjct: 441 LVLKGKSTNNYLMEVLRRSKEICLIKYEKDILDENSHAEYLKKNGITYNPAQLKIFRLLY 500

Query: 228 GLVSSSRCLEKLKTWLFLETGLH--LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRA 283
                    +       L   +   + +   TT   +L      TP    +       
Sbjct: 501 NWREKVARDDDESVRYILPNSMMQLIVEKQPTTITDLL---ACCTPIPPYIKQYGHEL 555


>gi|145295805|ref|YP_001138626.1| hypothetical protein cgR_1730 [Corynebacterium glutamicum R]
 gi|140845725|dbj|BAF54724.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 403

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 54/190 (28%), Gaps = 35/190 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALEN 63
            ID E  S           +  D    L           L+D     P + Q LK  L  
Sbjct: 37  AIDTERASG----------FRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVLN- 85

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
                + H +  +   L     LD+       T +  R  G     L A+ E +      
Sbjct: 86  -GQEWIIHAASTDLPSLAW---LDLHPGLLFDTELAGRLAGFDHVNLAAMVEQI------ 135

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                                D +K    E+W     Y   DV +  E+   +  +  ++
Sbjct: 136 ---------FDLHLLKGHGSEDWSKRPLPESW---LNYAALDVEMLLELADVMAEILDQQ 183

Query: 183 QELWYLDQTI 192
            +L + +Q  
Sbjct: 184 GKLPWAEQEF 193


>gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 1444

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 73/289 (25%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 486 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKADNAVVDTLEL 543

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     +   H   
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDINFHDSL 603

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y + DV +    ++                  Q    R  
Sbjct: 604 NDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 663

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + V  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 664 LI-VGTACSQGELFEAMMQKGMQAAEKVVEFYDFIEIQPKPVYAPLIER 711


>gi|296277367|ref|ZP_06859874.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MR1]
          Length = 30

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 647 LYHLMTSNPSWAKGLPLKAEGYESKRYRK 675
           +  +M     WAKGL L ++G+ S  Y K
Sbjct: 1   IETIMNKPVDWAKGLNLNSDGFTSPFYMK 29


>gi|21324671|dbj|BAB99294.1| Ribonuclease D [Corynebacterium glutamicum ATCC 13032]
          Length = 421

 Score = 45.9 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 54/190 (28%), Gaps = 35/190 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALEN 63
            ID E  S           +  D    L           L+D     P + Q LK  L  
Sbjct: 55  AIDTERASG----------FRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVLN- 103

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
                + H +  +   L     LD+       T +  R  G     L A+ E +      
Sbjct: 104 -GQEWIIHAASTDLPSLAW---LDLHPGLLFDTELAGRLAGFDHVNLAAMVEQI------ 153

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                                D +K    E+W     Y   DV +  E+   +  +  ++
Sbjct: 154 ---------FDLHLLKGHGSEDWSKRPLPESW---LNYAALDVEMLLELADVMAEILDQQ 201

Query: 183 QELWYLDQTI 192
            +L + +Q  
Sbjct: 202 GKLPWAEQEF 211


>gi|19553105|ref|NP_601107.1| ribonuclease D [Corynebacterium glutamicum ATCC 13032]
 gi|62390740|ref|YP_226142.1| ribonuclease D protein [Corynebacterium glutamicum ATCC 13032]
 gi|41326078|emb|CAF20241.1| PROBABLE RIBONUCLEASE D PROTEIN [Corynebacterium glutamicum ATCC
           13032]
          Length = 403

 Score = 45.5 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 54/190 (28%), Gaps = 35/190 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEALEN 63
            ID E  S           +  D    L           L+D     P + Q LK  L  
Sbjct: 37  AIDTERASG----------FRYDDRAFLIQIRRRGSGTLLFDPEQFRPELTQALKPVLN- 85

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
                + H +  +   L     LD+       T +  R  G     L A+ E +      
Sbjct: 86  -GQEWIIHAASTDLPSLAW---LDLHPGLLFDTELAGRLAGFDHVNLAAMVEQI------ 135

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                                D +K    E+W     Y   DV +  E+   +  +  ++
Sbjct: 136 ---------FDLHLLKGHGSEDWSKRPLPESW---LNYAALDVEMLLELADVMAEILDQQ 183

Query: 183 QELWYLDQTI 192
            +L + +Q  
Sbjct: 184 GKLPWAEQEF 193


>gi|27468061|ref|NP_764698.1| dinG protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866955|ref|YP_188602.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus epidermidis RP62A]
 gi|251810883|ref|ZP_04825356.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876111|ref|ZP_06284978.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis SK135]
 gi|293366576|ref|ZP_06613253.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81819394|sp|Q5HP88|DING_STAEQ RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81842831|sp|Q8CP71|DING_STAES RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|27315606|gb|AAO04740.1|AE016747_237 dinG protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637613|gb|AAW54401.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus epidermidis RP62A]
 gi|251805563|gb|EES58220.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295136|gb|EFA87663.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus epidermidis SK135]
 gi|291319345|gb|EFE59714.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329725381|gb|EGG61864.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU144]
 gi|329735254|gb|EGG71546.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU045]
 gi|329737465|gb|EGG73719.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU028]
          Length = 902

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 89/288 (30%), Gaps = 41/288 (14%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL---ARSNGL 105
            +   + + +++     VAHN  F+   +K  F   N+     R + TL L   A     
Sbjct: 73  EVADDIYQLIKD--CVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLELFKIAFPTDK 130

Query: 106 PSALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
              L A+ E+  +                K +I  F K E       +      +  + +
Sbjct: 131 SYQLSALAESHHIPLNNAHRADEDATTTAKLMIKAFEKFEQLHLDTQKQLYYLSKNLK-Y 189

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC-VDVA-LAHTLNQIVDVER 215
             Y      V    ++   P +  EQ    + +   D     V+       L + V    
Sbjct: 190 DLYHILFEMV--RNYQTKPPNNQFEQFEQIIYRKQIDLKKPAVNFDGTLKDLYKNVTQSL 247

Query: 216 ------------TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQ 260
                         +  +L      ++ +     K   +L   T  ++E       +T  
Sbjct: 248 NLTYRPQQLYLAEIILDQLMHSDKAMIEAPLGSGKSLAYLLAATMYNIETGRHVMISTNT 307

Query: 261 RVLSS--NKKLTPQAIQVFNNRM--RASRSAVLKLN-TLVEAMNSDGR 303
           ++L S   +K  P    V + ++     +S    ++  L+  +  D  
Sbjct: 308 KLLQSQLLEKDIPLLNDVLDFKINASLIKSKNDYISLGLISQILKDDT 355


>gi|320538891|ref|ZP_08038567.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
           Tucson]
 gi|320031051|gb|EFW13054.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
           Tucson]
          Length = 247

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 50/188 (26%), Gaps = 47/188 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVINRRLTGRHYHVYVKPDRLVDP 60

Query: 41  PVELW---------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DI 88
                         D      +     + +   ++  V HN+ F+   +   F L    I
Sbjct: 61  EAYGVHGISDEFLADKPTFDQIADEFLDFIRGGEL--VIHNAAFDIGFMDHEFRLLQQGI 118

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
           P     CT    L++AR         L A+    ++ + K      L+      E +  +
Sbjct: 119 PKTETFCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAM 178

Query: 143 YDRNKPNH 150
                   
Sbjct: 179 TGGQTSMT 186


>gi|316967875|gb|EFV52241.1| putative ubiquitin--protein ligase [Trichinella spiralis]
          Length = 1284

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 52/177 (29%), Gaps = 43/177 (24%)

Query: 54  PQVLKEA---LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA-RSNGLPSAL 109
              L       ++ +  I+ HN  F+RT +K  + L     R+  T+ +     GL    
Sbjct: 230 LDDLIPLGRKADDPERIIIGHNVGFDRTFVKEEYFLKSSRLRFWDTMSMHIAVCGLAGDQ 289

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR------------------ 151
           + +  A +  ++     + L+      +    L  +N                       
Sbjct: 290 RVLFMAARKGNRTKASEEALVHTENPTKESNVLGFQNWKWLDVTSTNSLIEVHRFHCPNS 349

Query: 152 ---------------------EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
                                E ++L   YC  DV  T E+F  L     +    ++
Sbjct: 350 GLFVAKELRDLFLVGTMSDIREKFQLLMTYCATDVAATFEVFSMLMDQFWQRYANYH 406



 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 4/140 (2%)

Query: 356 PLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYAR 415
               I   +R  +IA +G   V AD+   E  + A  +          T     +    +
Sbjct: 771 QPDRIGSELRGLIIAPKGYCFVGADVDSQELWIAALFSDSYGVKIHGSTPISWILLKGDK 830

Query: 416 SFNVAPAQVT-KDQ---RAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSA 471
           S       +T K+    R+  K++     Y  G     ++  T    L+           
Sbjct: 831 SKGTDQHSLTAKEMGVSRSQAKILNYGRIYGAGRPFATRLLKTFLPTLSDEDVKKMARKL 890

Query: 472 PEEWEDAENFCRWMQENHPE 491
             + + +  + R + E    
Sbjct: 891 YRKTKGSAVYLRELTEKGRT 910


>gi|302697639|ref|XP_003038498.1| hypothetical protein SCHCODRAFT_103723 [Schizophyllum commune H4-8]
 gi|300112195|gb|EFJ03596.1| hypothetical protein SCHCODRAFT_103723 [Schizophyllum commune H4-8]
          Length = 644

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 39/148 (26%), Gaps = 11/148 (7%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            V L     D   + L       + P+ L+  LE+  V         +   L     + +
Sbjct: 77  RVALVQVA-DGDHIVLVQVSQMQLFPEQLRLLLEDPSVAKTGVGISGDAQKLYRDHGISM 135

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                +   ++ RS              K           LI  + K E  +    R+  
Sbjct: 136 --SNVVDLGLMTRSVDN--------ANWKGPYSSPIGLARLIDFYEKRELRKGRISRSNW 185

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     +Y   D      ++ RL 
Sbjct: 186 EKVPLSDEQKQYAANDAHCAWVLYGRLR 213


>gi|261253420|ref|ZP_05945993.1| ribonuclease D [Vibrio orientalis CIP 102891]
 gi|260936811|gb|EEX92800.1| ribonuclease D [Vibrio orientalis CIP 102891]
          Length = 371

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 39/136 (28%), Gaps = 19/136 (13%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V    F      +  + T
Sbjct: 47  FDGEKLSLIDPTVIEDMTA-FVELLKDTSVLKVLHACGEDLEVFHNSFG--CLPYPMVDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +             ++++ +       +  +                  
Sbjct: 104 QLMAAFLGHGLSTGFAALVENYLGVELDKSESRTDWLARPLS----------------DK 147

Query: 157 FGEYCKGDVTVTREIF 172
             EY   DV   + ++
Sbjct: 148 QLEYAAADVYYLQPLY 163


>gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 315

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 69/258 (26%), Gaps = 39/258 (15%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIA-----RFCKGETHECLYDRNKPNHRE 152
                +     L+ +   L +         + I      + C     E     NK     
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEEGKRKVNKAM--- 183

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                  Y    V       KR            YLD         + V         + 
Sbjct: 184 -LDETAVYEA--VKEILACNKRNVEWLRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LT 238

Query: 213 VERTKLDQELESLTYGLV 230
               +  +E+ +      
Sbjct: 239 EILEEDVKEICTSLKCEP 256


>gi|229117071|ref|ZP_04246451.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
 gi|228666360|gb|EEL21822.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-3]
          Length = 315

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 61/249 (24%), Gaps = 35/249 (14%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDH---PVELWDCV----- 48
             + IDFET         + +    KY     V  F ++  +     P  +         
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSY-VNPERPIPSRITSLTGITNY 67

Query: 49  --HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA- 100
              D    + +            IVAHN+ F+   LK          P ++ I T+ LA 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFLAK 127

Query: 101 -RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET---HECLYDRNKPNHREAWR 155
               +     L+ +   L +         + I      +     E    R          
Sbjct: 128 KYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCTSIEEKGKRKVNKAVLDET 187

Query: 156 LFGEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
              E           +  +             YLD         + V         +   
Sbjct: 188 AVYE-----AVKEILVRNKRNVEWLRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTEI 240

Query: 215 RTKLDQELE 223
                +E+ 
Sbjct: 241 VEDDVKEIC 249


>gi|154253761|ref|YP_001414585.1| ribonuclease D [Parvibaculum lavamentivorans DS-1]
 gi|154157711|gb|ABS64928.1| ribonuclease D [Parvibaculum lavamentivorans DS-1]
          Length = 427

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 48/173 (27%), Gaps = 22/173 (12%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           + L         + +     D  +       ++N +V  V H +  +  +        IP
Sbjct: 82  LCLIQLAGPSDELIVDPLAPDLDL-APFYALMKNRNVVKVFHAARQDIEIFC-HEGKAIP 139

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
                 T V A   G   +                  + L+ +   G   +     +   
Sbjct: 140 -DPLFDTQVAAMVCGFGDS---------------VGYETLVRKLAGGSVDKSSRFTDWSR 183

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
              + +   +Y   DVT  R I++ L    +  +   ++     +     D  
Sbjct: 184 RPLSDKQL-QYAMADVTYLRTIYEVLAKRLTHTKRAHWV---AEEMAVLQDPE 232


>gi|71907536|ref|YP_285123.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
 gi|71847157|gb|AAZ46653.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
          Length = 453

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 28/143 (19%)

Query: 1   MATLFI-DFETR----SPIDLTKCGICKYAEDVCVILFAFGFDDH--------------P 41
           M  L   D ET     +   +T+ GI +   D  V  +    +                 
Sbjct: 1   MRPLAFVDLETTGATATHDRITEIGIVEVDADGSVREWQQLVNPGMRIPPFIEQLTGISD 60

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLV 98
             + D      +   + + LE      +AHN+ F+   LK       +       +CT+ 
Sbjct: 61  EMVADAPPFEAIAGEVMKRLE--GRLFIAHNARFDYGFLKNEFKRLGVTFR-AAVLCTVK 117

Query: 99  LARSNGLP---SALKAVGEALKL 118
           L+R+         L ++ E  +L
Sbjct: 118 LSRTLFPEHKRHNLDSLIERHEL 140


>gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
 gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus caprae C87]
          Length = 900

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 56/194 (28%), Gaps = 45/194 (23%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------------D 50
           T + +DL   G     +   +I     F  +  ++ D  H                   +
Sbjct: 5   TYAVVDLETTGNQLDYD--EIIQIGITFVSNH-KIIDTYHSMIRTDLEIPPFIQALTSIE 61

Query: 51  PVMPQV---LKEALEN-----TDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTLVL 99
             M        E  E+      D   VAHN  F+   +K  FN   +     + + TL L
Sbjct: 62  EDMLAQAPYFNEVAEDIYDQIKDCIFVAHNISFDLNFIKNAFNNCDIQFKPKKVMDTLEL 121

Query: 100 ---ARSNGLPSALKAVGEALKLSSQK--------MEEGKELIARFCKGETHECLYDRNKP 148
              A        L  + +A  +   K            K +I  F K E+      +   
Sbjct: 122 FKIAFPTDKSYQLSELAQAHDIPLDKAHRADEDATTTAKLMIKAFKKFESLPLDTQKQLY 181

Query: 149 NHREAWRLFGEYCK 162
              +  + +  Y  
Sbjct: 182 YLSKNLK-YDLYNI 194


>gi|299473136|emb|CBN78712.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1278

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 27/203 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E  S    T  G+        V L      +    +        M   L    
Sbjct: 334 REIAVDLEHHSFR--TFLGV--------VCLMQLSTREQDYIVDPLKLRGEM-GRLLPVF 382

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLS 119
            + ++  V H S  +   L+      + +     T   AR  GLPS  L  + E      
Sbjct: 383 SDPNIVKVFHGSDSDVLWLQRDLG--LYLVNMFDTGQAARQLGLPSFGLAHLLEKFCDFV 440

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV--TVTREIFKRLEP 177
             K  +  +   R    +      +R+  +              D    +      R E 
Sbjct: 441 PDKKHQLSDWRMRPLPADMLLIDLERSGGDVAVK-------AVLDASREICLR---RFEK 490

Query: 178 LSSKEQELWYLDQTINDRGYCVD 200
            + +E+    + +     G   D
Sbjct: 491 PAFQEKGWSEVLKRQGGNGVLDD 513


>gi|253700819|ref|YP_003022008.1| exonuclease RNase T and DNA polymerase III [Geobacter sp. M21]
 gi|251775669|gb|ACT18250.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M21]
          Length = 312

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 51/171 (29%), Gaps = 61/171 (35%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVIL--FAFGFDDHPVELWDCVHDP--------VM 53
           L +D ET             Y  D  + L   AF +D    E++               +
Sbjct: 55  LCLDTETTGLD---------YKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGVPI 105

Query: 54  PQVLKEA--------------------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           P+ +KE                     L      ++AHN+ F+R  ++A F     +  W
Sbjct: 106 PEEVKEITGISDDMVRGQAFDDPFINLLAEKSHLVIAHNAAFDRKFVEARFPAFTKL-PW 164

Query: 94  ICT------------------LV---LARSNGLPSALKAVGEALKLSSQKM 123
            CT                  L+    + +     AL      L L  +++
Sbjct: 165 ACTVSQIDWGAERVSSRTLEYLLFKTASLTINAHRALDDAEGVLGLLLERL 215


>gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37]
 gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           genitalium G37]
 gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 1451

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 19/195 (9%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHN-SYFERTVLKACF---NLDIPIHRWICTLVLARSNG 104
                 + ++  L++    +VAHN   F+   L+  F   N+    +  I TL L+ +  
Sbjct: 480 DQQQGLEKIRNYLDD--CVMVAHNGINFDLPFLQTQFEKYNIKPLTNPLIDTLCLSWALN 537

Query: 105 L---PSALKAVGEALKLS---------SQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                  L  +   LKL              E  K++   F K      +    + +   
Sbjct: 538 PLFSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVFFYFKKQLKEMGINTLTEIDQNL 597

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQTINDRGYCVDVALAHTLNQIV 211
             +   +  K   T T  ++ + +       E+  +     N     V  +      +  
Sbjct: 598 NKKCQIDLMKRVFTNTAIVYVKNQRGFQNLYEMLSIALTDHNANRPLVLASSLAKFRKSF 657

Query: 212 DVERTKLDQELESLT 226
            +    +  ++    
Sbjct: 658 LLTENPVQGDIFKAA 672


>gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
 gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
          Length = 1450

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
           +VL+  LE + D  +VAHN+ F+   L    A + +    +  I TL LAR         
Sbjct: 492 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYPQFKRF 551

Query: 108 ALKAVGEALKLSSQ 121
            L  + +   +S +
Sbjct: 552 GLGVLSKKFGVSLE 565


>gi|238755084|ref|ZP_04616431.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
 gi|238706644|gb|EEP99014.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
          Length = 254

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVINRRLTGRNFHVYIKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDI 88
                  + D  +    K    +             +V HN+ F+   +          I
Sbjct: 61  EAYGVHGISDEFLLD--KPTFADIAPEFIEFIRGAELVIHNATFDIGFMYYEFRMLQQAI 118

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P     CT    L++AR         L A+ +   + + K      L+ 
Sbjct: 119 PNTDTFCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLD 167


>gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
 gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
           subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1162]
 gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
          Length = 1452

 Score = 45.5 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
           +VL+  LE + D  +VAHN+ F+   L    A + +    +  I TL LAR         
Sbjct: 494 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYPQFKRF 553

Query: 108 ALKAVGEALKLSSQ 121
            L  + +   +S +
Sbjct: 554 GLGVLSKKFGVSLE 567


>gi|332162776|ref|YP_004299353.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606882|emb|CBY28380.1| DNA polymerase III epsilon subunit [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667006|gb|ADZ43650.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861137|emb|CBX71400.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica W22703]
          Length = 260

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 64/247 (25%), Gaps = 69/247 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHKIIEIG-AVEVINRRLTGRNFHVYIKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDI 88
                  + D  +    K    +             +V HN+ F+   +         DI
Sbjct: 61  EAYGVHGISDEFLAD--KPTFADIAPEFIEFIRGAELVIHNAAFDIGFMDYEFRMLQQDI 118

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
           P     CT    L+LAR         L A+ +  ++ + K      L+      E +  +
Sbjct: 119 PKTETFCTITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAM 178

Query: 143 ------------YDRNKPNHREAWRLFGE--------YCKGDVTVTR--EIFKRLEPLSS 180
                        D+++ N  +  +            Y   D        +   ++   S
Sbjct: 179 TGGQTSLSFSMEGDQSQNNSSDDIQRITRPASGLKIIYAAEDELAAHESRLDLVMKKGGS 238

Query: 181 KEQELWY 187
               +  
Sbjct: 239 CLWRMPL 245


>gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
 gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
          Length = 1450

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
           +VL+  LE + D  +VAHN+ F+   L    A + +    +  I TL LAR         
Sbjct: 492 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYPQFKRF 551

Query: 108 ALKAVGEALKLSSQ 121
            L  + +   +S +
Sbjct: 552 GLGVLSKKFGVSLE 565


>gi|241758776|ref|ZP_04756889.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
 gi|241320984|gb|EER57197.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
          Length = 245

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 30/176 (17%)

Query: 2   ATLFIDFETRSPID------LTKCGICKYAE---DVCVILF----------AFGFDDHPV 42
             + +D ET           +   G+        D  + L+          A       +
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPERDMPEEAAKVHGLTI 63

Query: 43  ELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFN---LDIPIHRWI 94
           E+ +  + P   QV K+   +      ++ HN+ F+   L           ++    +  
Sbjct: 64  EVLEAKNAPPFAQVGKQI-ADFIRGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCKVT 122

Query: 95  CTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            TL +AR       ++L A+     +   K      LI     GE +  +  +   
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQFD 178


>gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 1450

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
           +VL+  LE + D  +VAHN+ F+   L    A + +    +  I TL LAR         
Sbjct: 492 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYPQFKRF 551

Query: 108 ALKAVGEALKLSSQ 121
            L  + +   +S +
Sbjct: 552 GLGVLSKKFGVSLE 565


>gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
 gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1071]
 gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E1679]
 gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium U0317]
          Length = 1450

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
           +VL+  LE + D  +VAHN+ F+   L    A + +    +  I TL LAR         
Sbjct: 492 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYPQFKRF 551

Query: 108 ALKAVGEALKLSSQ 121
            L  + +   +S +
Sbjct: 552 GLGVLSKKFGVSLE 565


>gi|194291379|ref|YP_002007286.1| DNA polymerase iii, epsilon subunit + giy-yig endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
 gi|193225283|emb|CAQ71225.1| DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (modular
           protein) [Cupriavidus taiwanensis LMG 19424]
          Length = 532

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 3   TLFIDFETR---------SPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVH 49
            +F+D ET          + I + + G     E   ++                  D V 
Sbjct: 33  IVFVDLETTGADAQRDRITEIGVVEVGPDGIVEWETLLDPGMSIPPFIQRMTGISDDMVR 92

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNG 104
                + L E+L         VAHN+ F+   LK  F    +       +CT+ L+RS  
Sbjct: 93  GQPTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFR-ADVLCTVRLSRSLF 151

Query: 105 LP---SALKAVGEALKLSSQ 121
                  L A+     L+ +
Sbjct: 152 PSVERHGLDALIARFGLTPK 171


>gi|162452521|ref|YP_001614888.1| hypothetical protein sce4245 [Sorangium cellulosum 'So ce 56']
 gi|161163103|emb|CAN94408.1| rnd [Sorangium cellulosum 'So ce 56']
          Length = 403

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 8/128 (6%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEALENTDVTIVAHN 72
           +D+   G+  Y     +      F +        V    +P   L   L       V H+
Sbjct: 30  VDVEANGLFVYR--PRLCTVQLAFREGDGIAVGIVDALRVPVAPLARLLGAAGPPKVLHD 87

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGE-ALKLSSQKMEEGKELI 130
             F+  +L        P+     T V AR  G   + L A+    L +   K  +  +  
Sbjct: 88  LTFDARMLAEA---GAPLGGAHDTSVAARMLGCAATGLGALLLSELDVKVDKQLQQHDWG 144

Query: 131 ARFCKGET 138
            R  +   
Sbjct: 145 RRPIEDAE 152


>gi|319408646|emb|CBI82301.1| Ribonuclease D [Bartonella schoenbuchensis R1]
          Length = 383

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 18/150 (12%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           L D +   +  Q   + + +  +  V H +  +   +       I  +    T +     
Sbjct: 52  LIDPMVPDIDLQSFFDLMVDEKIVKVFHAARQDIETI-YHLG-GIIPYPLFDTQIAGSIC 109

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
           G   +                   + I + C G   +        +HR        Y   
Sbjct: 110 GFGDS----------------ISYDQIVQRCTGHHLDKSSRFTDWSHRPLSEKQLLYALA 153

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
           DVT  R+++  L+    K +   ++D  + 
Sbjct: 154 DVTYLRDVYLSLKKKLEKNKRTHWMDDELE 183


>gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
 gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
          Length = 1450

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
           +VL+  LE + D  +VAHN+ F+   L    A + +    +  I TL LAR         
Sbjct: 492 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYPQFKRF 551

Query: 108 ALKAVGEALKLSSQ 121
            L  + +   +S +
Sbjct: 552 GLGVLSKKFGVSLE 565


>gi|239909232|ref|YP_002955974.1| putative helicase [Desulfovibrio magneticus RS-1]
 gi|239799099|dbj|BAH78088.1| putative helicase [Desulfovibrio magneticus RS-1]
          Length = 995

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 58/173 (33%), Gaps = 33/173 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGF--DDHPVELWDCVHDPVMPQVLKEALEN 63
           +D ETR               +   +  +     D    +         +P  L EAL  
Sbjct: 824 LDVETR-----RAAADVGGWGNAHKMGVSVAVLYDSGLDDCI-TYAQEELPA-LYEALAR 876

Query: 64  TDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEALKLS 119
            D  IV  N   F+  VL     LD      +   +L R     G   +L  + +A  L 
Sbjct: 877 LD-LIVGFNILRFDYKVLAGASPLDHRKLPTLD--ILERVHARLGYRLSLDGLAKA-TLG 932

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           +QK   G E +A + +G                       YCK DV VTR+++
Sbjct: 933 TQKSASGLEALAWWKEGR----------------IDEIAAYCKKDVLVTRDLY 969


>gi|256084395|ref|XP_002578415.1| DNA polymerase gamma [Schistosoma mansoni]
 gi|238663787|emb|CAZ34653.1| DNA polymerase gamma, putative [Schistosoma mansoni]
          Length = 870

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 40/373 (10%), Positives = 97/373 (26%), Gaps = 74/373 (19%)

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITH---------------- 345
            R+  T     + R         P   LP+   + +  +    +                
Sbjct: 470 DRVHATFWQSYSKRIKSQMAIWLPHDQLPKNVLNDQSYNCKANYGAILPQVITCGTVSRR 529

Query: 346 --LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE 403
              P  +T+       +   +++ V +  G   V AD+   E   +A + G+        
Sbjct: 530 AVEPLWLTASNADENRLGSEIKAMVQSPPGYVFVGADVDSQEM-WIAALIGDAGVGFQGS 588

Query: 404 TGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFA 463
           T          +            +          +G +         +   G  +   +
Sbjct: 589 TPYGWMTLQGNKLDGTDLHTKIAKE----------MGIKRSESKVLNYSRLYGSGIEFAS 638

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
           HL+              FC    +     A +   I      +  ++             
Sbjct: 639 HLL------------AKFCNITVKQASLKAKQLFQITKGRRTIVDSFPSD---------- 676

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                  T +      +     +  +    +     L     R+L  + V ++       
Sbjct: 677 -DGTSISTSKWQGGSESAVFNQLESIARSPEPRTPFLNAQLTRALNPKLVKDD------- 728

Query: 584 TRQLTREYTYGGKLTENIVQAVSRD------ILAEGMMNATKAGYDIVLTVHDEIVCETP 637
                    +       +VQ+ + D      +L   ++N  K    + +++HDE+    P
Sbjct: 729 ---------FLPSRVNWVVQSSAVDYLHCMLVLMRWLINKFKIPARLCISIHDELRYICP 779

Query: 638 DTDEFNASMLYHL 650
            +  +  ++   +
Sbjct: 780 KSHIYQVALALQI 792


>gi|218672255|ref|ZP_03521924.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli GR56]
          Length = 197

 Score = 45.5 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 25/140 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI---------------LFAFGFDD-HPVE 43
           M T+ IDFET +    + C +   + E+  V                          P +
Sbjct: 1   MKTIAIDFETANEQRGSACSVGLAWIEEGRVTRVEERLIRPRDMRFSGMNIAIHGIRPED 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLA 100
           + D    P +     +       T++AHN+ F+ +V +A  +L     P   ++C+L +A
Sbjct: 61  VEDAPEFPEVMDEFHDDFR--GATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMA 118

Query: 101 RSNGLP---SALKAVGEALK 117
           +          L  + E L 
Sbjct: 119 QRIWPHFLSHRLNLIAEHLG 138


>gi|194015490|ref|ZP_03054106.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061]
 gi|194012894|gb|EDW22460.1| DNA polymerase III PolC-type (PolIII) [Bacillus pumilus ATCC 7061]
          Length = 240

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 41/151 (27%)

Query: 3   TLFIDFETRSPI----DLTKCGICKYAEDVCVILFAFGFDDHPV----ELWDCVHDPVMP 54
            + +D ET         + + G  K      V  F        V     +        +P
Sbjct: 6   YVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREF------EEVSRFHTMVALEEGRDLP 59

Query: 55  QVL-------KEALENT---------------DVTIVAHNSYFERTVLKACFNLDIPIHR 92
           + +       +E LE+                D  +VA N+ F+ + +      DI   R
Sbjct: 60  EFITNLTGITEEDLEDAPEEWDALDELQNFIGDAIVVAQNAPFDLSFISR---GDIEPER 116

Query: 93  WICTLVLARSNGL--PSALKAVGEALKLSSQ 121
           + CT  +AR       ++LK V + + +S  
Sbjct: 117 FYCTRAMARFVEPELSASLKDVTKRIGISLD 147


>gi|317503610|ref|ZP_07961630.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
 gi|315665271|gb|EFV04918.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
           DSM 15606]
          Length = 284

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 23/135 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVIL---FAF--------GFDDHPVELWDCVHDPVMP 54
           ID ET +P   + C +     +  VI+   ++            +  V           P
Sbjct: 9   IDIETMTPERTSACALGLVRVENDVIVQKFYSLIKPIPDDRTVTNTHVHGITPEMVENAP 68

Query: 55  --QVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNGLPS 107
             Q L   +E+  +   + AHN+ F+  VLK     + + IPI   + T  L        
Sbjct: 69  TFQDLWPTIEHYISGQVLAAHNTSFDLDVLKKVSTHYGITIPITGVVDTFSLTHL----- 123

Query: 108 ALKAVGEALKLSSQK 122
           +L    + L +   K
Sbjct: 124 SLDETCKVLHVDLGK 138


>gi|297606613|ref|NP_001058743.2| Os07g0112400 [Oryza sativa Japonica Group]
 gi|255677453|dbj|BAF20657.2| Os07g0112400 [Oryza sativa Japonica Group]
          Length = 768

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 21/137 (15%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           ++   H   +P  L+  L +  +T V   +  +R +L A ++L           V +   
Sbjct: 99  VFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLH----------VASA-- 146

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR-LFGEYCK 162
                L+AV      S + M +              +         H         EY  
Sbjct: 147 ---RELRAVAAMGNASMEAMAD-----RFLGYPGIAKPTNVSMSAWHAPYLSIEQVEYAC 198

Query: 163 GDVTVTREIFKRLEPLS 179
            D  +   +   L P  
Sbjct: 199 VDAYLAFRLAVHLCPAP 215


>gi|222636324|gb|EEE66456.1| hypothetical protein OsJ_22851 [Oryza sativa Japonica Group]
          Length = 449

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 21/137 (15%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           ++   H   +P  L+  L +  +T V   +  +R +L A ++L           V +   
Sbjct: 99  VFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLH----------VASA-- 146

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR-LFGEYCK 162
                L+AV      S + M +              +         H         EY  
Sbjct: 147 ---RELRAVAAMGNASMEAMAD-----RFLGYPGIAKPTNVSMSAWHAPYLSIEQVEYAC 198

Query: 163 GDVTVTREIFKRLEPLS 179
            D  +   +   L P  
Sbjct: 199 VDAYLAFRLAVHLCPAP 215


>gi|125557004|gb|EAZ02540.1| hypothetical protein OsI_24650 [Oryza sativa Indica Group]
          Length = 496

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 21/137 (15%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           ++   H   +P  L+  L +  +T V   +  +R +L A ++L           V +   
Sbjct: 99  VFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLH----------VASA-- 146

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR-LFGEYCK 162
                L+AV      S + M +              +         H         EY  
Sbjct: 147 ---RELRAVAAMGNASMEAMAD-----RFLGYPGIAKPTNVSMSAWHAPYLSIEQVEYAC 198

Query: 163 GDVTVTREIFKRLEPLS 179
            D  +   +   L P  
Sbjct: 199 VDAYLAFRLAVHLCPAP 215


>gi|22831296|dbj|BAC16150.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|24414042|dbj|BAC22291.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 752

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 21/137 (15%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           ++   H   +P  L+  L +  +T V   +  +R +L A ++L           V +   
Sbjct: 99  VFHLAHADAIPAALRRFLADPRITFVGSGASNDRRMLSAYYDLH----------VASA-- 146

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR-LFGEYCK 162
                L+AV      S + M +              +         H         EY  
Sbjct: 147 ---RELRAVAAMGNASMEAMAD-----RFLGYPGIAKPTNVSMSAWHAPYLSIEQVEYAC 198

Query: 163 GDVTVTREIFKRLEPLS 179
            D  +   +   L P  
Sbjct: 199 VDAYLAFRLAVHLCPAP 215


>gi|332667981|ref|YP_004450769.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100]
 gi|332336795|gb|AEE53896.1| 3'-5' exonuclease [Haliscomenobacter hydrossis DSM 1100]
          Length = 395

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 33/230 (14%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            + L         + L D      +     E +EN ++  V H    +  +L    +   
Sbjct: 41  RLCLIQVATRHG-LFLIDPFPLKNL-DPFLEMIENPNIVKVTHAGENDYRLL--YASFGT 96

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                  T + A           +G    L+ +K+ E +  I    K  T      R   
Sbjct: 97  IPKNTFDTQIAA---------GFLGYRYPLAFKKLVETELKIN-MNKSFTVADWEARPFN 146

Query: 149 NHREAWRLFGEYCKGDVTVTREIFK------RLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            ++        Y   D+    +++K        +      +E + + +  +         
Sbjct: 147 QNQLK------YAIQDIEPLYDLWKMQEADLLRKKRLHWAEEEFKVLERESYYAK----- 195

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
                 + ++ +  K   + E L    +   R           E  L  +
Sbjct: 196 --EPHYEALNSDLMKSLNKRERLFLLRLFEWRRNTAEDKNYSKEMVLPSK 243


>gi|330469366|ref|YP_004407109.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
 gi|328812337|gb|AEB46509.1| hypothetical protein VAB18032_27181 [Verrucosispora maris
           AB-18-032]
          Length = 584

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 28/140 (20%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH--------------PVELW 45
           + +D ET         +T+ G  K      + + A   +                   L 
Sbjct: 33  VVVDLETTGGAPDGGGITEIGAVKVRGGEELGVLATLVNPGVPIPPFITVLTGITEAMLL 92

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLAR- 101
                  +     E + +    +VAHN+ ++   LKA         P  R + T  LAR 
Sbjct: 93  PAPSIEQVLPSFLEFVSDA--VLVAHNAPYDVGFLKAACARHGYRWPNPRVLDTAALARR 150

Query: 102 -SNG---LPSALKAVGEALK 117
                      L  +    +
Sbjct: 151 VLLRDEVPNRKLGTLAAYFR 170


>gi|262212309|gb|ACY35771.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  G+ +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGEGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|269126003|ref|YP_003299373.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
 gi|268310961|gb|ACY97335.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
          Length = 437

 Score = 45.5 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 29/181 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           +D  +    +Y +     L            +            L  AL + ++  V H 
Sbjct: 72  VDAERASGYRYGQRAY--LIQLRRQGAGTALIDPIACPD--LSGLDAALADAEM--VLHA 125

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L     + +   R   T +  R  G     L ++ E   +    +E+G   + 
Sbjct: 126 ANQDLPCLAE---VGLRPRRLFDTELAGRLLGHPKVGLGSMVE--NVLGFVLEKGHSAVD 180

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              +                E W     Y   DV +  E+   L     +  +L +  + 
Sbjct: 181 WSTRPL-------------PEDW---LRYAALDVELLIELRDALHAELERAGKLQWALEE 224

Query: 192 I 192
            
Sbjct: 225 F 225


>gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
 gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
          Length = 1144

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 72/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 127 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 185

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 186 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 243

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     N   H   
Sbjct: 244 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSL 303

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 304 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 363

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 364 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 411


>gi|171315543|ref|ZP_02904779.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171099380|gb|EDT44118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 375

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 22/136 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWDCV-------HDPVMPQ 55
           +F+D ET                ++  +  + +    +P +             D ++  
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTTLVNPGQSIPPFIQQLTGISDEMVRD 75

Query: 56  V-----LKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL 105
                 L   L         VAHN+ F+R  L+A F    +       +CT+ L+R+   
Sbjct: 76  APSFASLAPTLFERLDGKLFVAHNASFDRGFLRAEFDRAGIAFNP-DVLCTVRLSRALFP 134

Query: 106 ---PSALKAVGEALKL 118
                 L A+ E   L
Sbjct: 135 REARHGLDALIERHGL 150


>gi|170760682|ref|YP_001787078.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169407671|gb|ACA56082.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 195

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 25/122 (20%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVILFA----FGFD--DHPVELWDCVH 49
           M  +FID ET          LT C      +    + FA    F  D  +   E      
Sbjct: 1   MKKIFIDTETTGLEPGEIIQLTYCVCDINFKGEEKVSFAKNFFFDVDYIEESAESIHGFS 60

Query: 50  DPVMP-----QVLKEALEN-----TDVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
              +      +  K+          D   +AHN  F+R           +++     + C
Sbjct: 61  VEKLKILSKGKKFKDLASEISSDLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPKEFFC 120

Query: 96  TL 97
           T+
Sbjct: 121 TM 122


>gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
 gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
          Length = 1468

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 40/143 (27%), Gaps = 36/143 (25%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHD----------------- 50
           T    D+   G+   A D  + L A    D  V        +                  
Sbjct: 452 TYVVFDVETTGLST-AYDTIIELAAVKIKDGHVIDKYESFANPHHPLSATTIELTGITDD 510

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
                     + +     + +    +VAHN+ F+   L      F L+   H  I TL L
Sbjct: 511 MVRHAPEVEQVIKEFHAFIGDG--IVVAHNASFDIGFLYTGYKKFGLEGTTHPVIDTLEL 568

Query: 100 ARSNGLP---SALKAVGEALKLS 119
           AR          L  + +   + 
Sbjct: 569 ARLLYPTMKNHRLNTLCKKFNIE 591


>gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71898480|ref|ZP_00680652.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12]
 gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Dixon]
 gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 239

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 33/149 (22%)

Query: 2   ATLFIDFETRSP-----IDLTKCGICKYAEDVCVIL----------FAFGFDDHPV---- 42
             + +D ET          + + G  +   D  +             +F      V    
Sbjct: 6   RQIVLDTETTGLEWSKGNRIVEIGAVELL-DRRLSGDKFHRYLKPDVSFESGAQEVTGLT 64

Query: 43  --ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRW 93
              L D     ++       +      ++ HN+ F+   L          +         
Sbjct: 65  MEFLADKPEFSMIADEFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKITDRASV 122

Query: 94  ICTLVLA--RSNGLPSALKAVGEALKLSS 120
           + TLV+A  R  G  ++L A+ + L + +
Sbjct: 123 LDTLVMARERYPGQRNSLDALCKRLGVDN 151


>gi|311279296|ref|YP_003941527.1| ribonuclease D [Enterobacter cloacae SCF1]
 gi|308748491|gb|ADO48243.1| ribonuclease D [Enterobacter cloacae SCF1]
          Length = 386

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 50/202 (24%), Gaps = 44/202 (21%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-- 56
           + +D E     T                   + L    +D   V L D +    +     
Sbjct: 34  IALDTEFVRTRTYY---------------PQLGLIQM-YDGDSVVLIDPLS---ITDWTP 74

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            ++ L +  VT   H    +  V    F   +     I T +LA   G P +        
Sbjct: 75  FRDLLLDGAVTKYLHAGSEDLEVFLNTFG--VLPEPLIDTQILAAFCGRPMSWGFAAMVE 132

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           + +   +++ +       +  T                    +Y   DV     I  +L 
Sbjct: 133 EYTGIALDKSESRTDWLARPLT----------------ERQCDYAAADVWYLLPIAHKLM 176

Query: 177 PLSSKEQELWYLDQTINDRGYC 198
             +     L             
Sbjct: 177 AETEASGWLPAALDECRLMQQR 198


>gi|238750479|ref|ZP_04611980.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380]
 gi|238711410|gb|EEQ03627.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380]
          Length = 259

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 46/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 12  RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVINRRLTGRNFHVYVKPDRLIDP 65

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDI 88
                  + D  +    K    +             +V HN+ F+   +         DI
Sbjct: 66  EAYGVHGISDEFLAD--KPTFADITPEFLEFIRGAELVIHNAAFDIGFMDYEFRMLQQDI 123

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P     CT    L+LAR         L A+ +   + + K      L+ 
Sbjct: 124 PKTETFCTITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLD 172


>gi|229472297|gb|ACQ72663.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +                + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDSGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|71901132|ref|ZP_00683238.1| Ribonuclease D [Xylella fastidiosa Ann-1]
 gi|71729096|gb|EAO31221.1| Ribonuclease D [Xylella fastidiosa Ann-1]
          Length = 362

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 45/172 (26%), Gaps = 20/172 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L     +D  + +   V    M   L   L   +V  + H++  +    K      
Sbjct: 36  PELALVQIAIEDEILLVDPLVPG--MTDALGLWLAAPNVIKIMHSASEDLIAFKYACG-- 91

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           +       T +              G    +  QK+   K       KGET      R  
Sbjct: 92  VLPRPLFDTQIG---------AALTGLGGGMGYQKLVT-KVTNVELGKGETRSDWMHRPL 141

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
              +        Y   DV     +   L    ++     +L++        +
Sbjct: 142 TPAQLD------YAANDVRYLFALHDTLTERLAEMSRSAWLEEDCTRLTDNI 187


>gi|229075504|ref|ZP_04208492.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
 gi|228707600|gb|EEL59785.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-18]
          Length = 318

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 61/249 (24%), Gaps = 35/249 (14%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDH---PVELWDCV----- 48
             + IDFET         + +    KY     V  F ++  +     P  +         
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSY-VNPERPIPSRITSLTGITNY 70

Query: 49  --HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA- 100
              D    + +            IVAHN+ F+   LK          P ++ I T+ LA 
Sbjct: 71  RVSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFLAK 130

Query: 101 -RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET---HECLYDRNKPNHREAWR 155
               +     L+ +   L +         + I      +     E    R          
Sbjct: 131 KYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCTSIEEKGKRKVNKAVLDET 190

Query: 156 LFGEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
              E           +  +             YLD         + V         +   
Sbjct: 191 AVYE-----AVKEILVRNKRNVEWLRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTEI 243

Query: 215 RTKLDQELE 223
                +E+ 
Sbjct: 244 VEDDVKEIC 252


>gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
 gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
           Py2]
          Length = 719

 Score = 45.5 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 9/77 (11%)

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNG 104
                  +  A      D  +V HN  F+   L   +    +       + TL+LA    
Sbjct: 593 GKPTLPQVLPAFHAFAADTVLVGHNVAFDMRFLTLKENASGVRFD-QPVLDTLLLAAIVH 651

Query: 105 L---PSALKAVGEALKL 118
                  L+A+   L +
Sbjct: 652 PGEDSHGLEAMAARLGI 668


>gi|323466912|gb|ADX70599.1| DNA polymerase III alpha chain [Lactobacillus helveticus H10]
          Length = 177

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------LFAFGFDDHPVELW---DC 47
           M  + +DFET +    + C +      D  ++           +F   +  V      D 
Sbjct: 1   MNFIAMDFETANHFPESACSLALVMVRDNKIVDRFYTVINPQMSFDARNIQVHQITADDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHN+ F+  V++     +N++ P +  I TL  ++ 
Sbjct: 61  KNAPTMAEVWPKIKGLYQPGMLVAAHNTRFDTNVMRQSLARYNIEEPHYLVIDTLATSKL 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V +AL + 
Sbjct: 121 FEPELPNHKLDTVSDALDVE 140


>gi|300724515|ref|YP_003713838.1| DNA polymerase III subunit epsilon [Xenorhabdus nematophila ATCC
           19061]
 gi|297631055|emb|CBJ91741.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Xenorhabdus nematophila ATCC
           19061]
          Length = 249

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+     +  +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHYEGHN--IIEIG-AVEVINRRLTGRHFHIYIKPERLVDP 60

Query: 41  PVELWDCVHDPVMPQV-LKEALENTDVTI------VAHNSYFERTVLKACF---NLDIPI 90
                  + D  +    L   + +  +        + HN+ F+   +   F   N DIP 
Sbjct: 61  EAFEVHGISDEFLQDKPLFADIADEFIEFIRGAELIIHNATFDIGFMDYEFSKLNRDIPP 120

Query: 91  HRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
               CT    L+LAR         L A+ +   + + K      L+ 
Sbjct: 121 TADFCTITDSLMLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLD 167


>gi|210620723|ref|ZP_03292209.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
 gi|210155224|gb|EEA86230.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
          Length = 179

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 29/144 (20%)

Query: 4   LFIDFETRSPIDLT----KCGICKYAEDVCVILFAFGFDDHPVELWD------------- 46
           + +D ET                    +  ++  ++     P +                
Sbjct: 14  IVVDLETTGLNPFEGNEIIEIGITEIRNGKIVR-SYSRFVKPEQEIPPFITELTGISNEM 72

Query: 47  CVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDI-PIHRWICTLVL-- 99
             ++     +    ++ + +  +  +AHN+ F+   L    N L +  I  +ICTL L  
Sbjct: 73  VANEDTIEQVLPRFRKFIGSNTI--IAHNAKFDIKFLNYYLNKLGLEEIKDYICTLELLK 130

Query: 100 --ARSNGLPSALKAVGEALKLSSQ 121
             +   G    L    E   + ++
Sbjct: 131 KVSSYGGKNKKLATACEYYGIENK 154


>gi|221053221|ref|XP_002257985.1| 3'-5' exonuclease [Plasmodium knowlesi strain H]
 gi|193807817|emb|CAQ38522.1| 3'-5' exonuclease, putative [Plasmodium knowlesi strain H]
          Length = 384

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 12/148 (8%)

Query: 22  CKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVLKEALENTDVTIVAHNSYFERT 78
            K   +  V L      D  V L+D           + LKE LE+  +  + H+   + +
Sbjct: 85  YKIGRNGTVSLVQICAQD--VYLFDVYKCDNTFLFIKCLKELLEDGRIVKITHDCREDCS 142

Query: 79  VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
           +L   +++ +       T V A +       K +    ++S   +     L+    K   
Sbjct: 143 ILFNQYSISLN--NIFDTQV-AYNLLSKETKKDL---YQISYDDLLYKCLLLHNKHKIYF 196

Query: 139 HECLYDRNKPNHREAW-RLFGEYCKGDV 165
           H+ +    K   +    +    Y   DV
Sbjct: 197 HKMISLDQKIYLKRPIGKELIHYAIQDV 224


>gi|229104149|ref|ZP_04234821.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
 gi|228679166|gb|EEL33371.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-28]
          Length = 315

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 61/249 (24%), Gaps = 35/249 (14%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDH---PVELWDCV----- 48
             + IDFET         + +    KY     V  F ++  +     P  +         
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSY-VNPERPIPSRITSLTGITNY 67

Query: 49  --HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA- 100
              D    + +            IVAHN+ F+   LK          P ++ I T+ LA 
Sbjct: 68  RVSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGFPEPKNKVIDTVFLAK 127

Query: 101 -RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET---HECLYDRNKPNHREAWR 155
               +     L+ +   L +         + I      +     E    R          
Sbjct: 128 KYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCTSIEEKGKRKVNKAVLDET 187

Query: 156 LFGEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVE 214
              E           +  +             YLD         + V         +   
Sbjct: 188 AVYE-----AVKEILVRNKRNVEWLRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTEI 240

Query: 215 RTKLDQELE 223
                +E+ 
Sbjct: 241 VEDDVKEIC 249


>gi|261380159|ref|ZP_05984732.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
 gi|284796997|gb|EFC52344.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
          Length = 245

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 30/176 (17%)

Query: 2   ATLFIDFETRSPID------LTKCGICKYAE---DVCVILF----------AFGFDDHPV 42
             + +D ET           +   G+        D  + L+          A       +
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPERDMPEEAAKVHGLTI 63

Query: 43  ELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFN---LDIPIHRWI 94
           E+ +  + P   QV K+   +      ++ HN+ F+   L           ++    +  
Sbjct: 64  EVLEAKNAPPFAQVGKQI-ADFIRGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCKVT 122

Query: 95  CTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            TL +AR       ++L A+     +   K      LI     GE +  +  +   
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQFD 178


>gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 515

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 44/174 (25%), Gaps = 41/174 (23%)

Query: 1   MA-----TLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHPVELWDCVHDPVMP 54
           M       + +D E              Y      V L           +        M 
Sbjct: 236 MKCRLAGEIAVDLE-----------NHNYRSFQGFVCLMQVSTRSEDFIVDALALRSHMG 284

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT-LVLARSNGLPS-ALKAV 112
             LK+   + +V  V H +  +   L+  F + +       T    AR   L    L  +
Sbjct: 285 PSLKDLFADANVKKVMHGADRDIEWLQRDFGIYV--CNMFDTGQQAARVLQLEGFGLAFL 342

Query: 113 -GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
               LK++  K  +  +                R  P          +Y + D 
Sbjct: 343 MQRFLKINPDKRYQLADW-------------RIRPLP------AEMIKYAREDT 377


>gi|15677367|ref|NP_274522.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|7226758|gb|AAF41870.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
 gi|261392239|emb|CAX49759.1| DNA polymerase III epsilon subunit [Neisseria meningitidis 8013]
 gi|308389659|gb|ADO31979.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha710]
 gi|316986028|gb|EFV64965.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
 gi|325130586|gb|EGC53333.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           OX99.30304]
 gi|325136592|gb|EGC59193.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579]
 gi|325140658|gb|EGC63175.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385]
 gi|325199883|gb|ADY95338.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
 gi|325201794|gb|ADY97248.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240149]
 gi|325208453|gb|ADZ03905.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 244

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 64  QVLEGK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 P 148
            
Sbjct: 178 D 178


>gi|107022085|ref|YP_620412.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116689029|ref|YP_834652.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|170732318|ref|YP_001764265.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
 gi|254246035|ref|ZP_04939356.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|105892274|gb|ABF75439.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647118|gb|ABK07759.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           HI2424]
 gi|124870811|gb|EAY62527.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           PC184]
 gi|169815560|gb|ACA90143.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 375

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 34/142 (23%)

Query: 4   LFIDFETR--SPID--LTKCGICKYAEDVCVILFAFGFDD---HPVELWD---------- 46
           +F+D ET   S  D  +T+ G+        +            +P +             
Sbjct: 16  VFVDLETTGGSLADHRITEIGVV------EIGPLGVSTWTSLVNPGQAIPPFIQQLTGIS 69

Query: 47  --CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
              V D      L  AL         VAHN+ F+R  L+A F    L       +CT+ L
Sbjct: 70  DAMVRDAPTFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNP-DVLCTVRL 128

Query: 100 ARSNGL---PSALKAVGEALKL 118
           +R+         L A+ E   L
Sbjct: 129 SRALFPRESRHGLDALIERHGL 150


>gi|161612434|ref|YP_001586399.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161361798|gb|ABX65566.1| hypothetical protein SPAB_00123 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 752

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 120 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 178

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 179 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 237

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 238 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 287

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 288 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 334


>gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
 gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
          Length = 1446

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 45/157 (28%)

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARS 102
           H     + +    +    D  +VAHN+ F+   L        N+    +  I TL L+R 
Sbjct: 486 HGSKSEEEVLTLFKEFAGDHILVAHNASFDMGFLNTSNAKH-NIPDATNPVIDTLELSRF 544

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    L  + +   ++ ++                                     
Sbjct: 545 LHPQYKSHRLNTLAKKYGINLEQHHR---------------------------------- 570

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
               D   T ++       + +E E++Y DQ     G
Sbjct: 571 -AIFDSETTGQLCWLFLKEAKEEHEMFYHDQLNEHIG 606


>gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium
           cf. saccharolyticum K10]
          Length = 1037

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 29/141 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYA---EDVCVI-LFAFGFDDHPVELWDCVHD--------- 50
           +  D ET     L    I   A   E+  ++  F+   +           +         
Sbjct: 198 VVFDIETTGFSPLKNRIIEIGAVKVENGKIVDRFSTFVNPE----VPIPFEIEKLTSISD 253

Query: 51  ------PVMPQVLKEALE-NTDVTIVAHNSYFERTVLKACFNLDIPIHR--WICTLVLAR 101
                 P + +VL + LE  +D  +VAHN+ F+ + ++    +         + T+ +AR
Sbjct: 254 NMVLGAPKIEEVLPKFLEFCSDAVMVAHNASFDMSFIRHNAMIQGKSFEPTVLDTVSMAR 313

Query: 102 SNGLPSA---LKAVGEALKLS 119
                     L  V + L++S
Sbjct: 314 FLLPNLNRFKLDTVAKELRIS 334


>gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 921

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 33/140 (23%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFA-FGFDDHP---VELWDCVHDPVMPQVLKEA--LEN 63
           T   +DL   G+   A+   ++       +D     V          +P  +K    L++
Sbjct: 4   TFVVLDLETTGLDPQAD--EIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLDD 61

Query: 64  TDV--------------------TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
            D+                     +V H+ +F+   L+          +   T+ LAR  
Sbjct: 62  ADLAERPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAGY--RATQAYDTVDLARLV 119

Query: 104 ---GLPSALKAVGEALKLSS 120
                   L+ +   L L  
Sbjct: 120 LPGLPSYRLELLCAHLDLPE 139


>gi|66732780|gb|AAY53371.1| gp68 [Listeria phage P100]
          Length = 278

 Score = 45.5 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 17/80 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------VM 53
            +  D ET + +     G          ++ +  + +         H            +
Sbjct: 207 VIAWDLETNTLLP-EMLGAKP-------LVMSVSWKEGQGVTIPLEHRESHWEAYELEEI 258

Query: 54  PQVLKEALENTDVTIVAHNS 73
              +KE + + ++  V HN 
Sbjct: 259 YNYIKEFVADKNIVKVGHNI 278


>gi|330752241|emb|CBL87198.1| conserved hypothetical protein [uncultured Sphingobacteria
           bacterium]
 gi|330752258|emb|CBL87214.1| conserved hypothetical protein [uncultured Sphingobacteria
           bacterium]
          Length = 244

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 50/183 (27%), Gaps = 54/183 (29%)

Query: 21  ICKYAEDVCVILFAF---GFDDHPVEL-WDCVHDPVMPQVLKEA--LEN------TDVTI 68
              YAE   +I  +     +D+  + L           ++LKE   L N          +
Sbjct: 60  AAIYAEFNKIICISVGYLAYDEDEIVLKVKSYFGDNEKEILKEFSSLLNVHYNNLKKYYL 119

Query: 69  VAHNSY-FERTVLKACFNLD---------------IPIHRWICTLVL-------ARSNGL 105
             HN   F+  V+     +                  +   I TL +       +     
Sbjct: 120 CGHNIKEFDCPVICRRMLIHDLELPKLLNLSRKKSWQVRHLIDTLEMWKFGDYKSYI--- 176

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
             +L  +   L +SS K      L+++                           YC+ DV
Sbjct: 177 --SLDLLSAVLNISSPKTNLVGSLVSK--------------VYWEENDIERIKLYCEQDV 220

Query: 166 TVT 168
             T
Sbjct: 221 VTT 223


>gi|304387081|ref|ZP_07369332.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338830|gb|EFM04933.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           meningitidis ATCC 13091]
 gi|325132669|gb|EGC55354.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190]
 gi|325138557|gb|EGC61120.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           ES14902]
 gi|325204491|gb|ADY99944.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240355]
          Length = 244

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 64  QVLEGK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 P 148
            
Sbjct: 178 D 178


>gi|281424653|ref|ZP_06255566.1| exonuclease [Prevotella oris F0302]
 gi|281401241|gb|EFB32072.1| exonuclease [Prevotella oris F0302]
          Length = 162

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 27/143 (18%)

Query: 1   MATLF-IDFETRSPIDLTKCGIC-KYAEDVCV--ILFAFGFDDHPVELW----------- 45
           M     IDFET +    + C +      D  +    ++      P               
Sbjct: 1   MKDFAAIDFETANNERTSVCSVGLVVIRDGEIADRFYSL-IHPEPDYYTYWNTRVHGLTQ 59

Query: 46  -DCVHDPVMPQVLKE---ALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
            D  H P+ P+V ++    + +  + +VAHN  F+ + LK    C+ +D P + + CTL 
Sbjct: 60  ADTNHAPIFPEVWRKVESLIVD--LPLVAHNKAFDESCLKAVFRCYQMDYPDYSFYCTLA 117

Query: 99  LARSNGL--PSALKAVGEALKLS 119
            +R         L  +       
Sbjct: 118 QSRRVWPQGHHNLNIIAARCGYD 140


>gi|262212281|gb|ACY35757.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLEPRCLGHYL-------SRYDGSKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
 gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
           574]
          Length = 1421

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 28/142 (19%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDDHPVE--------------L 44
            + +DFET        ++ + G  K+   + V  F                        +
Sbjct: 409 YVVLDFETTGFSPQTDEIIEIGAVKFINGMEVDRFGTLVKPDKEIPFEVSKLTGITLDMV 468

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVLA 100
            D          L+E + +    +VAHN+ F+ + LK        +++  ++ + TL  A
Sbjct: 469 KDAPDARQALAALREFIGDA--VLVAHNAAFDLSFLKVGFRKYLQVEV-TNQVVDTLGTA 525

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R          L  + +  K+ 
Sbjct: 526 RVLLPHLKNHKLDTLVKEFKIE 547


>gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
           29176]
 gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
           29176]
          Length = 1517

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 76/279 (27%), Gaps = 35/279 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE---DVCVI-LFAFGFDDHPVELWDCVHDPVMPQVLK 58
            +  D ET     +    I   A    +  ++  F+   +      ++  +   +   + 
Sbjct: 481 YIVFDIETTGFSAIRDKIIEIGAVKVVNGEIVDRFSTFVNPQRPIPFEITNLTSITDEM- 539

Query: 59  EALENTDVT--------------IVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
             LE   +               +VAHN+ F+   ++       ++     ++ T+ +AR
Sbjct: 540 -VLEADPIENVLPQFLEFVGDGVLVAHNASFDVGFIEQNCRYQEIEYRFT-YVDTVAMAR 597

Query: 102 SNGLPSA---LKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                 +   L  V + L +S         +  A          +  ++     +    F
Sbjct: 598 VLLPTLSKYKLNLVAKTLGISLENHHRAVDDAGATAEIFVKFVEMLKKDHITDLKGINRF 657

Query: 158 GEYCKGDVT--VTREIFKRLEPLSSKEQELWYL---DQTINDRGYCVDVALAHTLNQIVD 212
           GE     +    T  I    +    +      +     T   R   +  +L +   + + 
Sbjct: 658 GERNVNAIRKMATHHIIILAKNDIGRYNLYQLISESHMTYYGRRPRIPKSLLNEHREGLV 717

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           +       EL      L              +    +  
Sbjct: 718 IGSACEAGELYK--AILEERPAETIAELADFYDYYEIQP 754


>gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 1454

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLAR 101
             ++P + +V+ + ++   D  +VAHN+ F+   +K       N+D+     I TL +AR
Sbjct: 486 VANEPKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKYLNIDLQ-SSVIDTLQMAR 544

Query: 102 SNGLP---SALKAVGEALKLSSQK 122
                     L  + + L L+ +K
Sbjct: 545 DLFPDLKKYGLGDLNKTLGLALEK 568


>gi|313637226|gb|EFS02740.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
           seeligeri FSL S4-171]
          Length = 921

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 33/144 (22%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLK----------- 58
           +DL   G     ED  +I FA  F +              +  +P  ++           
Sbjct: 2   VDLETTGNQASRED-RIIQFAACFVESGKRLETYATFLNPEKPIPAFIQELTGISPKDVK 60

Query: 59  --EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNG 104
                E+          D   VAHN  F+ T L+       + +   + + T+ LAR   
Sbjct: 61  DAPLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDTVELARIMY 120

Query: 105 L---PSALKAVGEALKLSSQKMEE 125
                  L+ + +   L   K  +
Sbjct: 121 PGIDSYKLQDLSDEFGLGHDKPHQ 144


>gi|262342313|gb|ACY54667.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262342201|gb|ACY54611.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262342189|gb|ACY54605.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262342183|gb|ACY54602.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262342181|gb|ACY54601.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262342179|gb|ACY54600.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262342171|gb|ACY54596.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262342165|gb|ACY54593.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 194

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 16  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 68

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 69  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 110


>gi|262342163|gb|ACY54592.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 194

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 16  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 68

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 69  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 110


>gi|262342153|gb|ACY54587.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212343|gb|ACY35788.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212339|gb|ACY35786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212327|gb|ACY35780.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212315|gb|ACY35774.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212299|gb|ACY35766.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212289|gb|ACY35761.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212305|gb|ACY35769.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212287|gb|ACY35760.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212277|gb|ACY35755.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212273|gb|ACY35753.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212271|gb|ACY35752.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212269|gb|ACY35751.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212265|gb|ACY35749.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212255|gb|ACY35744.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212249|gb|ACY35741.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212247|gb|ACY35740.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212251|gb|ACY35742.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212253|gb|ACY35743.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212257|gb|ACY35745.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212267|gb|ACY35750.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212303|gb|ACY35768.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342155|gb|ACY54588.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342159|gb|ACY54590.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342169|gb|ACY54595.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212245|gb|ACY35739.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212237|gb|ACY35735.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212241|gb|ACY35737.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212279|gb|ACY35756.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212285|gb|ACY35759.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212291|gb|ACY35762.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212295|gb|ACY35764.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212313|gb|ACY35773.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212317|gb|ACY35775.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212319|gb|ACY35776.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212321|gb|ACY35777.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212323|gb|ACY35778.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212329|gb|ACY35781.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212345|gb|ACY35789.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212375|gb|ACY35804.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212407|gb|ACY35820.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342157|gb|ACY54589.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342173|gb|ACY54597.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342175|gb|ACY54598.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342187|gb|ACY54604.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342191|gb|ACY54606.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212215|gb|ACY35724.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212203|gb|ACY35718.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 14  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 66

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 67  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 108


>gi|260366009|ref|ZP_05778494.1| ribonuclease D [Vibrio parahaemolyticus K5030]
 gi|308111259|gb|EFO48799.1| ribonuclease D [Vibrio parahaemolyticus K5030]
          Length = 292

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 19/155 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++  V  V H    +  V +  F         + T
Sbjct: 63  FDGKHLSLIDPTELTDMTS-FIELLKDASVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 119

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G                  +  G   +     G   +    R     R   + 
Sbjct: 120 QLMAAFLG----------------HGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQK 163

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
             +Y   DV     ++++L    ++      + Q 
Sbjct: 164 QLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQE 198


>gi|229472309|gb|ACQ72669.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
 gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
          Length = 443

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 87/319 (27%), Gaps = 76/319 (23%)

Query: 5   FIDFET--RSPIDLTKCGICKYAEDVCVILFAFGFDDH--------------PVELWDCV 48
           F+D ET       ++  G+     D  V    F  D                P  + D  
Sbjct: 7   FVDVETPNYQNNSISSIGVINVDGDGVVTTKYFLVDPEAHFDRFNIELTGITPEMVADQP 66

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWI--CTLVLARSN-- 103
           +   +   ++    N+   +VAHN+ F+ +V+ AC    D+PI      CT  ++R+   
Sbjct: 67  NFKEVWSEIEPYFTNS--LVVAHNAVFDLSVISACLQRYDLPIFPIFYTCTYRISRALKI 124

Query: 104 -GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                 L  +     ++                                           
Sbjct: 125 PSNSYKLNDLSSYYHVTLDNHHN-----------------------------------AL 149

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV---ERTKLD 219
            D     EIF  L    + E    Y+      +G   +      L  ++     +     
Sbjct: 150 ADSKACMEIFYYLLKEPNLETLDQYVKCFEPTKGNKDNKKYLEVLIGLLTGIGFDNYLNK 209

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           +E+  L   L  +   L      +  E             + VL +      Q + + N 
Sbjct: 210 KEISFLNNWL--TKNQLPYEYANIVKEL------------KAVLKNEYITHYQYLHILNE 255

Query: 280 RMRASRSAVLKLNTLVEAM 298
                      + +L E M
Sbjct: 256 LQYMKSIKAKNIRSLYEFM 274


>gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
 gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella
           australiensis 50-1 BON]
          Length = 1427

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 31/144 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVIL--------FAFGFDDHPVELWD--------- 46
           + +D ET         G  K  E   V +        F+  F +  V +           
Sbjct: 416 VVLDIETTGLN----AGTDKIIEIGAVRIKDGKYKDEFS-SFINPHVPIPPSIVNLTGIT 470

Query: 47  ---CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKACF-NLDIPI-HRWICTLVLA 100
                + P    VL+  +E   D  +VAHN+ F+   ++      ++   +  + TL LA
Sbjct: 471 DDMVSNAPDEGDVLQRFMEFAGDAVLVAHNAQFDMGFIRQHGQKYNLKFANPVLDTLTLA 530

Query: 101 RSNG---LPSALKAVGEALKLSSQ 121
           R          L  +   L +   
Sbjct: 531 RQLFKGLKHYKLDTLAHHLHIDMD 554


>gi|332361545|gb|EGJ39349.1| DNA polymerase III [Streptococcus sanguinis SK1056]
          Length = 814

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 74/282 (26%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIALIENGIITKTYETDVNPHEELDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCGLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN----DRGYCVDVALAHTLNQI 210
                Y         E+++ +     KE +  +               +       L  +
Sbjct: 184 ADSIIYESRLAI--EEVYQTMPDQQDKELQSCHCIFLRRSQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER +  +    +   L        + +T L    G  L 
Sbjct: 242 GLEERPEQLKFARFMEEALDQQEPSFLEAQTGLGKTFGYLLP 283


>gi|257430810|ref|ZP_05607192.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257278938|gb|EEV09557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 68-397]
          Length = 905

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 76/585 (12%), Positives = 157/585 (26%), Gaps = 90/585 (15%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------------D 50
           T + +DL   G     +D+  I   F  ++   ++ D  H                   +
Sbjct: 5   TYAVVDLETTGNQLDFDDIIQIGITFVRNN---QIIDTYHSMIRTNLEIPPFIQALTSIE 61

Query: 51  PVMPQV------LKEALENT--DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL-- 97
             M Q       + E + +   D   VAHN  F+   +K  F   N+     + I TL  
Sbjct: 62  ENMLQQAPYFNQVAEEIYDKIKDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 98  -VLARSNGLPSALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLYDRNKP 148
             +A        L  + EA  +                K +I  F K E       +   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLY 181

Query: 149 N---------HREAWRLFGEYCKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRG 196
                     +   + +  +Y    +  + E F           ++     +    +   
Sbjct: 182 YLSKQLKYDLYDIFFEMVRQYDAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYS 241

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-L 254
             VD        Q + +  T LDQ + S    + +S    + L   L  L   +     +
Sbjct: 242 KAVDQLGLTYRPQQLYLAETILDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHV 301

Query: 255 TETTCQRVLSS--NKKLTPQAIQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQ 309
             +T  ++L S   +K  P   +  N ++     +S    ++  L+  +  D      + 
Sbjct: 302 MISTNTKLLQSQLLEKDIPAMNEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVN 361

Query: 310 ----FLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
                L    T   SG      NL    + + +                + ++  +  + 
Sbjct: 362 ILKMQLLIWITETPSG-DIQELNLKGGQKMYFDQKIETYVPARHDVHYYNFIKRNAQNI- 419

Query: 366 SCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT 425
                             I     A +     +   ++  +D  V    R  + A  QVT
Sbjct: 420 -----------------QIGITNHAHLIHSDVENSIYQLFDDCIVDEAHRLPDYALNQVT 462

Query: 426 KDQRAIGKVMELALGYQGGAKAF---QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
            +        +L L  +   +             +        +          +     
Sbjct: 463 NELSYADIKYQLGLIGKNENEKLLKAIDQLEKQRILEKLDIAPIDIFGLKASMNEIHELN 522

Query: 483 RWMQENHPEHAIEDLFIGTACERVKKAW-RQKHSRVSELWNELHQ 526
             +         +         R    +  +    + +L   + +
Sbjct: 523 EQLFSTIFTIINDSDVYDDDIHRFHNVFTFETKDILKDLHAIIDK 567


>gi|149908875|ref|ZP_01897535.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
 gi|149808149|gb|EDM68090.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
          Length = 245

 Score = 45.5 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 46/163 (28%), Gaps = 34/163 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF--GFDDHPVELWDCVHDPVM-PQVLK 58
             +  D ET   +++   G+      + +                     D ++ P+ + 
Sbjct: 14  RVIVFDTETT-GMNMGAGGVHIGHRVIEIGCIELINRRPTGRTYHVYIKPDRLVDPEAIA 72

Query: 59  ------EALENT---------------DVTIVAHNSYFERTVLK---ACFNLDIP----I 90
                 E L++                   +VAHN+ F+   L       N  +P    I
Sbjct: 73  VHGITDEFLQDKPSFATIADEFIAFIVGAELVAHNASFDTNFLDHEFRLLNKGLPATKEI 132

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            +   TL +A+         L  +     + +        L+ 
Sbjct: 133 CKITDTLAIAKKLFPGKRNNLDVLCTRYGIDNSHRTLHGALLD 175


>gi|229472369|gb|ACQ72699.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 190

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 33/141 (23%), Gaps = 8/141 (5%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
           D  R    AS    +V ADLAGIE R+LA          A                +   
Sbjct: 10  DQFRELFQASPSMVMVGADLAGIELRMLAHYL-------ARYDEGRYADILLNGDIHQEN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           A      R   K +  A  Y  G                 T        +  +     E 
Sbjct: 63  ADKIGISRRQVKTVTYAFLYGAGDNKIGLSYDPQLSSKQATAKGEEIRAAYMDAVPGLEK 122

Query: 481 FCRWMQENHPEHAIEDLFIGT 501
               ++             G 
Sbjct: 123 LVTAVKHKAQSSGKIRAIDGR 143


>gi|229472321|gb|ACQ72675.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 14/139 (10%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            R   I   G KLV +DLAGIE RV A   G  ++ +       +D++     +      
Sbjct: 12  CRELFITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI----- 66

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                  R   K +  A  Y           ++    L       K       + DA   
Sbjct: 67  ----GISRRAVKTVTYAFLYGASDVKI---GTSYDSQLTEDQARKKGAEIRRAYLDAIPG 119

Query: 482 CRWMQENHPEHAIEDLFIG 500
              + E     A  D  + 
Sbjct: 120 LERLVEAVKTKAKVDRSLR 138


>gi|254456100|ref|ZP_05069529.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083102|gb|EDZ60528.1| DNA polymerase III, epsilon subunit [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 220

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 39/162 (24%)

Query: 1   MATLFIDFETRS----------------PIDL--TKCGICKY-------AEDV-CVILFA 34
           M  + +D ET                    +L  TK     Y       +E    V  + 
Sbjct: 1   MKEVVLDTETTGISVKEGHRIVEIGCIELDNLIPTKNRFHCYLNPERKVSEKALEVHGYT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI---H 91
             F     +  D          +K      D  ++ HN+ F+   L    ++       +
Sbjct: 61  DEFLSEQKKFSDI--GEQFLAFIK------DKRLIIHNAEFDLGHLNNELSIFGKKKINN 112

Query: 92  RWICTLVLAR--SNGLPSALKAVGEALKLSSQKMEEGKELIA 131
             + TL+LAR    G P +L A+ +  ++ +    +   LI 
Sbjct: 113 EIVDTLILARDKFPGSPVSLDALCKRYRIDNSIRTQHTALID 154


>gi|163754785|ref|ZP_02161907.1| hypothetical protein KAOT1_17858 [Kordia algicida OT-1]
 gi|161325726|gb|EDP97053.1| hypothetical protein KAOT1_17858 [Kordia algicida OT-1]
          Length = 237

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 61/225 (27%), Gaps = 69/225 (30%)

Query: 2   ATLFIDFET------RSPIDLTKCGI----------------------CKYAEDVCVILF 33
             LF+D ET         +D  +  +                        +AE   +I  
Sbjct: 9   NVLFLDIETVPEYPYFDDLDTEEKTLWEQKTKYQRKEEFTPEEFYDRAGIWAEFGKIICI 68

Query: 34  AFGF--DDHPVELWDCV----HDPVMPQVLKEALE----NTDVTIVAHNSY-FERTVLKA 82
           + G+  +   +  +        +  + +  K  LE         + AHN   F+   +  
Sbjct: 69  SVGYFANKGDLRQFRTTSFHGEEEQLLREFKALLETHFNRPHHLLCAHNGKEFDFPYIAR 128

Query: 83  CF---NLDIP-------IHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEG 126
                 + +P          W      T+ L +        +L+ + + L + S K    
Sbjct: 129 RMIINGITLPFKLNLFGKKPWEIAHLDTMELWKFGDYKHYTSLRLMTKVLGIPSPKD--- 185

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                        +    RN             YC+ DV    +I
Sbjct: 186 -----------DIDGSQVRNVFYEEGDIDRIITYCEKDVVAVAQI 219


>gi|28377661|ref|NP_784553.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum WCFS1]
 gi|254555842|ref|YP_003062259.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum JDM1]
 gi|28270494|emb|CAD63396.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum WCFS1]
 gi|254044769|gb|ACT61562.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum JDM1]
          Length = 173

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 13/112 (11%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75
           L K     +  +V +         H  ++ D    P + Q ++   +  D  ++AHN+ F
Sbjct: 33  LIKPESDFFWRNVQIHGI------HEADVADAPKFPDVWQHIEPFFQR-DRLVIAHNAPF 85

Query: 76  ERTVLKA---CFNLDIPIHRWICTLVLA---RSNGLPSALKAVGEALKLSSQ 121
           +  VL+     + +  P +  + T+  +           L  V +AL +  Q
Sbjct: 86  DIGVLRNTLAHYGISAPEYLSMDTVKTSQRFYPELPNHKLDTVCQALDIDLQ 137


>gi|294340001|emb|CAZ88365.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As]
          Length = 239

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 41/161 (25%), Gaps = 36/161 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFDD 39
             + +D ET            +  E   V LF                      A     
Sbjct: 3   RQIVLDTETTGLNP---ASGDRIIEVAGVELFNRRLTGKHYHAYLNPDRASHPDALKVHG 59

Query: 40  -HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL------KACFNLDIPIHR 92
                L D      +   L E + + ++ I  HN+ F+   L               +  
Sbjct: 60  LTEEFLSDKPRFAQIADDLLEFVRDAEIII--HNAPFDCAFLDAELERLNRPAFKQHVPL 117

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              TL +A+         L A+ +   + +        L+ 
Sbjct: 118 VTDTLAMAKLQFPGKFNNLDALCKRFGIDNAHRTLHGALLD 158


>gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
 gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Pseudovibrio sp. JE062]
          Length = 471

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPI--HRWICTLVLARSN---GLPSALKAVGEALKL 118
            D  IVAHN+ F+   L+   ++   +  H  + T++L+           L A+   L +
Sbjct: 358 KDAVIVAHNAPFDMAFLQRYGHMSGHVWDHPILDTVLLSAVVFGAEQEHTLDALCARLDI 417

Query: 119 S 119
            
Sbjct: 418 E 418


>gi|126737494|ref|ZP_01753224.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
 gi|126720887|gb|EBA17591.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. SK209-2-6]
          Length = 465

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN---GLPSALKAVGEALK 117
            D  +VAHN+ F+   L+       +D   H  + T++L+       +P  L A+ + L+
Sbjct: 337 KDSVLVAHNAPFDIAFLRRHAKSSGVDWN-HMVLDTVLLSAVIFGASVPHTLDALCDRLE 395

Query: 118 LS 119
           ++
Sbjct: 396 IN 397


>gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
 gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
           sp. TrichSKD4]
          Length = 470

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 47/148 (31%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDH---PVELWD--CVHDPVMP----- 54
            D ET   +               ++   A    +    P E+ D        +P     
Sbjct: 281 FDTETTGLMPNKD----------EIVQIGAVRVVNGKIVPGEVIDQLVDPGRPIPPASTK 330

Query: 55  ------QVLKEA------------LENTDVTIVAHNSYFERTVLKACF---NLDIPIHRW 93
                 +++K A                 V  VAHN+ F+   L        L+   H  
Sbjct: 331 VHGITDEMVKGAPDAVTSVQQFHTFAKDSVI-VAHNAPFDMAFLHRYGRESGLEWD-HPI 388

Query: 94  ICTLVLARSNGLP---SALKAVGEALKL 118
           + T++L+           L A+ + L +
Sbjct: 389 MDTVLLSAVVYGTTEIHTLDALCDRLGV 416


>gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
 gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
          Length = 328

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 24/135 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHDP------ 51
           +D ET        +    + +      V      L     D  PV +     +       
Sbjct: 26  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSEALEGAPL 85

Query: 52  --VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP 106
              + +     L +    +VAHN+ F+  ++   +     + P+ + +CT+ L++  GLP
Sbjct: 86  FTDIAEEFAARLAD--RVLVAHNAVFDWQMIAREYARARREAPVRQRLCTIALSKELGLP 143

Query: 107 ---SALKAVGEALKL 118
                L+++     +
Sbjct: 144 LPNHKLESLAAHFGV 158


>gi|163803649|ref|ZP_02197513.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
 gi|159172559|gb|EDP57420.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
          Length = 372

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 19/155 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 47  FDGKQLSLIDPTELTDMTS-FVELLQDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G                  +  G   +     G   +    R     R   + 
Sbjct: 104 QLMAAFLG----------------HGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQK 147

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
             +Y   DV     ++++L    ++      + Q 
Sbjct: 148 QLDYAAADVHYLMPLYEKLLDKVNQAGWWEAVQQE 182


>gi|237733311|ref|ZP_04563792.1| 3'-5' exonuclease [Mollicutes bacterium D7]
 gi|229383692|gb|EEO33783.1| 3'-5' exonuclease [Coprobacillus sp. D7]
          Length = 443

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 86/319 (26%), Gaps = 76/319 (23%)

Query: 5   FIDFET--RSPIDLTKCGICKYAEDVCVILFAFGFDDH--------------PVELWDCV 48
           F+D ET       ++  G+     D  V    F  D                P  + D  
Sbjct: 7   FVDVETPNYQNNSISSIGVINVDGDGVVTTKYFLVDPEAHFDRFNIELTGITPEMVADQP 66

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHRWI--CTLVLARSN-- 103
           +   +   ++    N+   +VAHN+ F+  V+ AC    D+PI      CT  ++R+   
Sbjct: 67  NFKEVWSEIEPYFTNS--LVVAHNAVFDLGVISACLQRYDLPIFPIFYTCTYRISRALKI 124

Query: 104 -GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                 L  +     ++                                           
Sbjct: 125 PSNSYKLNDLSSYYHVTLDNHHN-----------------------------------AL 149

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV---ERTKLD 219
            D     EIF  L    + E    Y+      +G   +      L  ++     +     
Sbjct: 150 ADSKACMEIFYYLLKEPNLETLDQYVKCFEPTKGNKDNKKYLEVLIGLLTGIGFDNYLNK 209

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
           +E+  L   L  +   L      +  E             + VL +      Q + + N 
Sbjct: 210 KEISFLNNWL--TKNQLPYEYANIVKEL------------KAVLKNEYITHYQYLHILNE 255

Query: 280 RMRASRSAVLKLNTLVEAM 298
                      + +L E M
Sbjct: 256 LQYMKSIKAKNIRSLYEFM 274


>gi|114776398|ref|ZP_01451443.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
           PV-1]
 gi|114553228|gb|EAU55626.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
           PV-1]
          Length = 310

 Score = 45.5 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 38/122 (31%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVH--------DPVMP 54
           L ID ET               E    + F AF +D     +++ +H           + 
Sbjct: 40  LVIDTETTGLD----TTADTIIE----LGFVAFSYDAGSGRIYEVLHNYDGFEDPGAPLS 91

Query: 55  QVLKEA------------LENTDV--------TIVAHNSYFERTVLKACFNLDIPIHRWI 94
            V+K+             L++ ++         ++AHN+ F+R +L+    L      W 
Sbjct: 92  DVVKQLTGISDAMVAGQRLDDAEIETWLKKADLLIAHNAAFDRPMLERRLPLAAE-KNWA 150

Query: 95  CT 96
           CT
Sbjct: 151 CT 152


>gi|322374613|ref|ZP_08049127.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C300]
 gi|321280113|gb|EFX57152.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C300]
          Length = 829

 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 84/284 (29%), Gaps = 40/284 (14%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51
             + +D E   T S   + + GI    E+  +I   +  D +P E  D            
Sbjct: 7   RYVVVDLEATSTGSKAKIIQVGI-VVIENGEIID-QYATDVNPHEPLDSHIKELTGLTDQ 64

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                     +   + E +++     VAHN  F+  +L         ++   R   T+ L
Sbjct: 65  RLAAAPEFSQVAGKIFELVKDG--IFVAHNVQFDANLLAEFLFFEGYELRTPRV-DTVEL 121

Query: 100 ARSNGL---PSALKAVGEALKLSSQKMEE-------GKELIARFCKGETHECLYDRNKPN 149
           A+          L  + + L +  +             EL+    +              
Sbjct: 122 AQVLYPQFEKYNLGILCQELGIELEHAHTALSDAQATAELLLYMRQKLFELPKGLLESLL 181

Query: 150 HREAWRLFGEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
           +     L+  Y    +V   + +     P   +   L+   ++       +    A  ++
Sbjct: 182 NLADNLLYESYLVIEEVYQQQSL--LSSPDLMELHGLFLKKESKALVPRKLSKDFAKNIS 239

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
            +   ER +  +  E +   L        + +T L    G  L 
Sbjct: 240 LLGLEERPQQLEFAEKIEQLLEEHQTSFIQAQTGLGKTYGYLLP 283


>gi|312871342|ref|ZP_07731439.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 3008A-a]
 gi|312875261|ref|ZP_07735270.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089224|gb|EFQ47659.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 2053A-b]
 gi|311093135|gb|EFQ51482.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Lactobacillus iners LEAF 3008A-a]
          Length = 177

 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 26/181 (14%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVIL---FAFGFDDHPVELW---DC 47
           M    +DFET      S   L    +   K  +    ++     F  ++  +      D 
Sbjct: 1   MNFTAMDFETANRHYDSACSLALVLVRDNKIIDSFYTVINPQMPFDKNNIKIHGITANDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
              P M +V      L    + +VAHN+ F+  V+K     +N+  P +  I TL  +R+
Sbjct: 61  KDAPTMNEVWPKIRLLFQPGMLVVAHNARFDCNVMKKSLKKYNIAEPHYLTIDTLATSRA 120

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    L  V   L +            A        E L  +N+    E  + F +
Sbjct: 121 LMPNLKNYRLDTVSNQLNID-----LWHHHNALSDSEACAEILIKQNQQFGDEQIKNFIK 175

Query: 160 Y 160
           Y
Sbjct: 176 Y 176


>gi|262212325|gb|ACY35779.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDVHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 900

 Score = 45.5 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 54/194 (27%), Gaps = 45/194 (23%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------------D 50
           T + +DL   G     +   +I     F  +  ++ D  H                   +
Sbjct: 5   TYAVVDLETTGNQLDYD--EIIQIGITFVRNQ-QIIDTYHSMIRTDLEIPPFIQALTSIE 61

Query: 51  PVMPQV---LKEALEN-----TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
             M        E  E+      D   VAHN  F+   +K  F   N+     + + TL L
Sbjct: 62  EEMLAQAPYFNEVAEDIYNQIKDCIFVAHNISFDLNFIKNAFDNCNIQFRPKKVMDTLEL 121

Query: 100 ---ARSNGLPSALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLYDRNKP 148
              A        L  + ++  +                K +I  F K E       +   
Sbjct: 122 FKIAFPTDKSYQLSELAQSHNIPLTNAHRADEDATTTAKLMIKAFEKFENLPLDTQKQLY 181

Query: 149 NHREAWRLFGEYCK 162
              +  + +  Y  
Sbjct: 182 YLSKDLK-YDLYNI 194


>gi|312381749|gb|EFR27423.1| hypothetical protein AND_05878 [Anopheles darlingi]
          Length = 1735

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 78/307 (25%), Gaps = 38/307 (12%)

Query: 343  ITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAF 402
                PT +T+     + I   +R+ V A  G ++V AD+   E   +A + G+       
Sbjct: 949  RASEPTWMTASNAQRERIGSELRAMVQAPIGYRIVGADVDSQEL-WIASVLGDAGVASCG 1007

Query: 403  ETGEDLY--------VTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                                   +   A      R   KV+  A  Y  G +  +++   
Sbjct: 1008 ALHGGTPFGWMTLSGTKATRTDMHSVTAAAVGISRDHAKVINYARIYGAGQQFAERLLKQ 1067

Query: 455  TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
                ++      K        +    +    Q                  R+ + +    
Sbjct: 1068 FNPTISQAEARSKATKMFSLTKGRRLYRLREQWIETHPDAPRHCTQYEALRLARLFNHA- 1126

Query: 515  SRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVG 574
                              +      +     +  +      +   L     R+L      
Sbjct: 1127 ----------IDELFYPPQWCGGTESVMFNRLEEIASADRPSTPFLGGRLSRALEPEPTH 1176

Query: 575  NNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNATKAGYDIVLTVHDE 631
            +        TR               +VQ+ + D   ++   M    +      L+ HDE
Sbjct: 1177 SGDVDRFMPTR------------INWVVQSGAVDFLHLMLVCMRWLMEDRVRFCLSFHDE 1224

Query: 632  ---IVCE 635
               +V E
Sbjct: 1225 VRYLVAE 1231



 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 62/234 (26%), Gaps = 51/234 (21%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTL--------VLAR---SNGLPS--------- 107
           ++ HN  ++R  ++  + L+    R++ T+        + +                   
Sbjct: 434 VIGHNVSYDRARVREQYWLEPTALRFLDTMSLHVCVSGITSYQRAMLRSSKASPTNDSGW 493

Query: 108 ----ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
               +L  + +   L       GK L          +   +      R  +     YC  
Sbjct: 494 REQCSLNNLADVYAL-----YCGKRLNK-----SQRDTFVEGTLDEVRANFGNLMSYCAE 543

Query: 164 DVTVTREIFKRLEP--------------LSSKEQELWYLDQTINDRGYCVDV--ALAHTL 207
           DV  T+ +  +L P              +         ++ + N      D+      T 
Sbjct: 544 DVRATKAVLVKLWPLFQERFPHPATLAGMLEMGSAYLPVNASWNRYLTESDLTYDDLDTE 603

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
            + +  +R      L              ++  +   L+     +   + T   
Sbjct: 604 AKQLLTQRADAACALLHNQAYKRDIWL-WDQDWSVQELKLKAARKTKAKPTSDN 656


>gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
          Length = 1450

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
           +VL+  LE +    +VAHN+ F+   L    A + +    +  I TL LAR         
Sbjct: 492 EVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEATNPVIDTLELARYLYPQFKRF 551

Query: 108 ALKAVGEALKLSSQ 121
            L  + +   +S +
Sbjct: 552 GLGVLSKKFGVSLE 565


>gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c]
 gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c]
          Length = 239

 Score = 45.1 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 33/149 (22%)

Query: 2   ATLFIDFETRSP-----IDLTKCGICKYAEDVCVIL----------FAFGFDDHPV---- 42
             + +D ET          + + G  +   D  +             +F      V    
Sbjct: 6   RQIVLDTETTGLEWSKGNRIVEIGAVELL-DRRLSGDKFHRYLKPDVSFESGAQEVTGLT 64

Query: 43  --ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRW 93
              L D     ++       +      ++ HN+ F+   L          +         
Sbjct: 65  MEFLADKPEFSMIADEFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKITDRASV 122

Query: 94  ICTLVLA--RSNGLPSALKAVGEALKLSS 120
           + TLV+A  R  G  ++L A+ + L + +
Sbjct: 123 LDTLVMARERYPGQRNSLDALCKRLGVDN 151


>gi|296420113|ref|XP_002839625.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635808|emb|CAZ83816.1| unnamed protein product [Tuber melanosporum]
          Length = 1038

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 72/270 (26%), Gaps = 41/270 (15%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQV-LKEALE-NTDVTIVAHNSYFERTVLKACFN 85
             ++  A   D     L   +      Q  L    + N    IV HN  F+R  ++  ++
Sbjct: 123 FPIMACAVSKDAWYAWLSPWLLGENKSQRHLIPFGDINKSRVIVGHNVGFDRARVREEYD 182

Query: 86  LDIPIHRWICTLVLARSNGLPSAL------------KAVGEALKLSSQKMEEGKELIARF 133
           L    + ++ T+ L  +     +             +     L +    +   +++    
Sbjct: 183 LVQSRNCFLDTMSLHVAVNGMCSRQRPVWMKHQKKRELRERELWIRRSSINSLRDVAKFH 242

Query: 134 CKGETHECLYDR----NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
           C  E  + +  R    N  +          YC  D   T  +++++ P   +        
Sbjct: 243 CGIELDKEVRGRFGGTNLEDVLANLDELLSYCAQDAIATHLVYRKVLPHFLRVCPHPVSF 302

Query: 190 QTINDRGYCVDV------ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLE------ 237
             +      +              ++        + + L  L    +      +      
Sbjct: 303 AALRHLSSFILPVNRSWDTYVEETDKAYRQASDDVKKRLVELAETALEVKDKPDVYMNDQ 362

Query: 238 ---------KLKTWLFLETG--LHLEDLTE 256
                    +   +L L+ G         +
Sbjct: 363 WLRQLDWSGQEIKFLKLKKGEVEPKPAKQK 392



 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 77/317 (24%), Gaps = 75/317 (23%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   +++       +          +   +++ VIA +G   V AD+   E
Sbjct: 570 PQLIPMGTITRRAVERTWLTASNAK------KHRLGSELKAKVIAPQGYAFVGADVDSQE 623

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   ++        T       R   KV      Y
Sbjct: 624 L-WIASLLGDAQFKIHGGNALGFMTLEGTKANGTDLHSKTANILGISRDNAKVFNYGRIY 682

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G      +       +              + +  +   + +      H   + F+  
Sbjct: 683 GAGVGFASTLLRAFNPAITDAKCAKIAADLYSKTKGHQTLRKSLSPTRFWHGGTESFVFN 742

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
             E+     R +                  +       A  RR++               
Sbjct: 743 TLEKFADQERPRTP----------------VLGAGITEALMRRNLSRNGF---------- 776

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
           LPS                                     +Q+   D   +L   M   +
Sbjct: 777 LPS--------------------------------RINWAIQSSGVDYLHLLIVAMDYLI 804

Query: 616 NATKAGYDIVLTVHDEI 632
                   + +TVHDEI
Sbjct: 805 RKFGLQARLAITVHDEI 821


>gi|170016856|ref|YP_001727775.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20]
 gi|169803713|gb|ACA82331.1| DNA polymerase III, epsilon subunit [Leuconostoc citreum KM20]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 39/151 (25%)

Query: 1   MATLFIDFET-----RSPIDLT-----------------KCGICKYAEDVCVILFAFGFD 38
           M    +DFET      S + +                  K      A +  +        
Sbjct: 1   MNFTALDFETANHEKHSAVSIALAVVRDNQVVDEFYSLIKPETYFSARNTAIHGITAA-- 58

Query: 39  DHPVELWDCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRW 93
                  D    P  P++      L   D  +VAHN+ F+  +LK     +++  P +  
Sbjct: 59  -------DVAQAPKFPEIWDMIAPLFTEDKLVVAHNAAFDNGILKGTLDYYDIAEPHYML 111

Query: 94  ICTLVLARSNGL---PSALKAVGEALKLSSQ 121
           + T+  +R          L  V + L ++  
Sbjct: 112 LDTVRSSRQLFPDFKNHKLNTVAQNLGITLD 142


>gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
 gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium PC4.1]
          Length = 1450

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
           +VL+  LE +    +VAHN+ F+   L    A + +    +  I TL LAR         
Sbjct: 492 EVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEATNPVIDTLELARYLYPQFKRF 551

Query: 108 ALKAVGEALKLSSQ 121
            L  + +   +S +
Sbjct: 552 GLGVLSKKFGVSLE 565


>gi|157145434|ref|YP_001452753.1| ribonuclease D [Citrobacter koseri ATCC BAA-895]
 gi|157082639|gb|ABV12317.1| hypothetical protein CKO_01177 [Citrobacter koseri ATCC BAA-895]
          Length = 371

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 51/178 (28%), Gaps = 40/178 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D  H       L+
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHVALID-PHGITDWSPLR 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AVLRDTAITKFLHAGSEDLEVFLNTFG-ELP-QPLIDTQILAAFCGRPLSWGFAAMVEEF 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +   +++ +       +  T                    EY   DV     I K+L 
Sbjct: 122 TGVALDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITKKLM 163


>gi|169347300|ref|ZP_02866238.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
 gi|169293917|gb|EDS76050.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
          Length = 261

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 69/244 (28%), Gaps = 60/244 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-----------WDCVHD 50
             + +DFET         G+ +Y  D  V+  A    D  V +           W     
Sbjct: 4   KYVVLDFETT--------GVNRYHND-EVVQVAIVNQDDEVLINELCKPKHHFSWPSAQR 54

Query: 51  ---------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                                + E  +N++   V +N  FE+ +LK    +DI  + +  
Sbjct: 55  INGISPLMVKDKLCFESYIDRIIEIFDNSEFI-VCYNIAFEQGMLKNY-GIDISKYVFKD 112

Query: 96  TL-VLARSNGLPS--------ALKAVGEALKLS---SQKMEEGKEL-------IARFCKG 136
            +   A   G           +L    +    +      +E+ K          A     
Sbjct: 113 PMKDFAYIYGERGYHGGYKWQSLSTCAKYFGYNFAAHDALEDVKATRYCFEQIEAYKNGK 172

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGD-VTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
                L +          +   +Y + D V V   I+   + + +  +E      +I   
Sbjct: 173 IEKSYLNNWKLLFEPLVIKQGKKYYEDDLVDV---IYYGDKQIVASVKEDITHMISIEFN 229

Query: 196 GYCV 199
              +
Sbjct: 230 KSSI 233


>gi|170575788|ref|XP_001893385.1| 3'-5' exonuclease family protein [Brugia malayi]
 gi|158600662|gb|EDP37784.1| 3'-5' exonuclease family protein [Brugia malayi]
          Length = 847

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 19/137 (13%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            + D         +L E   + ++  V H +  +   L+  F + +       T    R 
Sbjct: 316 YIIDPFPLWNDMHILNEPFTDPNILKVFHGADSDIVWLQRDFGIYV--VNMFDTYKAMRV 373

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                              K      L+   C     +     +             Y +
Sbjct: 374 LNFS---------------KFSYQH-LVQTCCNHTLDKKFQKADWRLRPLTIAH-KTYAR 416

Query: 163 GDVTVTREIFKRLEPLS 179
            D       + +L    
Sbjct: 417 SDTHYLLHCYDQLRKRL 433


>gi|254514489|ref|ZP_05126550.1| ribonuclease D [gamma proteobacterium NOR5-3]
 gi|219676732|gb|EED33097.1| ribonuclease D [gamma proteobacterium NOR5-3]
          Length = 372

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 67/252 (26%), Gaps = 44/252 (17%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L     DD    L D +        L
Sbjct: 24  EIAVDTEFMRRNTYY---------------PHIALLQLCSDD-HAWLIDPLKV-TDLDGL 66

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           +  + +T    V H+   +  V +    +       I T       G    L        
Sbjct: 67  RALMTDTGCWKVLHSCSEDLEVFRHWLGVV--PSPLIDTQRATALLGKGFGLG------- 117

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                    + LI      E  +     +      +      Y   DV      +K L+ 
Sbjct: 118 --------YRALIELLLGVELDKGETRSDWLKRPLS-DSQCHYAALDVLKLVPAWKILKD 168

Query: 178 LSSKEQELWYLDQTINDRGYCV---DVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
           L+  +  + ++     +    +   D  + +   +       +    L  L     + +R
Sbjct: 169 LALSQGRMEWILDEGEEAIRLLNERDRDI-YRRVKSASRLSPRQLDALRRLCEWREALAR 227

Query: 235 CLEKLKTWLFLE 246
            ++K + W+  +
Sbjct: 228 SVDKPRGWIVED 239


>gi|124800774|ref|XP_001349559.1| 3'-5' exonuclease, putative [Plasmodium falciparum 3D7]
 gi|3845126|gb|AAC71832.1| 3'-5' exonuclease, putative [Plasmodium falciparum 3D7]
          Length = 416

 Score = 45.1 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 18/102 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM---PQVL 57
           M  + +D E        K G         +I   +      + ++D      +      +
Sbjct: 74  MKMIGLDIEGY------KIGKYGIVS---IIQICY----EDIYIFDIYKCDNVYLFINYI 120

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
           K+ LE  D+  V H+   + ++L   +N+ +     + T V 
Sbjct: 121 KDILECDDIIKVTHDCREDCSILYNQYNIHLK--NILDTQVA 160


>gi|313124719|ref|YP_004034978.1| DNA polymerase iii polc-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312281282|gb|ADQ62001.1| DNA polymerase III PolC-type [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 298

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 38/148 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHDPVMPQVL-- 57
               +D ET         G+  Y ++V  I       +  +       +           
Sbjct: 11  DYCVLDTETT--------GLSAYYDEVIEIGI-LRVRNGEITDRYEQLIKPENEIDGFIT 61

Query: 58  ------------KEALEN---------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                       K A+E+             IV HN+ F+   L A F+ DI  + ++ T
Sbjct: 62  SLTGITNEMVADKPAIEDVKSDVLAFLGSDIIVGHNTSFDVRFLAAGFHEDIA-NEYMDT 120

Query: 97  LVLARSNGL---PSALKAVGEALKLSSQ 121
           +  AR          L  + E L L++ 
Sbjct: 121 MQFARKLYPDLTHHRLSDLSEYLYLTNN 148


>gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 663

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
           +VL+  LE + D  +VAHN+ F+   L    A + +    +  I TL LAR         
Sbjct: 494 EVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYPQFKRF 553

Query: 108 ALKAVGEALKLS 119
            L  + +   +S
Sbjct: 554 GLGVLSKKFGVS 565


>gi|325142705|gb|EGC65085.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           961-5945]
 gi|325198636|gb|ADY94092.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136]
          Length = 244

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 40/192 (20%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 64  EVLEGK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 PNHREAWRLFGE 159
               EA     E
Sbjct: 178 DLMGEAAEEKME 189


>gi|311896062|dbj|BAJ28470.1| putative exonuclease [Kitasatospora setae KM-6054]
          Length = 617

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 16/97 (16%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NL 86
           D  PV +     +          +   +   L +  V  VAHN+ F+   L   F    L
Sbjct: 63  DPGPVHVHGLTAERLRGAPAFEQVADRIGALL-DGRVM-VAHNAQFDYDFLAHEFARARL 120

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKLSS 120
            +P+ R +CTL L R    P    +L ++     +  
Sbjct: 121 HLPVARRLCTLALNRRVEPPVAGLSLASLAAYYGVPQ 157


>gi|325689970|gb|EGD31974.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK115]
          Length = 814

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 73/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCHGIFLRRPQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER++  +    +   L        + +T L    G  L 
Sbjct: 242 DLEERSEQLKFARFMEEALDQQEPSFLEAQTGLGKTFGYLLP 283


>gi|161870374|ref|YP_001599545.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442]
 gi|161595927|gb|ABX73587.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 053442]
          Length = 187

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 69  VAHNSYFERTVLK---ACFNLDIP---IHRWICTLVLARSNGLP--SALKAVGEALKLSS 120
           + HN+ F+   L        L            TL +AR       ++L A+     +  
Sbjct: 34  IIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDR 93

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
            K      LI     GE +  +  R      EA     E
Sbjct: 94  SKRVLHGALIDCELLGEVYLAMTRRQFDLMGEAAEEKME 132


>gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905]
 gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905]
          Length = 1443

 Score = 45.1 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNGLP- 106
             + +     + +    +VAHN+ F+   L      F L+   H  I TL LAR      
Sbjct: 494 EQVIKEFHAFIGDG--IVVAHNASFDIGFLYTGYKKFGLEGTTHPVIDTLELARLLYPTM 551

Query: 107 --SALKAVGEALKLS 119
               L  + +   + 
Sbjct: 552 KNHRLNTLCKKFNIE 566


>gi|319638369|ref|ZP_07993131.1| DNA polymerase subunit III [Neisseria mucosa C102]
 gi|317400118|gb|EFV80777.1| DNA polymerase subunit III [Neisseria mucosa C102]
          Length = 245

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 30/176 (17%)

Query: 2   ATLFIDFETRSPID------LTKCGICKYAE---DVCVILF----------AFGFDDHPV 42
             + +D ET           +   G+        D  + L+          A       +
Sbjct: 4   RQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPERDMPEEAAKVHGLTI 63

Query: 43  ELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFN---LDIPIHRWI 94
           E+ +  + P   QV K+   +      ++ HN+ F+   L           ++    +  
Sbjct: 64  EVLEAKNAPPFAQVGKQI-ADFIRGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCKVT 122

Query: 95  CTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            TL +AR       ++L A+     +   K      LI     GE +  +  +   
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQFD 178


>gi|268532256|ref|XP_002631256.1| C. briggsae CBR-CRN-3 protein [Caenorhabditis briggsae]
 gi|187036904|emb|CAP23569.1| CBR-CRN-3 protein [Caenorhabditis briggsae AF16]
          Length = 868

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 51/190 (26%), Gaps = 26/190 (13%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
            +DL    +  Y       L      D    +        +  +L E   N ++  V H 
Sbjct: 294 SVDLEHHEMRTYLGLT--CLIQISTRDEDFIIDPFPMWDRI-GILNEPFTNPNILKVFHG 350

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           S  +   L+  F + +       T V  +    P  +L  +    + +   +++  +L  
Sbjct: 351 SDNDVLWLQRDFGVHV--VNLFDTYVAMKKLKYPKFSLAYLA--FRFADVVLDKQYQLAD 406

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS--SKEQELWYLD 189
              +                        Y + D       +  L         ++L  + 
Sbjct: 407 WRARPLR----------------NAMINYAREDTHYLLYSYDMLREQLLQQGHKDLENVY 450

Query: 190 QTINDRGYCV 199
              ND    V
Sbjct: 451 AESNDLCIRV 460


>gi|261400727|ref|ZP_05986852.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
           23970]
 gi|269209492|gb|EEZ75947.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
           23970]
          Length = 244

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 50/186 (26%), Gaps = 34/186 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF--AFGFDDHPVELWDCVHDPVMPQVL-- 57
             + +D ET     L   G  +  E   + +        +  + +      P     +  
Sbjct: 4   RQIILDTETTG---LYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAAKVHG 60

Query: 58  --KEALENTDVT-----------------IVAHNSYFERTVLK---ACFNLDIP---IHR 92
              E LE  +                   ++ HN+ F+   L        L         
Sbjct: 61  LTIEVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 93  WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              TL +AR       ++L A+     +   K      LI     GE +  +  R     
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLM 180

Query: 151 REAWRL 156
            E  + 
Sbjct: 181 GEDEKE 186


>gi|254252714|ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
 gi|124895323|gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
          Length = 244

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 52/189 (27%), Gaps = 36/189 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET       + G  +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTGLN--ARAG-DRIIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVH 57

Query: 39  DHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E   D      +   ++E +      ++ HN+ F+   L      L +P       
Sbjct: 58  GLTTEFLSDKPKFAEVADQIREFVR--GAELIIHNAPFDLGFLDAEFALLGLPPFSEHCA 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
             I TLV A+        +L A+ +   +S+        L+      E +  +       
Sbjct: 116 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSL 175

Query: 150 HREAWRLFG 158
             +      
Sbjct: 176 VIDMLDDAA 184


>gi|257056403|ref|YP_003134235.1| ribonuclease D [Saccharomonospora viridis DSM 43017]
 gi|256586275|gb|ACU97408.1| ribonuclease D [Saccharomonospora viridis DSM 43017]
          Length = 413

 Score = 45.1 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 55/191 (28%), Gaps = 34/191 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L +D E        +    +Y       L     +     L D +        L E +  
Sbjct: 50  LAVDTE--------RASGYRYWPKAY--LIQIRREGAGTFLIDPIPLRDHFTPLAEVMN- 98

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQK 122
             V  V H +  +   L     L +       T +  R  G    AL  + E+L      
Sbjct: 99  -QVEWVLHAASQDLPCLAE---LGLHPPSLFDTELAGRLAGYQRVALGTLVESL------ 148

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
              G +L       E      D ++      W     Y   DV +   + ++LE   +  
Sbjct: 149 --LGYQL-------EKGHSAADWSRRPLPLDW---LNYAALDVELLLPLREKLEEELAAS 196

Query: 183 QELWYLDQTIN 193
            +L +  Q   
Sbjct: 197 GKLEWARQEFE 207


>gi|329956618|ref|ZP_08297191.1| DNA polymerase III, epsilon subunit family protein [Bacteroides
           clarus YIT 12056]
 gi|328523990|gb|EGF51066.1| DNA polymerase III, epsilon subunit family protein [Bacteroides
           clarus YIT 12056]
          Length = 163

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 25/137 (18%)

Query: 5   FIDFETRSPIDLTKCGICK-YAEDVCVILFAFG-FDDHPVELW------------DCVHD 50
            IDFET +    + C +      D  ++   +      P                D    
Sbjct: 6   AIDFETANEQRTSVCSVGVVIVRDGEIVDNYYSLIRPEPEYYTYWNTRVHGLTLADTACA 65

Query: 51  PVMP---QVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
           PV P   Q +   +E   +T+VAHN  F+ + LK     + +D P + + CTL  +R   
Sbjct: 66  PVFPTVWQEIAPRIE--GLTLVAHNKAFDESCLKAVFRTYGMDYPDYDFRCTLQASRRAI 123

Query: 105 ---LPSALKAVGEALKL 118
                  L  V      
Sbjct: 124 KGLPDYQLHTVAAWCGY 140


>gi|317485586|ref|ZP_07944462.1| exonuclease [Bilophila wadsworthia 3_1_6]
 gi|316923123|gb|EFV44333.1| exonuclease [Bilophila wadsworthia 3_1_6]
          Length = 169

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 69  VAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR--SNGLPSALKAVGEALKLSSQKM 123
           VAHN+ F+R VL+AC     + +P   ++CTL  +R         L AV     +     
Sbjct: 86  VAHNAPFDRRVLEACCQSNGIALPDLPFVCTLRESRRKLKLPSHKLDAVCRCCGIPLDHH 145

Query: 124 EEGKELIA 131
             G + IA
Sbjct: 146 HAGSDAIA 153


>gi|301308097|ref|ZP_07214051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3]
 gi|300833567|gb|EFK64183.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3]
          Length = 1267

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/93 (10%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
             ++  V++      + + +   +    ++L+R     +  ++      +  + +E+   
Sbjct: 767 IKYDIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLIEKMNH 823

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           L ++F  G       +         W  F  Y 
Sbjct: 824 LKSKFMAGGQANGYKEETLNKIWSDWEKFASYA 856


>gi|308179821|ref|YP_003923949.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045312|gb|ADN97855.1| DNA-directed DNA polymerase III, epsilon chain (putative)
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 173

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 13/112 (11%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF 75
           L K     +  +V +         H  ++ D    P + Q ++   +  D  ++AHN+ F
Sbjct: 33  LIKPESDFFWRNVQIHGI------HEADVADAPKFPDVWQHIEPFFQR-DRLVIAHNAPF 85

Query: 76  ERTVLKA---CFNLDIPIHRWICTLVLA---RSNGLPSALKAVGEALKLSSQ 121
           +  VL+     + +  P +  + T+  +           L  V +AL +  Q
Sbjct: 86  DIGVLRNTLAHYGISAPEYLSMDTVNTSQRFYPELPNHKLDTVCQALDIDLQ 137


>gi|262342133|gb|ACY54577.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R     S G+ +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFQPSPGQLMVGADLAGIELRMLSHFL-------ARYDQGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +    L++ A   K     + + +A + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSTAAKKKGKEIRQAYIEAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + +   + +           ++ 
Sbjct: 120 LDKLLDAIKKASERGFIKALDGRKII 145


>gi|302410881|ref|XP_003003274.1| DNA polymerase gamma [Verticillium albo-atrum VaMs.102]
 gi|261358298|gb|EEY20726.1| DNA polymerase gamma [Verticillium albo-atrum VaMs.102]
          Length = 963

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 59/225 (26%), Gaps = 8/225 (3%)

Query: 298 MNSDGRL---RGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
           +++  R+       +   A+            Q    P               T +T+  
Sbjct: 548 ISARDRIKSQMVVYEEDVATEKLEGGMENKNTQGFILPQIIPMGTITRRAVENTWLTASN 607

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
                +   +++ V A  G   V AD+   E   +A + G+                   
Sbjct: 608 AKRNRVGSELKAMVKAPPGYSFVGADVDSQEL-WIASLVGDATFKLHGGNAIGFMTLEGT 666

Query: 415 RSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           ++        T       R   KV      Y  G K   ++      NL+    L   + 
Sbjct: 667 KAAGTDLHSRTAGILGITRNDAKVFNYGRIYGAGLKFAAQLLRQFDPNLSEKETLETASK 726

Query: 471 APEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
                +  +   + + +        + F+    E   +  R +  
Sbjct: 727 LYVNTKGTKTNRKVLYKRPFWRGGTESFVFNKLEEFAEQERPRTP 771


>gi|150010065|ref|YP_001304808.1| DNA polymerase III subunit alpha [Parabacteroides distasonis ATCC
           8503]
 gi|262382633|ref|ZP_06075770.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B]
 gi|298374425|ref|ZP_06984383.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19]
 gi|149938489|gb|ABR45186.1| DNA polymerase III alpha subunit [Parabacteroides distasonis ATCC
           8503]
 gi|262295511|gb|EEY83442.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B]
 gi|298268793|gb|EFI10448.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19]
          Length = 1267

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/93 (10%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
             ++  V++      + + +   +    ++L+R     +  ++      +  + +E+   
Sbjct: 767 IKYDIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLIEKMNH 823

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           L ++F  G       +         W  F  Y 
Sbjct: 824 LKSKFMAGGQANGYKEETLNKIWSDWEKFASYA 856


>gi|256838875|ref|ZP_05544385.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13]
 gi|256739794|gb|EEU53118.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13]
          Length = 1267

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/93 (10%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
             ++  V++      + + +   +    ++L+R     +  ++      +  + +E+   
Sbjct: 767 IKYDIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLIEKMNH 823

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           L ++F  G       +         W  F  Y 
Sbjct: 824 LKSKFMAGGQANGYKEETLNKIWSDWEKFASYA 856


>gi|49483644|ref|YP_040868.1| hypothetical protein SAR1466 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425521|ref|ZP_05601946.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428180|ref|ZP_05604578.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257433568|ref|ZP_05609926.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436410|ref|ZP_05612457.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282904038|ref|ZP_06311926.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905803|ref|ZP_06313658.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908773|ref|ZP_06316591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911034|ref|ZP_06318836.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914246|ref|ZP_06322033.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M899]
 gi|282919169|ref|ZP_06326904.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282924353|ref|ZP_06332027.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C101]
 gi|283958220|ref|ZP_06375671.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293501272|ref|ZP_06667123.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510233|ref|ZP_06668941.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M809]
 gi|293526828|ref|ZP_06671512.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427965|ref|ZP_06820597.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297591065|ref|ZP_06949703.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|81828017|sp|Q6GGV4|DING_STAAR RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|49241773|emb|CAG40464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271978|gb|EEV04116.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275021|gb|EEV06508.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257281661|gb|EEV11798.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284692|gb|EEV14812.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M876]
 gi|282313740|gb|EFB44133.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316979|gb|EFB47353.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282322314|gb|EFB52638.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324729|gb|EFB55039.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327037|gb|EFB57332.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331095|gb|EFB60609.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595656|gb|EFC00620.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283790369|gb|EFC29186.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920386|gb|EFD97450.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291096277|gb|EFE26538.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467177|gb|EFF09695.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus M809]
 gi|295128323|gb|EFG57957.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297575951|gb|EFH94667.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438140|gb|ADQ77211.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195353|gb|EFU25740.1| hypothetical protein CGSSa00_06780 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 897

 Score = 45.1 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 109/361 (30%), Gaps = 63/361 (17%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-------------------D 50
           T + +DL   G     +D+  I   F  ++   ++ D  H                   +
Sbjct: 5   TYAVVDLETTGNQLDFDDIIQIGITFVRNN---QIIDTYHSMIRTNLEIPPFIQALTSIE 61

Query: 51  PVMPQV------LKEALENT--DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV- 98
             M Q       + E + +   D   VAHN  F+   +K  F   N+     + I TL  
Sbjct: 62  ENMLQQAPYFNQVAEEIYDKIKDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEI 121

Query: 99  --LARSNGLPSALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLYDRNKP 148
             +A        L  + EA  +                K +I  F K E       +   
Sbjct: 122 FKIAFPTDKSYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLY 181

Query: 149 N---------HREAWRLFGEYCKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRG 196
                     +   + +  +Y    +  + E F           ++     +    +   
Sbjct: 182 YLSKQLKYDLYDIFFEMVRQYDAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYS 241

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-L 254
             VD        Q + +  T LDQ + S    + +S    + L   L  L   +     +
Sbjct: 242 KAVDQLGLTYRPQQLYLAETILDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHV 301

Query: 255 TETTCQRVLSS--NKKLTPQAIQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQ 309
             +T  ++L S   +K  P   +  N ++     +S    ++  L+  +  D      + 
Sbjct: 302 MISTNTKLLQSQLLEKDIPAMNEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVN 361

Query: 310 F 310
            
Sbjct: 362 I 362


>gi|325524698|gb|EGD02688.1| putative DNA polymerase/helicase [Burkholderia sp. TJI49]
          Length = 374

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 42/138 (30%), Gaps = 26/138 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD---HPVELWDCVHD------PVMP 54
           +F+D ET     +             +            +P +               M 
Sbjct: 16  VFVDLETTGGSSVEHRITEIGVV--EIGPLGVSTWTSLVNPGQSIPPFIQQLTGISEAMV 73

Query: 55  QV------LKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
           +       L  AL         VAHN+ F+R  L+A F    L       +CT+ L+R+ 
Sbjct: 74  RDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNP-DVLCTVRLSRAL 132

Query: 104 GL---PSALKAVGEALKL 118
                   L A+ E   L
Sbjct: 133 FPRESRHGLDALIERHGL 150


>gi|299142345|ref|ZP_07035477.1| exonuclease [Prevotella oris C735]
 gi|298576067|gb|EFI47941.1| exonuclease [Prevotella oris C735]
          Length = 162

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 27/143 (18%)

Query: 1   MATLF-IDFETRSPIDLTKCGIC-KYAEDVCV--ILFAFGFDDHPVELW----------- 45
           M     IDFET +    + C +      D  +    ++      P               
Sbjct: 1   MKDFAAIDFETANNERTSVCSVGLVVMRDGKIADRFYSL-IHPEPDYYTYWNTRVHGLTQ 59

Query: 46  -DCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
            D  H P+ P+    ++  + N  + +VAHN  F+ + LK    C+ +D P + + CTL 
Sbjct: 60  ADTNHAPIFPEVWCKVEPLIVN--LPLVAHNKAFDESCLKAVFRCYQMDYPDYSFYCTLA 117

Query: 99  LARSNGL--PSALKAVGEALKLS 119
            +R         L  +       
Sbjct: 118 QSRRVWPQGHHNLDIIAARCGYD 140


>gi|255012661|ref|ZP_05284787.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_7]
          Length = 1281

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 10/93 (10%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
             ++  V++      + + +   +    ++L+R     +  ++      +  + +E+   
Sbjct: 781 IKYDIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLIEKMNH 837

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           L ++F  G       +         W  F  Y 
Sbjct: 838 LKSKFMAGGQANGYKEETLNKIWSDWEKFASYA 870


>gi|241205541|ref|YP_002976637.1| exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240859431|gb|ACS57098.1| Exonuclease RNase T and DNA polymerase III [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 199

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 25/140 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGIC-KYAEDVCVI---------------LFAFGFDD-HPVEL 44
            T+ IDFET +    + C +   + ED  V                          P  +
Sbjct: 5   KTIAIDFETANEQRGSACSVGLAWIEDGRVTRVEERLIRPREMRFSGMNIAIHGIRPEHV 64

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLAR 101
            D    P +     E +  +  T++AHN+ F+ +V +A  +L     P   ++C+L +A+
Sbjct: 65  EDAPEFPEVMDEFHEDI--SGATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMAQ 122

Query: 102 SNGLP---SALKAVGEALKL 118
                     L  + E L L
Sbjct: 123 RIWPHFLSHRLNLIAEHLGL 142


>gi|212709216|ref|ZP_03317344.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
           30120]
 gi|212688128|gb|EEB47656.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
           30120]
          Length = 253

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 47/167 (28%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+     +  +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHYEGHN--IIEIG-AVEVINRRLTGRNFHVYIKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-LKEALENTDVTIV------AHNSYFERTVLK---ACFNLDIPI 90
                  + D  +    +   + +  +  +       HN+ F+   +       N  IP 
Sbjct: 61  EAFEVHGISDEFLQDKPVFADIADEFIEFIRGAELVIHNAPFDIGFMDYEFRKLNRGIPP 120

Query: 91  HRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
               CT    LVLAR         L A+ +   + + K      L+ 
Sbjct: 121 TAEFCTITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLD 167


>gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 30/149 (20%)

Query: 2   ATLFIDFETR-----SPIDLTKCGICKYAEDVCVILF-----------AFGFDDHPVELW 45
            T+ +D ET      S   +    I   A ++    F               +   +++ 
Sbjct: 5   RTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQPGRSIESGALKVH 64

Query: 46  DCVHDPVMPQVLKEALEN------TDVTIVAHNSYFERTVLKACFNL---DIPIH---RW 93
              +  ++ + + + + +       +  +V HN+ F+   +     +    I I+     
Sbjct: 65  GITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDIGFINQELEILNKKIKINTFCSI 124

Query: 94  ICTLVLARSNGLPSA--LKAVGEALKLSS 120
           I TL +AR         L A+    K++ 
Sbjct: 125 IDTLKMARKLFPGKKNTLDALCTRYKINK 153


>gi|188532878|ref|YP_001906675.1| DNA polymerase II [Erwinia tasmaniensis Et1/99]
 gi|188027920|emb|CAO95777.1| DNA polymerase II [Erwinia tasmaniensis Et1/99]
          Length = 787

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 17/105 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGI-CKYAEDVCVILFAFGFDDHPVELWD-----CVHDPVMPQ 55
             + +D ET    +L   G+      DV ++      ++      D         P + +
Sbjct: 153 KWVSLDIETTRHGELYCIGLEGCGQRDVYMLG----PENGDASRLDFNLEYVASRPQLLE 208

Query: 56  VLKEALE--NTDVTIVAHNS-YFERTVLKAC---FNLDIPIHRWI 94
            L       + DV  +  N   F+  VL+     + + + + R  
Sbjct: 209 KLNAWFARHDPDVL-IGWNLVQFDLRVLQKHADRYGIPLVLGRGH 252


>gi|238799153|ref|ZP_04642606.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
 gi|238716994|gb|EEQ08857.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
          Length = 259

 Score = 45.1 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 12  RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVINRRLTGRNFHVYVKPDRLVDP 65

Query: 41  PVELWDCVHDPVMPQ---------VLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI 88
                  + D  +              E +      ++ HN+ F+   +         DI
Sbjct: 66  EAYGVHGISDEFLADKPTFAEITPEFLEFIR--GAELIIHNAAFDIGFMDYEFRMLQQDI 123

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P     CT    L++AR         L A+ +   + + K      L+ 
Sbjct: 124 PKTETFCTITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLD 172


>gi|262212297|gb|ACY35765.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     V
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEV 107


>gi|257886664|ref|ZP_05666317.1| exonuclease [Enterococcus faecium 1,141,733]
 gi|257822718|gb|EEV49650.1| exonuclease [Enterococcus faecium 1,141,733]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 33/148 (22%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET      S   L    +   +  ++   +             W        
Sbjct: 1   MNFIAMDFETANHQPYSACSLALVMVKNSQIVDEFYTL-----IQPETPFFWRNVQIHGI 55

Query: 46  ---DCVHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
              D  + P  P+V   ++   +  +  +VAHN+ F+  VL      ++L+ P +  +CT
Sbjct: 56  HQEDVRNAPKFPEVWQTIQPYFQ-KNRLVVAHNAAFDTKVLAGCLDYYHLEQPNYLSLCT 114

Query: 97  LVLARSN---GLPSALKAVGEALKLSSQ 121
           +  +R          L  V E L +   
Sbjct: 115 VKSSRRLFPEFPNHRLNTVCENLNIQLD 142


>gi|170693649|ref|ZP_02884807.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
 gi|170141431|gb|EDT09601.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
          Length = 423

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
               VAHN+ F+R  L+       +       +CT+ L+R+         L A+ E   L
Sbjct: 131 GKLFVAHNASFDRGFLRGEFRRAGISFDP-DVLCTVRLSRALFPSEKRHGLDALVERHSL 189


>gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
 gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
          Length = 1529

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 27/139 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYA---EDVCV-----------ILFAFGFDDHPVE----LW 45
           +  D ET     +    I   A    +  +           +   +  +         + 
Sbjct: 499 VVFDIETTGFSPIKNRIIEIGAVKIRNGEILERFSEFINPQVPIPYRIEKLTSITDEMVM 558

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
           D     V+     E  ++    +V HN  F+ + +        +D+       TL LAR 
Sbjct: 559 DAPTREVIIPKFVEFCKDA--VLVGHNVAFDISFINQNCQDLGIDVDYTTV-DTLWLARY 615

Query: 103 ---NGLPSALKAVGEALKL 118
                    L AV + L +
Sbjct: 616 FFPLQAKHTLDAVAKTLNV 634


>gi|262342197|gb|ACY54609.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRHDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|229472539|gb|ACQ72784.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +    L++ A   K     + + +A + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAKEKGKEIRQAYIEAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + E   + +           ++ 
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRKII 145


>gi|108799177|ref|YP_639374.1| 3'-5' exonuclease [Mycobacterium sp. MCS]
 gi|119868292|ref|YP_938244.1| 3'-5' exonuclease [Mycobacterium sp. KMS]
 gi|126434785|ref|YP_001070476.1| 3'-5' exonuclease [Mycobacterium sp. JLS]
 gi|108769596|gb|ABG08318.1| 3'-5' exonuclease [Mycobacterium sp. MCS]
 gi|119694381|gb|ABL91454.1| 3'-5' exonuclease [Mycobacterium sp. KMS]
 gi|126234585|gb|ABN97985.1| 3'-5' exonuclease [Mycobacterium sp. JLS]
          Length = 428

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 45/162 (27%), Gaps = 29/162 (17%)

Query: 38  DDHPVELWDCVHDPV---MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
               V +    H      +   + + L+  +   V H +  +   L     L +   +  
Sbjct: 85  GAGTVLIDPVNHGEDPTMVMAPVADVLDTDE--WVLHAADQDLPCLAE---LGMRPPKLY 139

Query: 95  CTLVLARSNGLPS-ALK-AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            T +  R  GL    L   V E L L   K                     D +K    +
Sbjct: 140 DTELAGRLAGLARVNLATMVSELLGLQLMK----------------GHGAADWSKRPLPD 183

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
            W     Y   DV V  E+   +  +   + +  +  Q    
Sbjct: 184 DW---LNYAALDVEVLLELRDAVAAVLDDQGKTDWAIQEFEH 222


>gi|270263405|ref|ZP_06191674.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13]
 gi|270042289|gb|EFA15384.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13]
          Length = 246

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 50/186 (26%), Gaps = 43/186 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVINRRLTGRHYHVYVKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-LKEALENTDV------TIVAHNSYFERTVLK---ACFNLDIPI 90
                  + D  +      + + +  +       +V HN+ F+   +          +P 
Sbjct: 61  EAYGVHGISDEFLADKPTFDQIADEFIDFIRGGELVIHNASFDIGFMDHEFRMLQKGLPK 120

Query: 91  HRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
               CT    L++AR         L A+    ++ + K      L+      E +  +  
Sbjct: 121 TDTFCTITDSLLMARRLFPGKRNNLDALCGRYEIDNSKRTLHGALLDAEILAEVYLAMTG 180

Query: 145 RNKPNH 150
                 
Sbjct: 181 GQTSMA 186


>gi|262212239|gb|ACY35736.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  N +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSNASRKGQEI 107


>gi|229472185|gb|ACQ72607.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472199|gb|ACQ72614.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472315|gb|ACQ72672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342203|gb|ACY54612.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 38/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           + +      +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|229031267|ref|ZP_04187273.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
 gi|228730025|gb|EEL80999.1| DNA polymerase III alpha subunit [Bacillus cereus AH1271]
          Length = 315

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 85/323 (26%), Gaps = 43/323 (13%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AF-----GFDDHPVELWDCVH-- 49
             + IDFET         + +    KY     V  F ++        D    L    +  
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYR 68

Query: 50  --DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-- 100
             D    + +            IVAHN+ F+   LK       L  P ++ I T+ LA  
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFLAKK 128

Query: 101 RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFG 158
              +     L+ +   L +         + I      +    + +               
Sbjct: 129 YMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASIEEETNRKSDTKVLDETA 188

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
            Y    V       KR            YLD         V V         +       
Sbjct: 189 VYEA--VKKMLVRNKRDIEWVRCMNVGSYLDIKAFYPVMRVKVKGRKKYV--LTEILEDE 244

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS---SNKKLTPQAIQ 275
            +E+ +      +    +   +  L              T + VL       +     +Q
Sbjct: 245 VKEICTGLNCEPALKSEVGNTRIMLN-------------TLEDVLKLESYILEQYDFVLQ 291

Query: 276 VFNNRMRASRSAVLKLNTLVEAM 298
             ++  ++  +A  KL   +  M
Sbjct: 292 ALHDYKQSEMNADEKLKEYLNIM 314


>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
 gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|15837353|ref|NP_298041.1| ribonuclease D [Xylella fastidiosa 9a5c]
 gi|9105641|gb|AAF83561.1|AE003916_15 ribonuclease D [Xylella fastidiosa 9a5c]
          Length = 362

 Score = 45.1 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 26/175 (14%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L     +D  + +   V    M   L   L   +V  + H++  +    K      
Sbjct: 36  PELALVQIAIEDEILLVDPLVPG--MTDALGLWLAAPNVIKIMHSASEDLIAFKYACG-- 91

Query: 88  IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +       T + A   GL   +   K V     ++ +K E   + + R            
Sbjct: 92  VLPRPLFDTQIGAALTGLGGGMGYQKLVATVTNVALEKGETRSDWMHRPLTPAQ------ 145

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                         +Y   DV     +   L    ++     +L++        +
Sbjct: 146 -------------LDYAANDVRYLFALHDTLTERLAEMSRSAWLEEDCTRLTDNI 187


>gi|297191335|ref|ZP_06908733.1| ribonuclease D [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720654|gb|EDY64562.1| ribonuclease D [Streptomyces pristinaespiralis ATCC 25486]
          Length = 428

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 31/182 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           +D  +    +Y +   ++      +      +            L +AL +T+   + H 
Sbjct: 67  VDAERASGYRYGQRAYLV--QLRREGAGTALVDPVGCPD--LSALGDALADTE--WILHA 120

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLSSQKMEEGKELI 130
           +  +   L+    + +   R   T +  R  G P   L A+ E  L  + +K   G   +
Sbjct: 121 ATQDLPCLRE---IGMVPARIFDTELAGRLGGFPRVGLGAMVESVLGYALEK---GHSAV 174

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
               +                E W     Y   DV +  ++   LE    ++ +L +  Q
Sbjct: 175 DWSTRPL-------------PEPW---LRYAALDVELLVDLRDALEKELDRQGKLDWAHQ 218

Query: 191 TI 192
             
Sbjct: 219 EF 220


>gi|148807530|gb|ABR13568.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 160

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVGSRKQIAERLEGVGVKFKLQTEKGAIIANEKVLEGI--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH 336
              ++++ +     DGR+ G +   GA  TGR +        +P  S  +
Sbjct: 102 RAAQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVPSVSAPY 149


>gi|11498108|ref|NP_069333.1| DNA polymerase B1 (polB) [Archaeoglobus fulgidus DSM 4304]
 gi|3122019|sp|O29753|DPOL_ARCFU RecName: Full=DNA polymerase
 gi|2650130|gb|AAB90741.1| DNA polymerase B1 (polB) [Archaeoglobus fulgidus DSM 4304]
          Length = 781

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 75/226 (33%), Gaps = 28/226 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D E      L+  G+ +  +D  ++  +   +D   E+     +  +     + +
Sbjct: 163 KMLVFDCE-----MLSSFGMPEPEKDPIIV-ISVKTNDDD-EIILTGDERKIISDFVKLI 215

Query: 62  E--NTDVTIVAHNS-YFERTVL-KACFNLDIPIHRWICTLVLARSNGLPS--------AL 109
           +  + D+  V +N   F+   L K     +IP+         +                +
Sbjct: 216 KSYDPDII-VGYNQDAFDWPYLRKRAERWNIPLDVGRD---GSNVVFRGGRPKITGRLNV 271

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP--NHREAWRLFGEYCKGDVTV 167
                A+++S  K+++ + +            +  ++      R        Y + D   
Sbjct: 272 DLYDIAMRISDIKIKKLENVAEFLGTKIEIADIEAKDIYRYWSRGEKEKVLNYARQDAIN 331

Query: 168 TREIFKRLEPLSSKEQELWYL---DQTINDRGYCVDVALAHTLNQI 210
           T  I K L P+  +  ++  L   D T   RG  VD  L     +I
Sbjct: 332 TYLIAKELLPMHYELSKMIRLPVDDVTRMGRGKQVDWLLLSEAKKI 377


>gi|332799219|ref|YP_004460718.1| DNA polymerase III subunit alpha [Tepidanaerobacter sp. Re1]
 gi|332696954|gb|AEE91411.1| DNA polymerase III, alpha subunit [Tepidanaerobacter sp. Re1]
          Length = 1422

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 30/152 (19%)

Query: 4   LFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCV-------- 48
           + +D ET        ++ + G  K   +  +  F+         P  + +          
Sbjct: 409 VVVDIETTGLCFDNDEIIEIGAVKILNNEIIDRFSSFIKPQRLIPTNIINLTGITNDMLK 468

Query: 49  ---HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
                  +     E L +     VAHN+ F+   ++       +    +  + TL LAR 
Sbjct: 469 TARPIEKVLPSFMEFLGDG--VFVAHNAEFDSGFIRREASKLGIPFK-NNILDTLALARI 525

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIA 131
                    L  + + L +   KM      I 
Sbjct: 526 IFSKLKNHRLDTLAKELNI---KMGSHHRAID 554


>gi|327469619|gb|EGF15088.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK330]
          Length = 814

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 72/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKVLVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCHGIFLRRPQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER +  +    +   L        + +T L    G  L 
Sbjct: 242 GLEERPEQLKFARFMEEALDQQEASFLEAQTGLGKTFGYLLP 283


>gi|262212293|gb|ACY35763.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
            +  R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YRTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|254560605|ref|YP_003067700.1| DNA polymerase III subunit epsilon [Methylobacterium extorquens
           DM4]
 gi|254267883|emb|CAX23749.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           DM4]
          Length = 236

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 27/145 (18%)

Query: 2   ATLFIDFETRS--------PIDLTKCGICKYAEDVCV--ILF----AFGFDDHPVELWD- 46
             + +D ET           I++    +  + +       L     A       V     
Sbjct: 3   REIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQRAVSEGAFAVHGISD 62

Query: 47  --CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICT 96
                 PV  +V+   LE   D  +V HN+ F+   L              I +   + T
Sbjct: 63  AMLADKPVFAEVVDAFLEFCGDARLVIHNAPFDVGFLNMEFARLGPAAPKAIALEDVVDT 122

Query: 97  LVLARSNGLPS--ALKAVGEALKLS 119
           L+LAR     +   L A+     + 
Sbjct: 123 LLLARRKHPGAANNLDALCNRYGVD 147


>gi|240138045|ref|YP_002962517.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240008014|gb|ACS39240.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 236

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 27/145 (18%)

Query: 2   ATLFIDFETRS--------PIDLTKCGICKYAEDVCV--ILF----AFGFDDHPVELWD- 46
             + +D ET           I++    +  + +       L     A       V     
Sbjct: 3   REIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQRAVSEGAFAVHGISD 62

Query: 47  --CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICT 96
                 PV  +V+   LE   D  +V HN+ F+   L              I +   + T
Sbjct: 63  AMLADKPVFAEVVDAFLEFCGDARLVIHNAPFDVGFLNMEFARLGPAAPKAIALEDVVDT 122

Query: 97  LVLARSNGLPS--ALKAVGEALKLS 119
           L+LAR     +   L A+     + 
Sbjct: 123 LLLARRKHPGAANNLDALCNRYGVD 147


>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
 gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKIKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
 gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|163850914|ref|YP_001638957.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens
           PA1]
 gi|163662519|gb|ABY29886.1| DNA polymerase III, epsilon subunit [Methylobacterium extorquens
           PA1]
          Length = 241

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 27/145 (18%)

Query: 2   ATLFIDFETRS--------PIDLTKCGICKYAEDVCV--ILF----AFGFDDHPVELWD- 46
             + +D ET           I++    +  + +       L     A       V     
Sbjct: 8   REIVLDTETTGTEARNGDRLIEIGCVELINHVQTGETFHRLINPQRAVSEGAFAVHGISD 67

Query: 47  --CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWICT 96
                 PV  +V+   LE   D  +V HN+ F+   L              I +   + T
Sbjct: 68  AMLADKPVFAEVVDAFLEFCGDARLVIHNAPFDVGFLNMEFARLGPAAPKAIALEDVVDT 127

Query: 97  LVLARSNGLPS--ALKAVGEALKLS 119
           L+LAR     +   L A+     + 
Sbjct: 128 LLLARRKHPGAANNLDALCNRYGVD 152


>gi|262212261|gb|ACY35747.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G  L         + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKLAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212115|gb|ACY35674.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +    L++ A   K     + + +A + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAEKKGKEIRQAYIEAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + E   + +           ++ 
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRKII 145


>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
 gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|196012971|ref|XP_002116347.1| hypothetical protein TRIADDRAFT_64268 [Trichoplax adhaerens]
 gi|190580938|gb|EDV21017.1| hypothetical protein TRIADDRAFT_64268 [Trichoplax adhaerens]
          Length = 1146

 Score = 45.1 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 38/355 (10%), Positives = 93/355 (26%), Gaps = 38/355 (10%)

Query: 329  LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
            LP  + +     + +     + ++       +   +++ + A  G   V AD+   E  +
Sbjct: 771  LPPVAPAGTVTRRAVEATWLTASNAKANR--VGSELKAMIRAPPGYHFVGADVDSQELWI 828

Query: 389  LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA----QVTKDQRAIGKVMELALGYQGG 444
             A  A  ++      T          +S          +     R   K       Y  G
Sbjct: 829  AALYADARFGRTHGCTAIGWMTLQGKKSQGTDLHSKTAETVGISRDQAKTFNYGRIYGAG 888

Query: 445  AKAFQKMASTTGLNLNTFAHLVKTNS-APEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                Q++      ++       K                    +   +    D  +    
Sbjct: 889  LNYAQRLMRQFNPSMTLEDASDKAKILYASTKGITIYKLTRKGKKILQKLDPDTILD--- 945

Query: 504  ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLP 563
                  W      +    +E+ +   +  +    I ++ ++ +     +       + L 
Sbjct: 946  ----DDW------IDTTGHEILRKHLRGKKLDSYIKSKSKQWIGGSESEMFNALEAIALS 995

Query: 564  SGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD------ILAEGMMNA 617
                    +   +++              Y       +VQ+ + D      +    +   
Sbjct: 996  EKPKTPILECRISQALEPKVVG-----NAYLPSRINWVVQSSAVDYLHLILVCMRWLFEK 1050

Query: 618  TKAGYDIVLTVHDEIVCETPDTDEFNAS---MLYHLMTSNP----SWAKGLPLKA 665
                    +++HDE+       D F A+    + +L+T            LPL  
Sbjct: 1051 YNINGRFCISIHDEVRYLVKSEDRFRAALALQITNLLTRAMFAHKIKIYDLPLSV 1105



 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 64/260 (24%), Gaps = 45/260 (17%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--------GLPSALKAVGEAL 116
              IV HN  ++R+ ++  +N++     ++ T+ L            G    +       
Sbjct: 255 KKLIVGHNIGYDRSYIREQYNIESGNTVFLDTMSLHNCVGGLTSIQRGNWKKMNNGDHDA 314

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-------------RLFGEYCKG 163
              + K     +L       + +    +                       +   EYC  
Sbjct: 315 NGDTNKEAFWAKLSCPSSLADIYTLYTNNTLDKSPVDILIKGSMRDIKDNFQTLMEYCAT 374

Query: 164 DVTVT-------REIFKRLEPLSSKEQELWYL----DQTINDRGYCVDVA--LAHTLNQI 210
           DV  T        ++F    P       +  +            Y ++        L   
Sbjct: 375 DVYATHVVLKNVYKLFLLRCPHPVSFAGMLEMSSIFLPVDESWQYYLNTVEYTYQDLENE 434

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH-----LEDLTETTCQRVLSS 265
           ++     L  +   L                W      L       + L +T    +  +
Sbjct: 435 LNTLLKHLADDACHLLRNDRFRDDPWLWSLNWNIKRNSLKSLSNISKKLLKTITGELTEN 494

Query: 266 NKKLTPQAIQVFNNRMRASR 285
                    ++   R++  +
Sbjct: 495 IDD------KILEERLKLQK 508


>gi|321452793|gb|EFX64106.1| hypothetical protein DAPPUDRAFT_66464 [Daphnia pulex]
          Length = 181

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 5/96 (5%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69
           T   +DL       Y       L     D     + D +      Q L +   + ++  +
Sbjct: 60  TVIGVDLEHHSDRSYR--GITCLMQISTDKTD-YIIDTLKLWDHLQPLNKVFCDPNIVKI 116

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
              +  +   L+  F + +       T   A   G 
Sbjct: 117 FQGADSDVIWLQRDFGIYV--VNLFDTFQAASLLGF 150


>gi|309788586|ref|ZP_07683188.1| ribonuclease D [Shigella dysenteriae 1617]
 gi|308923613|gb|EFP69118.1| ribonuclease D [Shigella dysenteriae 1617]
          Length = 275

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|229472535|gb|ACQ72782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 39/144 (27%), Gaps = 9/144 (6%)

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
              D  R    A+ G  +V ADLAGIE R+LA          A   G            +
Sbjct: 7   PHGDEFRKLFRATPGMVMVGADLAGIELRMLAHYL-------ARWDGGRYGDVLINGDIH 59

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWED 477
              A      R + K +  A  Y  G +        +   +           +  +    
Sbjct: 60  QENADKIGISRRLVKTVTYAFLYGAGDQKIGLSYDQSLSADKAKKKGQEIRQAHMDAIPG 119

Query: 478 AENFCRWMQENHPEHAIEDLFIGT 501
            ++     ++            G 
Sbjct: 120 LQDLVEATKK-AANRGYIRAIDGR 142


>gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 1538

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 29/141 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYA---EDVCVI-LFAFGFDDHPVELWDCVHD--------- 50
           +  D ET     L    I   A   E+  ++  F+   +           +         
Sbjct: 514 VVFDIETTGFSPLKNKIIEIGAVKVENGKIVDRFSTFVNPE----VPIPFEIEKLTSISD 569

Query: 51  ------PVMPQVLKEALE-NTDVTIVAHNSYFERTVLKACFNLDIPIHR--WICTLVLAR 101
                 P + +VL + LE  +D  +VAHN+ F+ + ++    +         + T+ +AR
Sbjct: 570 NMVLGAPKIEEVLPKFLEFCSDAVMVAHNASFDMSFIRHNAMIQGKSFEPTVLDTVSMAR 629

Query: 102 SNGLPSA---LKAVGEALKLS 119
                     L  V + L++S
Sbjct: 630 FLLPNLNRFKLDTVAKELRIS 650


>gi|254443317|ref|ZP_05056793.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257625|gb|EDY81933.1| 3'-5' exonuclease domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 370

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 57/192 (29%), Gaps = 37/192 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E     +L          +  + L    FD   + L D   D  +     E L 
Sbjct: 27  EIALDSE---ADNLHHF-------ETKLCLLQLRFD-GTIYLLDVTADLDL-DRFWEIL- 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEA-LKLSS 120
            + + ++ H S F+  + +     +        +++ ++  G+    L A+ E    +  
Sbjct: 74  -SGLHLIMHGSDFDLRLFEEFCGFEAK--SLFDSMLASQLLGIKRIGLAALLEENFGVKI 130

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +  +   R                          +Y   DV    E+  +L     
Sbjct: 131 PKDSQKSDWSQRPLTP-------------------KMLKYAATDVLYLHELRDKLMARID 171

Query: 181 KEQELWYLDQTI 192
           +     +L Q  
Sbjct: 172 ELGRGEWLKQRC 183


>gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al
           Hakam]
 gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
 gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB108]
 gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           NVH0597-99]
 gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           03BB102]
 gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
 gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
          Length = 315

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 70/257 (27%), Gaps = 37/257 (14%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T++LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVLLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET---HECLYDRNKPNHREAW 154
                +     L+ +   L +         + I      +     E    R         
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASIEEEAKRKLNKKALDE 186

Query: 155 RLFGEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
            +  E    D+ V      + +           YLD         + V         +  
Sbjct: 187 TVVYE-AVKDILV----RNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTD 239

Query: 214 ERTKLDQELESLTYGLV 230
                 +E+ +      
Sbjct: 240 ILEDDVKEICTSLACEP 256


>gi|283470668|emb|CAQ49879.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 897

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 88/293 (30%), Gaps = 39/293 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL---VLARSNG 104
             +   +K      D   VAHN  F+   +K  F   N+     + I TL    +A    
Sbjct: 76  EEIYDKIK------DCIFVAHNVDFDLNFIKKAFKNCNIQYRPKKVIDTLEIFKIAFPTD 129

Query: 105 LPSALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLYDRNKPN------- 149
               L  + EA  +                K +I  F K E       +           
Sbjct: 130 KSYQLSELAEAHGITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKY 189

Query: 150 --HREAWRLFGEYCKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALA 204
             +   + +  +Y    +  + E F           ++     +    +     VD    
Sbjct: 190 DLYDIFFEMVRQYDAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVDQLGL 249

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRV 262
               Q + +  T LDQ + S    + +S    + L   L  L   +     +  +T  ++
Sbjct: 250 TYRPQQLYLAETILDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKL 309

Query: 263 LSS--NKKLTPQAIQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
           L S   +K  P   +  N ++     +S    ++  L+  +  D      +  
Sbjct: 310 LQSQLLEKDIPAMNEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNI 362


>gi|268316050|ref|YP_003289769.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus
           DSM 4252]
 gi|262333584|gb|ACY47381.1| Exonuclease RNase T and DNA polymerase III [Rhodothermus marinus
           DSM 4252]
          Length = 167

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 42/128 (32%), Gaps = 19/128 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEALE 62
           LF D ET            + A  V + L        P+ LW       +     +E   
Sbjct: 9   LFFDVETSGLRP------DRGAAIVELALLGAR---EPLLLWKGTSAQRLQRAQFRELFA 59

Query: 63  --NTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNGL---PSALKAVGE 114
                V  V HN  F+   +        L +P  R+I TL LAR          L A+  
Sbjct: 60  HVREGVI-VGHNLRFDFWFVTYEAGRLGLAVPPIRFIDTLGLARRLLPEQADYRLVALLH 118

Query: 115 ALKLSSQK 122
           AL +   K
Sbjct: 119 ALGIEPDK 126


>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|125717716|ref|YP_001034849.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus sanguinis SK36]
 gi|125497633|gb|ABN44299.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit,
           putative [Streptococcus sanguinis SK36]
          Length = 814

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 72/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIVLIENGIITKTYETDVNPHEDLDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCHGIFLRRPQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER +  +    +   L        + +T L    G  L 
Sbjct: 242 GLEERPEQLKFARFMEEALDQQEASFLEAQTGLGKTFGYLLP 283


>gi|51246649|ref|YP_066533.1| ribonuclease D [Desulfotalea psychrophila LSv54]
 gi|50877686|emb|CAG37526.1| related to ribonuclease D [Desulfotalea psychrophila LSv54]
          Length = 374

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 3/73 (4%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D      D +    +   L E L + +   + H++  +  ++       
Sbjct: 40  PQLGLIQIALSDEECYAIDPLSIKDL-SPLGELLADRNTIKILHDAPQDLIIMSQATGAT 98

Query: 88  IPIHRWICTLVLA 100
                   T + A
Sbjct: 99  --PQNIFDTRLAA 109


>gi|807830|dbj|BAA07580.1| DNA polymerase [Pyrodictium occultum]
          Length = 803

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 63/205 (30%), Gaps = 43/205 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  +  D E  S     + G    A D  +I  +    +    L +        +VL+E 
Sbjct: 181 MRLVAFDIEVYS-----RRGSPNPARDPVII-VSLRDSEGKERLIE-AEGHDDRRVLREF 233

Query: 61  LE-----NTDVTIVAHNSY-FERTVL---KACFNLDIPIHRWICTLVLARSNGLP----S 107
           +E     + D+  V +NS  F+   L        + + + R        R    P     
Sbjct: 234 VEYVRAFDPDII-VGYNSNHFDWPYLMERARRLGIKLDVTR--------RVGAEPTTSVY 284

Query: 108 ALKAVGEALKLS---------SQKMEEGKELIARFCKGETHECLYDRNK----PNHREAW 154
              +V   L +            KM+  +E+       +  E +             E  
Sbjct: 285 GHVSVQGRLNVDLYDYAEEMPEIKMKTLEEVAEYLGVMKKSERVIIEWWRIPEYWDDEKK 344

Query: 155 RLFGE-YCKGDVTVTREIFKRLEPL 178
           R   E Y   DV  T  + +++ P 
Sbjct: 345 RQLLERYALDDVRATYGLAEKMLPF 369


>gi|269956679|ref|YP_003326468.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894]
 gi|269305360|gb|ACZ30910.1| 3'-5' exonuclease [Xylanimonas cellulosilytica DSM 15894]
          Length = 420

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 35/131 (26%), Gaps = 24/131 (18%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKA-VGEALKLSSQK 122
           DV  + H +  +   L       +       T + AR  GL    L A V + L L   K
Sbjct: 107 DVEWILHAASQDLPGLAEH---GLRPASVFDTELAARLLGLERVGLAAVVADTLGLGLAK 163

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                                D +       W     Y   DV V  E+   L    +  
Sbjct: 164 EHS----------------AVDWSTRPLPVDW---LRYAALDVEVLGEVRDVLAERLADA 204

Query: 183 QELWYLDQTIN 193
            +  +  Q   
Sbjct: 205 GKSEWAAQEFE 215


>gi|114321155|ref|YP_742838.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227549|gb|ABI57348.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 729

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 41/154 (26%), Gaps = 48/154 (31%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FG------FDDH-------PVELWD- 46
             +  D ET              AE   ++  A          D         P      
Sbjct: 535 NYVVFDTETTGLSP---------AEGDEIVSIAGVRMVNGRLLDGERFEQLVNPGRTIPR 585

Query: 47  ---CVHD------------PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI 88
                H               +       + ++   +VAHN+ F+   ++       +  
Sbjct: 586 SSILFHGIHDTTVADKPRIETVLPRFHTFVGDS--VLVAHNAAFDMKFIRLKERRCGVRF 643

Query: 89  PIHRWICTLVLA-RSNG--LPSALKAVGEALKLS 119
             +  + TL+L+   +       L+A+   L + 
Sbjct: 644 D-NPVLDTLLLSVFLHDHTADHTLEAIAARLGVE 676


>gi|89094008|ref|ZP_01166952.1| ribonuclease D [Oceanospirillum sp. MED92]
 gi|89081682|gb|EAR60910.1| ribonuclease D [Oceanospirillum sp. MED92]
          Length = 397

 Score = 45.1 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 51/194 (26%), Gaps = 40/194 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T  P+                 L     DD    L D +        L 
Sbjct: 41  IALDTEFQRVDTFYPLPG---------------LIQVA-DDQACYLIDPLEISDF-SSLS 83

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
              ++  V  V H +  +  +      +         T + A       ++         
Sbjct: 84  TLFKDEGVVKVMHAATEDLELF--HKEIGALPVPLFDTQIAAALINWGFSM--------- 132

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             Q+M E   L  +  K ET      R   + +E       Y   DV     I++     
Sbjct: 133 GLQRMLE-SCLSVQLEKHETTSNWLQRPLTSSQEK------YAALDVAYLPAIYEIQRQE 185

Query: 179 SSKEQELWYLDQTI 192
                   +++Q  
Sbjct: 186 LLSRGHFHWVEQEC 199


>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
 gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
 gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH187]
 gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIE 556


>gi|153840116|ref|ZP_01992783.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
 gi|149746274|gb|EDM57352.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
          Length = 341

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 19/155 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++  V  V H    +  V +  F         + T
Sbjct: 63  FDGKHLSLIDPTELTDMTS-FIELLKDASVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 119

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G                  +  G   +     G   +    R     R   + 
Sbjct: 120 QLMAAFLG----------------HGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQK 163

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
             +Y   DV     ++++L    ++      + Q 
Sbjct: 164 QLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQE 198


>gi|145352778|ref|XP_001420714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580949|gb|ABO99007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 176

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 47/179 (26%), Gaps = 31/179 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E             +  +    +       +    +        +   L +A 
Sbjct: 27  KEFAVDLE---------HHSYRSFKGFTCL-MQISTRERDFVVDVLALRSHVRDALGKAF 76

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS-S 120
            + D   V H +  +   L+  F + +       T   AR   LPS  K +   L     
Sbjct: 77  ADADKLKVMHGADNDVQWLQKDFGMFVSC--LFDTGQAARVLELPS--KGLAYLLHHYCG 132

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K  +  +L     +  T                    EY +GD      +  RL+   
Sbjct: 133 IKANKRFQLADWRLRPLTK----------------EMVEYARGDTHHLLYVHDRLKEAL 175


>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIE 556


>gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames]
 gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne]
 gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L]
 gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066]
 gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055]
 gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum]
 gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94]
 gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Ames]
 gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. Sterne]
 gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
 gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0488]
 gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0389]
 gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0465]
 gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis Tsiankovskii-I]
 gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus NVH0597-99]
 gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH820]
 gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. CDC 684]
 gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0248]
 gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
           str. CI]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIE 556


>gi|326795603|ref|YP_004313423.1| ribonuclease D [Marinomonas mediterranea MMB-1]
 gi|326546367|gb|ADZ91587.1| ribonuclease D [Marinomonas mediterranea MMB-1]
          Length = 383

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 52/194 (26%), Gaps = 36/194 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKE 59
             + +D E      L +             L     +     L D      + +   LK+
Sbjct: 30  NVIAVDTE-----FLRRTTYYPITG-----LIQIS-EGEKAVLID---PQTITEWAPLKD 75

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV-LARSNGLPSALKAVGEALKL 118
            + N DV  V H    +  V        +    +  T +  A +NG              
Sbjct: 76  LMVNLDVMKVFHACSEDLDVFDRLLG--VLPTPFYDTQIGEAYANG-------------- 119

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             Q      +LI  +   E  +     +             Y   DV    +++ +   +
Sbjct: 120 --QWSVSYVKLIQAYLSIEVAKDETRSDWTVRPL-TEAQKRYAALDVVYLAKVYPQQIEM 176

Query: 179 SSKEQELWYLDQTI 192
             K+  L +  +  
Sbjct: 177 LQKKNMLDWALEDC 190


>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIE 556


>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
 gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIE 556


>gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
 gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9842]
 gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus W]
 gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIE 556


>gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
 gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B]
 gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0442]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINIGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIE 556


>gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
 gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North
           America USA6153]
 gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0193]
 gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           anthracis str. A0174]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIE 556


>gi|260901199|ref|ZP_05909594.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
 gi|308106837|gb|EFO44377.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
          Length = 354

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 19/155 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++  V  V H    +  V +  F         + T
Sbjct: 63  FDGKHLSLIDPTELTDMTS-FIELLKDASVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 119

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G                  +  G   +     G   +    R     R   + 
Sbjct: 120 QLMAAFLG----------------HGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQK 163

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
             +Y   DV     ++++L    ++      + Q 
Sbjct: 164 QLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQE 198


>gi|119505873|ref|ZP_01627938.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
 gi|119458301|gb|EAW39411.1| ribonuclease D [marine gamma proteobacterium HTCC2080]
          Length = 380

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 7/106 (6%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             V L           L     D   P  L++    TD+  + H++  +  V +      
Sbjct: 45  PEVALIQLAAAGQCWLLDPLTLDDTQP--LQKLFRQTDLIKILHSASEDLEVFERWLG-- 100

Query: 88  IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELI 130
           +     I T   A   GL   L     V + L +   K E   + +
Sbjct: 101 VLPRPMIDTQKAAAMLGLGFGLSYRDLVHDLLSIDVAKDETQSDWL 146


>gi|42525158|ref|NP_970538.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
 gi|39577369|emb|CAE81192.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
          Length = 217

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 48/175 (27%), Gaps = 42/175 (24%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW--------------- 45
           M  +  D ET   +     G+ +  E   V       D  P  ++               
Sbjct: 13  MRFIAFDLETTGTVP----GVDQIVEIGAVRFI----DGQPEAIFATLIDPLRPIPPGAS 64

Query: 46  -------DCVHDPVMPQVLKEALEN---TDVTIVAHNSYFERTVL----KACFNLDIPIH 91
                  D V    +   +  A       DV  VAHN+ F+   L    K       P  
Sbjct: 65  AVNGISDDMVKGKPLIDTILPAFAEFCGEDVL-VAHNAPFDSQFLIADIKKHET-TAPRG 122

Query: 92  RWICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             + +L +AR          L  + + LK+ +      +E         +     
Sbjct: 123 VILDSLPIARKVFPGLPNYKLGTLVQHLKIPTSNFHRAEEDATYLGHMFSQMMKR 177


>gi|84496254|ref|ZP_00995108.1| putative ribonuclease D [Janibacter sp. HTCC2649]
 gi|84383022|gb|EAP98903.1| putative ribonuclease D [Janibacter sp. HTCC2649]
          Length = 428

 Score = 45.1 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 38/197 (19%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEALENT--DVTIVA 70
           +D  +    +Y +     L     +     L D      + P      L +       + 
Sbjct: 70  VDAERASGYRYGQRAY--LIQVRREGSGTWLIDPIACPDLSP------LNDAIGRAEWIL 121

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKEL 129
           H +  +   L     + +   +   T + AR  GLP   L AV E              L
Sbjct: 122 HAATQDLACLAE---VGLRPVQLFDTELGARLLGLPRVGLAAVVEHY------------L 166

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
                K  +      R  P        +  Y   DV V  E+   +    +++ +  +  
Sbjct: 167 GLALAKEHSAVDWSTRPLP------EPWLRYAALDVEVLTELRNLMGVDLARQDKSEWAR 220

Query: 190 QTIN-----DRGYCVDV 201
           Q        +    VD 
Sbjct: 221 QEFEALLTWEPTERVDP 237


>gi|260895639|ref|ZP_05904135.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
 gi|308088174|gb|EFO37869.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
          Length = 325

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 19/155 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++  V  V H    +  V +  F         + T
Sbjct: 63  FDGKHLSLIDPTELTDMTS-FIELLKDASVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 119

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G                  +  G   +     G   +    R     R   + 
Sbjct: 120 QLMAAFLG----------------HGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQK 163

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
             +Y   DV     ++++L    ++      + Q 
Sbjct: 164 QLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQE 198


>gi|260436194|ref|ZP_05790164.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109]
 gi|260414068|gb|EEX07364.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8109]
          Length = 297

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 42/147 (28%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-------WDCVHDPVM--- 53
           L ID ET     L    +        +    F      V          D      +   
Sbjct: 69  LIIDTETSGLDPLQDQCL-------ELGCILFDVPSRSVLAQQSFLLPVDSNAAEAINRI 121

Query: 54  -------PQVLKEA------LENTDVTIVAHNSYFERTVLKACFNLDIPIH---RWICTL 97
                  PQ  +EA      L +    +VAHN+ F+R      F L +       W+CT+
Sbjct: 122 PAAVTRRPQPWREALVWFEHLLDAADLLVAHNAAFDRQW----FGLGVVPATATPWLCTM 177

Query: 98  --V---LARSNGLPSALKAVGEALKLS 119
             +     R      +++ +  A  + 
Sbjct: 178 EDIRWPAERQLRSRPSVRDLALAYGVP 204


>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
 gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
          Length = 1435

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 418 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 474

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 534

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIE 558


>gi|332311763|gb|EGJ24858.1| DNA polymerase III polC-type [Listeria monocytogenes str. Scott A]
          Length = 1457

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 72/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 440 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 498

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 499 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 556

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     N   H   
Sbjct: 557 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSL 616

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 617 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 676

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 677 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 724


>gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1443

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 44/151 (29%), Gaps = 39/151 (25%)

Query: 4   LFIDFE--TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LW 45
           + +D E  T    D+   G      D  + L A    +  V                 + 
Sbjct: 420 IDVDLEDATYIVFDVETTGFSN-VYDTIIELAAVKIKNGQVIDTFERFSNPHRKLTAKII 478

Query: 46  DCVH-----------DPVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIH 91
           +  H              + +   + + +    +VAHN+ F+   L        +++   
Sbjct: 479 ELTHITDDMLVNAPELSDVIREFHDFIGDG--VVVAHNAAFDLGFLYVAYKNAGIEVRHP 536

Query: 92  RWICTLVLARSNGL---PSALKAVGEALKLS 119
               T+ L+R          LK + +   + 
Sbjct: 537 GI-DTVELSRLVNPGQKSHNLKTLTKKYNIE 566


>gi|223041446|ref|ZP_03611649.1| ribonuclease D [Actinobacillus minor 202]
 gi|223017704|gb|EEF16111.1| ribonuclease D [Actinobacillus minor 202]
          Length = 373

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 57/228 (25%), Gaps = 37/228 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E      +             + L    FD   V L D              L
Sbjct: 27  KAIALDTE-----FIRIRSFY-----PQLGLIQL-FDGEQVSLIDPSSIEDF-SPFIALL 74

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            N DV  V H    +  V +  F         + T V+A       ++            
Sbjct: 75  ANPDVIKVLHACSEDLEVFEYRF--KQLPTPLVDTQVVAGFLNRGISIGFAKLVEHYLHI 132

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           ++++G        +  +                 +  +Y   DV     ++ +++   S+
Sbjct: 133 ELDKGASRTDWLARPLS----------------EIQCQYAAADVFYLLPVYHKMQKELSE 176

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            +    +++      +         L      +  K       L    
Sbjct: 177 NRWQKAVEEECQKFLHR-------KLKDENPDQMYKHIANAWRLEPYQ 217


>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
 gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
 gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus AH1134]
 gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus B4264]
 gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|158289252|ref|XP_311006.4| AGAP000139-PA [Anopheles gambiae str. PEST]
 gi|157018965|gb|EAA06413.4| AGAP000139-PA [Anopheles gambiae str. PEST]
          Length = 1135

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 51/177 (28%), Gaps = 39/177 (22%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL----- 97
           +L     D    + L        V ++ HN+ ++R  ++  + ++    R++ T+     
Sbjct: 230 QLIPLEADTPTDERLHR----PRV-VIGHNASYDRARVREQYWVEPTALRFLDTMSLHVC 284

Query: 98  ---VLAR---SNGLPS-------------ALKAVGEALKLSSQKMEEGKELIARFCKGET 138
              + +                       +L  + +   L        K     F +G  
Sbjct: 285 VSGITSYQRAMLKSSKQLPAEDAGWSEQSSLNNLADVYALYCGGPPLAKSQRDTFVEGT- 343

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-TIND 194
                     + R  +     YC  DV  T  + +RL PL  +           +  
Sbjct: 344 --------LQDVRADFDSLMSYCAADVRATGAVLQRLWPLFRERFPHPATLAGMLEM 392



 Score = 44.3 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 12/169 (7%)

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
              + +   +R+ V A  G +LV AD+   E   +A + G+        T       +  
Sbjct: 763 AQRERVGSELRAMVQAPPGYRLVGADVDSQEL-WIASVLGDAGTGLHGGTPFGWMTLSGT 821

Query: 415 RSFNVAPA----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNS 470
           ++          Q     R   KV+  A  Y  G +  +++       L       K   
Sbjct: 822 KATRTDMHSVTAQAVGISRDHAKVLNYARIYGAGQQFAERLLKQFNPTLTGAEARSKATK 881

Query: 471 APEEWEDAENFC-------RWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                +    +        ++  +     A E L +  AC R      +
Sbjct: 882 MFTLTKGRRTYRLREELRDQYPTQPARSTAYEALGLARACSRPVGELFE 930


>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|15900695|ref|NP_345299.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae TIGR4]
 gi|111658147|ref|ZP_01408844.1| hypothetical protein SpneT_02000672 [Streptococcus pneumoniae
           TIGR4]
 gi|149021672|ref|ZP_01835703.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72]
 gi|14972279|gb|AAK74939.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus pneumoniae TIGR4]
 gi|147930133|gb|EDK81119.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72]
          Length = 816

 Score = 45.1 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLRKKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTEASLEPRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|313837100|gb|EFS74814.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA2]
 gi|314927873|gb|EFS91704.1| 3'-5' exonuclease [Propionibacterium acnes HL044PA1]
 gi|314971873|gb|EFT15971.1| 3'-5' exonuclease [Propionibacterium acnes HL037PA3]
 gi|328907332|gb|EGG27098.1| 3'-5' exonuclease [Propionibacterium sp. P08]
          Length = 412

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 47/407 (11%), Positives = 93/407 (22%), Gaps = 65/407 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD--CVHDPVMPQVLKEAL 61
           + ID E              +       L     +     L D          + L EAL
Sbjct: 38  VAIDTE----------RAHGFRYSPRACLIQLRREGSGTHLVDPLAFSGNTDLKPLAEAL 87

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
                  + H +  +   L      D+       T +  R   LP         + L   
Sbjct: 88  A--GTQWILHAAIQDMPCLAMS---DLRPDDLFDTELAGRLLNLP--------RVGLGP- 133

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-------TREIFKR 174
                  +I  +C     +     +             Y   DV +       T      
Sbjct: 134 -------MIEHYCGVTLLKEHSASDWSRRPLPQDCLV-YAALDVELLTDLRDKTLNDLCA 185

Query: 175 LEPLSSKEQELWYLDQTINDRGYC---VDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
                   QE  +L +   +       VD      ++ + D+      Q    L     +
Sbjct: 186 ARKEQWARQEFAHLVEVAANLPSKEPGVDPKRWRKISHMGDIRSRAGLQLAHDLWLAREN 245

Query: 232 SSRCLEKLKTWLFLETGLHLEDL--TETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVL 289
            +  L+     L  +  L         T    V +              +R +A +   +
Sbjct: 246 LAHDLDIAPGRLLRDEALVTAARHCDRTVNVDVEAVLAIKG-------FHRGQAKKYRPI 298

Query: 290 KLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSH----EELDQIITH 345
            +  +  A     +                   +  P++  R           +   + +
Sbjct: 299 WVEAINHARGVPPKKYPPF--------RELFSTIPSPRSWERHHPEEATRWAAVKPAVNN 350

Query: 346 LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWM 392
           +       P+ L   +   +      E   +   D    +     W 
Sbjct: 351 VAADRDVPPENLCAPAWLKQFAWQPPEDYSVEGIDAFLADLGARPWQ 397


>gi|307730690|ref|YP_003907914.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
 gi|307585225|gb|ADN58623.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
          Length = 383

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
               VAHN+ F+R  L+       +       +CT+ L+R+         L A+ E   L
Sbjct: 92  GKLFVAHNASFDRGFLRGEFRRVGISFDP-DVLCTVRLSRALFPSEKRHGLDALVERHSL 150


>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 1433

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
 gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
          Length = 1433

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
 gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
 gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
 gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
          Length = 1435

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 418 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 474

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 534

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIE 558


>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 1435

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 418 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 474

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 534

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIE 558


>gi|309811312|ref|ZP_07705099.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308434619|gb|EFP58464.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 221

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARS 102
           D      +   L E L      +VAHN+ F+   L         ++P+   +CT  LAR 
Sbjct: 75  DAPGFADLVDELSELL--DGRILVAHNAAFDWAFLAAEARRAGRELPVSERLCTWHLARG 132

Query: 103 NGLP---SALKAVGEA 115
             LP     L  + E 
Sbjct: 133 LELPTDNLRLGTLAEY 148


>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 1433

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165]
 gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S]
 gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161]
 gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900]
 gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003]
 gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165]
 gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900]
 gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1444

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 72/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 486 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     N   H   
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSL 603

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 604 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 663

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 664 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 711


>gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e]
 gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e]
          Length = 1444

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 72/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 486 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     N   H   
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSL 603

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 604 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 663

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 664 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 711


>gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
 gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna BVS033A4]
          Length = 1421

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
           D      +     + + +   T++AHN+ F+   +K       ++ P+  +I TL  AR+
Sbjct: 463 DMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGIN-PVRTYIDTLAFARA 519

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   ++
Sbjct: 520 LEPHLKNHKLDTLTKKYNVN 539


>gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561]
          Length = 1444

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 72/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 486 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     N   H   
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSL 603

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 604 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 663

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 664 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 711


>gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1421

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
           D      +     + + +   T++AHN+ F+   +K       ++ P+  +I TL  AR+
Sbjct: 463 DMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGIN-PVRTYIDTLAFARA 519

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   ++
Sbjct: 520 LEPHLKNHKLDTLTKKYNVN 539


>gi|312131262|ref|YP_003998602.1| 3'-5' exonuclease, polb [Leadbetterella byssophila DSM 17132]
 gi|311907808|gb|ADQ18249.1| 3'-5' exonuclease, PolB [Leadbetterella byssophila DSM 17132]
          Length = 232

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 59/229 (25%), Gaps = 67/229 (29%)

Query: 1   MA-TLFIDFETRSP----IDL-----------------TKCGICKYAEDVCV-----ILF 33
           M   LF+D ET S      DL                  +     Y E   +      + 
Sbjct: 1   MKDILFLDIETVSLTEDFNDLPERLQEHWQKKVQHMKRAEPVEDVYVERAAIFAEFGKII 60

Query: 34  AFGFDDH-----PVELWDCVHDPVMPQVLKEALEN----TDVTIVAHNSY-FERTVLKAC 83
             G          V       +  +    KE +E       + + AHN   F+   L   
Sbjct: 61  CIGVGGETSGDLKVSCLYHEDERTLLLQFKELIERHPAGKRLILCAHNGKEFDFPYLCRR 120

Query: 84  F---NLDIP-------IHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGK 127
                + +P          W      TL + +        +L  +   L +   K     
Sbjct: 121 MIIHGIPLPDVLQMSGKKPWEIPHLDTLEMWKFGDYKHFTSLDLLAAVLGIEGSK----- 175

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + +           +       YC  DV V  ++F+RL 
Sbjct: 176 ---------GSLDGSKVNAAYYLEDRITDIIHYCMEDVVVLAQVFRRLR 215


>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 1433

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988]
          Length = 1444

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 72/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 486 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     N   H   
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSL 603

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 604 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 663

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 664 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 711


>gi|78186872|ref|YP_374915.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273]
 gi|78166774|gb|ABB23872.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273]
          Length = 236

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 41/152 (26%), Gaps = 25/152 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKY------------AEDVCVILFAFGFDDHPVELW---- 45
             +  D ET    DL   G+               A+   V++                 
Sbjct: 48  RMVVFDTETT-GFDLKTDGVISIGAVAINGLSINVADSFEVLVRQDRVGRSEAVAVHGLL 106

Query: 46  --DCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLVL 99
             D        +  +  LE      +VA ++ F+  +L    +    I   +  + T  L
Sbjct: 107 KKDIAGGAGEVEAAEAFLEYIGSSILVAQHASFDVAMLNRILSETFRIRLFNGVVDTASL 166

Query: 100 ARSN--GLPSALKAVGEALKLSSQKMEEGKEL 129
           A+    G    L       +L       G  L
Sbjct: 167 AKRLEKGPYYNLAHKAGEYRLDHLCQRYGIRL 198


>gi|254252965|ref|ZP_04946283.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124895574|gb|EAY69454.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 375

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 22/136 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWD------------CVHD 50
           +F+D ET                +V  +  + +    +P +                V D
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEVGPLGVSTWTTLVNPGQSIPPFIQQLTGISDAMVRD 75

Query: 51  PVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL 105
                 L  AL         VAHN+ F+R  L+A F            +CT+ L+R+   
Sbjct: 76  APSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERAGYAFNP-DVLCTVRLSRALFP 134

Query: 106 ---PSALKAVGEALKL 118
                 L A+ E   L
Sbjct: 135 REARHGLDALIERHGL 150


>gi|309378712|emb|CBX22662.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 50/186 (26%), Gaps = 34/186 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF--AFGFDDHPVELWDCVHDPVMPQVL-- 57
             + +D ET     L   G  +  E   + +        +  + +      P     +  
Sbjct: 4   RQIILDTETTG---LYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHG 60

Query: 58  --KEALENTDVT-----------------IVAHNSYFERTVLK---ACFNLDIP---IHR 92
              E LE  +                   ++ HN+ F+   L        L         
Sbjct: 61  LTIEVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCT 120

Query: 93  WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              TL +AR       ++L A+     +   K      LI     GE +  +  R     
Sbjct: 121 VTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLM 180

Query: 151 REAWRL 156
            E  + 
Sbjct: 181 GEDEKE 186


>gi|293392715|ref|ZP_06637034.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera
           DSM 4582]
 gi|291424832|gb|EFE98042.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera
           DSM 4582]
          Length = 245

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 49/186 (26%), Gaps = 43/186 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVINRRLTGRHYHVYVKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-LKEALENTDVTIV------AHNSYFERTVLK---ACFNLDIPI 90
                  + D  +      + + +  +  +       HN+ F+   +         DIP 
Sbjct: 61  EAYGVHGISDEFLADKPTFDQIADEFIEFIRGGELVIHNAAFDIGFMDHEFRMLQQDIPK 120

Query: 91  HRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                    +L++AR         L A+    ++ + K      L+      E +  +  
Sbjct: 121 TETFCAITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTG 180

Query: 145 RNKPNH 150
                 
Sbjct: 181 GQTTMA 186


>gi|157369157|ref|YP_001477146.1| DNA polymerase III subunit epsilon [Serratia proteamaculans 568]
 gi|157320921|gb|ABV40018.1| DNA polymerase III, epsilon subunit [Serratia proteamaculans 568]
          Length = 246

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 49/186 (26%), Gaps = 43/186 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-ALEVINRRPTGRHYHVYIKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-LKEALENTDV------TIVAHNSYFERTVLK---ACFNLDIPI 90
                  + D  +        + +  +       +V HN+ F+   +          IP 
Sbjct: 61  EAYGVHGISDEFLADKPTFAQIADEFIDFIRGGELVIHNAAFDIGFMDHEFRMLQQGIPK 120

Query: 91  HRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
               CT    L++AR         L A+    ++ + K      L+      E +  +  
Sbjct: 121 TDTFCTITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTG 180

Query: 145 RNKPNH 150
                 
Sbjct: 181 GQTSMA 186


>gi|329121817|ref|ZP_08250433.1| exonuclease [Dialister micraerophilus DSM 19965]
 gi|327468090|gb|EGF13578.1| exonuclease [Dialister micraerophilus DSM 19965]
          Length = 195

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 43/142 (30%), Gaps = 25/142 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC---------VILFAFGFDDHPVEL-----WD 46
           M    IDFET        C +     D           +      FD+  + +      D
Sbjct: 1   MKYTAIDFETAFWGKGNACSLGIVISDGSKLTDEWYDLIRPVHLNFDEECIRVNGIHPED 60

Query: 47  CVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVLA 100
               P  P    +   L N  V   AHN+ F+  VL          DI  + W  T+ ++
Sbjct: 61  VKDKPEFPYYWNKISGLLNGTVAF-AHNAPFDFGVLANTIDRYELPDINFY-WGDTVEIS 118

Query: 101 RSN---GLPSALKAVGEALKLS 119
           R          L  V E L   
Sbjct: 119 RILWKKLPNHKLNTVAEFLNFE 140


>gi|260878202|ref|ZP_05890557.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
 gi|308090210|gb|EFO39905.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
          Length = 372

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 19/155 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++  V  V H    +  V +  F         + T
Sbjct: 63  FDGKHLSLIDPTELTDMTS-FIELLKDASVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 119

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G                  +  G   +     G   +    R     R   + 
Sbjct: 120 QLMAAFLG----------------HGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQK 163

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
             +Y   DV     ++++L    ++      + Q 
Sbjct: 164 QLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQE 198


>gi|15902755|ref|NP_358305.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae R6]
 gi|116516668|ref|YP_816199.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae D39]
 gi|15458302|gb|AAK99515.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6]
 gi|116077244|gb|ABJ54964.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae D39]
          Length = 816

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 AQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTEASLEPRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes
           Clip81459]
 gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 1444

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 72/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 486 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     N   H   
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSL 603

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 604 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 663

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 664 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 711


>gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
 gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus capitis SK14]
          Length = 900

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 21/126 (16%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTLVL---ARSNG 104
             +   +K      D   VAHN  F+   +K  FN   +     + + TL L   A    
Sbjct: 76  EDIYDQIK------DCIFVAHNISFDLNFIKNAFNNCDIQFKPKKVMDTLELFKIAFPTD 129

Query: 105 LPSALKAVGEALKLSSQK--------MEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
               L  + +A  +   K            K +I  F K E+      +      +  + 
Sbjct: 130 KSYQLSELAQAHDIPLDKAHRADEDATTTAKLMIKAFKKFESLPLDTQKQLYYLSKNLK- 188

Query: 157 FGEYCK 162
           +  Y  
Sbjct: 189 YDLYNI 194


>gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220]
          Length = 1444

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 72/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 486 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     N   H   
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSL 603

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 604 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 663

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 664 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 711


>gi|152996550|ref|YP_001341385.1| ribonuclease D [Marinomonas sp. MWYL1]
 gi|150837474|gb|ABR71450.1| ribonuclease D [Marinomonas sp. MWYL1]
          Length = 384

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 50/197 (25%), Gaps = 44/197 (22%)

Query: 3   TLFIDFE----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
            + +D E    T     +T              L      D  V +     D   P  L+
Sbjct: 36  VIAVDTEFIRRTTY-FPITG-------------LIQISEGDKAVLIDPLSIDEWEP--LR 79

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEA 115
             + +  V  V H    +  V        +    +  T +         +L   K + E 
Sbjct: 80  NLMVDPSVMKVFHACSEDLDVFDRLLG--VLPTPFYDTQIGEAYASAQWSLSYVKLIHEY 137

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L++   K E   + + R                           Y   DV    +++   
Sbjct: 138 LQIEVAKDETRSDWVQRPLT-------------------DAQKRYAALDVVYLAKVYPMQ 178

Query: 176 EPLSSKEQELWYLDQTI 192
                 +  L ++ +  
Sbjct: 179 IARLEAKNMLGWVMEDC 195


>gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes str. 4b H7858]
 gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL N1-017]
 gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816]
          Length = 1444

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 72/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 486 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 543

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     N   H   
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSL 603

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 604 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 663

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 664 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 711


>gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1487

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 27/142 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYA---EDVCVIL-FAFGFDDH--------------PVELW 45
           +  D ET     +    I   A   E+  ++  ++   +                   + 
Sbjct: 453 VVFDIETTGFSSVKDKIIEIGAVKVENGKIVSRYSTFVNPEVPIPFEITKLTSITDAMVI 512

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +     E + +    +VAHN+ F+   ++       ++  +     T+ LAR 
Sbjct: 513 DAPKIETVLPEFMEYVGDA--VLVAHNAGFDVGFIEENCRRLGMERKLTSV-DTVALARV 569

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                +   L  V + L +S +
Sbjct: 570 LLPTLSRYKLNIVAKTLGISLE 591


>gi|313668102|ref|YP_004048386.1| DNA polymerase III, epsilon chain [Neisseria lactamica ST-640]
 gi|313005564|emb|CBN87000.1| DNA polymerase III, epsilon chain [Neisseria lactamica 020-06]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 48/189 (25%), Gaps = 40/189 (21%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 64  QVLEEK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 PNHREAWRL 156
               E  + 
Sbjct: 178 DLMGEDEKE 186


>gi|302803751|ref|XP_002983628.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
 gi|300148465|gb|EFJ15124.1| hypothetical protein SELMODRAFT_48160 [Selaginella moellendorffii]
          Length = 201

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 41/148 (27%), Gaps = 20/148 (13%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L           L D +      ++L+    N  +  V H +  +   L+   +  I + 
Sbjct: 72  LIQISTYKRD-YLIDAIALHDEMEILRPVFANAAICKVFHGADSDILWLQR--DFHIYVV 128

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T   AR+             L    + +     L+  +C   T++     +     
Sbjct: 129 NLFDT---ARACD----------VLGKPQRSLAY---LLQTYCNISTNKAFQKSDWRQRP 172

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                   Y + D      I ++L    
Sbjct: 173 LP-EDILLYARTDAHFLLYIARKLYSEL 199


>gi|333003670|gb|EGK23206.1| ribonuclease D [Shigella flexneri VA-6]
          Length = 371

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRADWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
 gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
           faecium E980]
          Length = 1450

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
           +VL+  LE +    +VAHN+ F+   L    A + +    +  I TL LAR         
Sbjct: 492 EVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYPQFKRF 551

Query: 108 ALKAVGEALKLSSQ 121
            L  + +   +S +
Sbjct: 552 GLGVLSKKFGVSLE 565


>gi|239832702|ref|ZP_04681031.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
 gi|239824969|gb|EEQ96537.1| DNA polymerase III subunit epsilon [Ochrobactrum intermedium LMG
           3301]
          Length = 353

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  I   FG    P              
Sbjct: 95  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDICATFGALQQPSRPIPADITRITGI 154

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+  F++      W C
Sbjct: 155 TDEMVRGQTIPREKLDALIAEADIIIAHNAGFDRPFLER-FSIAFANKPWAC 205


>gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
 gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
          Length = 1397

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 41/143 (28%), Gaps = 38/143 (26%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-----CVHDPVMPQVLKEA---- 60
           T    DL   G+ K+     +I           ++ D           +P  + E     
Sbjct: 384 TFVVFDLETTGLNKFKN--EIIEIG-AVKVKSGKVIDEFSSFVKPGESIPNKITELTGIT 440

Query: 61  -----------------LE--NTDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLV 98
                            LE  +  +  VAHN+ F+   L+            +  + TL 
Sbjct: 441 NEMVSRAPDIEGVIGDFLEFIDGSIL-VAHNADFDYGFLQVALKKTGQGDISYPVLDTLT 499

Query: 99  LARSNGL---PSALKAVGEALKL 118
           L+R+         L  +   L +
Sbjct: 500 LSRALLPDLSNHKLNTLARHLNV 522


>gi|115350920|ref|YP_772759.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
 gi|115280908|gb|ABI86425.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
          Length = 375

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 22/136 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELW------------DCVHD 50
           +F+D ET                ++  +  + +    +P +              D V D
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVVEIGPLGVSTWTTLVNPGQSIPPFIQQLTGISDDMVRD 75

Query: 51  PVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL 105
                 L   L         VAHN+ F+R  L+A F    +       +CT+ L+R+   
Sbjct: 76  APSFASLAPTLFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFP 134

Query: 106 ---PSALKAVGEALKL 118
                 L A+ E   L
Sbjct: 135 REARHGLDALIERHGL 150


>gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1450

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
           +VL+  LE +    +VAHN+ F+   L    A + +    +  I TL LAR         
Sbjct: 492 EVLRMFLEFSKGTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYPQFKRF 551

Query: 108 ALKAVGEALKLSSQ 121
            L  + +   +S +
Sbjct: 552 GLGVLSKKFGVSLE 565


>gi|114321140|ref|YP_742823.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227534|gb|ABI57333.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 243

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 37/152 (24%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------AFGFDDHPV-------- 42
           M  + +D ET     L      +  E  CV L            +   D  V        
Sbjct: 1   MRQIVLDTETTG---LEWSQGDRVIEIGCVELVDRRPTGNNFHQYLNPDREVPQEAVEVH 57

Query: 43  -----ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-------ACFNLDIPI 90
                 L D      + +   E +  +++  V HN+ F+   L          +      
Sbjct: 58  GITNDFLADKPRFHEVAERFVEYIRGSEL--VIHNAAFDVGFLDYELSRLGRGWGRVEDF 115

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
              + TL+LAR        +L A+ +   + +
Sbjct: 116 ASVLDTLLLARQRHPGQRNSLDALCKRYDVDN 147


>gi|262212235|gb|ACY35734.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +     Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYEFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|300024345|ref|YP_003756956.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526166|gb|ADJ24635.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
          Length = 384

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 50/192 (26%), Gaps = 39/192 (20%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             + +D E     T  P+               + L      +    +        +   
Sbjct: 21  DYVAVDTEFLREQTFWPL---------------LCLIQLAGPEAEAIVDPLAPGLDL-AP 64

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
               + +T    V H +  +  ++       +       + V A   G   ++  V    
Sbjct: 65  FYHLMADTSTVKVFHAARQDIEIV--FLKSGVVPTPVFDSQVAAMVCGFGDSISYVNLV- 121

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                K   G +L     K         R     +        Y   DVT  R++++RL 
Sbjct: 122 -----KKTTGADL----DKSSRFTDWSRRPLSPKQLD------YALADVTYLRDVYQRLR 166

Query: 177 PLSSKEQELWYL 188
               K     +L
Sbjct: 167 QTLDKTGRTPWL 178


>gi|315641337|ref|ZP_07896413.1| exonuclease [Enterococcus italicus DSM 15952]
 gi|315482910|gb|EFU73430.1| exonuclease [Enterococcus italicus DSM 15952]
          Length = 177

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFG-FDDHPVELW-----------DC 47
           M  + +DFET +    + C +      D  ++   +          W           D 
Sbjct: 1   MNFIAMDFETANHQRHSACSLALVMVRDSKIVGEYYSLIQPETSFFWRNIQIHGIKPQDV 60

Query: 48  VHDPVMPQVLKEALE--NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-- 100
              P  P+V +   +  N    I+AHN+ F+  VL      +NL+ P +  + T+  +  
Sbjct: 61  KTAPKFPEVWESIAQYFNPYSLIIAHNAPFDNGVLAGCLDYYNLEQPHYLTLDTVRTSRK 120

Query: 101 -RSNGLPSALKAVGEALKLS 119
              N     L  V   L + 
Sbjct: 121 FYQNLPNHRLNTVCGYLDIP 140


>gi|238854851|ref|ZP_04645181.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3]
 gi|260664138|ref|ZP_05864991.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US]
 gi|282933929|ref|ZP_06339277.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
 gi|313472352|ref|ZP_07812844.1| exonuclease [Lactobacillus jensenii 1153]
 gi|238832641|gb|EEQ24948.1| DNA polymerase III alpha chain [Lactobacillus jensenii 269-3]
 gi|239529790|gb|EEQ68791.1| exonuclease [Lactobacillus jensenii 1153]
 gi|260562024|gb|EEX27993.1| DNA polymerase subunit III alpha [Lactobacillus jensenii SJ-7A-US]
 gi|281302018|gb|EFA94272.1| DNA polymerase III alpha chain [Lactobacillus jensenii 208-1]
          Length = 177

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAEDVCVIL-FAFGFDDHPVELW-----DC 47
           M  + +DFET          + L      K A+    ++     FD   + +      D 
Sbjct: 1   MNFIAMDFETANRHPESACSLALVMVRNNKIADRFYTVINPQMPFDGRNISVHQITPSDV 60

Query: 48  VHDPVMPQVL--KEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
              P M +V    + L    + + AHN+ F+  VLK   A +++  P +  I TL  +R 
Sbjct: 61  KDAPTMAEVWPKIKDLYQPGMLVAAHNAKFDANVLKMSLARYDIAEPHYLVIDTLKTSRL 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V EAL + 
Sbjct: 121 FEPDLPNHKLNTVSEALDVE 140


>gi|161615575|ref|YP_001589540.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364939|gb|ABX68707.1| hypothetical protein SPAB_03350 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 246

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 46/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFNL---DI 88
                  + D  +    K    +          D  +V HN+ F+   +   F L   DI
Sbjct: 64  EAFGVHGIADEFLLD--KPVFADVVDEFLDYIRDAELVIHNASFDIGFMDYEFGLLKRDI 121

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|153939051|ref|YP_001391011.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. Langeland]
 gi|152934947|gb|ABS40445.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. Langeland]
 gi|295319069|gb|ADF99446.1| putative DNA polymerase III, epsilon subunit [Clostridium botulinum
           F str. 230613]
          Length = 195

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 25/122 (20%)

Query: 1   MATLFIDFETRSPID-----LTKCGICKYAEDVCVILFA----FGFD--DHPVELWDCVH 49
           M  +FID ET          LT C           + FA    F  D  +   E      
Sbjct: 1   MKKIFIDTETTGLEPGEIIQLTYCVCDINFRGEEKVFFAKNFFFDVDYIEESAEAIHGFS 60

Query: 50  DPVMP-----QVLKEALEN-----TDVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
              +      +  K+          D   +AHN  F+R           +++     + C
Sbjct: 61  VEKLKILSKGKKFKDLASEISSDLKDGIFIAHNVNFDRKFVTAEFNRLNDMNWIPKEFFC 120

Query: 96  TL 97
           T+
Sbjct: 121 TM 122


>gi|91793373|ref|YP_563024.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
 gi|91715375|gb|ABE55301.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
           OS217]
          Length = 242

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 50/168 (29%), Gaps = 44/168 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF---------------------GFDDH 40
             + +D ET     + + G   Y     +I                           D  
Sbjct: 9   RQIILDTETTG---MNQAGGAIYIGH-RIIEIGCVEVINRRLTGRTYHQYINPGQSIDPE 64

Query: 41  PVELWDCVHDP--------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR 92
            + +     +          + Q   + ++  ++  VAHN+ F+ + +   F++  P   
Sbjct: 65  AIAVHGITDERVANEPRFHQIAQEFIDFIQGAEI--VAHNASFDVSFMDHEFSMLQPRGP 122

Query: 93  -------WICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                   + +L +A+         L A+ +   + + +      L+ 
Sbjct: 123 KTKDITDILDSLAIAKRLHPGQKNNLDALCKRYGIDNSRRTYHGALLD 170


>gi|262212341|gb|ACY35787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YATDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212331|gb|ACY35782.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YATDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212275|gb|ACY35754.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R LA          +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLAHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  G+ +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGRGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|254712763|ref|ZP_05174574.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
 gi|254715832|ref|ZP_05177643.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
 gi|261217593|ref|ZP_05931874.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261320470|ref|ZP_05959667.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
 gi|260922682|gb|EEX89250.1| exonuclease RNase T and DNA polymerase III [Brucella ceti M13/05/1]
 gi|261293160|gb|EEX96656.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M644/93/1]
          Length = 329

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 18/109 (16%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITGITDE 133

Query: 49  --HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                 +P+   +AL      I+AHN+ F+R  L+   ++      W C
Sbjct: 134 MVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWAC 181


>gi|161525206|ref|YP_001580218.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|189350055|ref|YP_001945683.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
           17616]
 gi|160342635|gb|ABX15721.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
           17616]
 gi|189334077|dbj|BAG43147.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
           17616]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 36/162 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTG---LNARSGDRIIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVH 57

Query: 39  DHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E       P   ++  + L+      ++ HN+ F+   L      L +P       
Sbjct: 58  GLTTEF--LSDKPKFAEIAHQILDFVKGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCA 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             I TLV A+        +L A+ +   +S+        L+ 
Sbjct: 116 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLD 157


>gi|325694226|gb|EGD36142.1| ATP-dependent DNA helicase DinG [Streptococcus sanguinis SK150]
          Length = 814

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 71/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L + 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLNDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCHGIFLRRPQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER +  +    +   L        + +T L    G  L 
Sbjct: 242 GLEERPEQLKFARFMEEALDQQEASFLEAQTGLGKTFGYLLP 283


>gi|224049135|ref|XP_002193489.1| PREDICTED: similar to Werner syndrome [Taeniopygia guttata]
          Length = 1223

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 76/281 (27%), Gaps = 38/281 (13%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+               +      +    L+        P+ LK  LE+  +  V     
Sbjct: 80  DIEWPPAYTKGRMAKTAVIQMCVTEDKCYLFHVSSMAGFPKGLKRLLEDETIKKV----- 134

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFC 134
                      + I   +W    +++        LK+  E   ++++K++  +       
Sbjct: 135 ----------GVGIEGDQW---KLMS---DFEIKLKSFVELADVANEKLKCKETWSLNGL 178

Query: 135 KGETHECLYDRNKPNHREAWRLF------GEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
                     +++      W  F        Y   D      ++++L+ +S  +Q+L  +
Sbjct: 179 VKHLFGRQLLKDQSVRCSNWEQFPLNEEQKLYAATDAYAGYIVYEKLKNMSKSDQKLLSV 238

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVER------TKLDQELESLTYGLVSSSRCLEKLKTW 242
            +     G    +A        +           +  Q    +   +  +   L+     
Sbjct: 239 SKDATSEGVKERLASLAEEITDLASHIPDSSGQLENFQRAAEILAKISENISALKTTLLG 298

Query: 243 LFLETGLHLEDLTETT-----CQRVLSSNKKLTPQAIQVFN 278
               +GL        T        VL+   +   Q     N
Sbjct: 299 SGFPSGLERNSGANRTHFVAKSANVLAQKAECAEQPEGDLN 339


>gi|254419681|ref|ZP_05033405.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
 gi|196185858|gb|EDX80834.1| DNA polymerase III, epsilon subunit [Brevundimonas sp. BAL3]
          Length = 241

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 30/157 (19%)

Query: 2   ATLFIDFETRSPID-----LTKCGICKYAE------------DVCVILF---AFGFDD-H 40
             + +D ET          L + G  +  +            +    L    A       
Sbjct: 3   REIVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPE-RLIPPDAIRVHGIT 61

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIH-RWICT 96
             ++ D      +   L E + +    ++AHN+ F+R  +          I    RWI T
Sbjct: 62  DDKVKDAPKFHEIADDLIEFIGDA--PMIAHNAGFDRNFIDFEYKLCGRPITGETRWIDT 119

Query: 97  --LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
             L  AR  G+P++L A+ +  K+S  +      LI 
Sbjct: 120 LKLAQARFPGMPNSLDALCKRFKVSLVERTLHGALID 156


>gi|118594819|ref|ZP_01552166.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Methylophilales bacterium HTCC2181]
 gi|118440597|gb|EAV47224.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Methylophilales bacterium HTCC2181]
          Length = 222

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 49/200 (24%), Gaps = 42/200 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE-----------------------DV---CVILFA 34
           M  +F+D ET          + + A                        D     V    
Sbjct: 1   MRQIFLDTETTGLDPNQGHRVIEIAAIEFNNRQATSNRFHFYVNPQREIDAAAQEVHGIT 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIHRW 93
             F +      D   D         A  N    ++ HN+ F+   L      + +     
Sbjct: 61  LDFLNDKPLFVDIAAD-------FIAFINGSELVI-HNAPFDVGFLNMELGKIGMEKLES 112

Query: 94  ICTLVL-----ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            C  ++     A+        +L A+  A  + +        L+     GE +  +    
Sbjct: 113 YCDGIMDSLKFAKEIRPGQRNSLDALCRAFDVDNSTRSLHGALLDAQLLGEVYIQMTRGQ 172

Query: 147 KPNHREAWRLFGEYCKGDVT 166
           +           +     V 
Sbjct: 173 EAFTINFEEDSSKAALQSVD 192


>gi|315504521|ref|YP_004083408.1| DNA polymerase iii, epsilon subunit [Micromonospora sp. L5]
 gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5]
          Length = 584

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 28/147 (19%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH--------------PVELW 45
           + +D ET         +T+ G  K      + + A   +                   L 
Sbjct: 33  VVVDLETTGGAPDGGGITEIGAVKVRGGEELGVLATLVNPGVPIPPFITVLTGITQAMLL 92

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA-R 101
                  +     E + +    +VAHN+ ++   LKA         P  R + T  LA R
Sbjct: 93  PAPPIEQVLPSFLEFISDA--VLVAHNAPYDVGFLKAACAKHGYRWPNPRVLDTAALARR 150

Query: 102 SNG----LPSALKAVGEALKLSSQKME 124
                      L  +    + ++Q   
Sbjct: 151 VLTRDEVPNRKLGTLAAYFRTATQPTH 177


>gi|283770528|ref|ZP_06343420.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus
           H19]
 gi|283460675|gb|EFC07765.1| ATP-dependent helicase dinG [Staphylococcus aureus subsp. aureus
           H19]
          Length = 897

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 85/280 (30%), Gaps = 33/280 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV---LARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     + I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPN---------HREAWRLFGEY 160
           +                K +I  F K E       +             +   + +  +Y
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQY 202

Query: 161 CKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALAHTLNQIVDVERTK 217
               +  + E F           ++     +    +     +D        Q + +  T 
Sbjct: 203 DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAIDQLGLTYRPQQLYLAETI 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKLTPQA 273
           LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K  P  
Sbjct: 263 LDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAM 322

Query: 274 IQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            +  N ++     +S    ++  L+  +  D      +  
Sbjct: 323 NEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNI 362


>gi|187733914|ref|YP_001880596.1| ribonuclease D [Shigella boydii CDC 3083-94]
 gi|187430906|gb|ACD10180.1| ribonuclease D [Shigella boydii CDC 3083-94]
          Length = 375

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +L+   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILSAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|156089519|ref|XP_001612166.1| 3'-5' exonuclease domain containing protein [Babesia bovis]
 gi|154799420|gb|EDO08598.1| 3'-5' exonuclease domain containing protein [Babesia bovis]
          Length = 230

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 44/125 (35%), Gaps = 19/125 (15%)

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
           +P  +   L + D+  ++H +  +  ++   F   +    ++              L++V
Sbjct: 105 LPSSVSHILSDPDILKISHGAPSDMRLMYRHFG--VRSRSFVD-------------LQSV 149

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E L+L    ++     + +   G         +     E  +   +Y   D  VT   F
Sbjct: 150 CEELQLRPCSLKS----VVQRVLGLRLSKKQQCSNWEAAELSQQQIKYAATDAWVTLAAF 205

Query: 173 KRLEP 177
            +L+P
Sbjct: 206 LKLKP 210


>gi|239616933|ref|YP_002940255.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505764|gb|ACR79251.1| DNA polymerase III, epsilon subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 180

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 39/149 (26%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M  + ID ET            K AE + +        D  +   +  ++ + P+     
Sbjct: 1   MEFVVIDTETTGSSP------HKGAELIEIAGV--VVRDWEIIYEESFNELIKPKRHVPI 52

Query: 61  ------------LENT---------------DVTIVAHNSYFERTVLKACF---NLDIPI 90
                       LE+                D  +V  N+ F+ + L        +    
Sbjct: 53  SITMITGINNLMLEDKLPIEIVLPRFYDFVRDRVLVIQNAPFDLSFLDYFGKKIGIGELP 112

Query: 91  HRWICTLVLARSNGLP-SALKAVGEALKL 118
           + ++ T+ L+RS       L  +   L +
Sbjct: 113 NPFVDTISLSRSLFRGRHNLDIILARLGI 141


>gi|28897645|ref|NP_797250.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
 gi|28805858|dbj|BAC59134.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
 gi|328473373|gb|EGF44221.1| ribonuclease D [Vibrio parahaemolyticus 10329]
          Length = 388

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 19/155 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++  V  V H    +  V +  F         + T
Sbjct: 63  FDGKHLSLIDPTELTDMTS-FIELLKDASVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 119

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G                  +  G   +     G   +    R     R   + 
Sbjct: 120 QLMAAFLG----------------HGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQK 163

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
             +Y   DV     ++++L    ++      + Q 
Sbjct: 164 QLDYAAADVHYLLPLYEKLLDKVTEAGWWEAVQQE 198


>gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. D5]
 gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           sp. D5]
          Length = 1498

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 31/145 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE---DVCVI-------------LFAF----GFDDHPV 42
            +  D ET     +    I   A    +  ++              F         D  V
Sbjct: 461 YIVFDLETTGFSAIKDKIIEIGAVKVVNGEIVDRFSTFVNPKRPIPFQITQLTSITDEMV 520

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
             +       +     E  ++    +VAHN+ F+   ++      +++ P   ++ T+ +
Sbjct: 521 MGYP--DIETILPQFLEFAKDG--VLVAHNAGFDVGFIEQNCRYQDIE-PHFVYVDTVAM 575

Query: 100 ARSNGLPSA---LKAVGEALKLSSQ 121
           AR      +   L  V +AL +S +
Sbjct: 576 ARVLLPTLSKYKLNVVAKALGISLE 600


>gi|229472195|gb|ACQ72612.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       + G  L++ A   K     + + +A + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKI---GHSYGKLLSSKAAKKKGKEIRQAYIEAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + E   + +           ++ 
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRKII 145


>gi|221201955|ref|ZP_03574991.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
 gi|221204915|ref|ZP_03577932.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221213892|ref|ZP_03586865.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221166069|gb|EED98542.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
 gi|221175772|gb|EEE08202.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
 gi|221178038|gb|EEE10449.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
           CGD2M]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 47/162 (29%), Gaps = 36/162 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFD 38
           M  + +D ET     L      +  E  CV L                       A    
Sbjct: 1   MRQIILDTETTG---LNARTGDRIIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVH 57

Query: 39  DHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL-KACFNLDIPI-----H 91
               E       P   ++  + L+      ++ HN+ F+   L      L +P       
Sbjct: 58  GLTTEF--LSDKPKFAEIAHQILDFVKGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCA 115

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             I TLV A+        +L A+ +   +S+        L+ 
Sbjct: 116 GVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLD 157


>gi|29374711|ref|NP_813863.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227555735|ref|ZP_03985782.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256761903|ref|ZP_05502483.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|29342169|gb|AAO79935.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis V583]
 gi|227175140|gb|EEI56112.1| DNA polymerase III, epsilon subunit [Enterococcus faecalis HH22]
 gi|256683154|gb|EEU22849.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|315573941|gb|EFU86132.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309B]
 gi|315581892|gb|EFU94083.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecalis TX0309A]
          Length = 289

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 38/120 (31%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFG--FDDHPVELWD-CVHDPVMPQVL--- 57
           +  D ET             + +D  VI  +     D   V+ +D  V+   +P  +   
Sbjct: 9   IAFDIETTGLD---------FHQDA-VIQISAARYVDGIEVDYFDTLVNSDYIPDEITKL 58

Query: 58  -----------------KEALEN--TDVTIVAHNSY-FERTVLKACFNLDI-PIHRWICT 96
                               L +   D  +V HN   F+   LK     +I   H    T
Sbjct: 59  TGITNDQVLNAPTLDEVMPYLFDYLGDTILVGHNIKSFDFPFLK-AKGYNIAEGHEIYDT 117


>gi|320183816|gb|EFW58649.1| Ribonuclease D [Shigella flexneri CDC 796-83]
 gi|332096395|gb|EGJ01392.1| ribonuclease D [Shigella boydii 3594-74]
          Length = 371

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +L+   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILSAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|270156747|ref|ZP_06185404.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
 gi|289164806|ref|YP_003454944.1| DNA polymerase III, epsilon chain [Legionella longbeachae NSW150]
 gi|269988772|gb|EEZ95026.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
 gi|288857979|emb|CBJ11839.1| putative DNA polymerase III, epsilon chain [Legionella longbeachae
           NSW150]
          Length = 233

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 52/189 (27%), Gaps = 45/189 (23%)

Query: 1   MATLFIDFETRS------------------PIDLTKCGICKYAEDVCVILFAFGFDDHPV 42
           M  + +D ET                       LT      Y     ++       D   
Sbjct: 1   MRQVVLDTETTGIGHEHGHRVIEIGCVELIDRKLTGNHFHVYLNPQRLV-------DEGA 53

Query: 43  ELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKA-----CFNLDI 88
                + +  +    K    +         +   ++ HN+ F+   L +      +N  +
Sbjct: 54  FRVHGISNEFLQD--KPLFADVAEKFWRFISGAELIIHNAPFDVGFLNSELQLINWNKKL 111

Query: 89  PIH-RWICTLVLAR--SNGLPSALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYD 144
            ++ +   TLVLAR    G  ++L A+ +   +    +   G  L A             
Sbjct: 112 EVYCKITDTLVLAREKYPGQRNSLDALCKRYGIDHFNRELHGALLDAEILAFVYLAMTGG 171

Query: 145 RNKPNHREA 153
           +        
Sbjct: 172 QTSLFAEVE 180


>gi|95930297|ref|ZP_01313034.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95133549|gb|EAT15211.1| DNA polymerase III, epsilon subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 193

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRWICTLVL 99
           L D      +       + ++ +T   H+  F+  +L          ++    W+ T++L
Sbjct: 65  LVDKPSIGEVLPEFMTFIGDSMIT--GHHINFDLKMLDRHLRENYDCNLEGAPWLDTMLL 122

Query: 100 ARSN---GLPSALKAVGEALKLS 119
            +        + L  +     + 
Sbjct: 123 HKLVMENNTSTQLDDLLNVYCID 145


>gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 1482

 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 12/129 (9%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
           D        + + E +++    +VAHN+ F+ T L             +  I TL ++R 
Sbjct: 497 DKPSIEQAFKQINEIIKDA--ILVAHNANFDFTFLSYWSEKLGYGKLENTIIDTLTISRI 554

Query: 103 NGL---PSALKAVGEALKLSSQKME----EGKELIARFCKGETHECLYDRNKPNHREAWR 155
                    L ++ + + +S         +    I         +    + K      W 
Sbjct: 555 IYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDETRKKIKIITDSDWN 614

Query: 156 LFGEYCKGD 164
                   D
Sbjct: 615 KIDPINYAD 623


>gi|194246482|ref|YP_002004121.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193806839|emb|CAP18268.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1522

 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 96/320 (30%), Gaps = 57/320 (17%)

Query: 1   MATLFIDFETR--SPIDLTKCGICKYAEDVCVILFAFG--FDDHPVELWDCVHDPVMPQV 56
           M  +  D ET   S +      I  +     +++  F    +       D   +  +   
Sbjct: 414 MEYVVFDIETTGFSKVRDKIIEISGFKIKNNIVIDQFYSLVNPE----IDLPENIYLLTK 469

Query: 57  LK-EALEN--------TDVTI-------VAHNSYFERTVL---KACFNLDIPIHRWICTL 97
           +K E L+N         D          VAHN+ F+ + +       N+  P+   I TL
Sbjct: 470 IKNETLKNAPKILQVLPDFLKFIKNTCLVAHNASFDVSFIFEKSKQLNISFPLLPVIDTL 529

Query: 98  VLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            L++          +LK +    K+   K+EE           +    ++ +        
Sbjct: 530 ALSQYYFSSFMKFFSLKRLAAKFKV---KLEEHH---RAKDDAKATTEIFMKILNLLENE 583

Query: 154 WRLFGEYCKGDV-----TVTREIFKRLEPLSSKEQELWYL---DQTINDRGYCVDVALAH 205
           +++F  Y  GD        T +I   +            L         +   V  ++ H
Sbjct: 584 YKVFTFYDLGDTLSSKYERTYDINVLVSNQIGYRNLFKVLSDALTNNFYKKPRVLKSVLH 643

Query: 206 TLNQ------------IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
              +            + ++      + L+              +    L  E G+  + 
Sbjct: 644 QYREGLLIGSGCYNGNVFEIALNDDLESLKKAISFYDYIEVQPPQSYNHLIYELGIEGKK 703

Query: 254 LTETTCQRVLSSNKKLTPQA 273
           + E T  +++  +KK     
Sbjct: 704 IIEQTILKIIQESKKQKKII 723


>gi|159904464|ref|YP_001548126.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6]
 gi|159885957|gb|ABX00894.1| hypothetical protein MmarC6_0068 [Methanococcus maripaludis C6]
          Length = 153

 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 13/94 (13%)

Query: 2  ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            + +D ET     LT            +I       +  V+         M +   + +
Sbjct: 3  NIIVLDTETTGLNPLTD----------RIITIGLWHVNKFVKFVSNDEKE-MLENFWKFI 51

Query: 62 ENTDVTI-VAHNSYFERTVLK-ACFNLDIPIHRW 93
             +++  +  N  F+ T LK       I I  +
Sbjct: 52 SEHEISKLIGFNINFDWTFLKLRSMKYGIKIRYF 85


>gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinnamea P4]
 gi|319435472|gb|EFV90709.1| DNA polymerase III [Dietzia cinnamea P4]
          Length = 313

 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 25/148 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYA----EDVCVI-----LFAFGFDDHPVELWDCVHD---- 50
           + +D ET          +   A    +D  V+     L   G D  PV +          
Sbjct: 5   VVVDVETSGMTPAVDRVLSVAAVVIGDDGEVVEEFATLLNPGVDPGPVHVHGLTPALLAG 64

Query: 51  ----PVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTL-VLARS 102
                 +   L   L     T+VAHN+ F+ + L        L  P+ R++CTL    R 
Sbjct: 65  KPRFSDVAAELGRVL--DGRTVVAHNAAFDASFLAAEARRAGLAPPLERFVCTLDFAGRL 122

Query: 103 NGLPSALK--AVGEALKLSSQKMEEGKE 128
           +   + LK   +     +  +   +  +
Sbjct: 123 HLSTADLKLSTLAAHFGVRQRAAHDAHD 150


>gi|116492274|ref|YP_804009.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Pediococcus pentosaceus ATCC 25745]
 gi|116102424|gb|ABJ67567.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Pediococcus pentosaceus ATCC 25745]
          Length = 178

 Score = 44.7 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 21/142 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVI---LFA-------FGFDDHPVELW---DC 47
           M  + +DFET +P   + C I        VI   L++       F + +  V      D 
Sbjct: 1   MNFIAMDFETAAPTRASACSIALTVVQNDVITDELYSLINPETEFNWRNVQVHGIHQADV 60

Query: 48  VHDPVMPQ--VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
              P  P+   + +     D  +VAHN+ F+ +VLK     + ++   ++ + TL  ++S
Sbjct: 61  SDAPTFPELWPVVKQFFTPDKLVVAHNATFDNSVLKKTLERYQINRLPYQTLDTLRTSKS 120

Query: 103 NGL---PSALKAVGEALKLSSQ 121
                    L  + + L +  Q
Sbjct: 121 FYPDYTNHKLNTICDNLGIDLQ 142


>gi|262375943|ref|ZP_06069174.1| ribonuclease HI [Acinetobacter lwoffii SH145]
 gi|262309037|gb|EEY90169.1| ribonuclease HI [Acinetobacter lwoffii SH145]
          Length = 458

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 32/224 (14%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDDHPVE 43
             L +D ET        D              LT   I  Y      +  +         
Sbjct: 231 RQLILDTETTGFYYQDGDRIIEVGALEMINRKLTGSSIHIYINPKTPVGDSVNV---HGI 287

Query: 44  LWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDI--PIHRWICT 96
             + + D  + + + + L +      I+AHN+ F+   L              +     T
Sbjct: 288 TDEFLQDKPLFEEISQVLFDYLHGAEIIAHNATFDMNFLDMEFKRAGFKALSEVCDVTDT 347

Query: 97  LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           L LA+S       +L A+    ++  +       L+      + +  +         +A 
Sbjct: 348 LALAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILSDVYLAMTGGQVSFDIDAL 407

Query: 155 RLFGEYCKG--DVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
               +         V  E+   L      ++   ++ Q     G
Sbjct: 408 SQSEDQNSRSGMARVEIELPVILPSEQELQEHENWVKQFEEKHG 451


>gi|262212197|gb|ACY35715.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  +  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLFGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLPEAIKKASERGFIKALDGRKII 145


>gi|170770112|ref|ZP_02904565.1| ribonuclease D [Escherichia albertii TW07627]
 gi|170121069|gb|EDS90000.1| ribonuclease D [Escherichia albertii TW07627]
          Length = 375

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 50/200 (25%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           S   +++ +       +  T                    EY   DV     I  +L   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVRYLLPITTKLMAE 169

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 170 TEASGWLPAALDECRLMQIR 189


>gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
          Length = 970

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIE 556


>gi|262212283|gb|ACY35758.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKPGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
 gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus ATCC 10987]
          Length = 970

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIE 556


>gi|218768496|ref|YP_002343008.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
 gi|254805280|ref|YP_003083501.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha14]
 gi|121052504|emb|CAM08843.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
 gi|254668822|emb|CBA06831.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           alpha14]
 gi|319410744|emb|CBY91127.1| DNA polymerase III epsilon subunit [Neisseria meningitidis WUE
           2594]
 gi|325127153|gb|EGC50103.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 64  EVLEGK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 P 148
            
Sbjct: 178 D 178


>gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 970

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 533 LARFLFPEMKNHRLNTLCKKMDIE 556


>gi|314055097|ref|YP_004063435.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus
           tauri virus 2]
 gi|313574988|emb|CBI70001.1| putative exonuclease RNase T and DNA polymerase III [Ostreococcus
           tauri virus 2]
          Length = 447

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 37/132 (28%)

Query: 1   MATLFIDFETR---------------------------SPIDLTKCGICKYAEDVCVILF 33
           M  +  DFET                            S    ++ G      D  +   
Sbjct: 5   MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPN 64

Query: 34  AFGFDDHPVELWDCVH------DPVMPQVLKEALEN---TDVTIVAHNSYFERTVL-KAC 83
            F   +  + +    +          P V K+ +E       T+VAHN+ F+ +VL    
Sbjct: 65  GFQIGEESIAIHGISNEKALSEGRPFPDVFKDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124

Query: 84  FNLDIPIHRWIC 95
               IP+ +   
Sbjct: 125 LRHGIPLEQIDD 136


>gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
          Length = 972

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 418 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGE--IIDRFESFANPHQPLSATIIELTGI 474

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L+   +  I TL 
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLE 534

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + + + 
Sbjct: 535 LARFLFPEMKNHRLNTLCKKMDIE 558


>gi|320586879|gb|EFW99542.1| DNA polymerase gamma [Grosmannia clavigera kw1407]
          Length = 1168

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 53/194 (27%), Gaps = 11/194 (5%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ V A  G   V AD+   E
Sbjct: 669 PQVIPMGTVTRRAVENTWLTASNAKKN------RVGSELKAMVKAPPGYSFVGADVDSEE 722

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   ++        T       R   KV      Y
Sbjct: 723 L-WIASVVGDATFGLHGGNAIGFMTLEGTKAAGTDLHSRTASILGITRNDAKVFNYGRIY 781

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G +   ++      +L+    +          +      + + +        + F+  
Sbjct: 782 GAGLRFAAQLLRQFNPSLSEAETVSIATKLYLATKGTRTNRKALCKRPFWRGGTESFVFN 841

Query: 502 ACERVKKAWRQKHS 515
             E   +  R +  
Sbjct: 842 RLEEFAEQERPRTP 855


>gi|85000709|ref|XP_955073.1| 3'-5' exonuclease [Theileria annulata strain Ankara]
 gi|65303219|emb|CAI75597.1| 3'-5' exonuclease, putative [Theileria annulata]
          Length = 790

 Score = 44.7 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 59/225 (26%), Gaps = 34/225 (15%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66
           D ET                   + L           + D          L     +  +
Sbjct: 507 DTETY---------------RGFICLLQLST-PQENYIIDPFKIFGKMNKLNRLTTDPKI 550

Query: 67  TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SAL-KAVGEALKLSSQKME 124
             + H +  +   L+  FN+ +       T   A    LP  +L K V +   +   K  
Sbjct: 551 LKIMHGACNDVIWLQRDFNIFV--VNLFDTREAAIVLNLPEQSLAKLVQKYFNIKLNKRF 608

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE-PLSSKEQ 183
           +    I+ + K         R             +Y   D      ++  L+  + SKE 
Sbjct: 609 Q----ISNWSKSYNCLNCGIRPLD------DEMLDYACCDSHYLIPLYNTLKDEILSKED 658

Query: 184 ELWYLDQTINDRGYCVDVALAH---TLNQIVDVERTKLDQELESL 225
               + Q +N+               + +       +   ++  L
Sbjct: 659 GRVKIIQVMNNGRETCLKQYVDRGPEIYKKFKSISKRHKIKIPEL 703


>gi|213964373|ref|ZP_03392587.1| exonuclease [Capnocytophaga sputigena Capno]
 gi|213952985|gb|EEB64353.1| exonuclease [Capnocytophaga sputigena Capno]
          Length = 164

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 25/139 (17%)

Query: 4   LFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LFA-----FGFDDHPVE---LWDCVH 49
           + +DFET +    + C I   + E+  ++     L       + + +  V     +D  +
Sbjct: 5   VALDFETANQYRSSVCSIGLVFVENNEIVDTYYQLIKPAPNFYSYFNTQVHGLSQYDTEN 64

Query: 50  DPVMPQVLKEALENTDVT---IVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
            P+ P+V  E L    +    +VAHNS F+   L+   A + L    + + CTL  AR +
Sbjct: 65  APLFPEVWTEIL--PKIKDLPLVAHNSMFDEGCLREVLAYYALPQHTNPFFCTLRAARKS 122

Query: 104 GL---PSALKAVGEALKLS 119
                   L  V       
Sbjct: 123 LPQLVNHKLNTVSAYFGFD 141


>gi|184200651|ref|YP_001854858.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
 gi|183580881|dbj|BAG29352.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
           DC2201]
          Length = 193

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 35/147 (23%)

Query: 5   FIDFET--RSPIDLTKCGICKYAEDVCVI--LFAF--------GFDDHPVELWDCVHDP- 51
            IDFET  RS       G+ +   D  V+   ++          F+   V +        
Sbjct: 7   AIDFETANRSLASACALGVVR-VRDGQVVDTRYSLIRPPAGHDAFEPGNVRIHGIRPAEV 65

Query: 52  ---VMPQVLKEAL------ENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL-- 97
                   L + +      E+ D  +VAHN+ F+  V+K        D     + CTL  
Sbjct: 66  THAPTFDRLWDWMCENITPEDPDAVLVAHNAVFDTGVVKAANRACGRDPRPWDYACTLRL 125

Query: 98  ------VLARSNGLPSALKAVGEALKL 118
                 + + +    ++  A  E    
Sbjct: 126 ARAAYTLRSYAL-PSASRAAGAEVEDH 151


>gi|329940178|ref|ZP_08289460.1| ribonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301004|gb|EGG44900.1| ribonuclease [Streptomyces griseoaurantiacus M045]
          Length = 428

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 29/181 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           +D  +    +Y +   ++      +      +               A+ + +   V H 
Sbjct: 68  VDAERASGYRYGQRAYLV--QLRREGAGSALIDPVACPD--LSAFGAAIADAE--WVLHA 121

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L+    + +   R   T +  R  G P   L A+ E   +    +E+G   + 
Sbjct: 122 ATQDLPCLRE---IGMRPTRLFDTELAGRLAGFPRVGLGAMVE--NVLGFVLEKGHSAVD 176

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              +                E W     Y   DV +  ++   LE    ++ +L +  Q 
Sbjct: 177 WSTRPL-------------PEPW---LRYAALDVELLVDLRDALEKELDRQGKLEWALQE 220

Query: 192 I 192
            
Sbjct: 221 F 221


>gi|323152955|gb|EFZ39224.1| ribonuclease D [Escherichia coli EPECa14]
          Length = 371

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|269219399|ref|ZP_06163253.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211192|gb|EEZ77532.1| putative ribonuclease D [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 411

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 51/192 (26%), Gaps = 36/192 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            ID E          GI +Y+    V+      +     L D +        L E L   
Sbjct: 40  AIDTE-------RAMGI-RYSGRAYVV--QIRREGAGTFLIDPIGIEDRLGPLAELLATD 89

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-AL-KAVGEALKLSSQK 122
               + H +  +   L+    L         T V     G    +L   V E L     K
Sbjct: 90  --VWILHAADQDLPCLRE---LGFNPPEIFDTEVAGILLGFERISLQAEVAEVLGYGLAK 144

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                +   R    E                      Y   DV +  E+ +RL  +    
Sbjct: 145 EHSMADWSERPLAPE-------------------LRAYAALDVELLIELRERLTAMLRAA 185

Query: 183 QELWYLDQTIND 194
             L +L +   +
Sbjct: 186 GRLEWLHEECEE 197


>gi|221140978|ref|ZP_03565471.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|302751286|gb|ADL65463.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 897

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 85/280 (30%), Gaps = 33/280 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL---VLARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     + I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPN---------HREAWRLFGEY 160
           +                K +I  F K E       +             +   + +  +Y
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQY 202

Query: 161 CKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALAHTLNQIVDVERTK 217
               +  + E F           ++     +    +     VD        Q + +  T 
Sbjct: 203 DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVDQLGLTYRPQQLYLAETI 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKLTPQA 273
           LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K  P  
Sbjct: 263 LDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAM 322

Query: 274 IQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            +  N ++     +S    ++  L+  +  D      +  
Sbjct: 323 NEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNI 362


>gi|82543793|ref|YP_407740.1| ribonuclease D [Shigella boydii Sb227]
 gi|81245204|gb|ABB65912.1| RNase D [Shigella boydii Sb227]
          Length = 375

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +L+   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILSAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1]
 gi|71901532|ref|ZP_00683617.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23]
 gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1]
 gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Xylella fastidiosa Ann-1]
 gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23]
 gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 239

 Score = 44.7 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 33/149 (22%)

Query: 2   ATLFIDFETRSP-----IDLTKCGICKYAEDVCVIL----------FAFGFDDHPV---- 42
             + +D ET          + + G  +   D  +             +F      V    
Sbjct: 6   RQIVLDTETTGLEWSKGNRIVEIGAVELL-DRRLSGDKFHRYLKPDVSFESGAQEVTGLT 64

Query: 43  --ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLDIPIHRW 93
              L D     ++       +      ++ HN+ F+   L          +         
Sbjct: 65  MEFLADKPEFSMIADKFLAYIN--GAELIIHNAAFDLGFLDYELSRLGSQYGKITDRASV 122

Query: 94  ICTLVLA--RSNGLPSALKAVGEALKLSS 120
           + TLV+A  R  G  ++L A+ + L + +
Sbjct: 123 LDTLVMARERYPGQRNSLDALCKRLGVDN 151


>gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 1461

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 56  VLKEALE---NTDVTIVA--HNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN---G 104
            LKEAL+   N     +A  HN+ F+   LK       ++ P    I TL+++R      
Sbjct: 492 ELKEALQKIYNDLNGKIALAHNARFDFNFLKEKFRQAKIEFPNVTVIDTLIVSRIVFPQN 551

Query: 105 LPSALKAVGEALKLSSQ 121
               L+ V   + +   
Sbjct: 552 KKHKLEDVATRVGVEYD 568


>gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
 gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
          Length = 1461

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 56  VLKEALE---NTDVTIVA--HNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN---G 104
            LKEAL+   N     +A  HN+ F+   LK       ++ P    I TL+++R      
Sbjct: 492 ELKEALQKIYNDLNGKIALAHNARFDFNFLKEKFRQAKIEFPNVTVIDTLIVSRIVFPQN 551

Query: 105 LPSALKAVGEALKLSSQ 121
               L+ V   + +   
Sbjct: 552 KKHKLEDVATRVGVEYD 568


>gi|262212311|gb|ACY35772.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRRLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|166240304|ref|XP_001733024.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4]
 gi|165988531|gb|EDR41046.1| DNA polymerase III, epsilon subunit [Dictyostelium discoideum AX4]
          Length = 483

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 34/154 (22%)

Query: 2   ATLFIDFET---RSPIDLTKCGICKYAEDVCV-ILFAFGFDDHPVELWDCVHD------- 50
             +  D ET    S   + + G  +  +     ++F   +     ++             
Sbjct: 300 RVICFDLETSGVTSSDTIIEIGAVELIDGCRTGVIFQ-SYAQPKAQIHPVSEQIHQLTSL 358

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRW-ICTL- 97
                    ++     + + N+   +VAHN  F++ +L      +N+   I     CT+ 
Sbjct: 359 QLMSAPPIEIILASFMDWVGNS--PLVAHNLAFDKRILIQELIRYNIPFNIDHICFCTMK 416

Query: 98  ----VLARSNGLPSALKAVGEALKLSSQKMEEGK 127
               +    NGL  +L ++ + LK++   + +  
Sbjct: 417 YFKKI---YNGLNYSLDSISQKLKINKLLLRKTH 447


>gi|159046099|ref|YP_001534893.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
 gi|157913859|gb|ABV95292.1| DNA polymerase III subunit epsilon [Dinoroseobacter shibae DFL 12]
          Length = 485

 Score = 44.7 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 26/142 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-----HPVELWDCV----HD-- 50
             +  D ET   +      +C+ A    V       +      +P           H   
Sbjct: 290 KYVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGIT 349

Query: 51  PVMPQVLKEAL---------ENTDVTIVAHNSYFERTVL-KACFNLDIPI-HRWICTLVL 99
             M     + L          +  V  +AHN+ F+     +    +     H  + T++L
Sbjct: 350 DAMVADAPDFLTAGRAFHGFADGAVL-IAHNAPFDMAFFYRKQAEIGARFDHPVLDTVLL 408

Query: 100 ARSNG---LPSALKAVGEALKL 118
           +          +L A+ E L +
Sbjct: 409 SAVIYGQTEQHSLDALAERLNV 430


>gi|307824649|ref|ZP_07654873.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
           SV96]
 gi|307734303|gb|EFO05156.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
           SV96]
          Length = 241

 Score = 44.7 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 42/154 (27%), Gaps = 43/154 (27%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYAEDVCVILFAFGFDDHPVE 43
             + +D ET                       LT      Y     +       DD  +E
Sbjct: 9   RLVVLDTETTGLNPQEGHRIIEIGCVELVNRRLTGKRFHTYINPERI------IDDGAIE 62

Query: 44  LWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFNLDI 88
           +    +           + +     +++ ++  V HN+ F+          L +      
Sbjct: 63  VHGITNQFLEDKPCFADVVKDFIAFIQDAEL--VIHNAPFDVGFINYEFSRLNSQTGTVT 120

Query: 89  PIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
              +   TL  AR        +L A+ +   + +
Sbjct: 121 DYSKVFDTLTYARKKHPGQRNSLDALCKRYGIDN 154


>gi|293390398|ref|ZP_06634732.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950932|gb|EFE01051.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 253

 Score = 44.7 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 58/225 (25%), Gaps = 37/225 (16%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V +    +  +   ++   + PV P  +K  
Sbjct: 9   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPDAIKVH 68

Query: 59  ----EALENT-----------DVTI----VAHNSYFERTVLKACF---NLDIPIHRW--- 93
               E L +            +       + HN+ F+   +   F   NL I  +     
Sbjct: 69  GITDEMLADKPDFSQAANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICLV 128

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKP 148
             TL +AR         L A+   L + + K      L+                     
Sbjct: 129 TDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTGGQTSLFD 188

Query: 149 NH-REAWRLFGEYCKGDVTV---TREIFKRLEPLSSKEQELWYLD 189
               E  +  GE       V      +    E       E   L 
Sbjct: 189 ESEPEIIQHAGEQQVQSAVVFSHNLRLLTPTEEELQAHLEYLKLI 233


>gi|219681615|ref|YP_002468001.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682172|ref|YP_002468556.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471303|ref|ZP_05635302.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621905|gb|ACL30061.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624458|gb|ACL30613.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311087677|gb|ADP67756.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 44.7 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 30/149 (20%)

Query: 2   ATLFIDFET-----RSPIDLTKCGICKYAEDVCVILF-----------AFGFDDHPVELW 45
            T+ +D ET      S   +    I   A ++    F               +   +++ 
Sbjct: 5   RTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQPGRSIESGALKVH 64

Query: 46  DCVHDPVMPQVLKEALEN------TDVTIVAHNSYFERTVLKACFNL---DIPIH---RW 93
              +  ++ + + + + +       +  +V HN+ F+   +     +    I I+     
Sbjct: 65  GITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFCSI 124

Query: 94  ICTLVLARSNGLPSA--LKAVGEALKLSS 120
           I TL +AR         L A+    K++ 
Sbjct: 125 IDTLKMARKLFPGKKNTLDALCTRYKINK 153


>gi|220903363|ref|YP_002478675.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
            desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219867662|gb|ACL47997.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
            subsp. desulfuricans str. ATCC 27774]
          Length = 1086

 Score = 44.7 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 52/184 (28%), Gaps = 39/184 (21%)

Query: 4    LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP---QVLKEA 60
            L  D ETR      + G    A D   +  +          +D   D         L   
Sbjct: 911  LVFDVETRRAA--AEVGGWHKAGD---MGVSVAVA------YDSRADDFFSYSQDELPAL 959

Query: 61   LEN--TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGE 114
             E       +V  N   F+  VL      D+     +   +L R         +L  +G+
Sbjct: 960  FERMRAAGLVVGFNSLRFDYAVLTPFAPFDLRGLPSLD--LLQRVKERLSYRISLDNLGQ 1017

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            A  L+  K  +G + +                             YC+ DV +TR ++  
Sbjct: 1018 A-TLNEPKSADGLQALRW----------------WKEGKVEETTAYCRKDVDLTRRLYLY 1060

Query: 175  LEPL 178
                
Sbjct: 1061 GLEH 1064


>gi|120435022|ref|YP_860708.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117577172|emb|CAL65641.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 457

 Score = 44.7 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 47/148 (31%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV--ELWDCVHDPV---------- 52
           +D ET            KY E+  +   A + FD   V  +    V+             
Sbjct: 5   LDIETTG---------GKYNEEG-ITEIAIYKFDGQKVVDQFISLVNPEQPIQPFVVNLT 54

Query: 53  ---------------MPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
                          + + + E  E+    +VAHN+ F+  +L+        +       
Sbjct: 55  GINNDMLKNAPKFYEVAKRIVEITED--CILVAHNAKFDYRILRTEFRRLGFEYERKSL- 111

Query: 95  CTLVLARSNG---LPSALKAVGEALKLS 119
           CT+ L++         +L  +  +L + 
Sbjct: 112 CTVELSKKLIPGLPSYSLGKLVRSLGIP 139


>gi|332359593|gb|EGJ37411.1| DNA polymerase III [Streptococcus sanguinis SK49]
          Length = 814

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 72/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L + 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLNDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCHGIFLRRSQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER++  +    +   L        + +T L    G  L 
Sbjct: 242 GLEERSEQLKFARFMEEALDQQEPSFLEAQTGLGKTFGYLLP 283


>gi|325205739|gb|ADZ01192.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M04-240196]
          Length = 244

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 64  EVLEGK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 P 148
            
Sbjct: 178 D 178


>gi|311086562|gb|ADP66643.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 30/149 (20%)

Query: 2   ATLFIDFET-----RSPIDLTKCGICKYAEDVCVILF-----------AFGFDDHPVELW 45
            T+ +D ET      S   +    I   A ++    F               +   +++ 
Sbjct: 5   RTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQPGRSIESGALKVH 64

Query: 46  DCVHDPVMPQVLKEALEN------TDVTIVAHNSYFERTVLKACFNL---DIPIH---RW 93
              +  ++ + + + + +       +  +V HN+ F+   +     +    I I+     
Sbjct: 65  GITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFCSI 124

Query: 94  ICTLVLARSNGLPSA--LKAVGEALKLSS 120
           I TL +AR         L A+    K++ 
Sbjct: 125 IDTLKMARKLFPGKKNTLDALCTRYKINK 153


>gi|262212065|gb|ACY35649.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212229|gb|ACY35731.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTLGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKPLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAVKKASERGFIKALDGRKII 145


>gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 40/145 (27%), Gaps = 41/145 (28%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHDPVMPQVL------ 57
           ID ET       K G     E        + FD   V       ++              
Sbjct: 5   IDIETTGG----KMGEEAITEIAI-----YRFDGQKVTDRFISLINPEKKIDDFVVRLTG 55

Query: 58  ----------------KEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
                           K  +E   D  +VAHN+ F+  VL         D       CT+
Sbjct: 56  ISNKTVRQAPKFYEVAKRIVEITEDCILVAHNASFDYRVLSLEFRRLGFDYQRSTL-CTV 114

Query: 98  VLARSN---GLPSALKAVGEALKLS 119
            +++         +L  +  +L + 
Sbjct: 115 EMSQRLLPDEPSYSLGKLTRSLGIP 139


>gi|162148736|ref|YP_001603197.1| DNA polymerase III epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545498|ref|YP_002277727.1| DNA polymerase III subunit epsilon [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787313|emb|CAP56907.1| putative DNA polymerase III epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533175|gb|ACI53112.1| DNA polymerase III, epsilon subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 226

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 43/152 (28%), Gaps = 41/152 (26%)

Query: 1   MAT-LFIDFETRSPID-----------LTKCGICKYAEDVCVI---------------LF 33
           M   +  D ET                L   G         V+                F
Sbjct: 1   MKRAILFDTETTGLDPARGDRVIEIAALELVGDLPTGRHFHVLIHPDRDIPEEASRVHGF 60

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIP 89
                +         H   +       +   D+  +AHN+ F+       LK      + 
Sbjct: 61  TLADLEGK----PRFH--EIADDFLAFIGQDDL--IAHNARFDFGFLNAELKRAERPALS 112

Query: 90  IHRWICTLVLA--RSNGLPSALKAVGEALKLS 119
           + R + TL +A  R  GLP++L A+     + 
Sbjct: 113 LDRMVDTLDIARDRYPGLPNSLDALCRRFSID 144


>gi|67459827|ref|YP_247450.1| DNA polymerase III subunit epsilon [Rickettsia felis URRWXCal2]
 gi|67005360|gb|AAY62285.1| DNA polymerase III, epsilon subunit-like protein [Rickettsia felis
           URRWXCal2]
          Length = 377

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 40/146 (27%)

Query: 4   LFIDFETRSP----IDLTKCGI--CKYAEDVCVILFAFGFDD-----HPVELWDCV---- 48
           +F+D ET         + + G+   +Y ED  +       D+      P +         
Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQI---VDELNQYQDPQQPIPLRITEL 182

Query: 49  --------HDPVMPQV-LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
                       + Q  + + LEN D+  +AHN+ F+R      F L +P   W C    
Sbjct: 183 TGITDEMVQGKAIDQEAVTQFLENVDII-IAHNASFDRPFFDKMF-LHLPPKAWGC---- 236

Query: 100 ARS-NG------LPSALKAVGEALKL 118
           +R+             L+ +      
Sbjct: 237 SRADIDWKAEKIESHKLEYLAYKYNF 262


>gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
 gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
          Length = 695

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 45/150 (30%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDH---PVELWD--------CVHD 50
            +  D ET   +               ++  A     +      E+ D            
Sbjct: 496 YVVFDTETTGLMP----------SQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPS 545

Query: 51  PVMPQVLKEAL--ENTDVT--------------IVAHNSYFERTVLKACF---NLDIPIH 91
                 + +A+  E  D+               +VAHN+ F+   L+            +
Sbjct: 546 STEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEPLIGRRFD-N 604

Query: 92  RWICTLVLARSN---GLPSALKAVGEALKL 118
             + T++L+          +L A+   L +
Sbjct: 605 PILDTVLLSAVLFGQSDVHSLDALTHRLGI 634


>gi|316968157|gb|EFV52483.1| exosome component 10 [Trichinella spiralis]
          Length = 827

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 57/521 (10%), Positives = 137/521 (26%), Gaps = 65/521 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       Y    C++  +    D+ V+ +   H+  +   L E   + ++  V H S
Sbjct: 277 VDLEHNSYRSYYGLTCLLQISTRDTDYIVDPFPIWHEMYI---LNEPFVDPNIVKVMHGS 333

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL-KLSSQKMEEGKEL-I 130
             +   L+  F + +       T        +P  +LK + + L  ++  K  +  +  I
Sbjct: 334 SQDIQWLQRDFGIYV--VNLFDTYHAMEVLEMPQRSLKFLVKELVGVNLDKSYQTADWRI 391

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
                                        Y + D       +  L          +    
Sbjct: 392 RPLG--------------------SKMLAYARSDSHYLLYCWDVLRNQLLNRGNEYNDLM 431

Query: 191 TINDRGYCVDVALAHTLNQ---IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
            I          +    +     V  ++   + EL  L      +    +K    +    
Sbjct: 432 MI----------VLKRSSDTCLQVYKKKFPNEFELRKLESKFPFNLDNRQKYALRMLYYW 481

Query: 248 GLHLEDLTETTC-----QRVLSSNKKLTPQAIQVFNNRMR-ASRSAVLKLNTLVEAMNSD 301
              +  +T+ +         L +     P+ +Q+  N  +  + + +  L  + + +   
Sbjct: 482 RDGVARITDESVYYIMRNETLRNLAAKLPRDMQLLENACKPITGALMPHLQEIQKIIC-- 539

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIIS 361
                 L  +   +    +          RP   + + ++    L        D     S
Sbjct: 540 DAWCLDLFTMKPPKAETVAVERSSVAR-RRPHDIYIDENKKELPLSQIFDKPVDETVKQS 598

Query: 362 DCVRSCVIASEG----KKLVVADLAGIEARVLAWM---------AGEQWKLKAFETGEDL 408
             +     AS G      L+ +    I++                 +    + +   +++
Sbjct: 599 MPISESFKASSGETFHHVLLTSQWYAIDSAKSGTEKDERAELLLLDDFAIFEKYCLTKEI 658

Query: 409 YVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKT 468
                     +       D++           Y GG        + T  N ++ +   K 
Sbjct: 659 RDVNKPEPARIVWDVGYNDEQRKAAEESAGPAYSGGKAQEPNKMTDTQHNSSSLS-TEKP 717

Query: 469 NSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKA 509
           N   + +    ++   +               T       A
Sbjct: 718 NETLKAFYKPYDYSNSVMRCFRG-GSSTGGDSTEARGTVSA 757


>gi|254492081|ref|ZP_05105256.1| ribonuclease D [Methylophaga thiooxidans DMS010]
 gi|224462633|gb|EEF78907.1| ribonuclease D [Methylophaga thiooxydans DMS010]
          Length = 379

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 50/184 (27%), Gaps = 46/184 (25%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           L ID E     T                   + L     DD    +     D      L 
Sbjct: 25  LAIDTEFHREKTYY---------------PQLCLIQVANDDVIACVDPLKIDD--LSPLM 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVGEA- 115
           +    TD+T+V H +  +  +L      D    +   T + A   G         + +  
Sbjct: 68  DVFYRTDMTLVFHAARQDLELL--FLLRDALPQQVFDTQLAATVLGYGDQIGYGNLVKQC 125

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +   K     +                R +P   E       Y   DV   RE++ +L
Sbjct: 126 LNVDLDKAHARTDW---------------RQRPLSPEQID----YAADDVRYLRELYHQL 166

Query: 176 EPLS 179
           E   
Sbjct: 167 EAKL 170


>gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
 gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter
           sphaeroides KD131]
          Length = 695

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 45/150 (30%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDH---PVELWD--------CVHD 50
            +  D ET   +               ++  A     +      E+ D            
Sbjct: 496 YVVFDTETTGLMP----------SQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRSIPPS 545

Query: 51  PVMPQVLKEAL--ENTDVT--------------IVAHNSYFERTVLKACF---NLDIPIH 91
                 + +A+  E  D+               +VAHN+ F+   L+            +
Sbjct: 546 STEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEPLIGRRFD-N 604

Query: 92  RWICTLVLARSN---GLPSALKAVGEALKL 118
             + T++L+          +L A+   L +
Sbjct: 605 PILDTVLLSAVLFGQSDVHSLDALTHRLGI 634


>gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
          Length = 695

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 45/150 (30%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDH---PVELWD--------CVHD 50
            +  D ET   +               ++  A     +      E+ D            
Sbjct: 496 YVVFDTETTGLMP----------SQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPS 545

Query: 51  PVMPQVLKEAL--ENTDVT--------------IVAHNSYFERTVLKACF---NLDIPIH 91
                 + +A+  E  D+               +VAHN+ F+   L+            +
Sbjct: 546 STEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEPLIGRRFD-N 604

Query: 92  RWICTLVLARSN---GLPSALKAVGEALKL 118
             + T++L+          +L A+   L +
Sbjct: 605 PILDTVLLSAVLFGQSDVHSLDALTHRLGI 634


>gi|303253729|ref|ZP_07339866.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247590|ref|ZP_07529633.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302647454|gb|EFL77673.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855860|gb|EFM88020.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 87/310 (28%), Gaps = 50/310 (16%)

Query: 4   LFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           + +D E   TRS     K G+ +             FD   V L D  +           
Sbjct: 29  VALDTEFIRTRSYYP--KLGLIQL------------FDGDTVSLID-PNPISDFSPFIGL 73

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEALK 117
           L   +V  V H    +  V +  F           T ++A   G+  +L   K V   L 
Sbjct: 74  LTCQNVVKVLHACSEDLEVFQHLF--KQLPTPLADTQIMAGFAGVGISLGFAKLVAHYLN 131

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K     + +AR                          +Y   DV     +++RL  
Sbjct: 132 VELDKGASRTDWLARPLT-------------------EEQLQYAAADVWYLLPVYQRLVS 172

Query: 178 LSSKEQELWYLDQTI----NDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                +    ++Q      N R   V++A A+           +    L+ L    +  +
Sbjct: 173 DLDATRWQNAVEQECQYLLNKRESVVNIAQAYKDISNAWRLEPQQLAILKVLAKWRIEEA 232

Query: 234 RCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQA---IQVFNNRMRASRSAVL 289
              +    ++  E  L  +  L      ++L        +      +       +     
Sbjct: 233 EKRDLALNFVVKENCLFEIAKLQPKHTSQLLEFMHPNEVRIHGKKLLMLVEQGLAVLPEN 292

Query: 290 KLNTLVEAMN 299
               ++  ++
Sbjct: 293 YPEKIIRLVD 302


>gi|238917782|ref|YP_002931299.1| DNA polymerase [Eubacterium eligens ATCC 27750]
 gi|238873142|gb|ACR72852.1| DNA polymerase [Eubacterium eligens ATCC 27750]
          Length = 233

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 35/147 (23%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVI---------LFAFGFDDHPVELWDCV 48
             + +D ET         + + G+ +  ED  +            +       +     +
Sbjct: 4   RYVALDIETTGLNPAVDRIIEVGMAR-VEDGQITQKYSTLVYPGISVS---ERITELTGI 59

Query: 49  HDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICT 96
           H+  +    K  +E+          D  ++ HN  F+ + LK       L I       T
Sbjct: 60  HNEELTG--KPRIEDIIGEITEFIGDWPVLGHNVIFDFSFLKKAAVNNGLTINDDGI-DT 116

Query: 97  LVLARSNGL---PSALKAVGEALKLSS 120
           L LAR         +L  + +   +  
Sbjct: 117 LKLARRILPEVEHKSLSFLCQYFNIDP 143


>gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1467

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 56  VLKEALE---NTDVTIVA--HNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN---G 104
            LKEAL+   N     +A  HN+ F+   LK       ++ P    I TL+++R      
Sbjct: 498 ELKEALQKIYNDLNGKIALAHNARFDFNFLKEKFRQAKIEFPNVTVIDTLIVSRIVFPQN 557

Query: 105 LPSALKAVGEALKLSSQ 121
               L+ V   + +   
Sbjct: 558 KKHKLEDVATRVGVEYD 574


>gi|85375423|ref|YP_459485.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
 gi|84788506|gb|ABC64688.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 42/151 (27%), Gaps = 40/151 (26%)

Query: 1   MATLFIDFETRSPID-----LTKCG----------------ICKYAED-----VCVILFA 34
           M  +  D ET          + + G                      D       V   +
Sbjct: 1   MREIVFDTETTGLDPKTGDRMVEIGCVELMNRVPTGETFHAYYNPERDMPPAAEEVHGLS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPI 90
             F            D      L E L +    +VAHN+ F+   L     L     I +
Sbjct: 61  AAFLSDK----PLFRD--TADALLEFLGDA--PLVAHNAGFDFGFLNTELELIEREAISL 112

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLS 119
            R + T+ +AR     +  +L A+     + 
Sbjct: 113 DRMVDTVQIARKKHPGAKVSLDALCSRYGVD 143


>gi|300904667|ref|ZP_07122502.1| ribonuclease D [Escherichia coli MS 84-1]
 gi|301305900|ref|ZP_07211983.1| ribonuclease D [Escherichia coli MS 124-1]
 gi|300403417|gb|EFJ86955.1| ribonuclease D [Escherichia coli MS 84-1]
 gi|300838826|gb|EFK66586.1| ribonuclease D [Escherichia coli MS 124-1]
 gi|315257385|gb|EFU37353.1| ribonuclease D [Escherichia coli MS 85-1]
 gi|323180583|gb|EFZ66128.1| ribonuclease D [Escherichia coli 1180]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|282916722|ref|ZP_06324480.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus D139]
 gi|282319209|gb|EFB49561.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus D139]
 gi|298694746|gb|ADI97968.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323439542|gb|EGA97263.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
          Length = 897

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 85/280 (30%), Gaps = 33/280 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL---VLARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     + I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPN---------HREAWRLFGEY 160
           +                K +I  F K E       +             +   + +  +Y
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQY 202

Query: 161 CKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALAHTLNQIVDVERTK 217
               +  + E F           ++     +    +     VD        Q + +  T 
Sbjct: 203 DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVDQLGLTYRPQQLYLAETI 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKLTPQA 273
           LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K  P  
Sbjct: 263 LDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAM 322

Query: 274 IQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            +  N ++     +S    ++  L+  +  D      +  
Sbjct: 323 NEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNI 362


>gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
 gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
          Length = 821

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 25/140 (17%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVI---------LFAFGFDDHPVELWD--C 47
           T+  D ET         + + G  K  E+  +I              F    +   D   
Sbjct: 518 TVVFDLETTGFDPRVNHIIEIGAVK-IENGKIIDRMDVFVNPGVPIPFRITQLTSIDDSM 576

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARS 102
           V D    + +     +   D  +VAHN+ F+   +       N+       I T+ L+R 
Sbjct: 577 VMDAKGIEEVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIPFS-APVIDTVALSRL 635

Query: 103 NGLPSA---LKAVGEALKLS 119
                    L  V + LK+ 
Sbjct: 636 LLPRLNRFKLDTVAKELKIE 655


>gi|77164160|ref|YP_342685.1| exonuclease [Nitrosococcus oceani ATCC 19707]
 gi|254435603|ref|ZP_05049110.1| exonuclease superfamily [Nitrosococcus oceani AFC27]
 gi|76882474|gb|ABA57155.1| Exonuclease [Nitrosococcus oceani ATCC 19707]
 gi|207088714|gb|EDZ65986.1| exonuclease superfamily [Nitrosococcus oceani AFC27]
          Length = 205

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 55/167 (32%)

Query: 2   ATLFIDFETRSPID------LTKCGI-------------------CKYAEDVC-VILF-- 33
             + +D ET    D      +   GI                    + +E+   +     
Sbjct: 15  DYIVLDTETTGLPDENGLPDIVTLGITVVSNREIAESVEFKTRPQKRISEEAQSIHGITN 74

Query: 34  --AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLD 87
             A  FD    +         + + LK  L      IV HN+ F+  +L           
Sbjct: 75  KQAAAFDSFDSQW------QQISEYLKHQL------IVIHNASFDWPILLDHVLRHGLAM 122

Query: 88  IPIHRWICTLVL----ARSNGLP-----SALKAVGEALKLSSQKMEE 125
             I    C+       A++  LP      +L  + +AL +   +++E
Sbjct: 123 PEIQGVFCSQKAAIPWAQAMDLPCSHRGPSLDTLTKALGVEDLRVKE 169


>gi|30062942|ref|NP_837113.1| ribonuclease D [Shigella flexneri 2a str. 2457T]
 gi|56479892|ref|NP_707318.2| ribonuclease D [Shigella flexneri 2a str. 301]
 gi|30041191|gb|AAP16920.1| RNase D [Shigella flexneri 2a str. 2457T]
 gi|56383443|gb|AAN43025.2| RNase D [Shigella flexneri 2a str. 301]
 gi|313649164|gb|EFS13598.1| ribonuclease D [Shigella flexneri 2a str. 2457T]
 gi|332758877|gb|EGJ89192.1| ribonuclease D [Shigella flexneri 2747-71]
 gi|332762455|gb|EGJ92720.1| ribonuclease D [Shigella flexneri 4343-70]
 gi|332767130|gb|EGJ97325.1| ribonuclease D [Shigella flexneri 2930-71]
 gi|333004261|gb|EGK23792.1| ribonuclease D [Shigella flexneri K-218]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|15924445|ref|NP_371979.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927036|ref|NP_374569.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus N315]
 gi|57650410|ref|YP_186339.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus COL]
 gi|87161026|ref|YP_494043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195189|ref|YP_499990.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148267941|ref|YP_001246884.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394004|ref|YP_001316679.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221578|ref|YP_001332400.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509623|ref|YP_001575282.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253315964|ref|ZP_04839177.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255006242|ref|ZP_05144843.2| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795489|ref|ZP_05644468.1| DnaQ family protein [Staphylococcus aureus A9781]
 gi|258413298|ref|ZP_05681574.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9763]
 gi|258420595|ref|ZP_05683537.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9719]
 gi|258426791|ref|ZP_05688011.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9299]
 gi|258444789|ref|ZP_05693118.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8115]
 gi|258447377|ref|ZP_05695521.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6300]
 gi|258449738|ref|ZP_05697839.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6224]
 gi|258451113|ref|ZP_05699148.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5948]
 gi|258454593|ref|ZP_05702557.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5937]
 gi|269203080|ref|YP_003282349.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892951|ref|ZP_06301186.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8117]
 gi|282927982|ref|ZP_06335591.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A10102]
 gi|284024454|ref|ZP_06378852.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848419|ref|ZP_06789165.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9754]
 gi|295407205|ref|ZP_06817005.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8819]
 gi|296275347|ref|ZP_06857854.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297244629|ref|ZP_06928512.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8796]
 gi|304380963|ref|ZP_07363621.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|81832505|sp|Q7A5K4|DING_STAAN RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81855933|sp|Q99U34|DING_STAAM RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81859586|sp|Q5HFW8|DING_STAAC RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|122539544|sp|Q2FYH5|DING_STAA8 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|123485907|sp|Q2FGY5|DING_STAA3 RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|13701253|dbj|BAB42548.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus
           subsp. aureus N315]
 gi|14247226|dbj|BAB57617.1| probable ATP-dependent DNA helicase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|57284596|gb|AAW36690.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127000|gb|ABD21514.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202747|gb|ABD30557.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741010|gb|ABQ49308.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946456|gb|ABR52392.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150374378|dbj|BAF67638.1| DnaQ family exonuclease [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368432|gb|ABX29403.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257789461|gb|EEV27801.1| DnaQ family protein [Staphylococcus aureus A9781]
 gi|257839862|gb|EEV64330.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9763]
 gi|257843543|gb|EEV67950.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9719]
 gi|257849952|gb|EEV73910.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9299]
 gi|257850282|gb|EEV74235.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8115]
 gi|257853568|gb|EEV76527.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6300]
 gi|257856986|gb|EEV79886.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A6224]
 gi|257861168|gb|EEV83981.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5948]
 gi|257862976|gb|EEV85740.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A5937]
 gi|262075370|gb|ACY11343.1| DNA polymerase III, epsilon subunit [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940948|emb|CBI49332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282590279|gb|EFB95359.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A10102]
 gi|282764948|gb|EFC05073.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8117]
 gi|285817135|gb|ADC37622.1| DinG family ATP-dependent helicase YoaA [Staphylococcus aureus
           04-02981]
 gi|294824445|gb|EFG40868.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9754]
 gi|294967918|gb|EFG43947.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8819]
 gi|297178659|gb|EFH37905.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A8796]
 gi|304340488|gb|EFM06424.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315129170|gb|EFT85165.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|315197799|gb|EFU28133.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320140373|gb|EFW32229.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142700|gb|EFW34503.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314132|gb|AEB88545.1| Probable ATP-dependent helicase dinG -like protein [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329723190|gb|EGG59721.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727432|gb|EGG63888.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 897

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 85/280 (30%), Gaps = 33/280 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL---VLARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     + I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPN---------HREAWRLFGEY 160
           +                K +I  F K E       +             +   + +  +Y
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQY 202

Query: 161 CKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALAHTLNQIVDVERTK 217
               +  + E F           ++     +    +     VD        Q + +  T 
Sbjct: 203 DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVDQLGLTYRPQQLYLAETI 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKLTPQA 273
           LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K  P  
Sbjct: 263 LDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAM 322

Query: 274 IQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            +  N ++     +S    ++  L+  +  D      +  
Sbjct: 323 NEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNI 362


>gi|325134669|gb|EGC57309.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399]
          Length = 244

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 64  EVLEGK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 P 148
            
Sbjct: 178 D 178


>gi|315658260|ref|ZP_07911132.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           lugdunensis M23590]
 gi|315496589|gb|EFU84912.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           lugdunensis M23590]
          Length = 893

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 52/174 (29%), Gaps = 30/174 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV- 56
           +D ET       D        +  D  ++       +  VE+   +      +  M +  
Sbjct: 9   VDLETTGNQLDYDEIIQIGITFVRDQKIVGTYHSMINTDVEIPPFIQALTSIEEDMLKQA 68

Query: 57  --LKEALEN-----TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL---ARSN 103
               E  E+      D   VAHN  F+ T +K  F   ++     + I T+ L   A   
Sbjct: 69  PYFHEVAEDVYKQLKDSVFVAHNVSFDLTFIKKAFKRNHIHFQPKKVIDTVELFKIAFPT 128

Query: 104 GLPSALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLYDRNKPN 149
                L  + EA  +                K +I  F K ET      +    
Sbjct: 129 DKSYQLSELAEAHHIPLDNAHRADEDATTTAKLMIKAFQKFETLPLDTLKQLYY 182


>gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 1444

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 70/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   +    +VAHN+ F+   +   +    +    +  + TL L
Sbjct: 486 MVKGSDPIDVVLKRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 543

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     +   H   
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHDSL 603

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 604 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 663

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 664 LI-IGTACSQGELFEAMMQKGMQAAEKVADFYDFIEIQPKPVYAPLIER 711


>gi|237731840|ref|ZP_04562321.1| ribonuclease D [Citrobacter sp. 30_2]
 gi|226907379|gb|EEH93297.1| ribonuclease D [Citrobacter sp. 30_2]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 50/178 (28%), Gaps = 40/178 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          L+
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGKHVALID-PQGITDWSPLR 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  DILRDTAITKFLHAGSEDLEVFLNAFG-ELP-QPLIDTQILAAFCGRPMSWGFAAMVEEF 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +   +++ +       +  T                    EY   DV     I  +L 
Sbjct: 122 TGVALDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITTKLM 163


>gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185]
 gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195]
 gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
 gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185]
 gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195]
 gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
 gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678]
          Length = 242

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 47/164 (28%), Gaps = 51/164 (31%)

Query: 1   MATLF-------IDFETRSPIDLTKCGICKYAEDVCVILFAF------------------ 35
           M  +        +D ET     + +     Y     +I                      
Sbjct: 1   MNIISNASRQVILDTETTG---MNQGSGAIYLGH-RIIEIGCVEVVNRRLTGRYYHQYIN 56

Query: 36  ---GFDDHPVELWDCVHDP--------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
                D   + +     +          + Q     ++  ++  VAHN+ F+ + +   F
Sbjct: 57  PGQAIDPEAIAVHGITDERVSKEPRFHQVAQDFINFIDGAEI--VAHNANFDVSFMDHEF 114

Query: 85  NL-------DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLS 119
           +L          I + + TLV+A+         L A+ +   + 
Sbjct: 115 SLLQPRGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVD 158


>gi|21283074|ref|NP_646162.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486295|ref|YP_043516.1| hypothetical protein SAS1398 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253732097|ref|ZP_04866262.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733298|ref|ZP_04867463.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|297207885|ref|ZP_06924318.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911970|ref|ZP_07129413.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|81827855|sp|Q6G9A7|DING_STAAS RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|81847815|sp|Q8NWP2|DING_STAAW RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|21204514|dbj|BAB95210.1| probable ATP-dependent DNA helicase dinG [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244738|emb|CAG43174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253724144|gb|EES92873.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728838|gb|EES97567.1| ATP-dependent DNA helicase dinG [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|296887459|gb|EFH26359.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300886216|gb|EFK81418.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 897

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 85/280 (30%), Gaps = 33/280 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL---VLARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     + I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPN---------HREAWRLFGEY 160
           +                K +I  F K E       +             +   + +  +Y
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQY 202

Query: 161 CKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALAHTLNQIVDVERTK 217
               +  + E F           ++     +    +     VD        Q + +  T 
Sbjct: 203 DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVDQLGLTYRPQQLYLAETI 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKLTPQA 273
           LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K  P  
Sbjct: 263 LDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAM 322

Query: 274 IQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            +  N ++     +S    ++  L+  +  D      +  
Sbjct: 323 NEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNI 362


>gi|322514433|ref|ZP_08067476.1| ribonuclease D [Actinobacillus ureae ATCC 25976]
 gi|322119681|gb|EFX91739.1| ribonuclease D [Actinobacillus ureae ATCC 25976]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 74/277 (26%), Gaps = 27/277 (9%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   V L D            E L N  V  V H    +  V +  F         + T
Sbjct: 51  FDGEQVSLIDPTKIDDF-APFIELLANQQVVKVLHACGEDLEVFQHRF--KQLPTPLVDT 107

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G+  ++            ++++G        +  +                  
Sbjct: 108 QIMADFAGIGVSMGFAKLVAHYLQIELDKGASRTDWLARPLS----------------EE 151

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI----NDRGYCVDVALAHTLNQIVD 212
             +Y   DV     +++RL       +    +++        R    + + A+     V 
Sbjct: 152 QLQYAAADVWYLLPVYQRLVVDLDVTRWQNAVEEECQTLLEKRQNLPNSSKAYKDISNVW 211

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTP 271
              +     L+ L    +  +   +    ++     L  +  L      ++L        
Sbjct: 212 RLTSAQLAVLQVLAKWRMEEAEKRDLALNFVVKGQNLFEIAKLQPKHTSQLLEFMHPNEV 271

Query: 272 QA---IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
           +      +       + +      T+   ++  G   
Sbjct: 272 RIHGKKLLLLVEQGKAVTKEDYPPTISRLVDEPGYKH 308


>gi|306841731|ref|ZP_07474417.1| DNA polymerase III, epsilon chain [Brucella sp. BO2]
 gi|306288136|gb|EFM59523.1| DNA polymerase III, epsilon chain [Brucella sp. BO2]
          Length = 193

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRW 93
           FD+      D  H   +   +++     D  +VAHN+ F+   ++  F    +D+     
Sbjct: 44  FDNWMTRYQDLFH--ELAAPIRKWFSWAD-EVVAHNAQFDIHYIQREFRKAEVDMLDQPV 100

Query: 94  ICTLVLARSN--GLPSALKAVGEALKL 118
            CT+  AR    G P+ L      + L
Sbjct: 101 YCTMEGARRLWRGDPAKLDHCLAKIGL 127


>gi|326790794|ref|YP_004308615.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326541558|gb|ADZ83417.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 237

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 34/143 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICK---YAEDVCVILFAFGFDD--HPVELW----------- 45
             + +D ET     +    I     Y E+  V      F++   P ++            
Sbjct: 3   KYVVVDIETTGAHPVQSEIIEIGAVYIEEGQVKKI---FNELVRPTQIISDYIISITGIT 59

Query: 46  -----DCVHDPVMPQVLKEALENTDVTIVAHN-SYFERTVLK---ACFNLDIPIHRWICT 96
                D      +     +  E+  V ++ HN   F+  +LK                 T
Sbjct: 60  NEMVADAPPIEEVMPRFIDFCED--VPLIGHNIILFDYRMLKTKATALGFTFEKMGV-DT 116

Query: 97  LVLAR---SNGLPSALKAVGEAL 116
           LV++R   ++     L  + E  
Sbjct: 117 LVISRKMLAHLPSRKLGDLCEHY 139


>gi|291436577|ref|ZP_06575967.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
 gi|291339472|gb|EFE66428.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
          Length = 432

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 27/180 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D  +    +Y +   ++            +            L EAL  + V  V H +
Sbjct: 68  VDAERASGYRYGQRAYLVQLR-RQGAGTALIDPVACPD--LSALGEAL--SGVEWVLHAA 122

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIAR 132
             +   L+    + +   R   T +  R  G P   L A+ E   +    +E+G   +  
Sbjct: 123 TQDLPCLRE---IGMLPTRLFDTELAGRLAGFPRVGLGAMVE--NVLGYVLEKGHSAVDW 177

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
             +                E W     Y   DV +  ++   LE    ++ +L +  Q  
Sbjct: 178 STRPL-------------PEPW---LRYAALDVELLVDLRNALEKELDRQGKLEWARQEF 221


>gi|290476066|ref|YP_003468963.1| DNA polymerase III subunit epsilon [Xenorhabdus bovienii SS-2004]
 gi|289175396|emb|CBJ82199.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Xenorhabdus bovienii SS-2004]
          Length = 249

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 47/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPI---------DLTKCGICKYA---------------------EDVCVI 31
             + +D ET             ++ + G  +                       E   V 
Sbjct: 7   RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHLYIKPERLVDPEAFEVH 66

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI 88
             +         L D      +     E +      ++ HN+ F+   +       N DI
Sbjct: 67  GIS------DEFLQDKPTFADIADEFIEFIR--GAELIIHNATFDIGFMDYEFRKLNRDI 118

Query: 89  PIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P     CT    LVLAR         L A+ +  ++ + K      L+ 
Sbjct: 119 PPTADFCTITDSLVLARQLFPGKRNNLNALCDRYQIDNSKRTLHGALLD 167


>gi|262212243|gb|ACY35738.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEGVVNGDIHAALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|262212111|gb|ACY35672.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342243|gb|ACY54632.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTLGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKPLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAVKKASERGFIKALDGRKII 145


>gi|260855663|ref|YP_003229554.1| ribonuclease D [Escherichia coli O26:H11 str. 11368]
 gi|257754312|dbj|BAI25814.1| ribonuclease D [Escherichia coli O26:H11 str. 11368]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|239928248|ref|ZP_04685201.1| ribonuclease D [Streptomyces ghanaensis ATCC 14672]
          Length = 398

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 27/180 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D  +    +Y +   ++            +            L EAL  + V  V H +
Sbjct: 34  VDAERASGYRYGQRAYLVQLR-RQGAGTALIDPVACPD--LSALGEAL--SGVEWVLHAA 88

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIAR 132
             +   L+    + +   R   T +  R  G P   L A+ E   +    +E+G   +  
Sbjct: 89  TQDLPCLRE---IGMLPTRLFDTELAGRLAGFPRVGLGAMVE--NVLGYVLEKGHSAVDW 143

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
             +                E W     Y   DV +  ++   LE    ++ +L +  Q  
Sbjct: 144 STRPL-------------PEPW---LRYAALDVELLVDLRNALEKELDRQGKLEWARQEF 187


>gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61]
 gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1444

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 47/185 (25%), Gaps = 50/185 (27%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------------- 43
           ET    D+   G+     +  + L A    D  +                          
Sbjct: 427 ETYVVFDVETTGLSA-VYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELTGITD 485

Query: 44  --LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
             + D      +     +   +   T+VAHN+ F+   L    A        +  I TL 
Sbjct: 486 EMVKDAPKPDEVLARFVDWAGDA--TLVAHNASFDIGFLNAGLARMGRGKIANPVIDTLE 543

Query: 99  LARSNGL---PSALKAVGE--------ALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           LAR          L  + +          +        G  L+    + E       R  
Sbjct: 544 LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLLKEAEE------RGI 597

Query: 148 PNHRE 152
             H E
Sbjct: 598 LFHDE 602


>gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426]
 gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus
           kaustophilus HTA426]
          Length = 1444

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 47/185 (25%), Gaps = 50/185 (27%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------------- 43
           ET    D+   G+     +  + L A    D  +                          
Sbjct: 427 ETYVVFDVETTGLSA-VYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELTGITD 485

Query: 44  --LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
             + D      +     +   +   T+VAHN+ F+   L    A        +  I TL 
Sbjct: 486 EMVKDAPKPDEVLARFVDWAGDA--TLVAHNASFDIGFLNTGLARMGRGKIANPVIDTLE 543

Query: 99  LARSNGL---PSALKAVGE--------ALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           LAR          L  + +          +        G  L+    + E       R  
Sbjct: 544 LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLLKEAEE------RGI 597

Query: 148 PNHRE 152
             H E
Sbjct: 598 LFHDE 602


>gi|16759250|ref|NP_454867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16763647|ref|NP_459262.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142975|ref|NP_806317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56414616|ref|YP_151691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363544|ref|YP_002143181.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205351595|ref|YP_002225396.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855776|ref|YP_002242427.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|60392203|sp|P0A1G9|DPO3E_SALTY RecName: Full=DNA polymerase III subunit epsilon
 gi|60392204|sp|P0A1H0|DPO3E_SALTI RecName: Full=DNA polymerase III subunit epsilon
 gi|25299960|pir||AF0534 DNA polymerase III epsilon chain [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|1172157|gb|AAA86422.1| dnaQ [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|1794290|gb|AAC44792.1| DNA polymerase III epsilon chain [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16418764|gb|AAL19221.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16501541|emb|CAD08718.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138607|gb|AAO70177.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56128873|gb|AAV78379.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095021|emb|CAR60567.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205271376|emb|CAR36169.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206707579|emb|CAR31853.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245489|emb|CBG23279.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267991951|gb|ACY86836.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156885|emb|CBW16361.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|332987210|gb|AEF06193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 243

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 7   RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFNL---DI 88
                  + D  +    K    +             +V HN+ F+   +   F L   DI
Sbjct: 61  EAFGVHGIADEFLLD--KPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDI 118

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 119 PKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 167


>gi|323442219|gb|EGA99850.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
          Length = 897

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 85/280 (30%), Gaps = 33/280 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV---LARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     + I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPN---------HREAWRLFGEY 160
           +                K +I  F K E       +             +   + +  +Y
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQY 202

Query: 161 CKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALAHTLNQIVDVERTK 217
               +  + E F           ++     +    +     VD        Q + +  T 
Sbjct: 203 DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVDQLGLTYRPQQLYLAETI 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKLTPQA 273
           LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K  P  
Sbjct: 263 LDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAM 322

Query: 274 IQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            +  N ++     +S    ++  L+  +  D      +  
Sbjct: 323 NEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNI 362


>gi|312829847|emb|CBX34689.1| dnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           subsp. aureus ECT-R 2]
          Length = 897

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 85/280 (30%), Gaps = 33/280 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV---LARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     + I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPN---------HREAWRLFGEY 160
           +                K +I  F K E       +             +   + +  +Y
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQY 202

Query: 161 CKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALAHTLNQIVDVERTK 217
               +  + E F           ++     +    +     VD        Q + +  T 
Sbjct: 203 DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVDQLGLTYRPQQLYLAETI 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKLTPQA 273
           LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K  P  
Sbjct: 263 LDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAM 322

Query: 274 IQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            +  N ++     +S    ++  L+  +  D      +  
Sbjct: 323 NEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNI 362


>gi|282921701|ref|ZP_06329418.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9765]
 gi|282593963|gb|EFB98952.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9765]
          Length = 897

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 85/280 (30%), Gaps = 33/280 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV---LARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     + I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPN---------HREAWRLFGEY 160
           +                K +I  F K E       +             +   + +  +Y
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQY 202

Query: 161 CKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALAHTLNQIVDVERTK 217
               +  + E F           ++     +    +     VD        Q + +  T 
Sbjct: 203 DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVDQLGLTYRPQQLYLAETI 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKLTPQA 273
           LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K  P  
Sbjct: 263 LDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAM 322

Query: 274 IQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            +  N ++     +S    ++  L+  +  D      +  
Sbjct: 323 NEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNI 362


>gi|163941216|ref|YP_001646100.1| DNA polymerase III subunit epsilon [Bacillus weihenstephanensis
           KBAB4]
 gi|163863413|gb|ABY44472.1| DNA polymerase III, epsilon subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 66/245 (26%), Gaps = 27/245 (11%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AF-----GFDDHPVELWDCVH-- 49
             + IDFET         + +    KY     V  F ++        D    L    +  
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGITNYR 68

Query: 50  --DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-- 100
             D    + +            IVAHN+ F+   LK       L  P +  I T+ LA  
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTKVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFLAKK 128

Query: 101 RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
              +     L+ +   L +         + I      +    + +  K        +  E
Sbjct: 129 YMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAVEEEGKRKA--NKEVLDE 186

Query: 160 YCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
               +      +  + +           YLD         + V         +  +    
Sbjct: 187 TAVFEAVKEMLVRNKRDIEWIRCMNVGSYLDIKAFYPIIRLKVKGRKKYV--LTEKMEDD 244

Query: 219 DQELE 223
            +E+ 
Sbjct: 245 VREIC 249


>gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 1438

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 28/142 (19%)

Query: 3   TLFIDFETR------------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-- 48
            +  D ET             S + +    +    E+     F     +    L      
Sbjct: 419 YVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQFEEFIDPGFHLS--EQTTNLTSITDE 476

Query: 49  --HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVLA 100
             H     + + +   +   D  +V HN  F+   +          +I  +  I TL LA
Sbjct: 477 MVHGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYVRHGMPEIK-NPIIDTLTLA 535

Query: 101 RSNGL---PSALKAVGEALKLS 119
           R          L  + +   ++
Sbjct: 536 RFLYPNMRGYRLNTLAKKFDVN 557


>gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
 gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
          Length = 1438

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 28/142 (19%)

Query: 3   TLFIDFETR------------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-- 48
            +  D ET             S + +    +    E+     F     +    L      
Sbjct: 419 YVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQFEEFIDPGFHLS--EQTTNLTSITDE 476

Query: 49  --HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVLA 100
             H     + + +   +   D  +V HN  F+   +          +I  +  I TL LA
Sbjct: 477 MVHGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYVRHGMPEIK-NPIIDTLTLA 535

Query: 101 RSNGL---PSALKAVGEALKLS 119
           R          L  + +   ++
Sbjct: 536 RFLYPNMRGYRLNTLAKKFDVN 557


>gi|218783107|ref|YP_002434425.1| hypothetical protein Dalk_5288 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764491|gb|ACL06957.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 248

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 25/180 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LWDCVHDPVMPQVLKEA 60
            T F+D ET         G+ +   ++ VI     +D   V    +  + P     + E 
Sbjct: 83  KTAFLDIET--------SGLDQDMHEITVIGV---YDGQKVFSYVNGFNLPDFEIDIAEY 131

Query: 61  LENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
                  ++  N + F+   ++  F         I  +   R  G    LK + + L +S
Sbjct: 132 -----DMVITFNGAMFDLPFIRRSFPSITLPEGHIDLMHALRKLGYRGGLKKIEKDLGIS 186

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             +  +G                  RN             Y   D+   + + +      
Sbjct: 187 RGEDIDG-----LGGYEAVLLWRAWRNGDKAA--LDRLIAYNTADIVNLKPLMELAYDRL 239


>gi|119944269|ref|YP_941949.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
 gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
          Length = 239

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 44/164 (26%), Gaps = 35/164 (21%)

Query: 1   MATLFIDFETRSPI----------------------DLTKCGICKYAE-DVCVILFAFGF 37
           +  + +D ET                           LT      Y + D  +   A   
Sbjct: 7   IRQVVLDTETTGMNKGGTIYVGHRIIEIGCVEVINRRLTGRHFHVYVKPDREIDPEAIAV 66

Query: 38  DD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHR- 92
                  L D      +     E +      +V HN+ F+   +       N        
Sbjct: 67  HGITDEFLHDKPAFSDIADEFIEFI--KGAELVIHNAPFDVGFMDQEFRFLNKRTKPTAE 124

Query: 93  ---WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIA 131
                 TLV+AR       ++L A+   L + ++       L+ 
Sbjct: 125 ISTITDTLVMARKMYPGKRASLDALCRELGIDNKHRVLHGALLD 168


>gi|195937492|ref|ZP_03082874.1| ribonuclease D [Escherichia coli O157:H7 str. EC4024]
 gi|256018008|ref|ZP_05431873.1| ribonuclease D [Shigella sp. D9]
 gi|261227700|ref|ZP_05941981.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258135|ref|ZP_05950668.1| ribonuclease D [Escherichia coli O157:H7 str. FRIK966]
 gi|293405300|ref|ZP_06649292.1| ribonuclease D [Escherichia coli FVEC1412]
 gi|298380942|ref|ZP_06990541.1| ribonuclease D [Escherichia coli FVEC1302]
 gi|300816311|ref|ZP_07096533.1| ribonuclease D [Escherichia coli MS 107-1]
 gi|300823140|ref|ZP_07103273.1| ribonuclease D [Escherichia coli MS 119-7]
 gi|300899043|ref|ZP_07117330.1| ribonuclease D [Escherichia coli MS 198-1]
 gi|300917626|ref|ZP_07134277.1| ribonuclease D [Escherichia coli MS 115-1]
 gi|300924870|ref|ZP_07140803.1| ribonuclease D [Escherichia coli MS 182-1]
 gi|307314118|ref|ZP_07593730.1| ribonuclease D [Escherichia coli W]
 gi|309794180|ref|ZP_07688604.1| ribonuclease D [Escherichia coli MS 145-7]
 gi|331663292|ref|ZP_08364202.1| ribonuclease D [Escherichia coli TA143]
 gi|331668492|ref|ZP_08369340.1| ribonuclease D [Escherichia coli TA271]
 gi|331673338|ref|ZP_08374106.1| ribonuclease D [Escherichia coli TA280]
 gi|331677680|ref|ZP_08378355.1| ribonuclease D [Escherichia coli H591]
 gi|291427508|gb|EFF00535.1| ribonuclease D [Escherichia coli FVEC1412]
 gi|298278384|gb|EFI19898.1| ribonuclease D [Escherichia coli FVEC1302]
 gi|300357343|gb|EFJ73213.1| ribonuclease D [Escherichia coli MS 198-1]
 gi|300415143|gb|EFJ98453.1| ribonuclease D [Escherichia coli MS 115-1]
 gi|300418949|gb|EFK02260.1| ribonuclease D [Escherichia coli MS 182-1]
 gi|300524294|gb|EFK45363.1| ribonuclease D [Escherichia coli MS 119-7]
 gi|300531001|gb|EFK52063.1| ribonuclease D [Escherichia coli MS 107-1]
 gi|306906256|gb|EFN36773.1| ribonuclease D [Escherichia coli W]
 gi|308122085|gb|EFO59347.1| ribonuclease D [Escherichia coli MS 145-7]
 gi|315061107|gb|ADT75434.1| ribonuclease D [Escherichia coli W]
 gi|320188500|gb|EFW63162.1| Ribonuclease D [Escherichia coli O157:H7 str. EC1212]
 gi|320197983|gb|EFW72591.1| Ribonuclease D [Escherichia coli EC4100B]
 gi|320641655|gb|EFX11043.1| ribonuclease D [Escherichia coli O157:H7 str. G5101]
 gi|320647014|gb|EFX15847.1| ribonuclease D [Escherichia coli O157:H- str. 493-89]
 gi|320652296|gb|EFX20594.1| ribonuclease D [Escherichia coli O157:H- str. H 2687]
 gi|320657898|gb|EFX25660.1| ribonuclease D [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658471|gb|EFX26165.1| ribonuclease D [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668369|gb|EFX35196.1| ribonuclease D [Escherichia coli O157:H7 str. LSU-61]
 gi|323158715|gb|EFZ44729.1| ribonuclease D [Escherichia coli E128010]
 gi|323186449|gb|EFZ71797.1| ribonuclease D [Escherichia coli 1357]
 gi|323378318|gb|ADX50586.1| ribonuclease D [Escherichia coli KO11]
 gi|323948311|gb|EGB44299.1| ribonuclease D [Escherichia coli H120]
 gi|324018061|gb|EGB87280.1| ribonuclease D [Escherichia coli MS 117-3]
 gi|324118864|gb|EGC12753.1| ribonuclease D [Escherichia coli E1167]
 gi|326342179|gb|EGD65960.1| Ribonuclease D [Escherichia coli O157:H7 str. 1044]
 gi|326343729|gb|EGD67491.1| Ribonuclease D [Escherichia coli O157:H7 str. 1125]
 gi|331059091|gb|EGI31068.1| ribonuclease D [Escherichia coli TA143]
 gi|331063686|gb|EGI35597.1| ribonuclease D [Escherichia coli TA271]
 gi|331069536|gb|EGI40923.1| ribonuclease D [Escherichia coli TA280]
 gi|331074140|gb|EGI45460.1| ribonuclease D [Escherichia coli H591]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|328945970|gb|EGG40117.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis
           SK1087]
          Length = 814

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 51/295 (17%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCHGIFLRRPQKLTSEKKLSQDFLTNLYLM 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG--LHLEDLTETTCQRVL 263
              ER +  +    +   L        + +T L    G  L +    +   ++VL
Sbjct: 242 GLEERPEQLKFACFMEEALNQQEPSFLEAQTGLGKTFGYLLPILSRGK---EKVL 293


>gi|323259856|gb|EGA43487.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 243

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 7   RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFNL---DI 88
                  + D  +    K    +             +V HN+ F+   +   F L   DI
Sbjct: 61  EAFGVHGIADEFLLD--KPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDI 118

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 119 PKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 167


>gi|300774644|ref|ZP_07084507.1| polysaccharide biosynthesis protein [Chryseobacterium gleum ATCC
           35910]
 gi|300506459|gb|EFK37594.1| polysaccharide biosynthesis protein [Chryseobacterium gleum ATCC
           35910]
          Length = 233

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 68/245 (27%), Gaps = 77/245 (31%)

Query: 2   ATLFIDFETR----SPIDLTKCGICKY------------------------AEDVCVILF 33
             LF+D ET     S  DL++     +                        AE   +I  
Sbjct: 9   RVLFLDIETVPQAGSWNDLSETEQYLWDKKTKFQRKEDVTAEEFYDRAGIMAEFGKIICI 68

Query: 34  AFG-FDDHPV---ELWDCVHDPVMPQVLKEALENT---DVTIVAHNSY-FERTVLKACFN 85
             G  + +     + +    +  M Q   E   +    +V + AHN   F+   +   + 
Sbjct: 69  TIGMVEKNETLKIKSFSGHDEKKMLQEFGEIFNSPRLYNVILCAHNGKEFDFPWIARRYL 128

Query: 86  LDI--PIHRW------------ICTLVL-------ARSNGLPSALKAVGEALKLSSQKME 124
           ++   P   +            I T+ L       +       +L+ +     + + K  
Sbjct: 129 INGMQPPAPFQMFGKKPWEIPHIDTMELWKFGDYKSFV-----SLELLAHVFGIPTPKD- 182

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
                          +     +     +  +   +YC+ DV +T     R        + 
Sbjct: 183 -------------DIDGSMVSSIYYIEKDLQRIVDYCEKDV-LTLANIFRRMRQEDLLKR 228

Query: 185 LWYLD 189
              LD
Sbjct: 229 NINLD 233


>gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155]
 gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155]
          Length = 242

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 47/164 (28%), Gaps = 51/164 (31%)

Query: 1   MATLF-------IDFETRSPIDLTKCGICKYAEDVCVILFAF------------------ 35
           M  +        +D ET     + +     Y     +I                      
Sbjct: 1   MNIISNANRQVILDTETTG---MNQGSGAIYLGH-RIIEIGCVEVVNRRLTGRYYHQYIN 56

Query: 36  ---GFDDHPVELWDCVHDP--------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
                D   + +     +          + Q     ++  ++  VAHN+ F+ + +   F
Sbjct: 57  PGQAIDPEAIAVHGITDERVSKEPRFHQVAQDFINFIDGAEI--VAHNANFDVSFMDHEF 114

Query: 85  NL-------DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLS 119
           +L          I + + TLV+A+         L A+ +   + 
Sbjct: 115 SLLQPRGPKTADICQILDTLVIAKFLHPGQKNNLDALCKRYGVD 158


>gi|170019851|ref|YP_001724805.1| ribonuclease D [Escherichia coli ATCC 8739]
 gi|256022532|ref|ZP_05436397.1| ribonuclease D [Escherichia sp. 4_1_40B]
 gi|293415119|ref|ZP_06657762.1| ribonuclease D [Escherichia coli B185]
 gi|300951410|ref|ZP_07165251.1| ribonuclease D [Escherichia coli MS 116-1]
 gi|300956696|ref|ZP_07168970.1| ribonuclease D [Escherichia coli MS 175-1]
 gi|301645686|ref|ZP_07245613.1| ribonuclease D [Escherichia coli MS 146-1]
 gi|307138464|ref|ZP_07497820.1| ribonuclease D [Escherichia coli H736]
 gi|331642413|ref|ZP_08343548.1| ribonuclease D [Escherichia coli H736]
 gi|331653208|ref|ZP_08354213.1| ribonuclease D [Escherichia coli M718]
 gi|169754779|gb|ACA77478.1| ribonuclease D [Escherichia coli ATCC 8739]
 gi|260449075|gb|ACX39497.1| ribonuclease D [Escherichia coli DH1]
 gi|291432767|gb|EFF05746.1| ribonuclease D [Escherichia coli B185]
 gi|300316496|gb|EFJ66280.1| ribonuclease D [Escherichia coli MS 175-1]
 gi|300449336|gb|EFK12956.1| ribonuclease D [Escherichia coli MS 116-1]
 gi|301076058|gb|EFK90864.1| ribonuclease D [Escherichia coli MS 146-1]
 gi|323937062|gb|EGB33342.1| ribonuclease D [Escherichia coli E1520]
 gi|323940530|gb|EGB36721.1| ribonuclease D [Escherichia coli E482]
 gi|331039211|gb|EGI11431.1| ribonuclease D [Escherichia coli H736]
 gi|331049306|gb|EGI21378.1| ribonuclease D [Escherichia coli M718]
 gi|332343528|gb|AEE56862.1| ribonuclease D [Escherichia coli UMNK88]
 gi|333006772|gb|EGK26269.1| ribonuclease D [Shigella flexneri K-272]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|90416003|ref|ZP_01223936.1| ribonuclease D [marine gamma proteobacterium HTCC2207]
 gi|90332377|gb|EAS47574.1| ribonuclease D [marine gamma proteobacterium HTCC2207]
          Length = 374

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 71/294 (24%), Gaps = 57/294 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E           +        + L     D     L D      + Q L   L 
Sbjct: 26  ELAIDTE----------FMRSDTFFAKLALIQLS-DGEQCWLIDTPAIEQL-QPLTALLN 73

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
              +T+V H+   +  VL       +   +   + V A    +  ++        +   +
Sbjct: 74  GPQLTLVFHSCGEDLEVLDQVL--SVRPKKLFDSQVAAGIVNIGYSMGYARLVENMLQIE 131

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF---------- 172
           + +         +  +                     Y   DV     I+          
Sbjct: 132 LGKEDTRSDWLARPLS----------------DRQKRYAADDVLYLFRIYKLLLELLEQQ 175

Query: 173 ----KRLEPLSSKEQ----ELWYLDQTINDRG-YCVDVALAHTLNQIVDVE------RTK 217
                  E +   ++        LD  +  +G + +D      L ++ +          K
Sbjct: 176 QRQSWFAEEMLDLQRVAAERREALDYYLRVKGAWRLDALSLAVLKRLCEWRERAARALDK 235

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
               +      L  ++     +     ++             ++VL     +  
Sbjct: 236 PRSHIVKDNVLLELANNKPTHMSQLHQIDDWYSRSVKR--FGEQVLQEIANVDH 287


>gi|329898076|ref|ZP_08272286.1| Ribonuclease D [gamma proteobacterium IMCC3088]
 gi|328920975|gb|EGG28399.1| Ribonuclease D [gamma proteobacterium IMCC3088]
          Length = 373

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 47/164 (28%), Gaps = 27/164 (16%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T  P    K  + + A    + L        PV + D          L 
Sbjct: 28  VVLDTEFVRERTYYP----KPALVQLAGAGHISLV------DPVAVTDASA-------LS 70

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAVGEA 115
             LE+     V H+   +  V +A      PI  W  T V A   G   A      V   
Sbjct: 71  SLLESERTLKVVHSGSEDLEVFQAWLG--CPIKGWFDTQVAAALLGYGYAIGYRNIVETF 128

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           L     K E   + + R       +              RL+ E
Sbjct: 129 LGEELDKGETRSDWLQRPLSDSQLQYAIADVLYLEPVFERLYQE 172


>gi|323186982|gb|EFZ72300.1| ribonuclease D [Escherichia coli RN587/1]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
 gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
          Length = 332

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 40/139 (28%), Gaps = 26/139 (18%)

Query: 6   IDFETRSPI-DLTKCGICKYAEDVC-------VILFAFGFDDHPVELWDCVHDPVMPQVL 57
           +D ET     D        Y  D           L     D  P  +        M Q  
Sbjct: 30  VDVETTGLARDDRIVSAAVYRLDAQGNVEDHWYTLVNPRRDPGPTWIHGLTS--AMLQD- 86

Query: 58  KEALEN---------TDVTIVAHNSYFERTVLKACFNLDIPIHRWI---CTLVLARSNGL 105
                +          D  +VAHN+ F+  ++   +             CT+ L++   L
Sbjct: 87  APLFADIAEEFAGRLADRVLVAHNAIFDWQMIAREYARASATAPVRQRLCTIALSKELNL 146

Query: 106 P---SALKAVGEALKLSSQ 121
           P     L+++     +  Q
Sbjct: 147 PLPNHKLESLAAHYGVVQQ 165


>gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
 gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
           16841]
          Length = 1512

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA 100
           + D      +     +  E     +VAHN+ F+ + +K       ++      I T+ LA
Sbjct: 548 VIDAPKIEEILPEFMKFCE--GAIMVAHNAEFDMSFIKKNCKDQGIE-REFTIIDTVALA 604

Query: 101 RSNGLPSA---LKAVGEALKLS 119
           R          L  V +AL +S
Sbjct: 605 RILLPNLNRFKLDTVAKALNVS 626


>gi|71898238|ref|ZP_00680412.1| Ribonuclease D [Xylella fastidiosa Ann-1]
 gi|71731977|gb|EAO34034.1| Ribonuclease D [Xylella fastidiosa Ann-1]
          Length = 339

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 47/175 (26%), Gaps = 26/175 (14%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L     +D  + +   V    M   L   L   +V  + H++  +    K      
Sbjct: 13  PELALVQIAIEDEILLVDPLVPG--MTDALGLWLAAPNVIKIMHSASEDLIAFKYACG-- 68

Query: 88  IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +       T + A   GL   +   K V +   +   K E   + + R            
Sbjct: 69  VLPRPLFDTQIGAALTGLGGGMGYQKLVAKVTNVELGKGETRSDWMHRPLTPAQ------ 122

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                         +Y   DV     +   L    ++     +L++        +
Sbjct: 123 -------------LDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCTRLTDNI 164


>gi|302546442|ref|ZP_07298784.1| putative DNA polymerase III epsilon subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464060|gb|EFL27153.1| putative DNA polymerase III epsilon subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 335

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 22/134 (16%)

Query: 6   IDFETRSPI-DLTKCGICKYAEDVC-------VILFAFGFDDHPVELWDCVHDPVMPQVL 57
           +D ET     D        Y  D           L     D  PV +     + +    L
Sbjct: 29  VDVETTGLARDDRIVSAAVYQLDARGAVQDRWYTLVNPQRDPGPVWIHGLTRETLSDAPL 88

Query: 58  KEALE-------NTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSNGLP- 106
              +        +  V  VAHN+ F+ +++   F     + P+ + +CT+ L++  GLP 
Sbjct: 89  FPDIATAFAERLDGRVL-VAHNAAFDWSMIAREFARSKTEAPVRQRLCTIALSKELGLPL 147

Query: 107 --SALKAVGEALKL 118
               L+ +     +
Sbjct: 148 ANHKLETLAAHYGV 161


>gi|262212147|gb|ACY35690.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y    +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGADDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|66395669|ref|YP_240034.1| ORF013 [Staphylococcus phage 47]
 gi|209363557|ref|YP_002267975.1| hypothetical protein phi2958PVL_gp05 [Staphylococcus phage
           phi2958PVL]
 gi|257428268|ref|ZP_05604666.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282905892|ref|ZP_06313747.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282919259|ref|ZP_06326994.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|284024544|ref|ZP_06378942.1| DNA polymerase III subunit epsilon [Staphylococcus aureus subsp.
           aureus 132]
 gi|62636093|gb|AAX91204.1| ORF013 [Staphylococcus phage 47]
 gi|208973058|dbj|BAG74374.1| hypothetical protein [Staphylococcus phage phi2958PVL]
 gi|257275109|gb|EEV06596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|282317069|gb|EFB47443.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
           C427]
 gi|282331184|gb|EFB60698.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 306

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 35/151 (23%)

Query: 1   MATLFIDFET-----RSPIDLT-------KCGICKYAE----------DVCVILFAFGFD 38
           M  + ID ET      S   +        K     Y            +  +   +    
Sbjct: 1   MDFVAIDVETANEQRSSICSIALLKFQDNKMRDAIYTHINPETYFSSINTSIHGIS---- 56

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWIC 95
               ++ D      M + +   L+N    IVAHN+ F+   L      +NL +P +++ C
Sbjct: 57  --EEDVMDSPKMYQMHEAIIRFLDN--HIIVAHNTSFDMYALCDSFKKYNLPLPSNQYFC 112

Query: 96  TLVLAR--SNGLPSALKAVGEALKLSSQKME 124
           T  L++   N     L+ + E   + +++  
Sbjct: 113 TYRLSKDLYNLPSYRLQDLAEHFDIKNEEYH 143


>gi|7510239|pir||T31635 hypothetical protein Y57A10A.m - Caenorhabditis elegans
          Length = 1171

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 82/297 (27%), Gaps = 61/297 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW---DCVHDPVMPQ---- 55
            LF D E                 D  +   A          W     +++  +P+    
Sbjct: 138 ILFFDIE-------------LVVRDGTLPTLAIALGRDAWYGWCSDRLIYESEIPEIPTK 184

Query: 56  -VLKEALENT-DVTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
             L    E   +  I+ HN  F+R    +A  +++    R++ T+ ++        +   
Sbjct: 185 ADLIPIGEIGMEKVIIGHNVGFDRARCREAYQSINGSKIRFMDTMSMS---IPMYGMADH 241

Query: 113 GEAL---------------------KLSSQKMEEGKE-LIARFCKGETHECLYDRNKPNH 150
            ++L                     ++S   +    + L                     
Sbjct: 242 QQSLYEMYDVETNDSHSDWMNAWKGRVSKNSLVAVHDHLYPDKAINAEGFSKKTMRASFV 301

Query: 151 REAWRLFGE-------YCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-TINDRGYCVDVA 202
           ++      E       YC  D  +  EI+ RL P   K           +N     + + 
Sbjct: 302 KDPIEQIREDFQPLMSYCARDNILCAEIYFRLWPEFIKRFPHPATLSGMLNMGNVYLPIN 361

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH---LEDLTE 256
               +    +      +Q+  + T  ++ S+R + K       E G         ++
Sbjct: 362 SYWKM--FYEKNVQTCEQKKTAATRKIIESARLVAKRLDDEGEEIGKTQKIPIKKSK 416



 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 101/344 (29%), Gaps = 56/344 (16%)

Query: 338  ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
             + +   H      ++     +I   +++ V A  G +LV AD+   E + LA + G+  
Sbjct: 747  TISRRSVHKLWVTLTNQSTGHVIGTGIKAMVQAPAGYRLVGADVDSQE-QWLAALYGDAS 805

Query: 398  ------------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG- 444
                           AF         +     +   A   K  R   KV+  A  Y  G 
Sbjct: 806  AEKRLPLEKRVAGKTAFSNMMLAGSKSDNTDLHSVVASQLKISRNHAKVLNYARLYGSGE 865

Query: 445  AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG--TA 502
              A + +    GL  +             + + A+     ++ N       +  +     
Sbjct: 866  THAGKHLMRVGGLKQSEAESTASQLFKLTKGDVAKYMKVDVRMNCVVDKYIEEMVENSDV 925

Query: 503  CERV-KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
            C+ +         +  S+  +E  +  +  + +  +++        L+Y   +  +    
Sbjct: 926  CKILTIDGIYYMPAYTSQFASETVRFEDWLLSHYSSLLNGSSEPDSLIYSIYENPDEP-- 983

Query: 562  LPSGRSLVYRDVGNN--RSYLNTTTRQLTREYT-------------------------YG 594
                R L      ++       +      R                            Y 
Sbjct: 984  ----RRLFVGGYESSTFNFLETSAAAHDLRTPILGCQIADSLGKLPEGTPDSAYFDRKYK 1039

Query: 595  GKLTENIVQAVSRDIL------AEGMMNATKAGYDIVLTVHDEI 632
              +   IVQ+ + D L       + + +  K     V+++HDE+
Sbjct: 1040 RSVMNWIVQSSAVDFLHLLLVSMQWLCDTYKIDARFVISIHDEV 1083


>gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1444

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 47/185 (25%), Gaps = 50/185 (27%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------------- 43
           ET    D+   G+     +  + L A    D  +                          
Sbjct: 427 ETYVVFDVETTGLSA-VYNTIIELAAVKVKDGEIIDRFMLFANPGHPLSVTTMELTGITD 485

Query: 44  --LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
             + D      +     +   +   T+VAHN+ F+   L    A        +  I TL 
Sbjct: 486 EMVKDAPKPDEVLARFVDWAGDA--TLVAHNASFDIGFLNAGLARMGRGKIANPVIDTLE 543

Query: 99  LARSNGL---PSALKAVGE--------ALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           LAR          L  + +          +        G  L+    + E       R  
Sbjct: 544 LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLLKEAEE------RGI 597

Query: 148 PNHRE 152
             H E
Sbjct: 598 LFHDE 602


>gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
 gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC
           29799]
          Length = 1390

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---S 107
           + ++  LE   D  + AHN+ F+   +      + +         TL+LA++        
Sbjct: 436 EAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTSI-DTLILAQNLLPDLGKY 494

Query: 108 ALKAVGEALKLSSQK 122
            L  V E L+L   K
Sbjct: 495 KLDIVAEHLRLPPFK 509


>gi|302037245|ref|YP_003797567.1| hypothetical protein NIDE1916 [Candidatus Nitrospira defluvii]
 gi|300605309|emb|CBK41642.1| conserved protein of unknown function [Candidatus Nitrospira
           defluvii]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 47/190 (24%), Gaps = 40/190 (21%)

Query: 29  CVILFA---FGFDDHP--VELWDCVHDPVMPQVLKEAL--ENTDVTIVAHN-SYFERTVL 80
            ++      F  +  P     W   ++  + +     L         + HN   F+   +
Sbjct: 67  RIVCIGLLEFSDNLEPRGATSWYGANEQELLRRFWSHLGQLRPS-LFITHNGLNFDLPFI 125

Query: 81  KACFNL------------DIPIHRWICTL-VLA-RSNGLPSALKAVGEALKLSSQKMEEG 126
           K    +                     T+ + +   N     L  +  AL + S+     
Sbjct: 126 KKRSIIQQVKPTMEINLAKFRAEPVYDTMAIWSNWDNRGWVKLDVLARALNVESKS---- 181

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
                                       +    YC  D  VT   + R+       +E+ 
Sbjct: 182 ------------GSGSQVAQM-WADGQGKEIALYCLQDTYVTYGCYCRMNFRQPISREIV 228

Query: 187 YLDQTINDRG 196
            L   + D G
Sbjct: 229 LLRPELVDVG 238


>gi|269103055|ref|ZP_06155752.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162953|gb|EEZ41449.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 382

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 63/217 (29%), Gaps = 23/217 (10%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D +    M + L + L +  V  V H    +  V +            + T
Sbjct: 47  FDGKQLSLIDPLAIEDM-EPLWDLLRDQSVMKVLHACGEDLEVFQHHAG--CLPVPMLDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +        +    ++++G+       +  T                  
Sbjct: 104 QLMAAFLGHGVSTGFGALVKEYVGVELDKGEARTNWLARPLT----------------DR 147

Query: 157 FGEYCKGDVTVTREIFKRLEPLS----SKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
              Y   DV     +++ L          +      + T+  R    D + A+   +   
Sbjct: 148 QLNYAAADVFYLLPLYETLLEKVGAAGYCKALEQECNATMLKRVKQADPSKAYLNIKNAW 207

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGL 249
               K    L+ L    V  S+  +    ++  E  L
Sbjct: 208 QLNPKQLAILQKLAAWRVLESQKRDIAVNFIVKELNL 244


>gi|84496154|ref|ZP_00995008.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
 gi|84382922|gb|EAP98803.1| hypothetical protein JNB_01505 [Janibacter sp. HTCC2649]
          Length = 572

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 53/204 (25%), Gaps = 32/204 (15%)

Query: 4   LFIDFETR----SPIDLTKCGICKYAEDVCVIL---------------FAFGFDDHPVEL 44
           + +D ET     S   +T+ G  K      V+                 +         +
Sbjct: 21  VVVDLETTGGSPSECGITEIGAVKVRA-GEVLGEFQTFVNPGQPIPAFISVLTGITDAMV 79

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTLVLAR 101
            D            E      V  VAHN+ F+ + LKA       D P    + T+ LAR
Sbjct: 80  RDAPRVEPALVAFLE-FAAGSVL-VAHNAGFDVSFLKAACGRAERDWPSFPVVDTVHLAR 137

Query: 102 SN-----GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                       L ++      ++      + L       +    L  R       +   
Sbjct: 138 QLVTRDEAPNHRLGSLAVLFGATTTPDH--RALHDARATVDVLHGLIARVGSLGVHSLEE 195

Query: 157 FGEYCKGDVTVTREIFKRLEPLSS 180
              Y       TR      + L  
Sbjct: 196 LKAYSSRVPAATRRKRHLADGLPE 219


>gi|301327561|ref|ZP_07220781.1| ribonuclease D [Escherichia coli MS 78-1]
 gi|300845871|gb|EFK73631.1| ribonuclease D [Escherichia coli MS 78-1]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQREYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|260868323|ref|YP_003234725.1| ribonuclease D [Escherichia coli O111:H- str. 11128]
 gi|257764679|dbj|BAI36174.1| ribonuclease D [Escherichia coli O111:H- str. 11128]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|229472323|gb|ACQ72676.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R     S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RPLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
 gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
          Length = 1438

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 28/142 (19%)

Query: 3   TLFIDFETR------------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-- 48
            +  D ET             S + +    +    E+     F     +    L      
Sbjct: 419 YVVFDTETTGLSAIYDRVIELSAVKMKNSNVIDQFEEFIDPGFHLS--EQTTNLTSITDE 476

Query: 49  --HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVLA 100
             H     + + +   +   D  +V HN  F+   +          +I  +  I TL LA
Sbjct: 477 MVHGSKSEEEVFKLFRDFCEDAIVVGHNVTFDIGFMNTGYVRHGMPEIK-NPIIDTLTLA 535

Query: 101 RSNGL---PSALKAVGEALKLS 119
           R          L  + +   ++
Sbjct: 536 RFLYPNMRGYRLNTLAKKFDVN 557


>gi|15802217|ref|NP_288240.1| ribonuclease D [Escherichia coli O157:H7 EDL933]
 gi|12515844|gb|AAG56793.1|AE005403_4 RNase D, processes tRNA precursor [Escherichia coli O157:H7 str.
           EDL933]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|262212227|gb|ACY35730.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R+  + S G+ +V A+L+GIE R+L+      +  +        D++     +    
Sbjct: 10  PRFRALFLPSPGQVMVAANLSGIELRMLSHFLAKYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKRGKEIREAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E    +   G  
Sbjct: 121 DKLLAAIKTASERGFIEAIDGRK 143


>gi|254673235|emb|CBA08224.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha275]
 gi|325144796|gb|EGC67087.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
           M01-240013]
          Length = 244

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 64  EVLEGK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 P 148
            
Sbjct: 178 D 178


>gi|149186862|ref|ZP_01865172.1| ribonuclease D [Erythrobacter sp. SD-21]
 gi|148829529|gb|EDL47970.1| ribonuclease D [Erythrobacter sp. SD-21]
          Length = 411

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 20/166 (12%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL-ENTDVTIVAHNSYFERTVLKACFNL 86
             + L     ++      D + D +  Q L + L +N +V  V H    +  ++      
Sbjct: 41  PELCLVQIA-NEEEAAAIDPLADGIDLQPLWDLLCDNEEVLKVFHAGGQDVEIVYNFTGK 99

Query: 87  DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
               H    T +   +                S  +      L+  +      +     +
Sbjct: 100 T--PHPIFDTQIAMMAI---------------SQNEQIGYANLVESWMGITVDKGARFTD 142

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                       EY  GDVT   +IF  +     K     +LD  +
Sbjct: 143 WGRRPL-TDRQIEYAIGDVTHLSKIFPMILKKLIKTGRGVWLDAEM 187


>gi|110805403|ref|YP_688923.1| ribonuclease D [Shigella flexneri 5 str. 8401]
 gi|110614951|gb|ABF03618.1| RNase D, processes tRNA precursor [Shigella flexneri 5 str. 8401]
 gi|281600843|gb|ADA73827.1| RNase D [Shigella flexneri 2002017]
 gi|332759595|gb|EGJ89901.1| ribonuclease D [Shigella flexneri K-671]
 gi|333018392|gb|EGK37691.1| ribonuclease D [Shigella flexneri K-304]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|329731357|gb|EGG67723.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 784

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 85/280 (30%), Gaps = 33/280 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV---LARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     + I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDYNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPN---------HREAWRLFGEY 160
           +                K +I  F K E       +             +   + +  +Y
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQY 202

Query: 161 CKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALAHTLNQIVDVERTK 217
               +  + E F           ++     +    +     VD        Q + +  T 
Sbjct: 203 DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVDQLGLTYRPQQLYLAETI 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKLTPQA 273
           LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K  P  
Sbjct: 263 LDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAM 322

Query: 274 IQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            +  N ++     +S    ++  L+  +  D      +  
Sbjct: 323 NEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNI 362


>gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes FSL F2-208]
          Length = 1447

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 72/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 430 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 488

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 489 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 546

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     +   H   
Sbjct: 547 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDFHDSL 606

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 607 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 666

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 667 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 714


>gi|324327507|gb|ADY22767.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 88/323 (27%), Gaps = 43/323 (13%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AF-----GFDDHPVELWDCVH-- 49
             + IDFET         + +    KY     V  F ++        D    L    +  
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYR 68

Query: 50  --DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-- 100
             D    + +            IVAHN+ F+   LK       L  P ++ I T+ LA  
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFLAKK 128

Query: 101 RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
              +     L+ +   L +         + I      +    + +  +   +    +  E
Sbjct: 129 YMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASIEE--EAKRKSNTEVLDE 186

Query: 160 YCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
               +      +  + +           YLD         + V         +       
Sbjct: 187 TAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTDILEDD 244

Query: 219 DQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS---SNKKLTPQAIQ 275
            +E+ +      +    +   +  L              T + VL       +     +Q
Sbjct: 245 VKEICTSLACEPALKSEVGNTRIMLN-------------TLEDVLKLESYILEQYDFVLQ 291

Query: 276 VFNNRMRASRSAVLKLNTLVEAM 298
             +   ++  +A  KL   +  M
Sbjct: 292 ALSEYKQSEMNADEKLKEYLNMM 314


>gi|262342199|gb|ACY54610.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y    +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGADDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|261868455|ref|YP_003256377.1| DNA polymerase III subunit epsilon [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413787|gb|ACX83158.1| DNA polymerase III, epsilon subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 253

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 59/225 (26%), Gaps = 37/225 (16%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V +    +  +   ++   + PV P  +K  
Sbjct: 9   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPDAIKVH 68

Query: 59  ----EALENT-----------DVTI----VAHNSYFERTVLKACF---NLDIPIHRW--- 93
               E L +            +       + HN+ F+   +   F   NL I  +     
Sbjct: 69  GITDEMLADKPDFSQVANQFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICLV 128

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNH 150
             TL +AR         L A+   L + + K    G  L A             +     
Sbjct: 129 TDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDADILADVYLAMTGGQTSLFD 188

Query: 151 REAWRLFGEYCKGDVTVT------REIFKRLEPLSSKEQELWYLD 189
                +     +  V  T        +    E       E   L 
Sbjct: 189 ESEPEIIQHAGEQQVQSTVVFSHNLRLLTPTEEELQAHLEYLKLI 233


>gi|257052533|ref|YP_003130366.1| hypothetical protein Huta_1457 [Halorhabdus utahensis DSM 12940]
 gi|256691296|gb|ACV11633.1| conserved hypothetical protein [Halorhabdus utahensis DSM 12940]
          Length = 251

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 48/165 (29%), Gaps = 26/165 (15%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
           F D ET                   V   +                 +    L+E   + 
Sbjct: 86  FFDIETTGLD----------QRHDTVTTVSVRQGGETKTFV--RDRDLTADRLREVFADA 133

Query: 65  DVTIVAHNSY-FERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSALKAVGEALKLSSQK 122
           D+  V+ N   F+   L+  F+LD  + R     +   R   L   LK + + + +   +
Sbjct: 134 DLL-VSFNGKRFDVPFLQQSFDLDGVLDRPHLDLMYPCRQIDLTGGLKQIEKDVGIQRDR 192

Query: 123 -MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
               GK+ +  + + E               A      Y + DV 
Sbjct: 193 PDLSGKDAVRLWYEAERG----------DDAALETLISYNREDVD 227


>gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           monocytogenes HCC23]
 gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
           monocytogenes L99]
          Length = 1443

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 72/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 426 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 484

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 485 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 542

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     +   H   
Sbjct: 543 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDFHDSL 602

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 603 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 662

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 663 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 710


>gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
 gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Carnobacterium sp. AT7]
          Length = 1395

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNG 104
            +  +  + KE   ++   +VAHN+ F+   L        N+    +  I TL L+R   
Sbjct: 490 SEEEVLTLFKEFAGDS--ILVAHNASFDMGFLNTSNAKH-NIPDAENPVIDTLELSRFLH 546

Query: 105 L---PSALKAVGEALKLS 119
                  L  + +   ++
Sbjct: 547 PQFKSHRLNTLAKKYGVN 564


>gi|117623964|ref|YP_852877.1| ribonuclease D [Escherichia coli APEC O1]
 gi|227885769|ref|ZP_04003574.1| ribonuclease D [Escherichia coli 83972]
 gi|237705754|ref|ZP_04536235.1| ribonuclease D [Escherichia sp. 3_2_53FAA]
 gi|300994259|ref|ZP_07180813.1| ribonuclease D [Escherichia coli MS 45-1]
 gi|301050852|ref|ZP_07197705.1| ribonuclease D [Escherichia coli MS 185-1]
 gi|306814949|ref|ZP_07449105.1| ribonuclease D [Escherichia coli NC101]
 gi|312967002|ref|ZP_07781220.1| ribonuclease D [Escherichia coli 2362-75]
 gi|331657844|ref|ZP_08358806.1| ribonuclease D [Escherichia coli TA206]
 gi|115513088|gb|ABJ01163.1| Ribonuclease D [Escherichia coli APEC O1]
 gi|222033551|emb|CAP76292.1| ribonuclease D [Escherichia coli LF82]
 gi|226900511|gb|EEH86770.1| ribonuclease D [Escherichia sp. 3_2_53FAA]
 gi|227837342|gb|EEJ47808.1| ribonuclease D [Escherichia coli 83972]
 gi|300297490|gb|EFJ53875.1| ribonuclease D [Escherichia coli MS 185-1]
 gi|300406325|gb|EFJ89863.1| ribonuclease D [Escherichia coli MS 45-1]
 gi|305851597|gb|EFM52050.1| ribonuclease D [Escherichia coli NC101]
 gi|307553822|gb|ADN46597.1| ribonuclease D [Escherichia coli ABU 83972]
 gi|307626717|gb|ADN71021.1| ribonuclease D [Escherichia coli UM146]
 gi|312288466|gb|EFR16368.1| ribonuclease D [Escherichia coli 2362-75]
 gi|312946400|gb|ADR27227.1| ribonuclease D [Escherichia coli O83:H1 str. NRG 857C]
 gi|315286519|gb|EFU45954.1| ribonuclease D [Escherichia coli MS 110-3]
 gi|315290392|gb|EFU49767.1| ribonuclease D [Escherichia coli MS 153-1]
 gi|315299924|gb|EFU59162.1| ribonuclease D [Escherichia coli MS 16-3]
 gi|323952305|gb|EGB48178.1| ribonuclease D [Escherichia coli H252]
 gi|323956433|gb|EGB52175.1| ribonuclease D [Escherichia coli H263]
 gi|323978014|gb|EGB73100.1| ribonuclease D [Escherichia coli TW10509]
 gi|324007181|gb|EGB76400.1| ribonuclease D [Escherichia coli MS 57-2]
 gi|331056092|gb|EGI28101.1| ribonuclease D [Escherichia coli TA206]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|253773243|ref|YP_003036074.1| ribonuclease D [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|297516497|ref|ZP_06934883.1| ribonuclease D [Escherichia coli OP50]
 gi|300927881|ref|ZP_07143442.1| ribonuclease D [Escherichia coli MS 187-1]
 gi|312969840|ref|ZP_07784023.1| ribonuclease D [Escherichia coli 1827-70]
 gi|253324287|gb|ACT28889.1| ribonuclease D [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|300464070|gb|EFK27563.1| ribonuclease D [Escherichia coli MS 187-1]
 gi|310338125|gb|EFQ03214.1| ribonuclease D [Escherichia coli 1827-70]
 gi|323961858|gb|EGB57457.1| ribonuclease D [Escherichia coli H489]
 gi|323972689|gb|EGB67892.1| ribonuclease D [Escherichia coli TA007]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|88800079|ref|ZP_01115649.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
 gi|88777205|gb|EAR08410.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 43/168 (25%)

Query: 1   MATLFIDFETRSPID-----LTKCG-------------------ICKYAEDVCVILFAFG 36
           M  + +D ET          + + G                     +   D  V+    G
Sbjct: 1   MRQVVLDTETTGLNPTKGDRIVEVGCVEMVDRKLTGRHFHYYINPERDIPD-EVVAV-HG 58

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP------- 89
            D+  V+  D      +   L   LE     +V HN+ F+   L A F            
Sbjct: 59  IDNDKVK--DSPKFRDIAVELWTWLE--GAELVIHNAAFDMGFLNAEFERFAQEQREPFE 114

Query: 90  ----IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
               +   + TL +AR     S  +L A+ +   + +        L+ 
Sbjct: 115 KLETVCGVLDTLKVARDKHPGSKVSLDALCKRYGIDNSHRTLHGALLD 162


>gi|312867475|ref|ZP_07727684.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           parasanguinis F0405]
 gi|311097176|gb|EFQ55411.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           parasanguinis F0405]
          Length = 817

 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 41/303 (13%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         ++   R   T+ L++       
Sbjct: 74  QVAKEIFELIEDA--VFVAHNVKFDANLLAEALFWEGFELTTPRI-DTVELSQIFYPTLE 130

Query: 107 -SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY- 160
              L A+   L++        + +         K         R    +  +      Y 
Sbjct: 131 RYNLGALAAELQIELHHAHSALADAMATAQLLLKVREKIASLPRGLIENLLSMADCLIYE 190

Query: 161 -------CKGDVTVTR-----EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                     D ++       EI         +  E  +L +        + +      +
Sbjct: 191 SRLLIEDALEDSSLFLPSHLVEIHGLYLRKQQQFLESRHLSEQFELNMQLLGMEAYPEQS 250

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS--N 266
           +        +++ L       + +   + K   +L        + +  +   ++L     
Sbjct: 251 EF----AAYIEESLHQPLPSFIEAPTGIGKTYAYLLTLLAKTSKRILVSVPTKILQDQIM 306

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKL--NTLVE--AMNSDGRLRGTLQ-----FLGASRTG 317
           KK      ++F     + +S    +  +   E    +SD R+    +     +L  + TG
Sbjct: 307 KKEGKTIQELFQIPFHSLKSPKDYIQLDKFYETLQTDSDNRMIRRFKMQLLVWLTMTETG 366

Query: 318 RWS 320
            +S
Sbjct: 367 EFS 369


>gi|258422513|ref|ZP_05685421.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9635]
 gi|257847270|gb|EEV71276.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus aureus
           A9635]
          Length = 897

 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 85/280 (30%), Gaps = 33/280 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV---LARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     + I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPN---------HREAWRLFGEY 160
           +                K +I  F K E       +             +   + +  +Y
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQY 202

Query: 161 CKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALAHTLNQIVDVERTK 217
               +  + E F           ++     +    +     VD        Q + +  T 
Sbjct: 203 DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVDQLGLTYRPQQLYLAETI 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKLTPQA 273
           LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K  P  
Sbjct: 263 LDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAM 322

Query: 274 IQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            +  N ++     +S    ++  L+  +  D      +  
Sbjct: 323 NEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNI 362


>gi|238897890|ref|YP_002923569.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465647|gb|ACQ67421.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 241

 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     L K G      +  +I      +                     D 
Sbjct: 3   RQIVLDTETTG---LNKTGPHYEGHN--IIEIG-AVEVINRRLTGKTFHTYVRPNRQVDP 56

Query: 41  PVELWDCVHDPVMPQV------LKEALEN-TDVTIVAHNSYFERTVLKA---CFNLDIPI 90
                  + D  +           +  E      ++ HN+ F+   +         +IP 
Sbjct: 57  EAYQIHGISDEFLSDKPRFSEIFSQFFEFIRGSELIIHNAAFDIGFMDYEFSALQQNIPK 116

Query: 91  HRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                    TL LAR        +L A+ +  ++ + K      L+ 
Sbjct: 117 TNTFCTVTDTLALARRLFPGKRNSLDALCDRYQIDNSKRTLHGALLD 163


>gi|308234516|ref|ZP_07665253.1| ribonuclease D [Atopobium vaginae DSM 15829]
 gi|328944110|ref|ZP_08241575.1| ribonuclease D [Atopobium vaginae DSM 15829]
 gi|327492079|gb|EGF23853.1| ribonuclease D [Atopobium vaginae DSM 15829]
          Length = 376

 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 31/299 (10%), Positives = 77/299 (25%), Gaps = 40/299 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L ID E      + +           + L         V +            L +  
Sbjct: 20  DVLAIDTE-----FMREKTFY-----PKLCLIQLATRSEIVLVDPLSIPD--LTDLCKLF 67

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            +  +T + H    +  ++               T V A   G                +
Sbjct: 68  LDKKITKIFHACSQDLELI--YDIFSCLPKPVFDTQVAAAFLG---------------HR 110

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                  L+   C     +     +      A     EY   DV     ++  L     +
Sbjct: 111 FQIGYGPLVDALCHVHLPKAESLTDWTRRPLA-EEQLEYAADDVRYLPRMYDTLLHELKE 169

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           ++   +  + +++                   E     + + SLT   ++ +R +   + 
Sbjct: 170 KERYAWFLEEMHEVCN-------EHHVIKKPQEAYLHMRRISSLTRKQLAIAREIGIWRD 222

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
            +     +  + +       ++    K  P+ ++           ++    TL++A+  
Sbjct: 223 VIASHKDIPRKWVIPD---EIVIDLCKSVPKTMERLERIRSVDTLSIDDKQTLLQAIEK 278


>gi|182678372|ref|YP_001832518.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634255|gb|ACB95029.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 388

 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 42/149 (28%), Gaps = 18/149 (12%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
                 D + + +    L E + N     V H +  +  ++       +       T V 
Sbjct: 48  EEAVAVDALAEGLDLSPLFELMANEATVKVFHAARQDLEIIWNLA--KLIPTPLFDTQVA 105

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           A   G                 ++  G +L+    +    +     +      +     +
Sbjct: 106 AMVCGFG--------------DQISYG-DLVQTVTRVSLDKSSRFTDWSRRPLSPAQV-D 149

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           Y   DVT  R+I+  L         L +L
Sbjct: 150 YAIADVTYLRDIYLYLRRKLETSSRLAWL 178


>gi|167995093|ref|ZP_02576183.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232195|ref|ZP_02657253.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168239998|ref|ZP_02664930.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261338|ref|ZP_02683311.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465317|ref|ZP_02699199.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819164|ref|ZP_02831164.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445947|ref|YP_002039498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449519|ref|YP_002044248.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194471875|ref|ZP_03077859.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197248793|ref|YP_002145264.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263319|ref|ZP_03163393.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198244203|ref|YP_002214220.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389565|ref|ZP_03216176.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|213419655|ref|ZP_03352721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213428417|ref|ZP_03361167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646369|ref|ZP_03376422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852644|ref|ZP_03382176.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289828784|ref|ZP_06546543.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|194404610|gb|ACF64832.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407823|gb|ACF68042.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458239|gb|EDX47078.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195631798|gb|EDX50318.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197212496|gb|ACH49893.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241574|gb|EDY24194.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197938719|gb|ACH76052.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602010|gb|EDZ00556.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205327163|gb|EDZ13927.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333347|gb|EDZ20111.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339912|gb|EDZ26676.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344083|gb|EDZ30847.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349720|gb|EDZ36351.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|312911229|dbj|BAJ35203.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084513|emb|CBY94305.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224918|gb|EFX49979.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128579|gb|ADX16009.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326621964|gb|EGE28309.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326626623|gb|EGE32966.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 246

 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFNL---DI 88
                  + D  +    K    +             +V HN+ F+   +   F L   DI
Sbjct: 64  EAFGVHGIADEFLLD--KPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDI 121

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|187929152|ref|YP_001899639.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J]
 gi|187726042|gb|ACD27207.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12J]
          Length = 242

 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 53/183 (28%), Gaps = 30/183 (16%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-EDVCVILFAFGFDDHP 41
           M  + +D ET                       LT   +  Y   +  +   A       
Sbjct: 1   MRQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPEREIDAGAMAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-----IHRWI 94
            E   D      +   +++ ++  +  I  HN+ F+   L      L +P     +   I
Sbjct: 61  NEFVADKPKFAEIVNEIRDYVQGAEAII--HNAAFDLGFLDMEFQRLGLPAFREHLSGHI 118

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL  AR        +L A+ + L +S+        L+      E +  +         +
Sbjct: 119 DTLREARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVID 178

Query: 153 AWR 155
              
Sbjct: 179 MLE 181


>gi|15831767|ref|NP_310540.1| ribonuclease D [Escherichia coli O157:H7 str. Sakai]
 gi|157156075|ref|YP_001463104.1| ribonuclease D [Escherichia coli E24377A]
 gi|187776027|ref|ZP_02799888.2| ribonuclease D [Escherichia coli O157:H7 str. EC4196]
 gi|188024852|ref|ZP_02774388.2| ribonuclease D [Escherichia coli O157:H7 str. EC4113]
 gi|189010430|ref|ZP_02807242.2| ribonuclease D [Escherichia coli O157:H7 str. EC4076]
 gi|189402540|ref|ZP_02783120.2| ribonuclease D [Escherichia coli O157:H7 str. EC4401]
 gi|189403490|ref|ZP_02795783.2| ribonuclease D [Escherichia coli O157:H7 str. EC4486]
 gi|189404421|ref|ZP_02789258.2| ribonuclease D [Escherichia coli O157:H7 str. EC4501]
 gi|189405084|ref|ZP_02813223.2| ribonuclease D [Escherichia coli O157:H7 str. EC869]
 gi|189406051|ref|ZP_02826040.2| ribonuclease D [Escherichia coli O157:H7 str. EC508]
 gi|191168835|ref|ZP_03030609.1| ribonuclease D [Escherichia coli B7A]
 gi|193066361|ref|ZP_03047410.1| ribonuclease D [Escherichia coli E22]
 gi|193071290|ref|ZP_03052209.1| ribonuclease D [Escherichia coli E110019]
 gi|194430003|ref|ZP_03062510.1| ribonuclease D [Escherichia coli B171]
 gi|208810493|ref|ZP_03252369.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206]
 gi|208816683|ref|ZP_03257803.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045]
 gi|208818758|ref|ZP_03259078.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042]
 gi|209396542|ref|YP_002270881.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115]
 gi|209919169|ref|YP_002293253.1| ribonuclease D [Escherichia coli SE11]
 gi|217328853|ref|ZP_03444934.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588]
 gi|218554376|ref|YP_002387289.1| ribonuclease D [Escherichia coli IAI1]
 gi|218695366|ref|YP_002403033.1| ribonuclease D [Escherichia coli 55989]
 gi|218705302|ref|YP_002412821.1| ribonuclease D [Escherichia coli UMN026]
 gi|254793426|ref|YP_003078263.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359]
 gi|260844148|ref|YP_003221926.1| ribonuclease D [Escherichia coli O103:H2 str. 12009]
 gi|291282984|ref|YP_003499802.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615]
 gi|293446176|ref|ZP_06662598.1| ribonuclease D [Escherichia coli B088]
 gi|332279045|ref|ZP_08391458.1| ribonuclease D [Shigella sp. D9]
 gi|13361980|dbj|BAB35936.1| RNase D, processes tRNA precursor [Escherichia coli O157:H7 str.
           Sakai]
 gi|157078105|gb|ABV17813.1| ribonuclease D [Escherichia coli E24377A]
 gi|187769404|gb|EDU33248.1| ribonuclease D [Escherichia coli O157:H7 str. EC4196]
 gi|188016291|gb|EDU54413.1| ribonuclease D [Escherichia coli O157:H7 str. EC4113]
 gi|189000217|gb|EDU69203.1| ribonuclease D [Escherichia coli O157:H7 str. EC4076]
 gi|189355025|gb|EDU73444.1| ribonuclease D [Escherichia coli O157:H7 str. EC4401]
 gi|189360343|gb|EDU78762.1| ribonuclease D [Escherichia coli O157:H7 str. EC4486]
 gi|189365729|gb|EDU84145.1| ribonuclease D [Escherichia coli O157:H7 str. EC4501]
 gi|189371954|gb|EDU90370.1| ribonuclease D [Escherichia coli O157:H7 str. EC869]
 gi|189376734|gb|EDU95150.1| ribonuclease D [Escherichia coli O157:H7 str. EC508]
 gi|190901115|gb|EDV60890.1| ribonuclease D [Escherichia coli B7A]
 gi|192926009|gb|EDV80654.1| ribonuclease D [Escherichia coli E22]
 gi|192955385|gb|EDV85869.1| ribonuclease D [Escherichia coli E110019]
 gi|194411930|gb|EDX28245.1| ribonuclease D [Escherichia coli B171]
 gi|208725009|gb|EDZ74716.1| ribonuclease D [Escherichia coli O157:H7 str. EC4206]
 gi|208731026|gb|EDZ79715.1| ribonuclease D [Escherichia coli O157:H7 str. EC4045]
 gi|208738881|gb|EDZ86563.1| ribonuclease D [Escherichia coli O157:H7 str. EC4042]
 gi|209157942|gb|ACI35375.1| ribonuclease D [Escherichia coli O157:H7 str. EC4115]
 gi|209768038|gb|ACI82331.1| RNase D [Escherichia coli]
 gi|209768040|gb|ACI82332.1| RNase D [Escherichia coli]
 gi|209768042|gb|ACI82333.1| RNase D [Escherichia coli]
 gi|209768044|gb|ACI82334.1| RNase D [Escherichia coli]
 gi|209768046|gb|ACI82335.1| RNase D [Escherichia coli]
 gi|209912428|dbj|BAG77502.1| ribonuclease D [Escherichia coli SE11]
 gi|217318200|gb|EEC26627.1| ribonuclease D [Escherichia coli O157:H7 str. TW14588]
 gi|218352098|emb|CAU97835.1| ribonuclease D [Escherichia coli 55989]
 gi|218361144|emb|CAQ98727.1| ribonuclease D [Escherichia coli IAI1]
 gi|218432399|emb|CAR13290.1| ribonuclease D [Escherichia coli UMN026]
 gi|254592826|gb|ACT72187.1| ribonuclease D [Escherichia coli O157:H7 str. TW14359]
 gi|257759295|dbj|BAI30792.1| ribonuclease D [Escherichia coli O103:H2 str. 12009]
 gi|290762857|gb|ADD56818.1| Ribonuclease D [Escherichia coli O55:H7 str. CB9615]
 gi|291323006|gb|EFE62434.1| ribonuclease D [Escherichia coli B088]
 gi|332101397|gb|EGJ04743.1| ribonuclease D [Shigella sp. D9]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|323175119|gb|EFZ60733.1| ribonuclease D [Escherichia coli LT-68]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|320194484|gb|EFW69115.1| Ribonuclease D [Escherichia coli WV_060327]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|269960729|ref|ZP_06175101.1| ribonuclease D [Vibrio harveyi 1DA3]
 gi|269834806|gb|EEZ88893.1| ribonuclease D [Vibrio harveyi 1DA3]
          Length = 372

 Score = 44.3 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 59/230 (25%), Gaps = 31/230 (13%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 47  FDGKQLSLIDPTELTDMTS-FVELLKDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G                  +  G   +     G   +    R     R   + 
Sbjct: 104 QLMAAFLG----------------HGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQK 147

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI-----------NDRGYCVDVALAH 205
             +Y   DV     ++++L    ++      + Q             N+    +D+  A 
Sbjct: 148 QLDYAAADVHYLMPLYEKLLDKVNEAGWWEAVQQESDLLVSKRIRNLNEETVYLDIKGAW 207

Query: 206 TLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLF-LETGLHLEDL 254
            L          L             +   + K    L     GL     
Sbjct: 208 QLRPAELAILKPLATWRYREAIKRDLALNFIFKEGDLLTVARLGLTNFKK 257


>gi|262212307|gb|ACY35770.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +     Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCPIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
 gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
          Length = 318

 Score = 44.3 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 69/258 (26%), Gaps = 39/258 (15%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIA-----RFCKGETHECLYDRNKPNHRE 152
                +     L+ +   L +         + I      + C     E     NK     
Sbjct: 130 KKYMKHATNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEEGKRKVNKAM--- 186

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                  Y    V       KR            YLD         V V         + 
Sbjct: 187 -LDETAVYEA--VKEILACNKRNVEWLRCMNVGSYLDIKAFYPVMRVKVKGRKKYV--LT 241

Query: 213 VERTKLDQELESLTYGLV 230
               +  +E+ +      
Sbjct: 242 EILEEDVKEICTSLKCEP 259


>gi|224023901|ref|ZP_03642267.1| hypothetical protein BACCOPRO_00618 [Bacteroides coprophilus DSM
           18228]
 gi|224017123|gb|EEF75135.1| hypothetical protein BACCOPRO_00618 [Bacteroides coprophilus DSM
           18228]
          Length = 163

 Score = 44.3 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 26/142 (18%)

Query: 1   MATLF-IDFETRSPIDLTKCGICKYA-EDVCVILFAFG-FDDHPVEL------------W 45
           M     IDFET +    + C +      +  ++   +   +  P                
Sbjct: 1   MKDFAAIDFETANNQRSSVCSVGIVVVRNDEIVDTFYSLINPEPNYYSYWCSQVHGLTRE 60

Query: 46  DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           D  + PV P V K+   L +  + +VAHN  F+ + LK     + +D P + +  TL ++
Sbjct: 61  DTENAPVFPDVWKQIEPLID-GLPLVAHNRPFDESCLKAVFRVYQMDYPDYEFYDTLCVS 119

Query: 101 R----SNGLPSALKAVGEALKL 118
           R           L  V  A   
Sbjct: 120 RKVFPYL-PNHQLHTVAAACGY 140


>gi|16129758|ref|NP_416318.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655]
 gi|89108643|ref|AP_002423.1| ribonuclease D [Escherichia coli str. K-12 substr. W3110]
 gi|170081460|ref|YP_001730780.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B]
 gi|238901018|ref|YP_002926814.1| ribonuclease D [Escherichia coli BW2952]
 gi|301019362|ref|ZP_07183546.1| ribonuclease D [Escherichia coli MS 196-1]
 gi|133152|sp|P09155|RND_ECOLI RecName: Full=Ribonuclease D; Short=RNase D
 gi|75765643|pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An
           Exoribonuclease Involved In Structured Rna Processing
 gi|581215|emb|CAA30098.1| unnamed protein product [Escherichia coli]
 gi|1736427|dbj|BAA15599.1| ribonuclease D [Escherichia coli str. K12 substr. W3110]
 gi|1788105|gb|AAC74874.1| ribonuclease D [Escherichia coli str. K-12 substr. MG1655]
 gi|169889295|gb|ACB03002.1| ribonuclease D [Escherichia coli str. K-12 substr. DH10B]
 gi|238863466|gb|ACR65464.1| ribonuclease D [Escherichia coli BW2952]
 gi|299882254|gb|EFI90465.1| ribonuclease D [Escherichia coli MS 196-1]
 gi|309702026|emb|CBJ01340.1| ribonuclease D [Escherichia coli ETEC H10407]
 gi|315136445|dbj|BAJ43604.1| ribonuclease D [Escherichia coli DH1]
 gi|226093|prf||1410308A ribonuclease D
          Length = 375

 Score = 44.3 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|71019835|ref|XP_760148.1| hypothetical protein UM04001.1 [Ustilago maydis 521]
 gi|46099778|gb|EAK85011.1| hypothetical protein UM04001.1 [Ustilago maydis 521]
          Length = 2098

 Score = 44.3 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 51/383 (13%), Positives = 100/383 (26%), Gaps = 71/383 (18%)

Query: 301  DGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQII 360
            D  +R      GA +  +          LP+         + I +   + ++       +
Sbjct: 1058 DTTMRYPSGASGARQDKQGEADRKKGLILPQVVSMGTVTRRAIENTWLTASNAKKNR--V 1115

Query: 361  SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               +++ V A  G  LV AD+   E   +  + G+        T          ++    
Sbjct: 1116 GSELKAMVKAPPGYSLVGADVDSEEL-WICSVMGDAQFGIHGATAVGWMTLEGTKALGTD 1174

Query: 421  PAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
                T       R   KV   +  Y  G K    +      +++      K        +
Sbjct: 1175 LHSKTASILGTSRNQAKVFNYSRIYGAGIKHATHLLLKANPSVSNEEATQKAKELYMATK 1234

Query: 477  DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
                               + ++    E +       + +   L             +  
Sbjct: 1235 GQNTHTDEFFGAKFWFGGTESYVFNKLESIA---LSDNPKTPAL-------------DCG 1278

Query: 537  AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
               A  ++ +  V              +GR                          Y   
Sbjct: 1279 VTNALTKKFLGKVDFG-----------NGRL----------------------SEEYMPS 1305

Query: 597  LTENIVQAVSRD---ILAEGMMNATKA---GYDIVLTVHDEIVCETPDTDEFNAS---ML 647
                +VQ+   D   +L   M   +K        +L+VHDE+     D D + A+    +
Sbjct: 1306 RINWVVQSSGVDYLHLLITAMEWLSKRYSIDARFMLSVHDEVRYLVKDQDTYRAALALQI 1365

Query: 648  YHLMTSNPSWA-----KGLPLKA 665
             ++ T    +A       LPL  
Sbjct: 1366 ANIWTRAM-FAFKLQMDDLPLGC 1387


>gi|315604318|ref|ZP_07879384.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314024|gb|EFU62075.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 414

 Score = 44.3 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 30/180 (16%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+ +    +Y  D  ++      +D    L D  H       L   +++     + H+  
Sbjct: 54  DVERAQGFRYGSDPYLV--QIRREDVGTFLID-THALPDLSALAPGVDD---VWLLHDCL 107

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLSSQKMEEGKELIAR 132
            +   L+    + +       T + AR  GL    L AV E  L L   K  +  +   R
Sbjct: 108 QDLPNLRQ---VGLVPSSLFDTEIAARLVGLERFGLAAVAEQVLGLGLVKDHQASDWSLR 164

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
               E                   +  Y   DV +  E++ RL     +     +  Q  
Sbjct: 165 PLPPE-------------------WLRYAALDVELLTELYYRLSKRLDQMGRWEWAQQEF 205


>gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL S4-171]
          Length = 1444

 Score = 44.3 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 48/186 (25%), Gaps = 39/186 (20%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 427 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 485

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   +    +VAHN+ F+   +   +    +    +  + TL L
Sbjct: 486 MVKGSDPIDVVLKRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 543

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     +   H   
Sbjct: 544 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHDSL 603

Query: 154 WRLFGE 159
               GE
Sbjct: 604 NDYMGE 609


>gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
 gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
          Length = 1490

 Score = 44.3 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 54/193 (27%), Gaps = 29/193 (15%)

Query: 4   LFIDFETRSPID-------------LTKCGICKYAE--DVCVILFAFGFDDHPVELWDCV 48
           +  D ET                  L    + K++E  D  +   +           D V
Sbjct: 460 VVFDIETTGLSPTEDKIIEIGAVKMLDGVVVDKFSEFVDPKI-PISPATTKLTTITDDMV 518

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
               +   +         D  +V HN  F+ + +        +       I T+ L+R+ 
Sbjct: 519 IGAPLIDAVVPKFVEFCGDCVLVGHNVGFDISFIIENCRRLGIK-KEFTCIDTMGLSRAF 577

Query: 104 GL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGE 159
                  +L+AV + LK+     E+    I+          ++                 
Sbjct: 578 YPQQAKHSLEAVCKTLKV---VNEQHHRAISDAECTAEIFKIFQEKLYEKGIYDLDAIKA 634

Query: 160 YCKGDVTVTREIF 172
             + D+   + + 
Sbjct: 635 IEELDIEAVKRLH 647


>gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           seeligeri FSL N1-067]
          Length = 1452

 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 48/186 (25%), Gaps = 39/186 (20%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 435 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 493

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   +    +VAHN+ F+   +   +    +    +  + TL L
Sbjct: 494 MVKGSDPIDVVLKRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 551

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     +   H   
Sbjct: 552 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHDSL 611

Query: 154 WRLFGE 159
               GE
Sbjct: 612 NDYMGE 617


>gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
           extructa W1219]
 gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
           extructa W1219]
          Length = 1442

 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLPSA 108
            +   L   + +    +VAHN+ F+   L       +     +  I TL +AR+     +
Sbjct: 460 EVVDELLAYIGDA--VLVAHNASFDFPFLNEELRRLSRKPLTNPVIDTLDMARAILSDRS 517

Query: 109 ---LKAVGEALKLS 119
              L+ V    KL+
Sbjct: 518 RFALEYVSNHYKLN 531


>gi|164686248|ref|ZP_02210278.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM
           16795]
 gi|164601850|gb|EDQ95315.1| hypothetical protein CLOBAR_02686 [Clostridium bartlettii DSM
           16795]
          Length = 174

 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 31/144 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCV---ILFAFGFDDHPVELWD--------CVHD 50
             + +D ET      + C I +      V   I   +     P  +            +D
Sbjct: 8   KYIVVDLETTGLDPFSGCEIIEIGITEIVNNKIGRNYSRLVKPKGIIPSHITNITSITND 67

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVL 99
                     +    ++ + +T +  +AHN+ F+   L        L+  I+  ICTL +
Sbjct: 68  MVEDAESLETVLPNFRKYVGDTTI--IAHNAKFDLKFLNYYLDLLGLE-KINNHICTLEM 124

Query: 100 -----ARSNGLPSALKAVGEALKL 118
                +   G    L+       +
Sbjct: 125 LKRCKSYK-GKNKKLETACNYYNI 147


>gi|308535281|ref|YP_002138830.2| 3'-to-5' exonuclease [Geobacter bemidjiensis Bem]
 gi|308052626|gb|ACH39034.2| 3'-to-5' exonuclease, putative [Geobacter bemidjiensis Bem]
          Length = 312

 Score = 44.3 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 51/171 (29%), Gaps = 61/171 (35%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVIL--FAFGFDDHPVELWDCVHDP--------VM 53
           L +D ET             Y  D  + L   AF +D    E++               +
Sbjct: 55  LCLDTETTGLD---------YKRDKVIELGIVAFEYDPETGEIFRISERYSGFEDPGFPI 105

Query: 54  PQVLKEA--------------------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRW 93
           P+ +KE                     L      ++AHN+ F+R  ++A F     +  W
Sbjct: 106 PEEVKEITGISDDMVRGQAFDDAFINLLAEKSHMVIAHNAAFDRKFVEARFPAFTKL-PW 164

Query: 94  ICT------------------LV---LARSNGLPSALKAVGEALKLSSQKM 123
            CT                  L+    + +     AL      L L  +++
Sbjct: 165 ACTVSQIDWGAERVSSRTLEYLLFKTASLTINAHRALDDAEGVLGLLLERL 215


>gi|212703983|ref|ZP_03312111.1| hypothetical protein DESPIG_02036 [Desulfovibrio piger ATCC 29098]
 gi|212672576|gb|EEB33059.1| hypothetical protein DESPIG_02036 [Desulfovibrio piger ATCC 29098]
          Length = 333

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 29/174 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L  D ETR      + G      D   +  A  +D    + +       +P++      
Sbjct: 158 YLVFDVETRRSA--AEVG-GWNRADRMGVSIAVAYDSRADDFF-TYTQEALPELFARM-- 211

Query: 63  NTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEALKL 118
                +V  NS  F+  VL A    D+     +   +L R         +L  +G+A  L
Sbjct: 212 RAAQLVVGFNSFRFDYAVLSAFAPFDLRALPGLD--LLRRVQDSLKYRVSLDNLGQA-TL 268

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              K  +G + +  + +G                       YC+ DV +TR ++
Sbjct: 269 DEPKSADGLQALRWWQEGR----------------LDDIAAYCRKDVDLTRRLY 306


>gi|223937173|ref|ZP_03629080.1| conserved hypothetical protein [bacterium Ellin514]
 gi|223894195|gb|EEF60649.1| conserved hypothetical protein [bacterium Ellin514]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 28/187 (14%)

Query: 1   MATL-FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKE 59
           M  + + D ET+   +    G  K +     I   +       +++           L  
Sbjct: 1   MKNIVYFDLETQKSAE-EVGGWDKISAMRMSIGVTYSTARGDYKIY----GEKQVDDLLT 55

Query: 60  ALENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLAR--SNGLPSALKAVGEAL 116
            L+  D  +V  N   F+  VL    ++D+     +  +++    +     +L ++  A 
Sbjct: 56  ELQRAD-LVVGFNHLRFDYEVLHGYTSMDLRQLPTLD-MLVELQNTLQHRLSLDSIATA- 112

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
               +K  EG + I  F +G                      EYC  DV +T+ +++   
Sbjct: 113 TFGLEKTAEGLQAIEWFRQG----------------KLMEIAEYCCFDVKLTKMVYEHGV 156

Query: 177 PLSSKEQ 183
                  
Sbjct: 157 NYKELHY 163


>gi|168238647|ref|ZP_02663705.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194736138|ref|YP_002113281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204927010|ref|ZP_03218212.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194711640|gb|ACF90861.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288607|gb|EDY27984.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204323675|gb|EDZ08870.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322614544|gb|EFY11473.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620062|gb|EFY16934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623357|gb|EFY20196.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629345|gb|EFY26124.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632065|gb|EFY28819.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637197|gb|EFY33899.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640310|gb|EFY36970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645923|gb|EFY42443.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652378|gb|EFY48732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652582|gb|EFY48932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660392|gb|EFY56628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664545|gb|EFY60738.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669402|gb|EFY65552.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670948|gb|EFY67081.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678813|gb|EFY74868.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681842|gb|EFY77867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687968|gb|EFY83934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194322|gb|EFZ79517.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197738|gb|EFZ82870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203466|gb|EFZ88491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206789|gb|EFZ91742.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213392|gb|EFZ98193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214685|gb|EFZ99436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221462|gb|EGA05878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226220|gb|EGA10436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229992|gb|EGA14112.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233731|gb|EGA17820.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238575|gb|EGA22633.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244263|gb|EGA28272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246424|gb|EGA30407.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252193|gb|EGA36046.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258046|gb|EGA41725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323265129|gb|EGA48628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272692|gb|EGA56099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 246

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFNL---DI 88
                  + D  +    K    +             +V HN+ F+   +   F L   DI
Sbjct: 64  EAFGVHGIADEFLLD--KPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDI 121

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|82776970|ref|YP_403319.1| ribonuclease D [Shigella dysenteriae Sd197]
 gi|81241118|gb|ABB61828.1| RNase D [Shigella dysenteriae Sd197]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|320181157|gb|EFW56076.1| Ribonuclease D [Shigella boydii ATCC 9905]
 gi|332089922|gb|EGI95022.1| ribonuclease D [Shigella boydii 5216-82]
 gi|332093315|gb|EGI98374.1| ribonuclease D [Shigella dysenteriae 155-74]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  SILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|313892527|ref|ZP_07826115.1| exonuclease [Dialister microaerophilus UPII 345-E]
 gi|313119055|gb|EFR42259.1| exonuclease [Dialister microaerophilus UPII 345-E]
          Length = 195

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 23/141 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVC---------VILFAFGFDDHPVEL-----WD 46
           M    IDFET        C +     D           +      FD+  + +      D
Sbjct: 1   MKYTAIDFETAFWGKGNACSLGIVISDGSKLTDEWYDLIRPVHLNFDEECIRVNGIHPED 60

Query: 47  CVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKACFN-LDIPIHR--WICTLVLAR 101
               P  P    +   L N  V   AHN+ F+  VL    +  ++P     W  T+ ++R
Sbjct: 61  VKDKPEFPYYWDKISGLLNGTVAF-AHNAPFDFGVLANTIDRYELPDINFCWGDTVEISR 119

Query: 102 SN---GLPSALKAVGEALKLS 119
                     L  V E L   
Sbjct: 120 ILWKKLPNHKLNTVAEFLNFE 140


>gi|311085987|gb|ADP66069.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 30/149 (20%)

Query: 2   ATLFIDFET-----RSPIDLTKCGICKYAEDVCVILF-----------AFGFDDHPVELW 45
            T+ +D ET      S   +    I   A ++    F               +   +++ 
Sbjct: 5   RTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQPGRSIESGALKVH 64

Query: 46  DCVHDPVMPQVLKEALEN------TDVTIVAHNSYFERTVLKACFNL---DIPIH---RW 93
              +  ++ + + + + +       +  +V HN+ F+   +     +    I I+     
Sbjct: 65  GITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFCSI 124

Query: 94  ICTLVLARSNGLPSA--LKAVGEALKLSS 120
           + TL +AR         L A+    K++ 
Sbjct: 125 VDTLKMARKLFPGKKNTLDALCTRYKINK 153


>gi|262342167|gb|ACY54594.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDTSGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|157161268|ref|YP_001458586.1| ribonuclease D [Escherichia coli HS]
 gi|188495947|ref|ZP_03003217.1| ribonuclease D [Escherichia coli 53638]
 gi|194439630|ref|ZP_03071702.1| ribonuclease D [Escherichia coli 101-1]
 gi|254161863|ref|YP_003044971.1| ribonuclease D [Escherichia coli B str. REL606]
 gi|157066948|gb|ABV06203.1| ribonuclease D [Escherichia coli HS]
 gi|188491146|gb|EDU66249.1| ribonuclease D [Escherichia coli 53638]
 gi|194421451|gb|EDX37466.1| ribonuclease D [Escherichia coli 101-1]
 gi|242377525|emb|CAQ32279.1| RNase D [Escherichia coli BL21(DE3)]
 gi|253973764|gb|ACT39435.1| ribonuclease D [Escherichia coli B str. REL606]
 gi|253977958|gb|ACT43628.1| ribonuclease D [Escherichia coli BL21(DE3)]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|148242440|ref|YP_001227597.1| DNA polymerase III epsilon subunit [Synechococcus sp. RCC307]
 gi|147850750|emb|CAK28244.1| DNA polymerase III epsilon subunit [Synechococcus sp. RCC307]
          Length = 264

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 32/142 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAF---GFDDHPVELWDCVHDPVMPQ----- 55
           L +D ET          + +  E   ++ F+            L     +   P      
Sbjct: 41  LILDTETTGLDP----EVDQVLEVGAIL-FSVPQRAVLAQLSFLLPVEANAAEPLNGIRA 95

Query: 56  -------------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--V-- 98
                         L +   +     VAHN+ F+R         D+P+  W+CT+  +  
Sbjct: 96  GATQAPQPWQPSLQLLQQFASCAQLAVAHNAAFDRQWFGHGALPDLPL-PWLCTMEDIHW 154

Query: 99  -LARSNGLPSALKAVGEALKLS 119
              R      +++ +  A  + 
Sbjct: 155 PADRLLRPRPSVRDLALAYGVP 176


>gi|62178830|ref|YP_215247.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224582105|ref|YP_002635903.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62126463|gb|AAX64166.1| DNA polymerase III, epsilon subunit, 3-5 exonucleolytic
           proofreading function [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224466632|gb|ACN44462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713281|gb|EFZ04852.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 246

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFNL---DI 88
                  + D  +    K    +             +V HN+ F+   +   F L   DI
Sbjct: 64  EAFGVHGIADEFLLD--KPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDI 121

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|26248062|ref|NP_754102.1| ribonuclease D [Escherichia coli CFT073]
 gi|91211019|ref|YP_541005.1| ribonuclease D [Escherichia coli UTI89]
 gi|215487015|ref|YP_002329446.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69]
 gi|218558666|ref|YP_002391579.1| ribonuclease D [Escherichia coli S88]
 gi|218689740|ref|YP_002397952.1| ribonuclease D [Escherichia coli ED1a]
 gi|26108465|gb|AAN80667.1|AE016761_242 Ribonuclease D [Escherichia coli CFT073]
 gi|91072593|gb|ABE07474.1| ribonuclease D [Escherichia coli UTI89]
 gi|215265087|emb|CAS09475.1| ribonuclease D [Escherichia coli O127:H6 str. E2348/69]
 gi|218365435|emb|CAR03162.1| ribonuclease D [Escherichia coli S88]
 gi|218427304|emb|CAR08103.1| ribonuclease D [Escherichia coli ED1a]
 gi|294489955|gb|ADE88711.1| ribonuclease D [Escherichia coli IHE3034]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|319898851|ref|YP_004158944.1| Ribonuclease D [Bartonella clarridgeiae 73]
 gi|319402815|emb|CBI76366.1| Ribonuclease D [Bartonella clarridgeiae 73]
          Length = 385

 Score = 44.3 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 19/165 (11%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L      D    L D +   +  Q   + + +  V  V H +  +   +       
Sbjct: 37  PQLCLIQVASPDITT-LIDPMAQDINLQPFFDLMIDKKVVKVFHAARQDIETI-YHLGGV 94

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           IP      T V     G   ++       + +   +++        C+  +         
Sbjct: 95  IP-SPLFDTQVAGSICGFGDSISYDQIVQRCTGHHLDKSSRFTDWSCRPLS--------- 144

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                       Y   DVT  R+++  L+    K++   +++  +
Sbjct: 145 -------EKQLLYALADVTYLRDVYLTLKKQLEKKKRTHWMNDEM 182


>gi|170731148|ref|YP_001776581.1| ribonuclease D [Xylella fastidiosa M12]
 gi|167965941|gb|ACA12951.1| ribonuclease D [Xylella fastidiosa M12]
          Length = 362

 Score = 44.3 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 47/175 (26%), Gaps = 26/175 (14%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L     +D  + +   V    M   L   L   +V  + H++  +    K      
Sbjct: 36  PELALVQIAIEDEILLVDPLVPG--MTDALGLWLAAPNVIKIMHSASEDLIAFKYACG-- 91

Query: 88  IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +       T + A   GL   +   K V +   +   K E   + + R            
Sbjct: 92  VLPRPLFDTQIGAALTGLGGGMGYQKLVAKVTNVELGKGETRSDWMHRPLTPAQ------ 145

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                         +Y   DV     +   L    ++     +L++        +
Sbjct: 146 -------------LDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCTRLTDNI 187


>gi|170739343|ref|YP_001767998.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46]
 gi|168193617|gb|ACA15564.1| DNA polymerase III, epsilon subunit [Methylobacterium sp. 4-46]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 39/151 (25%), Gaps = 38/151 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFDD 39
             + +D ET      T     +  E   + L                       A     
Sbjct: 3   REIVLDTETTG----TDAKTDRLVEIGGIELLNHIPTGREFHRYINPQRPVSQGALAVHG 58

Query: 40  -HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLD------IPIH 91
                L D      +     +   +   T V HN+ F+   L      L       I + 
Sbjct: 59  LADAFLADKPPFAAILPAFLDFCGDA--TFVIHNAAFDVGFLNAEYARLGDAAPPAIDLA 116

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSS 120
             + TL LAR     +   L A+     + +
Sbjct: 117 GVVDTLALARRKHPNAANNLDALCARYGIDN 147


>gi|327356611|gb|EGE85468.1| 3'-5' exonuclease [Ajellomyces dermatitidis ATCC 18188]
          Length = 270

 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 56/211 (26%), Gaps = 35/211 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--------Q 55
           L+ID E    I+L + G         ++   F      V L D  H             +
Sbjct: 30  LYIDLE---GINLCREGSIS------ILQI-FNHPKEHVYLVDIHHLGEAAFTTTGTNGK 79

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK-- 110
            LK  LE      V  +   +   L   F + +         ++   NG    P + K  
Sbjct: 80  SLKSILECPVTPKVFFDVRNDSNALFFHFGIRLQ--GIEDIQLME--NGSRPGPLSRKKF 135

Query: 111 --AVGEALKLSSQKMEEGKELIARFCKGETHE-----CLYDRNKPNHREAWRLFGEYCKG 163
              +   +++ +      K L        T                     +   +YC  
Sbjct: 136 VSGLARCIEMDTPVSPAAKRLWKENKDKGTQLFAPERGGSHEVFNVRPIP-QAIIDYCVQ 194

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
           DV+    +        +   +   +  T   
Sbjct: 195 DVSFMPLLRTLYWSKLTPHWKSEVVGATKER 225


>gi|261196313|ref|XP_002624560.1| 3'-5' exonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239587693|gb|EEQ70336.1| 3'-5' exonuclease [Ajellomyces dermatitidis SLH14081]
 gi|239614653|gb|EEQ91640.1| 3'-5' exonuclease [Ajellomyces dermatitidis ER-3]
          Length = 305

 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 56/211 (26%), Gaps = 35/211 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--------Q 55
           L+ID E    I+L + G         ++   F      V L D  H             +
Sbjct: 30  LYIDLE---GINLCREGSIS------ILQI-FNHPKEHVYLVDIHHLGEAAFTTTGTNGK 79

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL---PSALK-- 110
            LK  LE      V  +   +   L   F + +         ++   NG    P + K  
Sbjct: 80  SLKSILECPVTPKVFFDVRNDSNALFFHFGIRLQ--GIEDIQLME--NGSRPGPLSRKKF 135

Query: 111 --AVGEALKLSSQKMEEGKELIARFCKGETHE-----CLYDRNKPNHREAWRLFGEYCKG 163
              +   +++ +      K L        T                     +   +YC  
Sbjct: 136 VSGLARCIEMDTPVSPAAKRLWKENKDKGTQLFAPERGGSHEVFNVRPIP-QAIIDYCVQ 194

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTIND 194
           DV+    +        +   +   +  T   
Sbjct: 195 DVSFMPLLRTLYWSKLTPHWKSEVVGATKER 225


>gi|300938850|ref|ZP_07153558.1| ribonuclease D [Escherichia coli MS 21-1]
 gi|300456240|gb|EFK19733.1| ribonuclease D [Escherichia coli MS 21-1]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|182683721|ref|YP_001835468.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14]
 gi|182629055|gb|ACB90003.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14]
          Length = 816

 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTEASLEPRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|168486184|ref|ZP_02710692.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570792|gb|EDT91320.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1087-00]
          Length = 816

 Score = 44.3 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 82/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREI-FKRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T    +    P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQYILSSPDLVQVQGLYFKKTAASLEPRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|238913716|ref|ZP_04657553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 246

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFNL---DI 88
                  + D  +    K    +             +V HN+ F+   +   F L   DI
Sbjct: 64  EAFGVHGIADEFLLD--KPVFADVIDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDI 121

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|229472555|gb|ACQ72792.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 40/143 (27%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R   + S G+ +V ADLAGIE R+L       +  +        D++     +    
Sbjct: 10  PRFRELFLPSPGQVMVGADLAGIEFRMLTHFLARYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  +  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIRGAYIDAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRK 143


>gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579]
 gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 69/258 (26%), Gaps = 39/258 (15%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIA-----RFCKGETHECLYDRNKPNHRE 152
                +     L+ +   L +         + I      + C     E     NK     
Sbjct: 127 KKYMKHATNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEEGKRKVNKAM--- 183

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                  Y    V       KR            YLD         V V         + 
Sbjct: 184 -LDETAVYEA--VKEILACNKRNVEWLRCMNVGSYLDIKAFYPVMRVKVKGRKKYV--LT 238

Query: 213 VERTKLDQELESLTYGLV 230
               +  +E+ +      
Sbjct: 239 EILEEDVKEICTSLKCEP 256


>gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129]
 gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129]
          Length = 1443

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 17/136 (12%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHN-SYFERTVLKACF---NLDIPIHRWICT 96
             +L D +      + L+  L      +VAHN   F+   L+  F   N+    +  I T
Sbjct: 464 QAQLEDGMEQQAGLEKLRAWL--DGCVMVAHNGLSFDLPFLQTQFEKYNIAPLTNPLIDT 521

Query: 97  LVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           L L+ +         L  +   LK              R  + +       +     +E 
Sbjct: 522 LALSWALNPGFASHTLSNICAKLKFDFD--------DERLHRADYDTQALKKVFDYFKEQ 573

Query: 154 WRLFGEYCKGDVTVTR 169
             L G      +    
Sbjct: 574 VELMGITNLEQLDQEL 589


>gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
 gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           ivanovii FSL F6-596]
          Length = 1452

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 48/186 (25%), Gaps = 39/186 (20%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 435 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 493

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ Q  KE   +    +VAHN+ F+   +   +    +    +  + TL L
Sbjct: 494 MVKGSDPIDVVLQRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLEL 551

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     +   H   
Sbjct: 552 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDYHDSL 611

Query: 154 WRLFGE 159
               GE
Sbjct: 612 NDYMGE 617


>gi|262212259|gb|ACY35746.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSDNHLQVGSDTSGLELRCLGHYL-------SRYDGGKFAEEGVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1454

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 48/165 (29%), Gaps = 18/165 (10%)

Query: 6   IDFETR----SPIDLTKCGICKYAEDVCVILFAFGFDDHP-----------VELWDCVHD 50
            D ET     S   + + G  K      +  F+   +              +   D    
Sbjct: 439 FDLETTGLSSSSNKIIEIGAVKIRNGKIIDTFSSFVNPETDIPEHITELTGITTTDIADA 498

Query: 51  PVMPQVLKEALE-NTDVTIVAHNSYFERT-VLKACFNLDIPIHR-WICTLVLARSNGLPS 107
           P +  VL + +E      +VAHN+ F+   +L    +L I  ++ +I T+ +AR      
Sbjct: 499 PTIAAVLPQFVEFCASAILVAHNADFDMGFILHNTRDLAIEFNKTYIDTVSMARILLPNL 558

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
               +          ++     +            +         
Sbjct: 559 GNAKLSNIANKLKVSLKNHHRAVDDASATAEIFLKFIEMLAQREI 603


>gi|21356549|ref|NP_650075.1| CG6744 [Drosophila melanogaster]
 gi|10726453|gb|AAF54639.2| CG6744 [Drosophila melanogaster]
 gi|19528113|gb|AAL90171.1| AT25352p [Drosophila melanogaster]
          Length = 583

 Score = 44.3 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 60/215 (27%), Gaps = 45/215 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D E      +T  G  +      V L           L+   H   +PQ L+E L
Sbjct: 78  KVLGFDCE-----WITVGGSRRP-----VALLQLSSHRGLCALFRLCHMKQIPQDLRELL 127

Query: 62  ENTDVTIVA---HNSYFERTVLKACFNLDIPIH---RWICTLVLARSNGLPSALKAVGE- 114
           E+  V  V         +   L   + + +      R++C +   +    P  L  + + 
Sbjct: 128 EDDSVIKVGVAPQE---DAMKLSHDYGVGVASTLDLRFLCVMAGHK----PEGLGKLSKT 180

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L  +  K           C     + L  +              Y   D  +   I+++
Sbjct: 181 HLNYTLDKHW------RLACSNWEAKTLEPKQLD-----------YAANDALMAVAIYQK 223

Query: 175 LEPLSS--KEQELWYLD--QTINDRGYCVDVALAH 205
           L          +   LD     N     +DV    
Sbjct: 224 LCRDLQPKHFWQRRQLDDNSMHNKFEPFLDVDFTK 258


>gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1402

 Score = 44.3 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 25/139 (17%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVI-LFAFGFDDH---PVEL-----WDCVHD 50
           + +D ET         + + G  K  E+  +   F+   D     PV +           
Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVK-IENGQITDRFSTFVDPEGKIPVRISELTGIYQDMV 449

Query: 51  PVMPQVLKEALE----NTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
              P+++   LE     +   +VAHN+ F+   LK  +    + I  + +I TL L+R  
Sbjct: 450 DKAPKLIDAILEFERFASSSVLVAHNAQFDIGFLKKAYQECGI-IFDYTYIDTLELSRRL 508

Query: 104 ---GLPSALKAVGEALKLS 119
                   L  V E L + 
Sbjct: 509 LTDLSSYKLNKVAEFLNVE 527


>gi|227893216|ref|ZP_04011021.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227864985|gb|EEJ72406.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------LFAFGFDDHPVELW---DC 47
           M  + +DFET +    + C +      +  ++            F   +  V      D 
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNNEIVDRFYTVINPQMLFDARNIQVHQITAEDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHN+ F+  V++     +N++ P +  I TL  ++ 
Sbjct: 61  KNAPTMAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNIEEPHYLVIDTLATSKL 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V   L + 
Sbjct: 121 FEPELPNHKLDTVSSTLDVE 140


>gi|182412681|ref|YP_001817747.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
 gi|177839895|gb|ACB74147.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
          Length = 391

 Score = 44.3 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 35/193 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E     ++             V L  F      + L D +      + L   L
Sbjct: 45  DEVALDTE---ADNMFHYRT-------RVCLLQFLV-GREIFLVDVLAPLPF-EGLWARL 92

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
              ++  + H S F+  +L               T++ A+    P   L ++ E      
Sbjct: 93  AEKNL--IMHGSDFDLRLL--HDFCRFRPKSIFDTMLAAQLINRPRIGLASLLE------ 142

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                G +L     K         R         +   +Y   DV     +   L    +
Sbjct: 143 --DHFGVKL----SKESQKANWSKRPLT------KKMLDYAALDVFHLPALRDILTRELT 190

Query: 181 KEQELWYLDQTIN 193
           K   + +L Q   
Sbjct: 191 KLGRIEWLRQQCR 203


>gi|304386198|ref|ZP_07368531.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304327555|gb|EFL94782.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 181

 Score = 44.3 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 29/143 (20%)

Query: 4   LFIDFETR-----SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW-----------DC 47
           + IDFET      S   +    +        +       +      W           D 
Sbjct: 7   VAIDFETAAPARASACSIALTVVQNDQITDELYSL---INPETKFHWRNVQVHGIHEADV 63

Query: 48  VHDPVMPQVLKEALE---NTDVTIVAHNSYFERTVLKACF-NLDIP--IHRWICTLVLAR 101
              P  P+ L   L+     D  +VAHN+ F+ +VLK      ++    ++ + TL  +R
Sbjct: 64  QDAPTFPE-LWPILQPFFTPDQLVVAHNANFDNSVLKKTLERYELNRLPYQTLDTLRTSR 122

Query: 102 S---NGLPSALKAVGEALKLSSQ 121
           S   N     L  + + L +  +
Sbjct: 123 SFFPNYPNHKLNTLCDNLGIELE 145


>gi|292670219|ref|ZP_06603645.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648171|gb|EFF66143.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 179

 Score = 44.3 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 22/197 (11%), Positives = 46/197 (23%), Gaps = 39/197 (19%)

Query: 2   ATLFIDFETR---SPIDLTKCGICKYAEDVCVILFAF-----GFDD-------HPVELWD 46
             L  D ET    S  ++    +   A    V           + D        P  + +
Sbjct: 4   KILVFDTETTGFRSDDEVLTLAVVDGAGATVVDGMYAPVRKNAWPDAEKINRISPAMVVN 63

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
           C         L+    + +  +V +N  F+  +L     + I        ++        
Sbjct: 64  CPPILAQQAELERMFNDPETLLVGYNIEFDIRLLAQ-SGIRIQNPNRHDVMLA----FSE 118

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
                          K+ E  +                                   D  
Sbjct: 119 FRKVPDARRGGYRWWKLAECADYYRYDWGTTKAHG-------------------ALADTL 159

Query: 167 VTREIFKRLEPLSSKEQ 183
            T   +++++    +EQ
Sbjct: 160 ATLFCYQKMKEPVYEEQ 176


>gi|284164995|ref|YP_003403274.1| hypothetical protein Htur_1716 [Haloterrigena turkmenica DSM 5511]
 gi|284014650|gb|ADB60601.1| conserved hypothetical protein [Haloterrigena turkmenica DSM 5511]
          Length = 250

 Score = 44.3 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 26/180 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           T F+D ET         G+    EDV  +           E +      +    L+  LE
Sbjct: 84  TCFLDIETT--------GLDASCEDVTTVSV---HRGGETETF-VKDRDLTACRLETELE 131

Query: 63  NTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            + +  V  N   F+   L+ C+++D+        +   +  GL   LKA+   L +   
Sbjct: 132 ESSLL-VTFNGQRFDVPFLETCYDIDVTTPHV-DLMYPCKQLGLDGGLKAIERDLGIDRD 189

Query: 122 -KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                G++ +  + + E               A     EY + D      + + +     
Sbjct: 190 MPDLSGRDAVRLWHEYERG----------DDGALETLVEYNRADTRNMEPLMEIVADRLH 239


>gi|281178870|dbj|BAI55200.1| ribonuclease D [Escherichia coli SE15]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|171686350|ref|XP_001908116.1| hypothetical protein [Podospora anserina S mat+]
 gi|161087386|gb|ABX56854.1| mitochondrial DNA polymerase gamma catalytic subunit [Podospora
           anserina]
 gi|170943136|emb|CAP68789.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1155

 Score = 44.3 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 53/194 (27%), Gaps = 11/194 (5%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ V A  G   V AD+   E
Sbjct: 667 PQVIPMGTVTRRAVENTWLTASNAKKN------RVGSELKAMVRAPPGYVFVGADVDSEE 720

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   ++        T       R   KV      Y
Sbjct: 721 L-WIASVVGDATFKLHGGNAIGFMTLEGTKAQGTDLHSRTAAILGITRNDAKVFNYGRIY 779

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K   ++      +L+    L          +  +   + + +        + F+  
Sbjct: 780 GAGLKFAGQLLRQFNPSLSEQETLDIAGKLYATTKGTKTNRKSLYKRPFWRGGTESFVFN 839

Query: 502 ACERVKKAWRQKHS 515
             E   +    +  
Sbjct: 840 KLEEFAEQSHPRTP 853


>gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2]
 gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 1442

 Score = 44.3 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 47/171 (27%), Gaps = 44/171 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------------- 43
           ET    D+   G+     +  + L A    D  +                          
Sbjct: 425 ETYVVFDVETTGLSA-VYNTIIELAAVKVKDGEIIDRFMSFANPHHPLSVTTMELTGITD 483

Query: 44  --LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV 98
             + D      + +   + + ++ +   AHN+ F+   L A      L   I+  I TL 
Sbjct: 484 EMVKDAPDVEEVLRRFIDWVGDSTLA--AHNASFDIGFLNAGLAKMGLGKVINPVIDTLE 541

Query: 99  LARSNGL---PSALKAVGE--------ALKLSSQKMEEGKELIARFCKGET 138
           LAR          L  + +          +        G  L+    + E 
Sbjct: 542 LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLLKEAEE 592


>gi|110641921|ref|YP_669651.1| ribonuclease D [Escherichia coli 536]
 gi|300981914|ref|ZP_07175784.1| ribonuclease D [Escherichia coli MS 200-1]
 gi|110343513|gb|ABG69750.1| ribonuclease D [Escherichia coli 536]
 gi|300307392|gb|EFJ61912.1| ribonuclease D [Escherichia coli MS 200-1]
 gi|324011590|gb|EGB80809.1| ribonuclease D [Escherichia coli MS 60-1]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|323454533|gb|EGB10403.1| hypothetical protein AURANDRAFT_62671 [Aureococcus anophagefferens]
          Length = 3786

 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 42/163 (25%), Gaps = 25/163 (15%)

Query: 30   VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDI 88
            + +   G  D  V LW       +P  L   L N  +  +  N   + T L K    +++
Sbjct: 2941 IRVIQIGVKDV-VYLWRV--KDSVPAGLAAILRNEGIEKIGVNFQGDITRLTKQYEGVEV 2997

Query: 89   PIHRWICTLVLARSNGLPSALKAVGEALKLSSQK-----MEEGKELIARFCKGETHECLY 143
                                L  +     L SQK      +   EL+ R    E      
Sbjct: 2998 KGEIIE--------------LSDLAND-TLKSQKRRWSLADLVMELLNRTLDKELGGGGR 3042

Query: 144  DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
                       +   +Y   D   T  +   L     +     
Sbjct: 3043 YGRWDEWPLD-QDAQQYAANDAAATFMVHAALLDPKLRGWVWV 3084


>gi|225856476|ref|YP_002737987.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae P1031]
 gi|225724714|gb|ACO20566.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae P1031]
          Length = 816

 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKMAASLEPRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1434

 Score = 44.0 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 47/171 (27%), Gaps = 44/171 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------------- 43
           ET    D+   G+     +  + L A    D  +                          
Sbjct: 417 ETYVVFDVETTGLSA-VYNTIIELAAVKVKDGEIIDRFMSFANPHHPLSVTTMELTGITD 475

Query: 44  --LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV 98
             + D      + +   + + ++ +   AHN+ F+   L A      L   I+  I TL 
Sbjct: 476 EMVKDAPDVEEVLRRFIDWVGDSTLA--AHNASFDIGFLNAGLAKMGLGKVINPVIDTLE 533

Query: 99  LARSNGL---PSALKAVGE--------ALKLSSQKMEEGKELIARFCKGET 138
           LAR          L  + +          +        G  L+    + E 
Sbjct: 534 LARFLYPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLLKEAEE 584


>gi|308177615|ref|YP_003917021.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
           Re117]
 gi|307745078|emb|CBT76050.1| putative DNA polymerase III subunit epsilon [Arthrobacter
           arilaitensis Re117]
          Length = 412

 Score = 44.0 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWI---CTL 97
           + D      + + L   L  +   +VAHN  F+   L+       L +P        CT+
Sbjct: 65  VLDAPSFKDLAEELHWRL--SGTVLVAHNLSFDSRFLEAEFRKCGLPVPETFLAQGMCTM 122

Query: 98  VLA--RSNGLPSALKAVGEALKLSSQ 121
            ++     G   +L+   ++  +  Q
Sbjct: 123 RMSHRYLQGAGRSLQDCCDSFGIDLQ 148


>gi|289768333|ref|ZP_06527711.1| ribonuclease [Streptomyces lividans TK24]
 gi|289698532|gb|EFD65961.1| ribonuclease [Streptomyces lividans TK24]
          Length = 428

 Score = 44.0 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 27/180 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D  +    +Y +   ++            +            L  A+ + +   V H +
Sbjct: 68  VDAERASGYRYGQRAYLVQLRRA-GAGSALIDPVACPD--LSGLGAAIADAE--WVLHAA 122

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIAR 132
             +   L+    + +   R   T +  R  G P   L A+ E   +    +E+G   +  
Sbjct: 123 TQDLPCLRE---IGMVPTRIFDTELAGRLAGFPRVGLGAMVE--NVLGFVLEKGHSAVDW 177

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
             +                E W     Y   DV +  ++   LE    ++ +L +  Q  
Sbjct: 178 STRPL-------------PEPW---LRYAALDVELLVDLRDALEKELDRQGKLEWARQEF 221


>gi|256784454|ref|ZP_05522885.1| ribonuclease [Streptomyces lividans TK24]
          Length = 384

 Score = 44.0 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 27/180 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D  +    +Y +   ++            +            L  A+ + +   V H +
Sbjct: 24  VDAERASGYRYGQRAYLVQLRRA-GAGSALIDPVACPD--LSGLGAAIADAE--WVLHAA 78

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIAR 132
             +   L+    + +   R   T +  R  G P   L A+ E   +    +E+G   +  
Sbjct: 79  TQDLPCLRE---IGMVPTRIFDTELAGRLAGFPRVGLGAMVE--NVLGFVLEKGHSAVDW 133

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
             +                E W     Y   DV +  ++   LE    ++ +L +  Q  
Sbjct: 134 STRPL-------------PEPW---LRYAALDVELLVDLRDALEKELDRQGKLEWARQEF 177


>gi|262202194|ref|YP_003273402.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247]
 gi|262085541|gb|ACY21509.1| 3'-5' exonuclease [Gordonia bronchialis DSM 43247]
          Length = 447

 Score = 44.0 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 51/170 (30%), Gaps = 36/170 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + +D E        +    +Y++     L           L D + +P     + +AL  
Sbjct: 71  VAVDTE--------RASGYRYSQRAY--LIQIRRRGAGTFLLDPIDEPDALAPVIDALRG 120

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKA-VGEALKLSSQ 121
            +   V H +  +   L+    L         T +  R  GL    L A V E L L  +
Sbjct: 121 PE--WVLHAADQDLPCLRE---LGFVCAELYDTELAGRLLGLAKVNLAAMVAEFLGLGLR 175

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           K                     D ++    + W     Y   DV V  E+
Sbjct: 176 K----------------GHGAADWSRRPLPDDW---LNYAALDVEVLVEL 206


>gi|194434924|ref|ZP_03067168.1| ribonuclease D [Shigella dysenteriae 1012]
 gi|194416812|gb|EDX32937.1| ribonuclease D [Shigella dysenteriae 1012]
          Length = 375

 Score = 44.0 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  SILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|21224360|ref|NP_630139.1| ribonuclease [Streptomyces coelicolor A3(2)]
 gi|3169042|emb|CAA19240.1| putative ribonuclease [Streptomyces coelicolor A3(2)]
          Length = 394

 Score = 44.0 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 27/180 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D  +    +Y +   ++            +            L  A+ + +   V H +
Sbjct: 34  VDAERASGYRYGQRAYLVQLRRA-GAGSALIDPVACPD--LSGLGAAIADAE--WVLHAA 88

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIAR 132
             +   L+    + +   R   T +  R  G P   L A+ E   +    +E+G   +  
Sbjct: 89  TQDLPCLRE---IGMVPTRIFDTELAGRLAGFPRVGLGAMVE--NVLGFVLEKGHSAVDW 143

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
             +                E W     Y   DV +  ++   LE    ++ +L +  Q  
Sbjct: 144 STRPL-------------PEPW---LRYAALDVELLVDLRDALEKELDRQGKLEWARQEF 187


>gi|71275157|ref|ZP_00651444.1| Ribonuclease D [Xylella fastidiosa Dixon]
 gi|71163966|gb|EAO13681.1| Ribonuclease D [Xylella fastidiosa Dixon]
          Length = 362

 Score = 44.0 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 47/175 (26%), Gaps = 26/175 (14%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             + L     +D  + +   V    M   L   L   +V  + H++  +    K      
Sbjct: 36  PELALVQIAIEDEILLVDPLVPG--MTDALGLWLAAPNVIKIMHSASEDLIAFKYACG-- 91

Query: 88  IPIHRWICTLVLARSNGLPSAL---KAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           +       T + A   GL   +   K V +   +   K E   + + R            
Sbjct: 92  VLPRPLFDTQIGAALTGLGGGMGYQKLVAKVTNVELGKGETRSDWMHRPLTPAQ------ 145

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                         +Y   DV     +   L    ++     +L++        +
Sbjct: 146 -------------LDYAANDVRYLFVLHDTLTERLAEMSRSAWLEEDCTRLTDNI 187


>gi|330907546|ref|XP_003295846.1| hypothetical protein PTT_03429 [Pyrenophora teres f. teres 0-1]
 gi|311332479|gb|EFQ96060.1| hypothetical protein PTT_03429 [Pyrenophora teres f. teres 0-1]
          Length = 1157

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 53/473 (11%), Positives = 115/473 (24%), Gaps = 49/473 (10%)

Query: 167 VTREIFKRLEPLSSKEQELW-------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  ++     P+   ++  W        +    +     +D++    L    D E     
Sbjct: 517 ILLKLAWDGHPMVWSDKHGWTYKVPMDEVFAYNDKGMKQLDMSEEENLKLRDDTENVYF- 575

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            ++      L   +  L K     F +  L          +  L  N           + 
Sbjct: 576 -KIPHKDGPLARCANPLAKGYLQYFEKGKL---GSEYAYAKEALEMNAS----CSYWISA 627

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
           R R     V+    + +  +   +         A+R  +    +     +P  + +   +
Sbjct: 628 RDRIMSQMVVYDKDVPKK-SKVPKAPKLTSASTATRGKKVGFILPQI--IPMGTITRRSV 684

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKL 399
           +        +  +       +   ++S V A +G   V AD+   E   +A + G+    
Sbjct: 685 ENTWLTASNAKKN------RVGSELKSMVRAPKGYCFVGADVDSQEL-WIASLIGDATFQ 737

Query: 400 KAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTT 455
                          ++        T       R   KV      Y  G K    +    
Sbjct: 738 LHGGNAVGFMTLEGTKAAGTDLHSRTAAILGISRNDAKVFNYGRIYGAGLKFASTLLRQF 797

Query: 456 GLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
             +L             +  +  +   + + E        + F+    E   +  R +  
Sbjct: 798 NPSLTEAQTTKTAEDLYKNTKGVKTIRKQLHERPFWRGGTESFVFNKLEDFAEQERPRTP 857

Query: 516 RVSE---------------LWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLIL 560
            +                           Q+       +     D        D    I 
Sbjct: 858 VLGAAITEALQRRYLSKGGFMTSRINWAIQSSGVDYLHLLIVSMDYLTRRFNLDCRLSIT 917

Query: 561 MLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQA----VSRDI 609
           +    R LV  +     +         TR           + Q+     + DI
Sbjct: 918 VHDEIRYLVKEEDKYKAAMALQIANVWTRAMFSQQMGINQLPQSCAYFSAVDI 970


>gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           pneumoniae FH]
          Length = 1443

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 17/136 (12%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHN-SYFERTVLKACF---NLDIPIHRWICT 96
             +L D +      + L+  L      +VAHN   F+   L+  F   N+    +  I T
Sbjct: 464 QAQLEDGMEQQAGLEKLRAWL--DGCVMVAHNGLSFDLPFLQTQFEKYNIAPLTNPLIDT 521

Query: 97  LVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           L L+ +         L  +   LK              R  + +       +     +E 
Sbjct: 522 LALSWALNPGFASHTLSNICAKLKFDFD--------DERLHRADYDTQALKKVFDYFKEQ 573

Query: 154 WRLFGEYCKGDVTVTR 169
             L G      +    
Sbjct: 574 VELMGITNLEQLDQEL 589


>gi|225629458|ref|ZP_03787491.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
 gi|225615954|gb|EEH13003.1| DNA polymerase III subunit epsilon [Brucella ceti str. Cudo]
          Length = 379

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 180

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+   ++      W C
Sbjct: 181 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWAC 231


>gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
 gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
           SK46]
          Length = 529

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 43/138 (31%), Gaps = 24/138 (17%)

Query: 4   LFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDC-----VHDP 51
           + +D ET         + + G  K      +  F+   D     P  +            
Sbjct: 24  VVVDLETTGLKAKNDHIIEIGAIKTRGGKTIGTFSSFIDPGMEIPDHITSLTGITTADVE 83

Query: 52  VMPQ---VLKEALE-NTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA-RSN 103
             PQ   V+ + LE       VAHN+ F+   L+       LD P    + TL LA R  
Sbjct: 84  TAPQLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWPSPSVVDTLTLARRVL 143

Query: 104 GLPS----ALKAVGEALK 117
                    L  +   + 
Sbjct: 144 DRSQVGSFKLSQLARYVG 161


>gi|152978783|ref|YP_001344412.1| ribonuclease D [Actinobacillus succinogenes 130Z]
 gi|150840506|gb|ABR74477.1| ribonuclease D [Actinobacillus succinogenes 130Z]
          Length = 383

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 104/366 (28%), Gaps = 54/366 (14%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYF-ERTVLKACFNLDIPIHRWIC 95
           +D   V L D              L + +V  V H + + +  V    F         + 
Sbjct: 55  YDGERVSLIDPTTITDF-SPFTALLADINVIKVLH-ACYEDLEVFSHYFQQL--PEPIMD 110

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           T V+A     P +           + ++++G        +  +                 
Sbjct: 111 TQVMAGFLAFPHSTGLASLIRHYLALEIDKGASRTDWLARPLS----------------E 154

Query: 156 LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI-----------NDRGYCVDVALA 204
              +Y   DV     +++++    +K +    ++                    ++V  A
Sbjct: 155 KQLQYAAADVWYLLPLYEKMAVELAKTRWQSAVEFDCGLLLEKQRCVKEAESAYLNVPNA 214

Query: 205 HTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
             L+ +  +    L +  +        +   +               +   + T +  L+
Sbjct: 215 WRLSPVELMRLKLLAKWRQEEAVKRDLALNFVVH-----NESLWTVAKHAPKNTSE--LA 267

Query: 265 SNKKLTPQA----IQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
                  +       +     +A+R        ++  ++ D R + TL      +T R  
Sbjct: 268 DLGLHPHEIRIHGKTMLKLVAQATREPEQTYPAVIRRLSEDPRYKSTL------KTLRQK 321

Query: 321 GCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLV-VA 379
                P +L     + +   + +        ++P+ L  +    R+      G +LV V 
Sbjct: 322 LKAISPPDLAPEIIAGKRDLEKLMKWVWLQDNNPNKLPDLLRNWRAEF----GTELVKVL 377

Query: 380 DLAGIE 385
           D    E
Sbjct: 378 DQQQNE 383


>gi|294786964|ref|ZP_06752218.1| HRDC:3-5 exonuclease [Parascardovia denticolens F0305]
 gi|315226603|ref|ZP_07868391.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|294485797|gb|EFG33431.1| HRDC:3-5 exonuclease [Parascardovia denticolens F0305]
 gi|315120735|gb|EFT83867.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 432

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 56/192 (29%), Gaps = 32/192 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVA 70
           +D  +    +Y++     L  F  +   + L D        +  Q + EA  +     + 
Sbjct: 44  VDAERASGYRYSQQD--WLIQFKREGAGIALIDPVALSEQEMDWQDVNEAFGDA--VWIM 99

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKEL 129
           H+S  +       F+L +       T   AR  G     L AV E              L
Sbjct: 100 HDSSQDLP---GYFDLGLKPAGLFDTERAARLLGQVRFGLAAVTERY------------L 144

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
                K  +      R         R    Y   DV V  E+   ++    K  +    D
Sbjct: 145 DLTLAKEHSAADWSYRPLD------RDMRIYAALDVEVLIELEGLMKKDLKKAGKW---D 195

Query: 190 QTINDRGYCVDV 201
               D  Y ++ 
Sbjct: 196 WAQEDFIYLLNK 207


>gi|254670687|emb|CBA06809.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha153]
          Length = 244

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 64  EVLEGK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 P 148
            
Sbjct: 178 D 178


>gi|242281222|ref|YP_002993351.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242124116|gb|ACS81812.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 958

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 35/180 (19%)

Query: 6   IDFETR-SPIDLTKCGICKYAEDVCVILFAFGF--DDHPVELWDCVHD--PVMPQVLKEA 60
           +D ETR S  D+              +  +     D    + ++   D  P M + +++ 
Sbjct: 788 LDVETRRSAQDVGG------WHKAERMGISIAVLYDSTEDKYFEYEEDQIPEMMERVQKL 841

Query: 61  LENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLAR-SNGLPSALKAVGEALKL 118
                  I+  N   F+  VL      +      +  L+      G    L  + +A  L
Sbjct: 842 -----DLIIGFNIERFDYKVLSGIHPFNYKGLPTLDLLLKVYERLGYRLKLDNIAQA-TL 895

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
            + K  +G + +  + +G                   L  EYCK DV VTR+++   +  
Sbjct: 896 DAAKSADGLQALEWWKEGR----------------LDLITEYCKQDVAVTRDVYLFGKEN 939


>gi|160899427|ref|YP_001565009.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160365011|gb|ABX36624.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
          Length = 238

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV------LKACFNLDIPIHRWICTLVL 99
           D          + E L+     ++ HN+ F+         L     +   +   I TLV+
Sbjct: 67  DKPRFEHKVDEIWEYLQ--GAELIIHNAPFDLGFLNKELELANRPPIRQCVSGVIDTLVM 124

Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           A+        +L ++ + L++ +        L+ 
Sbjct: 125 AKEMFPGKRNSLDSLCDRLEVDNSGRTLHGALLD 158


>gi|37679238|ref|NP_933847.1| ribonuclease D [Vibrio vulnificus YJ016]
 gi|37197981|dbj|BAC93818.1| ribonuclease D [Vibrio vulnificus YJ016]
          Length = 390

 Score = 44.0 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 35/140 (25%), Gaps = 18/140 (12%)

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V  V H    +  V    F         + T ++A   G   +        + 
Sbjct: 87  ELLNDASVMKVLHACGEDLEVFHNAFG--AMPVPMVDTQIMAAFLGHGLSTGFAALVEQY 144

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
            + ++++ +       +  +                    EY   DV     +++ L   
Sbjct: 145 LNVELDKSESRTDWLARPLS----------------DKQLEYAAADVHYLLPLYEILLEK 188

Query: 179 SSKEQELWYLDQTINDRGYC 198
                      Q    +   
Sbjct: 189 VMAAGWWQAAQQESELQASK 208


>gi|321465391|gb|EFX76392.1| hypothetical protein DAPPUDRAFT_55156 [Daphnia pulex]
          Length = 181

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 6/104 (5%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       Y       L     D     + D +      Q L E   +  +  +   +
Sbjct: 64  VDLEHHSERSYR--GITCLMQISTDKTD-YIVDTLQLWDHLQPLNEVFCDPKIVKIFQGA 120

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGEAL 116
             +   L+  F + +       T   A   G    +L  + +  
Sbjct: 121 DSDVIWLQRDFGIYV--VNLFDTFQAATLLGFEKKSLSFLLQHY 162


>gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 891

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 37/428 (8%), Positives = 97/428 (22%), Gaps = 81/428 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E  S                   L           L D +       +L+   
Sbjct: 138 KVFAVDTEQHSLRSFLGFTA----------LIQIST-HEKDFLVDTIVLHDAMSILRPVF 186

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP-SALKAVGE-ALKLS 119
              ++  V H +  +   L+   +  I +     T         P  +L  + E    ++
Sbjct: 187 SEPNICKVFHGADNDVLWLQR--DFHIYVVNMFDTAKACEVLSKPQRSLAYLLETVCGVA 244

Query: 120 SQKMEEGKELIARFCKGETHECLYDRN---KPNHREAWRLFGEYCKGDV----------- 165
           + K+ + ++   R    E                        +    D            
Sbjct: 245 TNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTAELKQLATEDSSSPDDRFHFLL 304

Query: 166 -------TVTREIFKR-LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTK 217
                      +++ +  E           + + +N  G   +++L     + +  +   
Sbjct: 305 EASRRSNMTCLQLYTKETEDFPGSAAASSIIYRHLNGHGDKSNISLNA---EELVRKLCA 361

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKL-------- 269
               +  +           + +                 TT + +  +            
Sbjct: 362 WRDLMGRIHDESTRYVLSDQAIVGLAC---------KQPTTNEEIYDTIAHTDLATESSP 412

Query: 270 ---------TPQAIQVFNNRMRASRSAVLKLNTLVEAM-----NSDGRLRGT---LQFLG 312
                     P      ++        + KL+ ++  +      ++G    +      L 
Sbjct: 413 SLSSSVQSPYPVICSHLDDIYEMILDKLAKLDDILPVVLKKCLGTNGTCPISVFNYSLLV 472

Query: 313 ASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASE 372
             +T   S          +    + +                     +    R  + A++
Sbjct: 473 NFKTKLSSHSAP-----KQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCR--IYAND 525

Query: 373 GKKLVVAD 380
           G+ L   D
Sbjct: 526 GRLLCYCD 533


>gi|284031654|ref|YP_003381585.1| 3'-5' exonuclease [Kribbella flavida DSM 17836]
 gi|283810947|gb|ADB32786.1| 3'-5' exonuclease [Kribbella flavida DSM 17836]
          Length = 422

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 54/182 (29%), Gaps = 31/182 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           +D  +    +Y+    ++      +      +           VL +A+ + +   + H 
Sbjct: 56  VDAERASGYRYSHRAYLV--QLRREGAGSALVDPIPFGD--LSVLGDAIIDAE--WIIHA 109

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAV-GEALKLSSQKMEEGKELI 130
           +  +   L     + +   +   T +  R  G P   L ++  E L    +K     +  
Sbjct: 110 ANQDLACLAE---VGMVPRQVFDTELAGRLLGYPKVGLASLVSEVLGYRMRKEHSAADWS 166

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
            R   G                    +  Y   DV +  E+   +E    +E +  +  Q
Sbjct: 167 TRPLPGP-------------------WLVYAALDVEMLIELRDAIEQELRREGKWEWAQQ 207

Query: 191 TI 192
             
Sbjct: 208 EF 209


>gi|293410113|ref|ZP_06653689.1| ribonuclease D [Escherichia coli B354]
 gi|291470581|gb|EFF13065.1| ribonuclease D [Escherichia coli B354]
          Length = 371

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 54/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E     S   +   L Q    
Sbjct: 166 TEASGWLSAALDECRLMQMRRQ 187


>gi|262342265|gb|ACY54643.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 42/152 (27%), Gaps = 9/152 (5%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                +   E        G   + +  + R+ 
Sbjct: 123 LLEAIKKASERGFIKALDGR--KIIVDSPRKA 152


>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
 gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
          Length = 1434

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 44/150 (29%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------- 43
            +  D ET            +Y  D  + L A    D  +                    
Sbjct: 418 YVVFDVETTGLSS-------QY--DKIIELAAVKVKDGEIIDKFERFSNPGERLNETIKN 468

Query: 44  --------LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHR 92
                   L D      +    K+ + +     VAHN+ F+   +             + 
Sbjct: 469 LTGITDDMLIDAPPIESVLNDFKDFVGDA--IYVAHNASFDMGFIDTGFDRLGYGPTENG 526

Query: 93  WICTLVLARSNGLP---SALKAVGEALKLS 119
            I TL L+R+         L  + +   + 
Sbjct: 527 VIDTLELSRTINTEMGKHGLNFLAKKYGVE 556


>gi|192289550|ref|YP_001990155.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
           TIE-1]
 gi|192283299|gb|ACE99679.1| Exonuclease RNase T and DNA polymerase III [Rhodopseudomonas
           palustris TIE-1]
          Length = 276

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 24/105 (22%)

Query: 4   LFIDFETR----SPIDLTKCGICK--YAEDVCVILF--AFGFDDHPVELWD--------- 46
           + +D ET     S  ++ + G+ K  Y+ +  ++     F   + P              
Sbjct: 23  IMLDIETTGLDHSTDEIIELGMVKFDYSAEGRILGVRGTFSAFNEPSVPIPREITAITGI 82

Query: 47  -----CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
                  H   +      A  +  V ++AHNS F+R   +  + +
Sbjct: 83  TDGMVAGHGFDVHA--VAAFVDDAVIVIAHNSGFDRKFAERYWPV 125


>gi|156973677|ref|YP_001444584.1| ribonuclease D [Vibrio harveyi ATCC BAA-1116]
 gi|156525271|gb|ABU70357.1| hypothetical protein VIBHAR_01380 [Vibrio harveyi ATCC BAA-1116]
          Length = 382

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 19/155 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M     E L++T V  V H    +  V +  F         + T
Sbjct: 57  FDGKQLSLIDPTELTDMTS-FVELLKDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 113

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G                  +  G   +     G   +    R     R   + 
Sbjct: 114 QLMAAFLG----------------HGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQK 157

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
             +Y   DV     ++++L    ++      + Q 
Sbjct: 158 QLDYAAADVHYLMPLYEKLLDKVNEAGWWEAVQQE 192


>gi|88857337|ref|ZP_01131980.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           tunicata D2]
 gi|88820534|gb|EAR30346.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
           tunicata D2]
          Length = 375

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 92/320 (28%), Gaps = 46/320 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E      + +  +        + L    FD   + L D     +      + + 
Sbjct: 24  VLAIDTE-----FMRRRTLY-----PEIALIQV-FDGQHLGLID-PCCDLDLSRFWQIMS 71

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKLS 119
           +  +  V H+   +  V      +         T       G  + L     V   L L+
Sbjct: 72  DAAILKVLHSPSEDVEVFLKHGCI---PSPIFDTQFALSLLGGANCLGFAIMVERFLGLT 128

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHR--EAWRLFGEYCK--------GDVTVTR 169
             K E     + R       E             E  R   E           GD+ VT+
Sbjct: 129 IDKSESRTNWLQRPLSASQLEYAAGDVFYLLPCFEKIRAEIEALGFMNIVIGEGDLLVTK 188

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN--QIVDVERTKLDQELESLTY 227
             ++  + +        ++D   + +     +A+ + L   +        L         
Sbjct: 189 RAYQTPDEML-------HIDINNSWQLQPAQLAVLNQLAVWRRDKAREKNLALGFILKEP 241

Query: 228 GLVSSSRCLEKLKTWLFLETGLHLEDLTETT------CQRVLSSNKKLTPQ-AIQVFNN- 279
            L   +R   +    L    G+   ++ ++        +  L++  +  P    ++ +  
Sbjct: 242 TLFEIARRQPQSMNQLRTIAGIEPMEINKSGKQILQCVEAGLAAPVETHPLKVTRLIDYP 301

Query: 280 -RMRASRSAVLKLNTLVEAM 298
              ++++    K+  + E +
Sbjct: 302 DYKKSAKLIKQKITKVAEKV 321


>gi|85083710|ref|XP_957168.1| hypothetical protein NCU01745 [Neurospora crassa OR74A]
 gi|16416096|emb|CAD01137.1| conserved hypothetical protein [Neurospora crassa]
 gi|28918255|gb|EAA27932.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 800

 Score = 44.0 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 42/139 (30%), Gaps = 19/139 (13%)

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
           + +L+ L  +++       T  D     D    +   + V   + +  QEL         
Sbjct: 22  YDKLKSLLREDRPDDDEPWTEEDEVRFCDEIF-NVQLEKVAQFQEEKMQELR-------- 72

Query: 232 SSRCLEKLKTWLFLETGLHLE----DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSA 287
                 +     F +          +  + T + +    K+L  +   + N      + +
Sbjct: 73  ------QRVDAAFDKLKDLPPADSENKDKPTDEALAQRLKELEAELDAITNEVKELRKYS 126

Query: 288 VLKLNTLVEAMNSDGRLRG 306
            L     ++ +    R RG
Sbjct: 127 NLNYTGFLKIVKKHDRKRG 145


>gi|303255784|ref|ZP_07341825.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS455]
 gi|303260270|ref|ZP_07346241.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP-BS293]
 gi|303261476|ref|ZP_07347424.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP14-BS292]
 gi|303264144|ref|ZP_07350065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS397]
 gi|303266246|ref|ZP_07352137.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS457]
 gi|303268684|ref|ZP_07354474.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS458]
 gi|301801646|emb|CBW34344.1| putative exonuclease [Streptococcus pneumoniae INV200]
 gi|302597168|gb|EFL64273.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS455]
 gi|302637610|gb|EFL68097.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP14-BS292]
 gi|302638594|gb|EFL69058.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae SP-BS293]
 gi|302641744|gb|EFL72101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS458]
 gi|302644176|gb|EFL74432.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS457]
 gi|302646549|gb|EFL76775.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae BS397]
          Length = 816

 Score = 44.0 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTEASLEPRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|283832800|ref|ZP_06352541.1| ribonuclease D [Citrobacter youngae ATCC 29220]
 gi|291072487|gb|EFE10596.1| ribonuclease D [Citrobacter youngae ATCC 29220]
          Length = 371

 Score = 44.0 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 47/173 (27%), Gaps = 40/173 (23%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          L+
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGKHVALID-PQGITDWSPLR 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDTAITKFLHAGSEDLEVFLNAFG-ELP-QPLIDTQILAAFCGRPLSWGFAAMVEEF 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +   +++ +       +  T                    EY   DV     I
Sbjct: 122 TGVALDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPI 158


>gi|170680016|ref|YP_001743442.1| ribonuclease D [Escherichia coli SMS-3-5]
 gi|218699628|ref|YP_002407257.1| ribonuclease D [Escherichia coli IAI39]
 gi|170517734|gb|ACB15912.1| ribonuclease D [Escherichia coli SMS-3-5]
 gi|218369614|emb|CAR17383.1| ribonuclease D [Escherichia coli IAI39]
          Length = 375

 Score = 44.0 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGISDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|91228923|ref|ZP_01262822.1| ribonuclease D [Vibrio alginolyticus 12G01]
 gi|91187531|gb|EAS73864.1| ribonuclease D [Vibrio alginolyticus 12G01]
          Length = 277

 Score = 44.0 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 25/158 (15%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD + + L D      M       L++T V  V H    +  V +  F         + T
Sbjct: 60  FDGNRLSLIDPTELTDMT-PFVALLKDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 116

Query: 97  LVLARSNGLPSALKAVG---EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            ++A   G   +        E L +   K E   + +AR                     
Sbjct: 117 QLMAAFLGHGLSTGFASLVEEYLGVELDKSESRTDWMARPLT------------------ 158

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
            +   +Y   DV     ++++L    ++      + Q 
Sbjct: 159 -QKQLDYAAADVHYLLPLYEKLFDKVTQAGWWEAVQQE 195


>gi|258622057|ref|ZP_05717084.1| DNA polymerase I [Vibrio mimicus VM573]
 gi|258585671|gb|EEW10393.1| DNA polymerase I [Vibrio mimicus VM573]
          Length = 353

 Score = 44.0 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 593 YGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLY 648
               +    +QA   DI+     N  +A   ++LT HD         +E   S L 
Sbjct: 264 NNKSIRNWPLQATGADIMRRACFNLDEANIPLLLTNHDS--FLVRLDEENQDSQLE 317


>gi|168230367|ref|ZP_02655425.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194468856|ref|ZP_03074840.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194455220|gb|EDX44059.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205335099|gb|EDZ21863.1| DNA polymerase family B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 783

 Score = 44.0 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 64/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQEHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|117928598|ref|YP_873149.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
 gi|117649061|gb|ABK53163.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
          Length = 416

 Score = 44.0 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 33/185 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVA 70
           +D  +    +Y     ++            L D     +   + + L      +    + 
Sbjct: 46  VDAERASAYRYGHRAYLV--QLRRPGAGTFLIDPLPFANLRPVHEAL------STAEWIV 97

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKEL 129
           H +  +   L     L +   R   T + AR  G P   L A+ E L         G  L
Sbjct: 98  HAAAQDLPCLAE---LGLRPARLFDTELAARLAGYPRVGLAAMVEEL--------LGFRL 146

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
                         D ++    E+W     Y   DV V  E+ + L     ++ +L +  
Sbjct: 147 N-------KDHARVDWSRRPLPESW---LRYAALDVEVLVELREILHTELQRQGKLRWAV 196

Query: 190 QTIND 194
           +    
Sbjct: 197 EEFEH 201


>gi|331683306|ref|ZP_08383907.1| ribonuclease D [Escherichia coli H299]
 gi|331079521|gb|EGI50718.1| ribonuclease D [Escherichia coli H299]
          Length = 371

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|304361038|ref|YP_003857224.1| gp93 [Mycobacterium phage LeBron]
 gi|302858307|gb|ADL71056.1| gp93 [Mycobacterium phage LeBron]
          Length = 259

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 65/224 (29%), Gaps = 26/224 (11%)

Query: 2   ATLFIDFET----RSPIDL--TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ 55
             L +D ET        DL     GI +      V+ FA  +      ++    D     
Sbjct: 4   RVLVLDIETQRAIVEVFDLFRPWIGIDQVRVPKRVLCFAAKWRGEDKVIFKAAWDDNDED 63

Query: 56  VLKEA------LENTDVTIVAHNS-YFERTVL-KACFNLDIP---IHRWICTLVLARSNG 104
             +        L ++   +V  N   F+   L      L +P    ++ +          
Sbjct: 64  AYRRMMQAAWELLDSADIVVTWNGDRFDMQWLEAEFLRLGMPRPMPYKSVD-------LI 116

Query: 105 LPSAL--KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
             +    K    +LKL        K+        +    +    +   R A +   EY +
Sbjct: 117 KTAKRWFKGGLMSLKLDWSSRIILKDRKVNHGGNDLWWDIRHGTRAEKRAAQKTMREYNE 176

Query: 163 GDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
            DV +T  +F++  P  +    L+        R    +      
Sbjct: 177 HDVVLTARLFEKYLPYLNVNLALYGGHDDDVMRCVKCESENLKK 220


>gi|302554895|ref|ZP_07307237.1| ribonuclease D [Streptomyces viridochromogenes DSM 40736]
 gi|302472513|gb|EFL35606.1| ribonuclease D [Streptomyces viridochromogenes DSM 40736]
          Length = 474

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 29/181 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           +D  +    +Y +   ++      +      +            L EAL  + V  V H 
Sbjct: 68  VDAERASGYRYGQRAYLV--QLRREGAGTALIDPVACPD--LSALGEAL--SGVEWVLHA 121

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L+    + +   R   T +  R  G P   L A+ E   +    +E+G   + 
Sbjct: 122 ATQDLPCLRE---IGMVPTRLFDTELAGRLAGFPRVGLGAMVE--GVLGFVLEKGHSAVD 176

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              +                E W     Y   DV +  ++   LE    ++ +L +  Q 
Sbjct: 177 WSTRPL-------------PEPW---LRYAALDVELLVDLRDALEKELDRQGKLDWARQE 220

Query: 192 I 192
            
Sbjct: 221 F 221


>gi|256637237|dbj|BAI03206.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640289|dbj|BAI06251.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643346|dbj|BAI09301.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646401|dbj|BAI12349.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649454|dbj|BAI15395.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256655498|dbj|BAI21425.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 337

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLPS 107
               + +   +E +DV  VAHN  F+   ++  F    +DI     +CT+ +        
Sbjct: 199 EEKMEHILSFIEESDVI-VAHNVNFDMKFIRNSFANAKIDIGKIGTMCTMEMH-----GG 252

Query: 108 ALKAVGEALKL 118
           +L A  + L +
Sbjct: 253 SLSACSKRLGI 263


>gi|258543099|ref|YP_003188532.1| DNA polymerase III subunit epsilon [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634177|dbj|BAI00153.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256652440|dbj|BAI18374.1| DNA polymerase III exonuclease epsilon subunit like protein
           [Acetobacter pasteurianus IFO 3283-01-42C]
          Length = 343

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLPS 107
               + +   +E +DV  VAHN  F+   ++  F    +DI     +CT+ +        
Sbjct: 205 EEKMEHILSFIEESDVI-VAHNVNFDMKFIRNSFANAKIDIGKIGTMCTMEMH-----GG 258

Query: 108 ALKAVGEALKL 118
           +L A  + L +
Sbjct: 259 SLSACSKRLGI 269


>gi|229472203|gb|ACQ72616.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLPSSKAAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|299821667|ref|ZP_07053555.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
 gi|299817332|gb|EFI84568.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
          Length = 929

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 16/120 (13%)

Query: 8   FETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVT 67
            ET S     +  I  + +   +          P + +D      +  +++  LE+    
Sbjct: 40  LETYSTFINPEREIPPFIQ--QLTGI------KPSDCYDAPIFTDVAPIIQNLLED--CI 89

Query: 68  IVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQ 121
            VAHN  F+ T L          +P  + + T+ LAR          L+ + +  KL   
Sbjct: 90  FVAHNVSFDWTFLAREMQRAGYPLPKTKKLDTVELARIIYPGIDSYKLQDLSDEFKLGHD 149


>gi|56412368|ref|YP_149443.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361305|ref|YP_002140940.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56126625|gb|AAV76131.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197092780|emb|CAR58205.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 783

 Score = 44.0 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 65/237 (27%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E        + +L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTE-------IMSFLLERATINGLPVDR 365


>gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
 gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
          Length = 1448

 Score = 44.0 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 40/149 (26%), Gaps = 42/149 (28%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-----ELWDCVH-------- 49
            +  D ET            +Y  +  + L A    D        E  D  H        
Sbjct: 428 YVVFDTETTGL-------SAQY--NKVIELAAVKMKDGEKIGEFEEFIDPGHPLSQTTIN 478

Query: 50  ----------DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK----ACFNLDIPIHRW 93
                          + + +          IV HN+ F+   +          +I    W
Sbjct: 479 LTHITDAMVRGSKTEEEVFKLFREFCKGCIIVGHNATFDVDFMNTGYLRHGMPEIK-EPW 537

Query: 94  ICTLVLARSNGLPSA---LKAVGEALKLS 119
           + TL LAR          L  + + LK+ 
Sbjct: 538 VDTLPLARILYSDMKRFTLDTLAKRLKVD 566


>gi|325696784|gb|EGD38672.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK160]
          Length = 814

 Score = 44.0 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 79/295 (26%), Gaps = 51/295 (17%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---GAKIIQIGIVLIENGSITKTYETDVNPHEELDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  + + L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCDLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCHGIFLRRPQKLTSEKKLSQDFLTNLYLM 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG--LHLEDLTETTCQRVL 263
              ER +  +    +   L        + +T L    G  L +    +   ++VL
Sbjct: 242 GLEERPEQLKFACFMEEALNQQEPSFLEAQTGLGKTFGYLLPILSRGK---EKVL 293


>gi|325954712|ref|YP_004238372.1| 3'-5' exonuclease, PolB [Weeksella virosa DSM 16922]
 gi|323437330|gb|ADX67794.1| 3'-5' exonuclease, PolB [Weeksella virosa DSM 16922]
          Length = 228

 Score = 44.0 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 65/236 (27%), Gaps = 67/236 (28%)

Query: 2   ATLFIDFET------RSPIDLTKCGI----------------------CKYAEDVCVILF 33
             LFID ET       + +D     +                         AE   +I  
Sbjct: 8   KILFIDIETVPQAKDWNDLDERTQILWDKKTMHQRQELSAEKFYAHHAGILAEFGKIICI 67

Query: 34  AFGF---DDHPVELWDCVHDPVMPQVLKEAL-EN---TDVTIVAHNSY-FERTVLKACFN 85
           + G     +  V+ +   H+  + Q   + L EN   +D  + AHN   F+   +     
Sbjct: 68  SCGLVHQGEIRVKSFYGHHEEKILQDFCQLLHENYSKSDHLLCAHNGKEFDFPYIARRLI 127

Query: 86  LD-IPIHR-------------WICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKEL 129
           +  IPI +              + TL L +        +L  +   L + S K       
Sbjct: 128 IHQIPIPKLLQIQGKKPWEITLLDTLDLWKFGDYKHYTSLDLLAHILGIESPKD------ 181

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
                     +           +       YC+ DV +T               ++
Sbjct: 182 --------DIDGSQVAQIYYEEKNLDRIKNYCEKDV-ITLINVFLRMNHLPIIHKM 228


>gi|289809670|ref|ZP_06540299.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 187

 Score = 44.0 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFNL---DI 88
                  + D  +    K    +             +V HN+ F+   +   F L   DI
Sbjct: 64  EAFGVHGIADEFLLD--KPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDI 121

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|156935422|ref|YP_001439338.1| DNA polymerase II [Cronobacter sakazakii ATCC BAA-894]
 gi|156533676|gb|ABU78502.1| hypothetical protein ESA_03280 [Cronobacter sakazakii ATCC BAA-894]
          Length = 786

 Score = 44.0 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 62/243 (25%), Gaps = 71/243 (29%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYA---EDVCVILFAFGFDDHPVELWDCVHDPV 52
             + +D ET    +L   G+        Y    E+       F      +E       P 
Sbjct: 153 KWVSLDIETNRHGELYCIGLEGCGSRVVYMLGPENGDARGLDF-----ELEYV--ASRPQ 205

Query: 53  MPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------- 92
           + + L       + DV  +  N   F+  +L+     + + + + R              
Sbjct: 206 LIEKLNAWFARHDPDVL-IGWNVIQFDLRMLQKHAERYGVPLRLGRGNSELEWREHGFKN 264

Query: 93  -WICTLVLARSNG-------------LPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                    R                   +L+AV + L      + EGK           
Sbjct: 265 GVFFAQAAGRLIIDGIEALKSAFWNFSSFSLEAVSQEL------LGEGKA----IDNPWQ 314

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
                DR      E       Y   D  +   IF + E +         L +     G  
Sbjct: 315 RMDEIDRRF---AEDKPALATYNLKDCELVTRIFHKTEIMPF-------LLERATVNGLP 364

Query: 199 VDV 201
           VD 
Sbjct: 365 VDR 367


>gi|323495020|ref|ZP_08100109.1| ribonuclease D [Vibrio brasiliensis LMG 20546]
 gi|323310677|gb|EGA63852.1| ribonuclease D [Vibrio brasiliensis LMG 20546]
          Length = 346

 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 19/155 (12%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           +D   + L D      M       L++T V  V H    +  V +  F      +  + T
Sbjct: 22  YDGQTLSLIDPTVIDDMTA-FVHLLQDTSVLKVLHACGEDLEVFQNSFG--CLPYPMVDT 78

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            ++A   G   +                  + L     K E+      R           
Sbjct: 79  QLMAAFLGHGLSTGFAALV----------NEYLNVELDKSESRTDWLARPLT------DK 122

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
             EY   DV     ++++L    ++        Q 
Sbjct: 123 QLEYAAADVYYLLPLYEQLFENITQAGWWQAAQQE 157


>gi|191171723|ref|ZP_03033270.1| ribonuclease D [Escherichia coli F11]
 gi|190908053|gb|EDV67645.1| ribonuclease D [Escherichia coli F11]
 gi|284921723|emb|CBG34795.1| ribonuclease D [Escherichia coli 042]
          Length = 375

 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGISDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 126 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 169

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 170 TEASGWLPAALDECRLMQMRRQ 191


>gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1450

 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 23/141 (16%)

Query: 3   TLFIDFETR--SPID--LTKCGICKYAEDVCVILFAFGFDDHPV--ELW--------DCV 48
            +  D ET   SP++  + + G  K      +  F+   +       +         D V
Sbjct: 437 YVVFDIETTGFSPVNDKIIEIGAVKIKNGEVIDNFSHFVNPERSIPYVITELTSINNDMV 496

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN 103
            D    ++L         D  +VAHN+ F+   +K       +D   +  + T+ LAR  
Sbjct: 497 RDAETIEILLPKFMEFCADSVLVAHNAAFDTGFIKKNCRDLGIDFN-YSIMDTVPLARFL 555

Query: 104 GLPS---ALKAVGEALKLSSQ 121
                   L  V + L +S  
Sbjct: 556 CPDLKKVKLNLVAKHLGISLD 576


>gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 1493

 Score = 44.0 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 39/153 (25%), Gaps = 43/153 (28%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFD---DHPVELWDCVHDPVMPQVL 57
             +  D ET               E   +I F A  FD       +           +  
Sbjct: 439 KMVVFDLETTGLSP----------EFNEIIEFGAVVFDPVTGKTTKYDYLFKPKQPLKQF 488

Query: 58  K--------EALENT---------------DVTIVAHNSYFERTV---LKACFNLDIPIH 91
                    E LE+                D  +VAHN+ F+      L          +
Sbjct: 489 TIDLTNITPEMLEDKKNIDDDFDKIYELIKDSILVAHNANFDFNFLNSLSKRLGYGDLQN 548

Query: 92  RWICTLVLARSNGL---PSALKAVGEALKLSSQ 121
             I TL L+R          L AV +   +   
Sbjct: 549 TVIDTLTLSRLVRPALKSHRLGAVCKKFGILYD 581


>gi|260776343|ref|ZP_05885238.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607566|gb|EEX33831.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
          Length = 371

 Score = 44.0 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 50/174 (28%), Gaps = 27/174 (15%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D      M       L++T V  V H    +  V    F      +  + T
Sbjct: 47  FDGETLSLIDPTVIDDMTA-FVHLLKDTSVLKVLHACGEDLEVFNNSFG--CLPYPMVDT 103

Query: 97  LVLARSN--GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
            ++A     GL +   ++ E+             L     K E+      R   + +   
Sbjct: 104 QLMAAFLGHGLSTGFASLVESY------------LGVELDKSESRTDWLARPLTDKQLD- 150

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLS----SKEQELWYLDQTINDRGYCVDVALA 204
                Y   DV     ++++L          E      D     R   +D   A
Sbjct: 151 -----YAAADVHYLLPLYEKLLEEITQAGWWEAAQQESDLLATKRIKSLDPEKA 199


>gi|254821715|ref|ZP_05226716.1| ribonuclease D [Mycobacterium intracellulare ATCC 13950]
          Length = 430

 Score = 44.0 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 44/171 (25%), Gaps = 30/171 (17%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE----NTDVTIV 69
           +D  +    +Y+    +I          V +    H     + L+   E    +     +
Sbjct: 57  VDAERASGFRYSNRAYLIQIRRA-GSGTVLIDPVSHGRDPLEALRPVAEVLGTDE---WI 112

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKE 128
            H++  +   L     + +       T +  R  G     L  + E L            
Sbjct: 113 LHSADQDLPCLAE---VGMRPPALYDTELAGRLAGFERVNLATMVERL------------ 157

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                          D +K      W     Y   DV +  E+   +  + 
Sbjct: 158 ---LGFGLAKGHGAADWSKRPLPAEW---LNYAALDVELLIELRAAIAEVL 202


>gi|190571471|ref|YP_001975829.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018874|ref|ZP_03334682.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357743|emb|CAQ55194.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995825|gb|EEB56465.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 234

 Score = 44.0 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 66/235 (28%), Gaps = 51/235 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------- 54
             + +D ET     L      +  E  CV L                 +  +P       
Sbjct: 6   REIVLDTETTG---LDTKSGHRIIEIGCVELIN-RIPTGKTFHRYLNPERDIPYHSFKIH 61

Query: 55  ---QVL---KEALEN---------TDVTIVAHNSYFERTVLKACFN----LDIPIHRWIC 95
              +     K    +         ++  +V HN+ F+   L           I   R + 
Sbjct: 62  GISEEFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVLD 121

Query: 96  TLVLAR--SNGLPSALKAVGEALKLSSQKMEEGKELI--ARFCKGETHECLYDRNKPNHR 151
           TL LAR    G P++L A+ +   +S +  E    L+      K         +    + 
Sbjct: 122 TLPLARKKFVGSPASLNALCKRFDISLEGRELHGALVDAQLLAKVYVELTGGLQTFLFNN 181

Query: 152 EAWRLFGEYCKGDVTVTREIFKR--------LEPLSSKEQELWYLDQTINDRGYC 198
           E        C  D   T  I  +          P   +  E   L   IN+  + 
Sbjct: 182 E--------CAQDNNSTF-IQHKVRNLARREHSPSIKEIDEHKKLLDKINNPLWK 227


>gi|86131018|ref|ZP_01049617.1| 3'-5' exonuclease [Dokdonia donghaensis MED134]
 gi|85818429|gb|EAQ39589.1| 3'-5' exonuclease [Dokdonia donghaensis MED134]
          Length = 238

 Score = 44.0 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 59/230 (25%), Gaps = 70/230 (30%)

Query: 3   TLFIDFET------RSPIDLTKCGICK----------------------YAEDVCVILFA 34
            LF+D ET       S +D  +  +                        +AE   ++  +
Sbjct: 10  ILFLDIETVPQHPDFSDLDDVEKALYADKTRYLRKDEFTPEDYYERAGIWAEFGKIVCIS 69

Query: 35  F-----GFDDHPVELWDCVHDPV--MPQVLKEALEN----TDVTIVAHNSY-FERTVLKA 82
                   D           D    +    K  LE+     +  + AHN   F+   +  
Sbjct: 70  VGYFNTSTDGKRFRTTSFFGDDETKLLNEFKNLLEDHFNRREHLLCAHNGKEFDFPYIAR 129

Query: 83  CF---NLDIPIH-----------RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEG 126
                 + +P               I TL L +        +LK + + L + S K    
Sbjct: 130 RMIINGVTLPQKLNLFGKKPWEIPHIDTLDLWKFGDYKHYTSLKLMTKILGIPSPKD--- 186

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                        +    R              YC+ D     +I  +L 
Sbjct: 187 -----------DIDGSQVRQVYYEENDIDRIVVYCEKDTVAVAQILLKLR 225


>gi|323968571|gb|EGB63977.1| ribonuclease D [Escherichia coli M863]
 gi|327252925|gb|EGE64579.1| ribonuclease D [Escherichia coli STEC_7v]
          Length = 371

 Score = 44.0 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 56/204 (27%), Gaps = 50/204 (24%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-- 56
           + +D E     T                   + L    FD   + L D +   V+     
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPL---VITDWSP 61

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  L +  +T   H    +  V    F  ++P    I T +LA   G P +        
Sbjct: 62  LKAILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVE 119

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIF 172
           + S   +++ +       +  T                    EY   DV     +T ++ 
Sbjct: 120 EYSGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLM 163

Query: 173 KRLEP--LSSKEQELWYLDQTIND 194
              E         +   L Q    
Sbjct: 164 VETEASGWLPAALDECRLMQMRRQ 187


>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
 gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
           haemolysans ATCC 10379]
          Length = 1449

 Score = 44.0 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 33/203 (16%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILF-AF---------------GFDDHPV 42
            +  D ET         L +    K      +  F ++                  +  V
Sbjct: 429 YVVFDVETTGLSAERDRLIEIAAVKVKNGAEIDSFESYINPQRPISELITRLTSITNDDV 488

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
           +  D   +  +       L+  D+  VAHN+ F+   L  CF    L+   +  I TL +
Sbjct: 489 K--DAPLEKEVMTNFYNWLDKDDIL-VAHNAKFDLGFLDTCFERLGLENKNNASIDTLFV 545

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           +R+    +    +    KL   ++ +    I         +   +       + + L  E
Sbjct: 546 SRAENKEAKRHGLSNLAKLYKVRLVQHHRAI------YDTKATAEIFVKMLDQLYELGIE 599

Query: 160 Y-CKGDVTVTREIFKRLEPLSSK 181
           Y  + D  +  E+  +       
Sbjct: 600 YHNEIDEKIDLELAHKRSRTFPC 622


>gi|321465548|gb|EFX76549.1| hypothetical protein DAPPUDRAFT_55085 [Daphnia pulex]
          Length = 181

 Score = 44.0 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 5/96 (5%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69
           T   +DL       Y    C++  +    +    + D +      Q L E   +  +  +
Sbjct: 60  TVIGVDLEHHSDRSYRGITCLMQIS---TEKTDYIVDTLQLWDHLQPLNEVFCDPTIVKI 116

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
              +  +   L+  F + +       T   A   G 
Sbjct: 117 FQGADSDVIWLQRDFGIYV--VNLFDTFQAASLLGF 150


>gi|320173702|gb|EFW48889.1| Ribonuclease D [Shigella dysenteriae CDC 74-1112]
          Length = 371

 Score = 44.0 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +L+   G P +        + 
Sbjct: 64  AILRDPAITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILSAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 905

 Score = 44.0 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 29/142 (20%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCV-----------ILFAFGFDDHPVE---- 43
            +  D ET         + + G  K  E   +           +   +  ++        
Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVK-VEHGEITERFSTFVNPEVPIPYRIEELTSIRDDM 533

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA 100
           + D      +     E   +    +VAHN+ F+ + +        ++      I T+ LA
Sbjct: 534 VIDAPKIETILPQFMEFCGDA--IMVAHNADFDMSFIIKNCERQGIE-KEFTIIDTVALA 590

Query: 101 RSNGLPSA---LKAVGEALKLS 119
           R          L  V +AL +S
Sbjct: 591 RILLPQLNRFKLDTVAKALGVS 612


>gi|167586484|ref|ZP_02378872.1| DNA polymerase III, epsilon subunit [Burkholderia ubonensis Bu]
          Length = 375

 Score = 44.0 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 24/137 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD---HPVELWD------------CV 48
           +F+D ET                   +            +P +                V
Sbjct: 16  VFVDLETTGGSSAEHRITEIGVV--EIGPLGVSTWTSLVNPGQPIPPFIQQLTGISDAMV 73

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIPIHR-WICTLVLARSNG 104
            D      L  AL         VAHN+ F+R  L      + +  +   +CT+ L+R+  
Sbjct: 74  RDAPSFASLAPALFERLDGKLFVAHNASFDRGFLRAEFERIGLAFNPDVLCTVRLSRALF 133

Query: 105 L---PSALKAVGEALKL 118
                  L A+ E   L
Sbjct: 134 PRESRHGLDALIERHGL 150


>gi|172059933|ref|YP_001807585.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
 gi|171992450|gb|ACB63369.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 375

 Score = 44.0 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPREARHGLDALIERHG 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|70950310|ref|XP_744489.1| exonuclease [Plasmodium chabaudi chabaudi]
 gi|56524464|emb|CAH74590.1| exonuclease, putative [Plasmodium chabaudi chabaudi]
          Length = 406

 Score = 44.0 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 53/180 (29%), Gaps = 15/180 (8%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
               ++D ++   +   +K+ +EN     V H+   + + L      DI       TL  
Sbjct: 137 EKYYIFDLLN-KSVINSVKKIIENKKTLKVIHDCREDSSALYNQL--DIKFENVYDTLRA 193

Query: 100 ARSNGLPSALKAVGEA--LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                       + +   L L    +    + +    K           +P  + +    
Sbjct: 194 HMLLLEKKKENDIYQVSFLNLLHDYLGVKDDCLNNIKKEMYKNDKIWEIRPLSKISI--- 250

Query: 158 GEYCKGDVTVTREIFKRL------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             Y   +V     I+K        + +  K ++        +     VD+A    + + +
Sbjct: 251 -IYALKNVKYLLPIYKIFDKLISKKEVLEKSKDFVNYCFLNSRYKLPVDLAKRGNIIEAM 309


>gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1402

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 25/139 (17%)

Query: 4   LFIDFETR---SPIDLTKCGICKYAEDVCVI-LFAFGFDDH----------PVELWD-CV 48
           + +D ET    S  D          E+  +I  F+   D                 D   
Sbjct: 391 VVVDIETTGFDSQRDKIIEIGAVKIENGQIIERFSTFVDPEGKIPVRISELTGIYQDMVD 450

Query: 49  HDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
             P +   + E     +  +  VAHN+ F+   LK  +    + I  + +I TL L+R  
Sbjct: 451 KAPKLNDAILEFEKFASGSIL-VAHNAQFDIGFLKKAYHECGI-IFDYTYIDTLELSRRL 508

Query: 104 ---GLPSALKAVGEALKLS 119
                   L  V E L + 
Sbjct: 509 LTDLSSHKLNKVAEFLNVE 527


>gi|304408611|ref|ZP_07390232.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|307305439|ref|ZP_07585187.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
 gi|304352432|gb|EFM16829.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
 gi|306911742|gb|EFN42167.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
          Length = 242

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-------DIPIHRWICTLVLARSNG 104
            + Q     ++  ++  VAHN+ F+ + +   F+L          I + + TLV+A+   
Sbjct: 84  QVAQDFINFIDGAEI--VAHNANFDVSFMDHEFSLLQPRGPKTADICQILDTLVIAKFLH 141

Query: 105 LPS--ALKAVGEALKLS 119
                 L A+ +   + 
Sbjct: 142 PGQKNNLDALCKRYGVD 158


>gi|260655785|ref|ZP_05861254.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
 gi|260629401|gb|EEX47595.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
          Length = 208

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 24/141 (17%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDDH----------PVELWDCV 48
            + +D ET         + + G  K+        F+   D                 D V
Sbjct: 12  YVALDIETTGLSPRSCSIIEVGALKFVPGKKGEEFSSLIDPGCPIPASGRSIHGITDDMV 71

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFER----TVLKACFNLDIPIHRWICTLVLARS 102
                 + +   L +      +V HN+ F+      VL               TL L+R 
Sbjct: 72  AGQPRVEEVIAGLLDFVGPAPLVLHNAPFDLSFIAPVLDK-LGRKWQAMTVFDTLPLSRV 130

Query: 103 NGL---PSALKAVGEALKLSS 120
                   +L+++ +  +   
Sbjct: 131 AFPGLRSYSLESLSDFFEFKE 151


>gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
 gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
          Length = 315

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 69/258 (26%), Gaps = 39/258 (15%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLLEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIA-----RFCKGETHECLYDRNKPNHRE 152
                +     L+ +   L +         + I      + C     E     NK     
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAIEEEGKRKVNKAM--- 183

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                  Y    V       KR            YLD         + V         + 
Sbjct: 184 -LDETAVYEA--VKEILACNKRNVEWLRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LT 238

Query: 213 VERTKLDQELESLTYGLV 230
               +  +E+ +      
Sbjct: 239 EILEEDVKEICTSLKCEP 256


>gi|170739695|ref|YP_001768350.1| exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
 gi|168193969|gb|ACA15916.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
           4-46]
          Length = 222

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 45  WDCVHDPVM---PQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
           W   H          +   L   D  +VAHN+ F+   L           P     CT+ 
Sbjct: 84  WLLRHQDPARGHLDAVAALLAGAD-LVVAHNAAFDLGFLAREFRAAGRPDPARPTYCTME 142

Query: 99  LARSNGLPSA--LKAVGEALKL 118
             R  G P +  L AV   +KL
Sbjct: 143 AYRRRGEPGSSALDAVCRRVKL 164


>gi|269468831|gb|EEZ80435.1| ribonuclease D [uncultured SUP05 cluster bacterium]
          Length = 345

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 87/314 (27%), Gaps = 51/314 (16%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            L ID E     T  P+               + L       +   +     D      L
Sbjct: 20  ELAIDTEFKRVNTYYPV---------------LCLVQIATKKNTDCIDVLTLDD--LSPL 62

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            + L   D   + H++  +   L    +  +P  +   T + A     P+ +        
Sbjct: 63  FDKLYQDDCLWIVHSARQDIEAL-HYLSKQLP-KQLFDTQIAASLVNYPAQISYQALTES 120

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           L +  +E+    +    +                       EY   DV    + +++L+ 
Sbjct: 121 LQNVHLEKAYTRLDWTIRPLP----------------DEAIEYALDDVRYLLKNYRQLKT 164

Query: 178 LSSKEQELWYLDQTIN----DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
               E++  ++++          Y  D+  A    +       K   +   L+      +
Sbjct: 165 QLEVEEKSTWIEEEGKSLLDINLYNPDIKDAWQRVKGFSRLAKKYQLKAAQLSAWREYQA 224

Query: 234 RCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQAIQV---FNNRMRASRS 286
           +   K + W+  +  L    L +         + +      P    +          +++
Sbjct: 225 KKKNKPRKWILSDDKLISYTLGKDKLSGKTNSLFNEFLGHHPHINSMSINVEKNKIVTKT 284

Query: 287 AVLKLNTLVEAMNS 300
              K N L + +  
Sbjct: 285 EKSKKNELQKLIQK 298


>gi|194098390|ref|YP_002001448.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998794|ref|ZP_04718718.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           35/02]
 gi|240112723|ref|ZP_04727213.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           MS11]
 gi|240115471|ref|ZP_04729533.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID18]
 gi|240123321|ref|ZP_04736277.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID332]
 gi|240128023|ref|ZP_04740684.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493581|ref|ZP_05106752.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
 gi|260440719|ref|ZP_05794535.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           DGI2]
 gi|268594640|ref|ZP_06128807.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268598788|ref|ZP_06132955.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
 gi|268601147|ref|ZP_06135314.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
 gi|268681945|ref|ZP_06148807.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
 gi|268686413|ref|ZP_06153275.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
 gi|291044028|ref|ZP_06569744.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
 gi|293399220|ref|ZP_06643385.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
 gi|193933680|gb|ACF29504.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512621|gb|EEH61966.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
 gi|268548029|gb|EEZ43447.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268582919|gb|EEZ47595.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
 gi|268585278|gb|EEZ49954.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
 gi|268622229|gb|EEZ54629.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
 gi|268626697|gb|EEZ59097.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
 gi|291012491|gb|EFE04480.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
 gi|291610634|gb|EFF39744.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
 gi|317164085|gb|ADV07626.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 244

 Score = 44.0 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 64  QVLEEK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 P 148
            
Sbjct: 178 D 178


>gi|301612456|ref|XP_002935732.1| PREDICTED: coiled-coil domain-containing protein 141-like [Xenopus
            (Silurana) tropicalis]
          Length = 1411

 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 57/212 (26%), Gaps = 16/212 (7%)

Query: 458  NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRV 517
            +    + +    +  +              +  +H+          +       + ++  
Sbjct: 814  DELQLSQIQDQQTHFQTLYKLVVNLGREIISTIQHSKHITIPVMELQEQIAKMERDNACW 873

Query: 518  SELWNELHQAFEQTIENGKAIIARKRRDVPLV----YMKKDKNNLILMLPSGRSLVYRDV 573
            +   ++  +     ++ G  I                    K N       GR+L     
Sbjct: 874  NSTVDKQEKQLLSHLDFGTTIEDINELKESFKDLKKKFNNLKFNYTKKAEKGRNLKVIKN 933

Query: 574  GNNRSYLNTTTRQLTREYT-YGGKLTENIV---QAVSRDILAEGMMNATKAGYDIVLTVH 629
               +  +     Q  R+     GK         QA   D + E M +  K        VH
Sbjct: 934  QIQQVEMYAERMQALRKKVDNLGKKMPVPTVTPQANGADAVQEAMGDFQK-------QVH 986

Query: 630  D-EIVCETPDTDEFNASMLYHLMTSNPSWAKG 660
            D  IV E    +   A  L+H+M     W + 
Sbjct: 987  DFSIVIEEYKQNLEMAEDLHHIMEECQFWCEE 1018


>gi|237748400|ref|ZP_04578880.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
 gi|229379762|gb|EEO29853.1| exonuclease family protein [Oxalobacter formigenes OXCC13]
          Length = 327

 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 22/117 (18%)

Query: 3   TLFIDFETR---SPID-LTKCGICKYAEDVCV-ILFAF-----GFDDH-----------P 41
            +F+D ET    S +D + + G+ K         L +       ++D             
Sbjct: 78  IVFLDTETTGLSSDMDVIIELGLVKALFSPTAHRLVSIERIVSAYEDPGKPITPFITELT 137

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
               D V    + + +     +  V IVAHN+ F+R   +  F       +W C+LV
Sbjct: 138 GITDDMVRGKRIDETMVAGFLDDAVLIVAHNAAFDRPFFEKRF-RGFEEKKWACSLV 193


>gi|228476066|ref|ZP_04060774.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           hominis SK119]
 gi|228269889|gb|EEK11369.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           hominis SK119]
          Length = 905

 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 92/296 (31%), Gaps = 43/296 (14%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL----VL----- 99
            +   + E L++     VAHN  F+   +K  F   N+     + + TL    +      
Sbjct: 73  EIADDIYEQLKD--CIFVAHNVDFDLNFIKKAFEKSNIHFKPKKVLDTLELFKIAFPTEK 130

Query: 100 ARSNGLPSALKA--VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN-------- 149
           +      +      +  A +           +I  F K E+      +            
Sbjct: 131 SYQLSELANAHNIPLTNAHRADEDATTTAYLMIKAFKKFESLPIDTLKQLYYLSKHLKYD 190

Query: 150 -HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                + +  E+   D+      + + E +  K+Q+   + Q I  +G   D+ L  T  
Sbjct: 191 LFNILFEMVREHHNHDIDYQ---YAQFEQIIYKKQQDLKVPQ-IEFKGSLKDLYLEVTTA 246

Query: 209 QIVDVE------RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
             +            + ++L      L+ +     K   +L      ++E       +T 
Sbjct: 247 LELTYRPQQLYLSEIILEQLMHNDKALIEAPLGSGKSLAYLLAALMYNIETGRHVMISTN 306

Query: 260 QRVLSS--NKKLTPQAIQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            ++L     +K  P   +  + ++     +S    ++  L+  +  D      +  
Sbjct: 307 TKLLQHQLLQKDIPSINRALDFKINAALIKSKTDYISLGLISQILKDDTANYEVNI 362


>gi|195329844|ref|XP_002031620.1| GM26098 [Drosophila sechellia]
 gi|194120563|gb|EDW42606.1| GM26098 [Drosophila sechellia]
          Length = 583

 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 61/215 (28%), Gaps = 45/215 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D E      +T  G  +      V L           L+   H   +P+ L+E L
Sbjct: 78  KVLGFDCE-----WITVGGSRRP-----VALLQLSSHRGLCALFRLCHMKQIPKDLRELL 127

Query: 62  ENTDVTIVA---HNSYFERTVLKACFNLDIPIH---RWICTLVLARSNGLPSALKAVGE- 114
           E+ DV  V         +   L   + + +      R++C +   +    P  L  + + 
Sbjct: 128 EDDDVIKVGVAPQE---DAMKLSHDYGVGVASTLDLRFLCVMAGHK----PEGLGKLSKT 180

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L  +  K           C     + L  +              Y   D  +   I+++
Sbjct: 181 HLNYTLDKHW------RLACSNWEAKTLEPKQLD-----------YAANDALMAVAIYQK 223

Query: 175 LEPLSS--KEQELWYLD--QTINDRGYCVDVALAH 205
           L          +   LD     N     +DV    
Sbjct: 224 LCRDLQPKHFWQRSQLDDNSMHNKFEPFLDVDFTK 258


>gi|51243854|ref|YP_063738.1| hypothetical protein DP0002 [Desulfotalea psychrophila LSv54]
 gi|50874891|emb|CAG34731.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 274

 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 43/174 (24%), Gaps = 37/174 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-ELWDCVHDPVMPQVLKEALEN 63
           +ID ET    D           D  +   A  +D   +       +     + ++     
Sbjct: 87  YIDIETTGLSD-----------DAEITTIAV-YDGKKIMHYIQGHNLDDFVRDIRRY--- 131

Query: 64  TDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
             V I          F+  V++  F + +                L   L ++G    L 
Sbjct: 132 -KVLISYSGTG----FDLPVIERYFKIKLD----------HAHIDLRYVLASLGIRGGLK 176

Query: 120 SQKMEEGKELIARFCKGETHECLYDR--NKPNHREAWRLFGEYCKGDVTVTREI 171
             + + G +                R       + A +    Y   D      +
Sbjct: 177 GCEKQIGIDRGDLDGINGCFAITLWRAYQLQGDQAALQTLVAYNIEDSVNLERL 230


>gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 249

 Score = 44.0 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 49/154 (31%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVE----------------- 43
             + ID ET               +   +I  A   FD + V                  
Sbjct: 8   KFICIDCETTGLDP----------QQDRIIEVAVMCFDGNQVYAQMESLINPECPIPETS 57

Query: 44  ----------LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK----ACFNL--D 87
                     + D      +   + E + +    I+ H   F+  +L         +   
Sbjct: 58  IAIHHITQDMVKDKPTINHVLPQILELISD--HIIIGHGVGFDIEILAVAAERH-GIPCK 114

Query: 88  IPIHRWICTLVLARSNGLP--SALKAVGEALKLS 119
           I  +R++ TL +AR  G    ++L+ + +   + 
Sbjct: 115 IRKNRFLDTLRMARLYGESPVNSLEYLRKHFNIP 148


>gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
           WAL-14163]
 gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1511

 Score = 44.0 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 27/140 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYA---EDVCVI-----------LFAFGFDDHPVE----LW 45
           +  D ET     L    I   A   E+  ++              F  +         + 
Sbjct: 487 VVFDIETTGFSPLKNRIIEIGAVRVEEGRIVDKFSSFVNPDVPIPFEIEKLTGINDNMVL 546

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      +     E        +VAHN+ F+ + +K       L+      + T+ LAR 
Sbjct: 547 DAPKIDRVLPEFLEFCR--GAVMVAHNAGFDISFIKENARQQGLEFNPT-VLDTVSLARV 603

Query: 103 NGLPSA---LKAVGEALKLS 119
                    L  V + LK++
Sbjct: 604 LLPNLNRFKLDTVAKELKIN 623


>gi|237817379|ref|ZP_04596371.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
 gi|237788192|gb|EEP62408.1| DNA polymerase III subunit epsilon [Brucella abortus str. 2308 A]
          Length = 379

 Score = 44.0 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 121 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 180

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+   ++      W C
Sbjct: 181 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWAC 231


>gi|195108841|ref|XP_001999001.1| GI24274 [Drosophila mojavensis]
 gi|193915595|gb|EDW14462.1| GI24274 [Drosophila mojavensis]
          Length = 901

 Score = 44.0 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 34/179 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E              +    C++  +    D    ++D +       +L   L 
Sbjct: 298 QIAIDVE--------HHSYRTFMGITCLVQMSTRTKD---YIFDTLKLREEMHILNLVLT 346

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLSS 120
           +  V  + H +  +   L+   +L + I     T   A++  +   +L  + +  L L  
Sbjct: 347 DPKVLKILHGADLDIEWLQR--DLSLYIVNMFDTHRAAKALNMARLSLAFLLKHYLDLDV 404

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
            K  +  +                R  P      +   +Y + D      I++RL    
Sbjct: 405 DKSLQLADW-------------RMRPLP------QKLIDYARQDTHYLIYIYERLTNDL 444


>gi|262342149|gb|ACY54585.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 8/131 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   I +   KLV +DLAGIE R+ A          A   G         +  +   
Sbjct: 10  KDCRELFITNPTWKLVDSDLAGIELRLFAHYL-------ARYDGGRYAKILLEQDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQ-KMASTTGLNLNTFAHLVKTNSAPEEWEDAEN 480
           A+     R   K +     Y GG +       +   L+           +  +     E+
Sbjct: 63  AEKIGISRRQVKTITYCFLYGGGDQKLGLSFDNMLPLDKAKKKGAEIRRAYMDAIPGLED 122

Query: 481 FCRWMQENHPE 491
             +  +     
Sbjct: 123 LVKDTRRVAER 133


>gi|254517741|ref|ZP_05129797.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
           sp. 7_2_43FAA]
 gi|226911490|gb|EEH96691.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
           sp. 7_2_43FAA]
          Length = 188

 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 25/124 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYA---EDVCVI-LFAF-------------GFDDHPVEL 44
             +  D ET     +    I   A   E+  +I  +++               +    E+
Sbjct: 27  RYIAFDVETTGLSPINDKIIEVGAVLFENGEIIKKYSYLVNLEVVIPASATAVNHITNEM 86

Query: 45  W-DCVHDPVMPQVLKEALEN---TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTL 97
             D   +  +   L + L++       I AHN+ F+   +         D  IH ++ TL
Sbjct: 87  IQDATKEDTVYAELVKFLDDALKEQTVICAHNATFDMKFISETLMRLGYDGKIH-YVDTL 145

Query: 98  VLAR 101
            L+R
Sbjct: 146 SLSR 149


>gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus halodurans C-125]
 gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 942

 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 41/147 (27%), Gaps = 31/147 (21%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP----- 51
             + ID ET          + + G     ++  V  F    +           +      
Sbjct: 4   RFVVIDIETTGQSVAQGDRIIEIGAVVIEDEEAVESFCTLVNPERS--IPPFIEELTGIS 61

Query: 52  -----------VMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTL 97
                           L   LE      VAHN +F+ + L+           +   I T+
Sbjct: 62  DEMVKGAPTFHQCIPELMSMLE--GGVFVAHNVHFDLSFLQKLLEHEGYGPLLVPIIDTV 119

Query: 98  VLARSNGL---PSALKAVGEALKLSSQ 121
            L+R          L A+ E L L  +
Sbjct: 120 ELSRILLPTEESYKLSALTEQLGLEHE 146


>gi|297250280|ref|ZP_06863987.2| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839296|gb|EFH23234.1| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 253

 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 13  RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 72

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 73  EVLEGK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 126

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 127 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 186

Query: 148 P 148
            
Sbjct: 187 D 187


>gi|195500059|ref|XP_002097212.1| GE24622 [Drosophila yakuba]
 gi|194183313|gb|EDW96924.1| GE24622 [Drosophila yakuba]
          Length = 583

 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 75/584 (12%), Positives = 144/584 (24%), Gaps = 115/584 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D E      +T  G  +      V L           L+   H   +P+ L++ L
Sbjct: 78  KVLGFDCE-----WITVGGSRRP-----VALLQLSSHRGLCALFRLCHMKQIPKDLRDLL 127

Query: 62  ENTDVTIVA---HNSYFERTVLKACFNLDIPIH---RWICTLVLARSNGLPSALKAVGE- 114
           E+  V  V         +   L   + + +      R++C +   +    P  L  + + 
Sbjct: 128 EDDAVIKVGVAPQE---DAIKLSHDYGVGVASTLDLRFLCVMAGHK----PEGLGKLSKT 180

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L  +  K           C     + L  +              Y   D  +   I+++
Sbjct: 181 HLNYTLDKHW------RLACSNWEAKNLEPKQLD-----------YAANDALMAVAIYQK 223

Query: 175 LEPLSSKEQELWYL----DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           L      +     +        N     +DV      +                      
Sbjct: 224 LCRDLQPKYFWQRVQLDDHSLRNKFEPFLDVDFTKGFS---------------------- 261

Query: 231 SSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
                       L    G        +T  +  +   K  P        R  A+R+    
Sbjct: 262 ------------LNPTGGGVTHSKG-STQLKNNNWLSKKQP-------YRQMATRTKDFY 301

Query: 291 LNTLVEAMNSDGRLRGTLQFLGASRTGRWS-GCVFPPQNLPRP---SRSHEELDQIITHL 346
            N L++A   DG L  T+    AS     + G +   +          +   +  +  + 
Sbjct: 302 DNCLLQA--PDGELLCTIDRRKASWYLSQNLGTLINEEPFTVRLNFEPAGRAVGDVGRYY 359

Query: 347 PTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGE 406
            T   +           +R  V+  E +K            + +  + +   L       
Sbjct: 360 QTPKENQCVVCGDRDAYIRKNVVPREYRK-------HFPLVMKSHTSHDVLLLCPTCHQL 412

Query: 407 DLYVTTYARSFNVAPAQVTKDQRAIG----KVMELALGYQGGAKAFQKMASTTGLNLNTF 462
                   RS      +                +L      G       A          
Sbjct: 413 SNISDLRVRSKLADQCEAPFKHEDGSVKFHDDPQLKRVQSAGKALLHHGAKIPAAKKAEM 472

Query: 463 AHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWN 522
              +      +     E   +     +    +E+       ERV + +R K   + EL  
Sbjct: 473 QQTLLDYYTDQTDITEELLQQAANVEYR---VENTDYCQHGERVVQQYRDKFGGLVEL-- 527

Query: 523 ELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                 E+          + R    L  +  + + L +    GR
Sbjct: 528 ------ERLWREHFLHTMQPRFLPELWNVNHNADRLEVRASEGR 565


>gi|121635185|ref|YP_975430.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18]
 gi|120866891|emb|CAM10650.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18]
          Length = 253

 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 46/181 (25%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 13  RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 72

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 73  EVLEGK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 126

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 127 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 186

Query: 148 P 148
            
Sbjct: 187 D 187


>gi|47219815|emb|CAG03442.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1246

 Score = 44.0 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 45/372 (12%), Positives = 94/372 (25%), Gaps = 37/372 (9%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                 +   R    R +   +  L +        R      GA            PQ + 
Sbjct: 813  EINKMISFWRNAHKRISSQMVLWLRKVELPRIVSRHKDFDDGAQYGAIL------PQVIT 866

Query: 331  RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
              + +   ++      PT +T+       +   +++ V    G  LV AD+   E  + A
Sbjct: 867  AGTVTRRAVE------PTWLTASNARRDRVGSELKAMVQVPPGYHLVGADVDSQELWIAA 920

Query: 391  WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD----QRAIGKVMELALGYQGGAK 446
             +    +      T          +S        T D     R   KV      Y  G  
Sbjct: 921  VLGEAHFAGMHGCTAFGWMTLQGKKSQGTDLHSRTADAVGISREHAKVFNYGRIYGAGQA 980

Query: 447  AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERV 506
              +++       L+      K        +    +    +       +           V
Sbjct: 981  FAERLLMQFNHRLSQTEADRKAKQMYSLTKGVRRYHLSEEGEWLVKELGIEVEREENGSV 1040

Query: 507  KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGR 566
                 Q+  R++ L ++  +  +  +   +        D+         +        G 
Sbjct: 1041 S---LQELRRITRLASQCSRRKKWDLVEKRLWSGGTESDMFNKLESIAHSAQPATPVLGC 1097

Query: 567  SLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA---TKA 620
             +              T+R                VQ+ + D   ++   M         
Sbjct: 1098 RISRALEPKAVGNEFITSR------------VNWAVQSSAVDYLHLILVAMKWLCQEHDI 1145

Query: 621  GYDIVLTVHDEI 632
                 +++HDE+
Sbjct: 1146 DGRFCISIHDEV 1157


>gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 1433

 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 32/142 (22%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LW------- 45
           ET    D+   G+     D  + L A       +                 +        
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKVKGGEIIDRFESFANPHQPLSATIIELTGITD 474

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           D + D      + +  E    D T+VAHN+ F+   +        L+   +  I TL LA
Sbjct: 475 DMLTDAPEVDEVFKKFEKWMGDHTLVAHNASFDMGFINVGFKKAGLEKTKNPVIDTLELA 534

Query: 101 RSNGL---PSALKAVGEALKLS 119
           R          L  + + + + 
Sbjct: 535 RFLFPEMKNHRLNTLCKKMDIE 556


>gi|154315768|ref|XP_001557206.1| hypothetical protein BC1G_04456 [Botryotinia fuckeliana B05.10]
 gi|150846852|gb|EDN22045.1| hypothetical protein BC1G_04456 [Botryotinia fuckeliana B05.10]
          Length = 307

 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 10/150 (6%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  +  V  +   +   L + F + +     I   ++        + K +    
Sbjct: 140 LKAILESIFIPKVIFDVRNDSDALYSHFGIKLQ--GVIDLQLME-LATRSHSQKFLSGLG 196

Query: 117 K-LSSQKMEEGKEL-----IARFCKGETHECLYDRNKPNHREAWRLFG-EYCKGDVTVTR 169
           + +    ++  +EL     I +            R +  +         +YC  DV +  
Sbjct: 197 RCMDQDLVQTPEELEVRSSIKKRGVQLFAPEKGGRYEVFNDRPLDPAIVDYCVQDVQLMP 256

Query: 170 EIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
           +++       S   + W        +   +
Sbjct: 257 QLWDIYNAKLSLMDKRWAAKIERETKARLL 286


>gi|17988635|ref|NP_541268.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           16M]
 gi|17984439|gb|AAL53532.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str.
           16M]
          Length = 272

 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 14  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 73

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+   ++      W C
Sbjct: 74  TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWAC 124


>gi|119775015|ref|YP_927755.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119767515|gb|ABM00086.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 242

 Score = 44.0 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 47/165 (28%), Gaps = 38/165 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF------------------GFDDHPVE 43
             + +D ET          +      + +                         D+  + 
Sbjct: 9   RQIILDTETTGMNQGAGA-VYLGHRIIEIGCVEVVNRRLTGRTFHQYINPGQAIDEEAIA 67

Query: 44  LWDCVHDP--------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR--- 92
           +    +D          +     + +      +VAHN+ F+ + +   F++ +P      
Sbjct: 68  VHGITNDRVAGEPRFHEIVGGFLDFIR--GAELVAHNASFDMSFINHEFSMLVPQGPKVE 125

Query: 93  ----WICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                + +L +A+         L A+ +   + + +      L+ 
Sbjct: 126 DICTVLDSLAIAKFLHPGQKNNLDALCKRYGIDNTRRTYHGALLD 170


>gi|184201057|ref|YP_001855264.1| putative ribonuclease D [Kocuria rhizophila DC2201]
 gi|183581287|dbj|BAG29758.1| putative ribonuclease D [Kocuria rhizophila DC2201]
          Length = 420

 Score = 44.0 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 42/142 (29%), Gaps = 24/142 (16%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAV 112
              + EAL    V  V H +  +   L     LD+       T +  R  GL    L ++
Sbjct: 86  LAEVDEALR--GVEWVLHAATQDMPCLAE---LDMHPDELFDTELGGRLLGLRKVGLASM 140

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E L         G  L              D ++      W     Y   DV V  ++ 
Sbjct: 141 TEEL--------LGFTL-------SKEHSAVDWSQRPLPVDW---LNYAALDVEVLVQLR 182

Query: 173 KRLEPLSSKEQELWYLDQTIND 194
              E   ++  +L +  +    
Sbjct: 183 WATEERLARAGKLDWALEEFEH 204


>gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 1437

 Score = 44.0 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL---PSA 108
            L +   +  +  V HN  F+   L    +     DI  +  I TL L+R          
Sbjct: 484 KLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLELSRMLHPERKNHK 541

Query: 109 LKAVGEALKLS 119
           L  + +  K+S
Sbjct: 542 LDTLAKQYKVS 552


>gi|50556422|ref|XP_505619.1| YALI0F19404p [Yarrowia lipolytica]
 gi|49651489|emb|CAG78428.1| YALI0F19404p [Yarrowia lipolytica]
          Length = 1046

 Score = 44.0 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 49/195 (25%), Gaps = 8/195 (4%)

Query: 302 GRLRGTLQFLGASRTGRWSGCVFPPQNL-PRPSRSHEELDQIITHLPTSITSDPDPLQII 360
            R R   Q       G   G       + PR         + + +   + ++       I
Sbjct: 625 NRSRIMSQHCIWDGDGVDMGRGPGFGIIIPRIIPMGTITRRCVENTWLTASNAKKNR--I 682

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              ++S + A  G   V AD+   E   +A + G+        T          +S    
Sbjct: 683 GSELKSMIKAPPGYSFVGADVDSEEL-WIASLYGDSCFKNHGSTAIGWMTLEGTKSEGTD 741

Query: 421 PAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
               T       R   K+      Y  G K  + +      N+                +
Sbjct: 742 LHSKTASILGISRNEAKIFNYGRIYGAGLKFAEALLKQFSPNVTDAEASTLAGQLYTSTK 801

Query: 477 DAENFCRWMQENHPE 491
             + +         E
Sbjct: 802 GKKIYSIGKYSGGTE 816


>gi|126437831|ref|YP_001073522.1| DNA polymerase III subunit epsilon [Mycobacterium sp. JLS]
 gi|126237631|gb|ABO01032.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS]
          Length = 330

 Score = 44.0 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 37  FDDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFN 85
            D  P  +     +          +   L E L     T+VAHN  F+ + L        
Sbjct: 60  VDPGPTHVHGLTAEMLEGAPRFGDIVADLAELLR--GRTLVAHNVGFDYSFLTAEAELVG 117

Query: 86  LDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEE 125
            ++PI   +CT+ LAR   L      L+ +     +   K  +
Sbjct: 118 AELPIDSVMCTVELARRLDLGTENLRLETLAAHWGVPQLKPHD 160


>gi|82751054|ref|YP_416795.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
 gi|123549199|sp|Q2YY51|DING_STAAB RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|82656585|emb|CAI81008.1| probable ATP-dependent DNA helicase [Staphylococcus aureus RF122]
          Length = 897

 Score = 44.0 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 85/284 (29%), Gaps = 41/284 (14%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL---VLARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     R I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKRVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
           +                K +I  F K E       +             +Y   D+    
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYY----LSKQLKYDLYDIFFEM 198

Query: 170 EIFKRLEPLSSKEQELWYLDQT---------INDRGYC-------VDVALAHTLNQIVDV 213
                 +PL+   ++   +             N  G         VD        Q + +
Sbjct: 199 VRQYDAKPLAKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVDQLGLTYRPQQLYL 258

Query: 214 ERTKLDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKL 269
             T LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K 
Sbjct: 259 AETILDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKD 318

Query: 270 TPQAIQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            P   +  N ++     +S    ++  L+  +  D      +  
Sbjct: 319 IPAMNEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNI 362


>gi|25028351|ref|NP_738405.1| hypothetical protein CE1795 [Corynebacterium efficiens YS-314]
 gi|23493636|dbj|BAC18605.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 413

 Score = 44.0 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 52/191 (27%), Gaps = 33/191 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            ID E        +    +Y +   +I          +      H P + + L   L   
Sbjct: 43  AIDTE--------RASGFRYDDRAFLIQIR-RRGAGTLLFDPESHRPELSRSLGPVLN-- 91

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
               + H +  +   L     LD+       T +  R  G     L A+ E +       
Sbjct: 92  GQEWIIHAAATDLPSLAW---LDLHPGTLFDTELAGRLAGFELVNLAAMVEQI------- 141

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                               D +K    E W     Y   DV +  E+   +  +   + 
Sbjct: 142 --------FDLHLLKGHGAEDWSKRPLPEEW---LNYAALDVEMLLELADVMAEILDNQG 190

Query: 184 ELWYLDQTIND 194
           +L + +Q    
Sbjct: 191 KLDWAEQEFEH 201


>gi|134292561|ref|YP_001116297.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
 gi|134135718|gb|ABO56832.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 205

 Score = 44.0 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 43/153 (28%)

Query: 1   MATLF-IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-----CVHDPVMP 54
           M T+  +DFET         G  +  E   ++L          E+ D           +P
Sbjct: 1   MQTVAVLDFETTGLSP--NLG-DRATEIAVILL-------RDGEIVDRYQSLMNAGRRIP 50

Query: 55  QVLKEA--LENT--------------------DVTIVAHNSYFERTVLKACFN-LDIPI- 90
             +     + N                        +VAHN+ F++   +A    L +   
Sbjct: 51  SDVVALTGITNEMIATAPPVSKVMKEAAAFVGSHPVVAHNAGFDKRFWQAELGSLGVAAD 110

Query: 91  HRWICTLVLARSNGLP---SALKAVGEALKLSS 120
           H + CT+++AR          L ++ + L+L  
Sbjct: 111 HPFACTMLVARRLYPHARSHRLSSLADLLRLPQ 143


>gi|259507406|ref|ZP_05750306.1| ribonuclease D [Corynebacterium efficiens YS-314]
 gi|259165031|gb|EEW49585.1| ribonuclease D [Corynebacterium efficiens YS-314]
          Length = 407

 Score = 44.0 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 52/191 (27%), Gaps = 33/191 (17%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            ID E        +    +Y +   +I          +      H P + + L   L   
Sbjct: 37  AIDTE--------RASGFRYDDRAFLIQIR-RRGAGTLLFDPESHRPELSRSLGPVLN-- 85

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
               + H +  +   L     LD+       T +  R  G     L A+ E +       
Sbjct: 86  GQEWIIHAAATDLPSLAW---LDLHPGTLFDTELAGRLAGFELVNLAAMVEQI------- 135

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                               D +K    E W     Y   DV +  E+   +  +   + 
Sbjct: 136 --------FDLHLLKGHGAEDWSKRPLPEEW---LNYAALDVEMLLELADVMAEILDNQG 184

Query: 184 ELWYLDQTIND 194
           +L + +Q    
Sbjct: 185 KLDWAEQEFEH 195


>gi|257785157|ref|YP_003180374.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
 gi|257473664|gb|ACV51783.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
          Length = 978

 Score = 44.0 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 42/177 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHDPVMPQV 56
             + +D ET       KC + + +        A       +        D      +P+ 
Sbjct: 18  DIVVLDTETTGL-SFKKCSLIEIS--------AAKLSGREIIERFQTFVD--PGCPIPEE 66

Query: 57  LKEA--LENTDVT--------------------IVAHNSYFERTVLKACFNLDIPIHRWI 94
           +     + + DV                     ++AHN+ F+RT ++           WI
Sbjct: 67  ITTLTSITDEDVKGAPSAKEAVAALAEFVGGLPVLAHNATFDRTFIERVPGGTSVSDTWI 126

Query: 95  CTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            TL L+R          L ++ EA   + +      + +   C       L   N P
Sbjct: 127 DTLSLSRIALPRLSSHKLSSMAEAFG-TMKVTHRASDDVDALCGMWRILLLGLMNLP 182


>gi|23500730|ref|NP_700170.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
 gi|161621054|ref|YP_001594940.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
 gi|254703325|ref|ZP_05165153.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
 gi|260567746|ref|ZP_05838215.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261753952|ref|ZP_05997661.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
 gi|23464383|gb|AAN34175.1| exonuclease, putative [Brucella suis 1330]
 gi|161337865|gb|ABX64169.1| Exonuclease RNase T and DNA polymerase III [Brucella canis ATCC
           23365]
 gi|260154411|gb|EEW89492.1| exonuclease [Brucella suis bv. 4 str. 40]
 gi|261743705|gb|EEY31631.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 3
           str. 686]
          Length = 332

 Score = 44.0 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+   ++      W C
Sbjct: 134 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWAC 184


>gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1449

 Score = 44.0 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP 106
             +     + + +    +VAHN+ F+   +K       N+D      I TL +AR     
Sbjct: 488 DKVIGKFVDFIGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARDLFPD 544

Query: 107 ---SALKAVGEALKLSSQK 122
                L  + + L L+ +K
Sbjct: 545 LKKYGLGDLNKTLGLALEK 563


>gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1442

 Score = 44.0 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 56/185 (30%), Gaps = 38/185 (20%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDCVH---- 49
           T    D+   G+     D  + + A    D  V                 + +  H    
Sbjct: 426 TYVVFDVETTGLSA-VYDTIIEIAAVKIQDGEVVDTFERFANPGRPLSNTIIELTHITDD 484

Query: 50  ----DPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
                P + +VLKE  E   D  +VAHN+ F+   L        L    +  I TL L R
Sbjct: 485 MLKDAPDISEVLKEYNEWIGDAVLVAHNASFDIGFLNVGLKKAGLPKSNNPVIDTLELGR 544

Query: 102 SNGL---PSALKAVGEALKLS----SQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                     L  + +   +      + + + +     F K        +R    H E  
Sbjct: 545 FLYPDFKNYRLNTLAKKFNVELTQHHRAIYDTEATGQIFLKMLKDA--RNRGITYHDELN 602

Query: 155 RLFGE 159
           +  GE
Sbjct: 603 QYMGE 607


>gi|156933634|ref|YP_001437550.1| ribonuclease D [Cronobacter sakazakii ATCC BAA-894]
 gi|156531888|gb|ABU76714.1| hypothetical protein ESA_01456 [Cronobacter sakazakii ATCC BAA-894]
          Length = 369

 Score = 44.0 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 71/258 (27%), Gaps = 46/258 (17%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQ 55
             L +D E     T                   + L    +D   V L D        P 
Sbjct: 19  RALALDTEFVRTRTYY---------------PQLGLIQL-YDGENVALIDPLTITDWAP- 61

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +  L++ +VT   H    +  V +  F   +    +I T VLA   G P +       
Sbjct: 62  -FQALLQDQNVTKFLHAGSEDLEVFQNAF--SMMPDPFIDTQVLASFVGHPLSCGFATLV 118

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREI 171
              +   +++ +       +  T                    +Y   DV     +  ++
Sbjct: 119 EHHTGVVLDKSESRTDWLARPLT----------------ERQCDYAAADVWYLLPIAHKL 162

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
            +++         +         RG  +D   A          R +    L+ L    + 
Sbjct: 163 MEQVREAGWLTAAINECRLMTQRRGEVLDPDEAWREITNAWQLRPRQLACLKLLAGWRLR 222

Query: 232 SSRCLEKLKTWLFLETGL 249
            +R  +    ++  E  L
Sbjct: 223 KARERDMAVNFVVREENL 240


>gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334]
 gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           casei ATCC 334]
          Length = 1444

 Score = 44.0 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL---PSA 108
            L +   +  +  V HN  F+   L    +     DI  +  I TL L+R          
Sbjct: 491 KLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLELSRMLHPERKNHK 548

Query: 109 LKAVGEALKLS 119
           L  + +  K+S
Sbjct: 549 LDTLAKQYKVS 559


>gi|221134302|ref|ZP_03560607.1| DNA polymerase III, epsilon subunit [Glaciecola sp. HTCC2999]
          Length = 240

 Score = 44.0 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 40/157 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF------GFDDHPVELWDCVHDPVMP 54
           M  + +D ET     +++     +     +I              +   ++      + P
Sbjct: 1   MRQIVLDTETTG---MSRESGEHFTHGHRIIEIGCVELVDRKLTGNHYHVYINPQQDIDP 57

Query: 55  QVLK------EALENTDVTI---------------VAHNSYFERTVLKACFNLDI----- 88
           + +       E LE+  +                 V HN+ F+   +   F L+      
Sbjct: 58  EAIAVHGITNEFLEDKPLFKEIAQGFIDFIDGAELVIHNAPFDVGFMDLEFALNPATALT 117

Query: 89  ---PIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
                   + TLVLA+         L A+     + +
Sbjct: 118 RTEKFCTVLDTLVLAKKMRPGQRNNLDALCREYGIDN 154


>gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205]
 gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205]
          Length = 585

 Score = 44.0 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 42/147 (28%), Gaps = 27/147 (18%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH--------------PVELW 45
           + +D ET         +T+ G  K      + + A   +                   L 
Sbjct: 33  VVVDLETTGGAPDGGGITEIGAVKVRGGEQLGVLATLVNPGVPVPPFVTVLTGITQAMLL 92

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-R 101
                  +     E L    V  VAHN+ ++   LK   A      P  R + T  LA R
Sbjct: 93  PAPSIAQVLPSFLEFLSADAVL-VAHNAPYDVGFLKAACAAHGHRWPNPRILDTAALARR 151

Query: 102 SNG----LPSALKAVGEALKLSSQKME 124
                      L  +    + S+Q   
Sbjct: 152 VLSRDEVPNRRLGTLAAYFRTSTQPTH 178


>gi|50084331|ref|YP_045841.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ADP1]
 gi|49530307|emb|CAG68019.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter sp. ADP1]
          Length = 450

 Score = 44.0 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 62/225 (27%), Gaps = 30/225 (13%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDD-HPV 42
             L +D ET        D              LT   I  Y      +  +         
Sbjct: 223 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVDVHGITDE 282

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI--PIHRWICTL 97
            L D      + + L E L      I+AHN+ F+   L        L     +     TL
Sbjct: 283 FLLDKPKYAEIAEPLFEYL--KGAEIIAHNASFDMNFLDMEFKRAGLPTLSEVCEVTDTL 340

Query: 98  VLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW- 154
            LA++       +L A+    ++ ++       L+      + +  +         +A  
Sbjct: 341 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 400

Query: 155 -RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
            R   +       +  ++       +  E+   ++       G  
Sbjct: 401 QREQNQRKGQRARIEADLPVIRPSANELEKHNEWVKSYQEKNGEP 445


>gi|87122723|ref|ZP_01078598.1| Ribonuclease D [Marinomonas sp. MED121]
 gi|86162020|gb|EAQ63310.1| Ribonuclease D [Marinomonas sp. MED121]
          Length = 387

 Score = 44.0 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 48/189 (25%), Gaps = 30/189 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + +D E      + +             L      +H V +         P  L + + 
Sbjct: 38  VIAVDTE-----FIRRTTFYPITG-----LIQISEGEHAVLVDPLAISNWQP--LIDLMT 85

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  V  V H    +  V      +      +  T V             V     LS  K
Sbjct: 86  NQSVVKVFHACSEDLEVFDRLLGVV--PSPFYDTQVAEAY---------VSGQWSLSYVK 134

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
           +    + I    K ET      R     +        Y   DV    +++        K+
Sbjct: 135 LILAYKNI-EIAKDETRSDWLKRPLTEAQ------KRYAALDVIHLIDVYHTQMDALDKK 187

Query: 183 QELWYLDQT 191
             L +  + 
Sbjct: 188 NMLAWALED 196


>gi|297571338|ref|YP_003697112.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931685|gb|ADH92493.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 200

 Score = 43.6 bits (101), Expect = 0.100,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 36/148 (24%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-------------PVELW-- 45
           M    +D ET    DL      +  E   ++L +   +                 +    
Sbjct: 1   MTYAVVDVETTGL-DLAT---DRIIEIG-IVLLSDSLEQSGYFHSLIDPQRSITAQHIHH 55

Query: 46  -------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-----KACFNLDIPIHRW 93
                  D     ++ + + + L      IVAHN+ F+   L     +A   + I     
Sbjct: 56  ISSAMVADAPSFALVAERVAKVL--DGQIIVAHNAPFDLGFLNAEFARAQAGISIDRANA 113

Query: 94  ICTLVLARSNGL--PSALKAVGEALKLS 119
           +CTL  +R        +L  +   L + 
Sbjct: 114 VCTLDQSRIYCPEGSHSLIGLAARLGIE 141


>gi|78212673|ref|YP_381452.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9605]
 gi|78197132|gb|ABB34897.1| Exonuclease [Synechococcus sp. CC9605]
          Length = 280

 Score = 43.6 bits (101), Expect = 0.100,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 30/141 (21%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGF-------DDHPVELWDCVHDPV 52
           L ID ET          +        V    +L    F          P+          
Sbjct: 52  LIIDTETSGLDPQQDQCLELGCILFDVPSRSVLAQQSFLLPVDSNAAEPINRIPAAVTRR 111

Query: 53  MPQVLKEA------LENTDVTIVAHNSYFERTVLKACFNLDIPIH---RWICTLV----- 98
            PQ  +EA      L +    +VAHN+ F+R      F L +       W+CT+      
Sbjct: 112 -PQPWREALVWFEHLLDAADLLVAHNAAFDRQW----FGLGVVPATATPWLCTMDDIRWP 166

Query: 99  LARSNGLPSALKAVGEALKLS 119
             R   L  +++ +  A  + 
Sbjct: 167 AERQLRLRPSVRDLALAYGVP 187


>gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
 gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
           marthii FSL S4-120]
          Length = 1367

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 72/289 (24%), Gaps = 56/289 (19%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-----LWDCVHD-------------- 50
           T    D+   G+     D  + L      +  +        D  H               
Sbjct: 426 TYCVFDVETTGLSA-VYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDD 484

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                    V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL L
Sbjct: 485 MVKGSDPIDVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLEL 542

Query: 100 ARSNGLP---SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           AR          L  + +   +      +     E  A        +     +   H   
Sbjct: 543 ARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDFHDSL 602

Query: 154 WRLFGE--------------YCKGDVTV--TREIFKRLEPLSSKEQELWYLDQTINDRGY 197
               GE              Y +  V +    ++                  Q    R  
Sbjct: 603 NDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREG 662

Query: 198 CVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            + +  A +  ++ +    K  Q  E +           + +   L   
Sbjct: 663 LI-IGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIER 710


>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
 gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
          Length = 331

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 24/138 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHD------- 50
           +D ET        +    + +      V      L     D  PV +     D       
Sbjct: 25  VDVETTGLARDDRIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDVLEGAPL 84

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSNGLP 106
              + Q     L +    +VAHN+ F+ +++   +     + P+ + +CT+ L++  GLP
Sbjct: 85  FRDIAQEFSARLAD--RVLVAHNAVFDWSMIAREYARAETEAPVRQRLCTIALSKELGLP 142

Query: 107 ---SALKAVGEALKLSSQ 121
                L+++     +  Q
Sbjct: 143 LPNHKLESLAAHFGVVQQ 160


>gi|240014290|ref|ZP_04721203.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           DGI18]
 gi|240117765|ref|ZP_04731827.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID1]
 gi|240121853|ref|ZP_04734815.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           PID24-1]
 gi|240125570|ref|ZP_04738456.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           SK-92-679]
 gi|268603465|ref|ZP_06137632.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
 gi|268684159|ref|ZP_06151021.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
 gi|268587596|gb|EEZ52272.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
 gi|268624443|gb|EEZ56843.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
          Length = 244

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 49/181 (27%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIP----- 89
              +      +      + + + + L      ++ HN+ F+   L   F  + +P     
Sbjct: 64  QVLEEK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRVGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 P 148
            
Sbjct: 178 D 178


>gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
 gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_33]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP 106
             +     + + +    +VAHN+ F+   +K       N+D      I TL +AR     
Sbjct: 488 DKVIGKFVDFIGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARDLFPD 544

Query: 107 ---SALKAVGEALKLSSQK 122
                L  + + L L+ +K
Sbjct: 545 LKKYGLGDLNKTLGLALEK 563


>gi|225686761|ref|YP_002734733.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC 23457]
 gi|256262103|ref|ZP_05464635.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|225642866|gb|ACO02779.1| Exonuclease RNase T and DNA polymerase III [Brucella melitensis
           ATCC 23457]
 gi|263091793|gb|EEZ16124.1| exonuclease [Brucella melitensis bv. 2 str. 63/9]
 gi|326411169|gb|ADZ68233.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
 gi|326554460|gb|ADZ89099.1| DNA polymerase III subunit epsilon [Brucella melitensis M5-90]
          Length = 332

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+   ++      W C
Sbjct: 134 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWAC 184


>gi|213582095|ref|ZP_03363921.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 172

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFNL---DI 88
                  + D  +    K    +             +V HN+ F+   +   F L   DI
Sbjct: 64  EAFGVHGIADEFLLD--KPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDI 121

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23]
 gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23]
 gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei LC2W]
 gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus casei BD-II]
          Length = 1444

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL---PSA 108
            L +   +  +  V HN  F+   L    +     DI  +  I TL L+R          
Sbjct: 491 KLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLELSRMLHPERKNHK 548

Query: 109 LKAVGEALKLS 119
           L  + +  K+S
Sbjct: 549 LDTLAKQYKVS 559


>gi|325687825|gb|EGD29845.1| DNA polymerase III [Streptococcus sanguinis SK72]
          Length = 814

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 72/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCGLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCHGIFLRRPQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER +  +    +   L        + +T L    G  L 
Sbjct: 242 GLEERPEQLKFARFMEEALDQQKPSFLEAQTGLGKTFGYLLP 283


>gi|240275320|gb|EER38834.1| DNA polymerase gamma [Ajellomyces capsulatus H143]
          Length = 1084

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 64/269 (23%), Gaps = 11/269 (4%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ V A  G   V AD+   E
Sbjct: 623 PQIIPMGTITRRAVENTWLTASNAKAN------RVGSELKAMVRAPPGYVFVGADVDSEE 676

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   +S        T       R   KV      Y
Sbjct: 677 L-WIASLVGDAQFQIHGGNAIGFMTLEGTKSAGTDLHSKTASILGISRNDAKVFNYGRIY 735

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +++            +E +       +          E      
Sbjct: 736 GAGLKFAATLLRQFNPSMSEQETKRVAAKLYKETKGEAPNHSYSISLRSSRKQERPRTPV 795

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
               + +A  ++                Q+       +     D  +     D    I +
Sbjct: 796 LGAGITEALMRRFINKGSFMTSRINWAIQSSGVDYLHLLIISMDFLIRRFNLDARLAITV 855

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTRE 590
               R LV        +         TR 
Sbjct: 856 HDEIRYLVKEHDKYRAAMALQVANLWTRA 884


>gi|154487175|ref|ZP_02028582.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
           L2-32]
 gi|154085038|gb|EDN84083.1| hypothetical protein BIFADO_01016 [Bifidobacterium adolescentis
           L2-32]
          Length = 261

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/139 (10%), Positives = 36/139 (25%), Gaps = 22/139 (15%)

Query: 2   ATLFIDFETRS---PIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCV------- 48
             + +D ET        + + G  +      V  ++   +     P ++           
Sbjct: 98  DYVAVDIETTGLGRDARIIELGAVRIRHGRKVASYSQLVNPQIPIPAKVTQITGITDRNV 157

Query: 49  HDPVMPQVLKEAL--ENTDVTIVAHNSY-FERTVLKA---CFNLDIPIHRWICTLVLARS 102
                               T + HN   F+  V+          +P   +  T+ L+++
Sbjct: 158 KGKPTIDKALPKFYAFCGRDTWIGHNIRRFDIPVIAREAQRVGAGMPDVSFYDTMELSQA 217

Query: 103 NGL---PSALKAVGEALKL 118
                    +  +     +
Sbjct: 218 LLPQLDHHRVVDLIRYFGI 236


>gi|322699619|gb|EFY91379.1| DNA polymerase gamma [Metarhizium acridum CQMa 102]
          Length = 1090

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 69/260 (26%), Gaps = 24/260 (9%)

Query: 260 QRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRW 319
           +  L  N           + R R     V+    + +   S  R          ++    
Sbjct: 563 KEALEMNAS----CSYWISARDRIMSQMVVYDEDIPKGQASRRRR---------TQPKAD 609

Query: 320 SGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVA 379
           S     PQ +P  + +   ++        +  +       +   +++ V A +G   V A
Sbjct: 610 SHGFILPQVIPMGTITRRAVENTWLTASNAKKN------RVGSELKAMVKAPKGYCFVGA 663

Query: 380 DLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVM 435
           D+   E   +A + G+                   ++        T       R   KV 
Sbjct: 664 DVDSEEL-WIASLVGDATFKIHGGNAIGFMTLEGTKAAGTDLHSRTAGILGITRNDAKVF 722

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
                Y  G K    +      +L+    +   +      +  +   + +          
Sbjct: 723 NYGRIYGAGLKFAATLLRQFNPSLSERQTMEVASKLYANTKGTKTNRKVIYNKPFWRGGT 782

Query: 496 DLFIGTACERVKKAWRQKHS 515
           + F+    E   +  R +  
Sbjct: 783 ESFVFNKLEEFAEQERPRTP 802


>gi|170577048|ref|XP_001893862.1| DNA polymerase I family protein [Brugia malayi]
 gi|158599875|gb|EDP37305.1| DNA polymerase I family protein [Brugia malayi]
          Length = 977

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 50/176 (28%), Gaps = 40/176 (22%)

Query: 47  CVHDPVMPQ-----VLKEALENTDVTI----VAHNSYFERTVLKACFNLDIPIHRWICTL 97
            V+   +P+      L     N         + HN  F+R+ ++  +       R+  T+
Sbjct: 180 LVNGGDIPELYRLNHLIAFEANEKBLKHRLIIGHNVAFDRSRVREQYYRKGTNTRFWDTM 239

Query: 98  VLARSNGLPSALKA--VGEALKLSSQKMEEG-----------------KELIARFCKGET 138
            +A        +    V    K  ++  + G                   L  + C    
Sbjct: 240 SMA---IPIYGMADHQVALYEKKDTEVDDSGPIGWIDYWRSLVCKNSLSALHEKLCGTTN 296

Query: 139 HECLYDRNKP--NHREAWRL-------FGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
                +++      +E              YC  DV    E+++ L P  +K    
Sbjct: 297 SLKPLNKSLQTFFVKEPIDEIRRSFQDLTTYCAYDVVACFELYQVLYPEFTKRFPH 352


>gi|89274974|gb|ABD65937.1| ribonuclease D [Streptomyces fungicidicus]
          Length = 430

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 29/181 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           +D  +    +Y +   ++      +      +            L EAL  + V  V H 
Sbjct: 68  VDAERASGYRYGQRAYLV--QLRREGAGTALIDPVACPD--LSALGEAL--SGVEWVLHA 121

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L+    + +   R   T +  R  G P   L A+ E   +    +E+G   + 
Sbjct: 122 ATQDLPCLRE---IGMVPSRLFDTELAGRLAGFPRVGLGAMVE--NVLGFVLEKGHSAVD 176

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              +                E W     Y   DV +  ++   LE    ++ +L +  Q 
Sbjct: 177 WSTRPL-------------PEPW---LRYAALDVELLVDLRDALEKELDRQGKLDWARQE 220

Query: 192 I 192
            
Sbjct: 221 F 221


>gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 1482

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 12/129 (9%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
           D        + + E +++    +VAHN+ F+ T L             +  I TL ++R 
Sbjct: 497 DKPSIEQAFKQINEIIKDA--ILVAHNANFDFTFLSYWSEKLGYSKLENTIIDTLTISRI 554

Query: 103 NGL---PSALKAVGEALKLSSQKME----EGKELIARFCKGETHECLYDRNKPNHREAWR 155
                    L ++ + + +S         +    I         +    + K      W 
Sbjct: 555 IYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDETRKKIKIITDSDWN 614

Query: 156 LFGEYCKGD 164
                   D
Sbjct: 615 KIDPINYAD 623


>gi|331647298|ref|ZP_08348392.1| ribonuclease D [Escherichia coli M605]
 gi|330911610|gb|EGH40120.1| ribonuclease D [Escherichia coli AA86]
 gi|331044081|gb|EGI16217.1| ribonuclease D [Escherichia coli M605]
          Length = 371

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNIFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum 5521]
 gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1472

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 23/138 (16%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHP------VELWDCVHD-- 50
              +D ET         +T+ GI K  +   +  F+   +         VE+ +   D  
Sbjct: 446 YCVLDLETTGFSPKLEKITEIGIMKVKDGKVIDKFSTFVNPEKPIPPRVVEVTNITDDMV 505

Query: 51  ---PVMPQVLKEALEN-TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN 103
                + +V  + LE      +VAHN+ F+   L+        D     ++ TL LA+  
Sbjct: 506 RNAETIDKVFPKMLEFIEGSILVAHNAEFDIGFLRHYAKVLGHDFDFT-YLDTLSLAQDL 564

Query: 104 GL---PSALKAVGEALKL 118
                   L  + + L +
Sbjct: 565 FPQYKSYKLGRIAKNLGI 582


>gi|49082166|gb|AAT50483.1| PA1816 [synthetic construct]
          Length = 247

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 42/150 (28%), Gaps = 32/150 (21%)

Query: 1   MATLFIDFETRSPI------------------DLTKCGICKYAE-DVCVILFAFGFDDHP 41
           M ++ +D ET                       LT      Y + D  V   A       
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPDREVDEGAIAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--------DIPIHR 92
            E   D      +     E +      ++ HN+ F+   +   F L              
Sbjct: 61  NEYLKDKPRFREVANDFFEFIR--GAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCS 118

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL++AR         L A+ +   + +
Sbjct: 119 VLDTLLMARERHPGQRNNLDALCKRYGVDN 148


>gi|15597013|ref|NP_250507.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1]
 gi|107101248|ref|ZP_01365166.1| hypothetical protein PaerPA_01002281 [Pseudomonas aeruginosa PACS2]
 gi|218892230|ref|YP_002441097.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58]
 gi|254234910|ref|ZP_04928233.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719]
 gi|296389793|ref|ZP_06879268.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1]
 gi|313110514|ref|ZP_07796399.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016]
 gi|9947801|gb|AAG05205.1|AE004608_4 DNA polymerase III, epsilon chain [Pseudomonas aeruginosa PAO1]
 gi|7229492|gb|AAF42851.1| mismatch repair protein MutD [Pseudomonas aeruginosa PAO1]
 gi|126166841|gb|EAZ52352.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719]
 gi|218772456|emb|CAW28238.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa LESB58]
 gi|310882901|gb|EFQ41495.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016]
          Length = 246

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 42/150 (28%), Gaps = 32/150 (21%)

Query: 1   MATLFIDFETRSPI------------------DLTKCGICKYAE-DVCVILFAFGFDDHP 41
           M ++ +D ET                       LT      Y + D  V   A       
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPDREVDEGAIAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--------DIPIHR 92
            E   D      +     E +      ++ HN+ F+   +   F L              
Sbjct: 61  NEYLKDKPRFREVANDFFEFIR--GAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCS 118

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL++AR         L A+ +   + +
Sbjct: 119 VLDTLLMARERHPGQRNNLDALCKRYGVDN 148


>gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 1454

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP 106
             +     + + +    +VAHN+ F+   +K       N+D      I TL +AR     
Sbjct: 493 DEVIGKFVDFIGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARDLFPD 549

Query: 107 ---SALKAVGEALKLSSQK 122
                L  + + L L+ +K
Sbjct: 550 LKKYGLGDLNKTLGLALEK 568


>gi|322417781|ref|YP_004197004.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
 gi|320124168|gb|ADW11728.1| putative PAS/PAC sensor protein [Geobacter sp. M18]
          Length = 835

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 43/150 (28%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVHDPVMPQVLKEA- 60
            +  D ET            + ++   V+   A       V+  D  H  V P     A 
Sbjct: 641 YVVFDTETTGL---------QISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAE 691

Query: 61  ------LEN--------------------TDVTIVAHNSYFERTVLKAC---FNLDIPIH 91
                 +E+                     D  +VAHN+ F++  L        L +  +
Sbjct: 692 STAFHRIEDHMVADAPSMNEVYPQFVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLPLVEN 751

Query: 92  RWICTLVLARSNGL---PSALKAVGEALKL 118
             + TL L+          +L A+ + + +
Sbjct: 752 PILDTLFLSVGLHSGTEGHSLDAMAQRMGI 781


>gi|58040389|ref|YP_192353.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
 gi|58002803|gb|AAW61697.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
          Length = 228

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 47/153 (30%), Gaps = 42/153 (27%)

Query: 1   MAT-LFIDFETRS-PIDLTKCGICKYAEDVCVILFAFGFDD---HPVELWDCVHDPVMPQ 55
           M   +  D ET     D+      +  E   + L     DD             +  +P 
Sbjct: 1   MKRSILFDTETTGFDPDMG----DRIIEIAALELI----DDLPTGEAYHVLIHPERDIPA 52

Query: 56  VL-------------KEALEN---------TDVTIVAHNSYFERTV----LKACFNLDIP 89
                          K               D  ++AHN+ F+       LKAC    + 
Sbjct: 53  EATKVHGFRIEDLEGKPIFSEVADGFLEFIGDSPMIAHNARFDFKFVNAELKACGREPLD 112

Query: 90  IH-RWICTLVLAR--SNGLPSALKAVGEALKLS 119
              R I T+ +AR    GLP++L A+     + 
Sbjct: 113 YASRAIDTVEMARKKYPGLPASLDALCRRFGID 145


>gi|88855710|ref|ZP_01130373.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
 gi|88815034|gb|EAR24893.1| DNA polymerase III subunit epsilon [marine actinobacterium
           PHSC20C1]
          Length = 417

 Score = 43.6 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVL 99
           + D      +   L + LE     +VAHN+ F+       L+            +CT+ L
Sbjct: 65  IVDAPAFEHIAGQLVDLLE--GRVLVAHNASFDLKFLVAELERTAAWMSTDFVSLCTMQL 122

Query: 100 A--RSNGLPSALKAVGEALKLSSQ 121
           A     G   AL     AL +   
Sbjct: 123 AREYLPGAGRALADCCAALDIQLD 146


>gi|68500002|gb|AAY97945.1| hypothetical protein [Plasmid pMCBF1]
 gi|133711762|gb|ABO36582.1| hypothetical protein [uncultured bacterium pMCBF6]
          Length = 291

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 47/190 (24%), Gaps = 37/190 (19%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYAE-------DVCVIL-FAFGFDDHPVELW------ 45
           M   + +D ET     + +       +       +  +    A   D   V         
Sbjct: 117 MKEGVVLDTETTGLDGVAQVIEIAIVDWNGKTLINQRIRPTVAISVDAQRVHGISMDDLA 176

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
           DC     +   ++  LE     +V +N+ +++ +L                         
Sbjct: 177 DCPAWTDIAPEVRRVLE--GRPVVIYNASYDQRMLYQTAK-------------------S 215

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
            + L  +   + L +                +                W+       GD 
Sbjct: 216 TAGLDDLDWIINLDTHCAMTMAA-REYGATNKYGTISLANAVIQAGIEWQGAAHSALGDA 274

Query: 166 TVTREIFKRL 175
             T  + +++
Sbjct: 275 LTTLALARKM 284


>gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
           magna ACS-171-V-Col3]
          Length = 1421

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
           D      +     + + +   T++AHN+ F+   +K       ++ P+  +I TL  AR+
Sbjct: 463 DMPKIDAVLPEFLKFVGD--CTLIAHNADFDMGFIKKNCIDLGIN-PVRTYIDTLAFARA 519

Query: 103 NGLP---SALKAVGEALKLS 119
                    L  + +   ++
Sbjct: 520 LESHLKNHKLDTLTKKYNVN 539


>gi|284118970|ref|ZP_06386770.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283829449|gb|EFC33823.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 238

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 45/168 (26%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQ-------VLKEALENTDVTIVAHN-SYFERTVLK 81
           ++LF+   +      W   H+  + +        L+ AL       + HN   F+   LK
Sbjct: 73  LLLFSDAMEYRGAVSWYGTHEQELLRRFWARLGELRPAL------FITHNGLGFDLPFLK 126

Query: 82  ACFNLD------------IPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGK 127
               +                     T+ +  +        L  +  AL++ + K   GK
Sbjct: 127 KRSIIHRVKPSMEISLARFRTEPVYDTMAIWSNWDTRGWVKLDVLARALQVET-KSGSGK 185

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           ++   + +G                  R   EYC  D  VT   ++R+
Sbjct: 186 QVADMWAQGRR----------------REIAEYCLRDTYVTYACYQRM 217


>gi|269219422|ref|ZP_06163276.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211118|gb|EEZ77458.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 206

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 51/201 (25%), Gaps = 34/201 (16%)

Query: 1   MATLFIDFETRSPID----LTKCGICKYAEDVC-----------VILFAFGFDDH--PVE 43
           M    +D ET         + + G+    E              +      F       +
Sbjct: 1   MGYAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSLVNPLRGMGAVFVHGLTDAD 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-----KACFNLDIPIHRWICTLV 98
           + D      +   ++     +   +VAHN+ F+   L     +A + + +P    +CT+ 
Sbjct: 61  VADAPTLADLLPQIRGLF--SGRALVAHNATFDVGFLNASFARAGYGMHVPREATVCTME 118

Query: 99  LARSNGLPSALK----------AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
           L++    P              A  +  +  +        L              +R   
Sbjct: 119 LSKIYLPPGRHGLAAAAERAGVATAKRHRALADAHTAAGLLRHYLNAEADGVRYAERAFS 178

Query: 149 NHREAWRLFGEYCKGDVTVTR 169
              EA                
Sbjct: 179 RSGEAVEPAAWIEARGAAAEL 199


>gi|256015766|ref|YP_003105775.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
 gi|255998426|gb|ACU50113.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
          Length = 332

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+   ++      W C
Sbjct: 134 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWAC 184


>gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Lactobacillus casei str. Zhang]
          Length = 1444

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL---PSA 108
            L +   +  +  V HN  F+   L    +     DI  +  I TL L+R          
Sbjct: 491 KLFQQFCDGAIM-VGHNVTFDVGFLDNGYERHGLADID-NPVIDTLELSRMLHPERKNHK 548

Query: 109 LKAVGEALKLS 119
           L  + +  K+S
Sbjct: 549 LDTLAKQYKVS 559


>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
 gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens C str. JGS1495]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 25/142 (17%)

Query: 3   TLFIDFETR---SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD------------C 47
            +  D ET    S  D          +D  ++  +F     P                  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPKVNIPYKITELTSITQNM 493

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           V+       +         D  +VAHN+ F+   +K         +  +  + T+ LAR 
Sbjct: 494 VNGQPTIDEVLPKFMEFVGDSVLVAHNAAFDVGFIKKNLMDMGKTLK-NPVMDTVPLARY 552

Query: 103 NGLPS---ALKAVGEALKLSSQ 121
                    L  V + L +S +
Sbjct: 553 LYPDLKKVKLNLVAKHLGISLE 574


>gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1454

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP 106
             +     + + +    +VAHN+ F+   +K       N+D      I TL +AR     
Sbjct: 493 DEVIGKFVDFIGDA--VLVAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARDLFPD 549

Query: 107 ---SALKAVGEALKLSSQK 122
                L  + + L L+ +K
Sbjct: 550 LKKYGLGDLNKTLGLALEK 568


>gi|321452292|gb|EFX63714.1| hypothetical protein DAPPUDRAFT_66837 [Daphnia pulex]
          Length = 181

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 5/92 (5%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +DL       Y       L     D     + D +      Q L +   + ++  +   +
Sbjct: 64  VDLEHHSDRSYR--GITCLMQISTDKTD-YIIDTLKLWDHLQPLNKVFCDPNIVKIFQGA 120

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGL 105
             +   L+  F + +       T   A   G 
Sbjct: 121 DSDVIWLQRDFGIYV--VNLFDTFQAASLLGF 150


>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1433

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 32/141 (22%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDC------ 47
           T    D+   G+     +  + L A       +                 + D       
Sbjct: 418 TYVVFDVETTGLSA-VYNTIIELAAVKVQGGEIIDRFESFANPHEPLSPTIIDLTGITDD 476

Query: 48  --VHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                P +  VLK+      +  +VAHN+ F+   L A +    +D   +  I TL + R
Sbjct: 477 MVADAPEIHDVLKDFKAWCGNDILVAHNAAFDMAFLDAGYQKAGMDKAANPVIDTLEMGR 536

Query: 102 SNGLP---SALKAVGEALKLS 119
                     L  + +   + 
Sbjct: 537 MLYPTFKNYRLNTLCKKFNIE 557


>gi|333030386|ref|ZP_08458447.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
 gi|332740983|gb|EGJ71465.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
           DSM 18011]
          Length = 279

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 40/144 (27%)

Query: 2   ATLFIDFET-RSPID--LTKCGICKYAEDVCVILFAFGFDDHPVELW------------- 45
             + ID ET  S     + + G+  Y  D  ++            L              
Sbjct: 5   DFIAIDVETATSAKPRFICQIGL-AYVLDGEIV-------KKESYLVQPPHNHIEYRNTM 56

Query: 46  -------DCVHDPVMPQVLKEALENTDV-TIVAHNSYFERTVLKA---CFNLDIPIHRWI 94
                  D    P +PQV ++   +     +VAHN+ F+  V+      F +   +  +I
Sbjct: 57  IHGIYESDTAQAPTLPQVWEKIGFDLRYNQLVAHNAKFDEAVIAENLFHFRIPNNLRSFI 116

Query: 95  CTLVLARSNGLPSALKAVGEALKL 118
           CT        L   L+ +  A ++
Sbjct: 117 CT----YEL-LHLGLEDLCYAYQI 135


>gi|254700203|ref|ZP_05162031.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
 gi|261750696|ref|ZP_05994405.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
 gi|261740449|gb|EEY28375.1| exonuclease RNase T and DNA polymerase III [Brucella suis bv. 5
           str. 513]
          Length = 332

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+   ++      W C
Sbjct: 134 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWAC 184


>gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101]
 gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens SM101]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 25/142 (17%)

Query: 3   TLFIDFETR---SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD------------C 47
            +  D ET    S  D          +D  ++  +F     P                  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPKVNIPYKITELTSITQNM 493

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           V+       +         +  +VAHN+ F+   +K         +  +  + T+ LAR 
Sbjct: 494 VNGQPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKTLK-NPVMDTVPLARY 552

Query: 103 NGLPS---ALKAVGEALKLSSQ 121
                    L  V + L +S +
Sbjct: 553 LYPDLKKVKLNLVAKHLGISLE 574


>gi|307176637|gb|EFN66105.1| Probable exonuclease mut-7-like protein [Camponotus floridanus]
          Length = 1053

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 47/179 (26%), Gaps = 22/179 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA- 60
            + ID E                +   + L     +D+ V + D       +P++  E  
Sbjct: 402 IVGIDLE--WKPSFGT-------KQPELALIQIATEDN-VYILDVTTLGNELPELWVELG 451

Query: 61  ---LENTDVTIVAHNSYFERTVLKACFN----LDIPIHRWICTLVLARSNGLPSALKAVG 113
                N ++  +      + TV++        +      ++  ++L R          + 
Sbjct: 452 LTLFGNKNIVKIGFGIAHDITVIRNSIPALSSIKNHGQGYLDLMILWRKLTEDYNF--IF 509

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                 +   +   +L+         +     N             Y   D     EI+
Sbjct: 510 PYKGDPNFTSKSLSKLVELCFGQRLDKSDQFSNWELRPL-RESQIIYAALDAYCLLEIY 567


>gi|256058832|ref|ZP_05449048.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
 gi|261322770|ref|ZP_05961967.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
 gi|261298750|gb|EEY02247.1| exonuclease RNase T and DNA polymerase III [Brucella neotomae 5K33]
          Length = 332

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+   ++      W C
Sbjct: 134 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWAC 184


>gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13]
 gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens CPE str. F4969]
 gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13]
 gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens CPE str. F4969]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 25/142 (17%)

Query: 3   TLFIDFETR---SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD------------C 47
            +  D ET    S  D          +D  ++  +F     P                  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPKVNIPYKITELTSITQNM 493

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           V+       +         +  +VAHN+ F+   +K         +  +  + T+ LAR 
Sbjct: 494 VNGQPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKTLK-NPVMDTVPLARY 552

Query: 103 NGLPS---ALKAVGEALKLSSQ 121
                    L  V + L +S +
Sbjct: 553 LYPDLKKVKLNLVAKHLGISLE 574


>gi|109899113|ref|YP_662368.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
 gi|109701394|gb|ABG41314.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
          Length = 400

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 83/280 (29%), Gaps = 40/280 (14%)

Query: 4   LFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           + +D E   TR+                 + L    +D   + L D +        LK  
Sbjct: 35  IAVDTEFVRTRTLYP-------------QLGLIQI-YDGQQIALIDPLEISDFTA-LKAI 79

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           L + ++  V H+   +          DI       +   A   G+  +L           
Sbjct: 80  LTDENIVKVLHSCSEDIETFICAL--DIVPRPIFDSQFAAAITGMGPSL---------GY 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K+ E   L  +  KGE+      R     +       +Y   DV    +++  L   + 
Sbjct: 129 AKLVEV-MLDIQVDKGESRTDWLARPLSPKQ------CQYAAYDVLYLFQLYPTLCDKTL 181

Query: 181 KEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
            +    ++   + +        V   L +   +       K    L+ LT      ++  
Sbjct: 182 AQGRQAWVFAEMENLTRKKLSQVPYELLYLNIKNNWHVTGKSLYVLQQLTAWRAKEAQQR 241

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQV 276
           +    ++  E  L          +  L     LTPQ I++
Sbjct: 242 DLALNFVVREANLVEVAKRLPASKNALHQISGLTPQEIRI 281


>gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri
           LC str. 95010]
 gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 1482

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 12/129 (9%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
           D        + + E +++    +VAHN+ F+ T L             +  I TL ++R 
Sbjct: 497 DKPSIEQAFKQINEIIKDA--ILVAHNANFDFTFLSYWSEKLGYGKLENTIIDTLTISRI 554

Query: 103 NGL---PSALKAVGEALKLSSQKME----EGKELIARFCKGETHECLYDRNKPNHREAWR 155
                    L ++ + + +S         +    I         +    + K      W 
Sbjct: 555 IYPDLKSHRLGSLAKRVNISYDPSIAHRGDYDADILADIYERMLDETRKKIKIITDSDWN 614

Query: 156 LFGEYCKGD 164
                   D
Sbjct: 615 KIDPINYTD 623


>gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7]
 gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7]
          Length = 1440

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 26/143 (18%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDHPVE------LWDCVHD-- 50
            +  D ET         +T+ G  K      +       +           L    +D  
Sbjct: 403 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDRLQMFVNPGKSISSRITNLTSITNDMV 462

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLVLAR 101
                   +   + E  ++    +VAHN+ F+   L      +      +  I +L LAR
Sbjct: 463 RNEPTIDALLPRIIEFFDD--CILVAHNANFDIGFLNENLRRNNMPEITNPIIDSLALAR 520

Query: 102 SNGLP---SALKAVGEALKLSSQ 121
           +   P     L  V  + +++  
Sbjct: 521 AILKPMKSYRLGNVCRSYRVNYD 543


>gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 472

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
              L E +   ++ +VAHN+ F+ T L+        DIP   + CTL  +R+  L     
Sbjct: 192 IDELVEFV--GELPVVAHNAQFDATALREACRAVGRDIPNIMFACTLAQSRAAKLKVQNH 249

Query: 108 ALKAVGEALKLSSQK 122
            L  + E   +  +K
Sbjct: 250 RLPTLAEHFGVQLEK 264


>gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977]
 gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium
           abscessus]
          Length = 600

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 24/138 (17%)

Query: 4   LFIDFETRS---PIDLTKCGICKYAEDVCVIL-FAFGFDDH---PVELWDCV-------- 48
           + +D ET       D              V+   A   D     P ++            
Sbjct: 29  VVVDLETTGGSAENDAITEIGAVKVRGGEVLGELATLVDPQRSLPPQIVRLTGITSAMLV 88

Query: 49  HDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL-----VL 99
             P + QVL   LE      +VAHN+ F+   LK       +D P    +CT+     VL
Sbjct: 89  DAPPIAQVLPAFLEFARGAVLVAHNAGFDIGFLKAAARQCGIDWPQPAVLCTVRLARRVL 148

Query: 100 ARSNGLPSALKAVGEALK 117
           +R      +L A+ + L 
Sbjct: 149 SRDEAPRVSLGALAQLLG 166


>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
 gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens NCTC 8239]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 25/142 (17%)

Query: 3   TLFIDFETR---SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD------------C 47
            +  D ET    S  D          +D  ++  +F     P                  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPKVNIPYKITELTSITQNM 493

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           V+       +         D  +VAHN+ F+   +K         +  +  + T+ LAR 
Sbjct: 494 VNGQPTIDEVLPKFMEFVGDSVLVAHNAAFDVGFIKKNLMDMGKTLK-NPVMDTVPLARY 552

Query: 103 NGLPS---ALKAVGEALKLSSQ 121
                    L  V + L +S +
Sbjct: 553 LYPDLKKVKLNLVAKHLGISLE 574


>gi|315634676|ref|ZP_07889960.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476624|gb|EFU67372.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 253

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 59/225 (26%), Gaps = 37/225 (16%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V +    +  +   ++   + PV P+ +K  
Sbjct: 9   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPEAIKVH 68

Query: 59  ----EALENT-----------DVTI----VAHNSYFERTVLKACF---NLDIPIH---RW 93
               E L +            +       + HN+ F+   +   F   NL I  +   + 
Sbjct: 69  GITDEMLADKPDFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICQV 128

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKP 148
             TL +AR         L A+   L + + K      L+                     
Sbjct: 129 TDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTGGQTSLFD 188

Query: 149 NHR-EAWRLFGEYCKGDVTV---TREIFKRLEPLSSKEQELWYLD 189
            +  E  +   E              +    E       E   L 
Sbjct: 189 ENESEIIQQVNEQQIQSAVAFSHNLRLLTPTEEELQAHLEYLKLI 233


>gi|297203084|ref|ZP_06920481.1| ribonuclease D [Streptomyces sviceus ATCC 29083]
 gi|297148288|gb|EDY56116.2| ribonuclease D [Streptomyces sviceus ATCC 29083]
          Length = 262

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 27/180 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D  +    +Y +   ++            +            L EAL  +    V H +
Sbjct: 68  VDAERASGYRYGQRAYLVQLRRA-GAGTALIDPVACPD--LSGLGEAL--SGAEWVLHAA 122

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIAR 132
             +   L+    + +   R   T +  R  G P   L A+ E   +    +E+G   +  
Sbjct: 123 TQDLPCLRE---IGMIPSRLFDTELAGRIAGFPRVGLGAMVE--GVLGFVLEKGHSAVDW 177

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
             +                E W     Y   DV +  ++   LE    ++ +L +  Q  
Sbjct: 178 STRPL-------------PEPW---LRYAALDVELLVDLRDALEKELDRQGKLEWALQEF 221


>gi|62317837|ref|YP_223690.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
           9-941]
 gi|83269816|ref|YP_419107.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
           Abortus 2308]
 gi|148558112|ref|YP_001257920.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
 gi|189023090|ref|YP_001932831.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
 gi|254690675|ref|ZP_05153929.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
           870]
 gi|254696020|ref|ZP_05157848.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
           Tulya]
 gi|254699129|ref|ZP_05160957.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254705536|ref|ZP_05167364.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M163/99/10]
 gi|254710765|ref|ZP_05172576.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
 gi|254732573|ref|ZP_05191151.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
           292]
 gi|256029148|ref|ZP_05442762.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
           M292/94/1]
 gi|256043877|ref|ZP_05446797.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111058|ref|ZP_05452120.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157340|ref|ZP_05455258.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
 gi|256253680|ref|ZP_05459216.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
 gi|256255857|ref|ZP_05461393.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
           C68]
 gi|260167759|ref|ZP_05754570.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
 gi|260545071|ref|ZP_05820892.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260565052|ref|ZP_05835537.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260756251|ref|ZP_05868599.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260760381|ref|ZP_05872729.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260763621|ref|ZP_05875953.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882073|ref|ZP_05893687.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|261216447|ref|ZP_05930728.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|261220817|ref|ZP_05935098.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261312940|ref|ZP_05952137.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261318335|ref|ZP_05957532.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261757195|ref|ZP_06000904.1| exonuclease [Brucella sp. F5/99]
 gi|265986133|ref|ZP_06098690.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|265990297|ref|ZP_06102854.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|265992595|ref|ZP_06105152.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|265995827|ref|ZP_06108384.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|297249226|ref|ZP_06932927.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
 gi|62198030|gb|AAX76329.1| hypothetical exonuclease [Brucella abortus bv. 1 str. 9-941]
 gi|82940090|emb|CAJ13133.1| Exonuclease [Brucella melitensis biovar Abortus 2308]
 gi|148369397|gb|ABQ62269.1| putative exonuclease [Brucella ovis ATCC 25840]
 gi|189021664|gb|ACD74385.1| Exonuclease [Brucella abortus S19]
 gi|260098342|gb|EEW82216.1| exonuclease [Brucella abortus NCTC 8038]
 gi|260152695|gb|EEW87788.1| exonuclease [Brucella melitensis bv. 1 str. 16M]
 gi|260670699|gb|EEX57639.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 4
           str. 292]
 gi|260674042|gb|EEX60863.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676359|gb|EEX63180.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 6
           str. 870]
 gi|260871601|gb|EEX78670.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 9
           str. C68]
 gi|260918054|gb|EEX84915.1| exonuclease RNase T and DNA polymerase III [Brucella abortus bv. 3
           str. Tulya]
 gi|260919401|gb|EEX86054.1| exonuclease RNase T and DNA polymerase III [Brucella ceti B1/94]
 gi|261297558|gb|EEY01055.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           B2/94]
 gi|261301966|gb|EEY05463.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M163/99/10]
 gi|261737179|gb|EEY25175.1| exonuclease [Brucella sp. F5/99]
 gi|262550124|gb|EEZ06285.1| exonuclease RNase T and DNA polymerase III [Brucella ceti
           M490/95/1]
 gi|262763465|gb|EEZ09497.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           3 str. Ether]
 gi|263000966|gb|EEZ13656.1| exonuclease RNase T and DNA polymerase III [Brucella melitensis bv.
           1 str. Rev.1]
 gi|264658330|gb|EEZ28591.1| exonuclease RNase T and DNA polymerase III [Brucella pinnipedialis
           M292/94/1]
 gi|297173095|gb|EFH32459.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
           B3196]
          Length = 332

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+   ++      W C
Sbjct: 134 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWAC 184


>gi|332756741|gb|EGJ87088.1| exonuclease family protein [Shigella flexneri 4343-70]
 gi|333004838|gb|EGK24360.1| exonuclease family protein [Shigella flexneri K-218]
          Length = 220

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSLLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGLKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
 gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP-- 106
                + + +++    +VAHN+ F+   L             +  I TL ++R+      
Sbjct: 461 EAIDEILDYIKDD--VLVAHNATFDYYFLNEELRRIGRKPLTNVVIDTLDMSRAVLPDRR 518

Query: 107 -SALKAVGEALKLS 119
              L  +     ++
Sbjct: 519 AYRLGNLSRYYHVN 532


>gi|320157018|ref|YP_004189397.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
 gi|319932330|gb|ADV87194.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
          Length = 390

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 39/140 (27%), Gaps = 18/140 (12%)

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V  V H    +  V    F   IP+   + T ++A   G   +        + 
Sbjct: 87  ELLNDASVMKVLHACGEDLEVFHNAFG-AIPV-PMVDTQIMAAFLGHGLSTGFAALVEQY 144

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
            + ++++ +       +  +                    EY   DV     +++ L   
Sbjct: 145 LNVELDKSESRTDWLARPLS----------------DKQLEYAAADVHYLLPLYEILLEK 188

Query: 179 SSKEQELWYLDQTINDRGYC 198
             +        Q    +   
Sbjct: 189 VMEAGWWQAAQQESELQASK 208


>gi|294853961|ref|ZP_06794633.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
 gi|294819616|gb|EFG36616.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
          Length = 332

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+   ++      W C
Sbjct: 134 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWAC 184


>gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
 gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
          Length = 1010

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 69  VAHNSY-FERTVL----KACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEALKLSS 120
           V HN   F+   L    K  F   +P + ++ TL+LAR+     +      + E   +S+
Sbjct: 107 VGHNINSFDMKFLYRDAKKYF-RKVPDNDYVDTLLLARAALPELSHHRLVDLAEHYGISA 165

Query: 121 Q 121
           +
Sbjct: 166 K 166


>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 1440

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 44/148 (29%), Gaps = 40/148 (27%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-----VELWDCVH--DPVMPQ 55
            +  D ET               ED  + + A              L D     DP + +
Sbjct: 427 YVVFDTETTGLNA---------REDTLIEIAAVKVKAGQIVDTYATLIDPERALDPKIVE 477

Query: 56  -------------VLKEALE-----NTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWI 94
                         LKEAL+          +VAHN+ F+   L  C     LD      I
Sbjct: 478 LTGITNEMVAGQPKLKEALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEEPVI 537

Query: 95  CTLVLARSNGLP---SALKAVGEALKLS 119
            TL LAR          LK + +   + 
Sbjct: 538 DTLALARVLYPGEKNYKLKTLTQKFSVD 565


>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
 gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens E str. JGS1987]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 25/142 (17%)

Query: 3   TLFIDFETR---SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD------------C 47
            +  D ET    S  D          +D  ++  +F     P                  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPKVNIPYKITELTSITQNM 493

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           V+       +         D  +VAHN+ F+   +K         +  +  + T+ LAR 
Sbjct: 494 VNGQPTIDEVLPKFMEFVGDSVLVAHNAAFDVGFIKKNLMDMGKTLK-NPVMDTVPLARY 552

Query: 103 NGLPS---ALKAVGEALKLSSQ 121
                    L  V + L +S +
Sbjct: 553 LYPDLKKVKLNLVAKHLGISLE 574


>gi|163845121|ref|YP_001622776.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
 gi|163675844|gb|ABY39954.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 332

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEIARITGI 133

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+   ++      W C
Sbjct: 134 TDEMVKGRTIPRDELDALIAEADIIIAHNAGFDRPFLER-LSIAFANKPWAC 184


>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
 gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
 gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens ATCC 13124]
 gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           perfringens B str. ATCC 3626]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 25/142 (17%)

Query: 3   TLFIDFETR---SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD------------C 47
            +  D ET    S  D          +D  ++  +F     P                  
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVD-SFSTFVDPKVNIPYKITELTSITQNM 493

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           V+       +         D  +VAHN+ F+   +K         +  +  + T+ LAR 
Sbjct: 494 VNGQPTIDEVLPKFMEFVGDSVLVAHNAAFDVGFIKKNLMDMGKTLK-NPVMDTVPLARY 552

Query: 103 NGLPS---ALKAVGEALKLSSQ 121
                    L  V + L +S +
Sbjct: 553 LYPDLKKVKLNLVAKHLGISLE 574


>gi|255534279|ref|YP_003094650.1| hypothetical protein FIC_00113 [Flavobacteriaceae bacterium
           3519-10]
 gi|255340475|gb|ACU06588.1| hypothetical protein FIC_00113 [Flavobacteriaceae bacterium
           3519-10]
          Length = 231

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 77/234 (32%)

Query: 2   ATLFIDFETRSP----IDLTKCGICKY-------------------------AEDVCVIL 32
             LF+D ET         L + G   +                         AE   +I 
Sbjct: 9   KVLFLDIETVPQHGNWDGLGESGQYLWDKKTKMQRKDDYTAEAFYAERGGIMAEFGKIIC 68

Query: 33  FAFGFDDHP----VELWDCVHDPVMPQVLKEALENTD---VTIVAHNSY-FERTVLKACF 84
            + G  D      ++ +    +  + +   E         V + AHN   F+   +   F
Sbjct: 69  ISVGILDKSEKLMIKSFYGDDERKLLEEFGEIFNRPKLREVILCAHNGKEFDFPWIARRF 128

Query: 85  NLD----IPIHRWI----------CTLVL-------ARSNGLPSALKAVGEALKLSSQKM 123
            ++        +             T+ L       +       +L+ +     + + K 
Sbjct: 129 LINGLQPPKPFQMFGKKPWEIPHLDTMELWKFGDYKSYI-----SLELLAHVFGIPTPKD 183

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                           +     +     +      +YC+ DV     IF+R+  
Sbjct: 184 --------------DIDGSMVASIYYIEKDLFRIVQYCEKDVLTLANIFRRMRQ 223


>gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
 gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
          Length = 315

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 67/248 (27%), Gaps = 33/248 (13%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLLEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPNHREAWRL 156
                +     L+ +   L +         + I      +       ++ +  ++     
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASIEEEKTRKENKVVLDE 186

Query: 157 FGEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVER 215
              Y          +  +             YLD         + V         +    
Sbjct: 187 TVVYE---AVKEILVRNKRNVEWLRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTEIL 241

Query: 216 TKLDQELE 223
               +E+ 
Sbjct: 242 EDDVKEIC 249


>gi|227432020|ref|ZP_03914039.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352218|gb|EEJ42425.1| DNA-directed DNA polymerase III [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 177

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 46  DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           D    P  P+V +        +  +VAHN+ F+ ++LK     +++D P +  + T+  +
Sbjct: 59  DVADAPKFPEVWQTISPFFTENKLVVAHNASFDNSILKGTLQYYDIDEPHYLLLDTVQTS 118

Query: 101 RSNGL---PSALKAVGEALKLSSQ 121
           R          L  V   L ++  
Sbjct: 119 RKLFPNFENHKLNTVAGNLGITLD 142


>gi|119470938|ref|ZP_01613522.1| putative RNase D, processing tRNA precursors [Alteromonadales
           bacterium TW-7]
 gi|119445960|gb|EAW27240.1| putative RNase D, processing tRNA precursors [Alteromonadales
           bacterium TW-7]
          Length = 376

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 49/191 (25%), Gaps = 30/191 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID E      + +  +        V L    FD   + L D + +  +     + L+
Sbjct: 24  ILAIDTE-----FMRRRTLY-----PEVALIQV-FDGEHLALIDPLAELSLFD-FWQVLK 71

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  V  V H+   +  V +              T    +  G  + +             
Sbjct: 72  DPAVLKVLHSPSEDIEVFQKYAGFV--PAPLFDTQFALQLLGEGNCM------------- 116

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
              G  L+ +   G   +    R     R       +Y   D       F+ +    +  
Sbjct: 117 ---GFALMVKTLLGIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFELIIDRINNA 173

Query: 183 QELWYLDQTIN 193
                +     
Sbjct: 174 DLFEIVLDESE 184


>gi|70726458|ref|YP_253372.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
 gi|123660231|sp|Q4L6F9|DING_STAHJ RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|68447182|dbj|BAE04766.1| probable ATP-dependent DNA helicase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 900

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 16/112 (14%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL---ARSNGL 105
            + Q + + L++     VAHN  F+   +K  F   N+D    + + TL L   A     
Sbjct: 73  EIAQEIYKQLKD--RVFVAHNVDFDLNFIKKAFQNCNIDFKPKKVLDTLELFKIAYPTDK 130

Query: 106 PSALKAVGEALKLSSQKMEEGKE--------LIARFCKGETHECLYDRNKPN 149
              L  + EA  +         E        +I  F K E       +    
Sbjct: 131 SYQLSELAEAHDIPLDNAHRADEDATTTALLMIKAFQKFEQLPIDTLKQLYY 182


>gi|189345564|ref|YP_001942093.1| cyclic nucleotide-binding protein [Chlorobium limicola DSM 245]
 gi|189339711|gb|ACD89114.1| cyclic nucleotide-binding protein [Chlorobium limicola DSM 245]
          Length = 793

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 50/211 (23%), Gaps = 62/211 (29%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH--PVELWDCVHDPVMPQVLKEAL 61
           L +D ET         G         +I+ +   +     V       +  + + + + +
Sbjct: 157 LQLDIETYYKP----IGRNDERFSDEIIIVSLSDNRGWEEVLHSKNSDEKTLLENVIKTI 212

Query: 62  ENTDVTIV-AHNS-YFERTVLKA---CFNL------------------------------ 86
            + D  ++  HN   F+   L+       +                              
Sbjct: 213 ASKDPDVIEGHNIFSFDLPYLQKRCAFHGIQFSIGRDGMLPKTYPSSIRFSERSIDFTFF 272

Query: 87  DIPIHRWICT--LVLARSNG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHE 140
           DIP    + T  LV +            LKAV +                  F   +   
Sbjct: 273 DIPGRHVVDTLFLVQSYDISKRSLQSYGLKAVAKHFG---------------FASPDRTY 317

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
             Y                Y   DV  T  +
Sbjct: 318 IDYKDIASTWDNDHEKLLAYALDDVRETGAL 348


>gi|330822675|ref|YP_004385978.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
 gi|329308047|gb|AEB82462.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans K601]
          Length = 209

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 69  VAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLS 119
           VAHN+ F+    +       LD   H + CT++L+R         +L  + + L L 
Sbjct: 88  VAHNAAFDSRFWQSELRHAGLD-APHPFACTVLLSRRIYPDAPSHSLGRLTDHLGLP 143


>gi|327194608|gb|EGE61458.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli
           CNPAF512]
          Length = 224

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 25/140 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGIC-KYAEDVCVI---------------LFAFGFDD-HPVEL 44
            T+ IDFET +    + C +   + ++  V                          P  +
Sbjct: 30  KTIAIDFETANEQRGSACSVGLAWIDEGRVTRVEERLIRPRDMRFSGMNIAIHGIRPEHV 89

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLAR 101
            D    P +     E +  +  T++AHN+ F+ +V +A  +L     P   ++C+L +A+
Sbjct: 90  EDAPEFPEVMDEFHEDI--SGATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMAQ 147

Query: 102 SNGLP---SALKAVGEALKL 118
                     L  + E L L
Sbjct: 148 RIWPHFLSHRLNLIAEHLGL 167


>gi|301026544|ref|ZP_07189972.1| ribonuclease D [Escherichia coli MS 69-1]
 gi|300395475|gb|EFJ79013.1| ribonuclease D [Escherichia coli MS 69-1]
          Length = 371

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPISWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|319760755|ref|YP_004124692.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
 gi|317115316|gb|ADU97804.1| DNA-directed DNA polymerase [Alicycliphilus denitrificans BC]
          Length = 209

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 69  VAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLS 119
           VAHN+ F+    +       LD   H + CT++L+R         +L  + + L L 
Sbjct: 88  VAHNAAFDSRFWQSELRHAGLD-APHPFACTVLLSRRIYPDAPSHSLGRLTDHLGLP 143


>gi|167752075|ref|ZP_02424202.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216]
 gi|167660316|gb|EDS04446.1| hypothetical protein ALIPUT_00317 [Alistipes putredinis DSM 17216]
          Length = 164

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 25/143 (17%)

Query: 1   MA-TLFIDFET--RSPIDLTKCGICKYAEDVCVI-----LF--------AFGFDDHPVEL 44
           M   + IDFET  R    +   G+ +  E+  +      L         ++    H +  
Sbjct: 1   MKDFVAIDFETANRERTSICSVGLVR-VENGDIREKIYRLIRPYPDYYSSWNTRIHGLTY 59

Query: 45  WDCVHDPVMPQVLKEA-LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
            D  H    P+V  +   E   + +VAHNS F+   LK     + +  P +R+ CT   +
Sbjct: 60  RDTAHAAPFPEVWADISPELAGLPLVAHNSPFDEGCLKAAFRQYGMAYPDYRFFCTCRAS 119

Query: 101 RSNG----LPSALKAVGEALKLS 119
           R           L+ V       
Sbjct: 120 RRVFGRELPNHQLQTVAARCGFD 142


>gi|170095531|ref|XP_001878986.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646290|gb|EDR10536.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 250

 Score = 43.6 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 37/188 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVELWDCV--------HDPVM 53
           TL +D E    IDL             + L          V L D          H    
Sbjct: 34  TLAVDLE---GIDL--------CRHGKISLVQIMSSVSEVVWLVDVTTLGSQAFDHVDPY 82

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + L+  LE+T +  V ++   +   L   + +++         +L     +  +L+   
Sbjct: 83  GRTLRMILEDTGIKKVFYDVRNDADALYNLYGVNLM--GVYDLQLLE--LAVRHSLRRQT 138

Query: 114 EALKLSSQKMEEG----------KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
             L   S+ ++            KE  +R  K E                 R+   YC  
Sbjct: 139 RLLNGLSKSIKSYLTPPVEWEPVKEAGSRLFKPE--FGGSYSVFEERPLDPRIVA-YCAQ 195

Query: 164 DVTVTREI 171
           DVT+   +
Sbjct: 196 DVTLLFAL 203


>gi|314937698|ref|ZP_07845022.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a04]
 gi|314943353|ref|ZP_07850126.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133C]
 gi|314953543|ref|ZP_07856454.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133A]
 gi|314994073|ref|ZP_07859394.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133B]
 gi|314996850|ref|ZP_07861856.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a01]
 gi|313589017|gb|EFR67862.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a01]
 gi|313591508|gb|EFR70353.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133B]
 gi|313594422|gb|EFR73267.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133A]
 gi|313597934|gb|EFR76779.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133C]
 gi|313642944|gb|EFS07524.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0133a04]
          Length = 194

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 33/148 (22%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET      S   L    +   +  ++   +             W        
Sbjct: 18  MNFVAMDFETANHQPYSACSLALVMVKNSQIVDEFYTL-----IQPETPFFWRNVQIHGI 72

Query: 46  ---DCVHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
              D  + P  P+V   ++   +  +  +VAHN+ F+  VL      ++L+ P +  +CT
Sbjct: 73  HQEDVRNAPKFPEVWQTIQPYFQ-KNRLVVAHNAAFDTKVLAGCLDYYHLEQPNYLSLCT 131

Query: 97  LVLARSN---GLPSALKAVGEALKLSSQ 121
           +  +R          L  V E L +   
Sbjct: 132 VKSSRRLFPEFPNHRLNTVCENLNIQLD 159


>gi|296119553|ref|ZP_06838111.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967436|gb|EFG80703.1| putative DNA polymerase III epsilon subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 223

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/189 (9%), Positives = 43/189 (22%), Gaps = 33/189 (17%)

Query: 2   ATLFIDFETRSPID-----------------------LTKCGICKYAEDVCVILFAFGFD 38
             L  D ET S                          L   G+        +        
Sbjct: 7   KMLSFDLETTSVNTREARIVTSAVLRIAGPDVVKKETLADPGVEIPEAAAKIHGIT---- 62

Query: 39  DHPVELWDCVHDPVMPQVLKEALE--NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                     HD V+ + +       +   T++ +N+ ++ +VL+               
Sbjct: 63  TEQARAEGRPHDEVLQETVNAIKAAWDEGFTLIVYNAPYDLSVLRNLTGDFTVTGPVFDP 122

Query: 97  LVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            ++ R           L  + +  ++      E         +    +      +    +
Sbjct: 123 YLIDRVKDRYRKGKRTLGDLCKEYRVELGNAHEATADALAAARIAWKQVNQRWPELKEMD 182

Query: 153 AWRLFGEYC 161
           +  L     
Sbjct: 183 SDELMEFQA 191


>gi|284009180|emb|CBA76234.1| DNA polymerase III subunit epsilon [Arsenophonus nasoniae]
          Length = 254

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 49/170 (28%)

Query: 2   ATLFIDFETRSPI---------DLTKCGI-------------CKYAEDVCVILFAFGFDD 39
             + +D ET             ++ + G                Y +   ++       D
Sbjct: 7   RQIVLDTETTGMNKLGIHYEGHNIIEIGAVEVINRRLTGRHFHVYIKPARLV-------D 59

Query: 40  HPVELWDCVHDP---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLD 87
                   + D           +     + +      +V HN+ F+   +   F   N D
Sbjct: 60  PEAFEVHGISDEFLQDKPTFAQIADEFLDFIR--GAELVIHNAPFDIGFMDYEFSKLNRD 117

Query: 88  IPIH----RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           IP      +   +LVLAR         L A+ +   + + K      L+ 
Sbjct: 118 IPPTANFCQITDSLVLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLD 167


>gi|262342249|gb|ACY54635.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 40/143 (27%), Gaps = 11/143 (7%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQWKLKAFETGEDLYVTTYARSFNV 419
              R   + S  + +V ADLAGIE R+L+      +  +        D++     +    
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFLARYDDGRYADILLNGDIHQVNADKI--- 66

Query: 420 APAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAE 479
                    R + K +  A  Y  G +           +        +   A  E  D  
Sbjct: 67  ------GISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGL 120

Query: 480 NFCRWMQENHPEHAIEDLFIGTA 502
           +      +   E        G  
Sbjct: 121 DKLLEAIKKASERGFIKALDGRK 143


>gi|262212121|gb|ACY35677.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212127|gb|ACY35680.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +  ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMAGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           + +      +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEIRQAYIEATDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|257879256|ref|ZP_05658909.1| exonuclease [Enterococcus faecium 1,230,933]
 gi|257881926|ref|ZP_05661579.1| exonuclease [Enterococcus faecium 1,231,502]
 gi|257886420|ref|ZP_05666073.1| exonuclease [Enterococcus faecium 1,231,501]
 gi|257892035|ref|ZP_05671688.1| exonuclease [Enterococcus faecium 1,231,410]
 gi|257894890|ref|ZP_05674543.1| exonuclease [Enterococcus faecium 1,231,408]
 gi|258617178|ref|ZP_05714948.1| exonuclease [Enterococcus faecium DO]
 gi|260558702|ref|ZP_05830891.1| exonuclease [Enterococcus faecium C68]
 gi|261208809|ref|ZP_05923246.1| exonuclease [Enterococcus faecium TC 6]
 gi|289567393|ref|ZP_06447761.1| exonuclease [Enterococcus faecium D344SRF]
 gi|293554053|ref|ZP_06674651.1| exonuclease [Enterococcus faecium E1039]
 gi|293559453|ref|ZP_06675990.1| exonuclease [Enterococcus faecium E1162]
 gi|293567360|ref|ZP_06678710.1| exonuclease [Enterococcus faecium E1071]
 gi|293571424|ref|ZP_06682452.1| exonuclease [Enterococcus faecium E980]
 gi|294616820|ref|ZP_06696561.1| exonuclease [Enterococcus faecium E1636]
 gi|294620071|ref|ZP_06699426.1| exonuclease [Enterococcus faecium E1679]
 gi|294622945|ref|ZP_06701839.1| exonuclease [Enterococcus faecium U0317]
 gi|257813484|gb|EEV42242.1| exonuclease [Enterococcus faecium 1,230,933]
 gi|257817584|gb|EEV44912.1| exonuclease [Enterococcus faecium 1,231,502]
 gi|257822276|gb|EEV49406.1| exonuclease [Enterococcus faecium 1,231,501]
 gi|257828395|gb|EEV55021.1| exonuclease [Enterococcus faecium 1,231,410]
 gi|257831269|gb|EEV57876.1| exonuclease [Enterococcus faecium 1,231,408]
 gi|260075161|gb|EEW63474.1| exonuclease [Enterococcus faecium C68]
 gi|260077311|gb|EEW65031.1| exonuclease [Enterococcus faecium TC 6]
 gi|289160818|gb|EFD08750.1| exonuclease [Enterococcus faecium D344SRF]
 gi|291589962|gb|EFF21760.1| exonuclease [Enterococcus faecium E1071]
 gi|291590326|gb|EFF22094.1| exonuclease [Enterococcus faecium E1636]
 gi|291593687|gb|EFF25206.1| exonuclease [Enterococcus faecium E1679]
 gi|291597644|gb|EFF28801.1| exonuclease [Enterococcus faecium U0317]
 gi|291601744|gb|EFF31998.1| exonuclease [Enterococcus faecium E1039]
 gi|291606515|gb|EFF35912.1| exonuclease [Enterococcus faecium E1162]
 gi|291608496|gb|EFF37790.1| exonuclease [Enterococcus faecium E980]
          Length = 177

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 33/148 (22%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET      S   L    +   +  ++   +             W        
Sbjct: 1   MNFVAMDFETANHQPYSACSLALVMVKNSQIVDEFYTL-----IQPETPFFWRNVQIHGI 55

Query: 46  ---DCVHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
              D  + P  P+V   ++   +  +  +VAHN+ F+  VL      ++L+ P +  +CT
Sbjct: 56  HQEDVRNAPKFPEVWQTIQPYFQ-KNRLVVAHNAAFDTKVLAGCLDYYHLEQPNYLSLCT 114

Query: 97  LVLARSN---GLPSALKAVGEALKLSSQ 121
           +  +R          L  V E L +   
Sbjct: 115 VKSSRRLFPEFPNHRLNTVCENLNIQLD 142


>gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
 gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
          Length = 1445

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 26/143 (18%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDHPVE------LWDCVHD-- 50
            +  D ET         +T+ G  K      +       +           L    +D  
Sbjct: 408 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDRLQMFVNPGKSISSRITNLTSITNDMV 467

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLVLAR 101
                   +   + E  ++    +VAHN+ F+   L      +      +  I +L LAR
Sbjct: 468 RNEPTIDALLPRIIEFFDD--CILVAHNANFDIGFLNENLRRNNMPEITNPIIDSLALAR 525

Query: 102 SNGLP---SALKAVGEALKLSSQ 121
           +   P     L  V  + +++  
Sbjct: 526 AILKPMKSYRLGNVCRSYRVNYD 548


>gi|69245046|ref|ZP_00603204.1| Exonuclease [Enterococcus faecium DO]
 gi|314947594|ref|ZP_07851004.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0082]
 gi|68196047|gb|EAN10479.1| Exonuclease [Enterococcus faecium DO]
 gi|313645987|gb|EFS10567.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Enterococcus faecium TX0082]
          Length = 201

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 33/148 (22%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET      S   L    +   +  ++   +             W        
Sbjct: 25  MNFVAMDFETANHQPYSACSLALVMVKNSQIVDEFYTL-----IQPETPFFWRNVQIHGI 79

Query: 46  ---DCVHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
              D  + P  P+V   ++   +  +  +VAHN+ F+  VL      ++L+ P +  +CT
Sbjct: 80  HQEDVRNAPKFPEVWQTIQPYFQ-KNRLVVAHNAAFDTKVLAGCLDYYHLEQPNYLSLCT 138

Query: 97  LVLARSN---GLPSALKAVGEALKLSSQ 121
           +  +R          L  V E L +   
Sbjct: 139 VKSSRRLFPEFPNHRLNTVCENLNIQLD 166


>gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 462

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 38/143 (26%)

Query: 5   FIDFETRSP----IDLTKCGICKYAEDV-------------------CVILFAFGFDDHP 41
           F+D ET         +T+ GI +  ED                     +   +       
Sbjct: 12  FVDLETTGATAVIDRITEVGIVEVDEDGVRHWSSLVNPHRHIPEFIEGLTGIS------N 65

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV 98
             + D      +   + + LE      +AHN+ F+   LK  F    +D      +CT+ 
Sbjct: 66  AMVADAPGFDELAAEIHQRLE--GRIFLAHNARFDHGFLKNEFKRVGIDFRPT-VLCTVK 122

Query: 99  LARSNGLP---SALKAVGEALKL 118
           L+R          L  + E  +L
Sbjct: 123 LSRKLYPEFAKHNLDTLAERHQL 145


>gi|331266715|ref|YP_004326345.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5]
 gi|326683387|emb|CBZ01005.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5]
          Length = 830

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 83/284 (29%), Gaps = 40/284 (14%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51
             + +D E   T S   + + GI    E+  +I   +  D +P E  D            
Sbjct: 8   RYVVVDLEATSTGSKAKIIQVGI-VVIENGDIID-QYATDVNPHEPLDSHIKELTGLTDQ 65

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                     +   + E +++     VAHN  F+  +L         ++   R   T+ L
Sbjct: 66  RLAAAPEFSQVAGKIFELVKDG--IFVAHNVQFDANLLAEFLFFEGYELRTPRV-DTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQKMEE-------GKELIARFCKGETHECLYDRNKPN 149
           A+          L  + + L +  +             EL+    +              
Sbjct: 123 AQVLYPQFEKYNLGILCQELGIELEHAHTALSDAQATAELLLYMRQKLFELPKGLLESLL 182

Query: 150 HREAWRLFGEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                 L+  Y    +    + +     P   +   L+   ++       +    A  ++
Sbjct: 183 KLADNLLYESYLVIEEAYQQQSL--LSSPDLMELHGLFLRKESRALVPRKLSKDFAKNIS 240

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
            +   ER +  +  E + + L        + +T L    G  L 
Sbjct: 241 LLGLEERPQQLEFAEKVEHLLEEDQTSFIQAQTGLGKTYGYLLP 284


>gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
 gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Croceibacter atlanticus HTCC2559]
          Length = 457

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 43/146 (29%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV--ELWDCVHDPVMPQVL----- 57
           +D ET            KY E+  +   A + FD H V  ++   V+     Q       
Sbjct: 5   LDIETTG---------GKYNEEG-ITEIAIYKFDGHEVVDQVISLVNPERPIQPFVVGLT 54

Query: 58  -----------------KEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
                            K  LE   D  +VAHN+ F+  +L+        +       C+
Sbjct: 55  GINNDMLRNAPKFYEIAKRILEITQDCILVAHNAKFDYRILRTEFRRLGYEYERETL-CS 113

Query: 97  LVLARSNGLPS---ALKAVGEALKLS 119
           + L++         +L  + +AL + 
Sbjct: 114 VELSKKLLPGHASYSLGKLTKALGIP 139


>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 10/123 (8%)

Query: 63  NTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           + D  +VAHN+ F+   L  CF    L+   +  I TL ++R+    +    +    KL 
Sbjct: 506 DKDDILVAHNAKFDLGFLDTCFERLGLENKNNASIDTLFVSRAENKEAKRHGLSNLAKLY 565

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY-CKGDVTVTREIFKRLEPL 178
             ++ +    I         +   +       + + L  EY  + D  +  E+  +    
Sbjct: 566 KVRLVQHHRAI------YDTKATAEIFVKMLDQLYELGIEYHNEIDEKIDLELAHKRSRT 619

Query: 179 SSK 181
              
Sbjct: 620 FPC 622


>gi|262212333|gb|ACY35783.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFILTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGRKII 145


>gi|87119404|ref|ZP_01075302.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Marinomonas sp. MED121]
 gi|86165795|gb|EAQ67062.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Marinomonas sp. MED121]
          Length = 235

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 39/154 (25%), Gaps = 42/154 (27%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFA 34
           M  + +D ET                       LTK     Y         E   V   +
Sbjct: 2   MRQIILDTETTGIDPKQGHRIIEIGCVEMLDRKLTKNHFHVYINPDRQVEEEAFQVHGIS 61

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLD--I 88
                    L D      + Q     ++     +V HN+ F+            N     
Sbjct: 62  ------DEFLADKPRFHQVAQDFLNYIQ--GAELVIHNAPFDVGFIDHEFAKLGNFPKVA 113

Query: 89  PIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
            I     TL  ARS        L A+ +   + +
Sbjct: 114 DICSVFDTLAFARSKHPGQKNNLDALCKRYGIDN 147


>gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Enterococcus faecalis TX1467]
          Length = 240

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
 gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
          Length = 175

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88]
 gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1427

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 57/193 (29%), Gaps = 38/193 (19%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVE--------------L 44
            +  D ET    +    + + G  K  E   V  ++   +   +               +
Sbjct: 413 YVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMV 472

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLAR 101
            D      +     + +E++   +VAHN+ F+ + +K     F +    +  + T+ L +
Sbjct: 473 KDAPKIEEVLPKFIDFIEDS--ILVAHNANFDVSFIKKNCKDFGIHFN-NPILDTIPLCK 529

Query: 102 SNGLP---SALKAVGEALKLS--------SQKMEEGKELIARFCKGETHECLYDRNK--- 147
                     L  V + L +               G  L+  F   +  E +        
Sbjct: 530 FLYPELKRYKLNVVAKHLGIPLLNHHRAVEDAKTTGDILLKAFEDLKDKEIMNLNMLNEE 589

Query: 148 PNHREAWRLFGEY 160
               +  +    Y
Sbjct: 590 YFKNQDIKKSPTY 602


>gi|59801359|ref|YP_208071.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA 1090]
 gi|240080918|ref|ZP_04725461.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA19]
 gi|268597034|ref|ZP_06131201.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|59718254|gb|AAW89659.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA 1090]
 gi|268550822|gb|EEZ45841.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 244

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 49/181 (27%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIP----- 89
              +      +      + + + + L      ++ HN+ F+   L   F  + +P     
Sbjct: 64  QVLEEK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRVGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 P 148
            
Sbjct: 178 D 178


>gi|38233670|ref|NP_939437.1| DNA polymerase III subunit epsilon [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199931|emb|CAE49599.1| Putative DNA polymerase [Corynebacterium diphtheriae]
          Length = 234

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 47/210 (22%), Gaps = 42/210 (20%)

Query: 3   TLFIDFETRSPID-----------------------LTKCGICKYAEDVCVILFA--FGF 37
            L  D ET S                          L   G+        V   +  +  
Sbjct: 16  VLSFDLETTSANPFEARIVTSALVRIDSSGAHPVELLADPGVEIPEAASKVHGISTEYAR 75

Query: 38  DDHPVELWDCVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI 94
           +          H+         +  A E    T+V +N+ ++ TVL+      +      
Sbjct: 76  EHGE------PHEAVLKRTVDEIYAAWE-EGFTLVVYNAPYDLTVLRQLTGDFVVKGPVY 128

Query: 95  CTLVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              ++ R           L  +     +      E         +    +          
Sbjct: 129 DPYLIDRIMDRFRKGKRTLTDLCSVYGVRMDNAHEATSDALAAARIAWMQAKKRFKDDLA 188

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
             +     EY         E+ K ++    
Sbjct: 189 AYSHDELMEYQAVQY---YELQKDMKKYLD 215


>gi|319762901|ref|YP_004126838.1| DNA polymerase iii, epsilon subunit [Alicycliphilus denitrificans
           BC]
 gi|330824980|ref|YP_004388283.1| DNA polymerase III subunit epsilon [Alicycliphilus denitrificans
           K601]
 gi|317117462|gb|ADU99950.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
           BC]
 gi|329310352|gb|AEB84767.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
           K601]
          Length = 242

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 32/159 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK--- 58
             + +D ET     L+     +  E  CV L +     + + L+           LK   
Sbjct: 3   RQIVLDTETTG---LSAENGDRIIELGCVELLSRKLTGNNLHLYLNPERDSHEDALKVHG 59

Query: 59  ---EALENT---------------DVTIVAHNSYFERTVLKACFNL-DIPI-----HRWI 94
              E L +                   ++ HN+ F+   L     L  +P         I
Sbjct: 60  ISNEFLRDKPKFAEVVHDILEYLRGAELIIHNASFDVGFLDKELELAGLPPLAAHVDGVI 119

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL +A+        +L A+ + L++ +        L+ 
Sbjct: 120 DTLAMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLD 158


>gi|118577408|ref|YP_899648.1| exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
           DSM 2379]
 gi|118504913|gb|ABL01395.1| Exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
           DSM 2379]
          Length = 304

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 22/115 (19%)

Query: 4   LFIDFETR----SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV------- 52
           L ID ET     S   + + GI  +  D      +   D +      C            
Sbjct: 48  LCIDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRIVDTYSGFEDPCRPLDPEVTAVTG 107

Query: 53  MPQVLK--EALENTDVTIV--------AHNSYFERTVLKACFNLDIPIHRWICTL 97
           +   +   ++L++  V  +         HN  F+R+ L+  F  +     + CT+
Sbjct: 108 ITDDMLAGQSLDDAAVGKIVSQASLCFCHNCKFDRSFLERRFP-EFEKLPFACTM 161


>gi|262394860|ref|YP_003286714.1| ribonuclease D [Vibrio sp. Ex25]
 gi|262338454|gb|ACY52249.1| ribonuclease D [Vibrio sp. Ex25]
          Length = 388

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 25/158 (15%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD + + L D      M       L++T V  V H    +  V +  F         + T
Sbjct: 63  FDGNRLSLIDPTELTDMT-PFVALLKDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 119

Query: 97  LVLARSNGLPSALKAVG---EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            ++A   G   +        E L +   K E   + +AR                     
Sbjct: 120 QLMAAFLGHGLSTGFASLVEEYLGVELDKSESRTDWMARPLT------------------ 161

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
            +   +Y   DV     ++++L    ++      + Q 
Sbjct: 162 -QKQLDYAAADVHYLLPLYEKLLDKVTQAGWWEAVQQE 198


>gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 75/266 (28%), Gaps = 55/266 (20%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDCV 48
            ID  T   +DL   G     E +  I       D  V                 + +  
Sbjct: 421 SIDT-TYCVLDLETTGFSPVTEKITEIGI-MKIKDGKVIDTFSTFVNPEKPIPLRVVEVT 478

Query: 49  H-------DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICT 96
           +       +    + +   + +   D  +VAHN+ F+   LK        D     ++ T
Sbjct: 479 NITDDMVRNAETIEQVFPKMLDFIKDSVLVAHNAEFDVGFLKHNAKILGCDFDFT-YVDT 537

Query: 97  LVLARSNGL---PSALKAVGEALKLSSQKMEE---------------GKELIARFCKGET 138
           L LA+          L  + + L +  +                    ++L  R  +   
Sbjct: 538 LSLAQEVFPDFKTYKLGRIAKNLGIKVEVAHRALDDVATTVKVFNVMLEKLKERGAENLK 597

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC 198
              +Y R++   +E ++    Y      +             K     +LD         
Sbjct: 598 DIDIYGRDEAAKKEEYKKLKTYHA----IILAKDYVGLKNLYKLVSYSHLDYFYKKP--R 651

Query: 199 VDVALAHTLNQIVDVERTKLDQELES 224
           +  +L    ++ + +     + EL  
Sbjct: 652 ILKSLYKKYSEGLILGSACSEGELYQ 677


>gi|295095587|emb|CBK84677.1| ribonuclease D [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 384

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 51/200 (25%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    +D   V L D          ++
Sbjct: 34  IALDTEFVRTRTYY---------------PQLGLIQM-YDGKHVSLID-PLGITDWAPMR 76

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +T VT   H    +  V    F +       I T +LA  +G P +        + 
Sbjct: 77  ELLLDTAVTKYLHAGSEDLEVFLNTFGI--MPQPLIDTQILAAFSGRPLSWGFAAMVEEY 134

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  T                    EY   DV     I  +L   
Sbjct: 135 TGLTLDKSESRTDWLARPLT----------------ARQLEYAAADVFYLLPIAGQLMKE 178

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 179 AEASGWLSAALDECRMTQQR 198


>gi|269836548|ref|YP_003318776.1| DNA polymerase B region [Sphaerobacter thermophilus DSM 20745]
 gi|269785811|gb|ACZ37954.1| DNA polymerase B region [Sphaerobacter thermophilus DSM 20745]
          Length = 730

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 21/97 (21%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DP-----VMPQVLKE 59
           +D ET         G    +    +++ A   +    E+ D            + + +++
Sbjct: 134 VDIETT--------GFDARSNRAEILVVALATNRGHREVLDVADLGEAGVLRTLTERIQQ 185

Query: 60  ALENTDVTIVAHNS-YFERTVL---KACFNLDIPIHR 92
              + DV    HN   F+   L        + +   R
Sbjct: 186 I--DPDVIE-GHNLFNFDLPFLMERARQHGVTLAWGR 219


>gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1449

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 69  VAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQ 121
           VAHN+ F+   +K       N+D      I TL +AR          L  + + L L+ +
Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYK-CSVIDTLQMARDLFPDLKKYGLGDLNKTLGLALE 562

Query: 122 K 122
           K
Sbjct: 563 K 563


>gi|156093870|ref|XP_001612973.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
           SaI-1]
 gi|148801847|gb|EDL43246.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
          Length = 428

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 52/171 (30%), Gaps = 27/171 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV---MPQVL 57
           +  + +D E             K   +  V +      D  V L+D           + L
Sbjct: 97  INCIGLDVE-----------GYKIGRNGTVSIIQVCTQD--VYLFDLYKCDNSYLFVKCL 143

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           KE LE+  V  + H+   + ++L   +   I ++R   T V          LK   + L 
Sbjct: 144 KELLEDRRVIKITHDCREDCSILFNQY--SICLNRTFDTQVA-----FNLLLKETKKDLY 196

Query: 118 LSSQKMEEGKELI---ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
             S      K L+              L  +       A +   +Y   DV
Sbjct: 197 QISYDDLLYKCLLLNNKHKIYFHKMISLDQKIYLKRPIA-KELIQYAIQDV 246


>gi|116618623|ref|YP_818994.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097470|gb|ABJ62621.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 177

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 46  DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           D    P  P+V +        +  +VAHN+ F+ ++LK     +++D P +  + T+  +
Sbjct: 59  DVADAPKFPEVWQTISPFFTENKLVVAHNASFDNSILKGTLQYYDIDEPHYLLLDTVQTS 118

Query: 101 RSNGL---PSALKAVGEALKLSSQ 121
           R          L  V   L ++  
Sbjct: 119 RKLFPNFENHKLNTVAGNLGITLD 142


>gi|260772249|ref|ZP_05881165.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
 gi|260611388|gb|EEX36591.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
          Length = 246

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 11/100 (11%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRW 93
              L D      + Q   + +      +VAHN+ F+   +   F              + 
Sbjct: 75  DAFLVDKPQYKEVHQEFLDFI--KGAELVAHNASFDVGFMDYEFAKVNPAIGKTEQYCKI 132

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +A+         L  + +   + +        L+ 
Sbjct: 133 TDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLD 172


>gi|333003546|gb|EGK23086.1| exonuclease family protein [Shigella flexneri VA-6]
 gi|333004693|gb|EGK24216.1| exonuclease family protein [Shigella flexneri K-272]
 gi|333018414|gb|EGK37712.1| exonuclease family protein [Shigella flexneri K-227]
          Length = 220

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSLLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGLKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 623

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 26/136 (19%)

Query: 4   LFIDFETRS----PIDLTKCGICKYAEDVCVIL-FAFGFDDHPV---ELWDCV------- 48
           + +D ET         +T+ G  K      V+  FA   D       ++           
Sbjct: 60  VVVDLETTGGSADDDRITEIGAVK-IRGGEVLGEFATLVDPGRAIPPQIVALTGITTAML 118

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN 103
           +D    + +  A         +VAHN+ F+   L+       L  P    +CT+V+AR  
Sbjct: 119 YDAPRIEEVLPAFAEFARGTVLVAHNARFDMGFLRKSAARMRLPWPFSTSLCTVVMARRI 178

Query: 104 -----GLPSALKAVGE 114
                     L A+ E
Sbjct: 179 LSRQEAPTVKLSALAE 194


>gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
 gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
          Length = 333

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 44/148 (29%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAF----GFDDHPVELWDCVHDPVMPQVLK--- 58
           +D ET              A D  ++  A        D     +  V+    P  +    
Sbjct: 22  VDVETTGL-----------ARDDRIVSAAVYRLDALGDVEDHWYTLVNPERDPGPVWIHG 70

Query: 59  ---EALE----------------NTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICT 96
              EALE                +  V  VAHN+ F+ ++L   +    +  P+ + +CT
Sbjct: 71  LTSEALEGAPLFPEVAAQLSERLDGRVL-VAHNAAFDWSMLAREYARAAITAPVRQRLCT 129

Query: 97  LVLARSNGLP---SALKAVGEALKLSSQ 121
           + L++   LP     L+++     +  Q
Sbjct: 130 IALSKELRLPLPNHKLESLAAHFGVVQQ 157


>gi|302869008|ref|YP_003837645.1| DNA polymerase III subunit epsilon [Micromonospora aurantiaca ATCC
           27029]
 gi|302571867|gb|ADL48069.1| DNA polymerase III, epsilon subunit [Micromonospora aurantiaca ATCC
           27029]
          Length = 584

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 28/147 (19%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH--------------PVELW 45
           + +D ET         +T+ G  K      + + A   +                   L 
Sbjct: 33  VVVDLETTGGAPDGGGITEIGAVKVRGGEELGVLATLVNPGVPIPPFITVLTGITQAMLL 92

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA-R 101
                  +     E + +    +VAHN+ ++   LKA         P  R + T  LA R
Sbjct: 93  PAPPIEQVLPSFLEFVSDA--VLVAHNAPYDVGFLKAACAKHGYRWPNPRVLDTAALARR 150

Query: 102 SNG----LPSALKAVGEALKLSSQKME 124
                      L  +    + ++Q   
Sbjct: 151 VLTRDEVPNRKLGTLAAYFRTATQPTH 177


>gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26]
 gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55]
 gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34]
 gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79]
 gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
 gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
          Length = 1432

 Score = 43.6 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 28/145 (19%)

Query: 2   ATLF-----IDFETRS---PIDLTKCGICKYAEDVCVIL-----------FAFGFDDHPV 42
             L       D ET       D          E+  ++             ++   +   
Sbjct: 412 KELSQTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDRFSELINPEKDISYKIQELTG 471

Query: 43  ELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
              + + D    + +         D  +VAHN+ F+   +        L     +   TL
Sbjct: 472 ITNELIKDKPTIEEILPKFMEFVGDSVLVAHNAEFDTGFISQKCREQGLLYNNKKV-DTL 530

Query: 98  VLARSNGLP---SALKAVGEALKLS 119
           +LAR          L  V + L + 
Sbjct: 531 MLARVMLPNLKRHRLNVVAKELGIP 555


>gi|307325177|ref|ZP_07604381.1| 3'-5' exonuclease [Streptomyces violaceusniger Tu 4113]
 gi|306889323|gb|EFN20305.1| 3'-5' exonuclease [Streptomyces violaceusniger Tu 4113]
          Length = 425

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 27/180 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D  +    +Y +   ++            +            L  A+ + +   V H +
Sbjct: 64  VDAERASGYRYGQRAYLVQLRRA-GAGTALIDPVGCPD--LSGLGAAIADAE--WVLHAA 118

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIAR 132
             +   L+   ++ +   R   T +  R  G     L A+ E   +    +E+G   +  
Sbjct: 119 TQDLPCLR---DIGMIPARIFDTELAGRLAGFARVGLGAMVE--NILGYALEKGHSAVDW 173

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
             +                E W     Y   DV +  ++   LE    ++ +L +  Q  
Sbjct: 174 STRPL-------------PEPW---LHYAALDVELLVDLRDALEEELERQSKLEWAHQEF 217


>gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87]
 gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87]
          Length = 457

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 65/214 (30%), Gaps = 55/214 (25%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV--ELWDCVHDPVMPQVLK---- 58
           +D ET            KY E+  +   A + FD   V  +    ++     Q       
Sbjct: 5   LDIETTG---------GKYNEEG-ITEIAIYKFDGEKVVDQFISLINPERPIQPFVVGLT 54

Query: 59  ----EALENT---------------DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
               E L N                D  IVAHN+ F+  +L+        +       CT
Sbjct: 55  GINNEMLRNAPKFYEVAKRIVEITTDCIIVAHNAKFDYRILRTEFKRLGFEFQRKSL-CT 113

Query: 97  LVLARSNG---LPSALKAVGEALKL----------SSQKMEEGKELIARFCKGETHECLY 143
           + L++         +L  +  AL +           +Q   +  +++      +      
Sbjct: 114 VELSKKLIPDMPSYSLGKLVRALGIPLSDRHRANGDAQATVKLFKMLLAKDTKKDILKDN 173

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            R +P  +   +L   Y   D+     I+   + 
Sbjct: 174 VRQEPKRQLDSKLV--YILDDLPAITGIYYLHDE 205


>gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 1433

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 28/144 (19%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVIL---------------FAFGFDDHPVE 43
            +  D ET    +    + + G     E+  V+                     +    +
Sbjct: 385 YVSFDLETTGLSNYYDHIIEFG-GVLIENGRVVKKMQTFIKAPVPVRPFIQELTNITDAD 443

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           L +          + E L +    +VAHN+ F+   ++        +   +  I TL L+
Sbjct: 444 LVNAPSIEEAMDEILEFLGD--HVLVAHNAQFDIDFIQETLRRIGKEPIQNAVIDTLDLS 501

Query: 101 RSN---GLPSALKAVGEALKLSSQ 121
           R+         L ++   +++   
Sbjct: 502 RALFDNRRSYRLGSIARFMRIGYD 525


>gi|148909381|gb|ABR17789.1| unknown [Picea sitchensis]
          Length = 175

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP-QVLKEAL 61
            +  D E    +DL + G         + +    F+D  V L D V    +  Q  K AL
Sbjct: 36  VIGFDCE---GVDLARYG--------RLCIMQLAFEDA-VYLVDAVEGGHLLMQACKPAL 83

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
           E+  VT V H+   +   L   F   I ++  + T + 
Sbjct: 84  ESVYVTKVVHDCKRDSEAL--YFQYGIKLNNVVDTQIA 119


>gi|86141070|ref|ZP_01059629.1| hypothetical protein MED217_18000 [Leeuwenhoekiella blandensis
           MED217]
 gi|85833012|gb|EAQ51461.1| hypothetical protein MED217_18000 [Leeuwenhoekiella blandensis
           MED217]
          Length = 237

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 52/222 (23%), Gaps = 63/222 (28%)

Query: 2   ATLFIDFET------RSPIDLTKCGICK----------------------YAEDVCVILF 33
             LF+D ET       S +D     +                        +AE   ++  
Sbjct: 9   NILFLDIETVPQHEHFSDLDPELQQLYADKTEYQRKDEYTAEAFYDRAGIWAEFGKIVCI 68

Query: 34  AFGF----DDHPVELWDCVHDPVMPQVL--KEALEN----TDVTIVAHNSY-FERTVLKA 82
           + G+    +          H     Q+L  K+ L          + AHN   F+   +  
Sbjct: 69  SVGYFHNTEQGRSFRTTSFHGEEKQQLLAFKKLLSEHYNKPQHVLCAHNGKEFDFPFIAR 128

Query: 83  CF---NLDIPIHRWICTLVLARSNGLPS-------ALKAVGEALKLSSQKMEEGKELIAR 132
                 + +P               L          L  +        +     K L   
Sbjct: 129 RMIINGIKLPFK-----------LDLFGKKPWEVPHLDTLELWKFGDYKHYTSLKLLTKI 177

Query: 133 FCKG---ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                     +              +   EYC+ DV    +I
Sbjct: 178 LNIPSPKTDIDGSQVCEVFYKENDIKRIVEYCERDVVAVAQI 219


>gi|331007390|ref|ZP_08330576.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989]
 gi|330418798|gb|EGG93278.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989]
          Length = 239

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 44/151 (29%), Gaps = 34/151 (22%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAE-DVCVILFAFGFDDHP 41
           M  + +D ET                       LT     +Y + +  +   A       
Sbjct: 1   MRQIVLDTETTGLEPSKGHRIIEIGCVELENRKLTGRHYHQYIQPEREIEAQAMEVHGIT 60

Query: 42  VELWDCVHDPVMPQVLKEALE--NTDVTIVAHNSYFERTV----LKACFNLDIPIH---- 91
            E       P   Q++ E +   +    I+ HN+ F+       L    +          
Sbjct: 61  NEY--LKGKPTFVQIMDEFMAFVDGAELII-HNAPFDVGFINNELAKYGDKKYQNITHYC 117

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSS 120
             I TLV+AR         L A+ +   + +
Sbjct: 118 GVIDTLVMARQKHPGQKNNLDALCKRYGVDN 148


>gi|325955495|ref|YP_004239155.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323438113|gb|ADX68577.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 466

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLA 100
           L D      + + +   LE      VAHN  F+ + L   F    +D    +  CT+ LA
Sbjct: 70  LVDAPRFDEVAKDVYSYLE--KAIFVAHNVSFDFSFLHKQFLDVGIDWKPIKL-CTVRLA 126

Query: 101 RSNGL---PSALKAVGEALKLSSQ 121
           R         +L ++ + L +   
Sbjct: 127 RKIFPGYTSYSLGSLCKNLNIPLH 150


>gi|295395919|ref|ZP_06806104.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971192|gb|EFG47082.1| 5'-3' exonuclease (including N-terminal domain of PolI)
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 536

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 24/141 (17%)

Query: 5   FIDFETRS------------PIDLTKCGICKYA--EDVCVILFAFGFDDHPVELW--DCV 48
             D ET               ID+      ++    +  +   A        E    + +
Sbjct: 321 AFDLETTGRDPHTAHIVSAALIDMRTHETWEWLIYPEGEIPAEASAVHGITTEYARENGM 380

Query: 49  HDPVMPQVLKEALENTD-VTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNG 104
                   + +         IVAHN+ ++ T+       + L +P    I TLV+ +   
Sbjct: 381 PRAQAIAQIHQVFAERTPACIVAHNAPYDLTIFARECAQYGLALPDFFVIDTLVIDKHAE 440

Query: 105 L----PSALKAVGEALKLSSQ 121
                P  L AV     +S  
Sbjct: 441 PFRKGPRTLDAVCARWGVSLD 461


>gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 247

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 30/157 (19%)

Query: 2   ATLFIDFETRSPID-----LTKCGICKYAE------------DVCVILF---AFGFDD-H 40
             + +D ET          L + G  +  +            +    L    A       
Sbjct: 3   REIVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPE-RLIPADAIRVHGIT 61

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRWICT 96
             ++ D      +   L + + +    ++AHN+ F+R  +           +   RWI T
Sbjct: 62  DDKVKDAPKFAQIVVDLMDFIGDA--PVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDT 119

Query: 97  LVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           L LA  R  G+ ++L A+ +  K+S         LI 
Sbjct: 120 LQLAQKRFPGMANSLDALCKRYKISLVDRTLHGALID 156


>gi|257870106|ref|ZP_05649759.1| exonuclease [Enterococcus gallinarum EG2]
 gi|257804270|gb|EEV33092.1| exonuclease [Enterococcus gallinarum EG2]
          Length = 180

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 29/144 (20%)

Query: 1   MATLFIDFET-----RSPIDLTKCGICKYAEDVCVILFAFG-FDDHPVELW--------- 45
           M  + +DFET      S   L    +     D  ++   +          W         
Sbjct: 4   MNFIAMDFETANYQKHSACSLALVMV----RDSKIVGEYYTLIQPETDFFWKNIQIHGIH 59

Query: 46  --DCVHDPVMPQVLKEALE--NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
             D V+ P  P + K+  +  N +  IVAHN+ F+  VL      + ++ P +  +CT+ 
Sbjct: 60  PEDVVNAPKFPDIWKQIQQYYNLNSLIVAHNAGFDTGVLAGCLDYYGIEQPNYLSLCTVR 119

Query: 99  LARSNGL---PSALKAVGEALKLS 119
            +R          L  V + L++ 
Sbjct: 120 TSRKLYPEFENHKLNTVCQQLQIP 143


>gi|148269564|ref|YP_001244024.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1]
 gi|147735108|gb|ABQ46448.1| DNA polymerase III, epsilon subunit [Thermotoga petrophila RKU-1]
          Length = 186

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 42/145 (28%), Gaps = 41/145 (28%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAF------------GFDD------------HP 41
           +D ET         G   +A D  ++  A              F                
Sbjct: 11  VDTETT--------GTDPFAGD-RIVEIAAVPVFKGKIYRNKAFHSLVNPRIRIPALVQK 61

Query: 42  VELWDCVHDPVMPQ--VLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWI 94
           V     +     P    +     +      +V HN+ F+ T L             + +I
Sbjct: 62  VHGISNMDIEEAPDMDAVYNLFRDYVKGTVLVFHNANFDLTFLDMMAKETGNFPITNPYI 121

Query: 95  CTLVLARSN-GLPSALKAVGEALKL 118
            TL L+    G P +LK + E L +
Sbjct: 122 DTLDLSEEIFGRPHSLKWLCERLGI 146


>gi|333027027|ref|ZP_08455091.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
 gi|332746879|gb|EGJ77320.1| putative DNA polymerase III [Streptomyces sp. Tu6071]
          Length = 611

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NL 86
           D  PV++     +          +   L   L++    +VAHN+ F+   L   F    L
Sbjct: 64  DPGPVDVHGLTRERLSGAPAFDQIAGRLGAMLQD--RVLVAHNAQFDYDFLAHEFARARL 121

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKLS 119
            +P+ R +CTL L R    P     L ++     + 
Sbjct: 122 YLPVTRRLCTLALNRQVDPPTRDMKLDSLAAHYGVP 157


>gi|257895239|ref|ZP_05674892.1| exonuclease [Enterococcus faecium Com12]
 gi|257897861|ref|ZP_05677514.1| exonuclease [Enterococcus faecium Com15]
 gi|293377229|ref|ZP_06623434.1| exonuclease [Enterococcus faecium PC4.1]
 gi|257831804|gb|EEV58225.1| exonuclease [Enterococcus faecium Com12]
 gi|257835773|gb|EEV60847.1| exonuclease [Enterococcus faecium Com15]
 gi|292644090|gb|EFF62195.1| exonuclease [Enterococcus faecium PC4.1]
          Length = 177

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 33/148 (22%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET      S   L    +   +  ++   +             W        
Sbjct: 1   MNFVAMDFETANHQPYSACSLALVMVKNSQIVDEFYTL-----IQPETPFFWRNVQIHGI 55

Query: 46  ---DCVHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
              D  + P  P+V   ++   +  ++ +VAHN+ F+  VL      ++L+ P +  +CT
Sbjct: 56  HQEDVRNAPKFPEVWQTIQPYFQ-KNLLVVAHNAAFDTKVLAGCLDYYHLEQPNYLSLCT 114

Query: 97  LVLARSN---GLPSALKAVGEALKLSSQ 121
           +  +R          L  V E L +   
Sbjct: 115 VKSSRRLFPEFPNHRLNTVCENLNIQLD 142


>gi|227550322|ref|ZP_03980371.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330]
 gi|227180544|gb|EEI61516.1| DNA-directed DNA polymerase III [Enterococcus faecium TX1330]
          Length = 201

 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 33/148 (22%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET      S   L    +   +  ++   +             W        
Sbjct: 25  MNFVAMDFETANHQPYSACSLALVMVKNSQIVDEFYTL-----IQPETPFFWRNVQIHGI 79

Query: 46  ---DCVHDPVMPQV---LKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
              D  + P  P+V   ++   +  ++ +VAHN+ F+  VL      ++L+ P +  +CT
Sbjct: 80  HQEDVRNAPKFPEVWQTIQPYFQ-KNLLVVAHNAAFDTKVLAGCLDYYHLEQPNYLSLCT 138

Query: 97  LVLARSN---GLPSALKAVGEALKLSSQ 121
           +  +R          L  V E L +   
Sbjct: 139 VKSSRRLFPEFPNHRLNTVCENLNIQLD 166


>gi|322712295|gb|EFZ03868.1| 3'-5' exonuclease [Metarhizium anisopliae ARSEF 23]
          Length = 281

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 38/148 (25%), Gaps = 16/148 (10%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA--------RSNGLPSA 108
           LK+ LE + +  V  +   +   L    +  I +       ++         R       
Sbjct: 108 LKDILEFSSIPKVFFDVRNDSDAL--HGHFKIKLAGIQDLQLMELATRSFSKRCVN---G 162

Query: 109 LKAVGEALKLS--SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
           L    E        +K+   +            E              +    YC  DV 
Sbjct: 163 LSKCIERDGSFTIDEKLVWMETKKKGLLLFAPEEGGSYDIFKQRPLP-KDIVLYCAQDVQ 221

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTIND 194
           +   ++       SK+     LD +   
Sbjct: 222 ILPRLWSYYNRKLSKKWRTKMLDASKER 249


>gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
 gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 324

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 68/247 (27%), Gaps = 31/247 (12%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 18  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 77

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 78  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPTNKVIDTVFLA 135

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPNHREAWRL 156
                +     L+ +   L +         + I      +       + N+  ++     
Sbjct: 136 KKYMKHAPNHKLETLKRMLGIRLSSHNALDDCITCAAVYQKCAAIEEEGNRKVNKAVLDE 195

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y    V       KR            YLD         + V         +     
Sbjct: 196 TAVYEA--VKEMLARNKRNVEWLRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTEILE 251

Query: 217 KLDQELE 223
              +E+ 
Sbjct: 252 DDVKEIC 258


>gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1438

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 94/357 (26%), Gaps = 57/357 (15%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDHPVE--------------L 44
            +  D ET         + +    K  E   +  +A   + H                 +
Sbjct: 421 YVVFDIETTGLSVTQNKIIEIAAVKMHEGKEIDRYATFVNPHERIPYNIQQLTNINDEMV 480

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
            D      + +       +    +VAHN+ F+   ++       L    +  + TL LAR
Sbjct: 481 KDAPDVEPVMKEFVAFAGDA--VLVAHNARFDIGFIQATLRKMGLPEMTNPVLDTLELAR 538

Query: 102 SNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR--EAWRL 156
                     L  +    K++   +E     I               +    +  +    
Sbjct: 539 LLFPTMKNHRLNTLTSKYKVA---LESHHRAIDDTVALTEVLNGLLNDAEQIKGLKMLDR 595

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-----TINDRGYCVDVALAHTLN--- 208
             +Y   D++  R     +  L+   ++  Y            R  C+  +    +    
Sbjct: 596 LNDYVGKDLSTVRPFHCCIYALNPVGKKNLYKLVSMSHTEYFKRVPCIPKSKLSEMRDGL 655

Query: 209 ---------QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTC 259
                    +  +    K ++E E +             +   L  +  +   D  +T  
Sbjct: 656 LIISGCEKGEFFEAVLNKSEEEAEEIAQFYDVLEIQPLTMYMHLVEKQLVSGPDALKTAI 715

Query: 260 QRV--LSSNKKLTPQAIQVFNNRMRASRSA-------VLKLNTLVEAMNSDGRLRGT 307
           ++V  +         A    +      +         +   + L +    D  LR T
Sbjct: 716 RKVCDIGKRLDKPVIATGNVHYLETRDKLYRDITIHGITGFSPLKDIRKPDAHLRTT 772


>gi|240142395|ref|YP_002966905.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
 gi|240012339|gb|ACS43564.1| DNA polymerase III epsilon subunit [Methylobacterium extorquens
           AM1]
          Length = 248

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRWICTLVLARSN---GL 105
           +   + E + ++    + HN+ F+       F L     +   R   +LV AR     G 
Sbjct: 77  VAADIVEFIADS--PAIFHNAPFDLGFFDLEFGLLSLPSLDRSRVTDSLVHARKLLPAGA 134

Query: 106 PSALKAVGEALKLSSQKMEEGKELIA 131
            + L A+     +   +  +   L+ 
Sbjct: 135 KAGLDALCNRYGIDRTRRTKHGALMD 160


>gi|108801863|ref|YP_642060.1| DNA polymerase III subunit epsilon [Mycobacterium sp. MCS]
 gi|119871016|ref|YP_940968.1| DNA polymerase III subunit epsilon [Mycobacterium sp. KMS]
 gi|108772282|gb|ABG11004.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS]
 gi|119697105|gb|ABL94178.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS]
          Length = 330

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 37  FDDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFN 85
            D  P  +     +          +   L E L     T+VAHN  F+ + L        
Sbjct: 60  VDPGPTHVHGLTAEMLEGAPRFGDVVADLAELLR--GRTLVAHNVGFDYSFLTAEAELVG 117

Query: 86  LDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEE 125
            ++PI   +CT+ LAR   L      L+ +     +   K  +
Sbjct: 118 AELPIDSVMCTVELARRLDLGTENLRLETLAAHWGVPQLKPHD 160


>gi|262342195|gb|ACY54608.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y    +       +    L++ A   K     + + +A +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGADDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 120

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 121 DKLLEAIKKASERGFIKALDGGKII 145


>gi|229012784|ref|ZP_04169953.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
 gi|228748465|gb|EEL98321.1| DNA polymerase III alpha subunit [Bacillus mycoides DSM 2048]
          Length = 318

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 72/275 (26%), Gaps = 30/275 (10%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AF-----GFDDHPVELWDCVH-- 49
             + IDFET         + +    KY     V  F ++        D    L    +  
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPELSIPDRITSLTGITNYR 71

Query: 50  --DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-- 100
             D    + +            IVAHN+ F+   LK       L  P +  I T+ LA  
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFLAKK 131

Query: 101 RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
              +     L+ +   L +         + I      +    + +  K        +  E
Sbjct: 132 YMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAVEEEGKRKA--NKEVLDE 189

Query: 160 YCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
               +      +  + +           YLD         + V         +  +    
Sbjct: 190 TAVFEAVKEMLVRNKRDIEWIRCMNVGSYLDIKAFYPIIRLKVKGRKKYV--LTEKMEDD 247

Query: 219 DQELE---SLTYGLVSSSRCLEKLKTWLFLETGLH 250
            +E+    +    L S       +   +     L 
Sbjct: 248 VREICTSLTHEAALKSEIGNTRIMIDSVEDILKLE 282


>gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
 gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
          Length = 1451

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 74/255 (29%), Gaps = 19/255 (7%)

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVL 99
           D V      + +    +    D  IV HN+ F+   +    +   N+++    WI TL L
Sbjct: 490 DMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERH-NMEMIQEPWIDTLPL 548

Query: 100 ARSNGLPSA---LKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           AR          L  + + L   L              F      +   ++    H +  
Sbjct: 549 ARYLYPEMKGFRLNTLAKKLNIKLEHHHRAIYDAEATGFIYYAMLKDAEEKQILYHDDFN 608

Query: 155 RLFGE---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           +  GE   Y     +    + K  E L +  +           R   V  ++     + +
Sbjct: 609 KHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSESMVKYFYRVPRVPRSILEKYREGL 668

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-RVLSSNKKLT 270
            V     D E+ +       +     K K   +    +  + L E   +  ++  N  L 
Sbjct: 669 IVGSACADGEVFTAMMQKGYTI---AKQKAEFYDYLEVQPKPLYEPLLEQELVKDNDNLE 725

Query: 271 PQAIQVFNNRMRASR 285
                +        +
Sbjct: 726 EIITNMVKLAHELDK 740


>gi|86608996|ref|YP_477758.1| exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557538|gb|ABD02495.1| exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 783

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 17/165 (10%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           M+ L ID E     +L +  +   +      L    +     E       P     +   
Sbjct: 1   MSYLVIDTE--GNANLEEIALIDSSGK----LIYHAY---TQEYSPHHPQPKPLAQIVAD 51

Query: 61  LEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAV 112
           L       T+V H++  +  +LK  F   N D   +   CT   A+         +L+ +
Sbjct: 52  LRRLAQGKTLVFHHADHDLKILKQAFDQVNQDWLPNPIFCTWSAAKQCFPNLAGYSLEYL 111

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
            + L +  +      +L               R+  + +   +  
Sbjct: 112 SKHLGIQLESGYFNSKLAHDASYDALFTYHLYRHLTHAQLKAQNV 156


>gi|305667231|ref|YP_003863518.1| DNA polymerase III subunit epsilon [Maribacter sp. HTCC2170]
 gi|88708165|gb|EAR00403.1| DNA polymerase III, epsilon subunit [Maribacter sp. HTCC2170]
          Length = 454

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 48/154 (31%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPV--ELWDCVHDP------ 51
           M T+ +D ET            KY E+  +   A   FD H V  +    V+        
Sbjct: 1   MYTI-LDIETTG---------GKYNEEG-ITEIAIHKFDGHQVVDKFISLVNPEKDIQPF 49

Query: 52  -------------------VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP 89
                               + + + E  E++   +VAHN+ F+  +L+        +  
Sbjct: 50  VVNLTGINNKMLRTAPKFHEVAKRIVEITEDS--VLVAHNAQFDYRILRTEFRRLGYNFE 107

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSS 120
             + +CT+ L++         +L  +  +L +  
Sbjct: 108 -RKTLCTVDLSKYLLPDAESYSLGKLVRSLGIPM 140


>gi|328956370|ref|YP_004373703.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2]
 gi|328456694|gb|AEB07888.1| DNA polymerase III, epsilon subunit [Coriobacterium glomerans PW2]
          Length = 977

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 52/191 (27%), Gaps = 53/191 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-------PVELWDCVHDPVMP 54
             + +D ET               +D  +I  +                +        +P
Sbjct: 48  DVVVLDTETTGLS----------RQDDELIEISAAVLSGREVTERFETFV---RPSKPIP 94

Query: 55  QVLKEA--LENTDV--------------------TIVAHNSYFERTVLKACFNLDIPIHR 92
             + E   + + DV                     ++AHN+ F+R  ++A          
Sbjct: 95  AEIVELTGIRDADVRDAPPATQAVRDLARFVGGRPVIAHNAAFDRAFIEAVPGGSDASDI 154

Query: 93  WICTLVLARSNGL---PSALKAVGEALKLSSQKMEEGKEL--------IARFCKGETHEC 141
           WI +L L+R          L ++ E    +      G ++        I      +    
Sbjct: 155 WIDSLALSRIALPRLASHRLSSLAETFGCADVSHRAGDDVRALCGVWRILLCALADLPAG 214

Query: 142 LYDRNKPNHRE 152
           L  R    H +
Sbjct: 215 LLRRLADMHPD 225


>gi|302557678|ref|ZP_07310020.1| ribonuclease D [Streptomyces griseoflavus Tu4000]
 gi|302475296|gb|EFL38389.1| ribonuclease D [Streptomyces griseoflavus Tu4000]
          Length = 430

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 29/181 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           +D  +    +Y +   ++      +      +            L EAL  + V  V H 
Sbjct: 68  VDAERASGYRYGQRAYLV--QLRREGAGTALIDPVACPD--LSSLGEAL--SGVEWVLHA 121

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L+    + +   R   T +  R  G P   L A+ E   +    +E+G   + 
Sbjct: 122 ATQDLPCLRE---IGMVPSRLFDTELAGRLAGFPRVGLGAMVE--NVLGFVLEKGHSAVD 176

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
              +                E W     Y   DV +  ++   LE    ++ +L +  Q 
Sbjct: 177 WSTRPL-------------PEPW---LRYAALDVELLVDLRDALEKELDRQGKLDWARQE 220

Query: 192 I 192
            
Sbjct: 221 F 221


>gi|269967938|ref|ZP_06181978.1| ribonuclease D [Vibrio alginolyticus 40B]
 gi|269827461|gb|EEZ81755.1| ribonuclease D [Vibrio alginolyticus 40B]
          Length = 388

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 25/158 (15%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD + + L D      M       L++T V  V H    +  V +  F         + T
Sbjct: 63  FDGNRLSLIDPTELTDMT-PFVALLKDTSVLKVLHACGEDLEVFQNAFG--CTPFPMVDT 119

Query: 97  LVLARSNGLPSALKAVG---EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            ++A   G   +        E L +   K E   + +AR                     
Sbjct: 120 QLMAAFLGHGLSTGFASLVEEYLGVELDKSESRTDWMARPLT------------------ 161

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
            +   +Y   DV     ++++L    ++      + Q 
Sbjct: 162 -QKQLDYAAADVHYLLPLYEKLFDKVTQAGWWEAVQQE 198


>gi|262283016|ref|ZP_06060783.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
           2_1_36FAA]
 gi|262261268|gb|EEY79967.1| DnaQ family exonuclease/DinG family helicase [Streptococcus sp.
           2_1_36FAA]
          Length = 818

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 82/291 (28%), Gaps = 52/291 (17%)

Query: 1   MATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
           M    +D E   T S   + + GI    ED  +               D      + + +
Sbjct: 1   MKYAIVDLEATGTGSTAKIIQVGI-VILEDGEI---------KQTYQTDINPHEALEEHI 50

Query: 58  KEA--LEN--------------------TDVTIVAHNSYFERTVLKA---CFNLDIPIHR 92
           K+   L +                     D   VAHN  F+  +L         D+ +  
Sbjct: 51  KQLTGLSDQRLSQAPDFSQVAREIYELIEDAVFVAHNVKFDANLLAESLFWEGFDL-LSP 109

Query: 93  WICTLVLARSNGLP---SALKAVGEALKLS-SQKMEEGKELIA---RFCKGETHECLYDR 145
            + T+ LA+          L ++ E L++   Q      + +A    F K +       +
Sbjct: 110 RVDTVELAQVVFPTYEKYGLSSLCELLEIPLEQAHTAISDAMATALLFLKIQEKIQSLPK 169

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND----RGYCVDV 201
                         Y      V  + F+++    + +    +           +   +  
Sbjct: 170 PLLERLLILSNSLIYESR--LVLEDCFEKMPEGRACDWLDCHGIYLKKQAKVGKERYLST 227

Query: 202 ALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
             A  ++ +   ER +  +    +   + +      + +  L    G  L 
Sbjct: 228 DFAKNISLLGLEERPEQQKFASLIEEAIKNPLPNFLQAQAGLGKTYGYLLP 278


>gi|269796817|ref|YP_003316272.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
 gi|269099002|gb|ACZ23438.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
           [Sanguibacter keddieii DSM 10542]
          Length = 611

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 25/149 (16%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVC---VILFAFG------FDDHPVELWDCVHD------ 50
           +D ET          +      V     +  ++        D  PV +     +      
Sbjct: 25  VDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPGVDPGPVHVHGLTRERLAGAP 84

Query: 51  --PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNGL 105
               +   L E + +    +VAHN+ F+   L A        + + R +CTL L+R   L
Sbjct: 85  QYQDVAGTLDELVRD--RVLVAHNARFDWGFLAAESDRARAPLSVDRRLCTLALSRRLDL 142

Query: 106 PSA---LKAVGEALKLSSQKMEEGKELIA 131
           P +   L  V     +  ++  + ++ + 
Sbjct: 143 PVSDLRLATVAAHWGVQQRRAHDAEDDVR 171


>gi|78184888|ref|YP_377323.1| exonuclease [Synechococcus sp. CC9902]
 gi|78169182|gb|ABB26279.1| DNA polymerase III, epsilon subunit [Synechococcus sp. CC9902]
          Length = 307

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 24/138 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGF-------DDHPVELWDCVHDPV 52
           L +D ET        C +   A    V    +L    F          P+          
Sbjct: 79  LILDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFLLPAETNAAEPINRIP-AAVTR 137

Query: 53  MPQVLKEALE------NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV-----LAR 101
           +PQ  K+AL       +    +VAHN+ F+R        L      W+C++        R
Sbjct: 138 LPQPWKQALLWFQNLLDAADVLVAHNAAFDRQWFGR-GELPTVTQPWLCSMEDMRWPADR 196

Query: 102 SNGLPSALKAVGEALKLS 119
                 +++ +  A  + 
Sbjct: 197 QLRSRPSVRDLALAYGVP 214


>gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 231

 Score = 43.2 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 63/238 (26%), Gaps = 42/238 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------- 54
             + +D ET     L      +  E  CV L         V       +  +P       
Sbjct: 6   REIVLDTETTG---LDTESGHRIIEIGCVELIN-RIPTGKVFHRYLNPERDIPYHSFKIH 61

Query: 55  ---QVL---KEALEN---------TDVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
              +     K    +         ++  +V HN+ F+       L       I   R + 
Sbjct: 62  GISEEFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELSKLNARLISSDRVLD 121

Query: 96  TLVLAR--SNGLPSALKAVGEALKLSSQKMEEGKELI--ARFCKGETHECLYDRNKPNHR 151
           TL LAR    G P++L A+ +   +S +  E    L+      K         +      
Sbjct: 122 TLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFLFDN 181

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           E        C  D   T    K       +                 ++  L +   +
Sbjct: 182 E--------CNQDSNSTFVQHKVRNLTPREHLPNSEEIDEHKKLLDKINNTLWNKYIE 231


>gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis
           CV56]
          Length = 794

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            +   ++E L ++    VAHN+ F+  +L+  F    L+      + T+ LAR       
Sbjct: 74  EVAAKVRELLTDS--VFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVDLARVFYPTFE 131

Query: 107 -SALKAVGEALKLSSQ 121
              L+++ E L L+  
Sbjct: 132 KYGLESLSEKLDLAHD 147


>gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 1442

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 57/220 (25%), Gaps = 21/220 (9%)

Query: 47  CVHDPVMPQVLKEALE--NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
                     ++  L+  +  +   AHN+ F+   +      + +      ++ TL +AR
Sbjct: 486 VAQGKEEEAAVRAFLDFCDGKILA-AHNASFDMGFMSIALERYGIP-NTITYVDTLPMAR 543

Query: 102 SNGLP---SALKAVGEALKLSS-QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           +         LK +    K+          + I           L ++   +        
Sbjct: 544 TLIPDIARHNLKKLASYFKIDMGHHHRAIDDSICSAKIFVRLMGLAEKQHCDRAADLNRL 603

Query: 158 GEYCKGDVTVTRE-----IFKRLEPLSSKEQELWYL-DQTINDRGYCVDVALAHTLNQIV 211
                  +  T       I+ + +       +L          +   +  +L     + +
Sbjct: 604 MR--LEQIIKTERPYHVIIYAKDQDGLQALYDLVSASHVDYFYKKPRIPKSLLQKKRKHL 661

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
            +       EL   T    + +    +     +    +  
Sbjct: 662 LIGSACEAGELY--TAVKENWNDARLRPILDFYDYYEVQP 699


>gi|262342161|gb|ACY54591.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 7/108 (6%)

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418
             +   RS    S     V +D +G+E R L           +   G            +
Sbjct: 7   PFAHEYRSLFKPSGNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIH 59

Query: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
            A A++    R  GK     L Y GG       A  +  + +     +
Sbjct: 60  TALAEIYGTDRKSGKGATYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|188580742|ref|YP_001924187.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001]
 gi|179344240|gb|ACB79652.1| DNA polymerase III, epsilon subunit [Methylobacterium populi BJ001]
          Length = 236

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 41/150 (27%), Gaps = 37/150 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF----------------------AFGFDD 39
             + +D ET       K G  +  E  CV L                       AF    
Sbjct: 3   REIVLDTETTGTD--AKNG-DRLIEIGCVELINHVQTGKFYHQLINPQRAVSEGAFAVHG 59

Query: 40  -HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLDIPIH 91
                L D      +         +  +  V HN+ F+   L              IP+ 
Sbjct: 60  ISDAMLADKPVFADVVDAFVAFCGDARL--VIHNAPFDVGFLNMEFARLGPAAPKAIPLE 117

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLS 119
             + TL+LAR     +   L A+     + 
Sbjct: 118 DVVDTLLLARRKHPGAANNLDALCNRYGVD 147


>gi|109898679|ref|YP_661934.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700960|gb|ABG40880.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
           T6c]
          Length = 235

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 40/157 (25%), Gaps = 46/157 (29%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYAEDVCVILFAFGFDDHPV 42
           M  + +D ET                       LT      Y     +I       +   
Sbjct: 1   MRQIVLDTETTGIDPRQGHRIIEIGCVELLNRRLTGNTFHVYVNPQRLI-------EQEA 53

Query: 43  ELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFNLDIPIHR- 92
                + +  +    K    +         +   +V HN+ F+   +   F     +   
Sbjct: 54  IEVHGITNEYLLD--KPLFADVAADFVKFISGAQLVIHNAPFDVGFMDHEFARVAAMAGK 111

Query: 93  -------WICTLVLARSNGLPS--ALKAVGEALKLSS 120
                   + TL +AR         L A+ +   + +
Sbjct: 112 KTSDMCTVLDTLEMARQIHPGQKNNLDALCKRYGIDN 148


>gi|73662206|ref|YP_300987.1| exonuclease [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494721|dbj|BAE18042.1| putative exonuclease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 184

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 27/139 (19%)

Query: 4   LFIDFETR-------SPIDLTKCGICKYAEDVCVIL----------FAF-GFDDHPVELW 45
           + +DFET          + + K    +  E    ++           A        VE  
Sbjct: 7   IALDFETANGKRTSICAVGMVKVVNHQITESFYTLVNPNDYFSQQNIAVHSIHPEQVE-- 64

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR- 101
           D      +   + + + +  + +VAHN+ F+  VL      F  D P   + C+L L+R 
Sbjct: 65  DAPTFQTVYPYMLQFIGD--LPVVAHNAAFDMNVLHESISAFGFDTPNMTYFCSLQLSRR 122

Query: 102 -SNGLPSALKAVGEALKLS 119
                   L  + +   L 
Sbjct: 123 TVENHRYGLNYMMQYYNLD 141


>gi|332362812|gb|EGJ40606.1| DNA polymerase III [Streptococcus sanguinis SK355]
          Length = 814

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 72/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + E        ++            +       L  +
Sbjct: 184 ADSVIYESRLAIEEVYQTMP--DQQEKELQSCHGIFLRRPQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER +  +    +   L        + +T L    G  L 
Sbjct: 242 GLEERPEQLKFARFMEEALDQQEPSFLEAQTGLGKTFGYLLP 283


>gi|307131134|ref|YP_003883150.1| ribonuclease D [Dickeya dadantii 3937]
 gi|306528663|gb|ADM98593.1| ribonuclease D [Dickeya dadantii 3937]
          Length = 373

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 42/168 (25%), Gaps = 40/168 (23%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L      D+   +         P   
Sbjct: 24  EVALDTEFVRTRTYY---------------PQLGLIQLYDGDNLSLIDPLAIRDWAP--F 66

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           +  L+N  VT   H    +  V    F   +P   +I T +LA   G P +         
Sbjct: 67  RALLQNPQVTKFLHAGSEDLEVFLNAFG-GLP-SPFIDTQILAAFLGKPLSYGFAALVAD 124

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                +++ +       +  +                    +Y   DV
Sbjct: 125 YRQVALDKSESRTDWLARPLS----------------EKQCQYAAADV 156


>gi|268609211|ref|ZP_06142938.1| exonuclease [Ruminococcus flavefaciens FD-1]
          Length = 179

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 42/151 (27%)

Query: 2   ATLFIDFET-------------------------RSPIDLTKCGICKYAEDVCVILFAFG 36
             +  D ET                          S +D        + +   + L    
Sbjct: 3   RYIVFDVETPNFANNHMSAIGITVVEDGRIADSFFSLVDPET-----HFDHFNIRLTG-- 55

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIP-IHR 92
            D   V+         + Q ++  + N+ +  VAHN+ F+ +VLK C   + ++     +
Sbjct: 56  IDPKKVQGAPNFA--QLWQKIEPIM-NSGIL-VAHNAVFDMSVLKKCLSAYGIEWKSTAK 111

Query: 93  WICTLVLARSN--GLPSALKAVGEALKLSSQ 121
           ++CT+   R    G    L  + +   +S  
Sbjct: 112 YLCTVQAGRKLLPGRGHKLNEMCDYYGISLD 142


>gi|262212077|gb|ACY35655.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +  ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMAGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHRVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           + +      +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKDAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|229134413|ref|ZP_04263226.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
 gi|228649034|gb|EEL05056.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST196]
          Length = 318

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 66/245 (26%), Gaps = 27/245 (11%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AF-----GFDDHPVELWDCVH-- 49
             + IDFET         + +    KY     V  F ++        D    L    +  
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGITNYR 71

Query: 50  --DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-- 100
             D    + +            IVAHN+ F+   LK       L  P +  I T+ LA  
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFLAKK 131

Query: 101 RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
              +     L+ +   L +         + I      +    + +  K        +  E
Sbjct: 132 YMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAVEEEGKRKA--NKEVLDE 189

Query: 160 YCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
               +      +  + +           YLD         + V         +  +    
Sbjct: 190 TAVFEAVKEMLVRNKRDIEWIRCMNVGSYLDIKAFYPIIRLKVKGRKKYV--LTEKMEDD 247

Query: 219 DQELE 223
            +E+ 
Sbjct: 248 VREIC 252


>gi|224537614|ref|ZP_03678153.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520756|gb|EEF89861.1| hypothetical protein BACCELL_02494 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 164

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 25/138 (18%)

Query: 5   FIDFETRSPIDLTKCGICK-YAEDVCVILFAFG-FDDHPVELW------------DCVHD 50
            IDFET +    + C +      +  ++   +      P                D    
Sbjct: 6   AIDFETANEQRTSVCSVGIVIVREGEIVDTYYSLIRPEPEYYTYWNTRVHGLTLADTAKA 65

Query: 51  PVMP---QVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
           P+ P   Q +   +E   + ++AHN  F+ + LK     ++LD P + + CTL  AR   
Sbjct: 66  PIFPTVWQEIAPLIE--GLPLIAHNKGFDESCLKAVFRTYSLDYPDYEFHCTLSTARRRI 123

Query: 105 ---LPSALKAVGEALKLS 119
                  L  V       
Sbjct: 124 KGLPNYQLHTVAAYFGYE 141


>gi|304310986|ref|YP_003810584.1| hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1]
 gi|301796719|emb|CBL44931.1| Hypothetical protein HDN1F_13480 [gamma proteobacterium HdN1]
          Length = 300

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 68/186 (36%), Gaps = 34/186 (18%)

Query: 4   LFIDFETR----SPIDLTKCGICKYAEDVCVI----LFAFGFDDHPVELWDCVHDP--VM 53
           + IDFET     S   +T+ G  K+     ++    +FA+     P             +
Sbjct: 36  IAIDFETTGLEASSAAITEIGAVKFKISGEIVDQFEMFAY-----PGTPIPVRIQELTGI 90

Query: 54  PQV-----------LKEAL--ENTDVTIVAHNSYFERTVLKACFNL--DIPIHRWICTLV 98
                          K+ L   +   T +AHN+ FE   ++A +    ++P   +I TL 
Sbjct: 91  TDEMVTGCEPPLFVWKKFLDWADGANTFIAHNAPFEARFVRALYEKEGEMPNIYFIDTLQ 150

Query: 99  LAR-SN--GLPSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           ++R         +LK + +       + + + K     +C+  +           ++++ 
Sbjct: 151 ISRNRLPEESSYSLKNLVKFKEGEPHRALADAKACSTLYCRLASTYRNGKIPVGTYKKSI 210

Query: 155 RLFGEY 160
           R + +Y
Sbjct: 211 RDYKDY 216


>gi|255325116|ref|ZP_05366222.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
 gi|255297681|gb|EET76992.1| ribonuclease D [Corynebacterium tuberculostearicum SK141]
          Length = 414

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 38/162 (23%), Gaps = 33/162 (20%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            ID E        +    +Y +   V+          +      H   +   L   L   
Sbjct: 37  AIDTE--------RASGYRYDDRAFVVQIR-RRGAGTMLFAPEGHREELTAALAPVLN-- 85

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
               + H ++ +   L     L +       T + AR  G     L  +   L       
Sbjct: 86  GTEWIIHAAHSDLPCLGW---LGLFPGSIFDTELAARLAGFERPNLGTMVAEL------- 135

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                      + E      D +     +       Y   DV
Sbjct: 136 --------FDVELEKGYGDADWS---TPQLSEELKAYAALDV 166


>gi|229472347|gb|ACQ72688.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNRRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|30063256|ref|NP_837427.1| exodeoxyribonuclease X [Shigella flexneri 2a str. 2457T]
 gi|56479974|ref|NP_707706.2| exodeoxyribonuclease X [Shigella flexneri 2a str. 301]
 gi|30041508|gb|AAP17236.1| hypothetical protein S1920 [Shigella flexneri 2a str. 2457T]
 gi|56383525|gb|AAN43413.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|281601259|gb|ADA74243.1| Exodeoxyribonuclease 10 [Shigella flexneri 2002017]
 gi|313650662|gb|EFS15064.1| exonuclease family protein [Shigella flexneri 2a str. 2457T]
 gi|332757646|gb|EGJ87979.1| exonuclease family protein [Shigella flexneri 2747-71]
 gi|332758031|gb|EGJ88357.1| exonuclease family protein [Shigella flexneri K-671]
 gi|332766817|gb|EGJ97018.1| exonuclease family protein [Shigella flexneri 2930-71]
 gi|333018617|gb|EGK37911.1| exonuclease family protein [Shigella flexneri K-304]
          Length = 220

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSLLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGLKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|304383117|ref|ZP_07365592.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
 gi|304335803|gb|EFM02058.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
          Length = 889

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 48/175 (27%), Gaps = 21/175 (12%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP--IHRW---- 93
             ++  +C+          + + +  V    HN  ++  +L        P  + RW    
Sbjct: 562 EEMKHHECLSPEEAFAQFMDYVADDAVL--GHNVEYDFHILLYNLLRHAPQWVERWKAVE 619

Query: 94  -ICTLVLARSNGL---PSALKAVGEALKLS-------SQKMEEGKELIARFCKGETHEC- 141
              +L L R          LK + E L L           +   K L     +       
Sbjct: 620 RFDSLKLIRLLHPRQKSYKLKHLLERLGLEGTNSHLADDDIMATKSLADYCYRHAVACVD 679

Query: 142 LYDRNKPNHREAWRLFGE-YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
              R    HR     F   Y          ++ R E  +   +  +  D  +  R
Sbjct: 680 EQQRFIDAHRPMVEKFRHVYADLFFHSFHRLYVRHERQAFTAELRYVYDTLVETR 734


>gi|262212213|gb|ACY35723.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 10  RFRELFILTPGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 62

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +       +    L++ A   K     + + +A +  
Sbjct: 63  DKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSQAAKKKGKEIRQAYIEAIDGL 119

Query: 483 RWMQENHPEHAIEDLFIGTACERVK 507
             + E   + +           ++ 
Sbjct: 120 DKLLEAIKKASERGFIKALDGRKII 144


>gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
 gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
           14672]
          Length = 327

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 24/135 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCVILFAFGF-----DDHPVELWDCVHD------- 50
           +D ET        +    + +      V    +       D  PV +     +       
Sbjct: 26  VDVETTGLARDDRIVSAAVYRLDARGEVEDHWYTVVNPERDPGPVWIHGLTSEALEGAPL 85

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLARSNGLP 106
              + +     LE     +VAHN+ F+  ++   +     + P+ + +CT+ L++  GLP
Sbjct: 86  FRDVAEEFATRLE--GRVLVAHNAVFDWQMIAREYARARSEAPVKQRLCTIALSKELGLP 143

Query: 107 ---SALKAVGEALKL 118
                L+++     +
Sbjct: 144 LPNHKLESLAAHFGV 158


>gi|170769422|ref|ZP_02903875.1| exodeoxyribonuclease X [Escherichia albertii TW07627]
 gi|170121746|gb|EDS90677.1| exodeoxyribonuclease X [Escherichia albertii TW07627]
          Length = 220

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVVDGKIVNPMSHLVRPDR----PITPQAMAIHRITESMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|73979345|ref|XP_539984.2| PREDICTED: similar to Werner syndrome protein [Canis familiaris]
          Length = 1680

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 64/228 (28%), Gaps = 40/228 (17%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    +    +   V L      ++   L+      V PQ LK  LEN  +        
Sbjct: 307 DMEWPPVYTKRKPSRVALIQLCVSENKCYLFHISSMSVFPQGLKMLLENEAIKKAGVGIK 366

Query: 75  ---------FERTVLKACFNL-DIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
                    F+   LK    L D+   +  CT           +L  + + L        
Sbjct: 367 GDQRKLLCDFDID-LKNFVELTDVANEKLKCT--------ETWSLNGLVKHL-------- 409

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
            GK+L+       ++   +   +            Y   D      I+++L  +     E
Sbjct: 410 FGKQLLKDRSIRCSNWGDFPLTEDQ--------KLYAATDAYAGLIIYQKL-EILGNAVE 460

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
            + ++    +    +D          +  E   L + L      L   
Sbjct: 461 RFAIN-KKEEEILPID---VKKQLTSISEEMMDLAKHLPDALKKLEDP 504


>gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 315

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 68/247 (27%), Gaps = 31/247 (12%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPTNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET-HECLYDRNKPNHREAWRL 156
                +     L+ +   L +         + I      +       + N+  ++     
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNALDDCITCAAVYQKCAAIEEEGNRKVNKAVLDE 186

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
              Y    V       KR            YLD         + V         +     
Sbjct: 187 TAVYEA--VKEMLARNKRNVEWLRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTEILE 242

Query: 217 KLDQELE 223
              +E+ 
Sbjct: 243 DDVKEIC 249


>gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 1402

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 25/139 (17%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVI-LFAFGFDDH---PVEL-----WDCVHD 50
           + +D ET         + + G  K  E+  +   F+   D     PV +           
Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVK-IENGQITDRFSTFVDPEGKIPVRISELTGIYQDMV 449

Query: 51  PVMPQVLKEALE----NTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
              P+++   LE     +   +VAHN+ F+   LK  +    + I  + +I TL L+R  
Sbjct: 450 DKAPKLIDAILEFERFASGSVLVAHNAQFDIGFLKKAYQECGI-IFDYTYIDTLELSRRL 508

Query: 104 ---GLPSALKAVGEALKLS 119
                   L  V E L + 
Sbjct: 509 LTDLSSYKLNKVAEFLNVE 527


>gi|304413386|ref|ZP_07394859.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola
           LSR1]
 gi|304284229|gb|EFL92622.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola
           LSR1]
          Length = 242

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 43/170 (25%), Gaps = 49/170 (28%)

Query: 2   ATLFIDFETRSPI----------------------DLTKCGICKYAEDVCVILFAFGFDD 39
             + +D ET                           LT      Y +   ++       D
Sbjct: 7   RQIVLDTETTGLNKVGAHYQGHRVIEIGAVEMVNRRLTGNHFHVYLKPDRLV-------D 59

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTI---------VAHNSYFERTVLK---ACFNLD 87
                   + D  +    K    +T  T          + HN+ F+   L         +
Sbjct: 60  PEAYAIHGISDEFLAD--KPTFADTAKTFLDFIRGADLIIHNASFDIGFLDYEFRLLEQN 117

Query: 88  IPIHRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  CT    L+LAR         L A+ +   + + K      L+ 
Sbjct: 118 SAKIETFCTITDSLLLARQLFPGKRNNLNALCDRYHIDNSKRTLHGALLD 167


>gi|148272845|ref|YP_001222406.1| putative ribonuclease D [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830775|emb|CAN01715.1| putative ribonuclease D [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 496

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 22/104 (21%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           DV  V H +  +   L+    + +   R   T + +R  GLP   L  V E L       
Sbjct: 173 DVEWVLHAASQDLACLRE---VGLDPQRIFDTELASRLLGLPRVGLGTVVEEL------- 222

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
                L     K  +      R  P      R +  Y   DV +
Sbjct: 223 -----LGIHLAKEHSAADWSTRPLP------RAWLVYAALDVEL 255


>gi|262212211|gb|ACY35722.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S     V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLFKPSGNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|256830746|ref|YP_003159474.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579922|gb|ACU91058.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 972

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 51/175 (29%), Gaps = 37/175 (21%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-------PVMPQVLK 58
           +D ETR      + G         ++  +       V ++D             +P+++ 
Sbjct: 798 LDLETRRSA--QEVGG---WHRADLMGVSC------VVVYDSASGDFRDYLQEDVPRLVG 846

Query: 59  EALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           + +E     +V  N   F+  VL      D      +          L S  + +G  L 
Sbjct: 847 DLVEFD--MVVGFNILKFDYAVLGGLSRFDFASLPTLD--------ILGSIHETLGYRLS 896

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           L          L                     +        YC+ DV VTR++F
Sbjct: 897 LDH--------LARETLGEAKSASGMQALAWWKQGRIADIIAYCRQDVAVTRDLF 943


>gi|194476704|ref|YP_002048883.1| possible DNA polymerase III, epsilon subunit [Paulinella
           chromatophora]
 gi|171191711|gb|ACB42673.1| possible DNA polymerase III, epsilon subunit [Paulinella
           chromatophora]
          Length = 302

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 32/144 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVI----LFAFGF----DDHPVELWD------- 46
             L +D ET S        I   A    +     L    F    +++P    +       
Sbjct: 77  KLLILDTETTSLSPTDGNCIEIGAILFHLRHRATLSQIAFLLPCENNPSYSLNGISAETT 136

Query: 47  --CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTL---- 97
                           +E++D  IVAHN+ F+R      F +D        W+C++    
Sbjct: 137 RLIYPWEAGLSYFLTLVESSD-LIVAHNASFDRQW----FGIDPLPIINKPWLCSMQDIN 191

Query: 98  --VLARSNGLPSALKAVGEALKLS 119
             V  RS     +++ +  A  + 
Sbjct: 192 WPVQ-RSLRSNPSIRDLALAYGVP 214


>gi|104782586|ref|YP_609084.1| DNA polymerase III subunit epsilon [Pseudomonas entomophila L48]
 gi|95111573|emb|CAK16293.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudomonas entomophila L48]
          Length = 251

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 12/90 (13%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLDI-PIHR 92
              L        + Q   E +E    T+V HN+ F+   +             DI     
Sbjct: 67  DAFLVGKPRFGDVAQEFFEFIE--GATLVIHNAAFDVGFINNEFALLGQHDRADISQHCS 124

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL++ARS       +L A+ +   + +
Sbjct: 125 ILDTLMMARSRHPGQRNSLDALCKRYGIDN 154


>gi|254240209|ref|ZP_04933531.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192]
 gi|126193587|gb|EAZ57650.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192]
          Length = 246

 Score = 43.2 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 42/150 (28%), Gaps = 32/150 (21%)

Query: 1   MATLFIDFETRSPI------------------DLTKCGICKYAE-DVCVILFAFGFDDHP 41
           M ++ +D ET                       LT      Y + D  V   A       
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRHLTGRHFHVYLQPDREVDEGAIAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--------DIPIHR 92
            E   D      +     E +      ++ HN+ F+   +   F L              
Sbjct: 61  NEYLKDKPRFREVANDFFEFIR--GAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCS 118

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL++AR         L A+ +   + +
Sbjct: 119 VLDTLLMARERHPGQRNNLDALCKRYGVDN 148


>gi|170288240|ref|YP_001738478.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2]
 gi|170175743|gb|ACB08795.1| DNA polymerase III, epsilon subunit [Thermotoga sp. RQ2]
          Length = 186

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 42/145 (28%), Gaps = 41/145 (28%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAF------------GFDD------------HP 41
           +D ET         G   +A D  ++  A              F                
Sbjct: 11  VDTETT--------GTDPFAGD-RIVEIAAVPVFKGKIYRNKAFHSLVNPRIRIPALIQK 61

Query: 42  VELWDCVHDPVMPQ--VLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWI 94
           V     +     P    +     +      +V HN+ F+ T L             + +I
Sbjct: 62  VHGISNMDIEEAPDMDAVYNLFRDYVKGTVLVFHNANFDLTFLDMMAKETGNFPITNPYI 121

Query: 95  CTLVLARSN-GLPSALKAVGEALKL 118
            TL L+    G P +LK + E L +
Sbjct: 122 DTLDLSEEIFGRPHSLKWLCERLGI 146


>gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403]
 gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 794

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            +   ++E L ++    VAHN+ F+  +L+  F    L+      + T+ LAR       
Sbjct: 74  EVAAKVRELLTDS--VFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVDLARVFYPTFE 131

Query: 107 -SALKAVGEALKLSSQ 121
              L+++ E L L+  
Sbjct: 132 KYGLESLSEKLDLAHD 147


>gi|257458230|ref|ZP_05623380.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
 gi|257444340|gb|EEV19433.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
          Length = 216

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 42/147 (28%), Gaps = 22/147 (14%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------------DHPVELW--DCVH 49
           +  D ET          +   A        A  ++               V     + + 
Sbjct: 17  IAFDTETTGLDPAAGRIVEIGAVKFDRRGIAARYNVLINPEIPMPEEAGKVNGITDEMLK 76

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
           D  +   +     +      +VAHN+ F+   +             ++ + T + A+   
Sbjct: 77  DKPLIAAVFPDFFDFIGTGVLVAHNAPFDINYINAELKRIGKSPLGNKVVDTRIFAKEVF 136

Query: 105 LPSA---LKAVGEALKLSSQKMEEGKE 128
              +   L+ +     +++ +    ++
Sbjct: 137 PGLSSYALQDLAVQFGITALEAHRAED 163


>gi|212702995|ref|ZP_03311123.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098]
 gi|212673583|gb|EEB34066.1| hypothetical protein DESPIG_01033 [Desulfovibrio piger ATCC 29098]
          Length = 173

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 21/147 (14%)

Query: 2   ATLFIDFET--RSPIDLTKCGICKYAEDVCVILFAFG----------FDDHPVELWDCVH 49
             + +DFET   +       G+C+  +      F +           F       W  + 
Sbjct: 5   RYVALDFETSGYAAHSACAVGLCRIEDGAVTDSF-YSLIRPPSSRVLFTHVHGLTWPLLK 63

Query: 50  DPVMPQVLKEALE---NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
           D      +   L         I+AHN+ F+R VL        L  P   ++CTL  AR +
Sbjct: 64  DAPTFTEVWPQLAAFMEGSRAILAHNAGFDRRVLHASCQALGLVQPQLPFLCTLKGARRS 123

Query: 104 GL--PSALKAVGEALKLSSQKMEEGKE 128
                 AL +V +   +       G +
Sbjct: 124 LPLASRALDSVCDYFGIPLDHHHAGSD 150


>gi|307132624|ref|YP_003884640.1| DNA polymerase II [Dickeya dadantii 3937]
 gi|306530153|gb|ADN00084.1| DNA polymerase II [Dickeya dadantii 3937]
          Length = 790

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 29/205 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF----GFDDHPVELWDCVHDPVMPQVL 57
            T+ +D ET    +L   G+        V +         D   + L      P + + L
Sbjct: 156 KTVSLDIETSRHGELYCIGLEG-CGQRQVFMLGPENGNADDAGDLTLEYVASRPQLLEKL 214

Query: 58  KEALE--NTDVTIVAHNS-YFERTVLKAC---FNLDIPIHRWICTLVLARSNGLPSALKA 111
              L+  + DV  +  N   F+  VL+     + + + + R    +   R +G       
Sbjct: 215 NHWLQTYDPDVI-IGWNLVQFDLRVLQQHAERYRIPLRLGRGGQEMEW-REHGYRQGHFF 272

Query: 112 VGEALKLSSQKMEEGKEL--------IARFCKGETHECLYDRNKPNHREAWRL------- 156
            G   +L    +E  K          +    +    E     N     E           
Sbjct: 273 AGAPGRLIVDGIEALKSATWNFASFSLEFVAQSLLGEGKASDNPYQRLEEIEQRFQQDKP 332

Query: 157 -FGEYCKGDVTVTREIFKRLEPLSS 180
               Y   D  +   IF++   +  
Sbjct: 333 ALARYNLKDCELVTRIFEKTHLMPF 357


>gi|227355430|ref|ZP_03839826.1| ribonuclease D [Proteus mirabilis ATCC 29906]
 gi|227164417|gb|EEI49301.1| ribonuclease D [Proteus mirabilis ATCC 29906]
          Length = 399

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 65/246 (26%), Gaps = 50/246 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T  P      G+ +  +   + L                     P   
Sbjct: 51  QIALDTEFVRIRTYYP----HLGLIQMYDGKQISLI-----------DPLTITEWTP--F 93

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            E L N  V    H    +  V    F         I T V+A   G P +        K
Sbjct: 94  VELLTNPAVLKYLHAGSEDLEVFSHQFG--CVPTPMIDTQVVAAFLGYPISCGFATLVEK 151

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                +++ +       +  T                    +Y  GDV     +    + 
Sbjct: 152 YEHIALDKSESRTDWLARPLT----------------EKQCQYASGDV---FYLLPLAKK 192

Query: 178 LSSKEQELWYLD-------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           L ++ QE  Y+D            R   V   LA+         R +    L+ L    +
Sbjct: 193 LIAQAQEAGYMDAIVDECEMIAERRQETVSPELAYRDIGNAWQLRGQQLACLKMLAEWRL 252

Query: 231 SSSRCL 236
           + +R  
Sbjct: 253 NQARAR 258


>gi|27363618|ref|NP_759146.1| ribonuclease D [Vibrio vulnificus CMCP6]
 gi|27359734|gb|AAO08673.1| ribonuclease D [Vibrio vulnificus CMCP6]
          Length = 390

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 38/140 (27%), Gaps = 18/140 (12%)

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +  V  V H    +  V        IP+   + T ++A   G   +        + 
Sbjct: 87  ELLNDASVMKVLHACGEDLEVFHNALG-AIPV-PMVDTQIMAAFLGHGLSTGFAALVEQY 144

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
            + ++++ +       +  +                    EY   DV     +++ L   
Sbjct: 145 LNVELDKSESRTDWLARPLS----------------DKQLEYAAADVHYLLPLYEILLEK 188

Query: 179 SSKEQELWYLDQTINDRGYC 198
             +        Q    +   
Sbjct: 189 VMEAGWWQAAQQESELQASK 208


>gi|229472233|gb|ACQ72631.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342135|gb|ACY54578.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|313126351|ref|YP_004036621.1| exonuclease [Halogeometricum borinquense DSM 11551]
 gi|312292716|gb|ADQ67176.1| predicted exonuclease [Halogeometricum borinquense DSM 11551]
          Length = 251

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 33/170 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW---DCVHDPVMPQVLK 58
            T F D ET                   V   +F  D     L    D        + L+
Sbjct: 85  DTCFFDIETTGLDS----------AQNDVTTVSFHRDGETTTLVRGHDLTA-----EALR 129

Query: 59  EALENTDVTIVA-HNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           E   +  +  VA  N   F+   L+  F++ I        +   R   L   LK++ +A+
Sbjct: 130 EQFTDAAL--VASFNGKRFDVPFLEDNFDISIDTPHI-DLMYPCRRLDLTGGLKSIEKAV 186

Query: 117 KLSSQK-MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
            +   +    G++ +  + + E              +A      Y + D 
Sbjct: 187 GIDRDRPDLSGRDAVRLWHQYERDG---------DEDALDTLVSYNRDDT 227


>gi|170086167|ref|XP_001874307.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651859|gb|EDR16099.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1064

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 78/296 (26%), Gaps = 79/296 (26%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL--WDCVHDPVMPQVLKEAL 61
           L  D ET     +             V+  A   +   V +  W   H    PQ L    
Sbjct: 125 LTFDVET-----MPNYHPYP------VLACAASLNSWYVWISPWLLGHSDS-PQYLIP-F 171

Query: 62  ENTDVT--IVAHNSYFER-TVLKACFNLDIPIHRWICTLVLA------RSNGLPSALKA- 111
            +  +   IV HN  ++R  +L+    +    +R+I T+ L        S+  P+ +K  
Sbjct: 172 GDPTIPRVIVGHNVSYDRGRILEEYNVVSTK-NRFIDTMALHVAVKGISSHQRPAWMKYR 230

Query: 112 ------------------------VGEALKLSSQKMEEGKELIARFCKGETHE-CLYDRN 146
                                   + E+L  + +     K            +       
Sbjct: 231 KSKQTELEQQQEAIEAVVELLATVMAESLSHTPEVDLSLKRWEDLTSANSLADVAKLHCG 290

Query: 147 KPNHRE---------------AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY---- 187
               ++                   + +YC  DV+VT +++    P              
Sbjct: 291 IDMDKQTRSDFMTSTPKEILNNIADYLDYCSTDVSVTHQVYATALPDFLTACPHPVSFGG 350

Query: 188 --------LDQTINDRGYCVDVALA-HTLNQIVDVERTKLDQELESLTYGLVSSSR 234
                   L        Y          L + V  +  KL ++   L  G     +
Sbjct: 351 ILTMGSSFLTVNEEWDAYLARAEKVYRDLEEGVQNKLKKLAEDARLLMDGKKEEWK 406


>gi|62178662|ref|YP_215079.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62126295|gb|AAX63998.1| DNA polymerase II and and 3' --> 5' exonuclease [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 783

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 63/237 (26%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALEN--TDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                   DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHAPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK                D
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM
           2032]
 gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM
           2032]
          Length = 218

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 28/144 (19%)

Query: 3   TLFIDFETRSPIDLT-----KCGICKYAEDVCVI---------LFAFGFDDHPVELWD-- 46
            + +DFET            + G  +  E   ++          F   +    +      
Sbjct: 6   VIVLDFETTGHSPNRGDRPIEVGAVR-IEHDRIVDRFQALMNPGFTISWFIERLTGISND 64

Query: 47  -CVHD---PVMPQVLKEALENTDVTIVAHNSYFERTVLKA--CFNLDIPIHRWICTLVLA 100
              H      +     + + +  + +VAHN+ F+R  L A          +   CT++ +
Sbjct: 65  LIAHAPPCEEVMNRFADWMGD--LPLVAHNAGFDRAFLDAELALIGRHQSNPMACTVLAS 122

Query: 101 RSN---GLPSALKAVGEALKLSSQ 121
           R          L  +   L + + 
Sbjct: 123 RRLFPESPNHKLATLVNHLGIFTD 146


>gi|262342119|gb|ACY54570.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|260576346|ref|ZP_05844337.1| ribonuclease D [Rhodobacter sp. SW2]
 gi|259021417|gb|EEW24722.1| ribonuclease D [Rhodobacter sp. SW2]
          Length = 385

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 65/280 (23%), Gaps = 61/280 (21%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHDPVM-P 54
            + ID E     T                   + L             L D +  P M  
Sbjct: 22  YVTIDTEFLRERTYWS---------------KLCLIQMALPGKTGRAVLVDPIEGPEMSL 66

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           + L +   +     V H +  +  +       +        T V A   G        GE
Sbjct: 67  EPLYDLFRHQATVKVFHAARQDLEIF--FVEGNSFPEPLFDTQVAAMVCGY-------GE 117

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            +          + L+ +  K    +     +      +     +Y   DVT  R +++ 
Sbjct: 118 QVGY--------ETLVKKIAKENLDKTSRFTDWSRRPLS-EAQSDYALADVTHLRVVYES 168

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT------------KLDQEL 222
           L    +K     ++     +     D A   T  +                   K     
Sbjct: 169 LAAQIAKSGRQKWV---EEELSILTDPATYTTHPEEAWQRVKTRTTSGRFLAVVKELARF 225

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
                   +  R        L     L L     T  + +
Sbjct: 226 REDYAQRNNVPRSRVLKDDAL-----LELASTRPTNAEEL 260


>gi|255953481|ref|XP_002567493.1| Pc21g04470 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589204|emb|CAP95344.1| Pc21g04470 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1240

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 53/201 (26%), Gaps = 22/201 (10%)

Query: 2    ATLFIDFE----TRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
              +  D E      S   + +   + + A +  + LF                   +   
Sbjct: 1036 KVIGFDMEWKAQASSLDSIQSNVSVIQIANEERIALFQIAL------FKPARSLEDLVSP 1089

Query: 57   -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             LK  +E+ DVT V  +   + T L+    +D        T  L+        L   G+ 
Sbjct: 1090 SLKRLVESPDVTKVGVSIKADCTRLRKYLGIDAKA-----TFELSHL----YKLVKYGKD 1140

Query: 116  L-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
               L +++     E I         +    R     R       +Y   D      +F  
Sbjct: 1141 NPNLVNKRGVNLSEQINEHFGLPLEKSDDVRCGDWTRALSYRQVQYAATDPYACVRLFHA 1200

Query: 175  LEPLSSKEQELWYLDQTINDR 195
            +E        +          
Sbjct: 1201 MEAKRQAMDPMPPRPAYAELN 1221


>gi|212532415|ref|XP_002146364.1| 3'-5' exonuclease/helicase (Wrn), putative [Penicillium marneffei
           ATCC 18224]
 gi|210071728|gb|EEA25817.1| 3'-5' exonuclease/helicase (Wrn), putative [Penicillium marneffei
           ATCC 18224]
          Length = 973

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 61/239 (25%), Gaps = 52/239 (21%)

Query: 2   ATLFIDFE------TRSPIDLTKCGICKYAEDVCVILFAFG-FDDHPVELWDCVHDPVMP 54
             L  D E      T S I  +   + + A +  + LF    F  + +         ++P
Sbjct: 736 KLLGFDIEWKPQAQTTSGIK-SNVSLIQIANEERIALFHIALFKGNEIH-------DLVP 787

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             LK  LE+TD   V  +   + + ++   ++         T               +  
Sbjct: 788 PSLKLLLESTDTVKVGVSIKADCSRIRRHLDI--------DT----------RGQFELSH 829

Query: 115 ALKLSSQKMEEGKELIA-----------RFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
             KL      + K +                     +    ++       +    +Y   
Sbjct: 830 LYKLVKYGSTQPKSVNRRAVNLAQQVEELLGLPLRKDSDVRKSDWTKPLDYAQV-QYAAS 888

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
           D      ++  LE        +  L          +       L +    E      EL
Sbjct: 889 DAYACICLYNTLEAKRKALNPIPPLPAFAELNLPIL-------LAEEDKGEIEDEVAEL 940


>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
           MA-4680]
 gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
           avermitilis MA-4680]
          Length = 325

 Score = 43.2 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 16/98 (16%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           D  PV +     D          +       L +    +VAHN+ F+ +++   +     
Sbjct: 65  DPGPVWIHGLTSDVLEGAPLFEDIAAEFASRLAD--RVLVAHNAVFDWSMIAREYARAKS 122

Query: 90  IHRWI---CTLVLARSNGLP---SALKAVGEALKLSSQ 121
                   CT+ L++  GLP     L+++     +  Q
Sbjct: 123 QAPVRQRLCTIALSKELGLPLPNHKLESLAAHFGVVQQ 160


>gi|333018685|gb|EGK37978.1| ribonuclease D [Shigella flexneri K-227]
          Length = 371

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +  +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDTQILAAFCGRPMSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           S   +++ +       +  T                    EY   DV     +T ++   
Sbjct: 122 SGVTLDKSESRTDWLARPLT----------------ERQCEYAVADVWYLLPITAKLMVE 165

Query: 175 LEP--LSSKEQELWYLDQTIND 194
            E         +   L Q    
Sbjct: 166 TEASGWLPAALDECRLMQMRRQ 187


>gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 1444

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 74/255 (29%), Gaps = 19/255 (7%)

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVL 99
           D V      + +    +    D  IV HN+ F+   +    +   N+++    WI TL L
Sbjct: 483 DMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERH-NMEMIQEPWIDTLPL 541

Query: 100 ARSNGLPSA---LKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           AR          L  + + L   L              F      +   ++    H +  
Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEHHHRAIYDAEATGFIYYAMLKDAEEKQILYHDDFN 601

Query: 155 RLFGE---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           +  GE   Y     +    + K  E L +  +           R   V  ++     + +
Sbjct: 602 KHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSESMVKYFYRVPRVPRSILEKYREGL 661

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-RVLSSNKKLT 270
            V     D E+ +       +     K K   +    +  + L E   +  ++  N  L 
Sbjct: 662 IVGSACADGEVFTAMMQKGYTI---AKQKAEFYDYLEVQPKPLYEPLLEQELVKDNDNLE 718

Query: 271 PQAIQVFNNRMRASR 285
                +        +
Sbjct: 719 EIITNMVKLAHELDK 733


>gi|218461184|ref|ZP_03501275.1| DNA polymerase III, epsilon subunit protein [Rhizobium etli Kim 5]
          Length = 240

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 25/140 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGIC-KYAEDVCVI---------------LFAFGFDD-HPVEL 44
            T+ IDFET +    + C +   + E+  VI                         P ++
Sbjct: 46  KTIAIDFETANEQRGSACSVGLAWIEEGRVIRVEERLIRPREMRFSGMNIAIHGIRPEDV 105

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIHRWICTLVLAR 101
            D    P +     +       T++AHN+ F+ +V +A  +L     P   ++C+L +A+
Sbjct: 106 EDAPEFPEVMDEFHDDFR--GATMIAHNAAFDFSVWRASLDLYRQSYPELTYLCSLKMAQ 163

Query: 102 SNGLP---SALKAVGEALKL 118
                     L  + E L L
Sbjct: 164 RIWPHFLSHRLNLIAEHLGL 183


>gi|229472545|gb|ACQ72787.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDVHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|156041228|ref|XP_001587600.1| hypothetical protein SS1G_11593 [Sclerotinia sclerotiorum 1980]
 gi|154695976|gb|EDN95714.1| hypothetical protein SS1G_11593 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1146

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 53/194 (27%), Gaps = 11/194 (5%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   ++S + A  G   V AD+   E
Sbjct: 675 PQVIPMGTVTRRAVENTWLTASNAKKN------RVGSELKSMIKAPPGYCFVGADVDSEE 728

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   ++        T       R   KV      Y
Sbjct: 729 L-WIASLVGDAQFKLHGGNAVGFMTLEGTKAAGTDLHSRTASILGITRNDAKVFNYGRIY 787

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +L+         +  +  +  +   + +          + F+  
Sbjct: 788 GAGLKFASTLLRQFNPSLSESETSETAANLYKATKGVKTNRKALHPGPFWRGGTESFVFN 847

Query: 502 ACERVKKAWRQKHS 515
             E   +  + +  
Sbjct: 848 KLEEFAEQEKPRTP 861


>gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM
           43833]
 gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM
           43833]
          Length = 574

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 45/139 (32%), Gaps = 26/139 (18%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVIL-FAFGFDDHPVE--LWDCVHD------ 50
           +  D ET         +T+ G  K      V   FA   D           +        
Sbjct: 21  VVFDLETTGGSPAEDAITEIGAVKVCG-GQVRGEFATLIDPGRPIPPFISVLTGITDAMV 79

Query: 51  ---PVMPQVLKEALEN-TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN 103
              P +PQVL   LE     T+VAHN+ F+   L+A    +    P +  + T  LAR  
Sbjct: 80  VAAPKLPQVLPAFLEFIRGATLVAHNAPFDLGFLRAACAEYGYPPPANPVVDTADLARRM 139

Query: 104 G-----LPSALKAVGEALK 117
                     L  +    +
Sbjct: 140 LTRDETPDCKLATLARYFR 158


>gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118]
 gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1444

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 74/255 (29%), Gaps = 19/255 (7%)

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVL 99
           D V      + +    +    D  IV HN+ F+   +    +   N+++    WI TL L
Sbjct: 483 DMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERH-NMEMIQEPWIDTLPL 541

Query: 100 ARSNGLPSA---LKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           AR          L  + + L   L              F      +   ++    H +  
Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEHHHRAIYDAEATGFIYYAMLKDAEEKQILYHDDFN 601

Query: 155 RLFGE---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           +  GE   Y     +    + K  E L +  +           R   V  ++     + +
Sbjct: 602 KHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSESMVKYFYRVPRVPRSILEKYREGL 661

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-RVLSSNKKLT 270
            V     D E+ +       +     K K   +    +  + L E   +  ++  N  L 
Sbjct: 662 IVGSACADGEVFTAMMQKGYTI---AKQKAEFYDYLEVQPKPLYEPLLEQELVKDNDNLE 718

Query: 271 PQAIQVFNNRMRASR 285
                +        +
Sbjct: 719 EIITNMVKLAHELDK 733


>gi|134295037|ref|YP_001118772.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
 gi|134138194|gb|ABO53937.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
          Length = 375

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 57  LKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSA 108
           L  AL         VAHN+ F+R  L+A F    L       +CT+ L+R+         
Sbjct: 82  LAPALFERLDGKLFVAHNASFDRGFLRAEFERAGLAFNP-DVLCTVKLSRALFPRESRHG 140

Query: 109 LKAVGEALKL 118
           L A+ E   L
Sbjct: 141 LDALIERYGL 150


>gi|320583448|gb|EFW97661.1| DNA polymerase gamma [Pichia angusta DL-1]
          Length = 1141

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 74/291 (25%), Gaps = 67/291 (23%)

Query: 34  AFGFDDHPVELWDCVHDP--VMPQVLKEA-LENTDVTIVAHNSYFERTVLKACFNLDIPI 90
           A+        +   +      +   L    ++N +  I+ HN  ++R  +   +++    
Sbjct: 168 AYSNRAWYGWVSPYLTGESDTLDGHLIPMNVQNEEKIIIGHNVSYDRARILEEYDITQSK 227

Query: 91  HRWICTLVLARSNGLPSAL--KAVGEALKL-SSQKMEEG--------------KELIA-- 131
             ++ T+ L  +     +       +  K+   +K +EG              KELI   
Sbjct: 228 AFYLDTMSLHVAVSGMCSRQKGKWMKYHKMKDEEKQKEGSLVKFREEVESESLKELIDNP 287

Query: 132 -------------------------------RFCKGETHECLYDRNKPNHREAW----RL 156
                                            C     +   D+    + +      + 
Sbjct: 288 NLDADETLSSFLEDDPWLRTSSLNGLQYVAHHHCGINITKETRDQFSTTNPQEIIENFQK 347

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV---------ALAHTL 207
             EYC  DV  T  +F ++ P   +          +                       +
Sbjct: 348 LMEYCATDVVTTYRVFHKVYPEFRELVPHPVSLAALRHISQSFLPTNEAWEKYITRTEQM 407

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL-ETGLHLEDLTET 257
            Q    +     +++      L            WL   +  +    LT+ 
Sbjct: 408 YQDSVEKIENNLKKMCEQVVSLKDDPSQPWLNDPWLSQLDWTIIPPKLTKK 458



 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 585 RQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPD 638
           ++     T+        +Q+   D   +L   M   +   K    + +TVHDEI      
Sbjct: 831 KKNLHSNTFLPSRINWAIQSSGVDYLHLLVVSMEYLLKRYKVDARLCITVHDEIRYIVKK 890

Query: 639 TDEFNASMLYHL 650
             ++  +M+  +
Sbjct: 891 EQKYKCAMILQI 902


>gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 1446

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 10/78 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP 106
             +     E + ++ +  VAHN+ F+   ++         D      I TL +AR     
Sbjct: 486 EEVLPKFMEFVGDSTM--VAHNAPFDMGFIRRDVKKFMGYDYKPA-VIDTLQMARDLYPE 542

Query: 107 ---SALKAVGEALKLSSQ 121
                LK + + L LS  
Sbjct: 543 LKAYGLKNLNKVLGLSLD 560


>gi|229472307|gb|ACQ72668.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|218289182|ref|ZP_03493418.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240765|gb|EED07944.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 952

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 46/150 (30%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWDCVH-----DPVMP 54
           M  + +DFET               E   ++   A         + D  H     +  +P
Sbjct: 1   MEWIIVDFETTGLEP----------ERAEILEIGALRVRGGE--IVDTFHTLVRPERPIP 48

Query: 55  QVLKEA--LENTDV--------------------TIVAHNSYFERTVL---KACFNLDIP 89
             +     L +TDV                     +  H+  FER+ L    + + L + 
Sbjct: 49  DEITRLTGLSDTDVAGAPSEREALMRFATFAGDTPMAGHHWAFERSFLRDRASRYGLPLQ 108

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEAL 116
               +CTL LAR          L+ +   L
Sbjct: 109 PGDGLCTLNLARILAPRLMSHRLEYLARRL 138


>gi|116694719|ref|YP_728930.1| exconuclease [Ralstonia eutropha H16]
 gi|113529218|emb|CAJ95565.1| Exconuclease [Ralstonia eutropha H16]
          Length = 528

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 22/140 (15%)

Query: 3   TLFIDFETR---------SPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVH 49
            +F+D ET          + I + + G     E   ++                  + V 
Sbjct: 30  IVFVDLETTGADAQRDRITEIGVVEVGPDGIIEWDTLLDPGMSIPPFIQRMTGITEEMVR 89

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNG 104
                + L E+L         VAHN+ F+   LK  F    +       +CT+ L+RS  
Sbjct: 90  GQPSFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFR-ADVLCTVRLSRSLF 148

Query: 105 LP---SALKAVGEALKLSSQ 121
                  L A+     L+ +
Sbjct: 149 PSVERHGLDALIARFGLTPK 168


>gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 1216

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 69  VAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQ 121
           VAHN+ F+   +K       N+D      I TL +AR          L  + + L L+ +
Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARDLFPDLKKYGLGDLNKTLGLALE 562

Query: 122 K 122
           K
Sbjct: 563 K 563


>gi|262342097|gb|ACY54559.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SKFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|229168326|ref|ZP_04296051.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
 gi|228615152|gb|EEK72252.1| DNA polymerase III alpha subunit [Bacillus cereus AH621]
          Length = 318

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 66/245 (26%), Gaps = 27/245 (11%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AF-----GFDDHPVELWDCVH-- 49
             + IDFET         + +    KY     V  F ++        D    L    +  
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGITNYR 71

Query: 50  --DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-- 100
             D    + +            IVAHN+ F+   LK       L  P +  I T+ LA  
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFLAKK 131

Query: 101 RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
              +     L+ +   L +         + I      +    + +  K        +  E
Sbjct: 132 YMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAVEEEGKRKA--NKEVLDE 189

Query: 160 YCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
               +      +  + +           YLD         + V         +  +    
Sbjct: 190 TAVFEAVKEMLVRNKRDIEWIRCMNVGSYLDIKAFYPIIRLKVKGRKKYV--LTEKMEDD 247

Query: 219 DQELE 223
            +E+ 
Sbjct: 248 VREIC 252


>gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
           6725]
          Length = 1402

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 27/140 (19%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVI-LFAFGFDDH----------PVELWD-C 47
           + +D ET         + + G  K  E+  +   F+   D                 D  
Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVK-IENGQITERFSTFVDPEGKIPVRISELTGIYQDMV 449

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              P +   + E     +  V  VAHN+ F+   LK  +    + I  + +I TL L+R 
Sbjct: 450 DKAPKLSDAILEFEKFASGSVL-VAHNAQFDIGFLKKAYQECGI-IFDYTYIDTLELSRR 507

Query: 103 N---GLPSALKAVGEALKLS 119
                    L  V E L + 
Sbjct: 508 LLTDLSSHKLNKVAEFLNIE 527


>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
 gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
          Length = 1433

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 43/144 (29%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKIKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L    +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLAKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
 gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
          Length = 1433

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 43/144 (29%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 416 ETYVVFDVETTGLSA-VYDTVIELAAVKIKGGE--IIDRFESFANPHQPLSATIIELTGI 472

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L    +  I TL 
Sbjct: 473 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLAKTNNPVIDTLE 532

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 533 LARFLFPEMKNHRLNTMCKKLDIE 556


>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
 gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
          Length = 1435

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 43/144 (29%), Gaps = 36/144 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---------------------- 46
           ET    D+   G+     D  + L A         + D                      
Sbjct: 418 ETYVVFDVETTGLSA-VYDTVIELAAVKIKGGE--IIDRFESFANPHQPLSATIIELTGI 474

Query: 47  ----CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
                   P + +V K+  E   D T+VAHN+ F+   +        L    +  I TL 
Sbjct: 475 TDDMLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAGLAKTNNPVIDTLE 534

Query: 99  LARSNGL---PSALKAVGEALKLS 119
           LAR          L  + + L + 
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIE 558


>gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630]
 gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42]
 gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255]
 gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile]
          Length = 1432

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 28/145 (19%)

Query: 2   ATLF-----IDFETRS---PIDLTKCGICKYAEDVCVIL-----------FAFGFDDHPV 42
             L       D ET       D          E+  ++             ++   +   
Sbjct: 412 KELSQTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDRFSELINPEKDISYKIQELTG 471

Query: 43  ELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
              + + D    + +         D  +VAHN+ F+   +        L     +   TL
Sbjct: 472 ITNELIKDKPTIEEVLPKFMEFVGDSVLVAHNAEFDTGFISQKCREQGLLYNNKKV-DTL 530

Query: 98  VLARSNGLP---SALKAVGEALKLS 119
           +LAR          L  V + L + 
Sbjct: 531 MLARVMLPNLKRHRLNVVAKELGIP 555


>gi|12698423|gb|AAK01537.1| DNA polymerase III [Pseudomonas aeruginosa]
          Length = 204

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 13/96 (13%)

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                PV          +   +++ L+      VAHN+  +  V+K     D      I 
Sbjct: 69  SVKGSPVW-------EELRGDVEQQLQ--GKWFVAHNASIDYEVMKRHLP-DWAPVGVID 118

Query: 96  TLVLARSNGL---PSALKAVGEALKLSSQKMEEGKE 128
           TL LAR         +L A+     L S+   E   
Sbjct: 119 TLKLARHVYPDAESHSLSALLAMTGLDSEVSGELHR 154


>gi|187925051|ref|YP_001896693.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
 gi|187716245|gb|ACD17469.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
           PsJN]
          Length = 383

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PS 107
           P++ K          VAHN+ F+R  L+       L       +CT+ L+R+        
Sbjct: 84  PELFKRL---NGKLFVAHNASFDRGFLRGEFRRVGLAFDP-DVLCTVRLSRALFPAEKRH 139

Query: 108 ALKAVGEALKL 118
            L A+ E   L
Sbjct: 140 GLDALVERHAL 150


>gi|157151695|ref|YP_001450717.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157076489|gb|ABV11172.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 824

 Score = 43.2 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 79/294 (26%), Gaps = 58/294 (19%)

Query: 1   MATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
           M    +D E   T S   + + GI    ED  +               D      + + +
Sbjct: 6   MKYAIVDLEATGTGSTAKIIQVGI-VILEDGEI---------KETYQTDINPHEALEEHI 55

Query: 58  KEA--LEN--------------------TDVTIVAHNSYFERTVLKA---CFNLDIPIHR 92
           K+   L +                     D   VAHN  F+  +L         D+ +  
Sbjct: 56  KQLTGLSDQRLSQAPDFSQVAREIYELIEDAVFVAHNVKFDANLLAESLFWEGFDL-LSP 114

Query: 93  WICTLVLARSNGLP---SALKAVGEALKLS-SQKMEEGKELIA---RFCKGETHECLYDR 145
            + T+ LA+          L ++ E L++   Q      + +A    F K +       +
Sbjct: 115 RVDTVELAQVVFPTYEKYGLSSLCELLEIPLEQAHTAISDAMATALLFLKIQEKIQSLPK 174

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIND-------RGYC 198
                         Y          +    E +       W     I         +  C
Sbjct: 175 PLLERLLVLSDSLIYESR-----LVLEDCFEKMPDGRAGDWLDCHGIYLKKQAKLGKERC 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
           +    A  ++ +   ER +  +    +   + +      + +  L    G  L 
Sbjct: 230 LSSDFAKNISLLGLEERPEQQKFASLIEEAMKNPLPNFLQAQAGLGKTYGYLLP 283


>gi|262212201|gb|ACY35717.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R   I + G+ +V ADLAGIE R+L+          A                +   A
Sbjct: 11  RFRELFIPTLGQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R + K +  A  Y  G +           +        +   A  E  D  +  
Sbjct: 64  DKIGISRKLVKTVTYAFLYGAGDEKIGHSHDKPLSSQAAKKKGKEIRQAYIEAIDGLDKL 123

Query: 483 RWMQENHPEHAIEDLFIGTA 502
               +   E        G  
Sbjct: 124 LEAVKKASERGFIKALDGRK 143


>gi|229472177|gb|ACQ72603.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472327|gb|ACQ72678.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472427|gb|ACQ72728.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342091|gb|ACY54556.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342095|gb|ACY54558.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342101|gb|ACY54561.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342121|gb|ACY54571.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342139|gb|ACY54580.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|227111497|ref|ZP_03825153.1| ribonuclease D [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 374

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 41/169 (24%), Gaps = 42/169 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQV 56
            + +D E     T                   + L    +D   + L D        P  
Sbjct: 24  QVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPLTITDWAP-- 65

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  L +  VT   H    +  V    F        +I T +LA   G P +        
Sbjct: 66  FQALLRDEQVTKFLHAGSEDLEVFLNAFG--TLPVPFIDTQILAAFLGKPLSYGFAALVA 123

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                 +++ +       +  +                    +Y   DV
Sbjct: 124 DYMGVTLDKSESRTDWLARPLS----------------EKQCDYAAADV 156


>gi|91784877|ref|YP_560083.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
 gi|91688831|gb|ABE32031.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
          Length = 395

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 55  QVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---P 106
           + +  AL         VAHN+ F+R  L+       L       +CT+ L+R+       
Sbjct: 92  EAIAPALFERLNGKLFVAHNASFDRGFLRGEFRRAGLAFDP-DVLCTVRLSRALFPAEKR 150

Query: 107 SALKAVGEALKL 118
             L A+ E   L
Sbjct: 151 HGLDALVERHTL 162


>gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein
 gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003]
 gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALK 117
               +VAHN+ F+   L+        +   +  + T++L+          +L A+   L 
Sbjct: 590 EGAVLVAHNAPFDLEFLRRKELLIGKNFD-NPVLDTVLLSAVVFGAAEGHSLDALTHRLG 648

Query: 118 L 118
           +
Sbjct: 649 I 649


>gi|87124219|ref|ZP_01080068.1| Exonuclease [Synechococcus sp. RS9917]
 gi|86167791|gb|EAQ69049.1| Exonuclease [Synechococcus sp. RS9917]
          Length = 261

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 22/137 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGF----DDHPVELWD--CVHDPVM 53
           L +D ET          +   A    V    +L    F    + +P +  +         
Sbjct: 34  LILDTETSGLDPEQDQCLEVGAILFDVPEREVLVQQSFLLPVEHNPAQAINHIAASATRC 93

Query: 54  PQVLKE------ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV-----LARS 102
           PQ  +E      AL +T   +VAH++ F+R       +L      W+CT+          
Sbjct: 94  PQPWREGLRYLQALMDTADLLVAHHAAFDRQWFGR-GHLPAARAAWLCTMDDIRWPAELQ 152

Query: 103 NGLPSALKAVGEALKLS 119
                +++ +  A  + 
Sbjct: 153 LRPRPSVRDLALAHGIP 169


>gi|329847376|ref|ZP_08262404.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
 gi|328842439|gb|EGF92008.1| DNA polymerase III, epsilon subunit [Asticcacaulis biprosthecum
           C19]
          Length = 229

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 11/106 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLAR--SNGL 105
            +   L E + +  +  +AHN+ F+R      ++    +  P  +WI TL LAR    G+
Sbjct: 73  QIADELCEFIGDKRI--IAHNAAFDRGFINMEMERLSRVCHPDDQWIDTLELARNKFPGM 130

Query: 106 PSALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKP 148
            ++L A+     +S  + +    LI                +R   
Sbjct: 131 ANSLDALCRRFNISLAERDLHGALIDARLLASVYLELLGGKERGLD 176


>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1446

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 46/169 (27%), Gaps = 26/169 (15%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILF-AF---------------GFDDHPV 42
            +  D ET         L +    K      +  F ++                  D  V
Sbjct: 426 YVVFDVETTGLSAERDRLIEIAAVKVKNGAEIDSFESYINPERPISELITRLTSITDDDV 485

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVL 99
              D   +  +       L+  D+  VAHN+ F+   +        L+   +  I TL +
Sbjct: 486 R--DAPVEKEVMTDFYNWLDEDDIL-VAHNAKFDLGFIDKSFERLGLENKNNASIDTLFI 542

Query: 100 ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
           +R+    +    +    K+   ++ +    I                  
Sbjct: 543 SRAENKEAKRHGLSNLAKMYKVRLVQHHRAIYDTKATAEIFIKMLNQLY 591


>gi|304311305|ref|YP_003810903.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1]
 gi|301797038|emb|CBL45251.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1]
          Length = 246

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 30/147 (20%)

Query: 2   ATLFIDFETRSP----------------IDLTKCG--ICKYAEDVCVI-LFAFGFDDHPV 42
             + +D ET                   +D    G    +Y     ++   A        
Sbjct: 5   RQIVLDTETTGLEPAEGHRIIEIGCVELVDRRHTGRHYHQYINPERLVDAGAMAVHGITN 64

Query: 43  ELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV------LKACFNLDIPIHRWIC 95
           E   D      +     E +      +V HN+ F+         L   F         + 
Sbjct: 65  EFLADKPKFAEIADAFFEFIN--GAELVIHNAAFDVGFINHEFNLLKRFGTVGEHCSVLD 122

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSS 120
           TL++AR         L A+    ++ +
Sbjct: 123 TLLMARKKHPGQKNNLDALCRRYEIDN 149


>gi|125624796|ref|YP_001033279.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493604|emb|CAL98589.1| Probable ATP-dependent helicase dinG homolog [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071596|gb|ADJ60996.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 791

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            +   +++ L ++    VAHN+ F+  +L+  F    L+      + T+ LAR       
Sbjct: 71  EVASEVRKLLTDS--VFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVDLARVFYPTFE 128

Query: 107 -SALKAVGEALKLSSQ 121
              L+A+ E L L+  
Sbjct: 129 KYGLEALSEKLDLAHD 144


>gi|68074103|ref|XP_678966.1| exonuclease [Plasmodium berghei strain ANKA]
 gi|56499594|emb|CAI04586.1| exonuclease, putative [Plasmodium berghei]
          Length = 406

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 64/225 (28%), Gaps = 33/225 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-------ELWDCVHDPVMP 54
             + +DFE           + +Y     + L     +            ++D ++   + 
Sbjct: 103 DIIAVDFE--------GTNLGRY---GKICLMQIYTEIEKKDKVFEKYYIFDLLN-KSVI 150

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
             +K+ +EN     V H+   + + L      DI       TL              + +
Sbjct: 151 NSVKKIIENKKTLKVIHDCREDSSALYNQL--DIKFENVYDTLRAHMLLLEKKKENDIYQ 208

Query: 115 --ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
              L L    +    + +    K           +P  + +      Y   +V     I+
Sbjct: 209 ISFLNLLHDYLGFKDDCLNNIKKEMYKNERIWEIRPLSKISI----IYALKNVKYLLPIY 264

Query: 173 KRL------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           K        + +  K ++        +     VD+A    + + +
Sbjct: 265 KIFDKLISKKEVLEKSKDFVNYCFLNSRYKLPVDLAKRGNIIEAM 309


>gi|321452163|gb|EFX63618.1| hypothetical protein DAPPUDRAFT_335271 [Daphnia pulex]
          Length = 1122

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 56/225 (24%), Gaps = 49/225 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            LF DFET          +  Y                           ++   +     
Sbjct: 445 ILFFDFETYKGN------MQHYLPF-----MCSAIGGSGDLYCWLYKSELLSDQVVS-FG 492

Query: 63  NTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGL---------------- 105
           +     + HNS  ++R  +K  +  +    R + T+                        
Sbjct: 493 DAVKLYIGHNSVAYDRRFVKEFYEFNHD-KRMLDTMSFYYVLYGMSGTQTKIYDSLKRLE 551

Query: 106 ----------PSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                     P+ LK +   L  +   K    K+L     K         +      E  
Sbjct: 552 HAPTWTKHTCPANLKDLANFLCGIKLDKD--IKDLWVTKKKEAP------KPFSVITENL 603

Query: 155 RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                Y   D   T E++K+     +K   L YL   +      +
Sbjct: 604 NDIWRYAVMDTYATLEVYKKEYAEIAKFPSLIYLVGQLERSTQMI 648


>gi|260906565|ref|ZP_05914887.1| putative ribonuclease D [Brevibacterium linens BL2]
          Length = 384

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 39/148 (26%), Gaps = 25/148 (16%)

Query: 50  DPVMPQVLKEALENT--DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LP 106
           D  +   L   L +       V H+   +   L+      +       T + AR  G   
Sbjct: 64  DSEVLADLSP-LNDAFAGAEWVIHSVTQDLPCLQE---RGMQPEVLFDTELAARMLGWEK 119

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             L AV E              L  R  K  +      R  P      + +  Y   DV 
Sbjct: 120 FGLAAVAER------------TLGVRLAKEHSAADWSKRPLP------KEWLNYAALDVE 161

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTIND 194
           V   I   L     +  +  +  Q    
Sbjct: 162 VLLPIRDILHEALIEADKWEFARQEFEH 189


>gi|253688324|ref|YP_003017514.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754902|gb|ACT12978.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 374

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 41/169 (24%), Gaps = 42/169 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQV 56
            + +D E     T                   + L    +D   + L D        P  
Sbjct: 24  QVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPLTITDWAP-- 65

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  L +  VT   H    +  V    F        +I T +LA   G P +        
Sbjct: 66  FQALLRDEQVTKFLHAGSEDLEVFLNAFG--TLPVPFIDTQILAAFLGKPLSYGFAALVA 123

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                 +++ +       +  +                    +Y   DV
Sbjct: 124 DYMGVTLDKSESRTDWLARPLS----------------EKQCDYAAADV 156


>gi|288549963|ref|ZP_05968783.2| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288316782|gb|EFC55720.1| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 246

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVVNRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACF---NLDI 88
                  + D  +    K    +             +V HN+ F+   +   F   N DI
Sbjct: 64  EAFGVHGIADEFLLD--KPTFADVADEFLEYIKGAELVIHNASFDIGFMDYEFSKLNRDI 121

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTNTFCKVTDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLD 170


>gi|213163418|ref|ZP_03349128.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 296

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 11/100 (11%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDERQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR 92
                 + DV  +  N   F+  +L+     + + + + R
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKYAERYRIPLRLGR 248


>gi|83644404|ref|YP_432839.1| DNA polymerase II [Hahella chejuensis KCTC 2396]
 gi|83632447|gb|ABC28414.1| DNA polymerase II [Hahella chejuensis KCTC 2396]
          Length = 839

 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 59/221 (26%), Gaps = 66/221 (29%)

Query: 2   ATLFIDFETRSP-IDLTKCGICKYAEDV---------CVILFAFGFDDHPVELWDCVHDP 51
             L +D ET      L   G+   +             V +     +D P  L  C  + 
Sbjct: 175 KVLSLDIETSMDGAQLYSIGLAATSYGADVGAGAMQHRVFMVGENAEDSPDYLVYCADES 234

Query: 52  VMPQVLKEALE--NTDVTIVAHN-SYFERTVLKA-------------------------- 82
            + +   E  +  + D+  +  N   F+   L+                           
Sbjct: 235 EVFRRFVEWFDGFDPDIL-IGWNVINFDLRFLQKKADELNFPFHPGRGGAAMDWRQSRSD 293

Query: 83  --CFNLDIPIHRW---ICTLVLARSNGLPSALKAVGEAL----KLSSQKMEEGKELIARF 133
              F L IP       I TL  A  N    +L+ V + L    KL       G E+   F
Sbjct: 294 DQHFTLCIPGRVVLDGIDTLKSATYNFESFSLEYVAQHLLGRGKLIHDPDNRGDEITHLF 353

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              +                      Y   D  +  EIF+ 
Sbjct: 354 LHDKP-----------------RLAAYNLEDCQLVWEIFQH 377


>gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07]
 gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07]
          Length = 1432

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 28/145 (19%)

Query: 2   ATLF-----IDFETRS---PIDLTKCGICKYAEDVCVIL-----------FAFGFDDHPV 42
             L       D ET       D          E+  ++             ++   +   
Sbjct: 412 KELSQTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDRFSELINPEKDISYKIQELTG 471

Query: 43  ELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
              + + D    + +         D  +VAHN+ F+   +        L     +   TL
Sbjct: 472 ITNELIKDKPTIEEVLPKFMEFVGDSVLVAHNAEFDTGFISQKCREQGLLYNNKKV-DTL 530

Query: 98  VLARSNGLP---SALKAVGEALKLS 119
           +LAR          L  V + L + 
Sbjct: 531 MLARVMLPNLKRHRLNVVAKELGIP 555


>gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 704

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALK 117
               +VAHN+ F+   L+        +   +  + T++L+          +L A+   L 
Sbjct: 590 EGAVLVAHNAPFDLEFLRRKELLIGKNFD-NPVLDTVLLSAVVFGAAEGHSLDALTHRLG 648

Query: 118 L 118
           +
Sbjct: 649 I 649


>gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM
           43017]
 gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Saccharomonospora viridis DSM 43017]
          Length = 570

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 64/182 (35%), Gaps = 28/182 (15%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVIL-FAFGFDDH---PVELWDCV------- 48
           + +D ET         +T+ G  K      V+  FA   D     P ++           
Sbjct: 18  VVVDLETTGVTPDGAGITEIGAVK-VRGGEVVGEFATLVDPGVPIPPQIVALTGITPAMV 76

Query: 49  -HDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA-RS 102
              P + QVL   LE  +   +VAHN+ F+ + LKA       + P    +CTL LA R 
Sbjct: 77  RSAPRIEQVLPTFLEFVSGAVLVAHNAGFDVSFLKAACQTHGYEWPKPTVVCTLKLARRV 136

Query: 103 NG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
            G        L  +       ++   + + L       +    L +R  P   ++     
Sbjct: 137 LGRQETRGHRLSTLASLFG--ARSTPKHRALDDAKATVDVLHGLLERVGPLGVQSLEELL 194

Query: 159 EY 160
           +Y
Sbjct: 195 DY 196


>gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63]
          Length = 1432

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 28/145 (19%)

Query: 2   ATLF-----IDFETRS---PIDLTKCGICKYAEDVCVIL-----------FAFGFDDHPV 42
             L       D ET       D          E+  ++             ++   +   
Sbjct: 412 KELSQTFVVFDIETTGFSNTNDKITEIGAVKIENFKIVDRFSELINPEKDISYKIQELTG 471

Query: 43  ELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTL 97
              + + D    + +         D  +VAHN+ F+   +        L     +   TL
Sbjct: 472 ITNELIKDKPTIEEVLPKFMEFVGDSVLVAHNAEFDTGFISQKCREQGLLYNNKKV-DTL 530

Query: 98  VLARSNGLP---SALKAVGEALKLS 119
           +LAR          L  V + L + 
Sbjct: 531 MLARVMLPNLKRHRLNVVAKELGIP 555


>gi|322713115|gb|EFZ04686.1| Gifsy-1 prophage RegQ [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 783

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 68/237 (28%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLN 209

Query: 59  EALEN--TDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                   DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFAEHAPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK +     + +  +  + 
Sbjct: 269 ARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKSIDNPCDRMDEIDRRFA 322

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           ++KP           Y   D  +   IF + E +         L +     G  VD 
Sbjct: 323 QDKP-------ALATYNLKDCELVTRIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
 gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
          Length = 1438

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 83/305 (27%), Gaps = 41/305 (13%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRW 93
            +D  V+  D      + +       +    +VAHN+ F+   ++       L    +  
Sbjct: 475 INDEMVK--DAPDVEPVMKEFVAFAGDA--VLVAHNARFDVGFIQATLRNMGLPEMTNPV 530

Query: 94  ICTLVLARSNGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
           + TL LAR          L  +    K++   +E     I               +    
Sbjct: 531 LDTLELARLLFPTMKNHRLNTLTTKYKVA---LESHHRAIDDTVALTEVLNGLLNDAEQI 587

Query: 151 R--EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ-----TINDRGYCVDVAL 203
           +  +      +Y   D++  R     +  L+   ++  Y            R  C+  + 
Sbjct: 588 KGLKMLDRLNDYVGKDLSTVRPFHCCIYALNPIGKKNLYKLVSMSHTEYFKRVPCIPKSK 647

Query: 204 AHTLN------------QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
              +             +  +    K ++E E +             +   L  +  +  
Sbjct: 648 LSEMRDGLLIISGCEKGEFFEAVLNKSEEEAEEIAQFYDVLEIQPLTMYMHLVEKQLVSG 707

Query: 252 EDLTETTCQRVLS--SNKKLTPQAIQVFNNRMRASRSA-------VLKLNTLVEAMNSDG 302
            D  +T  ++V            A    +      +         +   + L +    D 
Sbjct: 708 PDALKTAIRKVCEIGRRLDKPVIATGNVHYLETRDKLYRDITIHGITGFSPLKDIRKPDA 767

Query: 303 RLRGT 307
            LR T
Sbjct: 768 HLRTT 772


>gi|315126186|ref|YP_004068189.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
 gi|315014700|gb|ADT68038.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
          Length = 237

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 37/162 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF---------------AFGFDDHPVELWD 46
             + +D ET       K G  +  E  CV L                    ++  +++  
Sbjct: 4   RQIVLDTETTGIDP--KQG-HRIIEIGCVELMNRRLTGNNFHVYINPQRSIEEEAIDVHG 60

Query: 47  CVHD--------PVMPQVLKEALENTDVTIVAHNSYFER-------TVLKACFNLDIPIH 91
             ++          + Q   + +++ ++  V HN+ F+         +L   +       
Sbjct: 61  ITNEFLRDKPLFRDIAQEFFDYIKDAEL--VIHNAPFDIGHMDNEFALLNQGYQNTHDFC 118

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             + TL +AR         L A+     + + K      L+ 
Sbjct: 119 GVLDTLKMARDLHPGQKNNLDALCRRYDVDNTKRTLHGALLD 160


>gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810]
          Length = 255

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 48/187 (25%), Gaps = 33/187 (17%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALENTDVTI-VA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +      VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKP 148
             TL +AR         L A+ E L + + K      L+                     
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185

Query: 149 NHREAWR 155
                  
Sbjct: 186 EESVESE 192


>gi|31793853|ref|NP_856346.1| hypothetical protein Mb2700 [Mycobacterium bovis AF2122/97]
 gi|121638556|ref|YP_978780.1| hypothetical protein BCG_2694 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224991048|ref|YP_002645737.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|31619447|emb|CAD94885.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium bovis
           AF2122/97]
 gi|121494204|emb|CAL72682.1| Conserved hypothetical alanine rich protein [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|224774163|dbj|BAH26969.1| hypothetical alanine rich protein [Mycobacterium bovis BCG str.
           Tokyo 172]
          Length = 438

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 24/183 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHN 72
           +D  +    +Y+    +I      +   V +    H      VL    E  +    + H+
Sbjct: 56  VDAERASGFRYSGRAYLIQIRRA-EAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHS 114

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L     + +       T +  R  G     L A+ E L               
Sbjct: 115 ADQDLPCLAE---VGMRPPALYDTELAGRLAGFDRVNLAAMVERL--------------- 156

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                       D +K     AW     Y   DV +  E+   +  + +++ +  +  Q 
Sbjct: 157 LGLGLTKGHGAADWSKRPLPSAW---LNYAALDVELLIELRAVISRVLAEQGKTDWAAQE 213

Query: 192 IND 194
              
Sbjct: 214 FEH 216


>gi|261346344|ref|ZP_05973988.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM
           4541]
 gi|282565658|gb|EFB71193.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM
           4541]
          Length = 253

 Score = 42.8 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+     +  +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHYEGHN--IIEIG-AVEVINRRLTGRNFHVYIKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-LKEALENTDVTIV------AHNSYFERTVLK---ACFNLDIPI 90
                  + D  +    +   + +  +  +       HN+ F+   +       N  IP 
Sbjct: 61  EAFGVHGISDEFLQDKPVFAEIADEFIEFIRGAELIIHNAPFDIGFMDYEFRKLNRGIPP 120

Query: 91  H----RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                    +LVLAR         L A+ +   + + K      L+ 
Sbjct: 121 TAEFCSITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLD 167


>gi|323495336|ref|ZP_08100414.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323310407|gb|EGA63593.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 245

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 11/98 (11%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-------DIPIHRWIC 95
            L D      +     E +      +VAHN+ F+   +   F +        +   +   
Sbjct: 77  FLVDKPDYRDVHAEFLEFI--KGAELVAHNAPFDVGFMDHEFGMLDPSIGKTVDYCKVTD 134

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           TL +A+         L  + +   + +        L+ 
Sbjct: 135 TLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLD 172


>gi|313843978|ref|YP_004061641.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599363|gb|ADQ91385.1| hypothetical protein OlV1_008c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 447

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 37/132 (28%)

Query: 1   MATLFIDFETR---------------------------SPIDLTKCGICKYAEDVCVILF 33
           M  +  DFET                            S    ++ G      D  +   
Sbjct: 5   MNYIAFDFETSGLPRGRRNTKVTHETLSNFDGCRAVSLSAARFSQRGRLIKTFDAIIRPD 64

Query: 34  AFGFDDHPVELWDCVH------DPVMPQVLKEALEN---TDVTIVAHNSYFERTVL-KAC 83
            F   +  + +    +          P+V ++ +E       T+VAHN+ F+ +VL    
Sbjct: 65  GFQIGEESIAIHGISNEKALSEGRPFPEVYRDFMEFIGPRTKTLVAHNAQFDTSVLQSEM 124

Query: 84  FNLDIPIHRWIC 95
               IP+ +   
Sbjct: 125 LRHGIPLEQIDD 136


>gi|294868076|ref|XP_002765369.1| hypothetical protein Pmar_PMAR002368 [Perkinsus marinus ATCC 50983]
 gi|239865388|gb|EEQ98086.1| hypothetical protein Pmar_PMAR002368 [Perkinsus marinus ATCC 50983]
          Length = 1005

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 61/199 (30%), Gaps = 33/199 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKEAL 61
            + +D    S   + +  +        ++  A   +   V L D       +   +   +
Sbjct: 470 IIGLD----SEWSIFRLVLDPGCNQADLVQLATSDN---VYLVDIYAGEEGLIDEIGRLV 522

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIP-----IHRWICTLVLARSNGLPSALKAVGEAL 116
           E+ ++ +V      +  VL++             HR +              L  + +  
Sbjct: 523 ESNNIIVVGFGIAGDLRVLRSSGMEGTRGGVSSPHRIVD-------------LNDLVDGY 569

Query: 117 KLSSQKMEEGK-----ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            L S+K          E++  F      + +   N      ++R   EY   D  V  + 
Sbjct: 570 -LPSRKGSSKHQRGLTEVVKYFLGKPLSKVMRLSNWRRRPLSYRQV-EYASLDAIVLLKC 627

Query: 172 FKRLEPLSSKEQELWYLDQ 190
            ++++       +LW  D 
Sbjct: 628 IEKIQSSIDPSLDLWNTDA 646


>gi|152986464|ref|YP_001348839.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7]
 gi|150961622|gb|ABR83647.1| DNA polymerase III, epsilon subunit [Pseudomonas aeruginosa PA7]
          Length = 246

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 42/150 (28%), Gaps = 32/150 (21%)

Query: 1   MATLFIDFETRSPI------------------DLTKCGICKYAE-DVCVILFAFGFDDHP 41
           M ++ +D ET                       LT      Y + D  V   A       
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPDREVDEGAIAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--------DIPIHR 92
            E   D      +     E +      ++ HN+ F+   +   F L              
Sbjct: 61  NEYLKDKPRFREVANDFFEFIR--GAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCT 118

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL++AR         L A+ +   + +
Sbjct: 119 VLDTLLMARERHPGQRNNLDALCKRYGVDN 148


>gi|116049766|ref|YP_791427.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584987|gb|ABJ11002.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 246

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 32/150 (21%)

Query: 1   MATLFIDFETRSPI------------------DLTKCGICKYAE-DVCVILFAFGFDDHP 41
           M ++ +D ET                       LT      Y + D  V   A       
Sbjct: 1   MRSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPDREVDEGAIAVHGIT 60

Query: 42  VELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-------- 92
            E   D      +     E +      ++ HN+ F+   +   F L     R        
Sbjct: 61  NEYLKDKPRFREVANDFFEFIR--GAQLIIHNAAFDIGFINNEFALLGQQDRSDVSEYCS 118

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL++AR         L A+ +   + +
Sbjct: 119 VLDTLLMARERHPGQRNNLDALCKRYGVDN 148


>gi|260063099|ref|YP_003196179.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
 gi|88784668|gb|EAR15838.1| hypothetical protein RB2501_15959 [Robiginitalea biformata
           HTCC2501]
          Length = 375

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 58/218 (26%), Gaps = 63/218 (28%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVE--LWDCVHDPVMPQVL 57
           M    +D ET            K+ E+  +   A   FD H V       ++     Q  
Sbjct: 1   MTYAVLDIETTG---------GKFDEEG-ITEIAIHRFDGHEVVDTFISLINPERPIQPY 50

Query: 58  KEALE--NTD----------VTI-----------VAHNSYFERTVLK---ACFNLDIPIH 91
            + L   +            V             VAHN+ F+  +L+        +    
Sbjct: 51  VQKLTGIDPKMVQTAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYNFE-R 109

Query: 92  RWICTLVLARSNGL---PSALKAVGEALKLS--------SQKMEEGKELIARFCKGETHE 140
           + +CT+ L++         +L  +  +L +            +   K L     +     
Sbjct: 110 KTLCTVDLSQRLIPDAESHSLGKLVRSLGIPVSNRHRANGDALATLKLLQHLLDRDTGKT 169

Query: 141 CLYD------------RNKPNHREAWRLFGEYCKGDVT 166
              +            R      EA    G Y   D  
Sbjct: 170 ITSEVIRAETLGELSNRQLRFVEEAPDSVGVYYLYDKD 207


>gi|116512711|ref|YP_811618.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108365|gb|ABJ73505.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
          Length = 791

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            +   +++ L ++    VAHN+ F+  +L+  F    L+      + T+ LAR       
Sbjct: 71  EVASEVRKLLTDS--VFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVDLARVFYPTFE 128

Query: 107 -SALKAVGEALKLSSQ 121
              L+A+ E L L+  
Sbjct: 129 KYGLEALSEKLDLAHD 144


>gi|282880819|ref|ZP_06289515.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305353|gb|EFA97417.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 183

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 21/138 (15%)

Query: 4   LFIDFETRSPIDLTKCGICK-YAEDVCVI-----LF-----AFGFDDHPVELW---DCVH 49
           + IDFET +    + C       +D  ++     L      A+ + +  +      D  +
Sbjct: 7   IAIDFETATGKRASVCEAGICVVKDGKIVETKSWLIRPEDNAYSYWNIQIHGIHPEDTEN 66

Query: 50  DPVMPQVLKEALE--NTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN- 103
            P  P V +E L        +VAHN+ F+ + ++     ++LD     + CTL  AR + 
Sbjct: 67  APSFPCVWQEILTYLKETPILVAHNAAFDISCIRKSLELYHLDTLDVDYYCTLRAARHHY 126

Query: 104 GLP-SALKAVGEALKLSS 120
                 L  + E  ++  
Sbjct: 127 DFECHTLGYLCEQFEIPE 144


>gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22]
 gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
           [Streptomyces scabiei 87.22]
          Length = 613

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 16/124 (12%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--- 86
           D  PV +     D          +   +   L  +   +VAHN+ F+   L   F     
Sbjct: 63  DPGPVHVHGLTADRLAGAPAFEEIAPQVGALL--SSRVLVAHNAQFDYDFLAHEFAQVRS 120

Query: 87  DIPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
             P+ R +CTL L R  G       L  +     +  +K  + ++ +             
Sbjct: 121 WAPVSRRLCTLALNRLVGPATPDLKLGTLAAHYGVRQEKAHDAQDDVRVLSGILRGSLSA 180

Query: 144 DRNK 147
               
Sbjct: 181 AEQL 184


>gi|320011539|gb|ADW06389.1| DNA polymerase III, epsilon subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 346

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 24/138 (17%)

Query: 6   IDFETRSPI-DLTKCGICKYAEDVC-------VILFAFGFDDHPVELWDCVHD------- 50
           +D ET     D        Y  D           L     D  PV +     D       
Sbjct: 35  VDVETTGLARDDRIISAAVYRLDARGDVEDHWYTLVNPERDPGPVWIHGLTSDVLEGAPL 94

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP 106
            P +   L E L      +VAHN+ F+ +++   +    +  P+ + +CT+ LA+   LP
Sbjct: 95  FPQVAAELSERLA--GRVLVAHNAAFDWSMIAREYARAAVTAPVEQRLCTIALAKELRLP 152

Query: 107 ---SALKAVGEALKLSSQ 121
                L+++     +  Q
Sbjct: 153 LPNHKLESLAAHFGVVQQ 170


>gi|229472205|gb|ACQ72617.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYAGILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|183601084|ref|ZP_02962577.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
 gi|188019425|gb|EDU57465.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
          Length = 253

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 49/167 (29%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+     +  +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHYEGHN--IIEIG-AVEVINRRLTGRNFHVYIKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-LKEALENTDVTIV------AHNSYFERTVLKACF---NLDIPI 90
                  + D  +    +   + +  +  +       HN+ F+   +   F   N DIP 
Sbjct: 61  EAFEVHGISDEFLQDKPVFADIADEFIEFIRGAELIIHNAPFDIGFMDYEFSKLNKDIPP 120

Query: 91  H----RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                +   +LV+AR         L A+ +   + + K      L+ 
Sbjct: 121 TADFCQITDSLVMARQIFPGKRNNLDALCDRYLIDNTKRTLHGALLD 167


>gi|168490899|ref|ZP_02715042.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC0288-04]
 gi|221231602|ref|YP_002510754.1| exonuclease [Streptococcus pneumoniae ATCC 700669]
 gi|225854318|ref|YP_002735830.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae JJA]
 gi|183574742|gb|EDT95270.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC0288-04]
 gi|220674062|emb|CAR68575.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669]
 gi|225723482|gb|ACO19335.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae JJA]
          Length = 816

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPFSLIQAPTGIGKTYGYLLPALSQS 288


>gi|168037523|ref|XP_001771253.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677494|gb|EDQ63964.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 188

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 45/151 (29%), Gaps = 24/151 (15%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDI 88
            + L      +    +   ++   +P  L   L++  +         +   LK  + L+ 
Sbjct: 54  KIALLQIC-GEDDCLIVQMLYLDSIPTELVNFLKDPSIKFPGVGIKGDALKLKRDWGLEC 112

Query: 89  PIHRWIC-TLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
                I  T + A   G P    + LK++ +              ++           + 
Sbjct: 113 NGA--IDLTTLAASVLGRPELKAAGLKSLAKV-------------VMDYDMAKPKRVTMS 157

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
           +          ++  EY   D  V+  I ++
Sbjct: 158 NWA---KPILDKVQVEYASLDAWVSYAIHQK 185


>gi|16272104|ref|NP_438306.1| DNA polymerase III subunit epsilon [Haemophilus influenzae Rd KW20]
 gi|1169396|sp|P43745|DPO3E_HAEIN RecName: Full=DNA polymerase III subunit epsilon
 gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae
           Rd KW20]
          Length = 256

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     P  P  +K  
Sbjct: 6   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVH 65

Query: 59  ----EALEN-TDVTIVA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +  +   VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ + L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|314936410|ref|ZP_07843757.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655029|gb|EFS18774.1| putative DnaQ family exonuclease/DinG family helicase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 905

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 92/296 (31%), Gaps = 43/296 (14%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL----VL----- 99
            +   + E L++     VAHN  F+   +K  F   N+     + + TL    +      
Sbjct: 73  EIADDIYEQLKD--CIFVAHNVDFDLNFIKKAFEKSNIHFKPKKVLDTLELFKIAFPTEK 130

Query: 100 ARSNGLPSALKA--VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN-------- 149
           +      +      +  A +           +I  F K E+      +            
Sbjct: 131 SYQLSELANAHNIPLTNAHRADEDATTTAYLMIKAFKKFESLPIDTLKQLYYLSKHLKYD 190

Query: 150 -HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                + +  ++   D+      + + E +  K+Q+   + Q I  +G   D+ L  T  
Sbjct: 191 LFNILFEMVRQHHNHDIDYQ---YAQFEQIIYKKQQDLKVPQ-IEFKGSLKDLYLEVTTA 246

Query: 209 QIVDVE------RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTC 259
             +            + ++L      L+ +     K   +L      ++E       +T 
Sbjct: 247 LELTYRPQQLYLSEIILEQLMHNDKALIEAPLGSGKSLAYLLAALMYNIETGRHVMISTN 306

Query: 260 QRVLSS--NKKLTPQAIQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQF 310
            ++L     +K  P   +  + ++     +S    ++  L+  +  D      +  
Sbjct: 307 TKLLQHQLLQKDIPSINRALDFKINAALIKSKTDYISLGLISQILKDDTANYEVNI 362


>gi|254430147|ref|ZP_05043850.1| exonuclease [Cyanobium sp. PCC 7001]
 gi|197624600|gb|EDY37159.1| exonuclease [Cyanobium sp. PCC 7001]
          Length = 292

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 26/139 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGF----DDHPVELWD--CVHDPVM 53
           L +D ET          +   A    V    +L    F     ++P E  +        +
Sbjct: 66  LILDTETTGLDPEQDHCLEVGAILFHVPSRAVLSQISFLLPVRENPAEAINGIAAATTRL 125

Query: 54  PQVLK------EALENTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTL--V---LA 100
           PQ  +      EA+      ++AHN+ F+R         ++P     WIC++  +     
Sbjct: 126 PQPWRQGLSCFEAMAADADAVLAHNAAFDRQWFGR---GELPALGAPWICSMEDIRWPAE 182

Query: 101 RSNGLPSALKAVGEALKLS 119
           R      +++ +  A  + 
Sbjct: 183 RGLRPNPSVRDLALAYGVP 201


>gi|197285028|ref|YP_002150900.1| ribonuclease D [Proteus mirabilis HI4320]
 gi|194682515|emb|CAR42495.1| ribonuclease D [Proteus mirabilis HI4320]
          Length = 372

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 65/246 (26%), Gaps = 50/246 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T  P      G+ +  +   + L                     P   
Sbjct: 24  QIALDTEFVRIRTYYP----HLGLIQMYDGKQISLI-----------DPLTITEWTP--F 66

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
            E L N  V    H    +  V    F         I T V+A   G P +        K
Sbjct: 67  VELLTNPAVLKYLHAGSEDLEVFSHQFG--CVPTPMIDTQVVAAFLGYPISCGFATLVEK 124

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                +++ +       +  T                    +Y  GDV     +    + 
Sbjct: 125 YEHIALDKSESRTDWLARPLT----------------EKQCQYASGDV---FYLLPLAKK 165

Query: 178 LSSKEQELWYLD-------QTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
           L ++ QE  Y+D            R   V   LA+         R +    L+ L    +
Sbjct: 166 LIAQAQEAGYMDAIVDECEMIAERRQETVSPELAYRDIGNAWQLRGQQLACLKMLAEWRL 225

Query: 231 SSSRCL 236
           + +R  
Sbjct: 226 NQARAR 231


>gi|17537597|ref|NP_496592.1| hypothetical protein Y57A10A.15 [Caenorhabditis elegans]
 gi|6433820|emb|CAB60771.1| C. elegans protein Y57A10A.15, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1072

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 101/344 (29%), Gaps = 56/344 (16%)

Query: 338 ELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQW 397
            + +   H      ++     +I   +++ V A  G +LV AD+   E + LA + G+  
Sbjct: 648 TISRRSVHKLWVTLTNQSTGHVIGTGIKAMVQAPAGYRLVGADVDSQE-QWLAALYGDAS 706

Query: 398 ------------KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGG- 444
                          AF         +     +   A   K  R   KV+  A  Y  G 
Sbjct: 707 AEKRLPLEKRVAGKTAFSNMMLAGSKSDNTDLHSVVASQLKISRNHAKVLNYARLYGSGE 766

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIG--TA 502
             A + +    GL  +             + + A+     ++ N       +  +     
Sbjct: 767 THAGKHLMRVGGLKQSEAESTASQLFKLTKGDVAKYMKVDVRMNCVVDKYIEEMVENSDV 826

Query: 503 CERV-KKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
           C+ +         +  S+  +E  +  +  + +  +++        L+Y   +  +    
Sbjct: 827 CKILTIDGIYYMPAYTSQFASETVRFEDWLLSHYSSLLNGSSEPDSLIYSIYENPDEP-- 884

Query: 562 LPSGRSLVYRDVGNN--RSYLNTTTRQLTREYT-------------------------YG 594
               R L      ++       +      R                            Y 
Sbjct: 885 ----RRLFVGGYESSTFNFLETSAAAHDLRTPILGCQIADSLGKLPEGTPDSAYFDRKYK 940

Query: 595 GKLTENIVQAVSRDIL------AEGMMNATKAGYDIVLTVHDEI 632
             +   IVQ+ + D L       + + +  K     V+++HDE+
Sbjct: 941 RSVMNWIVQSSAVDFLHLLLVSMQWLCDTYKIDARFVISIHDEV 984



 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 60/226 (26%), Gaps = 55/226 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW---DCVHDPVMPQ---- 55
            LF D E                 D  +   A          W     +++  +P+    
Sbjct: 138 ILFFDIE-------------LVVRDGTLPTLAIALGRDAWYGWCSDRLIYESEIPEIPTK 184

Query: 56  -VLKEALENT-DVTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
             L    E   +  I+ HN  F+R    +A  +++    R++ T+ ++        +   
Sbjct: 185 ADLIPIGEIGMEKVIIGHNVGFDRARCREAYQSINGSKIRFMDTMSMS---IPMYGMADH 241

Query: 113 GEAL---------------------KLSSQKMEEGKE-LIARFCKGETHECLYDRNKPNH 150
            ++L                     ++S   +    + L                     
Sbjct: 242 QQSLYEMYDVETNDSHSDWMNAWKGRVSKNSLVAVHDHLYPDKAINAEGFSKKTMRASFV 301

Query: 151 REAWRLFGE-------YCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
           ++      E       YC  D  +  EI+ RL P   K        
Sbjct: 302 KDPIEQIREDFQPLMSYCARDNILCAEIYFRLWPEFIKRFPHPATL 347


>gi|116687265|ref|YP_840511.1| exonuclease, RNase T and DNA polymerase III [Burkholderia
           cenocepacia HI2424]
 gi|116652980|gb|ABK13618.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
           cenocepacia HI2424]
          Length = 293

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 33/118 (27%), Gaps = 33/118 (27%)

Query: 4   LFIDFETRSP--------------------IDLTKCGICKYAEDVCVILFAFG-FDDHPV 42
           LFID ET                         L K  +   A    +           P 
Sbjct: 130 LFIDTETTGLDHQAAIVEIAILDRAGAVLIDTLVKPAMPIPAAATEIHGITDADVAGAPA 189

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTL 97
                   P + ++L          ++AHN  F+  +L        + +P  R  CT+
Sbjct: 190 W---NTIGPQVAELL------AGRLLIAHNGAFDERLLYQTSRSHGVTLPALRVECTM 238


>gi|117923346|ref|YP_863963.1| DNA polymerase III subunit epsilon [Magnetococcus sp. MC-1]
 gi|117607102|gb|ABK42557.1| DNA polymerase III, epsilon subunit [Magnetococcus sp. MC-1]
          Length = 237

 Score = 42.8 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 36/149 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW---------------- 45
             + +D ET       K G  +  E  CV L      D                      
Sbjct: 3   RLIVLDTETTGFDP--KEG-HRIIEIGCVELVNMRKGDERQWYVNPEREIPADATKVHGI 59

Query: 46  ---DCVHDPVMPQVLKEAL----ENTDVTIVAHNSYFERTVLKACF-----NLDIPIHRW 93
              D  + P   ++  E L    E++   +V HN+ F+   L A        L +P+ R 
Sbjct: 60  TDADVANSPKFKEIYHEFLAFIGEDS---LVIHNAEFDMRFLNAELTRLNKRLVMPMERA 116

Query: 94  ICTLVLARSN--GLPSALKAVGEALKLSS 120
           I T+ LAR    G    L A+ + L + +
Sbjct: 117 IDTIPLARRKFPGSTVNLDALCKRLGVDN 145


>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
 gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
           27064]
          Length = 334

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 20/133 (15%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHDPVMPQVL 57
           +D ET        +    + +      V      L     D  PV +     D +    L
Sbjct: 23  VDVETTGLARDDRIVSAAVYRLDARGEVEDHWYTLVNPERDPGPVWIHGLTSDVLAGAPL 82

Query: 58  KEALENT------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + +          +VAHN+ F+ +++   +       P  + +CT+ LA+   LP  
Sbjct: 83  FQDIADEFSQRLDGRVLVAHNAMFDWSMIAREYARARRTAPTRQRLCTIALAKELRLPLP 142

Query: 107 -SALKAVGEALKL 118
              L+++     +
Sbjct: 143 NHKLESLAAHFGV 155


>gi|298675626|ref|YP_003727376.1| DNA polymerase Pol2 [Methanohalobium evestigatum Z-7303]
 gi|298288614|gb|ADI74580.1| DNA polymerase Pol2 [Methanohalobium evestigatum Z-7303]
          Length = 913

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 48/215 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-------------------PV 42
             L  D E      L   G     E   +I+ +  F+                      +
Sbjct: 176 KYLAFDIE-----CLPPEGGMPEPESSPIIMISLSFEPEYKGNNTLVLVCKNLKDVESDI 230

Query: 43  ELWDCVHDPVMPQVLKEALE--NTDVTIVAHNSY-FERTVLK------ACFNLDIPIHRW 93
           E++D   +  M     +  +  + DV +V +N   F+   +K            I     
Sbjct: 231 EIFD--EEEDMLTRFFDIFQEYDPDV-VVGYNMNDFDIPYIKDRADYLNNKGASIVPRVG 287

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKME-EGKELIARFCKGETHECLYDRNKPNHR- 151
               ++         + ++   + + +  +  +   L     +  + E L          
Sbjct: 288 RDGRLMTYRRLGTRTMVSMTGRIVMDTLPLIRQQFSLKRYTLRNVSKELLGREKLDVEPH 347

Query: 152 ----------EAWRLFGEYCKGDVTVTREIFKRLE 176
                     E  + F +Y + D  +  E+  +L+
Sbjct: 348 QMVEYWNDGGEKTKKFIDYARRDSELALELVTKLQ 382


>gi|296160037|ref|ZP_06842857.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
 gi|295889783|gb|EFG69581.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
          Length = 383

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 55  QVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---P 106
           + +  AL         VAHN+ F+R  L+       L       +CT+ L+R+       
Sbjct: 80  EAIAPALFERLNGKLFVAHNASFDRGFLRGEFRRVGLAFDP-DVLCTVRLSRALFPAEKR 138

Query: 107 SALKAVGEALKL 118
             L A+ E   L
Sbjct: 139 HGLDALVERHTL 150


>gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
 gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_27]
          Length = 1449

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 69  VAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQ 121
           VAHN+ F+   +K       N+D      I TL +AR          L  + + L L+ +
Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARDLFPDLKKYGLGDLNKTLGLALE 562

Query: 122 K 122
           K
Sbjct: 563 K 563


>gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
 gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Fusobacterium sp. 3_1_36A2]
          Length = 1449

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 69  VAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQ 121
           VAHN+ F+   +K       N+D      I TL +AR          L  + + L L+ +
Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARDLFPDLKKYGLGDLNKTLGLALE 562

Query: 122 K 122
           K
Sbjct: 563 K 563


>gi|223995113|ref|XP_002287240.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976356|gb|EED94683.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 743

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 10/85 (11%)

Query: 43  ELWDCVHD---PVMPQVLKEALENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLV 98
            + D +       +P  L     +  +  + H     + T L   F + I       T  
Sbjct: 336 YVIDPLAPNVWDAIPHYLGPLFSDPRIVKIGHGIGGMDTTSLHRDFGIVI--VNAFDTFE 393

Query: 99  LARSN----GLPSALKAVGEALKLS 119
            +            L  + +   L 
Sbjct: 394 ASAVLLHGKKGGLGLAKLCKHYGLP 418


>gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
 gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
          Length = 256

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 48/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALENTDVTI-VA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +      VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ E L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLD 165


>gi|88601936|ref|YP_502114.1| exonuclease [Methanospirillum hungatei JF-1]
 gi|88187398|gb|ABD40395.1| Exonuclease [Methanospirillum hungatei JF-1]
          Length = 215

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 34/131 (25%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-------------ELWDC 47
           M  L  D E+       K           ++  A+   D                 +   
Sbjct: 1   MKYLIFDTESTGLPREEKDPFHYPEYWPRMVQLAWILTDGETIITEENYLIYPDGFVIPS 60

Query: 48  V----HD---PVMPQVLKEALE-----NTDVT----IVAHNSYFERTVL-----KACFNL 86
                H        +  K  LE     +  +     +V HN  F+R+++     +A  N 
Sbjct: 61  SSMEIHGITNERAREEGKPVLEVLSVFSESIKQADVLVGHNVSFDRSIVTSEYSRAKLNA 120

Query: 87  DIPIHRWICTL 97
            I    + CT+
Sbjct: 121 PILKLPYHCTM 131


>gi|91785922|ref|YP_546874.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
 gi|91695147|gb|ABE41976.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
          Length = 203

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 46/155 (29%), Gaps = 47/155 (30%)

Query: 1   MATLF-IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMP 54
           M  +  IDFET          +   A +V ++L     +   V   D           +P
Sbjct: 1   MKPIAVIDFETTGLSP----AMGDRATEVAIVL----VEGGRV--VDRFQSLMNAGVRIP 50

Query: 55  QVL-----------------KEALENTDV-----TIVAHNSYFERTV----LKACFNLDI 88
             +                    + + +       +VAHN+ F+R      L      + 
Sbjct: 51  AFITSLTGITNAMVASAPDAATVMTDANRFVGNAPLVAHNASFDRKFWEAELSRAG--ER 108

Query: 89  PIHRWICTLVLARSN---GLPSALKAVGEALKLSS 120
               + CT++++R          L  + +   L  
Sbjct: 109 ASQPFACTMLVSRRLYPQAPSHKLGVLVDYHHLPK 143


>gi|66394984|ref|YP_240953.1| ORF035 [Staphylococcus phage G1]
 gi|62637006|gb|AAX92117.1| ORF035 [Staphylococcus phage G1]
 gi|182627947|gb|ACB89109.1| gp ORF116 [Staphylococcus phage A5W]
          Length = 290

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 19/79 (24%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----------VHDPVMPQ 55
           D ET S     K G          ++ +  + +                        + +
Sbjct: 220 DLETNSLKP-DKEGSKP-------LVLSLSWRNGQGVTIPLYKSDFNWENGQDDIDEVLE 271

Query: 56  VLKEALENTDVTIVAHNSY 74
           +LK  L + +   VAHN  
Sbjct: 272 LLKNWLASKEDIKVAHNGK 290


>gi|262342089|gb|ACY54555.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R    AS G  +  ADL+G+E R+LA          A   G            +   A
Sbjct: 11  RFRELFTASPGMVMCGADLSGVELRMLAHYL-------AKHDGGKYADILLNGDIHQVNA 63

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
                 R+  K +  A  Y  G +           +    A   +   A  E  +  +  
Sbjct: 64  DKIGISRSAVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKAKGKEIKQAYIEAIEGLDKL 123

Query: 483 RWMQENHPEHAIEDLFIGTA 502
               ++  E           
Sbjct: 124 LADVKSASERGFIRAIDQRK 143


>gi|110805789|ref|YP_689309.1| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401]
 gi|110615337|gb|ABF04004.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 220

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSLLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRCVL------PEMPGEWICTMKLARRLWPGLKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|327473768|gb|EGF19186.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK408]
          Length = 814

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 73/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCHGIFLRRPQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER++  +    +   L        + +T L    G  L 
Sbjct: 242 GLEERSEQLRFARFMEEALDQQEPSFLEAQTGLGKTFGYLLP 283


>gi|302346700|ref|YP_003814998.1| 3'-5' exonuclease [Prevotella melaninogenica ATCC 25845]
 gi|302150614|gb|ADK96875.1| 3'-5' exonuclease [Prevotella melaninogenica ATCC 25845]
          Length = 217

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID ETR    + K G  +      V L      DH V     ++   +P+ +K  L
Sbjct: 46  DIIGIDTETR---PVFKKGQRR-----KVALLQAC--DHEVCFLFRLNLIGVPECIKRFL 95

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+T V  V  +   +  +L     LD     +I              L+   ++L +   
Sbjct: 96  EDTTVPKVGLSLGDDMLML--HQRLDFKPGYFID-------------LQDYVKSLGIEDM 140

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            +++    +      E        +   +         Y   D     ++++RL  
Sbjct: 141 SLQKLYANV----FHERITKREQLSNWENEILSDKQKIYASTDAWTCIKLYERLHE 192


>gi|170782038|ref|YP_001710370.1| putative ribonuclease [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156606|emb|CAQ01757.1| putative ribonuclease [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 443

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 24/113 (21%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE 114
            L E + +  V  V H +  +   L+    + +   R   T + +R  GLP   L  V E
Sbjct: 113 ELDEVIRD--VEWVLHAASQDLACLRE---VGLDPQRIFDTELASRLLGLPRVGLGTVVE 167

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
            L            L     K  +      R  P      R +  Y   DV +
Sbjct: 168 EL------------LGIHLAKEHSAADWSTRPLP------RAWLVYAALDVEL 202


>gi|58337027|ref|YP_193612.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227903590|ref|ZP_04021395.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58254344|gb|AAV42581.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868477|gb|EEJ75898.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 177

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------LFAFGFDDHPVELW---DC 47
           M  + +DFET +    + C +      +  ++            F   +  V      D 
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNNKIVDRFYTVINPQMPFDARNIQVHQITAEDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHNS F+  V++     +N++ P +  I TL  ++ 
Sbjct: 61  KNAPTMAEVWPKIKGLYQPGMLVAAHNSRFDTNVMRQSLARYNIEEPHYLVIDTLATSKL 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V +AL + 
Sbjct: 121 FEPELPNHKLDTVSDALNVE 140


>gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1449

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 69  VAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQ 121
           VAHN+ F+   +K       N+D      I TL +AR          L  + + L L+ +
Sbjct: 504 VAHNAPFDMGFIKRDIKKYLNIDYQ-CSVIDTLQMARDLFPDLKKYGLGDLNKTLGLALE 562

Query: 122 K 122
           K
Sbjct: 563 K 563


>gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
           27560]
 gi|149734600|gb|EDM50517.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC
           27560]
          Length = 1474

 Score = 42.8 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 25/140 (17%)

Query: 2   ATLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDDH--------------PVE 43
             +  D ET         + + G  K      +  F+   +                   
Sbjct: 408 RYVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDRFSTFVNPEIPIPFRIEKLTSINDEM 467

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH-RWICTLVLAR 101
           + D      +     E  +++   +VAHNS F+ + +   C   D+      I T+ ++R
Sbjct: 468 VIDAPKIEEILPQFMEFCKDS--VMVAHNSDFDMSFIEANCKRQDLECDFTVIDTVAMSR 525

Query: 102 SNGLP---SALKAVGEALKL 118
              +      L  V +AL +
Sbjct: 526 YLIIGLGRYKLDNVAKALGI 545


>gi|119475072|ref|ZP_01615425.1| DNA polymerase II [marine gamma proteobacterium HTCC2143]
 gi|119451275|gb|EAW32508.1| DNA polymerase II [marine gamma proteobacterium HTCC2143]
          Length = 788

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 6/86 (6%)

Query: 2   ATLFIDFETRSPI-DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV-MPQVLKE 59
            T+ +D ET      L   G+    +     L     D    +  +   D   +     +
Sbjct: 155 KTISLDIETAMDNITLYSIGLYGREKGEDYRLVLMVSDHWIADDVEFFADEKSLLLRFFD 214

Query: 60  ALE--NTDVTIVAHNS-YFERTVLKA 82
            L   + D+  +  N   F+   L+ 
Sbjct: 215 WLSDYDPDII-IGWNIVNFDMWFLER 239


>gi|71065393|ref|YP_264120.1| bifunctional ribonuclease HI/DNA polymerase III, epsilon subunit
           [Psychrobacter arcticus 273-4]
 gi|71038378|gb|AAZ18686.1| bifunctional protein: Ribonuclease HI and DNA polymerase III,
           epsilon subunit [Psychrobacter arcticus 273-4]
          Length = 527

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 31/148 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK--- 58
             L +D ET     L      +  E   V +    F    + ++      +  +V++   
Sbjct: 302 RQLIMDTETTGLDPLKG---DRIIEVGIVEMIGRKFTGEKLHVYINPQRGMDEEVIRIHG 358

Query: 59  ---EALENT---------------DVTIVAHNSYFERTVL----KACFNLDI-PIHRWIC 95
                L +                   I+AHN+ F+   L          D     R   
Sbjct: 359 ISEAFLTDKPTFDQVAQSLYDFMDGAEIIAHNASFDMNFLNMEFAKVGMHDFAERVRVTD 418

Query: 96  TLVLA--RSNGLPSALKAVGEALKLSSQ 121
           +LV+A  +  G  + L A+   L +  Q
Sbjct: 419 SLVMAKQQYPGQKNTLDALVRRLDVGKQ 446


>gi|260061120|ref|YP_003194200.1| hypothetical protein RB2501_05965 [Robiginitalea biformata
           HTCC2501]
 gi|88785252|gb|EAR16421.1| hypothetical protein RB2501_05965 [Robiginitalea biformata
           HTCC2501]
          Length = 239

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 31/137 (22%)

Query: 57  LKEALENTDVTIVAHNSY-FERTVLKACF---NLDIPI-------HRWI----CTLVLAR 101
           L+E   ++   + AHN   F+   L        + +P          W      T+ L +
Sbjct: 102 LEEHFSSSGKMLCAHNGKEFDFPYLARRMLIHGIPLPPSLNLFGKKPWEIPHLDTMELWK 161

Query: 102 SNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                   +L+ +   L + S K                 +    R+     +      +
Sbjct: 162 FGDFKHYTSLRLMAHVLGIPSPKD--------------DIDGSMVRDVYYEEQDLDRITQ 207

Query: 160 YCKGDVTVTREIFKRLE 176
           YC+ DV    ++F RL 
Sbjct: 208 YCERDVVTVAQVFLRLR 224


>gi|331696705|ref|YP_004332944.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190]
 gi|326951394|gb|AEA25091.1| 3'-5' exonuclease [Pseudonocardia dioxanivorans CB1190]
          Length = 394

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 42/150 (28%), Gaps = 27/150 (18%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                D      L  AL   +   V H +  +   L     + +       T +  R  G
Sbjct: 68  IPLGSD---LSALSPALTGPE--WVLHAASQDLPCLAE---VGLAPTSLFDTELAGRLAG 119

Query: 105 LPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
           LP   L  + E L                    E      D ++    E W     Y   
Sbjct: 120 LPRVGLGPMVEQL---------------LGLALEKGHGAADWSRRPLPEDW---LVYAAL 161

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTIN 193
           DV V  E+   L  + +++ +  +  Q   
Sbjct: 162 DVEVLIELRDLLAGMLAEQGKSEFAAQEFE 191


>gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 1402

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 27/140 (19%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVI-LFAFGFDDH----------PVELWD-C 47
           + +D ET         + + G  K  E+  +   F+   D                 D  
Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVK-IENGQITERFSTFVDPEGKIPVRISELTGIYQDMV 449

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              P +   + E     +  V  VAHN+ F+   LK  +    + I  + +I TL L+R 
Sbjct: 450 DKAPKLSDAILEFERFASGSVL-VAHNAQFDIGFLKKAYQECGI-IFDYTYIDTLELSRR 507

Query: 103 N---GLPSALKAVGEALKLS 119
                    L  V E L + 
Sbjct: 508 LLTDLSSHKLNKVAEFLNVE 527


>gi|289739467|gb|ADD18481.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
          Length = 349

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 23/183 (12%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           V L      +    L+   H   +P+ LK  L + ++  V  N   +   L+   +  I 
Sbjct: 68  VALLQLASPNGFCGLFRLCHMDHIPESLKNLLADKEIIKVGVNPAEDARKLQ--GDYGIY 125

Query: 90  IHRWICT-LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
           +        + A     P  L+ +  +L            L   F K      +   N  
Sbjct: 126 VASTFDIRYLAAMIRCKPLGLEKLSRSL------------LNVDFVKPW---YIARSNWE 170

Query: 149 NHREAWRLFGEYCKGD----VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
             +       EY   D    V + + +  RL+P + +           +   Y +D+  +
Sbjct: 171 FDKLDDDQV-EYAANDAFAGVEIFKHLANRLKPRNYRNFTNTDFIAIKSKIEYLLDLDFS 229

Query: 205 HTL 207
             +
Sbjct: 230 ENI 232


>gi|306846211|ref|ZP_07478773.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
 gi|306273462|gb|EFM55323.1| DNA polymerase III subunit epsilon [Brucella sp. BO1]
          Length = 332

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+  F++      W C
Sbjct: 134 TDEMVKGRTIPRDELDALIAGADIIIAHNAGFDRPFLER-FSIAFANKPWAC 184


>gi|145509024|ref|XP_001440456.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407673|emb|CAK73059.1| unnamed protein product [Paramecium tetraurelia]
          Length = 733

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 17/97 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV----HDPVMPQVLK 58
            + +D E                 D  + +     DD  V + D +     +  +  V K
Sbjct: 59  IIGVDIE----------HTNDIGFDGQISIVQIK-DDEDVYIIDVIEIGVDNQKLINVFK 107

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           +  E+  +  V +    +   LK  F + I    +  
Sbjct: 108 QIFEDDKIIKVFYAGSTDVLWLKRDFQITIQ--NFFD 142


>gi|296876164|ref|ZP_06900218.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432875|gb|EFH18668.1| ATP-dependent DNA helicase; DNA polymerase III, epsilon subunit
           [Streptococcus parasanguinis ATCC 15912]
          Length = 817

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 71/266 (26%), Gaps = 32/266 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         ++   R   T+ L++       
Sbjct: 74  QVAKEIFELIEDA--VFVAHNVKFDANLLAEALFWEGFELTTPRI-DTVELSQIFYPTLE 130

Query: 107 -SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY- 160
              L A+   L++        + +         K         R       +      Y 
Sbjct: 131 RYNLGALAAELEIELHHAHSALADAMATAQLLLKLREKIASLPRGLIEKLLSMADCLIYE 190

Query: 161 -------CKGDVTVTR-----EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                     D ++       E+         +  E  +L +        + +       
Sbjct: 191 SRLLIEDALEDSSLFLPAHLVEVHGLYLRKPQQFLESRHLSEQFELNMQLLGME----AY 246

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS--N 266
                    ++  L+      + +   + K   +L        + +  +   ++L     
Sbjct: 247 PEQREFVAYIEDSLQQPLPSFIEAPTGIGKTYAYLLTLLAKTSKSILVSVPTKILQDQIM 306

Query: 267 KKLTPQAIQVFNNRMRASRSAVLKLN 292
           KK       +F     + +S    + 
Sbjct: 307 KKEGKTIQDLFQIPFHSLKSPKDYIQ 332


>gi|54302908|ref|YP_132901.1| putative DNA polymerase III [Photobacterium profundum SS9]
 gi|46916332|emb|CAG23101.1| putative DNA polymerase III [Photobacterium profundum SS9]
          Length = 214

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 22/141 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKY----AEDVCVI---------LFAFG--FDDHPVELWDC 47
            + +DFET            +      E+  V+          F      + +     + 
Sbjct: 15  VIVLDFETTGLSPTQGDRAIEIGAVLMENGEVVDRFQKLMNPGFRVSSFIESYTGITNNM 74

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL--DIPIHRWICTLVLARSN 103
           +        + +   +   D  +VAHN+ F++  L A  ++        + C++++AR  
Sbjct: 75  LRTAAPCDEVMDQFTDFIGDYNLVAHNASFDKRFLDAELDIINRSYGGEFACSMLIARRL 134

Query: 104 ---GLPSALKAVGEALKLSSQ 121
                   L ++     +   
Sbjct: 135 YQNAPNHKLGSLVAYKNIDHD 155


>gi|302902991|ref|XP_003048764.1| hypothetical protein NECHADRAFT_105050 [Nectria haematococca mpVI
           77-13-4]
 gi|256729698|gb|EEU43051.1| hypothetical protein NECHADRAFT_105050 [Nectria haematococca mpVI
           77-13-4]
          Length = 1143

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 11/196 (5%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ V A +G   V AD+   E
Sbjct: 671 PQIIPMGTITRRAVENTWLTASNAKKN------RVGSELKAMVKAPKGYCFVGADVDSQE 724

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   +S        T       R   KV      Y
Sbjct: 725 L-WIASLVGDATFKLHGGNAVGFMTLEGTKSQGTDLHSRTASILGISRNNAKVFNYGRIY 783

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +L+        +      +  +   + + +        + F+  
Sbjct: 784 GAGLKFAATLLRQFNPDLSERQTTETASRLYANTKGTKTNRKILYKRPFWRGGTESFVFN 843

Query: 502 ACERVKKAWRQKHSRV 517
             E   +  R +   +
Sbjct: 844 KLEEFAEQERPRTPAL 859


>gi|213021700|ref|ZP_03336147.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213612768|ref|ZP_03370594.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 164

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 43/160 (26%), Gaps = 47/160 (29%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFNL---DI 88
                  + D  +    K    +             +V HN+ F+   +   F L   DI
Sbjct: 64  EAFGVHGIADEFLLD--KPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDI 121

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQK 122
           P          +L LAR        +L A+    ++ + K
Sbjct: 122 PKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSK 161


>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
 gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1435

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 22/139 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCVI-----------LFAFGFDDHPVELWDCV 48
            +  D ET     +    I   A   +D  +I             +    +      D +
Sbjct: 420 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFTSFANPHHPLSITTIELTGITDDML 479

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
            D    + +     +   D  +VAHN+ F+   L   F    L    +  I TL LAR  
Sbjct: 480 KDAPDVEEVLRQFYDWMGDSILVAHNASFDIGFLNVGFTKLGLGKVTNPVIDTLELARFL 539

Query: 104 GL---PSALKAVGEALKLS 119
                   L  + +   + 
Sbjct: 540 YPELKNHRLNTLCKKFDIE 558


>gi|254457641|ref|ZP_05071069.1| exonuclease [Campylobacterales bacterium GD 1]
 gi|207086433|gb|EDZ63717.1| exonuclease [Campylobacterales bacterium GD 1]
          Length = 231

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 50/183 (27%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-PVELWDCVHDPVMP-------- 54
           +F+D ET    ++ +            I   +  D               +P        
Sbjct: 3   IFLDVETTGLEEIDRVCS---------IGIVWSEDGENRTIYELVNEGKKIPSLASSINH 53

Query: 55  ---QVLK-----------EALE---NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
              ++LK           + L    N D TIV HN  F+  +LK     +  I   I T 
Sbjct: 54  ITNEMLKGKPKFQESEAYKLLTQHNNEDTTIVGHNIKFDLAMLKK-SGFNF-IGEIIDT- 110

Query: 98  VLARSNGLPSALKAVGEA-----LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                  +   L +  E      L+   +  +E KEL+         +    +N   +  
Sbjct: 111 -----LRVTKHLVSECEQFSLQFLRYELKLYKEEKELLQ--AHHALSDATIAKNLYEYLL 163

Query: 153 AWR 155
             +
Sbjct: 164 EIQ 166


>gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma
           citri]
          Length = 1453

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 36/141 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD--------------- 46
             +  D ET         G  +  E   VI+          ++ +               
Sbjct: 409 KYVIFDLETTGL----SSGYDEIIEFGAVIMDGIS---GERQIINHLFKPSVKLSSFTTE 461

Query: 47  --------CVHDPVMPQVLKEALE-NTDVTIVAHNSYFER----TVLKACFNLDIPIHRW 93
                       P   + + + LE   D  ++AHN+ F+     + LK     +I  +  
Sbjct: 462 LTGITDELLADKPTFIESIDQILEYFKDAILIAHNAEFDLGFIQSWLKKAGRSEIN-NTV 520

Query: 94  ICTLVLARSNGLPSALKAVGE 114
           I TL L+R          +G 
Sbjct: 521 IDTLQLSRILEPHLKNYRLGT 541


>gi|194333861|ref|YP_002015721.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM
           271]
 gi|194311679|gb|ACF46074.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM
           271]
          Length = 232

 Score = 42.8 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 31/145 (21%)

Query: 2   ATLFIDFETRSPIDLTK------------CGICKYAEDVCVILFAFGFDDHPVELW---- 45
             +  D ET    DL++             G    ++   V++      D          
Sbjct: 44  RYVVFDTETT-GFDLSRDNVISIGAVAVMNGSIDISDSFEVLIRCDRVGDGDAVSVHGLL 102

Query: 46  --DCV---HDPVMPQVLKEALENTDVTIVAHNSYFER----TVLKACFNLDIPIHRWICT 96
             D V   ++          + ++   +VA ++ F+      +++  +++++ ++  + T
Sbjct: 103 RRDLVGGCNEREALDGFLNYIGDS--ILVAQHAGFDIAMMNAIMRRHYHMEL-LNDVLDT 159

Query: 97  LVLARSN--GLPSALKAVGEALKLS 119
             LA+    G    L       +L 
Sbjct: 160 ASLAKRLEKGPYYNLAHKSGEYRLD 184


>gi|324990933|gb|EGC22868.1| DNA polymerase III, epsilon subunit [Streptococcus sanguinis SK353]
          Length = 814

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 72/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---GAKIIQIGIVLIENGIITKTYETDVNPHEDLDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALLEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCHGIFLRSPQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER +  +    +   L        + +T L    G  L 
Sbjct: 242 GLEERPEQLKFARFMEEALDQQEPSFLEAQTGLGKTFGYLLP 283


>gi|308232210|ref|ZP_07664029.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu001]
 gi|308371097|ref|ZP_07667091.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu003]
 gi|308374662|ref|ZP_07667838.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu006]
 gi|308375511|ref|ZP_07668042.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu007]
 gi|308378065|ref|ZP_07668659.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu009]
 gi|308379281|ref|ZP_07668932.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu010]
 gi|308380440|ref|ZP_07669197.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu011]
 gi|308214618|gb|EFO74017.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu001]
 gi|308329844|gb|EFP18695.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu003]
 gi|308341104|gb|EFP29955.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu006]
 gi|308346112|gb|EFP34963.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu007]
 gi|308353627|gb|EFP42478.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu009]
 gi|308357474|gb|EFP46325.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu010]
 gi|308361428|gb|EFP50279.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu011]
          Length = 468

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 24/183 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHN 72
           +D  +    +Y+    +I      +   V +    H      VL    E  +    + H+
Sbjct: 86  VDAERASGFRYSGRAYLIQIRRA-EAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHS 144

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L     + +       T +  R  G     L A+ E L               
Sbjct: 145 ADQDLPCLAE---VGMRPPALYDTELAGRLAGFDRVNLAAMVERL--------------- 186

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                       D +K     AW     Y   DV +  E+   +  + +++ +  +  Q 
Sbjct: 187 LGLGLTKGHGAADWSKRPLPSAW---LNYAALDVELLIELRAAISRVLAEQGKTDWAAQE 243

Query: 192 IND 194
              
Sbjct: 244 FEH 246


>gi|298526151|ref|ZP_07013560.1| 3'-5' exonuclease [Mycobacterium tuberculosis 94_M4241A]
 gi|298495945|gb|EFI31239.1| 3'-5' exonuclease [Mycobacterium tuberculosis 94_M4241A]
          Length = 375

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 24/183 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHN 72
           +D  +    +Y+    +I      +   V +    H      VL    E  +    + H+
Sbjct: 56  VDAERASGFRYSGRAYLIQIRRA-EAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHS 114

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L     + +       T +  R  G     L A+ E L               
Sbjct: 115 ADQDLPCLAE---VGMRPPALYDTELAGRLAGFDRVNLAAMVERL--------------- 156

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                       D +K     AW     Y   DV +  E+   +  + +++ +  +  Q 
Sbjct: 157 LGLGLTKGHGAADWSKRPLPSAW---LNYAALDVELLIELRAAISRVLAEQGKTDWAAQE 213

Query: 192 IND 194
              
Sbjct: 214 FEH 216


>gi|289570857|ref|ZP_06451084.1| conserved alanine rich protein [Mycobacterium tuberculosis T17]
 gi|289544611|gb|EFD48259.1| conserved alanine rich protein [Mycobacterium tuberculosis T17]
          Length = 443

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 24/183 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHN 72
           +D  +    +Y+    +I      +   V +    H      VL    E  +    + H+
Sbjct: 86  VDAERASGFRYSGRAYLIQIRRA-EAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHS 144

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L     + +       T +  R  G     L A+ E L               
Sbjct: 145 ADQDLPCLAE---VGMRPPALYDTELAGRLAGFDRVNLAAMVERL--------------- 186

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                       D +K     AW     Y   DV +  E+   +  + +++ +  +  Q 
Sbjct: 187 LGLGLTKGHGAADWSKRPLPSAW---LNYAALDVELLIELRAAISRVLAEQGKTDWAAQE 243

Query: 192 IND 194
              
Sbjct: 244 FEH 246


>gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
 gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
          Length = 256

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 48/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALENTDVTI-VA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +      VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ E L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLD 165


>gi|219558691|ref|ZP_03537767.1| hypothetical protein MtubT1_15842 [Mycobacterium tuberculosis T17]
          Length = 379

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 24/183 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHN 72
           +D  +    +Y+    +I      +   V +    H      VL    E  +    + H+
Sbjct: 22  VDAERASGFRYSGRAYLIQIRRA-EAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHS 80

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L     + +       T +  R  G     L A+ E L               
Sbjct: 81  ADQDLPCLAE---VGMRPPALYDTELAGRLAGFDRVNLAAMVERL--------------- 122

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                       D +K     AW     Y   DV +  E+   +  + +++ +  +  Q 
Sbjct: 123 LGLGLTKGHGAADWSKRPLPSAW---LNYAALDVELLIELRAAISRVLAEQGKTDWAAQE 179

Query: 192 IND 194
              
Sbjct: 180 FEH 182


>gi|215428107|ref|ZP_03426026.1| hypothetical protein MtubT9_17623 [Mycobacterium tuberculosis T92]
 gi|297635289|ref|ZP_06953069.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN 4207]
          Length = 416

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 24/183 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHN 72
           +D  +    +Y+    +I      +   V +    H      VL    E  +    + H+
Sbjct: 34  VDAERASGFRYSGRAYLIQIRRA-EAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHS 92

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L     + +       T +  R  G     L A+ E L               
Sbjct: 93  ADQDLPCLAE---VGMRPPALYDTELAGRLAGFDRVNLAAMVERL--------------- 134

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                       D +K     AW     Y   DV +  E+   +  + +++ +  +  Q 
Sbjct: 135 LGLGLTKGHGAADWSKRPLPSAW---LNYAALDVELLIELRAAISRVLAEQGKTDWAAQE 191

Query: 192 IND 194
              
Sbjct: 192 FEH 194


>gi|170726953|ref|YP_001760979.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908]
 gi|169812300|gb|ACA86884.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908]
          Length = 242

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIH-------RWICTLV 98
             H P   +V +  +E      IVAHN+ F+ + +   F+L  P+          + TL 
Sbjct: 76  VAHKPKFAEVAQSFIEFIDGAEIVAHNANFDVSFMDHEFSLLQPVGPKTADICPILDTLE 135

Query: 99  LARSNGLPS--ALKAVGEALKLSS 120
           +A+         L A+ +   + +
Sbjct: 136 IAKFLHPGQKNNLDALCKRYGIDN 159


>gi|94502173|ref|ZP_01308671.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
 gi|94425698|gb|EAT10708.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
          Length = 237

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 34/149 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
           M  + +D ET    D       +  E  CV L            +      V P+ ++  
Sbjct: 1   MRQVVLDTETTGIGD-----GHRIIEIGCVELVGRKLTGRHYHQYINPQREVDPEAMEVH 55

Query: 59  ----EALENTDV---------------TIVAHNSYFERTVL------KACFNLDIPIHRW 93
               E L +  V                +V HN+ F+   +       + F     +   
Sbjct: 56  GITDEFLADKPVFAQVANEFLDFINGAELVIHNAPFDVGFMDMEFAKLSNFPKTAEVCGV 115

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSS 120
           + TL LAR        +L A+   L + +
Sbjct: 116 LDTLTLARKMYPGQRNSLDALCRRLGIDN 144


>gi|15609818|ref|NP_217197.1| hypothetical protein Rv2681 [Mycobacterium tuberculosis H37Rv]
 gi|15842219|ref|NP_337256.1| ribonuclease D, putative [Mycobacterium tuberculosis CDC1551]
 gi|148662522|ref|YP_001284045.1| putative ribonuclease D [Mycobacterium tuberculosis H37Ra]
 gi|148823871|ref|YP_001288625.1| hypothetical protein TBFG_12696 [Mycobacterium tuberculosis F11]
 gi|253798237|ref|YP_003031238.1| hypothetical protein TBMG_01292 [Mycobacterium tuberculosis KZN
           1435]
 gi|254232787|ref|ZP_04926114.1| conserved hypothetical alanine rich protein [Mycobacterium
           tuberculosis C]
 gi|254365342|ref|ZP_04981387.1| conserved hypothetical alanine rich protein [Mycobacterium
           tuberculosis str. Haarlem]
 gi|289444223|ref|ZP_06433967.1| conserved alanine rich protein [Mycobacterium tuberculosis T46]
 gi|289448336|ref|ZP_06438080.1| conserved alanine rich protein [Mycobacterium tuberculosis CPHL_A]
 gi|289553533|ref|ZP_06442743.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 605]
 gi|289575379|ref|ZP_06455606.1| conserved alanine rich protein [Mycobacterium tuberculosis K85]
 gi|289746482|ref|ZP_06505860.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289751333|ref|ZP_06510711.1| conserved alanine rich protein [Mycobacterium tuberculosis T92]
 gi|289754783|ref|ZP_06514161.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308369826|ref|ZP_07419200.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu002]
 gi|308372367|ref|ZP_07428406.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu004]
 gi|308373474|ref|ZP_07432469.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu005]
 gi|308377095|ref|ZP_07441113.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu008]
 gi|308405939|ref|ZP_07494488.2| conserved alanine rich protein [Mycobacterium tuberculosis SUMu012]
 gi|2181972|emb|CAB09492.1| CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN [Mycobacterium
           tuberculosis H37Rv]
 gi|13882508|gb|AAK47070.1| ribonuclease D, putative [Mycobacterium tuberculosis CDC1551]
 gi|124601846|gb|EAY60856.1| conserved hypothetical alanine rich protein [Mycobacterium
           tuberculosis C]
 gi|134150855|gb|EBA42900.1| conserved hypothetical alanine rich protein [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506674|gb|ABQ74483.1| putative ribonuclease D [Mycobacterium tuberculosis H37Ra]
 gi|148722398|gb|ABR07023.1| conserved alanine rich protein [Mycobacterium tuberculosis F11]
 gi|253319740|gb|ACT24343.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289417142|gb|EFD14382.1| conserved alanine rich protein [Mycobacterium tuberculosis T46]
 gi|289421294|gb|EFD18495.1| conserved alanine rich protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438165|gb|EFD20658.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN 605]
 gi|289539810|gb|EFD44388.1| conserved alanine rich protein [Mycobacterium tuberculosis K85]
 gi|289687010|gb|EFD54498.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289691920|gb|EFD59349.1| conserved alanine rich protein [Mycobacterium tuberculosis T92]
 gi|289695370|gb|EFD62799.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|308326264|gb|EFP15115.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu002]
 gi|308333435|gb|EFP22286.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu004]
 gi|308337502|gb|EFP26353.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu005]
 gi|308348930|gb|EFP37781.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu008]
 gi|308365086|gb|EFP53937.1| conserved alanine rich protein [Mycobacterium tuberculosis SUMu012]
 gi|323718676|gb|EGB27838.1| alanine rich protein [Mycobacterium tuberculosis CDC1551A]
 gi|326904295|gb|EGE51228.1| conserved alanine rich protein [Mycobacterium tuberculosis W-148]
 gi|328458009|gb|AEB03432.1| conserved alanine rich protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 438

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 24/183 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHN 72
           +D  +    +Y+    +I      +   V +    H      VL    E  +    + H+
Sbjct: 56  VDAERASGFRYSGRAYLIQIRRA-EAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHS 114

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L     + +       T +  R  G     L A+ E L               
Sbjct: 115 ADQDLPCLAE---VGMRPPALYDTELAGRLAGFDRVNLAAMVERL--------------- 156

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                       D +K     AW     Y   DV +  E+   +  + +++ +  +  Q 
Sbjct: 157 LGLGLTKGHGAADWSKRPLPSAW---LNYAALDVELLIELRAAISRVLAEQGKTDWAAQE 213

Query: 192 IND 194
              
Sbjct: 214 FEH 216


>gi|167970096|ref|ZP_02552373.1| conserved alanine rich protein [Mycobacterium tuberculosis H37Ra]
 gi|215404645|ref|ZP_03416826.1| hypothetical protein Mtub0_13363 [Mycobacterium tuberculosis
           02_1987]
 gi|215431621|ref|ZP_03429540.1| hypothetical protein MtubE_13303 [Mycobacterium tuberculosis
           EAS054]
 gi|254551737|ref|ZP_05142184.1| hypothetical protein Mtube_14982 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187698|ref|ZP_05765172.1| hypothetical protein MtubCP_16944 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201808|ref|ZP_05769299.1| hypothetical protein MtubT4_17360 [Mycobacterium tuberculosis T46]
 gi|260205991|ref|ZP_05773482.1| hypothetical protein MtubK8_17005 [Mycobacterium tuberculosis K85]
 gi|294994226|ref|ZP_06799917.1| 3'-5' exonuclease [Mycobacterium tuberculosis 210]
 gi|297732285|ref|ZP_06961403.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN R506]
 gi|313659618|ref|ZP_07816498.1| 3'-5' exonuclease [Mycobacterium tuberculosis KZN V2475]
          Length = 404

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 24/183 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN-TDVTIVAHN 72
           +D  +    +Y+    +I      +   V +    H      VL    E  +    + H+
Sbjct: 22  VDAERASGFRYSGRAYLIQIRRA-EAGTVLIDPVSHGGDPLTVLAPVAEVLSTNEWILHS 80

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L     + +       T +  R  G     L A+ E L               
Sbjct: 81  ADQDLPCLAE---VGMRPPALYDTELAGRLAGFDRVNLAAMVERL--------------- 122

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                       D +K     AW     Y   DV +  E+   +  + +++ +  +  Q 
Sbjct: 123 LGLGLTKGHGAADWSKRPLPSAW---LNYAALDVELLIELRAAISRVLAEQGKTDWAAQE 179

Query: 192 IND 194
              
Sbjct: 180 FEH 182


>gi|229551811|ref|ZP_04440536.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
 gi|258539212|ref|YP_003173711.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
 gi|229314755|gb|EEN80728.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
 gi|257150888|emb|CAR89860.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
          Length = 180

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 23/141 (16%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAEDVCVILF--AFGFDDH----PVELWDC 47
           M  + +DFET          + L      +  +    +       FD           D 
Sbjct: 1   MDFIAMDFETANRKRASACSLALVVVQQNRVVDSFYTL-INPQMQFDPQNIRIHGITPDM 59

Query: 48  VHDPVMPQVLKEALE---NTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
           V D      +   ++        + AHN+ F+ +VL+     + +  P ++ I T+  +R
Sbjct: 60  VQDQPTFDRVWPHIQMFYTPGRIVTAHNAPFDVSVLRLTLDRYGIAAPRYQVIDTVKTSR 119

Query: 102 SN---GLPSALKAVGEALKLS 119
                     L  V  ALK+ 
Sbjct: 120 QFLPKLPNHRLDTVSAALKIP 140


>gi|332992448|gb|AEF02503.1| ribonuclease D [Alteromonas sp. SN2]
          Length = 385

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 83/278 (29%), Gaps = 40/278 (14%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + +D E   TR+       G+ +  +   ++L        P+ + D            
Sbjct: 23  KAVALDTEFVRTRTLSP--HLGLIQLYDGHQLVLI------DPLAIDDLSP-------FI 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             +ENT V  V H+   +       FN          +   A   GL ++L         
Sbjct: 68  ALMENTRVVKVLHSCSEDLETFLTAFN--TVPTPVFDSQFAASILGLGASLG-------- 117

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                    +L+   C     +     +             Y   DV      ++ L   
Sbjct: 118 -------YAKLVELLCDVSLDKGESRTDWIARPL-REAQLSYAANDVLYLLPCYEHLVEK 169

Query: 179 SSK----EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            ++    E     + Q  + +   +    A+   +       +    L++L    ++++R
Sbjct: 170 INEAGKLEWVYQEIAQLADKKRSQMPEEFAYMQIKNNWRLSKEQLTVLQALAAWRLATAR 229

Query: 235 CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
             +    ++F E  L+       + +  LS    + PQ
Sbjct: 230 KKDMALNFVFKEIHLYEAARLMPSSKSGLSQLHGVNPQ 267


>gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 253

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRW---ICTLVL 99
           D      + Q   E +   ++ I  HN+ F+   +        LDI          TL +
Sbjct: 74  DKPDFKTIAQDFIEYIRGAELLI--HNAPFDVGFMDYEFRKLGLDIKTTDICLVTDTLQM 131

Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           AR        +L A+ + L + + K      L+ 
Sbjct: 132 ARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLD 165


>gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae
           T3T1]
          Length = 253

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 11/127 (8%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRW---ICTLVL 99
           D      + Q   E +   ++ I  HN+ F+   +        LDI          TL +
Sbjct: 74  DKPDFKTIAQDFIEYIRGAELLI--HNAPFDVGFMDYEFRKLGLDIKTTDICLVTDTLQM 131

Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEE-GKELIARFCKGETHECLYDRNKPNHREAWRL 156
           AR        +L A+ + L + + K    G  L A             +      +   +
Sbjct: 132 ARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLSMTGGQTSLFDEDHADI 191

Query: 157 FGEYCKG 163
                  
Sbjct: 192 SIIQAGA 198


>gi|258507958|ref|YP_003170709.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
 gi|257147885|emb|CAR86858.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
 gi|259649285|dbj|BAI41447.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
          Length = 180

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 23/141 (16%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAEDVCVILF--AFGFDDH----PVELWDC 47
           M  + +DFET          + L      +  +    +       FD           D 
Sbjct: 1   MDFIAMDFETANRKRASACSLALVVVQQNRVVDSFYTL-INPQMQFDPQNIRIHGITPDM 59

Query: 48  VHDPVMPQVLKEALE---NTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
           V D      +   ++        + AHN+ F+ +VL+     + +  P ++ I T+  +R
Sbjct: 60  VQDQPTFDRVWPHIQMFYTPGRIVTAHNAPFDVSVLRLTLDRYGIAAPRYQVIDTVKTSR 119

Query: 102 SN---GLPSALKAVGEALKLS 119
                     L  V  ALK+ 
Sbjct: 120 QFLPKLPNHRLDTVSAALKIP 140


>gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 203

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 25/141 (17%)

Query: 1   MATLF--IDFETRSPIDLTKCGICKYAEDVCVIL------FAFGFDDHPV---ELWDCVH 49
           M  ++   D ET              A    +I            +       E+ +   
Sbjct: 1   MREIYTVFDLETTGLDPTKDQITEIAAIRTDLIREYGRLDIRITKNSGTKLTPEIVNLTG 60

Query: 50  DPV------MPQVLKEALEN---TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
                    +P+ +   L +   +   +VAH++ F+   L            ++CT  L+
Sbjct: 61  ISESMMRGGVPEPVAIMLLSCFMSGTIVVAHHAPFDLAFLARYQ---FEPDSFVCTRALS 117

Query: 101 RSN--GLPSALKAVGEALKLS 119
           +       ++L +V E   + 
Sbjct: 118 KLVESDESASLASVAERRGIE 138


>gi|284006971|emb|CBA72245.1| ribonuclease D [Arsenophonus nasoniae]
          Length = 386

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 47/180 (26%), Gaps = 40/180 (22%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L    +D   + L D +    M +  
Sbjct: 36  KIALDTEFVRVKTYY---------------PQLSLIQL-YDGEQLSLIDPIAITNM-EPF 78

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K  L +  VT + H    +  V              + T ++A   G P +         
Sbjct: 79  KNLLTDGKVTKILHAGSEDIEVFFHHL--ACVPQPMLDTQIMAAFVGHPISSGFASLV-- 134

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
                    K L     K E+      R             +Y   DV     + ++L+ 
Sbjct: 135 --------NKYLTIALDKSESRTDWLVRPLS------DKQCQYAAADVFFLLPLAEKLQQ 180


>gi|145525585|ref|XP_001448609.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416164|emb|CAK81212.1| unnamed protein product [Paramecium tetraurelia]
          Length = 498

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 44/178 (24%), Gaps = 30/178 (16%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK--EAL-- 61
           ID E+   I         ++    V LF     +        ++   +   +K  + L  
Sbjct: 345 IDTESYQDIPQNT-----FSAKNQVCLFQIALPNK----IYLLNTTNLVNSIKYQQFLVQ 395

Query: 62  -ENTDVTIVAHNSYFERTVLKACFNL-DIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
             ++D   +  N   +   L       D+ +  +I              L  +       
Sbjct: 396 YASSDCLKIGQNIKMDFLCLLVQIGKQDVDLRNFI-------------ELSQLFRQKYPD 442

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            +K     +      K      +   +    R        Y   D  +   ++     
Sbjct: 443 EKKTNLSFQCQRLLGKELDK--VEQISHWQKRPLRSAQIHYAALDAIICLHLYNHYIQ 498


>gi|46198514|ref|YP_004181.1| hypothetical protein TTC0206 [Thermus thermophilus HB27]
 gi|55980543|ref|YP_143840.1| DNA polymerase III subunit epsilon [Thermus thermophilus HB8]
 gi|46196136|gb|AAS80554.1| hypothetical conserved protein [Thermus thermophilus HB27]
 gi|55771956|dbj|BAD70397.1| probable DNA polymerase III epsilon subunit [Thermus thermophilus
           HB8]
          Length = 247

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPI-HRWICTLVLARSNGLP-- 106
             + +     L +   T+V HN+ F+   L+     L   + +  + +L LAR  GLP  
Sbjct: 138 EEVLEKAYPLLADA--TLVIHNAAFDLGFLRPALEGLGYRLENPVVDSLRLARR-GLPGL 194

Query: 107 --SALKAVGEALKLS 119
               L A+ E L+L 
Sbjct: 195 RRYGLDALSEVLELP 209


>gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sp. HGF1]
 gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sp. HGF1]
          Length = 1528

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
             + +  KE   + D  +VAHN+ F+   L+     FNL +  +  + TL LAR  
Sbjct: 499 EDVMKRFKEW--SEDCILVAHNAAFDMGHLEQTYKRFNLGVCDNPVLDTLALARVL 552


>gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1402

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 27/140 (19%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVI-LFAFGFDDH----------PVELWD-C 47
           + +D ET         + + G  K  E+  +   F+   D                 D  
Sbjct: 391 VVVDIETTGFDSQRDRIIEIGAVK-IENGQITEKFSTFVDPEGKIPVRISELTGIYQDMV 449

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              P +   + E     +  V  VAHN+ F+   LK  +    + I  + +I TL L+R 
Sbjct: 450 DKAPKLSDAILEFEKFASGSVL-VAHNAQFDIGFLKKAYQECGI-IFDYTYIDTLELSRR 507

Query: 103 N---GLPSALKAVGEALKLS 119
                    L  V E L + 
Sbjct: 508 LLTDLSSHKLNKVAEFLNVE 527


>gi|312882473|ref|ZP_07742214.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369873|gb|EFP97384.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 346

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 22/197 (11%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
             + L++  V  V H    +  V    F      H  + T ++A   G   +        
Sbjct: 41  FIDLLKDPSVLKVLHACGEDLEVFHNSFG--CLPHPMVDTQLMAAFLGHGLSTGFAALVE 98

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +           L     K E+      R     +        Y   DV   + +F  L 
Sbjct: 99  QY----------LEVELDKSESRTDWLARPLTQKQLD------YAAADVFYLKPLFSLLL 142

Query: 177 PLSSKEQELWYLDQTIND----RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
               +        Q        R   ++  LA+   +     + K    L+ L    +  
Sbjct: 143 EKIEQVGWWKAAQQESELLAVKRIKTIEPDLAYLDIKGAWQLKPKELAILKPLAAWRLKE 202

Query: 233 SRCLEKLKTWLFLETGL 249
           +   +    ++F E+ L
Sbjct: 203 AVKRDLALNFIFKESDL 219


>gi|255320390|ref|ZP_05361574.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
           SK82]
 gi|262379328|ref|ZP_06072484.1| ribonuclease HI [Acinetobacter radioresistens SH164]
 gi|255302585|gb|EET81818.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
           SK82]
 gi|262298785|gb|EEY86698.1| ribonuclease HI [Acinetobacter radioresistens SH164]
          Length = 455

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 50/182 (27%), Gaps = 30/182 (16%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDDHPVE 43
             L +D ET        D              LT   I  Y      +  +         
Sbjct: 228 RQLILDTETTGFYFQDGDRIIEVGAIEMVNRKLTGSSIHIYINPEKPVGDSVDI---HGI 284

Query: 44  LWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDI--PIHRWICT 96
             + + D      + E L N      I+AHN+ F+   L              +     T
Sbjct: 285 TDEFLQDKPRYAEIAEVLFNYLKGAEIIAHNASFDMNFLDMEFKRAGFPALSEVCEVTDT 344

Query: 97  LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           L LA+S       +L A+    ++ ++       L+      + +  +         +A 
Sbjct: 345 LALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDAL 404

Query: 155 RL 156
             
Sbjct: 405 SQ 406


>gi|255074453|ref|XP_002500901.1| predicted protein [Micromonas sp. RCC299]
 gi|226516164|gb|ACO62159.1| predicted protein [Micromonas sp. RCC299]
          Length = 316

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 57/244 (23%), Gaps = 42/244 (17%)

Query: 1   MATL-------FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVM 53
           M  L        +DFE    + L++ G         + L      + PV L D       
Sbjct: 89  MRELIARGEPCAVDFE---GVALSRTGA--------ISLAQVAPPNGPVYLVDVACMGAA 137

Query: 54  P---QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL----------- 99
                 L E L  T    +  +   +   L   F + +         V            
Sbjct: 138 AFDEGRLGELLGATHPLKLVFDCRGDADALHHQFGVRMR--GVFDVQVAFCLKKDVDHGG 195

Query: 100 ---ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
              A   GL  ALK       L  +   E   + +        E     +    R     
Sbjct: 196 KRGAYLMGLRKALKEC---PGLDDEARHELDAVKSAGASLFAPELGGSYDAWTKRPMHPD 252

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
             +Y   DV  T              ++          R             +      +
Sbjct: 253 LVKYAAADV--TYLHHMHRTWRGFCGEKKMAAVTERRMRERIESPEGLEQGTEAAKRRGS 310

Query: 217 KLDQ 220
           + ++
Sbjct: 311 RREK 314


>gi|171910647|ref|ZP_02926117.1| ribonuclease D, putative [Verrucomicrobium spinosum DSM 4136]
          Length = 381

 Score = 42.8 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 66/240 (27%), Gaps = 49/240 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           +++D E  S           +     + L     +         + DP++   L   LE 
Sbjct: 42  VYLDTEADSL----------HHFQEKLCLIQLAANG-----IYALIDPLVLSDLGPLLEV 86

Query: 64  -TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEALKLSSQ 121
             +  +  H++ ++ T+LK   N          T V AR  G     L A+ E       
Sbjct: 87  VDNAEVWFHSADYDLTLLKRTCNWT--PTHLKDTQVAARLTGHRTFGLAALVEQH----- 139

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
                       CK    E    R  P           Y   DV     +          
Sbjct: 140 -------CGVTLCKSSQKEDWSLRPLP------AKMQAYAVDDVRYLGRLVDIFMTDLVA 186

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
           +  + + +Q+              +L + V   + K   E   ++         L  L+ 
Sbjct: 187 KDRVTWFEQSCE------------SLRRDVLSRQEKDRDEAWRISGSGRLRPAGLAILRE 234


>gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius
           CECT 5713]
          Length = 1444

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 74/255 (29%), Gaps = 19/255 (7%)

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVL 99
           D V      + +    +    D  IV HN+ F+   +    +   N+++    WI TL L
Sbjct: 483 DMVRGSKSEEEVFRLFKEFCKDCIIVGHNATFDVDFMNTGYERH-NMEMIQEPWIDTLPL 541

Query: 100 ARSNGLPSA---LKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
           AR          L  + + L   L              F      +   ++    H +  
Sbjct: 542 ARYLYPEMKGFRLNTLAKKLNIKLEHHHRAIYDAEATGFIYYAMLKDAEEKQILYHDDFN 601

Query: 155 RLFGE---YCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           +  GE   Y     +    + K  E L +  +           R   V  ++     + +
Sbjct: 602 KHIGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSESMVKYFYRVPRVPRSILEKYREGL 661

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ-RVLSSNKKLT 270
            V     D E+ +       +     K K   +    +  + L E   +  ++  N  L 
Sbjct: 662 IVGSACADGEVFTAMMQKGYTI---AKQKAEFYDYLEVQPKPLYEPLLEQELVKDNDNLE 718

Query: 271 PQAIQVFNNRMRASR 285
                +        +
Sbjct: 719 EIITNMVKLAHELDK 733


>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1410

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 51  PVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA---RSN 103
           P + +VL + LE     T+VAHN+ F+ T +K       +++  +  + TL L+     N
Sbjct: 462 PPIDEVLPKFLEFIKGSTLVAHNANFDVTFIKTKAKNLGIEVD-NPVLDTLELSRHMYEN 520

Query: 104 GLPSALKAVGEALKLSSQ 121
                L  V + L +S +
Sbjct: 521 LKNYKLDTVAQHLGVSLE 538


>gi|225677154|ref|ZP_03788153.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590821|gb|EEH12049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 231

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 53/181 (29%), Gaps = 34/181 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------- 54
             + +D ET     L      +  E  CV L         V       +  +P       
Sbjct: 6   REIVLDTETTG---LDTGSGHRIIEIGCVELIN-RIPTGKVFHRYLNPERDIPYHSFKIH 61

Query: 55  ---QVL---KEALEN---------TDVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
              +     K    +         ++  +V HN+ F+       L       I   R + 
Sbjct: 62  GISEEFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELSKLNAGLISSDRVLD 121

Query: 96  TLVLAR--SNGLPSALKAVGEALKLSSQKMEEGKELI--ARFCKGETHECLYDRNKPNHR 151
           TL LAR    G P++L A+ +   +S +  E    L+      K         +      
Sbjct: 122 TLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFLFDN 181

Query: 152 E 152
           E
Sbjct: 182 E 182


>gi|114766856|ref|ZP_01445783.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114540977|gb|EAU44036.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseovarius sp. HTCC2601]
          Length = 401

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 35/138 (25%), Gaps = 60/138 (43%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            D ET   +               V+                ++  ++P  + + L +  
Sbjct: 280 FDTETTGLLP----------HKDEVVQIGA---------VRVLNGRIVPGEVMDQLVDPG 320

Query: 66  VTI-------------------------------------VAHNSYFERTVLKAC---FN 85
           + I                                     VAHN+ F+   L+       
Sbjct: 321 IPIPPSSTKVHQVSDAMVRGQPDIAEAGRRFHRFAKGSVIVAHNAPFDMAFLRRHRNRMG 380

Query: 86  LDIPIHRWICTLVLARSN 103
           ++   H  + T++L+   
Sbjct: 381 VEWD-HPILDTVLLSAVL 397


>gi|71735368|ref|YP_276338.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555921|gb|AAZ35132.1| DNA polymerase I domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 512

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 7/147 (4%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +P   +    +      + + I      LQ ++   R+ +I  +GK     D    EA +
Sbjct: 260 IPLSQKRIFPIVDCFGSITSRIYFKDPSLQNLAKHHRNILIPDDGKVFSYVDYEQYEAGI 319

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
           +A ++ ++  L  +  G+           +       +++R   K + L+  Y    +  
Sbjct: 320 MAALSNDETLLTLYADGDLYKQVASGIFQD-------EERRKEAKRLFLSYAYGMKNRHL 372

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEW 475
              A   G +        K     E+W
Sbjct: 373 IDAAFGYGADRRLTKDFFKRFETFEKW 399


>gi|189423312|ref|YP_001950489.1| exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ]
 gi|189419571|gb|ACD93969.1| Exonuclease RNase T and DNA polymerase III [Geobacter lovleyi SZ]
          Length = 302

 Score = 42.8 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 48/164 (29%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDV------CVILFAFGFDDHPVELWDCVHDPVM 53
           L +D ET         + + GI  +  D        +I    GF+D P        +   
Sbjct: 45  LCLDTETTGLNPACDKIIELGIVAFQYDPLTSGIIKIIGRYAGFED-PG--IPLSAETTA 101

Query: 54  PQVLKEA--------------LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL-- 97
              + +               L +    ++AHN+ F+R  ++A F +   +  W C++  
Sbjct: 102 ITGITDEMVSGQSFDDAQVCRLADQASLVIAHNAAFDRKFVEARFPVFSKV-PWGCSMTQ 160

Query: 98  -----------VLARSN-------GLPSALKAVGEALKLSSQKM 123
                      VL               AL      L +  + +
Sbjct: 161 VDWQAERISTRVLEYLLFKFGWFINAHRALDDAEGLLGILLESL 204


>gi|320160945|ref|YP_004174169.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
 gi|319994798|dbj|BAJ63569.1| DnaQ exonuclease/DinG helicase family protein [Anaerolinea
           thermophila UNI-1]
          Length = 934

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 38/142 (26%), Gaps = 35/142 (24%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVLKEA- 60
            + ID ET        C I        +    F       E    +     +P  + +  
Sbjct: 7   YVAIDIETTGLDPEKDCII-------EIGAVRFSNRRVEAEWSSLIKPTKNIPSFITQLT 59

Query: 61  -LENTDVTI--------------------VAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
            + N  V                      V HN  F+ + L+    L    +  I T  L
Sbjct: 60  GITNDMVRKAPTIQDVIGDLAHFVGNCPIVGHNIRFDLSFLQKQHILW--NNHVIDTYEL 117

Query: 100 ARSNGLP---SALKAVGEALKL 118
           A           L  + ++L +
Sbjct: 118 ASVLLPTASRYNLGVLAQSLGI 139


>gi|306840939|ref|ZP_07473681.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
 gi|306289062|gb|EFM60324.1| DNA polymerase III subunit epsilon [Brucella sp. BO2]
          Length = 332

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 21/112 (18%)

Query: 4   LFIDFETRSPID----LTKCGI--CKYAEDVCV--ILFAFGFDDHPVELWDCV------- 48
           + +D ET         + + G    +YA+D  +  +   FG    P +            
Sbjct: 74  VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    +P+   +AL      I+AHN+ F+R  L+  F++      W C
Sbjct: 134 TDEMVKGRTIPRDELDALIAGADIIIAHNAGFDRPFLER-FSIAFANKPWAC 184


>gi|149926803|ref|ZP_01915062.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
 gi|149824355|gb|EDM83573.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
          Length = 308

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 22/116 (18%)

Query: 2   ATLFIDFETRSPI----DLTKCGICKYAEDVCVILFA-------------FGFDDHPVEL 44
             L +D ET        ++ + G      D                             +
Sbjct: 45  KVLVVDTETTGLDYATCEVIEVGAVLIEVDQDTGAIGAVLGTFGGLEEPKVAITPENSAI 104

Query: 45  WDCVH----DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
               +         +   +AL +     VAHN+ F++  +   F   +    W CT
Sbjct: 105 HGITNEMVKGQRFDEAALKALCSEAALFVAHNAAFDKPFMLRRFPW-LEKSIWACT 159


>gi|50121299|ref|YP_050466.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043]
 gi|49611825|emb|CAG75274.1| ribonuclease D [Pectobacterium atrosepticum SCRI1043]
          Length = 374

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 42/169 (24%), Gaps = 42/169 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQV 56
            + +D E     T                   + L    +D   + L D        P  
Sbjct: 24  QVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPLTITDWAP-- 65

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  L + +VT   H    +  V    F        +I T +LA   G P +        
Sbjct: 66  FQALLRDEEVTKFLHAGSEDLEVFLNTFG--TLPTPFIDTQILAAFLGKPLSYGFAALVA 123

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                 +++ +       +  +                    +Y   DV
Sbjct: 124 DYMGVSLDKSESRTDWLARPLS----------------EKQCDYAAADV 156


>gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 911

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 29/142 (20%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCV-----------ILFAFGFDDHPVE---- 43
            +  D ET         + + G  K      +           +   +  ++        
Sbjct: 481 YVVFDLETTGFSPDKNKIIEIGAVKVV-HGEITERFSTFVNPEVPIPYRIEELTSIRDDM 539

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA 100
           + D      +     E   +    +VAHN+ F+ + +        ++      I T+ LA
Sbjct: 540 VIDAPKIETILPQFMEFCGDA--IMVAHNADFDMSFIIKNCERQGIE-KEFTIIDTVALA 596

Query: 101 RSNGLPSA---LKAVGEALKLS 119
           R          L  V +AL +S
Sbjct: 597 RILLPQLNRFKLDTVAKALGVS 618


>gi|157129632|ref|XP_001655429.1| hypothetical protein AaeL_AAEL011560 [Aedes aegypti]
 gi|108872139|gb|EAT36364.1| conserved hypothetical protein [Aedes aegypti]
          Length = 339

 Score = 42.4 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 17/100 (17%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDI 88
           L +       + ++D +    +P+ L+  L +  V  VAHN+   R    VL+  +    
Sbjct: 146 LLSIAT-PERIYVFDVM-WMNVPKDLRAILGDPKVRRVAHNA---RLVEDVLRHRY--QA 198

Query: 89  PIHRWICTLVL--ARSNGLPSALKA-----VGEALKLSSQ 121
           P+ +   TLV   + +N      +      + + L L S 
Sbjct: 199 PLGKCFDTLVAHISTTNDYDDQHELSIQECLAKYLNLPSN 238


>gi|260550748|ref|ZP_05824956.1| ribonuclease HI [Acinetobacter sp. RUH2624]
 gi|260406254|gb|EEW99738.1| ribonuclease HI [Acinetobacter sp. RUH2624]
          Length = 459

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 40/187 (21%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYA-------EDVCVILFAFG 36
             L +D ET        D              LT   I  Y        E   +   +  
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGESENIHGISDD 291

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI--PIH 91
           F        D          L E L      I+AHN+ F+   L        L     + 
Sbjct: 292 FLKDKPVYADIA------DTLFEYL--KGAEIIAHNATFDMNFLDMEFRRVGLPALSEVC 343

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
               TL LA++       +L A+    ++ ++       L+      + +  +       
Sbjct: 344 EVTDTLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSF 403

Query: 150 HREAWRL 156
             +A   
Sbjct: 404 DMDALSQ 410


>gi|213582276|ref|ZP_03364102.1| DNA polymerase II [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 319

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 11/100 (11%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRTVYMLGPANGDERQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR 92
                 + DV  +  N   F+  +L+     + + + + R
Sbjct: 210 AWFAEHDPDVI-IGWNVVQFDLRMLQKYAERYRIPLRLGR 248


>gi|15616860|ref|NP_240073.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11132278|sp|P57337|DPO3E_BUCAI RecName: Full=DNA polymerase III subunit epsilon
 gi|25299956|pir||G84958 DNA-directed DNA polymerase (EC 2.7.7.7) epsilon chain [imported] -
           Buchnera sp. (strain APS)
 gi|10038924|dbj|BAB12959.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 237

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 30/149 (20%)

Query: 2   ATLFIDFET-----RSPIDLTKCGICKYAEDVCVILF-----------AFGFDDHPVELW 45
            T+ +D ET      S   +    I   A ++    F               +   +++ 
Sbjct: 5   RTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQPGRSIESGALKVH 64

Query: 46  DCVHDPVMPQVLKEALEN------TDVTIVAHNSYFERTVLKACFNL---DIPIH---RW 93
              +  ++ + + + + +       +  +V HN+ F+   +     +    I I+     
Sbjct: 65  GITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFCSI 124

Query: 94  ICTLVLARSNGLPSA--LKAVGEALKLSS 120
           I TL +AR         L A+    K++ 
Sbjct: 125 IDTLKIARELFPGKKNTLDALCTRYKINK 153


>gi|238788499|ref|ZP_04632292.1| Ribonuclease D [Yersinia frederiksenii ATCC 33641]
 gi|238723412|gb|EEQ15059.1| Ribonuclease D [Yersinia frederiksenii ATCC 33641]
          Length = 394

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 59/217 (27%), Gaps = 48/217 (22%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV- 56
            + +D E     T                   + L    +D   + L D +    + +  
Sbjct: 45  HVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPL---PITEWQ 85

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +E L++ +V    H    +  V    F   +     I T VLA  +G   +       
Sbjct: 86  PFRELLQDLNVVKYLHAGSEDLEVFLNAFG--LMPTPMIDTQVLAAFSGRTLS------- 136

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                     G  ++    +G   +    R     R       +Y   DV     +  +L
Sbjct: 137 ---------CGFAMLVNEFEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLATKL 187

Query: 176 EPLSSKEQELWYLDQT----INDRGYCVDVALAHTLN 208
              +   + +             R   +D  LA+   
Sbjct: 188 VAATEAAERMDAAIDECQLLCRRRSETLDPELAYREI 224


>gi|308273149|emb|CBX29752.1| hypothetical protein N47_F14470 [uncultured Desulfobacterium sp.]
          Length = 182

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 26/151 (17%)

Query: 2   ATLFIDFETRSPID-----LTKCGICKYAEDVCVI---------LFAFGFDDHPVELW-- 45
             +  D ET          + + G+  + E+  +I           A       V     
Sbjct: 16  KYVIFDVETTGFNPQHGARIIEIGV-VHIENGNIISEFKSLINCGKAVSKQAQKVNGITN 74

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           + +     P+ +        +  T+VAHN+ F+ + L+         +  + ++CTL ++
Sbjct: 75  EMLSGEPTPEEVFPDFLKFISKSTLVAHNAVFDISFLRYELSRLGFVLS-NDYLCTLNIS 133

Query: 101 RSNGL---PSALKAVGEALKLSSQKMEEGKE 128
           R          L  V + + ++  K      
Sbjct: 134 RKIFPDLENHKLLTVAKHILVNLPKNLHLHR 164


>gi|302333066|gb|ADL23259.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 897

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 63/504 (12%), Positives = 133/504 (26%), Gaps = 60/504 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTL---VLARSNGLPSALKAVGEALK 117
            D   VAHN  F+   +K  F   N+     + I TL    +A        L  + EA  
Sbjct: 83  KDCIFVAHNVDFDLNFIKKAFKDCNIQYRPKKVIDTLEIFKIAFPTDKSYQLSELAEAHG 142

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPN---------HREAWRLFGEY 160
           +                K +I  F K E       +             +   + +  +Y
Sbjct: 143 ITLANAHRADEDAATTAKLMILAFEKFEKLPLDTLKQLYYLSKQLKYDLYDIFFEMVRQY 202

Query: 161 CKGDVTVTREIF--KRLEPLSSKEQELWYLD-QTINDRGYCVDVALAHTLNQIVDVERTK 217
               +  + E F           ++     +    +     V+        Q + +  T 
Sbjct: 203 DAKPLDKSYEKFEQIIYRKQVDFKKPTTNYNGSLKSLYSKAVNQLGLTYRPQQLYLAETI 262

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWL-FLETGLHLED-LTETTCQRVLSS--NKKLTPQA 273
           LDQ + S    + +S    + L   L  L   +     +  +T  ++L S   +K  P  
Sbjct: 263 LDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNTKLLQSQLLEKDIPAM 322

Query: 274 IQVFNNRM--RASRSAVLKLN-TLVEAMNSDGRLRGTLQ----FLGASRTGRWSGCVFPP 326
            +  N ++     +S    ++  L+  +  D      +      L    T   SG     
Sbjct: 323 NEALNFKINALLIKSKSDYISLGLISQILKDDTSNYEVNILKMQLLIWITETPSG-DIQE 381

Query: 327 QNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEA 386
            NL    + + +                + ++  +  +                   I  
Sbjct: 382 LNLKGGQKMYFDQKIETYVPARHDVHYYNFIKRNAQNI------------------QIGI 423

Query: 387 RVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAK 446
              A +     +   ++  +D  V    R  + A  QVT +        +L L  +   +
Sbjct: 424 TNHAHLIHSDVENSIYQLFDDCIVDEAHRLPDYALNQVTNELSYADIKYQLGLIGKNENE 483

Query: 447 AF---QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTAC 503
                        +        +          +       +         +        
Sbjct: 484 KLLKAIDQLEKQRILEKLDIAPIDIFGLKASMNEIHELNEQLFSTIFTIINDSDVYDDDI 543

Query: 504 ERVKKAW-RQKHSRVSELWNELHQ 526
            R    +  +    + +L   + +
Sbjct: 544 HRFHNVFTFETKDILKDLHAIIDK 567


>gi|257791384|ref|YP_003181990.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
 gi|257475281|gb|ACV55601.1| Exonuclease RNase T and DNA polymerase III [Eggerthella lenta DSM
           2243]
          Length = 367

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 31/147 (21%)

Query: 1   MATLFIDFET--------------RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL-- 44
           M   F D ET               +  D T      Y  +         FDD  V +  
Sbjct: 1   MLYTFFDVETPNRRNDRICSIGAVVTDQDGTVVEKKSYLVNPES-----SFDDINVRIHG 55

Query: 45  ---WDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICT 96
               D  +    P++  ++L        +VAHN+ F+ +VL      +++  P   + CT
Sbjct: 56  IAPVDVRNAKTFPELWYDSLSAFFPVDGVVAHNARFDLSVLTKTLVSYDIPSPKMSYACT 115

Query: 97  LVLARSNGL--PSALKAVGEALKLSSQ 121
           L +++         L  V EAL +  +
Sbjct: 116 LDMSKKIDFIGGGKLPHVCEALGIELE 142


>gi|154509184|ref|ZP_02044826.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798818|gb|EDN81238.1| hypothetical protein ACTODO_01705 [Actinomyces odontolyticus ATCC
           17982]
          Length = 550

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 42/142 (29%), Gaps = 28/142 (19%)

Query: 4   LFIDFETRSP---IDLTKCGICKYAEDVCVILFAFGFDDH--------------PVELWD 46
           + +D ET       D+T+ G  +  +   V  F+                    P  + D
Sbjct: 30  VVVDLETTGLGAGADITEIGAVRIRDGAVVDEFSSLVKPSRPIPPFITSLTGITPAMVAD 89

Query: 47  CVHDPVMPQVLKEA--L-ENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLA 100
                 + +   E   L  +    +VAHN+ F+   L           P  R + TL LA
Sbjct: 90  AAPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRIVDTLALA 149

Query: 101 RS-----NGLPSALKAVGEALK 117
           R            L  V     
Sbjct: 150 RLALPRPLVRNHKLGTVASYFG 171


>gi|255029619|ref|ZP_05301570.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Listeria monocytogenes LO28]
          Length = 132

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 41/138 (29%)

Query: 1   MA---TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVM 53
           M     + +D ET         G     ED  +I FA  F +              +  +
Sbjct: 1   MKQKRYIVVDLETT--------GNQASRED-RIIQFAACFVESGKRLETYTTFLNPEKPI 51

Query: 54  PQVLK-------------EALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
           P  ++                E+          D   VAHN  F+ T L+       + +
Sbjct: 52  PAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISL 111

Query: 89  PIHRWICTLVLARSNGLP 106
              + + T+ LAR     
Sbjct: 112 GKMKKLDTVELARIMYPG 129


>gi|161504623|ref|YP_001571735.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865970|gb|ABX22593.1| hypothetical protein SARI_02738 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 246

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFNL---DI 88
                  + D  +    K    +             +V HN+ F+   +   F L   DI
Sbjct: 64  EAFGVHGIADEFLLD--KPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDI 121

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L +AR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTNTFCKVTDSLAVARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|302880064|ref|YP_003848628.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
 gi|302582853|gb|ADL56864.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
           ES-2]
          Length = 204

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 55/239 (23%), Gaps = 65/239 (27%)

Query: 1   MATLF-IDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWD------- 46
           M T+  IDFET        D           D  +   +  +    +             
Sbjct: 1   METVAVIDFETTGMSPELGDRATEVAVVIVSDGKI---SSRYQSLMNTGAYIPPFIEDLT 57

Query: 47  ------CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIPIHRWI-CT 96
                     P   QV+KE L +       VAHN+ F+   L      +     +   C+
Sbjct: 58  GISNEMIRQAPPAAQVMKE-LADFVGAAPWVAHNASFDSRFLDAEWSRMGHRREQAFACS 116

Query: 97  LVLARSN---GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           ++LAR          L  +   L L                                   
Sbjct: 117 MLLARRLYPDSPNHKLGTLVRFLGLPDTARHHR--------------------------- 149

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
                     D  +T  ++ R+       Q L  +          V  A          
Sbjct: 150 -------ALADAEMTAHLWLRMVSDLKNRQGLDVVTHEFLRALQKVPKAKLPAYIAKFA 201


>gi|157135976|ref|XP_001663646.1| hypothetical protein AaeL_AAEL013455 [Aedes aegypti]
 gi|108870061|gb|EAT34286.1| conserved hypothetical protein [Aedes aegypti]
          Length = 339

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 17/100 (17%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT---VLKACFNLDI 88
           L +    D  + ++D +    +P+ L+  L +  V  VAHN+   R    VL+  +    
Sbjct: 146 LLSIATPD-RIYVFDVM-WMNVPKDLRAILGDPKVRRVAHNA---RLVEDVLRHRY--QA 198

Query: 89  PIHRWICTLVL--ARSNGLPSALKA-----VGEALKLSSQ 121
           P+ +   TLV   + +N      +      + + L L S 
Sbjct: 199 PLGKCFDTLVAHISTTNDYDDQHELSIQECLAKYLNLPSN 238


>gi|313896094|ref|ZP_07829648.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529365|ref|ZP_08030453.1| exonuclease [Selenomonas artemidis F0399]
 gi|312975519|gb|EFR40980.1| exonuclease [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320138331|gb|EFW30225.1| exonuclease [Selenomonas artemidis F0399]
          Length = 179

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 18/114 (15%)

Query: 2   ATLFIDFETR---SPIDLTKCGICKYAEDVCVILFAFG------FDD-------HPVELW 45
             L  D ET    S  ++    +   A    V    +       + D        P  + 
Sbjct: 4   KILVFDTETTGFRSDDEVLTLAVVDGAGKTVVDGM-YAPVSKKEWPDAEKVNRISPAMVA 62

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
           DC         L+    + +  +V +N  F+  +L     + I        ++ 
Sbjct: 63  DCAPILTHRAELERLFNDPETLLVGYNIEFDIRLLGQ-SGIRITNPNRHDVMLA 115


>gi|301645642|ref|ZP_07245570.1| exonuclease [Escherichia coli MS 146-1]
 gi|301076071|gb|EFK90877.1| exonuclease [Escherichia coli MS 146-1]
          Length = 220

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           V   
Sbjct: 115 VALY 118


>gi|167816919|ref|ZP_02448599.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 91]
          Length = 346

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 36/142 (25%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA---- 60
           F+D ET         G         + +     +              +P  +++     
Sbjct: 17  FVDLETTG-------GSAAEHRITEIGVVVVNANGTSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 61  ---------LEN---------TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                      +              VAHN+ F+R  L+A F    +       +CT+ L
Sbjct: 70  DAMVRGAPTFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRL 128

Query: 100 ARSNGL---PSALKAVGEALKL 118
           +R+         L A+ E   L
Sbjct: 129 SRALFPRESRHGLDALIERHAL 150


>gi|53720167|ref|YP_109153.1| DNA polymerase/helicase [Burkholderia pseudomallei K96243]
 gi|52210581|emb|CAH36564.1| possible DNA polymerase/helicase [Burkholderia pseudomallei K96243]
          Length = 381

 Score = 42.4 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 36/142 (25%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA---- 60
           F+D ET         G         + +     +              +P  +++     
Sbjct: 17  FVDLETTG-------GSAAEHRITEIGVVVVNANGTSTWTTLVDPQQPIPPFIQQLTGIT 69

Query: 61  ---------LEN---------TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                      +              VAHN+ F+R  L+A F    +       +CT+ L
Sbjct: 70  DAMVRGAPTFADIAGALFERLDGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRL 128

Query: 100 ARSNGL---PSALKAVGEALKL 118
           +R+         L A+ E   L
Sbjct: 129 SRALFPRESRHGLDALIERHAL 150


>gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 3008A-a]
          Length = 1420

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 481 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 540


>gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
 gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2052A-d]
          Length = 1420

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 481 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 540


>gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 1424

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners
           AB-1]
 gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 1420

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 481 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 540


>gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX]
 gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
          Length = 590

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 8/62 (12%)

Query: 64  TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGL-----PSALKAVGEA 115
               +VAHN+ F+   LKA      +  P    + TL LAR            L  +   
Sbjct: 128 PGTVLVAHNAPFDVRFLKAACARHGIPWPSPAVLDTLQLARRLVPRGEVRNHRLDTLARV 187

Query: 116 LK 117
             
Sbjct: 188 FG 189


>gi|116670217|ref|YP_831150.1| 3'-5' exonuclease [Arthrobacter sp. FB24]
 gi|116610326|gb|ABK03050.1| 3'-5' exonuclease [Arthrobacter sp. FB24]
          Length = 449

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 41/137 (29%), Gaps = 25/137 (18%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L     +     L D      + Q++ +ALE   V  + H +  +   L     L +   
Sbjct: 86  LVQIRREGSGTWLIDPEPFGDL-QIINDALE--GVEWILHAASQDLPCLSE---LGMWPD 139

Query: 92  RWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
           +   T + AR  GLP   L AV E L                           D +    
Sbjct: 140 KLFDTELAARLAGLPRVGLAAVIEQL---------------LGFGLAKEHSAADWSTRPL 184

Query: 151 REAWRLFGEYCKGDVTV 167
            E W     Y   DV V
Sbjct: 185 PEPW---LRYAALDVEV 198


>gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
 gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners SPIN 1401G]
          Length = 1424

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
 gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 143-D]
          Length = 1416

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 477 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 536


>gi|322389907|ref|ZP_08063447.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321143343|gb|EFX38781.1| DNA-directed DNA polymerase III epsilon subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 836

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 86/312 (27%), Gaps = 39/312 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         ++   R   T+ L++       
Sbjct: 93  QVAKEIFELIEDA--VFVAHNVKFDANLLAEALFWEGFELTTPRI-DTVELSQIFYPTLE 149

Query: 107 -SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY- 160
              L A+   L++        + +         K         R       +      Y 
Sbjct: 150 RYNLGALAAELEIELHHAHSALADAMATAQLLLKLREKIASLPRGLIEKLLSMAECLIYE 209

Query: 161 -------CKGDVTVTR-----EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                     D ++       E+         +  E  +L +        + +       
Sbjct: 210 SRLLIEDALEDSSLFLPAHLVEVHGLYLRKPQQFLESRHLSEQFELNMQLLGME----AY 265

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS--N 266
                    ++  L+      + +   + K   +L        + +  +   ++L     
Sbjct: 266 PEQREFVAYIEDSLQQPLPSFIEAPTGIGKTYAYLLTLLAKTSKRILVSVPTKILQDQIM 325

Query: 267 KKLTPQAI---QVFNNRMRASRSAV---LKLNTLVEAMNSDGRLRGTLQFLGASRTGRWS 320
           KK         Q+  + +++ +  +        L    + +G +R     L    T   +
Sbjct: 326 KKEGKTIQDLFQIPFHSLKSPKDYIQLDKFYEALQSESD-NGMIRRFKMQLLVWLTMTET 384

Query: 321 GCVFPPQNLPRP 332
           G +     L R 
Sbjct: 385 GELSEIGQLYRH 396


>gi|292488477|ref|YP_003531361.1| ribonuclease D [Erwinia amylovora CFBP1430]
 gi|291553908|emb|CBA20953.1| Ribonuclease D [Erwinia amylovora CFBP1430]
          Length = 369

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 60/242 (24%), Gaps = 48/242 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-- 56
           L +D E     T                   + L    +D   + L D +    +     
Sbjct: 21  LALDTEFVRTRTYY---------------PRLGLIQL-YDGETICLIDPL---PITDWTP 61

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            ++ L +  V    H    +  V +  F   +     I T +LA  +G P +        
Sbjct: 62  FRDLLLDQQVIKYLHAGSEDLEVFQHEFG--VLPQPMIDTQILAAFSGRPLS-------- 111

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                    G   I     G   +    R     R        Y   DV     I ++L 
Sbjct: 112 --------CGFATIVESFTGIVLDKSESRTDWLARPLSEKQCRYAAADVFYLLPIAEKLV 163

Query: 177 PLSSKEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
             +    ++                 +    A+         R +    L  +    +  
Sbjct: 164 AETEAAGQMAAALDECRLLCQRRTSVLKPQEAYREIANAWQLRPRQLAALRQMAAWRLEV 223

Query: 233 SR 234
           +R
Sbjct: 224 AR 225


>gi|330684981|gb|EGG96656.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
           epidermidis VCU121]
          Length = 902

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 16/119 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL---ARSNG 104
             + Q + + L++     VAHN  F+   +K  F   N+     R + TL L   A    
Sbjct: 72  KEIAQDIYQQLQD--CVFVAHNVAFDLNFIKKAFKNCNIKYRPKRVMDTLELFKIAFPTD 129

Query: 105 LPSALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
               L  + EA  +                  +I  F K E       +      +  +
Sbjct: 130 KSYQLSELAEAHDIPLNNAHRADEDATTTAHLMIKAFEKFEQLPLDTLKQLYYLSKDLK 188


>gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
 gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners UPII 60-B]
          Length = 1424

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
 gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
          Length = 1424

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
 gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LEAF 2053A-b]
          Length = 1424

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1]
 gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Anoxybacillus flavithermus WK1]
          Length = 1430

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           D      + +     +++    +VAHN+ F+   L A F   N     +  I TL LAR 
Sbjct: 476 DAPDVEEVLEKFYHWIDD--CVLVAHNATFDIGFLNAGFKKINRGKVTNPVIDTLELARY 533

Query: 103 NGL---PSALKAVGEALKLS 119
                    L  + +   + 
Sbjct: 534 LYPELKNHRLNTLCKKFNIE 553


>gi|332030729|gb|EGI70405.1| Putative exonuclease mut-7-like protein [Acromyrmex echinatior]
          Length = 955

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 45/181 (24%), Gaps = 22/181 (12%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA 60
             + ID E                +   + L     +D+ V + D       + ++  E 
Sbjct: 363 NIVGIDLE--WKPSFGT-------KQPELALMQVATEDN-VYILDVTTIGDKLLELWNEL 412

Query: 61  ----LENTDVTIVAHNSYFERTVLKACFN----LDIPIHRWICTLVLARSNGLPSALKAV 112
                 N D+  +      + TV++        +      ++  ++L R          V
Sbjct: 413 GLVLFGNKDIIKIGFGIAQDMTVIRNSLPALSSIKTHGQGYLDLMLLWRKLVEEYNF--V 470

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
                  +       +L+         +     N             Y   D     EI+
Sbjct: 471 FPYKGDPNFTNRSLSKLVELCFGQRLDKSDQFSNWELRPL-RESQIIYAALDAYCLLEIY 529

Query: 173 K 173
            
Sbjct: 530 N 530


>gi|332290211|ref|YP_004421063.1| ribonuclease D [Gallibacterium anatis UMN179]
 gi|330433107|gb|AEC18166.1| ribonuclease D [Gallibacterium anatis UMN179]
          Length = 377

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 46/188 (24%), Gaps = 20/188 (10%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVA 70
            S + L        +    + L    F      +         P      L + +V  + 
Sbjct: 23  YSVVALDTEFERVRSYYAKLGLIQLYFGADVALIDPLTITDWQP--FIALLADANVLKIL 80

Query: 71  HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           H S  +  +              + T ++A   G P +                 G  L+
Sbjct: 81  HASGEDIEIF--HQQFQQIPTPMLDTQIMANFLGFPQS----------------AGFALL 122

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
           A+       +    R     R        Y   DV     I++++    +  +    + Q
Sbjct: 123 AQHYLQVELDKKASRTDWLKRPLSERQLNYAAADVYYLLPIYQKMAATMASSEWKTAIQQ 182

Query: 191 TINDRGYC 198
                   
Sbjct: 183 ECKLFAQK 190


>gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 03V1-b]
          Length = 1424

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|170109177|ref|XP_001885796.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639376|gb|EDR03648.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 250

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 43/191 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVELWDCV--------HDPVM 53
           TL +D E    I+L             + +          V L D          H    
Sbjct: 34  TLAVDLE---GINL--------CRHGKISIIQIMSSVSEVVWLVDVTTLGSQAFDHVGPY 82

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVG 113
            + L+  LE+T +  V ++   +   L   + +++         +L     +  +L+   
Sbjct: 83  GRTLRMILEDTGIKKVFYDVRNDADALYNLYGVNL--TGVYDLQLLE--LAVRHSLRRHT 138

Query: 114 EALKLSSQKMEEGKELIARFCKGE-----THECLYDRNKPN--------HREAWRLFGEY 160
           + L         GK + +               L                R        Y
Sbjct: 139 KFLN------GLGKSITSYLTPPTEWEPIKQAGLRLFQPDFGGSYSVFEDRPLDPRIVAY 192

Query: 161 CKGDVTVTREI 171
           C  DVT+  E+
Sbjct: 193 CAQDVTLLFEL 203


>gi|309784631|ref|ZP_07679266.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
 gi|308927528|gb|EFP73000.1| DNA polymerase domain protein [Shigella dysenteriae 1617]
          Length = 66

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 357 LQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARS 416
           +++ S  +R C+IA  GKKLVV+DL+ IE R+LAW+AGE+WKL AF   +        + 
Sbjct: 1   MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTDPDLYKL 60

Query: 417 FN 418
             
Sbjct: 61  AG 62


>gi|229472393|gb|ACQ72711.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 43/139 (30%), Gaps = 14/139 (10%)

Query: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARSFNVAP 421
            R  +I   G KLV +DLAGIE RV A   G  ++ +       +D++     +      
Sbjct: 12  CRELLITRPGWKLVDSDLAGIELRVFAHYLGRYDEGRYADILLNDDIHQVNADKI----- 66

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
                  R   K +  A  Y           ++    L       K       + DA   
Sbjct: 67  ----GISRRAVKTVTYAFLYGASDVKI---GTSYDSQLTEDQARKKGAEIRRAYLDAIPG 119

Query: 482 CRWMQENHPEHAIEDLFIG 500
              + E     A  D  + 
Sbjct: 120 LERLVEAVKTKAKVDRSLR 138


>gi|70726060|ref|YP_252974.1| hypothetical protein SH1059 [Staphylococcus haemolyticus JCSC1435]
 gi|68446784|dbj|BAE04368.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 35/143 (24%)

Query: 4   LFIDFETR-------SPIDLTKCGICKYAEDV---------------CVILFAFGFDDHP 41
           + +DFET          + + K    +  E                  V          P
Sbjct: 42  IALDFETANGKRTSICSVGMVKVVNNEIVESFYTLVNPFDYFSQTNIEVHGIT------P 95

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT-L 97
            ++ D      +   + + +    + +VAHN+ F+  VL       N++ P   + C+  
Sbjct: 96  EDVIDAPSFEYVFPYMMQFI--DKLPVVAHNAAFDMNVLHQSLKQLNIETPSMIYFCSYQ 153

Query: 98  VLARSNG-LPSALKAVGEALKLS 119
           +  R+       LK + +  KL 
Sbjct: 154 LAKRTIDAYRYGLKHLMKHYKLD 176


>gi|83285930|ref|XP_729939.1| 3'-5' exonuclease [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489160|gb|EAA21504.1| 3'-5' exonuclease, putative [Plasmodium yoelii yoelii]
          Length = 284

 Score = 42.4 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 53/180 (29%), Gaps = 15/180 (8%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
               ++D ++   +   +K+ +EN     V H+   + + L      DI       TL  
Sbjct: 15  EKYYIFDLLN-KSVINSVKKIIENKKTLKVIHDCREDSSALYNQL--DIKFENVYDTLRA 71

Query: 100 ARSNGLPSALKAVGE--ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                       + +   L L    +    + +    K           +P  + +    
Sbjct: 72  HMLLLEKKKENDIYQISFLNLLHDYLGVKDDCLNNIKKEMYKNEKIWEIRPLSKISI--- 128

Query: 158 GEYCKGDVTVTREIFKRL------EPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
             Y   +V     I+K        + +  K ++        +     VD+A    + + +
Sbjct: 129 -IYALKNVKYLLPIYKIFDKLVSKKEVLEKSKDFVNYCFLNSRYKLPVDLAKRGNIIEAM 187


>gi|146307095|ref|YP_001187560.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp]
 gi|145575296|gb|ABP84828.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
          Length = 252

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 32/149 (21%)

Query: 2   ATLFIDFETRSPI------------------DLTKCGICKYA-EDVCVILFAFGFDDHPV 42
             + +D ET                       LT      Y   D  +   A        
Sbjct: 9   RYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPDREIDEGAIAVHGITN 68

Query: 43  ELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR--------W 93
           E   D      +     E +      ++ HN+ F+   +   F L     R         
Sbjct: 69  EYVADKPRFRDVADEFYEFI--KGAQLIIHNAAFDVGFINNEFALLGQSERADVSDYCSV 126

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSS 120
           + TL++AR        +L A+ +   + +
Sbjct: 127 LDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|323358024|ref|YP_004224420.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
 gi|323274395|dbj|BAJ74540.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
           StLB037]
          Length = 405

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 46/208 (22%), Gaps = 23/208 (11%)

Query: 69  VAHNSYFERTVLKA---CFNLDIP-IHRWICTL-VLARSNGLPSALKAVGEALKLSSQKM 123
           VAHN+ F+   L        L  P +  W+CT+ +         +L     A+  + Q  
Sbjct: 87  VAHNASFDARFLAHSMEHAGLACPDLAYWMCTMQLAGTFLQGNRSLADCSAAIGYAMQNA 146

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL-SSKE 182
                                 +           GE+       T  + +          
Sbjct: 147 HRASADALAAAALLRAYLGAGHDPAWWDGWLATPGEWPDEPFDTTAWLARTDSDTAPRSV 206

Query: 183 QELWYLDQTIN---------DRGYCVDVALAHTL--------NQIVDVERTKLDQELESL 225
            E  ++D   +         D    +D  L                  E       +  L
Sbjct: 207 LERLHVDVATDAIDDGALNLDYLALLDRVLLDRYMSATETDDLIRFAAELNLSSTAVRRL 266

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLED 253
                            L  +  + +  
Sbjct: 267 HRAYFDGLVSAAWADDHLTADEWVDIRK 294


>gi|237729355|ref|ZP_04559836.1| DNA polymerase II [Citrobacter sp. 30_2]
 gi|226909084|gb|EEH95002.1| DNA polymerase II [Citrobacter sp. 30_2]
          Length = 783

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 68/238 (28%), Gaps = 61/238 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGI-CKYAEDVCVILFA---FGFDDHPVELWDCVHDPVMPQVL 57
             + +D ET    +L   G+       V ++  A       D  +E       P + + L
Sbjct: 151 KWVSLDIETTRHGELYCIGLEGCGQRIVYMLGPANGDASTLDFELEYV--ASRPQLLEKL 208

Query: 58  KEALE--NTDVTIVAHN-SYFERTVLKACF-NLDIPIHRWICT----------------- 96
            + +   + DV  +  N   F+  VL+       IP+     +                 
Sbjct: 209 NDWIARHDPDVI-IGWNVVQFDLRVLQKHAERYRIPLRFGRDSSELEWREHGFKNGVFFA 267

Query: 97  -----LVL--------ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
                L++        A  N    +L+ V + L      + EGK                
Sbjct: 268 QAKGRLIIDGIEALKSAFWNFSSFSLETVSQEL------LGEGKS----IDNPWDRMDEI 317

Query: 144 DRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           DR     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 318 DRRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERSTVNGLPVDR 365


>gi|322419698|ref|YP_004198921.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18]
 gi|320126085|gb|ADW13645.1| Exonuclease RNase T and DNA polymerase III [Geobacter sp. M18]
          Length = 314

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 22/114 (19%)

Query: 4   LFIDFETRSPI----DLTKCGICKYAEDV---CVILFA--FGFDDHPVELWD-------- 46
           + +D ET         + + GI  +  D     +   +  +   + P             
Sbjct: 57  ICLDTETTGLNHKEDKVIELGIVAFEFDPLSGEIYRISDRYSGFEDPGFPIPPEVREITG 116

Query: 47  ----CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                V          + L      ++AHN+ F+R  ++  F        W CT
Sbjct: 117 ISDEMVRGQAFDDAFVDLLAGKADLVIAHNAAFDRKFVETRFP-AFKKLPWACT 169


>gi|239986791|ref|ZP_04707455.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           11379]
 gi|291443743|ref|ZP_06583133.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
 gi|291346690|gb|EFE73594.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 16/98 (16%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---L 86
           D  PV +     D        P + + L   L +    +VAHN+ F+ +++   +    +
Sbjct: 64  DPGPVWIHGLTSDVLEGAPLFPEVAEELSARLAD--RVLVAHNAAFDWSMIAREYARASV 121

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQ 121
             P+ + +CT+ LA+   LP     L ++     +  Q
Sbjct: 122 VAPVEQRLCTIALAKELRLPLPNHKLASLAAHFGVVQQ 159


>gi|239940309|ref|ZP_04692246.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
           15998]
          Length = 341

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 16/98 (16%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---L 86
           D  PV +     D        P + + L   L +    +VAHN+ F+ +++   +    +
Sbjct: 62  DPGPVWIHGLTSDVLEGAPLFPEVAEELSARLAD--RVLVAHNAAFDWSMIAREYARASV 119

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQ 121
             P+ + +CT+ LA+   LP     L ++     +  Q
Sbjct: 120 VAPVEQRLCTIALAKELRLPLPNHKLASLAAHFGVVQQ 157


>gi|182439459|ref|YP_001827178.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780122|ref|ZP_08239387.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178467975|dbj|BAG22495.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660455|gb|EGE45301.1| DNA polymerase III, epsilon subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 341

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 16/98 (16%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---L 86
           D  PV +     D        P + + L   L +    +VAHN+ F+ +++   +    +
Sbjct: 62  DPGPVWIHGLTSDVLEGAPLFPEVAEELSARLAD--RVLVAHNAAFDWSMIAREYARASV 119

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQ 121
             P+ + +CT+ LA+   LP     L ++     +  Q
Sbjct: 120 VAPVEQRLCTIALAKELRLPLPNHKLASLAAHFGVVQQ 157


>gi|73667124|ref|YP_303140.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
 gi|72394265|gb|AAZ68542.1| DNA polymerase III, epsilon subunit :DNA polymerase 3, epsilon
           subunit [Ehrlichia canis str. Jake]
          Length = 239

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 66/218 (30%), Gaps = 42/218 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-------------------PV 42
             + +D ET         G  +  E  CV L    F                        
Sbjct: 8   REVVLDTETTGLDP---DGGDRIIEIGCVELIDRVFTGKVFHEYINPERDIPYYATKIHG 64

Query: 43  ELWDCVHDPVMPQVLK-EALE--NTDVTIVAHNSYFERTVLKACFNLDIPIH-----RWI 94
              D + D      +  + LE  N  V ++ HN+ F+   +K   +  I        + +
Sbjct: 65  ITIDMLKDKPKFSEIADKFLEFVNNSVLVI-HNAGFDIKFIKMELD-KIQKDYDSDFQVV 122

Query: 95  CTLVLARSNGLPSA--LKAVGEALKLSSQKMEEGKELIARFCKGETHE---CLYDRNKPN 149
            TL+LAR      +  L A+     +S Q  +    L+     G+ +        R+   
Sbjct: 123 DTLILARKKFPGVSSTLDALCRRFNISLQDRKFHGALLDATLLGKVYVQLMGGLQRSLDF 182

Query: 150 ----HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
               +          C  DV +    ++  E   ++ +
Sbjct: 183 SYSNNIIDTSNINNQC-EDVAIEPRFYEVSEEEITQHK 219


>gi|121606814|ref|YP_984143.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
 gi|120595783|gb|ABM39222.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
          Length = 530

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 50/157 (31%), Gaps = 20/157 (12%)

Query: 504 ERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYM----KKDKNNLI 559
            +  K     ++   +L      A  + +E GK     ++      +     ++   N  
Sbjct: 365 RKFAKRLFLSYAYGMKLNRISDAAHAKGVERGKVKEFFRKLTTFEKWKADLQEQFHKNGC 424

Query: 560 LMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATK 619
           +    G  L        R+     + +  R           +VQ  +  I  + ++   K
Sbjct: 425 ISTSEGNFLR-------RNVTGQLSEKEKRSCISQ------VVQGTASLIFKKALLALDK 471

Query: 620 -AGYDIVLTVHDEIVCE--TPDTDEFNASMLYHLMTS 653
             G+ I++ +HD ++ E            +   +MT 
Sbjct: 472 IDGFRILVPMHDAVLVEHSAHLDPALLVDVFSQVMTD 508


>gi|310789378|gb|EFQ24911.1| DNA polymerase family A [Glomerella graminicola M1.001]
          Length = 1148

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 52/192 (27%), Gaps = 11/192 (5%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   ++S V A  G   V AD+   E
Sbjct: 675 PQIIPMGTITRRAVENTWLTASNAKKN------RVGSELKSMVKAPPGYSFVGADVDSEE 728

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   ++        T       R   KV      Y
Sbjct: 729 L-WIASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTASILGITRNDAKVFNYGRIY 787

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K   ++      NL+             + +  +     + +        + F+  
Sbjct: 788 GAGLKFAGQLLRQFNPNLSEKETNETAARLYAKTKGTKTNRSVLSKRPFWRGGTESFLFN 847

Query: 502 ACERVKKAWRQK 513
             E      R +
Sbjct: 848 KLEEFAAQERPR 859


>gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547]
 gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus
           sedentarius DSM 20547]
          Length = 584

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 40/144 (27%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVE---------------LWDCVHD--- 50
           T    DL   G    + D  +  F A       V                    +     
Sbjct: 26  TFVVFDLETTGTS--SADSEITEFGAVKVRGGEVVGEFQTLVRPAAGIPPYIQVLTGITT 83

Query: 51  ---------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLV 98
                      +     E + +    +VAHN+ F+   ++          P +  + T+ 
Sbjct: 84  AMVSAAPSIEQVLPNFLEFVGDA--VLVAHNARFDTAFVRRACERTGRPAPGNPVLDTVH 141

Query: 99  LARSNG-----LPSALKAVGEALK 117
           LAR            L  +    +
Sbjct: 142 LARQLLPRPEVPNHKLSTLAAYFR 165


>gi|164655640|ref|XP_001728949.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966]
 gi|159102837|gb|EDP41735.1| hypothetical protein MGL_3943 [Malassezia globosa CBS 7966]
          Length = 849

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 52/174 (29%), Gaps = 28/174 (16%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMPQVLKEALENTDVT 67
           T   +DL       Y   VC++  +  + D    + D + D      ++L  A  + D  
Sbjct: 269 TEIAVDLEHHNQRSYQGIVCLMQISTRWGD---WIVDTLVDEVRESAELLNTAFTHPDKV 325

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLSSQKMEE 125
           +V H +  +   L+      + +     T   AR+    + +L  +        + K  +
Sbjct: 326 LVLHGADHDILWLQRDLG--LYVTNLFDTFQAARALQFGALSLAFLLLRYTNFEADKRFQ 383

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             +                R  P      R    Y + D      ++  L    
Sbjct: 384 TADW-------------RIRPLP------REMLFYARSDTHALLYVYDCLRNEL 418


>gi|148973897|ref|ZP_01811430.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3]
 gi|145965594|gb|EDK30842.1| DNA polymerase III, alpha subunit [Vibrionales bacterium SWAT-3]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 44/152 (28%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------- 43
            + +DFET         G+     D  + + A    +  V                    
Sbjct: 9   VIVLDFETT--------GLSPNMGDRAIEIGAVKLVNGEVVDTFQQLMNPGFRVSGFIEG 60

Query: 44  LWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHR 92
                +           +     + ++++ +  VAHN+ F++  L A       D    +
Sbjct: 61  YTGITNRMLSTAASCGEVMDEFADFIQDSQL--VAHNASFDKRFLDAELDYIGRDYN-GQ 117

Query: 93  WICTLVLARSNG---LPSALKAVGEALKLSSQ 121
           + C++++AR          L  +     + + 
Sbjct: 118 FACSMLIARRLIQDAPTHKLGDLVRFKSIDND 149


>gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 330

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 41/138 (29%), Gaps = 24/138 (17%)

Query: 6   IDFETRSPI-DLTKCGICKYAEDVC-------VILFAFGFDDHPVELWDCVHD------- 50
           +D ET     D        Y  D           L     D  PV +     D       
Sbjct: 24  VDVETTGLARDDRIVSAAVYRLDAQGNVEDHWYTLVNPERDPGPVWIHGLTTDVLAGAPL 83

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI---CTLVLARSNGLP 106
            P +       L      +VAHN+ F+  ++   +             CT+ LA+   LP
Sbjct: 84  FPEIAAEFAARL--DGRVLVAHNAMFDWQMIAREYARAESAAPVRQRLCTIALAKELSLP 141

Query: 107 ---SALKAVGEALKLSSQ 121
                L+++     +  Q
Sbjct: 142 LPNHKLESLAAHFGVVQQ 159


>gi|322709296|gb|EFZ00872.1| DNA polymerase gamma [Metarhizium anisopliae ARSEF 23]
          Length = 1090

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 54/194 (27%), Gaps = 11/194 (5%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ V A +G   V AD+   E
Sbjct: 616 PQVIPMGTITRRAVENTWLTASNAKKN------RVGSELKAMVKAPKGYCFVGADVDSEE 669

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   ++        T       R   KV      Y
Sbjct: 670 L-WIASLVGDATFKLHGGNAIGFMTLEGTKAAGTDLHSRTAGILGITRNDAKVFNYGRIY 728

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      +L+    +   +      +  +   + +          + F+  
Sbjct: 729 GAGLKFAATLLRQFNPSLSERQTMEVASRLYANTKGTKTNRKVIHNKPFWRGGTESFVFN 788

Query: 502 ACERVKKAWRQKHS 515
             E   +  R +  
Sbjct: 789 KLEEFAEQERPRTP 802


>gi|312172621|emb|CBX80877.1| Ribonuclease D [Erwinia amylovora ATCC BAA-2158]
          Length = 369

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 60/242 (24%), Gaps = 48/242 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-- 56
           L +D E     T                   + L    +D   + L D +    +     
Sbjct: 21  LALDTEFVRTRTYY---------------PRLGLIQL-YDGETICLIDPL---PITDWTP 61

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            ++ L +  V    H    +  V +  F   +     I T +LA  +G P +        
Sbjct: 62  FRDLLLDQQVIKYLHAGSEDLEVFQHEFG--VLPQPMIDTQILAAFSGRPLS-------- 111

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                    G   I     G   +    R     R        Y   DV     I ++L 
Sbjct: 112 --------CGFATIVESFTGIVLDKSESRTDWLARPLSEKQCRYAAADVFYLLPIAEKLV 163

Query: 177 PLSSKEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
             +    ++                 +    A+         R +    L  +    +  
Sbjct: 164 AETEAAGQMAAALDECRLLCQRRTSVLKPQEAYREIANAWQLRPRQLAALRQMAAWRLEV 223

Query: 233 SR 234
           +R
Sbjct: 224 AR 225


>gi|297156498|gb|ADI06210.1| ribonuclease D [Streptomyces bingchenggensis BCW-1]
          Length = 424

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 27/180 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D  +    +Y +   ++            +            L +A+ + +   V H +
Sbjct: 64  VDAERASGYRYGQRAYLVQLRRA-GAGTALIDPVGCPD--LSGLGDAIADAE--WVLHAA 118

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIAR 132
             +   L+   ++ +   R   T +  R  G     L A+ E   +    +E+G   +  
Sbjct: 119 TQDLPCLR---DIGMLPGRLFDTELAGRLAGFARVGLGAMVE--NILGYALEKGHSAVDW 173

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
             +                + W     Y   DV +  ++   LE   +++ +L +  Q  
Sbjct: 174 STRPL-------------PDPW---LHYAALDVELLVDLRDALEEELTRQGKLNWAHQEF 217


>gi|297571327|ref|YP_003697101.1| DNA polymerase III subunit epsilon [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931674|gb|ADH92482.1| DNA polymerase III, epsilon subunit [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 597

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 27/138 (19%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH---PVELWDC--------V 48
           L +D ET         LT+ G  K      +  F    +     P  +            
Sbjct: 48  LVVDVETTGEKPGLHSLTEIGAVKVRGGTVIGEFGSLVNPGVPIPAFITRLTGITTGMVA 107

Query: 49  HDPVMPQVLKEALE----NTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLAR 101
             P + +VL   +E    + D+  VAHN+ F+   L    +   L  P  + I T+ L+R
Sbjct: 108 TAPSLGEVLVSFIEFVGGDPDLIFVAHNAPFDMGQLRGAASALGLAFPNRKVIDTVKLSR 167

Query: 102 SNG-----LPSALKAVGE 114
                       L  +  
Sbjct: 168 RVFMKDEVPNHKLSTLAR 185


>gi|297625374|ref|YP_003687137.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921139|emb|CBL55686.1| exonuclease [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 10/83 (12%)

Query: 46  DCVHDPVMPQVLKEALENT--DVTIVAHNSYFERTVL---KACFNLDIPIHRW--ICTLV 98
           D    P M   L   L +   D  +VAHNS F+   L        + IP      +CT+ 
Sbjct: 62  DVAAAPTM-AELAPGLVDKLRDRVVVAHNSSFDVGFLTAELRTAGMTIPPEPIPSVCTMR 120

Query: 99  LA--RSNGLPSALKAVGEALKLS 119
            +    +     L    EA  +S
Sbjct: 121 QSTRFLHARSRRLVDCCEAAGVS 143


>gi|292899665|ref|YP_003539034.1| ribonuclease D [Erwinia amylovora ATCC 49946]
 gi|291199513|emb|CBJ46630.1| ribonuclease D [Erwinia amylovora ATCC 49946]
          Length = 373

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 60/242 (24%), Gaps = 48/242 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-- 56
           L +D E     T                   + L    +D   + L D +    +     
Sbjct: 25  LALDTEFVRTRTYY---------------PRLGLIQL-YDGETICLIDPL---PITDWTP 65

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            ++ L +  V    H    +  V +  F   +     I T +LA  +G P +        
Sbjct: 66  FRDLLLDQQVIKYLHAGSEDLEVFQHEFG--VLPQPMIDTQILAAFSGRPLS-------- 115

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                    G   I     G   +    R     R        Y   DV     I ++L 
Sbjct: 116 --------CGFATIVESFTGIVLDKSESRTDWLARPLSEKQCRYAAADVFYLLPIAEKLV 167

Query: 177 PLSSKEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
             +    ++                 +    A+         R +    L  +    +  
Sbjct: 168 AETEAAGQMAAALDECRLLCQRRTSVLKPQEAYREIANAWQLRPRQLAALRQMAAWRLEV 227

Query: 233 SR 234
           +R
Sbjct: 228 AR 229


>gi|407653|gb|AAD12336.1| unknown [Mycoplasma genitalium]
          Length = 76

 Score = 42.4 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 69  VAHN-SYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQ 121
           VAHN   F+   L+  F   N+    +  I TL L+ +         L  +   LKL   
Sbjct: 7   VAHNGINFDLPFLQTQFEKYNIKPLTNPLIDTLCLSWALNPLFSSHTLSNICSKLKLEFD 66


>gi|306829204|ref|ZP_07462394.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           ATCC 6249]
 gi|304428290|gb|EFM31380.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           ATCC 6249]
          Length = 830

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 84/284 (29%), Gaps = 40/284 (14%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51
             + +D E   T S   + + GI    E+  ++   +  D +P E  D            
Sbjct: 8   RYVVVDLEATSTGSKAKIIQVGI-VVIENGEIVD-QYATDVNPHEPLDSHIKELTGLTDQ 65

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                     +   + E +++     VAHN  F+  +L         ++   R   T+ L
Sbjct: 66  RLAAAPEFSQVAGKIFELVKDG--VFVAHNVQFDANLLAEFLFFEGYELRTPRV-DTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQKMEE-------GKELIARFCKGETHECLYDRNKPN 149
           A+          L  + + L +  ++            EL+    +              
Sbjct: 123 AQVLYPQFEKYNLGILCQELGIELEQAHTALSDAQATAELLLYMRQKLFELPKGLLESLL 182

Query: 150 HREAWRLFGEYC-KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
                 L+  Y    +V   + +         +   L+   ++       +    A  ++
Sbjct: 183 DLADNLLYESYLVIEEVYQQQFL--LSSSELIELHGLFLRKESQALVPRKLSKDFAKNIS 240

Query: 209 QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
            +   ER +  +  E + + L        + +T L    G  L 
Sbjct: 241 LLGLEERPQQLEFAEKVEHLLEEHQTSFIQAQTGLGKTYGYLLP 284


>gi|300726853|ref|ZP_07060283.1| DNA polymerase III, alpha subunit [Prevotella bryantii B14]
 gi|299775966|gb|EFI72546.1| DNA polymerase III, alpha subunit [Prevotella bryantii B14]
          Length = 1235

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/186 (6%), Positives = 42/186 (22%), Gaps = 15/186 (8%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
             ++   ++      + + +   +    ++L+R     +  ++      +  +K     +
Sbjct: 735 IKYDIPCMEKYLKDTYGITVYQEQV---MLLSRQLASFTRGESDALRKAMGKKKKAIVDQ 791

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           +  +F K         +        W  F  Y       T           + +      
Sbjct: 792 MKPKFLKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHAT------CYSWVAYQTAYMKA 845

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
                     +      +    +     +            V+ S     +     +  G
Sbjct: 846 HYPAEFMAALMTRRF--SQITEITKLMEECKSMGIQTLGPDVNESYSGFGVNDKGEIRFG 903

Query: 249 LHLEDL 254
           L     
Sbjct: 904 LSAIKG 909


>gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 1517

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 43/145 (29%), Gaps = 35/145 (24%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAE-----------DVCV-ILFAF----GFDDHPV 42
           T+  D ET         + + G  K  E           +  + I F        DD  V
Sbjct: 492 TVVFDIETTGFHPQTDKIIEIGAVKLREGKICDRMDVFVNPEIPIPFRITQLTSIDDSMV 551

Query: 43  ELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTL 97
                       + L     +   D  IVAHN+ F+   +        L       + T+
Sbjct: 552 I------GERTIEELLPEFLSFCGDAVIVAHNADFDTGFIRENARRLGLSYDPT-VVDTV 604

Query: 98  VLARSNGLPSA---LKAVGEALKLS 119
            L+R          L  V + L +S
Sbjct: 605 GLSRLLLPKLNRFKLDTVAKELGIS 629


>gi|269794953|ref|YP_003314408.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
 gi|269097138|gb|ACZ21574.1| ribonuclease D [Sanguibacter keddieii DSM 10542]
          Length = 437

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 35/132 (26%), Gaps = 24/132 (18%)

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAV-GEALKLSSQ 121
             V  V H +  +   L       +       T + AR  G+    L AV  E L L   
Sbjct: 110 DGVEWVLHAASQDLPGLAEQH---LVPSAVFDTELAARILGMERVGLAAVVAEVLGLGLA 166

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K     +                R  P        +  Y   DV V  E+  R+      
Sbjct: 167 KEHSAVDW-------------STRPLP------DAWLLYAALDVEVLVELRDRMAERLEA 207

Query: 182 EQELWYLDQTIN 193
             +  +  Q   
Sbjct: 208 AGKTEWARQEFE 219


>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1406

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 43/143 (30%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD------------------- 46
            D ET    ++          +  +I           ++ D                   
Sbjct: 396 FDIETTGLSNI----------NDEIIEIG-AVKIKEGKIIDTFETFVNPKIPISSFITKL 444

Query: 47  -------CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICT 96
                      P + ++L + LE +++  +VAHN+ F+ + +K      ++ ++   + T
Sbjct: 445 TGIDESMVKDAPSIEEILPKFLEFSSNSVLVAHNANFDVSFIKSKAKKFNLNVNNTVLDT 504

Query: 97  LVLARSNG---LPSALKAVGEAL 116
           L L+R          L  + E L
Sbjct: 505 LELSRHLYKDLKNYKLDTLAEHL 527


>gi|229472397|gb|ACQ72713.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +    L++ A   K     + + +A + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAKKKGKEVRQAYIEAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + E   + +           ++ 
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRKII 145


>gi|149277808|ref|ZP_01883948.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
 gi|149231496|gb|EDM36875.1| DNA polymerase III, epsilon subunit [Pedobacter sp. BAL39]
          Length = 456

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 43/151 (28%)

Query: 1   MATLFIDFETR----SPIDLTKCGI-----CKYAEDVCVILFAFGFDDHPVELWDCVHDP 51
           M    +D ET     S   +T+  I         ++   ++       +P +     H  
Sbjct: 1   MLYAVVDIETTGGHASGNGITEISILVHNGHSIVQNYETLI-------NPGQYIP-AHIE 52

Query: 52  -----------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DIPIH 91
                             +   + + L +     VAHN  F+ + ++    +   ++   
Sbjct: 53  ALTGISNEMVETAPSFNQVAAEVYQLLHDK--IFVAHNVNFDFSFIRHQLGVCGYELSCR 110

Query: 92  RWICTLVLARSNGLPS---ALKAVGEALKLS 119
           +  CT+ ++R         +L  +  AL +S
Sbjct: 111 KL-CTVRMSRKIIPGHRSYSLGKLCAALNIS 140


>gi|310287702|ref|YP_003938960.1| Ribonuclease D [Bifidobacterium bifidum S17]
 gi|309251638|gb|ADO53386.1| Ribonuclease D [Bifidobacterium bifidum S17]
          Length = 428

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 22/131 (16%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D   + H+S  +        ++ +       T + AR  GL    L AV E         
Sbjct: 91  DAVWILHDSLQDLPGFA---DIGLAPQALFDTEIAARMLGLHRFGLAAVTEHY------- 140

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L   F K  +      R  P      R +  Y   DV +  E+ ++++     + 
Sbjct: 141 -----LGVTFAKEHSAADWSYRPLP------RDWRNYAALDVELLIELRRKMQRELKVQG 189

Query: 184 ELWYLDQTIND 194
           +  + D+    
Sbjct: 190 KDGWADEEFRY 200


>gi|221052342|ref|XP_002257747.1| dna binding protein [Plasmodium knowlesi strain H]
 gi|193807578|emb|CAQ38083.1| dna binding protein, putative [Plasmodium knowlesi strain H]
          Length = 470

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 57/191 (29%), Gaps = 24/191 (12%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL 109
              +P  +KE +E+  +  V H+   ++ + +   + DI I                  L
Sbjct: 168 KGKIPMCVKEIMEDEKIKKVCHDIRNDKDMFE---DQDIQIRNTFD-------------L 211

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                   L    ++    L+  F K    +     N  +H         Y   D   +R
Sbjct: 212 YDFCMKNYLYPPSLQF---LVKLFLKKNLEKHFRLSNWLSHDLK-EEQILYAAADAYASR 267

Query: 170 EIFKRLEPLSSKEQELWY-LDQTINDRGY---CVDVALAHTLNQIVDVERTKLDQELESL 225
           E++  L+ +    Q         +  +G       V   H +  I   E T   ++L   
Sbjct: 268 EVYMVLKEMGKVNQSCGENQLCDLPSKGRTNVTSSVKDPHRITAIDKEENTSDAKKLYCE 327

Query: 226 TYGLVSSSRCL 236
           T         +
Sbjct: 328 TPQEGEIKNSV 338


>gi|84389766|ref|ZP_00991318.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
 gi|84376867|gb|EAP93741.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
          Length = 255

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/168 (10%), Positives = 41/168 (24%), Gaps = 44/168 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF---------------------GFDDH 40
             + +D ET     +   G   Y     ++                            + 
Sbjct: 22  RIIVLDTETTG---MNTEGGPHYMGH-RIVEIGAVEIINRRLTGRHFHVYIKPDRAIQEE 77

Query: 41  PV--------ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFN 85
            +         L D      + +   + +      +VAHN+ F+          L +   
Sbjct: 78  AIGVHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNSAIG 135

Query: 86  LDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                 +   TL +A+         L  + +   + +        L+ 
Sbjct: 136 KTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLD 183


>gi|292489387|ref|YP_003532274.1| DNA polymerase II [Erwinia amylovora CFBP1430]
 gi|292898394|ref|YP_003537763.1| DNA polymerase II [Erwinia amylovora ATCC 49946]
 gi|291198242|emb|CBJ45348.1| DNA polymerase II [Erwinia amylovora ATCC 49946]
 gi|291554821|emb|CBA22673.1| DNA polymerase II [Erwinia amylovora CFBP1430]
          Length = 787

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 17/101 (16%)

Query: 4   LFIDFETRSPIDLTKCGI-CKYAEDVCVILFAFGFDDHPVELWD-----CVHDPVMPQVL 57
           + +D ET    +L   G+      DV ++      ++      D         P + + L
Sbjct: 155 VSLDIETTRHGELYCIGLEGCGQRDVYMLG----PENGDASQLDFHLEYVASRPQLLEKL 210

Query: 58  KEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR 92
                  + DV  +  N   F+  VL+     + + + + R
Sbjct: 211 NAWFARHDPDVL-IGWNVVQFDLRVLQKHADRYGIPLMLGR 250


>gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit
           [Lactococcus lactis subsp. lactis KF147]
          Length = 794

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            +   ++E L ++    VAHN+ F+  +L+  F    L+      + T+ LAR       
Sbjct: 74  EVAGKVRELLTDS--VFVAHNARFDYGLLEKSFLNAGLEFNEMLRVDTVDLARVFYPTFE 131

Query: 107 -SALKAVGEALKLSSQ 121
              L+++ E L L+  
Sbjct: 132 KYGLESLSEKLDLAHD 147


>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 1440

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 44/148 (29%), Gaps = 40/148 (27%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP-----VELWDCVH--DPVMPQ 55
            +  D ET               ED  + + A              L D     DP + +
Sbjct: 427 YVVFDTETTGLNA---------REDTLIEIAAVKVKAGQIVDTYATLIDPERSLDPKIVE 477

Query: 56  -------------VLKEALE-----NTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWI 94
                         L+EAL+          +VAHN+ F+   L  C     LD      I
Sbjct: 478 LTGITNEMVAGQPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPVI 537

Query: 95  CTLVLARSNGLP---SALKAVGEALKLS 119
            TL LAR          LK + +   + 
Sbjct: 538 DTLALARVLYPGEKNYKLKTLTQKFSVD 565


>gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
 gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
           12042]
          Length = 1451

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL--- 105
            + Q L + + +    +VAHN+ F+   L        +    +  + TL LAR+      
Sbjct: 466 EVAQELVDFIGDK--VLVAHNATFDYNFLNEELKRIGMAPLTNPVVDTLDLARALHSDRR 523

Query: 106 PSALKAVGEALKLSSQ 121
              L  +    +++  
Sbjct: 524 SYRLGNIARHYRITYD 539


>gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
 gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114]
          Length = 243

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 40/168 (23%), Gaps = 44/168 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-------------FGFDDHPVELWDCV 48
             + +D ET     +   G   Y     ++                F     P  L D  
Sbjct: 10  RIIVLDTETTG---MNFSGGPVYEGH-RIVEIGAVEIINRKLTGNHFHVYIKPDRLIDLE 65

Query: 49  ----HD------------PVMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFN 85
               H               +     E +      +VAHN+ F+          L     
Sbjct: 66  AIDVHGITDEFLYDKPEYKDIHDEFLEFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIG 123

Query: 86  LDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                 +   TL +A+         L  + E   + +        L+ 
Sbjct: 124 TTDQYCKITDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLD 171


>gi|27904727|ref|NP_777853.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
 gi|31340041|sp|Q89AN3|DPO3E_BUCBP RecName: Full=DNA polymerase III subunit epsilon
 gi|27904124|gb|AAO26958.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
          Length = 245

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 46/171 (26%), Gaps = 47/171 (27%)

Query: 2   ATLFIDFETRSPID---------LTKCGI-------------CKYAE--------DVCVI 31
             + +D ET              + + G                Y +           + 
Sbjct: 6   RKIVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIH 65

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL----- 86
                       L D      +     E + N+D+ I  HN+ F+   +    N+     
Sbjct: 66  GIT------DNFLLDKPKFHEISVKFLEYITNSDLII--HNAKFDVGFINYELNMINSDK 117

Query: 87  -DI-PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARF 133
             I      + TL LAR        +L A+    K++    +    LI   
Sbjct: 118 RKISDYCNVVDTLPLARQLFPGKKNSLDALCNRYKINVSHRDFHSALIDAK 168


>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
 gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
           2782]
          Length = 1433

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 36/153 (23%)

Query: 1   MAT-------LFIDFETRSPID----LTKCGICKYAEDVCVI-LFAFGFDDH---PVELW 45
           M         +  D ET         +T+ G  K   +  ++  F+   +     P  + 
Sbjct: 413 MKEHSLEDDFVVFDIETTGLNPHQDKITEIGAVK-VRNGQIVDRFSAFVNPGVSIPSFIV 471

Query: 46  -----------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIH 91
                      D      +     E ++     +VAHN+ F+   +K         +  +
Sbjct: 472 KLTGITDDMVKDAPPVEQVLNEFMEFIQ--GSVLVAHNANFDVGFIKQNAKLMGEKVK-N 528

Query: 92  RWICTLVLARSNGLP---SALKAVGEALKLSSQ 121
            +I TL L R          L  V + LK+  +
Sbjct: 529 PYIDTLELCRKMFPELGRYKLNIVAKHLKIELE 561


>gi|323498776|ref|ZP_08103762.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323316138|gb|EGA69163.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 210

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 51/159 (32%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELWDCVHD 50
            + +D ET S       L      K  ++         V L A    D + V++    H 
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAAAKIIDNRIITSRPFEVRLRAPQSLDSNSVKIHQIRHK 89

Query: 51  PVMP-----QVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP----------- 89
            ++      Q L + LE   +  +V ++  +++ +L    +      +P           
Sbjct: 90  DLVDGIDEKQALIQLLEFIGNRPLVGYHIRYDKKILDLACRRHLGFPLPNPLIEVSQIYH 149

Query: 90  -------IHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
                   + +              +L+A+ + L L  Q
Sbjct: 150 DKLERHLPNAYFD-----------LSLEAICKHLDLPMQ 177


>gi|225861294|ref|YP_002742803.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230625|ref|ZP_06964306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255368|ref|ZP_06978954.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503192|ref|YP_003725132.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|225726410|gb|ACO22261.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238787|gb|ADI69918.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae TCH8431/19A]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLEPRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|213408214|ref|XP_002174878.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002925|gb|EEB08585.1| exosome complex exonuclease RRP6 [Schizosaccharomyces japonicus
           yFS275]
          Length = 782

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 48/184 (26%), Gaps = 23/184 (12%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69
           T   +DL       Y+    V L      +    + D +      + L     +  +  V
Sbjct: 237 TEIAVDLEHHDYRSYS--GFVCLMQISTRNQD-WIVDTLELREELECLNIVFTDPKIIKV 293

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            H +  +   L+  F   + +     T                 +AL      +     L
Sbjct: 294 LHGATMDVIWLQRDFG--LYLVGLFDT----YY---------ATKALGFEGHGLAF---L 335

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-KRLEPLSSKEQELWYL 188
           + ++C+ E  +     +        +   +Y + D      +F      L  +       
Sbjct: 336 LKKYCQFEADKRYQMADWRIRPLP-KEMLKYAQSDTHFLLYVFDCLRVELLEQSSRRKED 394

Query: 189 DQTI 192
               
Sbjct: 395 LMQY 398


>gi|186475443|ref|YP_001856913.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
 gi|184191902|gb|ACC69867.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
          Length = 392

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 34/145 (23%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWD--------CVH 49
            +F+D ET         +T+ G+ +   +      + +     P +             +
Sbjct: 15  IVFVDLETTGGSVGDHRITEVGVVEVGPN----GVSSWTTLVDPGQPIPPFIQQLTGITN 70

Query: 50  D--------PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLV 98
           D          +   L   L       +AHN+ F+R  L+               +CT+ 
Sbjct: 71  DMVRGAPTFEAIAADLFARL--DGKLFIAHNASFDRGFLRSEFQRAGFAFNP-DVLCTVR 127

Query: 99  LARSNGL---PSALKAVGEALKLSS 120
           L+R+         L A+ E   L  
Sbjct: 128 LSRALFPAEKRHGLDALVERHALMP 152


>gi|271967979|ref|YP_003342175.1| ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
 gi|270511154|gb|ACZ89432.1| Ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
          Length = 408

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 42/168 (25%), Gaps = 27/168 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D  +    +Y+    ++            +            L   L   +V  V H +
Sbjct: 43  VDAERASGYRYSGRAYLVQLRRA-GAGSALIDPTYCPD--LSELDTVLAGAEV--VLHAA 97

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIAR 132
             +   L     L         T +  R  G     L  + E   +   K+E+G      
Sbjct: 98  SQDLPCLAE---LGFHPRELFDTELAGRLLGYERVGLGMMVE--NVLGLKLEKGHSAADW 152

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
             +                E W     Y   DV V  E+   L     
Sbjct: 153 STRPL-------------PEDW---LRYAALDVEVLVELRDVLHEELK 184


>gi|15643262|ref|NP_228306.1| DNA polymerase III, epsilon subunit, putative [Thermotoga maritima
           MSB8]
 gi|4981007|gb|AAD35581.1|AE001726_15 DNA polymerase III, epsilon subunit, putative [Thermotoga maritima
           MSB8]
          Length = 189

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLA 100
           + +      +  + ++ +      +V HN+ F+ T L             + +I TL L+
Sbjct: 73  IVEAPDMDTVYDLFRDYV--KGTVLVFHNANFDLTFLDMMAKETGNFPITNPYIDTLDLS 130

Query: 101 RSN-GLPSALKAVGEALKL 118
               G P +LK + E L +
Sbjct: 131 EEIFGRPHSLKWLSERLGI 149


>gi|54297294|ref|YP_123663.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
 gi|53751079|emb|CAH12490.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
          Length = 233

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 34/150 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--------- 51
           M  + +D ET     +      +  E  C+ L           ++               
Sbjct: 1   MRQVILDTETTG---IGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57

Query: 52  ----VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLD---IPIHR 92
                  Q  K   ++             ++ HN+ F+   L         +       R
Sbjct: 58  GISTEFLQD-KPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCR 116

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL+LAR        +L A+ +  ++  
Sbjct: 117 ILDTLILAREKHPGQRNSLDALCKRYEIDH 146


>gi|104773741|ref|YP_618721.1| putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116513740|ref|YP_812646.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300813077|ref|ZP_07093455.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313123346|ref|YP_004033605.1| DNA polymerase iii, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|103422822|emb|CAI97474.1| Putative exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|116093055|gb|ABJ58208.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300495918|gb|EFK31062.1| exonuclease [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312279909|gb|ADQ60628.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325125397|gb|ADY84727.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
 gi|325684506|gb|EGD26670.1| exonuclease [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 178

 Score = 42.4 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 25/142 (17%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAEDVCVILF--AFGFDDHPVELWDCVHDP 51
           M  + +DFET          + L      K  +    +       FD   V++ D   + 
Sbjct: 2   MNFVAMDFETANQHPASACSLALVLVRESKIIDRFYTV-INPQMAFDAQQVKVHDITAED 60

Query: 52  --------VMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
                    +   ++   +   + + AHN+ F+  V+K     + +  P +  + +L ++
Sbjct: 61  VAGAPTMAEVWPKIQPLFQ-PGMLVAAHNARFDCNVMKQSLARYGIAEPHYLVLDSLKVS 119

Query: 101 RSNGLP---SALKAVGEALKLS 119
           R          L  V + L + 
Sbjct: 120 RELEPGLDNYQLNTVSDLLGVE 141


>gi|291295885|ref|YP_003507283.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
 gi|290470844|gb|ADD28263.1| DNA-directed DNA polymerase [Meiothermus ruber DSM 1279]
          Length = 267

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
           D      + +     L+N   T++  N+ F+   L+         +  +  + T+  AR 
Sbjct: 149 DAADIYTVLEEAWPLLDNA--TLIIQNASFDLGFLQPRFKRLGYRLD-NPVVDTIHWARK 205

Query: 103 NGLP---SALKAVGEALKLSS 120
                    L ++  A  L  
Sbjct: 206 ALPGLTKRGLDSLAWAFDLGP 226


>gi|168492961|ref|ZP_02717104.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183577104|gb|EDT97632.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC3059-06]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     +   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVENGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|163937891|ref|YP_001642777.1| DNA polymerase I-like protein [Bacillus weihenstephanensis KBAB4]
 gi|163865746|gb|ABY46802.1| DNA polymerase I-like protein- 3'-5' exonuclease and polymerase
           domains [Bacillus weihenstephanensis KBAB4]
          Length = 594

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 9/131 (6%)

Query: 201 VALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH----LEDLTE 256
                   Q +D     L++E   L             +   ++   G+       D  +
Sbjct: 456 KDNVKKYKQELDEFIRILNEEDVDLF-IKTFEFSNRNHIAYLIYDHLGIKDRTHRIDKGK 514

Query: 257 T--TCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
              T  +VL    +       +        +     ++ + +AM +DGR        G +
Sbjct: 515 KRGTSTKVLEMYYEDEEALAPLAVVA-EFQKLLGSFVSKIPKAMEADGRFHSKF-DSGGT 572

Query: 315 RTGRWSGCVFP 325
            TGR+S   + 
Sbjct: 573 TTGRYSSSAYN 583



 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 60/226 (26%), Gaps = 31/226 (13%)

Query: 52  VMPQVLKEALENTDVTIVAH--NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP--- 106
            +  ++   L N D     H  ++ ++  +        I    W  +L            
Sbjct: 216 RVLDMITPYLSNKDHGKSFHMGSARYDLHI-AENDGYTIDGCVW-DSLDAMYIMTEHLNS 273

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
             LK + +            + L          +    R          + G Y   DV 
Sbjct: 274 YGLKPLIQRYG--------QRYLGIENEVYTFDDLFGKR--SPAPFNTLIVGIYAIYDVY 323

Query: 167 VTREI---FKRLEPLSSKEQELW--------YLDQTINDRGYCVDVALAHTLNQIVDVER 215
              ++          + K  + +         +D  +   G+ VD+     L +   V+ 
Sbjct: 324 YGWKLTEWQFETMKKTDKLLDCYALIDSKLSQVDAYMVRSGFNVDLDEFAQLEKEFTVKV 383

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQR 261
            +    + S         R   K+   L  +     +   +T  ++
Sbjct: 384 DEAIDAVFSTYNIDDDFLR---KMSLTLNGKKIQDWKSKQKTRIEK 426


>gi|332202666|gb|EGJ16735.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA41317]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLEPRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|312864644|ref|ZP_07724875.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei
           F0415]
 gi|311099771|gb|EFQ57984.1| putative ATP-dependent DNA helicase DinG [Streptococcus downei
           F0415]
          Length = 823

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 28/142 (19%)

Query: 2   ATLFIDFETRS---PIDLTKCGICKYAEDVCVIL-FAFGFDDHPV---ELWDCV------ 48
               +D E  S      + + GI    E   ++  +    + H      + D        
Sbjct: 9   KYAVVDLEATSASTTAQIIQVGI-VIVEQGQIVQTYQTDVNPHEALTQHIIDLTGITDQQ 67

Query: 49  -----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLA 100
                    +   + + +++     VAHN  F+  +L         ++   R   T+ L+
Sbjct: 68  LAQAPDFSQVAGDIFQLIQD--CIFVAHNVKFDANLLAEQLFLEGYELRTPRV-DTVELS 124

Query: 101 RSNGLP---SALKAVGEALKLS 119
           +          L  + + L L 
Sbjct: 125 QVFFPTLERYRLSDLAKYLDLD 146


>gi|294673890|ref|YP_003574506.1| exonuclease [Prevotella ruminicola 23]
 gi|294473761|gb|ADE83150.1| exonuclease [Prevotella ruminicola 23]
          Length = 163

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 23/122 (18%)

Query: 1   MATLF-IDFETRSPIDLTKCGICK-YAEDVCVILFAFG-FDDHPVEL--W---------- 45
           M     IDFET +    + C +      D  ++   +      P     W          
Sbjct: 1   MKDFAAIDFETANNERTSVCSVGVVIVRDGEIVDSFYSLIQPEPNYYNYWCSQVHGLTRQ 60

Query: 46  DCVHDPVMPQVLKEA---LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
           D    P+ P+V K+    +E   + +VAHN  F+ + LK    C+ +D P +++ CT V 
Sbjct: 61  DTEEAPIFPEVWKQIEPMIE--GLPLVAHNKAFDESCLKAVFRCYQMDYPDYQFYCTCVA 118

Query: 100 AR 101
           +R
Sbjct: 119 SR 120


>gi|54294270|ref|YP_126685.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
 gi|53754102|emb|CAH15575.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
          Length = 233

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 34/150 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--------- 51
           M  + +D ET     +      +  E  C+ L           ++               
Sbjct: 1   MRQVILDTETTG---IGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57

Query: 52  ----VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLD---IPIHR 92
                  Q  K   ++             ++ HN+ F+   L         +       R
Sbjct: 58  GISTEFLQD-KPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCR 116

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL+LAR        +L A+ +  ++  
Sbjct: 117 ILDTLILAREKHPGQRNSLDALCKRYEIDH 146


>gi|323498002|ref|ZP_08103011.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
 gi|323317047|gb|EGA70049.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
          Length = 247

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 43/167 (25%), Gaps = 42/167 (25%)

Query: 2   ATLFIDFETRSPID-----------------------LTKCGICKYAE-----DVCVILF 33
             + +D ET                            LT      Y +         +L 
Sbjct: 11  RIIVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPDRQIQPEAVLV 70

Query: 34  AFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFE-------RTVLKACFNL 86
             G  D    L D      + Q   E +      +VAHN+ F+         +L A    
Sbjct: 71  -HGITDE--FLVDKPEYQDVHQEFLEFI--KGAELVAHNAPFDTGFMDYEFEMLNAQIGK 125

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                +   TL +A+         L  + E   + +        L+ 
Sbjct: 126 TEDYCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 1406

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 43/143 (30%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD------------------- 46
            D ET    ++          +  +I           ++ D                   
Sbjct: 396 FDIETTGLSNI----------NDEIIEIG-AVKIKEGKIIDTFETFVNPKIPISSFITKL 444

Query: 47  -------CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICT 96
                      P + ++L + LE +++  +VAHN+ F+ + +K      ++ ++   + T
Sbjct: 445 TGIDESMVKDAPSIEEILPKFLEFSSNSVLVAHNANFDVSFIKSKAKKFNLNVNNTVLDT 504

Query: 97  LVLARSNG---LPSALKAVGEAL 116
           L L+R          L  + E L
Sbjct: 505 LELSRHLYKDLKNYKLDTLAEHL 527


>gi|332204813|gb|EGJ18878.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA47901]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLEPRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|312173552|emb|CBX81806.1| DNA polymerase II [Erwinia amylovora ATCC BAA-2158]
          Length = 787

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 17/101 (16%)

Query: 4   LFIDFETRSPIDLTKCGI-CKYAEDVCVILFAFGFDDHPVELWD-----CVHDPVMPQVL 57
           + +D ET    +L   G+      DV ++      ++      D         P + + L
Sbjct: 155 VSLDIETTRHGELYCIGLEGCGQRDVYMLG----PENGDASQLDFHLEYVASRPQLLEKL 210

Query: 58  KEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR 92
                  + DV  +  N   F+  VL+     + + + + R
Sbjct: 211 NAWFARHDPDVL-IGWNVVQFDLRVLQKHADRYGIPLMLGR 250


>gi|309702068|emb|CBJ01382.1| exodeoxyribonuclease X [Escherichia coli ETEC H10407]
 gi|323937102|gb|EGB33382.1| exonuclease [Escherichia coli E1520]
          Length = 220

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|255532547|ref|YP_003092919.1| DNA polymerase III subunit epsilon [Pedobacter heparinus DSM 2366]
 gi|255345531|gb|ACU04857.1| DNA polymerase III, epsilon subunit [Pedobacter heparinus DSM 2366]
          Length = 456

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 40/148 (27%), Gaps = 39/148 (26%)

Query: 1   MATLFIDFETRSPID------------------------LTKCGICKYAEDVCVILFAFG 36
           M    +D ET                             L   G    A    +   +  
Sbjct: 1   MLYAVVDIETTGGFASGNGITEISILVHDGREVVEAYETLINPGQEIPAYIETLTGIS-- 58

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRW 93
             +  V          +   +   L +     VAHN  F+ + +K        D+   + 
Sbjct: 59  --NEMVVTAPLFGG--VAAEIYAMLHDK--IFVAHNVNFDFSFIKHHLSLSGYDLRCKKL 112

Query: 94  ICTLVLARSNGL---PSALKAVGEALKL 118
            CT+ L+R         +L  +  AL +
Sbjct: 113 -CTVRLSRKLFPGYSSYSLGKLCNALNI 139


>gi|239992935|ref|ZP_04713459.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
          Length = 385

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 22/169 (13%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           +D H + L D +    M Q   + +ENT+V  V H+   +       F  D        T
Sbjct: 47  YDGHQLVLIDPLAIDNM-QPFIDLMENTEVVKVLHSCSEDIEAFLTAF--DTVPTPVFDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            +      +  +L                  +L+   C     +     +          
Sbjct: 104 QLAGSILDMGPSLG---------------YAKLVELLCDISLDKGESRTDWLARPL-REA 147

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
              Y   DV      +++L     +  ++ ++ Q I      VD   A 
Sbjct: 148 QLSYAANDVLYLLPCYQQLASKVQEAGKVHWIYQEI---ALLVDKKRAQ 193


>gi|171317951|ref|ZP_02907125.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
 gi|171096851|gb|EDT41725.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
          Length = 205

 Score = 42.4 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 43/153 (28%)

Query: 1   MATLF-IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-----CVHDPVMP 54
           M T+  +DFET         G  +  E   ++L          E+ D           +P
Sbjct: 1   MQTVAVLDFETTGLSP--NLG-DRATEIAVILL-------RDGEIVDRYQSLMNAGRRIP 50

Query: 55  QVLKEA--LENT--------------------DVTIVAHNSYFERTVLKACFNL--DIPI 90
             +     + N                     +  +VAHN+ F++   +A   +      
Sbjct: 51  SDVVALTGITNEMIASAPPVSQVMKEAAAFVGNHPVVAHNAGFDKRFWQAELGMLGMAAE 110

Query: 91  HRWICTLVLARSNGLP---SALKAVGEALKLSS 120
           H + CT+++AR          L ++ + L+L  
Sbjct: 111 HAFACTMLVARRIYPHARSHRLSSLADMLRLPQ 143


>gi|307717320|gb|ADN88713.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717330|gb|ADN88718.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717378|gb|ADN88742.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717380|gb|ADN88743.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717394|gb|ADN88750.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717396|gb|ADN88751.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP- 106
            V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL LAR      
Sbjct: 63  DVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELARFLYPHF 120

Query: 107 --SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               L  + +   +      +     E  A        +     N   H       GE
Sbjct: 121 KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSLNDYMGE 178


>gi|188025635|ref|ZP_02959307.2| hypothetical protein PROSTU_01143 [Providencia stuartii ATCC 25827]
 gi|188022569|gb|EDU60609.1| hypothetical protein PROSTU_01143 [Providencia stuartii ATCC 25827]
          Length = 783

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 69/215 (32%), Gaps = 56/215 (26%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-----ELWDCVHDPVMPQ 55
           +  + +D ET    +L   G+    ++   ++F  G +          L      P +  
Sbjct: 152 IKAVSLDIETSQYGELYSIGLSGCGDN---VVFMLGPEQGSALNNTHRLVYVNSRPQLLD 208

Query: 56  VLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------WI--------- 94
            L E L+  + D   +  N   F+  VL+     + + + + R      W          
Sbjct: 209 KLNEWLQQYDPDAI-IGWNLIQFDLNVLQKHAERYGIPLQLGRQGKKLEWREHGFKQGVF 267

Query: 95  -------------CTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
                          L  A  N    +L+ V + L      + EGK + + + + +    
Sbjct: 268 FASAEGRLIIDGIDALKAATWNFPSFSLEFVAQDL------LGEGKAIDSPYDRMDEINR 321

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +  +KP           Y   D  +   IF++ +
Sbjct: 322 RFHHDKP-------ALAHYNIQDCLLVHRIFEKTD 349


>gi|168484461|ref|ZP_02709413.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042316|gb|EDT50362.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae CDC1873-00]
 gi|332203958|gb|EGJ18025.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA47368]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVVLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|70729848|ref|YP_259587.1| DNA polymerase II [Pseudomonas fluorescens Pf-5]
 gi|68344147|gb|AAY91753.1| DNA polymerase II [Pseudomonas fluorescens Pf-5]
          Length = 786

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 18/93 (19%)

Query: 2   ATLFIDFETR-----SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC---VHDPVM 53
             + +D ET        I L  CG         V +     DD     +D         +
Sbjct: 153 KLVSLDIETSERGELYSIALEGCGQR------QVYMLGKARDDDSAVDFDLEFCASREQL 206

Query: 54  PQVLKEALE--NTDVTIVAHNS-YFERTVLKAC 83
            + L + L   + D   +  N   F+  VL   
Sbjct: 207 LERLNQWLAEHDPDAI-IGWNLVQFDLRVLHEH 238


>gi|332830561|gb|EGK03182.1| hypothetical protein HMPREF9455_00752 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1249

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSAL-KAVGEALKL-SSQKMEE 125
             ++  +++      + + +   +    ++L+R            + +A+      KM  
Sbjct: 749 ISYDIPIMERYLNDTYGITVYQEQV---MLLSRLLADFTRGQSDELRKAMGKKLIDKMNA 805

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            KE   +F  G T      +        W  F  Y 
Sbjct: 806 LKE---KFIAGGTKNGHDKKTLDKIWADWEKFASYA 838


>gi|289624730|ref|ZP_06457684.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 517

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 46/383 (12%), Positives = 106/383 (27%), Gaps = 68/383 (17%)

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
            K  I  F K      +  +          +  E    D           E  ++ E+ +
Sbjct: 106 IKSYIDIFQKKSPINEVILQTIGEALFNLSVKTELVAKD-------NNEWERYTTVERPV 158

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT---W 242
                +    G  +D        + ++ +     ++  +     +      + ++     
Sbjct: 159 ADYLISSAAAGIAIDTTRLRIHKENIEFDYYMALKQFSAKYDVPLELPSNDDIIRRLEPM 218

Query: 243 LFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG 302
            +   G+ +        + VL+        AI +   R  A   +V      + A+    
Sbjct: 219 GYDFLGVDV--------EYVLNFVPMNDNFAIDLLRLRKIAKSRSV------LNAIPLSQ 264

Query: 303 RLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISD 362
           +    +     S T R        QNL +                               
Sbjct: 265 KRIYPIVDCFGSITSRIYFKDPSLQNLAKHH----------------------------- 295

Query: 363 CVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPA 422
             R  ++  EG+     D    EA ++A ++G++  L+ +  G+                
Sbjct: 296 --RDILVPDEGRAFSYVDYEQYEAGIMAALSGDEKLLELYADGDLYKQVANDIFEG---- 349

Query: 423 QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFC 482
              + +R   K + L+  Y    +     A   G      A    T +  +++   E + 
Sbjct: 350 ---EGRRKEAKRLFLSYAYGMKNRHLIDAAFGYG------ADRRATKTFFKQFGKFEEWK 400

Query: 483 RWMQENHPEHAIEDLFIGTACER 505
             + ++  +       +G   +R
Sbjct: 401 ISVHDSFGKDQRIGTVLGNYLKR 423


>gi|271964195|ref|YP_003338391.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270507370|gb|ACZ85648.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 574

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 33/121 (27%), Gaps = 23/121 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYA---EDVCVIL---------------FAFGFDDHPVELW 45
           +  D ET              A       V+                 +         + 
Sbjct: 22  VVFDLETTGVSAGEHAITEIGAVKVRGGEVLGEFGTLVDPGSPIPPFISVLTGITDTMVV 81

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
                  +     E  E    T+VAHN+ F+   +K   A      P H  + T+VLAR 
Sbjct: 82  AAPKIESVLPSFLEFAE--GTTLVAHNAGFDLGFIKAACAAHGYPPPAHPVVDTVVLARK 139

Query: 103 N 103
            
Sbjct: 140 L 140


>gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1444

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/268 (10%), Positives = 66/268 (24%), Gaps = 43/268 (16%)

Query: 46  DCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
           D  + P + +    L E   +    ++AHN  F+  +L             + WI TL L
Sbjct: 462 DIRNAPTIEEFMPRLMEFFGDD--LLIAHNGRFDIGMLDKALERMGKSPISNPWIDTLPL 519

Query: 100 ARSNGL---PSALKAVGEALKLSSQK------MEEGKELIARFCKGETHECLYDRNKPNH 150
           +R          L AV     +            + + L   F               + 
Sbjct: 520 SRRLIPLQRSYRLGAVCRFYHIPYDTEAAHRADYDAEVLSHSFNVMLQDLIKKGFKTIDE 579

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL--- 207
                +   Y          + K  E L +  + +   +     +   +  +        
Sbjct: 580 VNDIEIEESYKHAFPYHMCVLAKTPEGLKNMFRLVSIANTKYFHQCDRIPRSELEFYREG 639

Query: 208 ---------NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
                    +++ ++  T+ ++EL               +   +L               
Sbjct: 640 LLFGSGCVNSKVFEIASTRDEEELREEIKFYDYIEIQPLEDAMYLVDRGKY--------- 690

Query: 259 CQRVLSSNKKLTPQAIQVFNNRMRASRS 286
                 S   +     ++        + 
Sbjct: 691 -----ESIDDIERIYKRIIKIAKEEKKL 713


>gi|158301896|ref|XP_321572.4| AGAP001549-PA [Anopheles gambiae str. PEST]
 gi|157012692|gb|EAA01810.4| AGAP001549-PA [Anopheles gambiae str. PEST]
          Length = 769

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 39/162 (24%), Gaps = 37/162 (22%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK- 110
            +PQ L + L + ++  V                    +  +      AR       LK 
Sbjct: 115 RIPQELYDLLNDDNIIKVG-------------------VSPYED----ARVLREDYRLKV 151

Query: 111 -------AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
                   + E   L    +      +               +     E      +Y   
Sbjct: 152 ESTLDLRYMAERAGLEPLGIARLANEV--LGLTLDKHWKVRCSDWESPELSDRQIKYAAS 209

Query: 164 DVTVTRE----IFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           D  V  E    +  +L P          L+Q + +    +D 
Sbjct: 210 DAHVAVEMFKKLSYKLVPHYPWTSRKVVLEQVLEEMDCFMDQ 251


>gi|327459895|gb|EGF06235.1| DNA polymerase III [Streptococcus sanguinis SK1057]
          Length = 814

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 72/282 (25%), Gaps = 46/282 (16%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVAKMLTL 183

Query: 155 RLFGEYC----KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLVIEEVYQTMP--DQQDKELQSCHGIFLRLPQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
              ER +  +    +   L        + +T L    G  L 
Sbjct: 242 GLEERPEQLKFARFMEEALDQQEPSFLEAQTGLGKTFGYLLP 283


>gi|315924662|ref|ZP_07920879.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621561|gb|EFV01525.1| exonuclease [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 178

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 14/116 (12%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIV 69
           T     L          +  +             +W+    P + + +   L  +   +V
Sbjct: 33  TDEFYSLVNPETYFDYFNTRLTGIC------EDAVWNAPTFPELWKTIAPML--SSGLLV 84

Query: 70  AHNSYFERTVLKAC---FNLDIPIH-RWICTLVLARSN--GLPSALKAVGEALKLS 119
           AHN+ F+  VLK C   + ++   H R++CT+ + R    G+   L  + +   ++
Sbjct: 85  AHNAVFDMGVLKRCLRDYRIEWKPHVRYLCTVQMGRRIIPGMSHKLNVLCDYYGIN 140


>gi|307610085|emb|CBW99626.1| hypothetical protein LPW_13941 [Legionella pneumophila 130b]
          Length = 233

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 34/150 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--------- 51
           M  + +D ET     +      +  E  C+ L           ++               
Sbjct: 1   MRQVILDTETTG---IGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVH 57

Query: 52  ----VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLD---IPIHR 92
                  Q  K   ++             ++ HN+ F+   L         +       R
Sbjct: 58  GISTEFLQD-KPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCR 116

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL+LAR        +L A+ +  ++  
Sbjct: 117 ILDTLILAREKHPGQRNSLDALCKRYEIDH 146


>gi|149010565|ref|ZP_01831936.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP19-BS75]
 gi|147765046|gb|EDK71975.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP19-BS75]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|330503134|ref|YP_004380003.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
 gi|328917420|gb|AEB58251.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
          Length = 252

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 32/149 (21%)

Query: 2   ATLFIDFETRSPI------------------DLTKCGICKYA-EDVCVILFAFGFDDHPV 42
             + +D ET                       LT      Y   D  +   A        
Sbjct: 9   RYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPDREIDEGAIAVHGITN 68

Query: 43  ELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR--------W 93
           E   D      +     E +      ++ HN+ F+   +   F L     R         
Sbjct: 69  EYVADKPRFREVADEFYEFI--KGAQLIIHNAAFDVGFINNEFALLGQSERADVSDYCSV 126

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSS 120
           + TL++AR        +L A+ +   + +
Sbjct: 127 LDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|311898875|dbj|BAJ31283.1| putative ribonuclease D [Kitasatospora setae KM-6054]
          Length = 411

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 56/226 (24%), Gaps = 37/226 (16%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           +D  +    +Y +     L            +            L  AL +T+   V H 
Sbjct: 50  VDAERASGYRYGQRAY--LIQLRRQGAGTALIDPIACPD--LTGLNAALADTE--WVVHA 103

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE-ALKLSSQKMEEGKELI 130
           +  +   L   F + +       T +  R  G P   L  + E  L LS  K        
Sbjct: 104 ATQDLPCL---FEVGMHPGVLFDTELAGRLAGFPRVGLGPMTENVLGLSLAKEHS----- 155

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP------LSSKEQE 184
                        D +     E W     Y   DV V  ++   LE             +
Sbjct: 156 -----------AVDWSTRPLPEPW---LRYAALDVEVLVDLRDALEAELDRQGKLDWAHQ 201

Query: 185 LWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLV 230
            +            VD     +    V   R         LT   +
Sbjct: 202 EFAALAAAPRPAPRVDPWRRTSQLHKVRRRRQLAAVREMWLTRDRI 247


>gi|308234071|ref|ZP_07664808.1| DNA polymerase III, epsilon subunit [Atopobium vaginae DSM 15829]
          Length = 1008

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 40/138 (28%), Gaps = 25/138 (18%)

Query: 2   ATLFIDFETRSP---IDLTKCGICKYAEDVCV-----------ILFAFGFDDHPVEL-WD 46
             + +D ET       D          E+  V                  +        D
Sbjct: 49  DIVALDTETTGLSHKNDQLTQIAAVKLEEGSVADEFTTFVNPSRPIPHNIEKLTNIYSVD 108

Query: 47  CVH---DPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
             H          L + +E +    I+AHN+ F+R  ++A  N       WI TL L+R 
Sbjct: 109 VEHAPTPQTAVARLADFVELDP---ILAHNASFDRAFIEAAQNDTCVSDTWIDTLALSRI 165

Query: 103 NGL---PSALKAVGEALK 117
                    L+ +     
Sbjct: 166 AFPALTSHKLQDLAYIFG 183


>gi|239503330|ref|ZP_04662640.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB900]
          Length = 459

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 28/181 (15%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDD-HPV 42
             L +D ET        D              LT   I  Y      +  +         
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVQVHGITDE 291

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP----IHRWICTL 97
            L D      +   L E L      I+AHN+ F+   L      + +P    +     TL
Sbjct: 292 FLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTDTL 349

Query: 98  VLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            LA++       +L A+    ++ ++       L+      + +  +         +A  
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409

Query: 156 L 156
            
Sbjct: 410 Q 410


>gi|237649440|ref|ZP_04523692.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae CCRI 1974]
          Length = 831

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 16  MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 65

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 66  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 125

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 126 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 184

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 185 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRK 244

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 245 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 303


>gi|328943468|ref|ZP_08240933.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829]
 gi|327491437|gb|EGF23211.1| ATP-dependent DNA helicase DinG [Atopobium vaginae DSM 15829]
          Length = 1011

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 40/138 (28%), Gaps = 25/138 (18%)

Query: 2   ATLFIDFETRSP---IDLTKCGICKYAEDVCV-----------ILFAFGFDDHPVEL-WD 46
             + +D ET       D          E+  V                  +        D
Sbjct: 52  DIVALDTETTGLSHKNDQLTQIAAVKLEEGSVADEFTTFVNPSRPIPHNIEKLTNIYSVD 111

Query: 47  CVH---DPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
             H          L + +E +    I+AHN+ F+R  ++A  N       WI TL L+R 
Sbjct: 112 VEHAPTPQTAVARLADFVELDP---ILAHNASFDRAFIEAAQNDTCVSDTWIDTLALSRI 168

Query: 103 NGL---PSALKAVGEALK 117
                    L+ +     
Sbjct: 169 AFPALTSHKLQDLAYIFG 186


>gi|115359655|ref|YP_776793.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
 gi|172064467|ref|YP_001812118.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
 gi|115284943|gb|ABI90459.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
 gi|171996984|gb|ACB67902.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
          Length = 205

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 43/153 (28%)

Query: 1   MATLF-IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-----CVHDPVMP 54
           M T+  +DFET         G  +  E   ++L          E+ D           +P
Sbjct: 1   MQTVAVLDFETTGLSP--NLG-DRATEIAVILL-------RDGEIVDRYQSLMNAGRRIP 50

Query: 55  QVLKEA--LENT--------------------DVTIVAHNSYFERTVLKACFNL--DIPI 90
             +     + N                     +  +VAHN+ F++   +A   +      
Sbjct: 51  SDVVALTGITNEMIASAPPVSQVMKEAAAFVGNHPVVAHNAGFDKRFWQAELGMLGMAAE 110

Query: 91  HRWICTLVLARSNGLP---SALKAVGEALKLSS 120
           H + CT+++AR          L ++ + L+L  
Sbjct: 111 HAFACTMLVARRIYPHARSHRLSSLADMLRLPQ 143


>gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
 gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus G9241]
          Length = 303

 Score = 42.4 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 75/277 (27%), Gaps = 34/277 (12%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 12  NYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 71

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L   +V  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 72  VSDAPTIEEVLPLFLAFLH-KNVI-VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 129

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                +     L+ +   L +         + I      +    + +  +   +    + 
Sbjct: 130 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASIEE--EAKRKSNTEVL 187

Query: 158 GEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            E    +      +  + +           YLD         + V         +     
Sbjct: 188 DETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTDILE 245

Query: 217 KLDQELESLTYGLV---SSSRCLEKLKTWLFLETGLH 250
              +E+ +         S       +   L     L 
Sbjct: 246 DDVKEICTSLACEPALKSEVGNTRIMLNCLEDVLKLE 282


>gi|282860304|ref|ZP_06269373.1| 3'-5' exonuclease [Prevotella bivia JCVIHMP010]
 gi|282586901|gb|EFB92137.1| 3'-5' exonuclease [Prevotella bivia JCVIHMP010]
          Length = 225

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 53/211 (25%), Gaps = 38/211 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L ID ETR      K GI        V L         V     ++   +   +   L
Sbjct: 46  DILGIDTETRPSF---KKGIRH-----KVALLQVST--REVCFLFRLNIIGITDSIIRLL 95

Query: 62  ENTDVTIVA---HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E+T V  +    H+   +  +L     +      +I   +      L            L
Sbjct: 96  EDTSVPKIGLSLHD---DFRMLNKR--VTFKPGYFID--LQDYVKDLG--------IHDL 140

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEP 177
           S QK+                    ++               Y   D      ++ +++ 
Sbjct: 141 SLQKL--------YANVFGEKIVKREQLTNWENTELTDKQKRYASTDAWTCINLYLKMKE 192

Query: 178 LSSKEQELWYLDQTINDRGYCVDVALAHTLN 208
              +  +   ++  +       D    +   
Sbjct: 193 -LKETGDYKLVENDLEPSNAPFDTVEVNAEI 222


>gi|169833275|ref|YP_001694265.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae Hungary19A-6]
 gi|168995777|gb|ACA36389.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae Hungary19A-6]
 gi|327390159|gb|EGE88502.1| putative dnaQ exonuclease/DinG family helicase [Streptococcus
           pneumoniae GA04375]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|149003435|ref|ZP_01828324.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP14-BS69]
 gi|237821000|ref|ZP_04596845.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758618|gb|EDK65616.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP14-BS69]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|119471754|ref|ZP_01614114.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Alteromonadales bacterium TW-7]
 gi|119445377|gb|EAW26665.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Alteromonadales bacterium TW-7]
          Length = 237

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 49/160 (30%), Gaps = 33/160 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILF---------------AFGFDDHPVELWD 46
             + +D ET       K G  +  E  CV L                    ++  +++  
Sbjct: 4   RQIVLDTETTGIDP--KQG-HRIIEIGCVELVNRRLTGNNFHVYINPQRSIEEEAIDVHG 60

Query: 47  CVH----DPVMPQVLKEALEN--TDVTIVAHNSYFE-------RTVLKACFNLDIPIHRW 93
             +    D  + + + +   +      +V HN+ F+         +L   F       + 
Sbjct: 61  ITNEFLRDKPLYRDIAQEFFDYIKGAELVIHNAPFDVGHMDNEFALLNQGFPNTHDYCQV 120

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           + TL +AR         L A+     + + K      L+ 
Sbjct: 121 LDTLKMARDLHPGQKNNLDALCRRYDIDNAKRTLHGALLD 160


>gi|301793959|emb|CBW36355.1| putative exonuclease [Streptococcus pneumoniae INV104]
          Length = 816

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLEPRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|170053309|ref|XP_001862614.1| DNA polymerase subunit gamma 1, mitochondrial [Culex
           quinquefasciatus]
 gi|167873869|gb|EDS37252.1| DNA polymerase subunit gamma 1, mitochondrial [Culex
           quinquefasciatus]
          Length = 1150

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 33/147 (22%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTL--------VLAR---SNGLPS--------- 107
           +V HN  ++R  ++  + L     R++ T+        V +                   
Sbjct: 248 VVGHNVSYDRARIREQYWLKSTGLRFVDTMSLHVCVSGVTSYQRAMLKSSKELPLEDLSW 307

Query: 108 ----ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
               +L  + +   L     +  KE               +   P  R  ++    YC G
Sbjct: 308 SSQSSLNNLADVYSLYCDGAKLDKE---------KRNLFVEGTLPEIRAEFQSLMSYCAG 358

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQ 190
           DV  TR +  +L PL  +         
Sbjct: 359 DVAATRNVLTKLFPLFLQRFPHPATLA 385


>gi|58579186|ref|YP_197398.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417812|emb|CAI27016.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 32/149 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-------------------P 41
           +  + +D ET     L   G  +  E  C+ L    F                       
Sbjct: 7   IREIALDTETTG---LDADGGDRIIEMGCIELIDRVFTGKVFHEYINPERDIPYYATKIH 63

Query: 42  VELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIPIH-----RWI 94
               D + D      + +   +   +  +V HN+ F+   +K   +  I        + +
Sbjct: 64  GITVDMLKDKPKFSEIADKFLDFIGNSVLVIHNAVFDIKFIKMELD-KIQKSYNSDFQVV 122

Query: 95  CTLVLARSNGLPSA--LKAVGEALKLSSQ 121
            TL+LAR      +  L A+ +   +S Q
Sbjct: 123 DTLILARKKFPGVSSTLDALCKRFNISLQ 151


>gi|323186850|gb|EFZ72169.1| exonuclease family protein [Escherichia coli RN587/1]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|118372761|ref|XP_001019575.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89301342|gb|EAR99330.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 881

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 35/137 (25%), Gaps = 19/137 (13%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            + D          L     + ++  V H +  +   L+  F + I       T   AR+
Sbjct: 294 YIVDVFSVWKSLHKLNAVTTDKNIVKVLHGADMDIQWLQRDFGIYI--VNLFDTGQAART 351

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
                ++ +   A             L+    K  T +     +             Y +
Sbjct: 352 L----SMPSYALAY------------LLQSISKVPTDKKYQLADWRIRPLPRE-MISYAR 394

Query: 163 GDVTVTREIFKRLEPLS 179
            D      I+  L    
Sbjct: 395 SDTHYLLSIYDNLRIQL 411


>gi|148985845|ref|ZP_01818939.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|148990415|ref|ZP_01821581.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|168575465|ref|ZP_02721401.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae MLV-016]
 gi|194397188|ref|YP_002037447.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae G54]
 gi|307067407|ref|YP_003876373.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200]
 gi|147921991|gb|EDK73115.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|147924320|gb|EDK75413.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|183578476|gb|EDT99004.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae MLV-016]
 gi|194356855|gb|ACF55303.1| Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG
           [Streptococcus pneumoniae G54]
 gi|301799817|emb|CBW32386.1| putative exonuclease [Streptococcus pneumoniae OXC141]
 gi|306408944|gb|ADM84371.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200]
          Length = 816

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|82543665|ref|YP_407612.1| exodeoxyribonuclease X [Shigella boydii Sb227]
 gi|81245076|gb|ABB65784.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320177515|gb|EFW52509.1| Exodeoxyribonuclease X [Shigella dysenteriae CDC 74-1112]
 gi|320183242|gb|EFW58099.1| Exodeoxyribonuclease X [Shigella flexneri CDC 796-83]
 gi|332096685|gb|EGJ01676.1| exonuclease family protein [Shigella boydii 3594-74]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1516

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 27/138 (19%)

Query: 3   TLFIDFETR----SPIDLTKCGICKYAEDVCV-----------ILFAFGFDDHPVE---- 43
            +  D ET     S   + + G  K  E+  +           +   F  +         
Sbjct: 492 YVVFDIETTGFSSSRNRIIEIGAVK-VENGTIADKFSTFVNPDVPIPFEIEKLTGINDNM 550

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICTLVLAR 101
           +        +     E   N+   +VAHN+ F+ + +      L++      I T+ LAR
Sbjct: 551 VLPYPKINEILPRFLEFCGNS--VLVAHNAAFDVSFIAYNAARLNLAFEPTVIDTVALAR 608

Query: 102 SNGLP---SALKAVGEAL 116
                     L  V +AL
Sbjct: 609 LLLPNLNRYKLDTVAKAL 626


>gi|260557363|ref|ZP_05829578.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606]
 gi|260408989|gb|EEX02292.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606]
          Length = 459

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 28/181 (15%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDD-HPV 42
             L +D ET        D              LT   I  Y      +  +         
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVQVHGITDE 291

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP----IHRWICTL 97
            L D      +   L E L      I+AHN+ F+   L      + +P    +     TL
Sbjct: 292 FLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTDTL 349

Query: 98  VLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            LA++       +L A+    ++ ++       L+      + +  +         +A  
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409

Query: 156 L 156
            
Sbjct: 410 Q 410


>gi|169796679|ref|YP_001714472.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter baumannii AYE]
 gi|184157414|ref|YP_001845753.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU]
 gi|213156097|ref|YP_002318517.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
           AB0057]
 gi|215484167|ref|YP_002326392.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           AB307-0294]
 gi|301344775|ref|ZP_07225516.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB056]
 gi|301510946|ref|ZP_07236183.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB058]
 gi|169149606|emb|CAM87496.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter baumannii AYE]
 gi|183209008|gb|ACC56406.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
 gi|213055257|gb|ACJ40159.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
           AB0057]
 gi|213985858|gb|ACJ56157.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           AB307-0294]
 gi|322507294|gb|ADX02748.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           1656-2]
 gi|323517313|gb|ADX91694.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 459

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 28/181 (15%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDD-HPV 42
             L +D ET        D              LT   I  Y      +  +         
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVQVHGITDE 291

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP----IHRWICTL 97
            L D      +   L E L      I+AHN+ F+   L      + +P    +     TL
Sbjct: 292 FLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTDTL 349

Query: 98  VLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            LA++       +L A+    ++ ++       L+      + +  +         +A  
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409

Query: 156 L 156
            
Sbjct: 410 Q 410


>gi|161504783|ref|YP_001571895.1| DNA polymerase II [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866130|gb|ABX22753.1| hypothetical protein SARI_02907 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 783

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRIVYMLGPANGDARQLDFELVYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR-------------------- 92
                 + DV  +  N   F+  +L+     + + + + R                    
Sbjct: 210 AWFTEHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQ 268

Query: 93  -----WIC--TLVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                 I     + +        +L+AV + L      + EGK +   + + +  +  + 
Sbjct: 269 AKGRVIIDGIDALKSAFWNFSSFSLEAVSQEL------LGEGKSINNPWDRMDEIDRRFA 322

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           ++KP           Y   D  +  +IF + E +         L +     G  VD 
Sbjct: 323 QDKP-------ALATYNLKDCELVTQIFHKTEIMPF-------LLERATINGLPVDR 365


>gi|108805769|ref|YP_645706.1| hypothetical protein Rxyl_2984 [Rubrobacter xylanophilus DSM 9941]
 gi|108767012|gb|ABG05894.1| DNA polymerase III, epsilon subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 560

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 16/128 (12%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH----------PVELWDCV 48
            +  D ET         +T+ G  K      V  F+   +                 + V
Sbjct: 33  YVVFDLETTGSSAREGGITELGALKLVRGRVVDRFSTLVNPGRPIEPFVARLTGITDEMV 92

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP 106
                 + +    E       +VAHN+ F+ + L A        +  + TL LAR     
Sbjct: 93  SGAPPAREVIPRFEEFAEGSVLVAHNAGFDCSFLAAARGGRGLPNPVLDTLRLARLLVPG 152

Query: 107 SALKAVGE 114
                +  
Sbjct: 153 LRRYRLSA 160


>gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1]
 gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus
           radiodurans R1]
          Length = 197

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 39/148 (26%), Gaps = 30/148 (20%)

Query: 2   ATLFIDFETRS----PIDLTKCGICKYAE-------DVCVI---------LFAFGFDDHP 41
             +  D ET         + + G  +              +         L +  +    
Sbjct: 22  DVVVFDLETTGFSPASAAIVEIGAVRIVGGQIDETLKFETLVRPTRPDGSLLSIPWQAQR 81

Query: 42  VELWD--CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWI 94
           V       V      + +     +      +VAHN  F+   +        L     R +
Sbjct: 82  VHGISDEMVRRAPAIKDVLPDFFDFVDGSAVVAHNVSFDGGFMRAGAERLGLSWAPEREL 141

Query: 95  CTLVLARSNGL---PSALKAVGEALKLS 119
           CT+ L+R          L  + E L L 
Sbjct: 142 CTMQLSRRAFPRERTHNLTVLAERLGLE 169


>gi|194336729|ref|YP_002018523.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309206|gb|ACF43906.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 190

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 37/131 (28%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDH-------------PVELWD-- 46
            LF D ET       +  +        ++  A+  FD                  +    
Sbjct: 2   YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAIIKPEGFVIPSS 61

Query: 47  ------------CVHDP---VMPQVLKEALENTDVTIVAHNSYFERTV----LKAC-FNL 86
                        +       + Q   E + + +V  VAHN  F+  +    L       
Sbjct: 62  AVQIHGISTQRALLEGKPLGQVLQSFYELVADAEVL-VAHNISFDEKIVGSELIRAGMPN 120

Query: 87  DIPIHRWICTL 97
            +P  R ICT+
Sbjct: 121 SLPSKRKICTM 131


>gi|332978349|gb|EGK15074.1| DNA polymerase III, epsilon subunit [Psychrobacter sp. 1501(2011)]
          Length = 577

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 32/192 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK--- 58
             L +D ET     L      +  E   + L    F    + ++      +  +V++   
Sbjct: 306 RQLIMDTETTGLDALKG---DRVIEVGIIELVNRKFTGEKLHVYINPERGMDDEVIRVHG 362

Query: 59  ---EALENTDVTI---------------VAHNSYFERTVLKACFN-LDI----PIHRWIC 95
                L +                    +AHN+ F+ + L   F+ + +           
Sbjct: 363 ITEAFLADKPKFKEVAKPLYEFMLGAELIAHNAPFDMSFLSMEFDRVGLSDFAEKVTVTD 422

Query: 96  TLVLA--RSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           +LV+A  +  G  + L A+   L +    +   G  L +             +      E
Sbjct: 423 SLVMAKQQYPGQKNTLDALVRRLNVGKMDRTFHGALLDSEILAEVYLAMTGGQVALAIDE 482

Query: 153 AWRLFGEYCKGD 164
             +  GE    D
Sbjct: 483 DTQSEGEGSHAD 494


>gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1446

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 53/187 (28%), Gaps = 33/187 (17%)

Query: 3   TLFIDFETRSPIDLTK----CGICKYAEDVCVILFAFGFDDH---PVELWDCVH------ 49
              +D ET     LT+     GI K  +   +  F+   +     P  + +  +      
Sbjct: 423 YCVLDLETTGFSPLTEKITEVGIMKLKDGKVIDQFSCFVNPEKPIPARVVEVTNITDYMV 482

Query: 50  -DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN 103
            D    + +   +        +VAHN+ F+   LK        +     ++ TL LA+  
Sbjct: 483 QDAETIEKVFPKMLEFIEGSVLVAHNAEFDIGFLKHNAKVLGYNFDFT-YLDTLSLAKEI 541

Query: 104 GL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   L  + + L +                +         +      E  +  G  
Sbjct: 542 FPDYKSYKLGRIAKNLGIKVDVAH----------RALDDVDTTVKVFNIMLEKLKEKGVQ 591

Query: 161 CKGDVTV 167
              DV  
Sbjct: 592 TLEDVDT 598


>gi|262212335|gb|ACY35784.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS +  S+    V +D +G+E R L           +   G            + A A++
Sbjct: 13  RSLLKPSDNHLQVGSDASGLELRCLGHYL-------SRYDGGKFAEEVVNGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|307127646|ref|YP_003879677.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           pneumoniae 670-6B]
 gi|306484708|gb|ADM91577.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae 670-6B]
          Length = 816

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|282895827|ref|ZP_06303910.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
 gi|281199215|gb|EFA74082.1| 3'-5' exonuclease [Raphidiopsis brookii D9]
          Length = 130

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD--DHPVELWDCVHDPVMPQVLKE 59
            TL++D E              Y     + + A+  D       ++D +  P +     +
Sbjct: 21  RTLWLDTE-------IANWNTPYPRLSLIQVLAYPSDLTGEFAYIFDVLDKPDLTAYFIQ 73

Query: 60  -ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
             + N+++  V HN+ F+          +      +CT
Sbjct: 74  HIMVNSNIQKVFHNADFDL----KYLGKN-QAQNVVCT 106


>gi|228986699|ref|ZP_04146829.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773030|gb|EEM21466.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 315

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 22/159 (13%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AF-----GFDDHPVELWDCVH-- 49
             + IDFET         + +    KY     V  F ++        D    L    +  
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYR 68

Query: 50  --DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-- 100
             D    + +            IVAHN+ F+   LK       L  P ++ I T+ LA  
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKK 128

Query: 101 RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
              +     L+ +   L +         + I      + 
Sbjct: 129 YMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167


>gi|325497053|gb|EGC94912.1| ribonuclease D [Escherichia fergusonii ECD227]
          Length = 375

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 48/201 (23%), Gaps = 42/201 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVL 57
           + +D E     T                   + L    FD   + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLTIRDWSP--L 66

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K  L +  +T   H    +  V    F         I T VLA   G P +        +
Sbjct: 67  KSVLRDPAITKFLHAGSEDLEVFLNKFGE--MPQPLIDTQVLAAFCGRPMSWGFASMVEE 124

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            S   +++ +       +  T                    EY   DV     I  +L  
Sbjct: 125 YSGVILDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMA 168

Query: 178 LSSKEQELWYLDQTINDRGYC 198
            +     L             
Sbjct: 169 ETEASGWLPAALDECRLMQMR 189


>gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1010

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 39/163 (23%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPV----------------ELWDCV--------HDP 51
           +   G+ KY++ +  I  A   ++  +                ++ +            P
Sbjct: 1   METTGLYKYSDKITEIG-AVKVENGEITEVFNELVNPEKMIPEKVVELTGITNEMVMDKP 59

Query: 52  VMPQVLKEALE-NTDVTIVAHNSYFERTVLKACF-NLDIPIHRWI-CTLVLARSNGLPS- 107
            + ++L + LE + D   V  N+ F+   +K    NL          TL +AR+      
Sbjct: 60  KIDEILPKFLEFSKDAYFVGQNTDFDIGFIKEACDNLSYQFEPVYLDTLPMARAVFPSMG 119

Query: 108 --ALKAVGE--------ALKLSSQKMEEGKELIARFCKGETHE 140
             +L  + +          + S   M   K  I  F K +   
Sbjct: 120 RFSLDKLAKKLAVGPFNHHRASDDAMTTAKVFIKLFEKIKDKN 162


>gi|323174733|gb|EFZ60349.1| exonuclease family protein [Escherichia coli LT-68]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|323166513|gb|EFZ52276.1| ribonuclease D [Shigella sonnei 53G]
          Length = 371

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 46/164 (28%), Gaps = 25/164 (15%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D          LK  L +  +T   H    +  V    F  ++P    I T
Sbjct: 43  FDGEHLALID-PLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDT 99

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            +LA   G P +        + S   +++ +       +  T                  
Sbjct: 100 QILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLT----------------ER 143

Query: 157 FGEYCKGDVT----VTREIFKRLEP--LSSKEQELWYLDQTIND 194
             EY   DV     +T ++    E         +   L Q    
Sbjct: 144 QCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQ 187


>gi|319653481|ref|ZP_08007580.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
 gi|317394680|gb|EFV75419.1| DNA polymerase III subunit epsilon [Bacillus sp. 2_A_57_CT2]
          Length = 202

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
            ++K     Y+    V          P E         +   +K+   + D    AHN+ 
Sbjct: 55  PISKSAKNNYSRAFRVHGI-------PYEAVSGKCFDDI--KIKKYFFHADSVF-AHNAS 104

Query: 75  FERTVLKACFNLDIPIHRWICTL 97
           F+R+ L   +  DI   +W CT+
Sbjct: 105 FDRSFLYRMYPEDINELKWYCTM 127


>gi|253773201|ref|YP_003036032.1| exodeoxyribonuclease X [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161904|ref|YP_003045012.1| exodeoxyribonuclease X [Escherichia coli B str. REL606]
 gi|297519020|ref|ZP_06937406.1| exodeoxyribonuclease X [Escherichia coli OP50]
 gi|242377565|emb|CAQ32320.1| exonuclease X [Escherichia coli BL21(DE3)]
 gi|253324245|gb|ACT28847.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973805|gb|ACT39476.1| exodeoxyribonuclease X [Escherichia coli B str. REL606]
 gi|253977999|gb|ACT43669.1| exodeoxyribonuclease X [Escherichia coli BL21(DE3)]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAIAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|154494239|ref|ZP_02033559.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC
           43184]
 gi|154086101|gb|EDN85146.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC
           43184]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 43/173 (24%), Gaps = 31/173 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            D ETR      K           + L     D         ++   +P+ L+E L N  
Sbjct: 50  FDTETR--PSFKKGQRY------KISLMQISTD--EACFLFRLNRIGIPEALEEFLANEK 99

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
           V  +  +   +   ++     DI    ++   +                   +    +++
Sbjct: 100 VLKIGLSLRDDFGAMRKRT--DIQPANFLD--LQNYV-----------GQFGIEDASLQK 144

Query: 126 GKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTREIFKRLEP 177
                              R              +Y   D     +I+ +L+ 
Sbjct: 145 I-----YAILFNKKISKGQRLSNWEADVLSDAQKKYAALDAWACLKIYNQLKQ 192


>gi|70916832|ref|XP_732646.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56503713|emb|CAH85281.1| hypothetical protein PC301478.00.0 [Plasmodium chabaudi chabaudi]
          Length = 179

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLK 58
           +    +D ET         G+  + E   + L     +++PV ++D  +  +  +   L+
Sbjct: 121 IKYCGLDMETT--------GLEVFGE--KIRLIQIAVENYPVIIYDMFNITNNNILDGLR 170

Query: 59  EALENTDV 66
           + L + ++
Sbjct: 171 KILNDENI 178


>gi|312218970|emb|CBX98915.1| similar to DNA polymerase gamma [Leptosphaeria maculans]
          Length = 1168

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 70/295 (23%), Gaps = 69/295 (23%)

Query: 361 SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
              ++S V A EG   V AD+   E   +A + G+                   ++    
Sbjct: 699 GSELKSMVRAPEGYCFVGADVDSQEL-WIASLIGDATFKLHGGNAVGFMTLEGTKAAGTD 757

Query: 421 PAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
               T       R   KV      Y  G K    +       L     L   N   +  +
Sbjct: 758 LHSRTAGILGISRNAAKVFNYGRIYGAGLKFAATLLRQFNPTLTDEQTLKTANDLYQNTK 817

Query: 477 DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGK 536
             +   + + E        + F+    E   +  R +          L  A  + ++   
Sbjct: 818 GKKTVRKQLHERPFWRGGTESFVFNKLEDFAEQERPRTP-------VLGAAITEALQRRY 870

Query: 537 AIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGK 596
                                +                                      
Sbjct: 871 LT---------------RGGFMTSR----------------------------------- 880

Query: 597 LTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETPDTDEFNAS 645
                +Q+   D   +L   M            + +TVHDEI     D D++ A+
Sbjct: 881 -INWAIQSSGVDYLHLLIVSMDFLTRRYNLDARLAITVHDEIRYLVADKDKYRAA 934


>gi|300938801|ref|ZP_07153512.1| exonuclease [Escherichia coli MS 21-1]
 gi|300456266|gb|EFK19759.1| exonuclease [Escherichia coli MS 21-1]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDIIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|271500522|ref|YP_003333547.1| ribonuclease D [Dickeya dadantii Ech586]
 gi|270344077|gb|ACZ76842.1| ribonuclease D [Dickeya dadantii Ech586]
          Length = 373

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 18/111 (16%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE 114
           +  +  L+N  VT   H    +  V    F        +I T +LA   G P +      
Sbjct: 64  EPFRALLQNPQVTKYLHAGSEDLEVFLNAFG--CLPSPFIDTQILAAFRGKPLSYGFAAL 121

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                   +++ +       +  +                    +Y   DV
Sbjct: 122 VADYRQIVLDKSESRTDWLARPLS----------------EKQCQYAAADV 156


>gi|220934132|ref|YP_002513031.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995442|gb|ACL72044.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 235

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 42/148 (28%), Gaps = 31/148 (20%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYAE-DVCVILFAFGFDDHPV 42
             + +D ET                       +T+     Y + D  +   A        
Sbjct: 7   RQVVLDTETTGLEPAQGHRIIEIGCVELVGRRITRRTFHHYLQPDREIDEGALAVHGISN 66

Query: 43  ELWDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKA-------CFNLDIPIHRWI 94
           E       P    V+ E LE      +V HN+ F+   L                    +
Sbjct: 67  EF--LADKPRFADVVDEFLEFIRGAELVIHNAPFDVGFLDHELKLLDAARGQVTDYSSIL 124

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSS 120
            TL LAR        +L A+ +  ++ +
Sbjct: 125 DTLDLARRMHPGQRNSLDALCKRYQIDN 152


>gi|148997118|ref|ZP_01824772.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP11-BS70]
 gi|147756818|gb|EDK63858.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP11-BS70]
          Length = 816

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPALSQS 288


>gi|42782681|ref|NP_979928.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 10987]
 gi|42738607|gb|AAS42536.1| DNA polymerase III, epsilon subunit, putative [Bacillus cereus ATCC
           10987]
          Length = 315

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 22/159 (13%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AF-----GFDDHPVELWDCVH-- 49
             + IDFET         + +    KY     V  F ++        D    L    +  
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYR 68

Query: 50  --DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-- 100
             D    + +            IVAHN+ F+   LK       L  P ++ I T+ LA  
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKK 128

Query: 101 RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
              +     L+ +   L +         + I      + 
Sbjct: 129 YMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167


>gi|169633080|ref|YP_001706816.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter baumannii SDF]
 gi|169151872|emb|CAP00707.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
           ,epsilon subunit, 3-5 exonucleolytic proofreading
           function] [Acinetobacter baumannii]
          Length = 459

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 28/181 (15%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDD-HPV 42
             L +D ET        D              LT   I  Y      +  +         
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVQVHGITDE 291

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP----IHRWICTL 97
            L D      +   L E L      I+AHN+ F+   L      + +P    +     TL
Sbjct: 292 FLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTDTL 349

Query: 98  VLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            LA++       +L A+    ++ ++       L+      + +  +         +A  
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409

Query: 156 L 156
            
Sbjct: 410 Q 410


>gi|289550764|ref|YP_003471668.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180296|gb|ADC87541.1| DinG family ATP-dependent helicase YoaA [Staphylococcus lugdunensis
           HKU09-01]
          Length = 893

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 51/174 (29%), Gaps = 30/174 (17%)

Query: 6   IDFETRS---PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-----DPVMPQV- 56
           +D ET       D        +     ++       +  VE+   +      +  M +  
Sbjct: 9   VDLETTGNQLDYDEIIQIGITFVRGQKIVGTYHSMINTDVEIPPFIQALTSIEEDMLKQA 68

Query: 57  --LKEALEN-----TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL---ARSN 103
               E  E+      D   VAHN  F+ T +K  F   ++     + I T+ L   A   
Sbjct: 69  PYFHEVAEDVYKQLKDSVFVAHNVSFDLTFIKKAFKRNHIHFQPKKVIDTVELFKIAFPT 128

Query: 104 GLPSALKAVGEALKL--------SSQKMEEGKELIARFCKGETHECLYDRNKPN 149
                L  + EA  +                K +I  F K ET      +    
Sbjct: 129 DKSYQLSELAEAHHIPLDNAHRADEDATTTAKLMIKAFQKFETLPLDTLKQLYY 182


>gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 695

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 45/150 (30%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDH---PVELWD--------CVHD 50
            +  D ET   +               ++  A     +      E+ D            
Sbjct: 496 YVVFDTETTGLMP----------SQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPS 545

Query: 51  PVMPQVLKEAL--ENTDVT--------------IVAHNSYFERTVLKACF---NLDIPIH 91
                 + +A+  E  D+               +VAHN+ F+   L+            +
Sbjct: 546 STEVHGITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEPLIGRRFD-N 604

Query: 92  RWICTLVLARSN---GLPSALKAVGEALKL 118
             + T++L+          +L A+   + +
Sbjct: 605 PILDTVLLSAVLFGQSDVHSLDALTHRIGI 634


>gi|295107656|emb|CBL05199.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 445

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 25/130 (19%)

Query: 2   ATLFIDFETRSP----IDLTKCGICKYAEDVCVILFA--------FGFDDHPVELWD--- 46
             +  D ET         + + G   + +   +  F+           +   +       
Sbjct: 7   KFIAFDVETTGLSEYADRIVEIGAICFEDRKPMRSFSTLVNPGVRISVEASRINHISNEM 66

Query: 47  ---CVHDPVMPQVLKEALENT---DVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTL 97
                 +    +   E L +    +  + AHN+ F+   LK              ++ TL
Sbjct: 67  LGNAPSENQAYEQFVEFLGDALAGNSILCAHNARFDMGFLKNTLERLGYS-GTINYVDTL 125

Query: 98  VLARSNGLPS 107
            L+R      
Sbjct: 126 SLSRRLISDL 135


>gi|148358915|ref|YP_001250122.1| DNA polymerase III subunit epsilon [Legionella pneumophila str.
           Corby]
 gi|296106963|ref|YP_003618663.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280688|gb|ABQ54776.1| DNA polymerase III, epsilon subunit [Legionella pneumophila str.
           Corby]
 gi|295648864|gb|ADG24711.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
           Alcoy]
          Length = 233

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 34/150 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL--- 57
           M  + +D ET     +      +  E  C+ L                    + +     
Sbjct: 1   MRQVILDTETTG---IGPEQGHRVIEIGCIELIDRKLTGKH-FHIYLNPQREVDEGAFRV 56

Query: 58  ----------KEALEN---------TDVTIVAHNSYFERTVLK---ACFNLD---IPIHR 92
                     K   ++             ++ HN+ F+   L         +       R
Sbjct: 57  HGISTEFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCR 116

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL+LAR        +L A+ +  ++  
Sbjct: 117 ILDTLILAREKHPGQRNSLDALCKRYEIDH 146


>gi|58584800|ref|YP_198373.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419116|gb|AAW71131.1| DNA polymerase III epsilon subunit [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 231

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 46/146 (31%), Gaps = 32/146 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------- 54
             + +D ET    D+      +  E  CV L         V       +  +P       
Sbjct: 6   REIVLDTETTGL-DIESG--HRIIEIGCVELIN-RIPTGKVFHKYLNPERDIPYHSFKIH 61

Query: 55  ---QVL---KEALEN---------TDVTIVAHNSYFERTVLKACFN----LDIPIHRWIC 95
              +     K    +         +   ++ HN+ F+   L           I   R + 
Sbjct: 62  GISEEFLEDKPLFSDVVFEFLDFISGDILIIHNAEFDIKFLNMELGKLNARLISSDRVLD 121

Query: 96  TLVLAR--SNGLPSALKAVGEALKLS 119
           TL LAR    G P++L A+ +   +S
Sbjct: 122 TLPLARKKFVGSPASLSALCKRFDIS 147


>gi|49484243|ref|YP_041467.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242372|emb|CAG41084.1| putative exonuclease [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 310

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL--ARSNGL 105
           P + Q +   L      I+AHN+ F+ +VLK     ++L +P   ++ ++ +  +     
Sbjct: 71  PDIYQEILYLL-KESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDSINIFRSFHAIS 129

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
              L+ +     +  +K+   K  +    K        +++  
Sbjct: 130 SFKLENLCSLYDIDKEKLHSAKFDVLALSKMLISLAKNNKHYS 172


>gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP- 106
            V+ +  KE   + D  +VAHN+ F+   +   +    ++   +  + TL LAR      
Sbjct: 63  DVVLKQFKEW--SGDNILVAHNASFDMGFINTAYEKVGIEKAKNAVVDTLELARFLYPHF 120

Query: 107 --SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               L  + +   +      +     E  A        +     +   H       GE
Sbjct: 121 KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEFHDSLNDYMGE 178


>gi|255713056|ref|XP_002552810.1| KLTH0D01980p [Lachancea thermotolerans]
 gi|238934190|emb|CAR22372.1| KLTH0D01980p [Lachancea thermotolerans]
          Length = 1223

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 81/301 (26%), Gaps = 71/301 (23%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           I   +++ V A  G   V AD+   E   +A +  +        T         ++S   
Sbjct: 649 IGSELKAQVQAPPGYVFVGADVDSEEL-WIASLVSDSVFNIHGGTPIGWMCLEGSKSEGT 707

Query: 420 APA----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
                  Q+    R   K+      Y  G K   ++       L  +             
Sbjct: 708 DMHTKTAQILGCSRNEAKIFNYGRIYGAGVKFATQLLKNFNPGLTDYEA----------- 756

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENG 535
                     +E   +       +    +  KK W      +  L+N+L    EQ     
Sbjct: 757 ----------KETAEKLYSSTKGLVKRSKTFKKFWYSGSESI--LFNKLEHIAEQAA--- 801

Query: 536 KAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGG 595
                      P++      + +   L S                           T+  
Sbjct: 802 --------PRTPVLGAGITSSLMKGNLGS--------------------------NTFLP 827

Query: 596 KLTENIVQAVSRD---ILAEGMMNATKA---GYDIVLTVHDEIVCETPDTDEFNASMLYH 649
                 +Q+   D   +L   M    K       + L++HDEI   T + D++  +M   
Sbjct: 828 SRINWAIQSSGVDYLHLLCCSMNYLIKKFSLRARLALSIHDEIRFLTAEKDKYKTAMALQ 887

Query: 650 L 650
           +
Sbjct: 888 I 888


>gi|218548642|ref|YP_002382433.1| ribonuclease D [Escherichia fergusonii ATCC 35469]
 gi|218356183|emb|CAQ88800.1| ribonuclease D [Escherichia fergusonii ATCC 35469]
 gi|324113537|gb|EGC07512.1| ribonuclease D [Escherichia fergusonii B253]
          Length = 375

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 48/201 (23%), Gaps = 42/201 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVL 57
           + +D E     T                   + L    FD   + L D        P  L
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEHLALIDPLTIRDWSP--L 66

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K  L +  +T   H    +  V    F         I T VLA   G P +        +
Sbjct: 67  KSVLRDPAITKFLHAGSEDLEVFLNKFGE--MPQPLIDTQVLAAFCGRPMSWGFASMVEE 124

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            S   +++ +       +  T                    EY   DV     I  +L  
Sbjct: 125 YSGVILDKSESRTDWLARPLT----------------ERQCEYAAADVWYLLPITAKLMA 168

Query: 178 LSSKEQELWYLDQTINDRGYC 198
            +     L             
Sbjct: 169 ETEASGWLPAALDECRLMQMR 189


>gi|199597302|ref|ZP_03210733.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus rhamnosus HN001]
 gi|199591818|gb|EDY99893.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus rhamnosus HN001]
          Length = 180

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 23/141 (16%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAEDVCVILF--AFGFDDH----PVELWDC 47
           M  + +DFET          + L      +  +    +       FD           D 
Sbjct: 1   MDFIAMDFETANRKRASACSLALVVVQQNRVVDSFYTL-INPQMQFDPQNIRIHGITPDM 59

Query: 48  VHDPVMPQVLKEALE---NTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
           V D      +   ++        + AHN+ F+ +VL+     + +  P ++ I T+  +R
Sbjct: 60  VQDQPSFDRVWPHIQMFYTPGRIVTAHNAPFDVSVLRLTLDRYGIAAPRYQVIDTVKTSR 119

Query: 102 SN---GLPSALKAVGEALKLS 119
                     L  V  ALK+ 
Sbjct: 120 QFLPKLPNHRLDTVSAALKIP 140


>gi|161503057|ref|YP_001570169.1| ribonuclease D [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864404|gb|ABX21027.1| hypothetical protein SARI_01122 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 371

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGADVALID-PLGITDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 122 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 165

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 166 TEAAGWLPAALDECRLMQQR 185


>gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1536

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 21/141 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYA---EDVCV-----------ILFAFGFDDHPVELWDC 47
             +  D ET    +LT   I   A   E   V           +   F   +        
Sbjct: 501 NYVVFDIETTGLSNLTCKIIEIGAVRVEHGEVVSRFSEFINPEVPIPFKITELTSITDAM 560

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK-ACFNLDIPIH-RWICTLVLARSN 103
           V D  + + +         D  +VAHN+ F+   +K  C    +     ++ T+ +A+  
Sbjct: 561 VEDAPVIEEILPKFREFCGDAVLVAHNADFDTGFIKMECERQKLDWEFTYVDTVAMAQML 620

Query: 104 GLPSA---LKAVGEALKLSSQ 121
               +   L  V +A+ +  +
Sbjct: 621 LPGLSRFKLDTVAKAVGVPLE 641


>gi|283783847|ref|YP_003363712.1| DNA polymerase II [Citrobacter rodentium ICC168]
 gi|282947301|emb|CBG86846.1| DNA polymerase II [Citrobacter rodentium ICC168]
          Length = 783

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 67/237 (28%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVMPQVLK 58
             L +D ET    +L   G+        V +      D      +L      P + + L 
Sbjct: 151 RWLSLDIETTRHGELYCIGLEG-CGQRIVYMLGPANGDASGLDFQLEYVTSRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHNS-YFERTVLKACF-NLDIPIHRWICT------------------ 96
           E +   + DV  +  N   F+  +L+       IP+     +                  
Sbjct: 210 EWIARHDPDVI-IGWNLVQFDLRMLQKHAERYRIPLRFGRDSSELEWREHGFKNGVYFAQ 268

Query: 97  ----LVL--------ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
               L++        A  N    +L+AV + L      + EGK                D
Sbjct: 269 AKGRLIIDGIEALKSAFWNFSSFSLEAVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R      E       Y   D  +  +IF + E +         L +     G  VD 
Sbjct: 319 RRF---AEDKPALATYNLKDCELVTKIFHKTEIMPF-------LLERATVNGLPVDR 365


>gi|74311884|ref|YP_310303.1| ribonuclease D [Shigella sonnei Ss046]
 gi|73855361|gb|AAZ88068.1| RNase D [Shigella sonnei Ss046]
          Length = 375

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 46/164 (28%), Gaps = 25/164 (15%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           FD   + L D          LK  L +  +T   H    +  V    F  ++P    I T
Sbjct: 47  FDGEHLALID-PLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFG-ELP-QPLIDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            +LA   G P +        + S   +++ +       +  T                  
Sbjct: 104 QILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLT----------------ER 147

Query: 157 FGEYCKGDVT----VTREIFKRLEP--LSSKEQELWYLDQTIND 194
             EY   DV     +T ++    E         +   L Q    
Sbjct: 148 QCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQ 191


>gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K]
 gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 1446

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 70  AHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLS 119
            HN  F+   L A +   ++D+  +  I TL L+R          L ++ +  K++
Sbjct: 508 GHNVSFDMGFLNAGYERNDIDLIDNPVIDTLELSRMLHPEYKNHKLDSLTKRYKIN 563


>gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
 gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
          Length = 1437

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 33/143 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDCV---- 48
           ET    D+   G+     D  + L A       +                 + +      
Sbjct: 419 ETYVVFDVETTGLSA-VYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGITD 477

Query: 49  ----HDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVL 99
                 P +  V+++  E   D  +VAHN+ F+   L    K    +D   +  I TL L
Sbjct: 478 DMLQDAPDVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLEL 537

Query: 100 ARSNGL---PSALKAVGEALKLS 119
            R          L  + +   + 
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIE 560


>gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195]
          Length = 1437

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 33/143 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDCV---- 48
           ET    D+   G+     D  + L A       +                 + +      
Sbjct: 419 ETYVVFDVETTGLSA-VYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGITD 477

Query: 49  ----HDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVL 99
                 P +  V+++  E   D  +VAHN+ F+   L    K    +D   +  I TL L
Sbjct: 478 DMLQDAPDVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLLEVDKAKNPVIDTLEL 537

Query: 100 ARSNGL---PSALKAVGEALKLS 119
            R          L  + +   + 
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIE 560


>gi|229897495|ref|ZP_04512651.1| Ribonuclease D [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229693832|gb|EEO83881.1| Ribonuclease D [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 308

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 65/246 (26%), Gaps = 54/246 (21%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV- 56
            + +D E     T                   + L    +D   + L D +    + +  
Sbjct: 37  HIALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPL---PITEWQ 77

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AV 112
             +  L++ +V    H    +  V    F  D      I T VLA  +G   +      V
Sbjct: 78  PFRALLQDLNVVKYLHAGSEDLEVFLNAF--DQMPTPMIDTQVLAAFSGRSLSCGFAMLV 135

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E   +   K E   + IAR                          +Y   DV     + 
Sbjct: 136 AEFEGVELDKSESRTDWIARPLS-------------------EKQCDYAAADVFYLLPLA 176

Query: 173 KRLEPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +L   +      +            R   +D  LA+         R      L+ L   
Sbjct: 177 AKLVEATEAAGRMDAAKDECLLLCRRRSETLDPELAYREITNAWQLRGHQLACLQKLAEW 236

Query: 229 LVSSSR 234
            +  +R
Sbjct: 237 RLRQAR 242


>gi|227329796|ref|ZP_03833820.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 245

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHKIIEIG-AVEVINRRLTGRHFHVYIKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-----LKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPI 90
                  + D  +        + +   +      +V HN+ F+   +       N D+P 
Sbjct: 61  EAYNVHGISDEFLADKPTYADIVDDFLDFIRGAELVIHNATFDIGFMDYEFRLLNRDLPK 120

Query: 91  HRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                    +L++AR        +L A+ +  ++ + K      L+ 
Sbjct: 121 TETFCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLD 167


>gi|255037463|ref|YP_003088084.1| hypothetical protein Dfer_3714 [Dyadobacter fermentans DSM 18053]
 gi|254950219|gb|ACT94919.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053]
          Length = 244

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 48/197 (24%), Gaps = 52/197 (26%)

Query: 23  KYAEDVCVILFAFGF-----DDHPVELWDCVHDPV---MPQVLKEALEN---TDVTIVAH 71
            YAE   +I  AFG       D                +    K  +E      + + AH
Sbjct: 63  IYAEFGKIICIAFGAYYWNEKDEIAFKVSSFAGNDEALLLLQFKALVEKYPAEQLILCAH 122

Query: 72  NSY-FERTVLKACF---NLDIPIH-------RWI----CTLVL-------ARSNGLPSAL 109
           N   F+   +        ++IP          W      T+ L       + +     +L
Sbjct: 123 NGKEFDFPFICRRMLIHRIEIPKALQISGKKPWELLHQDTMDLWKFGDYKSYT-----SL 177

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
             +     +   K                                     YC+ DV V  
Sbjct: 178 DLLAAVFDIPGSK--------------NEMSGDQVTKVYYEENDLTKISRYCREDVVVLA 223

Query: 170 EIFKRLEPLSSKEQELW 186
           +++ RL       +   
Sbjct: 224 QLYLRLHCFDQIPEPNI 240


>gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
 gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
          Length = 1269

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 31/143 (21%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCV-----------ILFAF------GFDDHP 41
            +  D ET         + + G  K  E+  +           +   F        DD  
Sbjct: 456 YVVFDIETTGFSAVEDHIIEIGAVK-VENGKITDKYSTFVNPEVPIPFEITQLTSIDDS- 513

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRW-ICTLVL 99
             + D     V+     E + +  +  VAHN+ F+   ++  C NL+I      + T+ L
Sbjct: 514 -MVMDAPKIDVILPQFLEFVGDASL--VAHNAGFDVGFIEQNCKNLNIEQEFVSVDTVAL 570

Query: 100 ARSNGLPSA---LKAVGEALKLS 119
           AR      +   L  V +AL +S
Sbjct: 571 ARVLLPTLSKYKLNIVAKALNIS 593


>gi|194433962|ref|ZP_03066234.1| exodeoxyribonuclease X [Shigella dysenteriae 1012]
 gi|194417834|gb|EDX33931.1| exodeoxyribonuclease X [Shigella dysenteriae 1012]
 gi|320182620|gb|EFW57509.1| Exodeoxyribonuclease X [Shigella boydii ATCC 9905]
 gi|332095285|gb|EGJ00309.1| exonuclease family protein [Shigella dysenteriae 155-74]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|167392672|ref|XP_001740248.1| exosome complex exonuclease RRP6 [Entamoeba dispar SAW760]
 gi|165895708|gb|EDR23337.1| exosome complex exonuclease RRP6, putative [Entamoeba dispar
           SAW760]
          Length = 517

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 42/158 (26%), Gaps = 22/158 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D+       Y     V L           + D +       +L +   N ++  V H  
Sbjct: 211 VDVEHHSEHSYY--GFVCLLQISTRSSD-YIIDTITLRDSITLLNDPFTNPNIEKVFHGC 267

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
            F+   L   F   + +   I +   AR+             L+  S K    K      
Sbjct: 268 DFDMIWLSYNFG--LYVVNCIDSGQCARAL-----------KLQHFSLKYLLQKYCNVDA 314

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            K         R         +   EY +GD      I
Sbjct: 315 DKKYQLADWRLRPLT------KEMIEYARGDTHYLLYI 346


>gi|145299712|ref|YP_001142553.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852484|gb|ABO90805.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 244

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 43/167 (25%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFG---------------------FDDH 40
             + +D ET     +   G   Y     +I                           D  
Sbjct: 8   RQIILDTETTG---MNTAGGPIYLGH-RIIEIGCVEVINRKLTGNHYHVYIKPDRLVDPE 63

Query: 41  --------PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIP-- 89
                    V L D      +     + +      ++AHN+ F+ + +   F  L +   
Sbjct: 64  AIQVHGITDVFLADKPSFSQIANDFIDFIR--GAELIAHNAPFDVSFMDYEFGKLGLNFK 121

Query: 90  ---IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              I     TL +AR         L  + +   + +        L+ 
Sbjct: 122 TRDICSITDTLAIARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLD 168


>gi|126641104|ref|YP_001084088.1| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
          Length = 459

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 28/181 (15%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDD-HPV 42
             L +D ET        D              LT   I  Y      +  +         
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVQVHGITDE 291

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP----IHRWICTL 97
            L D      +   L E L      I+AHN+ F+   L      + +P    +     TL
Sbjct: 292 FLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTDTL 349

Query: 98  VLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            LA++       +L A+    ++ ++       L+      + +  +         +A  
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409

Query: 156 L 156
            
Sbjct: 410 Q 410


>gi|26108511|gb|AAN80713.1|AE016761_288 Exodeoxyribonuclease X [Escherichia coli CFT073]
          Length = 238

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 23  IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 78

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 79  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 132

Query: 112 VGEA 115
           +   
Sbjct: 133 MALY 136


>gi|16129797|ref|NP_416358.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655]
 gi|74311833|ref|YP_310252.1| exodeoxyribonuclease X [Shigella sonnei Ss046]
 gi|82776429|ref|YP_402778.1| exodeoxyribonuclease X [Shigella dysenteriae Sd197]
 gi|89108684|ref|AP_002464.1| DNA exonuclease X [Escherichia coli str. K-12 substr. W3110]
 gi|91211067|ref|YP_541053.1| exodeoxyribonuclease X [Escherichia coli UTI89]
 gi|110641962|ref|YP_669692.1| exodeoxyribonuclease X [Escherichia coli 536]
 gi|117623997|ref|YP_852910.1| exodeoxyribonuclease X [Escherichia coli APEC O1]
 gi|157159299|ref|YP_001463146.1| exodeoxyribonuclease X [Escherichia coli E24377A]
 gi|161486210|ref|NP_754148.2| exodeoxyribonuclease X [Escherichia coli CFT073]
 gi|170081500|ref|YP_001730820.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B]
 gi|170681411|ref|YP_001743401.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5]
 gi|188495324|ref|ZP_03002594.1| exodeoxyribonuclease X [Escherichia coli 53638]
 gi|191168492|ref|ZP_03030279.1| exodeoxyribonuclease X [Escherichia coli B7A]
 gi|191172968|ref|ZP_03034502.1| exodeoxyribonuclease X [Escherichia coli F11]
 gi|193066046|ref|ZP_03047103.1| exodeoxyribonuclease X [Escherichia coli E22]
 gi|194429668|ref|ZP_03062186.1| exodeoxyribonuclease X [Escherichia coli B171]
 gi|194439062|ref|ZP_03071145.1| exodeoxyribonuclease X [Escherichia coli 101-1]
 gi|209919210|ref|YP_002293294.1| exodeoxyribonuclease X [Escherichia coli SE11]
 gi|218554418|ref|YP_002387331.1| exodeoxyribonuclease X [Escherichia coli IAI1]
 gi|218558708|ref|YP_002391621.1| exodeoxyribonuclease X [Escherichia coli S88]
 gi|218689782|ref|YP_002397994.1| exodeoxyribonuclease X [Escherichia coli ED1a]
 gi|218695410|ref|YP_002403077.1| exodeoxyribonuclease X [Escherichia coli 55989]
 gi|218699585|ref|YP_002407214.1| exodeoxyribonuclease X [Escherichia coli IAI39]
 gi|218705343|ref|YP_002412862.1| exodeoxyribonuclease X [Escherichia coli UMN026]
 gi|227885729|ref|ZP_04003534.1| exodeoxyribonuclease X [Escherichia coli 83972]
 gi|237705796|ref|ZP_04536277.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA]
 gi|238901059|ref|YP_002926855.1| DNA exonuclease X [Escherichia coli BW2952]
 gi|256017967|ref|ZP_05431832.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|256022492|ref|ZP_05436357.1| exodeoxyribonuclease X [Escherichia sp. 4_1_40B]
 gi|260844189|ref|YP_003221967.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009]
 gi|260855770|ref|YP_003229661.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368]
 gi|260868365|ref|YP_003234767.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128]
 gi|291283026|ref|YP_003499844.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615]
 gi|293405339|ref|ZP_06649331.1| exodeoxyribonuclease X [Escherichia coli FVEC1412]
 gi|293410154|ref|ZP_06653730.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415159|ref|ZP_06657802.1| exodeoxyribonuclease X [Escherichia coli B185]
 gi|293446216|ref|ZP_06662638.1| exodeoxyribonuclease X [Escherichia coli B088]
 gi|298380980|ref|ZP_06990579.1| exodeoxyribonuclease X [Escherichia coli FVEC1302]
 gi|300816266|ref|ZP_07096488.1| exonuclease [Escherichia coli MS 107-1]
 gi|300824216|ref|ZP_07104334.1| exonuclease [Escherichia coli MS 119-7]
 gi|300899088|ref|ZP_07117373.1| exonuclease [Escherichia coli MS 198-1]
 gi|300917583|ref|ZP_07134236.1| exonuclease [Escherichia coli MS 115-1]
 gi|300924914|ref|ZP_07140845.1| exonuclease [Escherichia coli MS 182-1]
 gi|300928872|ref|ZP_07144378.1| exonuclease [Escherichia coli MS 187-1]
 gi|300951460|ref|ZP_07165297.1| exonuclease [Escherichia coli MS 116-1]
 gi|300956649|ref|ZP_07168925.1| exonuclease [Escherichia coli MS 175-1]
 gi|300982052|ref|ZP_07175871.1| exonuclease [Escherichia coli MS 200-1]
 gi|300994204|ref|ZP_07180761.1| exonuclease [Escherichia coli MS 45-1]
 gi|301025418|ref|ZP_07188970.1| exonuclease [Escherichia coli MS 196-1]
 gi|301050807|ref|ZP_07197661.1| exonuclease [Escherichia coli MS 185-1]
 gi|301327607|ref|ZP_07220824.1| exonuclease [Escherichia coli MS 78-1]
 gi|306814328|ref|ZP_07448494.1| exodeoxyribonuclease X [Escherichia coli NC101]
 gi|307138504|ref|ZP_07497860.1| exodeoxyribonuclease X [Escherichia coli H736]
 gi|307314078|ref|ZP_07593690.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|309789238|ref|ZP_07683831.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|309794224|ref|ZP_07688648.1| exonuclease [Escherichia coli MS 145-7]
 gi|312969882|ref|ZP_07784065.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|331642455|ref|ZP_08343590.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H736]
 gi|331653250|ref|ZP_08354255.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M718]
 gi|331668536|ref|ZP_08369384.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA271]
 gi|331673376|ref|ZP_08374144.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA280]
 gi|331677723|ref|ZP_08378398.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H591]
 gi|331683348|ref|ZP_08383949.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H299]
 gi|332279002|ref|ZP_08391415.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|84027958|sp|P0AEK1|EXOX_ECOL6 RecName: Full=Exodeoxyribonuclease 10; AltName:
           Full=Exodeoxyribonuclease X; Short=Exo X;
           Short=Exonuclease X
 gi|84027959|sp|P0AEK0|EXOX_ECOLI RecName: Full=Exodeoxyribonuclease 10; AltName:
           Full=Exodeoxyribonuclease X; Short=Exo X;
           Short=Exonuclease X
 gi|6166471|gb|AAF04847.1|AF194116_1 exonuclease X [Escherichia coli]
 gi|1788149|gb|AAC74914.1| DNA exonuclease X [Escherichia coli str. K-12 substr. MG1655]
 gi|73855310|gb|AAZ88017.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81240577|gb|ABB61287.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85675148|dbj|BAE76547.1| DNA exonuclease X [Escherichia coli str. K12 substr. W3110]
 gi|91072641|gb|ABE07522.1| exodeoxyribonuclease X [Escherichia coli UTI89]
 gi|110343554|gb|ABG69791.1| exodeoxyribonuclease X [Escherichia coli 536]
 gi|115513121|gb|ABJ01196.1| exodeoxyribonuclease X [Escherichia coli APEC O1]
 gi|157081329|gb|ABV21037.1| exodeoxyribonuclease X [Escherichia coli E24377A]
 gi|169889335|gb|ACB03042.1| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B]
 gi|170519129|gb|ACB17307.1| exodeoxyribonuclease X [Escherichia coli SMS-3-5]
 gi|188490523|gb|EDU65626.1| exodeoxyribonuclease X [Escherichia coli 53638]
 gi|190901445|gb|EDV61207.1| exodeoxyribonuclease X [Escherichia coli B7A]
 gi|190906679|gb|EDV66284.1| exodeoxyribonuclease X [Escherichia coli F11]
 gi|192926283|gb|EDV80920.1| exodeoxyribonuclease X [Escherichia coli E22]
 gi|194412310|gb|EDX28614.1| exodeoxyribonuclease X [Escherichia coli B171]
 gi|194422021|gb|EDX38025.1| exodeoxyribonuclease X [Escherichia coli 101-1]
 gi|209767638|gb|ACI82131.1| exonuclease X [Escherichia coli]
 gi|209767644|gb|ACI82134.1| exonuclease X [Escherichia coli]
 gi|209912469|dbj|BAG77543.1| DNA exonuclease X [Escherichia coli SE11]
 gi|218352142|emb|CAU97881.1| DNA exonuclease X [Escherichia coli 55989]
 gi|218361186|emb|CAQ98770.1| DNA exonuclease X [Escherichia coli IAI1]
 gi|218365477|emb|CAR03204.1| DNA exonuclease X [Escherichia coli S88]
 gi|218369571|emb|CAR17340.1| DNA exonuclease X [Escherichia coli IAI39]
 gi|218427346|emb|CAR08241.2| DNA exonuclease X [Escherichia coli ED1a]
 gi|218432440|emb|CAR13333.1| DNA exonuclease X [Escherichia coli UMN026]
 gi|222033593|emb|CAP76334.1| exodeoxyribonuclease 10 [Escherichia coli LF82]
 gi|226900553|gb|EEH86812.1| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA]
 gi|227837302|gb|EEJ47768.1| exodeoxyribonuclease X [Escherichia coli 83972]
 gi|238860815|gb|ACR62813.1| DNA exonuclease X [Escherichia coli BW2952]
 gi|257754419|dbj|BAI25921.1| DNA exonuclease X [Escherichia coli O26:H11 str. 11368]
 gi|257759336|dbj|BAI30833.1| DNA exonuclease X [Escherichia coli O103:H2 str. 12009]
 gi|257764721|dbj|BAI36216.1| DNA exonuclease X [Escherichia coli O111:H- str. 11128]
 gi|260449035|gb|ACX39457.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1]
 gi|281178912|dbj|BAI55242.1| DNA exonuclease X [Escherichia coli SE15]
 gi|284921762|emb|CBG34835.1| exodeoxyribonuclease X [Escherichia coli 042]
 gi|290762899|gb|ADD56860.1| Exodeoxyribonuclease 10 [Escherichia coli O55:H7 str. CB9615]
 gi|291323046|gb|EFE62474.1| exodeoxyribonuclease X [Escherichia coli B088]
 gi|291427547|gb|EFF00574.1| exodeoxyribonuclease X [Escherichia coli FVEC1412]
 gi|291432807|gb|EFF05786.1| exodeoxyribonuclease X [Escherichia coli B185]
 gi|291470622|gb|EFF13106.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294490108|gb|ADE88864.1| exodeoxyribonuclease X [Escherichia coli IHE3034]
 gi|298278422|gb|EFI19936.1| exodeoxyribonuclease X [Escherichia coli FVEC1302]
 gi|299880094|gb|EFI88305.1| exonuclease [Escherichia coli MS 196-1]
 gi|300297496|gb|EFJ53881.1| exonuclease [Escherichia coli MS 185-1]
 gi|300307354|gb|EFJ61874.1| exonuclease [Escherichia coli MS 200-1]
 gi|300316527|gb|EFJ66311.1| exonuclease [Escherichia coli MS 175-1]
 gi|300357297|gb|EFJ73167.1| exonuclease [Escherichia coli MS 198-1]
 gi|300406332|gb|EFJ89870.1| exonuclease [Escherichia coli MS 45-1]
 gi|300415183|gb|EFJ98493.1| exonuclease [Escherichia coli MS 115-1]
 gi|300418932|gb|EFK02243.1| exonuclease [Escherichia coli MS 182-1]
 gi|300449289|gb|EFK12909.1| exonuclease [Escherichia coli MS 116-1]
 gi|300463162|gb|EFK26655.1| exonuclease [Escherichia coli MS 187-1]
 gi|300523287|gb|EFK44356.1| exonuclease [Escherichia coli MS 119-7]
 gi|300530956|gb|EFK52018.1| exonuclease [Escherichia coli MS 107-1]
 gi|300845856|gb|EFK73616.1| exonuclease [Escherichia coli MS 78-1]
 gi|305852487|gb|EFM52938.1| exodeoxyribonuclease X [Escherichia coli NC101]
 gi|306906216|gb|EFN36733.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
 gi|307553862|gb|ADN46637.1| exodeoxyribonuclease X [Escherichia coli ABU 83972]
 gi|307626675|gb|ADN70979.1| exodeoxyribonuclease X [Escherichia coli UM146]
 gi|308122129|gb|EFO59391.1| exonuclease [Escherichia coli MS 145-7]
 gi|308922992|gb|EFP68506.1| exonuclease family protein [Shigella dysenteriae 1617]
 gi|310338167|gb|EFQ03256.1| exonuclease family protein [Escherichia coli 1827-70]
 gi|312946443|gb|ADR27270.1| exodeoxyribonuclease X [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061147|gb|ADT75474.1| DNA exonuclease X [Escherichia coli W]
 gi|315136487|dbj|BAJ43646.1| exodeoxyribonuclease 10 [Escherichia coli DH1]
 gi|315286537|gb|EFU45972.1| exonuclease [Escherichia coli MS 110-3]
 gi|315290373|gb|EFU49749.1| exonuclease [Escherichia coli MS 153-1]
 gi|320194441|gb|EFW69072.1| Exodeoxyribonuclease X [Escherichia coli WV_060327]
 gi|320198024|gb|EFW72632.1| Exodeoxyribonuclease X [Escherichia coli EC4100B]
 gi|320641696|gb|EFX11084.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. G5101]
 gi|320647056|gb|EFX15889.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. 493-89]
 gi|320652339|gb|EFX20637.1| exodeoxyribonuclease X [Escherichia coli O157:H- str. H 2687]
 gi|320657940|gb|EFX25702.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658513|gb|EFX26207.1| exodeoxyribonuclease X [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668411|gb|EFX35238.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. LSU-61]
 gi|323152600|gb|EFZ38877.1| exonuclease family protein [Escherichia coli EPECa14]
 gi|323158672|gb|EFZ44686.1| exonuclease family protein [Escherichia coli E128010]
 gi|323166600|gb|EFZ52360.1| exonuclease family protein [Shigella sonnei 53G]
 gi|323180624|gb|EFZ66169.1| exonuclease family protein [Escherichia coli 1180]
 gi|323186407|gb|EFZ71755.1| exonuclease family protein [Escherichia coli 1357]
 gi|323378276|gb|ADX50544.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli KO11]
 gi|323940489|gb|EGB36680.1| exonuclease [Escherichia coli E482]
 gi|323948271|gb|EGB44259.1| exonuclease [Escherichia coli H120]
 gi|323952346|gb|EGB48219.1| exonuclease [Escherichia coli H252]
 gi|323956475|gb|EGB52217.1| exonuclease [Escherichia coli H263]
 gi|323968612|gb|EGB64018.1| exonuclease [Escherichia coli M863]
 gi|323972649|gb|EGB67852.1| exonuclease [Escherichia coli TA007]
 gi|323977972|gb|EGB73058.1| exonuclease [Escherichia coli TW10509]
 gi|324007199|gb|EGB76418.1| exonuclease [Escherichia coli MS 57-2]
 gi|324012816|gb|EGB82035.1| exonuclease [Escherichia coli MS 60-1]
 gi|324018034|gb|EGB87253.1| exonuclease [Escherichia coli MS 117-3]
 gi|324118904|gb|EGC12793.1| exonuclease [Escherichia coli E1167]
 gi|327252967|gb|EGE64621.1| exonuclease family protein [Escherichia coli STEC_7v]
 gi|331039253|gb|EGI11473.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H736]
 gi|331049348|gb|EGI21420.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M718]
 gi|331063730|gb|EGI35641.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA271]
 gi|331069574|gb|EGI40961.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA280]
 gi|331074183|gb|EGI45503.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H591]
 gi|331079563|gb|EGI50760.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli H299]
 gi|332101354|gb|EGJ04700.1| exodeoxyribonuclease X [Shigella sp. D9]
 gi|332343569|gb|AEE56903.1| exonuclease [Escherichia coli UMNK88]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|325963026|ref|YP_004240932.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469113|gb|ADX72798.1| ribonuclease D [Arthrobacter phenanthrenivorans Sphe3]
          Length = 444

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 39/137 (28%), Gaps = 25/137 (18%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L     +     L D      +  ++ EAL    V  + H +  +   L     L +   
Sbjct: 86  LVQIRREGAGTWLIDPEPFENL-DIINEALR--GVEWILHAASQDLPCLSE---LGMWPD 139

Query: 92  RWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
           +   T + AR  GLP   L AV E L                           D +    
Sbjct: 140 KLFDTELAARLAGLPRVGLAAVIEQL---------------LGFGLAKEHSAADWSTRPL 184

Query: 151 REAWRLFGEYCKGDVTV 167
            E W     Y   DV V
Sbjct: 185 PEPW---LRYAALDVEV 198


>gi|322494963|emb|CBZ30266.1| hypothetical protein, unknown function [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 547

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/193 (10%), Positives = 54/193 (27%), Gaps = 34/193 (17%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
           V         ++P  +KEAL +  +         + + L+   N+ I     +     + 
Sbjct: 40  VLHISFFDGRILPAAVKEALCDPSIIKCGVGVSGDVSRLQKEQNITIQ--SVLDIAHYSA 97

Query: 102 SNGLPS----ALKAVGEA---LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
             GL       LK + ++   L +   KM                               
Sbjct: 98  LLGLHQGAQSNLKVLAKSVANLSIEKDKMITRSNWELPLSDSR----------------- 140

Query: 155 RLFGEYCKGDVTVTR----EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y   D   +      + ++   +++   + + + Q +        +     L + 
Sbjct: 141 ---VNYAAEDALASYLVGRAVMQKASEVTNMSADAFDVAQWLQRTSSKAAME-LKKLQRE 196

Query: 211 VDVERTKLDQELE 223
           +    ++ +++  
Sbjct: 197 MLKSDSEKEKKAC 209


>gi|270263929|ref|ZP_06192197.1| DNA polymerase II [Serratia odorifera 4Rx13]
 gi|270042122|gb|EFA15218.1| DNA polymerase II [Serratia odorifera 4Rx13]
          Length = 787

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 54/206 (26%), Gaps = 40/206 (19%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVMPQVLK 58
             + +D ET +  +L    +        V +       +     EL  C   P M + L 
Sbjct: 153 KMVSLDIETTAHGELYSIALEG-CGQRQVYMLGPANGGNEPLDFELEYCTSRPQMLERLN 211

Query: 59  EALE--NTDVTIVAHNS-YFERTVLKAC---------FNLDIPIHRWICTLVLARSNGLP 106
           + LE  + D   +  N   F+  VL+                 +  W       R +G  
Sbjct: 212 QWLERHDPDAI-IGWNLVQFDLRVLQKHAERYQIPLRLGRGGNLLEW-------REHGFK 263

Query: 107 SALKAVGEALKLSSQKMEEGKEL--------IARFCKGETHECLYDRNKPNHREAWRL-- 156
                   A +L    +E  K          +    +    E     N            
Sbjct: 264 QNHFFASAAGRLIIDGIEALKSATWNFPSFSLEYVAQALLGEGKSIDNPYQRMAEIDRRF 323

Query: 157 ------FGEYCKGDVTVTREIFKRLE 176
                    Y   D  +  +IF + E
Sbjct: 324 AEDKPALARYNLKDCELVTQIFAKTE 349


>gi|261821503|ref|YP_003259609.1| ribonuclease D [Pectobacterium wasabiae WPP163]
 gi|261605516|gb|ACX88002.1| ribonuclease D [Pectobacterium wasabiae WPP163]
          Length = 374

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 41/169 (24%), Gaps = 42/169 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQV 56
            + +D E     T                   + L    +D   + L D        P  
Sbjct: 24  QVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPLTITDWAP-- 65

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  L +  VT   H    +  V    F        +I T +LA   G P +        
Sbjct: 66  FQALLRDEQVTKFLHAGSEDLEVFLNTFG--TLPTPFIDTQILAAFLGKPLSYGFAALVA 123

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                 +++ +       +  +                    +Y   DV
Sbjct: 124 DYMGVTLDKSESRTDWLARPLS----------------EKQCDYAAADV 156


>gi|326680088|ref|XP_001921130.2| PREDICTED: DNA polymerase subunit gamma-1-like [Danio rerio]
          Length = 1203

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 46/399 (11%), Positives = 94/399 (23%), Gaps = 46/399 (11%)

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDG-RLRGTLQFLGASRTGRWSGCVFPPQNL 329
                 +   R    R +   +  L  A      RL                     PQ +
Sbjct: 754  EINKMISFWRNAQKRISSQMVVWLRRAELPRSVRLHQDY-------DEEGQYGAILPQVI 806

Query: 330  PRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVL 389
            P  + +   ++      PT +T+       +   +++ V       LV AD+   E  + 
Sbjct: 807  PAGTVTRRAVE------PTWLTASNARKDRVGSELKAMVQVPPAYHLVGADVDSQELWIA 860

Query: 390  AWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKD----QRAIGKVMELALGYQGGA 445
            A +    +      T          +S        T D     R   KV      Y  G 
Sbjct: 861  AMLGEAHFAGMHGCTAFGWMTLQGKKSQGTDLHSRTADAVGISREHAKVFNYGRIYGAGQ 920

Query: 446  KAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACER 505
               +++       L+      K        +    +    +       +           
Sbjct: 921  PFAERLLMQFNHRLSQQEAAGKARQMYALTKGLRRYHLSEEGEWLLQKLNVNVERAEDGS 980

Query: 506  VKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSG 565
            +            +   ++ +   Q     K  +   R                +     
Sbjct: 981  IS----------LQDLRKISKVATQRGSKKKWNLTAGRVWTDGTESYMFNKLESIAQSD- 1029

Query: 566  RSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA---TK 619
                   +    S     +       T        +VQ+ + D   ++   M        
Sbjct: 1030 -RPATPVLNCRISRALEPSAVQEEFIT---SRVNWVVQSSAVDYLHLMLVSMRWLFEEHD 1085

Query: 620  AGYDIVLTVHDEIVCETPDTDEFNAS-------MLYHLM 651
                  +++HDE+       D + A+       +L   M
Sbjct: 1086 IDGRFCISIHDEVRYLVTSEDRYRAALALQITNLLTRCM 1124


>gi|157161311|ref|YP_001458629.1| exodeoxyribonuclease X [Escherichia coli HS]
 gi|157066991|gb|ABV06246.1| exodeoxyribonuclease X [Escherichia coli HS]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
 gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
          Length = 453

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 46/147 (31%), Gaps = 43/147 (29%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV--ELWDCVHDPVMPQVL----- 57
           ID ET            ++ E+  +   A + FD H V  +    V+     Q       
Sbjct: 5   IDIETTG---------GQFNEEG-ITEIAIYKFDGHEVVDQFISLVNPEKPIQPFVVKLT 54

Query: 58  -----------------KEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
                            K  +E      IVAHN+ F+  +LK        D       CT
Sbjct: 55  GINNAMLRSAPKFYEVAKRIIEITEGCVIVAHNASFDYRILKTEFRRLGYDFKKQTL-CT 113

Query: 97  LVLARSNG---LPSALKAVGEALKLSS 120
           + L++         +L  +  AL +  
Sbjct: 114 VELSKKLIPEQPSYSLGKLVRALGIPM 140


>gi|51596384|ref|YP_070575.1| ribonuclease D [Yersinia pseudotuberculosis IP 32953]
 gi|149365996|ref|ZP_01888031.1| ribonuclease D [Yersinia pestis CA88-4125]
 gi|153949850|ref|YP_001400986.1| ribonuclease D [Yersinia pseudotuberculosis IP 31758]
 gi|162421744|ref|YP_001606825.1| ribonuclease D [Yersinia pestis Angola]
 gi|165928352|ref|ZP_02224184.1| ribonuclease D [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938856|ref|ZP_02227410.1| ribonuclease D [Yersinia pestis biovar Orientalis str. IP275]
 gi|166009317|ref|ZP_02230215.1| ribonuclease D [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166210648|ref|ZP_02236683.1| ribonuclease D [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401505|ref|ZP_02307002.1| ribonuclease D [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420357|ref|ZP_02312110.1| ribonuclease D [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167424411|ref|ZP_02316164.1| ribonuclease D [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|170024358|ref|YP_001720863.1| ribonuclease D [Yersinia pseudotuberculosis YPIII]
 gi|218929182|ref|YP_002347057.1| ribonuclease D [Yersinia pestis CO92]
 gi|229894791|ref|ZP_04509971.1| ribonuclease D [Yersinia pestis Pestoides A]
 gi|229898140|ref|ZP_04513289.1| ribonuclease D [Yersinia pestis biovar Orientalis str. India 195]
 gi|229902002|ref|ZP_04517123.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|270490819|ref|ZP_06207893.1| ribonuclease D [Yersinia pestis KIM D27]
 gi|294503859|ref|YP_003567921.1| ribonuclease D [Yersinia pestis Z176003]
 gi|51589666|emb|CAH21296.1| ribonuclease D [Yersinia pseudotuberculosis IP 32953]
 gi|115347793|emb|CAL20710.1| ribonuclease D [Yersinia pestis CO92]
 gi|149292409|gb|EDM42483.1| ribonuclease D [Yersinia pestis CA88-4125]
 gi|152961345|gb|ABS48806.1| ribonuclease D [Yersinia pseudotuberculosis IP 31758]
 gi|162354559|gb|ABX88507.1| ribonuclease D [Yersinia pestis Angola]
 gi|165913219|gb|EDR31842.1| ribonuclease D [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919635|gb|EDR36968.1| ribonuclease D [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991872|gb|EDR44173.1| ribonuclease D [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207828|gb|EDR52308.1| ribonuclease D [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962052|gb|EDR58073.1| ribonuclease D [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049201|gb|EDR60609.1| ribonuclease D [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056293|gb|EDR66062.1| ribonuclease D [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169750892|gb|ACA68410.1| ribonuclease D [Yersinia pseudotuberculosis YPIII]
 gi|229680898|gb|EEO76993.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|229688856|gb|EEO80923.1| ribonuclease D [Yersinia pestis biovar Orientalis str. India 195]
 gi|229702264|gb|EEO90283.1| ribonuclease D [Yersinia pestis Pestoides A]
 gi|262362022|gb|ACY58743.1| ribonuclease D [Yersinia pestis D106004]
 gi|262365841|gb|ACY62398.1| ribonuclease D [Yersinia pestis D182038]
 gi|270339323|gb|EFA50100.1| ribonuclease D [Yersinia pestis KIM D27]
 gi|294354318|gb|ADE64659.1| ribonuclease D [Yersinia pestis Z176003]
 gi|320015246|gb|ADV98817.1| ribonuclease D [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 373

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 65/246 (26%), Gaps = 54/246 (21%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV- 56
            + +D E     T                   + L    +D   + L D +    + +  
Sbjct: 24  HIALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPL---PITEWQ 64

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AV 112
             +  L++ +V    H    +  V    F  D      I T VLA  +G   +      V
Sbjct: 65  PFRALLQDLNVVKYLHAGSEDLEVFLNAF--DQMPTPMIDTQVLAAFSGRSLSCGFAMLV 122

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E   +   K E   + IAR                          +Y   DV     + 
Sbjct: 123 AEFEGVELDKSESRTDWIARPLS-------------------EKQCDYAAADVFYLLPLA 163

Query: 173 KRLEPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +L   +      +            R   +D  LA+         R      L+ L   
Sbjct: 164 AKLVEATEAAGRMDAAKDECLLLCRRRSETLDPELAYREITNAWQLRGHQLACLQKLAEW 223

Query: 229 LVSSSR 234
            +  +R
Sbjct: 224 RLRQAR 229


>gi|332852350|ref|ZP_08434135.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013150]
 gi|332870148|ref|ZP_08439060.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013113]
 gi|332875093|ref|ZP_08442929.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6014059]
 gi|332729293|gb|EGJ60634.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013150]
 gi|332732415|gb|EGJ63671.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6013113]
 gi|332736710|gb|EGJ67701.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
           6014059]
          Length = 497

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 28/181 (15%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDD-HPV 42
             L +D ET        D              LT   I  Y      +  +         
Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVQVHGITDE 329

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP----IHRWICTL 97
            L D      +   L E L      I+AHN+ F+   L      + +P    +     TL
Sbjct: 330 FLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTDTL 387

Query: 98  VLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            LA++       +L A+    ++ ++       L+      + +  +         +A  
Sbjct: 388 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 447

Query: 156 L 156
            
Sbjct: 448 Q 448


>gi|297307109|ref|NP_001137329.2| Werner syndrome [Bos taurus]
          Length = 1404

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 65/238 (27%), Gaps = 44/238 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             +  D E        K  + + A      L      +    L+        PQ LK  L
Sbjct: 75  DVVGFDIE---WPPFKKGTLSRVA------LIQLCVAESKCYLFHISSMSGFPQGLKMLL 125

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSS 120
           EN  +                   + I   +W       +        LK++ E   +++
Sbjct: 126 ENEAIKK---------------AGVGIEQDQW-------KLLRDFDINLKSIVELTDVAN 163

Query: 121 QKMEEGKE-----LIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
           +K++  +      L+      +  +    R     R         Y   D      I+++
Sbjct: 164 EKLKCIETWSLNGLVKYLFGKQLLKDRSIRCSDWSRFPLTEDQKVYAATDAYAGFIIYQK 223

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L  LS   Q   ++     +    +  +        +  E   L + L      L + 
Sbjct: 224 LANLSDPVQ--IFVKSKEEE----ILPSDVKKQLTSISKEMMDLAERLPDTFGKLENP 275


>gi|253988342|ref|YP_003039698.1| DNA polymerase III subunit epsilon [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus
           asymbiotica]
          Length = 248

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 43/156 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQVVLDTETTG---MNKLGVHY--EGHKIIEIG-AVEVVNRRLTGRHFHIYVKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-LKEALENTDVTIV------AHNSYFERTVLKACFN---LDIPI 90
                  + D  +    L   + +  +  +       HN+ F+   +   F     DIP 
Sbjct: 61  EAFEVHGISDEFLQDKPLFADIADEFIEFIRGAELIIHNAPFDIGFMDYEFGKLNRDIPP 120

Query: 91  H----RWICTLVLARSNGLPS--ALKAVGEALKLSS 120
                +   +L LAR+        L A+ +   + +
Sbjct: 121 TTDFCKVTDSLQLARALFPGKRNNLDALCDRYDIDN 156


>gi|206603443|gb|EDZ39923.1| DNA polymerase III, epsilon subunit [Leptospirillum sp. Group II
           '5-way CG']
          Length = 265

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 41/156 (26%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFG-FDDHP-----------VELWD-- 46
           M   F+D ET         G+ + +    +I   F  +++             V++    
Sbjct: 1   MKITFLDVETT--------GLLRDSR-ARIIELGFSTWENGKLLRKNSTLIKSVDVVPDN 51

Query: 47  -----------CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNL--DIPIHR 92
                          P    V K   E+     +VAHN  F+  ++     L   IP+  
Sbjct: 52  ISKINGITTEMLKDAPGFEDVWKSIKEDFQGSILVAHNLAFDVGMVNRELILANRIPLGN 111

Query: 93  W-ICTLVLARSNGLPSA---LKAVGEALKLSSQKME 124
             I TL L+R      +   L  + + + + ++   
Sbjct: 112 MGIDTLPLSRKMLPELSSYRLGEIAKHMGILNESPH 147


>gi|45384214|ref|NP_990618.1| lamin-A [Gallus gallus]
 gi|125961|sp|P13648|LMNA_CHICK RecName: Full=Lamin-A; Flags: Precursor
 gi|63556|emb|CAA34762.1| unnamed protein product [Gallus gallus]
          Length = 657

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 77/287 (26%), Gaps = 36/287 (12%)

Query: 99  LAR---SNGLPSALKAVGE---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            A           L +V +    L+L   K+ E  + +      +  + L  + +    E
Sbjct: 78  AAYEAELADARKTLDSVAKERARLQLELSKVREEHKELKARNAKKEADLLAAQARLKDLE 137

Query: 153 AWRLFGEYCKGDVTVTRE--------IFKRLEPLSSKEQELWYLDQTINDRGYCVDVA-L 203
           A     E         +         +  ++  L     E     Q   +    VD    
Sbjct: 138 ALLNSKEAALSTALGEKRNLENEVRDLRAQVAKLEGALSEAKKQLQD--EMLRRVDAENR 195

Query: 204 AHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
             TL + ++ ++    +EL        +    ++  +   F            +     L
Sbjct: 196 LQTLKEELEFQKNIYSEELRETKRRHETRLVEIDNGRQQEFE-----------SKLAEAL 244

Query: 264 SSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNSD----GRLRGTLQFLGASRTGRW 319
              ++      Q+ + R    ++   KL    ++   +    G     LQ          
Sbjct: 245 QDLRRQHE--DQIRHYRDELEKTYGAKLENAKQSAERNSSMAGAAHEELQQTHIRID-SL 301

Query: 320 SGCVFPPQ-NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVR 365
           S  +   Q  L        E+++ ++             +     +R
Sbjct: 302 SAELSQLQKQLAAKEAKLREVEEALSREREGGRRLLAEKEREMAEMR 348


>gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1437

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 33/143 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDCV---- 48
           ET    D+   G+     D  + L A       +                 + +      
Sbjct: 419 ETYVVFDVETTGLSA-VYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGITD 477

Query: 49  ----HDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVL 99
                 P +  V+++  E   D  +VAHN+ F+   L    K    ++   +  I TL L
Sbjct: 478 DMLRDAPDVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLEL 537

Query: 100 ARSNGL---PSALKAVGEALKLS 119
            R          L  + +   + 
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIE 560


>gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 697

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 29/142 (20%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCV-----------ILFAFGFDDHPVE---- 43
            +  D ET         + + G  K      +           +   +  ++        
Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVKVV-HGEITERFSTFVNPEVPIPYRIEELTSIRDDM 533

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA 100
           + D      +     E   +    +VAHN+ F+ + +        ++      I T+ LA
Sbjct: 534 VIDAPKIETILPQFMEFCGDA--IMVAHNADFDMSFIIKNCERQGIE-KEFTIIDTVALA 590

Query: 101 RSNGLPSA---LKAVGEALKLS 119
           R          L  V +AL +S
Sbjct: 591 RILLPQLNRFKLDTVAKALGVS 612


>gi|229061173|ref|ZP_04198523.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
 gi|228718044|gb|EEL69684.1| DNA polymerase III alpha subunit [Bacillus cereus AH603]
          Length = 318

 Score = 42.0 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 66/245 (26%), Gaps = 27/245 (11%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AF-----GFDDHPVELWDCVH-- 49
             + IDFET         + +    KY     V  F ++        D    L    +  
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYHNHELVDQFVSYVNPERSIPDRITSLTGITNYR 71

Query: 50  --DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-- 100
             D    + +            IVAHN+ F+   LK       L  P +  I T+ LA  
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFLAKK 131

Query: 101 RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
              +     L+ +   L +         + I      +    + +  K        +  E
Sbjct: 132 YMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCAAVEEEGKRKA--NKEVLDE 189

Query: 160 YCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKL 218
               +      +  + +           YLD         + V         +  +    
Sbjct: 190 TAVFEAVKEMLVRNKRDIEWIRCMNVGSYLDIKAFYPIIRLKVKGRKKYV--LTEKVEDD 247

Query: 219 DQELE 223
            +E+ 
Sbjct: 248 VREIC 252


>gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 946

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|183231928|ref|XP_650756.2| exosome component 10 [Entamoeba histolytica HM-1:IMSS]
 gi|169802269|gb|EAL45368.2| exosome component 10, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 517

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 42/158 (26%), Gaps = 22/158 (13%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D+       Y     V L           + D +       +L +   N ++  V H  
Sbjct: 211 VDVEHHSEHSYY--GFVCLLQISTRSSD-YIIDTITLRDSITLLNDPFTNPNIEKVFHGC 267

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARF 133
            F+   L   F   + +   I +   AR+             L+  S K    K      
Sbjct: 268 DFDMIWLSYNFG--LYVVNCIDSGQCARAL-----------KLQHFSLKYLLQKYCNVDA 314

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            K         R         +   EY +GD      I
Sbjct: 315 DKKYQLADWRLRPLT------KEMIEYARGDTHYLLYI 346


>gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens
           QYMF]
 gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens
           QYMF]
          Length = 1432

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 76/278 (27%), Gaps = 30/278 (10%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVH------ 49
            +  D ET    +    +T+ G  K  +   +  F+   +     P ++ +         
Sbjct: 420 YIVFDIETTGLSNRNDRITEIGAVKIKDSQVIDKFSALVNPEMKIPSKIVELTGITDDMV 479

Query: 50  -DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL--DIPIHRWICTLVLARSNG 104
            D     V+            +VAHNS F+   ++   N       ++ I TL L+R   
Sbjct: 480 VDKQTIDVILPGFLAFIGSSPVVAHNSDFDMGFIRENANRIERTIENQVIDTLKLSRILL 539

Query: 105 L---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN-----KPNHREAWRL 156
                  L ++ + L +S +      +      +         +                
Sbjct: 540 PQLKRHRLNSIAKELNVSLENHHRAVDDAQATAEIFVKFIELLKQKEVYTLEEVNTKLVK 599

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELW-YLDQTINDRGYCVDVALAHTLNQIVDVER 215
             +Y K D      I+ + +       ++          +   V  ++     + + +  
Sbjct: 600 DVDYKKLDTYHIM-IYAKNQKGLKNLYQIISESHLEYFYKKPRVPKSILTKYREGLLIGT 658

Query: 216 TKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLED 253
                EL      L +      +     +    +    
Sbjct: 659 ACEAGELYK--SILGNKPESDIEKTASYYDYLEIQPIS 694


>gi|58696733|ref|ZP_00372277.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698126|ref|ZP_00373049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629990|ref|YP_002726781.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
 gi|58535372|gb|EAL59448.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58537085|gb|EAL60207.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225591971|gb|ACN94990.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
          Length = 231

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 63/238 (26%), Gaps = 42/238 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP------- 54
             L +D ET     L      +  E  CV L         V       +  +P       
Sbjct: 6   RELVLDTETTG---LDTESGHRIIEIGCVELIN-RIPTGKVFHRYLNPERDIPYHSFKIH 61

Query: 55  ---QVL---KEALEN---------TDVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
              +     K    +         ++  +V HN+ F+       L       I   R + 
Sbjct: 62  GISEEFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELSKLNAGLISSDRVLD 121

Query: 96  TLVLAR--SNGLPSALKAVGEALKLSSQKMEEGKELI--ARFCKGETHECLYDRNKPNHR 151
           TL LAR    G P++L A+ +   +S +  E    L+      K         +      
Sbjct: 122 TLPLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFLFDN 181

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ 209
           E        C  D   T    K       +                 ++  L +   +
Sbjct: 182 E--------CNQDSNSTFVQHKVRNLTPREHSPNSEEIDEHKKLLDKINNTLWNKYIE 231


>gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0012]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0411]
 gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0411]
 gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4000]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis HH22]
 gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis HH22]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecalis V583]
 gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis TX0104]
 gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Enterococcus faecalis V583]
 gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis TX0104]
 gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0309B]
 gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0309A]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|317489230|ref|ZP_07947747.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325832235|ref|ZP_08165234.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
 gi|316911631|gb|EFV33223.1| exonuclease [Eggerthella sp. 1_3_56FAA]
 gi|325486071|gb|EGC88525.1| exonuclease DnaQ family/helicase DinG family [Eggerthella sp. HGA1]
          Length = 998

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 39/139 (28%), Gaps = 26/139 (18%)

Query: 2   ATLFIDFETRS---PIDLTKCGICKYAEDVCVIL--FAFGFDDHPVELWDCVH------- 49
             + +D ET       D          E   ++     F  +       D  H       
Sbjct: 41  NVVVLDTETTGFSFNHDELTQIAAARMEQGEIVEWFITF-VNPGKPIPEDVAHLTDIHDS 99

Query: 50  -------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLAR 101
                         L E + +  V  VAHN+ F+RT          +  + WI +L LAR
Sbjct: 100 DVADAPLPADALAKLVEFIGDAKV--VAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLAR 157

Query: 102 SNGL---PSALKAVGEALK 117
                     L  +  A  
Sbjct: 158 IALPRMKSHRLLDLVRAFG 176


>gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1346]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0027]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0017]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
           praevalens DSM 2228]
          Length = 1404

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 85/281 (30%), Gaps = 42/281 (14%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDH---PVELWDCV------- 48
           +  D ET         + + G  KY     +  F +F  +     P ++ +         
Sbjct: 393 IVFDLETTGLNPSQHEIIEIGAVKYQGGKKIAEFESF-INPGVRIPAKITEITGINDRMV 451

Query: 49  -HDPVMPQVLKEALENTDV-TIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN 103
            + P + +V+ + +E      +VAHN+ F+   ++       ++   +  + TL L+R+ 
Sbjct: 452 KNAPGLEKVINDFIEFAGTGVLVAHNADFDYGFIRTALEKLEIEKDDYTVLDTLGLSRAV 511

Query: 104 ---GLPSALKAVGEALKLSSQK----------MEEGKELIARFCKGETHECLYDRNKPNH 150
                   L  + +   +  +             E    +    K +    L   N    
Sbjct: 512 VKDSKNHKLNTLAKYFGVDLENHHRALDDANATAEVLAKLLELIKDDGCHNLNKINDYIS 571

Query: 151 REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
           +  W+    +      V     K+      +   + +L+         +  ++     + 
Sbjct: 572 KIDWKDLRPFHA----VILAENKKGLKNLYQLISISHLNNFYKKP--RILKSVLLQHREG 625

Query: 211 VDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
           + +       ++      + +  R   K    L+    L  
Sbjct: 626 LIIGSACEAGQIYK--AFVNNKPRSEIKKIAKLYDYLELQP 664


>gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2137]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0855]
 gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0855]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|189465280|ref|ZP_03014065.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM
           17393]
 gi|189437554|gb|EDV06539.1| hypothetical protein BACINT_01626 [Bacteroides intestinalis DSM
           17393]
          Length = 164

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 5   FIDFETRSPIDLTKCGICK-YAEDVCVI-----LF-----AFGFDDHPVELWDCVHDPVM 53
            IDFET +    + C +      D  ++     L       + + +  V           
Sbjct: 6   AIDFETANEQRTSVCSVGVVIVRDGEIVDNYYSLIRPEPEYYSYWNTRVHGLTLADTAEA 65

Query: 54  P------QVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTLVLARSNG 104
           P      Q +   +E   + +VAHN  F+ + LKA F    LD P + + CTL  AR   
Sbjct: 66  PVFPVVWQEIAPLIE--GLPLVAHNKGFDESCLKAVFKTYCLDYPDYEFHCTLSTARRRI 123

Query: 105 ---LPSALKAVGEALKLS 119
                  L  V   +   
Sbjct: 124 KGLPSYQLHTVAAYVGYE 141


>gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
           17241]
 gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
           17241]
          Length = 1445

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 64  TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALK 117
           +   ++AHN+ F+ + L        ++        T+VL+RS         L  V + L 
Sbjct: 505 SSAVLIAHNAPFDTSFLRQCARRCGMEYNFTAI-DTVVLSRSLFPELKKHKLDIVAKHLG 563

Query: 118 LSS 120
           L  
Sbjct: 564 LGE 566


>gi|119945380|ref|YP_943060.1| ribonuclease D [Psychromonas ingrahamii 37]
 gi|119863984|gb|ABM03461.1| ribonuclease D [Psychromonas ingrahamii 37]
          Length = 369

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 70/235 (29%), Gaps = 46/235 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T +       G+ + +++  + L        P+ + D            
Sbjct: 24  ISLDTEFVRTRTYAAN----LGLLQISQNTQITLI------DPIAVGDLSS-------FW 66

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           +A++N ++  + H S  +  +++     D+       T +      + ++L         
Sbjct: 67  QAIDNKNI--ILHASSEDLEIIRDHKG-DLNFT-LFDTQIACSFLNMGASL--------- 113

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                  G   +    +    +    R     R        Y   DV   +   ++L+  
Sbjct: 114 -------GYAKMVETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCLEKLQQQ 166

Query: 179 SSKEQELWYLDQTIN----DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
              ++   + +Q        +    D   A+ L   +     +    +++L    
Sbjct: 167 LENKKMFPFFEQECQSVLAQKMVKQDPDKAYKLLNNLFKLDRQGLAIIKALAKWR 221


>gi|187734182|ref|YP_001880647.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94]
 gi|187431174|gb|ACD10448.1| exodeoxyribonuclease X [Shigella boydii CDC 3083-94]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|313673321|ref|YP_004051432.1| 3'-5' exonuclease [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940077|gb|ADR19269.1| 3'-5' exonuclease [Calditerrivibrio nitroreducens DSM 19672]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 54/179 (30%), Gaps = 31/179 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKE 59
             +  D ET       K    K  ++  + L     ++         H   +     + E
Sbjct: 51  KLVGFDTET-------KPSFKKKIKN-HLSLIQIATEN-KAF---LFHLKQIKDKSIIFE 98

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L N ++T +      +   +    N++I  + ++              L+ + + + L 
Sbjct: 99  YLNNPEITKIGAGIADDIKKINELSNIEILKNSFMD-------------LQFIAKQMNLP 145

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              +     L A F      +     N   +    +    Y   D  +  +I+K++   
Sbjct: 146 RTNLRF---LSAYFLNKRIIKSSQTSNWDKYPLTPKQML-YAATDAWICLKIYKKILKN 200


>gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
 gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
          Length = 623

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 38  DDHPVELWDCVH----DPVMPQVLKE---ALENTDVTIVAHNSYFERTVLKA---CFNLD 87
           D  PV +              + +     AL +  V  VAHN+ F+   L          
Sbjct: 76  DPGPVHIHGLTPARLAGAPTFEEIAPQVGALLSGRVL-VAHNAQFDYDFLAHEFAHVRSW 134

Query: 88  IPIHRWICTLVLARSNG---LPSALKAVGEALKLSSQKMEEGKELIA 131
           +P+ R +CTL L R  G       L  +     +  ++  + ++ + 
Sbjct: 135 VPVSRRLCTLALNRLVGSATPDLKLGTLAAHYGVRQERAHDAQDDVR 181


>gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
 gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
          Length = 205

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 29/140 (20%)

Query: 6   IDFETRS----PIDLTKCGICKYAED-----------VCVILF----AFGFDDHPVELWD 46
           ID ET        D+ +    KY  +             + L     +         + D
Sbjct: 14  IDIETTGFNPESNDIIEIAAIKYQGNIILDRFWSLIKPEIELIPEHISKLTGITTAMVID 73

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARS 102
                 +       +EN    +V HN  F+   L        N  I  + +ICT  LAR 
Sbjct: 74  QPTVDKVLPDFLNFIEN--TILVGHNIRFDLAFLNKKAKEILNKTIK-NPFICTDHLARK 130

Query: 103 NGL---PSALKAVGEALKLS 119
                   +L ++ +   + 
Sbjct: 131 ILSDIDSKSLASIAQHFNIP 150


>gi|149915092|ref|ZP_01903620.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
 gi|149810813|gb|EDM70652.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Roseobacter sp. AzwK-3b]
          Length = 481

 Score = 42.0 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 69  VAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGLP---SALKAVGEAL 116
           VAHN+ F+   L        ++   H  + T++L+          +L A+ + L
Sbjct: 361 VAHNAPFDLAFLHRFADRMGVEW-THPVLDTVLLSAVVFGTTEQHSLDALCDRL 413


>gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2134]
 gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative
           [Enterococcus sp. 7L76]
 gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2134]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis ATCC 29200]
 gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
           faecalis TUSoD Ef11]
 gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0102]
 gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis ATCC 29200]
 gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
           faecalis TUSoD Ef11]
 gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0102]
 gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0031]
 gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0312]
 gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1342]
 gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
           faecalis OG1RF]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
 gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
          Length = 315

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 69/254 (27%), Gaps = 31/254 (12%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                +     L+ +   L +         + I      +    + +  K        + 
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASIEEEAKKKSNT--EVL 184

Query: 158 GEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            E    +      +  + +           YLD         + V         +     
Sbjct: 185 DETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTDILE 242

Query: 217 KLDQELESLTYGLV 230
              +E+ +      
Sbjct: 243 DDVKEICTSLACEP 256


>gi|261377592|ref|ZP_05982165.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685]
 gi|269146340|gb|EEZ72758.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685]
          Length = 244

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 56/209 (26%), Gaps = 41/209 (19%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYIHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP--- 89
              +      +      + + + + L      ++ HN+ F+   L        L      
Sbjct: 64  EVLEGK----NAPPFARVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRMGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  +  
Sbjct: 118 GCTITDTLSMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQF 177

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLE 176
               EA    G   K   +   ++  +L+
Sbjct: 178 DLMGEAEEE-GPAAKPVASAEMKLGAKLK 205


>gi|215487057|ref|YP_002329488.1| exodeoxyribonuclease X [Escherichia coli O127:H6 str. E2348/69]
 gi|312967045|ref|ZP_07781263.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|331647439|ref|ZP_08348531.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M605]
 gi|331657890|ref|ZP_08358852.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA206]
 gi|215265129|emb|CAS09517.1| DNA exonuclease X [Escherichia coli O127:H6 str. E2348/69]
 gi|312288509|gb|EFR16411.1| exonuclease family protein [Escherichia coli 2362-75]
 gi|315299931|gb|EFU59169.1| exonuclease [Escherichia coli MS 16-3]
 gi|330911653|gb|EGH40163.1| exodeoxyribonuclease X [Escherichia coli AA86]
 gi|331043163|gb|EGI15301.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli M605]
 gi|331056138|gb|EGI28147.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA206]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L]
 gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
          Length = 315

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 67/257 (26%), Gaps = 37/257 (14%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   NYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  V    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPVFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET---HECLYDRNKPNHREAW 154
                +     L+ +   L +         + I      +     E    R         
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASIEEEAKRKLNKEALDE 186

Query: 155 RLFGEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
            +  E           +  + +           YLD         + V         +  
Sbjct: 187 TVVYE-----AVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTD 239

Query: 214 ERTKLDQELESLTYGLV 230
                 +E+ +      
Sbjct: 240 ILEDDVKEICTSLACEP 256


>gi|332090017|gb|EGI95117.1| exonuclease family protein [Shigella boydii 5216-82]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|326335468|ref|ZP_08201655.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692234|gb|EGD34186.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 453

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 42/146 (28%), Gaps = 43/146 (29%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV--ELWDCVHDPVMPQVL----- 57
           +D ET                +  +   A + FD + V       ++             
Sbjct: 5   LDIETTGGK----------LNEESITEIAIYRFDGNEVTDRFISLINPEKKIDDFVAHLT 54

Query: 58  -----------------KEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
                            K  +E      IVAHN+ F+  +L+        D   +   CT
Sbjct: 55  GISNKMVRNAPKFYEVAKRIIEITDGCIIVAHNAAFDYRILRLEFRRLGFDFHRNTI-CT 113

Query: 97  LVLARSNGL---PSALKAVGEALKLS 119
           + +++         +L  +  +L + 
Sbjct: 114 VEMSQRLLPQESSYSLGKLTRSLGIP 139


>gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0645]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri]
 gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri]
 gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri]
 gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri]
 gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 11/118 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP- 106
            V+ +  KE   +    +VAHN+ F+   +   +    +    +  + TL LAR      
Sbjct: 63  DVVLKRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFLYPHF 120

Query: 107 --SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               L  + +   +      +     E  A        +     +   H       GE
Sbjct: 121 KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHDSLNDYMGE 178


>gi|301026596|ref|ZP_07190019.1| exonuclease [Escherichia coli MS 69-1]
 gi|300395429|gb|EFJ78967.1| exonuclease [Escherichia coli MS 69-1]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVDIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis PC1.1]
 gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4248]
 gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0635]
 gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis PC1.1]
 gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4248]
 gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0635]
 gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1341]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis]
 gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 1437

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 33/143 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDCV---- 48
           ET    D+   G+     D  + L A       +                 + +      
Sbjct: 419 ETYVVFDVETTGLSA-VYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGITD 477

Query: 49  ----HDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVL 99
                 P +  V+++  E   D  +VAHN+ F+   L    K    ++   +  I TL L
Sbjct: 478 DMLQDAPDVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLEL 537

Query: 100 ARSNGL---PSALKAVGEALKLS 119
            R          L  + +   + 
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIE 560


>gi|332141837|ref|YP_004427575.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551859|gb|AEA98577.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
          Length = 385

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 44/175 (25%), Gaps = 25/175 (14%)

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           +D H + L D +    M Q     LENT+V  V H+   +       F  D        T
Sbjct: 47  YDGHQLVLIDPLAIDNM-QPFVALLENTEVVKVLHSCSEDLEAFLTAF--DTVPTPVFDT 103

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            +      +  +L                  +L+   C+    +     +          
Sbjct: 104 QIAGSILDMGPSLG---------------YAKLVELLCEISLDKGESRTDWLARPL-REA 147

Query: 157 FGEYCKGDVTVTREIFKRLEPLSS------KEQELWYLDQTINDRGYCVDVALAH 205
              Y   DV      +++L              E   L           D A   
Sbjct: 148 QLSYAANDVLYLLPCYQQLASNVQALGKVHWIYEEVALLVEKKRAQMPEDFAYLS 202


>gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0470]
 gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0470]
 gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX2141]
          Length = 929

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|331663335|ref|ZP_08364245.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA143]
 gi|331059134|gb|EGI31111.1| exodeoxyribonuclease 10 (Exodeoxyribonuclease X)(Exonuclease X)
           (Exo X) [Escherichia coli TA143]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|294629410|ref|ZP_06707970.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
 gi|292832743|gb|EFF91092.1| DNA polymerase III, epsilon subunit [Streptomyces sp. e14]
          Length = 653

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 16/97 (16%)

Query: 38  DDHPVELW--------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD-- 87
           D  PV +         D      +   +   L++    +VAHN+ F+   L   F     
Sbjct: 63  DPGPVHIHGLTAERLRDAPAFEQVAGRIGALLQD--RVMVAHNAQFDYDFLAHEFARARL 120

Query: 88  -IPIHRWICTLVLARSNGLPS---ALKAVGEALKLSS 120
            +P+++ +CTL L R    P+   +L ++     +  
Sbjct: 121 CLPVNQRLCTLALNRRVEPPAADLSLASLAAHYGVPQ 157


>gi|127513039|ref|YP_001094236.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
 gi|126638334|gb|ABO23977.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
          Length = 242

 Score = 42.0 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 47/163 (28%)

Query: 1   MATLF-------IDFETRSPIDLTKCGICKYAEDVCVILFAF------------------ 35
           M  +        +D ET         G         +I                      
Sbjct: 1   MNIISNAKRQVILDTETTGMN----QGAGAVYFGHRIIEIGCVEVINRKLTGRHFHEYIN 56

Query: 36  ---GFDDHPVELWDCVH----DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNL 86
                D+  + +    +    D  +   +  A         IVAHN+ F+ + +   F+L
Sbjct: 57  PMQAIDEEAITVHGITNEFVADKPVFAQIAPAFLEFIDGAEIVAHNANFDVSFMDHEFSL 116

Query: 87  DIPIHR-------WICTLVLARSNGLPS--ALKAVGEALKLSS 120
             P           + +L +A+         L A+ +   + +
Sbjct: 117 LTPRGPKTTDICQVLDSLEIAKFLHPGQKNNLDALCKRYGIDN 159


>gi|300856800|ref|YP_003781784.1| putative DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436915|gb|ADK16682.1| predicted DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 362

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 83/266 (31%), Gaps = 42/266 (15%)

Query: 4   LFIDFETRSPI----DLTKCGICKYAEDVCVILFAFGFDD-----HPVELWDCVHDPVMP 54
           + +DFET         + + G  KY ++     F F  +        +   + + D ++ 
Sbjct: 62  VALDFETTGLDYRNDKIVEIGAVKYKDEKETDKFHFLINPHIHIPEKITKINGIEDSMVK 121

Query: 55  Q-----VLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIPIHRWICTLVLARSNGLP 106
                  +   L +   ++ IV HN+ F+   L +   +     +  I TL ++R     
Sbjct: 122 DSPSINEVIPKLIDFMGNLPIVVHNARFDIDFLDENMSDNKYRGNSVIDTLSISRKMFE- 180

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG--- 163
                      + + +++  K+ +              R   + + A  ++ +YC+    
Sbjct: 181 ----------NIDNHRLQTIKDYLKIDLNSH-------RAIDDAKVAAEIYLKYCREGYP 223

Query: 164 ---DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              D    R+   ++   +S + +    D       Y +         +    +      
Sbjct: 224 IKKDYDKLRKQKNKINLETSFKYDPIDEDIYKCFIAYKLGYERRDGTLKQF-HKIEDKIS 282

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLE 246
           E+     G    +         +F +
Sbjct: 283 EICKEHGGRYFKTAAKTAKFAIIFDD 308


>gi|294140713|ref|YP_003556691.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
 gi|293327182|dbj|BAJ01913.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 46/153 (30%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD------------ 50
            + +DFET         G+     D  + + A    D    + D   +            
Sbjct: 9   VIILDFETT--------GLSPNQGDRAIEIGAVRIQDG--IVVDTFQELMNPGFRVSGFI 58

Query: 51  -----------------PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-IH 91
                              +     + + + ++  VAHN+ F++  L      +++    
Sbjct: 59  EGYTGISNAMLANAAPCEEVMARFADFIGDHNL--VAHNASFDQRFLDAELDGINLSYGG 116

Query: 92  RWICTLVLARSN---GLPSALKAVGEALKLSSQ 121
           ++ C++++AR          L  + E  ++ + 
Sbjct: 117 KFACSMLIARRLYQDAPNHKLGGLVEYKQIEND 149


>gi|212638970|ref|YP_002315490.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Anoxybacillus flavithermus WK1]
 gi|212560450|gb|ACJ33505.1| DNA polymerase III, epsilon subunit and Rad3-related DNA helicase
           [Anoxybacillus flavithermus WK1]
          Length = 880

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICT 96
               + D      +  +L E  +      VAHN  F+   L+  F    +  P  R + T
Sbjct: 61  DHAMVHDAPPFQHIAAMLVE--QWEGAYFVAHNVQFDWAFLQEEFIRSGIQPPTCRLLDT 118

Query: 97  LVLARSNGLPSA---LKAVGEALKLSSQ 121
           + LAR      +   L  + EAL  +  
Sbjct: 119 VELARFLMPTQSSYKLNHLAEALSFAHD 146


>gi|193076772|gb|ABO11486.2| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
          Length = 497

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 28/181 (15%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDD-HPV 42
             L +D ET        D              LT   I  Y      +  +         
Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVQVHGITDE 329

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP----IHRWICTL 97
            L D      +   L E L      I+AHN+ F+   L      + +P    +     TL
Sbjct: 330 FLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTDTL 387

Query: 98  VLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            LA++       +L A+    ++ ++       L+      + +  +         +A  
Sbjct: 388 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 447

Query: 156 L 156
            
Sbjct: 448 Q 448


>gi|332520671|ref|ZP_08397133.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332044024|gb|EGI80219.1| DNA polymerase III, epsilon subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 444

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 24/139 (17%)

Query: 1   MATLFIDFETRSPID-LTKCGICKYAEDVCVILFAFGFDDHPVELWD------------- 46
           M    ID ET    + +T+  I KY E+  +  F    +  P                  
Sbjct: 1   MFYTIIDVETSGRTNRITEISIFKYHENKIIDEFTSLVN--PNCYIPEHITALTGIDNNT 58

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
             + P   ++  + LE   D   VAHN  F+  V++       +D    +  CT+ L+R 
Sbjct: 59  VANAPEFSEIANKVLEITKDCIFVAHNVNFDYNVIRKEFKRLEIDFTRKKL-CTVRLSRK 117

Query: 103 NGLPS---ALKAVGEALKL 118
                   +L  + + L +
Sbjct: 118 LLPGHRSYSLGKLCKDLNI 136


>gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
 gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
          Length = 334

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 24/138 (17%)

Query: 6   IDFETRSP---IDLTKCGICKYAEDVCV-----ILFAFGFDDHPVELWDCVHD------- 50
           +D ET        +    + +      V      L     D  PV +     D       
Sbjct: 34  VDVETTGLAREDRIVSAAVYRLDAQGNVEDHWYTLVNPQRDPGPVWIHGLTSDMLQDAPL 93

Query: 51  -PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI---CTLVLARSNGLP 106
              +       L +    +VAHN+ F+  ++   +             CT+ L++   LP
Sbjct: 94  FKDIAGEFAGRLAD--RVLVAHNAIFDWQMIAREYARAEETAPVRQRLCTIALSKELNLP 151

Query: 107 ---SALKAVGEALKLSSQ 121
                L+++     +  Q
Sbjct: 152 LPNHKLESLAAHFGVVQQ 169


>gi|170019811|ref|YP_001724765.1| exodeoxyribonuclease X [Escherichia coli ATCC 8739]
 gi|169754739|gb|ACA77438.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC
           8739]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVKPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
 gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC
           9817]
          Length = 1450

 Score = 42.0 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL- 105
             +     E + +  +  VAHN+ F+   +    K     D      I TL +AR     
Sbjct: 490 EEVLPKFMEFVGDATM--VAHNAAFDMGFIRRDVKRLLGYDYTPA-IIDTLQMARDLYPD 546

Query: 106 --PSALKAVGEALKLSSQK 122
                LK + + L LS + 
Sbjct: 547 LKGYGLKNLNKVLGLSLES 565


>gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 315

 Score = 42.0 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 67/257 (26%), Gaps = 37/257 (14%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET---HECLYDRNKPNHREAW 154
                +     L+ +   L +         + I      +     E    R         
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASIEEEAKRKLNKKALDE 186

Query: 155 RLFGEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDV 213
            +  E           +  + +           YLD         + V         +  
Sbjct: 187 TVVYE-----AVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTD 239

Query: 214 ERTKLDQELESLTYGLV 230
                 +E+ +      
Sbjct: 240 ILEDDVKEICTSLACEP 256


>gi|189463384|ref|ZP_03012169.1| hypothetical protein BACCOP_04103 [Bacteroides coprocola DSM 17136]
 gi|189429813|gb|EDU98797.1| hypothetical protein BACCOP_04103 [Bacteroides coprocola DSM 17136]
          Length = 164

 Score = 42.0 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 26/139 (18%)

Query: 5   FIDFETRSPIDLTKCGICK-YAEDVCV-----ILF-----AFGFDDHPVELW---DCVHD 50
            IDFET +    + C +      +  +      L       + + +  V      D    
Sbjct: 6   AIDFETANKERSSVCSVGIVIVRNGEITEKLYRLIRPYPNYYSYWNTQVHGLTFQDTACA 65

Query: 51  PVMPQVLKEALENT---DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-RSN 103
           P  P+V KE   +     + +VAHNS F+   LK     +N++ P + + CT   + R+ 
Sbjct: 66  PTFPEVWKEI--DPIIAGLPLVAHNSPFDEGCLKAAFQAYNMEYPDYTFHCTCRASRRTF 123

Query: 104 G---LPSALKAVGEALKLS 119
           G       L+ V       
Sbjct: 124 GKSLPNHQLQTVALKCGYD 142


>gi|317493310|ref|ZP_07951732.1| DNA polymerase family B [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918703|gb|EFV40040.1| DNA polymerase family B [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 784

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 59/220 (26%), Gaps = 68/220 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPV-----ELWDCVHD 50
             + +D ET    +L   G+        Y              +        EL      
Sbjct: 155 KLVSLDIETTMHGELYSIGLHGCGQRVVYMLGPE---------NGDASQLDFELIYVNSR 205

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHRWICTLVL----- 99
           P + + L + +   + D   +  N   F+  VL+     + + + + R    L       
Sbjct: 206 PQLLEALNQWIAQHDPDAI-IGWNLIQFDLRVLQKHAERYAIPLRLGRGGDVLEWREHGF 264

Query: 100 -----------------------ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                                  A  N    +L+ V + L      + EGK +   + + 
Sbjct: 265 KQGHFFASATGRLIIDGIEALKSAFWNFPSFSLENVSQTL------LGEGKAMDDPYSRM 318

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              +  +  +KP           Y   D  +   IF    
Sbjct: 319 SEIDRRFREDKP-------ALAHYNLKDCELVTRIFDHTH 351


>gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0109]
 gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0109]
 gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX1302]
          Length = 929

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|291386094|ref|XP_002709593.1| PREDICTED: Werner syndrome protein [Oryctolagus cuniculus]
          Length = 1416

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 50/216 (23%), Gaps = 33/216 (15%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    +    +   V L      +    L+      V PQ LK  LEN  +        
Sbjct: 82  DMEWPPVYTKGKSSRVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAIKK------ 135

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 136 ---------AGIGIEGDQWKLLRDFDIKLKSFV-----ELTDVANE-KLKCAETWSLNGL 180

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           +      +  +    R               Y   D      I+++         +   +
Sbjct: 181 VKHLLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYRK----LEILGDAVQM 236

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
                  G  +  +        +  E   L  +L  
Sbjct: 237 FAISE--GEEILPSDMKKQLTSISEEVMDLANQLPD 270


>gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
 gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
 gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0043]
          Length = 929

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0860]
 gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0860]
          Length = 929

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1565

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 27/142 (19%)

Query: 4   LFIDFETRS----PIDLTKCGICKYAEDVCV-----------ILFAFGFDD----HPVEL 44
           +  D ET         + + G  K   D  +           +   F  +     +   +
Sbjct: 543 VVFDIETTGFSPKKNKIIEIGAVKVV-DGRITDKFSTFVNPDVPIPFDIEKLTGINDSMV 601

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIHR-WICTLVLARS 102
                  V+     E + +    +VAHN+ F+   +      L++P     + T+ +AR 
Sbjct: 602 LPYPKIDVILPQFLEFVGDA--VLVAHNASFDVGFIGHFAEKLELPFDPTVLDTVAIARL 659

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  V +AL +S Q
Sbjct: 660 LLPNLNRFKLDTVAKALNISLQ 681


>gi|313905697|ref|ZP_07839058.1| hypothetical protein EubceDRAFT_1773 [Eubacterium cellulosolvens 6]
 gi|313469521|gb|EFR64862.1| hypothetical protein EubceDRAFT_1773 [Eubacterium cellulosolvens 6]
          Length = 66

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 651 MTSNPSWAKGLPLKAEGYESKRYRK 675
           M  +P W   + L+A+GYE+  Y+K
Sbjct: 41  MGRSPDWIPDILLRADGYETNFYKK 65


>gi|288802306|ref|ZP_06407746.1| 3'-5' exonuclease domain protein [Prevotella melaninogenica D18]
 gi|288335273|gb|EFC73708.1| 3'-5' exonuclease domain protein [Prevotella melaninogenica D18]
          Length = 224

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 31/177 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID ETR    + K G  +      V L      D  V     ++   +P  +K  L
Sbjct: 46  DIIGIDTETR---PVFKKGQRR-----KVALLQAC--DREVCFLFRLNLIGVPDCIKRFL 95

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+T V  V  +   +  +L     LD     +I              L+   ++L +   
Sbjct: 96  EDTTVPKVGLSLGDDMLML--HQRLDFKPGYFID-------------LQDYVKSLGIEDM 140

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTREIFKRLEP 177
            +++           +      ++     +         Y   D     ++++RL  
Sbjct: 141 SLQKL-----YANVFQERITKREQLSNWENEILSDKQKIYASTDAWTCIKLYERLHE 192


>gi|257792837|ref|YP_003183443.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
 gi|257476734|gb|ACV57054.1| DNA polymerase III, epsilon subunit [Eggerthella lenta DSM 2243]
          Length = 966

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 39/139 (28%), Gaps = 26/139 (18%)

Query: 2   ATLFIDFETRS---PIDLTKCGICKYAEDVCVIL--FAFGFDDHPVELWDCVH------- 49
             + +D ET       D          E   ++     F  +       D  H       
Sbjct: 9   NVVVLDTETTGFSFNHDELTQIAAARMEQGEIVEWFITF-VNPGKPIPEDVAHLTDIHDR 67

Query: 50  -------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLAR 101
                         L E + +  V  VAHN+ F+RT          +  + WI +L LAR
Sbjct: 68  DVADAPLPADALAKLVEFIGDAKV--VAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLAR 125

Query: 102 SNGL---PSALKAVGEALK 117
                     L  +  A  
Sbjct: 126 IALPRMKSHRLLDLVRAFG 144


>gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           62]
          Length = 929

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
 gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
          Length = 1437

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL-- 105
            + +  +E +++    +VAHN+ F+   L    K    ++   +  I TL L R      
Sbjct: 488 DVVRDFREWIDDD--ILVAHNASFDMGFLNVAYKRLLKVEKAQNPVIDTLELGRFLYPEF 545

Query: 106 -PSALKAVGEALKLS 119
               L  + +   + 
Sbjct: 546 KNHRLNTLCKKFDIE 560


>gi|225180860|ref|ZP_03734308.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT
           1]
 gi|225168341|gb|EEG77144.1| DNA polymerase III, epsilon subunit [Dethiobacter alkaliphilus AHT
           1]
          Length = 269

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 51/190 (26%), Gaps = 49/190 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------ 43
             +  D ET         G   Y  D  + + A   ++  ++                  
Sbjct: 77  RYIIFDTETT--------GFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSIPQA 128

Query: 44  LWDCVH--DPVMPQV--LKEALEN-----TDVTIVAHNSYFERTVLKACFNLDIPI---H 91
           + D     D ++     +   L +      D  +VAHN+ F+   L    N        +
Sbjct: 129 VCDLTGITDDMVADKCGICSVLSDFLDFIGDSVLVAHNAEFDLAFLNIKLNWYTQTEIYN 188

Query: 92  RWICTLVLARSNGL---PSALKAVGEALKLSS--------QKMEEGKELIARFCKGETHE 140
             I T  L R+         L  +    ++            +   +  +    K E  E
Sbjct: 189 PVIDTYKLGRALYPQLLSHDLDTLIRHHRVKERPRHTALGDSLMTAEIFLDYLKKLEKEE 248

Query: 141 CLYDRNKPNH 150
               +    +
Sbjct: 249 ITTLKQLYYY 258


>gi|312066427|ref|XP_003136265.1| 3'-5' exonuclease [Loa loa]
 gi|307768577|gb|EFO27811.1| 3'-5' exonuclease [Loa loa]
          Length = 845

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 2/64 (3%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            + D         +L E   + ++  V H +  +   L+  F + +       T    R 
Sbjct: 313 YIIDPFPLWNDMHILNEPFTDPNILKVFHGADSDIVWLQRDFGIYV--VNMFDTYKAMRV 370

Query: 103 NGLP 106
               
Sbjct: 371 LNYS 374


>gi|226355514|ref|YP_002785254.1| ATP-dependent DNA helicase [Deinococcus deserti VCD115]
 gi|226317504|gb|ACO45500.1| putative ATP-dependent DNA helicase [Deinococcus deserti VCD115]
          Length = 1683

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 20/114 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCV---ILFAFGFDDHPVELWDCV-------- 48
            + +D ET S        +   A   ED  +   +      +  P E+ +          
Sbjct: 9   YVILDTETTSVDRAEARLLEVAAVRVEDGRICDTLQLLVSGERIPREVAELTGIRQEELD 68

Query: 49  -HDPVMPQVLKEALE-NTDVTIVAHNSY-FERTVLKACFN---LDIPIHRWICT 96
                +P VLK+ L    D+ +V HN+  F+  +LK       L   +     T
Sbjct: 69  RDGQPLPDVLKQVLAFMGDLPVVGHNAQGFDVPLLKRLCREQSLKFQVPFVFDT 122


>gi|255690157|ref|ZP_05413832.1| exonuclease [Bacteroides finegoldii DSM 17565]
 gi|260624444|gb|EEX47315.1| exonuclease [Bacteroides finegoldii DSM 17565]
          Length = 184

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 26/139 (18%)

Query: 5   FIDFETR--SPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL---------------WDC 47
            IDFET       +   G+    E   +          P                   + 
Sbjct: 6   AIDFETANGKRTSICSVGVVIVKEGKIINKIYRLIRPAPNYYTQWTTAVHGLTYDDTIEA 65

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLAR-SN 103
              P +   +K  +    + +VAHNS F+   L+A    + +  P +++ CT   +R   
Sbjct: 66  DDFPEVWAEIKPLI--DGLPLVAHNSPFDEGCLRAVHELYGMTYPPYKFYCTCRASRKVF 123

Query: 104 G---LPSALKAVGEALKLS 119
           G       L  V       
Sbjct: 124 GKELPNHQLHTVAARCGYD 142


>gi|68478473|ref|XP_716738.1| hypothetical protein CaO19.3431 [Candida albicans SC5314]
 gi|68478594|ref|XP_716679.1| hypothetical protein CaO19.10935 [Candida albicans SC5314]
 gi|46438355|gb|EAK97687.1| hypothetical protein CaO19.10935 [Candida albicans SC5314]
 gi|46438419|gb|EAK97750.1| hypothetical protein CaO19.3431 [Candida albicans SC5314]
          Length = 1228

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 64/509 (12%), Positives = 136/509 (26%), Gaps = 77/509 (15%)

Query: 155 RLFGEYCKGDVTVTR--EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA-LAHTLNQIV 211
            LF      ++ +T    I   L  L  +   L+++D          D       L +  
Sbjct: 543 ELFKTSKGEEMNLTLKTRITPLLLRLKWEGHPLFWVDSQGWCFKVPFDDDNEIARLTEKK 602

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
            V+    ++EL      L++  +         ++   +   +   + C  +LS       
Sbjct: 603 YVQPKLTEEELMETRDALLTKGKS--------YVLFKVPHPNGPSSRCTHILSKLYVRNF 654

Query: 272 QAIQVFNNRMRASRSAVLKLNT--LVEAMNSDGRLRGTLQFLGASRTG--RWSGCVFPPQ 327
           +   + +    A++   L       +   N            G ++              
Sbjct: 655 EDGTLTSEYDYATKILNLNNEASYWLGNRNRIKDQFVVYNQQGKNKFFDTIKKSKEHSSM 714

Query: 328 NLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEAR 387
            +  P+ +            T +T+       I   ++S V A +G   V AD+   E  
Sbjct: 715 GIIIPNLATMGTITRRATENTWLTASNAKKNRIGSELKSLVEAPKGYCFVGADVDSEELW 774

Query: 388 VLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKA 447
           +          +                +     +Q T        +    LG       
Sbjct: 775 IA-------SLVGDSMLQIHGGTALGWMTLEGEKSQKTDLHSKTASI----LGISRNDAK 823

Query: 448 FQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVK 507
                   G  +     L+K  +A    E+A+   R + ++         ++ +      
Sbjct: 824 VFNYGRIYGAGVKFATRLLKQFNANITDEEADKVARQLYDSTKGRTAVSKYLPS------ 877

Query: 508 KAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRS 567
              R  +     +     +A  Q  E    ++     D                      
Sbjct: 878 ---RIYYGGTESIMFNALEAIAQQEEPKTPVLGASITDA--------------------- 913

Query: 568 LVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNATKAG 621
                +       N           Y        +Q+   D   +L   M   +      
Sbjct: 914 -----LNVKNLNTNQ----------YMTSRVNWTIQSSGVDYLHLLIISMEYLIEKYGID 958

Query: 622 YDIVLTVHDEIVCETPDTDEFNASMLYHL 650
             + +TVHDE+     +TD++ A++L  +
Sbjct: 959 ARLAITVHDELRYLVKETDKYKAALLLQI 987


>gi|22126121|ref|NP_669544.1| ribonuclease D [Yersinia pestis KIM 10]
 gi|45441720|ref|NP_993259.1| ribonuclease D [Yersinia pestis biovar Microtus str. 91001]
 gi|108807454|ref|YP_651370.1| ribonuclease D [Yersinia pestis Antiqua]
 gi|108811715|ref|YP_647482.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|145598343|ref|YP_001162419.1| ribonuclease D [Yersinia pestis Pestoides F]
 gi|167469552|ref|ZP_02334256.1| ribonuclease D [Yersinia pestis FV-1]
 gi|186895427|ref|YP_001872539.1| ribonuclease D [Yersinia pseudotuberculosis PB1/+]
 gi|21959080|gb|AAM85795.1|AE013826_7 RNase D [Yersinia pestis KIM 10]
 gi|45436582|gb|AAS62136.1| ribonuclease D [Yersinia pestis biovar Microtus str. 91001]
 gi|108775363|gb|ABG17882.1| ribonuclease D [Yersinia pestis Nepal516]
 gi|108779367|gb|ABG13425.1| ribonuclease D [Yersinia pestis Antiqua]
 gi|145210039|gb|ABP39446.1| ribonuclease D [Yersinia pestis Pestoides F]
 gi|186698453|gb|ACC89082.1| ribonuclease D [Yersinia pseudotuberculosis PB1/+]
          Length = 386

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 65/246 (26%), Gaps = 54/246 (21%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV- 56
            + +D E     T                   + L    +D   + L D +    + +  
Sbjct: 37  HIALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPL---PITEWQ 77

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA---LKAV 112
             +  L++ +V    H    +  V    F  D      I T VLA  +G   +      V
Sbjct: 78  PFRALLQDLNVVKYLHAGSEDLEVFLNAF--DQMPTPMIDTQVLAAFSGRSLSCGFAMLV 135

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            E   +   K E   + IAR                          +Y   DV     + 
Sbjct: 136 AEFEGVELDKSESRTDWIARPLS-------------------EKQCDYAAADVFYLLPLA 176

Query: 173 KRLEPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYG 228
            +L   +      +            R   +D  LA+         R      L+ L   
Sbjct: 177 AKLVEATEAAGRMDAAKDECLLLCRRRSETLDPELAYREITNAWQLRGHQLACLQKLAEW 236

Query: 229 LVSSSR 234
            +  +R
Sbjct: 237 RLRQAR 242


>gi|330466515|ref|YP_004404258.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
 gi|328809486|gb|AEB43658.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 56/374 (14%), Positives = 96/374 (25%), Gaps = 65/374 (17%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D  +    +Y++   ++            +            L   + +T+   V H + 
Sbjct: 79  DAERASGYRYSQRAYLVQLRRS-GAGTALIDPLPLPD--LSALDAVIADTE--WVLHAAN 133

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARF 133
            +   L     L +   R   T + AR  G     L A+ E L         G  L    
Sbjct: 134 QDLPCLAE---LGLRPRRLFDTELAARLAGFERVGLAALTEQL--------LGYSL---- 178

Query: 134 CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS------SKEQELWY 187
              E H    D +     E+W     Y   DV +  ++   L+            +E + 
Sbjct: 179 ---EKHHSAADWSSRPLPESW---LTYAALDVELLTDLRDALDAELTRQGKSQWAEEEFA 232

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
                  R   V        + I  V   +    + SL           +++        
Sbjct: 233 ALVQAGTRPPRVRAEPWRRTSGIHRVRGARAQARVRSL-------WYARDQIAARRDSAP 285

Query: 248 GLHLEDLT-------ETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN- 299
           G  L D         +   ++ L +                   R A   L  L +A   
Sbjct: 286 GRVLPDSAIVAAAELDPKDEKTLLTLPGFGG---------RSVRRLARTWLAALDDARQL 336

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            D  L  T    G     RW+            + +     + +        + P    I
Sbjct: 337 PDEDLPVTPTVEGPPPPHRWAERDP-------AAAARLARSREVVLRLAGEHNLPPENLI 389

Query: 360 ISDCVRS-CVIASE 372
             D VR       E
Sbjct: 390 SPDTVRRLAWQPPE 403


>gi|302833517|ref|XP_002948322.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
           nagariensis]
 gi|300266542|gb|EFJ50729.1| hypothetical protein VOLCADRAFT_58009 [Volvox carteri f.
           nagariensis]
          Length = 191

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 24/140 (17%)

Query: 43  ELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
            + D       +   L     +  V  V H +  +   L+   +  + +     T   AR
Sbjct: 50  YVVDTLALRNQLGPALARVFADPRVVKVFHGADSDVDWLQR--DFSLFLVNMFDTGQAAR 107

Query: 102 SNGLPS-ALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
             GLPS  L  + E++  + + K  +  +   R                           
Sbjct: 108 VLGLPSFGLAYLLESICGVQADKRYQMADWRVRPLSPP-------------------MLH 148

Query: 160 YCKGDVTVTREIFKRLEPLS 179
           Y + D      ++ +L    
Sbjct: 149 YARCDTHYLLYVYDKLREQL 168


>gi|296101862|ref|YP_003612008.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056321|gb|ADF61059.1| ribonuclease D [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 384

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 51/201 (25%), Gaps = 42/201 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVL 57
           + +D E     T                   + L    +D   V L D        P  +
Sbjct: 34  IALDTEFVRTRTYY---------------PQLGLIQM-YDGKHVSLIDPLGITDWTP--M 75

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           ++ L +T VT   H    +  V    F +       I T +LA  +  P +        +
Sbjct: 76  RDLLLDTAVTKYLHAGSEDLEVFLNTFGI--MPQPLIDTQILAAFSNRPLSWGFAAMVEE 133

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            +   +++ +       +  T                    +Y   DV     I  +L  
Sbjct: 134 YTGLTLDKSESRTDWLARPLT----------------ERQLDYAAADVFYLLPIAGQLMK 177

Query: 178 LSSKEQELWYLDQTINDRGYC 198
            +     L             
Sbjct: 178 EAEASGWLPAALDECRMTQQR 198


>gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sanguinis PC909]
 gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
           sanguinis PC909]
          Length = 1528

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
             + +  KE   + D  +VAHN+ F+   L+     FNL +  +  + TL LAR  
Sbjct: 499 EDVMKRFKEW--SEDCVLVAHNAAFDMGHLEQTYKRFNLGVCDNPVLDTLALARVL 552


>gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Oceanobacillus iheyensis HTE831]
 gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 939

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 39/151 (25%)

Query: 2   ATLFIDFETR----SPIDLTKCGICKYAEDVCVI---------------------LFAFG 36
             + ID ET     S  D          E   +I                       +  
Sbjct: 3   RFVVIDLETTGHAPSKNDKIIEIGMVIIEGDEIIDTKTTFFNPGQPIPPFITNLTGIS-- 60

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRW 93
             D  V       +  +   +K  LE++ +  +AHN  F+   L        +D   ++ 
Sbjct: 61  --DDDVADAPLFTEKAL--SIKSILEDSYI--IAHNVNFDLGFLNAELKENGIDRLHNQV 114

Query: 94  ICTLVLARSN---GLPSALKAVGEALKLSSQ 121
           + T+ L+R          L  + +   L   
Sbjct: 115 LDTVELSRILFPTAPGYKLSQLSDHFNLQHD 145


>gi|322373090|ref|ZP_08047626.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C150]
 gi|321278132|gb|EFX55201.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus sp. C150]
          Length = 828

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL--- 105
            + + + + +E+     VAHN  F+  +L         ++   R   T+ LA+       
Sbjct: 75  EIARKIFDLIED--CIFVAHNVKFDANLLSEALFMEGYELRTPRV-DTVELAQVFYPTLE 131

Query: 106 PSALKAVGEALKLS 119
              L  + + L L 
Sbjct: 132 HYKLSHLSKVLNLD 145


>gi|256425477|ref|YP_003126130.1| hypothetical protein Cpin_6525 [Chitinophaga pinensis DSM 2588]
 gi|256040385|gb|ACU63929.1| hypothetical protein Cpin_6525 [Chitinophaga pinensis DSM 2588]
          Length = 241

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 49/185 (26%), Gaps = 43/185 (23%)

Query: 21  ICKYAEDVCVILFAFGF---DDHPVEL-WDCVHDPVMPQVLKEALE--NTDVTIV----- 69
              YAE   ++  + GF   ++   +L    +H      +L   LE  N   T       
Sbjct: 57  AGIYAEFGKIVCISVGFFYVENGRYQLRIKSIHGDDEKVLLNSFLELVNKFHTKFPRFQF 116

Query: 70  -AHNSY-FERTVLKAC--------------FNLDIPIHRWICTLVLARSNGLPS--ALKA 111
             HN   F+   +                           + T+ L R     +  +LK 
Sbjct: 117 AGHNIKEFDIPFICRRSVIHQLSLPLPLQIHGFKPWELPMLDTMQLWRFGDFKNYTSLKL 176

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +   + + + K                 +                   YC+ DV    ++
Sbjct: 177 LTAIMGIPTPKD--------------DIDGSMVGRVYWQDHDLDRIASYCQKDVVAVGQL 222

Query: 172 FKRLE 176
             R +
Sbjct: 223 LMRFK 227


>gi|189208179|ref|XP_001940423.1| DNA polymerase gamma [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187976516|gb|EDU43142.1| DNA polymerase gamma [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1526

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 63/272 (23%), Gaps = 24/272 (8%)

Query: 361  SDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVA 420
               ++S V A +G   V AD+   E   +A + G+                   ++    
Sbjct: 1069 GSELKSMVRAPKGYCFVGADVDSQEL-WIASLIGDATFQLHGGNAVGFMTLEGTKAAGTD 1127

Query: 421  PAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
                T       R   KV      Y  G K    +      +L             +  +
Sbjct: 1128 LHSRTAAILGISRNDAKVFNYGRIYGAGLKFASTLLRQFNPSLTDAQTTKTAEDLYKNTK 1187

Query: 477  DAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSE---------------LW 521
              +   + + E        + F+    E   +  R +   +                   
Sbjct: 1188 GMKTNRKQLHERSFWRGGTESFVFNKLEDFAEQERPRTPVLGAAITEALQRRYLSKGGFM 1247

Query: 522  NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLN 581
                    Q+       +     D        D    I +    R LV  +     +   
Sbjct: 1248 TSRINWAIQSSGVDYLHLLIVSMDYLTRRFNLDCRLSITVHDEIRYLVKEEDKYKAAMAL 1307

Query: 582  TTTRQLTREYTYGGKLTENIVQA----VSRDI 609
                  TR           + Q+     + DI
Sbjct: 1308 QIANVWTRAMFSQQMGINELPQSCAYFSAVDI 1339


>gi|149174964|ref|ZP_01853588.1| ribonuclease D [Planctomyces maris DSM 8797]
 gi|148846301|gb|EDL60640.1| ribonuclease D [Planctomyces maris DSM 8797]
          Length = 395

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 66/267 (24%), Gaps = 34/267 (12%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            +  D E           + ++     + L  F  +   V +     D        + + 
Sbjct: 24  IVAFDTE----------FVSEFTYRPELSLLQFAVNGQAVAVDPYEMDD--LSPWWDIMT 71

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           + D  IV H    E    +                        P  L  +  A  L S+ 
Sbjct: 72  DDDTVIVVHGGREEVRFCRHFSGKK------------------PRKLVDLQIAEGLRSRS 113

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                  +      E       R     R   +   +Y   DV    +I+K  E      
Sbjct: 114 FPISYTALVARVLNEKAGSKETRTDWRRRPLTQQQIKYALDDVKFVLKIWKIQEKELIDL 173

Query: 183 QELWYLDQTINDRGYCVDVALAHT---LNQIVDVERTKLDQELESLTYGLVSSSRCLEK- 238
             L + +         VD             +   + +    +  L       ++   + 
Sbjct: 174 GRLDWAEAEFQRMIDEVDSEFHRENWRRVSGLHKLKPRELAIVRELFDWRDEVAQEKNQP 233

Query: 239 LKTWLFLETGLHLEDLTETTCQRVLSS 265
            +  L  +  + L      T Q + ++
Sbjct: 234 ARRILRDDLLIELARRKPATPQDLTAT 260


>gi|307689099|ref|ZP_07631545.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
          Length = 68

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 574 GNNRSYLNT-TTRQLTREYTYGGKLTENIVQAVSRDILAEGM 614
           G + +Y    +T++  R  + G K  ENIVQA+SRDIL   +
Sbjct: 16  GESITYEGVDSTKKWGRLESCGPKFVENIVQAISRDILINAL 57


>gi|307243879|ref|ZP_07526004.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678]
 gi|306492701|gb|EFM64729.1| 3'-5' exonuclease [Peptostreptococcus stomatis DSM 17678]
          Length = 172

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
           D +    +    ++ + +  +  +AHN+ F+   L       NLD PI ++ICT+ +
Sbjct: 70  DALPLEDVLPNFRKFIGDRTI--IAHNAKFDIGFLNYYLEKMNLD-PIDKYICTMEM 123


>gi|302421258|ref|XP_003008459.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261351605|gb|EEY14033.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 586

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 12/94 (12%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L  D E     ++S        + + A    + LF        V L+    D +M   
Sbjct: 185 KVLGFDLEWQPSASKSSGPRRNVSLIQLASPSRIALF-------HVALFPGADDDLMAPT 237

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPI 90
            ++ +E+ DVT    N   + T L+  F++    
Sbjct: 238 FRQIMEDPDVTKAGVNIKGDCTRLRNWFDVGTRG 271


>gi|217970689|ref|YP_002355923.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
 gi|217508016|gb|ACK55027.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
          Length = 239

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 43/152 (28%), Gaps = 38/152 (25%)

Query: 1   MATLFIDFETRSPI------------------DLTKCGICKYAEDVCVILFAFGFDDHPV 42
           M  + +D ET                       LT      Y           G D   V
Sbjct: 1   MRQIVLDTETTGLDWRNGDRVIEIGCVELLDRSLTGRHYHVYINPGR------GIDAEAV 54

Query: 43  ELWDCVH----DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF------NLDIPI 90
            +         D      +    E+   D  +V HN+ F+   L A         L    
Sbjct: 55  AVHGITEEFLADKPKFADIVADFEDFVRDAELVIHNASFDVGFLDAELERLGRAKLGALC 114

Query: 91  HRWICTLVLARSNGLP--SALKAVGEALKLSS 120
              + TL LA+       ++L A+ +  ++ +
Sbjct: 115 AGVVDTLKLAKEQNPGKKASLDALCDRYEIDN 146


>gi|218710290|ref|YP_002417911.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32]
 gi|218323309|emb|CAV19486.1| DNA polymerase III, epsilon subunit [Vibrio splendidus LGP32]
          Length = 255

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/168 (10%), Positives = 41/168 (24%), Gaps = 44/168 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF---------------------GFDDH 40
             + +D ET     +   G   Y     ++                            + 
Sbjct: 22  RIIVLDTETTG---MNTEGGPHYMGH-RIVEIGAVEIINRKLTGRHFHVYIKPDRAIQEE 77

Query: 41  PV--------ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------N 85
            +         L D      + +   + +      +VAHN+ F+   +   F        
Sbjct: 78  AIGVHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNPAIG 135

Query: 86  LDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                 +   TL +A+         L  + +   + +        L+ 
Sbjct: 136 KTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLD 183


>gi|262170796|ref|ZP_06038474.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|261891872|gb|EEY37858.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 247

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 11/90 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIH---RWICTLVLARSN 103
             +     + +++ ++  VAHN+ F+               +      +   TL +A+  
Sbjct: 85  KDVHDEFLDFIKDAEL--VAHNAPFDVGFMDYEFAKLGGSVVKTTDFCKVTDTLAMAKRI 142

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  L  + E   + +        L+ 
Sbjct: 143 FPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|258627375|ref|ZP_05722159.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
 gi|258580413|gb|EEW05378.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
          Length = 247

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 11/90 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIH---RWICTLVLARSN 103
             +     + +++ ++  VAHN+ F+               +      +   TL +A+  
Sbjct: 85  KDVHDEFLDFIKDAEL--VAHNAPFDVGFMDYEFAKLGGSVVKTTDFCKVTDTLAMAKRI 142

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  L  + E   + +        L+ 
Sbjct: 143 FPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|222109241|ref|YP_002551505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY]
 gi|221728685|gb|ACM31505.1| DNA-directed DNA polymerase [Acidovorax ebreus TPSY]
          Length = 218

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 69  VAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLS 119
           VAHN+ F+R   +       L    H + CT++L+R         +L  + + L L 
Sbjct: 89  VAHNAAFDRKFWQAEMQHAGLA-APHPFACTVLLSRRVYPDAPSHSLGRLTDHLGLP 144


>gi|161503006|ref|YP_001570118.1| exodeoxyribonuclease X [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864353|gb|ABX20976.1| hypothetical protein SARI_01068 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 231

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDR----PITPQAMAIHRITESMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDVIPLYYGSQWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|121596441|ref|YP_988337.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
 gi|120608521|gb|ABM44261.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
          Length = 218

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 69  VAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLS 119
           VAHN+ F+R   +       L    H + CT++L+R         +L  + + L L 
Sbjct: 89  VAHNAAFDRKFWQAELQHAGLA-APHPFACTVLLSRRVYPDAPSHSLGRLTDHLGLP 144


>gi|116333325|ref|YP_794852.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus brevis ATCC 367]
 gi|116098672|gb|ABJ63821.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus brevis ATCC 367]
          Length = 178

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 31/147 (21%)

Query: 1   MATLFIDFET-----RSPIDLTKCGI--CKYAEDVCVILFAFGFDDHPVELW-------- 45
           M  + +DFET      S   L    +   +  ++   +             W        
Sbjct: 1   MNFVAMDFETASGKRYSACSLALTIVRNDQVVDEFYSL-----IKPDTDFFWRNVQIHGI 55

Query: 46  ---DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKACF-NLDIPIHRW--ICTL 97
              D  + P  P+V +        D  ++AHN+ F+  VL++   + ++P  R+  + T+
Sbjct: 56  HERDVANAPTFPEVWQHVAPFFQRDRLVIAHNAPFDNGVLRSSLEHYNLPPARYLTLDTV 115

Query: 98  VLARSN---GLPSALKAVGEALKLSSQ 121
             +R          L  V + L +   
Sbjct: 116 KTSRKFFPEFPNHKLDTVCDELDIDLH 142


>gi|313205456|ref|YP_004044113.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
           propionicigenes WB4]
 gi|312444772|gb|ADQ81128.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
           propionicigenes WB4]
          Length = 189

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 34/130 (26%), Gaps = 35/130 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAF--------GFDDH------PVELWDCV 48
            LF D ET       K  +        ++  A+                           
Sbjct: 2   YLFFDTETTGLPRDWKAPVSDLNNWPRLVQLAYLFFDSNGNKIAGGDFIIKPEGFTIPTE 61

Query: 49  --------------HDPVMPQVLKEA--LENTDVTIVAHNSYFERTV-----LKACFNLD 87
                             +  VL++   + N    +VAHN  F+  +     L+      
Sbjct: 62  ASRIHGITTERANQEGKPIQTVLRDFQSMINEAQYLVAHNMSFDEKIVGAEFLRNNMPDS 121

Query: 88  IPIHRWICTL 97
           I   R ICT+
Sbjct: 122 IAPKRKICTM 131


>gi|296472378|gb|DAA14493.1| Werner syndrome [Bos taurus]
          Length = 744

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 65/238 (27%), Gaps = 44/238 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             +  D E        K  + + A      L      +    L+        PQ LK  L
Sbjct: 75  DVVGFDIE---WPPFKKGTLSRVA------LIQLCVAESKCYLFHISSMSGFPQGLKMLL 125

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSS 120
           EN  +                   + I   +W       +        LK++ E   +++
Sbjct: 126 ENEAIKK---------------AGVGIEQDQW-------KLLRDFDINLKSIVELTDVAN 163

Query: 121 QKMEEGKE-----LIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
           +K++  +      L+      +  +    R     R         Y   D      I+++
Sbjct: 164 EKLKCIETWSLNGLVKYLFGKQLLKDRSIRCSDWSRFPLTEDQKVYAATDAYAGFIIYQK 223

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L  LS   Q   ++     +    +  +        +  E   L + L      L + 
Sbjct: 224 LANLSDPVQ--IFVKSKEEE----ILPSDVKKQLTSISKEMMDLAERLPDTFGKLENP 275


>gi|169614686|ref|XP_001800759.1| hypothetical protein SNOG_10490 [Phaeosphaeria nodorum SN15]
 gi|160702800|gb|EAT81884.2| hypothetical protein SNOG_10490 [Phaeosphaeria nodorum SN15]
          Length = 1130

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 94/363 (25%), Gaps = 42/363 (11%)

Query: 167 VTREIFKRLEPLSSKEQELW-------YLDQTINDRGYCVDVALAHTLNQIVDVERTKLD 219
           +  ++     PL   ++  W        +          +D++    L      +     
Sbjct: 519 ILLKLSWDGYPLVWSDKHGWTYQVPMDEVFAYNERGMKELDMSEEENLKLRDATQYVYY- 577

Query: 220 QELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN 279
            ++          +  L K     F +  L  E       +  L  N           + 
Sbjct: 578 -KIPHKDGPQARCANPLAKGYLQYFEKGKLTSE---YAYAKEALEMNAS----CSYWISA 629

Query: 280 RMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQN---LPRPSRSH 336
           R R +   V+  N +                 GAS     S      +    LP+     
Sbjct: 630 RDRITSQMVVYNNEVP----------------GASDLTSSSPEGPENKVGFILPQIIPMG 673

Query: 337 EELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQ 396
               + + +   + ++       +   ++S V A +G   V AD+   E   +A + G+ 
Sbjct: 674 TVTRRSVENTWLTASNAKKNR--VGSELKSMVRAPKGYCFVGADVDSEEL-WIASLVGDA 730

Query: 397 WKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMA 452
                             ++        T       R   KV      Y  G K    + 
Sbjct: 731 TFKLHGGNAIGFMTLEGTKAAGTDLHSRTAGILGISRNDAKVFNYGRIYGAGLKFASTLL 790

Query: 453 STTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQ 512
                +L         N   ++ +  +   + + E        + F+    E   +  R 
Sbjct: 791 RQFNPSLTESQTSKTANDLYQDTKGKKTNRKMLHERPFWRGGTESFVFNKLEDFAEQERP 850

Query: 513 KHS 515
           +  
Sbjct: 851 RTP 853


>gi|121607002|ref|YP_984331.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
 gi|120595971|gb|ABM39410.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
          Length = 203

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 65  DVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVLARSN---GLPSALKAVGEALKLS 119
           D  +VAHN+ F+R   +A  +         +ICTL+L+R          L ++ +   L 
Sbjct: 83  DAPLVAHNAAFDRKFWQAELDRAGLAAPQPFICTLLLSRRLYPQAPNHKLGSLVDFHGLP 142


>gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
 gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
           ATCC 27725]
          Length = 1446

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 10/78 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKA----CFNLDIPIHRWICTLVLARSNGLP 106
             +     E + ++ +  VAHN+ F+   ++         D      I TL +AR     
Sbjct: 486 EEVLPKFMEFVGDSTM--VAHNAPFDMGFIRRDVKKIMGYDYKPA-VIDTLQMARDLYPE 542

Query: 107 ---SALKAVGEALKLSSQ 121
                LK + + L LS  
Sbjct: 543 LKAYGLKNLNKVLGLSLD 560


>gi|156542518|ref|XP_001600478.1| PREDICTED: similar to dynein heavy chain [Nasonia vitripennis]
          Length = 4476

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/202 (9%), Positives = 49/202 (24%), Gaps = 13/202 (6%)

Query: 97   LVLARSNG-LPSALKAVGEALK---------LSSQKMEEGKELIARFCKGETHECLYDRN 146
            ++       +  +L+ +   LK         +     +   + I    +        D  
Sbjct: 1098 MLKQYLIDRVNKSLEDLSVFLKKAHGRFTNPVDKDDYDGLLDTIYYLKEVRDRTFEIDDM 1157

Query: 147  KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT 206
                +E  +L  +Y       T   + +L  L      +  L   +      +       
Sbjct: 1158 FEPLKETIQLLSDYNVEFSDET---YDKLTELPEFWNSIKKLAAQVKQVVAPLLTTQIEW 1214

Query: 207  LNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSN 266
            L +       +  + LE      V +  C         +   +           R     
Sbjct: 1215 LKKKFVWFDYRQKKLLEKFHGEEVFNPACENVYAKLDAINEKVEELLEELRELARTAEIF 1274

Query: 267  KKLTPQAIQVFNNRMRASRSAV 288
            ++  P+  ++   R        
Sbjct: 1275 EQPMPEFKELEQLRRELKMLKS 1296


>gi|154303273|ref|XP_001552044.1| hypothetical protein BC1G_09385 [Botryotinia fuckeliana B05.10]
 gi|150854948|gb|EDN30140.1| hypothetical protein BC1G_09385 [Botryotinia fuckeliana B05.10]
          Length = 553

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 18/176 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQV- 56
             L  D E          G  K      V L     ++      + L+  V+   +    
Sbjct: 257 KVLGFDIE-WKAEARAHHGPKK-----NVSLIQLATEERIGLFHIALFPQVNASELVAPT 310

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK+ +E+ +VT V      + T L+   N+D  +  +     L+  + L      + +  
Sbjct: 311 LKKIMEDPEVTKVGVAISADCTRLRTHLNID-SVSIFE----LSHLHRLVK--YTLSQEY 363

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            L ++++    + +         +    R     R        Y   D      ++
Sbjct: 364 DLINKRLVSLAKQVEEHLHLPLFKGGDVRASDWSRGLSIQQISYAASDSYAGYHLY 419


>gi|116070417|ref|ZP_01467686.1| Exonuclease [Synechococcus sp. BL107]
 gi|116065822|gb|EAU71579.1| Exonuclease [Synechococcus sp. BL107]
          Length = 285

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 28/140 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGF-------DDHPVELWDCVHDPV 52
           L ID ET        C +   A    V    +L    F          P+          
Sbjct: 57  LIIDTETTGLEPENHCCVEVGAILFDVQSRAVLAQQSFLLPAETNAAEPINRIP-AAVTR 115

Query: 53  MPQVLKEALE------NTDVTIVAHNSYFERTVLKACFNLDIP--IHRWICTLV-----L 99
           + Q  KEAL       +    +VAHN+ F+R         ++P     W+C++       
Sbjct: 116 LSQPWKEALLWFQNLLDAADVLVAHNAAFDRQWFGR---GELPAVTQPWLCSMEDMRWPA 172

Query: 100 ARSNGLPSALKAVGEALKLS 119
            R      +++ +  A  + 
Sbjct: 173 DRQLRSRPSVRDLALAYGVP 192


>gi|332829852|gb|EGK02494.1| hypothetical protein HMPREF9455_01451 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 164

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 23/136 (16%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVIL---FAFGFDDHPVELWD-------CVHDPVMP 54
            IDFET +    + C +        +I    ++      P              ++  + 
Sbjct: 7   AIDFETANEQMSSVCSVGIVIVRNGIICDRFYSL-IQPEPNYYIYGNSNVHGLTYEDTIN 65

Query: 55  QVLKE---ALENT---DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR---S 102
             +      L      ++ +VAHN  F+ T LK     + +D P +R+ CTL  +R    
Sbjct: 66  ADVFSKVWMLIEPLIGELPLVAHNKGFDETCLKAVFKTYRMDYPDYRFYCTLAASRRQLR 125

Query: 103 NGLPSALKAVGEALKL 118
           +     L  V E    
Sbjct: 126 HLSNHQLHTVAEDCGY 141


>gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 11/118 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP- 106
            V+ +  KE   +    +VAHN+ F+   +   +    +    +  + TL LAR      
Sbjct: 63  DVVLKRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFLYPHF 120

Query: 107 --SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               L  + +   +      +     E  A        +     +   H       GE
Sbjct: 121 KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLGWKLIKDAKEMHDIDYHDSLNDYMGE 178


>gi|262342235|gb|ACY54628.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAG+E R+L+          A                +   
Sbjct: 10  SRFRELFLPSPNQVMVGADLAGVELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|115625013|ref|XP_001204139.1| PREDICTED: similar to conserved hypothetical protein, partial
          [Strongylocentrotus purpuratus]
 gi|115634330|ref|XP_001186051.1| PREDICTED: similar to conserved hypothetical protein, partial
          [Strongylocentrotus purpuratus]
          Length = 94

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 25/90 (27%)

Query: 30 VILFAFGFDDHPVELWDCVHDPVMPQV---LKEALENTDVTIVA---------------- 70
          + L      D    L+D   +P + +    LK+ LE   +  V                 
Sbjct: 6  LTLVQISTWDGKAFLFDVFKNPQLLKGNSSLKQILERNSIKKVCRHPTSNLILSLYKNPD 65

Query: 71 ----HNSYFERTVLKACFNLDIPIHRWICT 96
              H+   +   L   F + +       T
Sbjct: 66 LPVIHDCKCDTHALHNEFGVILK--NVFDT 93


>gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
          Length = 758

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 481 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 540


>gi|307717410|gb|ADN88758.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717414|gb|ADN88760.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717416|gb|ADN88761.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
          Length = 231

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 11/118 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP- 106
            V+ Q  KE   +    +VAHN+ F+   +   +    +    +  + TL LAR      
Sbjct: 63  DVVLQRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFLYPHF 120

Query: 107 --SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               L  + +   +      +     E  A        +     +   H       GE
Sbjct: 121 KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDYHDSLNDYMGE 178


>gi|189463165|ref|ZP_03011950.1| hypothetical protein BACCOP_03876 [Bacteroides coprocola DSM 17136]
 gi|189430144|gb|EDU99128.1| hypothetical protein BACCOP_03876 [Bacteroides coprocola DSM 17136]
          Length = 163

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 25/138 (18%)

Query: 5   FIDFETRSPIDLTKCGICK-YAEDVCVI-----LFAFG---FDDHPVELWDCVHDPV--- 52
            IDFET +    + C +      D  ++     L       +     E+    H+     
Sbjct: 6   AIDFETANQCRSSVCSVGVVIVHDGMIVDRFYSLIQPTPNYYTHWTTEIHGLTHNDTDNA 65

Query: 53  --MPQVLKEALENTDVT---IVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
              P+V K+   N  +    +VAHNS F+   L+     + ++ P + + CTL  +R   
Sbjct: 66  PIFPEVWKQI--NPLIKGLPLVAHNSPFDEGCLRSVFKTYEMEYPEYPFYCTLKASRKLQ 123

Query: 105 ---LPSALKAVGEALKLS 119
                  L  V E    +
Sbjct: 124 PELPNHRLDTVAETCNFN 141


>gi|15927574|ref|NP_375107.1| ATP-dependent helicase [Staphylococcus aureus subsp. aureus N315]
 gi|29028621|ref|NP_803310.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12]
 gi|30043986|ref|NP_835521.1| probable ATP-dependent helicase [Staphylococcus phage phiN315]
 gi|87161004|ref|YP_494621.1| putative exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195288|ref|YP_500092.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|118725058|ref|YP_908794.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3]
 gi|151222134|ref|YP_001332956.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510224|ref|YP_001575883.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253315032|ref|ZP_04838245.1| putative exonuclease [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253729784|ref|ZP_04863949.1| DNA polymerase III epsilon subunit family exonuclease
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|258413674|ref|ZP_05681948.1| phage exonuclease [Staphylococcus aureus A9763]
 gi|258425109|ref|ZP_05687979.1| phage exonuclease [Staphylococcus aureus A9635]
 gi|258434316|ref|ZP_05688717.1| exonuclease family protein [Staphylococcus aureus A9299]
 gi|258447837|ref|ZP_05695972.1| phage exonuclease [Staphylococcus aureus A6224]
 gi|258452362|ref|ZP_05700372.1| ATP-dependent helicase [Staphylococcus aureus A5948]
 gi|282917349|ref|ZP_06325104.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282928799|ref|ZP_06336392.1| exodeoxyribonuclease [Staphylococcus aureus A10102]
 gi|283771164|ref|ZP_06344055.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|294849552|ref|ZP_06790294.1| exodeoxyribonuclease [Staphylococcus aureus A9754]
 gi|295428583|ref|ZP_06821210.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589943|ref|ZP_06948583.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|13701793|dbj|BAB43086.1| probable ATP-dependent helicase [Staphylococcus aureus subsp.
           aureus N315]
 gi|18920545|gb|AAL82285.1| Pol III-like ATP dependent helicase [Staphylococcus phage phi 12]
 gi|87126978|gb|ABD21492.1| putative exonuclease [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202846|gb|ABD30656.1| exonuclease family [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|104641823|gb|ABF73165.1| probable ATP-dependent helicase [Staphylococcus phage phiNM3]
 gi|150374934|dbj|BAF68194.1| phage exonuclease [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160369033|gb|ABX30004.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726519|gb|EES95248.1| DNA polymerase III epsilon subunit family exonuclease
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257839627|gb|EEV64097.1| phage exonuclease [Staphylococcus aureus A9763]
 gi|257844692|gb|EEV68736.1| phage exonuclease [Staphylococcus aureus A9635]
 gi|257849264|gb|EEV73245.1| exonuclease family protein [Staphylococcus aureus A9299]
 gi|257858934|gb|EEV81802.1| phage exonuclease [Staphylococcus aureus A6224]
 gi|257859949|gb|EEV82787.1| ATP-dependent helicase [Staphylococcus aureus A5948]
 gi|269941473|emb|CBI49870.1| putative phage exonuclease [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282318976|gb|EFB49331.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus D139]
 gi|282589534|gb|EFB94622.1| exodeoxyribonuclease [Staphylococcus aureus A10102]
 gi|283459758|gb|EFC06849.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus H19]
 gi|285817684|gb|ADC38171.1| Pol III-like ATP dependent helicase, phage associated
           [Staphylococcus phage phiN315]
 gi|294823689|gb|EFG40116.1| exodeoxyribonuclease [Staphylococcus aureus A9754]
 gi|295127565|gb|EFG57204.1| exodeoxyribonuclease [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577071|gb|EFH95785.1| exonuclease [Staphylococcus aureus subsp. aureus MN8]
 gi|312830370|emb|CBX35212.1| exonuclease family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315196784|gb|EFU27129.1| possible exodeoxyribonuclease [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320143661|gb|EFW35439.1| exonuclease [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329724440|gb|EGG60950.1| exonuclease [Staphylococcus aureus subsp. aureus 21189]
          Length = 310

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL--ARSNGL 105
           P + Q +   L      I+AHN+ F+ +VLK     ++L +P   ++ ++ +  +     
Sbjct: 71  PDIYQEILYLL-KESHLIIAHNALFDISVLKNTNNYYDLPVPNFMYVDSINIFRSFHAIS 129

Query: 106 PSALKAVGEALKLSSQKMEEGK 127
              L+ +     +  +K+   K
Sbjct: 130 SFKLENLCSLYDIDKEKLHSAK 151


>gi|315604561|ref|ZP_07879624.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313573|gb|EFU61627.1| DNA polymerase III [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 525

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 11/77 (14%)

Query: 52  VMPQVLKEA--LENTD-VTIVAHNSYFERTVLKACFN---LDIPIHRWICTLVLARSNGL 105
            +          E  D V +VAHN+ F+   L+       L  P  R + TL LAR    
Sbjct: 76  TVLDRFLTWAGFEAKDPVVLVAHNAPFDIGFLRRAAAACSLPWPRVRVVDTLALARLALP 135

Query: 106 -----PSALKAVGEALK 117
                   L  V     
Sbjct: 136 RPIVRNHKLATVASYFG 152


>gi|311739578|ref|ZP_07713413.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305394|gb|EFQ81462.1| ribonuclease D [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 414

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 38/162 (23%), Gaps = 33/162 (20%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            ID E        +    +Y +   V+          +      H   +   L   L   
Sbjct: 37  AIDTE--------RASGYRYDDRAFVVQIR-RRGAGTMLFAPEGHREELTAALAPVLN-- 85

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
               + H ++ +   L     L +       T + AR  G     L  +   L       
Sbjct: 86  GAEWIIHAAHSDLPCLGW---LGLFPGSIFDTELAARLAGFERPNLGTMVGEL------- 135

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                      + E      D +     +       Y   DV
Sbjct: 136 --------FDVELEKGYGDADWS---TPQLSEELKAYAALDV 166


>gi|237731882|ref|ZP_04562363.1| exodeoxyribonuclease X [Citrobacter sp. 30_2]
 gi|226907421|gb|EEH93339.1| exodeoxyribonuclease X [Citrobacter sp. 30_2]
          Length = 226

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 11  IDTETCGLQGGIVEIASVDVVDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 66

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 67  KPWIEDVIPQYYGSEWYVAHNASFDRRVL------PDMPGEWICTMKLSRRLWPGIKYSN 120

Query: 112 VGEA 115
           +   
Sbjct: 121 MALY 124


>gi|188533646|ref|YP_001907443.1| exodeoxyribonuclease X [Erwinia tasmaniensis Et1/99]
 gi|188028688|emb|CAO96550.1| DNA exonuclease X [Erwinia tasmaniensis Et1/99]
          Length = 221

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GLPSALKAVGEALKLSSQKMEEG 126
           VAHN+ F+R +L            WICT+ LAR    GL    +A+ +AL+L      E 
Sbjct: 78  VAHNASFDRRMLPEMNG------EWICTMTLARRLWPGLKYGNEALRQALRLDVSPPPEL 131

Query: 127 KE 128
             
Sbjct: 132 HA 133


>gi|301596826|ref|ZP_07241834.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB059]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 28/181 (15%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDD-HPV 42
             L +D ET        D              LT   I  Y      +  +         
Sbjct: 211 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVQVHGITDE 270

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP----IHRWICTL 97
            L D      +   L E L      I+AHN+ F+   L      + +P    +     TL
Sbjct: 271 FLVDKPKYAEIADTLFEYL--KGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTDTL 328

Query: 98  VLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            LA++       +L A+    ++ ++       L+      + +  +         +A  
Sbjct: 329 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 388

Query: 156 L 156
            
Sbjct: 389 Q 389


>gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1554

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 29/141 (20%)

Query: 4   LFIDFETRS----PIDLTKCGICKYAEDVCV-----------ILFAFGFDD----HPVEL 44
           +  D ET         + + G  K   D  +           +   F  +     +   +
Sbjct: 532 VVFDIETTGFSPKKNKIIEIGAVKVV-DGKITDRFSSFVNPDVPIPFDIEKLTGINDSMV 590

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                  V+     + + +    +VAHN+ F+   +        L       + T+ +AR
Sbjct: 591 LPYPKIDVILPQFLDFVGDA--VLVAHNASFDVGFISHFAEEQGLHFNPT-VLDTVTIAR 647

Query: 102 SNGLPSA---LKAVGEALKLS 119
                     L  V +AL +S
Sbjct: 648 LLLPNLNRFKLDTVAKALNIS 668


>gi|222099149|ref|YP_002533717.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
           4359]
 gi|281411717|ref|YP_003345796.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
           RKU-10]
 gi|221571539|gb|ACM22351.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
           4359]
 gi|281372820|gb|ADA66382.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
           RKU-10]
          Length = 186

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLAR-SNGLP 106
            + +  ++ +      +V HN+ F+ T L    K   N  +  + +I TL +++   G P
Sbjct: 78  TVYERFRDYV--KGTVLVFHNANFDLTFLDMMAKETRNFPL-TNAYIDTLDISQEVFGRP 134

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            +LK + E L +   + +     ++             +    H+  
Sbjct: 135 HSLKWLCEKLGI---RDKIEHRALSDALVTAKVFVRLVKLLGEHKVD 178


>gi|52841614|ref|YP_095413.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628725|gb|AAU27466.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 251

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 34/150 (22%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--------- 51
           M  + +D ET     +      +  E  C+ L           ++               
Sbjct: 19  MRQVILDTETTG---IGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVH 75

Query: 52  ----VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLD---IPIHR 92
                  Q  K   ++             ++ HN+ F+   L         +       R
Sbjct: 76  GISTEFLQD-KPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCR 134

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL+LAR        +L A+ +  ++  
Sbjct: 135 ILDTLILAREKHPGQRNSLDALCKRYEIDH 164


>gi|88857806|ref|ZP_01132448.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas tunicata D2]
 gi|88819423|gb|EAR29236.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas tunicata D2]
          Length = 252

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 33/151 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL---- 57
             + +D ET       K G  +  E  CV L    F  +   ++      +  + +    
Sbjct: 19  RQIVLDTETTGIDP--KLG-HRIIEIGCVELINRRFTGNNFHVYINPERDIEDEAIDVHG 75

Query: 58  --KEALENT---------------DVTIVAHNSYFERTV-------LKACFNLDIPIHRW 93
              + L +                   +V HN+ F+          L+  +       + 
Sbjct: 76  ITNQFLRDKPKFHHIAQEFFDYIQGAELVIHNAAFDVGFMDSEFQRLRTGYPKTAQFCQV 135

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQK 122
           + TL +AR         L A+     + + K
Sbjct: 136 LDTLKMARELHPGQKNNLDALCRRYNIDNGK 166


>gi|325286473|ref|YP_004262263.1| 3'-5' exonuclease, PolB [Cellulophaga lytica DSM 7489]
 gi|324321927|gb|ADY29392.1| 3'-5' exonuclease, PolB [Cellulophaga lytica DSM 7489]
          Length = 237

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 55/183 (30%), Gaps = 41/183 (22%)

Query: 21  ICKYAEDVCVILFAFGFDDHPVEL----WDCVHDPV--MPQVLKEAL----ENTDVTIVA 70
              +AE   ++  + G+ +   ++              + +  K  L     +    + A
Sbjct: 56  AGIWAEFGKIVCISVGYFNTKGDVRNFRVTTFFGEEDILLKEFKNLLTTHFASPKYVLCA 115

Query: 71  HNSY-FERTVLKACF---NLDIPIH-----------RWICTLVLARSNGLPS--ALKAVG 113
           HN   F+   +        +D+P               I T+ L +        +LK + 
Sbjct: 116 HNGKEFDFPYIARRMVINRIDLPPKLNLFGKKPWEVPHIDTMELWKFGDFKHYTSLKLMT 175

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             L + S K              E  +    R+            +YC+ DV    ++F 
Sbjct: 176 NVLGVPSPK--------------EDIDGSMVRDVFYIDNNIDRIVKYCELDVIAIAQVFL 221

Query: 174 RLE 176
           RL 
Sbjct: 222 RLR 224


>gi|165976032|ref|YP_001651625.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|303249665|ref|ZP_07335870.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307245476|ref|ZP_07527563.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307252170|ref|ZP_07534068.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307254430|ref|ZP_07536267.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258890|ref|ZP_07540621.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|165876133|gb|ABY69181.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302651477|gb|EFL81628.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306853535|gb|EFM85753.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306860314|gb|EFM92329.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306862571|gb|EFM94528.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866914|gb|EFM98771.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 371

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 84/310 (27%), Gaps = 50/310 (16%)

Query: 4   LFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           + +D E   TRS     K G+ +             FD   V L D  +           
Sbjct: 29  VALDTEFIRTRSYYP--KLGLIQL------------FDGDTVSLID-PNPISDFSPFIGL 73

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEALK 117
           L   +V  V H    +  V +  F           T ++A   G   +L   K V   L 
Sbjct: 74  LTCQNVVKVLHACSEDLEVFQHLF--KQLPTPLADTQIMAGFAGGGISLGFAKLVAHYLN 131

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K     + +AR                          +Y   DV     +++RL  
Sbjct: 132 VELDKGASRTDWLARPLT-------------------EEQLQYAAADVWYLLPVYQRLVS 172

Query: 178 LSSKEQELWYLDQTIND----RGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSS 233
                +    ++Q        R    ++A A+           +    L+ L    +  +
Sbjct: 173 DLDATRWQNAVEQECRYLLSKRESVANIAQAYKDISNAWRLEPQQLAILKVLAKWRIEEA 232

Query: 234 RCLEKLKTWLFLETGL-HLEDLTETTCQRVLSSNKKLTPQA---IQVFNNRMRASRSAVL 289
              +    ++  E  L  +  L      ++L        +      +       +     
Sbjct: 233 EKRDLALNFVVKENCLFEIAKLQPKHTSQLLEFMHPNEVRIHGKKLLMLVEQGLAVLPEN 292

Query: 290 KLNTLVEAMN 299
               ++  ++
Sbjct: 293 YPEKIIRLVD 302


>gi|297521906|ref|ZP_06940292.1| DNA polymerase II [Escherichia coli OP50]
          Length = 512

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|189425539|ref|YP_001952716.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
 gi|189421798|gb|ACD96196.1| DNA-directed DNA polymerase [Geobacter lovleyi SZ]
          Length = 168

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 23/138 (16%)

Query: 2   ATLFIDFETRSPIDLTKCG-----ICKYAEDVCVI---------LFAFGFDDHPVELWD- 46
             + +D ET     +   G          E+  +               +  + V     
Sbjct: 3   RVIVVDTETTGL-SVRNQGRVIEIGAVAVENGQITAELATLINSGTPISYGAYRVHGISE 61

Query: 47  -CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
             +     PQ +         +  +VAHN+ F+R  +        + +  + W CT+ L+
Sbjct: 62  QMLAGRPTPQEVWPWFLEFAGNSPLVAHNAAFDRAFINHELHLLGMSLA-NPWHCTVRLS 120

Query: 101 RSNGLPSALKAVGEALKL 118
           R          +    K 
Sbjct: 121 RRKLPRLMNHKLETVYKH 138


>gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862]
          Length = 1440

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 50  DPVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL 105
           +  + +  +E   +    +V HN  F+   +           I  +  I TL+LAR    
Sbjct: 489 EKQVFEEFREFYGDA--VLVGHNVTFDMGFMQEGYARHQLAPI-TNPVIDTLILARFLYP 545

Query: 106 ---PSALKAVGEALKL 118
                 L  + +   +
Sbjct: 546 NMRSYRLNTLAKHFGI 561


>gi|332161539|ref|YP_004298116.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318605521|emb|CBY27019.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325665769|gb|ADZ42413.1| ribonuclease D [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 373

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 59/217 (27%), Gaps = 48/217 (22%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV- 56
            + +D E     T                   + L    +D   + L D +    + Q  
Sbjct: 24  HVALDTEFVRTRTYY---------------PQLGLIQL-YDGEKLSLIDPL---PITQWQ 64

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +E L++  V    H    +  V    F  ++     I T VLA  +G   +       
Sbjct: 65  PFRELLQDVSVVKYLHAGSEDLEVFLNAF--ELMPTPMIDTQVLAAFSGRSLS------- 115

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                     G  ++    +G   +    R     R       +Y   DV     +  +L
Sbjct: 116 ---------CGFAMLVNELEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLASKL 166

Query: 176 EPLSS----KEQELWYLDQTINDRGYCVDVALAHTLN 208
              +      +      +     R   +D  LA+   
Sbjct: 167 VEATEAAGRMDAAKDECELLCRRRSETLDPELAYREI 203


>gi|262404569|ref|ZP_06081124.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262349601|gb|EEY98739.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 247

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 11/90 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIH---RWICTLVLARSN 103
             + +   + +      +VAHN+ F+               I      +   TL +A+  
Sbjct: 85  KQVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGSVIKTTDFCKVTDTLAMAKRI 142

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  L  + E   + +        L+ 
Sbjct: 143 FPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|261344774|ref|ZP_05972418.1| hypothetical protein PROVRUST_06038 [Providencia rustigianii DSM
           4541]
 gi|282567218|gb|EFB72753.1| DNA polymerase II [Providencia rustigianii DSM 4541]
          Length = 783

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-----ELWDCVHDPVMPQVLK 58
           + +D ET    +L   G+    ++   ++F  G D  P       L      P + + L 
Sbjct: 155 VSLDIETSQHGELYSIGLSGCNDN---VVFMLGPDQGPALNTDHRLVYVTSRPQLLEKLN 211

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR 92
           E ++  + D   +  N   F+  VL+     + + + + R
Sbjct: 212 EWIQHYDPDAI-IGWNLIQFDLQVLQKHAERYGIPLLLGR 250


>gi|121605184|ref|YP_982513.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans
           CJ2]
 gi|120594153|gb|ABM37592.1| DNA polymerase III, epsilon subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 240

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 42/165 (25%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA-------EDV-CVILFA 34
           M  + +D ET                       LT      Y        ED   V   +
Sbjct: 1   MRQIVLDTETTGLSAENGDRIIEIGCVELVRRKLTGNNKHFYLNPGRNSHEDALKVHGIS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL------DI 88
               +    L D      +   L + L+  ++ I  HN+ F+ + L     +        
Sbjct: 61  ----NE--FLKDKPKFSAVVDELLDYLQGAEIII--HNAPFDVSFLNKELEIIGREPLMH 112

Query: 89  PIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            + +   +L++A+        +L A+ + L++ +        L+ 
Sbjct: 113 CVAKVTDSLMMAKEMFPGKRNSLNALCDRLEVDNSGRTLHGALLD 157


>gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
 gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
          Length = 1438

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 24/144 (16%)

Query: 4   LFIDFETRS----PIDLTKCGICKYAEDVCVILFA--FGFDDHPVELW---------DCV 48
           +  D ET        D+T+ G  K      +         +    +           D  
Sbjct: 398 ISFDLETTGLSVMDDDITEFGAVKIKNGQEIGRLQSLIKPNKRISQKITNLTHITNEDVK 457

Query: 49  HDPVMPQVLKEALE-NTDVTIVAHNSYFERT----VLKACFNLDIPIHRWICTLVLARSN 103
             P + + + + LE   D  IVAHN+ F+      +L+      +  +  I +L LA   
Sbjct: 458 DAPTIQEYIPKILEFFGDDVIVAHNATFDVGFLNEILQRHGYEKLK-NPAIDSLALAWKL 516

Query: 104 GL---PSALKAVGEALKLSSQKME 124
                   L  V    +++    +
Sbjct: 517 LPQLKGFRLGNVARYYRIAYDGDD 540


>gi|300715435|ref|YP_003740238.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
 gi|299061271|emb|CAX58380.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
          Length = 244

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 8   RQIVLDTETTGMNMI-----GVHYEGHRIIEIG-AVEVINRRLTGNNYHVYLKPDRLVDP 61

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACF---NLDI 88
                  + D  +    K    +             +V HN+ F+   +   F     +I
Sbjct: 62  EAFGVHGIADEFLAD--KPTFADIADGFLEYIDGAELVIHNASFDIGFMDYEFAKLGRNI 119

Query: 89  PIH----RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P      R   +L +AR        +L A+    ++ + K      L+ 
Sbjct: 120 PKTETFCRITDSLAMARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLD 168


>gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
 gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
          Length = 474

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP--- 106
           +   +   L++     VAHN+ F+   LK   A    +      +CT+ L+R+       
Sbjct: 75  VADTVAALLDD--CVFVAHNARFDYGFLKTAYAALGREFD-APVLCTVKLSRALYPDHHR 131

Query: 107 SALKAVGEALKL 118
             L A+ E   L
Sbjct: 132 HGLDAIIERHGL 143


>gi|291335384|gb|ADD94998.1| DNA polymerase [uncultured phage MedDCM-OCT-S04-C24]
          Length = 217

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 67/277 (24%), Gaps = 101/277 (36%)

Query: 376 LVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVM 435
           +V ADL+GIE R+LA          A   G            +   A      R   K +
Sbjct: 1   MVGADLSGIELRMLAHYL-------ARYDGGRYAKLLLEDDIHQINADKIGISRRQVKTV 53

Query: 436 ELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIE 495
             A  Y  G +                                             H+ +
Sbjct: 54  TYAFLYGAGDEKI------------------------------------------GHSYD 71

Query: 496 DLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDK 555
                TA ++  K  R  +    +  ++L +A +Q  E G                    
Sbjct: 72  PQLSTTAAKKKGKEIRAAYVDAVDGLDDLLKAIKQAAERG-------------------- 111

Query: 556 NNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRDILAEGMM 615
               +    GR +                           K     +Q+ +  I    M+
Sbjct: 112 ---FIRSIDGRKVNVDSPH---------------------KALNYCLQSGAGVIAKRWMV 147

Query: 616 NATK---AGYDI----VLTVHDEIVCETPDTDEFNAS 645
              +       I    +  +HDE+  E       + S
Sbjct: 148 -INQETMREAQICASQLGFIHDELQFECAPEHVGDLS 183


>gi|260581298|ref|ZP_05849115.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
 gi|260092047|gb|EEW75993.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
          Length = 256

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALEN-TDVTIVA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +  +   VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ + L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|300361318|ref|ZP_07057495.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
 gi|300353937|gb|EFJ69808.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
          Length = 177

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI-----LF--AFGFDDHPVELW-----DC 47
           M    +DFET +    + C +      +  ++     +      FD   + +      D 
Sbjct: 1   MNFTAMDFETANSHPESACSLALVMVRNNEIVDRFYTVINPQMPFDGRNIRVHGITAEDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHN+ F+  V++     +N+  P +  I TL  +++
Sbjct: 61  KNAPTMAEVWPKIKKLYQPGMLVAAHNARFDCRVMEKSLARYNIPAPHYFAIDTLATSKA 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V EAL ++
Sbjct: 121 FEPDLPNHKLDTVSEALNIN 140


>gi|224417820|ref|ZP_03655826.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|253827160|ref|ZP_04870045.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|313141361|ref|ZP_07803554.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|253510566|gb|EES89225.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
 gi|313130392|gb|EFR48009.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
           98-5491]
          Length = 247

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 52/178 (29%), Gaps = 20/178 (11%)

Query: 2   ATLFIDFETRSPIDLTK----CGICKYAEDVCVILF-AFGFDDHPVELWDCVHD--PVMP 54
               +D ET             G   Y        F +F F +   E    +      M 
Sbjct: 70  RFCIVDIETNGHNPFVHQPIEIGAIVYQGGKICESFHSFVFCEEIPEYITKLTGITSPML 129

Query: 55  QV---LKEALEN-----TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR-- 101
           +    + + LE+     +D   VAHN  F+   L      +      +  +CT+ LA+  
Sbjct: 130 EKAPKIHQVLESFKLFLSDCVFVAHNVNFDYQFLSNALYHYGFGYLYNPRLCTIKLAQKT 189

Query: 102 SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                 +L+ + E L +    +    E      +      +    K         F E
Sbjct: 190 FTSPRYSLEFLNEFLGIRHSPLHRALEDSKVASEVFKKSLMGLDKKIYTSHDLIKFAE 247


>gi|190345004|gb|EDK36807.2| hypothetical protein PGUG_00905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1209

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 53/215 (24%), Gaps = 21/215 (9%)

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
            G A  +  +        +  +   +            N+ R                 +
Sbjct: 712 GGTALGWMTLEGDKNEGTDLHSKTAEILGISRNDAKVFNYGRIYGAGVKFATTLLKQFNS 771

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                           + L            + GK+    +                 + 
Sbjct: 772 ELTDA-----------AALKVAQDLYARTKGQTGKSKFLDRPMYHGGTESVMFNALEAIA 820

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                      +G   +  +  +++   +  Y        +Q+   D   +L   M   +
Sbjct: 821 YQDDPR--TPVLGAAIT--DALSKKNLNKNNYMTSRINWAIQSSGVDYLHLLLISMEYLI 876

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
              +    ++LTVHDEI     +  ++  ++L  +
Sbjct: 877 ARYQVDARLILTVHDEIRYMVKEDQKYKLALLLQV 911


>gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1]
 gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type
           [Lactobacillus plantarum WCFS1]
 gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 1437

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 66/287 (22%), Gaps = 48/287 (16%)

Query: 3   TLFIDFETR------------SPIDLTKCGICKYAEDVCVILFAFG--FDDHPVELWDCV 48
            +  D ET             S + + K  +    E+     F       +      D V
Sbjct: 422 YVIFDTETTGLSAIYDRVIELSAVKMVKGNVVDQFEEFIDPGFHLSETTTNLTSITDDMV 481

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARS 102
                 + + +       D  +V HN  F+   +           I  +  I TL LAR 
Sbjct: 482 RGSKSEEEVFKLFREFYGDAIVVGHNVTFDIGFMNTGYARHHMGPI-TNPIIDTLTLARW 540

Query: 103 NGL---PSALKAVGEALKLS--------SQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                    L  + +   ++              G  L   F K          +   + 
Sbjct: 541 LYPNLRGYRLNTLAKKFNVNLEHHHRAIYDAETTGH-LNHLFLKDAEDRYQVQFHDQLND 599

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL-DQTINDRGYCVDVALAHTLN-- 208
                           T  ++ + +        +  L +     R   V  ++ +     
Sbjct: 600 HMNENAAYRHARPFHAT--LYAQTQAGLKNLFRIISLSNVEYYYRVPRVPRSVLNKYRDG 657

Query: 209 ----------QIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
                     ++      K  +E               +   + L  
Sbjct: 658 ILVGSACSSGEVFTAMMQKGKEEARQKAGYYDFLEVQPKPAYSALIE 704


>gi|322388190|ref|ZP_08061794.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus infantis ATCC 700779]
 gi|321140862|gb|EFX36363.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus infantis ATCC 700779]
          Length = 816

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51
             + +D E   T S   + + GI    ED  ++   +  D +P E  D            
Sbjct: 7   RYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIVE-QYATDVNPHERLDSHIKELTGLTDK 64

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                     + + + E +++     VAHN  F+  +L         ++   R   T+ L
Sbjct: 65  RLAKAPEFSQVAEKIFELVKDG--IFVAHNVQFDANLLAEFLFFEGYELRTPRI-DTVEL 121

Query: 100 ARSNGL---PSALKAVGEALKLS 119
           A+          L  + + L + 
Sbjct: 122 AQIFYPQLEKYNLGILCQELGIP 144


>gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
          Length = 762

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D+ +  HN  F+   L       N+DI     + TL ++R          L ++ +   +
Sbjct: 485 DLPLCGHNVQFDIGFLNAALRRCNMDIITQPVVDTLEVSRLLHPEQTRHTLDSLAKKYNV 544


>gi|291301852|ref|YP_003513130.1| DNA polymerase III subunit epsilon [Stackebrandtia nassauensis DSM
           44728]
 gi|290571072|gb|ADD44037.1| DNA polymerase III, epsilon subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 578

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 28/138 (20%)

Query: 6   IDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-------------CV 48
           +D ET         +T+ G  K      V+   +    +P E  D               
Sbjct: 29  VDLETTGVASDACSITEIGAVK-VRGGEVLG-EYATLVNPGEAIDARISALTGITDAMVA 86

Query: 49  HDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN- 103
             P + +VL   LE       VAHN+ F+   L++      L  P  + + T+VLAR   
Sbjct: 87  DAPAIEEVLPSFLEFARGAVWVAHNAPFDVGFLRSACAQAELPWPRPQVVDTVVLARRLV 146

Query: 104 ----GLPSALKAVGEALK 117
                    L  +     
Sbjct: 147 DRSEVPNKRLSTLARYFG 164


>gi|15802257|ref|NP_288281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 EDL933]
 gi|15831808|ref|NP_310581.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. Sakai]
 gi|168762363|ref|ZP_02787370.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501]
 gi|168788263|ref|ZP_02813270.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869]
 gi|217328801|ref|ZP_03444882.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588]
 gi|261227657|ref|ZP_05941938.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258177|ref|ZP_05950710.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. FRIK966]
 gi|12515897|gb|AAG56834.1|AE005407_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13362022|dbj|BAB35977.1| exonuclease X [Escherichia coli O157:H7 str. Sakai]
 gi|189367397|gb|EDU85813.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501]
 gi|189372044|gb|EDU90460.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869]
 gi|209767640|gb|ACI82132.1| exonuclease X [Escherichia coli]
 gi|217318148|gb|EEC26575.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588]
 gi|320188544|gb|EFW63206.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC1212]
 gi|326342223|gb|EGD66004.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1044]
          Length = 220

 Score = 41.6 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|27365234|ref|NP_760762.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|37680713|ref|NP_935322.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|320155618|ref|YP_004187997.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27361381|gb|AAO10289.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus CMCP6]
 gi|37199462|dbj|BAC95293.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
 gi|319930930|gb|ADV85794.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 11/98 (11%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIH------RWIC 95
            L D      + Q   E +      +VAHN+ F+   +   F  LD  I       +   
Sbjct: 77  FLVDKPEYRQVHQEFLEFI--KGAELVAHNAPFDVGFMDYEFGKLDAAIGKTDDYCKVTD 134

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           TL +A+         L  + E   + +        L+ 
Sbjct: 135 TLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLD 172


>gi|119384625|ref|YP_915681.1| ribonuclease D [Paracoccus denitrificans PD1222]
 gi|119374392|gb|ABL69985.1| ribonuclease D [Paracoccus denitrificans PD1222]
          Length = 401

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 56/206 (27%), Gaps = 35/206 (16%)

Query: 3   TLFIDFE-----TR-SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
            + +D E     T  S + L +  +   +        +   D         V    + + 
Sbjct: 34  YVTLDTEFLRERTYYSKLCLIQAALPPASATKAAGGLSVLID-------PLVEGLSL-EP 85

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           L +   +     V H +  +  +        +       T + A   G        GE +
Sbjct: 86  LYDLFRHKPTVKVFHAARQDLEIFFHDAG--VMPDPLFDTQIAAMVCGF-------GEQV 136

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     + L+ +  +    +     +  +   +      Y   DVT  R I++ L 
Sbjct: 137 GY--------ETLVKKIARQPLDKSSRFTDWSHRPLSDAQAA-YALADVTHLRAIYEFLS 187

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVA 202
               K     +L     +    ++  
Sbjct: 188 AQLDKTGRAPWL---AEEVAVLLNPE 210


>gi|322392254|ref|ZP_08065715.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus peroris ATCC 700780]
 gi|321144789|gb|EFX40189.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus peroris ATCC 700780]
          Length = 823

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51
             + +D E   T S   + + GI    ED  ++   +  D +P E  D            
Sbjct: 7   RYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIVE-QYATDVNPHEHLDSHIKELTGLTDK 64

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                     +   + E +++     VAHN  F+  +L         ++   R   T+ L
Sbjct: 65  RLAKAPEFSQVAGKIFELVKDG--IFVAHNVQFDANLLAEFLFFEGYELRTPRI-DTVEL 121

Query: 100 ARSNGL---PSALKAVGEALKLS 119
           A+          L  + + L + 
Sbjct: 122 AQVFYPQLEKYNLGILCQELGIP 144


>gi|257125974|ref|YP_003164088.1| exonuclease RNase T and DNA polymerase III [Leptotrichia buccalis
           C-1013-b]
 gi|257049913|gb|ACV39097.1| Exonuclease RNase T and DNA polymerase III [Leptotrichia buccalis
           C-1013-b]
          Length = 212

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 30/121 (24%), Gaps = 24/121 (19%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV----LA 100
           +       M               VAHN  F+R+       +D P+     T++    + 
Sbjct: 96  YPLTFKEDMDNFF--LFCQDTSHFVAHNIKFDRSF------VDFPLQNQFDTMLTNIDIV 147

Query: 101 RSNGLPSA------LKAVGEALKLS------SQKMEEGKELIARFCKGETHECLYDRNKP 148
           + NG          L        +            +   +   F K   H+    R   
Sbjct: 148 KVNGSSYGNYKWPKLMECANYYNIPFEESQLHGSYYDVLIMFRIFFKMMKHKTGNKRILE 207

Query: 149 N 149
            
Sbjct: 208 F 208


>gi|213585209|ref|ZP_03367035.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 136

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 13/61 (21%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP-VMPQVL--KEAL 61
             D ET S  ++             ++  +F  +          HD    P  +  + AL
Sbjct: 84  AFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRAL 133

Query: 62  E 62
           E
Sbjct: 134 E 134


>gi|212635110|ref|YP_002311635.1| DNA polymerase III subunit epsilon [Shewanella piezotolerans WP3]
 gi|212556594|gb|ACJ29048.1| DNA polymerase III, epsilon subunit [Shewanella piezotolerans WP3]
          Length = 242

 Score = 41.6 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-------WIC 95
            + D      + Q   E ++  ++  VAHN+ F+ + +   F++  PI          + 
Sbjct: 75  FVADKPKFHQIAQSFIEFIDGAEI--VAHNANFDVSFMDHEFSMLQPIGPKTAEICQILD 132

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSS 120
           +L +A+         L A+ +   + +
Sbjct: 133 SLAIAKYLHPGQKNNLDALCKRYGIDN 159


>gi|315640656|ref|ZP_07895761.1| DNA polymerase III [Enterococcus italicus DSM 15952]
 gi|315483595|gb|EFU74086.1| DNA polymerase III [Enterococcus italicus DSM 15952]
          Length = 911

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 27/146 (18%)

Query: 1   MATLFI-DFETRSPID----LTKCGICKYAEDVCVIL-FAFGFDDHPV---ELWDCVHDP 51
           M T  I D ET         + + G C + E+  ++  FA           ++    H  
Sbjct: 1   MTTYAIVDIETTGTNPKEDRIFQFG-CVFVENGEIVGRFATMIHPGRSISPQIQHLTHTT 59

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLV 98
                     E+         +    VAHN +F+       L+ C    + +     T+ 
Sbjct: 60  NKDVRHSPYFEDVAPTIYELLSGTVFVAHNIHFDYRFLNAELERCGCERLQLKGI-DTVE 118

Query: 99  LARSNGL---PSALKAVGEALKLSSQ 121
           LA+          L  + E+L L+ +
Sbjct: 119 LAQILFPTEISFRLSDLSESLGLAHE 144


>gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 315

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 26/161 (16%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                +     L+ +   L +         + I      + 
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167


>gi|237752604|ref|ZP_04583084.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376093|gb|EEO26184.1| DNA polymerase III subunit epsilon [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 267

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 50/177 (28%), Gaps = 25/177 (14%)

Query: 6   IDFETRSPIDLTKCGICK---YAEDVCVI-LF-AFGFDDHPVELW------------DCV 48
           +D ET          I        +  V+  F +F F+    E              +  
Sbjct: 74  VDIETNGHNPCVHTPIEIGTLKVRNGKVVDCFESFVFNAEIPEYITKITGINAQMLENAP 133

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICT-LVLARSNG 104
               + +  K  L ++    VAHN  F+   L             +  +CT  +  R   
Sbjct: 134 KLASVLEKFKLFLGDS--IFVAHNVDFDYNFLSQSLEKCGFGYLYNPRLCTIKLAQRVLQ 191

Query: 105 LP-SALKAVGEALKLSSQKMEEGKELIARFCKGETHE-CLYDRNKPNHREAWRLFGE 159
            P  +L  + E L ++ Q +    +      +          +N    ++       
Sbjct: 192 APRYSLGFLNEFLGINHQNLHRALQDSKTALEIFKICLKKIPKNLYTSKDLLEFVKN 248


>gi|146423193|ref|XP_001487528.1| hypothetical protein PGUG_00905 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1209

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 53/215 (24%), Gaps = 21/215 (9%)

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
            G A  +  +        +  +   +            N+ R                 +
Sbjct: 712 GGTALGWMTLEGDKNEGTDLHSKTAEILGILRNDAKVFNYGRIYGAGVKFATTLLKQFNS 771

Query: 502 ACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILM 561
                           + L            + GK+    +                 + 
Sbjct: 772 ELTDA-----------AALKVAQDLYARTKGQTGKSKFLDRPMYHGGTESVMFNALEAIA 820

Query: 562 LPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---M 615
                      +G   +  +  +++   +  Y        +Q+   D   +L   M   +
Sbjct: 821 YQDDPR--TPVLGAAIT--DALSKKNLNKNNYMTSRINWAIQSSGVDYLHLLLISMEYLI 876

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHL 650
              +    ++LTVHDEI     +  ++  ++L  +
Sbjct: 877 ARYQVDARLILTVHDEIRYMVKEDQKYKLALLLQV 911


>gi|21673865|ref|NP_661930.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS]
 gi|21647000|gb|AAM72272.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS]
          Length = 232

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 27/144 (18%)

Query: 2   ATLFIDFETRSPIDLTK------------CGICKYAEDVCVILFAFGFDDHPVELW---- 45
             +  D ET S  DL K                  A+   V+L                 
Sbjct: 44  RFVIFDTET-SGFDLVKDRILSIGAVSMKGSTIDIADSFEVLLRQEAIGGKDAVSVHGIL 102

Query: 46  --DCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERT----VLKACFNLDIPIHRWICTLV 98
             D        + +   L+   +  IVAH++ F+      VL   + + + ++  + T  
Sbjct: 103 KRDLTQGMEEGEAVCRFLDYLGNGVIVAHHADFDIAMVNRVLSQRYGIKL-LNEALDTAS 161

Query: 99  LARSN--GLPSALKAVGEALKLSS 120
            A+    G    L       +L +
Sbjct: 162 FAKRLEKGPYYNLAHKSGEYRLDN 185


>gi|24372736|ref|NP_716778.1| exonuclease, putative [Shewanella oneidensis MR-1]
 gi|24346805|gb|AAN54223.1|AE015559_7 exonuclease, putative [Shewanella oneidensis MR-1]
          Length = 261

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 50/188 (26%), Gaps = 47/188 (25%)

Query: 3   TLFIDFETR-----------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP 51
            L  D ETR           S + L       Y     V+  AF                
Sbjct: 80  VLGFDTETRASFEPSVQHPLSLVQLATADT-CYLFQQAVLGDAFA--------------- 123

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
                LK  LEN  +  V      +   LK  +N+ +                L  A+  
Sbjct: 124 ----QLKPLLENEQILKVGIGLRGDGQALKRDWNILVSPR-----------LDLNWAMAQ 168

Query: 112 VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +G   ++ ++++     L  R  K +       +  P      +    Y   D       
Sbjct: 169 LGAGKEMGTRQLVAV-LLHQRIDKPKKITLSNWQQVPLSPAQIQ----YAALDALAANHC 223

Query: 172 FKRLEPLS 179
           F +L    
Sbjct: 224 FWQLIEKL 231


>gi|325972527|ref|YP_004248718.1| 3'-5' exonuclease [Spirochaeta sp. Buddy]
 gi|324027765|gb|ADY14524.1| 3'-5' exonuclease [Spirochaeta sp. Buddy]
          Length = 294

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 52/175 (29%), Gaps = 28/175 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
           T+ +DFE        +  +  Y E   + L    FD     L D        + LK  LE
Sbjct: 27  TVAMDFE-------GEFNLHIYGEH--LCLIQL-FDGSAYALVDPFTLSK--EALKAFLE 74

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V  +   +  +++  +++ +         + A + G    L  + E        
Sbjct: 75  DASLLKVMFDCASDSALVRKQYDILLD--GVYDIRIAALALGYIGNLTGLVERY------ 126

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREIFKRLE 176
                  I    K        ++         +    EY   DV     +   L+
Sbjct: 127 -------IPEAEKPNLSSKKKNQMTNWLIRPLKSDQIEYALSDVEHLLVLKDILD 174


>gi|291335807|gb|ADD95407.1| hypothetical protein [uncultured phage MedDCM-OCT-S05-C849]
          Length = 124

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 37/132 (28%), Gaps = 14/132 (10%)

Query: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAG--EQWKLKAFETGEDLYVTTYARS 416
                 R    AS G  +V ADLAGIE R+LA   G  +  +        D++     + 
Sbjct: 5   PADKEFRELFTASPGMTMVGADLAGIELRMLAHYLGRYDGGRYADILLNGDIHQVNADKI 64

Query: 417 FNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWE 476
                       R   K +  A  Y  G         +    L+      K     +   
Sbjct: 65  ---------GISRRQVKTVSYAYLYGAGNLKL---GLSYDSTLSETKAAKKGKKLGKLLL 112

Query: 477 DAENFCRWMQEN 488
                    ++ 
Sbjct: 113 KLLMDYLNYKKQ 124


>gi|50954730|ref|YP_062018.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951212|gb|AAT88913.1| ribonuclease [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 398

 Score = 41.6 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 35/132 (26%), Gaps = 22/132 (16%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEG 126
            V H +  + T L+    + +       T + AR  G+P   L  V E L          
Sbjct: 78  WVLHAATQDLTCLRE---VGLDPVTIFDTELAARLLGMPRVGLGTVVEEL---------- 124

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELW 186
                            D +       W    EY   DV +  ++   +  L     +  
Sbjct: 125 -----LGIHLTKEHSAADWSTRPLPGPW---LEYAALDVELLPDLRDAVAGLLDAADKTE 176

Query: 187 YLDQTINDRGYC 198
              Q   D    
Sbjct: 177 IARQEFEDELTR 188


>gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2]
 gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2]
          Length = 1463

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 45/185 (24%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------------- 43
           ET    D+   G+     D  + L A       +                          
Sbjct: 420 ETYVVFDVETTGLSA-VYDTIIELAAVKVKGGEIIERFERFANPHRPLSATIIELTGITD 478

Query: 44  --LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTL 97
             L D      + +  KE + +   T+VAHN+ F+   +    K   N +   +  I TL
Sbjct: 479 DMLKDAPEVEEVIRDFKEWVGD--HTLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTL 536

Query: 98  VLARSNGL---PSALKAVGE--------ALKLSSQKMEEGKELIARFCKGETHECLYDRN 146
            L R          L  + +          +        G  L+           LY   
Sbjct: 537 ELGRFLYPEFKNHRLNTLCKKFDIELTQHHRAIYDTEATGYLLVKMLKDAAEKNILYHDQ 596

Query: 147 KPNHR 151
              + 
Sbjct: 597 LNENM 601


>gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
          Length = 231

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 11/118 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP- 106
            V+ Q  KE   +    +VAHN+ F+   +   +    +    +  + TL LAR      
Sbjct: 63  EVVLQRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAKNAVVDTLELARFLYPHF 120

Query: 107 --SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               L  + +   +      +     E  A        +     +   H       GE
Sbjct: 121 KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEYHDSLNDYMGE 178


>gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247]
 gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM
           43247]
          Length = 595

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 28/136 (20%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVIL-FAFGFDDH---PVELWDCV------- 48
           + +D ET         +T+ G  K      V+  FA   D     P ++           
Sbjct: 39  VVVDLETTGSDPAGDRITEIGAVK-IRGGEVLGEFATLVDPERSIPPQIVTLTGITHAMV 97

Query: 49  HDPVMPQVLKEAL---ENTDVTIVAHNSYFERTVLKA-----CFNLDIPIHRWICTL--- 97
                 + +  A        +  VAHN+ F+   L+        +   P+     T+   
Sbjct: 98  SAAPRIEEVLPAFIEFARGSIL-VAHNARFDMGFLRRNAQRLHLDFPFPLSLCTVTMARR 156

Query: 98  VLARSNGLPSALKAVG 113
           +L R       L A+ 
Sbjct: 157 ILHREEAPTVRLSALA 172


>gi|322494373|emb|CBZ29674.1| DNA polymerase III epsilon subunit-like exonuclease [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 347

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 67  TIVAHNSYFERTVLKACF---NLDI---PIHRWICTLVLARSNGLPS--ALKAVGEALKL 118
            +VAHN+ F+   L+         I   P +   CT   A+         L A+   L +
Sbjct: 249 PLVAHNASFDARFLEHHLRRCGYQIFWQPQYPLTCTRQWAQVAYPHLANNLDALCAFLGI 308

Query: 119 S 119
            
Sbjct: 309 D 309


>gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 1407

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 27/135 (20%)

Query: 6   IDFETRSPIDLT---------KCGICKYAEDVCV-----ILFAFGF-----DDHPVELWD 46
            D ET    ++          K    K  +         I  +  F           + D
Sbjct: 397 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPIS-SFITKLTGIDESIVKD 455

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICTLVLARSNG 104
                 +     E   +++  +VAHN+ F+ + +K      ++ ++   + TL L+R   
Sbjct: 456 APSIEEILPNFLEF--SSNSVLVAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRHLY 513

Query: 105 ---LPSALKAVGEAL 116
                  L  + E L
Sbjct: 514 KDLKNYKLDTLSEHL 528


>gi|168752095|ref|ZP_02777117.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113]
 gi|168758576|ref|ZP_02783583.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401]
 gi|168770825|ref|ZP_02795832.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486]
 gi|168783143|ref|ZP_02808150.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076]
 gi|168802378|ref|ZP_02827385.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508]
 gi|195939745|ref|ZP_03085127.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4024]
 gi|208810405|ref|ZP_03252281.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206]
 gi|208816703|ref|ZP_03257823.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045]
 gi|208820052|ref|ZP_03260372.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042]
 gi|209398184|ref|YP_002270926.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115]
 gi|254793468|ref|YP_003078305.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14359]
 gi|188013988|gb|EDU52110.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4113]
 gi|188999500|gb|EDU68486.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4076]
 gi|189354630|gb|EDU73049.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4401]
 gi|189360293|gb|EDU78712.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4486]
 gi|189375616|gb|EDU94032.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC508]
 gi|208724921|gb|EDZ74628.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4206]
 gi|208731046|gb|EDZ79735.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4045]
 gi|208740175|gb|EDZ87857.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4042]
 gi|209159584|gb|ACI37017.1| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4115]
 gi|209767642|gb|ACI82133.1| exonuclease X [Escherichia coli]
 gi|209767646|gb|ACI82135.1| exonuclease X [Escherichia coli]
 gi|254592868|gb|ACT72229.1| DNA exonuclease X [Escherichia coli O157:H7 str. TW14359]
 gi|326343773|gb|EGD67535.1| Exodeoxyribonuclease X [Escherichia coli O157:H7 str. 1125]
          Length = 220

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|168462596|ref|ZP_02696527.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195633859|gb|EDX52211.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 232

 Score = 41.6 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDR----PITPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|327392834|dbj|BAK10256.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 43/163 (26%), Gaps = 35/163 (21%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILF----------------------AFGFD 38
             + +D ET     +       +  E   V +                       AFG  
Sbjct: 7   RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFGVH 66

Query: 39  D-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIHRWI 94
                 L D      +     + +      +V HN+ F+   +   F      I      
Sbjct: 67  GIADEFLLDKPTFSDIADEFLDYIR--GAELVIHNASFDIGFMDYEFGKLQRGIEKTETF 124

Query: 95  ----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                +L +AR        +L A+    ++ + K      L+ 
Sbjct: 125 CKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 167


>gi|307717326|gb|ADN88716.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717328|gb|ADN88717.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717342|gb|ADN88724.1| DNA polymerase III [Listeria marthii]
 gi|307717348|gb|ADN88727.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717364|gb|ADN88735.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717370|gb|ADN88738.1| DNA polymerase III [Listeria marthii]
 gi|307717372|gb|ADN88739.1| DNA polymerase III [Listeria marthii]
 gi|307717376|gb|ADN88741.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717382|gb|ADN88744.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717384|gb|ADN88745.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717398|gb|ADN88752.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717404|gb|ADN88755.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP- 106
            V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL LAR      
Sbjct: 63  DVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELARFLYPHF 120

Query: 107 --SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               L  + +   +      +     E  A        +     +   H       GE
Sbjct: 121 KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDFHDSLNDYMGE 178


>gi|291616383|ref|YP_003519125.1| DnaQ [Pantoea ananatis LMG 20103]
 gi|291151413|gb|ADD75997.1| DnaQ [Pantoea ananatis LMG 20103]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 41/166 (24%), Gaps = 41/166 (24%)

Query: 2   ATLFIDFETRSPIDLTKC----------GICKYAE-----------------DVCVILFA 34
             + +D ET     +             G+                      D       
Sbjct: 7   RQIVLDTETTGMNMIGVHYEGHRIIEIGGVEVINRRLTGNNFHMYLKPDRLVDPEAFGV- 65

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN---LDIPIH 91
            G  D    L D      +     + +      +V HN+ F+   +   F      I   
Sbjct: 66  HGIADE--FLLDKPTFSDIADEFLDYIR--GAELVIHNASFDIGFMDYEFGKLQRGIEKT 121

Query: 92  RWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                   +L +AR        +L A+    ++ + K      L+ 
Sbjct: 122 ETFCKITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 167


>gi|229174271|ref|ZP_04301804.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
 gi|228609128|gb|EEK66417.1| DNA polymerase III alpha subunit [Bacillus cereus MM3]
          Length = 318

 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 22/159 (13%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AF-----GFDDHPVELWDCVH-- 49
             + IDFET         + +    KY     V  F ++        D    L    +  
Sbjct: 12  DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYR 71

Query: 50  --DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA-- 100
             D    + +            I+AHN+ F+   LK+      L  P ++ I T+ LA  
Sbjct: 72  VSDAPTIEEVLPLFLAFLHTNVIIAHNASFDMRFLKSNVSMLGLPEPQNKVIDTVFLAKK 131

Query: 101 RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
              +     L+ +   L +         + I      + 
Sbjct: 132 YMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 170


>gi|192359630|ref|YP_001983342.1| DNA polymerase II [Cellvibrio japonicus Ueda107]
 gi|190685795|gb|ACE83473.1| DNA polymerase II [Cellvibrio japonicus Ueda107]
          Length = 798

 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 27/193 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVIL-FAFGFDDHPVELWDCVHDPVMPQVLKEA 60
             L +D ET S        I  + E   ++L    G D   V    C  +    +     
Sbjct: 152 RMLSLDIET-SMDATQLYSIGIWCEQAKIVLMVGEGQDTESVRF--CSDERTCLEAFFVC 208

Query: 61  LE--NTDVTIVAHNS-YFERTVLKA---CFNLDIPIHRWICTLVL---------ARSNGL 105
           +E  + D+ ++  N   F+  VL+      N+ + + R   ++           +     
Sbjct: 209 IEQLDPDI-VIGWNLVQFDLLVLEKLCQRLNISLRLGRAGQSIHWRHEEGDGGRSFVVIP 267

Query: 106 PS-ALK--AVGEALKLSSQKMEEGKELIARFCKGETHEC---LYDRNKPNHREAWRLFGE 159
              AL    + +A     +             +G+         D     H +   L  +
Sbjct: 268 GRVALDGIDLLKAANPRFETYALQHVAEELLGEGKLLSGSDRGGDITHLFHNDKLALA-Q 326

Query: 160 YCKGDVTVTREIF 172
           Y   D  +   IF
Sbjct: 327 YNLRDCELAWSIF 339


>gi|306835906|ref|ZP_07468899.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49726]
 gi|304568180|gb|EFM43752.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49726]
          Length = 233

 Score = 41.6 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 47/154 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWDCVHDPVM------- 53
             L  D ET S             +D  ++  A    D   V+  + + DP +       
Sbjct: 17  RMLAFDLETTSANP----------KDARIVTSALVRIDGRDVQKVEHLADPGIEIPQAAT 66

Query: 54  ------------------------PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
                                      +K A E+  +T++ +N+ F+ TVL++       
Sbjct: 67  DVHGITTEKAQAEGRPHEEVLKDTVDAIKSAWED-GLTLIVYNAAFDLTVLRSLTGDFTV 125

Query: 90  IHRWICTLVLARSNGL----PSALKAVGEALKLS 119
                   V+ R +         L AV E   + 
Sbjct: 126 TGPVFDPYVIDRVSDKWRKGKRTLGAVCEHYGVE 159


>gi|315606343|ref|ZP_07881359.1| DNA-directed DNA polymerase III alpha subunit [Prevotella buccae
           ATCC 33574]
 gi|315252034|gb|EFU32007.1| DNA-directed DNA polymerase III alpha subunit [Prevotella buccae
           ATCC 33574]
          Length = 1240

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 10/115 (8%), Positives = 33/115 (28%), Gaps = 14/115 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLP 106
             +P  +K    +  +        ++   ++      + + +   +    ++L+R     
Sbjct: 720 DYIPDFIKRK-NDPSLVK------YDIPCMEKYLKDTYGITVYQEQV---MLLSRQLANF 769

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           +  ++      +  +K      +  +F K         +        W  F  Y 
Sbjct: 770 TRGESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYA 824


>gi|313631122|gb|EFR98661.1| DNA polymerase [Listeria seeligeri FSL N1-067]
          Length = 36

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 97  LVLARSNGLPSALKAVGEALKLSSQKMEEGKELIAR 132
           +V     GLP++L  + +AL+L+ +K  EGK LI  
Sbjct: 1   MVHGTLLGLPASLDMMSKALRLAQEKDNEGKALIRY 36


>gi|300727261|ref|ZP_07060677.1| exonuclease [Prevotella bryantii B14]
 gi|299775499|gb|EFI72093.1| exonuclease [Prevotella bryantii B14]
          Length = 163

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 25/140 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICK-YAEDVCVILFAFG-FDDHPVEL--------------- 44
             + IDFET +    + C +      +  ++   +      P                  
Sbjct: 3   DFVSIDFETANNERSSVCSVGIVIVRNGEIVDSFYSLIQPEPNYYNYWCSQVHGLCHEDT 62

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
            D    P +   ++  +EN  + +VAHN  F+   LK     + +D P + +  TL ++R
Sbjct: 63  DDAPVFPKVWAQIEPLIEN--LPLVAHNKPFDEGCLKAVFRVYQMDYPDYEFYDTLCVSR 120

Query: 102 SNGL---PSALKAVGEALKL 118
                     L+ V  A   
Sbjct: 121 RVLPDLENHQLQTVAAACGY 140


>gi|288926043|ref|ZP_06419972.1| DNA polymerase III, alpha subunit [Prevotella buccae D17]
 gi|288337263|gb|EFC75620.1| DNA polymerase III, alpha subunit [Prevotella buccae D17]
          Length = 1240

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 10/115 (8%), Positives = 33/115 (28%), Gaps = 14/115 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLP 106
             +P  +K    +  +        ++   ++      + + +   +    ++L+R     
Sbjct: 720 DYIPDFIKRK-NDPSLVK------YDIPCMEKYLKDTYGITVYQEQV---MLLSRQLANF 769

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           +  ++      +  +K      +  +F K         +        W  F  Y 
Sbjct: 770 TRGESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYA 824


>gi|240016725|ref|ZP_04723265.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
           FA6140]
          Length = 244

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 49/181 (27%), Gaps = 40/181 (22%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFAF 35
             + +D ET                       +T   +  Y         E   V     
Sbjct: 4   RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIP----- 89
              +      +      + + + + L      ++ HN+ F+   L   F  + +P     
Sbjct: 64  QVLEEK----NAPPFAEVGRQIADFLR--GAELIIHNAKFDVGFLNMEFRRVGLPTVEEL 117

Query: 90  IHRWICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                 TL +AR       ++L A+     +   K      LI     GE +  +  R  
Sbjct: 118 GCTVTDTLAIAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQF 177

Query: 148 P 148
            
Sbjct: 178 D 178


>gi|320580744|gb|EFW94966.1| hypothetical protein HPODL_3338 [Pichia angusta DL-1]
          Length = 851

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/152 (7%), Positives = 38/152 (25%), Gaps = 16/152 (10%)

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
             + +    + + + RW   L+ +R+      L   G +L +   +   G  +   + + 
Sbjct: 653 WKIWENYLIVAVKLGRWDDVLLASRTLLDTRKLDGDG-SLDIPILEKLAGLLVSEPYDEE 711

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTIN--- 193
                          +       Y          +++ +  +    ++ W   +      
Sbjct: 712 ARQTHFQRTCLKFLCQEVPAVVNYSA-------RVWRIVAKVDLWRKKPWLALEDYEKAY 764

Query: 194 -----DRGYCVDVALAHTLNQIVDVERTKLDQ 220
                     VD           +   +  + 
Sbjct: 765 RAAISRPELEVDQDAWREAVTACEDLVSAYEN 796


>gi|238762951|ref|ZP_04623918.1| Ribonuclease D [Yersinia kristensenii ATCC 33638]
 gi|238698709|gb|EEP91459.1| Ribonuclease D [Yersinia kristensenii ATCC 33638]
          Length = 373

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 60/217 (27%), Gaps = 48/217 (22%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV- 56
            + +D E     T                   + L    +D   + L D +    + Q  
Sbjct: 24  HVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPL---PITQWQ 64

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +E L++ +V    H    +  V    F  DI     I T VLA  +G   +       
Sbjct: 65  PFRELLQDLNVVKYLHAGSEDLEVFLNAF--DIMPTPMIDTQVLAAFSGRTLS------- 115

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                     G  ++    +G   +    R     R       +Y   DV     +  +L
Sbjct: 116 ---------CGFAMLVNEFEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLATKL 166

Query: 176 EPLSS----KEQELWYLDQTINDRGYCVDVALAHTLN 208
              +      +      +     R   +D  LA+   
Sbjct: 167 VEATEAAGRMDAAKDECELLCRRRSETLDPELAYREI 203


>gi|288549752|ref|ZP_05968046.2| ribonuclease D [Enterobacter cancerogenus ATCC 35316]
 gi|288317705|gb|EFC56643.1| ribonuclease D [Enterobacter cancerogenus ATCC 35316]
          Length = 384

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 51/201 (25%), Gaps = 42/201 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVL 57
           + +D E     T                   + L    +D   V L D        P  +
Sbjct: 34  IALDTEFVRTRTYY---------------PQLGLIQM-YDGKRVSLIDPLGITDWTP--M 75

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           ++ L +T VT   H    +  V    F +       I T +LA  +  P +        +
Sbjct: 76  RDLLLDTAVTKYLHAGSEDLEVFLNTFGI--MPQPLIDTQILAAFSNRPLSWGFAAMVEE 133

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            +   +++ +       +  T                    EY   DV     I  +L  
Sbjct: 134 YTGLTLDKSESRTDWLARPLT----------------ARQLEYAAADVFYLLPIAGQLMK 177

Query: 178 LSSKEQELWYLDQTINDRGYC 198
            S     L             
Sbjct: 178 ESEASGWLSAALDECRMAQQR 198


>gi|158521964|ref|YP_001529834.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158510790|gb|ABW67757.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 959

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 31/176 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            D ET       + G    A+    +  +     D   + +D   +  +   ++    + 
Sbjct: 789 FDIET--QRSAAEVGGWHRADR---MGISCVVLYDSATDTYDAFLENQVAAFIRRL--SD 841

Query: 65  DVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVL---ARSNGLPSALKAVGEALKLSS 120
              +V  N+  F+  VL    + D+     +   +L    ++ G   +L ++ E      
Sbjct: 842 FDLVVGFNNKRFDNQVLAGYSDADLSRLPTLD--ILEEVHKTLGYRLSLDSLAE------ 893

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                    I    K               +       EYCK DV +T++++   +
Sbjct: 894 ---------ITLGAK--KSANGLQALIWWQQGEIDKIVEYCKKDVQITKDLYLYGK 938


>gi|260592651|ref|ZP_05858109.1| DNA polymerase III, alpha subunit [Prevotella veroralis F0319]
 gi|260535421|gb|EEX18038.1| DNA polymerase III, alpha subunit [Prevotella veroralis F0319]
          Length = 1239

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 10/115 (8%), Positives = 34/115 (29%), Gaps = 14/115 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLP 106
             +P  +K    +  +        ++   ++      + + +   +    ++L+R     
Sbjct: 720 DYIPDFIKRK-NDPSLVK------YDIPCMEKYLKDTYGITVYQEQV---MLLSRQLASF 769

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           +  ++      +  +K     ++  +F K         +        W  F  Y 
Sbjct: 770 TRGESDALRKAMGKKKKAIVDQMKPKFIKQGQANGHDPQILEKIWSDWEKFASYA 824


>gi|109521529|ref|YP_655957.1| gp92 [Mycobacterium phage Wildcat]
 gi|91980981|gb|ABE67697.1| gp92 [Mycobacterium phage Wildcat]
          Length = 286

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 45/170 (26%), Gaps = 33/170 (19%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSY-FERTVLKACFN-LDI-PIHRWICTLVLARSNGL-- 105
             M +  ++ + +    +V  NS  F+   L++     ++ P               L  
Sbjct: 87  EDMIRRARDVM-SQADFVVGWNSKQFDMGNLRSHMAEYNMNPPAPHHD-------LDLIK 138

Query: 106 ---------PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                       L+       L  +    G+                            L
Sbjct: 139 VSRSQFGFMSHTLEEAAAHFGLDGKMPHSGELWNDLRWLPYFDPDGEKLQTS-----RSL 193

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQEL------WYLDQTINDRGYCVD 200
             +Y + DV +T ++F ++ P   +            LD  I  R    D
Sbjct: 194 MKQYNQRDVELTEQVFMKMIPWIPRLNLYGNPELADELDADIRCRRCNSD 243


>gi|116672512|ref|YP_833445.1| DNA polymerase III subunit epsilon [Arthrobacter sp. FB24]
 gi|116612621|gb|ABK05345.1| DNA polymerase III, epsilon subunit [Arthrobacter sp. FB24]
          Length = 406

 Score = 41.3 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 46  DCVHDP---VMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-----LDIPIHRWICTL 97
           D +H P    +   + E L      +VAHN +F+   +          L   +H  +CT+
Sbjct: 62  DILHAPVFGDIAHDVMELLA--GRVLVAHNVHFDYRFVSHELGRAGLELPFEVHDCLCTM 119

Query: 98  VLA--RSNGLPSALKAVGEALKLS 119
            LA     G   +LK   ++  L+
Sbjct: 120 KLARRYLPGAGRSLKDCCDSFGLN 143


>gi|164655431|ref|XP_001728845.1| hypothetical protein MGL_4012 [Malassezia globosa CBS 7966]
 gi|159102731|gb|EDP41631.1| hypothetical protein MGL_4012 [Malassezia globosa CBS 7966]
          Length = 1518

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 80/317 (25%), Gaps = 67/317 (21%)

Query: 346  LPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETG 405
              T +T+       I   ++S V AS G  +V AD+   E   +  + G+        T 
Sbjct: 929  EKTWLTASNAKKNRIGSELKSMVKASPGWSIVGADVDSEEL-WICSVMGDAQFGIHGATA 987

Query: 406  EDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNT 461
                    +++        T       R   KV   +  Y  G +   ++      ++  
Sbjct: 988  IGWMTLEGSKAQGTDLHSKTASILGTSRDQAKVFNYSRIYGAGIRHAMQLLLKANPSMPV 1047

Query: 462  FAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELW 521
                                                      +++               
Sbjct: 1048 DEAS-----------------------------------RRAKQL--------------- 1057

Query: 522  NELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRD--VGNNRSY 579
                 A  +           +R                + L         D  +    S 
Sbjct: 1058 ----YAATKGQNTRSQKYFGRRFWYGGTESFVFNKLEEIALSEQPRTPALDCGITAALSK 1113

Query: 580  LNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGMMNA---TKAGYDIVLTVHDEIV 633
                  + + +  Y       +VQ+   D   +L   M +           +L+VHDE+ 
Sbjct: 1114 QFLPKTRGSAQQDYMPSRINWVVQSSGVDYLHLLITSMTHLCKTYDIEARFMLSVHDEVR 1173

Query: 634  CETPDTDEFNASMLYHL 650
                D+D++ A++   +
Sbjct: 1174 YLARDSDKYRAALALQI 1190


>gi|332298225|ref|YP_004440147.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
           12168]
 gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
           12168]
          Length = 186

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 40/143 (27%), Gaps = 34/143 (23%)

Query: 5   FIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD---------- 50
             D ET         L + G  ++ ++  +  +    +                      
Sbjct: 25  AFDTETTGLKPEYERLIEIGAIRFDKNGIIARYDILINPGK----PIPPGASAINNITDD 80

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                     +       + ++   +VAHN+ F+ + +         +   +    T+ L
Sbjct: 81  MVRNCPLIESVLPDFLTFVRDS--VLVAHNAGFDLSFVNKELERSGFNPLKNNAADTVHL 138

Query: 100 ARS---NGLPSALKAVGEALKLS 119
           ARS         L+++     + 
Sbjct: 139 ARSRFPQLPNHKLQSLAAYFGID 161


>gi|298245785|ref|ZP_06969591.1| 3'-5' exonuclease [Ktedonobacter racemifer DSM 44963]
 gi|297553266|gb|EFH87131.1| 3'-5' exonuclease [Ktedonobacter racemifer DSM 44963]
          Length = 402

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 53/241 (21%), Gaps = 32/241 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E      L+            + L     +     + D +    +   L   + 
Sbjct: 57  VVAIDAEFTQVRSLSAESNGSTV--PRLALLQLAIEKQ-CFVVDTLRLKDL-SPLNTVVS 112

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           + DV ++ H +  +  V+                 V                +  +  Q 
Sbjct: 113 DPDVIVLLHGAGADLRVMA--------ERGVF---VAHYY-------DLEATSRSVFGQH 154

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                 ++ R       + L   +             Y   D   T  ++  L       
Sbjct: 155 ESSLAAMLWRAFHMRLDKSLQRTDWTRRPLPPA-MVAYAARDAEATLALYSWLGQH---- 209

Query: 183 QELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTW 242
                + Q     G       A +  +           E+  +        R   ++   
Sbjct: 210 --FHAVLQLHEYPGQ---TEQAASWIEPFLRGTAHTSPEMAVMEARAEGIIRNKAQIYAD 264

Query: 243 L 243
            
Sbjct: 265 C 265


>gi|229096133|ref|ZP_04227106.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-29]
 gi|229115089|ref|ZP_04244499.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-3]
 gi|228668229|gb|EEL23661.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-3]
 gi|228687093|gb|EEL40998.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-29]
          Length = 934

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 40/144 (27%), Gaps = 24/144 (16%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVI-LFAFGFDDH---PVELWDCVHDPV 52
             + +D ET         D          ED  ++ +F+   +     PV + +      
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPVFITELTGIDE 63

Query: 53  MPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
                    ++              VAHN +F+   L                I T+ LA
Sbjct: 64  SLVKQAPLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVELA 123

Query: 101 RSNGL---PSALKAVGEALKLSSQ 121
           +          L+ + +  +L   
Sbjct: 124 QILLPTADSYKLRDLAKKHELEHD 147


>gi|227327782|ref|ZP_03831806.1| ribonuclease D [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 374

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 42/169 (24%), Gaps = 42/169 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQV 56
            + +D E     T                   + L    +D   + L D        P  
Sbjct: 24  QVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPLTITDWAP-- 65

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  L +  VT   H    +  V    F  +     +I T +LA   G P +        
Sbjct: 66  FQALLRDEQVTKFLHAGSEDLEVFLNAF--ETLPTPFIDTQILAAFLGKPLSYGFAALVA 123

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                 +++ +       +  +                    +Y   DV
Sbjct: 124 DYMGVTLDKSESRTDWLARPLS----------------EKQCDYAAADV 156


>gi|167920040|ref|ZP_02507131.1| possible DNA polymerase/helicase [Burkholderia pseudomallei BCC215]
          Length = 346

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|167912066|ref|ZP_02499157.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 112]
          Length = 343

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|167903799|ref|ZP_02491004.1| possible DNA polymerase/helicase [Burkholderia pseudomallei NCTC
           13177]
          Length = 349

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|167895415|ref|ZP_02482817.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 7894]
          Length = 350

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|167846824|ref|ZP_02472332.1| possible DNA polymerase/helicase [Burkholderia pseudomallei B7210]
          Length = 348

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|167825322|ref|ZP_02456793.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 9]
          Length = 352

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|167739715|ref|ZP_02412489.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 14]
          Length = 323

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|167720732|ref|ZP_02403968.1| possible DNA polymerase/helicase [Burkholderia pseudomallei DM98]
          Length = 334

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|254192262|ref|ZP_04898751.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157987457|gb|EDO95233.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 310

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 20  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 78

Query: 118 L 118
           L
Sbjct: 79  L 79


>gi|55820864|ref|YP_139306.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55736849|gb|AAV60491.1| ATP-dependent DNA helicase, truncated [Streptococcus thermophilus
           LMG 18311]
          Length = 557

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         ++   R   T+ LA+       
Sbjct: 86  EIARTIFELIED--CIFVAHNVKFDANLLAEALFMEGFELRTPRV-DTVELAQVFYPTLE 142

Query: 107 -SALKAVGEALKLS 119
              L  +   L L 
Sbjct: 143 QYNLSYLSRVLNLD 156


>gi|254295577|ref|ZP_04963035.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
 gi|157805524|gb|EDO82694.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           406e]
          Length = 381

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|126438667|ref|YP_001059957.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 668]
 gi|126218160|gb|ABN81666.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 668]
          Length = 381

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|76808562|ref|YP_334417.1| DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126455164|ref|YP_001067249.1| exonuclease DNA polymerase III subunit epsilon [Burkholderia
           pseudomallei 1106a]
 gi|134278018|ref|ZP_01764733.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|217420886|ref|ZP_03452391.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242315973|ref|ZP_04814989.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254195634|ref|ZP_04902061.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|254261397|ref|ZP_04952451.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
 gi|76578015|gb|ABA47490.1| possible DNA polymerase/helicase [Burkholderia pseudomallei 1710b]
 gi|126228806|gb|ABN92346.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106a]
 gi|134251668|gb|EBA51747.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 305]
 gi|169652380|gb|EDS85073.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei S13]
 gi|217396298|gb|EEC36315.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei 576]
 gi|242139212|gb|EES25614.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1106b]
 gi|254220086|gb|EET09470.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1710a]
          Length = 381

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|226197921|ref|ZP_03793495.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813373|ref|YP_002897824.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|254181036|ref|ZP_04887634.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|184211575|gb|EDU08618.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           1655]
 gi|225930109|gb|EEH26122.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506315|gb|ACQ98633.1| exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 381

 Score = 41.3 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGIAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1010

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 39/163 (23%)

Query: 16  LTKCGICKYAEDVCVILFAFGFDDHPV----------------ELWDCV--------HDP 51
           +   G+ KY++ +  I  A   ++  +                ++ +            P
Sbjct: 1   METTGLYKYSDKITEIG-AVKVENGEITEVFNELVNPEKMIPEKVVELTGITNEMVMDKP 59

Query: 52  VMPQVLKEALE-NTDVTIVAHNSYFERTVLKACF-NLDIPIHRWI-CTLVLARSNGLPS- 107
            + ++L + LE + D   V  N+ F+   +K    NL          TL +AR+      
Sbjct: 60  KIDEILPKFLEFSKDAYFVGQNTDFDIGFVKEACDNLSYQFEPIYLDTLPMARAVFPSMG 119

Query: 108 --ALKAVGE--------ALKLSSQKMEEGKELIARFCKGETHE 140
             +L  + +          + S   M   K  I  F K +   
Sbjct: 120 RFSLDKLAKKLAVGPFNHHRASDDAMTTAKVFIKLFEKIKDKN 162


>gi|154299492|ref|XP_001550165.1| hypothetical protein BC1G_11008 [Botryotinia fuckeliana B05.10]
 gi|150857350|gb|EDN32542.1| hypothetical protein BC1G_11008 [Botryotinia fuckeliana B05.10]
          Length = 1122

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 55/460 (11%), Positives = 106/460 (23%), Gaps = 72/460 (15%)

Query: 100 ARSNGLP---SAL-KAVGEALKLSSQKMEEGKE------------LIARFCKGETHECLY 143
           +           L  AV E L     K  E K+             +    +        
Sbjct: 412 SYVANAEATYHKLSDAVQERLLALKDKALEIKDDPELWKNDPWLKQLDWSIQEIKMVKGK 471

Query: 144 DRNKPNHREAWRLF--------GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
            +N P      +            Y K    +   +  R+ PL  +     Y        
Sbjct: 472 TKNDPPRPAKRQKMPGMPQWYKDLYPKVSGPINLSVRTRIAPLLLRMAWDGYPLVWSEKY 531

Query: 196 GY--CVDVALAHTLNQIVDVERTKLDQ--------------ELESLTYGLVSSSRCLEKL 239
           G+   V +  AH   Q    E    ++              ++      L      + K 
Sbjct: 532 GWTFRVPIEEAHNYKQKQMQECNAFEEADMALRDDTSAAYFKIPHKDGPLAKCGSPMAKS 591

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
               F +  L       +  +  L  N           + R R      +          
Sbjct: 592 YVQYFDKGIL---SSEYSYAKEALEMNAS----CSYWISARNRIQSQMTVY--------E 636

Query: 300 SDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
            DG    T                  PQ +P  + +   ++        +          
Sbjct: 637 KDGAKGPTTSQSKLETGYIL------PQIIPMGTVTRRAVENTWLTASNAK------PNR 684

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           +   ++S + A  G   V AD+   E   +A + G+                   ++   
Sbjct: 685 VGSELKSMIKAPPGYCFVGADVDSEEL-WIASLVGDAQFKLHGGNAVGFMTLEGTKAAGT 743

Query: 420 APAQVT----KDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
                T       R   KV      Y  G K    +      +L          +  +  
Sbjct: 744 DLHSRTAGILGITRNDAKVFNYGRIYGAGLKFASTLLRQFNPSLTEAETSHTAGNLYKAT 803

Query: 476 EDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHS 515
           +  +   + +          + F+    E   +  + +  
Sbjct: 804 KGVKTSRKILYPGPFWRGGTESFVFNKLEEFAEQEKPRTP 843


>gi|296472380|gb|DAA14495.1| Werner syndrome [Bos taurus]
          Length = 707

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 65/238 (27%), Gaps = 44/238 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             +  D E        K  + + A      L      +    L+        PQ LK  L
Sbjct: 75  DVVGFDIE---WPPFKKGTLSRVA------LIQLCVAESKCYLFHISSMSGFPQGLKMLL 125

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSS 120
           EN  +                   + I   +W       +        LK++ E   +++
Sbjct: 126 ENEAIKK---------------AGVGIEQDQW-------KLLRDFDINLKSIVELTDVAN 163

Query: 121 QKMEEGKE-----LIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
           +K++  +      L+      +  +    R     R         Y   D      I+++
Sbjct: 164 EKLKCIETWSLNGLVKYLFGKQLLKDRSIRCSDWSRFPLTEDQKVYAATDAYAGFIIYQK 223

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
           L  LS   Q   ++     +    +  +        +  E   L + L      L + 
Sbjct: 224 LANLSDPVQ--IFVKSKEEE----ILPSDVKKQLTSISKEMMDLAERLPDTFGKLENP 275


>gi|293354272|ref|XP_002728460.1| PREDICTED: Werner syndrome protein [Rattus norvegicus]
          Length = 1389

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 52/218 (23%), Gaps = 44/218 (20%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      +    L+      V PQ LK  LEN  +        
Sbjct: 126 DMEWPPIYKQGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIRK------ 179

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 180 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANR-KLKCAETWSLNGL 224

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           +      +  +    R               Y   D      I+                
Sbjct: 225 VKHVLGKQLLKDKSIRCSNWSDFPLSEDQKLYAATDAYAGLIIY---------------- 268

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            Q + + G  V V   +   + + +E  K    +    
Sbjct: 269 -QKLENLGDAVQVFALNKAEESLPMEMKKQLNSISEEM 305


>gi|293342482|ref|XP_002725246.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog isoform 2
           [Rattus norvegicus]
 gi|149057893|gb|EDM09136.1| rCG43045, isoform CRA_b [Rattus norvegicus]
          Length = 1335

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 52/218 (23%), Gaps = 44/218 (20%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      +    L+      V PQ LK  LEN  +        
Sbjct: 76  DMEWPPIYKQGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIRK------ 129

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 130 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANR-KLKCAETWSLNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           +      +  +    R               Y   D      I+                
Sbjct: 175 VKHVLGKQLLKDKSIRCSNWSDFPLSEDQKLYAATDAYAGLIIY---------------- 218

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            Q + + G  V V   +   + + +E  K    +    
Sbjct: 219 -QKLENLGDAVQVFALNKAEESLPMEMKKQLNSISEEM 255


>gi|109504268|ref|XP_001059940.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog isoform 1
           [Rattus norvegicus]
          Length = 1400

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 52/218 (23%), Gaps = 44/218 (20%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      +    L+      V PQ LK  LEN  +        
Sbjct: 76  DMEWPPIYKQGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIRK------ 129

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 130 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANR-KLKCAETWSLNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           +      +  +    R               Y   D      I+                
Sbjct: 175 VKHVLGKQLLKDKSIRCSNWSDFPLSEDQKLYAATDAYAGLIIY---------------- 218

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
            Q + + G  V V   +   + + +E  K    +    
Sbjct: 219 -QKLENLGDAVQVFALNKAEESLPMEMKKQLNSISEEM 255


>gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1]
 gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum
           reducens MI-1]
          Length = 1426

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDDHPVE--------------L 44
            + IDFET        ++ + G  KY     V  F    +                   +
Sbjct: 414 HVIIDFETTGFSPQTDEIIEIGAVKYLNGEEVGRFGTLVNPKKEIPFEVTKLTGITDEMV 473

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLA 100
            D          L E +   +  +VAHN+ F+ +     L+     ++  +  I TL +A
Sbjct: 474 KDAPDGKEALTALSEFM--GEAVLVAHNASFDLSFLRVGLRKYLKQEV-TNPAIDTLGVA 530

Query: 101 RSNGL---PSALKAVGEALKLS 119
           R          L  + +  K+ 
Sbjct: 531 RVLFPNLKNHKLNTLVKEFKIE 552


>gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis
           OL]
 gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
           OL]
          Length = 1402

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 27/140 (19%)

Query: 4   LFIDFETRS----PIDLTKCGICKYAEDVCVI-LFAFGFDDH----------PVELWD-C 47
           + +D ET         + + G  K  E+  +   F+   D                 D  
Sbjct: 391 VVVDVETTGFDSQKNKIIEIGAVK-IENGQITERFSTFVDPEGKIPVRISELTGIYQDMV 449

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              P +   + E     +  V  VAHN+ F+   LK  +    + I  + +I TL L+R 
Sbjct: 450 DKAPKLRDAILEFEKFASGSVL-VAHNAQFDIGFLKKAYQECGI-IFDYTYIDTLELSRR 507

Query: 103 N---GLPSALKAVGEALKLS 119
                    L  V E L + 
Sbjct: 508 LLTGLSSHKLNKVAEFLNVE 527


>gi|229817486|ref|ZP_04447768.1| hypothetical protein BIFANG_02749 [Bifidobacterium angulatum DSM
           20098]
 gi|229785275|gb|EEP21389.1| hypothetical protein BIFANG_02749 [Bifidobacterium angulatum DSM
           20098]
          Length = 430

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 22/131 (16%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D T + H++  +         + +   R   T + AR  GL    L AV E         
Sbjct: 90  DATWIIHDAMMDLPGFAQ---IGMTPQRLFDTEMAARMLGLSRFGLAAVTERY------- 139

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L     K  +      R  P      R +  Y   DV +  E+ +++        
Sbjct: 140 -----LGITLAKEHSAADWSYRPLP------RDWRNYAALDVELLIELERKMRADLKASG 188

Query: 184 ELWYLDQTIND 194
           +  + ++    
Sbjct: 189 KEEWAEEEFRH 199


>gi|194468559|ref|ZP_03074543.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205358811|ref|ZP_02659348.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194454923|gb|EDX43762.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331760|gb|EDZ18524.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 375

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 53/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T++T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AVLRDTEITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFAAMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 126 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 169

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 170 TEAAGWLPAALDECRLMQQR 189


>gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
           14580]
 gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580]
          Length = 1438

 Score = 41.3 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 37/145 (25%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------------- 43
           ET    D+   G+     D  + L A       +                          
Sbjct: 420 ETYVVFDVETTGLSA-VYDTIIELAAVKVKGGEIIERFERFANPHRPLSATIIELTGITD 478

Query: 44  --LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTL 97
             L D      + +  KE + +   T+VAHN+ F+   +    K   N +   +  I TL
Sbjct: 479 DMLKDAPEVEEVIRDFKEWVGD--HTLVAHNASFDIGFINVAYKRLLNSEKVQNPVIDTL 536

Query: 98  VLARSNGL---PSALKAVGEALKLS 119
            L R          L  + +   + 
Sbjct: 537 ELGRFLYPEFKNHRLNTLCKKFDIE 561


>gi|312278202|gb|ADQ62859.1| ATP-dependent DNA helicase [Streptococcus thermophilus ND03]
          Length = 828

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         ++   R   T+ LA+       
Sbjct: 75  EIARTIFELIED--CIFVAHNVKFDANLLAEALFMEGFELRTPRV-DTVELAQVFYPTLE 131

Query: 107 -SALKAVGEALKLS 119
              L  +   L L 
Sbjct: 132 QYNLSYLSRVLNLD 145


>gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 11/118 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP- 106
            V+ +  KE   +    +VAHN+ F+   +   +    +    +  + TL LAR      
Sbjct: 63  DVVLKRFKEWSADD--ILVAHNASFDMGFINTAYEKVGIPKAENAVVDTLELARFLYPHF 120

Query: 107 --SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               L  + +   +      +     E  A        +     +   H       GE
Sbjct: 121 KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIDYHDSLNDYMGE 178


>gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
 gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
           dagmatis ATCC 43325]
          Length = 253

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRW---ICTLVLARSNGL 105
            + Q   E ++  ++ I  HN+ F+   +   F   N+ +          TL +AR    
Sbjct: 83  EIAQQFIEYIQGAELLI--HNASFDIGFMDYEFSKLNIGLNTSEICLITDTLQMARQMYP 140

Query: 106 PS--ALKAVGEALKLSSQKMEEGKELIA 131
               +L A+ + L + + K      L+ 
Sbjct: 141 GKRNSLDALCDRLGIDNSKRTLHGALLD 168


>gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1489

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 70/232 (30%), Gaps = 39/232 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYA---EDVCV-----------ILFAFGFDD----HPVE 43
             +  D ET     LT   I   A   E+  +           +   F  +     +   
Sbjct: 461 RFVVFDIETTGFSSLTCQIIEIGAVLVENGEITDRFSTFVNPKVPIPFRIEQLTSINDSM 520

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT-VLKACFNLDI-PIHRWICTLVLAR 101
           + D      +     E   + D  +VAHN+ F+   ++K C  L I     ++ T+ +AR
Sbjct: 521 VMDAPTIEEVLPKFLEF--SKDAVMVAHNADFDMGFIMKNCDRLGIAHDFTYVDTVGMAR 578

Query: 102 SNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                     L  V +A+ +S   +E     +            + +             
Sbjct: 579 FLLPALNRFKLDTVAKAVGVS---LENHHRAVDDAACTAEIFVKFVKMLEERDI------ 629

Query: 159 EYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                DV         +   + ++   +++     +    +++    + + +
Sbjct: 630 ----RDVD-MLNEQGAVSVNTIRKLPTYHVIIFARNETGRINLYKLVSQSHL 676


>gi|229102245|ref|ZP_04232954.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-28]
 gi|228681146|gb|EEL35314.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-28]
          Length = 934

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 40/144 (27%), Gaps = 24/144 (16%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVI-LFAFGFDDH---PVELWDCVHDPV 52
             + +D ET         D          ED  ++ +F+   +     PV + +      
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPVFITELTGIDE 63

Query: 53  MPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
                    ++              VAHN +F+   L                I T+ LA
Sbjct: 64  SLVKQAPLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVELA 123

Query: 101 RSNGL---PSALKAVGEALKLSSQ 121
           +          L+ + +  +L   
Sbjct: 124 QILLPTADSYKLRDLAKKHELEHD 147


>gi|229818165|ref|ZP_04448447.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
           20098]
 gi|229784416|gb|EEP20530.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
           20098]
          Length = 186

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL- 105
             +       L     TIVAHN+ F+   L              + +I TL L+R+    
Sbjct: 85  EAVLPDFLAHLR-PSDTIVAHNANFDINFLYDNCMRTLGKPFS-YDFIDTLRLSRALFPQ 142

Query: 106 --PSALKAVGEALKLSSQKMEEG 126
                L  + +   ++ ++   G
Sbjct: 143 ERQHRLVDLIQRFGIADEEEHRG 165


>gi|187736064|ref|YP_001878176.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426116|gb|ACD05395.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 187

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 51/187 (27%), Gaps = 30/187 (16%)

Query: 1   MATL-FIDFETRSPIDLTKCGICKYAEDVCV-ILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M  + + D ETR      + G      ++ + +   +        ++       M   L 
Sbjct: 1   MRDIVYFDLETRHSA--AEVGGWHNTAEMRLSVGVTYSTASGKYTIYS----EEMVDDLI 54

Query: 59  EALENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV--GEA 115
             L +    +V +N  +F+  VL+     ++                + + L      E 
Sbjct: 55  RQL-SQADLVVGYNHEHFDYGVLQRYTMWNM--------------IDITNNLDLCKDIEQ 99

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR----EAWRLFGEYCKGDVTVTREI 171
                 K++          K               +    E       YC  DV VTR++
Sbjct: 100 RGGVRVKLDSVAAASIGSSKTAVGTQALKWWAEYAQTGNTELLMDIARYCCFDVKVTRDV 159

Query: 172 FKRLEPL 178
                  
Sbjct: 160 HWYGAEH 166


>gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745]
 gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus
           pentosaceus ATCC 25745]
          Length = 1437

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVLARSNG 104
            +  +    +E  E+    IV HN  F+   +          +I  +  I TL LAR   
Sbjct: 484 SEKEVFTKFREFYEDA--IIVGHNVTFDIGFMNTGYLRHGMEEIK-NPIIDTLTLARFLY 540

Query: 105 L---PSALKAVGEALKL 118
                  L  + +   +
Sbjct: 541 PTLKGYRLNTLAKKFGV 557


>gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI]
 gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
           anthracis str. CI]
          Length = 315

 Score = 41.3 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 26/161 (16%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                +     L+ +   L +         + I      + 
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167


>gi|333029171|ref|ZP_08457232.1| 3'-5' exonuclease [Bacteroides coprosuis DSM 18011]
 gi|332739768|gb|EGJ70250.1| 3'-5' exonuclease [Bacteroides coprosuis DSM 18011]
          Length = 211

 Score = 41.3 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 47/176 (26%), Gaps = 31/176 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID ETR      K    K A      L     D+  +     ++   +   L E LE
Sbjct: 45  ILGIDSETR--PAFVKGKSYKVA------LLQISTDN--ICFLFRLNKLGLVPELIELLE 94

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N ++  +  +   +  +L+            I                 + E +K    K
Sbjct: 95  NPNIKKIGLSLRDDFMMLRKRA--SFKQENCID----------------LQEYVKHFGIK 136

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEP 177
            +  +++       +       R               Y   D      I+  LE 
Sbjct: 137 DKSLQKI--YAILFKEKISKAQRLSNWEAVELTDAQQRYAATDAWSCLRIYNFLEE 190


>gi|332663701|ref|YP_004446489.1| 3'-5' exonuclease, PolB [Haliscomenobacter hydrossis DSM 1100]
 gi|332332515|gb|AEE49616.1| 3'-5' exonuclease, PolB [Haliscomenobacter hydrossis DSM 1100]
          Length = 249

 Score = 41.3 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 34/185 (18%)

Query: 21  ICKYAEDVCVILFAFGF-----DDHPVEL----WDCVHDPVMPQVLKEALEN-----TDV 66
              YAE   ++  + G      DD  +++    +    +  + +   E +          
Sbjct: 62  AAIYAEFGKIMCISVGVVYRDKDDKRLKVRLKSFAGHDEAQILKDFSELMAQHYPTPGKY 121

Query: 67  TIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSA--------LKAVGEALK 117
           +I  HN   F+   +     +              +   L           L  +     
Sbjct: 122 SICGHNIKEFDIPYICRRMVVHQMPFP--------KLLDLEGKKPWETLHLLDTLEMWKF 173

Query: 118 LSSQKMEEGK---ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
              +     K    L+      +  +           +       YC+ DV  T ++F R
Sbjct: 174 GDRKNYTSLKVLAALLDFPSPKDDIDGSQVGRVYWDEQDVERISFYCEKDVLATIQLFLR 233

Query: 175 LEPLS 179
              + 
Sbjct: 234 FRRMP 238


>gi|163784927|ref|ZP_02179686.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879804|gb|EDP73549.1| DNA polymerase III, alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 206

 Score = 41.3 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 19/122 (15%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH---RWICTLV 98
             + D  +   +   +   L+++   +VAHN+ F+ + L     +    +    +ICT  
Sbjct: 70  AMVIDKPYFEDIYPEVYNFLKDS--IVVAHNAKFDISFLSEVHKIVFKNNLRLHYICT-- 125

Query: 99  LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFG 158
                        +   +    QK +    L          +     +     +A++   
Sbjct: 126 -----------DNLARRIFPEIQK-KSLSSLTNYLGINFKQKHRALSDAQATLQAFQTML 173

Query: 159 EY 160
           EY
Sbjct: 174 EY 175


>gi|157147189|ref|YP_001454508.1| DNA polymerase III subunit epsilon [Citrobacter koseri ATCC
           BAA-895]
 gi|157084394|gb|ABV14072.1| hypothetical protein CKO_02968 [Citrobacter koseri ATCC BAA-895]
          Length = 246

 Score = 41.3 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 41/169 (24%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVVNRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTV-------LKACF 84
                  + D  +    K    +             +V HN+ F+          L    
Sbjct: 64  EAFGVHGIADEFLLD--KPVFADVVDDFLEYIRGAELVIHNASFDIGFMDYEFAKLSRGI 121

Query: 85  NLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  +   +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTSEFCKITDSLALARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|302671388|ref|YP_003831348.1| hypothetical protein bpr_I2032 [Butyrivibrio proteoclasticus B316]
 gi|302395861|gb|ADL34766.1| hypothetical protein bpr_I2032 [Butyrivibrio proteoclasticus B316]
          Length = 394

 Score = 41.3 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 53/191 (27%), Gaps = 45/191 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDPVMPQV 56
             LFID ET         G+     +  +I  ++ +  H   +         H+  M   
Sbjct: 29  KILFIDIETT--------GLSPKTSEAYLIGVSY-YQGHTWHIVQLMAETPEHEKEMLTN 79

Query: 57  LKEALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGE 114
            K  L +  + +   N   F+   L+  F                   G P   + +   
Sbjct: 80  FKTLLRDFKLLVHF-NGNRFDIPYLQGRF--------------AHYELGDPFEGIDSFDL 124

Query: 115 ALKLSSQKMEEG------KELIARFCKGETHECLYDRNKP--------NHREAWRLFGEY 160
             K+S  K+  G      K +          +    +  P           EA +L   +
Sbjct: 125 YKKISPYKLILGLPDCKQKTIELYLGIDREDKYDGGKLIPVYREFVESKSPEALKLLLLH 184

Query: 161 CKGDVTVTREI 171
              DV     +
Sbjct: 185 NFEDVKGMFGL 195


>gi|295703510|ref|YP_003596585.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
           DSM 319]
 gi|294801169|gb|ADF38235.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           megaterium DSM 319]
          Length = 933

 Score = 41.3 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL-- 105
             +   + E L++     VAHN  F+ T L+        +   +  + T+ LAR      
Sbjct: 72  EEISPKIIELLDDA--YFVAHNVAFDLTFLQEELYQCGRETLYNSTVDTVELARILLPTV 129

Query: 106 -PSALKAVGEALKLSSQ 121
               L  + E L +  +
Sbjct: 130 DGYKLSQLAEYLHIEHE 146


>gi|55822780|ref|YP_141221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus thermophilus CNRZ1066]
 gi|55738765|gb|AAV62406.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 828

 Score = 41.3 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         ++   R   T+ LA+       
Sbjct: 75  EIARTIFELIED--CIFVAHNVKFDANLLAEALFMEGFELRTPRV-DTVELAQVFYPTLE 131

Query: 107 -SALKAVGEALKLS 119
              L  +   L L 
Sbjct: 132 QYNLSYLSRVLNLD 145


>gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium
           prausnitzii L2-6]
          Length = 1417

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 37/151 (24%)

Query: 6   IDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVELWD--------------- 46
            D ET         LT+ G      +  V+      ++    +                 
Sbjct: 400 FDTETTGLDPGVEYLTEIGA-VIVRNGEVV------EEFDTFVKPGKPITSKITELTGIT 452

Query: 47  ---CVHDPVMPQVLKEALE--NTDVTIVAHNS-YFERTVL---KACFNLDIPIHRWICTL 97
                  P   + LK  L+  +  +  V HN+  F+   L        ++     +I TL
Sbjct: 453 NEMVADAPSEAEALKAFLDFVDGRIL-VGHNAHSFDIRFLRAAAKRSGIEFEPT-YIDTL 510

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
            +A++          G   K       E   
Sbjct: 511 TMAQAMYPGLHNYKQGTINKHLELPAYEAHR 541


>gi|195501501|ref|XP_002097822.1| GE26425 [Drosophila yakuba]
 gi|194183923|gb|EDW97534.1| GE26425 [Drosophila yakuba]
          Length = 900

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 20/158 (12%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L           ++D +       +L   L +     + H +  +   L+   +L + I 
Sbjct: 311 LVQMSTRSKD-YIFDTLILRDEMHILNLVLTDPKKLKILHGADLDIEWLQR--DLSLYIV 367

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T   A++      L  +  A  L          L     K         R  P   
Sbjct: 368 NMFDTHRAAKALN----LARLSLAYLLK-------HYLDLDVDKSLQLADWRMRPLP--- 413

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
              +   +Y + D      +++R+     ++     L 
Sbjct: 414 ---QQLVDYARQDTHFLIYVYERMTNDLLQQHADPGLL 448


>gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
 gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
          Length = 1499

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 27/143 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCVI-LFAFGFDDH--------------PVEL 44
            +  D ET     +    I   A   E+  +   F+   +                   +
Sbjct: 462 YVVFDLETTGFSPIKDKIIEIGAVKVENGKITERFSTFVNPKIPIPFRITQLTSITDQMV 521

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
            D      +     E + +    +VAHN+ F+   ++      ++         T+ +AR
Sbjct: 522 MDAPDIDTVLPQFLEFIGDA--VLVAHNASFDVGFIEQNCRYQDIVPNFTSV-DTVAMAR 578

Query: 102 SNGLPSA---LKAVGEALKLSSQ 121
                 +   L  V  AL +S +
Sbjct: 579 ILLPTLSKFKLNVVANALHISLE 601


>gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
 gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
          Length = 256

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALENTDVTI-VA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +      VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ + L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|90414417|ref|ZP_01222394.1| putative DNA polymerase III [Photobacterium profundum 3TCK]
 gi|90324530|gb|EAS41086.1| putative DNA polymerase III [Photobacterium profundum 3TCK]
          Length = 214

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 24/142 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKY----AEDVCVI---------LFAFG--FDDHPVELWDC 47
            + +DFET            +      E+  V+          F      + +     + 
Sbjct: 15  VIVLDFETTGLSPTQGDRAIEIGAVLMENGKVVDRFQKLMNPGFRVSSFIEGYTGITNNM 74

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIP---IHRWICTLVLARS 102
           +        + +   +   D  +VAHN+ F++  L A  ++ I       + C++++AR 
Sbjct: 75  LRTAAPCNEVMDQFTDFIGDYNLVAHNASFDKRFLDAELDI-IKRSYGGEFACSMLIARR 133

Query: 103 N---GLPSALKAVGEALKLSSQ 121
                    L ++     +   
Sbjct: 134 LYQNAPNHKLGSLVAYKNIDHD 155


>gi|289423581|ref|ZP_06425382.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289156083|gb|EFD04747.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 174

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 39/126 (30%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFG-FDDHPV----------------ELW 45
            + +D ET     L             +I           +                 + 
Sbjct: 10  YIVVDLETTGLDPLQGH---------EIIEIGVTEIKKGDITLNYSRLIKPKGIISSFIT 60

Query: 46  DCVH-------DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRW 93
           +  H            + +         D  ++AHN+ F+   L        L+ PI  +
Sbjct: 61  NLTHISNEMVEGEKTLEEVLPKFREYIGDSVLIAHNAKFDIPFLNYYLEKMGLE-PIKNY 119

Query: 94  ICTLVL 99
           ICTL +
Sbjct: 120 ICTLEM 125


>gi|255566405|ref|XP_002524188.1| 3'-5' exonuclease, putative [Ricinus communis]
 gi|223536557|gb|EEF38203.1| 3'-5' exonuclease, putative [Ricinus communis]
          Length = 977

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 43/177 (24%), Gaps = 30/177 (16%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            +D E  S                   L           L D +       +L     N 
Sbjct: 146 AVDTEQHSLRSFLGFTA----------LVQISTQKED-YLLDTIALHDAMGILGAVFANP 194

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKME 124
            +  V H    +   L+   +  I +     T                 +A ++ S+  +
Sbjct: 195 KICKVFHGGDNDILWLQR--DFHIYVVNLFDT----------------AKACEVLSKPQK 236

Query: 125 EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
               L+  +C   T++ L   +            +Y   D      I   L     +
Sbjct: 237 SLAYLLETYCGVSTNKLLQREDWRQRPLP-AEMLQYALTDAHYLLYIASCLIAELKQ 292


>gi|152978551|ref|YP_001344180.1| DNA polymerase III subunit epsilon [Actinobacillus succinogenes
           130Z]
 gi|150840274|gb|ABR74245.1| DNA polymerase III, epsilon subunit [Actinobacillus succinogenes
           130Z]
          Length = 259

 Score = 41.3 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 55/183 (30%), Gaps = 30/183 (16%)

Query: 1   MATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK- 58
           +  + +D ET                E   V L    +    + L+     P+ P+ +K 
Sbjct: 8   IRQIVLDTETTGMNQFGAHYEGHCIIEIGAVELINRKYTGRKLHLYVKPDRPIDPEAIKV 67

Query: 59  -----EALEN---------------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRW-- 93
                E L +                D  ++ HN+ F+   +       ++DI       
Sbjct: 68  HGITDEMLADKPDFSTVAQEFIDFIKDAELLIHNAPFDVGFMDYEFRKHHIDIKTADICT 127

Query: 94  -ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
              TL +AR         L A+ + L + + K      L+     G+ +  +        
Sbjct: 128 VTDTLQMARRQYPGKRNNLDALCDRLHIDNSKRTLHGALLDAEILGDVYLAMTGGQVSLF 187

Query: 151 REA 153
            E 
Sbjct: 188 AEE 190


>gi|325269989|ref|ZP_08136598.1| exonuclease [Prevotella multiformis DSM 16608]
 gi|324987712|gb|EGC19686.1| exonuclease [Prevotella multiformis DSM 16608]
          Length = 163

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 23/137 (16%)

Query: 5   FIDFET--RSPIDLTKCGICKYAEDVCVILFAFG-FDDHPVEL-WDC----------VHD 50
            IDFET       +   G+        ++   +      P    W C            D
Sbjct: 6   AIDFETANFERCSVCSVGV-VIVRGGEIVDTFYSLIQPEPNYYHWRCVQVHGLTCADTDD 64

Query: 51  PVMPQVLKEALE--NTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLA--RSN 103
             +   + + +E     + +VAHN+ F++  LKA F    +D P + +  TL  A  R  
Sbjct: 65  APVFSEVWKVIEPMIEGLPLVAHNAPFDKGCLKAAFYTYQMDYPDYEFFDTLKAARRRLP 124

Query: 104 GLP-SALKAVGEALKLS 119
            LP   L+ V       
Sbjct: 125 DLPDHQLQTVAAECGYD 141


>gi|323961899|gb|EGB57498.1| exonuclease [Escherichia coli H489]
          Length = 220

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 IALY 118


>gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
 gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
          Length = 1436

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPIDL---------TKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHD 50
             +  D ET     +          K       ++    +    F   +  + L    ++
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDEFEEFIDP-GFPLSETTINLTSITNE 477

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLV 98
                     +    +E  E+    IV HN  F+   +          +I  +  I TL 
Sbjct: 478 MVRGSLSEKEVFTKFREFYEDA--IIVGHNVTFDIGFMNTGYLRHGMEEIK-NPIIDTLT 534

Query: 99  LARSNGL---PSALKAVGEALKL 118
           LAR          L  + +   +
Sbjct: 535 LARFLYPTLKGYRLNTLAKKFNV 557


>gi|295106393|emb|CBL03936.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 1031

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 24/138 (17%)

Query: 2   ATLFIDFETRS---PIDLTKCGICKYAEDVCVI--LFAFGFDD----HPVELWDCVHDPV 52
             + +D ET       D          E   ++     F          V     +HD  
Sbjct: 46  NIVVVDTETTGFSFNHDELTQIAAARMEQGRIVDWFITFVNPGKPIPEDVAYLTDIHDED 105

Query: 53  MPQ---------VLKEALENTDVTIVAHNSYFERTVLKAC-FNLDIPIHRWICTLVLARS 102
           +            L E + +  +  VAHN+ F+RT          +  + WI +L LAR 
Sbjct: 106 VADAPLPSEALSELAEFVGDAKI--VAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLARI 163

Query: 103 NGL---PSALKAVGEALK 117
                    L  + +A  
Sbjct: 164 ALPRLKSHRLLDLVKAFG 181


>gi|194442926|ref|YP_002041143.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194401589|gb|ACF61811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 232

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDR----PITPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|167552492|ref|ZP_02346245.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|197251607|ref|YP_002146145.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197215310|gb|ACH52707.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205322894|gb|EDZ10733.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 232

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDR----PITPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|123441273|ref|YP_001005260.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088234|emb|CAL11023.1| DNA polymerase III, epsilon chain [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 238

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 42/148 (28%), Gaps = 31/148 (20%)

Query: 69  VAHNSYFERTVLK---ACFNLDIPIHRWICT----LVLARSNGLPS--ALKAVGEALKLS 119
           + HN+ F+   +         DIP     CT    L+LAR         L A+ +  ++ 
Sbjct: 79  IIHNAAFDIGFMDYEFRMLQQDIPKTETFCTITDSLLLARRLFPGKRNNLDALCDRYQID 138

Query: 120 SQKMEEGKELIARFCKGETHECL------------YDRNKPNHREAWRLFGE-------- 159
           + K      L+      E +  +             D+ +    E  +            
Sbjct: 139 NTKRTLHGALLDAEILAEVYLAMTGGQTSLSFSMEGDQTQNESSEDIQRITRPASGLKII 198

Query: 160 YCKGD--VTVTREIFKRLEPLSSKEQEL 185
           Y   D        +   ++   S    +
Sbjct: 199 YATEDEIAAHESRLDLVMKKGGSCLWRM 226


>gi|319898105|ref|YP_004136302.1| DNA polymerase iii epsilon subunit [Haemophilus influenzae F3031]
 gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031]
          Length = 256

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALENTDVTI-VA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +      VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ + L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
 gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
          Length = 1436

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 30/143 (20%)

Query: 2   ATLFIDFETRSPIDL---------TKCGICKYAEDVC--VILFAFGFDDHPVELWDCVHD 50
             +  D ET     +          K       ++    +    F   +  + L    ++
Sbjct: 419 KYVIFDVETTGLSAIYDKVIELSAVKMENGNVIDEFEEFIDP-GFPLSETTINLTSITNE 477

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLV 98
                     +    +E  E+    IV HN  F+   +          +I  +  I TL 
Sbjct: 478 MVRGSLSEKEVFTKFREFYEDA--IIVGHNVTFDIGFMNTGYLRHGMEEIK-NPIIDTLT 534

Query: 99  LARSNGL---PSALKAVGEALKL 118
           LAR          L  + +   +
Sbjct: 535 LARFLYPTLKGYRLNTLAKKFNV 557


>gi|262212369|gb|ACY35801.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R+  + S G+ +V ADL+GIE R+L+          A                +   
Sbjct: 10  PRFRALSLPSPGQVMVAADLSGIELRMLSHF-------PAKYDDGRYAGILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  +  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYAFLYGAGDEKIGHSYDKLLSSAKAKKKGKEIREAYIDAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLAAIKTASERGFIKAIDGRK 143


>gi|256827957|ref|YP_003156685.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577133|gb|ACU88269.1| Exonuclease RNase T and DNA polymerase III [Desulfomicrobium
           baculatum DSM 4028]
          Length = 177

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 23/148 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKY-AEDVCVI--LFA-----------FGFDDHPVELWDCV 48
            + IDFET      + C +     +   ++  L+            F  + H +   D  
Sbjct: 7   YVAIDFETADSCRDSACAVGLTKVQGGEIVDRLYGLIRPPRSRFSPFCVNVHGIHWSDVK 66

Query: 49  HDPVMPQVLKE---ALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLAR- 101
             P   +   E    LE  D    AHN+ F+R+VL AC     L  P   ++CT+ LAR 
Sbjct: 67  DAPAFREFWIENAGFLEGADFLA-AHNASFDRSVLGACCTMAGLPAPSLPFVCTVELARN 125

Query: 102 -SNGLPSALKAVGEALKLSSQKMEEGKE 128
             N  P+ L  V   L L       G +
Sbjct: 126 QWNLRPTKLPDVCRHLGLDLNHHHAGSD 153


>gi|168241502|ref|ZP_02666434.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194450291|ref|YP_002045931.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194408595|gb|ACF68814.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205339659|gb|EDZ26423.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 232

 Score = 41.3 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDR----PITPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|328874971|gb|EGG23336.1| hypothetical protein DFA_05468 [Dictyostelium fasciculatum]
          Length = 455

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 11/97 (11%)

Query: 26  EDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN 85
           ED  + L     +     L+       +P  L + L +  +  V H    +   L     
Sbjct: 312 EDPKISLIQLS-NGEYTALFRICKFEEIPDALVQLLTSRSILKVGHGLSKDANRLNKEQ- 369

Query: 86  LDIPIHRWICTLVLA-----RSNGLPSALKAVGEALK 117
             I +        LA           S    V   L 
Sbjct: 370 -KICMDGVDD---LAYHPVTYRCNPDSINDMVAMFLN 402


>gi|261417986|ref|YP_003251668.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus sp. Y412MC61]
 gi|319767201|ref|YP_004132702.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC52]
 gi|261374443|gb|ACX77186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC61]
 gi|317112067|gb|ADU94559.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y412MC52]
          Length = 909

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 39/147 (26%), Gaps = 31/147 (21%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHD----- 50
             + ID ET          + + G+    ED  ++  FA  F+                 
Sbjct: 4   RFVIIDLETTGNGPKKGDRIIQLGM-AVVEDGLIVERFASFFNPEQP--IPLFIQQLTNI 60

Query: 51  -PVMPQVLKEALENTD---------VTIVAHNSYFERTVLKACF---NLDIPIHRWICTL 97
              M +       +              VAHN  F+   L+A              I T+
Sbjct: 61  NEQMVEG-APLFADKAGEIAALMHGAYFVAHNVDFDLPFLQAELERAGWPPFAGPTIDTV 119

Query: 98  VLARSNGL---PSALKAVGEALKLSSQ 121
            LAR          L  +   L L   
Sbjct: 120 ELARIVLPTAESYKLGDLARQLGLRHD 146


>gi|282877400|ref|ZP_06286223.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           buccalis ATCC 35310]
 gi|281300452|gb|EFA92798.1| DNA polymerase III subunit epsilon domain protein [Prevotella
           buccalis ATCC 35310]
          Length = 194

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 27/140 (19%)

Query: 5   FIDFETRSPIDLTKCGICK-YAEDVCVI-LFAFGFDDHPVELWD--------CVHD---- 50
            IDFET +    + C +     E+  +   +      +P                D    
Sbjct: 35  AIDFETANSCRSSVCSVGVVIVENGKITDSYYHLIRPYPNYYHPRNIAVHGILPSDTQDA 94

Query: 51  ---PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNG 104
              P +   +   +    + +VAHN  F+ + LKACF    +    + + CTL+ +R   
Sbjct: 95  PTFPEVWAQIAPLI--KHLPLVAHNKAFDESCLKACFATYGMAYLNYPFYCTLIASRRVF 152

Query: 105 -----LPSALKAVGEALKLS 119
                    L  V   L  +
Sbjct: 153 CHHELANHQLHTVAAHLGYN 172


>gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187]
 gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1]
 gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
 gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           H3081.97]
 gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH187]
 gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
 gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
          Length = 315

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 26/161 (16%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++   + P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPQNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                +     L+ +   L +         + I      + 
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167


>gi|61394030|gb|AAX45625.1| DNA polymerase [Enterobacteria phage PR5]
          Length = 553

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 22/97 (22%)

Query: 2  ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKE 59
               DFET             +  D     F++GF +  +    W         +    
Sbjct: 12 KIAAFDFET-----------DPFKHDRIPKPFSWGFYNGEIYKDYW----GDDCIEQFIY 56

Query: 60 AL---ENTDVTIVAHNS-YFERTVLKACFNLDIPIHR 92
           L   E   V   AHN   F+   L   F   + I  
Sbjct: 57 WLDTIEEPHVI-YAHNGGKFDFLFLMKYFRGKLKIVN 92


>gi|16760829|ref|NP_456446.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765220|ref|NP_460835.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141480|ref|NP_804822.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62180453|ref|YP_216870.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|167993853|ref|ZP_02574946.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233692|ref|ZP_02658750.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168259853|ref|ZP_02681826.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168820696|ref|ZP_02832696.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194469318|ref|ZP_03075302.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197265660|ref|ZP_03165734.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200390618|ref|ZP_03217229.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|213419003|ref|ZP_03352069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213426806|ref|ZP_03359556.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213648159|ref|ZP_03378212.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213851907|ref|ZP_03381439.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|224583619|ref|YP_002637417.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238912063|ref|ZP_04655900.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289829019|ref|ZP_06546715.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25511843|pir||AB0741 exodeoxyribonuclease X (EC 3.1.11.-) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16420413|gb|AAL20794.1| DNA exonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16503126|emb|CAD05629.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137107|gb|AAO68671.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62128086|gb|AAX65789.1| DNA exonuclease X, degrades ss and ds DNA with 3'-5' polarity
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194455682|gb|EDX44521.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197243915|gb|EDY26535.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199603063|gb|EDZ01609.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205328180|gb|EDZ14944.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332278|gb|EDZ19042.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205342565|gb|EDZ29329.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205351180|gb|EDZ37811.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|224468146|gb|ACN45976.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247049|emb|CBG24868.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993856|gb|ACY88741.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158399|emb|CBW17906.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912871|dbj|BAJ36845.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320085616|emb|CBY95394.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321224521|gb|EFX49584.1| Exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322714928|gb|EFZ06499.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130162|gb|ADX17592.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988772|gb|AEF07755.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 232

 Score = 41.3 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDR----PITPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 719

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 43/145 (29%), Gaps = 32/145 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA- 60
             + +D ET    D+      +  +   V +     D+  V          +P+V     
Sbjct: 19  DVVVLDTETTGL-DVRH---DRIVQIGAVRMHGAEIDETAVFEVTVDPGIPIPEVASRIH 74

Query: 61  -LENTDV--------------------TIVAHNSYFERTVLKA---CFNLDIPIHRWICT 96
            L + DV                     +V H+ +F+  VL+             R +  
Sbjct: 75  GLADADVAGKPGLAAVMPDLVAFIGDAVVVGHSIHFDMAVLRHEAERHGFVWKEPRALDV 134

Query: 97  LVLARSNGLPS---ALKAVGEALKL 118
            ++A          +L ++   L +
Sbjct: 135 ALMAAGLDRELVDTSLDSLALGLGV 159


>gi|317048499|ref|YP_004116147.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
 gi|316950116|gb|ADU69591.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
          Length = 222

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           VAHN+ F+R +L           +WICT+ LAR                L   
Sbjct: 78  VAHNASFDRRML------PEMPGQWICTMTLARQLWPGQKYGNQALRHSLKLD 124


>gi|161613571|ref|YP_001587536.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|198244129|ref|YP_002215209.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|161362935|gb|ABX66703.1| hypothetical protein SPAB_01291 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197938645|gb|ACH75978.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622957|gb|EGE29302.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 232

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDR----PITPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|39996485|ref|NP_952436.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|39983365|gb|AAR34759.1| exonuclease [Geobacter sulfurreducens PCA]
 gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400]
          Length = 181

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFN 85
           D + D  +P+ +  AL +      +VAHN+ F+   L+  F 
Sbjct: 65  DMLADQPLPEEVYPALGDFIGTALLVAHNARFDLAFLRHEFG 106


>gi|297529654|ref|YP_003670929.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           C56-T3]
 gi|297252906|gb|ADI26352.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           C56-T3]
          Length = 909

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 39/147 (26%), Gaps = 31/147 (21%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHD----- 50
             + ID ET          + + G+    ED  ++  FA  F+                 
Sbjct: 4   RFVIIDLETTGNGPKKGDRIIQLGM-AVVEDGLIVERFASFFNPEQP--IPLFIQQLTNI 60

Query: 51  -PVMPQVLKEALENTD---------VTIVAHNSYFERTVLKACF---NLDIPIHRWICTL 97
              M +       +              VAHN  F+   L+A              I T+
Sbjct: 61  NEQMVEG-APLFADKAGEIAALMHGAYFVAHNVDFDLPFLQAELERAGWPPFAGPTIDTV 119

Query: 98  VLARSNGL---PSALKAVGEALKLSSQ 121
            LAR          L  +   L L   
Sbjct: 120 ELARIVLPTAESYKLGDLARQLGLHHD 146


>gi|224583693|ref|YP_002637491.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238912118|ref|ZP_04655955.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|224468220|gb|ACN46050.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 371

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFAAMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 122 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 165

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 166 TEAAGWLPAALDECRLMQQR 185


>gi|312599149|gb|ADQ91172.1| hypothetical protein BpV2_005c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 432

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 64/269 (23%), Gaps = 52/269 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV---CVILFAF---------------------- 35
           M  +  D ET                      ++  AF                      
Sbjct: 1   MNYISWDTETTGLPMGYTKSTPDNVHLFDRCRMLTLAFVKYSSKGRELSSYHGLVYPDTF 60

Query: 36  GFDDHPVELWDCVHDPVMPQ---------VLKEALENTDVTIVAHNSYFERTVLK---AC 83
                   +    H+  + +           KEA+ NT +  VAHNS F+          
Sbjct: 61  NVPQESTNVHGITHEHALHKGQPFGYVYAAFKEAVSNTSIL-VAHNSSFDENCFFSECYR 119

Query: 84  FNLDIPIHR---WICTLVLARSNGLP-SALKAVGEALKLSSQKMEEGKELIARFCKGETH 139
              D    +   ++ TL +ARS        K +         + +    L      G+ +
Sbjct: 120 RGFDTEPFKHVHFVDTLKMARSVLPGLHNHKLLTVYKYYFGHEFDAHDALNDSRACGKIY 179

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----FKRLEPLSSKEQELWYLDQTINDR 195
             L D                      +   I    +K+ + +       +         
Sbjct: 180 FLLRDNEFKMKDVGIEKVTLKA---SDIASIIGMNPYKKPKEVLDNLWAKY---APETFE 233

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELES 224
           G   +     T+ +    +    D E   
Sbjct: 234 GKTKEQEALDTIQKCDASKFLFKDAETYK 262


>gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
 gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
          Length = 1623

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 25/139 (17%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVI-LFAFGFDDH-PVEL---------WDC 47
            +  D ET         + + G  K  +D  V+  F+   +   P+            D 
Sbjct: 567 YVVFDIETTGLSKKHNKIIEIGAVK-VKDGEVVDTFSEFINPGVPIPYQIEQLTSINDDM 625

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
           V D  M  V+         D  +VAHN+ F+   +K       L    +  + T+ L+  
Sbjct: 626 VKDAPMYDVIVPRFVEFCGDDIVVAHNASFDTGFVKKNAEELGLRFD-NTVLDTMTLSHI 684

Query: 103 NGLPSA---LKAVGEALKL 118
                    L  V + LK+
Sbjct: 685 LLPELGKFTLDRVCKELKV 703


>gi|61393996|gb|AAX45594.1| DNA polymerase [Enterobacteria phage PR4]
          Length = 553

 Score = 41.3 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 22/97 (22%)

Query: 2  ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKE 59
               DFET             +  D     F++GF +  +    W         +    
Sbjct: 12 KIAAFDFET-----------DPFKHDRIPKPFSWGFYNGEIYKDYW----GDDCIEQFIY 56

Query: 60 AL---ENTDVTIVAHNS-YFERTVLKACFNLDIPIHR 92
           L   E   V   AHN   F+   L   F   + I  
Sbjct: 57 WLDTIEEPHVI-YAHNGGKFDFLFLMKYFRGKLKIVN 92


>gi|326623067|gb|EGE29412.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 371

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFAAMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 122 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 165

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 166 TEAAGWLPAALDECRLMQQR 185


>gi|261211353|ref|ZP_05925641.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260839308|gb|EEX65934.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 247

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 11/90 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSN 103
             +     + +      +VAHN+ F+   +   F              +   TL +A+  
Sbjct: 85  KEVHAEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGSSIGKTTDFCKVTDTLAMAKRI 142

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  L  + E   + +        L+ 
Sbjct: 143 FPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|256822066|ref|YP_003146029.1| hypothetical protein Kkor_0841 [Kangiella koreensis DSM 16069]
 gi|256795605|gb|ACV26261.1| conserved hypothetical protein [Kangiella koreensis DSM 16069]
          Length = 255

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 45/219 (20%)

Query: 1   MATLFIDFET---------------RSPIDLTKCGIC-KYAEDV---------CVILFAF 35
           M     D ET                S  D+       +Y +            V+  + 
Sbjct: 1   MNIFVFDIETIPDIETGRLLNEFEGLSDEDVVTAMEHLRYQQTGNTFQPLYLQKVVAISA 60

Query: 36  GFDDHPV-ELWDCVHDPVMPQVLKEALENT----DVTIVAHNSY-FERTVLK-ACFNLDI 88
            F       +W    +    + + +   +       TIV+ N   F+  VL       +I
Sbjct: 61  VFRHGDKLTVWSLGDEQADEKEIIQRFFDGIDRFTPTIVSWNGSGFDLPVLHYRAMKHNI 120

Query: 89  PIHRWICTLVL----------ARSNGLPSALKAVGEALK-LSSQKMEEGKELIARFCKGE 137
              ++  T  +          +R +     L  V  +    ++  +++   ++    K  
Sbjct: 121 AAPKYWDTGEMDSQFKWNNYISRYHSRHLDLMDVIASYNPRANAPLDKIASMLGYPGKM- 179

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                    +  H+   +   +YC+ DV  T  ++ R E
Sbjct: 180 -GMSGAKVWETFHQGNLKAIRDYCETDVLNTYLVYLRFE 217


>gi|227112969|ref|ZP_03826625.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 245

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 47/167 (28%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     L       + E   +I      +                     D 
Sbjct: 7   RQIVLDTETTGMNML-----GVHYEGHKIIEIG-AVEVINRRLTGRHFHVYIKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-----LKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPI 90
                  + D  +        + +   +      +V HN+ F+   +       N D+P 
Sbjct: 61  EAYNVHGISDEFLADKPTYADIVDDFLDFIRGAELVIHNATFDIGFMDYEFRLLNRDLPK 120

Query: 91  HRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                    +L++AR        +L A+ +  ++ + K      L+ 
Sbjct: 121 TETFCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLD 167


>gi|320085676|emb|CBY95454.1| RNase D, processes tRNA precursor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 371

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFAAMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 122 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 165

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 166 TEAAGWLPAALDECRLMQQR 185


>gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42]
 gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42]
          Length = 1437

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL-- 105
            + +  KE + +    +VAHN+ F+   L    K     +   +  I TL LAR      
Sbjct: 488 DVVRDFKEWIGDD--VLVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEF 545

Query: 106 -PSALKAVGEALKLS 119
               L  + +   + 
Sbjct: 546 KNHRLNTLCKKFDIE 560


>gi|61393928|gb|AAX45532.1| DNA polymerase [Enterobacteria phage L17]
          Length = 553

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 22/97 (22%)

Query: 2  ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKE 59
               DFET             +  D     F++GF +  +    W         +    
Sbjct: 12 KIAAFDFET-----------DPFKHDRIPKPFSWGFYNGEIYKDYW----GDDCIEQFIY 56

Query: 60 AL---ENTDVTIVAHNS-YFERTVLKACFNLDIPIHR 92
           L   E   V   AHN   F+   L   F   + I  
Sbjct: 57 WLDTIEEPHVI-YAHNGGKFDFLFLMKYFRGKLKIVN 92


>gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM
           7]
 gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208]
 gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1437

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL-- 105
            + +  KE + +    +VAHN+ F+   L    K     +   +  I TL LAR      
Sbjct: 488 DVVRDFKEWIGDD--VLVAHNASFDMGFLNVAYKRLLKTEKAKNPVIDTLELARFLYPEF 545

Query: 106 -PSALKAVGEALKLS 119
               L  + +   + 
Sbjct: 546 KNHRLNTLCKKFDIE 560


>gi|241767097|ref|ZP_04764869.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
 gi|241362329|gb|EER58323.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
           2AN]
          Length = 153

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 69  VAHNSYFERTVLKACFNL-DIP-IHRWICTLVLARSN---GLPSALKAVGEALKLS 119
           VAHN+ F+R   +A   L  +P  H + CT++L+R          L  + +   L 
Sbjct: 88  VAHNAAFDRKFWQAELALAGLPAPHPFACTVLLSRRLYPQAPSHKLGMLVDYHGLP 143


>gi|229018800|ref|ZP_04175648.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
 gi|229025042|ref|ZP_04181470.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228736248|gb|EEL86815.1| DNA polymerase III alpha subunit [Bacillus cereus AH1272]
 gi|228742492|gb|EEL92644.1| DNA polymerase III alpha subunit [Bacillus cereus AH1273]
          Length = 315

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 51/162 (31%), Gaps = 44/162 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHP-----VELW----DCVH-- 49
             + IDFET         G   Y  +  +I  A   + +H      V          +  
Sbjct: 9   DYVVIDFETT--------GFNPY--NDKIIQVAAVKYHNHELVDQFVSYVNPERPIPNRI 58

Query: 50  ------------DPVMPQVLKE---ALENTDVTIVAHNSYFERTVLK---ACFNLDIPIH 91
                       D    + +     A  +T+V  VAHN+ F+   LK       L  P +
Sbjct: 59  TSLTGITNYRVSDAPTIEEVLPFFLAFLHTNVI-VAHNASFDMRFLKSNVNMLGLPEPKN 117

Query: 92  RWICTLVLA--RS-NGLPSALKAVGEALKLSSQKMEEGKELI 130
           + I T+ LA     +     L+ +   L +         + I
Sbjct: 118 KVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCI 159


>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
 gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1433

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 56/196 (28%), Gaps = 39/196 (19%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVI-LFAFGFDDH---PVELW-------- 45
             +  D ET         +T+ G  K   +  ++  F+   +     P  +         
Sbjct: 421 DFVVFDIETTGLNPQQDRITEIGAVK-VRNGQIVDRFSAFVNPGVSIPSFIVKLTGITND 479

Query: 46  ---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
              D      +     E ++     +VAHN+ F+   +K         +  + ++ TL L
Sbjct: 480 MVKDAPPIEQVLNEFMEFIQ--GSVLVAHNANFDVGFIKHNAKIIGEKVK-NPYLDTLEL 536

Query: 100 ARSNGLP---SALKAVGEALKLS--------SQKMEEGKELIARFCKGETHECLYDRNK- 147
            R          L  V + LK+            M   K  I    + +   C   ++  
Sbjct: 537 CRKMFPELGRYKLNIVAKHLKIELENHHRAVDDSMATAKIFIHCLNELKEKGCKNIKDIQ 596

Query: 148 -PNHREAWRLFGEYCK 162
                E       Y  
Sbjct: 597 NAFDGEVNLKASSYHA 612


>gi|154247607|ref|YP_001418565.1| exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
 gi|154161692|gb|ABS68908.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter
           autotrophicus Py2]
          Length = 200

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 56/213 (26%), Gaps = 56/213 (26%)

Query: 3   TLFIDFETRSPID------------LTKCGICKYAEDVC-VILFAFGFDDHPVELWDCVH 49
            LF D ET    D            + +       +D   +  F+F  D    +  +   
Sbjct: 2   ILFWDTETTGFFDDRLPVDHKAQPYIVQLAAQLCEDDGRPIAGFSFIIDPGIGDGINIPE 61

Query: 50  DPVMPQVL------------------KEALENTDVTIVAHNSYFERTV----LKACFNLD 87
                  +                     L      + AHN+ F++ V    +   +   
Sbjct: 62  RAAAVHGITNERAVQFGVSTEFALSAFTHLYQRADMVCAHNAKFDKGVTETAISRHYGRV 121

Query: 88  IPI-HRWICTL-VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDR 145
           +P+     CT+        LP        A   +  K  + +E I  F            
Sbjct: 122 MPLRKPVFCTMESATPIINLPPT--DRMRAAGFNKPKPPKLEECIRHFFG---------- 169

Query: 146 NKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                 E      +    DV   R ++  L+ +
Sbjct: 170 ------EDLDGAHD-AMVDVAACRRVYFHLKSM 195


>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
 gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium
           thermocellum ATCC 27405]
          Length = 1442

 Score = 41.3 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 23/138 (16%)

Query: 4   LFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCV-------- 48
           +  D ET         +T+ G  K  E   V  F+   +     P  +            
Sbjct: 430 VVFDIETTGLSADKDKITEIGAVKIKEGKIVDTFSTFVNPEIPIPEFVVKLTGITDDMVS 489

Query: 49  HDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNG 104
             P + +VL E LE      +VAHN+ F+   +       N ++  +  I TL L+R   
Sbjct: 490 DAPTIDKVLPEFLEFVGTSPLVAHNAVFDTGFIRHNARLINRNVD-NPVIDTLELSRQMF 548

Query: 105 LP---SALKAVGEALKLS 119
                  L  V + L +S
Sbjct: 549 PELKKHKLDVVAKHLGVS 566


>gi|157145382|ref|YP_001452701.1| exodeoxyribonuclease X [Citrobacter koseri ATCC BAA-895]
 gi|157082587|gb|ABV12265.1| hypothetical protein CKO_01122 [Citrobacter koseri ATCC BAA-895]
          Length = 220

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 12/64 (18%)

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDIIPLYHGSEWYVAHNASFDRRVL------PEMPGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|41582248|gb|AAR37708.2| ribonuclease D, putative [uncultured marine bacterium 441]
          Length = 177

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 49/171 (28%), Gaps = 30/171 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E           +  Y     + L      D  +E  D +    +   L   L  
Sbjct: 34  LAIDTE--------FRRVDSYL--PELCLIQIATKD-KLECIDVLSLDNL-DPLFVKLYG 81

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                +AH++  +   L    +  IP      T + A     P         L++S Q +
Sbjct: 82  KKTKWIAHSARQDIEAL-YSLSNQIP-SAIFDTQIAASFLNYP---------LQISYQNL 130

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            E  E +    K    +    R  P          +Y   DV     I  +
Sbjct: 131 TESLENVRLEKKFTRFDWK-KRPLP------ADVLQYAIDDVKYLIPIHNK 174


>gi|61393961|gb|AAX45563.1| DNA polymerase [Enterobacteria phage PR3]
          Length = 553

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 22/97 (22%)

Query: 2  ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKE 59
               DFET             +  D     F++GF +  +    W         +    
Sbjct: 12 KIAAFDFET-----------DPFKHDRIPKPFSWGFYNGEIYKDYW----GDDCIEQFIY 56

Query: 60 AL---ENTDVTIVAHNS-YFERTVLKACFNLDIPIHR 92
           L   E   V   AHN   F+   L   F   + I  
Sbjct: 57 WLDTIEEPHVI-YAHNGGKFDFLFLMKYFRGKLKIVN 92


>gi|9626351|ref|NP_040682.1| DNA polymerase [Enterobacteria phage PRD1]
 gi|118850|sp|P10479|DPOL_BPPRD RecName: Full=DNA-directed DNA polymerase; AltName: Full=Protein
          P1
 gi|215752|gb|AAA32450.1| DNA polymerase [Enterobacteria phage PRD1]
 gi|215761|gb|AAA32452.1| DNA polymerase [Enterobacteria phage PRD1]
 gi|61394103|gb|AAX45903.1| DNA polymerase [Enterobacteria phage PRD1]
          Length = 553

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 22/97 (22%)

Query: 2  ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKE 59
               DFET             +  D     F++GF +  +    W         +    
Sbjct: 12 KIAAFDFET-----------DPFKHDRIPKPFSWGFYNGEIYKDYW----GDDCIEQFIY 56

Query: 60 AL---ENTDVTIVAHNS-YFERTVLKACFNLDIPIHR 92
           L   E   V   AHN   F+   L   F   + I  
Sbjct: 57 WLDTIEEPHVI-YAHNGGKFDFLFLMKYFRGKLKIVN 92


>gi|297571370|ref|YP_003697144.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595]
 gi|296931717|gb|ADH92525.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595]
          Length = 398

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 51/196 (26%), Gaps = 37/196 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENT 64
            +D E          GI +Y+    ++          + L D +        L   + + 
Sbjct: 41  AVDTE-------RAMGI-RYSNRAYLV--QIKRAGSGIVLLDPIGIEDRLGDLATIMHDE 90

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAV-GEALKLSSQK 122
               + H +  +   L+    L +       T +     G    +L+++  E L     K
Sbjct: 91  ---WILHAADQDLPCLRE---LGLEPSNVFDTELAGLILGYDRVSLQSMIAEELGFVLAK 144

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                +  AR    E                      Y   DV +  E+ + L     + 
Sbjct: 145 EHSDADWSARPLGPE-------------------LRAYAALDVDLLIELRESLTGKLKEA 185

Query: 183 QELWYLDQTINDRGYC 198
               +      +    
Sbjct: 186 GRYEWFLSECEEVRRR 201


>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           2360]
 gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           2360]
 gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
           1313]
          Length = 1442

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 23/138 (16%)

Query: 4   LFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCV-------- 48
           +  D ET         +T+ G  K  E   V  F+   +     P  +            
Sbjct: 430 VVFDIETTGLSADKDKITEIGAVKIKEGKIVDTFSTFVNPEIPIPEFVVKLTGITDDMVS 489

Query: 49  HDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNG 104
             P + +VL E LE      +VAHN+ F+   +       N ++  +  I TL L+R   
Sbjct: 490 DAPTIDKVLPEFLEFVGTSPLVAHNAVFDTGFIRHNARLINRNVD-NPVIDTLELSRQMF 548

Query: 105 LP---SALKAVGEALKLS 119
                  L  V + L +S
Sbjct: 549 PELKKHKLDVVAKHLGVS 566


>gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
 gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
          Length = 1113

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|41323051|gb|AAR99740.1| DNA polymerase [Enterobacteria phage PR772]
 gi|61394066|gb|AAX45656.1| DNA polymerase [Enterobacteria phage PR772]
          Length = 553

 Score = 41.3 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 22/97 (22%)

Query: 2  ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVMPQVLKE 59
               DFET             +  D     F++GF +  +    W         +    
Sbjct: 12 KIAAFDFET-----------DPFKHDRIPKPFSWGFYNGEIYKDYW----GDDCIEQFIY 56

Query: 60 AL---ENTDVTIVAHNS-YFERTVLKACFNLDIPIHR 92
           L   E   V   AHN   F+   L   F   + I  
Sbjct: 57 WLDTIEEPHVI-YAHNGGKFDFLFLMKYFRGKLKIVN 92


>gi|291279025|ref|YP_003495860.1| hypothetical protein DEFDS_0623 [Deferribacter desulfuricans SSM1]
 gi|290753727|dbj|BAI80104.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 247

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 35/146 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAE----DVCVILFA-------FGFDDHPVELWDCVHD 50
               ID ET    D     +   A     +  ++              +  ++      D
Sbjct: 62  KFCVIDTETTGL-DFETAKLINIAAVKVVNFKILDIYDVFINPEIPIPEESIKWHGITDD 120

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTL- 97
                     +     + + ++ +  V H+  F+  +    LK  +  +I  + WI T+ 
Sbjct: 121 MVKDKPTVAEILPDFLKFIRDSVI--VGHHVNFDLKMINKDLKLYYGSEIK-NIWIDTMF 177

Query: 98  -----VLARSNGLPSALKAVGEALKL 118
                +L R      +L  + E   +
Sbjct: 178 LYSKNILCR--DDHISLDFLLEKFNV 201


>gi|262212263|gb|ACY35748.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 9/103 (8%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMA-GEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423
           RS    S+    V +D +G E R L            A E       T  A  +      
Sbjct: 13  RSLFEPSDNHLQVGSDASGPELRCLGHYLSRYDGGKFAEEVVNGDIHTALAGIYGTD--- 69

Query: 424 VTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
                R  GK +   L Y GG       A  +  + +     +
Sbjct: 70  -----RKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 107


>gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 1407

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 27/135 (20%)

Query: 6   IDFETRSPIDLT---------KCGICKYAEDVCV-----ILFAFGF-----DDHPVELWD 46
            D ET    ++          K    K  +         I  +  F           + D
Sbjct: 397 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPIS-SFITKLTGIDESMVKD 455

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICTLVLARSNG 104
                 +     E   +  V  VAHN+ F+ + +K      ++ ++   + TL L+R   
Sbjct: 456 APSIEEILPKFLE-FASNSVL-VAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRHLY 513

Query: 105 ---LPSALKAVGEAL 116
                  L  + E L
Sbjct: 514 KDLKNYKLDTLAEHL 528


>gi|238755743|ref|ZP_04617076.1| DNA polymerase II [Yersinia ruckeri ATCC 29473]
 gi|238706035|gb|EEP98419.1| DNA polymerase II [Yersinia ruckeri ATCC 29473]
          Length = 744

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 8/88 (9%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC---VHDPVMPQVLK 58
             L +D ET    +L   G+        V +      D   + +D       P++ + L 
Sbjct: 111 KLLSLDIETSEHGELYCIGLQG-CGQRQVYMLGPPNGDDQPQDFDLEYVPSRPLLLEKLN 169

Query: 59  EALE--NTDVTIVAHNS-YFERTVLKAC 83
           + LE  + D   +  N   F+  VL+  
Sbjct: 170 QWLEQHDPDAI-IGWNLVQFDLRVLQKH 196


>gi|205357371|ref|ZP_02347252.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205322073|gb|EDZ09912.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 375

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFAAMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 126 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 169

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 170 TEAAGWLPAALDECRLMQQR 189


>gi|195873245|ref|ZP_02696622.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195634367|gb|EDX52719.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 375

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFAAMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 126 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 169

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 170 TEAAGWLPAALDECRLMQQR 189


>gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514]
 gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1407

 Score = 41.3 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 27/135 (20%)

Query: 6   IDFETRSPIDLT---------KCGICKYAEDVCV-----ILFAFGF-----DDHPVELWD 46
            D ET    ++          K    K  +         I  +  F           + D
Sbjct: 397 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPIS-SFITKLTGIDESMVKD 455

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICTLVLARSNG 104
                 +     E   +  V  VAHN+ F+ + +K      ++ ++   + TL L+R   
Sbjct: 456 APSIEEILPKFLE-FASNSVL-VAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRHLY 513

Query: 105 ---LPSALKAVGEAL 116
                  L  + E L
Sbjct: 514 KDLKNYKLDTLAEHL 528


>gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
          Length = 247

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSN 103
             + +   + +      +VAHN+ F+   +   F              +   TL +A+  
Sbjct: 85  KDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFCKVTDTLAMAKRI 142

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  L  + E   + +        L+ 
Sbjct: 143 FPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
          Length = 247

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSN 103
             + +   + +      +VAHN+ F+   +   F              +   TL +A+  
Sbjct: 85  KDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFCKVTDTLAMAKRI 142

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  L  + E   + +        L+ 
Sbjct: 143 FPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|198244835|ref|YP_002215323.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197939351|gb|ACH76684.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 375

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFAAMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 126 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 169

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 170 TEAAGWLPAALDECRLMQQR 189


>gi|168238504|ref|ZP_02663562.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735808|ref|YP_002114913.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204930999|ref|ZP_03221825.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194711310|gb|ACF90531.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288686|gb|EDY28061.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204320043|gb|EDZ05248.1| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322616877|gb|EFY13785.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618116|gb|EFY15008.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625787|gb|EFY22606.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626239|gb|EFY23049.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632652|gb|EFY29397.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638997|gb|EFY35690.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640437|gb|EFY37090.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644201|gb|EFY40746.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649525|gb|EFY45957.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655432|gb|EFY51740.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660811|gb|EFY57042.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662892|gb|EFY59099.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668077|gb|EFY64236.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674164|gb|EFY70258.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675483|gb|EFY71557.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683103|gb|EFY79119.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686797|gb|EFY82775.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195312|gb|EFZ80492.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199204|gb|EFZ84299.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202983|gb|EFZ88016.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207461|gb|EFZ92409.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213958|gb|EFZ98726.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217444|gb|EGA02163.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219962|gb|EGA04435.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323231467|gb|EGA15580.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235907|gb|EGA19986.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240478|gb|EGA24521.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245369|gb|EGA29369.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246734|gb|EGA30706.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253590|gb|EGA37418.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255358|gb|EGA39128.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260250|gb|EGA43871.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266842|gb|EGA50328.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269048|gb|EGA52504.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 232

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDR----PITPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|62180380|ref|YP_216797.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194734944|ref|YP_002114851.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197248423|ref|YP_002146207.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197301010|ref|ZP_02662940.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|205360221|ref|ZP_02681919.2| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|62128013|gb|AAX65716.1| RNase D, processes tRNA precursor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194710446|gb|ACF89667.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197212126|gb|ACH49523.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197289302|gb|EDY28669.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|205350690|gb|EDZ37321.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|322714855|gb|EFZ06426.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 375

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFAAMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 126 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 169

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 170 TEAAGWLPAALDECRLMQQR 189


>gi|29899116|ref|NP_829893.1| type B DNA polymerase [Bacillus cereus ATCC 14579]
 gi|29899079|gb|AAP12349.1| type B DNA polymerase [Bacillus cereus ATCC 14579]
          Length = 729

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 41/186 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ETR              +   V LF     D          D ++   + +  
Sbjct: 14  KLLTLDTETRGLT----------GDVFRVGLF-----DGENYYVANTFDEIL--NIFDQY 56

Query: 62  ENTDVTIVAHNSYF------------ERTVLKACFNLDIPIHRWI-CTLVLA-RSNGLPS 107
           +N +  +  HN  F            +R        ++  +      +++L      LP 
Sbjct: 57  KNYECHVYVHNLDFDLGKIATTLFTRDRVCFAKSIFINGNVVTLHADSMILHDSLRLLPG 116

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFC----------KGETHECLYDRNKPNHREAWRLF 157
            L+ + +   L+    ++  +++                      Y  N P        +
Sbjct: 117 TLEKLCKDFGLTDNAKKDLSDIMKEQGYAIYNADGSFNKRKSLGNYFENVPADDPTLNEY 176

Query: 158 GEYCKG 163
            EY   
Sbjct: 177 LEYDCR 182


>gi|37524935|ref|NP_928279.1| DNA polymerase III subunit epsilon [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784361|emb|CAE13238.1| DNA polymerase III epsilon chain [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 248

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 47/167 (28%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQVVLDTETTG---MNKLGVHY--EGHKIIEIG-AVEVINRRLTGRHFHVYIQPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-LKEALENTDVTIV------AHNSYFERTVLKACFN---LDIPI 90
                  + D  +    L   + +  +  +       HN+ F+   +   F     DIP 
Sbjct: 61  EAFEVHGISDEFLQDKPLFADIADEFIEFIRGAELIIHNAPFDIGFIDYEFGKLNRDIPP 120

Query: 91  H----RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                +   +L LAR         L A+ +   + + K      L+ 
Sbjct: 121 TADFCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLD 167


>gi|205352517|ref|YP_002226318.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205359829|ref|ZP_02832566.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|207856676|ref|YP_002243327.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205272298|emb|CAR37177.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205342684|gb|EDZ29448.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206708479|emb|CAR32800.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627575|gb|EGE33918.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 375

 Score = 41.3 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFAAMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 126 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 169

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 170 TEAAGWLPAALDECRLMQQR 189


>gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
 gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
          Length = 1504

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 55/219 (25%), Gaps = 26/219 (11%)

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTL-VLAR 101
             ++  + +VL   LE      +VAHN+ F+   +        L       I TL +   
Sbjct: 471 VENEKTIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLNIARY 530

Query: 102 SNGLPSALKAVGEAL-----KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                +  K            +   K    K L   F                      +
Sbjct: 531 FYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEAH------------HRAI 578

Query: 157 FGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
           +  Y   +V +   +    +       EL           + +    A  L Q    E  
Sbjct: 579 YDAYATAEVFLNM-LQDFYKEEIYSYFELQASLDMNEVWRHPI-PKYATVLAQ--TQEGY 634

Query: 217 KLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLT 255
           K   +L S                 +L    GL +   T
Sbjct: 635 KNLFKLVSDALTTHFDGGPRLLKSAFLKYREGLLIGSGT 673


>gi|94496850|ref|ZP_01303425.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Sphingomonas sp. SKA58]
 gi|94423863|gb|EAT08889.1| DNA polymerase III epsilon subunit and related 3'-5' exonuclease
           [Sphingomonas sp. SKA58]
          Length = 312

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 23/115 (20%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDV--CVILFAFG--FDDHPVELWDCV------- 48
           + +D ET         + +  + ++  D    VI       + + P    D         
Sbjct: 67  VAVDVETTGLDRETDRIIELAVQRFRFDALGRVIQVGVPRVWREDPGIPIDLRITKLTGL 126

Query: 49  -----HDPVMPQ-VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
                   V+ +    E L + D+  VAHN+ F+R  +       I    W C++
Sbjct: 127 MADDLAGQVIDETAAVEILSSADII-VAHNAAFDRPFIDRRLP-AIAGKPWACSM 179


>gi|42518811|ref|NP_964741.1| hypothetical protein LJ0886 [Lactobacillus johnsonii NCC 533]
 gi|41583097|gb|AAS08707.1| hypothetical protein LJ_0886 [Lactobacillus johnsonii NCC 533]
          Length = 177

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI-----LF--AFGFDDHPVELW-----DC 47
           M    +DFET +    + C +      +  ++     +      FD   +++      D 
Sbjct: 1   MNFTAMDFETANSHPESACSLALVMVRNNEIVDRFYTVINPQMPFDGRNIKIHGITAEDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHN+ F+  V++     +N+  P +  I TL  +++
Sbjct: 61  KNAPTMAEVWPKIKKLYQPGMLVAAHNARFDCRVMEKSLARYNIPAPHYFAIDTLATSKA 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V EAL ++
Sbjct: 121 FEPYLPNHKLDTVSEALNIN 140


>gi|241956434|ref|XP_002420937.1| DNA polymerase gamma subunit, putative; mitochondrial DNA
           polymerase catalytic subunit, putative [Candida
           dubliniensis CD36]
 gi|223644280|emb|CAX41091.1| DNA polymerase gamma subunit, putative [Candida dubliniensis CD36]
          Length = 1329

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 59/508 (11%), Positives = 135/508 (26%), Gaps = 75/508 (14%)

Query: 155 RLFGEYCKGDVTVTR--EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVD 212
            LF      ++ +T    I   L  L  +   L+++D          D    + ++++ +
Sbjct: 524 ELFKTSKGEEMNLTLKTRITPLLLRLKWEGHPLFWVDSQGWCFKVPFDDD--NEISRLTE 581

Query: 213 VERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQ 272
            +  +       LT   ++ +R +   K   ++   +   +   + C  +LS       +
Sbjct: 582 KKYVQ-----PKLTEEEINQTRDVLLTKGKSYILFKVPHPNGPSSRCTHILSKLYVRNFE 636

Query: 273 AIQVFNNRMRASRSAVLKLNT--LVEAMNSDGRLRGTLQFLGASRTG--RWSGCVFPPQN 328
              + +    A++   L       +   N           LG ++               
Sbjct: 637 DGTLTSEYDYATKILNLNNEASYWLGNRNRIKDQFVVYNQLGKNKFFDTIKESKEHSSMG 696

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           +  P+ +            T +T+       I   ++S + A +G   V AD        
Sbjct: 697 IIIPNLATMGTITRRATENTWLTASNAKKNRIGSELKSLIEAPKGYCFVGAD-------- 748

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAF 448
                  +    A   G+ +       +      +  K Q+                   
Sbjct: 749 ----VDSEELWIASLVGDSMLQIHGGTALGWMTLEGEKSQKTDLHSKT------------ 792

Query: 449 QKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKK 508
              AS  G++ N               + A    +                    ++V +
Sbjct: 793 ---ASILGISRNDAKVFNYGRIYGAGVKFATRLLKQ---------FNGNITDEEADKVAR 840

Query: 509 AWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSL 568
                    + +   L             I       +    ++          P   + 
Sbjct: 841 QLYDSTKGRTAMTKYL----------PSKIYYGGTESIMFNTLEAIAQQEEPKTPVLGAS 890

Query: 569 VYRDVGNNRSYLNTTTRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGY 622
           +   +       N           Y        +Q+   D   +L   M   +       
Sbjct: 891 ITDALNVKNLNTNQ----------YMTSRVNWTIQSSGVDYLHLLIISMEYLIEKYGIEA 940

Query: 623 DIVLTVHDEIVCETPDTDEFNASMLYHL 650
            + +TVHDE+     +TD++ A++L  +
Sbjct: 941 RLAITVHDELRYLVKETDKYKAALLLQI 968


>gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
 gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
 gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
 gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
          Length = 256

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALENT---------------DVTIVAHNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +                   ++ HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ + L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
 gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
 gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
 gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
 gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
 gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
 gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
 gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
 gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 247

 Score = 41.3 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSN 103
             + +   + +      +VAHN+ F+   +   F              +   TL +A+  
Sbjct: 85  KDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFCKVTDTLAMAKRI 142

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  L  + E   + +        L+ 
Sbjct: 143 FPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956]
 gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 1447

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 43/158 (27%), Gaps = 28/158 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCVI---------LFAFG--FDDHPVELWDCV 48
            +  D ET     +    I   A   +D  V+          F              D V
Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDHFDQFIDPGFHLSEQTTALTSITDDMV 486

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARS 102
                 + + +  ++      +  HN  F+   +    +      I     I TL LAR 
Sbjct: 487 QGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYERHGMGQIK-QPVIDTLPLARF 545

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
                    L  + +  K+S     E   L +   +  
Sbjct: 546 LHPDFRGYRLNTLSKRFKVSL----EHHHLASYDSEAT 579


>gi|170050482|ref|XP_001861331.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167872069|gb|EDS35452.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 708

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 15/96 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCV-HDPVMPQV-LKEA 60
            +  D E    I+L   G         + +   G       ++D      ++P   +K+ 
Sbjct: 606 VISFDCE---GINLGVRG--------QITMIQLGTTRGEAFIFDVATCPDMVPHGGIKQV 654

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           LE   V  V H+   +   L   F + +       T
Sbjct: 655 LEAEKVIKVIHDCRNDSVNLYNQFQIMLR--NVFDT 688


>gi|326795402|ref|YP_004313222.1| DNA polymerase B region [Marinomonas mediterranea MMB-1]
 gi|326546166|gb|ADZ91386.1| DNA polymerase B region [Marinomonas mediterranea MMB-1]
          Length = 801

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 58/215 (26%), Gaps = 63/215 (29%)

Query: 2   ATLFIDFETR-SPIDLTKCGICKYAEDVCVILFAFGFDDHP-----VELWDCVHDPVMPQ 55
               +D ET  S  +L   GI            AF   D P        +    +  +  
Sbjct: 151 KVWSLDIETSVSRNELLSVGIVSQTNQ-----IAFVVSDKPQDVPNTYFFP--DEQHLLL 203

Query: 56  VLKEALE--NTDVTIVAHN-SYFERTVLKA---CFNLD---------------------- 87
            L +  +  N D+  +  N   F+   L        +                       
Sbjct: 204 ALIKFFKRHNPDII-IGWNVIGFDLLFLDKRCKFLGIKPAFGALGEAWSIRTVEGKGKYF 262

Query: 88  --IPIHRWIC--TLV--LARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHEC 141
             IP    +   TL+           +L +V ++L L   K+  G +      +      
Sbjct: 263 ATIPGRVVLDGITLLKVGGYQFD-SYSLNSVSKSL-LDDGKLIHGGDRWQEIERL----- 315

Query: 142 LYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                   H E    F  Y   D  + + IF +L 
Sbjct: 316 --------HAEEMEQFVAYNLQDCELVKRIFDKLN 342


>gi|317051081|ref|YP_004112197.1| 3'-5' exonuclease [Desulfurispirillum indicum S5]
 gi|316946165|gb|ADU65641.1| 3'-5' exonuclease [Desulfurispirillum indicum S5]
          Length = 213

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 49/182 (26%), Gaps = 31/182 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L  D ETR      + G           L       + V L+       +P  L E   
Sbjct: 52  VLGFDTETR---PTFRKGQFFLPS-----LIQLAT-HNHVYLFQISRF-NLPAGLLEIFS 101

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           +  +  V     ++   L+     D     ++   +             +   L +    
Sbjct: 102 SQHIVKVGAGLNYDVKQLQQIAAFD--EQSFVD--IAH-----------LATRLGIKQTG 146

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSK 181
           +     L+              R     R+       +Y   D  ++RE++  L  L  K
Sbjct: 147 LRTLCALL-----FGKRLSKKARCSDWSRKHLSAEQIKYAAADAWISRELYMALNSLLEK 201

Query: 182 EQ 183
           + 
Sbjct: 202 QN 203


>gi|213586553|ref|ZP_03368379.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 165

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 50/178 (28%), Gaps = 40/178 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +   +++ +       +  +                    EY   DV     I K+L 
Sbjct: 122 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLM 163


>gi|153808149|ref|ZP_01960817.1| hypothetical protein BACCAC_02435 [Bacteroides caccae ATCC 43185]
 gi|149129052|gb|EDM20268.1| hypothetical protein BACCAC_02435 [Bacteroides caccae ATCC 43185]
          Length = 200

 Score = 41.3 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 27/144 (18%)

Query: 1   MATLF-IDFETRSPIDLTKCGICK-YAEDVCVI-----LFAFGFDDHPVE--------LW 45
           M     IDFET +    + C +     +   ++     L     + +             
Sbjct: 1   MKDFAAIDFETANGKRTSVCSVGIVIVKGGRIVNKIYRLIRPAPNYYTQWTTAIHGLTYD 60

Query: 46  DCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVL 99
           D +     P+    +K  LE   + +VAHNS F+   L+A    + +  P +++ CT   
Sbjct: 61  DTMEADDFPEVWAEIKPLLE--GLPLVAHNSPFDEGCLRAVHELYGMTYPNYKFYCTCRT 118

Query: 100 AR-SNG---LPSALKAVGEALKLS 119
           +R   G       L  V E    +
Sbjct: 119 SRKVFGKDLPNHQLHTVAERCGYN 142


>gi|332533384|ref|ZP_08409249.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037093|gb|EGI73550.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
          Length = 304

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 43/153 (28%), Gaps = 20/153 (13%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
             V L    FD   + L D + +  +     E L++  V  V H+   +  V +      
Sbjct: 8   PEVALIQV-FDGEHLALIDPLAELSLFD-FWEILKDPSVLKVLHSPSEDIEVFQKYAGFV 65

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
                   T    +  G  + +                G  L+ +  +G   +    R  
Sbjct: 66  --PSPLFDTQFALQLLGEGNCM----------------GFALMVKELQGIEIDKSESRTN 107

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
              R   +   +Y   D       F+ +    +
Sbjct: 108 WLQRPLTKKQLDYAAADTFYLLPCFELIIERIN 140


>gi|308187080|ref|YP_003931211.1| RNase D, processes tRNA precursor [Pantoea vagans C9-1]
 gi|308057590|gb|ADO09762.1| RNase D, processes tRNA precursor [Pantoea vagans C9-1]
          Length = 373

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 67/235 (28%), Gaps = 44/235 (18%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T  P    + G+ +  +D  ++L        P+ + D            
Sbjct: 25  VALDTEFVRTRTYYP----QLGLIQLFDDHQLVLI------DPLNIRDWSP-------FI 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T VT   H    +  V    F   +     I T +LA  +G P +          
Sbjct: 68  ALLTDTSVTKFLHAGGEDLEVFLHRFG--VLPTPMIDTQILAAFSGQPLSWGFASMVAHF 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           +  ++++ +       +  T                +   EY   DV     + R++   
Sbjct: 126 TQVELDKSESRTDWLARPLT----------------QRQCEYAAADVHYLLPIARQLMIN 169

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            E   +    L   D     R   V    A          R +    L+ L    
Sbjct: 170 TEEAGNMAAALSECDNLCQRRLDSVAPDEAWRDITNAWQLRPRQLAALQRLAAWR 224


>gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
 gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus fermentum 28-3-CHN]
          Length = 1447

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 43/158 (27%), Gaps = 28/158 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCVI---------LFAFG--FDDHPVELWDCV 48
            +  D ET     +    I   A   +D  V+          F              D V
Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDHFDQFIDPGFHLSEQTTALTSITDDMV 486

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARS 102
                 + + +  ++      +  HN  F+   +    +      I     I TL LAR 
Sbjct: 487 QGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYERHGMGQIK-QPVIDTLPLARF 545

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
                    L  + +  K+S     E   L +   +  
Sbjct: 546 LHPDFRGYRLNTLSKRFKVSL----EHHHLASYDSEAT 579


>gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 1447

 Score = 40.9 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 43/158 (27%), Gaps = 28/158 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCVI---------LFAFG--FDDHPVELWDCV 48
            +  D ET     +    I   A   +D  V+          F              D V
Sbjct: 427 YVIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDHFDQFIDPGFHLSEQTTALTSITDDMV 486

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARS 102
                 + + +  ++      +  HN  F+   +    +      I     I TL LAR 
Sbjct: 487 QGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYERHGMGQIK-QPVIDTLPLARF 545

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGE 137
                    L  + +  K+S     E   L +   +  
Sbjct: 546 LHPDFRGYRLNTLSKRFKVSL----EHHHLASYDSEAT 579


>gi|16579841|gb|AAL26656.1| unknown [Staphylococcus aureus]
          Length = 83

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY-----DIVLTVHDEIVCETPDTDEFNASMLYHLM 651
           VQ V+  I    ++   KA        I+L +HD I+ E    DE  A  +  LM
Sbjct: 5   VQTVASYIFKHILLEVYKAQCTQKSFQIILPIHDAIMIEC--DDEETAQSVAQLM 57


>gi|127512799|ref|YP_001093996.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
 gi|126638094|gb|ABO23737.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
          Length = 204

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 26/143 (18%)

Query: 3   TLFIDFETRSPIDLT----------KCGICKYAEDVCVI---LFAFG--FDDHPVE---- 43
            + +DFET     L           K       +    +    FA      D+       
Sbjct: 6   IVVLDFETTGLSPLQGDRAIEIGAVKLQQGVVVDRFQQLMNPGFAVSSFIADYTGITNAM 65

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH-RWICTLVLAR 101
           L D      +     + ++     +VAHN+ F++  L      +D+     + C+L+LAR
Sbjct: 66  LSDAPSCETVMADFADFIQ--GCHLVAHNASFDQKFLTAEFARIDLEQSQPFACSLLLAR 123

Query: 102 SNG---LPSALKAVGEALKLSSQ 121
                     L  +   L +++ 
Sbjct: 124 RLFQAVPNHQLGTLVNYLGIAND 146


>gi|296114717|ref|ZP_06833368.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978751|gb|EFG85478.1| DNA polymerase III subunit epsilon [Gluconacetobacter hansenii ATCC
           23769]
          Length = 298

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 27/151 (17%)

Query: 2   ATLFIDFETRSPIDLT------KCGICKYAEDVCVILFAFGFDD--HPVELWD------- 46
             + +D ET                   Y     ++     F+    P +          
Sbjct: 40  RAILVDVETTGLDCEKDEIIELAMVPFFYTHFGEIVGIGAPFEGLRKPAKPISSEVTKLT 99

Query: 47  ------CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
                      + P  +          +VAHN+ F+R  L+         + W C++   
Sbjct: 100 GIDNAMVEGKAINPDEVAAF--AGTSLVVAHNAAFDRRFLERFC-HAFAGNPWACSMSEV 156

Query: 101 RSNG---LPSALKAVGEALKLSSQKMEEGKE 128
           +        S L  +  +      K     +
Sbjct: 157 KWFDEGFESSKLALLAMSSGFYYDKHRAVHD 187


>gi|294865716|ref|XP_002764472.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
 gi|239863939|gb|EEQ97189.1| hypothetical protein Pmar_PMAR012804 [Perkinsus marinus ATCC 50983]
          Length = 703

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 42/170 (24%), Gaps = 31/170 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ--VLKE 59
             + ID E           +  Y       L           + D +   +M +      
Sbjct: 563 REVAIDLE--------HHNMQSYR--GFTCLIQIATRKKD-YIVDVLAPGIMMKMHDFNR 611

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
              +  +  V H +  +   L+   +L   +     T   AR   L              
Sbjct: 612 ITSDPGIVKVLHGADMDVQWLQR--DLSAYLCNMFDTGQAARVLELGGG----------- 658

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
                  K L+  +C  +  +     +      +     +Y + DV    
Sbjct: 659 ----YSLKNLLDFYCGYKADKANQLADWRQRPLS-ERMKQYARDDVHYLL 703


>gi|147797616|emb|CAN65003.1| hypothetical protein VITISV_023489 [Vitis vinifera]
          Length = 393

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQVLKEAL 61
            +  D E    +DL + G         ++  AF      + L D       + +  K AL
Sbjct: 56  VIGFDCE---GVDLCRHGSLC------IMQLAF---PDAIYLVDAIQGGEKLMKACKPAL 103

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           E++ +T V H+   +   L   F   I +H  + 
Sbjct: 104 ESSYITKVIHDCKRDSEAL--YFQFGIKLHNVVD 135


>gi|32473842|ref|NP_866836.1| ribonuclease D [Rhodopirellula baltica SH 1]
 gi|32444378|emb|CAD74377.1| ribonuclease D [Rhodopirellula baltica SH 1]
          Length = 493

 Score = 40.9 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 68/271 (25%), Gaps = 43/271 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            +  D E              Y     + L       H   +         P    + L 
Sbjct: 113 VIGFDTE--------FVSEDCYR--PELCLVQVAAGKHLAVIDPYTVGDTKP--FWDILT 160

Query: 63  NTDVT-----IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEA 115
           +  +      ++AH +  E            PI     T + A   G   P++L  + + 
Sbjct: 161 DDQIEPGSRVVIAHAAREEIRFAYRYSGR--PIAGLFDTQLAAGFVGIEYPASLATLVQK 218

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L            +     KGET      R     +        Y   DVT   E+  +L
Sbjct: 219 L------------VGQTLPKGETRTNWRHRPLTKDQ------LTYALHDVTTLAEMHSKL 260

Query: 176 EPLSSKEQELWYLDQTI-NDRGYCVDVALAHT-LNQIVDVERTKLDQELESLTYGLVSSS 233
                    + +LD+     +   +D   +                 E+    +      
Sbjct: 261 IADVKALDRVSWLDEETDRLQKKVIDAEESENWQRVSGSSGLKPRQLEIIRHLWRWREEI 320

Query: 234 RCLEKL--KTWLFLETGLHLEDLTETTCQRV 262
              +    +  +  +  + L        +++
Sbjct: 321 ARTKNRLPRRVMRDDLMVELAKKGSPDTKKI 351


>gi|298207301|ref|YP_003715480.1| polysaccharide biosynthesis protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849937|gb|EAP87805.1| polysaccharide biosynthesis protein [Croceibacter atlanticus
           HTCC2559]
          Length = 237

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 56/228 (24%), Gaps = 67/228 (29%)

Query: 3   TLFIDFET------RSPIDLTKCGI----------------------CKYAEDVCVILFA 34
            LF+D ET       S +D     +                        +AE   ++  +
Sbjct: 10  ILFLDIETVPEYKQWSELDDDTKLLWETKTQYQRKDEFTPEDFYDRAGIWAEFGKIVCIS 69

Query: 35  FGF----DDHPVELWDCVHDPV--MPQVLKEALEN----TDVTIVAHNSY-FERTVLKAC 83
            G+     D         H     + +  K  LE+        + AHN   F+   +   
Sbjct: 70  VGYFKIQGDSRQFRTTSFHGDEPKILRDFKGLLESHFNRPHHLLCAHNGKEFDFPFIARR 129

Query: 84  FNLDIPIHRWICTLVLARS-----NGLPS-------ALKAVGEALKLSSQKMEEGKELIA 131
                        +++          L          L  +        +     K L  
Sbjct: 130 -------------MIIHHIELPFKLNLFGKKPWEIPHLDTLELWKFGDYKHYTSLKLLTK 176

Query: 132 RFCKGE---THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                      +    R+   + +       YC+ D     +IF RL 
Sbjct: 177 ILGIPSPKDDIDGSQVRDVFYNEKDVDRIIIYCEKDTVSVAQIFLRLR 224


>gi|253689504|ref|YP_003018694.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756082|gb|ACT14158.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 245

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 47/167 (28%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     L       + E   +I      +                     D 
Sbjct: 7   RQIVLDTETTGMNML-----GVHYEGHKIIEIG-AVEVINRRLTGRHFHVYIKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-----LKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPI 90
                  + D  +        + +   +      +V HN+ F+   +       N D+P 
Sbjct: 61  EAYNVHGISDEFLADKPTYADIVDDFLDFIRGAELVIHNATFDIGFMDYEFRLLNRDLPK 120

Query: 91  HRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                    +L++AR        +L A+ +  ++ + K      L+ 
Sbjct: 121 TETFCKITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLD 167


>gi|197335831|ref|YP_002156764.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
 gi|197317321|gb|ACH66768.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
          Length = 223

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 11/98 (11%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFNLDIPIHRWIC 95
            L+D      +     E +      +VAHN+ F+          L           +   
Sbjct: 56  FLYDKPEYKDIHDEFLEFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIGTTDQYCKITD 113

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           TL +A+         L  + E   + +        L+ 
Sbjct: 114 TLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLD 151


>gi|118473161|ref|YP_890494.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
           MC2 155]
 gi|118174448|gb|ABK75344.1| DNA polymerase III subunit epsilon [Mycobacterium smegmatis str.
           MC2 155]
          Length = 337

 Score = 40.9 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 37  FDDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFN 85
            D  P  +     +          +   L E L     T+VAHN+ F+ + L A      
Sbjct: 67  VDPGPTHVHGLTAEMLEGQPCFADVVDELIEVLR--GRTLVAHNAGFDYSFLAAEAELVG 124

Query: 86  LDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEE 125
            ++PI   +CT+ LAR   L      L+ +     ++  K  +
Sbjct: 125 AELPIDTAMCTVELARRLELGTENLRLETLAAHWGVTQMKPHD 167


>gi|326796075|ref|YP_004313895.1| DNA polymerase III subunit epsilon [Marinomonas mediterranea MMB-1]
 gi|326546839|gb|ADZ92059.1| DNA polymerase III, epsilon subunit [Marinomonas mediterranea
           MMB-1]
          Length = 235

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 42/154 (27%)

Query: 1   MATLFIDFETRSPID------------------LTKCGICKYA--------EDVCVILFA 34
           M  + +D ET                       LTK     Y         E   V   +
Sbjct: 1   MRQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTKRHFHVYINPDREVEEEAFQVHGIS 60

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA------CFNLDI 88
               +    L D      + Q   + +      ++ HN+ F+   +         F    
Sbjct: 61  ----NE--FLADKPRFHEIAQEFLDFIR--GAELIIHNAPFDVGFMDHEFSMLGNFPKTR 112

Query: 89  PIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
            +     +LV AR     +   L A+     + +
Sbjct: 113 DVCEIFDSLVFARKKHPGAKNNLDALCRRYGIDN 146


>gi|325858421|ref|ZP_08172583.1| exonuclease [Prevotella denticola CRIS 18C-A]
 gi|325483059|gb|EGC86047.1| exonuclease [Prevotella denticola CRIS 18C-A]
          Length = 178

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLPSA 108
            +   ++  +E   + +VAHN+ F++  L+ACF    +D P + ++ TL  AR      +
Sbjct: 85  KVWARIEPLIE--GLPLVAHNAPFDKGCLRACFQTYRMDYPDYEFLDTLRAARRVFPHLS 142

Query: 109 ---LKAVGEALKLS 119
              L  V  A    
Sbjct: 143 NHQLHTVSAACGYD 156


>gi|283785581|ref|YP_003365446.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168]
 gi|282949035|emb|CBG88638.1| exodeoxyribonuclease X [Citrobacter rodentium ICC168]
          Length = 220

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 32/124 (25%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVVDGKIVNPMSHLVRPDR----PISPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+  VL            WICT+ L+R          
Sbjct: 61  KPWIEDIIPHYYGSEWYVAHNASFDSRVL------PEMPGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|171056716|ref|YP_001789065.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170774161|gb|ACB32300.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 210

 Score = 40.9 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 42/149 (28%), Gaps = 31/149 (20%)

Query: 1   MATLF-IDFETRSPIDLTKCGICKY----AEDVCVILFAFGFDDHPVELW---------- 45
           M T+  IDFET            +          ++   +    +               
Sbjct: 1   METIAVIDFETTGMTPSQGARATEIGAVLVRGGEIVG-QYQSLMYSGVHIPPFIEQLTGI 59

Query: 46  ------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHR-WIC 95
                 D      + + +          +VAHN+ F+R      +     +  + + + C
Sbjct: 60  SNAMLRDAPPAEQVMREVAAF--TRGCPMVAHNAAFDRGFWLAERERAGCEPDLAQEFAC 117

Query: 96  TLVLARSNG---LPSALKAVGEALKLSSQ 121
           T++L+R          L  +     L + 
Sbjct: 118 TVLLSRRLNTEAPNHKLGTLASWFGLPNN 146


>gi|288802870|ref|ZP_06408307.1| exonuclease [Prevotella melaninogenica D18]
 gi|288334687|gb|EFC73125.1| exonuclease [Prevotella melaninogenica D18]
          Length = 163

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 27/139 (19%)

Query: 5   FIDFET--RSPIDLTKCGICKYAEDVCVILFAFG-FDDHPVEL-WDCVHDP--------- 51
            IDFET       +   G+        ++   +      P    W C             
Sbjct: 6   AIDFETANFERCSVCSVGL-VIVRGGEIVDSFYSLIQPEPNYYHWRCTQVHGLTCADTDG 64

Query: 52  -----VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
                 + + ++  +E   + +VAHN+ F+++ LK     + +D P + ++ TL  AR +
Sbjct: 65  APVFCEIWKQIEPMIE--GLPLVAHNASFDKSCLKASFYTYQMDYPDYEFLDTLKAARRH 122

Query: 104 GLP---SALKAVGEALKLS 119
                   L  V  A    
Sbjct: 123 FPHLPDHQLHTVSSACGYE 141


>gi|262279776|ref|ZP_06057561.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
 gi|262260127|gb|EEY78860.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
          Length = 458

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 50/187 (26%), Gaps = 40/187 (21%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYA-------EDVCVILFAFG 36
             L +D ET        D              LT   I  Y        +   +   +  
Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSENIHGISDN 290

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI--PIH 91
           F        D          L + L      I+AHN+ F+   L        L     + 
Sbjct: 291 FLKDKPLYADIA------DTLFDYL--KGAEIIAHNATFDMNFLDMEFRRAGLPALSEVC 342

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
               TL LA+S       +L A+    ++ ++       L+      + +  +       
Sbjct: 343 EVTDTLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSF 402

Query: 150 HREAWRL 156
             +A   
Sbjct: 403 DIDALSQ 409


>gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           R712]
 gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           S613]
 gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           DAPTO 512]
 gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis DAPTO 516]
 gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           R712]
 gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           S613]
 gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           DAPTO 512]
 gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
           faecalis DAPTO 516]
          Length = 929

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 36/145 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-------FGFDDHPVELWD------------ 46
           +D ET      +             +L         F  D +P ++              
Sbjct: 16  VDLETTGTDPTSDR-----IIQFGCVLVQEGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 47  ----CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                 +   +   +   LE+     VAHN +F+   L                I T+ L
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 100 ARSNGLPSA---LKAVGEALKLSSQ 121
           A+          L  + E+L LS +
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSHE 153


>gi|227503895|ref|ZP_03933944.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
 gi|227199518|gb|EEI79566.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
           6940]
          Length = 223

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 41/153 (26%), Gaps = 33/153 (21%)

Query: 2   ATLFIDFETRSPID-----------------------LTKCGICKYAEDVCVILFAFGFD 38
             L  D ET S                          L   G+        +        
Sbjct: 7   RMLSFDLETTSVNPKEARIVTSALVRIDGRDVDKREMLADPGVEIPEAAAKIHGIT---- 62

Query: 39  DHPVELWDCVHDPVMPQVLKEALE--NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                     HD V+ Q ++   +  +  +T++ +N+ ++ +VL+A              
Sbjct: 63  TEKARAEGQPHDEVLAQTVRSIRQAWDDGLTLIVYNAAYDLSVLRALTGDFTVDGPVFDP 122

Query: 97  LVLARSNGL----PSALKAVGEALKLSSQKMEE 125
            V+ R           L  V     ++ +   E
Sbjct: 123 FVIDRVKDKWRKGKRTLGDVSAHYGVTLENAHE 155


>gi|153829952|ref|ZP_01982619.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
 gi|148874587|gb|EDL72722.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
          Length = 247

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSN 103
             + +   + +      +VAHN+ F+   +   F              +   TL +A+  
Sbjct: 85  KDVHEEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLSGAIGKTSDFCKVTDTLAMAKRI 142

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  L  + E   + +        L+ 
Sbjct: 143 FPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|313202457|ref|YP_004041115.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
 gi|312441773|gb|ADQ85879.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
          Length = 473

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 41/143 (28%), Gaps = 39/143 (27%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVC------------------------VILFAFGFDDHP 41
           +D ET     L                                     +       DD  
Sbjct: 8   LDLETTGATPLVDRITEIALIRFENGQEVSRWQTLVNPETAIPPFIQRLTGI----DDGM 63

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLV 98
           V      H   +   L + LE     + AHN  F+   LK  F    +D+   + +CT+ 
Sbjct: 64  VATAP--HFKEVAGELLDHLE--GAVLCAHNVRFDHGFLKNEFKRIGIDLR-QKVLCTVK 118

Query: 99  LARSNGL---PSALKAVGEALKL 118
           L+R         +L ++ E   L
Sbjct: 119 LSRKLYPQHRSHSLDSIIERHSL 141


>gi|237803575|ref|ZP_04591160.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331025557|gb|EGI05613.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 257

 Score = 40.9 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 38/152 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            ++ +D ET     +      +  E  CV L           ++                
Sbjct: 9   RSIVLDTETTG---MPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHG 65

Query: 52  -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR------ 92
                         +     E +      ++ HN+ F+   +   F L     R      
Sbjct: 66  ITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGDQDRSDITRH 123

Query: 93  --WICTLVLARSNGLPS--ALKAVGEALKLSS 120
              + TL++AR        +L A+ +   + +
Sbjct: 124 CSILDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|330815857|ref|YP_004359562.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
 gi|327368250|gb|AEA59606.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia gladioli BSR3]
          Length = 388

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL--- 105
            +   L   LE      +AHN+ F+R  L+A F            +CT+ L+R+      
Sbjct: 81  SIAAELFARLE--GRLFIAHNASFDRGFLRAEFERAGFAFNP-DMLCTVRLSRALFPRES 137

Query: 106 PSALKAVGEALKL 118
              L A+ E   L
Sbjct: 138 RHGLDALIERHAL 150


>gi|320668808|gb|EFX35603.1| DNA polymerase II [Escherichia coli O157:H7 str. LSU-61]
          Length = 783

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLGGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|260220820|emb|CBA28768.1| hypothetical protein Csp_A08790 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 430

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 10/42 (23%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD 46
            +D ET S  ++             ++  +F  +        
Sbjct: 368 ALDTETTSLDEMR----------AEIVGISFSTEPGKGATIP 399


>gi|254506426|ref|ZP_05118568.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16]
 gi|219550600|gb|EED27583.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 16]
          Length = 210

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 51/159 (32%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELWDCVHD 50
            + +D ET S       L      K  ++         V L A    D   V++    H 
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSRPFEVRLRAPQSLDSSSVKIHQMRHQ 89

Query: 51  PVMP-----QVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP----------- 89
            ++      Q L + LE   +  +V ++  +++ +L    +      +P           
Sbjct: 90  DLVDGLDEKQALIKLLEFVGNRPLVGYHIRYDKKILDLACRRHLGFPLPNPLIEVSQIYH 149

Query: 90  -------IHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
                   + +              +L A+ + L L  Q
Sbjct: 150 DKLERHLPNAYFD-----------LSLDAICKHLDLPIQ 177


>gi|94987361|ref|YP_595294.1| helicase family protein [Lawsonia intracellularis PHE/MN1-00]
 gi|94731610|emb|CAJ54973.1| Distinct helicase family with a unique C-terminal domain including
           a metal-binding cysteine cluster [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 196

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 27/173 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP--QVLKEA 60
            L +D E  S     + G  ++AE + +   A  +D           + + P  Q LK+A
Sbjct: 23  YLVLDIE--SRYSAEEVGGWQFAEKMEI-SIAVTYDSTTDTFTSYTQETIFPLFQRLKKA 79

Query: 61  LENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
                  I+  N + F+  VL+     ++                LP +L  + E  K  
Sbjct: 80  -----DLIIGFNHTTFDYAVLQPFAPYNLQ--------------NLP-SLDLLKEIKKSL 119

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           S ++     L       +         +           EYCK DV++T ++F
Sbjct: 120 SHRISL-DNLAQATLNIKKTANGLQALQWWKEGNLENIIEYCKNDVSITNKLF 171


>gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX4244]
          Length = 929

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 36/145 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-------FGFDDHPVELWD------------ 46
           +D ET      +             +L         F  D +P ++              
Sbjct: 16  VDLETTGTDPTSDR-----IIQFGCVLVQEGKIIANFATDVNPNQVVPKQIQSLTGISNT 70

Query: 47  ----CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                 +   +   +   LE+     VAHN +F+   L                I T+ L
Sbjct: 71  QVQKAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVEL 128

Query: 100 ARSNGLPSA---LKAVGEALKLSSQ 121
           A+          L  + E+L LS +
Sbjct: 129 AQIFLPTEKSFRLSDLSESLGLSHE 153


>gi|313768005|ref|YP_004061436.1| hypothetical protein BpV1_006c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599612|gb|ADQ91633.1| hypothetical protein BpV1_006c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 432

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 64/269 (23%), Gaps = 52/269 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDV---CVILFAF---------------------- 35
           M  +  D ET       K              ++  AF                      
Sbjct: 1   MNYIAWDTETTGLPMGYKKATPDNIHLFDKCRMLTLAFVKYSSKGRELSSYHGLVYPDTF 60

Query: 36  GFDDHPVELWDCVHDPVMPQ---------VLKEALENTDVTIVAHNSYFERTVLK---AC 83
                   +    H+  + +           KEA+ NT +  VAHNS F+          
Sbjct: 61  DVPQESTNVHGITHEHAIHKGQPFGYVYAAFKEAVSNTSIL-VAHNSSFDENCFFSECYR 119

Query: 84  FNLDIPIHR---WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE-LIARFCKGETH 139
              D    +   ++ TL +ARS         +    K    K  +  + L      G  +
Sbjct: 120 RGFDTEPFKHVHFVDTLKMARSVLPGLFNHKLLTVYKHYFGKEFDAHDALNDSRACGTIY 179

Query: 140 ECLYDRNKPNHREAWRLFGEYCKGDVTVTREI----FKRLEPLSSKEQELWYLDQTINDR 195
             L D                      +   I    +K+ + +       +         
Sbjct: 180 PLLRDNEFKMKDVGIEKVTLKA---SDIASIIGMNPYKKPKEVLDNLWAKY---APETFE 233

Query: 196 GYCVDVALAHTLNQIVDVERTKLDQELES 224
           G   +     T+ +         D E   
Sbjct: 234 GKTKEQEALDTIQKCSASRLLFKDTETYK 262


>gi|283832758|ref|ZP_06352499.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220]
 gi|291072441|gb|EFE10550.1| exodeoxyribonuclease 10 [Citrobacter youngae ATCC 29220]
          Length = 220

 Score = 40.9 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 12/64 (18%)

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDIIPQYYGSDWYVAHNASFDRRVL------PEMPGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1151

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 37/145 (25%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVIL-FAFGFDDHPVELWDCVHD------- 50
            +  D ET         + + G  K      +I  F+   +                   
Sbjct: 117 YVVFDIETTGFDPFNDKIIEIGAVK-MRGREIIGEFSEFVNPE----IPIPPKITELTTI 171

Query: 51  -----------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICT 96
                        +     E   +T V  VAHN+ F+   +K       L+      I T
Sbjct: 172 TDEMVANAEKIETVLPRFLEFCTDTTV--VAHNAKFDVGFIKQKTIEQGLEYSP-SVIDT 228

Query: 97  LVLARSNGL---PSALKAVGEALKL 118
           L LAR+         L  + +   +
Sbjct: 229 LPLARTLLPDSRGYGLANLVKYFGI 253


>gi|156059756|ref|XP_001595801.1| hypothetical protein SS1G_03891 [Sclerotinia sclerotiorum 1980]
 gi|154701677|gb|EDO01416.1| hypothetical protein SS1G_03891 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 268

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 10/144 (6%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
           LK  LE+  +  V  +   +   L + F + +     I   ++  +     +   +    
Sbjct: 101 LKSILESQLIPKVIFDVRNDSDALYSHFGIKL--GGVIDLQLMELATRF-YSRDFLCGLG 157

Query: 117 K-LSSQKMEEGKEL-----IARFCKGETHECLYDRNKPNHREAWRLFG-EYCKGDVTVTR 169
           K + +  ++  +EL     I +              +  +         +YC  DV +  
Sbjct: 158 KCMENDLVQTPEELKVRGAIKQRGIEIFAPEKGGSYEVFNDRPLDPAIVDYCIQDVQLLP 217

Query: 170 EIFKRLEPLSSKEQELWYLDQTIN 193
           E+++      SK  + W       
Sbjct: 218 ELWEVYNAKLSKLHKRWAAKIEQE 241


>gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035]
 gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035]
          Length = 688

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 26/140 (18%)

Query: 4   LFIDFETRSPIDLTKCGICKYAE----DVCVI-LFAFGFDDHPVELWDCVHD------PV 52
           +  D ET          I + A     +  ++   +F    +P                 
Sbjct: 495 VVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRVHHISDD 554

Query: 53  MPQVLKEALENTDV--------TIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
           M Q   + +E             +VAHN+ F+   L+            +  +CT++++ 
Sbjct: 555 MVQDAPDIIEAGRRFHDFCQGAVLVAHNAPFDLAFLRLKEKVIGRRFD-NPVLCTVLMSA 613

Query: 102 SNGLP---SALKAVGEALKL 118
                     L A+ E   +
Sbjct: 614 GLFDHSGQHTLDALCERFGI 633


>gi|311280959|ref|YP_003943190.1| DNA polymerase B region [Enterobacter cloacae SCF1]
 gi|308750154|gb|ADO49906.1| DNA polymerase B region [Enterobacter cloacae SCF1]
          Length = 785

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 23/106 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYA---EDVCVILFAFGFDDHPVELWDCVHDPV 52
             + +D ET    +L   G+        Y    E+       F  +            P 
Sbjct: 153 KWVSLDIETTRHGELYCIGLEGCGQRVVYMLGPENGDATGCDFQLE-------YVASRPQ 205

Query: 53  MPQVLKEALE--NTDVTIVAHNS-YFERTVLKAC---FNLDIPIHR 92
           + + L       + D+  +  N   F+  VL+     + + + + R
Sbjct: 206 LLEKLNAWFAIHDPDII-IGWNLVQFDLRVLQKHAERYRIPLMLGR 250


>gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1436

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 22/139 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCVI-----------LFAFGFDDHPVELWDCV 48
            +  D ET     +    I   A   +D  +I             +    +      D +
Sbjct: 421 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFTSFANPHHPLSMTTIELTGITDDML 480

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
            D    + +     +   D  +VAHN+ F+   L   F    L    +  I TL LAR  
Sbjct: 481 KDAPDVEEVLRQFYDWIGDSVLVAHNASFDIGFLNVGFAKIGLGKVTNPVIDTLELARFL 540

Query: 104 GL---PSALKAVGEALKLS 119
                   L  + +   + 
Sbjct: 541 YPDLKNHRLNTLCKKFDIE 559


>gi|229195843|ref|ZP_04322602.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1293]
 gi|228587616|gb|EEK45675.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1293]
          Length = 934

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      E+              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|226941443|ref|YP_002796517.1| DNA-directed DNA polymerase III [Laribacter hongkongensis HLHK9]
 gi|226716370|gb|ACO75508.1| Probable DNA-directed DNA polymerase III [Laribacter hongkongensis
           HLHK9]
          Length = 493

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 9/73 (12%)

Query: 55  QVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---P 106
             L  AL        ++AHN+ F+   LK       L        CT+ L+R        
Sbjct: 71  AELAPALLARLNGKLLIAHNARFDYGFLKNEFRRLGLTFTTDPL-CTVKLSRRLYPQHAK 129

Query: 107 SALKAVGEALKLS 119
            +L ++     + 
Sbjct: 130 HSLDSLIARHGID 142


>gi|224368019|ref|YP_002602182.1| hypothetical protein HRM2_09050 [Desulfobacterium autotrophicum
           HRM2]
 gi|223690735|gb|ACN14018.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 277

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 43/167 (25%), Gaps = 30/167 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           +++D ET       +        D                     +    P+ + +    
Sbjct: 87  VYLDIETTGLEPSYESITTIALYD----GITIR------YYVKGENLDRFPEEISQY--- 133

Query: 64  TDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGEALKLS 119
               IV +N   F+   ++  F + +          L       G    LK     L L 
Sbjct: 134 --KAIVTYNGKCFDVPFIEHEFGIRLDQVHID----LRYILKSLGFRGGLKGCERMLGLD 187

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
                +   +   F     ++ + ++++            Y   DV 
Sbjct: 188 R---GDLDGVDGYFAILLWNDYMRNKDRRV----LETLLAYNIEDVV 227


>gi|167628537|ref|YP_001679036.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
 gi|167591277|gb|ABZ83025.1| DNA polymerase iii polc-type [Heliobacterium modesticaldum Ice1]
          Length = 255

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 7/74 (9%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIH-RWICTLVLARSNGL---P 106
            +     + + +  V  VAH   F+   L      L   ++   I T+ L+R        
Sbjct: 139 PVLDDFLDFI-DGAVL-VAHGIAFDVGFLDKYLRPLRTKLYHPVIDTITLSRVLEPFRAE 196

Query: 107 SALKAVGEALKLSS 120
            +L A+     ++ 
Sbjct: 197 HSLDALVADYGITP 210


>gi|206974778|ref|ZP_03235693.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus H3081.97]
 gi|217959123|ref|YP_002337671.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus AH187]
 gi|222095271|ref|YP_002529331.1| bifunctional ATP-dependent DNA helicase/DNA polymerase iii subunit
           epsilon [Bacillus cereus Q1]
 gi|206746797|gb|EDZ58189.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus H3081.97]
 gi|217066733|gb|ACJ80983.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH187]
 gi|221239329|gb|ACM12039.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
          Length = 934

 Score = 40.9 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      E+              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
 gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
          Length = 1464

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 11/116 (9%)

Query: 54  PQVLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPSA 108
            + + +  ++   D  +VAHN+ F+   +        +P      I TL LAR+      
Sbjct: 491 IEQVLQMFQDFCKDTVLVAHNATFDVGFMNANYKRHGMPTITQPVIDTLELARNLYPEY- 549

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                +   L          L          E          +EA    G     D
Sbjct: 550 -----KRHGLGPLTKRFQVSLEHHHMANYDAEATGRLLFIFLKEARENHGLTNMMD 600


>gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 1462

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 11/117 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                 +   L          L          E          ++    +G     D
Sbjct: 548 ------KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKYGVTNLKD 598


>gi|159037106|ref|YP_001536359.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
 gi|157915941|gb|ABV97368.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
          Length = 451

 Score = 40.9 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 31/171 (18%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMPQVLKEALENTDVTIVAHN 72
           D  +    +Y++   ++            +          + + + EA        V H 
Sbjct: 87  DAERASGYRYSQRAYLVQLRRA-GAGTALIDPLPLPELTTLDEAIGEA------EWVLHA 139

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L     L +   R   T + AR  G     L A+ E L         G  L  
Sbjct: 140 ASQDLPCLAE---LGLRPRRLFDTELAARLAGFERVGLAALTEHL--------LGFSL-- 186

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                E H    D +     E+W     Y   DV +  E+   LE   +++
Sbjct: 187 -----EKHHSAADWSSRPLPESW---LTYAALDVELLVELRDALEAELTRQ 229


>gi|307132179|ref|YP_003884195.1| DNA polymerase III subunit epsilon [Dickeya dadantii 3937]
 gi|306529708|gb|ADM99638.1| DNA polymerase III epsilon subunit [Dickeya dadantii 3937]
          Length = 244

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 47/167 (28%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHKIIEIG-AVEVINRRLTGRHFHVYLRPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-----LKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPI 90
                  + D  +        + +   +      +V HN+ F+   +         DIP 
Sbjct: 61  EAYNVHGISDEFLADKPTYGDVVDDFLDFIRGAELVIHNATFDIGFMDYEFRLLKRDIPK 120

Query: 91  HRWICT----LVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
               CT    L +AR         L A+ +  ++ + K      L+ 
Sbjct: 121 TETFCTITDSLQMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLD 167


>gi|294498159|ref|YP_003561859.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
           QM B1551]
 gi|294348096|gb|ADE68425.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           megaterium QM B1551]
          Length = 933

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL-- 105
             +   + E L++     VAHN  F+ T L+        +   +  + T+ LAR      
Sbjct: 72  EEISPKIIELLDDA--YFVAHNVAFDLTFLQEELYQCGEETLYNSTVDTVELARILLPTV 129

Query: 106 -PSALKAVGEALKLSSQ 121
               L  + E L +  +
Sbjct: 130 DGYKLSQLAEYLHIEHE 146


>gi|167581005|ref|ZP_02373879.1| possible DNA polymerase/helicase [Burkholderia thailandensis TXDOH]
          Length = 379

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 55  QVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---P 106
             +  AL         VAHN+ F+R  L+A F    +       +CT+ L+R+       
Sbjct: 80  ADIAPALLERLDGKLFVAHNASFDRGFLRAEFERAGVAFNP-DVLCTVRLSRALFPRESR 138

Query: 107 SALKAVGEALKL 118
             L A+ E   L
Sbjct: 139 HGLDALIERHAL 150


>gi|257076927|ref|ZP_05571288.1| DNA polymerase II [Ferroplasma acidarmanus fer1]
          Length = 777

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 40/194 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
                D E      ++         ++ VI ++  F+    E      +P M +   + +
Sbjct: 157 KIFSFDIE----NSIST-------REIFVIGYSVFFNGEITEGALTGTEPEMLEDFNKLV 205

Query: 62  --ENTDVTIVAHNS-YFERTVLKACFNLD----------IPIHRWICTL--VLARSNGLP 106
             E+ D+    +N   ++  +L+     +          I   R +     +  R     
Sbjct: 206 QREDPDII-TGYNIDGYDMPLLEERMKFNKVRFSIGRDYISPRRIMDQYWRLHGRVID-- 262

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAW----RLFGEYCK 162
                  E  K+   K     E +        +E   D N+ +    W        +YC 
Sbjct: 263 ---DTWWEVRKVLHPK----HETLNYVSNMLLNEGKEDVNRLDIENEWKNRRDDVIKYCI 315

Query: 163 GDVTVTREIFKRLE 176
            D  +   I++++ 
Sbjct: 316 KDARLALLIYRKIR 329


>gi|83720800|ref|YP_442134.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|167619083|ref|ZP_02387714.1| possible DNA polymerase/helicase [Burkholderia thailandensis Bt4]
 gi|257138320|ref|ZP_05586582.1| DNA polymerase/helicase [Burkholderia thailandensis E264]
 gi|83654625|gb|ABC38688.1| possible DNA polymerase/helicase [Burkholderia thailandensis E264]
          Length = 379

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 55  QVLKEALEN--TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---P 106
             +  AL         VAHN+ F+R  L+A F    +       +CT+ L+R+       
Sbjct: 80  ADIAPALLERLDGKLFVAHNASFDRGFLRAEFERAGVAFNP-DVLCTVRLSRALFPRESR 138

Query: 107 SALKAVGEALKL 118
             L A+ E   L
Sbjct: 139 HGLDALIERHAL 150


>gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
          Length = 1463

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLPS 107
             + +  ++  +++   +VAHN+ F+   +   +    L I     I T           
Sbjct: 491 EQVLREFQDFCQDS--VMVAHNATFDVGFMNVNYERAGLPIISQPVIDT------LEFAR 542

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            L    +   L       G  L          E          ++A   
Sbjct: 543 NLYPDFKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFTFLKDALEK 591


>gi|319778324|ref|YP_004129237.1| Glycyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317108348|gb|ADU91094.1| Glycyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 455

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/181 (7%), Positives = 43/181 (23%), Gaps = 5/181 (2%)

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           Q+ +  ++LI +    E       +N     +      E    D     ++   +     
Sbjct: 126 QRDDLSQDLIEKLANDE--HWYIRKNIAEREDLPAELIEKLANDKD--WDVRCTIAERED 181

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLD-QELESLTYGLVSSSRCLEKL 239
             + +  +           ++A    L   +  +  + +  E+             + ++
Sbjct: 182 LPESVMQILADDELWEVRQNIAQRKDLPSSLIEKLAEDEYWEVRQNIAQREDLPESVMQI 241

Query: 240 KTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
                 +         +     ++          I            +   L  L  + N
Sbjct: 242 LADDEDKYVRRAIAERKDLSSELIEKLANDEDDEIAFSVMYENFHSLSSTCLEKLANSRN 301

Query: 300 S 300
            
Sbjct: 302 E 302


>gi|307709092|ref|ZP_07645551.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK564]
 gi|307620038|gb|EFN99155.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK564]
          Length = 816

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 85/290 (29%), Gaps = 45/290 (15%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP- 51
           M T+      +D E   T S   + + GI    ED  ++   +  D +P E  D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGKIVD-HYSTDVNPHEPLDAHIKEL 58

Query: 52  ---------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRW 93
                           + + + + +E+     VAHN  F+  +L         ++   R 
Sbjct: 59  TGLTDQRLAQAPDFSQVARKIFDLVEDG--IFVAHNVQFDANLLAENLFFEGYELRNPRV 116

Query: 94  ICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRN 146
             T+ LA+         +L  +   L +  +     + + +                 + 
Sbjct: 117 -DTVELAQVFFPEMEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKIAQLPKG 175

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFK----RLEPLSSKEQELWYLDQTINDRGYCVDVA 202
                        Y      V  EI++       P   + Q L++       +   +   
Sbjct: 176 LLERLLEMADALLY--ESYLVIEEIYRNQSILSSPDLVEVQGLYFKKPAAPLKSRKLSQD 233

Query: 203 LAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
            +  ++ +    R + +   + +   L      L +  T +    G  L 
Sbjct: 234 FSKNISLLNLEVREEQENFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLP 283


>gi|262372107|ref|ZP_06065386.1| ribonuclease HI [Acinetobacter junii SH205]
 gi|262312132|gb|EEY93217.1| ribonuclease HI [Acinetobacter junii SH205]
          Length = 448

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 51/181 (28%), Gaps = 28/181 (15%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDDHPVE 43
             L +D ET        D              LT   I  Y      +  +        E
Sbjct: 221 RQLILDTETTGFYYQDNDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVDVHGITDE 280

Query: 44  LW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI--PIHRWICTL 97
              D      +  VL E L      I+AHN+ F+   L        L     +     TL
Sbjct: 281 FLADKPKYAEIADVLFEFL--KGAEIIAHNATFDMNFLDMEFKRAGLPALSEVCEVTDTL 338

Query: 98  VLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            LA++       +L A+    ++ ++       L+      + +  +         +A  
Sbjct: 339 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDMDALS 398

Query: 156 L 156
            
Sbjct: 399 Q 399


>gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
 gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
          Length = 1426

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 64/241 (26%), Gaps = 54/241 (22%)

Query: 4   LFIDFETRSPIDLTKCGICKYA---EDVCVIL-----------FAFGFDDHPVELWDCVH 49
           +  D ET    ++        A    D  ++             ++   +      + V 
Sbjct: 413 VVFDLETTGFSNINDKITEIGAVKIRDFEIVDRFSELVNPEKDISYRVQELTGITNEMVK 472

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
           D    + +         D  +VAHN+ F+   +        L+    +   TL+LAR   
Sbjct: 473 DKPTIEEILPKFMEFVGDDVLVAHNADFDTGFIMQKCKEQGLEYKNKKV-DTLMLARIML 531

Query: 105 LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                    +  KL     E G +L+                                 D
Sbjct: 532 PNL------KRYKLDKVAKEVGVQLLNHHR--------------------------AVDD 559

Query: 165 VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
              T  IF +   +    ++       +N     VD     T +  +  +     + L  
Sbjct: 560 AEATANIFIKFLGMLK--KQGVEKLSDVNTVLGKVDYTKLKTHHITLIAKNQTGIKNLYK 617

Query: 225 L 225
           +
Sbjct: 618 I 618


>gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT]
 gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336]
 gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
 gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336]
          Length = 252

 Score = 40.9 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-----KACFNLDI-PIHRWICTLVL 99
           D      + Q   + +      ++ HN+ F+   +     K  FN++   I     TL +
Sbjct: 77  DKPDFSAIAQEFIDFI--KGAELIIHNAPFDIGFMDYEFKKHNFNINTADICLITDTLQM 134

Query: 100 ARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           AR        +L A+ + L + + K      L+ 
Sbjct: 135 ARQMYPGKRNSLDALCDRLNIDNSKRTLHGALLD 168


>gi|324325658|gb|ADY20918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 934

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      E+              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 1402

 Score = 40.9 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 40/149 (26%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWD-----CVHDPVMPQVLK 58
            +D  T   +D+   G     +   +I   A   ++    + D        +  +P  + 
Sbjct: 385 SLDT-TFVVVDIETTGFDN--QKDRIIEIGAVKIENGE--IVDRFSTFVDPEGKIPIRIS 439

Query: 59  E------------------ALENTD----VTIVAHNSYFERTVLKACF---NLDIPIHRW 93
           E                   LE         +VAHN+ F+   LK  +    L I  + +
Sbjct: 440 ELTGIYQNMVDNAPKLSDAILEFEKFCSGAILVAHNAQFDIGFLKRSYQECGL-IFDYTY 498

Query: 94  ICTLVLARSN---GLPSALKAVGEALKLS 119
           I TL L+R          L  V E L + 
Sbjct: 499 IDTLELSRRVLTDLSSHKLNKVAEFLNIE 527


>gi|270610572|ref|ZP_06221670.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
 gi|270318079|gb|EFA29335.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212]
          Length = 164

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 5/46 (10%), Positives = 14/46 (30%), Gaps = 10/46 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC 47
             + +D ET S   ++            ++  +F  ++        
Sbjct: 129 KLIAVDTETDSLDYMS----------ANLVGISFALENGEAAYLPL 164


>gi|329118044|ref|ZP_08246757.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465932|gb|EGF12204.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 247

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 38/180 (21%)

Query: 2   ATLFIDFETRSPID------------------LTKCGICKYAE-DVCVILFAFGFDDHPV 42
             + +D ET                       LT+  +  Y   D  +   A        
Sbjct: 5   RQIILDTETTGLYSDRGDRILEFAGIEMRKRRLTERTLHLYIHPDRDIPEEAAAV---HG 61

Query: 43  ELWDCVHDPVMP------QVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-----I 90
              D + +   P      Q + + L      ++ HN+ F+   L      + +P      
Sbjct: 62  ITLDTLAEKNAPKFAAVGQEIADFLR--GAELIIHNARFDVGFLDMEFERMGLPTIEELG 119

Query: 91  HRWICTLVLAR--SNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                TL +AR    G  ++L A+   L +   K      LI      E +  +      
Sbjct: 120 CEVTDTLAMAREKYPGQKASLDALCGRLDIDRSKRVYHGALIDCELLAEVYLAMTREQFD 179


>gi|228477577|ref|ZP_04062210.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           salivarius SK126]
 gi|228250721|gb|EEK09919.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
           salivarius SK126]
          Length = 828

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         ++   R   T+ LA+       
Sbjct: 75  EIARTIFELIED--CIFVAHNVKFDANLLAEALFMEGFELRTPRV-DTVELAQVFYPTLE 131

Query: 107 -SALKAVGEALKLS 119
              L  + + L L 
Sbjct: 132 QYKLSHLSKVLNLD 145


>gi|229816213|ref|ZP_04446523.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM
           13280]
 gi|229808221|gb|EEP44013.1| hypothetical protein COLINT_03263 [Collinsella intestinalis DSM
           13280]
          Length = 977

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 56/224 (25%), Gaps = 51/224 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFG-------FDDHPVEL---------- 44
             + +D ET                D  +I  A          D     +          
Sbjct: 46  DVIVLDTETTGLS----------HRDSELIEIAAARLRGREIVDRFDTFVKPSGLIPEEI 95

Query: 45  --------WDCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                    D  H P     +    E      +VAHN+ F+R  ++           WI 
Sbjct: 96  TKLTSITNVDVAHAPSAVDAVASLAEFVGGCPVVAHNAAFDRGFIEQVPGGADVSDIWID 155

Query: 96  TLVLARSNGL---PSALKAVGEALK---LSSQKMEEGKEL-----IARFCKGETHECLYD 144
           +L L+R          L  + E      +S +   + + L     I      +    L  
Sbjct: 156 SLALSRIALPRLASHKLAVMAELFGCESVSHRANADVEALCGVWRILLCGLADLPAGLMR 215

Query: 145 RNKPNHR-EAWR---LFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
           R    H    W    +F      +      +      L    +E
Sbjct: 216 RLADMHPDVPWSYRPIFSFLAAEEPDAVFSLVDSRYELLKGYEE 259


>gi|85814043|emb|CAH05238.1| DNA polymerase III, epsilon subunit [Micromonospora echinospora]
          Length = 386

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPI--HRWICTL-VLARSN-G 104
            +   + E L++    +VAHN  F+   L A      + +PI     +CT+ + +     
Sbjct: 49  QLAGQIAELLKD--RVVVAHNLSFDARFLTAEFERLGIAVPIDAASGLCTMRLASHFLPA 106

Query: 105 LPSALKAVGEALKLSSQ 121
               L+     L L   
Sbjct: 107 AGRGLRDCRRLLDLPDH 123


>gi|91223500|ref|ZP_01258765.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|254228411|ref|ZP_04921837.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
 gi|262393546|ref|YP_003285400.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|269966277|ref|ZP_06180366.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
 gi|91191586|gb|EAS77850.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|151938999|gb|EDN57831.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
 gi|262337140|gb|ACY50935.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|269829192|gb|EEZ83437.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
          Length = 240

 Score = 40.9 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 11/98 (11%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPIH------RWIC 95
            L D      + Q   E +      +VAHN+ F+   +   F  LD  I       +   
Sbjct: 77  FLVDKPEYASVHQEFLEFI--KGAELVAHNAPFDTGFMDYEFGMLDPNIGKTDDYCKVTD 134

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           TL +A+         L  + E   + +        L+ 
Sbjct: 135 TLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|331019245|gb|EGH99301.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 259

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 38/152 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            ++ +D ET     +      +  E  CV L           ++                
Sbjct: 9   RSIVLDTETTG---MPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHG 65

Query: 52  -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPI 90
                         +     E +      ++ HN+ F+   +   F L            
Sbjct: 66  ITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRH 123

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + + TL++AR        +L A+ +   + +
Sbjct: 124 CKILDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|330963305|gb|EGH63565.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 259

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 38/152 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            ++ +D ET     +      +  E  CV L           ++                
Sbjct: 9   RSIVLDTETTG---MPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHG 65

Query: 52  -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPI 90
                         +     E +      ++ HN+ F+   +   F L            
Sbjct: 66  ITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRH 123

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + + TL++AR        +L A+ +   + +
Sbjct: 124 CKILDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|213968849|ref|ZP_03396990.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato T1]
 gi|301384105|ref|ZP_07232523.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059179|ref|ZP_07250720.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           K40]
 gi|302135017|ref|ZP_07261007.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926452|gb|EEB60006.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato T1]
          Length = 259

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 38/152 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            ++ +D ET     +      +  E  CV L           ++                
Sbjct: 9   RSIVLDTETTG---MPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHG 65

Query: 52  -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPI 90
                         +     E +      ++ HN+ F+   +   F L            
Sbjct: 66  ITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRH 123

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + + TL++AR        +L A+ +   + +
Sbjct: 124 CKILDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|157964642|ref|YP_001499466.1| ribonuclease D [Rickettsia massiliae MTU5]
 gi|157844418|gb|ABV84919.1| Ribonuclease D [Rickettsia massiliae MTU5]
          Length = 284

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/260 (9%), Positives = 67/260 (25%), Gaps = 45/260 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E             +Y     + +     +++   +    +      +  + L +
Sbjct: 26  LSIDTE----------FERRYTYYAQLSIIQVKAEEYCGIIDALSNLD--LNIFNKLLAD 73

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEAL-KLSS 120
            ++T + H    +  +    F             + A   G    L    +   L  ++ 
Sbjct: 74  NNITKIFHAPREDLEIFYNLF--KTLPANVFDIQIAANICGFGKQLSYDDLCYKLIGITI 131

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +    + R                           Y   DV     ++K  + L++
Sbjct: 132 DKTHQKSNWLKRPITS-------------------DMLNYAMLDVE---YLYKIYKELNN 169

Query: 181 KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ------ELESLTYGLVSSSR 234
                   ++        +DV      ++    +            +++ L      +++
Sbjct: 170 IIIRNNLTNKYQTTLSSLLDVRNYKVESKDAWKKIKYRSDDKSFNHKIQMLAAYREENAQ 229

Query: 235 CLEKLKTWLFLETGLHLEDL 254
            +   +    L+  L     
Sbjct: 230 TINIPRKHFILDEDLIKLSK 249


>gi|28870866|ref|NP_793485.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28854115|gb|AAO57180.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 257

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 38/152 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            ++ +D ET     +      +  E  CV L           ++                
Sbjct: 7   RSIVLDTETTG---MPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHG 63

Query: 52  -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPI 90
                         +     E +      ++ HN+ F+   +   F L            
Sbjct: 64  ITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRH 121

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + + TL++AR        +L A+ +   + +
Sbjct: 122 CKILDTLMMARERHPGQRNSLDALCKRYGVDN 153


>gi|148261351|ref|YP_001235478.1| ribonuclease D [Acidiphilium cryptum JF-5]
 gi|146403032|gb|ABQ31559.1| ribonuclease D [Acidiphilium cryptum JF-5]
          Length = 392

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 42/165 (25%), Gaps = 21/165 (12%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
             + V + D   + +    L     N  VT V H    +  +                T 
Sbjct: 55  GANDVAVIDAQAEGLDLAPLGALFANPAVTKVFHACRQDIEIFL--LKFGAVPAPLFDTQ 112

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           V A   G        G+ +            L++    G   +     +      +    
Sbjct: 113 VAAMVAGF-------GDQVGYD--------TLVSSLAGGRIDKAHRFSDWSARPLSRAQ- 156

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
             Y   DV  T  +    E L ++      LD    +     D A
Sbjct: 157 IAYAAADV--TW-LRPVYEGLRARLTREGRLDWVAEEAAVLADPA 198


>gi|300870683|ref|YP_003785554.1| exonuclease [Brachyspira pilosicoli 95/1000]
 gi|300688382|gb|ADK31053.1| exonuclease [Brachyspira pilosicoli 95/1000]
          Length = 297

 Score = 40.9 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 30/187 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            T+F+D ET         G+      V VI     +D   ++++    +        + +
Sbjct: 98  KTVFLDIETT--------GMKPAKSYVTVIG---CYDGKDMQVFVHGKNER---DFLDYI 143

Query: 62  ENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           +N  + +V  N   F+   L+  FN  I   +            L   LK +G    L  
Sbjct: 144 KNYSI-VVTFNGSCFDIPFLERYFNTKIKCAQI----------DLRFVLKDLGYTGGLKK 192

Query: 121 QKMEEGKELIARFCKGETHECLYDRNK---PNHREAWRLFGEYCKGDV-TVTREIFKRLE 176
            + + G +          +  +   N         A      Y   D   +   +     
Sbjct: 193 IEKDVGIDRGDDMLGVNGYTAVLLWNYYLDTKDETAIDSLIHYNLLDTIDLEYLLCLAYN 252

Query: 177 PLSSKEQ 183
             + K +
Sbjct: 253 KYAEKYK 259


>gi|323464450|gb|ADX76603.1| DnaQ family exonuclease/DinG family helicase, putative
           [Staphylococcus pseudintermedius ED99]
          Length = 900

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 18/115 (15%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL---ARSNGLPSALKAVGEALK 117
            D   VAHN  F+   LK  F   ++     + I TL L   A        L  + E+L 
Sbjct: 84  KDCIFVAHNVNFDLNFLKRSFKKCHIHYQPKKVIDTLELFKIAFPTEKSYQLTELAESLG 143

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           +                + +I  F K E       +             +Y   D
Sbjct: 144 IPLTQAHRADEDAYTTARIMILAFEKFEVLPINTKKQLYY----LSKQLKYQLDD 194


>gi|195143871|ref|XP_002012920.1| GL23665 [Drosophila persimilis]
 gi|194101863|gb|EDW23906.1| GL23665 [Drosophila persimilis]
          Length = 903

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 61/231 (26%), Gaps = 27/231 (11%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E              +    C++  +    D    ++D +       VL   L 
Sbjct: 298 HIAIDVE--------HHSYRTFMGITCLVQMSTRTKD---YIFDSLALREEMHVLNLVLT 346

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEAL-KLSS 120
           +     + H +  +   L+   +L + +     T   A++  +   +L  + +    L  
Sbjct: 347 DPKKVKILHGADQDIEWLQR--DLSLYVVNMFDTHRAAKALNMARLSLAFLLKHYVDLDV 404

Query: 121 QKMEEGKE---------LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT-VTRE 170
            K  +  +         LI    +   +         N               V  ++ E
Sbjct: 405 DKSLQLADWRMRPLPQQLIDYARQDTHYLIYVYERMTNDILQAEQGQSQALRTVYQLSME 464

Query: 171 IFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           + K+         E          R    D    H L  +         QE
Sbjct: 465 VCKKRYTKPHIGPESHLDLVRKTKRS--FDNRQLHALRGLFQWRDATARQE 513


>gi|148807577|gb|ABR13589.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 147

 Score = 40.9 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 230 VSSSRCLEKLKTWL---FLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRS 286
             +    +++   L    ++  L  E       ++VL       P+A  +    +   + 
Sbjct: 46  EFNVXSRKQIAXRLEGVGVKFKLQTEKGAIIVNEKVLEGL--DIPEAKMI-YEYLMLQK- 101

Query: 287 AVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPR 331
              ++++       DGR+   +   GA  TGR +        +P 
Sbjct: 102 RAAQIDSWXTH-EKDGRVHRRVITNGA-VTGRMTHHCPNLTQVPS 144


>gi|229058278|ref|ZP_04196665.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH603]
 gi|228720049|gb|EEL71635.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH603]
          Length = 934

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 37/145 (25%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMP 54
             + +D ET         D          ED  ++   F    +P             + 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEI-FSSFINPKREIPLFITELTGID 62

Query: 55  QVLK---EALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
           + L        +              VAHN +F+   L                I T+ L
Sbjct: 63  EDLVKQAPLFRDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|228476288|ref|ZP_04060989.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis
           SK119]
 gi|314936052|ref|ZP_07843401.1| exonuclease [Staphylococcus hominis subsp. hominis C80]
 gi|228269571|gb|EEK11077.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus hominis
           SK119]
 gi|313655869|gb|EFS19612.1| exonuclease [Staphylococcus hominis subsp. hominis C80]
          Length = 185

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 19/135 (14%)

Query: 4   LFIDFETR-------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQ- 55
           + +DFET          + + K    +  E    ++    +          +H   +   
Sbjct: 7   IALDFETANKKRTSICSVGMVKVVDNEIVETFYTLVNPHDYFSETHIHVHGIHPKDVKDA 66

Query: 56  ----VLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR--SNG 104
                +   +      + +VAHN+ F+  VL       N+ +P   + C+  LAR     
Sbjct: 67  PDFKEVFPYMLQFINQLPVVAHNAAFDMGVLHQSLKHLNIAVPSLTYFCSYQLARRTIKA 126

Query: 105 LPSALKAVGEALKLS 119
               LK +     L+
Sbjct: 127 YRYGLKHLMNHYNLN 141


>gi|21702589|gb|AAM75986.1|AF481102_22 DNA polymerase III epsilon subunit [Candidatus Tremblaya princeps]
          Length = 203

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 32/149 (21%), Gaps = 39/149 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----LWD----CVHDPVM 53
             + +D ET            +Y     V                   +           
Sbjct: 4   RYVVLDTETTGLSP-------RYHRLAEVGCVEIACGRITGNFFHSYINPRQRMTRGAQA 56

Query: 54  PQVLKEALENTDVTI----------------VAHNSYFERTVLKACF---NLDIP---IH 91
              L++       T                 V HN  F+   L A              H
Sbjct: 57  VHRLRDEFLAEQPTFRAIAQRLLFFLCRSTLVGHNLSFDLNFLDAGLATAGFMPAARYCH 116

Query: 92  RWICTLVLARSNGLPS--ALKAVGEALKL 118
             I T++     G     +L A  + L +
Sbjct: 117 GVIDTMLHLAQRGRRRRFSLDACCDRLGV 145


>gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974]
 gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1463

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP195]
 gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17570]
          Length = 1463

 Score = 40.9 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1432

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 15/135 (11%)

Query: 36  GFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHR 92
              D  V + D   +  + +  KE   +    +  HN  F+   +        L+     
Sbjct: 468 SITDEMVGVAD--DEKDVIKKFKEFYGD--RPLCGHNVQFDVGFVNAALRRAGLEEITQP 523

Query: 93  WICTLVLARSNGLP---SALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNK 147
            + TL ++R          L ++ +     L              +   +  +   +R  
Sbjct: 524 VVDTLEVSRLLHPEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNER-- 581

Query: 148 PNHREAWRLFGEYCK 162
             H        +Y K
Sbjct: 582 -FHEADLGKMNDYAK 595


>gi|163856858|ref|YP_001631156.1| hypothetical protein Bpet2546 [Bordetella petrii DSM 12804]
 gi|163260586|emb|CAP42888.1| conserved hypothetical protein [Bordetella petrii]
          Length = 259

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 60/218 (27%), Gaps = 46/218 (21%)

Query: 3   TLFIDFETRSPID-LTKC-GICKYAEDVC------------------------VILFAFG 36
           TL  D ET   +D L K  G      D                          + +    
Sbjct: 4   TLVFDLETLPDVDGLRKLNGWGADVPDAEVAERAFQARREAVGHDFLPLHLQRIAVIGCV 63

Query: 37  FDDHPVELWDCVHDPVMPQV-----LKEALENTDVTIVAHNSY-FERTVLK-ACFNLDIP 89
           F D        +  P  P+        + +E     +V+ N   F+  VL        +P
Sbjct: 64  FRDDQGFRVKTLGQPDDPEAALISGFFKTIERYTPRLVSWNGSGFDLPVLHYRSLIHGVP 123

Query: 90  IHRWICTL----------VLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFCKGET 138
             R+  T            ++R +     L   + +    ++  ++E  +L     K   
Sbjct: 124 APRYWDTGDDDREFKFNNYISRYHTRHIDLMDLLAKYNGRANAPLDELAKLCGFPGKLGM 183

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                       +        YC+ DV  T  ++ R  
Sbjct: 184 D--GGQVWPAWQQGKADEVRAYCETDVVNTWLVYCRFR 219


>gi|124023602|ref|YP_001017909.1| DNA polymerase III subunit epsilon [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963888|gb|ABM78644.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9303]
          Length = 321

 Score = 40.9 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 24/138 (17%)

Query: 4   LFIDFETRSPIDLT----KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL-- 57
           L ID ET           + G   +      +L    F   PVE         +P  +  
Sbjct: 92  LIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLL-PVETNAAESINRIPAEVTR 150

Query: 58  -----------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--VL---AR 101
                       +AL +    +VAHN+ F+R        L      W+CT+  +     R
Sbjct: 151 LDQPWRQGLDYFQALLDAADLLVAHNAGFDRQWFGKDQ-LPAVSKPWLCTMEDIAWPVDR 209

Query: 102 SNGLPSALKAVGEALKLS 119
                 +++ +  A  + 
Sbjct: 210 QLRSRPSVRDLALAYGVP 227


>gi|255632121|gb|ACU16413.1| unknown [Glycine max]
          Length = 208

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 55/175 (31%), Gaps = 35/175 (20%)

Query: 2   ATLFIDFE-TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
             + +D E T +     K  I +   +   ++                H   +PQ L+  
Sbjct: 56  RIVGLDTEWTTAKKPKMKVAILQLCIENKCLIIQ------------LFHMDNIPQSLRSF 103

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP----SALKAVGEAL 116
           L +++   V      +  +LK  + L+      I   +LA+          ALK +    
Sbjct: 104 LMDSNFEFVGVGVINDLRMLKNDYGLECNKG--IDVSLLAKEKWPHRISSGALKYLA--- 158

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                     KEL+    +     C  +      +E  +   EY   D   + +I
Sbjct: 159 ----------KELVGLEMEKSKAVCTSEWQ---SKELTQTQIEYACIDAYASFKI 200


>gi|170722630|ref|YP_001750318.1| DNA polymerase III subunit epsilon [Pseudomonas putida W619]
 gi|169760633|gb|ACA73949.1| DNA polymerase III, epsilon subunit [Pseudomonas putida W619]
          Length = 254

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-------- 92
              L        + +   E ++    T+V HN+ F+   +   F L     R        
Sbjct: 67  DAFLVGKPRFGDVAEEFFEFIQ--GATLVIHNAAFDVGFINNEFALLGQRDRADISQHCT 124

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL+LAR+       +L A+ +   + +
Sbjct: 125 ILDTLLLARARHPGQRNSLDALCKRYDIDN 154


>gi|158316934|ref|YP_001509442.1| 3'-5' exonuclease [Frankia sp. EAN1pec]
 gi|158112339|gb|ABW14536.1| 3'-5' exonuclease [Frankia sp. EAN1pec]
          Length = 499

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 24/130 (18%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEA-LKLSSQK 122
           D   V H +  +   L     L +       T +  R  G     L A+ E  L    +K
Sbjct: 133 DTEWVLHAASQDLPCLAE---LGLRPKTLFDTELAGRLLGYERVGLGAMVERVLGFGLEK 189

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKE 182
              G        +                E W     Y   DV +  E+  +LE     +
Sbjct: 190 ---GHSAADWSNRPL-------------PEPW---LRYAALDVELLVELRDQLESELVAQ 230

Query: 183 QELWYLDQTI 192
            ++ +  Q  
Sbjct: 231 NKMAFARQEF 240


>gi|145520595|ref|XP_001446153.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413630|emb|CAK78756.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1331

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 2   ATLFIDFET---RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW--DCVHDPVMPQV 56
             + ID E    +  I L + G+    E++ +I     FD    +    D V    M  V
Sbjct: 843 NYIGIDLEGQLRKGDIWLVQMGVM--VENLRIIFI---FDLMKAKYLEADLVFHEQMLSV 897

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
           ++  LE+  +  V H+   +   L       I       T
Sbjct: 898 IRSILEDEGICKVFHDCKRDSQAL---HINQICPRNIADT 934


>gi|115943126|ref|XP_783820.2| PREDICTED: similar to Vexonuclease 3-5 domain-like 1
           [Strongylocentrotus purpuratus]
 gi|115973892|ref|XP_001185100.1| PREDICTED: similar to Vexonuclease 3-5 domain-like 1
           [Strongylocentrotus purpuratus]
          Length = 819

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 56/234 (23%), Gaps = 28/234 (11%)

Query: 39  DHPVELWDCVHDPVM-PQVLKEALENTDVTIVAHNSYF--ERTVLKACFNLDIPIHRWIC 95
           D  V ++D +  P +  +   + L+ T++T V H+  F  +   L   + +++       
Sbjct: 202 DEQVYMFDVLAVPSLFTRKFIDILQATNITKVIHDCRFVSDL--LYHHYGIELN--SVFD 257

Query: 96  TLVLA-------RSNGLPSALKAVGE-ALKLSSQKMEEGK-ELIARFCKGETHECLYDRN 146
           T V              P  +    +  L+     + +    L       E     + R 
Sbjct: 258 TQVGDILIKRRQYMGDFPRNVSGTTQCILEYLEISIHDIALHLENTQRIEEDESSWFQRP 317

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL-WYLDQTINDRGYCVDVALAH 205
            P               D      + + +      E      +  T+      VD     
Sbjct: 318 LPKVNIRC------ALLDTVYLLRLREAITEQLMAEFTCAIDIYLTVERDRLEVDPKKLS 371

Query: 206 TLNQIVDVERTKLDQELESLTYG-----LVSSSRCLEKLKTWLFLETGLHLEDL 254
           +    V  E         +                          E G      
Sbjct: 372 SRASYVPRELINDLHRRVTQMGMSSTRVKPKELSFPPASLANPGQEQGQPPPKG 425


>gi|33601993|ref|NP_889553.1| hypothetical protein BB3017 [Bordetella bronchiseptica RB50]
 gi|33576431|emb|CAE33509.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 259

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 16/160 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLK-ACFNLDIPIHRWICTL------ 97
               +  +     + +E     +V+ N   F+  VL        +P  R+  T       
Sbjct: 78  PDDPEAALLSGFFKTIERYTPRLVSWNGSGFDLPVLHYRSLIHGVPAPRYWDTGDEDRDF 137

Query: 98  ----VLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                ++R +     L   + +    ++  ++E  +L     K           +  ++ 
Sbjct: 138 KFNNYISRYHNRHIDLMDLLAKYNGRANAPLDELAKLCGFPGKLGMDGSKV--WEAWNQG 195

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                  YC+ DV  T  ++ R       E +    D  I
Sbjct: 196 KADEVRAYCETDVVNTWLVYCRFR-FLRGELDRVAYDAEI 234


>gi|319892447|ref|YP_004149322.1| DinG family ATP-dependent helicase YoaA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162143|gb|ADV05686.1| DinG family ATP-dependent helicase YoaA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 900

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 18/115 (15%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL---ARSNGLPSALKAVGEALK 117
            D   VAHN  F+   LK  F   ++     + I TL L   A        L  + E+L 
Sbjct: 84  KDCIFVAHNVNFDLNFLKRSFKKCHIHYQPKKVIDTLELFKIAFPTEKSYQLTELAESLG 143

Query: 118 L--------SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
           +                + +I  F K E       +             +Y   D
Sbjct: 144 IPLTQAHRADEDAYTTARIMILAFEKFEVLPINTKKQLYY----LSKQLKYQLDD 194


>gi|317051112|ref|YP_004112228.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
 gi|316946196|gb|ADU65672.1| DNA-directed DNA polymerase [Desulfurispirillum indicum S5]
          Length = 169

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 38/140 (27%), Gaps = 27/140 (19%)

Query: 1   MAT-LFIDFETRSPIDLTKCGICKYA----EDVCV-----------ILFAFGFDDHPVEL 44
           M T + ID ET          + + A    E   V           +  +          
Sbjct: 1   MNTFVAIDVETTGLSPARGARVIEIAAVKMEQGQVIAEFCSLIQVGVPVSAATTGVHGIT 60

Query: 45  WDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLV 98
              +     P  +            IVAHN+ F+       L+    L +  +   CTL 
Sbjct: 61  TAMLAGQPAPGEIWPQFIWFIEHHPIVAHNAPFDMRFVHSELQR-LGLSMA-NPSHCTLR 118

Query: 99  LA---RSNGLPSALKAVGEA 115
           L            L+ + + 
Sbjct: 119 LGRRKYPRLPNHKLEYLAQH 138


>gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
 gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
 gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 315

 Score = 40.9 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 26/161 (16%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++     P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                +     L+ +   L +         + I      + 
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167


>gi|332882913|ref|ZP_08450520.1| 3'-5' exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679121|gb|EGJ52111.1| 3'-5' exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 206

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 45/170 (26%), Gaps = 29/170 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D ETR      K    K A      L     DD    L+   H   + + +K  L+
Sbjct: 46  VLGVDTETR--PSFRKGCTNKVA------LLQVSTDD-TCFLFRLNHIG-VTESVKRLLQ 95

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           + +V  V  +   +   L      +     ++              L+    A  +    
Sbjct: 96  DENVLKVGLSLRDDFASL--HKRGEFEPRAFLD-------------LQDYVRAFGIEDMS 140

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           +++    I     G+                      Y   D      ++
Sbjct: 141 LQKLYANI----FGQKISKGQRLTNWEADVLTEGQKLYAATDAWACIRLY 186


>gi|332203439|gb|EGJ17506.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47368]
          Length = 1463

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD]
          Length = 1457

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 20/126 (15%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLP 106
                 +K+  +N+   +VAHN+ F+   L   F  ++ ++      I TL ++R     
Sbjct: 471 EEAAIKIKQIFQNS--ILVAHNARFDYGCLVEFFK-ELELYELEQPVIDTLEVSRFLAPT 527

Query: 107 ---SALKAVG----------EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
                LK +           E+ +         K       K          +       
Sbjct: 528 QKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFLIKLIEKNIKDLNSLNQVGSN 587

Query: 154 WRLFGE 159
              F  
Sbjct: 588 ILDFKR 593


>gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 1457

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 20/126 (15%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH----RWICTLVLARSNGLP 106
                 +K+  +N+   +VAHN+ F+   L   F  ++ ++      I TL ++R     
Sbjct: 471 EEAAIKIKQIFQNS--ILVAHNARFDYGCLVEFFK-ELELYELEQPVIDTLEVSRFLAPT 527

Query: 107 ---SALKAVG----------EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
                LK +           E+ +         K       K          +       
Sbjct: 528 QKRHNLKELAKNASIHYDETESHRGGYDAEVLAKVWDQFLIKLIEKNIKDLNSLNQVGSN 587

Query: 154 WRLFGE 159
              F  
Sbjct: 588 ILDFKR 593


>gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA]
 gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC0288-04]
 gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae JJA]
          Length = 1463

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNAAFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|146310412|ref|YP_001175486.1| DNA polymerase III subunit epsilon [Enterobacter sp. 638]
 gi|145317288|gb|ABP59435.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
          Length = 245

 Score = 40.9 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGRNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACF---NLDI 88
                  + D  +    K    +             +V HN+ F+   +   F   N +I
Sbjct: 64  EAFGVHGIADEFLLD--KPTFADVADEFIEYINGAELVIHNASFDIGFMDYEFSKLNRNI 121

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTNTFCKVTDSLALARKMYPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|301066020|ref|YP_003788043.1| DNA polymerase III subunit epsilon [Lactobacillus casei str. Zhang]
 gi|300438427|gb|ADK18193.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei str. Zhang]
          Length = 180

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAEDVCVIL---FAFGFDDHPVELW--DCV 48
           M  + +DFET          + L      K  +    ++     F   +  +     + V
Sbjct: 1   MDFIAMDFETANRKRASACSLALVVVQQNKVVDSFYTLINPQMQFDAQNIHIHGITPEMV 60

Query: 49  HDPVMPQVLKEALE---NTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            D      +   ++        + AHN+ F+ +V++     + +  P ++ I T+  +R 
Sbjct: 61  QDQPTFDQVWPHIQMFYTPGRIVTAHNAPFDVSVMRLTLDRYGIAAPRYQVIDTVKTSRQ 120

Query: 103 N---GLPSALKAVGEALKLS 119
                    L  V  AL + 
Sbjct: 121 FLPKLPNHRLDTVSAALHIP 140


>gi|227889650|ref|ZP_04007455.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii ATCC
           33200]
 gi|268319793|ref|YP_003293449.1| DNA polymerase III epsilon subunit [Lactobacillus johnsonii FI9785]
 gi|227849793|gb|EEJ59879.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii ATCC
           33200]
 gi|262398168|emb|CAX67182.1| DNA polymerase III epsilon subunit [Lactobacillus johnsonii FI9785]
          Length = 177

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI-----LF--AFGFDDHPVELW-----DC 47
           M    +DFET +    + C +      +  ++     +      FD   + +      D 
Sbjct: 1   MNFTAMDFETANSHPESACSLALVMVRNNEIVDRFYTVINPQMPFDGRNIRIHGITAEDI 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHN+ F+  V++     +N+  P +  I TL  +++
Sbjct: 61  KNAPTMAEVWPKIKKLYQPGMLVAAHNARFDCRVMEKSLARYNIPAPHYFAIDTLATSKA 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V EAL ++
Sbjct: 121 FEPYLPNHKLDTVSEALNIN 140


>gi|227501727|ref|ZP_03931776.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
 gi|227077752|gb|EEI15715.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
           49725]
          Length = 223

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 27/144 (18%)

Query: 2   ATLFIDFETRSPID----LTKCGICK----------YAEDVCVILFAFGFD-----DHPV 42
             L  D ET S       +    + +          +  D  + +     D         
Sbjct: 7   RMLAFDLETTSANPKDARIVTSALVRIDGRDVQKVEHLADPGIEIPQAATDVHGITTEKA 66

Query: 43  ELWDCVHDPVM---PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
           +     H+ V+      +KEA  +  +T++ +N+ F+ TVL++               V+
Sbjct: 67  QAEGHPHEEVLKNTVDAIKEAW-DDGLTLIVYNAAFDLTVLRSLTGDFTVTGPVFDPYVI 125

Query: 100 ARSNGL----PSALKAVGEALKLS 119
            R +         L AV E   + 
Sbjct: 126 DRVSDKWRKGKRTLGAVCEHYGVE 149


>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1434

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 22/139 (15%)

Query: 3   TLFIDFETRSPI----------DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--- 49
            +  D ET               +   G     +   +I           E+    +   
Sbjct: 421 YVVFDTETTGLNASEHTIIEIAAVKMKGAEIIDQWTELIDPQLQIGPKTTEITGITNEML 480

Query: 50  -DPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSN 103
                  V+    ++   D  +VAHN+ F++  +        ++   + ++ TL LAR  
Sbjct: 481 RGQETLDVVLRKFKDFTGDAILVAHNAEFDKAFINACAKRIGMEPWTNPFLDTLPLARLM 540

Query: 104 GLP---SALKAVGEALKLS 119
                   L ++ +   + 
Sbjct: 541 YKGMRNYRLGSLAKKFNVE 559


>gi|119962304|ref|YP_947556.1| ribonuclease D [Arthrobacter aurescens TC1]
 gi|119949163|gb|ABM08074.1| putative ribonuclease D [Arthrobacter aurescens TC1]
          Length = 453

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 39/137 (28%), Gaps = 25/137 (18%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L     +     L D      +  ++ +AL    V  + H +  +   L     L +   
Sbjct: 86  LVQIRREGAGTWLIDPEPFDNL-DIINDALR--GVEWILHAASQDLPCLSE---LGMWPD 139

Query: 92  RWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNH 150
           +   T + AR  GLP   L AV E L                           D +    
Sbjct: 140 KLFDTELAARLAGLPRVGLAAVIEQL---------------LGFGLAKEHSAADWSTRPL 184

Query: 151 REAWRLFGEYCKGDVTV 167
            E W     Y   DV V
Sbjct: 185 PEPW---LRYAALDVEV 198


>gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom
           phytoplasma]
          Length = 1492

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 48  VHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
            H   +     + + +  +  +VAHN+ F+   L+       L  P+   I TL LA
Sbjct: 470 PHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLPVIDTLTLA 526


>gi|332883628|gb|EGK03909.1| hypothetical protein HMPREF9456_01450 [Dysgonomonas mossii DSM
           22836]
          Length = 1249

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSAL-KAVGEALKL-SSQKMEE 125
             ++  +++      + + +   +    ++L+R            + +A+      KM  
Sbjct: 749 ISYDIPIMERYLNDTYGITVYQEQV---MLLSRLLADFTRGQSDELRKAMGKKLIDKMNA 805

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            KE   +F  G T      +        W  F  Y 
Sbjct: 806 LKE---KFIAGGTKNGHQKKTLEKIWADWEKFASYA 838


>gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
 gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. C300]
          Length = 1463

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E     +  +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFC--KNTVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +EA   
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEAAEK 591


>gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
 gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
 gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
           TX0630]
          Length = 929

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P ++                 
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQVVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYDFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|229090605|ref|ZP_04221839.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-42]
 gi|228692748|gb|EEL46473.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-42]
          Length = 934

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      E+              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|33592793|ref|NP_880437.1| hypothetical protein BP1722 [Bordetella pertussis Tohama I]
 gi|33572441|emb|CAE42009.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382206|gb|AEE67053.1| hypothetical protein BPTD_1700 [Bordetella pertussis CS]
          Length = 259

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 16/160 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLK-ACFNLDIPIHRWICTL------ 97
               +  +     + +E     +V+ N   F+  VL        +P  R+  T       
Sbjct: 78  PDDPEAALLSGFFKTIERYTPRLVSWNGSGFDLPVLHYRSLIHGVPAPRYWDTGDEDRDF 137

Query: 98  ----VLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                ++R +     L   + +    ++  ++E  +L     K           +  ++ 
Sbjct: 138 KFNNYISRYHNRHIDLMDLLAKYNGRANAPLDELAKLCGFPGKLGMDGSKV--WEAWNQG 195

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                  YC+ DV  T  ++ R       E +    D  +
Sbjct: 196 KADEVRAYCETDVVNTWLVYCRFR-FLRGELDRVAYDAEV 234


>gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
 gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
           iheyensis HTE831]
          Length = 1428

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           D      + +     + N    +VAHN+ F+   L   F   + +   +  + TL LAR 
Sbjct: 475 DAPEVADVLKDFHTWMGND--ILVAHNASFDMGFLNQGFQRIDYEKASNPVVDTLELARF 532

Query: 103 NGL---PSALKAVGEALKLS 119
                    L  + + L + 
Sbjct: 533 LLPELRNHRLNTLCKHLDIE 552


>gi|15642231|ref|NP_231864.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586228|ref|ZP_01676018.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
 gi|121726541|ref|ZP_01679790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
 gi|147674786|ref|YP_001217749.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153213799|ref|ZP_01949007.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
 gi|153817083|ref|ZP_01969750.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|153820811|ref|ZP_01973478.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
 gi|227082357|ref|YP_002810908.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2]
 gi|229507692|ref|ZP_04397197.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229512113|ref|ZP_04401592.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229519248|ref|ZP_04408691.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229607196|ref|YP_002877844.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254849364|ref|ZP_05238714.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255747069|ref|ZP_05421014.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262161386|ref|ZP_06030496.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262167744|ref|ZP_06035446.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|298500392|ref|ZP_07010197.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
 gi|9656792|gb|AAF95377.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121549494|gb|EAX59520.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
 gi|121630994|gb|EAX63373.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
 gi|124115723|gb|EAY34543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
 gi|126512351|gb|EAZ74945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
 gi|126521603|gb|EAZ78826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
 gi|146316669|gb|ABQ21208.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|227010245|gb|ACP06457.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2]
 gi|227014129|gb|ACP10339.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229343937|gb|EEO08912.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229352078|gb|EEO17019.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229355197|gb|EEO20118.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229369851|gb|ACQ60274.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254845069|gb|EET23483.1| DNA polymerase III [Vibrio cholerae MO10]
 gi|255735471|gb|EET90871.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262023809|gb|EEY42508.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262028697|gb|EEY47351.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|297541085|gb|EFH77139.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
          Length = 247

 Score = 40.9 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSN 103
             + +   + +      +VAHN+ F+   +   F              +   TL +A+  
Sbjct: 85  KDVHEEFVDFI--KGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFCKVTDTLAMAKRI 142

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  L  + E   + +        L+ 
Sbjct: 143 FPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|296453936|ref|YP_003661079.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
 gi|296183367|gb|ADH00249.1| 3'-5' exonuclease [Bifidobacterium longum subsp. longum JDM301]
          Length = 433

 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 22/117 (18%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D T + H+S  +         + +       T + AR  GL    L AV E         
Sbjct: 95  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHY------- 144

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                L     K  +      R  P      R +  Y   DV V  E+   +     
Sbjct: 145 -----LGITLAKEHSAADWSYRPLP------RDWRNYAALDVEVLIELETLMRRDLK 190


>gi|213692580|ref|YP_002323166.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524041|gb|ACJ52788.1| 3'-5' exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458732|dbj|BAJ69353.1| putative exonuclease [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 433

 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 22/117 (18%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D T + H+S  +         + +       T + AR  GL    L AV E         
Sbjct: 95  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHY------- 144

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                L     K  +      R  P      R +  Y   DV V  E+   +     
Sbjct: 145 -----LGITLAKEHSAADWSYRPLP------RDWRNYAALDVEVLIELETLMRRDLK 190


>gi|27383194|ref|NP_774723.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
           110]
 gi|27356368|dbj|BAC53348.1| bll8083 [Bradyrhizobium japonicum USDA 110]
          Length = 304

 Score = 40.9 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 21/103 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICK------YAEDVCVILF--AFGFDDHPVELWD------- 46
             +FID ET     +    +        Y++D  +     +F     P            
Sbjct: 46  RAVFIDLETTGLDPVADEIVEIAMVPFDYSDDGRIFAVHESFARFRDPGRPIPPEVSAMT 105

Query: 47  ------CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC 83
                      + P  ++  L +T   +VAHN  F+R   +  
Sbjct: 106 GITDAMVAGAAIEPAEIEAFLGDTAALVVAHNCSFDRRFAERF 148


>gi|307946769|ref|ZP_07662104.1| ribonuclease D [Roseibium sp. TrichSKD4]
 gi|307770433|gb|EFO29659.1| ribonuclease D [Roseibium sp. TrichSKD4]
          Length = 330

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 57/181 (31%), Gaps = 23/181 (12%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           + + +VT V H +  +  ++       +       + V A   G   ++       K++ 
Sbjct: 1   MADRNVTKVFHAARQDVEIV-YHLG-KLIPAPLFDSQVAAMVCGFGDSISYDQLVYKVTG 58

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                     A+  K         R     +       EY   DVT  R++++ L+   +
Sbjct: 59  ----------AQIDKSSRFTDWSRRPLTQKQ------LEYALADVTHLRDVYQFLKANLA 102

Query: 181 KEQELWYLDQTIN----DRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
           ++    ++   +     +  Y  +   A    + + V + K    +  +       ++  
Sbjct: 103 EQGRSHWVQDEMEILTSENTYRSEPENAWKRLK-MRVRKPKELAVMMEVAAWREKEAQSR 161

Query: 237 E 237
            
Sbjct: 162 N 162


>gi|294827794|ref|NP_711304.2| putative exonuclease [Leptospira interrogans serovar Lai str.
           56601]
 gi|293385639|gb|AAN48322.2| predicted exonuclease [Leptospira interrogans serovar Lai str.
           56601]
          Length = 256

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 27/187 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L++D ET    +  +  +    +                      +     + L    
Sbjct: 84  KLLYMDIETTGLGNDDRTTVIGTFDGYEYRS-----------YIRGFNLDFFLENL---- 128

Query: 62  ENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            + D   V++N   F+   L+  FN+    +     +   RS G+   LK   + L +  
Sbjct: 129 -SQDQIFVSYNGIAFDVPFLEREFNVRFRNNHI-DIMFFLRSLGIRGGLKGCEKTLGV-- 184

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIFKRLEPLS 179
                          G     L+ +          ++  EY + D      +F +   L 
Sbjct: 185 ------HRPETAAITGIEAVNLWKQYVDYDDMDALKILEEYNREDTVNLEILFIKGYNLK 238

Query: 180 SKEQELW 186
            KE   +
Sbjct: 239 IKETPFY 245


>gi|268319456|ref|YP_003293112.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785]
 gi|262397831|emb|CAX66845.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785]
          Length = 938

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN---GLPSAL 109
            +++ LEN     VAHN  F+   L        L+    + + T+ LA+          L
Sbjct: 82  KIRKILEN--TIFVAHNVNFDLPFLNYELVNAGLEPLTGKAVDTVELAQIVFPTFPSYKL 139

Query: 110 KAVGEALKLSS 120
           + +   L++  
Sbjct: 140 RDLTARLRIKH 150


>gi|213029040|ref|ZP_03343487.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 139

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDR----PITPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
 gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
 gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 315

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 26/161 (16%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++     P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                +     L+ +   L +         + I      + 
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167


>gi|146312020|ref|YP_001177094.1| ribonuclease D [Enterobacter sp. 638]
 gi|145318896|gb|ABP61043.1| ribonuclease D [Enterobacter sp. 638]
          Length = 384

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 51/203 (25%), Gaps = 46/203 (22%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---CVHDPVMPQ 55
           + +D E     T                   + L    +D   V L D         M  
Sbjct: 34  IALDTEFVRTRTYY---------------PQLGLIQM-YDGKNVSLIDPLGITDWSPM-- 75

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +E L NT +T   H    +  V    F +       I T +LA  +G P +       
Sbjct: 76  --RELLLNTAITKYLHAGSEDLEVFLNTFGI--MPEPLIDTQILAAFSGRPLSWGFAAMV 131

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
            + +   +++ +       +  T                    +Y   DV     I  +L
Sbjct: 132 EEYTGIALDKSESRTDWLARPLT----------------ERQLDYAAADVFYLLPIAGQL 175

Query: 176 EPLSSKEQELWYLDQTINDRGYC 198
              +     L             
Sbjct: 176 MKEAEAAGWLDAALNECRMTQQR 198


>gi|45658398|ref|YP_002484.1| hypothetical protein LIC12557 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601641|gb|AAS71121.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 255

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 27/187 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L++D ET    +  +  +    +                      +     + L    
Sbjct: 83  KLLYMDIETTGLGNDDRTTVIGTFDGYEYRS-----------YIRGFNLDFFLENL---- 127

Query: 62  ENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            + D   V++N   F+   L+  FN+    +     +   RS G+   LK   + L +  
Sbjct: 128 -SQDQIFVSYNGIAFDVPFLEREFNVRFRNNHI-DIMFFLRSLGIRGGLKGCEKTLGV-- 183

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLFGEYCKGDVTVTREIFKRLEPLS 179
                          G     L+ +          ++  EY + D      +F +   L 
Sbjct: 184 ------HRPETAAITGIEAVNLWKQYVDYDDMDALKILEEYNREDTVNLEILFIKGYNLK 237

Query: 180 SKEQELW 186
            KE   +
Sbjct: 238 IKETPFY 244


>gi|24374102|ref|NP_718145.1| DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
 gi|24348589|gb|AAN55589.1|AE015697_11 DNA polymerase III, epsilon subunit [Shewanella oneidensis MR-1]
          Length = 242

 Score = 40.9 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 50/176 (28%), Gaps = 51/176 (28%)

Query: 1   MATLF-------IDFETRSPIDLTKCGICKYAEDVCVILFAF------------------ 35
           M  +        +D ET     + +     Y     +I                      
Sbjct: 1   MNIISNASRQVILDTETTG---MNQGSGAVYLGH-RIIEIGCVEVINRRLTGRYYHQYIN 56

Query: 36  ---GFDDHPVELWDCVHDP--------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
                D   + +     +          + Q   + +  +   IVAHN+ F+ + +   F
Sbjct: 57  PGQAIDPEAIAVHGITDERVANEPRFHQIAQEFIDFI--SGAEIVAHNANFDVSFMDHEF 114

Query: 85  NLDIPIHR-------WICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           +L  P+          + +L +A+         L A+ +   + + +      L+ 
Sbjct: 115 SLLQPLGPKTRDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLD 170


>gi|328868531|gb|EGG16909.1| DNA polymerase III [Dictyostelium fasciculatum]
          Length = 782

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 30/152 (19%)

Query: 2   ATLFIDFETR---SPIDLTKCGI-------------CKYAE-DVCVILFAFGFDDHPVEL 44
             +  D ET    S   + + G                YA+    +   A    +    L
Sbjct: 401 RVICFDLETTGFGSEDSIIEVGAVELIDGCRTGLTFQSYAKPKAPIHPEAAKVHNLNAYL 460

Query: 45  WDCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLKA-CFNLDIPIHR---WICTLVL 99
                    +     + + +    +VAHN  F+  +L        IPI+R     CT+  
Sbjct: 461 LSSAPPIEFVLASFMDFVGDA--LLVAHNLAFDHRMLIQEMMRSKIPINRSKKCFCTMK- 517

Query: 100 ARSN----GLPSALKAVGEALKLSSQKMEEGK 127
                    +   L A+   LK+    +    
Sbjct: 518 -YYRKVIKDVSYNLDAISSQLKIDKLLLRRTH 548


>gi|325118112|emb|CBZ53663.1| Exonuclease 3'-5' domain-like-containing protein 1, related
           [Neospora caninum Liverpool]
          Length = 355

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
           + LKE LE+  +  V H+   + + L       I +     T V  
Sbjct: 119 KKLKEILESPHIVKVCHDCREDASALLHQ--HTIRLRNVFDTQVAH 162


>gi|325297487|ref|YP_004257404.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
 gi|324317040|gb|ADY34931.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
           salanitronis DSM 18170]
          Length = 183

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 25/142 (17%)

Query: 1   MATLFIDFETRSP--IDLTKCGICKYAEDVCVI----------LFAFGFDD------HPV 42
           +  + IDFET +     + + GI     +  V              + + +       P 
Sbjct: 4   INFIAIDFETATGKRASICEAGI-CVVRNGEVTKTRSWLVRPQGNRYSYWNMQIHGIRPN 62

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVL 99
           +  D    P +   + E L++  +  VAHN+ F+   ++     + ++ P   + C+L  
Sbjct: 63  DTVDSPEFPEVWAEISEYLKDIPIL-VAHNAAFDVGCIRHSLELYGMEKPDITYYCSLRA 121

Query: 100 ARSNGLPS--ALKAVGEALKLS 119
           AR        +L  + +  K+ 
Sbjct: 122 ARKLYDFGCNSLDYLCDQFKIP 143


>gi|289178849|gb|ADC86095.1| Ribonuclease D [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 440

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 52/182 (28%), Gaps = 31/182 (17%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQV--LKEALENTDVTIVAH 71
           D  +    +Y  +    L  F  D  P+ L D    D          EA+ + +   + H
Sbjct: 52  DAERASGYRYGHED--WLIQFKRDGAPIALLDPIALDEQGVDWNAFNEAVGDAE--WILH 107

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           +S  +         + +   R   T + A+  GL      VG A             L  
Sbjct: 108 DSRQDLPGFAQ---IGLKPRRLFDTEIAAKLLGLHR----VGLAY-------VTAHFLGI 153

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV----TVTREIFKRLEPLSSKEQELWY 187
              K  +      R  P      R +  Y   DV     + R +   L+     E     
Sbjct: 154 TLAKEHSAADWSYRPLP------RDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEE 207

Query: 188 LD 189
            D
Sbjct: 208 FD 209


>gi|229166488|ref|ZP_04294244.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH621]
 gi|228617062|gb|EEK74131.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH621]
          Length = 934

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 37/145 (25%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMP 54
             + +D ET         D          ED  ++   F    +P             + 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEI-FSSFINPKREIPLFITELTGID 62

Query: 55  QVLK---EALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
           + L        +              VAHN +F+   L                I T+ L
Sbjct: 63  EDLVKQAPLFRDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|84393455|ref|ZP_00992211.1| ribonuclease D [Vibrio splendidus 12B01]
 gi|84375883|gb|EAP92774.1| ribonuclease D [Vibrio splendidus 12B01]
          Length = 313

 Score = 40.5 bits (93), Expect = 0.84,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 27/145 (18%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           FD   + L D    D + P      L++T V  V H    +  V +  F         + 
Sbjct: 72  FDGETLSLIDPIALDEMTP--FVGLLKDTSVLKVLHACGEDLEVFQNAFG--CTPTPMVD 127

Query: 96  TLVLARSNGLPSALK---AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           T ++A   G   +      V E + +   K E   + +AR                    
Sbjct: 128 TQIMAAFLGHGLSTGFAALVSEFVGVDLDKSESRTDWLARPLS----------------- 170

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEP 177
             +   +Y   DV     ++ +L  
Sbjct: 171 --QKQLDYAAADVHYLMPMYNKLLE 193


>gi|331671578|ref|ZP_08372376.1| DNA polymerase II (Pol II) [Escherichia coli TA280]
 gi|331071423|gb|EGI42780.1| DNA polymerase II (Pol II) [Escherichia coli TA280]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 60/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFATHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  ---WICTLVLARSNG-------------LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                   V  R                   +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQVKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|302187967|ref|ZP_07264640.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae 642]
 gi|330952814|gb|EGH53074.1| DNA polymerase III subunit epsilon [Pseudomonas syringae Cit 7]
 gi|330972572|gb|EGH72638.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 259

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 41/152 (26%), Gaps = 38/152 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            ++ +D ET     +      +  E  CV L           ++                
Sbjct: 9   RSIVLDTETTG---MPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHG 65

Query: 52  -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPI 90
                         +     E +      ++ HN+ F+   +   F L            
Sbjct: 66  ITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQH 123

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
              + TL++AR        +L A+ +   + +
Sbjct: 124 CSILDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|227890026|ref|ZP_04007831.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849470|gb|EEJ59556.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC
           33200]
          Length = 938

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN---GLPSAL 109
            +++ LEN     VAHN  F+   L        L+    + + T+ LA+          L
Sbjct: 82  KIRKILEN--TIFVAHNVNFDLPFLNYELVNAGLEPLTGKAVDTVELAQIVFPTFPSYKL 139

Query: 110 KAVGEALKLSS 120
           + +   L++  
Sbjct: 140 RDLTARLRIKH 150


>gi|291287661|ref|YP_003504477.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884821|gb|ADD68521.1| DNA polymerase III, epsilon subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 228

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 41/136 (30%), Gaps = 23/136 (16%)

Query: 6   IDFETRSP--IDLTKCGICKY-AEDVCVILFAFGF-------DDHPVELWDCVH----DP 51
           ID ET      D     +     ++  +I F   F           ++  +       D 
Sbjct: 48  IDTETTGLDLNDARIINVAAVKVQNFKIIDFYNSFINPETEIPKESIQWHNITDEMVADK 107

Query: 52  VMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIPI---HRWICTLVL-ARSN-- 103
                +     N   D  IV H+  F+  ++             + W+ T+++ + +   
Sbjct: 108 PTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMMDSFSCQINNNWLDTMLIYSHAIIK 167

Query: 104 -GLPSALKAVGEALKL 118
                +L  + +   +
Sbjct: 168 KDERYSLDYLLDLYNV 183


>gi|220904848|ref|YP_002480160.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869147|gb|ACL49482.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 176

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 27/148 (18%)

Query: 4   LFIDFETRSPIDLTKCGIC-KYAEDVCV--------------ILFAFGFDDHPVELWDCV 48
           + IDFET      + C +     ED  V              +LF     +     W  +
Sbjct: 10  VAIDFETSGYAAHSACAVGLARIEDGRVTEQFYSLVRPPSSRVLFT----EIHGLTWPML 65

Query: 49  HDPVMPQVLKEALEN---TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR- 101
            +  +   +   +E+       ++AHN+ F+R VL          +P   ++CTL  AR 
Sbjct: 66  KNAPVFGDVWPQMESFMKGAGVLLAHNASFDRRVLLACCREAGAGVPEQHFLCTLKGARR 125

Query: 102 -SNGLPSALKAVGEALKLSSQKMEEGKE 128
                   L  V E   ++ +    G +
Sbjct: 126 SLPLPSKKLNHVCEHFGIALEHHHAGSD 153


>gi|71733799|ref|YP_273952.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289627521|ref|ZP_06460475.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649928|ref|ZP_06481271.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486280|ref|ZP_07004343.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554352|gb|AAZ33563.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298159287|gb|EFI00345.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330868357|gb|EGH03066.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330985658|gb|EGH83761.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012696|gb|EGH92752.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 259

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 41/152 (26%), Gaps = 38/152 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            ++ +D ET     +      +  E  CV L           ++                
Sbjct: 9   RSIVLDTETTG---MPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHG 65

Query: 52  -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPI 90
                         +     E +      ++ HN+ F+   +   F L            
Sbjct: 66  ITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQH 123

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
              + TL++AR        +L A+ +   + +
Sbjct: 124 CSILDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|66045009|ref|YP_234850.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255716|gb|AAY36812.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Pseudomonas syringae pv. syringae B728a]
          Length = 259

 Score = 40.5 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 41/152 (26%), Gaps = 38/152 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            ++ +D ET     +      +  E  CV L           ++                
Sbjct: 9   RSIVLDTETTG---MPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHG 65

Query: 52  -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPI 90
                         +     E +      ++ HN+ F+   +   F L            
Sbjct: 66  ITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQH 123

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
              + TL++AR        +L A+ +   + +
Sbjct: 124 CSILDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|325860343|ref|ZP_08173463.1| DNA polymerase III, alpha subunit [Prevotella denticola CRIS 18C-A]
 gi|325482149|gb|EGC85162.1| DNA polymerase III, alpha subunit [Prevotella denticola CRIS 18C-A]
          Length = 1239

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 10/115 (8%), Positives = 34/115 (29%), Gaps = 14/115 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLP 106
             +P  +K    +  +        ++   ++      + + +   +    ++L+R     
Sbjct: 720 DYIPDFIKRK-NDPSLVK------YDIPCMEKYLKDTYGITVYQEQV---MLLSRQLANF 769

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           +  ++      +  +K     ++  +F K         +        W  F  Y 
Sbjct: 770 TRGESDALRKAMGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYA 824


>gi|123442616|ref|YP_001006593.1| ribonuclease D [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122089577|emb|CAL12426.1| ribonuclease D [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 373

 Score = 40.5 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 60/217 (27%), Gaps = 48/217 (22%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV- 56
            + +D E     T                   + L    +D   + L D +    + Q  
Sbjct: 24  HVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPL---PITQWQ 64

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +E L++ +V    H    +  V    F  ++     I T VLA  +G   +       
Sbjct: 65  PFRELLQDLNVVKYLHAGSEDLEVFLNAF--ELMPTPMIDTQVLAAFSGRSLS------- 115

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                     G  ++    +G   +    R     R       +Y   DV     +  +L
Sbjct: 116 ---------CGFAMLVNEFEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLATKL 166

Query: 176 EPLSS----KEQELWYLDQTINDRGYCVDVALAHTLN 208
              +      +      +     R   +D  LA+   
Sbjct: 167 VEATEAAGRMDAAKDECELLCRRRSETLDPELAYREI 203


>gi|328770579|gb|EGF80620.1| hypothetical protein BATDEDRAFT_10944 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 637

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 15/127 (11%)

Query: 187 YLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLE 246
            LD          D             +R K +++ + L     S+     ++ T +  +
Sbjct: 381 KLDVLKEQEEMIADE--LEQEAAQAASKRAKEEEQSQRLKEEQESALTSATQIITEVKPK 438

Query: 247 T-GLHLEDLTE-----------TTCQRVLSSNKKLTPQAIQ-VFNNRMRASRSAVLKLNT 293
             G  L+ L E           +  + VL   K+   +  + +   R    +++    + 
Sbjct: 439 ISGKELKKLGEALKTMTAGSAFSDVKTVLEDLKEDQKEYKEDIEEYRQVTQKTSSKTADR 498

Query: 294 LVEAMNS 300
           L   ++ 
Sbjct: 499 LSSRVDK 505


>gi|319948476|ref|ZP_08022610.1| 3'-5' exonuclease [Dietzia cinnamea P4]
 gi|319437843|gb|EFV92829.1| 3'-5' exonuclease [Dietzia cinnamea P4]
          Length = 412

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 51/183 (27%), Gaps = 28/183 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D+ +    +Y+E   ++         P  L D          L   L  +   ++ H +
Sbjct: 45  VDVERASGIRYSERAFLL--QLRVPGEPALLVDPETPGRTVGPLATVL--SQRPLLFHAA 100

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAV-GEALKLSSQKMEEGKELIA 131
             +   L+    L I     + T +  R  G+    L A+  E L +   K     +   
Sbjct: 101 SQDLPSLRE---LGIRPTALVDTELAGRFLGIERVNLGAMISEHLGIGLAKAHSAADWSR 157

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
           R                        + +Y   DV    E+   + P         + +  
Sbjct: 158 RPLP-------------------AAWLDYAAYDVLFLHELADEVLPRLDALGRREWFEAE 198

Query: 192 IND 194
              
Sbjct: 199 CRH 201


>gi|301167883|emb|CBW27468.1| DNA polymerase II [Bacteriovorax marinus SJ]
          Length = 773

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAED----VCVILFA--FGFDDHPVELWDCVHDPVMPQ 55
             L +D ET    DL   G+    ED      V + A  +   +  +  +    +  +  
Sbjct: 150 NILSLDIETSFGNDLYSIGVHYQFEDHREFKKVFMVANEYKEVNEELTYYP--SEKEVLL 207

Query: 56  VLKE-ALE-NTDVTIVAHNSYFERTVLKA 82
             K+  L+ + D+ I  H   F+   L+ 
Sbjct: 208 AFKDNILQKDPDILIGWHVIGFDLDFLQR 236


>gi|291280885|ref|YP_003497703.1| DNA polymerase II [Escherichia coli O55:H7 str. CB9615]
 gi|209746840|gb|ACI71727.1| DNA polymerase II [Escherichia coli]
 gi|290760758|gb|ADD54719.1| DNA polymerase II [Escherichia coli O55:H7 str. CB9615]
 gi|320663496|gb|EFX30780.1| DNA polymerase II [Escherichia coli O55:H7 str. USDA 5905]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|183601395|ref|ZP_02962765.1| hypothetical protein BIFLAC_02027 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191105|ref|YP_002968499.1| hypothetical protein Balac_1081 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196511|ref|YP_002970066.1| hypothetical protein Balat_1081 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219001|gb|EDT89642.1| hypothetical protein BIFLAC_02027 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249497|gb|ACS46437.1| hypothetical protein Balac_1081 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251065|gb|ACS48004.1| hypothetical protein Balat_1081 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794094|gb|ADG33629.1| hypothetical protein BalV_1041 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 433

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 52/182 (28%), Gaps = 31/182 (17%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQV--LKEALENTDVTIVAH 71
           D  +    +Y  +    L  F  D  P+ L D    D          EA+ + +   + H
Sbjct: 45  DAERASGYRYGHED--WLIQFKRDGAPIALLDPIALDEQGVDWNAFNEAVGDAE--WILH 100

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           +S  +         + +   R   T + A+  GL      VG A             L  
Sbjct: 101 DSRQDLPGFAQ---IGLKPRRLFDTEIAAKLLGLHR----VGLAY-------VTAHFLGI 146

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV----TVTREIFKRLEPLSSKEQELWY 187
              K  +      R  P      R +  Y   DV     + R +   L+     E     
Sbjct: 147 TLAKEHSAADWSYRPLP------RDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEE 200

Query: 188 LD 189
            D
Sbjct: 201 FD 202


>gi|168801485|ref|ZP_02826492.1| DNA polymerase II [Escherichia coli O157:H7 str. EC508]
 gi|189376366|gb|EDU94782.1| DNA polymerase II [Escherichia coli O157:H7 str. EC508]
 gi|209746838|gb|ACI71726.1| DNA polymerase II [Escherichia coli]
 gi|326345221|gb|EGD68964.1| DNA polymerase II [Escherichia coli O157:H7 str. 1125]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|56477410|ref|YP_158999.1| nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) [Aromatoleum aromaticum EbN1]
 gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) [Aromatoleum aromaticum EbN1]
          Length = 469

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 38/141 (26%), Gaps = 35/141 (24%)

Query: 6   IDFETRSPIDLTKCGICKY---AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA-- 60
           ID ET     ++           E   ++            +      P + Q L     
Sbjct: 10  IDVETTGANPVSDRVTEIAVLRIERGEIVG------RWESLVNPERPIPALIQRLVGITD 63

Query: 61  -----------LENT------DVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
                      L ++          VAHN+ F+   ++               +CT+ L+
Sbjct: 64  EMVAGAPTFAELADSVRGHLDGAVFVAHNARFDYGFIRNEFSRLGQQFE-ASVLCTVKLS 122

Query: 101 RSNGLP---SALKAVGEALKL 118
           R+         L A+ E    
Sbjct: 123 RALYPEHHRHGLDALIERHGF 143


>gi|329667640|gb|AEB93588.1| DNA-directed DNA polymerase III [Lactobacillus johnsonii DPC 6026]
          Length = 177

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI-----LF--AFGFDDHPVELW-----DC 47
           M    +DFET +    + C +      +  ++     +      FD   + +      D 
Sbjct: 1   MNFTAMDFETANSHPESACSLALVMVRNNEIVDRFYTVINPQMPFDGRNIRIHGITAEDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHN+ F+  V++     +N+  P +  I TL  +++
Sbjct: 61  KNAPTMAEVWPKIKKLYQPGMLVAAHNARFDCRVMEKSLARYNIPAPHYFAIDTLATSKA 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V EAL ++
Sbjct: 121 FEPYLPNHKLDTVSEALNIN 140


>gi|325300436|ref|YP_004260353.1| DNA polymerase III, alpha subunit [Bacteroides salanitronis DSM
           18170]
 gi|324319989|gb|ADY37880.1| DNA polymerase III, alpha subunit [Bacteroides salanitronis DSM
           18170]
          Length = 1265

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 7/92 (7%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  +++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPIMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGKKNGHDPKTLEKIWADWEKFASYA 854


>gi|307256641|ref|ZP_07538420.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306864689|gb|EFM96593.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 371

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 63/243 (25%), Gaps = 61/243 (25%)

Query: 4   LFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           + +D E   TRS     K G+ +             FD   V L D  +           
Sbjct: 29  VALDTEFIRTRSYYP--KLGLIQL------------FDGDTVSLID-PNPISDFSPFIGL 73

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEALK 117
           L   +V  V H    +  V +  F           T ++A   G   +L   K V   L 
Sbjct: 74  LTCQNVVKVLHACSEDLEVFQHLF--KQLPTPLADTQIMAGFAGGGISLGFAKLVAHYLN 131

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K     + +AR                          +Y   DV     +++RL  
Sbjct: 132 VELDKGASRTDWLARPLT-------------------EEQLQYAAADVWYLLPVYQRLVS 172

Query: 178 LSSKEQELWYLDQTIND-------------------RGYCVDVALAHTLNQIVDVERTKL 218
                +    ++Q                         + ++      L  +      + 
Sbjct: 173 DLDATRWQNAVEQECRYLLSKRESVANIAQAYKDISNAWRLEPQQLAILKVLAKWRIEEA 232

Query: 219 DQE 221
           ++ 
Sbjct: 233 EKR 235


>gi|300923163|ref|ZP_07139221.1| DNA polymerase II [Escherichia coli MS 182-1]
 gi|301330171|ref|ZP_07222833.1| DNA polymerase II [Escherichia coli MS 78-1]
 gi|300420556|gb|EFK03867.1| DNA polymerase II [Escherichia coli MS 182-1]
 gi|300843811|gb|EFK71571.1| DNA polymerase II [Escherichia coli MS 78-1]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|294677027|ref|YP_003577642.1| ribonuclease D [Rhodobacter capsulatus SB 1003]
 gi|294475847|gb|ADE85235.1| ribonuclease D-2 [Rhodobacter capsulatus SB 1003]
          Length = 384

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 51/207 (24%), Gaps = 43/207 (20%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHDPVMPQ 55
            + +D E     T                   + L             L D + + +  +
Sbjct: 22  YVTVDTEFLRERTYWS---------------KLCLVQMALPGKEGEAVLVDPLVEGLSLE 66

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
            L +   +     V H +  +  +      +         T V A   G        GE 
Sbjct: 67  PLYDLFRHQATVKVFHAARQDLEIFFTEAGVF--PLPLFDTQVAAMVCGF-------GEQ 117

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           +          + L+ +  K    +     +             Y   DVT  R I++ L
Sbjct: 118 VGY--------ETLVKKIAKQSLDKTSRFTDWSRRPLTDAQ-KAYALADVTHLRVIYEFL 168

Query: 176 EPLSSKEQELWYLDQTINDRGYCVDVA 202
                K     ++     +    ++  
Sbjct: 169 SKELRKSGREKWV---EEEEAILLNPE 192


>gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1443

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN--GLP 106
                + E + ++   +VAHN+ F+   L A          ++  I TL LARS      
Sbjct: 463 ECVDEILEFIGDS--ILVAHNASFDYGFLNAELERIGRKPLMNPVIDTLDLARSMMDRKG 520

Query: 107 SALKAVGEALKLSSQKM 123
             L  +     +   + 
Sbjct: 521 YRLGNLARQYGIRYDED 537


>gi|224824622|ref|ZP_03697729.1| 3'-5' exonuclease [Lutiella nitroferrum 2002]
 gi|224603115|gb|EEG09291.1| 3'-5' exonuclease [Lutiella nitroferrum 2002]
          Length = 222

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 44/172 (25%), Gaps = 25/172 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D E          G  + +    ++  A         L+       +   L+  L
Sbjct: 68  RVLGFDTE---SRPTFHKG--ETSSGPHLVQLATAT---HAYLFPVERLADLT-RLRMIL 118

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+  +  V      +   L+A   ++      +    + R    P   + VG        
Sbjct: 119 ESPAIRKVGFELGSDVQRLRAKLGIE--CAALVD---IGRLFRQPGEHRTVGAV------ 167

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
             +    L  +  +    +   +               Y   D  V  +++ 
Sbjct: 168 --QAVARLFGQCFRKSKRQSTSNWA---SPVLSEAQCVYAGNDAYVALQVYH 214


>gi|213648384|ref|ZP_03378437.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
          Length = 371

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 122 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 165

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 166 TEAAGWLPAALDECRLMQQR 185


>gi|188493306|ref|ZP_03000576.1| DNA polymerase II [Escherichia coli 53638]
 gi|188488505|gb|EDU63608.1| DNA polymerase II [Escherichia coli 53638]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQSKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|327314343|ref|YP_004329780.1| DNA polymerase III subunit alpha [Prevotella denticola F0289]
 gi|326944718|gb|AEA20603.1| DNA polymerase III, alpha subunit [Prevotella denticola F0289]
          Length = 1239

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/115 (8%), Positives = 34/115 (29%), Gaps = 14/115 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLP 106
             +P  +K    +  +        ++   ++      + + +   +    ++L+R     
Sbjct: 720 DYIPDFIKRK-NDPSLVK------YDIPCMEKYLKDTYGITVYQEQV---MLLSRQLANF 769

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           +  ++      +  +K     ++  +F K         +        W  F  Y 
Sbjct: 770 TRGESDALRKAMGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYA 824


>gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 314

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 16/95 (16%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--- 86
           D  PV +     D          +       LE     +VAHN+ F+  ++   +     
Sbjct: 53  DPGPVWIHGLTSDVLEGAPLFKDVAAEFAARLE--GRVLVAHNAVFDWQMIAREYARARG 110

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           + P+ + +CT+ L++   LP     L+++     +
Sbjct: 111 EAPVRQRLCTIALSKELKLPLPNHKLESLAAHFGV 145


>gi|251789601|ref|YP_003004322.1| ribonuclease D [Dickeya zeae Ech1591]
 gi|247538222|gb|ACT06843.1| ribonuclease D [Dickeya zeae Ech1591]
          Length = 373

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 40/168 (23%), Gaps = 40/168 (23%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L      D+   +         P   
Sbjct: 24  EVALDTEFVRTRTYY---------------PQLGLIQLYDGDNLSLIDPLAIRDWAP--F 66

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           +  L+N  +T   H    +  V    F        +I + +LA   G P +         
Sbjct: 67  RALLQNPQITKFLHAGSEDLEVFLNAFG--CLPSPFIDSQILAAFLGKPLSYGFAALVAD 124

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
                +++ +       +  +                    +Y   DV
Sbjct: 125 YRQVALDKSESRTDWLARPLS----------------EKQCQYAAADV 156


>gi|228926672|ref|ZP_04089741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228833048|gb|EEM78616.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 934

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      E+              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|226227968|ref|YP_002762074.1| exonuclease [Gemmatimonas aurantiaca T-27]
 gi|226091159|dbj|BAH39604.1| exonuclease [Gemmatimonas aurantiaca T-27]
          Length = 323

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 20/104 (19%)

Query: 1   MATLFIDFETRSPID----LTKCGICKYAEDVCVILFAF----GFDDHPVELWDCVH--- 49
           M  L +D ET         + + G   +  D    ++       + + P           
Sbjct: 47  MRGLVVDVETTGLDTARDVIIEFGAVPFDFDGEGRVYTVHPPLSYFEDPGRPIPAEASAI 106

Query: 50  ---------DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
                       +      A  +  V ++AHN+ F+R +L+   
Sbjct: 107 TGITDDDVRGKRIDDAAVLAALDQAVLVIAHNAGFDRRMLERRL 150


>gi|170033361|ref|XP_001844546.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167874284|gb|EDS37667.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 342

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 24/163 (14%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
           AE+  ++  A       + ++D +    + + LK  L N  +  V HN      VLK  F
Sbjct: 152 AENPSLLSIA---TPDRIFIFDIM-WMSVTKDLKAILANPRIRRVIHNGRLAEDVLKHRF 207

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE-LIARFCKGETHECLY 143
               P+ R   TLV             +        Q     ++ L             +
Sbjct: 208 G--APLGRCFDTLVAH-----------IATTKNYDYQSEISVEKCLAKYLNLPGN---FF 251

Query: 144 DRNKPNHREAW-RLFGEYCKGDV--TVTREIFKRLEPLSSKEQ 183
           D N             +    +V   +T + +   E +     
Sbjct: 252 DPNITFADRPLTEPQRKAAAKNVAFLLTLQDYFVHEVMLEPFY 294


>gi|58617240|ref|YP_196439.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Gardel]
 gi|58416852|emb|CAI27965.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Gardel]
          Length = 242

 Score = 40.5 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 32/149 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-------------------P 41
           +  + +D ET     L   G  +  E  C+ L    F                       
Sbjct: 7   IREIVLDTETTG---LDADGGDRIIEMGCIELIDRVFTGKVFHEYINPERDIPYYATKIH 63

Query: 42  VELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIPIH-----RWI 94
               D + D      + +   +   +  +V HN+ F+   +K   +  I        + +
Sbjct: 64  GITVDMLKDKPKFSEIADKFLDFIGNSVLVIHNAVFDIKFIKMELD-KIQKSYNSDFQVV 122

Query: 95  CTLVLARSNGLPSA--LKAVGEALKLSSQ 121
            TL+LAR      +  L A+ +   +S Q
Sbjct: 123 DTLILARKKFPGVSSTLDALCKRFNISLQ 151


>gi|300117431|ref|ZP_07055221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus SJ1]
 gi|298725266|gb|EFI65918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus SJ1]
          Length = 934

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      E+              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|293408153|ref|ZP_06651993.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291472404|gb|EFF14886.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFATHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|74316845|ref|YP_314585.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
           25259]
 gi|74056340|gb|AAZ96780.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 470

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
           D      +   L E L       +AHN+ F+   LK               +CT+ L+R 
Sbjct: 70  DAPTFARVADELAERL--DGRLFIAHNARFDYGFLKHEYQRLGRRFR-ADVLCTVRLSRR 126

Query: 103 NGLP---SALKAVGEALKLSSQKM 123
                    L ++     L+++  
Sbjct: 127 LFPEHYRHNLDSLIARHGLATEGD 150


>gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16]
 gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16]
          Length = 1430

 Score = 40.5 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 22/139 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCVILF--AFGFDDHP--VELWDCV------- 48
            +  D ET     +    I   A   ++  +I    +F     P    + +         
Sbjct: 416 YVVFDVETTGLSAVYNTIIELAAVKIKNGEIIDTYESFADPKEPLSATIIELTGITDDMV 475

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
                P  + +       + T+VAHN+ F+   L             +  I TL L R  
Sbjct: 476 QGAPEPAEVLKQFREFAGNATLVAHNASFDIGFLNVGYKKLGFSEVTNPVIDTLELGRFL 535

Query: 104 GL---PSALKAVGEALKLS 119
                   L  + +   + 
Sbjct: 536 YPELKNHRLNTLCKKFDIE 554


>gi|330889978|gb|EGH22639.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 259

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 38/152 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            ++ +D ET     +      +  E  CV L           ++                
Sbjct: 9   RSIVLDTETTG---MPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHG 65

Query: 52  -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-------DIPIH 91
                         +     E +      ++ HN+ F+   +   F L       DI +H
Sbjct: 66  ITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITLH 123

Query: 92  -RWICTLVLARSNGLPS--ALKAVGEALKLSS 120
              + TL++AR        +L A+ +   + +
Sbjct: 124 CSILDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|324112539|gb|EGC06516.1| DNA polymerase B protein [Escherichia fergusonii B253]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|209746834|gb|ACI71724.1| DNA polymerase II [Escherichia coli]
 gi|320647464|gb|EFX16259.1| DNA polymerase II [Escherichia coli O157:H- str. 493-89]
 gi|320652798|gb|EFX21036.1| DNA polymerase II [Escherichia coli O157:H- str. H 2687]
 gi|320658187|gb|EFX25916.1| DNA polymerase II [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|15799744|ref|NP_285756.1| DNA polymerase II [Escherichia coli O157:H7 EDL933]
 gi|15829318|ref|NP_308091.1| DNA polymerase II [Escherichia coli O157:H7 str. Sakai]
 gi|168751431|ref|ZP_02776453.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4113]
 gi|168755666|ref|ZP_02780673.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4401]
 gi|168764063|ref|ZP_02789070.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4501]
 gi|168771282|ref|ZP_02796289.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4486]
 gi|168776902|ref|ZP_02801909.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4196]
 gi|168781943|ref|ZP_02806950.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4076]
 gi|168789585|ref|ZP_02814592.1| DNA polymerase II [Escherichia coli O157:H7 str. EC869]
 gi|195939276|ref|ZP_03084658.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4024]
 gi|208808136|ref|ZP_03250473.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4206]
 gi|208813114|ref|ZP_03254443.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4045]
 gi|208818657|ref|ZP_03258977.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4042]
 gi|209398156|ref|YP_002268668.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4115]
 gi|217325683|ref|ZP_03441767.1| DNA polymerase II [Escherichia coli O157:H7 str. TW14588]
 gi|254791198|ref|YP_003076035.1| DNA polymerase II [Escherichia coli O157:H7 str. TW14359]
 gi|261226819|ref|ZP_05941100.1| DNA polymerase II [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255222|ref|ZP_05947755.1| DNA polymerase II [Escherichia coli O157:H7 str. FRIK966]
 gi|12512757|gb|AAG54364.1|AE005183_1 DNA polymerase II [Escherichia coli O157:H7 str. EDL933]
 gi|13359520|dbj|BAB33487.1| DNA polymerase II [Escherichia coli O157:H7 str. Sakai]
 gi|187767760|gb|EDU31604.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4196]
 gi|188014542|gb|EDU52664.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4113]
 gi|189000401|gb|EDU69387.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4076]
 gi|189357004|gb|EDU75423.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4401]
 gi|189359882|gb|EDU78301.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4486]
 gi|189365884|gb|EDU84300.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4501]
 gi|189370820|gb|EDU89236.1| DNA polymerase II [Escherichia coli O157:H7 str. EC869]
 gi|208727937|gb|EDZ77538.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4206]
 gi|208734391|gb|EDZ83078.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4045]
 gi|208738780|gb|EDZ86462.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4042]
 gi|209159556|gb|ACI36989.1| DNA polymerase II [Escherichia coli O157:H7 str. EC4115]
 gi|209746836|gb|ACI71725.1| DNA polymerase II [Escherichia coli]
 gi|209746842|gb|ACI71728.1| DNA polymerase II [Escherichia coli]
 gi|217321904|gb|EEC30328.1| DNA polymerase II [Escherichia coli O157:H7 str. TW14588]
 gi|254590598|gb|ACT69959.1| DNA polymerase II [Escherichia coli O157:H7 str. TW14359]
 gi|320190418|gb|EFW65068.1| DNA polymerase II [Escherichia coli O157:H7 str. EC1212]
 gi|320642101|gb|EFX11452.1| DNA polymerase II [Escherichia coli O157:H7 str. G5101]
 gi|326346926|gb|EGD70660.1| DNA polymerase II [Escherichia coli O157:H7 str. 1044]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 1398

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 25/143 (17%)

Query: 2   ATLFIDFETRS---PIDLTKCGICKYAEDVCVI-LFAFGFDDHPVE-------------- 43
             +  D ET       D          E+  ++  F+   +                   
Sbjct: 381 KYIVFDLETTGFSNRNDAITEIGAIKVENGEIVEEFSQLINPERPIPEKIQKLTGITNEM 440

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWI--CTLVLAR 101
           + D      +     +  +++   +VAHNS F+   ++   + +   + +    T++L+R
Sbjct: 441 VIDKPTISEVLPKFLDFCKDS--ILVAHNSDFDTGFVREKASENNLPYDFDAIDTVILSR 498

Query: 102 SNGL---PSALKAVGEALKLSSQ 121
                     L  + + L +S +
Sbjct: 499 LLMPDLKNHKLNTIAKELNVSLE 521


>gi|228945241|ref|ZP_04107597.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814476|gb|EEM60741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 934

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      E+              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|205352416|ref|YP_002226217.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856601|ref|YP_002243252.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205272197|emb|CAR37055.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206708404|emb|CAR32708.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326627468|gb|EGE33811.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 232

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDR----PITPQAMAIHRITEAMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MSLY 118


>gi|196039095|ref|ZP_03106402.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus NVH0597-99]
 gi|196030240|gb|EDX68840.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus NVH0597-99]
          Length = 934

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      E+              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|118477094|ref|YP_894245.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis str. Al Hakam]
 gi|196046614|ref|ZP_03113838.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB108]
 gi|225863505|ref|YP_002748883.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB102]
 gi|229183836|ref|ZP_04311053.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
           6E1]
 gi|118416319|gb|ABK84738.1| ATP-dependent DNA helicase [Bacillus thuringiensis str. Al Hakam]
 gi|196022547|gb|EDX61230.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB108]
 gi|225789838|gb|ACO30055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus 03BB102]
 gi|228599685|gb|EEK57288.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
           6E1]
          Length = 934

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      E+              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|30261638|ref|NP_844015.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Ames]
 gi|47526838|ref|YP_018187.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184469|ref|YP_027721.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Sterne]
 gi|165869397|ref|ZP_02214056.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0488]
 gi|167639095|ref|ZP_02397368.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0193]
 gi|170706543|ref|ZP_02897003.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0389]
 gi|177650486|ref|ZP_02933453.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0174]
 gi|190568647|ref|ZP_03021552.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227815611|ref|YP_002815620.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. CDC 684]
 gi|229602233|ref|YP_002866045.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0248]
 gi|254734478|ref|ZP_05192190.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755128|ref|ZP_05207162.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Vollum]
 gi|254759665|ref|ZP_05211689.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus anthracis str. Australia 94]
 gi|30255866|gb|AAP25501.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. Ames]
 gi|47501986|gb|AAT30662.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178396|gb|AAT53772.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           anthracis str. Sterne]
 gi|164714837|gb|EDR20355.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0488]
 gi|167512885|gb|EDR88258.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0193]
 gi|170128641|gb|EDS97508.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0389]
 gi|172083630|gb|EDT68690.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0174]
 gi|190560247|gb|EDV14227.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227006832|gb|ACP16575.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. CDC 684]
 gi|229266641|gb|ACQ48278.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           anthracis str. A0248]
          Length = 934

 Score = 40.5 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      E+              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|307706367|ref|ZP_07643179.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK321]
 gi|307618285|gb|EFN97440.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
           SK321]
          Length = 816

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 78/296 (26%), Gaps = 57/296 (19%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLVQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK----RLEPLSSKEQELWYLDQTINDRG 196
               +              Y      V  EI++       P   + Q L++         
Sbjct: 170 AQLPKGLLERLLEMADALLY--ESYLVIEEIYRSQSILSSPDLVEVQGLYFKKTGAPLEP 227

Query: 197 YCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE 252
             +    +  ++ +    R + +     +   L      L +  T +    G  L 
Sbjct: 228 RKLSQDFSKNISLLNLEVREEQESFAREVGLLLKDEPVSLIQAPTGIGKTYGYLLP 283


>gi|291084892|ref|YP_003495175.1| gp34 [Mycobacterium phage Ardmore]
 gi|262262728|gb|ACY39916.1| gp34 [Mycobacterium phage Ardmore]
          Length = 273

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 56/190 (29%), Gaps = 44/190 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTI 68
           ET + +  T     K+  D  VI  A          WD        + +   L   D+ +
Sbjct: 50  ETVTRMPRTTIVCAKWYHDAEVIQLA---------EWDSGGRRRFLRRVHNLLSQADI-V 99

Query: 69  VAHNSYF----ERTVLKACFNLD-----IPIHRWICTLVLARSNG-------LPSALKAV 112
           V H   +    +   LK   +++     +P  + + TL   +              L A 
Sbjct: 100 VGH---YIDEADVPWLKGDLHIEAGLPPLPPFKTVDTL---KVLRREFKSGAPFKGLDAF 153

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            + + LS++          RF                          YC GDV  T+ ++
Sbjct: 154 CQIVGLSAKTDRY-----DRFAMERAVTEK-------SAVDRERLIAYCAGDVIATQGLY 201

Query: 173 KRLEPLSSKE 182
             L P     
Sbjct: 202 DFLRPHIKNH 211


>gi|213865181|ref|ZP_03387300.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 200

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 10  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 52

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 53  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFASMVEEY 110

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 111 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 154

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 155 TEAAGWLPAALDECRLMQQR 174


>gi|33597590|ref|NP_885233.1| hypothetical protein BPP3054 [Bordetella parapertussis 12822]
 gi|33574018|emb|CAE38341.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 259

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 16/160 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLK-ACFNLDIPIHRWICTL------ 97
               +  +     + +E     +V+ N   F+  VL        +P  R+  T       
Sbjct: 78  PDDPEAALLSGFFKTIERYTPRLVSWNGSGFDLPVLHYRSLIHGVPAPRYWDTGDEDRDF 137

Query: 98  ----VLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                ++R +     L   + +    ++  ++E  +L     K           +  ++ 
Sbjct: 138 KFNNYISRYHNRHIDLMDLLAKYNGRANAPLDELAKLCGFPGKLGMDGSKV--WEAWNQG 195

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                  YC+ DV  T  ++ R       E +    D  I
Sbjct: 196 KADEVRAYCETDVVNTWLVYCRFR-FLRGELDRVAYDAEI 234


>gi|86146863|ref|ZP_01065182.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
 gi|85835315|gb|EAQ53454.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
          Length = 255

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/168 (10%), Positives = 41/168 (24%), Gaps = 44/168 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF---------------------GFDDH 40
             + +D ET     +   G   Y     ++                            + 
Sbjct: 22  RIVVLDTETTG---MNTEGGPHYMGH-RIVEIGAVEIINRRLTGRHFHVYIKPDRAIQEE 77

Query: 41  PV--------ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------N 85
            +         L D      + +   + +      +VAHN+ F+   +   F        
Sbjct: 78  AIGVHGITDEFLIDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLNPAIG 135

Query: 86  LDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                 +   TL +A+         L  + +   + +        L+ 
Sbjct: 136 KTDDYCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLD 183


>gi|65318908|ref|ZP_00391867.1| COG1199: Rad3-related DNA helicases [Bacillus anthracis str. A2012]
          Length = 934

 Score = 40.5 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      E+              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEEXRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|325956410|ref|YP_004291822.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325332975|gb|ADZ06883.1| DNA polymerase III alpha chain [Lactobacillus acidophilus 30SC]
 gi|327183226|gb|AEA31673.1| DNA polymerase III subunit alpha [Lactobacillus amylovorus GRL
           1118]
          Length = 177

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------LFAFGFDDHPVELW---DC 47
           M  + +DFET +    + C +      +  ++            F   +  V      D 
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNTEIVDRFYTVINPQMPFDARNIQVHQITAEDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHN+ F+  V++     +N+  P +  I TL  ++ 
Sbjct: 61  KNAPTMAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNISEPHYLVIDTLATSKK 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V +AL + 
Sbjct: 121 FEPELPNHKLDTVSDALDVE 140


>gi|300932462|ref|ZP_07147718.1| hypothetical protein CresD4_00200 [Corynebacterium resistens DSM
           45100]
          Length = 429

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 42/192 (21%), Gaps = 33/192 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E              Y  D    L     +     + D    P   +  ++AL  
Sbjct: 22  IAIDTE----------RAAMYRFDDRAYLIQLRREGAGTFIVDPTGHPAKLREWQDALLA 71

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
                + H ++ +   L     L       + T + AR  G                   
Sbjct: 72  ET-PWLLHAAHTDLPAL---LALGWQPSVLLDTQIAARLLGCHR---------------- 111

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKE 182
                 +               N    +         Y   DV     +   +    ++ 
Sbjct: 112 --LGLSLLLEEFLSISIPKDKGNADWSQRPLPNSMLAYAALDVEYLVPMHDMMIKELAEL 169

Query: 183 QELWYLDQTIND 194
             L +  Q    
Sbjct: 170 NRLDWYRQECEH 181


>gi|116494505|ref|YP_806239.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|227535524|ref|ZP_03965573.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239631264|ref|ZP_04674295.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|116104655|gb|ABJ69797.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus casei ATCC 334]
 gi|227186846|gb|EEI66913.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239525729|gb|EEQ64730.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 180

 Score = 40.5 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAEDVCVIL---FAFGFDDHPVELW--DCV 48
           M  + +DFET          + L      K  +    ++     F   +  +     + V
Sbjct: 1   MDFIAMDFETANRKRASACSLALVVVQQNKVVDSFYTLINPQMQFDAQNIHIHGITPEMV 60

Query: 49  HDPVMPQVLKEALE---NTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            D      +   ++        + AHN+ F+ +V++     + +  P ++ I T+  +R 
Sbjct: 61  QDQPTFDQVWPHIQMFYTPGRIVTAHNAPFDVSVMRLTLDRYGIAAPRYQVIDTVKTSRQ 120

Query: 103 N---GLPSALKAVGEALKLS 119
                    L  V  AL + 
Sbjct: 121 FLPKLPNHRLDTVSAALHIP 140


>gi|325578461|ref|ZP_08148596.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
 gi|325160197|gb|EGC72326.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
          Length = 383

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 55/198 (27%), Gaps = 48/198 (24%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    +D   V L D +          
Sbjct: 33  VALDTEFMRISTYY---------------PKLGLIQL-YDGERVSLIDPLSITDF-SPFV 75

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE---- 114
           E L +  VT + H    +  V    F  D      + T ++AR  G  ++   + +    
Sbjct: 76  ELLRDQQVTKILHACNEDLLVFLQEF--DALPQLMMDTQIMARFLGFANS-AGLAKLVLH 132

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +   K       + R                          +Y  GDV     ++++
Sbjct: 133 YLGIEMDKGATRTNWLKRPLSPVQ-------------------LQYAAGDVWYLLPVYQK 173

Query: 175 LEPLSSKEQELWYLDQTI 192
           ++   ++   L  +    
Sbjct: 174 MQIELAQSPWLQAVIDDC 191


>gi|300928643|ref|ZP_07144162.1| DNA polymerase II [Escherichia coli MS 187-1]
 gi|300463312|gb|EFK26805.1| DNA polymerase II [Escherichia coli MS 187-1]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|283835122|ref|ZP_06354863.1| DNA polymerase II [Citrobacter youngae ATCC 29220]
 gi|291069422|gb|EFE07531.1| DNA polymerase II [Citrobacter youngae ATCC 29220]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 63/237 (26%), Gaps = 59/237 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV---ELWDCVHDPVMPQVLK 58
             + +D ET    +L   G+        V +      D      EL      P + + L 
Sbjct: 151 KWVSLDIETTRHGELYCIGLEG-CGQRIVYMLGPANGDASALDFELEYVASRPQLLEKLN 209

Query: 59  EALE--NTDVTIVAHN-SYFERTVLKACF-NLDIPIHRWIC------------------- 95
           + +   + DV  +  N   F+  VL+       IP+                        
Sbjct: 210 DWIARHDPDVI-IGWNVVQFDLRVLQKHAERYRIPLRFGRDNSELEWREHGFKNGVFFAQ 268

Query: 96  T----------LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
           T           + +        +L+ V + L      + EGK                D
Sbjct: 269 TKGRLIVDGIEALKSAFWNFSSFSLETVSQEL------LGEGKS----IDNPWDRMDEID 318

Query: 145 RNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDV 201
           R     + A      Y   D  +   IF + E +         L +     G  VD 
Sbjct: 319 RRFAQDKPALAT---YNLKDCELVTRIFHKTEIMPF-------LLERSTVNGLPVDR 365


>gi|254425359|ref|ZP_05039077.1| exonuclease family [Synechococcus sp. PCC 7335]
 gi|196192848|gb|EDX87812.1| exonuclease family [Synechococcus sp. PCC 7335]
          Length = 273

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI--PIHRWICTLV 98
           ++       +    +  LE  D    AHN  F+ + L+       +    P  + +CT++
Sbjct: 91  VYSSPPPEEIWPKCQPLLE-GDRVFTAHNLDFDYSFLRTEYKRLGIRFYKPPLQKLCTVI 149

Query: 99  LARSN---GLPSALKAVGEALKLSSQKMEEGKE 128
           L+R         +L  + +            + 
Sbjct: 150 LSRMLLADLPSRSLPNLIKHFNFDIDTSHRAEA 182


>gi|328698648|ref|XP_001946371.2| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
           [Acyrthosiphon pisum]
          Length = 522

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 19/161 (11%)

Query: 30  VILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIP 89
           V L     ++    L        +P  L + L N+++  V      +  +L   +N+++ 
Sbjct: 76  VALLQIADNNGMCSLIRLSKFKTIPSSLSDILSNSNIIKVGVAILDDAHLLMNDYNINV- 134

Query: 90  IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
               I              L+ + +   L  + +     L  +    E  +  + R    
Sbjct: 135 -SGCID-------------LRYLAKESCLEERSLS---ALAFKLLGCELDKDWHVRASDW 177

Query: 150 HREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
             E       EY   D  V  +IF++L           +L 
Sbjct: 178 EAEELNDRQTEYAALDAYVAVKIFEQLRNKKISWWNWLFLT 218


>gi|301156355|emb|CBW15826.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
          Length = 383

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 57/201 (28%), Gaps = 54/201 (26%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD---CVHDPVMPQ 55
           + +D E     T                   + L    +D   V L D           +
Sbjct: 33  VALDTEFMRVSTYY---------------PKLGLIQL-YDGERVSLIDPLSITDFSPFVE 76

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE- 114
           +L++ L    VT + H    +  V    F  D      + T ++AR  G  ++   + + 
Sbjct: 77  LLRDQL----VTKILHACNEDLLVFLQEF--DALPQPMMDTQIMARFLGFANS-AGLAKL 129

Query: 115 ---ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
               L +   K       + R                          +Y  GDV     +
Sbjct: 130 VLHYLGIEMDKGATRTNWLKRPLSPVQ-------------------LQYAAGDVWYLLPV 170

Query: 172 FKRLEPLSSKEQELWYLDQTI 192
           +++++   ++   L  +    
Sbjct: 171 YQKMQIELAQSPWLQAVIDDC 191


>gi|224283333|ref|ZP_03646655.1| Ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
 gi|313140484|ref|ZP_07802677.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
 gi|313132994|gb|EFR50611.1| ribonuclease D [Bifidobacterium bifidum NCIMB 41171]
          Length = 428

 Score = 40.5 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 22/131 (16%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D   + H+S  +        ++ +       T + AR  GL    L AV E         
Sbjct: 91  DAVWILHDSLQDLPGFA---DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHY------- 140

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L     K  +      R  P      R +  Y   DV +  E+ ++++     + 
Sbjct: 141 -----LGVTLAKEHSAADWSYRPLP------RDWRNYAALDVELLIELRRKMQRELKSQG 189

Query: 184 ELWYLDQTIND 194
           +  + D+    
Sbjct: 190 KDGWADEEFRY 200


>gi|319955723|ref|YP_004166990.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319424383|gb|ADV51492.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 456

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 54/196 (27%), Gaps = 45/196 (22%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPV--ELWDCVHDPVMPQVL----- 57
           +D ET            KY E+  +   A   FD H V  +    V+     Q       
Sbjct: 5   LDIETTG---------GKYNEEG-ITEIAIHKFDGHQVVDQFISLVNPEKEIQPFVVNLT 54

Query: 58  -----------------KEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
                            K  +E      ++AHN+ F+  +L+        +       CT
Sbjct: 55  GITNKMLVTAPKFYEVAKRIVEITEGTVLIAHNAQFDYRILRTEFRRLGFNFERKTI-CT 113

Query: 97  LVLARSNGL---PSALKAVGEALKLS--SQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
           + LA+         +L  +  +L +    +    G  L              D+      
Sbjct: 114 VELAQKLLPEAESYSLGKLVRSLGIPVSDRHRANGDALATLKLFKLLLSKDLDKTIVKSV 173

Query: 152 EAWRLFGEYCKGDVTV 167
                 GE     + +
Sbjct: 174 LKAETLGELSPRQLDI 189


>gi|300904709|ref|ZP_07122542.1| exonuclease [Escherichia coli MS 84-1]
 gi|301304416|ref|ZP_07210528.1| exonuclease [Escherichia coli MS 124-1]
 gi|300403376|gb|EFJ86914.1| exonuclease [Escherichia coli MS 84-1]
 gi|300840267|gb|EFK68027.1| exonuclease [Escherichia coli MS 124-1]
 gi|315257344|gb|EFU37312.1| exonuclease [Escherichia coli MS 85-1]
          Length = 220

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 12/64 (18%)

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|296117768|ref|ZP_06836352.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
 gi|295969499|gb|EFG82740.1| putative ribonuclease D [Corynebacterium ammoniagenes DSM 20306]
          Length = 411

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 44/173 (25%), Gaps = 41/173 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E  S           +  D    L      D P+ L        +   ++E L  
Sbjct: 36  IAIDTERASS----------FRYDDRAFLIQLRRADTPIFLV---APEGIRDDVREVLA- 81

Query: 64  TDV---TIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEA-LKL 118
             V     V H +  + T L     L +       T V  R  G     L +V E  L +
Sbjct: 82  PVVNGEKWVVHAAVTDLTSLAW---LGLYPGSLFDTEVAGRLLGIQNPNLASVTEEFLGI 138

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
              K                       +      +      Y   DV    E+
Sbjct: 139 ELDK------------------GYGATDWSRFPLSKAQLI-YAALDVDTLLEL 172


>gi|260775260|ref|ZP_05884157.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608441|gb|EEX34606.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 246

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 13/99 (13%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH--------RWI 94
            L D      + +   E +      +VAHN+ F+   +   FN+ +           +  
Sbjct: 77  FLVDKPEYQDVHKEFLEFI--KGAELVAHNAPFDTGFMDYEFNM-LDPGIGKTDDYCKVT 133

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL +A+         L  + +   + +        L+ 
Sbjct: 134 DTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLD 172


>gi|228996755|ref|ZP_04156392.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock3-17]
 gi|228763074|gb|EEM11984.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
           Rock3-17]
          Length = 930

 Score = 40.5 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 43/149 (28%), Gaps = 34/149 (22%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILF--AF---------------GFDD 39
             + +D ET         D          ED  ++    +F               G D+
Sbjct: 4   RYVVVDLETTGNSWKDGKDRITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 40  HPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWIC 95
           + V+      D   M   L +         +AHN +F+   LK               I 
Sbjct: 64  NLVKQAPLFCDVAPMVAELLQ-----GAYFIAHNVHFDWNFLKEELKQAGYGEVNCPKID 118

Query: 96  TLVLARSNGL---PSALKAVGEALKLSSQ 121
           T+ LA+          L+ + +  +L   
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKHELEHD 147


>gi|332535809|ref|ZP_08411542.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332034787|gb|EGI71325.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 237

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 13/95 (13%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFE-------RTVLKACFNLDIPIHRWICTLV 98
              H   + Q   + +E     +V HN+ F+         +L   +       + + TL 
Sbjct: 70  PLFH--QIAQEFFDYIE--GAELVIHNAPFDVGHMDNEFALLNQGYPKTETFCQVLDTLK 125

Query: 99  LARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           +AR         L A+     + + K      L+ 
Sbjct: 126 MARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLD 160


>gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
 gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
          Length = 1463

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 13/122 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL--FGEYCKGDV 165
                 +   L       G  L          E          +E        +  + +V
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEKHGVTDLARLNV 602

Query: 166 TV 167
            +
Sbjct: 603 DL 604


>gi|227813558|ref|YP_002813567.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. CDC 684]
 gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. CDC 684]
          Length = 315

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 68/254 (26%), Gaps = 31/254 (12%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++     P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
                +     L+ +   L +         + I      +    + +  +   +    + 
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASIEE--EAKRKSNTEVL 184

Query: 158 GEYCKGDVTVTREIFKRLE-PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERT 216
            E    +      +  + +           YLD         + V         +     
Sbjct: 185 DETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYV--LTDILE 242

Query: 217 KLDQELESLTYGLV 230
              +E+        
Sbjct: 243 DDVKEICRSLACEP 256


>gi|219683452|ref|YP_002469835.1| ribonuclease D [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621102|gb|ACL29259.1| putative ribonuclease D [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 430

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 52/182 (28%), Gaps = 31/182 (17%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWD-CVHDPVMPQV--LKEALENTDVTIVAH 71
           D  +    +Y  +    L  F  D  P+ L D    D          EA+ + +   + H
Sbjct: 42  DAERASGYRYGHED--WLIQFKRDGAPIALLDPIALDEQGVDWNAFNEAVGDAE--WILH 97

Query: 72  NSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIA 131
           +S  +         + +   R   T + A+  GL      VG A             L  
Sbjct: 98  DSRQDLPGFAQ---IGLKPRRLFDTEIAAKLLGLHR----VGLAY-------VTAHFLGI 143

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV----TVTREIFKRLEPLSSKEQELWY 187
              K  +      R  P      R +  Y   DV     + R +   L+     E     
Sbjct: 144 TLAKEHSAADWSYRPLP------RDWRNYAALDVELLSDLERAMTHELKRQGKWEWAQEE 197

Query: 188 LD 189
            D
Sbjct: 198 FD 199


>gi|188991267|ref|YP_001903277.1| hypothetical protein xccb100_1872 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733027|emb|CAP51225.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 362

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 49/204 (24%), Gaps = 40/204 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L      +  + +   +    M   LK
Sbjct: 22  IGLDTEFIRERTYW---------------PQLALVQMAIGEEILLIDPLIPG--MTDALK 64

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L   D+  V H++  +    K      +       T +                A   
Sbjct: 65  DWLVAPDIVKVMHSASEDLVTFKCACG--VLPRPLFDTQI---------------AAALA 107

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                   ++L+         +     +      +     EY   DV     I   L   
Sbjct: 108 GVGGGMGYQKLVQEVTGTLLTKGETRSDWMRRPLSPAQL-EYAADDVRYLFAIHDALTAK 166

Query: 179 SSKEQELWYLDQTINDRGYCVDVA 202
            + +  L +L +        V+  
Sbjct: 167 LTAQDRLGWLAEDGERLLGTVEHD 190


>gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
 gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1]
          Length = 237

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 39/149 (26%), Gaps = 32/149 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
           M  + +D ET       K G  +  E  CV +      +    ++      V  +  +  
Sbjct: 1   MRQVVLDTETTGIDP--KQG-HRIIEIGCVEMIGRKLTNRHFHVYINPDREVEEEAFRVH 57

Query: 59  ----EALEN---------------TDVTIVAHNSYFERTV----LKACFNLD--IPIHRW 93
               E L +                   ++ HN+ F+                   +   
Sbjct: 58  GISNEFLADKPRFHEIAQEFFDFIKGAELIIHNAPFDIGFMDHEFARIGGYPKTAEVCGV 117

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSS 120
             +LV AR         L  +     + +
Sbjct: 118 FDSLVYARKKHPGQKNNLDILCRRYGIDN 146


>gi|57239226|ref|YP_180362.1| DNA polymerase III, epsilon chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161305|emb|CAH58228.1| DNA polymerase III, epsilon subunit [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 242

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 32/149 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-------------------P 41
           +  + +D ET     L   G  +  E  C+ L    F                       
Sbjct: 7   IREIVLDTETTG---LDADGGDRIIEMGCIELIDRVFTGKVFHEYINPERDIPYYATKIH 63

Query: 42  VELWDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIPIH-----RWI 94
               D + D      + +   +   +  +V HN+ F+   +K   +  I        + +
Sbjct: 64  GITVDMLKDKPKFSEIADKFLDFIGNSVLVIHNAVFDIKFIKMELD-KIQKSYNSDFQVV 122

Query: 95  CTLVLARSNGLPSA--LKAVGEALKLSSQ 121
            TL+LAR      +  L A+ +   +S Q
Sbjct: 123 DTLILARKKFPGVSSTLDALCKRFNISLQ 151


>gi|86147639|ref|ZP_01065948.1| ribonuclease D [Vibrio sp. MED222]
 gi|85834550|gb|EAQ52699.1| ribonuclease D [Vibrio sp. MED222]
          Length = 397

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 27/145 (18%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           FD   + L D    D + P      L++T V  V H    +  V +  F         + 
Sbjct: 72  FDGETLSLIDPIALDEMTP--FVGLLKDTSVLKVLHACGEDLEVFQNAFG--CTPTPMVD 127

Query: 96  TLVLARSNGLPSALK---AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           T ++A   G   +      V E + +   K              E+      R     + 
Sbjct: 128 TQIMAAFLGHGLSTGFAALVSEFVGVDLDK-------------SESRTDWLARPLSQKQL 174

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEP 177
                  Y   DV     ++ ++  
Sbjct: 175 D------YAAADVHYLMPMYNKILE 193


>gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames]
 gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne]
 gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
           [Bacillus anthracis str. A2012]
 gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0488]
 gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0442]
 gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0193]
 gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0465]
 gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0389]
 gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0174]
 gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|229603113|ref|YP_002867802.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0248]
 gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
           CNEVA-9066]
 gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055]
 gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger
           B]
 gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum]
 gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
           Australia 94]
 gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. Ames]
 gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis
           str. Sterne]
 gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0488]
 gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0193]
 gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0442]
 gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0389]
 gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0465]
 gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0174]
 gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
           str. A0248]
          Length = 315

 Score = 40.5 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 26/161 (16%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++     P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                +     L+ +   L +         + I      + 
Sbjct: 127 KKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167


>gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
 gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
          Length = 565

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 25/139 (17%)

Query: 4   LFIDFETRSP--IDLTKCGICKYAEDVCVI-LFAFGFDDH--------------PVELWD 46
           + +D ET      D          +   ++  FA   +                   L  
Sbjct: 9   VVVDTETTGSGPADRIIELAAVRVQGGRIVERFATLINPGRSVPPFITRLTGITTAMLVG 68

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
                 +     + L +    +VAHN  F+R +L+       L  P +  +CTL LAR  
Sbjct: 69  RPSADEVLPDFLDFLGDG--VLVAHNLAFDRKMLEAELQRIGLAWPGNPALCTLRLARRL 126

Query: 104 GLPS---ALKAVGEALKLS 119
                   L  +    ++ 
Sbjct: 127 LPGLPAKGLDGLIRFYQIP 145


>gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC
           19977]
 gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium
           abscessus]
          Length = 327

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 45/150 (30%), Gaps = 25/150 (16%)

Query: 2   ATLFIDFETRSPIDLTK--CGICKYAEDVC-------VILFAFGFDDHPVELWDCVHD-- 50
             + +D ET            +   A D         V L   G D  P  +     +  
Sbjct: 13  KWVVVDLETSGFQPGRARVISVAALAMDADGTITDSVVSLLNPGVDPGPTHVHGLTPEML 72

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
                   +   L   L     T+VAHN  F+ + L A       ++P    +CT+ L R
Sbjct: 73  EGQPEFSDIAPDLIALLR--GRTLVAHNVGFDYSFLAAEAELVGAELPTEAVMCTVELTR 130

Query: 102 SNG---LPSALKAVGEALKLSSQKMEEGKE 128
                     L+ +     +   K  +  +
Sbjct: 131 RLELDTPNLRLETLAAHWGVEQLKAHDAYD 160


>gi|56413264|ref|YP_150339.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362190|ref|YP_002141827.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127521|gb|AAV77027.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093667|emb|CAR59137.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 371

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 122 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 165

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 166 TEAAGWLPAALDECRLMQQR 185


>gi|194439403|ref|ZP_03071480.1| DNA polymerase II [Escherichia coli 101-1]
 gi|238899463|ref|YP_002925259.1| DNA polymerase II [Escherichia coli BW2952]
 gi|253774910|ref|YP_003037741.1| DNA polymerase II [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160183|ref|YP_003043291.1| DNA polymerase II [Escherichia coli B str. REL606]
 gi|194421662|gb|EDX37672.1| DNA polymerase II [Escherichia coli 101-1]
 gi|238860828|gb|ACR62826.1| DNA polymerase II [Escherichia coli BW2952]
 gi|242375897|emb|CAQ30578.1| DNA polymerase II [Escherichia coli BL21(DE3)]
 gi|253325954|gb|ACT30556.1| DNA-directed DNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972084|gb|ACT37755.1| DNA polymerase II [Escherichia coli B str. REL606]
 gi|253976293|gb|ACT41963.1| DNA polymerase II [Escherichia coli BL21(DE3)]
 gi|323960007|gb|EGB55653.1| DNA polymerase B protein [Escherichia coli H489]
 gi|323970733|gb|EGB65987.1| DNA polymerase B protein [Escherichia coli TA007]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|238796317|ref|ZP_04639826.1| Ribonuclease D [Yersinia mollaretii ATCC 43969]
 gi|238719762|gb|EEQ11569.1| Ribonuclease D [Yersinia mollaretii ATCC 43969]
          Length = 395

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 67/243 (27%), Gaps = 48/243 (19%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV- 56
            + +D E     T                   + L    +D   + L D +    + +  
Sbjct: 46  HVALDTEFVRTRTYY---------------PQLGLIQL-YDGEQLSLIDPL---PITEWQ 86

Query: 57  -LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             +E L++ +V    H    +  V    F+        I T VLA  +G   +       
Sbjct: 87  PFRELLQDLNVVKYLHAGSEDLEVFLNAFDR--MPTPMIDTQVLAAFSGRSLS------- 137

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
                     G  ++    +G   +    R     R       +Y   DV     +  +L
Sbjct: 138 ---------CGFAMLVNEFEGVELDKSESRTDWIARPLSEKQCDYAAADVFYLLPLATKL 188

Query: 176 EPLSS----KEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
              +      +      +     R   +D  LA+         R +    L+ L    + 
Sbjct: 189 VEATEAAGRMDAAKDECELLCRRRSETLDPELAYREITNAWQLRGRQLACLQKLAAWRLR 248

Query: 232 SSR 234
            +R
Sbjct: 249 QAR 251


>gi|32035264|ref|ZP_00135282.1| COG0349: Ribonuclease D [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208098|ref|YP_001053323.1| ribonuclease D [Actinobacillus pleuropneumoniae L20]
 gi|190149931|ref|YP_001968456.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|307249819|ref|ZP_07531795.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307261076|ref|ZP_07542755.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|307263258|ref|ZP_07544876.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|126096890|gb|ABN73718.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|189915062|gb|ACE61314.1| ribonuclease D [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|306858121|gb|EFM90201.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306869208|gb|EFN01006.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306871320|gb|EFN03046.1| Ribonuclease D [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 371

 Score = 40.5 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 62/243 (25%), Gaps = 61/243 (25%)

Query: 4   LFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
           + +D E   TRS     K G+ +             FD   V L D              
Sbjct: 29  VALDTEFIRTRSYYP--KLGLIQL------------FDGDTVSLIDPNSISDF-SPFIGL 73

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL---KAVGEALK 117
           L   +V  V H    +  V +  F           T ++A   G   +L   K V   L 
Sbjct: 74  LTCQNVVKVLHACSEDLEVFQHLF--KQLPTPLADTQIMAGFAGGGISLGFAKLVAHYLN 131

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +   K     + +AR                          +Y   DV     +++RL  
Sbjct: 132 VELDKGASRTDWLARPLT-------------------EEQLQYAAADVWYLLPVYQRLVS 172

Query: 178 LSSKEQELWYLDQTIND-------------------RGYCVDVALAHTLNQIVDVERTKL 218
                +    ++Q                         + ++      L  +      + 
Sbjct: 173 DLDATRWQNAVEQECRYLLSKRESVANIAQAYKDISNAWRLEPQQLAILKVLAKWRIEEA 232

Query: 219 DQE 221
           ++ 
Sbjct: 233 EKR 235


>gi|300905462|ref|ZP_07123228.1| DNA polymerase II [Escherichia coli MS 84-1]
 gi|301305050|ref|ZP_07211151.1| DNA polymerase II [Escherichia coli MS 124-1]
 gi|300402678|gb|EFJ86216.1| DNA polymerase II [Escherichia coli MS 84-1]
 gi|300839657|gb|EFK67417.1| DNA polymerase II [Escherichia coli MS 124-1]
 gi|315255666|gb|EFU35634.1| DNA polymerase II [Escherichia coli MS 85-1]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|218547508|ref|YP_002381299.1| DNA polymerase II [Escherichia fergusonii ATCC 35469]
 gi|218355049|emb|CAQ87655.1| DNA polymerase II [Escherichia fergusonii ATCC 35469]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|194900862|ref|XP_001979974.1| GG21034 [Drosophila erecta]
 gi|190651677|gb|EDV48932.1| GG21034 [Drosophila erecta]
          Length = 900

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 47/159 (29%), Gaps = 20/159 (12%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH 91
           L           ++D +       +L   L +     + H +  +   L+   +L + I 
Sbjct: 311 LVQMSTRSKD-YIFDTLILREDMHILNLVLTDPKKLKILHGADLDIEWLQR--DLSLYIV 367

Query: 92  RWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
               T   A++      L  +  A             L+  +   +  + L   +     
Sbjct: 368 NMFDTHRAAKALN----LARLSLAY------------LLKYYLDLDVDKSLQLADWRMRP 411

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
              +   +Y + D      +++R+     ++Q    L  
Sbjct: 412 LP-QQLVDYARQDTHFLIYVYERMTNDLLQQQTDTGLLA 449


>gi|73661352|ref|YP_300133.1| hypothetical protein SSP0043 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493867|dbj|BAE17188.1| hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 366

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 591 YTYGGKLTENIVQAVSRDILAEGMMNATKAGY-----DIVLTVHDEIVCETPDTDEFNAS 645
              G  +    VQ V+  I    ++   KA        I+L +HD I+ E    DE  A 
Sbjct: 277 AFQGSSIMAFYVQTVASYIFKHILLEVYKAQCTQKSFQIILPIHDAIMIEC--DDEETAQ 334

Query: 646 MLYHLM 651
            +  LM
Sbjct: 335 SVAQLM 340


>gi|33862659|ref|NP_894219.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9313]
 gi|33634575|emb|CAE20561.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9313]
          Length = 309

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 24/138 (17%)

Query: 4   LFIDFETRSPIDLT----KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL-- 57
           L ID ET           + G   +      +L    F   PVE         +P  +  
Sbjct: 80  LIIDTETTGLDPKRGQCLEVGAILFHAPQRAVLAQHSFLL-PVETNAAESINRIPAEVTR 138

Query: 58  -----------KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL--VL---AR 101
                       +AL +    +VAHN+ F+R        L      W+CT+  +     R
Sbjct: 139 LDQPWRQGLDYFQALLDAADLLVAHNAGFDRQWFGKDQ-LPAVSKPWLCTMEDIAWPVDR 197

Query: 102 SNGLPSALKAVGEALKLS 119
                 +++ +  A  + 
Sbjct: 198 QLRSRPSVRDLALAYGVP 215


>gi|331681444|ref|ZP_08382081.1| DNA polymerase II (Pol II) [Escherichia coli H299]
 gi|331081665|gb|EGI52826.1| DNA polymerase II (Pol II) [Escherichia coli H299]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|296533190|ref|ZP_06895816.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis
           ATCC 49957]
 gi|296266484|gb|EFH12483.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis
           ATCC 49957]
          Length = 304

 Score = 40.5 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 39/154 (25%), Gaps = 36/154 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-------------HPVELWD---- 46
           L +D ET         G  +  E   ++ F +G D               P         
Sbjct: 51  LVLDVETTGLD----HGQDEIIELA-MLPFTYGLDGTLYSVGEAFSRLRQPARPIPPEVT 105

Query: 47  ---------CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
                           P+ +  A       ++AHN+ F+R      F  D     W C+L
Sbjct: 106 ALTGLTDAMVAGQSFTPEEV-AAFIGPAALVIAHNAGFDRR-FAEAFCPDFAAKPWACSL 163

Query: 98  V---LARSNGLPSALKAVGEALKLSSQKMEEGKE 128
                A        L  +     L         +
Sbjct: 164 HGVDWAAEGFEGRRLGDLAARHGLFFDGHRAVHD 197


>gi|330878790|gb|EGH12939.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 259

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 38/152 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            ++ +D ET     +      +  E  CV L           ++                
Sbjct: 9   RSIVLDTETTG---MPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHG 65

Query: 52  -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-------DI-PI 90
                         +     E +      ++ HN+ F+   +   F L       DI   
Sbjct: 66  ITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALIGAQDKADITRH 123

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + + TL++AR        +L A+ +   + +
Sbjct: 124 CKILDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|323975773|gb|EGB70869.1| DNA polymerase B protein [Escherichia coli TW10509]
          Length = 783

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 75/245 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYAEDVCVILFAFGFDDHPVELWD-----CVHD 50
             + ID ET    +L   G+        Y              +      D         
Sbjct: 151 KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPE---------NGDASALDFELEYVASR 201

Query: 51  PVMPQVLKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR------------ 92
           P + + L       + DV  +  N   F+  +L+     + + + + R            
Sbjct: 202 PQLLEKLNAWFANHDPDVI-IGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGF 260

Query: 93  -------------WICT--LVLARSNG-LPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                         I     + +        +L+ V + L      + EGK         
Sbjct: 261 KNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL------LGEGKS----IDNP 310

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRG 196
                  DR      E       Y   D  +  +IF + E +         L +     G
Sbjct: 311 WDRMDEIDRRF---AEDKPALATYNLKDCELVTQIFHKTEIMPF-------LLERATVNG 360

Query: 197 YCVDV 201
             VD 
Sbjct: 361 LPVDR 365


>gi|299771048|ref|YP_003733074.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. DR1]
 gi|298701136|gb|ADI91701.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. DR1]
          Length = 458

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 52/184 (28%), Gaps = 34/184 (18%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDDHPVE 43
             L +D ET        D              LT   I  Y      +      D   + 
Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVG-----DSENIH 285

Query: 44  LWD--CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDI--PIHRWI 94
                 + D  +   + + L +      I+AHN+ F+   L        L     +    
Sbjct: 286 GISDNFLKDKPLYAEIADTLFDYLKGAEIIAHNATFDMNFLDMEFRRAGLPALSEVCEVT 345

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL LA+S       +L A+    ++ ++       L+      + +  +         +
Sbjct: 346 DTLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDID 405

Query: 153 AWRL 156
           A   
Sbjct: 406 ALSQ 409


>gi|228990657|ref|ZP_04150622.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           pseudomycoides DSM 12442]
 gi|228769183|gb|EEM17781.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           pseudomycoides DSM 12442]
          Length = 930

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 43/149 (28%), Gaps = 34/149 (22%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILF--AF---------------GFDD 39
             + +D ET         D          ED  ++    +F               G D+
Sbjct: 4   RYVVVDLETTGNSWKDGKDRITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 40  HPVELWDCVHD-PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWIC 95
           + V+      D   M   L +         VAHN +F+   LK               I 
Sbjct: 64  NLVKQAPLFCDVAPMVAELLQ-----GAYFVAHNVHFDWNFLKEELKQAGYGEVNCPKID 118

Query: 96  TLVLARSNGL---PSALKAVGEALKLSSQ 121
           T+ LA+          L+ + +  +L   
Sbjct: 119 TVELAQILLPTADSYKLRDLAKKHELEHD 147


>gi|153834926|ref|ZP_01987593.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|156972536|ref|YP_001443443.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|148868652|gb|EDL67736.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
 gi|156524130|gb|ABU69216.1| hypothetical protein VIBHAR_00168 [Vibrio harveyi ATCC BAA-1116]
          Length = 210

 Score = 40.5 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 51/158 (32%)

Query: 4   LFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELWDCVHDP 51
           + +D ET S       L      K  ++         V L A    D   V++    H  
Sbjct: 31  VSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHHIRHQD 90

Query: 52  VMP-----QVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP------------ 89
           ++      + L + L+   +  +V ++  +++ +L           +P            
Sbjct: 91  LVDGISEKEALIKLLDFIGNRPLVGYHIRYDKKILDLACLRHLGFPLPNPLIEVSQVYHD 150

Query: 90  ------IHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
                  + +              +L A+ + L+L  Q
Sbjct: 151 KLERHLPNAYFD-----------LSLDAICKHLELPIQ 177


>gi|332879751|ref|ZP_08447441.1| hypothetical protein HMPREF9074_03194 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332682270|gb|EGJ55177.1| hypothetical protein HMPREF9074_03194 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 239

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 46/188 (24%), Gaps = 43/188 (22%)

Query: 21  ICKYAEDVCVILFA---FGFDDHP-VELWDCVHDPV--MPQVLKEALEN----TDVTIVA 70
              +AE   ++  +   F F                  + +     +E      +    A
Sbjct: 56  AGIWAEFGKIVCISVGYFSFRHEQRTFRVTSFTGEEDSLLRDFVRLVEEHFSRPNKLFCA 115

Query: 71  HNSY-FERTVLKACF---NLDIP-------IHRWI----CTLVLARSNGLPS--ALKAVG 113
           HN   F+   L        + IP          W      TL L +        +L  + 
Sbjct: 116 HNGKEFDFPYLSRRMIINGIRIPNKLQLFGKKPWEVPHLDTLDLWKFGDYKHYTSLTLLA 175

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE--I 171
             L + S K                      R+             YC+ D     +  +
Sbjct: 176 HTLGIPSPKD--------------DINGSQVRDVFYEENDIHRIATYCEKDTITVAQILL 221

Query: 172 FKRLEPLS 179
             R EPL 
Sbjct: 222 HLRYEPLL 229


>gi|327537477|gb|EGF24200.1| ribonuclease D [Rhodopirellula baltica WH47]
          Length = 433

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 68/271 (25%), Gaps = 43/271 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            +  D E              Y     + L       H   +         P    + L 
Sbjct: 53  VIGFDTE--------FVSEDCYR--PELCLVQVAAGKHLAVIDPYTVGDTKP--FWDILT 100

Query: 63  NTDVT-----IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEA 115
           +  +      ++AH +  E            PI     T + A   G   P++L  + + 
Sbjct: 101 DDQIEPGSRVVIAHAAREEIRFAYRYSGR--PIAGLFDTQLAAGFVGIEYPASLATLVQK 158

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L            +     KGET      R     +        Y   DVT   E+  +L
Sbjct: 159 L------------VGQTLPKGETRTNWRHRPLTKDQ------LTYALHDVTTLAEMHSKL 200

Query: 176 EPLSSKEQELWYLDQTI-NDRGYCVDVALAHT-LNQIVDVERTKLDQELESLTYGLVSSS 233
                    + +LD+     +   +D   +                 E+    +      
Sbjct: 201 IADVKALDRVSWLDEETDRLQKKVIDAEESENWQRVSGSSGLKPRQLEIIRHLWRWREEI 260

Query: 234 RCLEKL--KTWLFLETGLHLEDLTETTCQRV 262
              +    +  +  +  + L        +++
Sbjct: 261 ARTKNRLPRRVMRDDLMVELAKKGSPDTKKI 291


>gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 1437

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
             +    P+V+++ L+      +VAHN+ F+   + A +    L    +  I TL LAR 
Sbjct: 480 VANARPEPEVMQDFLDFCQGTILVAHNASFDVGFIDAAYQRNGLPTIENPVIDTLELARY 539

Query: 103 NGLPSA---LKAVGEALKLS 119
                    L  + +   +S
Sbjct: 540 LYPHLKSFRLNTLSKHFNVS 559


>gi|152968805|ref|YP_001333914.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953654|gb|ABR75684.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 243

 Score = 40.5 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 41/169 (24%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 7   RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTV-------LKACF 84
                  + D  +    K    +             +V HN+ F+          L    
Sbjct: 61  EAFGVHGIADEFLLD--KPTFADVADEFMDYIRGAELVIHNASFDIGFMDYEFSKLNRGI 118

Query: 85  NLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  +   +L LAR        +L A+    ++ + K      L+ 
Sbjct: 119 GKTETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 167


>gi|262212093|gb|ACY35663.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 40.5 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELSLPSPNQVMVGADLAGIELRMLSHF-------PARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +    L++ A   K     + + +A + 
Sbjct: 63  ADKIGISRELVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAEKKGKEIRQAYIEAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + E   + +           ++ 
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRKII 145


>gi|262212075|gb|ACY35654.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212091|gb|ACY35662.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212181|gb|ACY35707.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262342239|gb|ACY54630.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 40.5 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELSLPSPNQVMVGADLAGIELRMLSHF-------PARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +    L++ A   K     + + +A + 
Sbjct: 63  ADKIGISRELVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAEKKGKEIRQAYIEAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + E   + +           ++ 
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRKII 145


>gi|258648581|ref|ZP_05736050.1| 3'-5' exonuclease domain protein [Prevotella tannerae ATCC 51259]
 gi|260851360|gb|EEX71229.1| 3'-5' exonuclease domain protein [Prevotella tannerae ATCC 51259]
          Length = 201

 Score = 40.5 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 47/174 (27%), Gaps = 29/174 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L ID ETR      K  I K A      L     ++    L+        P  L   L 
Sbjct: 46  ILGIDTETR--PSFRKGTIHKVA------LLQVA-NEDLCCLFQLSCFGFAPD-LIHLLS 95

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  +  V  +   +  +L      D                  P     + + +K    K
Sbjct: 96  NKAIKKVGLSLKDDFFMLSKRHKFD------------------PQNCVDLQDYVKEMGIK 137

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
               ++L A        +     N        +    Y   D     +++K L+
Sbjct: 138 DMSLQKLFANVFHQRISKSAQLSNW-EAPIYTQSQKLYAATDAYACLKLYKELK 190


>gi|195037619|ref|XP_001990258.1| GH19240 [Drosophila grimshawi]
 gi|193894454|gb|EDV93320.1| GH19240 [Drosophila grimshawi]
          Length = 911

 Score = 40.5 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 32/178 (17%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            + ID E              +    C++  +    D    ++D +       +L   L 
Sbjct: 303 QIAIDVE--------HHSYRTFMGITCLVQMSTRTKD---YIFDTLILRDDMHILNLVLT 351

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQ 121
           +  V  + H    +   L+   +L + I     T   A++  L   +L  + +   L   
Sbjct: 352 DPKVLKILHGGDLDIEWLQR--DLSLYIVNMFDTHRAAKALNLARLSLAFLLKFY-LDMD 408

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                        K         R  P      +   +Y + D      I++RL    
Sbjct: 409 VD-----------KSLQLADWRMRPLP------QKLIDYARQDTHYLIYIYERLVNDL 449


>gi|15640327|ref|NP_229954.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|153822831|ref|ZP_01975498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|153827159|ref|ZP_01979826.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-2]
 gi|153831076|ref|ZP_01983743.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|227080513|ref|YP_002809064.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|229524741|ref|ZP_04414146.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|9654711|gb|AAF93473.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126519649|gb|EAZ76872.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
 gi|148873443|gb|EDL71578.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           623-39]
 gi|149738956|gb|EDM53274.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-2]
 gi|227008401|gb|ACP04613.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
           M66-2]
 gi|227012158|gb|ACP08368.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229338322|gb|EEO03339.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
           VL426]
          Length = 223

 Score = 40.5 bits (93), Expect = 1.00,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 52/186 (27%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELW----- 45
            + +D ET S       L      K  ++         V L A    D   V +      
Sbjct: 44  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLDSGSVRIHRIRHQ 103

Query: 46  DCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP----------- 89
           D        + L + +E   +  +V ++  +++T+L    +      +P           
Sbjct: 104 DLHDGLSEKEALLQLIEFIGNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQIYH 163

Query: 90  -------IHRWICTLVLARSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCKGETHEC 141
                   + +              +L+A+   L L    K +  ++ IA          
Sbjct: 164 DKLEKHLPNAYFD-----------LSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLTK 212

Query: 142 LYDRNK 147
                 
Sbjct: 213 GDLPQF 218


>gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
 gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
          Length = 1439

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 10/80 (12%)

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVLARS 102
           H     + + +       D  +V HN  F+   +          ++  +  I TL LAR 
Sbjct: 480 HGSKSEEEVFKLFREFCGDAIVVGHNVTFDMGFMNTGYVRHGMHEMQ-NPIIDTLTLARF 538

Query: 103 NGL---PSALKAVGEALKLS 119
                    L  + +   +S
Sbjct: 539 LYPNLRGYRLNTLAKKFDVS 558


>gi|218710187|ref|YP_002417808.1| Ribonuclease D [Vibrio splendidus LGP32]
 gi|218323206|emb|CAV19383.1| Ribonuclease D [Vibrio splendidus LGP32]
          Length = 397

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 27/145 (18%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           FD   + L D    D + P      L++T V  V H    +  V +  F         + 
Sbjct: 72  FDGETLSLIDPIALDEMTP--FVGLLKDTSVLKVLHACGEDLEVFQNAFG--CTPTPMVD 127

Query: 96  TLVLARSNGLPSALK---AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           T ++A   G   +      V E + +   K E   + +AR                    
Sbjct: 128 TQIMAAFLGHGLSTGFAALVSEFVGVDLDKSESRTDWLARPLS----------------- 170

Query: 153 AWRLFGEYCKGDVTVTREIFKRLEP 177
             +   +Y   DV     ++ +L  
Sbjct: 171 --QKQLDYAAADVHYLMPMYNKLLE 193


>gi|213052594|ref|ZP_03345472.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
 gi|213419335|ref|ZP_03352401.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213426609|ref|ZP_03359359.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
 gi|213609541|ref|ZP_03369367.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
 gi|289828970|ref|ZP_06546670.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
          Length = 371

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 122 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 165

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 166 TEAAGWLPAALDECRLMQQR 185


>gi|116283963|gb|AAH61472.1| Polg protein [Mus musculus]
          Length = 1013

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 58/236 (24%), Gaps = 16/236 (6%)

Query: 271 PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLP 330
                +   R    R +   +  L  +       R   +       G +   +   Q + 
Sbjct: 771 EINKMISFWRNAHKRISSQMVVWLPRSALP----RVVTRHPSFDEEGHYGAILP--QVVT 824

Query: 331 RPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
             + +   ++      PT +T+       +   +++ V A  G  LV AD+   E  + A
Sbjct: 825 AGTITRRAVE------PTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVDSQELWIAA 878

Query: 391 WMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGGAK 446
            +    +      T          +S        T       R   K+      Y  G  
Sbjct: 879 VLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNYGRIYGAGQS 938

Query: 447 AFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTA 502
             +++       L       K        +    +            +      T 
Sbjct: 939 FAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADGEWLVKQLNLPVDRTE 994


>gi|312137127|ref|YP_004004464.1| replicative DNA polymerase i [Methanothermus fervidus DSM 2088]
 gi|311224846|gb|ADP77702.1| replicative DNA polymerase I [Methanothermus fervidus DSM 2088]
          Length = 581

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 59/204 (28%), Gaps = 36/204 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-----------CVHD 50
             L  D E      +         E   +I+ +   +    ++               ++
Sbjct: 158 KILAFDIE------VRNPKGMPRPEKDEIIMISIVGNSGIKKVISSEGSTLNFVEEVSNE 211

Query: 51  PVMPQVLKEAL--ENTDVTIVAHNS-YFERTVL---KACFNLDIPIH----------RWI 94
             + +  KE +  EN D+  + +NS  F+   +        + + +           R  
Sbjct: 212 KEILERFKEIVKSENPDII-IGYNSDNFDFPYIRDRARKLGIKLDLGVDGSEIKFVRRGF 270

Query: 95  CTLVLARSNGLPSALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            T  + +   L   L  V     +L +  +E     +    K             +  E 
Sbjct: 271 STAAMIKGI-LHVDLYWVIRQYIRLDTYTLERVYYELFGEEKKLGIPGDELWKYWDSDEK 329

Query: 154 WRLFGEYCKGDVTVTREIFKRLEP 177
                +Y   D   T +I K++ P
Sbjct: 330 RDELFKYSLDDAESTYKIAKKILP 353


>gi|291280801|ref|YP_003497635.1| hypothetical protein DEFDS_P259 [Deferribacter desulfuricans SSM1]
 gi|290755503|dbj|BAI81879.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 420

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 59/173 (34%), Gaps = 14/173 (8%)

Query: 56  VLKEALENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAV 112
            L +     +  +V HN   F+  VL   +++      +    +L+          +K  
Sbjct: 134 KLLDLFIKQNNQLVFHNGISFDIRVLYDFYSIFHK--DFSD--LLSYIKDNLLIDTMKIY 189

Query: 113 GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            + L+   +K    K L+ ++   +  +     +        +    Y   DV    +I+
Sbjct: 190 KDKLQEPGEKKSNLKYLVKKYINYDLDKTYQKYDWTIRPID-KNALVYAAFDVIFLEKIY 248

Query: 173 KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
            ++      + E        N     +D+      ++++  +   L ++++ L
Sbjct: 249 DKMMEEIKIKNE------QRNQAVNNMDLKEMLMQHRMITEQINNLIEQIKPL 295


>gi|229472599|gb|ACQ72814.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 37/143 (25%), Gaps = 12/143 (8%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R        +  V AD +G+E R L           A   G            + A A++
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYL-------ARFDGGKFAKEVVEGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R  GK +   L Y GG       A            + K            +    
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGDSKLGLTA-----GAPKAQAVKKGKEIRSRIMADLDGFAA 120

Query: 485 MQENHPEHAIEDLFIGTACERVK 507
           +     E A   +  G     ++
Sbjct: 121 LNAAVQERAKSGVLKGLDGRPIR 143


>gi|229043387|ref|ZP_04191104.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH676]
 gi|228725968|gb|EEL77208.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH676]
          Length = 934

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ +
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEM 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|312912807|dbj|BAJ36781.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224451|gb|EFX49514.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 371

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 122 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 165

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 166 TEAAGWLPAALDECRLMQQR 185


>gi|23465521|ref|NP_696124.1| hypothetical protein BL0948 [Bifidobacterium longum NCC2705]
 gi|23326181|gb|AAN24760.1| narrowly conserved hypothetical protein [Bifidobacterium longum
           NCC2705]
          Length = 433

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 22/117 (18%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D T + H+S  +         + +       T + AR  GL    L AV E         
Sbjct: 95  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHY------- 144

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                L     K  +      R  P      R +  Y   DV V  E+   +     
Sbjct: 145 -----LGITLAKEHSAADWSYRPLP------RDWRNYAALDVEVLIELETMMRRDLK 190


>gi|308502794|ref|XP_003113581.1| hypothetical protein CRE_26056 [Caenorhabditis remanei]
 gi|308263540|gb|EFP07493.1| hypothetical protein CRE_26056 [Caenorhabditis remanei]
          Length = 444

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 45/159 (28%), Gaps = 36/159 (22%)

Query: 64  TDVTIVAHNSYFERT-VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL------ 116
            +  ++ HN  F+R   L+A    +    R++ T+ ++        +    +AL      
Sbjct: 193 KEKIVIGHNVGFDRARCLEAYQKENGSKIRFMDTMSMS---IPMFGMADHQQALFGMYDT 249

Query: 117 ---------------KLSSQKMEEGKELIARFCKGET----HECLYDRNKPNHREAWR-- 155
                          ++S   +    E    F K +      E    +     +E     
Sbjct: 250 DNNEANSDWVNTWKDRVSKNSLVAVHEHFYPFRKLQKHQDGDESKEKQRSAFVKEPIENI 309

Query: 156 -----LFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLD 189
                    YC  D  +  EI+  L P   K        
Sbjct: 310 RLKFQKLMTYCARDNILCAEIYFGLWPEFVKRFPHPATL 348


>gi|269120725|ref|YP_003308902.1| exonuclease RNase T and DNA polymerase III [Sebaldella termitidis
           ATCC 33386]
 gi|268614603|gb|ACZ08971.1| Exonuclease RNase T and DNA polymerase III [Sebaldella termitidis
           ATCC 33386]
          Length = 195

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 28/121 (23%)

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
           VAHN  F+R+       +   +     T++                   +   K    + 
Sbjct: 101 VAHNIKFDRSF------IPFMLKNQFDTMLE-----------------NVEIVKAGINEY 137

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
                   + +EC    N P    +      Y   DV +T  +F ++      + +++  
Sbjct: 138 YGTYK-WPKLNECARFYNIPFDDSSLHE-SLY---DVLITFRVFYKMSKHPIAKNKIFNF 192

Query: 189 D 189
            
Sbjct: 193 L 193


>gi|183599959|ref|ZP_02961452.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827]
 gi|188022234|gb|EDU60274.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827]
          Length = 234

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 27/145 (18%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFA----FGFDDHPVE----LWD---- 46
            L ID ET         +   G+   A D  ++L +    +  D+ PV+    + +    
Sbjct: 52  ILSIDLETTGLDPEKDRILSIGMVTIA-DSKILLKSAQHYYVNDNEPVKAETAVINHITP 110

Query: 47  --CVHDPVMPQVLKEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL-----V 98
                   +P  +   L E     I+AH S  E   L    N+      W  TL     +
Sbjct: 111 EQLSDGVSLPHAIASFLHEAKGKCILAHGSAIEHAFLSKALNIKELPLLWFDTLNIEKTL 170

Query: 99  LAR--SNGLPSALKAVGEALKLSSQ 121
           L+    N    +L A+    +L   
Sbjct: 171 LSHKNINRNDFSLSALRSRYQLPDY 195


>gi|206577790|ref|YP_002240302.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342]
 gi|290509928|ref|ZP_06549298.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
 gi|206566848|gb|ACI08624.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342]
 gi|289776644|gb|EFD84642.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
          Length = 243

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 41/169 (24%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 7   RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTV-------LKACF 84
                  + D  +    K    +             +V HN+ F+          L    
Sbjct: 61  EAFGVHGIADEFLLD--KPTFADVADEFMDYIRGAELVIHNASFDIGFMDYEFGKLNRGI 118

Query: 85  NLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  +   +L LAR        +L A+    ++ + K      L+ 
Sbjct: 119 GKTETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 167


>gi|167570838|ref|ZP_02363712.1| possible DNA polymerase/helicase [Burkholderia oklahomensis C6786]
          Length = 408

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 36/144 (25%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA---- 60
           F+D ET         G         + +     D              +P  +++     
Sbjct: 17  FVDLETTG-------GSAVEHRITEIGVVVVSADHVSTWTTLVNPRQAIPPFIQQLTGIT 69

Query: 61  ---------LEN---------TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                      +              VAHN+ F+R  L+A F            +CT+ L
Sbjct: 70  DDMVRGAPTFADVASALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP-DVLCTVRL 128

Query: 100 ARSNGL---PSALKAVGEALKLSS 120
           +R          L A+     L+ 
Sbjct: 129 SRVLFPRESRHGLDALIARHALTP 152


>gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis EO147]
          Length = 405

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 36/144 (25%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA---- 60
           F+D ET         G         + +     D              +P  +++     
Sbjct: 17  FVDLETTG-------GSAVEHRITEIGVVVVSADHVSTWTTLVNPRQAIPPFIQQLTGIT 69

Query: 61  ---------LEN---------TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                      +              VAHN+ F+R  L+A F            +CT+ L
Sbjct: 70  DDMVRGAPTFADVASALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNP-DVLCTVRL 128

Query: 100 ARSNGL---PSALKAVGEALKLSS 120
           +R          L A+     L+ 
Sbjct: 129 SRVLFPRESRHGLDALIARHALTP 152


>gi|161613674|ref|YP_001587639.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161363038|gb|ABX66806.1| hypothetical protein SPAB_01399 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|322616813|gb|EFY13721.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618052|gb|EFY14944.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625723|gb|EFY22542.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626173|gb|EFY22983.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633779|gb|EFY30519.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638933|gb|EFY35626.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640751|gb|EFY37401.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644138|gb|EFY40683.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649210|gb|EFY45648.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655369|gb|EFY51677.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660875|gb|EFY57106.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662828|gb|EFY59035.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668012|gb|EFY64171.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674226|gb|EFY70320.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675419|gb|EFY71493.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683166|gb|EFY79182.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686859|gb|EFY82837.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195248|gb|EFZ80428.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200159|gb|EFZ85245.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203843|gb|EFZ88861.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207397|gb|EFZ92345.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213750|gb|EFZ98532.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217380|gb|EGA02099.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220925|gb|EGA05358.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323224700|gb|EGA08971.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231403|gb|EGA15516.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235843|gb|EGA19922.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240412|gb|EGA24455.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245305|gb|EGA29305.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246673|gb|EGA30645.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253527|gb|EGA37355.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323263330|gb|EGA46866.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266778|gb|EGA50264.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268984|gb|EGA52440.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 371

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 64  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFASMVEEY 121

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 122 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 165

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 166 TEAAGWLPAALDECRLMQQR 185


>gi|156935271|ref|YP_001439187.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533525|gb|ABU78351.1| hypothetical protein ESA_03124 [Cronobacter sakazakii ATCC BAA-894]
          Length = 243

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 7   RQIVLDTETTGMNQI-----GAHYEGHRIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 60

Query: 41  PVELWDCVHDP---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DI 88
              +   + D           +     + +      +V HN+ F+   +   F +    I
Sbjct: 61  EAFMVHGISDEFLMNKPVFGDVVDDFLDYIR--GAELVIHNASFDIGFMDYEFGMLNRGI 118

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 119 PKTETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLD 167


>gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp.
           ART55/1]
          Length = 1603

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 31/142 (21%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVI---------LFAF--------GFDDHP 41
            +  D ET         + + G  K  +D  V+                       +D  
Sbjct: 547 YVVFDIETTGLSKKHNKIIEIGAVK-VKDGEVVDTFSEFINPGVPIPYQIEQLTSINDDM 605

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICTLVL 99
           V+  D     V+     E   +    +VAHN+ F+   ++     L +      + T+ L
Sbjct: 606 VK--DAPMFDVIVPRFVEFCGDD--IVVAHNASFDTGFVRMNAEELGLKFDNTVLDTMTL 661

Query: 100 ARSNGLPSA---LKAVGEALKL 118
           +           L  V + LK+
Sbjct: 662 SHILLPELGKFTLDRVCKELKV 683


>gi|260779555|ref|ZP_05888445.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604364|gb|EEX30668.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 210

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 51/163 (31%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELW----- 45
            + +D ET S       L      K  ++         V L A    D + V++      
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIIDNRIITSQPFEVRLRAPQSLDSNSVKIHQIRHS 89

Query: 46  DCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP----------- 89
           D        Q L + L    +  +V ++  +++ +L    K      +P           
Sbjct: 90  DLADGIDEKQALTQLLAFVGNRPLVGYHIRYDKKILDLACKRHLGFPLPNPLIEVSQIYH 149

Query: 90  -------IHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
                   + +              +L+A+ + L L  Q   +
Sbjct: 150 DKLEKHLPNAYFD-----------LSLEAICKHLDLPMQSKHD 181


>gi|226310490|ref|YP_002770384.1| hypothetical protein BBR47_09030 [Brevibacillus brevis NBRC 100599]
 gi|226093438|dbj|BAH41880.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 49/186 (26%), Gaps = 42/186 (22%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDD-----HPVELWDCVHDPVMPQVLK--- 58
           D E    +DL   G      D  + + A                       +P  ++   
Sbjct: 50  DLE-VVVVDLETTGFYPDHGDAIISMGAVAMRGEHLLLGDSFYTLVNPGRAIPPHIRSLT 108

Query: 59  -----------EALEN--------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
                        LE          D  +VAH+S  ER  L+      +     HR + T
Sbjct: 109 GITDDMVADAPPLLEALSRFFQYVGDRPLVAHHSRHEREFLRSGLWKTSRRPFTHRMLDT 168

Query: 97  LVLARSNGLP---SALKAVGEALKLSS--------QKMEEGKELIARFCKGETHECLYDR 145
           ++L R    P    +L A+  A  +            +  G        K ++      R
Sbjct: 169 MLLIRLLNNPIGNGSLDALCAAHDIPISRRHHAYCDALAAGTLWAKYLVKAQSQGFTNLR 228

Query: 146 NKPNHR 151
                 
Sbjct: 229 QVYEAA 234


>gi|117920808|ref|YP_870000.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3]
 gi|117613140|gb|ABK48594.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3]
          Length = 242

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 47/165 (28%), Gaps = 51/165 (30%)

Query: 1   MATLF-------IDFETRSPIDLTKCGICKYAEDVCVILFAF------------------ 35
           M  +        +D ET     + +     Y     +I                      
Sbjct: 1   MNIISNASRQVILDTETTG---MNQGSGAVYLGH-RIIEIGCVEVINRRLTGRYFHQYIN 56

Query: 36  ---GFDDHPVELWDCVHDP--------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
                D   + +     +          + Q   + +  +   IVAHN+ F+ + +   F
Sbjct: 57  PGQAIDPEAIAVHGITDERVANEPRFHQIAQEFIDFI--SGAEIVAHNANFDVSFMDHEF 114

Query: 85  NLDIPIHR-------WICTLVLARSNGLPS--ALKAVGEALKLSS 120
           +L  P+          + +L +A+         L A+ +   + +
Sbjct: 115 SLLQPLGPKTSEICEILDSLDIAKFLHPGQKNNLDALCKRYGIDN 159


>gi|238782663|ref|ZP_04626693.1| DNA damage-inducible DNA polymerase II [Yersinia bercovieri ATCC
           43970]
 gi|238716323|gb|EEQ08305.1| DNA damage-inducible DNA polymerase II [Yersinia bercovieri ATCC
           43970]
          Length = 790

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 23/97 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGIC------KYA------EDVCVILFAFGFDDHPVELWDCVH 49
             L +D ET    +L   G+        Y       +D      +   D +   +     
Sbjct: 154 KLLSLDIETSEHGELYCIGLEGCGQRQVYMLGPPNGDDAE----SAALDFNLEYV---AS 206

Query: 50  DPVMPQVLKEALE--NTDVTIVAHNS-YFERTVLKAC 83
            P++ + L + LE  + D   +  N   F+  VL+  
Sbjct: 207 RPLLLEKLNQWLERYDPDAI-IGWNLVQFDLRVLQKH 242


>gi|329945641|ref|ZP_08293374.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528644|gb|EGF55609.1| 3'-5' exonuclease [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 372

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 53/187 (28%), Gaps = 28/187 (14%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D  +    +Y +D  ++      D     L D V    +   L   L+  +   + H +
Sbjct: 3   VDAERASGFRYGQDAYLV--QLRRDGVGTLLIDPVTCGPLTTELAAVLDGPE--WILHAA 58

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNG-LPSALKAVGEA-LKLSSQKMEEGKELIA 131
             +   L A   L +       T + AR  G     L AV E  L L   K     +   
Sbjct: 59  DQDIPCLTA---LGLRSASLFDTELAARLLGRQHVGLGAVIEETLGLRLAKDHAAADW-- 113

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
                        R  P        +  Y   DV +  ++   L      + +  +  Q 
Sbjct: 114 -----------STRPLP------ASWLIYAALDVELLIDLRDALAAELETDGKSQWAAQE 156

Query: 192 INDRGYC 198
                  
Sbjct: 157 FEHVRTR 163


>gi|317482293|ref|ZP_07941314.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916309|gb|EFV37710.1| 3'-5' exonuclease [Bifidobacterium sp. 12_1_47BFAA]
          Length = 433

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 22/117 (18%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D T + H+S  +         + +       T + AR  GL    L AV E         
Sbjct: 95  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHY------- 144

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                L     K  +      R  P      R +  Y   DV V  E+   +     
Sbjct: 145 -----LGITLAKEHSAADWSYRPLP------RDWRNYAALDVEVLIELETMMRRDLK 190


>gi|300723126|ref|YP_003712424.1| RNase D, processes tRNA [Xenorhabdus nematophila ATCC 19061]
 gi|297629641|emb|CBJ90244.1| RNase D, processes tRNA precursor [Xenorhabdus nematophila ATCC
           19061]
          Length = 379

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 52/186 (27%), Gaps = 46/186 (24%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D +      Q LK
Sbjct: 28  IALDTEFVRTRTYY---------------PQLGLIQL-FDGEQLSLIDPLEISQ-WQPLK 70

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGEA 115
             L + DV  + H    +  V    F         I T VLA   G P +      V E 
Sbjct: 71  ALLVDPDVLKLIHAGSEDLEVFGNSF--QCLPTPMIDTQVLAAFIGHPISCGFATLVAEY 128

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
           L +   K E   + +AR                      R   EY   DV     +   L
Sbjct: 129 LHVELDKSESRTDWLARPLS-------------------RKQCEYAAADVYYLLPLADIL 169

Query: 176 EPLSSK 181
              + +
Sbjct: 170 LKKTEQ 175


>gi|194445618|ref|YP_002041074.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|200390008|ref|ZP_03216619.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|194404281|gb|ACF64503.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|199602453|gb|EDZ00999.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 375

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 126 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 169

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 170 TEAAGWLPAALDECRLMQQR 189


>gi|27479696|gb|AAO17223.1| DnaQ [Photorhabdus luminescens]
          Length = 248

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQVVLDTETTG---MNKLGVHY--EGHKIIEIG-AVEVVNRRLTGRHFHVYIQPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACFN---LDI 88
                  + D  +    K    +             ++ HN+ F+   +   F     DI
Sbjct: 61  EAFEVHGISDEFLQD--KPLFADVADEFVEFIRGAELIIHNAPFDIGFIDYEFGKLDRDI 118

Query: 89  PIH----RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P      +   +L LAR         L A+ +   + + K      L+ 
Sbjct: 119 PPTADFCKITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLD 167


>gi|16760707|ref|NP_456324.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29141535|ref|NP_804877.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|25289178|pir||AB0725 ribonuclease D [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16503004|emb|CAD05500.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137162|gb|AAO68726.1| ribonuclease D [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 375

 Score = 40.5 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 126 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 169

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 170 TEAAGWLPAALDECRLMQQR 189


>gi|262044050|ref|ZP_06017130.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330005755|ref|ZP_08305367.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
 gi|259038622|gb|EEW39813.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328536123|gb|EGF62511.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
          Length = 246

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 41/169 (24%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTV-------LKACF 84
                  + D  +    K    +             +V HN+ F+          L    
Sbjct: 64  EAFGVHGIADEFLLD--KPTFADVADEFMDYIRGAELVIHNASFDIGFMDYEFSKLNRGI 121

Query: 85  NLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  +   +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 GKTETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|219683338|ref|YP_002469721.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219620988|gb|ACL29145.1| DNA polymerase III polC-type [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 123

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 27/105 (25%), Gaps = 34/105 (32%)

Query: 1   MATLFIDFETRS---PIDLTKCGICKYAEDVCVI-------------------LFAFG-- 36
           M  + +D ET       D           D  ++                   L      
Sbjct: 9   MNYISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQLVNPGRRVSARITELTGISNE 68

Query: 37  -FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL 80
             +D PV          +        EN  +  V HN+ F+ + L
Sbjct: 69  MLEDQPVI-------EDILGDFIHWTENDRL--VGHNTKFDLSFL 104


>gi|221053416|ref|XP_002258082.1| exonuclease [Plasmodium knowlesi strain H]
 gi|193807915|emb|CAQ38619.1| exonuclease, putative [Plasmodium knowlesi strain H]
          Length = 414

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 82/292 (28%), Gaps = 20/292 (6%)

Query: 2   ATLFIDFE-TRSPIDLTKCGICKYAEDVCVILF---AFGFDDHPVELWDCVHDPVMPQVL 57
             + +DFE T        C +  Y E+         +         ++D +    + + +
Sbjct: 103 DIIAVDFEGTNLGKYGKVCIMQVYTEERTPGGVHPKSECLSREKYYIFDLL-KMSVIKSV 161

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           K+ +EN     + H+   + + L     +         T          +    + +   
Sbjct: 162 KKIIENKKTLKLVHDCREDSSALYNQLGIKFE--NVYDTSRAHMLLMEKNRNSDIYQVSF 219

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF-GEYCKGDVTVTREIFKRLE 176
           L       G   I   C     + +Y   K             Y   +V     +++  +
Sbjct: 220 LQLLNDYLG---IKDDCLSSIKKEMYKNEKIWEVRPLSKMSIIYALKNVKYLFPLYRIFD 276

Query: 177 PL------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIV--DVERTKLDQELESLTYG 228
            +        K ++        +     VD+A    + Q +           +L S   G
Sbjct: 277 NMLSKKIVLEKSKDFVNYCFMNSRYKLPVDLAKRGNVVQAMLVSKSMLNCVFKLNSTRKG 336

Query: 229 LVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           +  +   + + +     +  L +    ++  Q++L   K            R
Sbjct: 337 IACTPSSVAQFRDVKVGDVVLCVIS-NKSIDQKILYLCKHDDVYDYWNLKER 387


>gi|197927293|ref|NP_001128149.1| Werner syndrome ATP-dependent helicase [Pongo abelii]
 gi|55726573|emb|CAH90053.1| hypothetical protein [Pongo abelii]
          Length = 1486

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 61/220 (27%), Gaps = 38/220 (17%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    + K  +   V L      +    L+      V PQ LK  LEN  V        
Sbjct: 82  DMEWPPLYKKRKLGKVALIQLCVSESKCYLFHISSMSVFPQGLKMLLENKAVKK------ 135

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKME-----EGKE 128
                      + I   +W       +        LK   E   ++++K++         
Sbjct: 136 ---------AGVGIEGDQW-------KLLRDFDIKLKNFVELADVANKKLKCTETWSLNS 179

Query: 129 LIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWY 187
           L+      +  +    R     +         Y   D      I++ L  +     + + 
Sbjct: 180 LVKHPLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGFIIYRNL-EILDDTVQRFA 238

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTY 227
           +++            L   +N+ +     ++    + L  
Sbjct: 239 INKEEE--------ILLSNMNKQLTSISEEVMDLAKHLPD 270


>gi|121998681|ref|YP_001003468.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
 gi|121590086|gb|ABM62666.1| putative PAS/PAC sensor protein [Halorhodospira halophila SL1]
          Length = 707

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 69  VAHNSYFERTVLKACFNL-DIPI-HRWICTLVLA-RSNG--LPSALKAVGEALKLS 119
           VAHN+ F+   ++       +   +  + TL+L+   +       L+A+   L + 
Sbjct: 599 VAHNAAFDMKFIRLKEGQCGLKFENPVLDTLLLSVFLHDHTPEHTLEAIANRLGVE 654


>gi|46190415|ref|ZP_00206459.1| COG0349: Ribonuclease D [Bifidobacterium longum DJO10A]
 gi|189439553|ref|YP_001954634.1| ribonuclease D [Bifidobacterium longum DJO10A]
 gi|189427988|gb|ACD98136.1| Ribonuclease D [Bifidobacterium longum DJO10A]
          Length = 433

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 22/117 (18%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D T + H+S  +         + +       T + AR  GL    L AV E         
Sbjct: 95  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHY------- 144

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                L     K  +      R  P      R +  Y   DV V  E+   +     
Sbjct: 145 -----LGITLAKEHSAADWSYRPLP------RDWRNYAALDVEVLIELETMMRRDLK 190


>gi|326404838|ref|YP_004284920.1| ribonuclease D [Acidiphilium multivorum AIU301]
 gi|325051700|dbj|BAJ82038.1| ribonuclease D [Acidiphilium multivorum AIU301]
          Length = 392

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 42/165 (25%), Gaps = 21/165 (12%)

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
             + V + D   + +    L     N  VT V H    +  +                T 
Sbjct: 55  GANDVAVIDAQAEGLDLAPLGALFANPAVTKVFHACRQDIEIFL--LKFGAVPTPLFDTQ 112

Query: 98  VLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
           V A   G        G+ +            L++    G   +     +      +    
Sbjct: 113 VAAMVAGF-------GDQVGYD--------TLVSSLAGGRIDKAHRFSDWSARPLSRAQ- 156

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
             Y   DV  T  +    E L ++      LD    +     D A
Sbjct: 157 IAYAAADV--TW-LRPVYEGLRARLTREGRLDWVAEEAAVLADPA 198


>gi|311064600|ref|YP_003971325.1| ribonuclease D [Bifidobacterium bifidum PRL2010]
 gi|310866919|gb|ADP36288.1| Ribonuclease D [Bifidobacterium bifidum PRL2010]
          Length = 428

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 22/131 (16%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D   + H+S  +        ++ +       T + AR  GL    L AV E         
Sbjct: 91  DAVWILHDSLQDLPGFA---DIGLTPQALFDTEIAARMLGLHRFGLAAVTEHY------- 140

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L     K  +      R  P      R +  Y   DV +  E+ ++++     + 
Sbjct: 141 -----LGVTLAKEHSAADWSYRPLP------RDWRNYAALDVELLIELRRKMQRELKAQG 189

Query: 184 ELWYLDQTIND 194
           +  + D+    
Sbjct: 190 KDGWADEEFRY 200


>gi|307717390|gb|ADN88748.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP- 106
            V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL LAR      
Sbjct: 63  DVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKADNAVVDTLELARFLYPHF 120

Query: 107 --SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               L  + +   +      +     E  A        +     +   H       GE
Sbjct: 121 KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDINFHDSLNDYMGE 178


>gi|307717338|gb|ADN88722.1| DNA polymerase III [Listeria welshimeri]
 gi|307717340|gb|ADN88723.1| DNA polymerase III [Listeria welshimeri]
 gi|307717362|gb|ADN88734.1| DNA polymerase III [Listeria welshimeri]
 gi|307717368|gb|ADN88737.1| DNA polymerase III [Listeria welshimeri]
 gi|307717392|gb|ADN88749.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP- 106
            V+ +  KE   + D  +VAHN+ F+   +   +    L+   +  + TL LAR      
Sbjct: 63  DVVLKRFKEW--SGDDILVAHNASFDMGFINTAYEKVGLEKADNAVVDTLELARFLYPHF 120

Query: 107 --SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               L  + +   +      +     E  A        +     +   H       GE
Sbjct: 121 KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDINFHDSLNDYMGE 178


>gi|229472283|gb|ACQ72656.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|229472335|gb|ACQ72682.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 37/143 (25%), Gaps = 12/143 (8%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R        +  V AD +G+E R L           A   G            + A A++
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYL-------ARFDGGKFAKEVVEGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R  GK +   L Y GG       A            + K            +    
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGDSKLGLTA-----GAPKAQAVKKGKEIRSRIMADLDGFAA 120

Query: 485 MQENHPEHAIEDLFIGTACERVK 507
           +     E A   +  G     ++
Sbjct: 121 LNAAVQERAKSGVLKGLDGRPIR 143


>gi|259908266|ref|YP_002648622.1| ribonuclease D [Erwinia pyrifoliae Ep1/96]
 gi|224963888|emb|CAX55391.1| Ribonuclease D [Erwinia pyrifoliae Ep1/96]
 gi|283478197|emb|CAY74113.1| rnd [Erwinia pyrifoliae DSM 12163]
          Length = 369

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 49/202 (24%), Gaps = 44/202 (21%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-- 56
           L +D E     T                   + L    +D   + L D +    +     
Sbjct: 21  LALDTEFVRTRTYY---------------PRLGLIQL-YDGETISLIDPL---PITDWTP 61

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            ++ L +  V    H    +  V +  F   +     I T +LA  +G P +        
Sbjct: 62  FRDLLLDQQVIKYLHAGSEDLEVFQHEFG--VLPQPMIDTQILAAFSGRPLS-------- 111

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                    G   I     G   +    R     R        Y   DV     I  +L 
Sbjct: 112 --------CGFATIVESFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIASKLV 163

Query: 177 PLSSKEQELWYLDQTINDRGYC 198
             +    ++             
Sbjct: 164 DETEAAGQMAAALDECRLLCQR 185


>gi|16765158|ref|NP_460773.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194448143|ref|YP_002045863.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197262566|ref|ZP_03162640.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205358997|ref|ZP_02666341.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|16420349|gb|AAL20732.1| RNase D [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194406447|gb|ACF66666.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197240821|gb|EDY23441.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205339484|gb|EDZ26248.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|261247002|emb|CBG24819.1| Ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993774|gb|ACY88659.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158341|emb|CBW17840.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332988704|gb|AEF07687.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 375

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 25  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 68  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFASMVEEY 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 126 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 169

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 170 TEAAGWLPAALDECRLMQQR 189


>gi|310767817|gb|ADP12767.1| ribonuclease D [Erwinia sp. Ejp617]
          Length = 369

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 49/202 (24%), Gaps = 44/202 (21%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-- 56
           L +D E     T                   + L    +D   + L D +    +     
Sbjct: 21  LALDTEFVRTRTYY---------------PRLGLIQL-YDGETISLIDPL---PITDWTP 61

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            ++ L +  V    H    +  V +  F   +     I T +LA  +G P +        
Sbjct: 62  FRDLLLDQQVIKYLHAGSEDLEVFQHEFG--VLPQPMIDTQILAAFSGRPLS-------- 111

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                    G   I     G   +    R     R        Y   DV     I  +L 
Sbjct: 112 --------CGFATIVESFTGIALDKSESRTDWLARPLSEKQCRYAAADVFYLLPIASKLV 163

Query: 177 PLSSKEQELWYLDQTINDRGYC 198
             +    ++             
Sbjct: 164 DETEAAGQMAAALDECRLLCQR 185


>gi|281421262|ref|ZP_06252261.1| DNA polymerase III, alpha subunit [Prevotella copri DSM 18205]
 gi|281404797|gb|EFB35477.1| DNA polymerase III, alpha subunit [Prevotella copri DSM 18205]
          Length = 1236

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/202 (7%), Positives = 47/202 (23%), Gaps = 17/202 (8%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
             ++   ++      + + +   +    ++L+R     +  ++      +  +K      
Sbjct: 736 ITYDIPCMEKYLKDTYGITVYQEQV---MLLSRQLASFTRGESDALRKAMGKKKKAIVDA 792

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           +  +F K         +        W  F  Y       T   +  +   ++  +  +  
Sbjct: 793 MKPKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHAT--CYSWVAYQTAYLKAHYPA 850

Query: 189 DQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETG 248
           +                     +     +            V+ S  +  +     +  G
Sbjct: 851 EYMAALMTRRF------AQITEITKLMEECQSMGIKTLGPDVNESYRVFGVNEHGEIRFG 904

Query: 249 LHLED--LTETTCQRVLSSNKK 268
           L              V    K 
Sbjct: 905 LSAIKGMGAPAADAIVAERLKN 926


>gi|221369901|ref|YP_002520997.1| Exonuclease [Rhodobacter sphaeroides KD131]
 gi|221162953|gb|ACM03924.1| Exonuclease [Rhodobacter sphaeroides KD131]
          Length = 293

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 28/152 (18%)

Query: 2   ATLFIDFETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHP------VELWDCVHD--- 50
             + +D ET       + + G+     D  +  F+   +         V L     D   
Sbjct: 11  RFIALDVETACSDAGSICQIGLACVFPDNRIHTFSTLVNPGTRFDPFNVRLHGIGPDHVS 70

Query: 51  -----PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR- 101
                  +   L   L    +     +S F++  L         + P  RW  ++ +AR 
Sbjct: 71  GALRFDELLDHLFPLLSRHHLV---QHSNFDKQALNAACRSCGREPPDFRWADSVTIARR 127

Query: 102 -----SNGLPSALKAVGEALKLSSQKMEEGKE 128
                       L  +   L L     + G++
Sbjct: 128 AWPELLRNGGHGLGNLKRVLGLDFNHHDAGED 159


>gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
 gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
          Length = 1459

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 75/282 (26%), Gaps = 41/282 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAE---DVCVI-LFAFGFDDHPVELWDCVHDPVMPQVLK 58
            +  D ET     +    I   A    D  +   F+   +      ++  +   +   + 
Sbjct: 422 YIVFDIETTGFSSIKDAIIEIGAVKVTDGKITDRFSTFVNPKRPIPFEITNLTSITDEM- 480

Query: 59  EALENTDV--------------TIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
             +++  +               +VAHN+ F+   ++       L      ++ T+ LAR
Sbjct: 481 -VMDSPTIDVVLPQFLEFAGDGVLVAHNAGFDVGFIEQNCRSLGLS-DEFVYLDTVALAR 538

Query: 102 SNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLF 157
                 +   L  V +AL +S   +E     +            +       +    +  
Sbjct: 539 VLLPTLSKYKLNIVAKALNIS---LENHHRAVDDAEATAEIFVKFTEMLKKDQVGTLKEV 595

Query: 158 GEYCKGDVTV-----TREIFKRLEPLSSKEQELWYL---DQTINDRGYCVDVALAHTLNQ 209
             Y   +V       T  I    +    +      +     T   R   +  +L +   +
Sbjct: 596 NRYGDRNVNAIRKMPTHHIIILAKNDIGRYNLYQLISQSHMTYYARRPRIPKSLLNEHRE 655

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
            + +       EL          S          +    +  
Sbjct: 656 GLLIGSACEAGELYQ--AVHEKRSAQQIARLAEFYDYYEIQP 695


>gi|21231744|ref|NP_637661.1| ribonuclease D [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768130|ref|YP_242892.1| ribonuclease D [Xanthomonas campestris pv. campestris str. 8004]
 gi|21113449|gb|AAM41585.1| ribonuclease D [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573462|gb|AAY48872.1| ribonuclease D [Xanthomonas campestris pv. campestris str. 8004]
          Length = 362

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 49/204 (24%), Gaps = 40/204 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L      +  + +   +    M   LK
Sbjct: 22  IGLDTEFIRERTYW---------------PQLALVQMAIGEEILLIDPLIPG--MTDALK 64

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           + L   D+  V H++  +    K      +       T +                A   
Sbjct: 65  DWLIAPDIVKVMHSASEDLVTFKCACG--VLPRPLFDTQI---------------AAALA 107

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                   ++L+         +     +      +     EY   DV     I   L   
Sbjct: 108 GVGGGMGYQKLVQEVTGTLLTKGETRSDWMRRPLSPAQL-EYAADDVRYLFAIHDALTAK 166

Query: 179 SSKEQELWYLDQTINDRGYCVDVA 202
            + +  L +L +        V+  
Sbjct: 167 LTAQDRLGWLAEDGERLLGTVEHD 190


>gi|311068754|ref|YP_003973677.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus atrophaeus 1942]
 gi|310869271|gb|ADP32746.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus atrophaeus 1942]
          Length = 930

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL-- 105
             + + + + L       VAHN +F+   +K         +P    + T+ L+R      
Sbjct: 73  EAVAEEVFQLL--DGAYFVAHNIHFDLGFVKYELNEAGFRLPDCEVLDTVELSRIVYPGF 130

Query: 106 -PSALKAVGEALKLSSQ 121
               L  + E L+L  +
Sbjct: 131 EGYKLTELSEELQLKHE 147


>gi|288937007|ref|YP_003441066.1| DNA polymerase III subunit epsilon [Klebsiella variicola At-22]
 gi|288891716|gb|ADC60034.1| DNA polymerase III, epsilon subunit [Klebsiella variicola At-22]
          Length = 246

 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 41/169 (24%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTV-------LKACF 84
                  + D  +    K    +             +V HN+ F+          L    
Sbjct: 64  EAFGVHGIADEFLLD--KPTFADVADEFMDYIRGAELVIHNASFDIGFMDYEFGKLNRGI 121

Query: 85  NLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  +   +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 GKTETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum BKT015925]
          Length = 1443

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 23/138 (16%)

Query: 4   LFIDFETR---SPID-LTKCGICKYAEDVCVILFAFGFDDH-PVEL----------WDCV 48
           +  D ET    S  D + + G  K      +  F+   +    V             D  
Sbjct: 431 VVFDLETTGFSSAYDKIIEIGAVKIKNGNIIDSFSTFVNPEIKVPYNITELTSITNDDVK 490

Query: 49  HDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNG 104
           +   +  +L + +E   D  +VAHN+ F+ + ++      N+DI  +  + T+ LA+   
Sbjct: 491 NADTIDSILPKFIEFCGDSVLVAHNANFDMSFIRKNCNDLNIDIN-YTVMDTVPLAKFLF 549

Query: 105 LP---SALKAVGEALKLS 119
                  L  + + L +S
Sbjct: 550 PELKRYKLNTIAKHLGVS 567


>gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 484

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 43/146 (29%), Gaps = 46/146 (31%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAF-GFDDHPVE-LWDCVHDPV----------- 52
           +D ET               +   +   AF  FD   V      VH              
Sbjct: 46  VDLETTGGS----------FDTDRITEIAFLRFDGGTVTPYHSLVHPERPIPPFIRRLTG 95

Query: 53  --------------MPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95
                         +   L   L      ++AHNS F+ T L+  F    L       +C
Sbjct: 96  IGDETVAGAPPFSALAHELLPLLR--GCILLAHNSKFDYTFLRRAFARCGLPFA-APTLC 152

Query: 96  TLVLARSNGL---PSALKAVGEALKL 118
           T+ L+R         +L+++ E   +
Sbjct: 153 TVQLSRRLYPQFYKHSLESIIERHGI 178


>gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
 gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
           16823]
          Length = 458

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 23/140 (16%)

Query: 1   MATLFIDFETR--SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD------------ 46
           M    +D ET   S        I  Y  D   I+ +F    +P                 
Sbjct: 1   MNYAIVDIETTGGSTKSSKITEIAIYKHDGMKIIDSFDTLVNPEMPIPEFISRLTGIHDD 60

Query: 47  -CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
              + P   ++ K+ +E   D   VAHN  F+  +++        D       CT+  +R
Sbjct: 61  MVENAPKFYEIAKQIIEFTEDCIFVAHNVGFDYGIIRHEFKLLGYDYRKAHL-CTVRASR 119

Query: 102 SNGLPS---ALKAVGEALKL 118
                    +L  + +AL +
Sbjct: 120 YVIPDHESYSLGKLTKALGI 139


>gi|291067016|gb|ADD74132.1| DNA polymerase III epsilon subunit-like protein [Rickettsia felis]
          Length = 377

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 26/104 (25%)

Query: 4   LFIDFETRSP----IDLTKCGI--CKYAEDVCVILFAFGFDD-----HPVELWDCV---- 48
           +F+D ET         + + G+   +Y ED  +       D+      P +         
Sbjct: 126 IFLDTETTGLSHEKDKILELGMVKFEYTEDGRIYQI---VDELNQYQDPQQPIPLRITEL 182

Query: 49  --------HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
                       + Q            I+AHN+ F+R      F
Sbjct: 183 TGITDEMVQGKAIDQEAVTQFLEEVDIIIAHNAAFDRPFFDRMF 226


>gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397]
 gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall]
 gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC
           3502]
 gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A str. Hall]
          Length = 1432

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 21/137 (15%)

Query: 4   LFIDFETR---SPIDLTKCGICKYAEDVCVI-LFAFGFDDH----------PVELWDCVH 49
           +  D ET    S  D          E   ++  F+   +                 D V 
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDRFSEFVNPERSIPDKITELTSITDDMVD 478

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIPIHR-WICTLVLARSNGL 105
           D      +     +   D  +VAHN+ F+ + + K C +L I      + T+ L+R    
Sbjct: 479 DKEAIDKILPRFIDFIGDSVVVAHNASFDVSFINKNCKDLKIEFENSVMDTVTLSRFLFP 538

Query: 106 P---SALKAVGEALKLS 119
                 L  + + L +S
Sbjct: 539 ELKRYKLNVIAKHLGIS 555


>gi|283783345|ref|YP_003374099.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05]
 gi|283441638|gb|ADB14104.1| 3'-5' exonuclease [Gardnerella vaginalis 409-05]
          Length = 476

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 39/182 (21%)

Query: 6   IDF-ETRSP-IDLTKCGICKYAEDVC-VILFAFGFDDHPVEL------------WDCVHD 50
           ID  E       L + G    A D      F +  +D  ++              +    
Sbjct: 19  IDTLEAYKDYCSLLEAGSGPLAADAERASGFRYSHEDWLIQFKRKGAGIGLLDPIELTKL 78

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-AL 109
                   +A+ +  V  + H+S  +       FN+ +       T + A+  G     L
Sbjct: 79  GADWNEFNKAVGD--VPWIIHDSMQDLPGF---FNIGLRPLALFDTEIAAKLLGRKRFGL 133

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            +V E              L     K  +      R  P      R +  Y   DV +  
Sbjct: 134 SSVTEYY------------LGLTLAKEHSAADWSYRPLP------RDWRNYAALDVELLI 175

Query: 170 EI 171
           E+
Sbjct: 176 EL 177


>gi|325970703|ref|YP_004246894.1| exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy]
 gi|324025941|gb|ADY12700.1| Exonuclease RNase T and DNA polymerase III [Spirochaeta sp. Buddy]
          Length = 197

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILF--AFG--------FDDHPVELWDCVHD 50
           M  + IDFET +      C +     D   +L    +         FD     +     +
Sbjct: 1   MNYVAIDFETANGYPGGACSVALARFDEEGMLLDTYYSLIHPKHPYFDPSMTAVHQLKDE 60

Query: 51  PVMP----QVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
             +      V+   + +      +VAHN+ F+  VLK     ++L+     ++CTL +AR
Sbjct: 61  ECLAAPEFDVIWPQMRDFIGKDLLVAHNAVFDMGVLKGCFEVYDLEARQMTYLCTLTIAR 120

Query: 102 SNGL---PSALKAVGEALKLSSQKMEEGKELI 130
                     L  + +   +  Q      + I
Sbjct: 121 KVWPKMLSYKLSYLVDYYGMEYQAHYALDDAI 152


>gi|269962464|ref|ZP_06176813.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi 1DA3]
 gi|269832760|gb|EEZ86870.1| putative DNA polymerase III, epsilon subunit [Vibrio harveyi 1DA3]
          Length = 210

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 51/158 (32%)

Query: 4   LFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELWDCVHDP 51
           + +D ET S       L      K  ++         V L A    D   V++    H  
Sbjct: 31  VSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHHIRHQD 90

Query: 52  VMP-----QVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP------------ 89
           ++      + L + L+   +  +V ++  +++ +L           +P            
Sbjct: 91  LVDGISEKEALIKLLDFIGNRPLVGYHIRYDKKILDLACLRHLGFPLPNPLIEVSQIYHD 150

Query: 90  ------IHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
                  + +              +L A+ + L+L  Q
Sbjct: 151 KLERHLPNAYFD-----------LSLDAICKHLELPIQ 177


>gi|262212059|gb|ACY35646.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212071|gb|ACY35652.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212081|gb|ACY35657.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212101|gb|ACY35667.1| DNA polymerase [Uncultured T7-like podovirus]
 gi|262212145|gb|ACY35689.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELSLPSPNQVMVGADLAGIELRMLSHF-------PARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +       +    L++ A   K     + + +A + 
Sbjct: 63  ADKIGISRELVKTVTYAFLYGAGDEKI---GHSYDKLLSSKAAEKKGKEIRQAYIEAIDG 119

Query: 482 CRWMQENHPEHAIEDLFIGTACERVK 507
              + E   + +           ++ 
Sbjct: 120 LDKLLEAIKKASERGFIKALDGRKII 145


>gi|227546007|ref|ZP_03976056.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239621937|ref|ZP_04664968.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322688886|ref|YP_004208620.1| exonuclease [Bifidobacterium longum subsp. infantis 157F]
 gi|322690861|ref|YP_004220431.1| exonuclease [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227213641|gb|EEI81490.1| ribonuclease D [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239515128|gb|EEQ54995.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|320455717|dbj|BAJ66339.1| putative exonuclease [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460222|dbj|BAJ70842.1| putative exonuclease [Bifidobacterium longum subsp. infantis 157F]
          Length = 433

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 22/117 (18%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D T + H+S  +         + +       T + AR  GL    L AV E         
Sbjct: 95  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHY------- 144

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                L     K  +      R  P      R +  Y   DV V  E+   +     
Sbjct: 145 -----LGITLAKEHSAADWSYRPLP------RDWRNYAALDVEVLIELETMMRRDLK 190


>gi|189182142|gb|ACD81847.1| LD13130p [Drosophila melanogaster]
          Length = 930

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 19/124 (15%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L +     + H +  +   L+   +L + I     T   A++      +  +  A  L 
Sbjct: 368 VLTDPKKLKILHGADLDIEWLQR--DLSLYIVNMFDTHRAAKALN----MARLSLAYLLK 421

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K         R  P      +   +Y + D      ++ R+    
Sbjct: 422 -------HYLDLDVDKSLQLADWRMRPLP------QQLVDYARQDTHFLIYVYGRMTNDL 468

Query: 180 SKEQ 183
            ++ 
Sbjct: 469 LQQH 472


>gi|166367637|ref|YP_001659910.1| 3'-5' exonuclease [Microcystis aeruginosa NIES-843]
 gi|166090010|dbj|BAG04718.1| 3'-5' exonuclease [Microcystis aeruginosa NIES-843]
          Length = 135

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 24/113 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAF---GFD--DHPVELWDCVHDPVMPQVL 57
            L++D E               ++   + L        D     V + D +  P +    
Sbjct: 22  ILWLDTE----------VADYDSKTPRLSLIQILADSTDLTGERVTILDVLDRPDLTDYF 71

Query: 58  K-EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA----RSNGL 105
             + +    +  V HN+ ++   L         + +  CTL LA         
Sbjct: 72  ITKIMLVDRIEKVFHNASYDCKFL----GGKSQVKKITCTLELAKKVPYYIAP 120


>gi|148979853|ref|ZP_01815731.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
 gi|145961545|gb|EDK26846.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
          Length = 255

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 41/168 (24%), Gaps = 44/168 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF---------------------GFDDH 40
             + +D ET     +   G   Y     ++                            + 
Sbjct: 22  RIVVLDTETTG---MNTEGGPHYMGH-RIVEIGAVEIINRKLTGRHFHVYIKPDRAIQEE 77

Query: 41  PV--------ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------N 85
            +         L D      + +   + +      +VAHN+ F+   +   F        
Sbjct: 78  AIGVHGITDEFLVDKPEYQDIHKEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLDPTIG 135

Query: 86  LDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                 +   TL +A+         L  + E   + +        L+ 
Sbjct: 136 KTDDYCKVTDTLDMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLD 183


>gi|145637904|ref|ZP_01793548.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
 gi|145268904|gb|EDK08863.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
          Length = 256

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALEN-TDVTIVA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +  +   VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ + L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|222824245|ref|YP_002575819.1| polysaccharide biosynthesis protein [Campylobacter lari RM2100]
 gi|222539467|gb|ACM64568.1| conserved hypothetical protein, putative polysaccharide
           biosynthesis protein [Campylobacter lari RM2100]
          Length = 259

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 12/138 (8%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICTLVLARSNGL 105
            ++  M +     ++     +V+ N   ++  +L       +I    ++     +     
Sbjct: 79  ENEKQMLEEFFNFIDKHQPRLVSFNGKSYDMPLLVIRALKYNINASAYLD---ASDKWNN 135

Query: 106 PSA------LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP-NHREAWRLFG 158
             +         + E+L    QK  +   L A       ++   +      ++       
Sbjct: 136 YKSKFIENKHCDLLESLGSFGQKGLKLDTLCAMAGLPGKYDVHGNEVLELFYQNKLEKIH 195

Query: 159 EYCKGDVTVTREIFKRLE 176
           EYC+ DV  T  +F + E
Sbjct: 196 EYCESDVLNTYMLFLKYE 213


>gi|315037938|ref|YP_004031506.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112]
 gi|312276071|gb|ADQ58711.1| DNA polymerase III alpha chain [Lactobacillus amylovorus GRL 1112]
          Length = 177

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI---------LFAFGFDDHPVELW---DC 47
           M  + +DFET +    + C +      +  ++            F   +  V      D 
Sbjct: 1   MNFIAMDFETANHYPESACSLALVMVRNTEIVDRFYTVINPQMPFDARNIQVHQITAEDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHN+ F+  V++     +N+  P +  I TL  ++ 
Sbjct: 61  KNAPTMAEVWPKIKGLYQPGMLVAAHNARFDTNVMRQSLARYNISEPHYLVIDTLTTSKR 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V +AL + 
Sbjct: 121 FEPELPNHKLDTVSDALDVE 140


>gi|261885284|ref|ZP_06009323.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 243

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 23/136 (16%)

Query: 6   IDFETRSPID---LTKCGICKYAEDVCVILF-AFGFDDH---------PVELWDCVHDP- 51
           +D ET   I+   + + G  K  + V +  F +F +  +          +   D    P 
Sbjct: 54  VDIETSGGINSGQIIEIGALKLLDGVEIGRFESFVYAPNVPENISELTGIYAADLAKAPS 113

Query: 52  --VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR--SNG 104
              + +  K  L ++    VAHN  F+   +          + ++R ICT+ LAR     
Sbjct: 114 LANVLEKFKLFLGDS--VFVAHNVKFDYDFISISLERLGFGMLLNRRICTIDLARRTIIS 171

Query: 105 LPSALKAVGEALKLSS 120
               L  + E L +S+
Sbjct: 172 QKYGLGTLKELLGISN 187


>gi|229472217|gb|ACQ72623.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 37/143 (25%), Gaps = 12/143 (8%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R        +  V AD +G+E R L           A   G            + A A++
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYL-------ARFDGGKFAKEVVEGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R  GK +   L Y GG       A            + K            +    
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGDSKLGLTA-----GAPKAQAVKKGKEIRSRIMADLDGFAA 120

Query: 485 MQENHPEHAIEDLFIGTACERVK 507
           +     E A   +  G     ++
Sbjct: 121 LNAAVQERAKSGVLKGLDGRPIR 143


>gi|229824922|ref|ZP_04450991.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
           49176]
 gi|229790925|gb|EEP27039.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
           49176]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 21/136 (15%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCVILFAF------GFDDHPVELWDCVHD--- 50
           +  D ET         + + G  K      +  F+          +   +L     D   
Sbjct: 436 VVFDIETTGFGPKNCRIIEIGAVKVMGGKVIDKFSAFVNPKQSIPEEITKLTSITQDMVI 495

Query: 51  -PVMPQVLKEALEN--TDVTIVAHNSYFERT-VLKACFNLDIPIH-RWICTLVLARSNGL 105
                 V+  A         +VAHN+ F+ + + +    L +        T+ ++R    
Sbjct: 496 NEPEIDVILPAFLEFCKGCFLVAHNASFDTSFIFENMKRLGLNEDFTIADTVTISRVLLP 555

Query: 106 P---SALKAVGEALKL 118
                 L  V E L +
Sbjct: 556 GLKNYKLDTVAERLGI 571


>gi|325280210|ref|YP_004252752.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324312019|gb|ADY32572.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 169

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 43/147 (29%), Gaps = 37/147 (25%)

Query: 2   ATLFIDFET-----RSPID-----------------LTKCGICKYAE-DVCVILFAFGFD 38
               IDFET      S                    L       Y+  +  +   +   D
Sbjct: 3   KFAAIDFETANWQQTSVCSVGIVVMNRGVIEDRFYSLIHPAPNFYSRRNTAIHGLS-RED 61

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWIC 95
                 +       + + +   +E   + +VAHNS F+   LK     + +D P + + C
Sbjct: 62  TEEALAFP-----TVWREIAPMIE--GIPLVAHNSMFDEGCLKAVFRLYEMDYPGYSFYC 114

Query: 96  TLVLARSNG---LPSALKAVGEALKLS 119
           T  L+R          L  V       
Sbjct: 115 TYRLSRKLFKGLENYQLHTVSSFCGYD 141


>gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1520

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 75/282 (26%), Gaps = 41/282 (14%)

Query: 3   TLFIDFETRSPIDLT----KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
            +  D ET     +     + G  K  +      F+   +      ++  +   +   + 
Sbjct: 483 YIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDRFSTFVNPKRPIPFEITNLTSITDEM- 541

Query: 59  EALENTDV--------------TIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
             +++  +               +VAHN+ F+   ++       L      ++ T+ LAR
Sbjct: 542 -VMDSPTIDVVLPQFLEFAGDGVLVAHNAGFDVGFIEQNCRSLGLS-DEFVYLDTVALAR 599

Query: 102 SNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLF 157
                 +   L  V +AL +S   +E     +            +       +    +  
Sbjct: 600 VLLPTLSKYKLNIVAKALNIS---LENHHRAVDDAEATAEIFVKFTEMLKKDQVGTLKEV 656

Query: 158 GEYCKGDVTV-----TREIFKRLEPLSSKEQELWYL---DQTINDRGYCVDVALAHTLNQ 209
             Y   +V       T  I    +    +      +     T   R   +  +L +   +
Sbjct: 657 NRYGDRNVNAIRKMPTHHIIILAKNDIGRYNLYQLISQSHMTYYARRPRIPKSLLNEHRE 716

Query: 210 IVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHL 251
            + +       EL          S          +    +  
Sbjct: 717 GLLIGSACEAGELYQ--AVHEKRSAQQIARLAEFYDYYEIQP 756


>gi|201067854|ref|ZP_03217745.1| hypothetical protein CJBH_L01c [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004548|gb|EDZ05021.1| hypothetical protein CJBH_L01c [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 213

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 26/117 (22%)

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-KACFNLDIPIHRWICT------ 96
            D  ++  M +     +EN +  +V+ N   F+  VL       ++    ++ T      
Sbjct: 91  IDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWN 150

Query: 97  -------------LVLARSNGLPS---ALKAVGEALKLSSQKMEEGKELIARFCKGE 137
                        L+ +   G       L  +   + L  +    G E++  F + E
Sbjct: 151 NYKTRFSELKHCDLLES--LGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKLFYENE 205


>gi|281204580|gb|EFA78775.1| 3'-5' exonuclease domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 717

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 48/200 (24%), Gaps = 26/200 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L +D E     D    G     +   V L           L        +P+ L   L 
Sbjct: 167 VLGLDAE--WAHDHLPSGAGSSQKSPRVALIQIST-ATDAYLLQMTQMSRIPKSLIAILT 223

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV-LARSNGLPSA-LKAVGEALKLSS 120
           +  +  V      + T +   FN+       +  LV LAR        L ++        
Sbjct: 224 DPRILKVGVAINQDATTIFKNFNILTK--GCVD-LVPLARLTNYAGNGLASLA------- 273

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                G  L            L   +             Y   D  ++  I+     +  
Sbjct: 274 YSTLNGCNL--------DKNHLVRCSHWELATLSAEQIHYAACDAWISLAIYT---QMLQ 322

Query: 181 KEQELWYLDQTINDRGYCVD 200
             +    L          +D
Sbjct: 323 TYRRNRALSCPDEPTPSSMD 342


>gi|270293052|ref|ZP_06199263.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus sp. M143]
 gi|270279031|gb|EFA24877.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus sp. M143]
          Length = 157

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 30/149 (20%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP------- 51
             + +D E   T S   + + GI    E+  +I   +  D +P E  D            
Sbjct: 7   RYVVVDLEATSTGSKAKIIQVGI-VVIENGEIIN-QYATDVNPHEPLDSHIKELTGLTDR 64

Query: 52  ---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVL 99
                     +   + E +++     VAHN  F+  +L         ++   R   T+ L
Sbjct: 65  RLAAAPEFSQVAGKIFELVKDG--IFVAHNVQFDANLLAEFLFFEGYELRTPRV-DTVEL 121

Query: 100 ARSNGL---PSALKAVGEALKLSSQKMEE 125
           A+          L  + + L +  +    
Sbjct: 122 AQVLYPQFEKYNLGILCQELGIELEHAHT 150


>gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846]
          Length = 255

 Score = 40.1 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 48/187 (25%), Gaps = 33/187 (17%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALENTDVTI-VA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +      VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKP 148
             TL +AR         L A+ + L + + K      L+                     
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185

Query: 149 NHREAWR 155
                  
Sbjct: 186 EESVESE 192


>gi|289679441|ref|ZP_06500331.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           syringae FF5]
 gi|330975085|gb|EGH75151.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 259

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 41/152 (26%), Gaps = 38/152 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            ++ +D ET     +      +  E  CV L           ++                
Sbjct: 9   RSIVLDTETTG---MPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHG 65

Query: 52  -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPI 90
                         +     E +      ++ HN+ F+   +   F L            
Sbjct: 66  ITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQH 123

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
              + TL++AR        +L A+ +   + +
Sbjct: 124 CSVLDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|262277819|ref|ZP_06055612.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114]
 gi|262224922|gb|EEY75381.1| DNA polymerase III, epsilon subunit [alpha proteobacterium HIMB114]
          Length = 223

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 66/225 (29%), Gaps = 39/225 (17%)

Query: 1   MATLFIDFETR---SPIDLTKCGICKYAED-------VCVIL---FAFGFDDHPVELWD- 46
           M  + +D ET    S  D      C   ED         V L          +       
Sbjct: 1   MKEVLLDTETTGLSSVNDKIIEIACIEIEDHIPTGEKFHVFLNPEMEISQGAYDTHGISK 60

Query: 47  --CVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKACFN----LDIPIHRWICTLV 98
               + P    V K+     +    ++ HN+ F+   L           I     + TL 
Sbjct: 61  EFLKNKPKFNDVAKDFTKFIDGKKLVI-HNAEFDLAFLNKELKEVGEKQISKDNIVDTLN 119

Query: 99  LARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA-------RFCKGETHECLYDRNKPN 149
           +AR     +  +L A+ +  K+ + + ++   L+             E  E  ++ +   
Sbjct: 120 IAREKFPGAQNSLDALCKRFKIDNSRRQKHSALLDCELLAKVYIELFEKKEPTFEFDLNA 179

Query: 150 HREAWRLFGEYCKGD-----VTVTREIFKRLEPLSSKEQELWYLD 189
             E+ +        D       +T E  +  +    KE     + 
Sbjct: 180 QDESIKNVK--NIKDRKQIIAQITNEEKRLHKEFLQKELPKSSML 222


>gi|188533676|ref|YP_001907473.1| ribonuclease D [Erwinia tasmaniensis Et1/99]
 gi|188028718|emb|CAO96580.1| Ribonuclease D [Erwinia tasmaniensis Et1/99]
          Length = 373

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 61/242 (25%), Gaps = 48/242 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV-- 56
           L +D E     T                   + L    +D   + L D +    +     
Sbjct: 25  LALDTEFVRTRTYY---------------PRLGLIQL-YDGETISLIDPL---PITDWTP 65

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
             E L++  V    H    +  V    F   +     I T +LA  +G P +        
Sbjct: 66  FSELLQDQKVIKYLHAGSEDLEVFCHEFG--VLPQPMIDTQILAAFSGRPLS-------- 115

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                    G   +     G   +    R     R       +Y   DV     I  +L 
Sbjct: 116 --------CGFATVVESFTGIALDKSESRTDWLARPLSEKQCQYAAADVFYLLPIAGKLV 167

Query: 177 PLSSKEQELWYLDQTINDRGYC----VDVALAHTLNQIVDVERTKLDQELESLTYGLVSS 232
             +    ++                 +D   A+         R +    L  +    + +
Sbjct: 168 AEAESAGQMAAALDECRLLCQRRTTVLDPQEAYREIANAWQLRPRQLAALRLMAAWRLET 227

Query: 233 SR 234
           +R
Sbjct: 228 AR 229


>gi|161078302|ref|NP_001097795.1| Rrp6 [Drosophila melanogaster]
 gi|158030263|gb|AAF55107.3| Rrp6 [Drosophila melanogaster]
          Length = 900

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 19/124 (15%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L +     + H +  +   L+   +L + I     T   A++      +  +  A  L 
Sbjct: 338 VLTDPKKLKILHGADLDIEWLQR--DLSLYIVNMFDTHRAAKALN----MARLSLAYLLK 391

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K         R  P      +   +Y + D      ++ R+    
Sbjct: 392 -------HYLDLDVDKSLQLADWRMRPLP------QQLVDYARQDTHFLIYVYGRMTNDL 438

Query: 180 SKEQ 183
            ++ 
Sbjct: 439 LQQH 442


>gi|309750446|gb|ADO80430.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2866]
          Length = 256

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALEN-TDVTIVA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +  +   VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ + L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|307717346|gb|ADN88726.1| DNA polymerase III [Listeria innocua]
 gi|307717356|gb|ADN88731.1| DNA polymerase III [Listeria innocua]
 gi|307717358|gb|ADN88732.1| DNA polymerase III [Listeria innocua]
 gi|307717360|gb|ADN88733.1| DNA polymerase III [Listeria innocua]
 gi|307717374|gb|ADN88740.1| DNA polymerase III [Listeria innocua]
 gi|307717388|gb|ADN88747.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP- 106
            V+ +  +E   + D  +VAHN+ F+   +   +    L+   +  + TL LAR      
Sbjct: 63  DVVLKQFREW--SGDDILVAHNASFDMGFINTAYEKVGLEKAKNAVVDTLELARFLYPHF 120

Query: 107 --SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               L  + +   +      +     E  A        +     +   H       GE
Sbjct: 121 KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEFHDSLNDYMGE 178


>gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
 gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379]
 gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 641

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NL 86
           D  PVE+     +          +   +   L++    +VAHN+ F+   L   F    +
Sbjct: 64  DPGPVEVHGLTAERLRGAPTFDQVAGRIGAMLQD--RVLVAHNAQFDYDFLAHEFARARM 121

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEE 125
            +P+ + +CTL L R    P     L  +     +  Q+  +
Sbjct: 122 WLPVSQRLCTLALNRQVDPPTDDMKLGTLATHYDVPQQRAHD 163


>gi|229488668|ref|ZP_04382534.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121]
 gi|229324172|gb|EEN89927.1| DNA polymerase III subunit epsilon [Rhodococcus erythropolis SK121]
          Length = 226

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 52/208 (25%), Gaps = 61/208 (29%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMP----- 54
               D ET      T            ++       D        W       +P     
Sbjct: 9   ICAFDLETTGRDPST----------ARIVSACVAVIDGSSVETRTWLLDPGVDIPAGASA 58

Query: 55  --------------------QVLKEALENT---DVTIVAHNSYFERTVLKACFNLDIP-- 89
                               + ++EAL N+   D  +VA N+ ++ TV+     L I   
Sbjct: 59  VHGISTEFAAQHGQDYSEGYEEIREALHNSWARDHAVVAFNASYDLTVM-HAEGLRIGKP 117

Query: 90  ---IHRWICTLVLARSNG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                  I   V+ R+          L AV E   +S +   E +              +
Sbjct: 118 AFVPGLVIDPYVIDRAMDTFRKGKRTLAAVCEHYGISLESAHEAEADAKAAAALARELAV 177

Query: 143 Y----------DRNKPNHREAWRLFGEY 160
                            H E  R F EY
Sbjct: 178 RFPDILGLDLMVDQADWHAERQRDFAEY 205


>gi|205357935|ref|ZP_02574364.2| ribonuclease D [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205328669|gb|EDZ15433.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|323130091|gb|ADX17521.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 390

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 52/200 (26%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 40  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 82

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T +T   H    +  V    F  ++P    I T +LA   G P +        + 
Sbjct: 83  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLSWGFASMVEEY 140

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +   +++ +       +  +                    EY   DV     I K+L   
Sbjct: 141 TGVALDKSESRTDWLARPLS----------------ERQCEYAAADVWYLLPIAKKLMIE 184

Query: 179 SSKEQELWYLDQTINDRGYC 198
           +     L             
Sbjct: 185 TEAAGWLPAALDECRLMQQR 204


>gi|300361735|ref|ZP_07057912.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
 gi|300354354|gb|EFJ70225.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
           gasseri JV-V03]
          Length = 937

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN---GLPSAL 109
            +++ LEN     VAHN  F+   L        L+    + I T+ LA+          L
Sbjct: 82  KIRKILEN--TIFVAHNVNFDLPFLNYELVNAGLEPLTGKAIDTVELAQIAFPTFPSYKL 139

Query: 110 KAVGEALKLSS 120
           + +   LK+  
Sbjct: 140 RDLTARLKIKH 150


>gi|93005683|ref|YP_580120.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
           K5]
 gi|92393361|gb|ABE74636.1| DNA polymerase III, epsilon subunit [Psychrobacter cryohalolentis
           K5]
          Length = 532

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 51/184 (27%), Gaps = 31/184 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK--- 58
             L +D ET            +  E   V +    F    + ++      +  +V++   
Sbjct: 307 RQLIMDTETTGLDPQKG---DRVIEVGIVEMIGRKFTGEKLHVYINPQRGMDEEVIRIHG 363

Query: 59  ---EALENT---------------DVTIVAHNSYFERTVL----KACFNLDI-PIHRWIC 95
                L +                   I+AHN+ F+   L          D     +   
Sbjct: 364 ISEAFLTDKPTFDQVAQSLYDFMDGAEIIAHNASFDMNFLNMEFAKVGMHDFAERVKVTD 423

Query: 96  TLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           +LV+A  +  G  + L A+   L +  Q       L+      E +  +         E 
Sbjct: 424 SLVMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLAMTGGQVTLGIED 483

Query: 154 WRLF 157
               
Sbjct: 484 DAQA 487


>gi|303256972|ref|ZP_07342986.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
 gi|302860463|gb|EFL83540.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
           1_1_47]
          Length = 260

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 78/261 (29%), Gaps = 41/261 (15%)

Query: 1   MATLFIDFETRSP-------------IDLTKCGI-----CKYAE-----DVCVILFAFGF 37
           M  + +D ET                ++L + G+      +Y +     +  VI      
Sbjct: 1   MREICLDTETTGMAAKEGDRIIEIGCVELGEHGLTDKNFHEYIDPERQMEAEVIRV-HKI 59

Query: 38  DDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPI------- 90
            +    L        +     E ++     ++ HN+ F+   L                 
Sbjct: 60  TNE--FLVGKPKFADIADKFIEFVQ--GARLIIHNAQFDIGFLNEELRKLGKPSMEEICG 115

Query: 91  -HRWICTLVLARSNGL--PSALKAVGEALKLS-SQKMEEGKELIARFCKGETHECLYDRN 146
               I ++ LA++      ++L A+ + L++  +++++EG   +           +  + 
Sbjct: 116 KDNIIDSMELAKAAFPQMHNSLDALCKRLEIDTTRRVKEGHGALLDAELLGQVYLVLKQQ 175

Query: 147 KPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYC--VDVALA 204
           +                   V   + +  E   S+ + +  + +          +D    
Sbjct: 176 QGILEIDAAPVSADVHDISDVELPVIRATEEDLSENERVLEMVRKAAKGPALYDLDEETF 235

Query: 205 HTLNQIVDVERTKLDQELESL 225
           +   +         + +L+ L
Sbjct: 236 NAKRKEEQDALDAKEAKLQDL 256


>gi|229172279|ref|ZP_04299843.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
 gi|228611267|gb|EEK68525.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
          Length = 934

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      ++              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRWAGYTEVHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|225561048|gb|EEH09329.1| 3'-5' exonuclease [Ajellomyces capsulatus G186AR]
          Length = 281

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 50/206 (24%), Gaps = 25/206 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAE-----DVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           L+ID E    I L++ G     +     +  V L                +       LK
Sbjct: 39  LYIDLE---GIKLSREGSISILQLLNHPEEHVYLIDIHLLGEEAFTTPGTNGKS----LK 91

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGL-PSALK----AVG 113
             LE      V  +   +   L   F + +         +   +    P + K     + 
Sbjct: 92  SILECPVTPKVFFDVRNDSNALFFHFGIRLQ--GVEDLQLEESACRPGPLSRKKFVSGLA 149

Query: 114 E----ALKL-SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
                 L++  S K    +                           +   +YC  DV+  
Sbjct: 150 RCIEIDLRISPSAKRVWKESKDKGMRLFAPECGGSHEVFNLRPIP-QSIIDYCVQDVSFM 208

Query: 169 REIFKRLEPLSSKEQELWYLDQTIND 194
             +        S E +      T   
Sbjct: 209 PHLRTLYWSKLSPEWKAEVDVATKER 234


>gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis]
          Length = 1437

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 42/143 (29%), Gaps = 33/143 (23%)

Query: 9   ETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE----------------LWDCVH-DP 51
           ET    D+   G+     D  + L A       +                 + +      
Sbjct: 419 ETYVVFDVETTGLSA-VYDTIIELAAVKVKGGEIIDKFEAFANPHRPLSATIIELTGITD 477

Query: 52  VMPQV---LKEALEN-----TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVL 99
            M Q    + + + +      D  +VAHN+ F+   L    K    ++   +  I TL L
Sbjct: 478 DMLQDAPDVVDVIRDFRVRIGDDILVAHNASFDMGFLNVAYKKLLEVEKAKNPVIDTLEL 537

Query: 100 ARSNGL---PSALKAVGEALKLS 119
            R          L  + +   + 
Sbjct: 538 GRFLYPEFKNHRLNTLCKKFDIE 560


>gi|332202187|gb|EGJ16256.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41317]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|330813374|ref|YP_004357613.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486469|gb|AEA80874.1| DNA polymerase III epsilon subunit [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 225

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 31/158 (19%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVIL-----------------FAFGFDDHPVE 43
           M  + +D ET            K  E  C+ L                        +   
Sbjct: 1   MLEIILDTETTGL----SFNTDKIIEIACIELENQIPTKNKFHVFINPNMDISDGAYQTH 56

Query: 44  LW--DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF-NLDIPI---HRWIC 95
               D + D  + + + +   N   D  +V HN+ F+   L      LD+      R + 
Sbjct: 57  GISRDFLRDKPVFKDIAKEFLNFIKDSKLVIHNADFDLAFLNKELQELDLEPLSKDRVVD 116

Query: 96  TLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIA 131
           TL LAR       ++L A+ +  K+++ + E+   L+ 
Sbjct: 117 TLFLARQKFPGSQASLDALCKRFKINTSEREKHSALVD 154


>gi|295398569|ref|ZP_06808601.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Aerococcus viridans ATCC 11563]
 gi|294973170|gb|EFG48965.1| possible DNA-directed DNA polymerase III epsilon subunit
           [Aerococcus viridans ATCC 11563]
          Length = 957

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 33/141 (23%)

Query: 10  TRSPIDLTKCGICKYAEDVCVILFAFGF-DDHPV---ELWDCVHDPVMPQVLKEA--LEN 63
           T + +DL   G   Y     +I     F  +  V      D   +  +P+ + +   + N
Sbjct: 7   TYAVLDLETTGS-TYDNGDRIIQIGVAFVQNGQVVDQFATDIFPNQEIPREITKLTGITN 65

Query: 64  TDVT--------------------IVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
             V                     IVAHN  F+   L             H  + T+ + 
Sbjct: 66  EQVKRAPKFEAVAEILWQKLSNTVIVAHNIGFDYKFLDKSFQAHGYPAMTHDRVDTVEMV 125

Query: 101 RSNGL---PSALKAVGEALKL 118
           R+         L     A  +
Sbjct: 126 RTLFPTADSYKLGEFCLAHGI 146


>gi|317047021|ref|YP_004114669.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b]
 gi|316948638|gb|ADU68113.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b]
          Length = 243

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 44/166 (26%), Gaps = 41/166 (24%)

Query: 2   ATLFIDFETRSPI----------------------DLTKCGICKYAE-----DVCVILFA 34
             + +D ET                           LT      Y +     D       
Sbjct: 7   RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHIYLKPDRLVDPEAFGV- 65

Query: 35  FGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFER-------TVLKACFNLD 87
            G  D    L D      +     + +      +V HN+ F+         +LK      
Sbjct: 66  HGIADE--FLADKPSFSDIADEFLDYIR--GAELVIHNASFDIGFMDYEFAMLKRDIGKT 121

Query: 88  IPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
               +   +L +AR        +L A+   L++ + K      L+ 
Sbjct: 122 DTFCQVTDSLAMARKMFPGKRNSLDALCSRLEIDNSKRTLHGALLD 167


>gi|229155207|ref|ZP_04283319.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           4342]
 gi|228628334|gb|EEK85049.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           4342]
          Length = 934

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      ++              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKRHELEHD 147


>gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP6-BS73]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP19-BS75]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|85712692|ref|ZP_01043738.1| Ribonuclease D [Idiomarina baltica OS145]
 gi|85693542|gb|EAQ31494.1| Ribonuclease D [Idiomarina baltica OS145]
          Length = 367

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 18/239 (7%)

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
           D    + D + D  +   L + + + DV  V H    +   L    +          T +
Sbjct: 39  DGETFIIDPLIDIDLTA-LWQLIADPDVVTVLHAGGEDIE-LFYHQSNGQKPRAVFDTQI 96

Query: 99  LARSNGLPSALK--AVGEAL--KLSSQKMEEGKELIARFCKGETHECLYDRNK---PNHR 151
            A   G+ S+L   ++ E L   ++  K +   + + R    E               + 
Sbjct: 97  AAGFIGMGSSLGYASLVEQLFDGVTLDKSQSRTDWLKRPLSEEQLTYAAADVSYLNSMYP 156

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
                  +    D+ V      ++   +             N   + ++      +  + 
Sbjct: 157 WLVEQVAQAHVADIVVEES-QLQVSKRTQVIPRHLLYLFVGN--AWQLNQKQLQVMKALA 213

Query: 212 DVERTKLDQE-----LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
                K   E            L+  +R + + K+ L+    L      + + + ++  
Sbjct: 214 AWRLDKAMSENMPLGFIFKDGVLLELARKMPQSKSDLYKIKDL-APMTRKYSGEAIIEQ 271


>gi|121591065|ref|ZP_01678378.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121729644|ref|ZP_01682121.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|147675462|ref|YP_001218570.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
 gi|153803140|ref|ZP_01957726.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|153819596|ref|ZP_01972263.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|229506903|ref|ZP_04396411.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229509276|ref|ZP_04398759.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229512692|ref|ZP_04402160.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229516220|ref|ZP_04405668.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229520981|ref|ZP_04410402.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229527205|ref|ZP_04416598.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229606416|ref|YP_002877064.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
 gi|254851434|ref|ZP_05240784.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|255744098|ref|ZP_05418052.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262161990|ref|ZP_06031007.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262167979|ref|ZP_06035678.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262192561|ref|ZP_06050711.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|298500931|ref|ZP_07010733.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|121547098|gb|EAX57233.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           2740-80]
 gi|121628578|gb|EAX61057.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
 gi|124121331|gb|EAY40074.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           MZO-3]
 gi|126509852|gb|EAZ72446.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
           8457]
 gi|146317345|gb|ABQ21884.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
 gi|229335213|gb|EEO00697.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
 gi|229341866|gb|EEO06867.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
 gi|229346646|gb|EEO11616.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
 gi|229350202|gb|EEO15154.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
 gi|229353591|gb|EEO18528.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
 gi|229356008|gb|EEO20927.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
 gi|229369071|gb|ACQ59494.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
 gi|254847139|gb|EET25553.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
 gi|255738363|gb|EET93754.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
 gi|262023512|gb|EEY42214.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
 gi|262028368|gb|EEY47024.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
 gi|262031606|gb|EEY50194.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
 gi|297540435|gb|EFH76494.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
 gi|327483170|gb|AEA77577.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
          Length = 209

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 52/186 (27%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELW----- 45
            + +D ET S       L      K  ++         V L A    D   V +      
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLDSGSVRIHRIRHQ 89

Query: 46  DCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP----------- 89
           D        + L + +E   +  +V ++  +++T+L    +      +P           
Sbjct: 90  DLHDGLSEKEALLQLIEFIGNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQIYH 149

Query: 90  -------IHRWICTLVLARSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCKGETHEC 141
                   + +              +L+A+   L L    K +  ++ IA          
Sbjct: 150 DKLEKHLPNAYFD-----------LSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLTK 198

Query: 142 LYDRNK 147
                 
Sbjct: 199 GDLPQF 204


>gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 336

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 69  VAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           VAHN+ F+ +++   +     + P+ + +CT+ L+++  LP     L+ +     +
Sbjct: 102 VAHNAVFDWSMIAREYARAGQEPPVRQRLCTIALSKALALPLPNHKLETLAAHFGV 157


>gi|306833904|ref|ZP_07467028.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
 gi|304423905|gb|EFM27047.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
           ATCC 700338]
          Length = 827

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + Q +   +E+     VAHN  F+  +L         ++   R   T+ LA+       
Sbjct: 75  QVAQEIFNLIED--CVFVAHNVKFDANLLAEQLFMEGYELRTPRV-DTVELAQVFYPTFE 131

Query: 107 -SALKAVGEALKLS 119
             +L  + + L L 
Sbjct: 132 KYSLGNLADVLALD 145


>gi|257867351|ref|ZP_05647004.1| exonuclease [Enterococcus casseliflavus EC30]
 gi|257873684|ref|ZP_05653337.1| exonuclease [Enterococcus casseliflavus EC10]
 gi|257877427|ref|ZP_05657080.1| exonuclease [Enterococcus casseliflavus EC20]
 gi|257801407|gb|EEV30337.1| exonuclease [Enterococcus casseliflavus EC30]
 gi|257807848|gb|EEV36670.1| exonuclease [Enterococcus casseliflavus EC10]
 gi|257811593|gb|EEV40413.1| exonuclease [Enterococcus casseliflavus EC20]
          Length = 180

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 50/147 (34%), Gaps = 35/147 (23%)

Query: 1   MATLFIDFET-----RSPIDLTKCGICKYAEDVCVILFAFG-FDDHPVELW--------- 45
           M  + +DFET      S   L    +    +D  ++   +          W         
Sbjct: 4   MNFIAMDFETANYQKHSACSLALVMV----QDSKIVGEYYTLIQPETEFFWKNIQIHGIR 59

Query: 46  --DCVHDPVMPQVLKEA-----LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWIC 95
             D    P  P V K+      L +    IVAHN+ F+  VL      + L  P +  +C
Sbjct: 60  PEDVQEAPKFPDVWKQIQQYYQLNS---LIVAHNAGFDTGVLAGCLDYYGLSQPNYLSLC 116

Query: 96  TLVLARSNGL---PSALKAVGEALKLS 119
           T+  +R          L  V E L++ 
Sbjct: 117 TVRTSRKLYPEFTNHKLNTVCEQLQIP 143


>gi|191637943|ref|YP_001987109.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           casei BL23]
 gi|190712245|emb|CAQ66251.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
           casei BL23]
 gi|327382013|gb|AEA53489.1| hypothetical protein LC2W_1155 [Lactobacillus casei LC2W]
 gi|327385171|gb|AEA56645.1| hypothetical protein LCBD_1147 [Lactobacillus casei BD-II]
          Length = 180

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETR-------SPIDLTKCGICKYAEDVCVIL---FAFGFDDHPVELW--DCV 48
           M  + +DFET          + L      K  +    ++     F   +  +     + V
Sbjct: 1   MDFIAMDFETANRKRASACSLALVVVQQNKVVDSFYTLINPQMQFDAQNIHIHGITPEMV 60

Query: 49  HDPVMPQVLKEALE---NTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            D      +   ++        + AHN+ F+ +V++     + +  P ++ I T+  +R 
Sbjct: 61  QDQPTFDRVWPHIQMFYTPGRIVTAHNAPFDVSVMRLTLDRYGIAAPRYQVIDTVKTSRQ 120

Query: 103 N---GLPSALKAVGEALKLS 119
                    L  V  AL + 
Sbjct: 121 FLPKLPNHRLDTVSAALHIP 140


>gi|118474671|ref|YP_892037.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118413897|gb|ABK82317.1| DNA polymerase III subunit epsilon [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 265

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 23/136 (16%)

Query: 6   IDFETRSPID---LTKCGICKYAEDVCVILF-AFGFDDH---------PVELWDCVHDP- 51
           +D ET   I+   + + G  K  + V +  F +F +  +          +   D    P 
Sbjct: 76  VDIETSGGINSGQIIEIGALKLLDGVEIGRFESFVYAPNVPENISELTGIYAADLAKAPS 135

Query: 52  --VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR--SNG 104
              + +  K  L ++    VAHN  F+   +          + ++R ICT+ LAR     
Sbjct: 136 LANVLEKFKLFLGDS--VFVAHNVKFDYDFISISLERLGFGMLLNRRICTIDLARRTIIS 193

Query: 105 LPSALKAVGEALKLSS 120
               L  + E L +S+
Sbjct: 194 QKYGLGTLKELLGISN 209


>gi|56420711|ref|YP_148029.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Geobacillus kaustophilus HTA426]
 gi|56380553|dbj|BAD76461.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 909

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 39/144 (27%), Gaps = 31/144 (21%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHD----- 50
             + ID ET          + + G+    ED  ++  FA  F+                 
Sbjct: 4   RFVIIDLETTGNGPKKGDRIIQLGM-AVVEDGLIVERFASFFNPEQP--IPLFIQQLTNI 60

Query: 51  -PVMPQVLKEALENTD---------VTIVAHNSYFERTVLKACF---NLDIPIHRWICTL 97
              M +       +              VAHN  F+   L+A              I T+
Sbjct: 61  NEEMVEG-APLFADKAGEIAALMHGAYFVAHNVDFDLPFLQAELERAGWPPFSGPTIDTV 119

Query: 98  VLARSNGL---PSALKAVGEALKL 118
            LAR          L  +   L L
Sbjct: 120 ELARIVLPTAESYKLGDLARQLGL 143


>gi|325288090|ref|YP_004263880.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324323544|gb|ADY31009.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 447

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 24/139 (17%)

Query: 1   MATLFIDFETRSPID-LTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHD------- 50
           M    ID ET    + +T+  I K+  D  V  F    +   V       +         
Sbjct: 1   MMYTIIDVETTGQTNKITEISIFKFDGDKVVDEFTSLVNPEDVIPYYITTLTGIDNAMVA 60

Query: 51  -----PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
                  + Q + +  E+     VAHN  F+  V++      + D    +  CT+ L+R 
Sbjct: 61  NAPTFAEIAQQVLDITED--TIFVAHNVNFDYNVIRNEFKAVDKDFRRKKL-CTVRLSRK 117

Query: 103 NGLPS---ALKAVGEALKL 118
                   +L  + + L +
Sbjct: 118 LLPGHNSYSLGKLCKDLDI 136


>gi|323489901|ref|ZP_08095123.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
 gi|323396408|gb|EGA89232.1| DNA polymerase III subunit epsilon [Planococcus donghaensis MPA1U2]
          Length = 202

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 38/149 (25%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAED--------------------VCVILFAFG- 36
             + +DFET         + + G  KY                         +       
Sbjct: 41  NYVVLDFETTGLRPGNDKIIQIGAVKYVNHEREETMYLMVNPQRSISNTITRITGITNKD 100

Query: 37  FDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-DIPIHRWIC 95
            ++ PV          +   L   + +  + I+AHN+ F+   L A  ++  IP +  I 
Sbjct: 101 VENAPVI-------EDIAHDLITFIGD--LPIIAHNAPFDMGFLYALEDITPIPEYTVID 151

Query: 96  TLVLAR---SNGLPSALKAVGEALKLSSQ 121
           T+ LAR   +      L  +   LKL   
Sbjct: 152 TVKLARKAITQTPNHKLTTLTAFLKLEHD 180


>gi|145631632|ref|ZP_01787397.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|144982766|gb|EDJ90295.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
          Length = 256

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 45/162 (27%), Gaps = 34/162 (20%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILF-----------------AFGFDDHPVE 43
             + +D ET     L          E   V L                  +   D   V 
Sbjct: 6   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRSVDPDAIKVH 65

Query: 44  LW------DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRW- 93
                   D      + Q   + +   ++ I  HN+ F+   +       +L++      
Sbjct: 66  GITDEMLADKPEFKEIAQDFLDYINGAELLI--HNAPFDVGFMDYEFRKLDLNVKTDDIC 123

Query: 94  --ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
               TL +AR         L A+ + L + + K      L+ 
Sbjct: 124 LVTDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|91092754|ref|XP_973448.1| PREDICTED: similar to GM14514p [Tribolium castaneum]
 gi|270014889|gb|EFA11337.1| hypothetical protein TcasGA2_TC010877 [Tribolium castaneum]
          Length = 237

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 41/150 (27%), Gaps = 18/150 (12%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-CFNLDI-- 88
           L     D     L        +P+ L   L +  V I   N   +   L       D+  
Sbjct: 92  LIQISPDLDTCYLIQISDLKKLPKGLSVLLAHPKVRITGVNIKNDIRKLSRDFAGFDVEK 151

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
            I   I + VLA                 L  Q+    + L+    K    +    R   
Sbjct: 152 NIENCIDSGVLANQI--------------LPFQQRWSMERLVTFLLKMTISKDNKVRMSK 197

Query: 149 NHREAW-RLFGEYCKGDVTVTREIFKRLEP 177
            H     +   +Y   D   +  ++  L+ 
Sbjct: 198 WHVSPLSKEQLDYAATDAYASLVLYNELKK 227


>gi|77360888|ref|YP_340463.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875799|emb|CAI87020.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 237

 Score = 40.1 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 13/95 (13%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFER-------TVLKACFNLDIPIHRWICTLV 98
              H   + Q   + +      +V HN+ F+        ++L   +       + + TL 
Sbjct: 70  PLFH--QIAQEFFDYI--KGAELVIHNAPFDIGHMDNEFSLLNQGYPKTATFCQVLDTLK 125

Query: 99  LARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           +AR         L A+     + + K      L+ 
Sbjct: 126 MARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLD 160


>gi|311110686|ref|ZP_07712083.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri MV-22]
 gi|311065840|gb|EFQ46180.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri MV-22]
          Length = 937

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN---GLPSAL 109
            +++ LEN     VAHN  F+   L        L+    + I T+ LA+          L
Sbjct: 82  KIRKILEN--TIFVAHNVNFDLPFLNYELVNAGLEPLTGKAIDTVELAQIAFPTFPSYKL 139

Query: 110 KAVGEALKLSS 120
           + +   LK+  
Sbjct: 140 RDLTARLKIKH 150


>gi|257483794|ref|ZP_05637835.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 178

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 41/152 (26%), Gaps = 38/152 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP---------- 51
            ++ +D ET     +      +  E  CV L           ++                
Sbjct: 9   RSIVLDTETTG---MPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHG 65

Query: 52  -------------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPI 90
                         +     E +      ++ HN+ F+   +   F L            
Sbjct: 66  ITNEFLVGKPRFAEVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQH 123

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
              + TL++AR        +L A+ +   + +
Sbjct: 124 CSILDTLMMARERHPGQRNSLDALCKRYGVDN 155


>gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585]
 gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 70585]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|169622755|ref|XP_001804786.1| hypothetical protein SNOG_14605 [Phaeosphaeria nodorum SN15]
 gi|160704846|gb|EAT78145.2| hypothetical protein SNOG_14605 [Phaeosphaeria nodorum SN15]
          Length = 668

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 44/148 (29%), Gaps = 9/148 (6%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL-VLARSNGLPSALKAVGEA 115
           LK  LE+  +  V  +   +   L A F + +     +  + +  RS      L  +   
Sbjct: 477 LKSVLESPTILKVFFDVRNDSDGLFAHFEIALKCVEHLQLMELATRSRKPRHHLVGLAWC 536

Query: 116 LKLSSQKMEEGKEL---IARFCKGETHECLYDRNKPNHREAWR-LFGEYCKGDVTVTREI 171
           ++ ++    E +     + +                      + +  EYC  DV    ++
Sbjct: 537 MEHNNGMSSEARRYAGSVKKQGIKLFCPGKGGSYAVFAERLLQPIVLEYCVQDVVHMPKL 596

Query: 172 FKRLEPLSSKEQELWYLDQTINDRGYCV 199
           +K          ++          G  +
Sbjct: 597 WKTYHARMDAFWKV----MVKEASGTRI 620


>gi|323343969|ref|ZP_08084196.1| exonuclease [Prevotella oralis ATCC 33269]
 gi|323095788|gb|EFZ38362.1| exonuclease [Prevotella oralis ATCC 33269]
          Length = 165

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 27/140 (19%)

Query: 5   FIDFETRSPIDLTKCGIC-KYAEDVCVI-LFAFGFDDHPVELW------------DCVHD 50
            IDFET +    + C +     ED  +   +       P                D    
Sbjct: 6   AIDFETANAARTSVCSVGMVIVEDGEITDSYYHLICPLPNYYTLWTTAVHGLTFEDTAGA 65

Query: 51  PVMPQVLKEALENTDV---TIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS-- 102
           P  P V  E      +    +VAHN  F+ + LK     + +  P +++ CTL+ AR   
Sbjct: 66  PTFPDVWAEI--APKIRYLPLVAHNKAFDESCLKAVFKAYGMQYPDYKFYCTLLGARRTF 123

Query: 103 ---NGLPSALKAVGEALKLS 119
                    L+ V +    S
Sbjct: 124 RKGMLPNYQLQTVAQYCGYS 143


>gi|288917119|ref|ZP_06411489.1| 3'-5' exonuclease [Frankia sp. EUN1f]
 gi|288351488|gb|EFC85695.1| 3'-5' exonuclease [Frankia sp. EUN1f]
          Length = 525

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 47/181 (25%), Gaps = 43/181 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILF----AFGFDDHPVELWDCVHDPVMPQVLKE 59
           +  D E        +    +Y++   ++      A      PV L D      +      
Sbjct: 81  IAFDAE--------RASGYRYSQRAYLVQIRRQGAGTILIDPVALPDLTSLQEVVGP--- 129

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKL 118
                    V H +  +   L     L +       T +  R  G     L A+ E    
Sbjct: 130 ------TEWVLHAASQDLPCLAE---LGLHPTSLFDTELAGRLLGYERVGLGAMVER--- 177

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                  G  L       E      D +     E W     Y   DV +  E+  RLE  
Sbjct: 178 -----VLGFAL-------EKGHSAADWSTRPLPEPW---LRYAALDVELLVELRDRLEAE 222

Query: 179 S 179
            
Sbjct: 223 L 223


>gi|229472565|gb|ACQ72797.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 38/143 (26%), Gaps = 12/143 (8%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R        +  V AD +G+E R L           A   G            + A A++
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYL-------ARFDGGKFAKEVVEGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R  GK +   L Y GG       A       +    + K            +    
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGDSKLGLTA-----GASKAQAVKKGKEIRSRIMANLDGFAA 120

Query: 485 MQENHPEHAIEDLFIGTACERVK 507
           +     E A   +  G     ++
Sbjct: 121 LNAAVQERAKSGVLKGLDGRPIR 143


>gi|229472543|gb|ACQ72786.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 38/143 (26%), Gaps = 12/143 (8%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R        +  V AD +G+E R L           A   G            + A A++
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYL-------ARFDGGKFAKEVVEGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R  GK +   L Y GG       A       +    + K            +    
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGDSKLGLTA-----GASKAQAVKKGKEIRSRIMADLDGFAA 120

Query: 485 MQENHPEHAIEDLFIGTACERVK 507
           +     E A   +  G     ++
Sbjct: 121 LNAAVQERAKSGVLKGLDGRPIR 143


>gi|171056929|ref|YP_001789278.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
 gi|170774374|gb|ACB32513.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
          Length = 731

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 34/139 (24%)

Query: 6   IDFETRSPID-----LTKCGICKYA-------EDVCVILFAFGFDDH--------PVELW 45
            D ET          + + G  + +       E    +      D          P+   
Sbjct: 544 FDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQL-----VDPQRPIPPAGIPIHGI 598

Query: 46  --DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLD--IPIHRWICTLVL 99
             D V        +  A      D  +VAHN+ F+   L+   +    +     + TL+L
Sbjct: 599 KPDMVAGQPTIDHVLPAFHAFAQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQPVLDTLLL 658

Query: 100 ARSNGL---PSALKAVGEA 115
           +           L+A+ E 
Sbjct: 659 SAVVHPNQESHRLEAIAER 677


>gi|167763751|ref|ZP_02435878.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC
           43183]
 gi|167697867|gb|EDS14446.1| hypothetical protein BACSTE_02131 [Bacteroides stercoris ATCC
           43183]
          Length = 163

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 25/137 (18%)

Query: 5   FIDFETRSPIDLTKCGICK-YAEDVCVILFAFG-FDDHPVELW------------DCVHD 50
            IDFET +    + C +      +  +    +      P                D    
Sbjct: 6   AIDFETANEQRTSVCSVGVVIVRNGEIADSYYSLIRPEPEYYTYWNTRVHGLTLADTSRS 65

Query: 51  PVMP---QVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
           PV P   Q +   +E   +T+VAHN  F+ + LK     + +D P + + CTL  +R   
Sbjct: 66  PVFPAVWQEIAPRIE--GLTLVAHNKAFDESCLKAVFRMYGMDYPDYDFRCTLQASRRAI 123

Query: 105 ---LPSALKAVGEALKL 118
                  L  V      
Sbjct: 124 KGLPDYQLHTVAAWCGY 140


>gi|120436251|ref|YP_861937.1| exonuclease family protein [Gramella forsetii KT0803]
 gi|117578401|emb|CAL66870.1| exonuclease family protein [Gramella forsetii KT0803]
          Length = 223

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 49/149 (32%), Gaps = 31/149 (20%)

Query: 1   MATLFIDFET----RSPIDLTKCGICKY-------AEDVCVILFAFGFDDHPVELWDCVH 49
           +  +  D ET         +   G  +        +++  V L    F+   V++   + 
Sbjct: 37  IRFIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFLEQKKFNPETVKIHGIIQ 96

Query: 50  DPVM-----PQVLKEALEN-TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLA 100
           +         + LK+ L    +  +VAH++ F+  ++        L    ++ + T +L 
Sbjct: 97  NEKFEKLSELEALKKFLSYIQNSVLVAHHAGFDMKMINKALSRNGLPKLKNKVLDTSIL- 155

Query: 101 R--------SNGLP--SALKAVGEALKLS 119
                            +L  + EA  + 
Sbjct: 156 YKKTRIATNFIDRDKIYSLDEIAEAYNID 184


>gi|17531757|ref|NP_496283.1| Cell-death-Related Nuclease family member (crn-3) [Caenorhabditis
           elegans]
 gi|3874231|emb|CAA90108.1| C. elegans protein C14A4.4a, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|31747255|gb|AAP57299.1| cell death-related nuclease 3 [Caenorhabditis elegans]
          Length = 876

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 44/179 (24%), Gaps = 32/179 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
               +D E           +  Y       L      D    + D         +L E  
Sbjct: 298 KEFAVDLE--------HHQMRSYLGLT--CLIQISTRDED-FIIDPFPIWDHVGMLNEPF 346

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSS 120
            N  +  V H S  +   L+  + + +       T V  +    P  +L  +   L+ + 
Sbjct: 347 ANPRILKVFHGSDSDVLWLQRDYGVHV--VNLFDTYVAMKKLKYPKFSLAYLT--LRFAD 402

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
             +++  +L     +                        Y + D       +  L    
Sbjct: 403 VVLDKQYQLADWRARPLR----------------NAMINYAREDTHYLLYSYDMLREQL 445


>gi|11466089|ref|NP_049544.1| DNA polymerase [Neurospora intermedia]
 gi|4877819|gb|AAD31446.1| DNA polymerase [Neurospora intermedia]
          Length = 1035

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 45/156 (28%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFG---FDDHP--VELWD--CVHDPVMP 54
             L  D ET                +    + A+    +D +               ++ 
Sbjct: 313 KILAFDIETFQVP----------TGNGDSTMIAYACGFYDGNKSLTYYISDFISQREMLL 362

Query: 55  QVLKEALENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWI----CTL------------ 97
             +K+ L+    T+  HN S F+   +      +  + + I      L            
Sbjct: 363 ACIKDMLKYDKHTVYCHNFSKFDINFIIKILVQEFVVEKIISKDLDILSIKISYKFEPKK 422

Query: 98  -----------VLARSNGLPSALKAVGEALKLSSQK 122
                      +      LP +L  + +   + ++K
Sbjct: 423 KGGKAERHTITIADSCRLLPGSLDKLAKDHNIITKK 458


>gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4]
 gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae
           TIGR4]
 gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae TIGR4]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|312128938|ref|YP_003996278.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
           byssophila DSM 17132]
 gi|311905484|gb|ADQ15925.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
           byssophila DSM 17132]
          Length = 303

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 25/151 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGIC-KYAEDVCVI-----LFAFGFDD-----------HPVE 43
           M  + IDFET +    + C I   + +D  +I     L    +D+            P  
Sbjct: 1   MEFVTIDFETATAQRDSPCEIGLTFVQDGQIIDTKSWLIKPMYDEFDYFNILIHGIRPEH 60

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
           + D      +   +K  +EN    ++AHN+ F+ +VL+     + L  P   + C+ + +
Sbjct: 61  VADKPEFNELWSEIKPLVENK--FLIAHNAGFDISVLRRTLEAYQLPFPTLNYSCSYIFS 118

Query: 101 RSN---GLPSALKAVGEALKLSSQKMEEGKE 128
           +          LK + +   ++ +    G +
Sbjct: 119 KKVWQGLPAYDLKTLCKVNNINLKHHRAGAD 149


>gi|307544648|ref|YP_003897127.1| ribonuclease D [Halomonas elongata DSM 2581]
 gi|307216672|emb|CBV41942.1| ribonuclease D [Halomonas elongata DSM 2581]
          Length = 395

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 73/288 (25%), Gaps = 56/288 (19%)

Query: 2   ATLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             + +D E     T  P+                 L  F        L D          
Sbjct: 45  DVIALDTEFFREKTFHPVP---------------ALVQFCV-GGAAYLVDPTVV-ACTDA 87

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  L       + H S  +  V      + +     + T +     G   A+       
Sbjct: 88  FRRLLG-EGPVKLLHASSEDLEVFLHWAGVTVSP--LVDTQIAQALLGEVPAMG------ 138

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     ++L+  +      +     N      +      Y   DV    E+++   
Sbjct: 139 ---------YQKLVEFWVGETLPKDETRSNWLERPLS-ETQTTYAALDVIYLLEVWQVQR 188

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236
               +   L +L     +    VD A     +      R +    L              
Sbjct: 189 DALERYGRLGWL---EEECRKLVDQAARDEQSDGQWYLRQRQLWRL------------SP 233

Query: 237 EKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRAS 284
            +++ +  L T    E       +  L+S+K L   A ++  NR   +
Sbjct: 234 RQIEAYRRLTTWREGEVRRRDLPRGWLASDKLLYGIAERMPENRYELA 281


>gi|282852211|ref|ZP_06261563.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 224-1]
 gi|282556630|gb|EFB62240.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 224-1]
          Length = 937

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN---GLPSAL 109
            +++ LEN     VAHN  F+   L        L+    + I T+ LA+          L
Sbjct: 82  KIRKILEN--TIFVAHNVNFDLPFLNYELVNAGLEPLTGKAIDTVELAQIAFPTFPSYKL 139

Query: 110 KAVGEALKLSS 120
           + +   LK+  
Sbjct: 140 RDLTARLKIKH 150


>gi|260769807|ref|ZP_05878740.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260615145|gb|EEX40331.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 205

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 45/149 (30%), Gaps = 38/149 (25%)

Query: 3   TLFIDFETRSP----------------IDLTKCGICKYAED--VCVILFAFGFDDHPVEL 44
            + +DFET                   +D    G  +   +    V  F    + +    
Sbjct: 8   VIVLDFETTGLSPNMGDRAIEIGAVKLVDGQVAGTFQQLMNPGFRVSGF---IEGYTGIT 64

Query: 45  -------WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-IHRWIC 95
                    C     +       + +    +VAHN+ F++  L      + +    ++ C
Sbjct: 65  NTMLRTALPC---EEVMAEFAHFIGD--TPLVAHNASFDKRFLDAEFDRIGVRYPGQFAC 119

Query: 96  TLVLARSNG---LPSALKAVGEALKLSSQ 121
           ++++AR          L  +    ++ + 
Sbjct: 120 SMLIARRLIQNAPTHKLGDLVRFKQIEND 148


>gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1873-00]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|154686487|ref|YP_001421648.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus amyloliquefaciens FZB42]
 gi|154352338|gb|ABS74417.1| DinG [Bacillus amyloliquefaciens FZB42]
          Length = 928

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 8/77 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL-- 105
             + + +   L       VAHN +F+   ++        ++P    + T+ L+R      
Sbjct: 73  EAVAEEIFHLL--DGAYFVAHNIHFDLGFVRHELSEAGYELPDCEVLDTVELSRIVFPGF 130

Query: 106 -PSALKAVGEALKLSSQ 121
               L  +   L +   
Sbjct: 131 EGYKLGELCAELNIVHD 147


>gi|163939458|ref|YP_001644342.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus weihenstephanensis KBAB4]
 gi|163861655|gb|ABY42714.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           weihenstephanensis KBAB4]
          Length = 934

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 37/145 (25%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMP 54
             + +D ET         D          ED  ++   F    +P             + 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEI-FSSFINPKREIPLFITELTGID 62

Query: 55  QVLK---EALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
           + L        +              VAHN +F+   L                I T+ L
Sbjct: 63  ENLVKQAPLFRDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|116629671|ref|YP_814843.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238854243|ref|ZP_04644587.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 202-4]
 gi|116095253|gb|ABJ60405.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238833054|gb|EEQ25347.1| putative DnaQ family exonuclease/DinG family helicase
           [Lactobacillus gasseri 202-4]
          Length = 937

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN---GLPSAL 109
            +++ LEN     VAHN  F+   L        L+    + I T+ LA+          L
Sbjct: 82  KIRKILEN--TIFVAHNVNFDLPFLNYELVNAGLEPLTGKAIDTVELAQIAFPTFPSYKL 139

Query: 110 KAVGEALKLSS 120
           + +   LK+  
Sbjct: 140 RDLTARLKIKH 150


>gi|318060238|ref|ZP_07978961.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
 gi|318076974|ref|ZP_07984306.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
          Length = 647

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NL 86
           D  PV++     +          +   L   L++    +VAHN+ F+   L   F    L
Sbjct: 60  DPGPVDVHGLTRERLSGAPAFGQIAGRLGAMLQD--RVLVAHNAQFDYDFLAHEFARARL 117

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKLS 119
            +P+ R +CTL L R    P     L ++     + 
Sbjct: 118 YLPVTRRLCTLALNRQVDPPTRDMKLGSLAAHYGVP 153


>gi|302519143|ref|ZP_07271485.1| DNA polymerase III [Streptomyces sp. SPB78]
 gi|302428038|gb|EFK99853.1| DNA polymerase III [Streptomyces sp. SPB78]
          Length = 664

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NL 86
           D  PV++     +          +   L   L++    +VAHN+ F+   L   F    L
Sbjct: 116 DPGPVDVHGLTRERLSGAPAFGQIAGRLGAMLQD--RVLVAHNAQFDYDFLAHEFARARL 173

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKLS 119
            +P+ R +CTL L R    P     L ++     + 
Sbjct: 174 YLPVTRRLCTLALNRQVDPPTRDMKLGSLAAHYGVP 209


>gi|290475404|ref|YP_003468292.1| RNase D, processes tRNA [Xenorhabdus bovienii SS-2004]
 gi|289174725|emb|CBJ81524.1| RNase D, processes tRNA precursor [Xenorhabdus bovienii SS-2004]
          Length = 385

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 51/187 (27%), Gaps = 46/187 (24%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
           T+ +D E     T                   + L    FD   + L D +      Q  
Sbjct: 34  TIALDTEFVRTRTYY---------------PQLGLIQL-FDGEQLSLIDPLDISE-WQPF 76

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGE 114
           +E L + DV    H    +  V    F         I T VLA   G P +      V +
Sbjct: 77  RELLTDRDVLKFIHAGSEDLEVFWNSF--QCLPTPMIDTQVLAAFIGHPMSCGFATLVAQ 134

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L +   K E   + +AR                          EY   DV     +   
Sbjct: 135 YLHVELDKSESRTDWLARPLS-------------------EKQCEYAAADVYYLLPLADI 175

Query: 175 LEPLSSK 181
           L   + +
Sbjct: 176 LMAATEQ 182


>gi|213584452|ref|ZP_03366278.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 216

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 12/64 (18%)

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 45  KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 98

Query: 112 VGEA 115
           +   
Sbjct: 99  MALY 102


>gi|150024146|ref|YP_001294972.1| hypothetical protein FP0032 [Flavobacterium psychrophilum JIP02/86]
 gi|149770687|emb|CAL42151.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 237

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 62/243 (25%), Gaps = 70/243 (28%)

Query: 2   ATLFIDFET-------RSPIDLTK---------------CGICKY------AEDVCVILF 33
             LF+D ET        S  D  K                G   Y      AE   +I  
Sbjct: 9   NILFLDIETVPEEENYNSLDDEMKQLWELKTQYQRKEEFSGQEFYDRAGIWAEFGKIICI 68

Query: 34  AFGF----DDHPVELWDCVHDPV--MPQVLKEALEN----TDVTIVAHNSY-FERTVLKA 82
           + G+     D               +       L N        +  HN+  F+   +  
Sbjct: 69  SVGYFTIKGDIRNFRVTSFFGEEKKILHDFINLLNNHFNQPQHLLCGHNAKEFDIPFIAR 128

Query: 83  CFNLD----------IPIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEG 126
              ++               W      TL L +        +LK + + L + S K    
Sbjct: 129 RMIINQITIPNKLNLFGKKPWEIPHLDTLELWKFGDYKHFTSLKLMCKVLGIPSPK---- 184

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF-KRLEPLSSKEQEL 185
                        +     +     +       YC+ D     +IF +        E+E+
Sbjct: 185 ----------GDIDGSQVGHVFYVEKDIDRIITYCEKDTIAVAQIFLRLRREDLLIEEEI 234

Query: 186 WYL 188
            ++
Sbjct: 235 IHV 237


>gi|113970494|ref|YP_734287.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4]
 gi|114047729|ref|YP_738279.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7]
 gi|113885178|gb|ABI39230.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4]
 gi|113889171|gb|ABI43222.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7]
          Length = 242

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 47/165 (28%), Gaps = 51/165 (30%)

Query: 1   MATLF-------IDFETRSPIDLTKCGICKYAEDVCVILFAF------------------ 35
           M  +        +D ET     + +     Y     +I                      
Sbjct: 1   MNIISNASRQVILDTETTG---MNQGSGAVYLGH-RIIEIGCVEVINRRLTGRYYHQYIN 56

Query: 36  ---GFDDHPVELWDCVHDP--------VMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
                D   + +     +          + Q   + +  +   IVAHN+ F+ + +   F
Sbjct: 57  PGQAIDPEAIAVHGITDERVANEPRFHQIAQEFIDFI--SGAEIVAHNANFDVSFMDHEF 114

Query: 85  NLDIPIHR-------WICTLVLARSNGLPS--ALKAVGEALKLSS 120
           +L  P+          + +L +A+         L A+ +   + +
Sbjct: 115 SLLQPLGPKTSDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDN 159


>gi|78777984|ref|YP_394299.1| exonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78498524|gb|ABB45064.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 247

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 25/145 (17%)

Query: 2   ATLFIDFETRS--PIDLTKCGICKYAEDVCV----------ILFAFGFDDHPVELWDCVH 49
             + +D ET      D           +  +          +  +FG  +      + + 
Sbjct: 4   RYIILDTETTGIGEEDRVIQLGFIVLGEREIEVQNEFFSTSVPISFGAMETHGITPEMLD 63

Query: 50  DPVMPQV------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
              + +       L E   + +  I+ HN+ F+  +L+        + R I TL +A+  
Sbjct: 64  GKPLCKDSTSYRRLNELNSDENYLII-HNAKFDIDMLQK-EGFKTQM-RVIDTLRVAKHL 120

Query: 104 GLPSALKAVGEALKLSSQKMEEGKE 128
                       L+    KME  KE
Sbjct: 121 LP----DEEAHRLQYFRYKMELYKE 141


>gi|68172041|ref|ZP_00545326.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998534|gb|EAM85303.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
           subunit [Ehrlichia chaffeensis str. Sapulpa]
          Length = 239

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 34/149 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-------------------PV 42
             + +D ET         G  +  E  CV L    F                        
Sbjct: 8   REVVLDTETTGLDP---DGGDRVIEIGCVELIDRVFTGKVFHEYINPERDIPYYATKIHG 64

Query: 43  ELWDCVHDP----VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR----WI 94
              D + D      +     E ++N    +V HN+ F+   +K   +     +      +
Sbjct: 65  ITIDMLKDKPKFSEIADKFLEFIDNG--ILVIHNAGFDIKFIKMELDRINKSYNSDFQVV 122

Query: 95  CTLVLARSNGLPSA--LKAVGEALKLSSQ 121
            TLVLAR      +  L A+     +S Q
Sbjct: 123 DTLVLARKKFPGVSSTLDALCRRFNISLQ 151


>gi|332519537|ref|ZP_08396004.1| polysaccharide biosynthesis protein [Lacinutrix algicola 5H-3-7-4]
 gi|332045385|gb|EGI81578.1| polysaccharide biosynthesis protein [Lacinutrix algicola 5H-3-7-4]
          Length = 237

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 61/228 (26%), Gaps = 65/228 (28%)

Query: 2   ATLFIDFET------RSPIDLTKCGI----------------------CKYAEDVCVILF 33
             LF+D ET       S +D TK  +                        +AE   +I  
Sbjct: 9   NILFLDIETVPETHNFSDLDKTKQALWEAKSRYQRKEEFTPEEFYDRAGIWAEFGKIICI 68

Query: 34  AFGF--DDHPVELWDCV----HDPVMPQVLKEALEN----TDVTIVAHNSY-FERTVLKA 82
           + G+  +     L+        +P + +  K  L +        + AHN   F+   +  
Sbjct: 69  SVGYFTNQGDTRLFRTTSFYGEEPTLLKAFKNLLISHFSQAKHLLCAHNGKEFDFPYIAR 128

Query: 83  CF---NLDIPIHRWICTLVLARSNGLPS-------ALKAVGEALKLSSQKMEEGKELIAR 132
                 +++P               L          L  + E  K    K     +L+  
Sbjct: 129 RMIINGIELP-----------YKLNLFGKKPWEVPHLDTL-ELWKFGDYKTYTSLKLMTN 176

Query: 133 F----CKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                   +  +                   YC+ D     +IF RL 
Sbjct: 177 VLGVPSPKDDIDGSEVYRVYYEENDIDRIITYCEKDTIAVAQIFLRLR 224


>gi|303326286|ref|ZP_07356729.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio sp.
            3_1_syn3]
 gi|302864202|gb|EFL87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio sp.
            3_1_syn3]
          Length = 1065

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 37/178 (20%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD--PVMPQVLKEA 60
             +  D ETR      + G    A     +  +       V       D        L   
Sbjct: 888  YVVFDVETRRSA--AEVGGWHKAGQ---MGVSV-----TVLYDSLADDYFSYSQDELPAL 937

Query: 61   LEN--TDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARS---NGLPSALKAVGE 114
             E      T+V  N   F+  VL      ++     +   +L R         +L  +G+
Sbjct: 938  FERLRAAETVVGFNSLRFDYAVLTPFAPFELRALPSLD--LLQRIKERLNYRISLDNLGQ 995

Query: 115  ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            A  L   K  +G + +  + +G                       YC+ DV +TR ++
Sbjct: 996  A-TLGEPKSADGLQALQWWKEGRC----------------EEIAAYCRKDVDLTRRLY 1036


>gi|282879110|ref|ZP_06287869.1| putative DNA polymerase III subunit alpha [Prevotella buccalis ATCC
           35310]
 gi|281298752|gb|EFA91162.1| putative DNA polymerase III subunit alpha [Prevotella buccalis ATCC
           35310]
          Length = 1235

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/93 (9%), Positives = 28/93 (30%), Gaps = 7/93 (7%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
             +   V++      + + +   +    ++L+R     +  ++      +  +K      
Sbjct: 735 ITYPIPVMERYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKKKAIVDA 791

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           +  +F +G       +         W  F  Y 
Sbjct: 792 MKPKFIEGGKKNGYDENVLDKIWADWEKFASYA 824


>gi|269138811|ref|YP_003295512.1| ribonuclease D [Edwardsiella tarda EIB202]
 gi|267984472|gb|ACY84301.1| ribonuclease D [Edwardsiella tarda EIB202]
 gi|304558803|gb|ADM41467.1| Ribonuclease D [Edwardsiella tarda FL6-60]
          Length = 371

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 56/216 (25%), Gaps = 50/216 (23%)

Query: 3   TLFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL 57
            + +D E     T                   + L    +D   + L D +      Q  
Sbjct: 25  YIALDTEFVRTRTYY---------------PQLGLVQL-YDGETLSLIDPLPISD-WQPF 67

Query: 58  KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK---AVGE 114
            + L N  V  + H    +  V     +        I T +LA   G P +      V  
Sbjct: 68  VDLLRNPQVVKLLHAGSEDLEVFLH--DFQTLPQPLIDTQILAAFTGRPLSSGFAAMVSA 125

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKR 174
            L++   K E   + +AR                          +Y   DV     +  +
Sbjct: 126 YLQVDLDKSESRTDWLARPLS-------------------ERQCDYAAADVYYLLPMAHK 166

Query: 175 LEPLSS-KEQELWYLD---QTINDRGYCVDVALAHT 206
           L             LD        R   VD  LA+ 
Sbjct: 167 LLAEVEACGWLPAALDECQALCRRRAETVDPTLAYR 202


>gi|213618910|ref|ZP_03372736.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 218

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 12/64 (18%)

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 47  KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 100

Query: 112 VGEA 115
           +   
Sbjct: 101 MALY 104


>gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54]
 gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae G54]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC3059-06]
 gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA41301]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|56413202|ref|YP_150277.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362128|ref|YP_002141765.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127459|gb|AAV76965.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093605|emb|CAR59069.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 232

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 12/64 (18%)

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 61  KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6]
 gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39]
 gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6]
 gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae D39]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 1432

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 13/123 (10%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
             +  + +  KE   +    +  HN  F+   +        L+      + TL ++R   
Sbjct: 478 DDEKDVIKKFKEFYGD--RPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEVSRLLH 535

Query: 105 LP---SALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                  L ++ +     L              +   +  +   +R    H        +
Sbjct: 536 PEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNER---FHEADLGKMND 592

Query: 160 YCK 162
           Y K
Sbjct: 593 YAK 595


>gi|120536881|ref|YP_956939.1| exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
 gi|120326715|gb|ABM21024.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
           VT8]
          Length = 291

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 24/117 (20%)

Query: 3   TLFIDFETRS---------PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD--CVHDP 51
            +++D ET            + LTK  +     ++  ++ +  F + P            
Sbjct: 47  VVWLDCETTGFQAGHDKIIELGLTKGYVDPITGELISLVASVSFYEDPGFPLPEIITQIT 106

Query: 52  VMPQV-----------LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
            +              ++E   +  + +VAHN+ F+R   ++ F + +   RW C++
Sbjct: 107 GITDEMVSGRTIDGVQVREWFTDDPI-VVAHNASFDRPFFESRFPM-LDQLRWACSM 161


>gi|332827669|gb|EGK00408.1| hypothetical protein HMPREF9455_03256 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 181

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 47/174 (27%), Gaps = 30/174 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           +  D ETR      + G+        + L     DD        ++   +P  L E L N
Sbjct: 30  IGFDTETR---PAFRKGVSH-----QIALMQLSTDD--TCFLFRLNIIGLPDCLAEILVN 79

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK- 122
             +  +  +   + + +       +P +      + +           +     +  +K 
Sbjct: 80  PAIKKIGLSLKDDFSAIHKRNAAFVPSNFIE---LQSFVKNYGIEDNGLQRIYGILFEKR 136

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           + +G+ L                              Y   D     +I+  L+
Sbjct: 137 ISKGQRLSNW----------------EADVLSDAQKMYAAIDAWACLKIYNELK 174


>gi|262342137|gb|ACY54579.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 42/152 (27%), Gaps = 9/152 (5%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELSLPSPNQVMVGADLAGIELRMLSHFL-------ARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  AL Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRKLVKTVTYALLYGAGDEKIGHSCDKLLSSKAAKKKGKEIRQAYIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQK 513
                +   E        G   + +  +  + 
Sbjct: 123 LLEAIKKASERGFIKALDGR--KIIVDSPHEA 152


>gi|229010951|ref|ZP_04168147.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM
           2048]
 gi|229132450|ref|ZP_04261304.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST196]
 gi|228651156|gb|EEL07137.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST196]
 gi|228750351|gb|EEM00181.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM
           2048]
          Length = 934

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 37/145 (25%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDP--VMP 54
             + +D ET         D          ED  ++   F    +P             + 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEI-FSSFINPKREIPLFITELTGID 62

Query: 55  QVLK---EALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
           + L        +              VAHN +F+   L                I T+ L
Sbjct: 63  ENLVKQAPLFRDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEVHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|242280286|ref|YP_002992415.1| hypothetical protein Desal_2824 [Desulfovibrio salexigens DSM 2638]
 gi|242123180|gb|ACS80876.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638]
          Length = 285

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 53/198 (26%), Gaps = 36/198 (18%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE-LWDCVHDPVMPQVLKEALEN 63
           +ID ET         G   ++ D  +   A  ++   ++      +     + + +    
Sbjct: 88  YIDIETT--------GTDAHSCD--ITTIAL-WNGKEIKTYVQGKNLYDFEEEIAKY--- 133

Query: 64  TDVTIVAHNSY-FERTVLKACFNLD-----IPIHRWICTLVLARSNGLPSALKAVGEALK 117
               IV+ N   F+   ++  F +      I +          RS G+   LK +     
Sbjct: 134 --PLIVSFNGKCFDVPFIEKYFGIKVDAAHIDLRFVF------RSLGITGGLKGIERYFG 185

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +      + + L   F     +E            A      Y   D      +  +   
Sbjct: 186 MDR---GDAEGLDGYFAVLLWNEYE----MNGDERALETLLAYNVLDSVNLENLMIKGYN 238

Query: 178 LSSKEQELWYLDQTINDR 195
           L  +      L       
Sbjct: 239 LHIERFSQHDLTPLAEKP 256


>gi|160895546|ref|YP_001561128.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
 gi|160361130|gb|ABX32743.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
          Length = 211

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 69  VAHNSYFERTVLKA--CFNLDIPIHRWICTLVLARSN---GLPSALKAVGEALKLS 119
           VAHN+ F+    ++      +     + CT++L+R         +L  +   L L 
Sbjct: 88  VAHNAAFDSKFWQSELALAGEAAPQPFACTVLLSRRIYPEAPSHSLSRLTAHLGLP 143


>gi|332366322|gb|EGJ44074.1| DNA polymerase III [Streptococcus sanguinis SK1059]
          Length = 267

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 66/265 (24%), Gaps = 46/265 (17%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFAFG-FDDH---PVELWDCVHDPVMPQVLKEA--LENT 64
            + +DL   G         +I       ++         D      + + +KE   L++ 
Sbjct: 8   YAVVDLEATGTGS---SAKIIQIGIVLIENGIITKTYETDVNPHEELDEHIKELTGLDDE 64

Query: 65  --------------------DVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                               D   VAHN  F+  +L         D+   R   T+ LA+
Sbjct: 65  RLGRAPEFSQVAAEVYELIQDAIFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQ 123

Query: 102 SNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                    +L  +   L +S +     + + +     F K +       +         
Sbjct: 124 VFYPTFDKYSLGNLCNLLDISLENAHTALADAQATAQLFLKIQDKIKSLPKALVEKMLTL 183

Query: 155 RLFGEY----CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQI 210
                Y       +V  T     + +        ++            +       L  +
Sbjct: 184 ADSIIYESRLAIEEVYQTMP--DQQDKELQSCYGIFLRRPQKLTSEKKLSQDFLTNLYLL 241

Query: 211 VDVERTKLDQELESLTYGLVSSSRC 235
              ER +  +    +   L      
Sbjct: 242 GLEERPEQLKFARFMEEALDQQEAS 266


>gi|332204293|gb|EGJ18358.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA47901]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|321311709|ref|YP_004203996.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis BSn5]
 gi|320017983|gb|ADV92969.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis BSn5]
          Length = 931

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL-- 105
             + + + + L       VAHN +F+   +K         +P    + T+ L+R      
Sbjct: 73  EAVAEEVFQLL--DGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEVLDTVELSRIVFPGF 130

Query: 106 -PSALKAVGEALKLSSQ 121
               L  + E L+L   
Sbjct: 131 EGYKLTELSEELQLRHD 147


>gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus
           pneumoniae 670-6B]
 gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae 670-6B]
 gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA17545]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|291484662|dbj|BAI85737.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. natto BEST195]
          Length = 931

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL-- 105
             + + + + L       VAHN +F+   +K         +P    + T+ L+R      
Sbjct: 73  EAVAEEVFQLL--DGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEVLDTVELSRIVFPGF 130

Query: 106 -PSALKAVGEALKLSSQ 121
               L  + E L+L   
Sbjct: 131 EGYKLTELSEELQLRHD 147


>gi|229845439|ref|ZP_04465569.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
 gi|229811635|gb|EEP47334.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
          Length = 256

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALEN-TDVTIVA--------------HNSYFERTVLKACF---NLDIPIHRW--- 93
               E L +  +   +A              HN+ F+   +   F   NL++        
Sbjct: 66  GITDEMLADKPEFKEIAQDFLDYINGAELLIHNAPFDVGFMDYEFCKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ + L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|225858612|ref|YP_002740122.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pneumoniae 70585]
 gi|225720171|gb|ACO16025.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae 70585]
          Length = 816

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVFLIQAPTGIGKTYGYLLPALSQS 288


>gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
 gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
          Length = 1432

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 13/123 (10%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
             +  + +  KE   +    +  HN  F+   +        L+      + TL ++R   
Sbjct: 478 DDEKDVIKKFKEFYGD--RPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEVSRLLH 535

Query: 105 LP---SALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                  L ++ +     L              +   +  +   +R    H        +
Sbjct: 536 PEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNER---FHEADLGKMND 592

Query: 160 YCK 162
           Y K
Sbjct: 593 YAK 595


>gi|328776161|ref|XP_391887.3| PREDICTED: probable exonuclease mut-7 homolog [Apis mellifera]
          Length = 954

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 50/210 (23%), Gaps = 32/210 (15%)

Query: 25  AEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEA----LENTDVTIVAHNSYFERTV 79
            +   + L      D+ V + D         ++  +      EN ++  +      + TV
Sbjct: 428 TKQTELALIQIATKDN-VYIIDVTTMGNKFTELWAKLALVLFENKNILKLGFGIAQDMTV 486

Query: 80  LKACF----NLDIPIHRWICTLVLARSNGLPSAL-KAVGEALKLSSQKMEEGKELIAR-- 132
           +++       + I    ++          L   L +         S      K L     
Sbjct: 487 IRSSLPALSKIKIYGQGYLD------IVNLWKKLVEDYKFVFPHESDDQFTKKNLSKLVE 540

Query: 133 FCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
            C G+        +    R        Y   D     EI+               L+   
Sbjct: 541 LCLGQKLNKSDQFSNWEQRPLRESQIIYAALDAYCLLEIYAT-------------LEIQC 587

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQEL 222
                  D A     +        K  + L
Sbjct: 588 EHLEIPFDDACLELQHIPFKSSSQKNIRRL 617


>gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
           haemofelis str. Langford 1]
          Length = 1393

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 30/147 (20%)

Query: 3   TLFIDFETRSPIDL----TKCGICKYAEDVCVILF--AFGFDDHPVELW-DCVH------ 49
               D ET     L    T+  I KY+    +  +   F   +   +   D  H      
Sbjct: 351 YCVFDIETTGLNPLFDEITEIAIYKYSNKRRIATYHSYFKISEPLKQHIKDLTHITDELL 410

Query: 50  ------DPVMPQVLKEALENTDVTIVAHN-SYFERTVL-KACFNLDIPI--HRWICTLVL 99
                   V+ + +K+      V  VAHN   F+   L      L +    +  I TL L
Sbjct: 411 AEKGQDLEVVLKEVKD-FTQGSVL-VAHNGIEFDFPFLNAKYIKLGMEPLSNPLIDTLRL 468

Query: 100 ARSNGL-----PSALKAVGEALKLSSQ 121
           +++          +L A+ + + +   
Sbjct: 469 SQTIFSEEKYKSHSLGAICKRVGVEYD 495


>gi|317048442|ref|YP_004116090.1| ribonuclease D [Pantoea sp. At-9b]
 gi|316950059|gb|ADU69534.1| ribonuclease D [Pantoea sp. At-9b]
          Length = 373

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 68/255 (26%), Gaps = 44/255 (17%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   + L D ++         
Sbjct: 25  VALDTEFVRTRTYY---------------PQLGLIQL-FDGEQLVLIDPLNISD-WAPFV 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T VT   H    +  V    F         + T +LA   G P +       +  
Sbjct: 68  ALLRDTQVTKFLHAGGEDLEVFLHRFG--CLPDPMVDTQILAAFAGQPLSWGFAAMVMHF 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           +  ++++ +       +  T                    EY   DV     +  ++  +
Sbjct: 126 NQIELDKSEARTDWLARPLT----------------ARQCEYAAADVAYLLPIAHQLVAQ 169

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSR 234
            E        L   D     R   +    A          R +    L+ L    ++ +R
Sbjct: 170 TEAAGHMAAALSECDILCQRRLDVLAPEDAWRDITNAWQLRPRQLAALQRLAAWRLNLAR 229

Query: 235 CLEKLKTWLFLETGL 249
             +    ++  E  L
Sbjct: 230 QKDMAVNFVIREENL 244


>gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Taiwan19F-14]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
 gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200]
 gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae MLV-016]
 gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
 gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP18-BS74]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
 gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
          Length = 910

 Score = 40.1 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104]
          Length = 1463

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +       D+P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|291517068|emb|CBK70684.1| Ribonuclease D [Bifidobacterium longum subsp. longum F8]
          Length = 398

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 22/117 (18%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D T + H+S  +         + +       T + AR  GL    L AV E         
Sbjct: 60  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHY------- 109

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                L     K  +      R  P      R +  Y   DV V  E+   +     
Sbjct: 110 -----LGITLAKEHSAADWSYRPLP------RDWRNYAALDVEVLIELETMMRRDLK 155


>gi|262276480|ref|ZP_06054289.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
 gi|262220288|gb|EEY71604.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
          Length = 247

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 40/164 (24%), Gaps = 36/164 (21%)

Query: 2   ATLFIDFETRSPID-----------------------LTKCGICKYAE-DVCVILFAFGF 37
             + +D ET                            LT      Y + D  +   A   
Sbjct: 7   RIIVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYIKPDREIDPEAISV 66

Query: 38  DDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIP 89
                E   D      +     E +      +VAHN+ F+   +   F            
Sbjct: 67  HGITDEFLRDKPSYADIHAEFLEFI--KGAELVAHNAPFDTGFMDHEFQMLDPSIGKTGD 124

Query: 90  IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             +   TL +A+         L  + E   + +        L+ 
Sbjct: 125 FCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLD 168


>gi|229084648|ref|ZP_04216916.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-44]
 gi|228698671|gb|EEL51388.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock3-44]
          Length = 930

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 24/144 (16%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVI-LFAFGFDDH---PVELWDCVHDPV 52
             + +D ET         D          ED  ++ +F+   +     P  + +      
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQVAAVVVEDGEILEIFSSFVNPEREIPPFITELTGIDE 63

Query: 53  MPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
                     +              VAHN +F+   L+             + I T+ LA
Sbjct: 64  DLVKQAPLFCDVAPMIVELLQGAYFVAHNVHFDWNFLREELKQAGYGEVNCQKIDTVELA 123

Query: 101 RSNGL---PSALKAVGEALKLSSQ 121
           +          L+ + +  +L   
Sbjct: 124 QILLPTADSYKLRDLAKQHELEHD 147


>gi|167837493|ref|ZP_02464376.1| possible DNA polymerase/helicase [Burkholderia thailandensis
           MSMB43]
          Length = 379

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                VAHN+ F+R  L+A F    +       +CT+ L+R+         L A+ E   
Sbjct: 91  DGKLFVAHNASFDRGFLRAEFERAGVAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 149

Query: 118 L 118
           L
Sbjct: 150 L 150


>gi|148992472|ref|ZP_01822167.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|149007688|ref|ZP_01831305.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|168489814|ref|ZP_02714013.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae SP195]
 gi|147760843|gb|EDK67814.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|147928789|gb|EDK79802.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|183571801|gb|EDT92329.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus pneumoniae SP195]
 gi|332077219|gb|EGI87681.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
           GA17545]
          Length = 816

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 81/299 (27%), Gaps = 53/299 (17%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQK----MEEGKELIARFCKGETHE 140
           +   R   T+ LA+         +L  +   L +  +     + + +             
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHTALSDAQATAELLLFLREKM 169

Query: 141 CLYDRNKPNHREAWRLFGEYCKGDV-TVTREIF-KRLEPLSSKEQELWYLDQTINDRGYC 198
               +              Y    V   T         P   + Q L++     +     
Sbjct: 170 TQLPKGLLERLLEMADALLYESYLVIEETYRNQSILSSPDLVQVQGLYFKKTAASLELRK 229

Query: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTET 257
           +    +  ++ +    R + +   + +   L      L +  T +    G  L  L+++
Sbjct: 230 LSQDFSKNISLLNLEVREEQESFAKEVGLLLKDEPVFLIQAPTGIGKTYGYLLPALSQS 288


>gi|73537451|ref|YP_297818.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
 gi|72120788|gb|AAZ62974.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
          Length = 530

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 30/141 (21%)

Query: 3   TLFIDFETR---------SPIDLTKCGICKYAEDVCVI--LFAF--------GFDDHPVE 43
            +F+D ET          + I + + G     E   ++    +         G  D  V+
Sbjct: 32  IVFVDLETTGADAQHDRITEIGVVEVGPEGIQEWDTLLDPGVSIPPFIQRLTGITDETVQ 91

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
                    + + L E L+      VAHN+ F+   LK       L       +CT+ L+
Sbjct: 92  GQPTFA--SIAEALAERLQ--GRLFVAHNARFDYGFLKNEFRRAGLTFR-ADVLCTVRLS 146

Query: 101 RSNGLP---SALKAVGEALKL 118
           RS         L A+     L
Sbjct: 147 RSLFPSAARHGLDAIIARFDL 167


>gi|16079297|ref|NP_390121.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310156|ref|ZP_03592003.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314478|ref|ZP_03596283.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221319400|ref|ZP_03600694.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323676|ref|ZP_03604970.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. subtilis str. SMY]
 gi|1706437|sp|P54394|DING_BACSU RecName: Full=Probable ATP-dependent helicase dinG homolog
 gi|1146243|gb|AAB38451.1| 22.4% identity with Escherichia coli DNA-damage inducible protein
           ...; putative [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2634658|emb|CAB14156.1| damage inducible ATP-dependent helicase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 931

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL-- 105
             + + + + L       VAHN +F+   +K         +P    + T+ L+R      
Sbjct: 73  EAVAEEVFQLL--DGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEVLDTVELSRIVFPGF 130

Query: 106 -PSALKAVGEALKLSSQ 121
               L  + E L+L   
Sbjct: 131 EGYKLTELSEELQLRHD 147


>gi|325568813|ref|ZP_08145106.1| exonuclease [Enterococcus casseliflavus ATCC 12755]
 gi|325157851|gb|EGC70007.1| exonuclease [Enterococcus casseliflavus ATCC 12755]
          Length = 177

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 50/147 (34%), Gaps = 35/147 (23%)

Query: 1   MATLFIDFET-----RSPIDLTKCGICKYAEDVCVILFAFG-FDDHPVELW--------- 45
           M  + +DFET      S   L    +    +D  ++   +          W         
Sbjct: 1   MNFIAMDFETANYQKHSACSLALVMV----QDSKIVGEYYTLIQPETEFFWKNIQIHGIR 56

Query: 46  --DCVHDPVMPQVLKEA-----LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWIC 95
             D    P  P V K+      L +    IVAHN+ F+  VL      + L  P +  +C
Sbjct: 57  PEDVQEAPKFPDVWKQIQQYYQLNS---LIVAHNAGFDTGVLAGCLDYYGLSQPNYLSLC 113

Query: 96  TLVLARSNGL---PSALKAVGEALKLS 119
           T+  +R          L  V E L++ 
Sbjct: 114 TVRTSRKLYPEFTNHKLNTVCEQLQIP 140


>gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1520

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 73/287 (25%), Gaps = 55/287 (19%)

Query: 3   TLFIDFETRSPIDLT----KCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
            +  D ET     +     + G  K  +      F+   +      ++  +   +   + 
Sbjct: 483 YIVFDIETTGFSSIKDAIIEVGAVKVTDGKITDRFSTFVNPKRPIPFEITNLTSITDEM- 541

Query: 59  EALENTDV--------------TIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
             +++  +               +VAHN+ F+   ++       L      ++ T+ LAR
Sbjct: 542 -VMDSPTIDVVLPQFLEFAGDGVLVAHNAGFDVGFIEQNCRSLGLS-DEFVYLDTVALAR 599

Query: 102 SNGLPSA---LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA-WRLF 157
                 +   L  V +AL +S   +E     +            +       +    +  
Sbjct: 600 VLLPTLSKYKLNIVAKALNIS---LENHHRAVDDAEATAEIFVKFTEMLKKDQVGTLKEV 656

Query: 158 GEYCKGDVTV-----TREIFKRLEPLSSKEQELWYL---DQTINDRGYCVDVALAHTLNQ 209
             Y   +V       T  I    +    +      +     T   R   +  +L +   +
Sbjct: 657 NRYGDRNVNAIRKMPTHHIIILAKNDIGRYNLYQLISQSHMTYYARRPRIPKSLLNEHRE 716

Query: 210 IV----------------DVERTKLDQELESLTYGLVSSSRCLEKLK 240
            +                +    +    L               +  
Sbjct: 717 GLLIGSACEAGELHQAVHEKRSAQQIARLAEFYDYYEIQPVGNNQFM 763


>gi|322385196|ref|ZP_08058843.1| DNA polymerase III [Streptococcus cristatus ATCC 51100]
 gi|321270820|gb|EFX53733.1| DNA polymerase III [Streptococcus cristatus ATCC 51100]
          Length = 814

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 29/159 (18%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         D+   R   T+ LA+       
Sbjct: 74  QVAREVYELIEDA--IFVAHNVKFDANLLAEALFWEGFDLLTPRV-DTVELAQVFYPTFD 130

Query: 107 -SALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDRNKPNH----------- 150
             AL  + E L++  +     + + +     F K +       +                
Sbjct: 131 KYALGNLCELLEIPLENAHTALADAQATAQLFLKIQKKMARLPKALLEKVLEFSDSLIYE 190

Query: 151 -----REAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQE 184
                 E ++   +Y   D+  T  IF +   +   E++
Sbjct: 191 SRLAIEEIFQSMPDYSGQDLQETHGIFLKRPKILPSEKK 229


>gi|258621021|ref|ZP_05716055.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
 gi|262166312|ref|ZP_06034049.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
 gi|258586409|gb|EEW11124.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
 gi|262026028|gb|EEY44696.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
          Length = 247

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 11/90 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTV----LKACFNLDIPIH---RWICTLVLARSN 103
             +     + +      +VAHN+ F+               +      +   TL +A+  
Sbjct: 85  KDVHDEFLDFI--KGAELVAHNAPFDVGFMDYEFAKLGGSVVKTTDFCKVTDTLAMAKRI 142

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  L  + E   + +        L+ 
Sbjct: 143 FPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|218282259|ref|ZP_03488558.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989]
 gi|218216727|gb|EEC90265.1| hypothetical protein EUBIFOR_01140 [Eubacterium biforme DSM 3989]
          Length = 525

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 48/178 (26%), Gaps = 26/178 (14%)

Query: 1   MA-TLFIDFETRSPID----LTKCGICKYAEDVCVILFA------FGFDDHPVELWDCVH 49
           M   +  D ET         + + G   +     V  ++               +    +
Sbjct: 49  MKRYVAFDVETTGLDSKKDRIIEVGAILFENGHTVETYSSLVNPEVKISKEATTINHITN 108

Query: 50  D--------PVMPQVLKEALEN---TDVTIVAHNSYFERTVLKACF---NLDIPIHRWIC 95
                     ++ + L + L +       I AHN+ F+ + L         D  I   + 
Sbjct: 109 GMVKKAPTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQIL-CLD 167

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
           TL L+R      +        K  + K ++    I+               K +    
Sbjct: 168 TLSLSRKIIPGLSNYKQTTVAKHFNIKNKQEHRAISDAEVCGEILWKLLSIKKDEEVK 225


>gi|148978262|ref|ZP_01814780.1| ribonuclease D [Vibrionales bacterium SWAT-3]
 gi|145962563|gb|EDK27840.1| ribonuclease D [Vibrionales bacterium SWAT-3]
          Length = 372

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 49/176 (27%), Gaps = 31/176 (17%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           FD   + L D    D + P      L++  V  V H    +  V +  F  D      + 
Sbjct: 47  FDGETLSLIDPIALDEMTP--FVGLLKDASVLKVLHACGEDLEVFQNAF--DCTPTPMVD 102

Query: 96  TLVLARSNGLPSALK---AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
           T ++A   G   +      V E + +   K              E+      R     + 
Sbjct: 103 TQIMAAFLGHGLSTGFAALVSEFVGVDLDK-------------SESRTDWLARPLSQKQL 149

Query: 153 AWRLFGEYCKGDVTVTREIFK----RLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                  Y   DV     ++     ++      E      D  +  R   V+   A
Sbjct: 150 D------YAAADVHYLMPMYNKLLEKVMEAGWWEAAQQESDLQVARRIRKVNPDTA 199


>gi|312132962|ref|YP_004000301.1| rnd [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773944|gb|ADQ03432.1| Rnd [Bifidobacterium longum subsp. longum BBMN68]
          Length = 408

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 22/117 (18%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D T + H+S  +         + +       T + AR  GL    L AV E         
Sbjct: 70  DATWILHDSLMDLPGFAE---IGLKPKALFDTEIAARLLGLHRFGLAAVTEHY------- 119

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
                L     K  +      R  P      R +  Y   DV V  E+   +     
Sbjct: 120 -----LGITLAKEHSAADWSYRPLP------RDWRNYAALDVEVLIELETMMRRDLK 165


>gi|307717344|gb|ADN88725.1| DNA polymerase III [Listeria innocua]
 gi|307717350|gb|ADN88728.1| DNA polymerase III [Listeria innocua]
 gi|307717352|gb|ADN88729.1| DNA polymerase III [Listeria innocua]
 gi|307717386|gb|ADN88746.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP- 106
            V+ +  +E   + D  +VAHN+ F+   +   +    L+   +  + TL LAR      
Sbjct: 63  DVVLKQFREW--SGDDILVAHNASFDMGFINTAYEKVGLEKANNAVVDTLELARFLYPHF 120

Query: 107 --SALKAVGEALKL---SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
               L  + +   +      +     E  A        +     +   H       GE
Sbjct: 121 KNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHDIEFHDSLNDYMGE 178


>gi|301167913|emb|CBW27498.1| putative DNA polymerase III PolC-type [Bacteriovorax marinus SJ]
          Length = 438

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 46/147 (31%), Gaps = 34/147 (23%)

Query: 6   IDFETRS----PIDLTKCGICKYAEDVCVI-----LFAF------------GFDDHPVEL 44
            D ET         + + G+ K  ++  VI     L                  +  V+ 
Sbjct: 16  FDLETTGGNHKSDKIIEIGLVK-IKNFEVIDQKNYLIQPEIKIPEFIQKLTSIKEEDVK- 73

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERT----VLKACFNLDIPIHRWICTLVLA 100
            D      +   + + + ++   +VAHN+ F+      VLK      +      CT ++ 
Sbjct: 74  -DSPVIEDVIDEILKFMGDS--ILVAHNTSFDVPFFNSVLKRLGKPQLKNKSL-CTNLMT 129

Query: 101 RSNGLPS---ALKAVGEALKLSSQKME 124
           +          L  + +   +  +K  
Sbjct: 130 KYLIPNLMNSNLNYMSKIFGIKHKKAH 156


>gi|254286229|ref|ZP_04961188.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
 gi|150423644|gb|EDN15586.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
           AM-19226]
          Length = 209

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 52/186 (27%), Gaps = 52/186 (27%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELW----- 45
            + +D ET S       L      K  ++         V L A    D   V +      
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLDSGSVRIHRIRHQ 89

Query: 46  DCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP----------- 89
           D        + L + +E   +  +V ++ ++++T+L    +      +P           
Sbjct: 90  DLHDGLSEKEALLQLIEFIGNRPLVGYHIHYDKTILDIACRKHLGFPLPNRLIEVSQIYH 149

Query: 90  -------IHRWICTLVLARSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCKGETHEC 141
                   + +              +L+A+   L L    K +  ++ IA          
Sbjct: 150 DKLEKHLPNAYFD-----------LSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLTK 198

Query: 142 LYDRNK 147
                 
Sbjct: 199 GDLPQF 204


>gi|297800892|ref|XP_002868330.1| hypothetical protein ARALYDRAFT_493524 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314166|gb|EFH44589.1| hypothetical protein ARALYDRAFT_493524 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 286

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 56/186 (30%), Gaps = 39/186 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH--DPVMPQVLKEA 60
            +  D E      L K G+        V       D++     D +H     +PQ L+  
Sbjct: 127 IVGFDIE--WRPSLRK-GVLP----GKVATVQICVDNN---YCDVMHIVHSGIPQRLQHL 176

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           +E++ +  V                +D    +          +    ++K V +   L++
Sbjct: 177 IEDSTLVKVG-------------IGIDGDSVKLF--------HDYGVSIKDVEDLSDLAN 215

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF------GEYCKGDVTVTREIFKR 174
           QK+   K+                +        W ++       +Y   D   +  +++ 
Sbjct: 216 QKIGGEKKWGLASLTETLVCKELLKPNRIRLGNWEVYPLSKQQLQYAATDAYASWHLYQV 275

Query: 175 LEPLSS 180
           L+ L  
Sbjct: 276 LKDLPD 281


>gi|296101380|ref|YP_003611526.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055839|gb|ADF60577.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 243

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 7   RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVVNRRLTGNNFHVYLKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQ-----VLKEALEN--TDVTIVAHNSYFERTVLKACFN---LDIPI 90
                  + D  +        + +   +      +V HN+ F+   +   F+    DIP 
Sbjct: 61  EAFGVHGIADEFLLDKPTFAEVADEFLDYIKGAELVIHNASFDIGFMDYEFSKLQRDIPK 120

Query: 91  HRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                    +L LAR        +L A+    ++ + K      L+ 
Sbjct: 121 TNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLD 167


>gi|211970517|emb|CAB04611.2| C. elegans predicted protein M01G12.2 [Caenorhabditis elegans]
          Length = 193

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHP-VELWDCVHDPVMPQVLK 58
           M  ++I+ ET   +   K G     + +  V+      D    V  +    +  + + LK
Sbjct: 32  MNFIWINLETNMELSCEKTGAQMAQDKEFKVLSIPLAGDAGKFVVFFPENQEETIEESLK 91

Query: 59  EA-------LENTDVTIVAHNSYFERTVLK 81
           +        L +  V    H   FE  V K
Sbjct: 92  KLNTRKFQRLIDDLVPKFIH---FELPVFK 118


>gi|17508347|ref|NP_493067.1| hypothetical protein M01G12.2 [Caenorhabditis elegans]
          Length = 202

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHP-VELWDCVHDPVMPQVLK 58
           M  ++I+ ET   +   K G     + +  V+      D    V  +    +  + + LK
Sbjct: 41  MNFIWINLETNMELSCEKTGAQMAQDKEFKVLSIPLAGDAGKFVVFFPENQEETIEESLK 100

Query: 59  EA-------LENTDVTIVAHNSYFERTVLK 81
           +        L +  V    H   FE  V K
Sbjct: 101 KLNTRKFQRLIDDLVPKFIH---FELPVFK 127


>gi|56963828|ref|YP_175559.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus clausii KSM-K16]
 gi|56910071|dbj|BAD64598.1| ATP-dependent DNA helicase DinG [Bacillus clausii KSM-K16]
          Length = 942

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 44/177 (24%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL--- 105
            +   L   +E + +  VAHN  F++  L+A      L +P      T+ L+R       
Sbjct: 73  EIATDLLAFMEGSSL--VAHNVPFDKGFLEAQLETEGLRLPKCCQFDTVELSRVLLPTQE 130

Query: 106 PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              L  +  +L +   +                                         D 
Sbjct: 131 SYKLSELSSSLDMDHDRPHR-----------------------------------ADSDA 155

Query: 166 TVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHT-LNQIVDVERTKLDQE 221
            +T E+F +L     +   +         +G   D  +    L Q   ++  + ++E
Sbjct: 156 EITAELFIKLLHKLERLPLVTLQSLEQVAKGLKSDWDVLTRPLIQKKWMKVDEDERE 212


>gi|319441121|ref|ZP_07990277.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM
           44702]
          Length = 228

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 27/148 (18%)

Query: 4   LFIDFETRSPIDLTKCGI--------CKYAEDVCVI---LF-----AFGFDDHPVELWDC 47
           L  D ET  P  LT   +          + +D+ ++          A        E    
Sbjct: 13  LSFDLETTGPDPLTARIVTSALITINGSHRDDLEILADPGIPIPEGATAVHGITTEY-AR 71

Query: 48  VHDPVMPQVLKEALE------NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
            H     +VL E +E      +   T++ +N+ ++ TVL+               LV+ +
Sbjct: 72  EHGRPHDEVLAETIERIRRGWSEGATLIIYNAAYDLTVLRTLEPTFTVDGPVFDPLVVDK 131

Query: 102 SNGL----PSALKAVGEALKLSSQKMEE 125
           +          L  V E   ++     E
Sbjct: 132 AKDRYRKGGRRLTQVCEHYGVTLDNAHE 159


>gi|315182194|gb|ADT89107.1| DNA polymerase III, alpha subunit [Vibrio furnissii NCTC 11218]
          Length = 184

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-IHRWICTLVLARSNG---L 105
             +       + +    +VAHN+ F++  L      + +    ++ C++++AR       
Sbjct: 54  EEVMAEFAHFIGD--TPLVAHNASFDKRFLDAEFDRIGVRYPGQFACSMLIARRLIQNAP 111

Query: 106 PSALKAVGEALKLSSQ 121
              L  +    ++ + 
Sbjct: 112 THKLGDLVRFKQIEND 127


>gi|292617367|ref|XP_697980.4| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Danio
           rerio]
          Length = 1361

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 50/180 (27%), Gaps = 35/180 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            D E   P   TK    K A             +    L+        P  LK  LE+ +
Sbjct: 69  FDLE--WPPSFTKGKTKKVAM------VQLCASEDKCYLFHISSMSGFPPGLKMFLEDEN 120

Query: 66  VTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVLARSNGLPSALKAVG-EALKLSS 120
           +  V         +     K   + DI +   +              L  +  E L+   
Sbjct: 121 IMKVG------VGIEGDKWKLLSDYDIKLKNIVD-------------LSDLANEKLRCCE 161

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLS 179
           +   +G  L+    K +  +    R       +       Y   D      I+++L+ + 
Sbjct: 162 KWSLDG--LVKHLLKKQLFKDKLVRCSHWDDFSLTEDQKRYAATDAYAGLLIYQKLQEMI 219


>gi|189461926|ref|ZP_03010711.1| hypothetical protein BACCOP_02593 [Bacteroides coprocola DSM 17136]
 gi|189431320|gb|EDV00305.1| hypothetical protein BACCOP_02593 [Bacteroides coprocola DSM 17136]
          Length = 1265

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGKKNGHDPKILEKIWADWEKFASYA 854


>gi|150025263|ref|YP_001296089.1| DNA polymerase III, epsilon subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771804|emb|CAL43278.1| Probable DNA polymerase III, epsilon subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 160

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 24/119 (20%)

Query: 1   MATLFIDFETR-----SPIDLTKCGICKYAEDVCVI---------LFAFGFDD-HPVELW 45
           M    IDFET        + +         ++   +          F        P +  
Sbjct: 1   MTFTAIDFETATAFHPCSVGIVTVQNGVIVDEFVTLIKPPNNQYSPFTIAVHGIRPRDTV 60

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPI----HRWICTL 97
           +      +   +K+ L+N  V  VAHN  F+R VL      + LD       +RW CTL
Sbjct: 61  NAKSFLEVYPEIKKRLQNKTV--VAHNESFDRNVLAKSMALYGLDYETLNISNRWECTL 117


>gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1436

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + +   E + ++   +VAHN+ F+   L        L+   +  I TL L R       
Sbjct: 488 EVLRDFHEWMGDS--ILVAHNASFDMGFLNMGLQKIGLEKAANGVIDTLELGRFLYPHMK 545

Query: 107 -SALKAVGEALKLS 119
              L  + +   + 
Sbjct: 546 NHRLNTLAKKFDIE 559


>gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 616

 Score = 40.1 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 24/138 (17%)

Query: 4   LFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDHPVE--LW---------DCV 48
           + +D ET         + + G  K      +  F+   D   +   L          D  
Sbjct: 35  VVVDLETTGLSAHEDRIIEIGAVKIHGGEEISRFSTFVDPGRLIPPLITNITGISDDDVN 94

Query: 49  HDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLAR-SN 103
             P   Q +K+ LE      +VAHN+ F+   L+A     ++  P    +CTLVLAR   
Sbjct: 95  GAPKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHITWPQPTHLCTLVLARTML 154

Query: 104 GL----PSALKAVGEALK 117
                    L ++     
Sbjct: 155 DRCAVGSFKLSSLARHFH 172


>gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1436

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + +   E + ++   +VAHN+ F+   L        L+   +  I TL L R       
Sbjct: 488 EVLRDFHEWMGDS--ILVAHNASFDMGFLNMGLQKIGLEKAANGVIDTLELGRFLYPHMK 545

Query: 107 -SALKAVGEALKLS 119
              L  + +   + 
Sbjct: 546 NHRLNTLAKKFDIE 559


>gi|289807092|ref|ZP_06537721.1| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 86

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 12/64 (18%)

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E+           VAHN+ F+R VL            WICT+ L+R          
Sbjct: 1   KPWIEDVIPLYYGSEWYVAHNASFDRRVLPEL------PGEWICTMKLSRRLWPGIKYSN 54

Query: 112 VGEA 115
           +   
Sbjct: 55  MALY 58


>gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
 gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
          Length = 255

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 48/187 (25%), Gaps = 33/187 (17%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALENT---------------DVTIVAHNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +                   ++ HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKP 148
             TL +AR         L A+ + L + + K      L+                     
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185

Query: 149 NHREAWR 155
                  
Sbjct: 186 EESVESE 192


>gi|297581761|ref|ZP_06943683.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534168|gb|EFH73007.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 209

 Score = 39.7 bits (91), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 52/186 (27%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELW----- 45
            + +D ET S       L      K  ++         V L A    D   V +      
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQSLDSGSVRIHRIRHQ 89

Query: 46  DCVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP----------- 89
           D        + L + +E   +  +V ++  +++T+L    +      +P           
Sbjct: 90  DLHDGLSEKEALIQLIEFIGNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQIYH 149

Query: 90  -------IHRWICTLVLARSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCKGETHEC 141
                   + +              +L+A+   L L    K +  ++ IA          
Sbjct: 150 DKLEKHLPNAYFD-----------LSLEAICRHLDLPLQDKHDALQDAIAAALVFVRLTK 198

Query: 142 LYDRNK 147
                 
Sbjct: 199 GDLPQF 204


>gi|284030730|ref|YP_003380661.1| DNA polymerase III subunit epsilon [Kribbella flavida DSM 17836]
 gi|283810023|gb|ADB31862.1| DNA polymerase III, epsilon subunit [Kribbella flavida DSM 17836]
          Length = 602

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 25/118 (21%)

Query: 6   IDFETRSPID----LTKCGICKYAEDVCVIL-FAFGFDDHPVELWD-------------C 47
           +D ET         +T+ G  K      ++  F    +  P E                 
Sbjct: 42  VDLETTGGAPGDSGITEIGAVKVRA-GELVGEFQSLVN--PAEPIPPFIAVLTGITDLMV 98

Query: 48  VHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
              P +  VL   LE      +VAHN+ F+   LK        D P    + T +LAR
Sbjct: 99  ASSPRIGSVLPAFLEFARGCVLVAHNAPFDVGFLKHDSQVHGYDWPDFPVVDTALLAR 156


>gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
 gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
          Length = 1432

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 13/123 (10%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
             +  + +  KE   +    +  HN  F+   +        L+      + TL ++R   
Sbjct: 478 DDEKDVIKKFKEFYGD--RPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEVSRLLH 535

Query: 105 LP---SALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                  L ++ +     L              +   +  +   +R    H        +
Sbjct: 536 PEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNER---FHEADLGKMND 592

Query: 160 YCK 162
           Y K
Sbjct: 593 YAK 595


>gi|328872413|gb|EGG20780.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 639

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 27  DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL 86
           +  V L    F D  V L  C+    +P+ L+  + +  +  V  +   + T +     +
Sbjct: 181 NDKVALIQIAFKD-EVFLIQCLRLKAIPKSLQLLMADHRILKVGVSIAQDATTIIKHLGI 239

Query: 87  DIPI 90
           ++  
Sbjct: 240 EVKG 243


>gi|311875216|emb|CBX44475.1| DNA polymerase A, part A [Erwinia phage phiEa1H]
 gi|311875337|emb|CBX45078.1| DNA polymerase A, part A [Erwinia phage phiEa100]
          Length = 621

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 2/126 (1%)

Query: 312 GASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIAS 371
            A+R                       +    +          +        +R   IAS
Sbjct: 498 TATRFYEIYKRWPSLPEDGEWRVPAIAISIGTSTFRMRHRVLVNIPSRGLYPLRDLFIAS 557

Query: 372 EGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAI 431
           +GKK++  D AG+E RVLA    +    +          T       +    + K    +
Sbjct: 558 KGKKVLGCDGAGLELRVLAHFMNDPEYSEVV--LHGDIHTHNQEKAGLPLRDMAKTFNTM 615

Query: 432 GKVMEL 437
           G    L
Sbjct: 616 GVYKSL 621


>gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33]
 gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33]
 gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 05ZYH33]
 gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type)
           [Streptococcus suis 98HAH33]
 gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1]
 gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLPS 107
             + +  ++  +++   +VAHN+ F+   +   +    L I     I T           
Sbjct: 491 EQVLREFQDFCQDS--VMVAHNATFDVGFMNVNYERAGLPIISQPVIDT------LEFAR 542

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            L    +   L       G  L          E          ++A   
Sbjct: 543 NLYPDFKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFLKDALEK 591


>gi|110678446|ref|YP_681453.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
 gi|109454562|gb|ABG30767.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
          Length = 465

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 64  TDVTIVAHNSYFERTVLKAC-----FNLDIPIHRWICTLVLARSN---GLPSALKAVGEA 115
               IVAHN+ F+   L+       +  D   +  + T+ L+           L A+ + 
Sbjct: 352 EHAVIVAHNAPFDMAFLRRQCRDQDYAFD---NPILDTVHLSAVVFGGSAEHTLDALCDR 408

Query: 116 LKL 118
           L +
Sbjct: 409 LNV 411


>gi|260589219|ref|ZP_05855132.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260540300|gb|EEX20869.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 1487

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCV-----------ILFAFGFDDHPVELWDCV 48
            +  D ET     L    I   A   E+  +           I   F  ++      + V
Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKVENGRITERFSEFVNPQIPIPFRIEELTSINDNMV 522

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIPIHR-WICTLVLARSNG 104
            D     V+    E       +VAHN+ F+ + + K   ++ I      + T+ +AR   
Sbjct: 523 ADAPTIDVILPKFEKFCEGCVMVAHNAEFDMSFIRKNYEDIGIEREDTVVDTVGMARFLL 582

Query: 105 LPSA---LKAVGEALKLSSQ 121
                  L  V +A+ +S +
Sbjct: 583 PQLNRFKLDTVAKAVGVSLE 602


>gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149]
 gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149]
          Length = 465

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 64  TDVTIVAHNSYFERTVLKA-CFNLDIPI-HRWICTLVLARSN---GLPSALKAVGEALKL 118
               IVAHN+ F+   L+  C N D    +  + T+ L+           L A+   L +
Sbjct: 352 EHAVIVAHNAPFDMAFLRRQCRNQDYAFDNPVLDTVHLSAVVFGGSAEHTLDALCNRLNV 411


>gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
 gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
          Length = 256

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALENTDVTI-VA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +      VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ + L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|119474667|ref|ZP_01615020.1| putative exonuclease [marine gamma proteobacterium HTCC2143]
 gi|119450870|gb|EAW32103.1| putative exonuclease [marine gamma proteobacterium HTCC2143]
          Length = 255

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 15/109 (13%)

Query: 6   IDFETRSPIDLTKCGICKYAE-DVCVIL-------FAFGFDDHPVELW---DCVHDPVMP 54
           +D ET    +  +       + +  ++L                V      D       P
Sbjct: 45  LDTETTGLSETAQLIEICILDFEGNILLNERVKPSVKVSKGAREVHGIKARDLKSCRSWP 104

Query: 55  QVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            V ++ +E      IVA+N+ F+R ++      FNL +   +W C ++ 
Sbjct: 105 DVYRDYVEVTAGKNIVAYNAKFDRRIITQTCRAFNLTMKKRKWYCLMLA 153


>gi|331082627|ref|ZP_08331750.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400246|gb|EGG79888.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 1487

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCV-----------ILFAFGFDDHPVELWDCV 48
            +  D ET     L    I   A   E+  +           I   F  ++      + V
Sbjct: 463 YVVFDIETTGFSALKDKIIEIGAVKVENGRITERFSEFVNPQIPIPFRIEELTSINDNMV 522

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIPIHR-WICTLVLARSNG 104
            D     V+    E       +VAHN+ F+ + + K   ++ I      + T+ +AR   
Sbjct: 523 ADAPTIDVILPKFEKFCEGCVMVAHNAEFDMSFIRKNYEDIGIEREDTVVDTVGMARFLL 582

Query: 105 LPSA---LKAVGEALKLSSQ 121
                  L  V +A+ +S +
Sbjct: 583 PQLNRFKLDTVAKAVGVSLE 602


>gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLPS 107
             + +  ++  +++   +VAHN+ F+   +   +    L I     I T           
Sbjct: 491 EQVLREFQDFCQDS--VMVAHNATFDVGFMNVNYERAGLPIISQPVIDT------LEFAR 542

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            L    +   L       G  L          E          ++A   
Sbjct: 543 NLYPDFKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFLKDALEK 591


>gi|222151350|ref|YP_002560506.1| hypothetical protein MCCL_1103 [Macrococcus caseolyticus JCSC5402]
 gi|222120475|dbj|BAH17810.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 850

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 25/117 (21%)

Query: 2   ATLFIDFETRS----PIDLTKCGICKYAEDVCVI----LFAFGFDDHPVEL--------- 44
               +D ET        ++ + GI    ++  +I     F    ++ P  +         
Sbjct: 4   KYAVVDIETTGNNLDSDEIIQVGI-AIVQNKKIIETYDTFIACNNEIPAFIQSLTKIDAF 62

Query: 45  --WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICT 96
              D  +   +   + + L       VAHN  F+   L+  F            I T
Sbjct: 63  DLVDAPNFSHVASHIIKLL--DGCVFVAHNVQFDLRFLQKYFSEAGHKFQPRYIIDT 117


>gi|218904738|ref|YP_002452572.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH820]
 gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
           AH820]
          Length = 315

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 26/161 (16%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AFGFDDHPV-------------E 43
             + IDFET         + +    KY     V  F ++     P+              
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRITSLTGITNYR 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           + D      +  +    L    +  VAHN+ F+   LK       L  P ++ I T+ LA
Sbjct: 69  VSDAPTIEEVLPLFLAFLHTNVI--VAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLA 126

Query: 101 --RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                +     L+ +   L +         + I      + 
Sbjct: 127 KKYMKHAPNYKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167


>gi|157375130|ref|YP_001473730.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157317504|gb|ABV36602.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 242

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 68  IVAHNSYFERTVLKACFNL-------DIPIHRWICTLVLARSNGLPS--ALKAVGEALKL 118
           +VAHN+ F+   +   F+L          I + + TL +A+         L A+ +   +
Sbjct: 98  VVAHNASFDVNFMDHEFSLLQPRGPKTADICQILDTLDIAKFLHPGQKNNLDALCKRYGI 157

Query: 119 SS 120
            +
Sbjct: 158 DN 159


>gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP23-BS72]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|330000265|ref|ZP_08303673.1| ribonuclease D [Klebsiella sp. MS 92-3]
 gi|328538027|gb|EGF64198.1| ribonuclease D [Klebsiella sp. MS 92-3]
          Length = 372

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 52/175 (29%), Gaps = 29/175 (16%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           FD   V L D    +   P  +++ L N DVT   H    +  V    FN  +     I 
Sbjct: 44  FDGQQVSLIDPLTINDWAP--MRDLLLNQDVTKYLHAGSEDLEVFLNAFN--LMPQPLID 99

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           T +LA   G P +        + S   +++ +       +  T                 
Sbjct: 100 TQILAAFCGRPMSWGFASMVEEYSGVALDKSESRTDWLARPLT----------------E 143

Query: 156 LFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALA 204
              EY   DV     I  +L              +   + Q    R   VD A A
Sbjct: 144 RQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDECRVMQQ--RRQEVVDPAEA 196


>gi|322366583|gb|ADW95369.1| Putative DNA/RNA polymorease [Staphylococcus cohnii]
          Length = 366

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY-----DIVLTVHDEIVCETPDTDEFNASMLYHLMTSN 654
           VQ V+  +    ++   KA        I++ +HD I+ E    DE  A  +  LM + 
Sbjct: 288 VQTVASYVFKHILLEVYKAQCEQMNFKIIMPIHDAIMIEC--EDEEIAQSVAQLMKNT 343


>gi|262041917|ref|ZP_06015100.1| ribonuclease D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259040723|gb|EEW41811.1| ribonuclease D [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 371

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 52/175 (29%), Gaps = 29/175 (16%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           FD   V L D    +   P  +++ L N DVT   H    +  V    FN  +     I 
Sbjct: 43  FDGQQVSLIDPLTINDWAP--MRDLLLNQDVTKYLHAGSEDLEVFLNAFN--LMPQPLID 98

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           T +LA   G P +        + S   +++ +       +  T                 
Sbjct: 99  TQILAAFCGRPMSWGFASMVEEYSGVALDKSESRTDWLARPLT----------------E 142

Query: 156 LFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALA 204
              EY   DV     I  +L              +   + Q    R   VD A A
Sbjct: 143 RQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDECRVMQQ--RRQEVVDPAEA 195


>gi|238895380|ref|YP_002920115.1| ribonuclease D [Klebsiella pneumoniae NTUH-K2044]
 gi|238547697|dbj|BAH64048.1| ribonuclease D [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 375

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 52/175 (29%), Gaps = 29/175 (16%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           FD   V L D    +   P  +++ L N DVT   H    +  V    FN  +     I 
Sbjct: 47  FDGQQVSLIDPLTINDWAP--MRDLLLNQDVTKYLHAGSEDLEVFLNAFN--LMPQPLID 102

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           T +LA   G P +        + S   +++ +       +  T                 
Sbjct: 103 TQILAAFCGRPMSWGFASMVEEYSGVALDKSESRTDWLARPLT----------------E 146

Query: 156 LFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALA 204
              EY   DV     I  +L              +   + Q    R   VD A A
Sbjct: 147 RQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDECRVMQQ--RRQEVVDPAEA 199


>gi|315638420|ref|ZP_07893597.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis JV21]
 gi|315481411|gb|EFU72038.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis JV21]
          Length = 260

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           D  +   + +  +  L ++    VAHN  F+   +          I ++R ICT+  A+ 
Sbjct: 131 DAPNLTRVLEAFRLFLNDS--VFVAHNVKFDYNFISKSLYECGFGILLNRKICTIDFAQC 188

Query: 103 NG--LPSALKAVGEALKLS 119
                   L A+ E LK+ 
Sbjct: 189 CIESSHYKLDALKEILKIE 207


>gi|283783999|ref|YP_003363864.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168]
 gi|282947453|emb|CBG87000.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168]
          Length = 243

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 7   RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVVNRRLTGNNFHIYLKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACF---NLDI 88
                  + D  +    K    +             +V HN+ F+   +   F   N DI
Sbjct: 61  EAFGVHGIADEFLLD--KPTFADVADEFLDYIRGAELVIHNASFDIGFMDYEFSKLNRDI 118

Query: 89  PIH----RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P      +   +L LAR        +L A+    ++ + K      L+ 
Sbjct: 119 PKTSSFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 167


>gi|262342185|gb|ACY54603.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 188

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           RS    S+    + +  +G+E R L           +   G  L         + A A++
Sbjct: 10  RSLFKPSDNHLQIGSGASGLELRCLGHYL-------SRYDGGKLAEEVVNGDIHTALAEI 62

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLV 466
               R  GK +   L Y GG       A  +  + +     +
Sbjct: 63  YGTDRKSGKGVTYCLIYGGGNHKLGLTAGASKSSASRKGQEI 104


>gi|238926233|ref|ZP_04657993.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
 gi|238885913|gb|EEQ49551.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
          Length = 179

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 30/119 (25%), Gaps = 28/119 (23%)

Query: 2   ATLFIDFETR---SPIDLTKC------------GICKYAEDVC------VILFAFGFDDH 40
             L  D ET    S  ++                +              +   +      
Sbjct: 3   KILVFDTETTGFRSDDEVLTLAVVNGTGETMVDSMYAPVRKAEWPDAERINRIS------ 56

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
           P  + DC       + L+      D  +V +N  F+  +L     + I        ++ 
Sbjct: 57  PAMVADCDPILTHREELECLFNAPDTLLVGYNIEFDIRLLAQ-SGIRITNANRHDVMLA 114


>gi|261340232|ref|ZP_05968090.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316]
 gi|288317749|gb|EFC56687.1| exodeoxyribonuclease 10 [Enterobacter cancerogenus ATCC 35316]
          Length = 220

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 32/124 (25%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCDLQGGIVEVASVDVVDGQIVNPMSHLVRPDR----PISPQAMAIHRITESMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E            VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEEVISHYHGSPWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|218134802|ref|ZP_03463606.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990187|gb|EEC56198.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC
           43243]
          Length = 237

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 27/146 (18%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVELW------------- 45
            + ID ET         + + G  K  E   V+   F    +P                 
Sbjct: 5   YVAIDLETTGTNPAEDRIIEVGAAK-VECGRVVSI-FSTFVNPQISISPRITSLTGITDE 62

Query: 46  DCVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
           D    PV+  ++ + +    DV I+ HN  F+ + +K       L+        TL +AR
Sbjct: 63  DVAGAPVIADIIADMIAYTKDVPILGHNVIFDYSFIKKAAANSKLEYAKEGI-DTLKIAR 121

Query: 102 SNG---LPSALKAVGEALKLSSQKME 124
                     L A+ E  K+   K  
Sbjct: 122 RILPDVPHKNLPALCEHFKIDPGKSH 147


>gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae CDC1087-00]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
           SP3-BS71]
 gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|89099885|ref|ZP_01172757.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
 gi|89085443|gb|EAR64572.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
          Length = 934

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 41/155 (26%), Gaps = 47/155 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWD-----CVHDPVMPQ- 55
             + +D ET    +  K G         +I FA        ++ D           +P  
Sbjct: 4   KYVVVDLETTG--NSAKKG-------DKIIQFA-AVVMEGGKIIDQYSSLLNPGKEIPAF 53

Query: 56  -----------------------VLKEALENTDVTIVAHNSYFERTVLKACF---NLDIP 89
                                   + E LE+     VAHN  F+ + L+           
Sbjct: 54  IEELTGLNDSMVSDAPVFAEIAPKVMELLEDA--YFVAHNVLFDLSFLQEELLDAGFPGF 111

Query: 90  IHRWICTLVLARSNGL---PSALKAVGEALKLSSQ 121
               I T+ LAR+         L  +     +   
Sbjct: 112 YGPVIDTVELARTVLPCSDSYKLSDLSAKEGIMHD 146


>gi|222823839|ref|YP_002575413.1| exonuclease [Campylobacter lari RM2100]
 gi|222539061|gb|ACM64162.1| conserved hypothetical protein, putative exonuclease [Campylobacter
           lari RM2100]
          Length = 459

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/290 (10%), Positives = 75/290 (25%), Gaps = 54/290 (18%)

Query: 2   ATLFIDFETRSPID----------LTKCGICKYAEDVC------------VILFAFGFDD 39
             + ID ET    +          + + G   + +               +         
Sbjct: 150 NVIVIDTETTGLREWEDEILQLSIIDETGYLIFDKYFKPKYKSTWIEAQKIHGI------ 203

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
            P  + +          L++   + DV  + +N  F+   +K   + +      I  + L
Sbjct: 204 KPAFVQNKASIDNYKIQLEKIFNDADVI-IGYNLDFDLKFIKRVIDFE-KPMFCIDVMKL 261

Query: 100 --ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
             +  +   S L  V      S +K+         F                H       
Sbjct: 262 FTSYYHEESSILPNV--DCGYSYKKLT--------FAAWHFKNPNALNPLNFHGAHG--- 308

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD---VALAHTLNQIVDVE 214
                 D   T  +  +LE         +   +        +D           + ++ +
Sbjct: 309 ---ALEDARATLYVLTKLEQTL-SSTPNYKNFRKRLGFNRIIDLFYQDFLKKEEEELNKQ 364

Query: 215 --RTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRV 262
             ++ +   ++ L   ++++     K+   ++           +    +V
Sbjct: 365 KLKSDIKDTVDKLYNEMIAALGSDVKISKIIYNSYATFYIKNQKKWVMKV 414


>gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20]
 gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20]
          Length = 918

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 38/152 (25%)

Query: 1   MATLF--IDFETR---SPIDLTKCGICKYAEDVCVI-LFAFGFDDH-------------- 40
           M  ++  +D ET    S ID      C   +D  +I  FA   +                
Sbjct: 1   MKPIYAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINRFAADINPDRRISKQIQRLTHIT 60

Query: 41  -----PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-DIPIHRW- 93
                    +       +   +   L  ++   VAHN YF+   L   F    +P     
Sbjct: 61  NQQVSKAPYF-----EDIADTIYNLL--SNTIFVAHNIYFDYHFLSNEFVRCGLPPLSIP 113

Query: 94  -ICTLVLARSNGLPSA---LKAVGEALKLSSQ 121
            I T+ L++      +   L  + +++     
Sbjct: 114 GIDTVELSQVFLPTESSFRLGDLADSIGFRHD 145


>gi|262392974|ref|YP_003284828.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
 gi|262336568|gb|ACY50363.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
          Length = 209

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 52/187 (27%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELWDCVHD 50
            + +D ET S       L      K  ++         V L A    D   V++    H 
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSQPFEVRLRAPQSLDSGSVKIHRIRHQ 89

Query: 51  PVMP-----QVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP----------- 89
            ++      + L E L+   +  +V ++  +++ +L           +P           
Sbjct: 90  DLVDGISEKEALLELLDFIGNRPLVGYHIRYDKKILDLACLRQLGFPLPNPLIEVSQIYH 149

Query: 90  -------IHRWICTLVLARSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCKGETHEC 141
                   + +              +L A+ + L+L    K +  ++ I+          
Sbjct: 150 DKLERHLPNAYFD-----------LSLDAICKHLELPIQDKHDALQDAISAALVFVRLTK 198

Query: 142 LYDRNKP 148
               N  
Sbjct: 199 GDLPNLT 205


>gi|312863243|ref|ZP_07723481.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           vestibularis F0396]
 gi|311100779|gb|EFQ58984.1| putative ATP-dependent DNA helicase DinG [Streptococcus
           vestibularis F0396]
          Length = 839

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         ++   R   T+ LA+       
Sbjct: 86  EIARTIFELIED--CIFVAHNVKFDANLLAEALFMEGFELRTPRV-DTVELAQVFYPTLE 142

Query: 107 -SALKAVGEALKLS 119
              L  + + L L 
Sbjct: 143 QYKLSYLSQVLNLD 156


>gi|229472353|gb|ACQ72691.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 39.7 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 38/143 (26%), Gaps = 12/143 (8%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R        +  V AD +G+E R L           A   G            + A A++
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYL-------ARFDGGKFAKEVVEGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R  GK +   L Y GG       A       +    + K            +    
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGDSKLGLTA-----GASKAQAVKKGKEIRSRIMANLDGFAE 120

Query: 485 MQENHPEHAIEDLFIGTACERVK 507
           +     E A   +  G     ++
Sbjct: 121 LNAAVQERAKSGVLKGLDGRPIR 143


>gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3]
 gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLPS 107
             + +  ++  +++   +VAHN+ F+   +   +    L I     I T           
Sbjct: 491 EQVLREFQDFCQDS--VMVAHNATFDVGFMNVNYERAGLPIISQPVIDT------LEFAR 542

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
            L    +   L       G  L          E          ++A   
Sbjct: 543 NLYPDFKRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFLKDALEK 591


>gi|154293980|ref|XP_001547434.1| hypothetical protein BC1G_14169 [Botryotinia fuckeliana B05.10]
 gi|150845141|gb|EDN20334.1| hypothetical protein BC1G_14169 [Botryotinia fuckeliana B05.10]
          Length = 773

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 40/126 (31%), Gaps = 16/126 (12%)

Query: 197 YCVDVALAHTLNQIVDV------------ERTKLDQ----ELESLTYGLVSSSRCLEKLK 240
             +D A    L +                E    ++    +LE +     S+ + LE+  
Sbjct: 18  QYIDYAKLKHLLREDSASEGDDRPWTADDETKFCEEILNVQLEKIASFQESTFKKLEQRA 77

Query: 241 TWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMNS 300
                +      +  ++    + S  KK+  +   + N+     + + +     ++ +  
Sbjct: 78  NTTGEKLKELAPEDGKSKDDLLTSKFKKIEEELDAIINDTKELKKYSSINYTAFLKIVKK 137

Query: 301 DGRLRG 306
             R RG
Sbjct: 138 HDRKRG 143


>gi|116327255|ref|YP_796975.1| exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116327295|ref|YP_797015.1| exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116332091|ref|YP_801809.1| exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119999|gb|ABJ78042.1| Exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116120039|gb|ABJ78082.1| Exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116125780|gb|ABJ77051.1| Exonuclease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 256

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 54/187 (28%), Gaps = 27/187 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L++D ET    +  +  +    +                      +       L    
Sbjct: 84  KLLYMDIETTGLENDDRTTVIGTFDGFEYHS-----------YIRGFNLDFFLDNL---- 128

Query: 62  ENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
            + D   V++N   F+   L+  FN+    +     +   RS G+   LK   + L +  
Sbjct: 129 -SQDQIFVSYNGIAFDIPFLEREFNVCFRNNHI-DIMFFLRSLGIKGGLKGCEKVLGI-- 184

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHRE-AWRLFGEYCKGDVTVTREIFKRLEPLS 179
                          G     L+ +        A ++  EY   D     ++F +   L 
Sbjct: 185 ------HRPEEVSITGVEAVNLWKQYVDYDDMNALKILEEYNWEDTVNLEKLFVKGYNLK 238

Query: 180 SKEQELW 186
            KE   +
Sbjct: 239 IKETPFY 245


>gi|91228447|ref|ZP_01262371.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|269966808|ref|ZP_06180881.1| putative DNA polymerase III, epsilon subunit [Vibrio alginolyticus
           40B]
 gi|91187982|gb|EAS74290.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
 gi|269828475|gb|EEZ82736.1| putative DNA polymerase III, epsilon subunit [Vibrio alginolyticus
           40B]
          Length = 209

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 52/187 (27%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELWDCVHD 50
            + +D ET S       L      K  ++         V L A    D   V++    H 
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSQPFEVRLRAPQSLDSGSVKIHRIRHQ 89

Query: 51  PVMP-----QVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP----------- 89
            ++      + L E L+   +  +V ++  +++ +L           +P           
Sbjct: 90  DLVDGISEKEALLELLDFIGNRPLVGYHIRYDKKILDLACLRQLGFPLPNPLIEVSQIYH 149

Query: 90  -------IHRWICTLVLARSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCKGETHEC 141
                   + +              +L A+ + L+L    K +  ++ I+          
Sbjct: 150 DKLERHLPNAYFD-----------LSLDAICKHLELPIQDKHDALQDAISAALVFVRLTK 198

Query: 142 LYDRNKP 148
               N  
Sbjct: 199 GDLPNLT 205


>gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1]
          Length = 929

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 44/142 (30%), Gaps = 30/142 (21%)

Query: 6   IDFETRSPIDLTKCGI---CKYAEDVCVILFA-FGFDDHPVELWD--------------- 46
           +D ET      +   I   C   +D  +   A F  D +P +                  
Sbjct: 16  VDLETTGTDPTSDRIIQFGCVLVQDGKI--IANFATDVNPNQAVPKQIQSLTGISNTQVQ 73

Query: 47  -CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
              +   +   +   LE+     VAHN +F+   L                I T+ LA+ 
Sbjct: 74  KAPYFEDVAHTIYHYLED--TIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                    L  + E+L LS +
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE 153


>gi|270284149|ref|ZP_05965623.2| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093]
 gi|270277190|gb|EFA23044.1| DNA polymerase III PolC-type [Bifidobacterium gallicum DSM 20093]
          Length = 214

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 22/100 (22%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVI-LFAFGFDDHPVELWD---------- 46
             + +D ET         +T+ G  +   D  +   F+   +                  
Sbjct: 17  DYISLDIETTGLAPRQETITEIGAVR-VRDGRIADRFSMLINPGK--HIPSRITALTGIS 73

Query: 47  --CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA 82
              V D  M      A  +      ++ HN  F+ + L  
Sbjct: 74  DAMVEDAPMIDEAIPAFVDWVDGDRLIGHNIRFDLSFLLK 113


>gi|195570818|ref|XP_002103401.1| GD20396 [Drosophila simulans]
 gi|194199328|gb|EDX12904.1| GD20396 [Drosophila simulans]
          Length = 896

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 19/124 (15%)

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
            L +     + H +  +   L+   +L + I     T   A++      +  +  A  L 
Sbjct: 338 VLTDPKKLKILHGADLDIEWLQR--DLSLYIVNMFDTHRAAKALN----MARLSLAYLLK 391

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                    L     K         R  P      +   +Y + D      +++R+    
Sbjct: 392 -------HYLDLDVDKSLQLADWRMRPLP------QQLVDYARQDTHFLIYVYERMTNDL 438

Query: 180 SKEQ 183
            ++Q
Sbjct: 439 LQQQ 442


>gi|152970868|ref|YP_001335977.1| ribonuclease D [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150955717|gb|ABR77747.1| RNase D, processes tRNA precursor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 371

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 52/175 (29%), Gaps = 29/175 (16%)

Query: 37  FDDHPVELWD-CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
           FD   V L D    +   P  +++ L N DVT   H    +  V    FN  +     I 
Sbjct: 43  FDGQQVSLIDPLTINDWAP--MRDLLLNQDVTKYLHAGSEDLEVFLNAFN--LMPQPLID 98

Query: 96  TLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
           T +LA   G P +        + S   +++ +       +  T                 
Sbjct: 99  TQILAAFCGRPMSWGFASMVEEYSGVALDKSESRTDWLARPLT----------------E 142

Query: 156 LFGEYCKGDVTVTREIFKRLEP------LSSKEQELWYLDQTINDRGYCVDVALA 204
              EY   DV     I  +L              +   + Q    R   VD A A
Sbjct: 143 RQCEYAAADVWYLLPIASQLMAETDRAGWLPAALDECRVMQQ--RRQEVVDPAEA 195


>gi|329667338|gb|AEB93286.1| ATP dependent helicase [Lactobacillus johnsonii DPC 6026]
          Length = 938

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN---GLPSAL 109
            +++ LEN     VAHN  F+   L        L+    + + T+ LA+          L
Sbjct: 82  KIRKILEN--TIFVAHNVNFDLPFLNYELVNAGLEPLTGKAVDTVELAQIAFPTFPSYKL 139

Query: 110 KAVGEALKLSS 120
           + +   L++  
Sbjct: 140 RDLTARLRIKH 150


>gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
 gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|268611881|ref|ZP_06145608.1| hypothetical protein RflaF_20541 [Ruminococcus flavefaciens FD-1]
          Length = 176

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 22/140 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA-EDVCVILFAFGFDDHPVEL---------WDCVHDPV 52
            +  D ET +  +     I   A +D  ++   F   D               D      
Sbjct: 4   YIVFDVETPNHANDRMSAIGITAVKDNKIVANYFSLVDPETHFDSFNTQLTGIDAEKVKD 63

Query: 53  MP--QVLKEALE---NTDVTIVAHNSYFERTVLK---ACFNLDIPI-HRWICT-LVLARS 102
            P    L + +E   +  +  VAHN+ F+ +VL+     + +       ++CT  +  R 
Sbjct: 64  APNFAELWKKIEPIMSKGIL-VAHNAVFDMSVLRSCLRSYGITWKPTAEYLCTVQIGRRV 122

Query: 103 N-GLPSALKAVGEALKLSSQ 121
              +   L  + +   ++  
Sbjct: 123 LPNMKHNLNVMCDHYGIALD 142


>gi|260596631|ref|YP_003209202.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
 gi|260215808|emb|CBA28259.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
          Length = 243

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 46/169 (27%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 7   RQIVLDTETTGMNQI-----GAHYEGHRIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 60

Query: 41  PVELWDCVHDP---------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL---DI 88
              +   + D           + +   + +      +V HN+ F+   +   F +    +
Sbjct: 61  EAFMVHGISDEFLMNKPVFGDVVEDFLDYIR--GAELVIHNASFDIGFMDYEFGMLKRGL 118

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 119 PKTETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLD 167


>gi|221069684|ref|ZP_03545789.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
 gi|220714707|gb|EED70075.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
          Length = 213

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 69  VAHNSYFERTVLKACFNLDIPIHR--WICTLVLARSN---GLPSALKAVGEALKLS 119
           VAHN+ F+    +A   L        + CT++L+R         +L  +   L L 
Sbjct: 88  VAHNASFDSKFWQAELALAGEAAPQLFACTVLLSRRIYPQAPSHSLGNLARYLHLP 143


>gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1407

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 27/135 (20%)

Query: 6   IDFETRSPIDLT---------KCGICKYAEDVCV-----ILFAFGF-----DDHPVELWD 46
            D ET    ++          K    K  +         I  +  F           + D
Sbjct: 397 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPIS-SFITKLTGIDESMVKD 455

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICTLVLARSNG 104
                 +     E   +  V  VAHN+ F+ + +K      ++ ++   + TL L+R   
Sbjct: 456 APSIEEILPKFLE-FASNSVL-VAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRHLY 513

Query: 105 ---LPSALKAVGEAL 116
                  L  + + L
Sbjct: 514 KDLKNYKLDTLADHL 528


>gi|268610447|ref|ZP_06144174.1| DNA polymerase III, alpha subunit [Ruminococcus flavefaciens FD-1]
          Length = 1441

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 14/98 (14%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFN 85
            +   +        ++ D  H+    ++  E   +  V  +AHN+ ++  ++       N
Sbjct: 475 ELTGIS------DADVKDAPHEAEALRMFMEFCGDKPVL-IAHNARYDTNMINQVCKRQN 527

Query: 86  LDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSS 120
           +D   + W+ TLV+ +S         L  V + LKL  
Sbjct: 528 IDFD-YTWVDTLVMCQSMLPEMGRHKLNLVAKQLKLGK 564


>gi|160876618|ref|YP_001555934.1| 3'-5' exonuclease [Shewanella baltica OS195]
 gi|160862140|gb|ABX50674.1| 3'-5' exonuclease [Shewanella baltica OS195]
 gi|315268815|gb|ADT95668.1| 3'-5' exonuclease [Shewanella baltica OS678]
          Length = 315

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 15/89 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKE 59
            L  D ETR           +  +   + L      D         H        Q LK 
Sbjct: 132 VLGFDTETR-------ASFERGVQHP-LSLIQIATAD--ACYL-FQHAILGEQFTQ-LKT 179

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDI 88
            LE+ ++  V      +   LK  + +++
Sbjct: 180 VLEDENILKVGVGLRSDAQALKRQWGINV 208


>gi|322516980|ref|ZP_08069870.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus vestibularis ATCC 49124]
 gi|322124463|gb|EFX95958.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus vestibularis ATCC 49124]
          Length = 828

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         ++   R   T+ LA+       
Sbjct: 75  EIARTIFELIED--CIFVAHNVKFDANLLAEALFMEGFELRTPRV-DTVELAQVFYPTLE 131

Query: 107 -SALKAVGEALKLS 119
              L  + + L L 
Sbjct: 132 QYKLSYLSQVLNLD 145


>gi|299531122|ref|ZP_07044534.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
 gi|298720825|gb|EFI61770.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
          Length = 213

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 69  VAHNSYFERTVLKACFNLDIPIHR--WICTLVLARSN---GLPSALKAVGEALKLS 119
           VAHN+ F+    +A   L        + CT++L+R         +L  +   L L 
Sbjct: 88  VAHNASFDSKFWQAELALAGEAAPQLFACTVLLSRRIYPQAPSHSLGNLARYLHLP 143


>gi|289423924|ref|ZP_06425717.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
 gi|289155701|gb|EFD04373.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
          Length = 188

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 25/135 (18%)

Query: 6   IDFETRSPID----LTKCGICKYAED---VCVILF-----AFGFDDHPVE------LWDC 47
           ID ET         + + G  +  ++              +   +   V       L D 
Sbjct: 30  IDIETSGLNPEKNEILELGAVRVRDNIVVAEYEQLIRPRKSISKEATKVNGLTKRMLIDE 89

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--GL 105
                +    K+ L      ++ HN  F+   ++    +    +++I TL LAR      
Sbjct: 90  PFVEDVIWDFKDFL--GKDVLIGHNIEFDLEFIRNQLPIR---NKYIDTLPLARKLLKIK 144

Query: 106 PSALKAVGEALKLSS 120
              L  +    K+  
Sbjct: 145 RHRLIDICHHYKIPE 159


>gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae GA04375]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|326803711|ref|YP_004321529.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651377|gb|AEA01560.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 890

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 45/192 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL----------WDCVHDP 51
               +D ET            KY     +I     F +   ++               + 
Sbjct: 4   KYAVVDLETTGT---------KYNRGDRIIQIGVVFLEGQKKIGEFKSNIQPLIPVPKNI 54

Query: 52  VMP-----QVLK--EALEN---------TDVTIVAHNSYFERTVLKACF-NLDIPIHRW- 93
                   + L+     E+          D   VAHN  F+   L A F  + +P     
Sbjct: 55  SDLTGIQTEDLRDAPLFEDIAPDLFQQLQDCVFVAHNINFDYKFLSASFEGVGLPALDLE 114

Query: 94  -ICTLVLARSNGL---PSALKAVGEALKLSSQK----MEEGKELIARFCKGETHECLYDR 145
            I T+ L R          L        ++  K    +E+ +       +          
Sbjct: 115 GIDTVELIRVLYPQAASYKLGDFSLDHGINLVKAHTAIEDARATAQLLVQVMDKVASLPE 174

Query: 146 NKPNHREAWRLF 157
           +     + W  F
Sbjct: 175 SLYKAMQPWLKF 186


>gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
 gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
          Length = 1464

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 33/114 (28%), Gaps = 10/114 (8%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARS 102
             +   + QVLKE  E   D  +VAHN+ F+   +        +P      I TL  AR+
Sbjct: 485 VKNAKPLVQVLKEFQEFCKDTVLVAHNASFDVGFMNANYERHGLPKITQPVIDTLEFARN 544

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                      +   L       G  L          E          +E    
Sbjct: 545 LYPEY------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 592


>gi|264676215|ref|YP_003276121.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
 gi|262206727|gb|ACY30825.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
          Length = 214

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 69  VAHNSYFERTVLKACFNLDIPIHR--WICTLVLARSN---GLPSALKAVGEALKLS 119
           VAHN+ F+    +A   L        + CT++L+R         +L  +   L L 
Sbjct: 89  VAHNASFDSKFWQAELALAGEAAPQLFACTVLLSRRIYPQAPSHSLGNLARYLHLP 144


>gi|218548595|ref|YP_002382386.1| exodeoxyribonuclease X [Escherichia fergusonii ATCC 35469]
 gi|218356136|emb|CAQ88753.1| DNA exonuclease X [Escherichia fergusonii ATCC 35469]
 gi|324113580|gb|EGC07555.1| exonuclease [Escherichia fergusonii B253]
 gi|325497013|gb|EGC94872.1| exodeoxyribonuclease X [Escherichia fergusonii ECD227]
          Length = 220

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           VAHN+ F+R VL            WICT+ L+R          +   
Sbjct: 78  VAHNASFDRRVL------PEMPGEWICTMKLSRHLWPGIKYSNMALY 118


>gi|51473650|ref|YP_067407.1| ribonuclease D [Rickettsia typhi str. Wilmington]
 gi|51459962|gb|AAU03925.1| ribonuclease D [Rickettsia typhi str. Wilmington]
          Length = 281

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 43/174 (24%), Gaps = 36/174 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            +L ID E             +Y     + +     + +   +    +      +  + L
Sbjct: 21  KSLSIDTE----------FERRYTYYAQLSIIQVKAEGYCGIIDTLSNLD--LNIFNKLL 68

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEAL-KL 118
            + ++T + H    +  +    F             + A   G    L    +   L  +
Sbjct: 69  IDNNITKIFHAPREDLEIFYNLF--KTLPSNIFDIQIAASICGFGQQLSYDNLCYKLIGI 126

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
           +  K  +    + R                           Y   DV    +I+
Sbjct: 127 TIDKTHQKSNWLKRPITS-------------------DMLNYAILDVEYLYKIY 161


>gi|42519127|ref|NP_965057.1| hypothetical protein LJ1202 [Lactobacillus johnsonii NCC 533]
 gi|41583414|gb|AAS09023.1| hypothetical protein LJ_1202 [Lactobacillus johnsonii NCC 533]
          Length = 938

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSN---GLPSAL 109
            +++ LEN     VAHN  F+   L        L+    + + T+ LA+          L
Sbjct: 82  KIRKILEN--TIFVAHNVNFDLPFLNYELVNAGLEPLTGKAVDTVELAQIAFPTFPSYKL 139

Query: 110 KAVGEALKLSS 120
           + +   L++  
Sbjct: 140 RDLTARLRIKH 150


>gi|239983036|ref|ZP_04705560.1| ribonuclease D [Streptomyces albus J1074]
 gi|291454868|ref|ZP_06594258.1| ribonuclease D [Streptomyces albus J1074]
 gi|291357817|gb|EFE84719.1| ribonuclease D [Streptomyces albus J1074]
          Length = 348

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 82/292 (28%), Gaps = 46/292 (15%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHN 72
           +D  +    +Y +   ++      +      +            L E +E+ +   + H 
Sbjct: 71  VDAERASGYRYGQRAYLV--QLRREGAGTALIDPVACPD--LSGLGEVVEDAE--WLLHA 124

Query: 73  SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIA 131
           +  +   L+   ++ +   R   T +  R  G     L A+ E   +    +E+G   + 
Sbjct: 125 ATQDLPCLR---DIGMVPQRLFDTELAGRLAGFARVGLGAMVE--NVLGYSLEKGHSAVD 179

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS----SKEQELWY 187
              +                E W     Y   DV +  ++   LE         +     
Sbjct: 180 WSTRPL-------------PEPW---LRYAALDVELLADLRDALEEELAGQGKLDWAHQE 223

Query: 188 LDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLET 247
            D   +              + +  V R +    +  L           +K+     +  
Sbjct: 224 FDAIASAPPAPPRKDPWRRTSGMHKVRRRRQLAVVREL-------WNARDKIAQRRDISP 276

Query: 248 GLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAMN 299
           G  L          ++ +   L      +   R  + R+   +L+    A++
Sbjct: 277 GKVLP------DAAIVEAALALPVDVQALGRLRGFSGRAGRRQLDQWQSAVD 322


>gi|218263130|ref|ZP_03477349.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222915|gb|EEC95565.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii
           DSM 18315]
          Length = 193

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 44/173 (25%), Gaps = 31/173 (17%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTD 65
            D ETR      K           + L     D         ++   +P+VL+E L N  
Sbjct: 50  FDTETR--PSFKKGQRY------KISLMQISTD--EACFLFRLNRIDIPKVLEEFLANEK 99

Query: 66  VTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEE 125
           V  +  +   +   ++     DI    ++   +                   +    +++
Sbjct: 100 VQKIGLSLRDDFGAMQKRK--DIQPANFLD--LQNYV-----------GQFGIEDASLQK 144

Query: 126 GKELIARFCKGETHECLYDRNKPN-HREAWRLFGEYCKGDVTVTREIFKRLEP 177
                              R              +Y   D     +I+ +L+ 
Sbjct: 145 I-----YAILFNKKISKGQRLSNWEADVLSDAQKKYAALDAWACLKIYNQLKQ 192


>gi|210612665|ref|ZP_03289413.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
 gi|210151467|gb|EEA82475.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
          Length = 234

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNG--- 104
             + +      E+    +V HN  F+   +K     +           TL +AR      
Sbjct: 71  KTVIRDFVNFCED--HILVGHNIMFDYKFMKKYASQYGESFEKKGI-DTLKIARKVHKDL 127

Query: 105 LPSALKAVGEALKL 118
              +L+A+ E  ++
Sbjct: 128 ESKSLEALCEHYQI 141


>gi|23009273|ref|ZP_00050383.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Magnetospirillum magnetotacticum MS-1]
          Length = 237

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 70  AHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKLSSQKM 123
           AHN+ F+  VL A    +   +P     CTL +AR          L  V   L +  +  
Sbjct: 25  AHNAGFDMGVLAASLTAWGEPVPEMMGHCTLQIARRIFPDPAGHGLAKVAARLGIRFEHH 84

Query: 124 EEGKE 128
           + G++
Sbjct: 85  DAGED 89


>gi|269215783|ref|ZP_06159637.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
 gi|269130733|gb|EEZ61809.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
          Length = 291

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 41/150 (27%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMPQVLKE 59
            + +D ET                D  + L A                     +   + +
Sbjct: 128 YVVVDIETTGLNPNK---------DEIIELAAIRVRGGRETDAFQCLVRCGGELSDAIAK 178

Query: 60  --------------ALEN---------TDVTIVAHNSYFERTVLKAC---FNLDIPIHRW 93
                          LEN         +D  IVAHN+ F+   +++     + D   + +
Sbjct: 179 LTGLSHSRLMAEGLILENALMNFLEFVSDDLIVAHNAEFDIGFIQSACEELDWDDFDNDY 238

Query: 94  ICTLVLARS---NGLPSALKAVGEALKLSS 120
           + TL LAR          L ++ E L L +
Sbjct: 239 LDTLALARKKLPQISDHRLSSLAERLHLEN 268


>gi|461962|sp|P33537|DPOM_NEUCR RecName: Full=Probable DNA polymerase
 gi|578156|emb|CAA39046.1| putative DNA polymerase [Neurospora crassa]
          Length = 1021

 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 41/156 (26%), Gaps = 45/156 (28%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFG---FDDHP--VELWD--CVHDPVMP 54
             L  D ET                +    + A+    +D                 ++ 
Sbjct: 313 KILAFDIETFQVP----------TGNGDSTMIAYACGFYDGKKSLTYYISDFISQREMLL 362

Query: 55  QVLKEALENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWI----CTL------------ 97
             +K+ L+    T+  HN S F+   +      +  + + I      L            
Sbjct: 363 ACIKDMLKYDKHTVYCHNFSKFDINFIIKILVQEFVVEKIISKDLDILSIKISYKFEPKK 422

Query: 98  -----------VLARSNGLPSALKAVGEALKLSSQK 122
                      +      LP +L  + +   + ++K
Sbjct: 423 KGGKAERHTITIADSCRLLPGSLDKLAKDHNIITKK 458


>gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2]
          Length = 459

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 55/184 (29%), Gaps = 34/184 (18%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDDHPVE 43
             L +D ET        D              LT   I  Y      +      D   + 
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVG-----DSENIH 286

Query: 44  LW--DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIP----IHRWI 94
               D + D  +   + + L +      I+AHN+ F+   L      + +P    +    
Sbjct: 287 GISDDFLKDKPLYADIADTLFDYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVT 346

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL LA++       +L A+    ++ ++       L+      + +  +         +
Sbjct: 347 DTLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDID 406

Query: 153 AWRL 156
           A   
Sbjct: 407 ALSQ 410


>gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
 gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M334]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 1437

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 51  PVMPQVLKEALEN-TDVTIVAHNSYFERTVL-KACFNLDIP--IHRWICTLVLARSNGLP 106
           P + + L + +E   D  +VAHN+ F+   +     N+ +P   +  + TL LAR     
Sbjct: 486 PDIAEELPKFVEFVGDAVLVAHNARFDMGFIQANLKNIGMPELPNPSLDTLELARLLFPS 545

Query: 107 ---SALKAVGEALKLSSQ 121
                L  + +  K+S +
Sbjct: 546 LKNHRLNTLADKFKVSLE 563


>gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
 gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis NCTC 12261]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|304410319|ref|ZP_07391938.1| 3'-5' exonuclease [Shewanella baltica OS183]
 gi|307301970|ref|ZP_07581728.1| 3'-5' exonuclease [Shewanella baltica BA175]
 gi|304351728|gb|EFM16127.1| 3'-5' exonuclease [Shewanella baltica OS183]
 gi|306914008|gb|EFN44429.1| 3'-5' exonuclease [Shewanella baltica BA175]
          Length = 316

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 15/89 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKE 59
            L  D ETR           +  +   + L      D         H        Q LK 
Sbjct: 133 VLGFDTETR-------ASFERGVQHP-LSLIQIATAD--ACYL-FQHAILGEQFTQ-LKT 180

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDI 88
            LE+ ++  V      +   LK  + +++
Sbjct: 181 VLEDENILKVGVGLRSDAQALKRQWGINV 209


>gi|295095557|emb|CBK84647.1| Exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 220

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 32/124 (25%), Gaps = 24/124 (19%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCVHDPVMPQVL------- 57
           ID ET                D  ++   +                 +    +       
Sbjct: 5   IDTETCDLQGGIVEVASVDVIDGKIVNPMSHLVRPDR----PISAQAMAIHRITESMVAD 60

Query: 58  KEALEN------TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKA 111
           K  +E            VAHN+ F+R VL            WICT+ LAR          
Sbjct: 61  KPWIEEIIPLYHGSQWYVAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSN 114

Query: 112 VGEA 115
           +   
Sbjct: 115 MALY 118


>gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10]
 gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30]
 gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10]
          Length = 918

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 38/152 (25%)

Query: 1   MATLF--IDFETR---SPIDLTKCGICKYAEDVCVI-LFAFGFDDH-------------- 40
           M  ++  +D ET    S ID      C   +D  +I  FA   +                
Sbjct: 1   MKPIYAVVDLETTGTDSTIDRIIQFGCVLVQDGKIINRFAADINPDRRISKQIQRLTHIT 60

Query: 41  -----PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-DIPIHRW- 93
                    +       +   +   L  ++   VAHN YF+   L   F    +P     
Sbjct: 61  NQQVSKAPYF-----EDIADTIYNLL--SNTIFVAHNIYFDYHFLSNEFVRCGLPPLSIP 113

Query: 94  -ICTLVLARSNGLPSA---LKAVGEALKLSSQ 121
            I T+ LA+      +   L  + +++     
Sbjct: 114 GIDTVELAQVFLPTESSFRLGDLADSIGFRHD 145


>gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
 gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
          Length = 256

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALENT---------------DVTIVAHNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +                   ++ HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ + L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031]
 gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae P1031]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 1407

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 27/135 (20%)

Query: 6   IDFETRSPIDLT---------KCGICKYAEDVCV-----ILFAFGF-----DDHPVELWD 46
            D ET    ++          K    K  +         I  +  F           + D
Sbjct: 397 FDIETTGLSNINDEIIEIGAVKIKEGKIIDTFETFVNPKIPIS-SFITKLTGIDESMVKD 455

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICTLVLARSNG 104
                 +     E   +  V  VAHN+ F+ + +K      ++ ++   + TL L+R   
Sbjct: 456 APSIEEILPKFLE-FASNSVL-VAHNANFDVSFIKSKAKKFNLNVNNAVLDTLELSRHLY 513

Query: 105 ---LPSALKAVGEAL 116
                  L  + + L
Sbjct: 514 KDLKNYKLDTLADHL 528


>gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
 gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK597]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 638

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 16/102 (15%)

Query: 38  DDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL--- 86
           D  PV++     +          +   +   L++    +VAHN+ F+   L   F     
Sbjct: 64  DPGPVKVHGLTVERLQGAPTFDQVAGRIGAMLQD--RVLVAHNAQFDYDFLAHEFARART 121

Query: 87  DIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEE 125
            +P+ + +CTL L R    P     L  +     +  Q+  +
Sbjct: 122 WLPVSQRLCTLALNRQVDPPTGDMKLGTLAAHYGIPQQRAHD 163


>gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
 gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|302389386|ref|YP_003825207.1| hypothetical protein Toce_0821 [Thermosediminibacter oceani DSM
           16646]
 gi|302200014|gb|ADL07584.1| conserved hypothetical protein [Thermosediminibacter oceani DSM
           16646]
          Length = 420

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 15/92 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHP---VELW--DCVHDPVMPQV 56
            T FID ET         G   Y     +I   + FD      V+ +  D   +P +   
Sbjct: 95  KTAFIDTETTGLA----GGSGTY---AFLIGVGY-FDGDSFKLVQYFMSDFDQEPAVLHS 146

Query: 57  LKEALENTDVTIVAHNSY-FERTVLKACFNLD 87
           LK+ L N    +V+ N   ++  +L A F ++
Sbjct: 147 LKDLLGN-FRGVVSFNGKAYDIPLLSARFLIN 177


>gi|295096912|emb|CBK86002.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 246

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVVNRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKACF---NLDI 88
                  + D  +    K    +             +V HN+ F+   +   F   N DI
Sbjct: 64  EAFGVHGIADEFLLN--KPTFADVADEFLDYIRGAELVIHNASFDIGFMDYEFSKLNRDI 121

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLD 170


>gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
 gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus sp. M143]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|34496475|ref|NP_900690.1| DNA-directed DNA polymerase III subunit epsilon [Chromobacterium
           violaceum ATCC 12472]
 gi|34102328|gb|AAQ58694.1| probable DNA-directed DNA polymerase III (epsilon subunit)
           [Chromobacterium violaceum ATCC 12472]
          Length = 481

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 28/139 (20%)

Query: 6   IDFETRSPI----DLTKCGICKYAEDVCVILFAFGFDDHPVELWD-------------CV 48
           ID ET         +T+ G+    +   V   ++  +                       
Sbjct: 9   IDLETTGGNIARDRITEVGM-VLIDGERVERLSWLVNPGQP--IPPFIENMTGISNEMVA 65

Query: 49  HDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
             P       E L+      ++AHN+ F+   LK       L        CT+ L+R   
Sbjct: 66  GAPPFSAQADELLDRLQGRLLLAHNARFDYGFLKNEFRRHGLRFQARAL-CTVKLSRRLY 124

Query: 105 L---PSALKAVGEALKLSS 120
                 +L ++     +  
Sbjct: 125 PQHFKHSLDSLIARHGIDM 143


>gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
 gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|229472563|gb|ACQ72796.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 7/88 (7%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R        +  V AD +G+E R L           A   G            + A A++
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYL-------ARFDGGKFAKEVVEGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMA 452
               R  GK +   L Y GG       A
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGDSKLGLTA 93


>gi|150865746|ref|XP_001385083.2| mitochondrial DNA polymerase catalytic subunit [Scheffersomyces
           stipitis CBS 6054]
 gi|149387002|gb|ABN67054.2| mitochondrial DNA polymerase catalytic subunit [Scheffersomyces
           stipitis CBS 6054]
          Length = 1061

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 5/144 (3%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFET----GEDLYVTTYAR 415
           I   ++S + A  G   V AD+   E   +A + G+        T               
Sbjct: 675 IGSELKSLIEAPPGYCFVGADVDSEEL-WIASLVGDSMFKIHGGTALGWMNLEGDKHEKT 733

Query: 416 SFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
             +   A++    R   KV      Y  G K   ++       L+               
Sbjct: 734 DLHSKTAEILGISRGDAKVFNYGRIYGAGVKFATRLLKQFNSKLSEAEAEETAKLLYART 793

Query: 476 EDAENFCRWMQENHPEHAIEDLFI 499
           +   +  ++++        E +  
Sbjct: 794 KGEMSSSKYLKRRLYHGGTESVMF 817


>gi|114046520|ref|YP_737070.1| 3'-5' exonuclease [Shewanella sp. MR-7]
 gi|113887962|gb|ABI42013.1| 3'-5' exonuclease [Shewanella sp. MR-7]
          Length = 303

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 50/178 (28%), Gaps = 25/178 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L  D ETR           +  +   + L      D    L+           LK  LE
Sbjct: 122 VLGFDTETR-------ASFERGVQHP-LSLVQLATSD-TCYLFQRAVLGERLAELKPLLE 172

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  +  V      +   LK  +++ +                L  A+  +G   ++ +++
Sbjct: 173 NEQILKVGIGLRGDGQALKRDWDIQVSPR-----------LDLNWAMAQLGAGKEMGTRQ 221

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           +     L  R  K +       +  P  +   +    Y   D       F +L     
Sbjct: 222 LVA-ALLHKRIDKPKKITLSNWQQVPLSQAQIQ----YAVLDALAANLCFWQLIDKLQ 274


>gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
 gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 KQVLEEFQEFCQDA--VLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          ++    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKDVAEK 591


>gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|227495535|ref|ZP_03925851.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831082|gb|EEH63465.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 206

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 25/140 (17%)

Query: 4   LFIDFETRSPID---LTKCGICKYAEDVCVILFAFGFDDH---PVEL-----WD--CVHD 50
           + +D ET    D   +T+    KY +   V  F+   +     PV +      D   V D
Sbjct: 18  VSVDIETTGLGDSDAITELAAVKYQKGQVVETFSSLVNPGRQIPVFITRLTGIDNQLVAD 77

Query: 51  PVMPQVLKEALEN----TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN 103
               + +              ++AHN+ F+   L        L+      I T+  +R+ 
Sbjct: 78  APTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPASIDTVFFSRAL 137

Query: 104 GL-----PSALKAVGEALKL 118
                     L  +     +
Sbjct: 138 LPRPQVQNHRLGTLAHHFGI 157


>gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6]
 gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36]
 gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis
           SK36]
          Length = 1462

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIP--IHRWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P  I   I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKIIQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|157961820|ref|YP_001501854.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC
           700345]
 gi|157846820|gb|ABV87319.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC
           700345]
          Length = 215

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 48/143 (33%), Gaps = 26/143 (18%)

Query: 3   TLFIDFETRSPID------------LTKCG--ICKYAE----DVCVILFAFGFDD-HPVE 43
            + +DFET                 + K G  + ++ +       +  F   +       
Sbjct: 18  VIVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDRFQQLMNPGFRISGFIESYTGISNAM 77

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIP-IHRWICTLVLAR 101
           L D      +     + + +    +VAHN+ F++  L      ++   + ++ C++++AR
Sbjct: 78  LADAPSCEEVMAQFADFIGD--YNLVAHNASFDQRFLDAELKRINCHYLGQFACSMLIAR 135

Query: 102 SN---GLPSALKAVGEALKLSSQ 121
                     L ++     +   
Sbjct: 136 RLYQAAPNHKLGSLVSYKNIQHD 158


>gi|295131979|ref|YP_003582655.1| polysaccharide biosynthesis protein [Zunongwangia profunda SM-A87]
 gi|294979994|gb|ADF50459.1| polysaccharide biosynthesis protein [Zunongwangia profunda SM-A87]
          Length = 240

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 49/190 (25%), Gaps = 53/190 (27%)

Query: 21  ICKYAEDVCVILFAFG----------------FDDHPVELWDCVHDPVMPQVLKEALENT 64
              +AE   ++  + G                + +    L D         +L E     
Sbjct: 57  AGIWAEFGKIVCISVGFLSLKDGIRNFRLKTFWGEEKSILIDFSS------LLNEHFSKP 110

Query: 65  DVTIVAHNSY-FERTVLKACFNLD----------IPIHRWI----CTLVLARSNGLPS-- 107
              + AHN   F+   +     +           I    W      T+ L R        
Sbjct: 111 YHLLCAHNGKEFDFPFIARRMIIHNIELPEKLNSIGRKPWEIPHLDTMELWRFGDYKHFT 170

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           +LK +   L + S K                 E              +   +YC+ DV  
Sbjct: 171 SLKLLTNVLGIPSPK--------------NDIEGSQVYEVFYTENDVQRIIKYCERDVVA 216

Query: 168 TREIFKRLEP 177
             +I  RL+ 
Sbjct: 217 IAQILLRLKQ 226


>gi|113676437|ref|NP_001038930.1| exonuclease 3'-5' domain-containing protein 1 [Danio rerio]
 gi|123911622|sp|Q0P3U3|EXD1_DANRE RecName: Full=Exonuclease 3'-5' domain-containing protein 1;
           AltName: Full=Exonuclease 3'-5' domain-like-containing
           protein 1
 gi|112418997|gb|AAI22449.1| Zgc:154068 [Danio rerio]
          Length = 378

 Score = 39.7 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 25/101 (24%), Gaps = 9/101 (8%)

Query: 13  PIDLTKCGICKYAEDVCVILFAFGFDDHPVEL---WDCVHDPVMPQVLKEALENTDVTIV 69
             D+   G   Y +     L         V        +  P     L   LENT +  V
Sbjct: 133 EQDVIGIGADVYGQSGQERLCWLQVATKKVVYLFDILLLGGPAFKNGLSMILENTHILKV 192

Query: 70  AHNSYFERTVLKACFN--LDIPIHRWICTLVLARSNGLPSA 108
            H    +   +  C      + +     T V         +
Sbjct: 193 LH----DCRCITRCLRTEFRVQLTNVFDTQVAELLLFFNES 229


>gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
 gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|258406595|ref|YP_003199337.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium
           retbaense DSM 5692]
 gi|257798822|gb|ACV69759.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium
           retbaense DSM 5692]
          Length = 233

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 21/92 (22%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLAR 101
           D      +   L   L      ++ HN   +   L    K      + +H  I TL LAR
Sbjct: 97  DAPKIGKVLPELIAYL--GTSLLIGHNIALDLQFLQKACKKHLGHPL-VHPCIDTLRLAR 153

Query: 102 S--------------NGLPSALKAVGEALKLS 119
                            +   L+ + +A  L 
Sbjct: 154 VYEESRWESYYDRFTLRVSYQLQELAQAYGLP 185


>gi|229472567|gb|ACQ72798.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 38/143 (26%), Gaps = 12/143 (8%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R        +  V AD +G+E R L           A   G            + A A++
Sbjct: 13  RELFHPGANRSQVGADASGLELRCLGHYL-------ARFDGGKFAKEVVEGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R  GK +   L Y GG       A       +    + K            +    
Sbjct: 66  CGTDRKSGKGVTYCLIYGGGDSKLGLTA-----GASKAQAVKKGEEIRSRSMANLDGFAA 120

Query: 485 MQENHPEHAIEDLFIGTACERVK 507
           +     E A   +  G     ++
Sbjct: 121 LNAAVQERAKSGVLKGLDGRPIR 143


>gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1403

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 38/141 (26%), Gaps = 27/141 (19%)

Query: 2   ATLFIDFETRS---PIDLTKCGICKYAEDVCV-----------ILFAFGFDD----HPVE 43
             +  D ET       D          ED  +           +   F  +     +   
Sbjct: 372 KYVVFDIETTGFSAENDRIIEIGAVKIEDGEIIDRFSTFVNPEVPIPFKIEKLTSINDSM 431

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLA 100
           +        +     E  E     +VAHN+ F+   ++       +    +  + TL +A
Sbjct: 432 VMGAPKIEQVLPEFLEFCE--GCVVVAHNAEFDTGFIRNKAAKQGMTFD-NTVVDTLAIA 488

Query: 101 RSNGLPSA---LKAVGEALKL 118
           R          L  + +   +
Sbjct: 489 RFLVPRLHNFKLDTLTKHFNV 509


>gi|217972253|ref|YP_002357004.1| 3'-5' exonuclease [Shewanella baltica OS223]
 gi|217497388|gb|ACK45581.1| 3'-5' exonuclease [Shewanella baltica OS223]
          Length = 320

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 15/89 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKE 59
            L  D ETR           +  +   + L      D         H        Q LK 
Sbjct: 137 VLGFDTETR-------ASFERGVQHP-LSLIQIATAD--ACYL-FQHAILGEQFTQ-LKT 184

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDI 88
            LE+ ++  V      +   LK  + +++
Sbjct: 185 VLEDENILKVGVGLRSDAQALKRQWGINV 213


>gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP]
 gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma
           pulmonis]
          Length = 1435

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 56  VLKEALEN-TDVTI----VAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL-- 105
            L+EALE  + +      VAHN+ F+   LK  F   N++      I TL LA+      
Sbjct: 468 ELQEALEKISSIFKARIMVAHNAAFDHNFLKQKFIDNNIEFEEMISIDTLNLAKVLNPIY 527

Query: 106 -PSALKAVGEAL 116
               L  V   L
Sbjct: 528 RSYRLGEVASKL 539


>gi|157803677|ref|YP_001492226.1| ribonuclease D [Rickettsia canadensis str. McKiel]
 gi|157784940|gb|ABV73441.1| Ribonuclease D [Rickettsia canadensis str. McKiel]
          Length = 284

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 54/201 (26%), Gaps = 39/201 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E             +Y     + +     +++   +    +      +  + L +
Sbjct: 23  LSIDTE----------FERRYTYYAQLSIIQVKAENYCGIIDALSNVD--LNIFNKLLAD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEAL-KLSS 120
            ++T + H    +  +    F             + A   G    L    +   L  ++ 
Sbjct: 71  NNITKIFHAPREDLEIFYNLF--KTLPSNVFDIQIAANICGFGKQLSYDDLCYKLFGIAI 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +    + R                           Y   DV     ++K  + L++
Sbjct: 129 DKTHQKSNWLKRPITS-------------------DMLNYAMLDVE---YLYKIYKELNN 166

Query: 181 KEQELWYLDQTINDRGYCVDV 201
                  +++     G  +DV
Sbjct: 167 IIIRSNLVNKYQTTLGSLLDV 187


>gi|146301193|ref|YP_001195784.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
 gi|146155611|gb|ABQ06465.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
           UW101]
          Length = 453

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 43/147 (29%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV--ELWDCVHDP----------- 51
           +D ET            ++ E+  +   A + FD H V  +    V+             
Sbjct: 5   LDIETTG---------GQFNEEG-ITEIAIYKFDGHEVVDQFISLVNPEIPIQPFVVKLT 54

Query: 52  -----------VMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
                         +V K  +E  TD  IVAHN+ F+  +L+        D    + +CT
Sbjct: 55  GINNAMLRSAPKFYEVAKRIIEITTDCVIVAHNASFDYRILRTEFRRLGYDFE-AKTLCT 113

Query: 97  LVLARSNG---LPSALKAVGEALKLSS 120
           + LA+         +L  +  AL +  
Sbjct: 114 VELAKKLIPEQPSYSLGKLVRALGIPM 140


>gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
           8052]
 gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
           8052]
          Length = 1446

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 21/180 (11%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVE---LWDCV------- 48
              +D ET         +T+ G+ K  +   +  F+   +        + +         
Sbjct: 423 YCVLDLETTGFSPQTEKITEIGVMKIKDGKVIDKFSTFVNPQKSIPMRVVEVTKITDDMV 482

Query: 49  -HDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSN 103
            +   + +V  + LE      +VAHN+ F+   LK        +     +I TL LA+  
Sbjct: 483 KNAETIDKVFPKLLEFIEGSVLVAHNADFDIGFLKHNAKVLGYEFDFT-YIDTLGLAQDV 541

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETH-ECLYDRNKPNHREAWRLFGEYCK 162
                   +G   K    K+E     +            + ++ K    +       Y  
Sbjct: 542 FPDYKSYKLGRIAKNLGIKVEVAHRALDDVDTTVKVFNIIIEKLKERGAQTLSDIDLYAA 601


>gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
 gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus oralis ATCC 35037]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|266625917|ref|ZP_06118852.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
 gi|288862187|gb|EFC94485.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
          Length = 333

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 69  VAHNSYFERTVLKACFNL-DIPIHR-WICTLVLARSNGLPSA---LKAVGEALKLS 119
           VAHN+ F+ + +     +  +P     + T+ LAR          L  V +AL +S
Sbjct: 3   VAHNASFDVSFINRNAEILGLPFEPTVLDTVTLARFLLPNLNRFKLDTVAKALNIS 58


>gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
 gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
          Length = 1463

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPKISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis]
 gi|1090178|prf||2018296A DNA polymerase III
          Length = 1435

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 56  VLKEALEN-TDVTI----VAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL-- 105
            L+EALE  + +      VAHN+ F+   LK  F   N++      I TL LA+      
Sbjct: 468 ELQEALEKISSIFKARIMVAHNAAFDHNFLKQKFIDNNIEFEEMISIDTLNLAKVLNPIY 527

Query: 106 -PSALKAVGEAL 116
               L  V   L
Sbjct: 528 RSYRLGEVASKL 539


>gi|209695823|ref|YP_002263753.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
 gi|208009776|emb|CAQ80082.1| DNA polymerase III, epsilon chain [Aliivibrio salmonicida LFI1238]
          Length = 243

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 38/168 (22%), Gaps = 44/168 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-------------FGFDDHPVELWDCV 48
             + +D ET     +   G   Y     +I                F     P  L D  
Sbjct: 10  RIIVLDTETTG---MNLSGGPIYEGH-RIIEIGAVEIINRKLTGNHFHVYIKPDRLIDLE 65

Query: 49  ----HD------------PVMPQVLKEALENTDVTIVAHNSYFERTV-------LKACFN 85
               H               +       +      +VAHN+ F+          L     
Sbjct: 66  AIDVHGITDEFLYGKPEYKDIHDEFLAFI--KGAELVAHNAPFDVGFMDYEFSKLNKLIG 123

Query: 86  LDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                 +   TL +A+         L  +     + +        L+ 
Sbjct: 124 TTDQYCKITDTLAMAKKISPGKRNNLDVLCGRYGIDNSHRTLHGALLD 171


>gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
           27755]
 gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
           27755]
          Length = 1521

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLPS 107
             +     + + +    +VAHN+ F+ + ++       ++        T+ LAR      
Sbjct: 544 ETILPQFLKFVGDA--VLVAHNASFDVSFIEENCRQQGIEPDFTSV-DTVGLARVLLPTL 600

Query: 108 A---LKAVGEALKLSSQ 121
           +   L  V +AL +S +
Sbjct: 601 SKFKLNVVAKALNISQE 617


>gi|3832516|gb|AAC70781.1| rabaptin-4 [Homo sapiens]
          Length = 829

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 41/146 (28%), Gaps = 19/146 (13%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA-------HT 206
           W  + EY        REI      LS  ++E          +    D             
Sbjct: 143 WAQYREYA------EREIADLRRRLSEGQEEENL---ENEMKKAQEDAEKLRSVVMPMEK 193

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
               +  + T+ + +++ L    V         +      LE  + + +  ++  Q    
Sbjct: 194 EIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAE 253

Query: 265 SNKKLTPQAIQVF-NNRMRASRSAVL 289
             +K   +   +    R + ++    
Sbjct: 254 KLRKELHEVCHLLEQERQQHNQLKHT 279


>gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and
           Excinuclease ABC, C subunit [Thiomonas sp. 3As]
          Length = 469

 Score = 39.7 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 33/140 (23%)

Query: 6   IDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDHPVELWD--------------- 46
           +D ET         +T+  + +  E   V+   +    +P +                  
Sbjct: 8   LDLETTGSNPVLDRITEVAVMR-VEQGEVVA-KWSRLVNPGQRIPPFIQQLTGIDDAMVA 65

Query: 47  --CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
                  V+P++L     +  V  VAHN  F+   LK       +D+ +    CT+ L+R
Sbjct: 66  GAPAFGEVLPELLAAL--DGAVL-VAHNVRFDHGFLKQAAAREGVDLRVKTL-CTVRLSR 121

Query: 102 SNGL---PSALKAVGEALKL 118
                     L A+     L
Sbjct: 122 KLYPQARGHGLDAIMRRHGL 141


>gi|294649872|ref|ZP_06727272.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter haemolyticus ATCC 19194]
 gi|292824246|gb|EFF83049.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 452

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 50/181 (27%), Gaps = 28/181 (15%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDDHPVE 43
             L +D ET        D              LT   I  Y      +  +        E
Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVDVHGITDE 284

Query: 44  LW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI--PIHRWICTL 97
              D      +   L   L      I+AHN+ F+   L        L +   +     TL
Sbjct: 285 FLQDKPKYAEIADALFAYL--KGAEIIAHNATFDMNFLDMEFKRVGLPLLSEVCEVTDTL 342

Query: 98  VLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            LA++       +L A+    ++ ++       L+      + +  +         +A  
Sbjct: 343 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDIDALS 402

Query: 156 L 156
            
Sbjct: 403 Q 403


>gi|282880114|ref|ZP_06288834.1| putative DNA polymerase III subunit alpha [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305987|gb|EFA98027.1| putative DNA polymerase III subunit alpha [Prevotella timonensis
           CRIS 5C-B1]
          Length = 1235

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/93 (8%), Positives = 28/93 (30%), Gaps = 7/93 (7%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKE 128
             +   +++      + + +   +    ++L+R     +  ++      +  +K      
Sbjct: 735 ISYPIPIMEKYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKKKAIVDA 791

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           +  +F +G        +        W  F  Y 
Sbjct: 792 MKPKFIEGGKKNGYDPKILDAIWADWEKFASYA 824


>gi|182417780|ref|ZP_02949096.1| putative exonuclease [Clostridium butyricum 5521]
 gi|237667945|ref|ZP_04527929.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182378504|gb|EDT76035.1| putative exonuclease [Clostridium butyricum 5521]
 gi|237656293|gb|EEP53849.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 975

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 60/189 (31%), Gaps = 35/189 (18%)

Query: 2   ATLFIDFETRSPI----DLTKCGICKYAED----VCV-------ILFAF---GFDDHPVE 43
             +++D ET        ++ + G  K+ ++              +              E
Sbjct: 11  NVIYLDIETTGLDETSSEIIEIGAIKFKDNTITTFETLIRPRGRVPIGIYNLCTGLSKEE 70

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           L+       + + L + LE+  + ++ HN  FE+   +      I  +  + ++ LA   
Sbjct: 71  LYSAPSLGNVRESLSQFLED--LPLICHNGNFEKKFFRYHLP-QIK-NTIMDSMELAAIL 126

Query: 104 GL---PSALKAV---------GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
                   L A+          E  +     +   K + +  C+  + E    + +  + 
Sbjct: 127 EPYHKEYNLNALMKTVTDMNKNEIHRGLDDSINTLKVVNSLLCRLWSSEEKKGKKRTLY- 185

Query: 152 EAWRLFGEY 160
           E    +  Y
Sbjct: 186 ENINKYYPY 194


>gi|309810273|ref|ZP_07704115.1| exonuclease [Dermacoccus sp. Ellin185]
 gi|308435765|gb|EFP59555.1| exonuclease [Dermacoccus sp. Ellin185]
          Length = 534

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 54  PQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLAR 101
              + E + +    +V+HN+ F+  V++       +  P   + CTLV AR
Sbjct: 76  LTEIVEFIGDD--IVVSHNASFDIGVIRYACAADGIAWPRIDFFCTLVAAR 124


>gi|302669686|ref|YP_003829646.1| hypothetical protein bpr_I0316 [Butyrivibrio proteoclasticus B316]
 gi|302394159|gb|ADL33064.1| hypothetical protein bpr_I0316 [Butyrivibrio proteoclasticus B316]
          Length = 254

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 52  VMPQVLKEALENTDVTIVA-HNSYFERTVLKACFNLDIPIHRWICTL-VLAR 101
                + + LEN ++  +  +N+ F+ + L+     ++    W   + + A 
Sbjct: 137 EALNDIVQFLENNNIAKIFAYNAKFDYSHLR-----ELSAFEWYDIMRLAAY 183


>gi|260587424|ref|ZP_05853337.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|331083705|ref|ZP_08332816.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542291|gb|EEX22860.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|330403916|gb|EGG83468.1| hypothetical protein HMPREF0992_01740 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 236

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 29/146 (19%)

Query: 1   MATLFIDFETR----SPIDLTKCGICKYAEDVCVIL-FAFGFDDH----------PVELW 45
           M  + +D ET     S   + + G  K   +  V+  +    +                 
Sbjct: 2   MEYVALDLETTGLEPSKDRIIEIGAVK-VRNKEVVGEYGTLINPQMEIPDRITELTGISN 60

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIPIHRWI-----CTLV 98
           D V    +       L +   ++ ++ HN  F+ + +K      +            TL 
Sbjct: 61  DMVQGKPLIAQALGELLDFCEELPLLGHNLMFDYSFVKHQA---VNAGMVFEKKGMDTLK 117

Query: 99  LARSN---GLPSALKAVGEALKLSSQ 121
           LAR+        +L+ +    ++  +
Sbjct: 118 LARALLPELPSRSLQNLRMHYEIPQK 143


>gi|146312061|ref|YP_001177135.1| exodeoxyribonuclease X [Enterobacter sp. 638]
 gi|145318937|gb|ABP61084.1| Exodeoxyribonuclease X [Enterobacter sp. 638]
          Length = 220

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           VAHN+ F+R VL            WICT+ LAR          +   
Sbjct: 78  VAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSNMALY 118


>gi|84995770|ref|XP_952607.1| DNA binding protein [Theileria annulata strain Ankara]
 gi|65302768|emb|CAI74875.1| DNA binding protein, putative [Theileria annulata]
          Length = 247

 Score = 39.7 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 47/177 (26%), Gaps = 27/177 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
             L  D E     D        Y      ++       D    ++       +P   K  
Sbjct: 80  KLLGFDLE--YVPDYYSNLDYSYKRCKPSIVQIC---GDSTCFIYLIYKIGYIPN--KGM 132

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
              + +  V+H +  +  +L   +        ++              LK + +   +  
Sbjct: 133 FITSFILQVSHGAPSDMRLLFKHYG--TKCTNFVD-------------LKDLCKDYNIYP 177

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
             ++   E +               +     +       Y   D  VTREIF +L P
Sbjct: 178 ASLKNATESV----LNLKLNKKQQCSNWEADKLVPDQISYASTDAWVTREIFIKLNP 230


>gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018]
          Length = 301

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/303 (10%), Positives = 91/303 (30%), Gaps = 49/303 (16%)

Query: 2   ATLFIDFETRSP----IDLTKCGICKYAEDVCVI-----LF--AFGFDDHPVELWDCVHD 50
               +D ET        ++ + GI +   +  ++     L   +   D     L    +D
Sbjct: 15  DYCVLDTETTGLSAYYDEIIEIGILR-VRNNEIVDRYDQLIKPSIEVDGFITALTGITND 73

Query: 51  --PVMPQ------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
               MP        +   + + D+ +  HN+ F+   L   F   +  ++++ T+  AR 
Sbjct: 74  MLEDMPSISSVKNDVLSFI-SEDIIL-GHNTSFDMRFLNEGFKEQLS-NQYMDTMQFARK 130

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    L  + + L L + +     + IA             +   +  ++  +   
Sbjct: 131 LYPELKHHRLSDLTDYLGLHNNEHRALADCIA------------TKELYDAVKSRMVEKN 178

Query: 160 YCKGDVTVTRE-IFKRLEPLSSKEQELWYLDQT-INDRGYCVDVALAHTLNQIVDVERTK 217
               D+ +T E    +   + + + +   +D+       + V       + +    +   
Sbjct: 179 LAIEDLWITGESHGGKGIDIKAIKPDEVVVDKDGFFYNRHVVFTGKLEKMLRKDAQQIVV 238

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-DLTETTCQRVLSSNKKLTPQAIQV 276
                     G V  +   ++    +  +   +      +++  +     K        +
Sbjct: 239 NL--------GGVLDNSVTKQTNYLILGDNDYNAILKGDKSSKHKKAEKLKIEGQDIEII 290

Query: 277 FNN 279
             +
Sbjct: 291 DEH 293


>gi|290991532|ref|XP_002678389.1| predicted protein [Naegleria gruberi]
 gi|284092001|gb|EFC45645.1| predicted protein [Naegleria gruberi]
          Length = 839

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 24/108 (22%)

Query: 4   LFIDFETRSPIDLTK-CGICKYAE-------DVCVILFAFGFDDHPVELWDCVH--DPVM 53
           + +D E     DL K  G     +          ++          + + D        +
Sbjct: 68  IGLDCE--GSPDLVKQSGTLCIIQISLINKLHPEIL---------DIYIIDVFKIGGQEL 116

Query: 54  PQV--LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVL 99
                L++ LE+  V  V H+   +  VL    N    ++    T + 
Sbjct: 117 SNKTNLRKLLESKTVLKVIHDGRRDSDVLFYQMN-GTKLNFTFDTQIA 163


>gi|258620661|ref|ZP_05715698.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573]
 gi|262172598|ref|ZP_06040276.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
 gi|258587176|gb|EEW11888.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM573]
 gi|261893674|gb|EEY39660.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
          Length = 209

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 48/188 (25%), Gaps = 56/188 (29%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELWDCVHD 50
            + +D ET S       L      K  ++         V L A    D   V +    H 
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLCAPQSLDSGSVRIHKIRHQ 89

Query: 51  P--------VMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIP--------- 89
                         L + +   +  +V ++  +++T+L    +      +P         
Sbjct: 90  DLQDGLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQI 147

Query: 90  ---------IHRWICTLVLARSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCKGETH 139
                     + +              +L A+   L L    K +  ++ IA        
Sbjct: 148 YHDKLEKHLPNAYFD-----------LSLDAICRHLDLPLQDKHDALQDAIAAALVFVRL 196

Query: 140 ECLYDRNK 147
                   
Sbjct: 197 TKGDLPQF 204


>gi|313672733|ref|YP_004050844.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939489|gb|ADR18681.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 195

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 39/156 (25%), Gaps = 48/156 (30%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-------FGFDDHPVEL------WDCV 48
             + ID ET         GI  Y +   ++  A          +                
Sbjct: 10  DFIVIDLETT--------GISPY-KGAKIVEIAALKIEKGLKINPKNSFYSLVNPLIPIP 60

Query: 49  HD------------------PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLD 87
           +                     +     E L+   +  +  N  F+ + +K     +N  
Sbjct: 61  YSAYRVHKISNEIVKDYPTIEKVLPKFLEFLDTPFI--IGQNISFDYSFIKYFSDLYNFR 118

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSS 120
           +     I T+ +A+          L  +     + +
Sbjct: 119 LKEFIIIDTINIAKKIAPNLKRYNLDNLITYFGIEN 154


>gi|15601971|ref|NP_245043.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|31563219|sp|Q9CPE0|DPO3E_PASMU RecName: Full=DNA polymerase III subunit epsilon
 gi|12720318|gb|AAK02190.1| DnaQ [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 253

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 13/118 (11%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRW---ICTLVLARSNGL 105
            + Q   + ++  ++ I  HN+ F+   +       NL+I          TL +AR    
Sbjct: 83  EVAQQFIDYIQGAELLI--HNAPFDVGFMDYEFKKLNLNINTDAICMVTDTLQMARQMYP 140

Query: 106 PS--ALKAVGEALKLSSQKMEEGKELIA---RFCKGETHECLYDRNKPNHREAWRLFG 158
               +L A+ + L + + K      L+          T           +     +  
Sbjct: 141 GKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSLFDENEPEIAVVA 198


>gi|77408519|ref|ZP_00785256.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae COH1]
 gi|77172876|gb|EAO76008.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae COH1]
          Length = 835

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL--- 105
            +   + + +E+     VAHN  F+  +L         ++   R   T+ L++       
Sbjct: 89  QVAHHIYQLIED--CIFVAHNVKFDANLLAEQLFLEGFELRTPRI-DTVELSQVFYPCLE 145

Query: 106 PSALKAVGEALKLS 119
             +L A+ E+L + 
Sbjct: 146 KYSLGALAESLNIE 159


>gi|295698439|ref|YP_003603094.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola
           USDA]
 gi|291157346|gb|ADD79791.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola
           USDA]
          Length = 249

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDI------PIHRWICTLVLARSNG 104
            +     + + N+++ I  HN+ F+   +      ++        I R   TL +ARS  
Sbjct: 81  EIVDDFVDFIRNSELII--HNASFDVGFINHELSRIEYSFCSIKKICRITDTLKIARSLF 138

Query: 105 LPS--ALKAVGEALKLSSQK 122
                +L A+ +   +   K
Sbjct: 139 PGKKNSLDALCDRYHIDRSK 158


>gi|225012865|ref|ZP_03703298.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
           MS024-2A]
 gi|225002987|gb|EEG40964.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium
           MS024-2A]
          Length = 458

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 23/136 (16%)

Query: 6   IDFET----RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWD---------CVHD 50
           +D ET         +T+  I KY     V  F+   +         +             
Sbjct: 5   LDIETTGGKYDEEGITEIAIYKYNGQKVVDQFSSLINPQKEIQPFVEKLTGINSKMLRSA 64

Query: 51  PVMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN--- 103
           P   +V K  +E   D  +VAHN+ F+  +L+                CT+ L++     
Sbjct: 65  PKFYEVAKRIVELTEDCILVAHNASFDYRILQTEFRRLGFPFERKSI-CTVELSQKLLPD 123

Query: 104 GLPSALKAVGEALKLS 119
               +L  +  +L + 
Sbjct: 124 EPAYSLGKLVRSLGIP 139


>gi|262166840|ref|ZP_06034571.1| ribonuclease D [Vibrio cholerae RC27]
 gi|262024728|gb|EEY43402.1| ribonuclease D [Vibrio cholerae RC27]
          Length = 284

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 54/201 (26%), Gaps = 39/201 (19%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E             +Y     + +     +++   +    +      +  + L +
Sbjct: 23  LSIDTE----------FERRYTYYAQLSIIQVKAENYCGIIDALSNVD--LNIFNKLLAD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEAL-KLSS 120
            ++T + H    +  +    F             + A   G    L    +   L  ++ 
Sbjct: 71  NNITKIFHAPREDLEIFYNLF--KTLPSNVFDIQIAANICGFGKQLSYDDLCYKLFGIAI 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            K  +    + R                           Y   DV     ++K  + L++
Sbjct: 129 DKTHQKSNWLKRPITS-------------------DMLNYAMLDVE---YLYKIYKELNN 166

Query: 181 KEQELWYLDQTINDRGYCVDV 201
                  +++     G  +DV
Sbjct: 167 IIIRSNLVNKYQTTLGSLLDV 187


>gi|167034708|ref|YP_001669939.1| DNA polymerase III subunit epsilon [Pseudomonas putida GB-1]
 gi|166861196|gb|ABY99603.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
          Length = 252

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR-------- 92
              L        + +   E ++    T+V HN+ F+   +   F L     R        
Sbjct: 67  DAFLVGKPRFGDVAEEFFEFIQ--GATLVIHNAAFDVGFINNEFALIGQQDRADVSQHCT 124

Query: 93  WICTLVLARSNGLPS--ALKAVGEALKLSS 120
            + TL+LARS       +L A+ +   + +
Sbjct: 125 ILDTLLLARSRHPGQRNSLDALCKRYDIDN 154


>gi|1050523|emb|CAA62580.1| rabaptin-5 [Homo sapiens]
          Length = 862

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 41/146 (28%), Gaps = 19/146 (13%)

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA-------HT 206
           W  + EY        REI      LS  ++E          +    D             
Sbjct: 143 WAQYREYA------EREIADLRRRLSEGQEEENL---ENEMKKAQEDAEKLRSVVMPMEK 193

Query: 207 LNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKTWLFLETGLHLEDLTETTCQRVLS 264
               +  + T+ + +++ L    V         +      LE  + + +  ++  Q    
Sbjct: 194 EIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAE 253

Query: 265 SNKKLTPQAIQVF-NNRMRASRSAVL 289
             +K   +   +    R + ++    
Sbjct: 254 KLRKELHEVCHLLEQERQQHNQLKHT 279


>gi|332522391|ref|ZP_08398643.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313655|gb|EGJ26640.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 1466

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 11/116 (9%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPSA 108
            + +  +   ++    +VAHN+ F+   +        +P+     I TL  AR+      
Sbjct: 495 QVLEAFQAFCQDA--ILVAHNASFDVGFMNANYERHHLPLIKQPVIDTLEFARNLYPEY- 551

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
                +   L          L          E          +EA    G     D
Sbjct: 552 -----KRHGLGPLTKRFQVSLDHHHMANYDAEATGRLLFIFLKEAREKHGLTNLLD 602


>gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
 gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type
           [Eubacterium eligens ATCC 27750]
          Length = 1513

 Score = 39.3 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 31/142 (21%)

Query: 3   TLFIDFETRS----PIDLTKCGICKYAEDVCVI-LFAFGFDDHPVELWDCV--------- 48
            +  D ET         + + G  K   +  ++  F+   +                   
Sbjct: 473 YVVFDLETTGFSAEVDRIIEIGAVKVC-NGEIVDRFSTFVNPE----IPIPFRIETLTHI 527

Query: 49  ------HDPVMPQVLKEALE-NTDVTIVAHNSYFERT-VLKACFNLDIPIH-RWICTLVL 99
                 + P + ++L E LE      +VAHN+ F+ + ++     + I +    I T++L
Sbjct: 528 NDQMVMNAPKIEEILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTTIIDTVLL 587

Query: 100 ARSNGL---PSALKAVGEALKL 118
           A+          L  + + L +
Sbjct: 588 AQFLMPNLHNYKLDTLTKHLNV 609


>gi|332073070|gb|EGI83549.1| exonuclease, DNA polymerase III, epsilon subunit family domain
           protein [Streptococcus pneumoniae GA17570]
          Length = 168

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 46/161 (28%), Gaps = 47/161 (29%)

Query: 1   MATL-----FIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPV 52
           M T+      +D E   T S   + + GI    ED  ++              D      
Sbjct: 1   MKTIGNRYVVVDLEATSTGSKAKIIQVGI-VVIEDGEIV---------DHYTTDVNPHEP 50

Query: 53  MPQVLKEA--LEN--------------------TDVTIVAHNSYFERTVLKACF---NLD 87
           +   +KE   L +                     D   VAHN  F+  +L         +
Sbjct: 51  LDAHIKELTGLTDQRLAQAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYE 110

Query: 88  IPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEE 125
           +   R   T+ LA+         +L  +   L +  +    
Sbjct: 111 LRNPRV-DTVELAQVFFPELEKYSLPILCRELGIPLKHAHT 150


>gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 1466

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 11/114 (9%)

Query: 56  VLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPSALK 110
            + EA ++   +  +VAHN+ F+   +        +P+     I TL  AR+        
Sbjct: 495 KVLEAFQDFCQNTILVAHNASFDVGFMNANYERHQLPLINQPVIDTLEFARNLYPEY--- 551

Query: 111 AVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
              +   L          L          E          +EA    G     D
Sbjct: 552 ---KRHGLGPLTKRFQVSLDHHHMANYDAEATGRLLFIFLKEAREKHGLTNLLD 602


>gi|298252714|ref|ZP_06976508.1| ribonuclease D [Gardnerella vaginalis 5-1]
 gi|297533078|gb|EFH71962.1| ribonuclease D [Gardnerella vaginalis 5-1]
          Length = 476

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 50/182 (27%), Gaps = 39/182 (21%)

Query: 6   IDF-ETRSP-IDLTKCGICKYAEDVC-VILFAFGFDDHPVEL------------WDCVHD 50
           ID  E       L   G    A D      F +  +D  ++              +    
Sbjct: 19  IDTLEAYKDYCSLLAAGSGPLAADAERASGFRYSHEDWLIQFKRKGAGIGLLDPIELTKL 78

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-AL 109
                   +A+ +  V  + H+S  +       F++ +       T + A+  G     L
Sbjct: 79  GADWNEFNKAVGD--VPWIIHDSMQDLPGF---FDIGLRPRALFDTEIAAKLLGRKRFGL 133

Query: 110 KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTR 169
            +V E              L     K  +      R  P      R +  Y   DV +  
Sbjct: 134 SSVTEYY------------LGLTLAKEHSAADWSYRPLP------RDWRNYAALDVELLI 175

Query: 170 EI 171
           E+
Sbjct: 176 EL 177


>gi|198274347|ref|ZP_03206879.1| hypothetical protein BACPLE_00491 [Bacteroides plebeius DSM 17135]
 gi|198272837|gb|EDY97106.1| hypothetical protein BACPLE_00491 [Bacteroides plebeius DSM 17135]
          Length = 1265

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/92 (7%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  +++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPIMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGKKNGHDPKVLEKIWADWEKFASYA 854


>gi|304437027|ref|ZP_07396990.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369978|gb|EFM23640.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 180

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 48/206 (23%), Gaps = 57/206 (27%)

Query: 2   ATLFIDFETR---SPIDLTKC------------GICKYAEDVC------VILFAFG--FD 38
             L  D ET    S  ++               G+   A          +   +      
Sbjct: 4   KVLVFDTETTGFRSDDEVLTLAVVNGVGETMVDGMYAPARKAEWPDAERINRISPAMVAG 63

Query: 39  DHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV 98
             P+      H       L+      D  +V +N+ F+  +L     + I        ++
Sbjct: 64  CDPI----LAHRE----ELERLFNAPDTLLVGYNTEFDIRLLAQ-SGIRITNPNRHDVML 114

Query: 99  L-ARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLF 157
             +    +P               K+ E  +                             
Sbjct: 115 AFSAFRKVP-----DARRGGYRWWKLTECADYYRYDWGNTVAHG---------------- 153

Query: 158 GEYCKGDVTVTREIFKRLEPLSSKEQ 183
                 D   T   +++++    +EQ
Sbjct: 154 ---ALADTLATLFCYQKMKEPVYEEQ 176


>gi|319744611|gb|EFV96961.1| DNA polymerase III [Streptococcus agalactiae ATCC 13813]
          Length = 821

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL--- 105
            +   + + +E+     VAHN  F+  +L         ++   R   T+ L++       
Sbjct: 75  QVAHHIYQLIED--CIFVAHNVKFDANLLAEQLFLEGFELRTPRI-DTVELSQVFYPCLE 131

Query: 106 PSALKAVGEALKLS 119
             +L A+ E+L + 
Sbjct: 132 KYSLGALAESLNIE 145


>gi|262038648|ref|ZP_06012015.1| exonuclease RNase T and DNA polymerase III [Leptotrichia
           goodfellowii F0264]
 gi|261747318|gb|EEY34790.1| exonuclease RNase T and DNA polymerase III [Leptotrichia
           goodfellowii F0264]
          Length = 195

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 60/212 (28%), Gaps = 61/212 (28%)

Query: 1   MA--TLFIDFET-----RSPIDLTKCGICKYAED------VCVILFAFGFDDHPVEL--- 44
           M    +F D ET      S + ++   +    E            F F  +  P+     
Sbjct: 1   MKKNIIFFDVETNGKMGSSVLSISAIKVSYDFEKNSWEKVSEYDRFYFRNEGEPINFGAI 60

Query: 45  -WDCVHDPVMPQV---------LKEALEN------TDVTIVAHNSYFERTVLKACFNLDI 88
             + + D V+ +           KE L++           VAHN  F+R+       +  
Sbjct: 61  NVNGLTDEVIAEKRENADYPSTFKEDLDSFYLYCQDTKHFVAHNIKFDRSF------IPF 114

Query: 89  PIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
           P+     T+                       + ++  +  I  +   +  + +      
Sbjct: 115 PLKNQFDTM----------------------MENIDIVRAGINEYGSYKWPKLMECAKFY 152

Query: 149 NHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           N         E    DV +T  +F ++     
Sbjct: 153 NVPMDEEQLHE-SLYDVLITFRVFYKMSKNPF 183


>gi|302873722|ref|YP_003842355.1| BRCT domain-containing protein [Clostridium cellulovorans 743B]
 gi|302576579|gb|ADL50591.1| BRCT domain protein [Clostridium cellulovorans 743B]
          Length = 271

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 52/194 (26%), Gaps = 40/194 (20%)

Query: 2   ATLFIDFET--RSPIDLTKCGICKYAEDVCVI------------------LFAFGFDDHP 41
             + ID ET   S         C   E+  +I                   F F      
Sbjct: 3   KMILIDLETQDFSVTSGIYEVACLVVENYEIIDKLYLGKEIPDYKGKRNYGFGFYNISGD 62

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPIHRW 93
            E              KE L+     IVAHN  F+R  L     +         +   R 
Sbjct: 63  TEYI---------TKFKEFLKKYPYPIVAHNCPFDRKFLVYYQWITDDYLAYCSMRAIRM 113

Query: 94  ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
              ++ + +         V + +K ++    E    I +  K +    +   +K      
Sbjct: 114 ANKMLDSYALQNLVKHYEVADEVKHTAMSDIENVYKILKIVKPQIWLPVGTSSKSRS--- 170

Query: 154 WRLFGEYCKGDVTV 167
           +         D+ +
Sbjct: 171 YSKVKARALEDIDL 184


>gi|226952576|ref|ZP_03823040.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ATCC 27244]
 gi|226836656|gb|EEH69039.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
           [Acinetobacter sp. ATCC 27244]
          Length = 452

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 50/181 (27%), Gaps = 28/181 (15%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDDHPVE 43
             L +D ET        D              LT   I  Y      +  +        E
Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVDVHGITDE 284

Query: 44  LW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI--PIHRWICTL 97
              D      +   L   L      I+AHN+ F+   L        L +   +     TL
Sbjct: 285 FLQDKPKYAEIADALFAYL--KGAEIIAHNATFDMNFLDMEFKRVGLPLLSEVCEVTDTL 342

Query: 98  VLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
            LA++       +L A+    ++ ++       L+      + +  +         +A  
Sbjct: 343 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDIDALS 402

Query: 156 L 156
            
Sbjct: 403 Q 403


>gi|224025746|ref|ZP_03644112.1| hypothetical protein BACCOPRO_02487 [Bacteroides coprophilus DSM
           18228]
 gi|224018982|gb|EEF76980.1| hypothetical protein BACCOPRO_02487 [Bacteroides coprophilus DSM
           18228]
          Length = 1265

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/92 (7%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  +++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPIMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGKKNGHDPKVLEKIWADWEKFASYA 854


>gi|153001896|ref|YP_001367577.1| 3'-5' exonuclease [Shewanella baltica OS185]
 gi|151366514|gb|ABS09514.1| 3'-5' exonuclease [Shewanella baltica OS185]
          Length = 315

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 15/89 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKE 59
            L  D ETR           +  +   + L      D         H        Q LK 
Sbjct: 132 VLGFDTETR-------ASFERGVQHP-LSLIQIATAD--ACYL-FQHAILGEQFTQ-LKT 179

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDI 88
            LE+ ++  V      +   LK  + +++
Sbjct: 180 VLEDENILKVGVGLRSDAQALKRQWGINV 208


>gi|48477200|ref|YP_022906.1| DNA polymerase II [Picrophilus torridus DSM 9790]
 gi|48429848|gb|AAT42713.1| DNA polymerase delta catalytic subunit [Picrophilus torridus DSM
           9790]
          Length = 778

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 56/192 (29%), Gaps = 36/192 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDD--HPVELWDCVHDPVMPQVLKE 59
             L  D E      +    I        VI +A  F++      +    H   + +   E
Sbjct: 157 KILSFDVE----NSIKTKEIY-------VIGYAIYFNNKIETGSITGTEH--EILKKFNE 203

Query: 60  AL--ENTDVTIVAHNS-YFERTVLK---ACFNLD-------IPIHRWICTLVLARSNGLP 106
            +   + D+    +N   ++  +++      N+        +P  R +      +   L 
Sbjct: 204 LIINNDPDII-TGYNIDGYDLPLIEERMKYNNIKFGIGRDHLPPKRILD-----QYWRLH 257

Query: 107 SAL--KAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGD 164
             +   A     K+   K E    +       E         +           +YC  D
Sbjct: 258 GRVVSDAWWAVKKVVKPKHETLNYVARLLLNDEKENIDRINIESEWEAKKEDVIKYCIKD 317

Query: 165 VTVTREIFKRLE 176
             +  EI++++ 
Sbjct: 318 AYLALEIYRKIR 329


>gi|296333022|ref|ZP_06875479.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674874|ref|YP_003866546.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149873|gb|EFG90765.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413118|gb|ADM38237.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 954

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL-- 105
             + + +   L       VAHN +F+   +K         +P    + T+ L+R      
Sbjct: 96  EAVAEEVFHLL--DGAYFVAHNIHFDLGFVKYELHKAGFHLPDCEVLDTVELSRIVFPGF 153

Query: 106 -PSALKAVGEALKLSSQ 121
               L  + E L+L   
Sbjct: 154 EGYKLTELSEELQLRHD 170


>gi|294056543|ref|YP_003550201.1| 3'-5' exonuclease [Coraliomargarita akajimensis DSM 45221]
 gi|293615876|gb|ADE56031.1| 3'-5' exonuclease [Coraliomargarita akajimensis DSM 45221]
          Length = 211

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 48/182 (26%), Gaps = 37/182 (20%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L  D ETR      K G           L      D  V L+       + Q LK  LE
Sbjct: 55  HLGFDTETR---PTFKKGEYYPPA-----LIQLATADC-VYLFRISKSETL-QPLKAILE 104

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALK--AVGEALKLSS 120
           +  +         +   L+A  +                       L+   +   L   +
Sbjct: 105 SPQILKTGIGIKEDVRELRAMEDFQ-----------------PSGFLEITELTLKLGYEN 147

Query: 121 QKME--EGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           + +    G  L  R  K         +     +        Y   D  V+RE++ R +  
Sbjct: 148 RGLRPLTGLLLNGRISKAAQVSNWARQELDQKQI------RYAATDAWVSRELYLRAQQE 201

Query: 179 SS 180
             
Sbjct: 202 IE 203


>gi|262212055|gb|ACY35644.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 43/169 (25%), Gaps = 18/169 (10%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE R+L+          A                +   
Sbjct: 10  SRFRELSLPSPNQVMVGADLAGIELRMLSHF-------PARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRELVKTVTYAFLYGAGDEKIGHSYDKLLSSKAAEKKGKEIRQAHIEAIDGLDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTACERVKKAWRQK-------HSRV--SELW 521
                +   E        G   + +  +  +        +  +      
Sbjct: 123 LLEAIKKASERGFIKALDGR--KIIVDSPHKALNYCLQGNPAILAKRWM 169


>gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
 gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
          Length = 870

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 61/185 (32%), Gaps = 14/185 (7%)

Query: 50  DPVMPQVLKEALE-NTDVTIVAHNSYFERTVL-----KACFNLDIPIHRWICTLVLARSN 103
                +VLKE +E + D  IV HN  ++  +L     +           +  TL + R  
Sbjct: 567 GEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLG-KPKFKTFYDTLDIYRRF 625

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   L+ + +      +   +  + I    +      +  +  P   E   L  ++
Sbjct: 626 YPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGE-LLVRAINKKIIPTSMERMALMSKH 684

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            K    +++++ +  +   ++ +  + L   +   G+ +    A   N+        L  
Sbjct: 685 LKAFTAISKKLNELFQ--IAESKRPYELVACV-MNGFNIKSMYAGDENKEKLNRLRDLYA 741

Query: 221 ELESL 225
               L
Sbjct: 742 LFRDL 746


>gi|116515093|ref|YP_802722.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256947|gb|ABJ90629.1| DNA polymerase III, e subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 231

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 17/101 (16%)

Query: 29  CVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFN 85
            +   +  F  +            + + +   ++N+++ +  HNS F+ + L       N
Sbjct: 64  KIHGISESFLSNK------PTFKDIYKEIFNFIKNSEIIV--HNSNFDISFLDYEFFLLN 115

Query: 86  LDIPIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSS 120
           + I   +       TL +AR         L A+    K+++
Sbjct: 116 IGINKIKTFSTITDTLFIARKLFPGKKNNLDALCARYKITN 156


>gi|182637532|ref|YP_001828703.1| putative helicase [Lactococcus phage 1706]
 gi|157884971|gb|ABV91262.1| putative helicase [Lactococcus phage 1706]
          Length = 1317

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 51/165 (30%), Gaps = 16/165 (9%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHN- 72
           +D              ++L  +     P  +W       + ++++  L       V  N 
Sbjct: 703 VDDKDITFYDIEVFPNLLLICWKKYGQPGVIWYNPTPEKITELMRHNL-------VGFNN 755

Query: 73  SYFERTVLKACFNLDIPIHRWICTLV-----LARSNGLPSALKAVGEALKLSSQKMEEGK 127
             ++  ++         +  +  +       ++        + +  +  ++   K    K
Sbjct: 756 RKYDNHIIYNRMLGASNLDMYHQSQQIINQQMSAMMQPAYGI-SYADLYEMMDIKQSLKK 814

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             I    K +  E  +D+  P     W    EYC  DV  T E+F
Sbjct: 815 WEIELGIKHDELEFPWDQPLPED--EWARCAEYCMNDVIATEELF 857


>gi|27468497|ref|NP_765134.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867358|ref|YP_189001.1| exonuclease [Staphylococcus epidermidis RP62A]
 gi|251809901|ref|ZP_04824374.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874556|ref|ZP_06283441.1| exonuclease [Staphylococcus epidermidis SK135]
 gi|293367792|ref|ZP_06614441.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316044|gb|AAO05178.1|AE016749_124 DNA polymerase III, alpha chain PolC-type [Staphylococcus
           epidermidis ATCC 12228]
 gi|57638016|gb|AAW54804.1| exonuclease [Staphylococcus epidermidis RP62A]
 gi|251806566|gb|EES59223.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296695|gb|EFA89204.1| exonuclease [Staphylococcus epidermidis SK135]
 gi|291318131|gb|EFE58528.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726906|gb|EGG63364.1| exonuclease [Staphylococcus epidermidis VCU144]
 gi|329734711|gb|EGG71017.1| exonuclease [Staphylococcus epidermidis VCU045]
 gi|329734804|gb|EGG71109.1| exonuclease [Staphylococcus epidermidis VCU028]
          Length = 184

 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 19/135 (14%)

Query: 4   LFIDFETR-------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           + +DFET          + + K    +  E    ++  F +          +H   +   
Sbjct: 7   VALDFETANSKRTSICSVGMVKVIDNQITESFHTLVNPFDYFTETNITVHGIHPEDVQDA 66

Query: 57  -----LKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT-LVLARSNG- 104
                +   +      + +VAHN+ F+  VL       N+D P   + C+  +  R+   
Sbjct: 67  PGFKHVYPYMLKFIDQLPVVAHNAAFDMNVLHQSLKSHNIDTPSLTYFCSYQLAKRTINA 126

Query: 105 LPSALKAVGEALKLS 119
               LK +     L 
Sbjct: 127 YRYGLKHLMNHYHLD 141


>gi|291617685|ref|YP_003520427.1| Rnd [Pantoea ananatis LMG 20103]
 gi|291152715|gb|ADD77299.1| Rnd [Pantoea ananatis LMG 20103]
          Length = 373

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 40/200 (20%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T  P    + G+ +  +   ++L     D  PV  W             
Sbjct: 25  VALDTEFVRTRTYYP----QLGLIQLFDGEQLVLI----DPLPVRDWS---------PFI 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L +T VT   H    +  V    F   +     I T +LA  +G P +          
Sbjct: 68  ELLTDTRVTKFLHAGGEDLEVFLHRF--AVLPQPMIDTQILAAFSGQPLSWGFASMVAHF 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
           +  ++++ +       +  T                    +Y   DV     I  +L   
Sbjct: 126 TQVELDKSEARTDWLARPLT----------------ERQCQYAAADVHYLLPIAHQLMQQ 169

Query: 179 SSKEQELWYLDQTINDRGYC 198
             +   +        +    
Sbjct: 170 VEQAGNMAAALSECENLCQR 189


>gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
 gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
          Length = 874

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 55/201 (27%), Gaps = 24/201 (11%)

Query: 49  HDPVMPQVLKEALE-NTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLVL---A 100
                  VL+E         IV HN  ++ ++    L       +   R+  TL +    
Sbjct: 575 EGEEPEAVLREFCAFAEGAVIVGHNVTYDLSILGSELARLGLPPLSYQRYYDTLDIFRRF 634

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
             N     L+ +GE  K+S +   +   +       E      ++N   H    R F   
Sbjct: 635 YPNLPNHKLEYLGEFCKVSHRSTHD--AMDDVCATAEILTYAIEKNIRPHVGERREFMA- 691

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWY----------LDQTINDRGYCVDVALAHTLNQI 210
              DV              ++    W           +D     RG          L  +
Sbjct: 692 KWQDVFAELADCVSGFRHEAERMRPWQLLAKIVVDISIDAYYRRRGE---EQRIENLRDL 748

Query: 211 VDVERTKLDQELESLTYGLVS 231
               R   ++E+  L      
Sbjct: 749 FRQARAMDEKEVRPLDALTRF 769


>gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
 gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
          Length = 459

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 55/184 (29%), Gaps = 34/184 (18%)

Query: 2   ATLFIDFETRS----PID--------------LTKCGICKYAEDVCVILFAFGFDDHPVE 43
             L +D ET        D              LT   I  Y      +      D   + 
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVG-----DSENIH 286

Query: 44  LW--DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIP----IHRWI 94
               D + D  +   + + L +      I+AHN+ F+   L      + +P    +    
Sbjct: 287 GISDDFLKDKPLYADIADTLFDYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVT 346

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            TL LA++       +L A+    ++ ++       L+      + +  +         +
Sbjct: 347 DTLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDID 406

Query: 153 AWRL 156
           A   
Sbjct: 407 ALSQ 410


>gi|282879684|ref|ZP_06288414.1| hypothetical protein HMPREF9019_2159 [Prevotella timonensis CRIS
           5C-B1]
 gi|281306353|gb|EFA98383.1| hypothetical protein HMPREF9019_2159 [Prevotella timonensis CRIS
           5C-B1]
          Length = 426

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 41  PVELWDCVHDPVMPQVLKEALENT---DVTIVAH--NSYFERTVLKACFNLDIPIHRWIC 95
           P E  + +    +P+ +KEAL       V  V H  N  F+   LK      I   R + 
Sbjct: 252 PSEYRERIQKENIPEEMKEALLKPTTDSVAFVNHSINGDFDIP-LKWQSKGTIKYIRILD 310

Query: 96  T---LVLARSNGLPSALKAVGEALKLSSQKMEE 125
           T   ++ +        L  +GE L         
Sbjct: 311 TLYDMITSSHV---YYLDELGEDLHNDLLYYYL 340


>gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
 gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus mitis SK321]
          Length = 1463

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 EQVLQEFQEFCKD--TVLVAHNATFDVGFMNANYERHGLPRISQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|290996841|ref|XP_002680990.1| predicted protein [Naegleria gruberi]
 gi|284094613|gb|EFC48246.1| predicted protein [Naegleria gruberi]
          Length = 175

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 46 DCVHDPVMPQVLKEALENTDVTIVAHNS-YFERTVLKACF 84
          DC+      Q +KE + N DV ++AHN   F+  VLK  F
Sbjct: 36 DCLEFNQHIQRIKEFIGNDDVLLIAHNGKKFDERVLKYHF 75


>gi|113969320|ref|YP_733113.1| 3'-5' exonuclease [Shewanella sp. MR-4]
 gi|113884004|gb|ABI38056.1| 3'-5' exonuclease [Shewanella sp. MR-4]
          Length = 299

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 52/178 (29%), Gaps = 25/178 (14%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L  D ETR+     + G+        + L      D    L+           LK  LE
Sbjct: 118 VLGFDTETRASF---EPGVQHP-----LSLVQLATSD-TCYLFQRAVLGERLAELKPLLE 168

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           N  +  V      +   LK  +++ +                L  A+  +G   ++ +++
Sbjct: 169 NERILKVGIGLRGDGQALKRDWDIQVSPR-----------LDLNWAMAQLGAGKEMGTRQ 217

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           +     L  R  K +       +  P  +   +    Y   D       F +L     
Sbjct: 218 LVA-ALLHKRIDKPKKITLSNWQQVPLSQAQIQ----YAALDTLAANLCFWQLIDKLQ 270


>gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
 gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
           SCB49]
          Length = 460

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 43/151 (28%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV----------------E 43
           M    +D ET            KY E+  +   A + FD   V                 
Sbjct: 1   MNYAILDIETTG---------GKYNEEG-ITEIAIYRFDGEKVVDQFCSLVNPERPIQPF 50

Query: 44  LWDCV--------HDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKA---CFNLDIPIH 91
           + +          + P   +V K  +E   D  +VAHN+ F+  +L         D  + 
Sbjct: 51  VVNLTGINSDMLKNAPKFYEVAKRIVEITKDCILVAHNAQFDNRILTTEFDRLGYDFDLE 110

Query: 92  RWICTLVLARSNG---LPSALKAVGEALKLS 119
              CT+ L++         +L  +  +L + 
Sbjct: 111 TL-CTVELSKKLIPDMPSYSLGKLVRSLGIP 140


>gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1]
 gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit
           family [Aromatoleum aromaticum EbN1]
          Length = 478

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALKL 118
           +   VAHN+ F+   ++       +D    + +CT+ L+R          L A+     L
Sbjct: 95  ERVFVAHNARFDHGFIRAAFRRLGVDFRP-KVLCTVRLSRRLYPQERRHNLDALIARHGL 153

Query: 119 S 119
            
Sbjct: 154 E 154


>gi|327313911|ref|YP_004329348.1| exonuclease [Prevotella denticola F0289]
 gi|326945021|gb|AEA20906.1| exonuclease [Prevotella denticola F0289]
          Length = 163

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLPSA 108
            +   ++  +E   + +VAHN+ F++  L+ACF    +D P + ++ TL  AR      +
Sbjct: 70  KVWARIEPLIE--GLPLVAHNAPFDKGCLRACFQTYRMDYPDYEFLDTLRAARRVFPRLS 127

Query: 109 ---LKAVGEALKLS 119
              L  V  A    
Sbjct: 128 NHQLHTVSAACGYD 141


>gi|319900813|ref|YP_004160541.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
 gi|319415844|gb|ADV42955.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
           P 36-108]
          Length = 165

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 11/82 (13%)

Query: 46  DCVHDPVMPQVLKEALENTDV---TIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
           D    PV P V +E   +  +    +VAHN  F+ + LK     + +D P + + CTL  
Sbjct: 61  DTAQAPVFPDVWREI--SPRIEGLPLVAHNKAFDESCLKAVFRTYGMDYPDYDFYCTLQA 118

Query: 100 ARSNG---LPSALKAVGEALKL 118
           +R          L  V      
Sbjct: 119 SRRVIKGLPDYQLHTVASRCGY 140


>gi|304396155|ref|ZP_07378037.1| ribonuclease D [Pantoea sp. aB]
 gi|304356524|gb|EFM20889.1| ribonuclease D [Pantoea sp. aB]
          Length = 373

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 67/235 (28%), Gaps = 44/235 (18%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T  P    + G+ +  +D  ++L        P+ + D            
Sbjct: 25  VALDTEFVRTRTYYP----QLGLIQLFDDHQLVLI------DPLNIRDWSP-------FI 67

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L +T VT   H    +  V    F   +     I T +LA  +G P +          
Sbjct: 68  ALLTDTRVTKFLHAGGEDLEVFLHRFG--VLPTPMIDTQILAAFSGQPLSWGFASMVAHF 125

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT----VTREIFKR 174
           +  ++++ +       +  T                +   EY   DV     + R++   
Sbjct: 126 TQVELDKSESRTDWLARPLT----------------QRQCEYAAADVHYLLPIARQLMIN 169

Query: 175 LEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGL 229
            E   +    L   D     R   +    A          R +    L+ L    
Sbjct: 170 TEEAGNMAAALSECDNLCQRRLDSLSPDEAWRDITNAWQLRPRQLAALQRLAAWR 224


>gi|225573157|ref|ZP_03781912.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039486|gb|EEG49732.1| hypothetical protein RUMHYD_01348 [Blautia hydrogenotrophica DSM
           10507]
          Length = 234

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 56/222 (25%), Gaps = 59/222 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVE------------------ 43
            +  D ET               E   +I   A    +  V                   
Sbjct: 5   YVAFDVETTGLDP----------EQNEIIEIGALKVRNGKVVERFMKFIRPTEEISQTIT 54

Query: 44  ---------LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA-CFNLDIP-IHR 92
                    + +      +     +        ++ HN  F+ + +K     + +  + +
Sbjct: 55  DLTGITNEMVVNAQSREQVIPEFLDFCRED--ILIGHNVAFDYSFMKMGALAVGLDFVSQ 112

Query: 93  WICTLVLAR-SNG--LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
            I TL +AR  +G     +L+ +    ++ ++          R            +   +
Sbjct: 113 GIDTLKIARKVHGDLESKSLERLCAYYQIENKAAH-------RAYHDALATAKLYQTLAH 165

Query: 150 HREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQT 191
           + E            V    E++ + + +    +        
Sbjct: 166 YFEEKEPA-------VFQPMELYYKQKKILPASKRQVEFLTK 200


>gi|330882898|gb|EGH17047.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 259

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 12/79 (15%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPIHRWICTLVLARSN 103
            +     E +      ++ HN+ F+   +   F L               + TL++AR  
Sbjct: 79  EVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSILDTLMMARER 136

Query: 104 GLPS--ALKAVGEALKLSS 120
                 +L A+ +   + +
Sbjct: 137 HPGQRNSLDALCKRYGVDN 155


>gi|320325171|gb|EFW81239.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 259

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 12/79 (15%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPIHRWICTLVLARSN 103
            +     E +      ++ HN+ F+   +   F L               + TL++AR  
Sbjct: 79  EVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSILDTLMMARER 136

Query: 104 GLPS--ALKAVGEALKLSS 120
                 +L A+ +   + +
Sbjct: 137 HPGQRNSLDALCKRYGVDN 155


>gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
           2_A_57_CT2]
 gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
           2_A_57_CT2]
          Length = 933

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 39/151 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHDPVMPQVLKE 59
             + +D ET          I ++A        A   ++  +  E    V+         E
Sbjct: 4   KYVVVDLETTGNAPKKGDKIIQFA--------AVVIENGKITEEYSSLVNPEQSIPPFIE 55

Query: 60  AL--------EN--------TDVT-------IVAHNSYFERTVLKACF---NLDIPIHRW 93
            L        EN          V         VAHN  F+ + L+        +      
Sbjct: 56  ELTGLSDEMVENAPLFSEIAPKVLTLLEGAYFVAHNVLFDLSFLQEELIEAGYNGFYGPV 115

Query: 94  ICTLVLARSNGLPS---ALKAVGEALKLSSQ 121
           + T+ +AR     +    L  +     L+ +
Sbjct: 116 LDTVEMARILFPTADSFKLSDLALREGLNHE 146


>gi|298241729|ref|ZP_06965536.1| 3'-5' exonuclease [Ktedonobacter racemifer DSM 44963]
 gi|297554783|gb|EFH88647.1| 3'-5' exonuclease [Ktedonobacter racemifer DSM 44963]
          Length = 205

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 19/81 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV------- 56
           L +D ET         GI ++ +   V+    G     V + D      +P         
Sbjct: 136 LVVDLETT--------GIHEHLD--RVVAITLG-KPGKVAILDMRPYYGLPAEEQATWRE 184

Query: 57  -LKEALENTDVTIVAHNSYFE 76
            L        +T + HN  F+
Sbjct: 185 VLHYLFHRDGITWIGHNLKFD 205


>gi|271502076|ref|YP_003335102.1| DNA-directed DNA polymerase [Dickeya dadantii Ech586]
 gi|270345631|gb|ACZ78396.1| DNA-directed DNA polymerase [Dickeya dadantii Ech586]
          Length = 790

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 27/200 (13%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF----GFDDHPVELWDCVHDPVMPQVL 57
            T+ +D ET    +L   G+        V +         D   + L      P + + L
Sbjct: 156 KTVSLDIETSRHGELYCIGLEG-CGQRQVFMLGPENGNRDDAGDLTLEYVASRPQLLEKL 214

Query: 58  KEALE--NTDVTIVAHNS-YFERTVLKACF-NLDIPIHRWICTLVLARS-NGLPSALKAV 112
            + L   + DV  +  N   F+  VL+       IP+        L    +G        
Sbjct: 215 NQWLHTYDPDVI-IGWNLVQFDLRVLQQHAERYRIPLRFGRDGQELEWREHGYRQGHFFA 273

Query: 113 GEALKLSSQKMEEGKEL--------IARFCKGETHECLYDRNKPNHREAWRL-------- 156
               +L    +E  K          +    +    E     N     E            
Sbjct: 274 SAPGRLIVDGIEALKSATWHFASFSLEFVAQSLLGEGKASDNPYQRLEEIEQRFQQDKPA 333

Query: 157 FGEYCKGDVTVTREIFKRLE 176
              Y   D  +   IF++  
Sbjct: 334 LARYNLKDCELVTRIFEKTH 353


>gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH
           391-98]
          Length = 299

 Score = 39.3 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLA-- 100
           D      +  +    L N  +  VAHN+ F+   LK+    F L  P ++ I T++LA  
Sbjct: 71  DAPTVQEVLPLFLAFLGNDTI--VAHNASFDMRFLKSNMSRFQLGEPNNKVIDTVLLAKK 128

Query: 101 RS-NGLPSALKAVGEALKL 118
              +     L+ +   L +
Sbjct: 129 YMKHAPNFKLETLKRMLGI 147


>gi|258623764|ref|ZP_05718722.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603]
 gi|258583961|gb|EEW08752.1| putative DNA polymerase III, epsilon subunit [Vibrio mimicus VM603]
          Length = 209

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 48/188 (25%), Gaps = 56/188 (29%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELWDCVHD 50
            + +D ET S       L      K  ++         V L A    D   V +    H 
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLCAPQSLDSGSVRIHKIRHQ 89

Query: 51  P--------VMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIP--------- 89
                         L + +   +  +V ++  +++T+L    +      +P         
Sbjct: 90  DLQDGLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQI 147

Query: 90  ---------IHRWICTLVLARSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCKGETH 139
                     + +              +L A+   L L    K +  ++ IA        
Sbjct: 148 YHDKLEKHLPNAYFD-----------LSLDAICRHLDLPLQDKHDALQDAIAAALVFVRL 196

Query: 140 ECLYDRNK 147
                   
Sbjct: 197 TKGDLPQF 204


>gi|211956451|ref|YP_002302517.1| DNAP [Bacillus phage AP50]
 gi|171706095|gb|ACB54904.1| DNAP [Bacillus phage AP50]
          Length = 731

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 73/263 (27%), Gaps = 48/263 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ETR                  V LF     D          D ++   L E  
Sbjct: 14  KLLTLDTETRGLTGNV----------FRVGLF-----DGTNYYKSNTFDEIL--DLFEQY 56

Query: 62  ENTDVTIVAHNSYFER-----TVLKA-----CFNLDIPIHRWI---CTLVLA-RSNGLPS 107
           ++ +  +  HN  F+      T+ K        ++ I  +       +++L      LP 
Sbjct: 57  KDYECHVYVHNLDFDLAKIATTLFKRDRVRFAKSIFINGNVVTLHSDSMILHDSLRLLPG 116

Query: 108 ALKAVGEALKLSSQKMEEGKELIAR--FCKGETHECLYDRN------KPNHREAWRLFGE 159
           +L+ + +   L+    ++  E+I    +   +     +D+         N         E
Sbjct: 117 SLEKLCKDFGLTDNAKKDLSEVIKEQGYAVYKKDGVTFDKKKSLGNYFENVPADDPTLNE 176

Query: 160 YCKGDVTVTREIFKRLEPLSSKEQELWYLD---------QTINDRGYCVDVALAHTLNQI 210
           Y + D     EI   +  +++   E   +                    D    H     
Sbjct: 177 YLEFDCRSLYEILTIVMDIANIGLETLVMCPTTASLAMRVYKEQYREQYDKVATHFYMGE 236

Query: 211 VDVERTKLDQELESLTYGLVSSS 233
                 +  ++        V + 
Sbjct: 237 WGQFLEEHVRQSYYGGRTEVFTP 259


>gi|50289609|ref|XP_447236.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526545|emb|CAG60169.1| unnamed protein product [Candida glabrata]
          Length = 861

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 13/159 (8%)

Query: 112 VGEALKLSSQKMEEGKELIARFCKGE---THECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           V  A++   + +    E I    +            R  P   E W+L  +Y   D    
Sbjct: 264 VANAIRFQPKSVALWLEGIKYEEQPANKFRVIQKALREIPAEEEIWKLAVKYNPNDYDS- 322

Query: 169 REIFKRLEPLSSKEQELWYLDQT--INDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
             I K+           W +       D    ++  +     QI       +++E+    
Sbjct: 323 LRICKKALEFIPTSFYFWAILMKEPYEDVMNTLEKVITQNPKQIDLKVYKLMNEEIHK-- 380

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS 265
                    + + K+ +  E G++++D+ ++   + L  
Sbjct: 381 -----KIDSVSQCKSVIIKELGINMKDMDKSVVTKWLDK 414


>gi|116629923|ref|YP_815095.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus gasseri ATCC 33323]
 gi|282851483|ref|ZP_06260848.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|311110442|ref|ZP_07711839.1| exonuclease [Lactobacillus gasseri MV-22]
 gi|116095505|gb|ABJ60657.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
           [Lactobacillus gasseri ATCC 33323]
 gi|282557451|gb|EFB63048.1| exonuclease [Lactobacillus gasseri 224-1]
 gi|311065596|gb|EFQ45936.1| exonuclease [Lactobacillus gasseri MV-22]
          Length = 177

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI-----LF--AFGFDDHPVELW-----DC 47
           M    +DFET +    + C +      +  ++     +      FD   + +      D 
Sbjct: 1   MNFTAMDFETANSHPESACSLALVMVRNNEIVDRFYTVINPQMPFDGRNIRIHGITAEDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHN+ F+  V++     +N+  P +  I TL  +++
Sbjct: 61  KNAPTMAEVWPKIKKLYQPGMLVAAHNARFDCRVMEKSLARYNIPAPHYFAIDTLATSKA 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V EAL ++
Sbjct: 121 FEPNLPNHKLDTVSEALDIN 140


>gi|226308478|ref|YP_002768438.1| exonuclease [Rhodococcus erythropolis PR4]
 gi|226187595|dbj|BAH35699.1| putative exonuclease [Rhodococcus erythropolis PR4]
          Length = 241

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 52/208 (25%), Gaps = 61/208 (29%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCVHDPVMP----- 54
               D ET      T            ++       D        W       +P     
Sbjct: 24  ICAFDLETTGRDPST----------ARIVSACVAVIDGSNVETRTWLLDPGVDIPADASA 73

Query: 55  --------------------QVLKEALENT---DVTIVAHNSYFERTVLKACFNLDIP-- 89
                               + +++AL N+   D  +VA N+ ++ TV+     L I   
Sbjct: 74  IHGISTEYAARHGQNYAEGYEEIRDALHNSWARDHAVVAFNASYDLTVM-HAEGLRIGKP 132

Query: 90  ---IHRWICTLVLARSNG----LPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                  I   V+ R+          L AV E   +S +   E +              +
Sbjct: 133 AFVPGLVIDPYVIDRAMDTFRKGKRTLAAVCEHYGISLESAHEAEADAKAAAALARELAV 192

Query: 143 Y----------DRNKPNHREAWRLFGEY 160
                            H E  R F EY
Sbjct: 193 RFPDLLGLDLMVDQADWHAERQRDFAEY 220


>gi|332365112|gb|EGJ42875.1| DNA polymerase III PolC [Streptococcus sanguinis SK1059]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|168702572|ref|ZP_02734849.1| exonuclease [Gemmata obscuriglobus UQM 2246]
          Length = 183

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 23/146 (15%)

Query: 4   LFIDFET--RSPIDLTKCGICKYAEDV----CVILFA-----FGFDDHPVELWDC----V 48
           + IDFET    P      G+ +   +       +L         F +     W       
Sbjct: 19  VAIDFETADHGPDSACAIGLARVENNKVVRREAVLIRPPRPRVMFTEVHGITWPMVQNAS 78

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLAR---S 102
               + + L   +E     + AHN+ F+R VL AC     LD+P   ++CT+ +AR   +
Sbjct: 79  PFGDVWRGLLPIIE-GAKFLAAHNASFDRRVLHACCIAAGLDVPALPFVCTVQIARRKWA 137

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKE 128
              P+ L AV   L +       G +
Sbjct: 138 L-KPANLPAVCRRLGIGLIHHHAGSD 162


>gi|149369442|ref|ZP_01889294.1| polysaccharide biosynthesis protein [unidentified eubacterium
           SCB49]
 gi|149356869|gb|EDM45424.1| polysaccharide biosynthesis protein [unidentified eubacterium
           SCB49]
          Length = 237

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 69/224 (30%)

Query: 3   TLFIDFET------RSPIDLTKCGI----------------------CKYAEDVCVILFA 34
            LF+D ET       S +D T   +                        +AE   ++  +
Sbjct: 10  ILFLDIETVPQHEKYSDLDQTTKALWEQKTKYQRKEEFTPEAFYDRAGIWAEFGIIVCIS 69

Query: 35  FGF----DDHPVELWDCVHDPV--MPQVLKEALE----NTDVTIVAHNSY-FERTVLKAC 83
            G+     +         H     + +  K  +E     +   + AHN   F+   +   
Sbjct: 70  VGYFKMQGETRQFRTTTFHGEEAVLLKEFKNLIETHFNKSQHVLCAHNGKEFDFPYIARR 129

Query: 84  F---NLDIP-------IHRWI----CTLVLARSNGLP--SALKAVGEALKLSSQKMEEGK 127
                +D+P          W      TL L +       ++LK +   L + S K     
Sbjct: 130 MIIHGIDLPFKLNLFGKKPWEVPHLDTLELWKFGDYKTFTSLKLMAHVLGIPSPKD---- 185

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                       +    R+   +         YC+ D     +I
Sbjct: 186 ----------DIDGSEVRDVFYNDNDIDRIVIYCEKDTVTVAQI 219


>gi|84488969|ref|YP_447201.1| 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
 gi|84372288|gb|ABC56558.1| predicted 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
          Length = 445

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 47  CVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLA 100
               P +P+    +   L N  +  V HN  ++  VL      ++L++P   + CTL  +
Sbjct: 61  IKQSPTLPEYWSEISSWLSNNVI--VGHNITYDLRVLTKSLQRYDLEVPEFNYCCTLTQS 118

Query: 101 RS-NGLP-SALKAVGEALKL 118
           R    LP   L+ + + L +
Sbjct: 119 RKNLDLPSYKLENIAKKLHI 138


>gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +       ++P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHNLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|291238462|ref|XP_002739148.1| PREDICTED: kelch-like 11-like [Saccoglossus kowalevskii]
          Length = 595

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 63/227 (27%), Gaps = 37/227 (16%)

Query: 48  VHDPVMPQVLKEA-LENTDVTIVAH--NSYFERTVLKACFNLDIPIHRWICTLVLARSNG 104
                + + L++  L++    ++    N      V KA  N+      +  T+  +   G
Sbjct: 16  DQGNRILEKLQQQRLDDKYCDMILQVEN-----KVFKAHRNVLAAWSPYFDTMCYS---G 67

Query: 105 LPSALKAVGEALKLSSQKMEEGKELI--ARFCKGETHECLYDRNKPNHREAWRLFGEYCK 162
           +   L+ +      ++  MEE    I     C    +     R   +         EYC 
Sbjct: 68  MEEGLRNMATIECTTADAMEEILNYIYTGEICISSDNVEPILRGADHFLIP--ALREYCC 125

Query: 163 G------DVTVTR------------EIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA 204
                  D +               E++ R         +  ++    ND    + V   
Sbjct: 126 EFLSKKMDASNCLVVKQLADLYRFGELYNRSSEF--VRNQFMHVITDGNDDLMALTVDQL 183

Query: 205 HTLNQIVDVERTKLDQELESLT-YGLVSSSRCLEKLKTWLFLETGLH 250
             L    +  R + ++ +  L            ++    L     L 
Sbjct: 184 IDLIT-DEKLRVEKEESIYELVLKWTKFDLASRKEYFPELLSHVRLP 229


>gi|260767799|ref|ZP_05876734.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260617308|gb|EEX42492.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
          Length = 246

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 11/98 (11%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIH------RWIC 95
            L D      + +   + +      +VAHN+ F+   +   F  L IP        +   
Sbjct: 77  FLVDKPEYKDVHEEFLDFIR--GAELVAHNAPFDVGFMDYEFSKLSIPTAKTDELCKVTD 134

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           TL +A+         L  + +   + +        L+ 
Sbjct: 135 TLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLD 172


>gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367]
 gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           brevis ATCC 367]
          Length = 1445

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 10/83 (12%)

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVL 99
           D V      + + +       D  IV HN  F+   +          +I  +  I TL L
Sbjct: 482 DMVAGSKSEEEVFKLFREFCGDAIIVGHNVTFDVGFMNTGYQRHGMAEIS-NPIIDTLTL 540

Query: 100 ARSNGL---PSALKAVGEALKLS 119
           AR          L  + +   +S
Sbjct: 541 ARFLYPTLKSYRLNTLAKRFHVS 563


>gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|304383785|ref|ZP_07366243.1| DNA-directed DNA polymerase III alpha subunit [Prevotella marshii
           DSM 16973]
 gi|304335041|gb|EFM01313.1| DNA-directed DNA polymerase III alpha subunit [Prevotella marshii
           DSM 16973]
          Length = 1238

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 13/96 (13%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSAL-KAVGEALKLSS-QKMEE 125
             ++   ++      + + +   +    ++L+R            + +A+      KM  
Sbjct: 735 IKYDLPCMEKYLKDTYGITVYQEQV---MLLSRQLANFTRGQSDTLRKAMGKKQIDKMNH 791

Query: 126 GKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            + L   F +G               E W+ F  Y 
Sbjct: 792 LEGL---FYEGGAKNGYPKEVLSKIWEDWKKFASYA 824


>gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 1421

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 21/137 (15%)

Query: 4   LFIDFETRS----PIDLTKCGICKYAEDVCVILFA------FGFDDHPVELW----DCVH 49
           +  D ET        ++T+ G  K  + V V  F+          D  VEL     D V 
Sbjct: 407 VVFDIETTGFSPQVDEITEIGAVKIVDGVIVDRFSQLVNPMIKIPDRVVELTGISNDFVK 466

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA-CFNLDIPIH-RWICTLVLARSNGL 105
           D      +     +   +  +VAHN+ F+ + ++      ++  +   + TL LAR+   
Sbjct: 467 DEPTIDKVIVDFNDFCKNSVLVAHNAGFDISFIRRDMLKYNLSFNFTVLDTLSLARAIIK 526

Query: 106 P---SALKAVGEALKLS 119
                 L A+ + L +S
Sbjct: 527 DIKRFNLTALSKKLGVS 543


>gi|261820459|ref|YP_003258565.1| DNA polymerase III subunit epsilon [Pectobacterium wasabiae WPP163]
 gi|261604472|gb|ACX86958.1| DNA polymerase III, epsilon subunit [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score = 39.3 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHKIIEIG-AVEVINRRLTGRHFHVYIKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-----LKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPI 90
                  + D  +        + +   +      +V HN+ F+   +       N D+P 
Sbjct: 61  EAYNIHGISDEFLADKPTYADIADDFLDFIRGAELVIHNATFDIGFMDYEFRLLNRDLPK 120

Query: 91  HRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                    +L +AR        +L A+ +   + + K      L+ 
Sbjct: 121 TETFCKITDSLFMARKIFPGKRNSLDALCDRYLIDNSKRTLHGALLD 167


>gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405]
 gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678]
 gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
 gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|307565570|ref|ZP_07628050.1| DNA polymerase III, alpha subunit [Prevotella amnii CRIS 21A-A]
 gi|307345729|gb|EFN91086.1| DNA polymerase III, alpha subunit [Prevotella amnii CRIS 21A-A]
          Length = 1241

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/115 (8%), Positives = 33/115 (28%), Gaps = 14/115 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLP 106
             +P  +K    +  +        ++   ++      + + +   +    ++L+R     
Sbjct: 720 DYIPDFIKRK-NDPSLV------QYDIPCMEKYLKDTYGITVYQEQV---MLLSRQLANF 769

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           +  ++      +  +K      +  +F K         +        W  F  Y 
Sbjct: 770 TRGESDALRKAMGKKKKNIVDAMKPKFIKQGQENGHDPKILEKIWSDWEKFASYA 824


>gi|296101815|ref|YP_003611961.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056274|gb|ADF61012.1| exodeoxyribonuclease X [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 220

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
           VAHN+ F+R VL            WICT+ LAR          +   
Sbjct: 78  VAHNASFDRRVL------PEMPGEWICTMKLARRLWPGIKYSNMALY 118


>gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
 gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
          Length = 307

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/303 (10%), Positives = 91/303 (30%), Gaps = 49/303 (16%)

Query: 2   ATLFIDFETRSP----IDLTKCGICKYAEDVCVI-----LF--AFGFDDHPVELWDCVHD 50
               +D ET        ++ + GI +   +  ++     L   +   D     L    +D
Sbjct: 21  DYCVLDTETTGLSAYYDEIIEIGILR-VRNNEIVDRYDQLIKPSIEVDGFITALTGITND 79

Query: 51  --PVMPQ------VLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
               MP        +   + + D+ +  HN+ F+   L   F   +  ++++ T+  AR 
Sbjct: 80  MLEDMPSISSVKNDVLSFI-SEDIIL-GHNTSFDMRFLNEGFKEQLS-NQYMDTMQFARK 136

Query: 103 NGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    L  + + L L + +     + IA             +   +  ++  +   
Sbjct: 137 LYPELKHHRLSDLTDYLGLHNNEHRALADCIA------------TKELYDAVKSRMVEKN 184

Query: 160 YCKGDVTVTRE-IFKRLEPLSSKEQELWYLDQT-INDRGYCVDVALAHTLNQIVDVERTK 217
               D+ +T E    +   + + + +   +D+       + V       + +    +   
Sbjct: 185 LAIEDLWITGESHGGKGIDIKAIKPDEVVVDKDGFFYNRHVVFTGKLEKMLRKDAQQIVV 244

Query: 218 LDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLE-DLTETTCQRVLSSNKKLTPQAIQV 276
                     G V  +   ++    +  +   +      +++  +     K        +
Sbjct: 245 NL--------GGVLDNSVTKQTNYLILGDNDYNAILKGDKSSKHKKAEKLKIEGQDIEII 296

Query: 277 FNN 279
             +
Sbjct: 297 DEH 299


>gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
 gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
          Length = 1451

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 38/140 (27%), Gaps = 24/140 (17%)

Query: 2   ATLFIDFETRSP---IDLTKCGICKYAEDVCV-----------ILFAFGFDD----HPVE 43
             +  D ET       D           +  +                   +    +   
Sbjct: 433 DYISFDLETTGLSAANDRITEIGAVRIHNGEITDVFNTFVNPERPIPAKITELTGINDSM 492

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIHR-WICT--LVL 99
           + D   +    +   E      V + AHN+ F+ + +       ++     ++ T  +  
Sbjct: 493 VIDAPKEKEAVEAFLEFCGKEPVLL-AHNAPFDTSFIQAVAARHNLDFSNTYLDTVPMCR 551

Query: 100 ARSNG-LPSALKAVGEALKL 118
           A   G     L  V + LKL
Sbjct: 552 AMLPGIKNHKLDTVAKHLKL 571


>gi|94500848|ref|ZP_01307374.1| ribonuclease D [Oceanobacter sp. RED65]
 gi|94426967|gb|EAT11949.1| ribonuclease D [Oceanobacter sp. RED65]
          Length = 382

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 46/179 (25%), Gaps = 32/179 (17%)

Query: 28  VCVILFAFGFDDHPVELWD---------CVHDPVMPQVLKEALENTDVTIVAHNSY--FE 76
             + L     D     L D               +   L E L N +V  V H+    F+
Sbjct: 37  PKLALIQIN-DGSETYLVDPVRINRAHRGEPREEVWGPLIEVLSNQNVVKVLHSPSEDFD 95

Query: 77  RTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKG 136
                   NL +     I T   A                  S   +   ++L+ +    
Sbjct: 96  ----AFYSNLGVVPSPIIDTQWAAAM---------------ASIDGIMGYQKLVKQLLDI 136

Query: 137 ETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDR 195
           +  +     +             Y   DV    EI KRLE     +    +L +     
Sbjct: 137 DLEKGATRSDWLQRPLTDEQ-IHYAADDVEHLLEITKRLETQLVTQGRWTWLLEDCERM 194


>gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217]
 gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217]
          Length = 688

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 69  VAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           VAHN+ F+   L+            +  +CT++++           L A+ +   +
Sbjct: 579 VAHNAPFDLAFLRLKEKVIGRRFD-NPVLCTVLMSAGLFDHSGQHTLDALCDRFGI 633


>gi|328474397|gb|EGF45202.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 240

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 11/98 (11%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWIC 95
            L D      + Q   + +      +VAHN+ F+   +   F              +   
Sbjct: 77  FLVDKPEYASIHQEFLDFI--KGAELVAHNASFDTGFMDYEFEKLDPTIGKTDDYCKVTD 134

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           TL +A+         L  + E   + +        L+ 
Sbjct: 135 TLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLD 172


>gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|118463087|ref|YP_879676.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
 gi|118164374|gb|ABK65271.1| DNA polymerase III subunit epsilon [Mycobacterium avium 104]
          Length = 329

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 25/146 (17%)

Query: 6   IDFETRS-------PIDLTKCGICK--YAEDVCVILFAFGFDDHPVELW--------DCV 48
           ID ET          I L   G+      E   V L   G D  P  +         D  
Sbjct: 20  IDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPGVDPGPTHVHGLTAAMLEDQP 79

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFER---TVLKACFNLDIPIHRWICTLVLARSNGL 105
               +   + E L     T+VAHN  F+            +++P+   +CT+ LAR   L
Sbjct: 80  QFADIAGDVVEVLR--GRTLVAHNVAFDYAFLAAEAELAGIELPVDTVMCTVELARRLDL 137

Query: 106 P---SALKAVGEALKLSSQKMEEGKE 128
                 L+ +     ++ Q+  +  +
Sbjct: 138 GIDNLRLETLAAYWGVTQQRPHDAFD 163


>gi|154249517|ref|YP_001410342.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153453|gb|ABS60685.1| DNA polymerase III, epsilon subunit [Fervidobacterium nodosum
           Rt17-B1]
          Length = 188

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 31/153 (20%)

Query: 3   TLFIDFETRSPID------------------LTKCGICKYAEDVCVILFAFGFDDHPVEL 44
              +D ET                       + K  I     +  V + A+      V  
Sbjct: 7   YCCVDIETTGIDPSMGDRIIEIAIIPIYKGKIVKEWIYTSLVNPKVNIQAYA---QSVHK 63

Query: 45  WDCVHDPVMPQ--VLKEALE--NTDVTIVAHNSYFERTVLKACFN----LDIPIHRWICT 96
                    P+   +   +   + D  +V HN+ F+ T L         L + ++ +I T
Sbjct: 64  ISNSDIENAPELDEIISVVRKYSKDTIMVFHNAKFDLTFLDYAAKEVGQLPLDVY-YIDT 122

Query: 97  LVLA-RSNGLPSALKAVGEALKLSSQKMEEGKE 128
           L ++    G    L+++ + +K+S +      +
Sbjct: 123 LDISKAVYGRRRKLESLAQEMKISHKVTHRAYD 155


>gi|332359305|gb|EGJ37126.1| DNA polymerase III PolC [Streptococcus sanguinis SK49]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|291238360|ref|XP_002739097.1| PREDICTED: beta-adrenergic receptor kinase 2-like, partial
           [Saccoglossus kowalevskii]
          Length = 600

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 61/260 (23%), Gaps = 13/260 (5%)

Query: 355 DPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYA 414
           D  + +    R      E       D   +  +                   D+      
Sbjct: 346 DVPERLGCRGRGASEVKEHPFFKGIDWQQVHLQKYPPPLIPPRGEVNAADAFDIGSFDEE 405

Query: 415 RSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEE 474
            +  +   +  ++           L      +          +N  T     K  S    
Sbjct: 406 DTKGIKLTEADQELYK-----NFPLVISERWQQEIAETVYEAINHATDTAEAKKKSKKNM 460

Query: 475 WEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIEN 534
             D   +   + ++   H       G      +K +        E   E  +    T+E 
Sbjct: 461 QPDEGEY--ALGKDCIMHGQMLKLGGPFLTAWQKRYFYLFPNRLEWQGEGEKGNILTMEQ 518

Query: 535 GKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYG 594
             ++     +    + +K       ++    R+    +       +     +  R    G
Sbjct: 519 VMSVDETTIKSFKCIQLKVKGGKQFVL----RTESDPEFVQWFKEIKEAFLEAQRMLRRG 574

Query: 595 GKLTENIVQAVSRDILAEGM 614
            K+     Q  S DI+   M
Sbjct: 575 PKMLAT--QGSSSDIMKNSM 592


>gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 876

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 62/185 (33%), Gaps = 14/185 (7%)

Query: 50  DPVMPQVLKEALE-NTDVTIVAHNSYFERTVL-----KACFNLDIPIHRWICTLVLARSN 103
                +VLKE +E + D  IV HN  ++  +L     +           +  TL + R  
Sbjct: 573 GEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLG-KPKFKTFYDTLDIYRRF 631

Query: 104 GLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
                   L+ + +      +   +  + I    +      + ++  P   E   L  ++
Sbjct: 632 YPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGE-LLVRAINEKIIPTSMERMALMSKH 690

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
            K    +++++ +  +   ++ +  + L   +   G+ +    A   N+        L  
Sbjct: 691 LKAFTAISKKLNELFK--IAESKRPYELVACV-MNGFNIKSMYAGDENKEKLNRLRDLYA 747

Query: 221 ELESL 225
               L
Sbjct: 748 LFRDL 752


>gi|319775991|ref|YP_004138479.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3047]
 gi|329123857|ref|ZP_08252414.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|317450582|emb|CBY86799.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3047]
 gi|327468820|gb|EGF14294.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 256

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L       +  E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMSQLGAHYEGHRIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALENTDVTI-VA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +      VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFHKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ + L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|294670031|ref|ZP_06734988.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308152|gb|EFE49395.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 244

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 48/185 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL------WDCVHDPVMPQ 55
             + +D ET         G+     D  ++ FA G +    +L           D  +P+
Sbjct: 5   RQIILDTETT--------GLYADRGD-RMLEFA-GIEMKKRQLTMNNLHLYIHPDRDIPE 54

Query: 56  VL-------KEALENTDVTI-----------------VAHNSYFERTVLK-ACFNLDIPI 90
                     E LE  +                    + HN+ F+   L      + +P 
Sbjct: 55  EAAAVHGITLEQLEERNAPKFEQVGRQIADFLRGAELIIHNARFDVGFLNMEFARMGLPS 114

Query: 91  HR-----WICTLVLARSNGLP--SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLY 143
                     TL +AR       ++L A+   L +   K      LI      E +  + 
Sbjct: 115 IEELDCEITDTLAMAREKFPGQKASLDALCSRLDVDRSKRVLHGALIDCELLAEVYLAMT 174

Query: 144 DRNKP 148
                
Sbjct: 175 REQFD 179


>gi|237730199|ref|ZP_04560680.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
 gi|226905738|gb|EEH91656.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
          Length = 245

 Score = 39.3 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 42/169 (24%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVVNRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTV-------LKACF 84
                  + D  +    K    +             +V HN+ F+          LK   
Sbjct: 64  EAFGVHGIADEFLLD--KPTFADVADEFLDYIRGAELVIHNASFDIGFMDYEFAKLKRDI 121

Query: 85  NLDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  +   +L LAR        +L A+    ++ + K      L+ 
Sbjct: 122 PKTNEFCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
 gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
          Length = 1462

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|255319740|ref|ZP_05360947.1| putative exodeoxyribonuclease X [Acinetobacter radioresistens SK82]
 gi|262379533|ref|ZP_06072689.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303194|gb|EET82404.1| putative exodeoxyribonuclease X [Acinetobacter radioresistens SK82]
 gi|262298990|gb|EEY86903.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 230

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 25/121 (20%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVILFA----------FGFDDHPVELW----- 45
           M  + +D ET +   L         +     L +          +   +  +        
Sbjct: 1   MQAIILDTETHTLNGLPIEIAYAPVQIAQGRL-SLDKSQLFDQLYSIGEQSISYAAMAVH 59

Query: 46  -----DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
                D    P        A     V I+ HN  ++   ++ C  +D    + ICTL LA
Sbjct: 60  HILEADIAGQPHYKDFSLPA---ETVYIIGHNINYDIRTIEKC-GIDTSNIKAICTLALA 115

Query: 101 R 101
           R
Sbjct: 116 R 116


>gi|238893208|ref|YP_002917942.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545524|dbj|BAH61875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 246

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 42/167 (25%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQ-----VLKEALEN--TDVTIVAHNSYFERTV-------LKACFNL 86
                  + D  +        + +   +      +V HN+ F+          L      
Sbjct: 64  EAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNASFDIGFMDYEFSKLNRGIGK 123

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                +   +L LAR        +L A+    ++ + K      L+ 
Sbjct: 124 TETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLD 170


>gi|317502960|ref|ZP_07961050.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315665926|gb|EFV05503.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 223

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 55/196 (28%), Gaps = 36/196 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L +D ETR    + + G     E   V L               ++D  +P  +   L
Sbjct: 46  DILGVDTETR---PMFRKG-----EQHKVALLQVA--SRDTCFLFRLNDIGIPPSVIRLL 95

Query: 62  ENTDVTIVA---HNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E+  V  +    H+   +   L     ++     ++              L+ + + + +
Sbjct: 96  EDCTVPKIGLSWHD---DLLSLHRR--VEFNPGYFVD-------------LQDIVKEIGI 137

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
               +++    I      +                      Y   D     ++++ ++  
Sbjct: 138 KDLSLQKLYANI----FHQKISKRQRLTNWEADVLSDKQKLYAATDAWACIKLYEEIK-W 192

Query: 179 SSKEQELWYLDQTIND 194
             K +E   +  +   
Sbjct: 193 LYKTKEYTLVVSSEPM 208


>gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 224-1]
 gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 224-1]
          Length = 1389

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 13/123 (10%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
             +  + +  K+   +    +  HN  F+   +        LD      + TL ++R   
Sbjct: 435 DDEKDVIKKFKDFYGD--RPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEVSRLLH 492

Query: 105 LP---SALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                  L ++ +     L              +   +  +    R    H        +
Sbjct: 493 PEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNAR---FHEADLGKMND 549

Query: 160 YCK 162
           Y K
Sbjct: 550 YAK 552


>gi|229590113|ref|YP_002872232.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens SBW25]
 gi|229361979|emb|CAY48879.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens SBW25]
          Length = 248

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 12/79 (15%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR--------WICTLVLARSN 103
            +     E + N    I+ HN+ F+   +   F L     R         + TL++AR  
Sbjct: 74  EVADEFFEFI-NGAQLII-HNAAFDVGFINNEFALMGQTDRADISKHCSILDTLMMARER 131

Query: 104 GLPS--ALKAVGEALKLSS 120
                 +L A+ +   + +
Sbjct: 132 HPGQRNSLDALCKRYGVDN 150


>gi|91070260|gb|ABE11179.1| putative DNA polymerase III, epsilon subunit [uncultured
           Prochlorococcus marinus clone HF10-11H7]
          Length = 259

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 17/112 (15%)

Query: 2   ATLFIDFETRSPIDLT----KCGICKYAEDVCVILFAFGF----DDHPVELWDCVHDP-- 51
             L +D ET    +      + G   +      +L    F    +++  E  + +     
Sbjct: 37  KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNNEAEYVNGISAEVT 96

Query: 52  VMPQVLKE------ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
            + Q  ++       L ++   IVAHN  F++          +   +WIC+L
Sbjct: 97  NISQPWEDGLHFFLKLVDSSDFIVAHNVEFDKKWFGKGRLPKLN-KKWICSL 147


>gi|325281116|ref|YP_004253658.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
 gi|324312925|gb|ADY33478.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
           splanchnicus DSM 20712]
          Length = 163

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 23/136 (16%)

Query: 5   FIDFETRSPIDLTKCGICK-YAEDVCVILFAFG-FDDHPVEL--W----------DCVHD 50
            IDFET +    + C I         ++   +      P     W          D    
Sbjct: 6   AIDFETANNERSSVCSIGIVIVRGEEIVDTFYSLIKPEPEYYNYWCSQVHGLCSNDTTDA 65

Query: 51  PVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL 105
           P+ P+V K+   L    + +VAHN  F+ + LK     + +D P + +  TL  +R    
Sbjct: 66  PIFPEVWKQIEPLI-KGLPLVAHNKPFDESCLKAVFRVYQMDYPDYEFYDTLCASRQAFP 124

Query: 106 ---PSALKAVGEALKL 118
                 L  V      
Sbjct: 125 ELENHQLHTVAATCGY 140


>gi|253572097|ref|ZP_04849501.1| DNA polymerase III alpha subunit [Bacteroides sp. 1_1_6]
 gi|251838277|gb|EES66364.1| DNA polymerase III alpha subunit [Bacteroides sp. 1_1_6]
          Length = 1267

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|229472345|gb|ACQ72687.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 38/143 (26%), Gaps = 12/143 (8%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R        +  V AD +G+E R L           A   G            + A A++
Sbjct: 13  RELFHPGANRSQVGADASGLELRRLGHYL-------ARFDGGKFAKEVVEGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R  GK +   L Y GG       A       +    + K            +    
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGDSKLGLTA-----GASKAQAVKKGKEIRSRIMADLDGFAA 120

Query: 485 MQENHPEHAIEDLFIGTACERVK 507
           +     E A   +  G     ++
Sbjct: 121 LNAAVQERAKSGVLKGLDGRPIR 143


>gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
 gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
          Length = 855

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 9/121 (7%)

Query: 48  VHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVLARS 102
                  +VLK+ LE   D  ++ HN  F+ T+L                +  TL +AR 
Sbjct: 556 EKGEDKERVLKDFLEFVKDTVVIGHNITFDITILNSELQRLGLEKANFKTYYDTLDIARR 615

Query: 103 NGLP---SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                    L+ + +     ++   +  + I    K      L ++ +P       ++G+
Sbjct: 616 FYPSLTNHKLETLSKLFNTETKSSHDAMDDI-LATKDVLMVMLKEKVEPTIINRMAVYGK 674

Query: 160 Y 160
           Y
Sbjct: 675 Y 675


>gi|171689072|ref|XP_001909476.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944498|emb|CAP70609.1| unnamed protein product [Podospora anserina S mat+]
          Length = 328

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 29/201 (14%)

Query: 4   LFIDFETR-----SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           +++D E         +DL    +     D  V +       +         D  +   LK
Sbjct: 34  IYVDLEGTNLGRGGTLDLITVLVPP---DRKVRIIDVKAMGNQAFTTPSKKDDNVT--LK 88

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA---------RSNGLPSAL 109
             LE+  +     +   +   LK+ +   + I   I   +L             GL    
Sbjct: 89  SILEDPSIRKYLWDVRNDADALKSLY--HVAISGVIDLQLLENLTRQGNSFYVTGLD--- 143

Query: 110 KAVGEALKLSSQKMEEGKELIARFCK-GETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           KAV   L+L  Q+  E K+      K   + +      +P           YC GDV   
Sbjct: 144 KAVENDLRLDQQEQIEWKKTKEDIRKRMASGDSGIFSTRPFT----TPVLRYCAGDVQFL 199

Query: 169 REIFKRLEPLSSKEQELWYLD 189
             + K  E   +   + W   
Sbjct: 200 PLLRKAYEARPAYTPKWWTHL 220


>gi|29347640|ref|NP_811143.1| DNA polymerase III subunit alpha [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339541|gb|AAO77337.1| DNA polymerase III alpha subunit [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 1267

 Score = 39.3 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|260939924|ref|XP_002614262.1| hypothetical protein CLUG_05748 [Clavispora lusitaniae ATCC 42720]
 gi|238852156|gb|EEQ41620.1| hypothetical protein CLUG_05748 [Clavispora lusitaniae ATCC 42720]
          Length = 930

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 5/144 (3%)

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNV 419
           I   ++S + A +G   V AD+   E   +A + G+        T          ++   
Sbjct: 365 IGSELKSLIEAPKGYVFVGADVDSEEL-WIASLIGDSMFKIHGGTALGWMTLEGDKNQKT 423

Query: 420 APA----QVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEW 475
                   +    R   KV      Y  G K   ++      NL+            E+ 
Sbjct: 424 DLHSKTADIMGISRNDAKVFNYGRIYGAGVKFATRLLKQCNANLSDAEAERLAKELYEKT 483

Query: 476 EDAENFCRWMQENHPEHAIEDLFI 499
           +   +  +  +        E +  
Sbjct: 484 KGLASHSKIFKRRVYHGGSESVMF 507


>gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
 gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
          Length = 1432

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 13/123 (10%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
             +  + +  K+   +    +  HN  F+   +        LD      + TL ++R   
Sbjct: 478 DDEKDVIKKFKDFYGD--RPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEVSRLLH 535

Query: 105 LP---SALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                  L ++ +     L              +   +  +    R    H        +
Sbjct: 536 PEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNAR---FHEADLGKMND 592

Query: 160 YCK 162
           Y K
Sbjct: 593 YAK 595


>gi|115463391|ref|NP_001055295.1| Os05g0357100 [Oryza sativa Japonica Group]
 gi|55168078|gb|AAV43946.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578846|dbj|BAF17209.1| Os05g0357100 [Oryza sativa Japonica Group]
 gi|215716995|dbj|BAG95358.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218196622|gb|EEC79049.1| hypothetical protein OsI_19612 [Oryza sativa Indica Group]
 gi|222631262|gb|EEE63394.1| hypothetical protein OsJ_18206 [Oryza sativa Japonica Group]
          Length = 580

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 55/189 (29%), Gaps = 38/189 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC----VHDPVMPQV- 56
             + +D E        K    K ++   V +      D    ++D       DP +    
Sbjct: 394 KIIGVDCE-------WKPNFEKGSKPNKVSIIQIA-SDKKAFIFDLIKLYEDDPKVLDSC 445

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  + ++++  + +N   +   L   +  ++   +       +               +
Sbjct: 446 FRRIMCSSNILKLGYNLQCDLHQLSQSYG-ELKCFQ-------SY-------------EM 484

Query: 117 KLSSQKMEEGKE-LIARFCKGETHEC--LYDRNKPNHREAW-RLFGEYCKGDVTVTREIF 172
            L  QK+ +G    ++   K           RN    +    +   EY   D  V   IF
Sbjct: 485 LLDIQKLFKGTTGGLSGLSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIF 544

Query: 173 KRLEPLSSK 181
             ++     
Sbjct: 545 HHVKGQPQF 553


>gi|330939732|gb|EGH43019.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 259

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 12/79 (15%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPIHRWICTLVLARSN 103
            +     E +      ++ HN+ F+   +   F L               + TL++AR  
Sbjct: 79  EVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSVLDTLMMARER 136

Query: 104 GLPS--ALKAVGEALKLSS 120
                 +L A+ +   + +
Sbjct: 137 HPGQRNSLDALCKRYGVDN 155


>gi|330903518|gb|EGH34090.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 147

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 12/79 (15%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPIHRWICTLVLARSN 103
            +     E +      ++ HN+ F+   +   F L               + TL++AR  
Sbjct: 43  EVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSVLDTLMMARER 100

Query: 104 GLPS--ALKAVGEALKLSS 120
                 +L A+ +   + +
Sbjct: 101 HPGQRNSLDALCKRYGVDN 119


>gi|330901691|gb|EGH33110.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 209

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 12/79 (15%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPIHRWICTLVLARSN 103
            +     E +      ++ HN+ F+   +   F L               + TL++AR  
Sbjct: 29  EVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSVLDTLMMARER 86

Query: 104 GLPS--ALKAVGEALKLSS 120
                 +L A+ +   + +
Sbjct: 87  HPGQRNSLDALCKRYGVDN 105


>gi|298383490|ref|ZP_06993051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 1_1_14]
 gi|298263094|gb|EFI05957.1| DNA polymerase III, alpha subunit [Bacteroides sp. 1_1_14]
          Length = 1267

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|225620435|ref|YP_002721692.1| exonuclease [Brachyspira hyodysenteriae WA1]
 gi|225215254|gb|ACN83988.1| exonuclease [Brachyspira hyodysenteriae WA1]
          Length = 287

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 52/191 (27%), Gaps = 29/191 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
            T+F+D ET         GI      V VI     +D   ++++    +        + +
Sbjct: 88  KTVFLDIETT--------GIKPSKAHVTVIG---CYDGKEMKVFVHGRNE---HEFLDYI 133

Query: 62  ENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
           +N  +  V  N   F+   L+  F   I   +            L   LK +G    L  
Sbjct: 134 KNYSII-VTFNGSCFDIPFLERYFATTIKCAQI----------DLRFVLKDLGYTGGLKK 182

Query: 121 QKMEEGKELIARFCKGETHECLYDRNK---PNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
            + + G            +  +   N         A      Y   D      +      
Sbjct: 183 IEQDVGISRGDDMEGVNGYTAVLLWNYYQDTKDETAIDSLIHYNLLDTINLEHLLCLAYN 242

Query: 178 LSSKEQELWYL 188
             ++      L
Sbjct: 243 KYAESYNCQLL 253


>gi|91205505|ref|YP_537860.1| ribonuclease D [Rickettsia bellii RML369-C]
 gi|157827220|ref|YP_001496284.1| ribonuclease D [Rickettsia bellii OSU 85-389]
 gi|91069049|gb|ABE04771.1| Ribonuclease D [Rickettsia bellii RML369-C]
 gi|157802524|gb|ABV79247.1| Ribonuclease D [Rickettsia bellii OSU 85-389]
          Length = 286

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/254 (10%), Positives = 63/254 (24%), Gaps = 39/254 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L ID E             +Y     + +     +   + +    +      V  + L
Sbjct: 21  KWLSIDTE----------FERRYTYYAKLSIIQVKAEGCSIIIDAINNLD--LNVFNKLL 68

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            + ++  + H    +  +    F             V A   G       +G  L     
Sbjct: 69  IDNNIIKIFHAPREDFEIFYNLF--KTLPSNIFDVQVAANVCG-------LGSQLSYDDI 119

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
             +  K  I    K         R              Y   DV    +I+   + L+  
Sbjct: 120 CYKLFKINID---KTHQKSNWLKRPIT------EDMLNYAFLDVEYLDKIY---KQLNKI 167

Query: 182 EQELWYLDQTINDRGYCVDVALAH------TLNQIVDVERTKLDQELESLTYGLVSSSRC 235
             +    +Q  +   +  ++                 ++    + +++ L       ++ 
Sbjct: 168 ILDNNLTNQYQSMLQFLFNIKNYEVKPEDAWKKVKFRIKIKDFNTKIQMLAAYREEKAQT 227

Query: 236 LEKLKTWLFLETGL 249
           +   +     +  L
Sbjct: 228 INIPRKHFISDEDL 241


>gi|171915182|ref|ZP_02930652.1| Distinct helicase family with a unique C-terminal domain including
           a metal-binding cysteine cluster [Verrucomicrobium
           spinosum DSM 4136]
          Length = 189

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 52/179 (29%), Gaps = 24/179 (13%)

Query: 2   ATLFIDFET-RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60
             ++ D ET R+  D+   G     +    I   +        ++         Q L   
Sbjct: 11  DIVYFDLETQRTANDV--GGWQNKHQMGMSIGCTYSSKTGQYHIY----TENTVQDLITQ 64

Query: 61  LENTDVTIVAHN-SYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS 119
           L   D  ++  N   F+  VL   +  D+                   +L  + +     
Sbjct: 65  LRRAD-LVIGFNHISFDYGVLMGYYAFDLKEEL--------------QSLDLMADIETKV 109

Query: 120 SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
             +++  + L +            +  +   +       EYC  DV VT+ I +     
Sbjct: 110 GHRLKL-ESLASATLGAGKTADGLEAIRWWQQGKLAEIAEYCCYDVKVTKCIHEYGAEH 167


>gi|89075025|ref|ZP_01161470.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
 gi|89049264|gb|EAR54828.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
          Length = 241

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/167 (10%), Positives = 38/167 (22%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMPQ 55
             +  D ET             + E   ++      +                 D  +  
Sbjct: 7   RIIVFDTETTGMNM-----TGPHYEGHRIVEIG-AVEIINRKLTGKTFHVYIKPDRPIDP 60

Query: 56  VLKEA--LENT--------------------DVTIVAHNSYFERTVLKA---CFNLDIP- 89
              +   + +                        +VAHN+ F+   +         D+  
Sbjct: 61  EAIDVHGITDEFLIGKPSYADIHQEFIDFIDGAELVAHNASFDIGFMDYEFQLMGSDLKK 120

Query: 90  ---IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              I +   TL +A+         L  +     + +        L+ 
Sbjct: 121 TEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLD 167


>gi|323258057|gb|EGA41735.1| ribonuclease D [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 125

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 34/110 (30%), Gaps = 24/110 (21%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L    FD   V L D          LK
Sbjct: 21  IALDTEFVRTRTYY---------------PQLGLIQL-FDGANVALID-PLGISDWSPLK 63

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSA 108
             L +T +T   H    +  V    F  ++P    I T +LA   G P +
Sbjct: 64  AVLRDTGITKFLHAGSEDLEVFLNAFG-ELP-EPLIDTQILAAFCGRPLS 111


>gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
 gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
          Length = 1462

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPQITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Peptostreptococcus stomatis DSM 17678]
          Length = 1202

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 2   ATLFIDFETR----SPIDLTKCGICKYAEDVCVI-LFAFGFDDH-----PVELW-----D 46
             +  D ET     +  ++T+ G     ED  +   F+   +        V+       D
Sbjct: 186 RFVVFDIETTGFSVTGDNITEIGA-VLLEDGQIKDRFSTFVNPKMDIPYEVQELTNITND 244

Query: 47  CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLAR 101
            V D    +       +   D  +VAHN+YF+   +        LD    +   TL+LAR
Sbjct: 245 MVEDAPGIEEALNKFMDFAKDSILVAHNAYFDTGFIAQKCSEVGLDYKHEKL-DTLLLAR 303

Query: 102 SNGLPS---ALKAVGEAL 116
                     L  + +AL
Sbjct: 304 VLMPHMKRFGLDRLTKAL 321


>gi|257439598|ref|ZP_05615353.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257197965|gb|EEU96249.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 1417

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 38/146 (26%), Gaps = 27/146 (18%)

Query: 6   IDFETRSPID----LTKCGICKYAEDVCVI-----------LFAFGFDDHPVE----LWD 46
            D ET         LT+ G      +  V+                  +        + D
Sbjct: 400 FDTETTGLDPGVEYLTEIGA-VIVRNGEVVEEFDTFVKPGKPITPKITELTGITNEMVAD 458

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNS-YFERTVLK---ACFNLDIPIHRWICTLVLARS 102
              +    +       +  +  VAHN+  F+   LK       +      +I TL +A++
Sbjct: 459 APGEKEALEAFLR-FADGRIL-VAHNAHAFDIRFLKAAAKRSGISFEPT-YIDTLTMAQA 515

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKE 128
                     G   K       E   
Sbjct: 516 MYPGLHNYKQGTINKHLELPSYEAHR 541


>gi|189218374|ref|YP_001939015.1| hypothetical protein Minf_0359 [Methylacidiphilum infernorum V4]
 gi|189185232|gb|ACD82417.1| Conserved hypothetical protein [Methylacidiphilum infernorum V4]
          Length = 184

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 48/182 (26%), Gaps = 31/182 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L++D ET+      + G     +   ++  +       +     +        L   L
Sbjct: 7   NILYLDIETQKSA--YEVGG---WQKKHLMGLSIAVIYSSLYNKYFIFSEKDVDQLLTML 61

Query: 62  ENTDVTIVAHNS-YFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120
              D   V  N   F+  VL++    ++   R +                     L +  
Sbjct: 62  READCI-VGFNILGFDIPVLESYSIFNLSELRCLD--------------------LLVDI 100

Query: 121 QKMEEGKELIARFCKGETHECLYDRNK----PNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           +K    +  + +  K                           EYC  DV +T+ I +   
Sbjct: 101 EKKISRRIKLEQIAKATLGIGKTAHGLQALQWWKEGKLLEIAEYCCYDVKITKLIHEYGV 160

Query: 177 PL 178
             
Sbjct: 161 KY 162


>gi|116074604|ref|ZP_01471865.1| Exonuclease [Synechococcus sp. RS9916]
 gi|116067826|gb|EAU73579.1| Exonuclease [Synechococcus sp. RS9916]
          Length = 317

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 19/111 (17%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGF-------DDHPVELWDCV---- 48
           L +D ET      T+  +   A    V    +L    F          P+          
Sbjct: 90  LILDTETTGLDPETEHCLEVGAILFDVPSRQVLAQQSFLLPVQANAAEPINRIPAAVTRL 149

Query: 49  --HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
                      +  L+  +V  VAHN+ F+R        L      W+C++
Sbjct: 150 AQPWEAALAYFQSLLDAAEVL-VAHNAAFDRQWFGRGC-LPSTAKPWLCSM 198


>gi|124267443|ref|YP_001021447.1| DNA polymerase III subunit epsilon [Methylibium petroleiphilum PM1]
 gi|124260218|gb|ABM95212.1| DNA polymerase III, epsilon subunit [Methylibium petroleiphilum
           PM1]
          Length = 234

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 10/87 (11%)

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVL------KACFNLDIPIHRWICTLVLARSNGLP 106
           +   L E L   ++ I  HN+ F+   L               +     +L +AR     
Sbjct: 74  VADELMEYLAGAEIII--HNAAFDVGFLDAELKRLQRPRFAEQVGAVTDSLTMAREMFPG 131

Query: 107 S--ALKAVGEALKLSSQKMEEGKELIA 131
              +L A+ + L++ +        L+ 
Sbjct: 132 KSNSLDALCKRLEVDNASRTLHGALLD 158


>gi|323492075|ref|ZP_08097237.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
 gi|323313636|gb|EGA66738.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
          Length = 210

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 51/159 (32%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELWDCVHD 50
            + +D ET S       L      K  ++         V L A    D   V++    H 
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHKIRHQ 89

Query: 51  PVMP-----QVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP----------- 89
            ++      Q L + LE   +  +V ++  +++ +L    +      +P           
Sbjct: 90  DLVDGIDEKQALIQLLEFIGNRPLVGYHIRYDKKILDLACQKQLGFPLPNPLIEVSQIYH 149

Query: 90  -------IHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
                   + +              +L A+   L L  Q
Sbjct: 150 DKLEKHLPNAYFD-----------LSLDAICRHLDLPMQ 177


>gi|294647200|ref|ZP_06724799.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CC
           2a]
 gi|294809189|ref|ZP_06767905.1| putative DNA polymerase III subunit alpha [Bacteroides
           xylanisolvens SD CC 1b]
 gi|292637487|gb|EFF55906.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CC
           2a]
 gi|294443583|gb|EFG12334.1| putative DNA polymerase III subunit alpha [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 1268

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 1448

 Score = 38.9 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 80/288 (27%), Gaps = 25/288 (8%)

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK----ACFNLDIPIHRWICTLVL 99
           D V      + + +  ++      I  HN  F+   +          +I     I TL L
Sbjct: 485 DMVQGSKSEEEVFKMFQDFCAGSIIAGHNVSFDMGFMNTGYQRHHLPEI-TQPVIDTLPL 543

Query: 100 ARSNGL---PSALKAVGE--------ALKLSSQKMEEGKEL-IARFCKGETHECLYDRNK 147
           AR          L  + +          + +      G  L I      + ++ +Y  + 
Sbjct: 544 ARFLYPDLRGYRLNTLSKKFKVSLEHHHRANYDAEATGHLLHIFLKDAEKRYQVVYVDDL 603

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTL 207
             H      +         VT  + K    L +  + +   +     R   +  ++    
Sbjct: 604 NKHMTDNGAYRH--ARPFHVTL-LAKNQAGLKNMYKLVSLANVKYFYRVPRIPRSVLERY 660

Query: 208 NQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNK 267
            + + +       E+   T  +       ++   +          +      Q+V+SS  
Sbjct: 661 REGLLIGSACSSGEVF--TAMMQKGYAEAKQKAAFYDYLEVQPKPNYAPLLEQKVISSEH 718

Query: 268 KLTPQAIQVFNNRMRASRSAVLKLNT-LVEAMNSDGRLRGTLQFLGAS 314
            L      +        ++ V   +   +   ++  R        GA+
Sbjct: 719 HLESIIKNMIKLGDELGKTVVATGDAHYLNPEDAIYRKILINSQGGAN 766


>gi|298483654|ref|ZP_07001829.1| DNA polymerase III, alpha subunit [Bacteroides sp. D22]
 gi|298270224|gb|EFI11810.1| DNA polymerase III, alpha subunit [Bacteroides sp. D22]
          Length = 1268

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|262212195|gb|ACY35714.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 192

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 362 DCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAP 421
              R   + S  + +V ADLAGIE RVL+          A                +   
Sbjct: 10  SRFRELSLPSPNQFMVGADLAGIELRVLSHF-------PARYDNGRYADILLNGDIHQVN 62

Query: 422 AQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENF 481
           A      R + K +  A  Y  G +           +        +   A  E  D  + 
Sbjct: 63  ADKIGISRELVKTVTYAFLYGAGDEKIGHSYDKLLPSKAAEKKGKEIRQAYIEAIDGRDK 122

Query: 482 CRWMQENHPEHAIEDLFIGTA 502
                +   E        G  
Sbjct: 123 LLEAIKKASERGFIKALDGRK 143


>gi|291456557|ref|ZP_06595947.1| ribonuclease D [Bifidobacterium breve DSM 20213]
 gi|291381834|gb|EFE89352.1| ribonuclease D [Bifidobacterium breve DSM 20213]
          Length = 433

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 34/116 (29%), Gaps = 22/116 (18%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           D T + H+S  +        +L +       T + AR  GL    L AV E         
Sbjct: 95  DATWILHDSLMDLPGFA---DLGLQPKALFDTEIAARLLGLHRFGLAAVTEHY------- 144

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLS 179
                L     K  +      R  P      R +  Y   DV V  E+   +    
Sbjct: 145 -----LGITLAKEHSAADWSYRPLP------RDWRNYAALDVEVLIELENLMRRDL 189


>gi|145641463|ref|ZP_01797041.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
 gi|145273754|gb|EDK13622.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21]
          Length = 205

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 30/160 (18%)

Query: 2   ATLFIDFETRSPIDL-TKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK-- 58
             + +D ET     L          E   V L    +  +   ++     PV P  +K  
Sbjct: 6   RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65

Query: 59  ----EALEN-TDVTIVA--------------HNSYFERTVLK---ACFNLDIPIHRW--- 93
               E L +  +   VA              HN+ F+   +       NL++        
Sbjct: 66  GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125

Query: 94  ICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             TL +AR         L A+ + L + + K      L+ 
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLD 165


>gi|145595801|ref|YP_001160098.1| hypothetical protein Strop_3286 [Salinispora tropica CNB-440]
 gi|145305138|gb|ABP55720.1| DNA polymerase III, epsilon subunit [Salinispora tropica CNB-440]
          Length = 607

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 47  CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA- 100
            +  P + +VL   LE    D  +VAHN+ ++   LK   A      P  R + T  LA 
Sbjct: 113 LLPAPPITEVLPSFLEFLPPDAVLVAHNAPYDVGFLKAACAAHGYRWPSPRVLDTAALAR 172

Query: 101 RSNG----LPSALKAVGEALK 117
           R           L  +    +
Sbjct: 173 RVLTRDEVPNRRLGTLAAYFR 193


>gi|34498206|ref|NP_902421.1| exonuclease [Chromobacterium violaceum ATCC 12472]
 gi|34104060|gb|AAQ60420.1| probable exonuclease [Chromobacterium violaceum ATCC 12472]
          Length = 207

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 70  AHNSYFERTVLKACFN-LDI-PIHRWICTLVLARSN---GLPSALKAVGEALKLSS 120
           AHN+ F+R         L +     + CTL+L+R          L  +     L  
Sbjct: 89  AHNAGFDRKFWDYELGLLGLSRRQDFACTLLLSRRLLPQAPDHKLGTLARWAGLPD 144


>gi|327282457|ref|XP_003225959.1| PREDICTED: protein KIAA1199-like [Anolis carolinensis]
          Length = 1431

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 47/171 (27%), Gaps = 8/171 (4%)

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
           ++     G   +     +    +         + +++     LS  +   P+      + 
Sbjct: 368 KVFQAENGEHFNVSSTSEWVQDVAWTEWFEKPEKSKSKDGEKLSDFRAAHPEVCDHPLDI 427

Query: 281 MRASRSAVLKLNTLVEAMNSDGR-LRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
              +         +VE +  +GR  R   +  G +  G     V      P   +    +
Sbjct: 428 QALTL---DGAPLIVEVIYKNGRNYRFFCRGAGQTSGGCHKYRVRFLCGKPVRPKLTVTV 484

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLA 390
           D  +      +  +    ++    V    +AS    +  A+   I      
Sbjct: 485 DTNVNSTILRLADNVQSWKVGDRIV----VASTDYSMHQAEEFQILPCRAC 531


>gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
 gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
          Length = 465

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 56  VLKEALENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNG-----LPS 107
              + L + DV +VAHN+ F+   L    A   L+ P  R + TL LAR           
Sbjct: 96  DWADLLAD-DVILVAHNARFDVGHLRGAAAAVGLEWPEPRVLDTLALARRAWTRSEVPNH 154

Query: 108 ALKAVGEALK 117
            L  +   + 
Sbjct: 155 KLGTLAAFVG 164


>gi|229472581|gb|ACQ72805.1| DNA polymerase [Uncultured T7-like podovirus]
          Length = 191

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 38/143 (26%), Gaps = 12/143 (8%)

Query: 365 RSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQV 424
           R        +  V AD +G+E R L           A   G            + A A++
Sbjct: 13  RELFHPGANRPQVGADASGLELRCLGHYL-------ARFDGGKFAKEVVEGDIHTALAEI 65

Query: 425 TKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRW 484
               R  GK +   L Y GG       A       +    + K            +    
Sbjct: 66  YGTDRKSGKGVTYCLIYGGGDSKLGLTA-----GASKAQAVKKGKEIRSRIMANLDGFAA 120

Query: 485 MQENHPEHAIEDLFIGTACERVK 507
           +     E A   +  G     ++
Sbjct: 121 LNAAVQERAKSGVLKGLDGRPIR 143


>gi|68536154|ref|YP_250859.1| hypothetical protein jk1077 [Corynebacterium jeikeium K411]
 gi|260578851|ref|ZP_05846757.1| ribonuclease D (RNase D) [Corynebacterium jeikeium ATCC 43734]
 gi|68263753|emb|CAI37241.1| rnd [Corynebacterium jeikeium K411]
 gi|258602998|gb|EEW16269.1| ribonuclease D (RNase D) [Corynebacterium jeikeium ATCC 43734]
          Length = 423

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 40/164 (24%), Gaps = 34/164 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           + ID E              Y  D    L           L D   +P   + + E +  
Sbjct: 35  IAIDTE----------RASAYRYDDRAFLIQLRRHGSGTFLIDPEAEPQATRRMAEVVNE 84

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
            +   V H ++ +   L     L         T +  +  G         E + LS    
Sbjct: 85  AE--WVLHAAHTDLPCL---MALGWRPQVLHDTQIAGQLLG--------AERIGLSGM-- 129

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVT 166
                L A F            N    R    +    Y   DV 
Sbjct: 130 -----LDAYFDI---QVPKDKGNADWSRRPLTQAMLNYAALDVE 165


>gi|330959421|gb|EGH59681.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 259

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 12/79 (15%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD--------IPIHRWICTLVLARSN 103
            +     E +      ++ HN+ F+   +   F L               + TL++AR  
Sbjct: 79  EVADEFFEFI--KGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCSILDTLMMARER 136

Query: 104 GLPS--ALKAVGEALKLSS 120
                 +L A+ +   + +
Sbjct: 137 HPGQRNSLDALCKRYGVDN 155


>gi|311740580|ref|ZP_07714407.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304100|gb|EFQ80176.1| DNA polymerase III subunit epsilon [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 223

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 43/148 (29%), Gaps = 35/148 (23%)

Query: 2   ATLFIDFETRSPID-----------------------LTKCGICKYAEDVCVILFAFGFD 38
             L  D ET S                          L   GI    E   V        
Sbjct: 7   RMLAFDLETTSANPKEARIVTSALVRIDGRDVQKVEHLADPGIEIPQEATNVHGIT---- 62

Query: 39  DHPVELWDCVHDPVM---PQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWIC 95
                     H+ V+    + +K A E+  +T++ +N+ F+ TVL++             
Sbjct: 63  TEKARAEGRPHEEVLKDTIEAIKAAWED-GLTLIVYNAAFDLTVLRSLTGDFTVTGPVYD 121

Query: 96  TLVLARSNGL----PSALKAVGEALKLS 119
             V+ R +         L AV E   + 
Sbjct: 122 PYVIDRVSDKWRKGKRTLGAVCEHYGVE 149


>gi|304406903|ref|ZP_07388557.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           curdlanolyticus YK9]
 gi|304343890|gb|EFM09730.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
           curdlanolyticus YK9]
          Length = 957

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           D      +   + + L +    +VAHN  F+   +              R + T+ L R 
Sbjct: 64  DAPSVEDVLTDVVKLLGDA--VLVAHNVGFDAHFMNRALDRCGYSPFTGRRLDTIDLLRM 121

Query: 103 NG---LPSALKAVGEALKLSSQ 121
                    L AV EA  ++ +
Sbjct: 122 LYPTLPSYQLGAVSEAFGITHE 143


>gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 202-4]
 gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus gasseri 202-4]
          Length = 1432

 Score = 38.9 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 13/123 (10%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
             +  + +  K+   +    +  HN  F+   +        LD      + TL ++R   
Sbjct: 478 DDEKDVIKKFKDFYGD--RPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEVSRLLH 535

Query: 105 LP---SALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                  L ++ +     L              +   +  +    R    H        +
Sbjct: 536 PEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNAR---FHEADLGKMND 592

Query: 160 YCK 162
           Y K
Sbjct: 593 YAK 595


>gi|315446380|ref|YP_004079259.1| DNA polymerase III subunit epsilon [Mycobacterium sp. Spyr1]
 gi|315264683|gb|ADU01425.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. Spyr1]
          Length = 333

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 20/139 (14%)

Query: 37  FDDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFN 85
            D  P  +     +          +   L E L     T+VAHN  F+ + L        
Sbjct: 63  VDPGPTHVHGLTAEMLEGQPTFGDVVGDLCEVLR--GRTLVAHNVGFDYSFLSAEAELVG 120

Query: 86  LDIPIHRWICTLVLARSNGLP---SALKAVGEALKL----SSQKMEEGKELIARFCKGET 138
            ++PI   +CT+ LAR   L      L+ +     +        +++   L         
Sbjct: 121 AELPIDTVMCTVELARRLDLGLENLRLETLAAHWGVTQMRPHDALDDAMVLAQILKPVLV 180

Query: 139 HECLYDRNKPNHREAWRLF 157
                 +  P H    R +
Sbjct: 181 RAQERRKWLPVHPVGRRTW 199


>gi|308495870|ref|XP_003110123.1| hypothetical protein CRE_06485 [Caenorhabditis remanei]
 gi|308244960|gb|EFO88912.1| hypothetical protein CRE_06485 [Caenorhabditis remanei]
          Length = 1337

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 68/256 (26%), Gaps = 38/256 (14%)

Query: 426  KDQRAIGKVMELALGYQGGA----KAFQKMASTTGLNLNTFAHLVKT------NSAPEEW 475
            K  R   KV+  A  Y  G     K   ++     ++    A  +            +  
Sbjct: 1011 KISRNHAKVLNYARLYGSGETHAGKHLMRIGGMKQIDAEATAAQLFKLTKGETAKYMKVD 1070

Query: 476  EDAENFCRWMQENHPEHAIEDLF---------------IGTACERVKKAWRQKHSRVSEL 520
                 F     E   +                        +     +  +  K+S +  L
Sbjct: 1071 LKMNCFVDKYIEETAKDPDSSKILTIDGVYYMPSYSSQFSSETVEFENWFLSKYSSLFNL 1130

Query: 521  ----WNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNN 576
                 + L  +  +  E+ + +           +++       L  P        D    
Sbjct: 1131 NESHQDNLIYSIYENAEDQRKLFVGGYESSTFNFLETSAAAHDLRTPI-LGCQIADSLGK 1189

Query: 577  RSYLNTTTRQLTREYTYGGKLTENIVQAVSRD------ILAEGMMNATKAGYDIVLTVHD 630
                   +    R   Y   +   IVQ+ + D      I  + + +  K     V+++HD
Sbjct: 1190 LPEGTPDSAYFDRR--YKRSVMNWIVQSSAVDFLHLLLISMQWLCDIYKIDARFVISIHD 1247

Query: 631  EIVCETPDTDEFNASM 646
            E+     + D    ++
Sbjct: 1248 EVRYMCKEKDAPRLAL 1263


>gi|28899651|ref|NP_799256.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260361502|ref|ZP_05774549.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260879140|ref|ZP_05891495.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260895473|ref|ZP_05903969.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260903319|ref|ZP_05911714.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|28807903|dbj|BAC61140.1| putative DNA polymerase III, epsilon subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088058|gb|EFO37753.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091615|gb|EFO41310.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308109530|gb|EFO47070.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308112864|gb|EFO50404.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|328472225|gb|EGF43095.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
          Length = 209

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 52/186 (27%), Gaps = 52/186 (27%)

Query: 4   LFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELW-----D 46
           + +D ET S       L      K  ++         V L A    D   V++      D
Sbjct: 31  VSLDCETTSLDPNRAELVTIAATKIIDNRILTSQPFEVRLRAPQSLDSGSVKIHKIRHQD 90

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP------------ 89
                   + L + L    +  +V ++  +++ +L    +      +P            
Sbjct: 91  LADGISEKEALLKLLAFIGNRPLVGYHIRYDKKILDLACQRQLGFPLPNPLIEVSQIYHD 150

Query: 90  ------IHRWICTLVLARSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCKGETHECL 142
                  + +              +L A+ + L+L    K +  ++ I+           
Sbjct: 151 KLERHLPNAYFD-----------LSLDAICKHLELPIQDKHDALQDAISAALVFVRLTKG 199

Query: 143 YDRNKP 148
              N  
Sbjct: 200 DLPNLT 205


>gi|145221884|ref|YP_001132562.1| DNA polymerase III subunit epsilon [Mycobacterium gilvum PYR-GCK]
 gi|145214370|gb|ABP43774.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
          Length = 345

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 20/139 (14%)

Query: 37  FDDHPVELWDCVHD--------PVMPQVLKEALENTDVTIVAHNSYFERTVL---KACFN 85
            D  P  +     +          +   L E L     T+VAHN  F+ + L        
Sbjct: 75  VDPGPTHVHGLTAEMLEGQPTFGDVVGDLCEVLR--GRTLVAHNVGFDYSFLSAEAELVG 132

Query: 86  LDIPIHRWICTLVLARSNGLP---SALKAVGEALKL----SSQKMEEGKELIARFCKGET 138
            ++PI   +CT+ LAR   L      L+ +     +        +++   L         
Sbjct: 133 AELPIDTVMCTVELARRLDLGLENLRLETLAAHWGVTQMRPHDALDDAMVLAQILKPVLV 192

Query: 139 HECLYDRNKPNHREAWRLF 157
                 +  P H    R +
Sbjct: 193 RAQERRKWLPVHPVGRRTW 211


>gi|237714902|ref|ZP_04545383.1| DNA polymerase III alpha subunit [Bacteroides sp. D1]
 gi|262406830|ref|ZP_06083379.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229445227|gb|EEO51018.1| DNA polymerase III alpha subunit [Bacteroides sp. D1]
 gi|262355533|gb|EEZ04624.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|295084710|emb|CBK66233.1| DNA polymerase III, alpha subunit [Bacteroides xylanisolvens XB1A]
          Length = 1268

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|188534758|ref|YP_001908555.1| DNA polymerase III subunit epsilon [Erwinia tasmaniensis Et1/99]
 gi|188029800|emb|CAO97680.1| DNA polymerase III epsilon subunit [Erwinia tasmaniensis Et1/99]
          Length = 249

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 44/168 (26%), Gaps = 45/168 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 8   RQIVLDTETTGMNMI-----GVHYEGHRIIEIG-AVEVINRRLTGNNFHVYLKPDRLVDP 61

Query: 41  PVELWDCVHDPVMPQV--LKEALEN-----TDVTIVAHNSYFERTVLKACFNLDIPIH-- 91
                  + D  +       +  ++         +V HN+ F+   +   F   +     
Sbjct: 62  EAFGVHGIADEFLLDKPTFAQIADDFLAYINGAELVIHNASFDIGFMDYEFA-KLQRGIA 120

Query: 92  ------RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                 +   +L +AR        +L A+    ++ + K      L+ 
Sbjct: 121 KTDTFCKITDSLAMARRLFPGKRNSLDALCSRYEIDNSKRTLHGALLD 168


>gi|126175491|ref|YP_001051640.1| 3'-5' exonuclease [Shewanella baltica OS155]
 gi|125998696|gb|ABN62771.1| 3'-5' exonuclease [Shewanella baltica OS155]
          Length = 315

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 15/89 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH---DPVMPQVLKE 59
            L  D ETR           +  +   + L      D         H        Q LK 
Sbjct: 132 VLGFDTETR-------ASFERGVQHP-LSLIQIATAD--ACYL-FQHAILGEQFTQ-LKT 179

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDI 88
            LE+ ++  V      +   LK  + +++
Sbjct: 180 VLEDENILKVGVGLRSDAQALKRQWGINV 208


>gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
           ATCC 33323]
 gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
           gasseri ATCC 33323]
          Length = 1432

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 13/123 (10%)

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
             +  + +  K+   +    +  HN  F+   +        LD      + TL ++R   
Sbjct: 478 DDEKDVIKKFKDFYGD--RPLCGHNVQFDVGFVNAALRRAGLDEISQPVVDTLEVSRLLH 535

Query: 105 LP---SALKAVGEALK--LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
                  L ++ +     L              +   +  +    R    H        +
Sbjct: 536 PEQTRHTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNAR---FHEADLGKMND 592

Query: 160 YCK 162
           Y K
Sbjct: 593 YAK 595


>gi|268590571|ref|ZP_06124792.1| DNA polymerase II [Providencia rettgeri DSM 1131]
 gi|291313959|gb|EFE54412.1| DNA polymerase II [Providencia rettgeri DSM 1131]
          Length = 783

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 15/98 (15%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-----ELWDCVHDPVMPQV 56
             + +D ET    +L   G+    ++   ++F  G +  P       L      P +   
Sbjct: 153 KAVSLDIETSQHGELYSIGLSGCGDN---VVFMLGPEQGPALSSEHRLIYVNSRPQLLHK 209

Query: 57  LKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDI 88
           L E L   + D   +  N   F+  VL+     + + +
Sbjct: 210 LNEWLHQYDPDAI-IGWNLIQFDLQVLQKHAERYGIPL 246


>gi|148703462|gb|EDL35409.1| Werner syndrome homolog (human) [Mus musculus]
          Length = 1385

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 27/166 (16%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      ++   L+      V PQ LK  LEN  +        
Sbjct: 76  DMEWPPIYKPGKRSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK------ 129

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 130 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANE-KLKCAETWSLNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
           +      +  +    R               Y   D      I+++
Sbjct: 175 VKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQK 220


>gi|7595900|gb|AAF64490.1|AF241636_1 WRN protein [Mus musculus]
          Length = 1401

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 27/166 (16%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      ++   L+      V PQ LK  LEN  +        
Sbjct: 76  DMEWPPIYKPGKRSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK------ 129

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 130 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANE-KLKCAETWSLNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
           +      +  +    R               Y   D      I+++
Sbjct: 175 VKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQK 220


>gi|3851581|gb|AAC72359.1| Wrn protein [Mus musculus]
          Length = 988

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 27/166 (16%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      ++   L+      V PQ LK  LEN  +        
Sbjct: 76  DMEWPPIYKPGKRSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK------ 129

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 130 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANE-KLKCAETWSLNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
           +      +  +    R               Y   D      I+++
Sbjct: 175 VKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQK 220


>gi|74227079|dbj|BAE38334.1| unnamed protein product [Mus musculus]
          Length = 789

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 27/166 (16%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      ++   L+      V PQ LK  LEN  +        
Sbjct: 76  DMEWPPIYKPGKRSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK------ 129

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 130 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANE-KLKCAETWSLNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
           +      +  +    R               Y   D      I+++
Sbjct: 175 VKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQK 220


>gi|29429137|sp|O09053|WRN_MOUSE RecName: Full=Werner syndrome ATP-dependent helicase homolog;
           AltName: Full=Exonuclease WRN
          Length = 1401

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 27/166 (16%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      ++   L+      V PQ LK  LEN  +        
Sbjct: 76  DMEWPPIYKPGKRSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK------ 129

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 130 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANE-KLKCAETWSLNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
           +      +  +    R               Y   D      I+++
Sbjct: 175 VKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQK 220


>gi|2130973|dbj|BAA20269.1| WRN typeI [Mus musculus]
 gi|2130975|dbj|BAA20270.1| WRN typeII [Mus musculus]
          Length = 1401

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 27/166 (16%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      ++   L+      V PQ LK  LEN  +        
Sbjct: 76  DMEWPPIYKPGKRSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK------ 129

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 130 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANE-KLKCAETWSLNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
           +      +  +    R               Y   D      I+++
Sbjct: 175 VKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQK 220


>gi|319946618|ref|ZP_08020852.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC
           700641]
 gi|319746666|gb|EFV98925.1| DNA polymerase III, epsilon subunit [Streptococcus australis ATCC
           700641]
          Length = 819

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNGLP-- 106
            + + + E +E+     VAHN  F+  +L         ++   R   T+ LA+       
Sbjct: 75  QVARQVYELIEDA--VFVAHNVKFDANLLAESLFWEGFELITPRI-DTVELAQVFFPTLE 131

Query: 107 -SALKAVGEALKLSSQ 121
              L ++ E L +   
Sbjct: 132 RYNLSSLCEELAIPLD 147


>gi|302879448|ref|YP_003848012.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
 gi|302582237|gb|ADL56248.1| Exonuclease RNase T and DNA polymerase III [Gallionella
           capsiferriformans ES-2]
          Length = 303

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 22/115 (19%)

Query: 4   LFIDFETRSPID----LTKCGICKYAEDVCV-----ILFAF--------GFDDHPVELWD 46
           + +D ET         + + G+  +  D        +L +F               E+  
Sbjct: 43  VVVDTETTGINSAQDAIIELGMVLFEYDPDTGEAGRVLGSFDQLEDPGMAIPPESTEVHG 102

Query: 47  CV----HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
                     +      A  +    ++AHNS F+R  L+   ++      W C+L
Sbjct: 103 ITDEMVQGKRIDDAAVAAFLDGVSVVIAHNSKFDRVFLEKRLSV-FETLPWGCSL 156


>gi|239636871|ref|ZP_04677870.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           warneri L37603]
 gi|239597545|gb|EEQ80043.1| DnaQ family exonuclease/DinG family helicase [Staphylococcus
           warneri L37603]
          Length = 902

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 14/102 (13%)

Query: 68  IVAHNSYFERTVLKACF---NLDIPIHRWICTLVL---ARSNGLPSALKAVGEALKL--- 118
            VAHN  F+   +K  F   N+     R + TL L   A        L  + EA  +   
Sbjct: 87  FVAHNVAFDLNFIKKAFKNCNIKYRPKRVLDTLELFKIAFPTDKSYQLSELAEAHDIPLN 146

Query: 119 -----SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWR 155
                        + +I  F K E       +      +  +
Sbjct: 147 NAHRADEDATTTAQLMIKAFEKFEQLPLDTLKQLYYLSKDLK 188


>gi|228938753|ref|ZP_04101356.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228971635|ref|ZP_04132257.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978244|ref|ZP_04138621.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis Bt407]
 gi|228781261|gb|EEM29462.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis Bt407]
 gi|228788048|gb|EEM36005.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228820928|gb|EEM66950.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326939259|gb|AEA15155.1| ATP-dependent helicase DinG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 934

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|46122277|ref|XP_385692.1| hypothetical protein FG05516.1 [Gibberella zeae PH-1]
          Length = 1124

 Score = 38.9 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 54/194 (27%), Gaps = 11/194 (5%)

Query: 326 PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIE 385
           PQ +P  + +   ++        +  +       +   +++ V A  G   V AD+   E
Sbjct: 651 PQIIPMGTITRRAVENTWLTASNAKKN------RVGSELKAMVKAPRGYCFVGADVDSEE 704

Query: 386 ARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGY 441
              +A + G+                   +S        T       R   K+      Y
Sbjct: 705 L-WIASLVGDATFKLHGGNAVGFMTLEGTKSAGTDLHSRTASILGITRNNAKIFNYGRIY 763

Query: 442 QGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
             G K    +      NL+    +   +      +  +   + + +        + F+  
Sbjct: 764 GAGLKFAATLLRQFNPNLSEKQTMETASRLYANTKGTKTNRKLLYKRPFWRGGTESFVFN 823

Query: 502 ACERVKKAWRQKHS 515
             E   +  + +  
Sbjct: 824 KLEEFAEQDKARTP 837


>gi|293368783|ref|ZP_06615387.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD
           CMC 3f]
 gi|292636088|gb|EFF54576.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD
           CMC 3f]
          Length = 1268

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
 gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
          Length = 1437

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 39/139 (28%), Gaps = 24/139 (17%)

Query: 3   TLFIDFETR------------SPIDLTKCGICKYAEDVCVILFAFG--FDDHPVELWDCV 48
            +  D ET             S + + K  +     +     F+      D      D V
Sbjct: 421 YVVFDVETTGLSAAYDKVIELSAVKMVKGNVIAEFSEFIDPGFSLSQTTVDLTSITDDMV 480

Query: 49  HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARS 102
                 + +  A      D  +V HN  F+   +    +    +    +  I TL LAR 
Sbjct: 481 RGSKSEKEVFTAFREFYGDAILVGHNVTFDMGFMNEGYERH-GMGSITNPVIDTLTLARF 539

Query: 103 NGL---PSALKAVGEALKL 118
                    L  + +   +
Sbjct: 540 LYPNMRSYRLNTLAKHFGV 558


>gi|237718270|ref|ZP_04548751.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_2_4]
 gi|299147818|ref|ZP_07040881.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
 gi|229452454|gb|EEO58245.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_2_4]
 gi|298514001|gb|EFI37887.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
          Length = 1268

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|89889889|ref|ZP_01201400.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
 gi|89518162|gb|EAS20818.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
          Length = 236

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 48/188 (25%), Gaps = 52/188 (27%)

Query: 21  ICKYAEDVCVILFAFGFDDHPVELWDCVHDP-----------VMPQVLKEALEN----TD 65
              +AE   ++  +           D  +              + +     +++      
Sbjct: 56  AGIWAEFGKIVCISV------GYFVDRTYRQFRVRSFTGTEIELLEEFSTLIKDHFSGRH 109

Query: 66  VTIVAHNSY-FERTVLKACF---NLDIP-------IHRWI----CTLVLARSNGLPS--A 108
             + AHN   F+   +        + +P          W      T+ L +        +
Sbjct: 110 HLLCAHNGKEFDFPYIARRMIINGIALPAKLNLFGKKPWEVPHLDTMELWKFGDYKHFTS 169

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT 168
           LK +   L + S K                 +    RN             YC+ DV   
Sbjct: 170 LKLMTRVLGIPSPKD--------------DIDGSQVRNVYYEENDVNRIARYCEKDVIAV 215

Query: 169 REIFKRLE 176
            +I  +L 
Sbjct: 216 AQILLKLR 223


>gi|295398912|ref|ZP_06808894.1| DnaQ family exonuclease/DinG family helicase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978378|gb|EFG53974.1| DnaQ family exonuclease/DinG family helicase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 921

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 54/197 (27%), Gaps = 30/197 (15%)

Query: 1   MA--TLFIDFETRSPID-----LTKCGICKYAEDVCVI-LFAFGFDDH---PVELWDCVH 49
           M    + +D ET   +      + + G+    E+  +I  F+  F+     P  +    +
Sbjct: 1   MKDRFVIMDLETTGNVPKKGDRIIQLGM-VVVENGQIIERFSSFFNPERDIPPFVQQLTN 59

Query: 50  -DPVMPQVLKEALENTDVT---------IVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
            +  M                        VAHN  F+   L+               I T
Sbjct: 60  INEQMVAD-APVFAEEAAKVVDMLQQSYFVAHNVSFDLQFLQEELHMAGFPPFSGPTIDT 118

Query: 97  LVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN-HRE 152
           + LAR          L  + + L ++  +            K         R  P    +
Sbjct: 119 VELARIVFPDAESYKLADLAKLLCIAHDQPHHADSDAEVTAKLFIALLDRLRQLPLVTLQ 178

Query: 153 AWRLFGEYCKGDVTVTR 169
             +    Y K D+    
Sbjct: 179 HLKRLSAYLKSDLYSLL 195


>gi|228920352|ref|ZP_04083698.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228839274|gb|EEM84569.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 934

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|297561085|ref|YP_003680059.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296845533|gb|ADH67553.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 335

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 42  VELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLV 98
            ++ D          + E   +    +VAHN+ F+  VL+       L  P   + CTL 
Sbjct: 63  ADVADAPSWEQAHARIVE-FADGG-PLVAHNAAFDMGVLRQACGHTGLSHPAWEYACTLA 120

Query: 99  LAR 101
           L+R
Sbjct: 121 LSR 123


>gi|222151870|ref|YP_002561030.1| hypothetical protein MCCL_1627 [Macrococcus caseolyticus JCSC5402]
 gi|222120999|dbj|BAH18334.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 297

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR--SNGLPSALKAVGEALKLS 119
           D+ +V H + F+  VL      ++ ++P   + C+ ++AR        +LK +     L 
Sbjct: 80  DLPVVCHFAQFDMKVLHASIKRYHFEMPTLPYFCSCIMARDTVTNHSYSLKNMMTYYNLE 139


>gi|229160592|ref|ZP_04288587.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           R309803]
 gi|228623002|gb|EEK79833.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           R309803]
          Length = 933

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|170763502|ref|NP_035851.3| Werner syndrome ATP-dependent helicase homolog [Mus musculus]
 gi|170763504|ref|NP_001116294.1| Werner syndrome ATP-dependent helicase homolog [Mus musculus]
 gi|3885838|gb|AAC78077.1| Wrn protein [Mus musculus]
 gi|29748014|gb|AAH50921.1| Wrn protein [Mus musculus]
 gi|38173728|gb|AAH60700.1| Wrn protein [Mus musculus]
          Length = 1401

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 51/203 (25%), Gaps = 29/203 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      +    L+      V PQ LK  LEN  +        
Sbjct: 76  DMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKK------ 129

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 130 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANE-KLKCAETWSLNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           +      +  +    R               Y   D      I+++L  L    Q     
Sbjct: 175 VKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTAQVFALN 234

Query: 189 DQTINDRGYCVDVALAHTLNQIV 211
               N           +++++ +
Sbjct: 235 KAEENLPLEM--KKQLNSISEEM 255


>gi|74196546|dbj|BAE34397.1| unnamed protein product [Mus musculus]
          Length = 265

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 27/166 (16%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      ++   L+      V PQ LK  LEN  +        
Sbjct: 76  DMEWPPIYKPGKRSRVAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKK------ 129

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 130 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANE-KLKCAETWSLNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
           +      +  +    R               Y   D      I+++
Sbjct: 175 VKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQK 220


>gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
 gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
          Length = 1463

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPS 107
             + Q  +E  ++    +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 491 KQVLQEFQEFCQD--TVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEFARNLYPEY 548

Query: 108 ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                 +   L       G  L          E          +E    
Sbjct: 549 ------KRHGLGPLTKRFGVALDHHHMANYDAEATGRLLFIFIKEVAEK 591


>gi|228984721|ref|ZP_04144893.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774919|gb|EEM23313.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 934

 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      ++              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|315179370|gb|ADT86284.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218]
          Length = 234

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 11/98 (11%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-NLDIPIH------RWIC 95
            L D      + +   + +      +VAHN+ F+   +   F  L IP        +   
Sbjct: 65  FLVDKPEYKDVHEEFLDFIR--GAELVAHNAPFDVGFMDYEFSKLSIPTAKTDELCKVTD 122

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           TL +A+         L  + +   + +        L+ 
Sbjct: 123 TLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLD 160


>gi|229029323|ref|ZP_04185411.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1271]
 gi|228731982|gb|EEL82876.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1271]
          Length = 934

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      ++              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEVHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|153808691|ref|ZP_01961359.1| hypothetical protein BACCAC_02990 [Bacteroides caccae ATCC 43185]
 gi|149128517|gb|EDM19735.1| hypothetical protein BACCAC_02990 [Bacteroides caccae ATCC 43185]
          Length = 1268

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|322831648|ref|YP_004211675.1| DNA polymerase III, subunit epsilon [Rahnella sp. Y9602]
 gi|321166849|gb|ADW72548.1| DNA polymerase III, epsilon subunit [Rahnella sp. Y9602]
          Length = 245

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 44/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 9   RIVVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVVNRRLTGRNFHVYLKPDRLVDP 62

Query: 41  PVELWDCVHDPVMPQVLKEALEN---------TDVTIVAHNSYFERTVLKA---CFNLDI 88
                  + D  +    K    +             +V HN+ F+   +         ++
Sbjct: 63  EAFGVHGISDEFLAD--KPTFADVADDFIEYIRGGELVIHNATFDIGFMDYEFDMLGRNL 120

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           P          +L +AR         L A+ +   + + K      L+ 
Sbjct: 121 PKTETFCKITDSLAMARKLFPGKRNNLDALSDRYLIDNSKRTLHGALLD 169


>gi|310658999|ref|YP_003936720.1| DNA polymerase III polc [Clostridium sticklandii DSM 519]
 gi|308825777|emb|CBH21815.1| DNA polymerase III PolC [Clostridium sticklandii]
          Length = 1417

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 42/169 (24%), Gaps = 20/169 (11%)

Query: 3   TLFIDFETR----SPIDLTKCGICKYAEDVCVILFA----------FGFDDHPVELWDCV 48
            +  D ET     +  ++T+ G  K      +  F               +      D +
Sbjct: 406 YVVFDIETTGFSNTSDEITEIGAVKIRNKEIIDSFGELINPHMPIPLKVQELTGITNDLI 465

Query: 49  HDPVMPQVLKE-ALEN-TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSN 103
            D      +    LE      +VAHNS F+   +       NL         TL L+R  
Sbjct: 466 KDKPSIDEVLPRFLEFVGSSILVAHNSDFDMGFIRAKAKRLNLAFENKDI-DTLKLSRIL 524

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
                   +          +E     +            +     +   
Sbjct: 525 LPNLKRHKLNLITNHLGISLENHHRAVDDAKATALVFIKFMEMLIDKDI 573


>gi|228952021|ref|ZP_04114116.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228957917|ref|ZP_04119657.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801833|gb|EEM48710.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228807553|gb|EEM54077.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 934

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|210634765|ref|ZP_03298293.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279]
 gi|210158705|gb|EEA89676.1| hypothetical protein COLSTE_02220 [Collinsella stercoris DSM 13279]
          Length = 975

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 46  DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           D  H P   + +   L +      ++AHN+ F+R  ++A          WI +L L+R  
Sbjct: 105 DVAHAPSAEEAVAR-LADFVGGAPVIAHNAAFDRGFIEAVSGGAEVTDIWIDSLALSRIA 163

Query: 104 GL---PSALKAVGEALK 117
                   L ++ E   
Sbjct: 164 LPRLSSHKLASMAELFG 180


>gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087]
          Length = 1462

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG 113
               +G
Sbjct: 548 KRHGLG 553


>gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
 gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus downei F0415]
          Length = 1468

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPSA 108
            + +  +E  ++    +VAHN+ F+   +       D+P+     I TL  AR+      
Sbjct: 497 QVLEEFQEFCQD--TVLVAHNATFDVGFMNANYERHDLPLISQPVIDTLEFARNLYPEYK 554

Query: 109 LKAVG 113
              +G
Sbjct: 555 RHGLG 559


>gi|238853258|ref|ZP_04643643.1| DNA polymerase III alpha chain [Lactobacillus gasseri 202-4]
 gi|238834142|gb|EEQ26394.1| DNA polymerase III alpha chain [Lactobacillus gasseri 202-4]
          Length = 177

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYA-EDVCVI-----LF--AFGFDDHPVELW-----DC 47
           M    +DFET +    + C +      +  ++     +      FD   + +      D 
Sbjct: 1   MNFTAMDFETANSHPESACSLALVMVRNNEIVDRFYTVINPQMPFDSRNIRVHGITAEDV 60

Query: 48  VHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARS 102
            + P M +V  +   L    + + AHN+ F+  V++     +N+  P +  I TL  +++
Sbjct: 61  KNAPTMAEVWPKIKKLYQPGMLVAAHNARFDCRVMEKSLARYNIPAPHYFAIDTLATSKA 120

Query: 103 NG---LPSALKAVGEALKLS 119
                    L  V EAL ++
Sbjct: 121 FEPNLPNHKLDTVSEALDIN 140


>gi|229126955|ref|ZP_04255966.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-Cer4]
 gi|228656555|gb|EEL12382.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-Cer4]
          Length = 934

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|229144240|ref|ZP_04272654.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST24]
 gi|228639248|gb|EEK95664.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           BDRD-ST24]
          Length = 934

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|209879355|ref|XP_002141118.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209556724|gb|EEA06769.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 1734

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/256 (8%), Positives = 63/256 (24%), Gaps = 28/256 (10%)

Query: 295 VEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDP 354
            + + ++G L     + G  R    +      Q+ P        + Q+I +         
Sbjct: 395 PQILYTEGWLHKKFYYHGLCRP--LTSSNPNLQSYP----PVGGIQQVIPNDTQEEIEQT 448

Query: 355 DPLQIISDCVRSCVI----------ASEGKKLVVADLAGIEARVLAWMAGEQWK------ 398
             + + +D +R+ +I           +    ++  D        L      +        
Sbjct: 449 SGVTVAADSIRAALINSLNLARSSQPAADMAILAWDYTLEGYARLRAQQLCEEIDTNITL 508

Query: 399 ----LKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMAST 454
                            +    F  + +    +     + ++L LG     +    +A +
Sbjct: 509 GSAQNYPPYVQWPFRGGSGETIFRYSESVTVPEDADEFESIQLQLG-SLETEELVNLAVS 567

Query: 455 TGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKH 514
           T +                +           +       I         + V       +
Sbjct: 568 TWVKEGETFDFYYPEKNIGKDFTNFIMVTRAEATAVGCGISTNCKYQNSKSVLVCQFN-Y 626

Query: 515 SRVSELWNELHQAFEQ 530
             + +L ++   A  +
Sbjct: 627 PNIKQLIHQQESALRR 642


>gi|206970727|ref|ZP_03231679.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH1134]
 gi|229078824|ref|ZP_04211377.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock4-2]
 gi|229178049|ref|ZP_04305421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           172560W]
 gi|206734363|gb|EDZ51533.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH1134]
 gi|228605537|gb|EEK62986.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           172560W]
 gi|228704506|gb|EEL56939.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock4-2]
          Length = 934

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|296502210|ref|YP_003663910.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171]
 gi|296323262|gb|ADH06190.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171]
          Length = 934

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|229189723|ref|ZP_04316737.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           10876]
 gi|228593772|gb|EEK51577.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
           10876]
          Length = 934

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|74142907|dbj|BAE42489.1| unnamed protein product [Mus musculus]
          Length = 862

 Score = 38.9 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 51/203 (25%), Gaps = 29/203 (14%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      +    L+      V PQ LK  LEN  +        
Sbjct: 76  DMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKK------ 129

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 130 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANE-KLKCAETWSLNGL 174

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYL 188
           +      +  +    R               Y   D      I+++L  L    Q     
Sbjct: 175 VKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTAQVFALN 234

Query: 189 DQTINDRGYCVDVALAHTLNQIV 211
               N           +++++ +
Sbjct: 235 KAEENLPLEM--KKQLNSISEEM 255


>gi|67539020|ref|XP_663284.1| hypothetical protein AN5680.2 [Aspergillus nidulans FGSC A4]
 gi|40743583|gb|EAA62773.1| hypothetical protein AN5680.2 [Aspergillus nidulans FGSC A4]
 gi|259484846|tpe|CBF81416.1| TPA: 3'-5' exonuclease/helicase (Wrn), putative (AFU_orthologue;
          AFUA_7G04270) [Aspergillus nidulans FGSC A4]
          Length = 320

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 50 DPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLD 87
          D ++P  LK  +EN  +T    N   + T L+    ++
Sbjct: 43 DDLVPAKLKSIVENPGITKTGVNIRADCTRLRKYLGIN 80


>gi|317505657|ref|ZP_07963560.1| exonuclease [Prevotella salivae DSM 15606]
 gi|315663242|gb|EFV03006.1| exonuclease [Prevotella salivae DSM 15606]
          Length = 175

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 23/141 (16%)

Query: 1   MATLF-IDFETRSPIDLTKCGICK-YAEDVCVILFAFG-FDDHPVELW------------ 45
           M     IDFET +    + C +      +  ++   +      P                
Sbjct: 14  MKDFAAIDFETANGKRTSVCSVGVVIVRNGMIVDRFYSLIHPEPDYYTYWNTKMHGLTQA 73

Query: 46  DCVHDPVMPQVLKEA--LENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA 100
           D  + P+ P+V ++   L +  + +VAHN  F+ + LK    C+ +  P + + CTL+ +
Sbjct: 74  DTNNAPIFPEVWRKIMPLID-QLPLVAHNKAFDESCLKAVFKCYQMTYPDYIFHCTLLKS 132

Query: 101 RSNGL--PSALKAVGEALKLS 119
           RS        L  +      +
Sbjct: 133 RSVWPQGRHNLGIIAARCGYN 153


>gi|281202348|gb|EFA76553.1| DNA polymerase III [Polysphondylium pallidum PN500]
          Length = 725

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 32/153 (20%)

Query: 2   ATLFIDFETRS---PIDLTKCGICKYAEDVCVILFAF-GFDDHPVELWD----------- 46
             +  D ET        + + G  +           F  +     ++             
Sbjct: 320 RVVCFDLETSGFGPDDSIIEIGAVELINGCR-TGLTFQSYAKPKTQIHPAAEQIHQLSNF 378

Query: 47  CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKACF-----NLDIPIHRWICTLVL 99
            + D    + +  +  +   D  +VAHN  F+R +L           DI  H+  CT+  
Sbjct: 379 LLQDAPPIEFVLSSFMDFVGDSILVAHNLAFDRRMLIQELVRSKTPFDIN-HKCFCTM-- 435

Query: 100 ARSN-----GLPSALKAVGEALKLSSQKMEEGK 127
            R           +L ++ + LK++   +    
Sbjct: 436 -RYFRKMYKDSNYSLDSISQQLKINKLLLRRTH 467


>gi|46205675|ref|ZP_00048217.2| hypothetical protein Magn03001139 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 255

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 64  TDVTIVAHNSYFERTVLKACFNL-----DIPIHRWICT-LVLARSNGLPSALKAVGEALK 117
               +VAHN+ F+   L+A          I     +CT  + +R      AL A   A+ 
Sbjct: 3   PGRVLVAHNAAFDTRFLRAEIGRAGIAAAIDPVACLCTQQLASRYLTGSRALAACCAAVG 62

Query: 118 LSSQ 121
           +   
Sbjct: 63  VVHD 66


>gi|313206803|ref|YP_004045980.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer DSM
           15868]
 gi|312446119|gb|ADQ82474.1| DNA polymerase III, epsilon subunit [Riemerella anatipestifer DSM
           15868]
 gi|315023876|gb|EFT36878.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM]
 gi|325335757|gb|ADZ12031.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
           [Riemerella anatipestifer RA-GD]
          Length = 407

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 68/217 (31%), Gaps = 23/217 (10%)

Query: 51  PVMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL- 105
           P   ++ K  +E     T+V HN  F+  +L+           I     T+ LA+     
Sbjct: 65  PKFHEIAKRIIEITEGSTLVGHNVDFDYRMLRQSFKRLGYHFSIETL-DTIPLAKKLIPN 123

Query: 106 --PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL--FGEYC 161
               +L  + ++L +   +                     D++    +  +       Y 
Sbjct: 124 EESYSLGKLVKSLGIPLAEHHRASSDARATLDLFKLLMTKDKDNEIIQSHFEEANAKTYF 183

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
                +T+++      +  ++     +   + D  Y     + +  ++     + +++Q 
Sbjct: 184 NKIKALTQDLPAERGIVYFQDARGKVILSEVTDGIYKFAKKVFNAKSKKWQKIQNEVEQI 243

Query: 222 LESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETT 258
              L                 LF +  ++ + L +TT
Sbjct: 244 SYELVASE-------------LFAKLIMNTKGLAKTT 267


>gi|145580424|pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
 gi|145580425|pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii
           Exonuclease Domain From Thermotoga Maritima
          Length = 186

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL- 105
             +       LE++   IVAHN+ F+   L    K    LD     +I TL LA+S    
Sbjct: 80  EEVLPEFLGFLEDS--IIVAHNANFDYRFLRLWIKKVMGLDWE-RPYIDTLALAKSLLKL 136

Query: 106 -PSALKAVGEALKLSS 120
              +L +V E L L  
Sbjct: 137 RSYSLDSVVEKLGLGP 152


>gi|110804261|ref|YP_687782.1| DNA polymerase III subunit epsilon [Shigella flexneri 5 str. 8401]
 gi|110613809|gb|ABF02476.1| DNA polymerase III, epsilon subunit [Shigella flexneri 5 str. 8401]
          Length = 246

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 48/186 (25%), Gaps = 43/186 (23%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 10  RQIVLDTETTGMNQI-----GAHYEGHKIIEIG-AVEVVNRRLTGNNFHVYLKPDRLVDP 63

Query: 41  PVELWDCVHDPVMPQ-----VLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPI 90
                  + D  +        + +   +      +V HN+ F+   +         DIP 
Sbjct: 64  EAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPK 123

Query: 91  HRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
                    +LV+AR        +L A+    ++ + K      L+      E +  +  
Sbjct: 124 TNTFCKVTDSLVVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTG 183

Query: 145 RNKPNH 150
                 
Sbjct: 184 GQTSMA 189


>gi|42780745|ref|NP_977992.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus ATCC 10987]
 gi|42736665|gb|AAS40600.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
           cereus ATCC 10987]
          Length = 934

 Score = 38.9 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      ++              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|312110481|ref|YP_003988797.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y4.1MC1]
 gi|311215582|gb|ADP74186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
           Y4.1MC1]
          Length = 921

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 54/197 (27%), Gaps = 30/197 (15%)

Query: 1   MA--TLFIDFETRSPID-----LTKCGICKYAEDVCVI-LFAFGFDDH---PVELWDCVH 49
           M    + +D ET   +      + + G+    E+  +I  F+  F+     P  +    +
Sbjct: 1   MKDRFVIMDLETTGNVPKKGDRIIQLGM-VVVENGQIIERFSSFFNPERDIPPFVQQLTN 59

Query: 50  -DPVMPQVLKEALENTDVT---------IVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
            +  M                        VAHN  F+   L+               I T
Sbjct: 60  INEQMVAD-APVFAEEAAKVVDMLQQSYFVAHNVSFDLQFLQEELHMAGFPPFSGPTIDT 118

Query: 97  LVLARSNGL---PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPN-HRE 152
           + LAR          L  + + L ++  +            K         R  P    +
Sbjct: 119 VELARIVFPDAESYKLADLAKLLCIAHDQPHHADSDAEVTAKLFIALLDRLRQLPLVTLQ 178

Query: 153 AWRLFGEYCKGDVTVTR 169
             +    Y K D+    
Sbjct: 179 HLKRLSAYLKSDLYSLL 195


>gi|120599313|ref|YP_963887.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
 gi|120559406|gb|ABM25333.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
          Length = 298

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 35/155 (22%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------------------ 43
             + +D ET      T   I   A    ++      +DHPV                   
Sbjct: 18  KFIALDAETTGLEAETDKIIEIAAIKFDLLS-----NDHPVFESLINPAVKVPRKITNIT 72

Query: 44  ------LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIHR-WIC 95
                 L D      + Q LK  + +  + IVA+N+ F++  L     N+ I ++  + C
Sbjct: 73  GITNKMLVDQPPFAELAQDLKAFIGD--LPIVAYNAKFDKGFLDAEFANVGIVLNNQYHC 130

Query: 96  TLVLARSNG--LPSALKAVGEALKLSSQKMEEGKE 128
            L LA++        L  V +   +   +    K 
Sbjct: 131 ALNLAKAAFSLPNYKLATVAKHCNIPLDEAHRAKA 165


>gi|319941413|ref|ZP_08015741.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
 gi|319805033|gb|EFW01863.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
          Length = 246

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 46/156 (29%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAED--VCVILFAF------GFDDHPVELWDCVHDPVM 53
             + +D ET         G+     D  + +   A         D+H ++++       +
Sbjct: 6   RLITLDTETT--------GLDAQNGDRIIEIGCVAIEGRMMRSTDEHHLQIFVNPERE-V 56

Query: 54  PQVLK-------EALEN---------------TDVTIVAHNSYFERTVLK----ACFNLD 87
           P+          E L++                  T+V HN+ F+   L      C    
Sbjct: 57  PEEAVAIHGITTEYLQDKPKFAEIADKFIDFVKGSTLVIHNAAFDTGFLDMELGRCGRGK 116

Query: 88  I-PIHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
           I    + I T+ LA+        +L ++    ++ +
Sbjct: 117 ISDYCQVIDTVKLAKKLLPGRAVSLDSLCRYYEIDN 152


>gi|255693699|ref|ZP_05417374.1| putative DNA polymerase III alpha subunit [Bacteroides finegoldii
           DSM 17565]
 gi|260620516|gb|EEX43387.1| putative DNA polymerase III alpha subunit [Bacteroides finegoldii
           DSM 17565]
          Length = 1268

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|261856008|ref|YP_003263291.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
           c2]
 gi|261836477|gb|ACX96244.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
           c2]
          Length = 481

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
               PV     +  LE   +  ++AHN+ F+   LK  F    +       +C++ L+R 
Sbjct: 80  VADQPVFAHRAQALLERLENHIVIAHNARFDLGFLKQAFRREGIRFNP-SVLCSVKLSRQ 138

Query: 103 NGL---PSALKAVGEALKLS 119
                    L +V + + LS
Sbjct: 139 MFPAERRHNLDSVMQRMGLS 158


>gi|55978361|ref|YP_145417.1| hypothetical protein TTHB178 [Thermus thermophilus HB8]
 gi|55773534|dbj|BAD71974.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 296

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 31/134 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILF--------------------AFGFDDHPVE 43
           + +D E  S        +   A D    +F                       ++++  +
Sbjct: 9   VALDLEATSTDPSEAEVLEVAAVDGEGRVFHRYLATQRPLPPDHEVFQLTGIPYEEYEAK 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHN-SYFERTVLKACF---NLDIPIHRWICTLVL 99
                      + L   L      ++ HN   ++  +L+       L       + TL L
Sbjct: 69  KV---APKEALEELLAFL--GGRPLLGHNLLRYDLPLLQRHLEEAGLPRWQGEALDTLRL 123

Query: 100 ARSNG--LPSALKA 111
           A       P  L+ 
Sbjct: 124 AHLLFPTPPGGLEG 137


>gi|330804902|ref|XP_003290428.1| hypothetical protein DICPUDRAFT_154946 [Dictyostelium purpureum]
 gi|325079439|gb|EGC33039.1| hypothetical protein DICPUDRAFT_154946 [Dictyostelium purpureum]
          Length = 175

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 30/95 (31%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-PVELWDCVHDPVMPQVLKE-- 59
            LF+D ET                       +   D+   V + D        +++    
Sbjct: 30  ILFLDTETT--------------------GLSVATDEIIEVSIIDLYDGSHFYKLINPTA 69

Query: 60  -------ALENTDVTIVAHNSYFERTVLKACFNLD 87
                  ++  +   I+AHN  F+R +L +    +
Sbjct: 70  TVSSTSASIHESGAYIIAHNEKFDRGILASQIGKN 104


>gi|227832929|ref|YP_002834636.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453945|gb|ACP32698.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 233

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 46/192 (23%), Gaps = 38/192 (19%)

Query: 2   ATLFIDFETRSPID-----------------------LTKCGICKYAEDVCVILFAFGFD 38
             L  D ET S                          L   G+    E   +        
Sbjct: 17  RMLSFDLETTSVKPKEARIVTSALVRIDGREVDKREMLADPGVEIPEEAAKIHGIT---- 72

Query: 39  DHPVELWDCVHDPVMPQVLKEALE--NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                     H+ V+ + +    +  +  +T++ +N+ ++ +VL+A              
Sbjct: 73  TEKARAEGRPHEEVLKETVDSIYQAWDEGLTLIVYNAAYDLSVLRALTGDFTVNGPVFDP 132

Query: 97  LVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN--KPNH 150
            V+ R           L+ V     +    +    E  A             R       
Sbjct: 133 FVIDRVKDKWRKGKRTLEEVSAHYGVE---LSNAHEATADALAAARVAWKQVRQHFPELA 189

Query: 151 REAWRLFGEYCK 162
           +       EY  
Sbjct: 190 QMDSNELMEYQA 201


>gi|218896571|ref|YP_002444982.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus G9842]
 gi|218545327|gb|ACK97721.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus G9842]
          Length = 934

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|218230901|ref|YP_002366323.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus B4264]
 gi|228907275|ref|ZP_04071134.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 200]
 gi|229069194|ref|ZP_04202485.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           F65185]
 gi|218158858|gb|ACK58850.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus B4264]
 gi|228713946|gb|EEL65830.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           F65185]
 gi|228852329|gb|EEM97124.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 200]
          Length = 934

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|157962223|ref|YP_001502257.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC
           700345]
 gi|157847223|gb|ABV87722.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC
           700345]
          Length = 242

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 42/156 (26%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAED--VCVILF-------------------------A 34
             + +D ET     + +     Y     + +                            A
Sbjct: 9   RQIILDTETTG---MNQSSGPIYLGHRIIEIGCVEVVNRRLTGRHYHEYINPQQPIDEEA 65

Query: 35  FGFDDHPVELW-DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR- 92
                   E   D      + Q   E ++  ++  VAHN+ F+ + +   F++  P+   
Sbjct: 66  IAVHGITNEFVADKPKFHEVAQSFIEFIDGAEI--VAHNANFDVSFMDHEFSMLQPLGPK 123

Query: 93  ------WICTLVLARSNGLPS--ALKAVGEALKLSS 120
                  + +L +A+         L A+ +   + +
Sbjct: 124 TADICQILDSLAIAKHLHPGQKNNLDALCKRYGIDN 159


>gi|325856853|ref|ZP_08172351.1| 3'-5' exonuclease [Prevotella denticola CRIS 18C-A]
 gi|325483226|gb|EGC86203.1| 3'-5' exonuclease [Prevotella denticola CRIS 18C-A]
          Length = 224

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 58/208 (27%), Gaps = 30/208 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID ETR         + +  +   V L      D  V     ++   +P  +K  L
Sbjct: 46  DIIGIDTETR--------PVFRKGQHHKVALLQAC--DREVCFLFRLNIIGIPDCVKRFL 95

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+T V  V  +   +  +L            +I              L+   ++L +   
Sbjct: 96  EDTTVPKVGLSLGDDMLML--HQRSAFKPGYFID-------------LQDYVKSLGIEDM 140

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
            +++    +      E        +   ++        Y   D      +++RL      
Sbjct: 141 SLQKLYANV----FHERITKREQLSNWENQILNDKQKLYASTDAWTCINLYERLHE-LKH 195

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQ 209
             +   +     +    +    A    +
Sbjct: 196 TGDYELVVVHEKEHTDSIQTEKATESIK 223


>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1459

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARS 102
             +   +  VL   LE  T  T+VAHN+ F+   +K       L+      I TL LAR+
Sbjct: 484 VANAEKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLEYSP-SVIDTLPLART 542

Query: 103 NGL---PSALKAVGEALKL 118
                    L  + +   +
Sbjct: 543 LLPELRGYGLANLVKYFGI 561


>gi|255038895|ref|YP_003089516.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
 gi|254951651|gb|ACT96351.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
           18053]
          Length = 174

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 22/143 (15%)

Query: 6   IDFETRSPIDLTKCGICKYAED--VCVILFAFGFDDHPVEL---------WDCVHDPVMP 54
           +D ET      ++             ++ F     +  + +          D       P
Sbjct: 5   VDIETTGGGGTSRITEIAVFRHDGARIVDFFHSLINPEIYIPPFITRLTGIDNEMVKDAP 64

Query: 55  -----QVLKEALENTDVTIVAHNSYFERTVLKACFNL--DIPIHRWICTLVLARSNGL-- 105
                Q    A+       VAHN+ F+   +K  F    +      +CT+ L+R      
Sbjct: 65  TFYEVQDAVRAMTRDA-WFVAHNAKFDYGFIKREFGALDEYFQRDLLCTVQLSRKIFPGL 123

Query: 106 -PSALKAVGEALKLSSQKMEEGK 127
              +L  + E+L++  +      
Sbjct: 124 KSYSLGNLCESLEIMIENRHRAH 146


>gi|207109869|ref|ZP_03244031.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_CA4C1]
          Length = 147

 Score = 38.9 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 42/150 (28%), Gaps = 14/150 (9%)

Query: 68  IVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS-QKMEEG 126
           I+ H+     + LKA + + +   R   T +LA             E +      K    
Sbjct: 10  IIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNP--------EKVGFDEVLKEYLK 61

Query: 127 KELI-ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQEL 185
           +ELI     K    +            A +   EY +        +          E   
Sbjct: 62  EELIPHEKIKDFKAKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAR----EVETPF 117

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVER 215
             +   +  +G+ +D      L Q    E 
Sbjct: 118 VKVLMGMEFQGFKIDAPYFKCLEQEFKNEL 147


>gi|325270548|ref|ZP_08137148.1| DNA-directed DNA polymerase III alpha subunit [Prevotella
           multiformis DSM 16608]
 gi|324987124|gb|EGC19107.1| DNA-directed DNA polymerase III alpha subunit [Prevotella
           multiformis DSM 16608]
          Length = 1239

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/115 (7%), Positives = 34/115 (29%), Gaps = 14/115 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLP 106
             +P  +K    +  +        ++   ++      + + +   +    ++L+R     
Sbjct: 720 DYIPDFIKRK-HDPSLVK------YDIPCMEKYLKDTYGITVYQEQV---MLLSRQLANF 769

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           +  ++      +  +K     ++  +F +         +        W  F  Y 
Sbjct: 770 TRGESDALRKAMGKKKKAIVDQMKPKFIRQGQENGHDPQILEKIWSDWEKFASYA 824


>gi|318041263|ref|ZP_07973219.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp.
           CB0101]
          Length = 304

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 25/116 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFGF----DDHPVELWDCVHD--- 50
             L +D ET          I   A    V    +L         + +P +  + +     
Sbjct: 74  RLLILDTETTGLDPQRDRCIELGAVLFDVPRRSVLSQVSLLLPCEQNPAQAVNGIDPRLT 133

Query: 51  ------PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH---RWICTL 97
                     Q  +  L  +DV +VAHN+ F+R      F +         W+C++
Sbjct: 134 QQPQPWQQGLQWFEALLAASDV-VVAHNAAFDRQW----FGIAPLPAIDKPWLCSM 184


>gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
 gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
          Length = 681

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 33/114 (28%), Gaps = 10/114 (8%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARS 102
             +   + QVLKE  E   D  +VAHN+ F+   +        +P      I TL  AR+
Sbjct: 485 VKNAKPLVQVLKEFQEFCKDTVLVAHNATFDVGFMNANYERHGLPKITQPVIDTLEFARN 544

Query: 103 NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL 156
                      +   L       G  L          E          +E    
Sbjct: 545 LYPEY------KRHGLGPLTKRFGVALEHHHMANYDAEATGRLLFIFIKEVAEK 592


>gi|302911223|ref|XP_003050445.1| hypothetical protein NECHADRAFT_48479 [Nectria haematococca mpVI
           77-13-4]
 gi|256731382|gb|EEU44732.1| hypothetical protein NECHADRAFT_48479 [Nectria haematococca mpVI
           77-13-4]
          Length = 542

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 49/197 (24%), Gaps = 33/197 (16%)

Query: 2   ATLFIDFE--TR---SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
             L  D E  T             + + A    + LF                D  +   
Sbjct: 187 KVLGFDLEWMTWARKPHGPRANVSLIQLASPSRIGLFHVAL---------FRSDDYVAPT 237

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            K+ +E+  VT V      + T LK    ++                   S +  + +  
Sbjct: 238 FKKIMEDESVTKVGVAIKGDCTRLKTHLGVETKG------------IFELSHMYKLVKYS 285

Query: 117 KLSSQKMEEGKELIARFCKGETH------ECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           KL  Q     K LI+   + E        +    R+             Y   D      
Sbjct: 286 KLG-QYDRINKSLISLAIQAEEFFGLPLYKGDSVRSSNWMSLLSAKQVTYSASDAYAGLN 344

Query: 171 IFKRLEPLSSKEQELWY 187
           +F  L+    K      
Sbjct: 345 LFYVLDQERQKLDPCPP 361


>gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
           15053]
 gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
           15053]
          Length = 1487

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
            +  P +   L   LE   D  +VAHN+ F+   +       ++         T+ ++R 
Sbjct: 507 VMDAPEIEAALPAFLEFAGDAALVAHNAGFDVGFIDQNCRYMDITPDFTAV-DTVAMSRI 565

Query: 103 NGLPSA---LKAVGEALKLSSQ 121
                +   L  V +AL +S +
Sbjct: 566 LLPTLSKFKLNVVAKALNISLE 587


>gi|57242277|ref|ZP_00370216.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis RM3195]
 gi|57016957|gb|EAL53739.1| DNA polymerase III epsilon subunit (dnaQ) [Campylobacter
           upsaliensis RM3195]
          Length = 260

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARS 102
           D  +   + +  +  L ++    VAHN  F+   +          I ++R ICT+  A+ 
Sbjct: 131 DAPNLTRVLEAFRLFLNDS--VFVAHNVKFDYNFISKSLYECGFGILLNRKICTVDFAQC 188

Query: 103 NG--LPSALKAVGEALKLS 119
                   L  + E LK+ 
Sbjct: 189 CIQSSHYKLDTLKEILKIE 207


>gi|332359968|gb|EGJ37782.1| DNA polymerase III PolC [Streptococcus sanguinis SK1056]
          Length = 866

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCQDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|261250461|ref|ZP_05943036.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260939030|gb|EEX95017.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 210

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 51/158 (32%)

Query: 4   LFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELW-----D 46
           + +D ET S       L      K  ++         V L A    D   V++      D
Sbjct: 31  VSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHHIRHQD 90

Query: 47  CVHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVL----KACFNLDIP------------ 89
                   Q L + LE   +  +V ++  +++ +L    +      +P            
Sbjct: 91  LADGIDEKQALIQLLEFIGNRPLVGYHIRYDKKILDLACRKQLGFPLPNPLIEVSQIYHD 150

Query: 90  ------IHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
                  + +              +L A+ + L L  Q
Sbjct: 151 KLEKHLPNAYFD-----------LSLDAICKHLDLPLQ 177


>gi|156053686|ref|XP_001592769.1| hypothetical protein SS1G_05690 [Sclerotinia sclerotiorum 1980]
 gi|154703471|gb|EDO03210.1| hypothetical protein SS1G_05690 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 603

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 51/192 (26%), Gaps = 20/192 (10%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVC-VILFAFGFDDHPV-ELWDCVHDPVMPQVL-- 57
             +  D E        K     Y      V L     ++              + Q++  
Sbjct: 205 KLIGFDIE-------WKADARVYDGAKKNVSLIQLATEERVGLFHIALFPQDKVSQLVAP 257

Query: 58  --KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEA 115
             K+ +E+ +VT V      + T L+     DI          L+    L     +  + 
Sbjct: 258 TMKKIMEDPEVTKVGVAISADCTRLRKYL--DIHSVSIF---ELSHLYRLVK--YSASQE 310

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRL 175
             L ++++    + +         +    R+    R        Y   D      ++  L
Sbjct: 311 YGLINKRLVSLAKQVEDHLHLPLFKGGSVRSSDWTRGLSIQQISYAASDSYAGYHLYNIL 370

Query: 176 EPLSSKEQELWY 187
           E        +  
Sbjct: 371 ESKRQALNPMPP 382


>gi|50122261|ref|YP_051428.1| DNA polymerase III subunit epsilon [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612787|emb|CAG76237.1| DNA polymerase III, epsilon chain [Pectobacterium atrosepticum
           SCRI1043]
          Length = 245

 Score = 38.9 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHKIIEIG-AVEVINRRLTGRHFHVYIKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQV-----LKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPI 90
                  + D  +        + +   +      +V HN+ F+   +       N +IP 
Sbjct: 61  EAYNIHGISDEFLADKPTYADVADDFLDFIRGAELVIHNATFDIGFMDYEFRLLNRNIPK 120

Query: 91  HRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                    +L +AR         L A+ +   + + K      L+ 
Sbjct: 121 TETFCKITDSLFMARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLD 167


>gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B]
 gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum B str. Eklund 17B]
          Length = 1452

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 54/211 (25%), Gaps = 31/211 (14%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNGLPS 107
             +     E  E+    IVAHN+ F+   +K      N+   I   + T+ L R      
Sbjct: 505 ENILPKFMEFCED--TVIVAHNAAFDTGFIKKNCRDLNIRFDI-PILDTVTLCRFLYPEL 561

Query: 108 ---ALKAVGEALKLSSQK------------MEEGKELIARFCKGETHECLYDRNKPNHRE 152
               L  V + L +S +                 K         E ++     +    + 
Sbjct: 562 KKVKLNIVAKFLGISLENHHRAVDDAKATADILLKSFEKIEEDFEINDLKSLNDLFLSKV 621

Query: 153 AWRLFGEYCKGDVTVT-------REIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAH 205
             R    Y    +  T        ++  +    +   +           R   +  +   
Sbjct: 622 DIRKQPTYHIIILAKTQAGLKNLYKLISKSHIDNFFRRPRTPKTLLSEFREGLIIGSACE 681

Query: 206 T---LNQIVDVERTKLDQELESLTYGLVSSS 233
                  +++       +E+      +    
Sbjct: 682 AGEVYKAVLEGRSDDEIKEIIEFYDYVEIQP 712


>gi|75760399|ref|ZP_00740443.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492110|gb|EAO55282.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 934

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|309379715|emb|CBX21704.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 326

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 15/97 (15%)

Query: 28  VCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF--- 84
             +   +         + D      +   L   L      ++AHNS F+ T LK  F   
Sbjct: 69  AELTGIS------DGMVVDAPVFAEIAGELFSVL--KGCVLIAHNSRFDYTFLKHEFHRA 120

Query: 85  NLDIPIHRWICTLVLARSNGL---PSALKAVGEALKL 118
            +       +C++ L+R         +L ++ E L +
Sbjct: 121 GIGFS-SPALCSVQLSRCLYPQFYKHSLDSIIERLGI 156


>gi|228900222|ref|ZP_04064453.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 4222]
 gi|228859391|gb|EEN03820.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis IBL 4222]
          Length = 934

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 686

 Score = 38.6 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 51  PVMPQVLKEALEN-TDVTIVAHNSYFERTVL-KACFNLDIP--IHRWICTLVLARSNGLP 106
           P + + L + +E   D  +VAHN+ F+   +     N+ +P   +  + TL LAR     
Sbjct: 484 PDIAEELPKFVEFVGDAVLVAHNARFDMGFIQANLKNIGMPELPNPSLDTLELARLLFPS 543

Query: 107 ---SALKAVGEALKLS 119
                L  + +  K+S
Sbjct: 544 LKNHRLNTLADKFKVS 559


>gi|324504376|gb|ADY41890.1| Exonuclease mut-7 [Ascaris suum]
          Length = 953

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 96/343 (27%), Gaps = 45/343 (13%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAF---GFDDHPVELWDCVHDPVMPQVLKE 59
            + ID E   P+ L+        E V ++  +     +    V+L D V +    +  K 
Sbjct: 440 IIGIDTE-WKPMFLSTV------EQVALLQVSIPSCSYLVDVVKLEDEVSEEEWIEFFKA 492

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNL----DIPIHRWICTLVLARSN--GLPSALKA-V 112
                    +  +   +  VL+A F         +   IC + LA S      ++L    
Sbjct: 493 LFCTESSIKLGFDFANDMRVLRATFPFLESMQPDMKNVICIMKLATSLMSENSASLDLPT 552

Query: 113 GEALKLSSQKMEEGK-------------ELIARFCKGETHECLYDRNKPNHREAWRLFGE 159
           GEA    S +    +             +L  R       +     N             
Sbjct: 553 GEAHGSDSNENTTDESPSDEQQLHFKLTDLCYRILGEPLDKREQIGNWAMRPLRPEQMK- 611

Query: 160 YCKGDVTVTREIFKRLEPLS--------SKEQELWYLDQTINDRGYCVDVALAHTLNQIV 211
           Y   D     +I+ R++  +            E   + Q    +            +  +
Sbjct: 612 YAAMDAYCLIKIYDRMKARATEEFGMNWQTHLEKSDVIQVKPKQPKKGKKKATRVDDNEL 671

Query: 212 DVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTP 271
                +++  ++  T      S     + + +F   G HL      T   +L+  +    
Sbjct: 672 QQMMERVNAAIDESTANGQRPSNVKVIVDSMMFG-LGKHLRRCGIDT---ILAETRDSLV 727

Query: 272 QAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLRGTLQFLGAS 314
           +  +    R     ++    + L+      G  R        +
Sbjct: 728 ECAKKERERYIL--TSGKAYDELLRNRALCGSNRILCVPAIQT 768


>gi|294674564|ref|YP_003575180.1| DNA polymerase III subunit alpha [Prevotella ruminicola 23]
 gi|294473595|gb|ADE82984.1| DNA polymerase III, alpha subunit [Prevotella ruminicola 23]
          Length = 1243

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/94 (8%), Positives = 28/94 (29%), Gaps = 9/94 (9%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGK 127
             ++   ++      + + +   +    ++L+R         ++      +  +K +   
Sbjct: 739 ITYDIDCMEKYLKDTYGITVYQEQV---MLLSRQLADFTRG-ESDALRKAMGKKKKDIVD 794

Query: 128 ELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            +  +F +G        +        W  F  Y 
Sbjct: 795 AMKPKFIEGGKKNGHDPKVLEKIWADWEKFASYA 828


>gi|261253702|ref|ZP_05946275.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
 gi|260937093|gb|EEX93082.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891]
          Length = 223

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 13/99 (13%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIH--------RWI 94
            L D      +     + +      +VAHN+ F+   +   F + +           +  
Sbjct: 56  FLVDKPEYQDVHAEFLDFI--KGAELVAHNAPFDTGFMDYEFGM-LDPTIGKTDDYCKVT 112

Query: 95  CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
            TL +A+         L  + +   + +        L+ 
Sbjct: 113 DTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLD 151


>gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum D str. 1873]
 gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum D str. 1873]
          Length = 1443

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 23/138 (16%)

Query: 4   LFIDFETR---SPID-LTKCGICKYAEDVCVILFAFGFDDH-PVEL----------WDCV 48
           +  D ET    S  D + + G  K      +  F+   +    +             D  
Sbjct: 431 VVFDLETTGFSSEYDKIIEIGAVKIKNGNIIDSFSTFVNPEIKIPYNITELTSITNDDVK 490

Query: 49  HDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKACFN---LDIPIHRWICTLVLARSNG 104
           +   +  VL + +E   D  +VAHN+ F+ + ++   N   +DI  +  + T+ LA+   
Sbjct: 491 NADTIDNVLPKFMEFCKDSVLVAHNANFDMSFIRKNCNDLSIDIN-YTVMDTVPLAKFLF 549

Query: 105 LP---SALKAVGEALKLS 119
                  L  + + L +S
Sbjct: 550 PELKRYKLNTIAKHLGVS 567


>gi|229109097|ref|ZP_04238697.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-15]
 gi|228674375|gb|EEL29619.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           Rock1-15]
          Length = 934

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQVGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|325955054|ref|YP_004238714.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
 gi|323437672|gb|ADX68136.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
          Length = 453

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL--- 105
            + + + E  E+    +V HN  F+  +L+        D     WI T   A+       
Sbjct: 69  EIAKRIVEITED--CILVGHNVKFDYRMLRQEFKKLGYDYE-KDWIDTFEFAQKLIPNME 125

Query: 106 PSALKAVGEALKLS 119
             +L  +  AL + 
Sbjct: 126 SYSLGKLTNALGIP 139


>gi|260592844|ref|ZP_05858302.1| 3'-5' exonuclease domain protein [Prevotella veroralis F0319]
 gi|260535214|gb|EEX17831.1| 3'-5' exonuclease domain protein [Prevotella veroralis F0319]
          Length = 220

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D ETR    + K G  +      V L      DH V     ++    P  +K  L
Sbjct: 46  DIIGVDTETR---PVFKKGHRR-----KVALLQAC--DHEVCFLFRLNYIGFPDCIKRFL 95

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+T V  V  +   +  +L      +     +I              L+   ++L +   
Sbjct: 96  EDTTVPKVGLSLSDDMLML--HQRANFKPGYFID-------------LQDYVKSLGIEDM 140

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
            +++    +      E        +   +         Y   D     ++++RL  +  
Sbjct: 141 SLQKLYANV----FHERITKRQQLSNWENEVLNDKQKLYASTDAWTCIKLYERLHEMKE 195


>gi|260174216|ref|ZP_05760628.1| DNA polymerase III alpha subunit [Bacteroides sp. D2]
 gi|315922485|ref|ZP_07918725.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696360|gb|EFS33195.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1268

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFVEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|126030364|pdb|2E6L|A Chain A, Structure Of Mouse Wrn Exonuclease Domain
 gi|126030365|pdb|2E6M|A Chain A, Structure Of Mouse Werner Exonuclease Domain
          Length = 208

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 41/166 (24%), Gaps = 27/166 (16%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           D+    I K  +   V +      +    L+      V PQ LK  LEN  +        
Sbjct: 46  DMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKK------ 99

Query: 75  FERTVLKACFNLDIPIHRW-----ICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
                      + I   +W         + +        L  V    KL   +      L
Sbjct: 100 ---------AGVGIEGDQWKLLRDFDVKLESFV-----ELTDVANE-KLKCAETWSLNGL 144

Query: 130 IARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVTVTREIFKR 174
           +      +  +    R               Y   D      I+++
Sbjct: 145 VKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQK 190


>gi|154249219|ref|YP_001410044.1| RecB family-like nuclease [Fervidobacterium nodosum Rt17-B1]
 gi|154153155|gb|ABS60387.1| nuclease (RecB family)-like protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 396

 Score = 38.6 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 45/191 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           +++D E+ +P D     +    E+   I F    D                + + + LE 
Sbjct: 224 IYLDIESYTPFDFDY--LFGVLENGRYIPF-LATDPSKERY--------TFENIVKYLEK 272

Query: 64  TDVTIV-AHNSYFER---TVLKACFNLDIPIHRWICTLVLARSNG-------------LP 106
               I   HN  +E      L   + +++         +L+R                  
Sbjct: 273 RQQPIYHFHN--YEIMRFKKLSKKYGVNLSKE------LLSRFVDVYKIYAGHVALPIPS 324

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
            +LK++      + +    G  +I  + +                   +   +Y + DV 
Sbjct: 325 YSLKSIARFFGFNWRTDINGLSVINYYREYLATNNKSI---------LKEILKYNEDDVR 375

Query: 167 VTREIFKRLEP 177
            T  I K+L  
Sbjct: 376 ATEFIVKKLNE 386


>gi|229121184|ref|ZP_04250421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           95/8201]
 gi|228662303|gb|EEL17906.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           95/8201]
          Length = 934

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      ++              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|301053179|ref|YP_003791390.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|300375348|gb|ADK04252.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 934

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      ++              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|91214924|ref|ZP_01251896.1| hypothetical protein P700755_11542 [Psychroflexus torquis ATCC
           700755]
 gi|91186529|gb|EAS72900.1| hypothetical protein P700755_11542 [Psychroflexus torquis ATCC
           700755]
          Length = 237

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 47/180 (26%), Gaps = 33/180 (18%)

Query: 21  ICKYAEDVCVILFAFGF----DDHPVELWDCVHDPV--MPQVLKEALEN----TDVTIVA 70
              +AE   ++  + G+     +         +     + +  K  +EN        +  
Sbjct: 56  AGIWAEFGKIVCISVGYFNFKGNERKFRTTSFYGEETDLLKRFKLLVENYFSLPHHLMCG 115

Query: 71  HNSY-FERTVLKACF---NLDIPIHRWICTLVLARSNGLPS------ALKAVGEALKLSS 120
           HN+  F+   +        + +P          ++             L  +        
Sbjct: 116 HNAKEFDFPYIARRMLIRGIALP----------SQLQFFGKKPWEIPHLDTLELWKFGDY 165

Query: 121 QKMEEGKELIARFCKGE---THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
           +     K L   F         +    R+     +       YC+ DV    ++  +L  
Sbjct: 166 KHYTSLKLLTELFNIPSPKDDIDGSQVRDVFYKEKDLDRIVTYCEKDVIAVAQLILKLRQ 225


>gi|224070913|ref|XP_002303293.1| predicted protein [Populus trichocarpa]
 gi|222840725|gb|EEE78272.1| predicted protein [Populus trichocarpa]
          Length = 975

 Score = 38.6 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 50/184 (27%), Gaps = 30/184 (16%)

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
           K +E  +L+      +       R   +         EY +   T+ R+++   +   + 
Sbjct: 376 KADEIAKLMNENEHLKIVIEELKRKSNDAEIESLR-EEYHQRVATLERKVYALTKERDTL 434

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKT 241
                               AL    ++I++    + ++  +       +  +   +++ 
Sbjct: 435 ---------RREHNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQESTIRKLRAQIRE 485

Query: 242 WLFLETGLHLE-----------DLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
               + GL  +              +T  + +L    +               S   +  
Sbjct: 486 LEEEKKGLMTKVQVEENKVESIKKDKTATENLLQETIEKHQA---------ELSAQKIYY 536

Query: 291 LNTL 294
            N L
Sbjct: 537 TNAL 540


>gi|291614659|ref|YP_003524816.1| 3'-5' exonuclease [Sideroxydans lithotrophicus ES-1]
 gi|291584771|gb|ADE12429.1| 3'-5' exonuclease [Sideroxydans lithotrophicus ES-1]
          Length = 220

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 41/170 (24%), Gaps = 27/170 (15%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            +  D E+R             +E   V+ FA         L+   H       L E L+
Sbjct: 46  IVGFDTESR-----PTFVTGDVSEGPHVVQFAL---HDKAYLFQV-HREDGLPFLVELLQ 96

Query: 63  NTDVTIVAHNSYFER-TVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           + +V  V      +   +      L +     +              +K   + +     
Sbjct: 97  SDEVIKVGFGLKSDSGHIFNK---LGVRFGAVVD-------LNTVFNMKGYRKEMG---A 143

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
           +   G     RF K +                      Y   D     ++
Sbjct: 144 RAAVGLVFNQRFAKSKKITTTDWSQ----PRLTHQQILYAANDAYAALKV 189


>gi|52425625|ref|YP_088762.1| DNA polymerase III subunit epsilon [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307677|gb|AAU38177.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 260

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 51/159 (32%), Gaps = 10/159 (6%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIP---IHRWICTLVLARSNGL 105
            + Q   + ++  ++ I  HN+ F+   +       ++D+    I     TL LAR    
Sbjct: 83  EVAQEFIDFIKGAELLI--HNAPFDVGFMDYEFRKHHIDVKTADICSVTDTLQLARQMYP 140

Query: 106 PS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
               +L A+ + L + + K      L+     G+ +  +         +      +    
Sbjct: 141 GKRNSLDALCDRLGIDNTKRVLHGALLDAEILGDVYLVMTGGQTSLFDDNEPELADIHSA 200

Query: 164 DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
              +  +   ++    S  Q      Q   +    ++  
Sbjct: 201 KAHILAQNADKVAHHLSLLQPTDEELQAHLEYIKLINKK 239


>gi|293189820|ref|ZP_06608534.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
 gi|292821235|gb|EFF80180.1| putative DNA polymerase III, epsilon subunit [Actinomyces
           odontolyticus F0309]
          Length = 540

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 42/142 (29%), Gaps = 28/142 (19%)

Query: 4   LFIDFETRSP---IDLTKCGICKYAEDVCVILFAFGFDDH--------------PVELWD 46
           + +D ET       ++T+ G  +  +   V  F+                    P  + D
Sbjct: 20  VVVDLETTGLGAGAEITEIGAVRIRDGAVVDEFSSLVKPSRPIPPFITSLTGITPAMVAD 79

Query: 47  CVHDPVMPQVLKEA--L-ENTDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLA 100
                 + +   E   L  +    +VAHN+ F+   L           P  R + TL LA
Sbjct: 80  ADPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRVVDTLALA 139

Query: 101 RS-----NGLPSALKAVGEALK 117
           R            L  V     
Sbjct: 140 RLALPRPLVRNHKLGTVASYFG 161


>gi|281423616|ref|ZP_06254529.1| DNA polymerase III, alpha subunit [Prevotella oris F0302]
 gi|281402168|gb|EFB32999.1| DNA polymerase III, alpha subunit [Prevotella oris F0302]
          Length = 1235

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/127 (8%), Positives = 33/127 (25%), Gaps = 10/127 (7%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           ++   ++      + + +   +    ++L+R     +  ++      +  +K      + 
Sbjct: 737 YDIPCMEKYLKDTYGITVYQEQV---MLLSRQLANFTRGESDALRKAMGKKKKAIVDAMK 793

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVT---REIFKRLEPLSSKEQELWY 187
            +F K         +        W  F  Y       T      ++     +    E   
Sbjct: 794 PKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYMKAHYPAEYMA 853

Query: 188 LDQTIND 194
              T   
Sbjct: 854 ALMTRRF 860


>gi|187735079|ref|YP_001877191.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
 gi|187425131|gb|ACD04410.1| 3'-5' exonuclease [Akkermansia muciniphila ATCC BAA-835]
          Length = 352

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 54/211 (25%), Gaps = 13/211 (6%)

Query: 15  DLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY 74
           DL    + +Y E   + L  +  +     +     + + P      L   +  +  H + 
Sbjct: 26  DLEADSLHRYQE--KICLIQYADETGSCLIDPLSIEDMGP--FYNWL--KETEVWMHGAD 79

Query: 75  FERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEA-LKLSSQKMEEGKELIAR 132
           ++ ++ +     +        T   AR  G     L A+ E    ++  K  +  +   R
Sbjct: 80  YDMSLFQNA--WETLPAMIWDTQTAARLLGFRQFGLAALVEHFHGITLSKSSQKADWARR 137

Query: 133 FCKGETHECLYDRNKPNHR--EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
                      +         +                 EI +     + +     + D 
Sbjct: 138 PLSPTMVTYALNDVNYMLDMADKLTAALRKKGRMGWFE-EICRHSMERARERHLAGHQDP 196

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
                   ++      L ++      +    
Sbjct: 197 WRIQGCGKLNRKGLAALREMWTWRDAEAKTW 227


>gi|163756168|ref|ZP_02163283.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
 gi|161323780|gb|EDP95114.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
          Length = 454

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 47/149 (31%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV--ELWDCVHDP----------- 51
           +D ET            KY E+  +   A + FD H V  +    V+             
Sbjct: 5   VDIETTG---------GKYNEEG-ITEIAIYRFDGHEVVDQFISLVNPEREIQPFVVNLT 54

Query: 52  --------------VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
                          + + + E  E+    IVAHN+ F+  +L+        +       
Sbjct: 55  GINSRMLRDAPKFYEVAKRIVEITED--CIIVAHNASFDYRILQLEFKRLGFEYKRKSL- 111

Query: 95  CTLVLARSNGL---PSALKAVGEALKLSS 120
           CT+ L++          L  +  AL +  
Sbjct: 112 CTVELSKKLIPEMESYKLGKLVRALGIPM 140


>gi|149020300|ref|ZP_01835192.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930602|gb|EDK81584.1| hypothetical protein CGSSp23BS72_05994 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 308

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 32/144 (22%)

Query: 4   LFIDFETRSPI--DLTKCGICKYAEDVCVILFAFGFDDHPVE--------------LWDC 47
           + +D ET +     L   G+ K+ +   V  F    +                   +   
Sbjct: 6   IALDVETANSFRGSLCSIGLVKFIDGQEVDSFYTLINPEEKFSSRNIKIHAIKPEDVIGA 65

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIHRW--ICTLVLAR--- 101
              P + + +   ++N  + IVAHN+ F+   L+      +IP       C    +    
Sbjct: 66  PTFPEVQKEIINFIDN--LPIVAHNARFDAYALQDVYLKYEIPFDNIQYFC----SYQVC 119

Query: 102 ---SNGLP-SALKAVGEALKLSSQ 121
                 LP   L  + E  K+S  
Sbjct: 120 KIILTDLPNHKLHTLAEHFKISLD 143


>gi|52143806|ref|YP_083022.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus cereus E33L]
 gi|51977275|gb|AAU18825.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
          Length = 934

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      ++              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|116334989|ref|YP_802484.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii
           PV]
 gi|116235270|dbj|BAF35118.1| DNA polymerase III epsilon subunit [Candidatus Carsonella ruddii
           PV]
          Length = 181

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 9/92 (9%)

Query: 67  TIVAHNSYFERTVLKA---CFNLDIPI----HRWICTLVLARSNGLPS--ALKAVGEALK 117
           TI+AHN+ F+   +       N  I         + +L+L R         L  +     
Sbjct: 86  TIIAHNAKFDINFINKEIYLTNFKIKKIQNYANILDSLLLFRKLYPRKKNNLNDLCLKFN 145

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPN 149
           L   K      L   F             K  
Sbjct: 146 LIKNKKRIHGALNDAFLLAVLIIKTGFIEKDF 177


>gi|49477263|ref|YP_035758.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196033564|ref|ZP_03100976.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus W]
 gi|218902753|ref|YP_002450587.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH820]
 gi|49328819|gb|AAT59465.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195993998|gb|EDX57954.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus W]
 gi|218538657|gb|ACK91055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
           cereus AH820]
          Length = 934

 Score = 38.6 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      ++              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|303237320|ref|ZP_07323890.1| DNA polymerase III, alpha subunit [Prevotella disiens FB035-09AN]
 gi|302482707|gb|EFL45732.1| DNA polymerase III, alpha subunit [Prevotella disiens FB035-09AN]
          Length = 1238

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/91 (8%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           ++   ++      + + +   +    ++L+R     +  ++      +  +K     ++ 
Sbjct: 737 YDIPCMEKYLKDTYGITVYQEQV---MLLSRQLANFTRGESDALRKAMGKKKKAIVDQMK 793

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            +F K         +        W  F  Y 
Sbjct: 794 PKFLKQGQENGHDPKILEKIWTDWEKFASYA 824


>gi|197286329|ref|YP_002152201.1| plasmid-related exonuclease [Proteus mirabilis HI4320]
 gi|194683816|emb|CAR44904.1| putative plasmid-related exonuclease [Proteus mirabilis HI4320]
          Length = 301

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 21/100 (21%)

Query: 6   IDFETRS----PIDLTKCGICK--YAEDVC-----VILFAFGFDDHP----------VEL 44
           +D ET         + + G+ K  Y+         + L +   D                
Sbjct: 55  LDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIIDLISLYEDPGKPIPELITELTGIT 114

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
            D V    +   L  +  + D  +VAHN+ F+R   +  F
Sbjct: 115 DDMVQGQHIDDSLVASWLSDDPLVVAHNAQFDRPFFENRF 154


>gi|256832621|ref|YP_003161348.1| 3'-5' exonuclease [Jonesia denitrificans DSM 20603]
 gi|256686152|gb|ACV09045.1| 3'-5' exonuclease [Jonesia denitrificans DSM 20603]
          Length = 406

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 47/170 (27%), Gaps = 21/170 (12%)

Query: 14  IDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNS 73
           +D  +    +Y +     L     +     L D          L   +     T + H +
Sbjct: 46  VDAERASGYRYGDRNY--LIQVRREGAGTFLIDPTAVDDF-SELNAVMAAD--TWIFHAA 100

Query: 74  YFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAV-GEALKLSSQKMEEGKELIA 131
             +   L+   +  +       T V AR  GL    L AV    L ++ +K    ++   
Sbjct: 101 IQDLGPLR---DQGLTPGTIFDTEVAARLLGLDRVNLAAVTAHFLGVTLEKQHSHQDWST 157

Query: 132 RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV---TREIFKRLEPL 178
           R                       L G+    +      TR++    E  
Sbjct: 158 RPLPSS--------WLTYAALDVELLGDLAISETDALTETRKLRWAHEEF 199


>gi|224372220|ref|YP_002606592.1| exonuclease family [Nautilia profundicola AmH]
 gi|223589909|gb|ACM93645.1| exonuclease family [Nautilia profundicola AmH]
          Length = 271

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 38/147 (25%)

Query: 36  GFDDHPVELWDCVHDPVMPQ---VLKEALENTDVTIVAHNSYFERTVLKACFNL-----D 87
            ++ H ++  D  H P   +      +  +N D  +V HN  ++  VLK          +
Sbjct: 150 AYEVHKIKQEDIEHKPTFAEKKDEFLQIFDNLD-MVVGHNVLYDFGVLKRELERAEHFPN 208

Query: 88  IPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNK 147
           I       T+  +             + + L  +KM   +E +A F           +N 
Sbjct: 209 IIDIPIFDTMYYS------------ADVVVLEKKKMPRLEECVAFFF--------GKQNA 248

Query: 148 PNHREAWRLFGEYCKGDVTVTREIFKR 174
             H             DV +T ++F R
Sbjct: 249 NYHD---------ALEDVKMTLKVFNR 266


>gi|194743298|ref|XP_001954137.1| GF18126 [Drosophila ananassae]
 gi|190627174|gb|EDV42698.1| GF18126 [Drosophila ananassae]
          Length = 909

 Score = 38.6 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 49/162 (30%), Gaps = 23/162 (14%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARS 102
            ++D +       +L   L +     + H +  +   L+   +L + I     T   A++
Sbjct: 333 YIFDTLILRDEMHILNLVLTDPKKLKILHGADLDIEWLQR--DLSLYIVNMFDTHRAAKA 390

Query: 103 NGLPS-ALKAVGEAL-KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
             L   +L  + +    L   K  +  +                R  P      +   +Y
Sbjct: 391 LNLARLSLAFLLKHYIDLDVDKSLQLADW-------------RMRPLP------QQLVDY 431

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVA 202
            + D      +++R+     ++Q    L   +      V   
Sbjct: 432 ARQDTHFLIYVYERMTNDLLEQQVETGLLNNVYMMSTEVCKK 473


>gi|239946745|ref|ZP_04698498.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921021|gb|EER21045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 281

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 44/172 (25%), Gaps = 36/172 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E             +Y     + +     +++   +    +      +  + L +
Sbjct: 23  LSIDTE----------FERRYTYYAQLSIIQVKAEEYCGIIDALSNLD--LNIFNKLLAD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEAL-KLSS 120
            ++T + H    +  +    F   I         + A   G    L    +   L  ++ 
Sbjct: 71  NNITKIFHAPREDLEIFYNLF--KILPSNVFDIQIAANICGFGKQLSYNDLCYKLIGITI 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            K  +    + R                           Y   DV    +I+
Sbjct: 129 DKTHQKSNWLKRPITS-------------------DMLNYAMLDVEYLYKIY 161


>gi|228932930|ref|ZP_04095795.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826733|gb|EEM72502.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 934

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            M +      ++              VAHN +F+   L                + T+ L
Sbjct: 64  SMVKQ-APLFQDVAPMVGELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHD 147


>gi|163788571|ref|ZP_02183016.1| DNA polymerase III, epsilon subunit [Flavobacteriales bacterium
           ALC-1]
 gi|159875808|gb|EDP69867.1| DNA polymerase III, epsilon subunit [Flavobacteriales bacterium
           ALC-1]
          Length = 398

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 24/134 (17%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
             + P   +V K  +E   D  IVAHNS F+  +LK             + +CT+ L++ 
Sbjct: 2   LRNAPKFYEVAKRIVEITEDCIIVAHNSSFDYRILKTEFKRLGFPFK-RKTLCTVELSKQ 60

Query: 103 NGL---PSALKAVGEALKLSSQ----------------KMEEGKELIARFCKGETHECLY 143
                   +L  +  AL +                   KM   K+L     K        
Sbjct: 61  LIPDMESYSLGKLTRALGIPVSDRHRANGDAVATVKLFKMLLNKDLDKAIIKDAVKVEQK 120

Query: 144 DRNKPNHREAWRLF 157
            +  PN RE     
Sbjct: 121 SKLAPNLREIIDEL 134


>gi|330810139|ref|YP_004354601.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378247|gb|AEA69597.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 253

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 12/79 (15%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR--------WICTLVLARSN 103
            +     E ++     ++ HN+ F+   +   F L     R         + TL++AR  
Sbjct: 74  EVADEFFEFIQ--GAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCTILDTLMMARER 131

Query: 104 GLPS--ALKAVGEALKLSS 120
                 +L A+ +   + +
Sbjct: 132 HPGQRNSLDALCKRYGVDN 150


>gi|315224304|ref|ZP_07866138.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
           ochracea F0287]
 gi|314945694|gb|EFS97709.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
           ochracea F0287]
          Length = 442

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 63/228 (27%), Gaps = 56/228 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV--ELWDCVHDPVMPQVLKEALE 62
           +D ET            KY E+  +   A + F+ H +  +    ++     Q     L 
Sbjct: 5   LDIETTG---------GKYNEEG-ITDIAIYQFNGHEITDQFISLINPERPIQEFVTKLT 54

Query: 63  -----------------------NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
                                   TD  IV HN+ F+  +L+        D  +   +CT
Sbjct: 55  GINNKMLRNAPKFYEVAKRIVEITTDCIIVGHNAAFDYRILQTEFRRLGYDF-VRTTLCT 113

Query: 97  LVLARSNGL---PSALKAVGEALKLS--SQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
           + L+          +L  +  +L +    +    G  L          E    ++     
Sbjct: 114 VELSERLIPNKESYSLGKLVRSLGIPVSDRHRASGDALATLKLFKYLLEKDTKKDIITTS 173

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                       D+ +      R   +     E   +    N+ G  +
Sbjct: 174 VK---------QDIRLEMA--SRHLKILDTLPETLGIFYMHNEEGKVI 210


>gi|124485750|ref|YP_001030366.1| hypothetical protein Mlab_0928 [Methanocorpusculum labreanum Z]
 gi|124363291|gb|ABN07099.1| Exonuclease, RNase T and DNA polymerase III [Methanocorpusculum
           labreanum Z]
          Length = 228

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 38/152 (25%), Gaps = 39/152 (25%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV--ELWDCVHDPVMPQVLKE-- 59
           L +D ET              A           + +  V  E     +D   P+ ++E  
Sbjct: 2   LIVDTETTGLNPKIDRITELAAIKFD------KYGNKSVMDEYISLPNDICYPENVQEMT 55

Query: 60  -----ALENTD-------------------VTIVAHNSYFERTV----LKACFNLDIPIH 91
                 LE                      V +V HN+ F+       L     +     
Sbjct: 56  GITPEILELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRHRYVFPNGW 115

Query: 92  RWICTLVLARSNGL-PSALKAVGEALKLSSQK 122
             I TL + R     P  L        L   K
Sbjct: 116 GVIDTLTVFRDRKPQPHRLSDAISYYGLDGVK 147


>gi|70730658|ref|YP_260399.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf-5]
 gi|68344957|gb|AAY92563.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens Pf-5]
          Length = 249

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 12/79 (15%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKA-------CFNLDI-PIHRWICTLVLARSN 103
            +     + ++     ++ HN+ F+   +             DI      + TL++AR  
Sbjct: 74  EVADEFFDFIQ--GAQLIIHNAAFDVGFINNEFALMGQHERADITQHCTILDTLMMARER 131

Query: 104 GLPS--ALKAVGEALKLSS 120
                 +L A+ +   + +
Sbjct: 132 HPGQRNSLDALCKRYGVDN 150


>gi|317502363|ref|ZP_07960529.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089964|ref|ZP_08338855.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896236|gb|EFV18341.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403102|gb|EGG82665.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 245

 Score = 38.6 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 37/143 (25%), Gaps = 27/143 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCV-----------ILFAFGFDDHPVE----L 44
            +  D ET     +    I   A    D  V            L +             +
Sbjct: 5   YIAFDLETTGLDPMNNEIIEIGALKVRDGKVSERFMEFIKPQELISPAITGLTGISNDMV 64

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFER---TVLKACFNLDIPIHRWICTLVLAR 101
                   +     +  E     ++ HN  F+        A   L         TL +A+
Sbjct: 65  ASARPARSVITDFIDFCEED--ILIGHNIIFDYSFTKCTAAREGLPFEKMGI-DTLKIAK 121

Query: 102 SNGL---PSALKAVGEALKLSSQ 121
                    +L A+ E  K+ ++
Sbjct: 122 KVHPELESKSLSALCEHYKIENK 144


>gi|332365809|gb|EGJ43566.1| DNA polymerase III PolC [Streptococcus sanguinis SK355]
          Length = 1462

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 17/124 (13%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK-ACFNLDIPIH--RWICTLVLARSNGLPS 107
             + +  +E  +++   +VAHN+ F+   +        +P      I TL  AR+     
Sbjct: 490 EQVLKEFQEFCKDS--VLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEY 547

Query: 108 ALKAVG----------EALKLSSQKMEEGKELIARFCKG--ETHECLYDRNKPNHREAWR 155
               +G          E   +++   E    L+  F K   E H     ++         
Sbjct: 548 KRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDEN 607

Query: 156 LFGE 159
            + +
Sbjct: 608 SYKK 611


>gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1228

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 23/138 (16%)

Query: 3   TLFIDFETR---SPID-LTKCGICKYAEDVCV-----------ILFAFGFDDHPVELWDC 47
            +  D ET    S  D + + G  +  E   +               +          D 
Sbjct: 202 YVVFDIETTGFNSVNDRIIEIGAVRVVE-GEIKETFSEFVNPERPIPYKITQLTTITDDM 260

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICTLVLARSN 103
           V D    + +            +VAHN+ F+   ++     L++P     + TL LAR  
Sbjct: 261 VKDAGTIEEILPQFLKFCEGSVLVAHNAGFDTGFIRENAKRLNLPYDHTVVDTLGLARCL 320

Query: 104 GLPSA---LKAVGEALKL 118
                   L  + + L +
Sbjct: 321 MGHLGKFTLDNICKHLNI 338


>gi|330793394|ref|XP_003284769.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum]
 gi|325085263|gb|EGC38673.1| hypothetical protein DICPUDRAFT_75736 [Dictyostelium purpureum]
          Length = 501

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 32/153 (20%)

Query: 2   ATLFIDFETRS---PIDLTKCGICKYAEDVCV-ILFAFGFDDHPVELWDCVHD------- 50
             +  D ET        + + G  +  +     ++F   +     ++     +       
Sbjct: 288 RVICFDLETSGFSAEDSIIEIGAVELIDGCRTGVIFQ-SYAKPKAQIHPRAEEIHQLNNY 346

Query: 51  --------PVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRW-ICTLV 98
                    VM     + + ++   ++AHN  F++ +L      + +         CT+ 
Sbjct: 347 LLQYSPPIEVMLCSFMDWVGDS--PLIAHNLSFDKRMLLQELVRYKIPFDNDHICFCTMK 404

Query: 99  LAR----SNGLPSALKAVGEALKLSSQKMEEGK 127
                    GL  +L +V + LK++   + +  
Sbjct: 405 --YFRKVYMGLNYSLDSVSQKLKINKLLLRKTH 435


>gi|282859320|ref|ZP_06268432.1| DNA polymerase III, alpha subunit [Prevotella bivia JCVIHMP010]
 gi|282587900|gb|EFB93093.1| DNA polymerase III, alpha subunit [Prevotella bivia JCVIHMP010]
          Length = 1241

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 27/92 (29%), Gaps = 7/92 (7%)

Query: 74  YFERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKEL 129
            ++   ++      + + +   +    ++L+R     +  ++      +  +K      +
Sbjct: 736 QYDIPCMEKYLKDTYGITVYQEQV---MLLSRQLANFTRGESDALRKAMGKKKKNIVDAM 792

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F K         +        W  F  Y 
Sbjct: 793 KPKFIKQGQENGHDPKVLEKIWSDWEKFASYA 824


>gi|149442096|ref|XP_001518791.1| PREDICTED: similar to rabaptin, RAB GTPase binding effector protein
           1, partial [Ornithorhynchus anatinus]
          Length = 722

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/109 (8%), Positives = 30/109 (27%), Gaps = 10/109 (9%)

Query: 191 TINDRGYCVDVALA-------HTLNQIVDVERTKLDQELESLTYGLVSSSR--CLEKLKT 241
               +    D                 +  + T+ + +++ L    V         +   
Sbjct: 340 ENEMKKAQEDAEKLRSVVMPMEKEIAALKEKLTEAEDKIKELEASKVKELNHYLEAEKSC 399

Query: 242 WLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF-NNRMRASRSAVL 289
              LE  + + +  ++  Q      +K   +  ++    R + ++    
Sbjct: 400 RTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCRLLEQERQQHNQLKHT 448


>gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8]
 gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8]
 gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima]
          Length = 1367

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIPIHRWICTLVLARSNGL- 105
             +       LE++   IVAHN+ F+   L    K    LD     +I TL LA+S    
Sbjct: 424 EEVLPEFLGFLEDS--IIVAHNANFDYRFLRLWIKKVMGLDWE-RPYIDTLALAKSLLKL 480

Query: 106 -PSALKAVGEALKLS----SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
              +L +V E L L      + +++ +     F +           K +  E  +   +Y
Sbjct: 481 RSYSLDSVVEKLGLGPFRHHRALDDARVTAQVFLRFVEMMKKIGITKLSEMEKLKDTIDY 540


>gi|307169992|gb|EFN62471.1| Bullous pemphigoid antigen 1, isoforms 6/9/10 [Camponotus floridanus]
          Length = 8605

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 32/121 (26%), Gaps = 9/121 (7%)

Query: 165  VTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELES 224
               TR +    +           L   +++    +D   A  L      +      +   
Sbjct: 7508 AERTRALDHGYKEAREFHDSWSNLMYWLDETEKTLDEVAADGLGGNDPDKIKSRLNKHRE 7567

Query: 225  LTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQ----RVLSSNKKLTPQAIQVFNNR 280
            +       +   ++      ++ G  L+D    T +     +L+  K           +R
Sbjct: 7568 I-----QKALSAKQSTYDTTMKNGKTLKDKAPKTDEPALRELLNELKNKWTTVCGKCVDR 7622

Query: 281  M 281
             
Sbjct: 7623 Q 7623


>gi|297621916|ref|YP_003710053.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044]
 gi|297377217|gb|ADI39047.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044]
          Length = 249

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 57/219 (26%), Gaps = 65/219 (29%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH-PVELWDCVHDPVMPQ------- 55
           + +D ET          I        V   AF  ++           +  +P+       
Sbjct: 10  VCLDCETTGLDPKEDRVI-------EVACVAFTLEEKLDAFETLIDPERDIPETSIAIHH 62

Query: 56  ----------VLKEALENTDV-------TIVAHNSYFERTVLKA---CFNL--DIPIHRW 93
                      +KE L    V        IV H   F+   +        +  ++  + +
Sbjct: 63  ITQKMVAGKPKVKEVL--PKVLDFVGSHIIVGHGIQFDIEAISHSCDRAGISKNLRDNPF 120

Query: 94  ICTLVLARSNGLP--SALKAVGEALKLSSQ---------------------KMEEGKELI 130
           I TL +AR  G    ++L+ + +   + S+                          K+L 
Sbjct: 121 IDTLRMARLYGESPINSLEHLRKHFNIESEIAHRAMSDVMVNIEVFKQLLKGYSSLKQLN 180

Query: 131 ARFCKG---ETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
               K    +       + +P      +        D  
Sbjct: 181 KILAKPIMLKEMPLGKHKGRPFKEIPVQYLRWAAHQDFD 219


>gi|148239379|ref|YP_001224766.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803]
 gi|147847918|emb|CAK23469.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803]
          Length = 272

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 24/140 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCV----ILFAFG----FDDHPVELWDCVHDP-- 51
             L +D ET          +   A    +    +L         D +P E  + +     
Sbjct: 43  RLLIVDTETTGLDADRDQCLELGAILFSIPHRQVLAQMSCLLPVDHNPAEAINRIPAEVS 102

Query: 52  -------VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV-----L 99
                        +  + + D   VAHN+ F+R       +L      W+CTL       
Sbjct: 103 RLDQPWGDGLAWFERMMASADYL-VAHNAAFDRQWFGR-GSLPEATRPWLCTLEDVRWPE 160

Query: 100 ARSNGLPSALKAVGEALKLS 119
           AR+     ++  +  A  + 
Sbjct: 161 ARNLRARPSVIDLALAYGIP 180


>gi|57168016|ref|ZP_00367155.1| polysaccharide biosynthesis protein [Campylobacter coli RM2228]
 gi|57020390|gb|EAL57059.1| polysaccharide biosynthesis protein [Campylobacter coli RM2228]
          Length = 275

 Score = 38.6 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 49/174 (28%), Gaps = 42/174 (24%)

Query: 29  CVILFAFGFDDH-----PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-K 81
            ++       DH      V   D  ++  M       +E  +  +V+ N   ++  +L  
Sbjct: 70  KIVSICAVISDHYGKFIKVNKIDGENEKEMIHNFFAFIEKYEPKLVSFNGKNYDMPLLVL 129

Query: 82  ACFNLDIPIHRWICT-------------------LVLARSNGLPSALKAVGEALKLSSQK 122
                +I    ++ T                   L  +  +     L  +     L  + 
Sbjct: 130 RALKYNIKAANYLDTQSDKWNNYKTRFSELKHCDLFESFGSTRGLKLDTICAMADLPGKY 189

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              G E++                   + +      EYC+ DV  T  +F + E
Sbjct: 190 DVHGDEVMKL----------------YYEDKIEKIHEYCESDVLNTYMLFLKYE 227


>gi|329964271|ref|ZP_08301372.1| exonuclease [Bacteroides fluxus YIT 12057]
 gi|328525576|gb|EGF52619.1| exonuclease [Bacteroides fluxus YIT 12057]
          Length = 168

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 21/135 (15%)

Query: 5   FIDFETRSPIDLTKCGICK-YAEDVCVILFAFG-FDDHPVELW------------DCVHD 50
            IDFET +    + C +     ++  +    +      P                D    
Sbjct: 6   AIDFETANEQRCSVCSVGVVIVKEGEITDSYYSLIRPEPEYYTYWTTRVHGLTLADTAGA 65

Query: 51  PVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG-- 104
           PV P V +E       + +VAHN  F+ + LK     +++D P + + CTL  +R     
Sbjct: 66  PVFPDVWREIAPRIEGLPLVAHNKAFDESCLKAVFRTYSMDYPDYDFYCTLQASRRVIKG 125

Query: 105 -LPSALKAVGEALKL 118
                L  V      
Sbjct: 126 LPDYQLHTVAACCGY 140


>gi|325288177|ref|YP_004263967.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
 gi|324323631|gb|ADY31096.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
          Length = 454

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL--- 105
            + + + E  E+    +VAHN+ F+  +L+        +    + +CT+ L++       
Sbjct: 69  EIAKRIVEITEDA--VLVAHNAQFDYRILRTEFRRLGYNFE-RKTLCTVNLSKELIPDKE 125

Query: 106 PSALKAVGEALKLS 119
             +L  +  +L + 
Sbjct: 126 SYSLGKLVRSLGIP 139


>gi|167623805|ref|YP_001674099.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis
           HAW-EB4]
 gi|167353827|gb|ABZ76440.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 242

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNL-------DIPIHRWIC 95
            + D      + Q   E ++  ++  VAHN+ F+ + +   F++          I + + 
Sbjct: 75  FVADKPKFHEIAQSFIEFIDGAEI--VAHNANFDVSFMDHEFSMLQPRGPKTADICQILD 132

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSS 120
           +L +A+         L A+ +   + +
Sbjct: 133 SLAIAKHLHPGQKNNLDALCKRYGIDN 159


>gi|94676582|ref|YP_588911.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|94219732|gb|ABF13891.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 240

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 47/174 (27%), Gaps = 43/174 (24%)

Query: 1   MA-TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVM 53
           M   + +D ET     + K G+  Y     +I      +                 +  +
Sbjct: 1   MKRQIVLDIETTG---INKLGVHYYGH--RIIEIG-AVEIINRRITGKNFHVYLNPERFI 54

Query: 54  PQVLKEA----------------LENTDVTIV------AHNSYFERTV------LKACFN 85
            Q   +                 + +  +T +       H++ F+         L     
Sbjct: 55  DQEAFKIHGISNNFLKDKPTFAQVADKLITFISQSELVIHHAPFDIGFIDYEFKLLNRSM 114

Query: 86  LDIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGE 137
           +     +   TL+LAR        +L A+     + +    +   L+      E
Sbjct: 115 ISKTFVQVTDTLLLARKIFPGKRNSLDALCNRYHIKNIHRTKHGALLDAKILAE 168


>gi|329116348|ref|ZP_08245065.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           parauberis NCFD 2020]
 gi|326906753|gb|EGE53667.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
           parauberis NCFD 2020]
          Length = 834

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 56/212 (26%), Gaps = 13/212 (6%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP---SALKAVGEALK 117
            D   VAHN  F+  +L         ++   R   T+ LA+          L  +   L 
Sbjct: 99  KDCIFVAHNVKFDANLLAEALFFEGFELRTPRV-DTVELAQVFFPHLEKYNLTYLSTELN 157

Query: 118 LS-SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
           L  S       + +A        +                + +    +  +  E   +  
Sbjct: 158 LELSDAHTAIADAMATANLLLVLQDKIKSLPKESLAYILRYSDSLIFESDLLIEEGLKHA 217

Query: 177 PLSSKEQELWYLDQTINDRGYCVDVALAHTL----NQIVDVERTKLDQELESLTYGLVSS 232
                 +     D  I      +D             ++ +E   L  +  SL     + 
Sbjct: 218 KPLDAMEFQLIDDLVIRKDQPSLDALKLSQSFEINTALLGLENRPLQNQFASLVEDAFNQ 277

Query: 233 S-RCLEKLKTWLFLETGLHLEDLTETTCQRVL 263
                 + +  +    G  L  L +    +VL
Sbjct: 278 PQASFIQAQAGIGKTYGYLLPLLAKADGNQVL 309


>gi|305431832|ref|ZP_07400999.1| polysaccharide biosynthesis protein [Campylobacter coli JV20]
 gi|304444916|gb|EFM37562.1| polysaccharide biosynthesis protein [Campylobacter coli JV20]
          Length = 275

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 49/174 (28%), Gaps = 42/174 (24%)

Query: 29  CVILFAFGFDDH-----PVELWDCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVL-K 81
            ++       DH      V   D  ++  M       +E  +  +V+ N   ++  +L  
Sbjct: 70  KIVSICAVISDHYGKFIKVNKIDGENEKEMIHNFFAFIEKYEPKLVSFNGKNYDMPLLVL 129

Query: 82  ACFNLDIPIHRWICT-------------------LVLARSNGLPSALKAVGEALKLSSQK 122
                +I    ++ T                   L  +  +     L  +     L  + 
Sbjct: 130 RALKYNIKAANYLDTQSDKWNNYKTRFSELKHCDLFESFGSTRGLKLDTICAMADLPGKY 189

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
              G E++                   + +      EYC+ DV  T  +F + E
Sbjct: 190 DVHGDEVMKL----------------YYEDKIEKIHEYCESDVLNTYMLFLKYE 227


>gi|229157184|ref|ZP_04285264.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
 gi|228626248|gb|EEK82995.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 4342]
          Length = 315

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 22/159 (13%)

Query: 2   ATLFIDFETRSPID----LTKCGICKYAEDVCVILF-AF-----GFDDHPVELWDCVH-- 49
             + IDFET         + +    KY     V  F ++        D    L    +  
Sbjct: 9   DYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERSIPDRITSLTGITNYR 68

Query: 50  --DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLA-- 100
             D    + +            IVAHN+ F+   LK      +L  P ++ I T+ LA  
Sbjct: 69  VSDARTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLSLPEPKNKVIDTVFLAKK 128

Query: 101 RS-NGLPSALKAVGEALKLSSQKMEEGKELIARFCKGET 138
              +     L+ +   L +         + I      + 
Sbjct: 129 YMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQK 167


>gi|42523607|ref|NP_968987.1| DNA polymerase III subunit epsilon [Bdellovibrio bacteriovorus
           HD100]
 gi|39575813|emb|CAE79980.1| DNA polymerase III polC-type [Bdellovibrio bacteriovorus HD100]
          Length = 295

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 21/98 (21%)

Query: 6   IDFETRSPIDLTKCGICKYAEDV-------CVILF--AFGFDDHPVELWD---------- 46
           +D ET          I               V+    ++     P +             
Sbjct: 49  LDVETTGLNQTEDTIIEIGIRQFLFNKNSGEVLAVTKSYSSFQDPGKPISPEIQALTGIT 108

Query: 47  --CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA 82
              V    +     +AL N    I+AHN+ F+R  +  
Sbjct: 109 DEMVAGKQIDWTAVDALLNECQLIIAHNAKFDRPFIDR 146


>gi|325914723|ref|ZP_08177061.1| ribonuclease D [Xanthomonas vesicatoria ATCC 35937]
 gi|325539000|gb|EGD10658.1| ribonuclease D [Xanthomonas vesicatoria ATCC 35937]
          Length = 364

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 52/204 (25%), Gaps = 40/204 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L      +  + +   +    M + LK
Sbjct: 23  IGLDTEFIRERTYW---------------PQLALVQMAIGEEILLIDPLIPG--MNEALK 65

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L  TD+  V H++  +    K      +       T +                A   
Sbjct: 66  EWLTATDIVKVMHSASEDLVTFKCACG--VLPRPLFDTQI---------------AAALA 108

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                   ++L+     G        R+    R       EY   DV     I   L   
Sbjct: 109 GVGGGMGYQKLVQEVT-GTLLTKGETRSDWMRRPLSASQLEYAADDVRYLFAIHDELSRR 167

Query: 179 SSKEQELWYLDQTINDRGYCVDVA 202
            ++   L +L +        V+  
Sbjct: 168 LTELDRLGWLAEDAERLLATVEHD 191


>gi|262182582|ref|ZP_06042003.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 223

 Score = 38.6 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 46/192 (23%), Gaps = 38/192 (19%)

Query: 2   ATLFIDFETRSPID-----------------------LTKCGICKYAEDVCVILFAFGFD 38
             L  D ET S                          L   G+    E   +        
Sbjct: 7   RMLSFDLETTSVKPKEARIVTSALVRIDGREVDKREMLADPGVEIPEEAAKIHGIT---- 62

Query: 39  DHPVELWDCVHDPVMPQVLKEALE--NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICT 96
                     H+ V+ + +    +  +  +T++ +N+ ++ +VL+A              
Sbjct: 63  TEKARAEGRPHEEVLKETVDSIYQAWDEGLTLIVYNAAYDLSVLRALTGDFTVNGPVFDP 122

Query: 97  LVLARSNGL----PSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRN--KPNH 150
            V+ R           L+ V     +    +    E  A             R       
Sbjct: 123 FVIDRVKDKWRKGKRTLEEVSAHYGVE---LSNAHEATADALAAARVAWKQVRQHFPELA 179

Query: 151 REAWRLFGEYCK 162
           +       EY  
Sbjct: 180 QMDSNELMEYQA 191


>gi|28899066|ref|NP_798671.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837020|ref|ZP_01989687.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|260361704|ref|ZP_05774731.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
 gi|260876852|ref|ZP_05889207.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260897333|ref|ZP_05905829.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260899809|ref|ZP_05908204.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|28807290|dbj|BAC60555.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749793|gb|EDM60538.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|308088283|gb|EFO37978.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091367|gb|EFO41062.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308107229|gb|EFO44769.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308113581|gb|EFO51121.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
          Length = 240

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 11/98 (11%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWIC 95
            L D      + Q   + +      +VAHN+ F+   +   F              +   
Sbjct: 77  FLVDKPEYASIHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLDPTIGKTDDYCKVTD 134

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           TL +A+         L  + E   + +        L+ 
Sbjct: 135 TLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLD 172


>gi|32035046|ref|ZP_00135112.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
           exonucleases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208748|ref|YP_001053973.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           L20]
 gi|126097540|gb|ABN74368.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 257

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/200 (11%), Positives = 49/200 (24%), Gaps = 43/200 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMPQ 55
             + +D ET     ++  G  +   +  +I      +                    + +
Sbjct: 8   RQVVLDTETTG---MSFSGPPQIGHN--IIEIG-AVEVINRRLTGRTFHVYIKPPREVDE 61

Query: 56  VLK-------EALENTDV---------------TIVAHNSYFERTVLKA---CFNLDIP- 89
                     E L++  V                ++ HN+ F+   +           P 
Sbjct: 62  EAIKVHGITNEFLQDKPVFAEVADEFIEFIKGAELIIHNAPFDVAFMDQEFSYLGNPPPK 121

Query: 90  ---IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
              +     +L +AR         L A+ + L + + K      L+      +    +  
Sbjct: 122 TAEMCSVTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTG 181

Query: 145 RNKPNHREAWRLFGEYCKGD 164
                  E           D
Sbjct: 182 GQLALLGEEDATATHENVAD 201


>gi|312883833|ref|ZP_07743552.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368582|gb|EFP96115.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 244

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 42/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMPQ 55
             + +D ET     +   G   Y     +I      +                 D  +  
Sbjct: 11  RIIVLDTETTG---MNLEGGPHYQGH-RIIEIG-AVEIINRKLTGRHFHVYIKPDRDIQA 65

Query: 56  VLK-------EALENTDVTI---------------VAHNSYFERTVLKACF-------NL 86
                     E L +                    VAHN+ F+   +   F         
Sbjct: 66  EAVGVHGITDEFLRDKPEYKDVHAEFLAFINGAELVAHNASFDVGFMDYEFSMLDASIGK 125

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                +   TL +A+         L  + +   + +        L+ 
Sbjct: 126 TAQYCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLD 172


>gi|229016898|ref|ZP_04173826.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1273]
 gi|229023104|ref|ZP_04179618.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1272]
 gi|228738250|gb|EEL88732.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1272]
 gi|228744459|gb|EEL94533.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           AH1273]
          Length = 934

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                + T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEVHCPKVDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|259909387|ref|YP_002649743.1| DNA polymerase III subunit epsilon [Erwinia pyrifoliae Ep1/96]
 gi|224965009|emb|CAX56539.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae Ep1/96]
 gi|283479460|emb|CAY75376.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae DSM 12163]
          Length = 252

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 43/167 (25%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 8   RQIVLDTETTGMNMI-----GVHYEGHRIIEIG-AVEVINRRLTGNNFHVYLKPDRLIDP 61

Query: 41  PVELWDCVHDPVMPQV--LKEALEN-----TDVTIVAHNSYFERTV-------LKACFNL 86
                  + D  +       +  ++         +V HN+ F+          L+     
Sbjct: 62  EAFGVHGIADEFLLDKPTFAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAK 121

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                +   +L +AR        +L A+    ++ + K      L+ 
Sbjct: 122 TETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLD 168


>gi|169350436|ref|ZP_02867374.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
 gi|169292756|gb|EDS74889.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
          Length = 1439

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 22/141 (15%)

Query: 3   TLFIDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDHPVEL--WD---------C 47
            +  D ET         +T+ G  K      +       +                    
Sbjct: 402 YVAFDLETTGLSVIHDGITEFGAVKIKNGEVIDRMQKFINPGKTISSRISSLTNITNEMV 461

Query: 48  VHDPVMPQVLKEALEN-TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN 103
            ++P + +VL E +E   D  +VAHN+ F+   L       N+    +  I +L LAR+ 
Sbjct: 462 KNEPTIDKVLPEIMEFFGDCILVAHNASFDVGFLNENLRRSNMSEIKNPIIDSLALARAI 521

Query: 104 GLP---SALKAVGEALKLSSQ 121
             P     L  V  + +++  
Sbjct: 522 LKPMKSYRLGNVCRSYRVNYD 542


>gi|289550389|ref|YP_003471293.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01]
 gi|315660145|ref|ZP_07913002.1| exonuclease [Staphylococcus lugdunensis M23590]
 gi|289179921|gb|ADC87166.1| DNA polymerase III polC-type [Staphylococcus lugdunensis HKU09-01]
 gi|315494826|gb|EFU83164.1| exonuclease [Staphylococcus lugdunensis M23590]
          Length = 186

 Score = 38.6 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 27/139 (19%)

Query: 4   LFIDFETR-------SPIDLTKCGICKYAEDVCVIL-----FA------FGFDDHPVELW 45
           + +DFET          + + K    +  E    ++     F+       G +   V   
Sbjct: 9   VALDFETANGKRTSICSVGMVKVIDNQITESFHTLINPQDYFSKKNINVHGINPEDV--I 66

Query: 46  DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT-LVLAR 101
                  +   + + + N  + +VAHN+ F+  VL        +  P   + C+  +  R
Sbjct: 67  HAPQFDYVFPYMLQFIAN--LPVVAHNAAFDMNVLHQSLKQAGIITPDLTYFCSYQLAKR 124

Query: 102 SNGLP-SALKAVGEALKLS 119
           +   P   LK + +   L 
Sbjct: 125 TIDAPRYGLKHMMDFYNLD 143


>gi|221128253|ref|XP_002154376.1| PREDICTED: similar to DNA polymerase gamma, partial [Hydra
           magnipapillata]
          Length = 543

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 22/238 (9%)

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN--------GLPSALKAVGE 114
           N    I+ HN  F+R+ ++  ++L+    R++ TL L                + K+  +
Sbjct: 235 NKKRLIIGHNVCFDRSFVREQYSLEASNLRFLDTLSLHVCVSGITNEQRNYMKS-KSDAK 293

Query: 115 AL--KLSSQKMEEGKELIARFCKGETHECLYD----RNKPNHREAWRLFGEYCKGDVTVT 168
                +    M    ++   +C     +   D     +  +  E ++    YC  DV  T
Sbjct: 294 VHFDWMDVGAMNSLVKVYEFYCNKSIDKSSRDYFVTGSLQDIYENFQECVRYCAVDVQST 353

Query: 169 REIFKRLEPLS-SKEQELWYLDQTINDRGY--CVDVA---LAHTLNQIVDVERTKLDQEL 222
             +F  + P+          L   +        +D +          I +    ++   L
Sbjct: 354 HAVFTSVWPMFCFHAPHPVTLLGMLEMGTSYLPIDESWNHYLEQAEFIYNKMAKQMRHSL 413

Query: 223 ESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVL-SSNKKLTPQAIQVFNN 279
            ++    +      +             +     +    VL      +        N+
Sbjct: 414 MAVADEALKMIIDDKYKSDPWLWSMDWSIHKTAISKDNAVLIDKEDDVHAYIKNRLNH 471


>gi|126695985|ref|YP_001090871.1| putative DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543028|gb|ABO17270.1| possible DNA polymerase III, epsilon subunit [Prochlorococcus
           marinus str. MIT 9301]
          Length = 259

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 17/112 (15%)

Query: 2   ATLFIDFETRSPIDLT----KCGICKYAEDVCVILFAFGF----DDHPVELWDCVHDP-- 51
             L +D ET    +      + G   +      +L    F    +++  E  + +     
Sbjct: 37  KILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPVNNNKAEYVNGISAEVT 96

Query: 52  VMPQVLKE------ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTL 97
            + Q  ++       L ++   IVAHN  F++          +   +WIC+L
Sbjct: 97  NISQPWEDGLNFFLKLVDSSDFIVAHNVEFDKKWFGKGRLPKLN-KKWICSL 147


>gi|37681316|ref|NP_935925.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
 gi|37200067|dbj|BAC95896.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
          Length = 213

 Score = 38.6 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 43/161 (26%), Gaps = 55/161 (34%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVEL------ 44
            + +D ET S       L      K  ++         V L A    D   V++      
Sbjct: 32  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHKIRHQ 91

Query: 45  --WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIP--------- 89
              D + +      L + +   +  +V ++  +++ +L           +          
Sbjct: 92  DLVDGLSEKEALLKLIDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLANPLVEVSQI 149

Query: 90  ---------IHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
                     + +              +L A+   L L  Q
Sbjct: 150 YHDKLEKHLPNAYFD-----------LSLDAICRHLDLPIQ 179


>gi|330445182|ref|ZP_08308834.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489373|dbj|GAA03331.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 241

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 11/89 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIP----IHRWICTLVLARSNG 104
            + Q   + +      +VAHN+ F+   +         D+     I +   TL +A+   
Sbjct: 81  EIHQEFIDFI--DGAELVAHNASFDIGFMDYEFQLMGSDLKKTEDICKVTDTLEMAKRLF 138

Query: 105 LPS--ALKAVGEALKLSSQKMEEGKELIA 131
                 L  +     + +        L+ 
Sbjct: 139 PGKRNNLDILCSRYGIDNSHRTLHGALLD 167


>gi|269960617|ref|ZP_06174989.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3]
 gi|269834694|gb|EEZ88781.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3]
          Length = 238

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 11/98 (11%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWIC 95
            L D      + Q   + +      +VAHN+ F+   +   F              +   
Sbjct: 77  FLVDKPEYSAVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLNPSIGKTDDYCKVTD 134

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           TL +A+         L  + E   + +        L+ 
Sbjct: 135 TLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLD 172


>gi|262278391|ref|ZP_06056176.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258742|gb|EEY77475.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 228

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE--DVCV-------------ILFAFGFDDHPVELW 45
           M  + +D ET +   L         E  +  +             +     +    V   
Sbjct: 1   MQAIILDTETHTLNGLPIEIAYAPIELNEGKLTLDKSKLFDQLYQVGAPISYAAMAVHHI 60

Query: 46  DCVHDPVMP--QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLAR 101
                   P  +  K  L  +   I+ HN  ++   +  C  +D+   + ICTL LAR
Sbjct: 61  LETDLENQPHYKTFK--LPESTTYIIGHNIDYDIAAIARC-GVDVSNIKPICTLALAR 115


>gi|46124885|ref|XP_386996.1| hypothetical protein FG06820.1 [Gibberella zeae PH-1]
          Length = 547

 Score = 38.6 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 48/187 (25%), Gaps = 34/187 (18%)

Query: 2   ATLFIDFE-------TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMP 54
             +  D E       T          + + A    V LF        V L+    D  + 
Sbjct: 186 KVIGFDLEWLIRHRNT---DPRVNVSLIQIASPSRVALF-------HVALYP--KDDFVA 233

Query: 55  QVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV-- 112
              K+ +E+  VT V      + T LK    ++                 L    K V  
Sbjct: 234 PTFKKIMEDESVTKVGVCIKGDCTRLKNNLGIESRG-----------VLELSHLFKLVKY 282

Query: 113 --GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
                LK  ++ M                +    R+             Y   D  V  +
Sbjct: 283 SKSGELKRINKIMVNLAAQTQEVLGLPLFKGNDVRSSNWMLPLSEQQISYSASDAYVGLQ 342

Query: 171 IFKRLEP 177
           ++  LE 
Sbjct: 343 LYHVLEQ 349


>gi|332882730|ref|ZP_08450341.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679232|gb|EGJ52218.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 442

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 54/185 (29%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV--ELWDCVHDPVMPQVLKEALE 62
           +D ET            KY E+  +   A + FD H +  +    ++     Q     L 
Sbjct: 5   LDIETTG---------GKYDEEG-ITEIAIYRFDGHELTDQFISLINPERPIQDFVTKLT 54

Query: 63  -----------------------NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
                                    D  IV HN+ F+  +L+        D  I   +CT
Sbjct: 55  GINNKMLRNAPKFYEVAKRIVEITQDTIIVGHNAAFDYRILQTEFRRLGYDY-IRTTLCT 113

Query: 97  LVLARSNGL---PSALKAVGEALKLSS-----------QKMEEGKELIARFCKGETHECL 142
           + L++         +L  +  +L +               +   K L+ +  K       
Sbjct: 114 VELSQQLLPEKESYSLGKLVRSLGIPMSERHRASGDALATLNLFKYLLEKDTKKTIITAS 173

Query: 143 YDRNK 147
              + 
Sbjct: 174 VKNDV 178


>gi|329957519|ref|ZP_08297994.1| DNA polymerase III, alpha subunit [Bacteroides clarus YIT 12056]
 gi|328522396|gb|EGF49505.1| DNA polymerase III, alpha subunit [Bacteroides clarus YIT 12056]
          Length = 1265

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 7/92 (7%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  +++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPIMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F  G        +        W  F  Y 
Sbjct: 823 KPKFIAGGQKNGHDAKVLEKIWTDWEKFASYA 854


>gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
           12755]
 gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
           12755]
          Length = 918

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 44/155 (28%)

Query: 1   MATLF--IDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV---ELWDCVHDPVMP 54
           M  ++  +D ET                   +I F      D  +      D   D  + 
Sbjct: 1   MKPIYAVVDLETTGTDSTID----------RIIQFGCVLVQDGKIINRFAADINPDRRIS 50

Query: 55  QVLK-------------EALEN---------TDVTIVAHNSYFERTVLKACFNL-DIPIH 91
           + ++                E+         ++   VAHN YF+   L   F    +P  
Sbjct: 51  KQIQRLTHITNQQVSKAPYFEDVADTIYNLLSNTIFVAHNIYFDYHFLSNEFVRCGLPPL 110

Query: 92  RW--ICTLVLARSNGLPSA---LKAVGEALKLSSQ 121
               I T+ LA+      +   L  + +++     
Sbjct: 111 SLPGIDTVELAQVFLPTESSFRLGDLADSIGFRHD 145


>gi|292487330|ref|YP_003530202.1| DNA polymerase III subunit epsilon [Erwinia amylovora CFBP1430]
 gi|292898576|ref|YP_003537945.1| DNA polymerase III subunit epsilon [Erwinia amylovora ATCC 49946]
 gi|291198424|emb|CBJ45532.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC 49946]
 gi|291552749|emb|CBA19794.1| DNA polymerase III epsilon subunit [Erwinia amylovora CFBP1430]
 gi|312171436|emb|CBX79694.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC
           BAA-2158]
          Length = 249

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 43/167 (25%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 8   RQIVLDTETTGMNMI-----GVHYEGHRIIEIG-AVEVINRRLTGNNFHVYLKPDRLIDP 61

Query: 41  PVELWDCVHDPVMPQV--LKEALEN-----TDVTIVAHNSYFERTV-------LKACFNL 86
                  + D  +       +  ++         +V HN+ F+          L+     
Sbjct: 62  EAFGVHGIADEFLLDKPTFAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAK 121

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                +   +L +AR        +L A+    ++ + K      L+ 
Sbjct: 122 TETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLD 168


>gi|159897533|ref|YP_001543780.1| DNA polymerase III subunit epsilon [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890572|gb|ABX03652.1| DNA polymerase III, epsilon subunit [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 282

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 29  CVILFAFGFDDHPVELWDCVH--DPVMPQVLKEALENTDVTIVAHNSYFERTVL-KACFN 85
            +   AF  +    E+         + P+     L +  V  VAHN+YF+   L      
Sbjct: 70  EIDPAAFAVNGISAEMVANAPSFGEIWPK--VNKLFHEAVL-VAHNAYFDIGFLTSELSR 126

Query: 86  LDIPI--HRWICTLVLA--RSNGLPSALKAVGEALK 117
           +D+P      I TL LA          L ++   L 
Sbjct: 127 IDLPPLETPVIDTLALARRYITARRYNLTSLATNLG 162


>gi|58582365|ref|YP_201381.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426959|gb|AAW75996.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 416

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 51/204 (25%), Gaps = 40/204 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L      +  + +   +    M   LK
Sbjct: 76  IGLDTEFIRERTYW---------------PQLALVQMAIGEEILLIDPLIPG--MNAALK 118

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L  TD+  V H++  +    K      +       T +                A   
Sbjct: 119 EWLTATDIVKVMHSASEDLVTFKCACG--VLPRPLFDTQI---------------AAALA 161

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                   ++L+         +     +      +     EY   DV     I   L   
Sbjct: 162 GVGGGMGYQKLVQEVTGTLLTKGETRSDWMRRPLSPSQL-EYAADDVRYLFAIHDELTRR 220

Query: 179 SSKEQELWYLDQTINDRGYCVDVA 202
            +++  L +L +        V+  
Sbjct: 221 LTEQNRLGWLAEDAERLLATVEHD 244


>gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125]
 gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125]
          Length = 1433

 Score = 38.2 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP- 106
             +       + +    +VAHN+ F+   L        L    +  I TL L R      
Sbjct: 485 EQVLNEFHAFIGDA--VLVAHNASFDMGFLNTGFQKMGLGEAKNPVIDTLELGRFLYPTL 542

Query: 107 --SALKAVGEALKLS 119
               L  + +   + 
Sbjct: 543 KNHRLNTLCKKFDIE 557


>gi|313884171|ref|ZP_07817937.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620618|gb|EFR32041.1| exonuclease, DNA polymerase III, epsilon subunit family
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 849

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 64  TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
            D   VAHN  F+   LK     F LD        T+ LA+          L  + + + 
Sbjct: 83  KDCIFVAHNINFDLRFLKQCFHHFGLDFNPPAL-DTVKLAKIFMPQAIGFNLTDLSQEMN 141

Query: 118 LSSQ 121
           L   
Sbjct: 142 LFFD 145


>gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
 gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
          Length = 469

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 29/138 (21%)

Query: 6   IDFETRSPID----LTKCGICKYAEDVCVIL---------------FAFGFDDHPVELWD 46
           +D ET         +T+  + +  E   V+                           +  
Sbjct: 8   LDLETTGSNPVLDRITEVAVMR-VEQGEVVAKWSRLLNPGQRIPPFIQQLTGIDDAMVAG 66

Query: 47  CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN 103
                 +   L   L +  V  VAHN  F+   LK       +D+ +    CT+ L+R  
Sbjct: 67  APAFGEVLPELLAVL-DGAVL-VAHNVRFDHGFLKQAAAREGVDLRVKTL-CTVRLSRKL 123

Query: 104 GL---PSALKAVGEALKL 118
                   L A+     L
Sbjct: 124 YPQARGHGLDAIMRRHGL 141


>gi|77458414|ref|YP_347919.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf0-1]
 gi|77382417|gb|ABA73930.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens Pf0-1]
          Length = 252

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 12/79 (15%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHR--------WICTLVLARSN 103
            +     E + N    I+ HN+ F+   +   F L     R         + TL++AR  
Sbjct: 74  EVADEFFEFI-NGAQLII-HNAAFDVGFINNEFALMGQHDRADITQHCTILDTLMMARER 131

Query: 104 GLPS--ALKAVGEALKLSS 120
                 +L A+ +   + +
Sbjct: 132 HPGQRNSLDALCKRYGVDN 150


>gi|150016887|ref|YP_001309141.1| exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903352|gb|ABR34185.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
           beijerinckii NCIMB 8052]
          Length = 976

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 26/147 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVC------------------VILFAFGFDDHPVE 43
             +++D ET    +     I   A  V                   + +++   D    +
Sbjct: 11  NVIYLDIETTGLDETCSEIIEIGAVKVKNGVITTYNTLIRPRGRVPISIYSLCSDLKEAD 70

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
           L        + Q + E LE+  + ++ HN  FER  L     +    +  + ++ LA   
Sbjct: 71  LLSARSLNSIKQEVLEFLED--LPLICHNGNFERKFLSFY--IPEIKNTIMDSMELAIIL 126

Query: 104 GL---PSALKAVGEAL-KLSSQKMEEG 126
                   L ++ + +  L+  ++  G
Sbjct: 127 EPWRKEYNLNSLIKEITNLNKDELHRG 153


>gi|163801804|ref|ZP_02195701.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
 gi|159174312|gb|EDP59116.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
          Length = 238

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 36/164 (21%)

Query: 2   ATLFIDFETRSPI-----------------------DLTKCGICKYAE-DVCVILFAFGF 37
             + +D ET                            LT      Y + D  +   A G 
Sbjct: 11  RIIVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQPEAIGV 70

Query: 38  DD-HPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIP 89
                  L D      + Q   + +      +VAHN+ F+   +   F            
Sbjct: 71  HGITDEFLVDKPDYSHVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLDPAIGKTDD 128

Query: 90  IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
             +   TL +A+         L  + E   + +        L+ 
Sbjct: 129 FCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLD 172


>gi|160885119|ref|ZP_02066122.1| hypothetical protein BACOVA_03117 [Bacteroides ovatus ATCC 8483]
 gi|156109469|gb|EDO11214.1| hypothetical protein BACOVA_03117 [Bacteroides ovatus ATCC 8483]
          Length = 1268

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 7/92 (7%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  +++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPIMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFVEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|152995426|ref|YP_001340261.1| 3'-5' exonuclease [Marinomonas sp. MWYL1]
 gi|150836350|gb|ABR70326.1| 3'-5' exonuclease [Marinomonas sp. MWYL1]
          Length = 195

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 38/162 (23%), Gaps = 26/162 (16%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L  D E      + + G           L     +     L+       +    K+ L N
Sbjct: 45  LGFDTE---SKPIFQKGQVSPGPS----LIQLATES-KAFLFPTRFPSAVAAA-KQILSN 95

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             +  +      +   L+   ++DI   +            L   LK +        +  
Sbjct: 96  PKIKKIGFGIKDDNKELRNKLDIDICNTQ-----------DLSVTLKQLA-----GEKNT 139

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
              +  +A        +     N   +         Y   D 
Sbjct: 140 IGARAAVAMVLGKRLGKGAQKSNWGAYPLK-EHQILYAANDA 180


>gi|27364640|ref|NP_760168.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
 gi|320155034|ref|YP_004187413.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
 gi|27360785|gb|AAO09695.1| DNA polymerase III epsilon subunit [Vibrio vulnificus CMCP6]
 gi|319930346|gb|ADV85210.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
          Length = 211

 Score = 38.2 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 43/161 (26%), Gaps = 55/161 (34%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVEL------ 44
            + +D ET S       L      K  ++         V L A    D   V++      
Sbjct: 30  YVSLDCETTSLDPNRAELVTIAATKIIDNRIITSKPFEVRLRAPQSLDSGSVKIHKIRHQ 89

Query: 45  --WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIP--------- 89
              D + +      L + +   +  +V ++  +++ +L           +          
Sbjct: 90  DLVDGLSEKEALLKLIDFI--GNRPLVGYHIRYDKKILDLACLRHLGFPLANPLVEVSQI 147

Query: 90  ---------IHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
                     + +              +L A+   L L  Q
Sbjct: 148 YHDKLEKHLPNAYFD-----------LSLDAICRHLDLPIQ 177


>gi|333029809|ref|ZP_08457870.1| DNA polymerase III, alpha subunit [Bacteroides coprosuis DSM 18011]
 gi|332740406|gb|EGJ70888.1| DNA polymerase III, alpha subunit [Bacteroides coprosuis DSM 18011]
          Length = 1261

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/91 (8%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           ++  +++      + + +   +    ++L+R     +  ++      +  +  ++   L 
Sbjct: 763 YDIPIMEKYLKDTYGITVYQEQV---MLLSRLLANFTRGESDALRKAMGKKLKDQLDVLK 819

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            +F  G        +        W  F  Y 
Sbjct: 820 PKFISGGKANGHDPKILEKIWGDWEKFASYA 850


>gi|322801849|gb|EFZ22421.1| hypothetical protein SINV_07950 [Solenopsis invicta]
          Length = 612

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 38/191 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L  D E              + ++  V L     ++  V L+       +P  LKE L 
Sbjct: 100 ILGFDCE--------------WVKEGPVSLLQLATNNGVVALFRIGKIGYIPFKLKELLA 145

Query: 63  NTDVTIVAHNSYF-ERTVLKACFNLDIPIHRWIC--TLVLARSNGLPSALKAVGE-ALKL 118
              +  V   S F +   L   +     ++  +   TL  + +     +L A+ E  L +
Sbjct: 146 TKHILKVGV-SSFEDGQKLVKDYG--CRVNGTLDLRTLADSLNLPSRKSLAAMCEQYLNI 202

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
              K      LI   C       L D               Y   D   +  I+ ++   
Sbjct: 203 EMDK------LIEVRCGDWDASTLSDDQVA-----------YAACDALASVIIYHKIMEK 245

Query: 179 SSKEQELWYLD 189
           + ++   W   
Sbjct: 246 NKEKYSFWQRL 256


>gi|126700009|ref|YP_001088906.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           630]
 gi|254975983|ref|ZP_05272455.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-66c26]
 gi|255093371|ref|ZP_05322849.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           CIP 107932]
 gi|255101551|ref|ZP_05330528.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-63q42]
 gi|255307420|ref|ZP_05351591.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           ATCC 43255]
 gi|255315116|ref|ZP_05356699.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-76w55]
 gi|255517786|ref|ZP_05385462.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-97b34]
 gi|255650901|ref|ZP_05397803.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-37x79]
 gi|260683972|ref|YP_003215257.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           CD196]
 gi|260687632|ref|YP_003218766.1| putative DNA polymerase III subunit epsilon [Clostridium difficile
           R20291]
 gi|306520788|ref|ZP_07407135.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-32g58]
 gi|115251446|emb|CAJ69279.1| DNA polymerase III, epsilon subunit [Clostridium difficile]
 gi|260210135|emb|CBA64288.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           CD196]
 gi|260213649|emb|CBE05485.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           R20291]
          Length = 168

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDI-PIHRWICT-----LVLARSN 103
            ++    ++ + +  +  +AHN+ F+   L      LD+ PI+ +ICT        +   
Sbjct: 71  ELVLPRFRKYIGDRTI--IAHNAKFDLKFLNYYLRMLDLEPINNYICTVELLKKCKSYK- 127

Query: 104 GLPSALKAVGEALKLSS 120
           G    L+       + +
Sbjct: 128 GKNKKLETACAYYNIEN 144


>gi|85058570|ref|YP_454272.1| DNA polymerase III subunit epsilon [Sodalis glossinidius str.
           'morsitans']
 gi|84779090|dbj|BAE73867.1| DNA polymerase III epsilon subunit [Sodalis glossinidius str.
           'morsitans']
          Length = 252

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     + K G+    E   +I      +                     D 
Sbjct: 7   RQIVLDTETTG---MNKLGVHY--EGHRIIEIG-AVEVINRRLTGRHFHVYLKPDRLVDP 60

Query: 41  PVELWDCVHDPVMPQVLKEALENTDVTI---------VAHNSYFERTVLKACFNL---DI 88
                  + D  +    K    +              V HN+ F+   +   F +    I
Sbjct: 61  EAFNVHGISDEFLAD--KPTFADVADEFLHFIRGGELVIHNAPFDIGFMDYEFGMLNRGI 118

Query: 89  PIHRWI----CTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                      +L+LAR        +L A+ +   + + K      L+ 
Sbjct: 119 AKTDTFCKVTDSLLLARKMFPGKRNSLDALCDRYLIDNSKRTLHGALLD 167


>gi|238026493|ref|YP_002910724.1| exonuclease, DNA polymerase III subunit epsilon family/GIY-YIG
           catalytic domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237875687|gb|ACR28020.1| Exonuclease, DNA polymerase III, epsilon subunit family/GIY-YIG
           catalytic domain protein [Burkholderia glumae BGR1]
          Length = 381

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 64  TDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL---PSALKAVGEALK 117
                +AHN+ F+R  L+A F            +CT+ L+R+         L A+ E   
Sbjct: 95  EGRFFIAHNASFDRGFLRAEFERAGYAFNP-DVLCTVRLSRALFPRESRHGLDALIERHA 153

Query: 118 L 118
           L
Sbjct: 154 L 154


>gi|149196457|ref|ZP_01873512.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155]
 gi|149140718|gb|EDM29116.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155]
          Length = 372

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 45/192 (23%)

Query: 2   ATLFIDFE---TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
             + +D E   T++   +      K A                + L D + +    ++LK
Sbjct: 21  KDIALDTEFVWTKTFHPIPGLLQIKSA--------------GEIHLIDLLIENFPKEILK 66

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS--ALKAVG-EA 115
           E LE+ DV  + H+   +  + K   + +        T +     G P   +L  +  E 
Sbjct: 67  ELLESRDVCKILHSPDQDLKLFKLFCDAEAK--NIFDTQLAYAFTGAPKQVSLAKLCLEM 124

Query: 116 LKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV----TVTREI 171
           + +   K ++  +   R  K                        Y   DV     +T  +
Sbjct: 125 MDIEISKTQQVSDWTKRPLKDSQLN-------------------YAAEDVRYLIEITETL 165

Query: 172 FKRLEPLSSKEQ 183
            ++L+     + 
Sbjct: 166 REKLKENGRYDW 177


>gi|237750780|ref|ZP_04581260.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879]
 gi|229373225|gb|EEO23616.1| DNA polymerase III subunit epsilon [Helicobacter bilis ATCC 43879]
          Length = 268

 Score = 38.2 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 28/123 (22%)

Query: 2   ATLFIDFETRSPI----DLTKCGI-----CKYAEDVCVILFAFGFDDHPVELWDCV---- 48
              F+D ET S       + + G       +  +    ++++    +    + D      
Sbjct: 79  KLCFVDIETTSASVKNGQIIEIGAIIAQNGEILDTFDTLVYSPFVPED---IIDLTGIDS 135

Query: 49  -------HDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIPI--HRWICTLV 98
                      + +  +  L ++    VAHN  F+   +    +  D+P   +  +CTL 
Sbjct: 136 YMLEDAPRLEQVLKQFRAFLGDS--VFVAHNVSFDYNFIAESLHEYDMPPLFNPRLCTLD 193

Query: 99  LAR 101
           L+R
Sbjct: 194 LSR 196


>gi|240143784|ref|ZP_04742385.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257204219|gb|EEV02504.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 228

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 25/105 (23%), Gaps = 30/105 (28%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA- 60
             +F D ET          I   A  V         D              +P+ + E  
Sbjct: 6   KIVFFDTETTGLDPEKDQIIELAAALVTENGIELKID----AFCKLPEGEKIPEKIVELT 61

Query: 61  ------LENTDV-------------------TIVAHNSYFERTVL 80
                 L +  +                    +VAHN  F+   +
Sbjct: 62  HITDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFI 106


>gi|256818923|ref|YP_003140202.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
           7271]
 gi|256580506|gb|ACU91641.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
           7271]
          Length = 442

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 63/228 (27%), Gaps = 56/228 (24%)

Query: 6   IDFETRSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV--ELWDCVHDPVMPQVLKEALE 62
           +D ET            KY E+  +   A + F+ H +  +    ++     Q     L 
Sbjct: 5   LDIETTG---------GKYNEEG-ITDIAIYQFNGHEITDQFISLINPERPIQEFVTKLT 54

Query: 63  -----------------------NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT 96
                                   TD  IV HN+ F+  +L+        D  +   +CT
Sbjct: 55  GINNKMLRNAPKFYEVAKRIVEITTDCIIVGHNAAFDYRILQTEFRRLGYDF-VRTTLCT 113

Query: 97  LVLARSNGL---PSALKAVGEALKLS--SQKMEEGKELIARFCKGETHECLYDRNKPNHR 151
           + L+          +L  +  +L +    +    G  L          E    ++     
Sbjct: 114 VELSERLIPNKESYSLGKLVRSLGIPVSDRHRASGDALATLKLFKYLLEKDTKKDIITTS 173

Query: 152 EAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCV 199
                       D+ +      R   +     E   +    N+ G  +
Sbjct: 174 VK---------QDIRLEMA--SRHLKILDTLPETLGIFYMHNEEGKVI 210


>gi|300777777|ref|ZP_07087635.1| DNA-directed DNA polymerase III epsilon subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300503287|gb|EFK34427.1| DNA-directed DNA polymerase III epsilon subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 184

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 40/150 (26%)

Query: 1   MATLFIDFETRSPIDLTKCGICK-YAEDVCVILFAFGFDDHPVELWDCVHDPVM------ 53
           M    IDFET +    + C +     +D  ++       +    L      P        
Sbjct: 1   MDFCAIDFETATHEKSSACEMGICVVQDSKIV-------ETKTWLIKPPSFPYFSKFNIA 53

Query: 54  -----PQVLKEALENTDV-----------TIVAHNSYFERTVLK---ACFNLDIPIHRWI 94
                P+ +K+A    ++            ++AHN+ F+ +VL+     + +  P   ++
Sbjct: 54  VHGIQPEDVKDAPTFDEIWYEAQDMMYGSLMIAHNAGFDASVLRGCLEHYGMFTPKLNYL 113

Query: 95  CTLVLA-----RSNGLPSALKAVGEALKLS 119
           C++ LA             LK + E  K+ 
Sbjct: 114 CSIQLAKKSWNYL--PKYGLKPLAEYHKID 141


>gi|224092356|ref|XP_002309573.1| predicted protein [Populus trichocarpa]
 gi|222855549|gb|EEE93096.1| predicted protein [Populus trichocarpa]
          Length = 364

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 4/135 (2%)

Query: 301 DGRLRGTLQFLGASRTGRWSGCVFP-PQNLPRPSRSHEELDQIITHLPTSITSDPDPLQI 359
           +GRL  +     +S     S  +     N+       +    +  H      +     + 
Sbjct: 202 NGRLLTSNVSFCSSLNPGLSYRLVNVLANMELWGMGVDMEGCLQAHTVLRKKAKGSREEG 261

Query: 360 ISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFE-TGEDLYVTTYARSFN 418
           +           +   L+ AD + IE R++   + +   ++       D+++   AR   
Sbjct: 262 LRLSWHDIFT--DNWLLLTADYSQIELRLMEHFSKDSTLIELPAKPHGDVFIMIAARWTG 319

Query: 419 VAPAQVTKDQRAIGK 433
                V   +R   K
Sbjct: 320 KPEDSVNSVERDQTK 334


>gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree]
 gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 1432

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 21/137 (15%)

Query: 4   LFIDFETRS---PIDLTKCGICKYAEDVCVI-LFAFGFDDH----------PVELWDCVH 49
           +  D ET       D          E   ++  F+   +                 D V 
Sbjct: 419 VVFDLETTGFSNKNDKIIEIGAVKIEKGKIVDRFSEFVNPGRSIPDKITELTSITDDMVQ 478

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIPIHR-WICTLVLARSNGL 105
           D      +     +   D  +VAHN+ F+ + + K C +L I      + T+ L+R    
Sbjct: 479 DKETIDKILPRFIDFIGDSVVVAHNAAFDVSFINKNCKDLKIEFENSVMDTVTLSRFLFP 538

Query: 106 P---SALKAVGEALKLS 119
                 L  + + L +S
Sbjct: 539 ELKRYKLNVIAKHLGIS 555


>gi|153835770|ref|ZP_01988437.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01]
 gi|156975479|ref|YP_001446386.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
 gi|148867537|gb|EDL66875.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01]
 gi|156527073|gb|ABU72159.1| hypothetical protein VIBHAR_03210 [Vibrio harveyi ATCC BAA-1116]
          Length = 238

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 11/98 (11%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWIC 95
            L D      + Q   + +      +VAHN+ F+   +   F              +   
Sbjct: 77  FLVDKPEYSAVHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEMLNPSIGKTDDYCKVTD 134

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           TL +A+         L  + E   + +        L+ 
Sbjct: 135 TLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLD 172


>gi|41406411|ref|NP_959247.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254773395|ref|ZP_05214911.1| DNA polymerase III subunit epsilon [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|41394760|gb|AAS02630.1| DnaQ [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 329

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 25/146 (17%)

Query: 6   IDFETRS-------PIDLTKCGICK--YAEDVCVILFAFGFDDHPVELW--------DCV 48
           ID ET          I L   G+      E   V L   G D  P  +         D  
Sbjct: 20  IDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPGVDPGPTHVHGLTAAMLEDQP 79

Query: 49  HDPVMPQVLKEALENTDVTIVAHNSYFER---TVLKACFNLDIPIHRWICTLVLARSNGL 105
               +   + E L     T+VAHN  F+            +++P+   +CT+ LAR   L
Sbjct: 80  QFADIAGDVVEVLR--GRTLVAHNVAFDYAFLAAEAELAGIELPVDTVMCTVELARRLDL 137

Query: 106 P---SALKAVGEALKLSSQKMEEGKE 128
                 L+ +     ++ Q+  +  +
Sbjct: 138 GIDNLRLETLAAHWGVTQQRPHDAFD 163


>gi|327314590|ref|YP_004330027.1| 3'-5' exonuclease [Prevotella denticola F0289]
 gi|326944244|gb|AEA20129.1| 3'-5' exonuclease [Prevotella denticola F0289]
          Length = 224

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 59/209 (28%), Gaps = 30/209 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + ID ETR         + +  +   V L      D  V     ++   +P  +K  L
Sbjct: 46  DIIGIDTETR--------PVFRKGQHHKVALLQAC--DREVCFLFRLNIIGIPDCVKRFL 95

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+T V  V  +   +  +L            +I              L+   ++L +   
Sbjct: 96  EDTTVPKVGLSLGDDMLML--HQRSAFKPGYFID-------------LQDYVKSLGIEDM 140

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSK 181
            +++    +      E        +   ++        Y   D      +++RL      
Sbjct: 141 SLQKLYANV----FHERITKREQLSNWENQILNDKQKLYASTDAWTCINLYERLHE-LKH 195

Query: 182 EQELWYLDQTINDRGYCVDVALAHTLNQI 210
             +   +     +    +    A    +I
Sbjct: 196 TGDYELVVVHEKEHTDSIQTEKATESIRI 224


>gi|310766705|gb|ADP11655.1| DNA polymerase III subunit epsilon [Erwinia sp. Ejp617]
          Length = 252

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 43/167 (25%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD---------------------DH 40
             + +D ET     +       + E   +I      +                     D 
Sbjct: 8   RQIVLDTETTGMNMI-----GVHYEGHRIIEIG-AVEVINRRLTGNNFHVYLKPDRLIDP 61

Query: 41  PVELWDCVHDPVMPQV--LKEALEN-----TDVTIVAHNSYFERTV-------LKACFNL 86
                  + D  +       +  ++         +V HN+ F+          L+     
Sbjct: 62  EAFGVHGIADEFLLDKPTFAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAK 121

Query: 87  DIPIHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                +   +L +AR        +L A+    ++ + K      L+ 
Sbjct: 122 TETFCKITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLD 168


>gi|294794415|ref|ZP_06759551.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
 gi|294454745|gb|EFG23118.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
          Length = 862

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 48  VHDPVMPQVLKEALE-NTDVTIVAHNSYFERTV----LKACFNLDIPIHRWICTL 97
            H      VLK   E + D  IV HN  ++ T+    L      +        TL
Sbjct: 555 EHGEDPATVLKAFKEFSKDAIIVGHNVNYDVTIFTNELARHNLGNPEFKAIYDTL 609


>gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
           14600]
 gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
           14600]
          Length = 1532

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 23/139 (16%)

Query: 4   LFIDFETRS----PIDLTKCGICKYAEDVCV-----------ILFAFGFDDHPVELWDCV 48
           +  D ET         + + G  +  E   +               F   +      D V
Sbjct: 501 VVFDIETTGFSAEKDRIIEIGAVR-MEGGRITDRFSSFVNPGRPIPFRITELTSIRDDMV 559

Query: 49  HDPVMPQVLKEALE--NTDVTIVAHNSYFERTVLK-ACFNLDIP-IHRWICTLVLARSNG 104
                 + +       +    +VAHN+ F+   ++  C  L +     ++ T+ + R   
Sbjct: 560 IGSAGIEEVLPDFLAFSQGAIMVAHNADFDMGFIRQNCLRLHLEAPATYMDTVAMGRYLM 619

Query: 105 LPSA---LKAVGEALKLSS 120
                  L  + +ALK+  
Sbjct: 620 PSLHNQKLNTLAKALKIDP 638


>gi|254508645|ref|ZP_05120760.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16]
 gi|219548402|gb|EED25412.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16]
          Length = 247

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 11/98 (11%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWIC 95
            L D      +     E +      +VAHN+ F+   +   F              +   
Sbjct: 77  FLVDKPEYQDVHAEFLEFI--KGAELVAHNAPFDTGFMDYEFEMLDPSIGKTDDYCKVTD 134

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           TL +A+         L  + +   + +        L+ 
Sbjct: 135 TLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLD 172


>gi|90581658|ref|ZP_01237447.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
 gi|90437142|gb|EAS62344.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
          Length = 241

 Score = 38.2 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 38/167 (22%), Gaps = 43/167 (25%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFD------DHPVELWDCVHDPVMPQ 55
             +  D ET             + E   +I      +                 D  +  
Sbjct: 7   RIIVFDTETTGMNM-----TGPHYEGHRIIEIG-AVEIINRKLTGKTFHVYIKPDRPIDP 60

Query: 56  VLKEA--LENT--------------------DVTIVAHNSYFERTVLKA---CFNLDIP- 89
              +   + +                        +VAHN+ F+   +         D+  
Sbjct: 61  EAIDVHGITDEFLIGKPSYADIHQEFIDFIDGAELVAHNASFDIGFMDYEFQLMGSDLKK 120

Query: 90  ---IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
              I +   TL +A+         L  +     + +        L+ 
Sbjct: 121 TEDICKVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLD 167


>gi|323344416|ref|ZP_08084641.1| DNA-directed DNA polymerase III alpha subunit [Prevotella oralis
           ATCC 33269]
 gi|323094543|gb|EFZ37119.1| DNA-directed DNA polymerase III alpha subunit [Prevotella oralis
           ATCC 33269]
          Length = 1235

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/93 (9%), Positives = 29/93 (31%), Gaps = 9/93 (9%)

Query: 74  YFERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKE 128
            ++   ++      + + +   +    ++L+R   G     ++      +  +K      
Sbjct: 736 QYDIPCMEKYLKDTYGITVYQEQV---MLLSRQLAGFTRG-ESDALRKAMGKKKKAIVDA 791

Query: 129 LIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
           +  +F +G   +    +        W  F  Y 
Sbjct: 792 MKPKFIEGGKKKGHDPKVLEKIWTDWEKFASYA 824


>gi|229586838|ref|YP_002845339.1| Ribonuclease D [Rickettsia africae ESF-5]
 gi|228021888|gb|ACP53596.1| Ribonuclease D [Rickettsia africae ESF-5]
          Length = 281

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 44/172 (25%), Gaps = 36/172 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E             +Y     + +     +++   +    +      +  + L +
Sbjct: 23  LSIDTE----------FERRYTYYAQLSIIQVKAEEYCGIIDALSNLD--LNIFNKLLAD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEAL-KLSS 120
            ++T + H    +  +    FN            + A   G    L    +   L  ++ 
Sbjct: 71  NNITKIFHAPREDLEIFYNLFN--TLPANVFDIQIAANICGFGKQLSYDDLCYKLIGITI 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            K  +    + R                           Y   DV    +I+
Sbjct: 129 DKTHQKSNWLKRPITS-------------------DMLNYAMLDVEYLYKIY 161


>gi|255656369|ref|ZP_05401778.1| putative DNA polymerase III, epsilon chain [Clostridium difficile
           QCD-23m63]
 gi|296450182|ref|ZP_06891943.1| epsilon subunit family exonuclease [Clostridium difficile NAP08]
 gi|296878563|ref|ZP_06902568.1| epsilon subunit family exonuclease [Clostridium difficile NAP07]
 gi|296260945|gb|EFH07779.1| epsilon subunit family exonuclease [Clostridium difficile NAP08]
 gi|296430370|gb|EFH16212.1| epsilon subunit family exonuclease [Clostridium difficile NAP07]
          Length = 168

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDI-PIHRWICT-----LVLARSN 103
            ++    ++ + +  +  +AHN+ F+   L      L++ PI+ +ICT        +   
Sbjct: 71  ELVLPRFRKYIGDRTI--IAHNAKFDLKFLNYYLRMLNLEPINNYICTVELLKKCKSYK- 127

Query: 104 GLPSALKAVGEALKLSS 120
           G    L+       + +
Sbjct: 128 GKNKKLETACAYYNIEN 144


>gi|169794713|ref|YP_001712506.1| putative DNA exonuclease X [Acinetobacter baumannii AYE]
 gi|169147640|emb|CAM85503.1| putative DNA exonuclease X [Acinetobacter baumannii AYE]
          Length = 245

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 69  VAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKLSSQKMEE 125
           + HN  ++   +K     D    + ICTL +AR          L A+   +    +    
Sbjct: 88  IGHNIDYDIEAVKRA-GADTTGIKSICTLAMARYLWPTLEAHNLTALAYHISRDRKSTRR 146

Query: 126 G 126
           G
Sbjct: 147 G 147


>gi|17508353|ref|NP_493066.1| hypothetical protein M01G12.5 [Caenorhabditis elegans]
 gi|3878654|emb|CAB04614.1| C. elegans protein M01G12.5, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 268

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAE-DVCVILFAFGFDDHP-VELWDCVHDPVMPQVLK 58
           M  ++I+ ET   +   K G     + +  V+      D    V  +    +  + + LK
Sbjct: 107 MNFIWINLETNMELSCEKTGAQMAQDKEFKVLSIPLAGDAGKFVVFFPENQEETIEESLK 166

Query: 59  EA-------LENTDVTIVAHNSYFERTVLK 81
           +        L +  V    H   FE  V K
Sbjct: 167 KLNTRKFQRLIDDLVPKFIH---FEHPVFK 193


>gi|58263260|ref|XP_569040.1| hypothetical protein CNB05310 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57223690|gb|AAW41733.1| hypothetical protein CNB05310 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 912

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 50/187 (26%), Gaps = 29/187 (15%)

Query: 3   TLFIDFE-TRSPIDLTKCGICKYAEDVC---VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
            L  D E   S   +      +Y  D       L     D+  + L        +P  + 
Sbjct: 311 ILGFDLEWATSYNKVWDASTGRY--DFQQYPTALVQLC-DEKMIVLIHLQDKMDLPAKVA 367

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE-ALK 117
           E + +  +  +   S  +   L   F                     P+ L  +   A  
Sbjct: 368 ELVRDPKIYKLGVQSMGDGRKLVRDFPHHFRQGG-------------PAGLYELSRMAHA 414

Query: 118 LSSQKMEEGKELIA-------RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           +  Q+   G  LI           K    +    R      E   +   Y   DV V+ +
Sbjct: 415 IDPQRAGHGSRLIKLATLCRAYLGKELDKDTKIRRG-DWAGELNEVQKAYAANDVFVSIQ 473

Query: 171 IFKRLEP 177
           IF  L  
Sbjct: 474 IFNALRK 480


>gi|134107722|ref|XP_777472.1| hypothetical protein CNBB0460 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260164|gb|EAL22825.1| hypothetical protein CNBB0460 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 912

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 50/187 (26%), Gaps = 29/187 (15%)

Query: 3   TLFIDFE-TRSPIDLTKCGICKYAEDVC---VILFAFGFDDHPVELWDCVHDPVMPQVLK 58
            L  D E   S   +      +Y  D       L     D+  + L        +P  + 
Sbjct: 311 ILGFDLEWATSYNKVWDASTGRY--DFQQYPTALVQLC-DEKMIVLIHLQDKMDLPAKVA 367

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGE-ALK 117
           E + +  +  +   S  +   L   F                     P+ L  +   A  
Sbjct: 368 ELVRDPKIYKLGVQSMGDGRKLVRDFPHHFRQGG-------------PAGLYELSRMAHA 414

Query: 118 LSSQKMEEGKELIA-------RFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTRE 170
           +  Q+   G  LI           K    +    R      E   +   Y   DV V+ +
Sbjct: 415 IDPQRAGHGSRLIKLATLCRAYLGKELDKDTKIRRG-DWAGELNEVQKAYAANDVFVSIQ 473

Query: 171 IFKRLEP 177
           IF  L  
Sbjct: 474 IFNALRK 480


>gi|323512647|gb|ADX88101.1| DNA polymerase [Vibrio phage ICP1_2006_D]
 gi|323512875|gb|ADX88328.1| DNA polymerase [Vibrio phage ICP1_2006_C]
 gi|323513103|gb|ADX88555.1| DNA polymerase [Vibrio phage ICP1_2006_B]
 gi|323513330|gb|ADX88781.1| DNA polymerase [Vibrio phage ICP1_2006_A]
 gi|323513557|gb|ADX89007.1| DNA polymerase [Vibrio phage ICP1_2005_A]
          Length = 903

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 87/323 (26%), Gaps = 51/323 (15%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQE----LESLTYGLVSSSRCLEKLKTWLFLETG 248
                  D      +NQ + VE  K+        + +           +     L  E G
Sbjct: 440 EYILEKKDSVYLPWINQEMGVEIHKITSRNHPDFKKVVKKARFLVTSPK-----LKDERG 494

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA--MNSDGRLRG 306
               +L +   +           + + + N R         K    +    +  DG+L  
Sbjct: 495 ELCPNLEKIDGE-----MASKIVKWLSLRNRRSVIKAIDETKETGWLNHPRLKKDGKLPA 549

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                G + T R    V    N+P                            ++   +RS
Sbjct: 550 RYS--GLTNTNRRKHSVI--ANIP------------------------GSDALLGHEMRS 581

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
                EG   V  D + +E    A  A        +        T  A++++ A  +   
Sbjct: 582 LFTVPEGFWQVGIDGSNLEGFCAANAAFPFDNGAYYRGLSGDPHTENAKAYSKAAGRTVS 641

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             R+ GK +   + Y   A     M     L ++        N+  +     +    W++
Sbjct: 642 --RSEGKGITYGVLYGAQAAKVSSM-----LGISKDQAQNVINAFWDTNYGLKGCKEWLE 694

Query: 487 ENHPEHAIEDLFIGTACERVKKA 509
           +       + +      +   ++
Sbjct: 695 KYWESTGKKYILGIDKRKIWTRS 717



 Score = 37.0 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 44/181 (24%), Gaps = 32/181 (17%)

Query: 71  HNS-YFERTVLKACFN----------LDIPIHRWICTLVLARSNGLPSAL--KAVGEALK 117
            N   F+                   ++    R   TL ++R       L      +   
Sbjct: 88  QNLEGFDMLAFSHILGTKYEKIPVEKINGKEIRVFDTLSMSRGLYPDRPLPRGCPAKVKN 147

Query: 118 LSSQKMEEG--KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-TREIFKR 174
               K +      L A    G          +         + +    DV +   +    
Sbjct: 148 PQGGKAKSIGPHSLEAW---GVKVANKKVAIEDWKGLPLWKYVDRVWEDVIINELQWNAL 204

Query: 175 LEPL-------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           ++ +                     +L Q   ++G       A  L   +D    ++++E
Sbjct: 205 IKEMQDGKDKGVDWKMALKHNLLADHLMQVQEEQGVVFREDKALELVDKIDQMMKEIEEE 264

Query: 222 L 222
           +
Sbjct: 265 V 265


>gi|215509404|gb|EEC18857.1| DNA polymerase gamma, putative [Ixodes scapularis]
          Length = 1055

 Score = 38.2 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 92/349 (26%), Gaps = 72/349 (20%)

Query: 329 LPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARV 388
           LPR   +     + +   PT +T+       +   ++S V A +G  +V AD+   E  +
Sbjct: 692 LPRLIPAGTVTRRAVE--PTWLTASNAYKDRVGSELKSMVQAPKGYHIVGADVDSQELWI 749

Query: 389 LAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVT----KDQRAIGKVMELALGYQGG 444
            + +A   +      T          ++        T       R   KV+  A  Y  G
Sbjct: 750 ASILADAHFAEMHGCTAIGWMTLQGNKAVGTDMHSRTATSVGISRDQAKVINYARIYGAG 809

Query: 445 AKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACE 504
               Q++       L+      K      + +                            
Sbjct: 810 QPFAQRLLMQFNHRLDAQEASTKAKKMYAQTKGV-------------------------- 843

Query: 505 RVKKAWRQKHSRVSELWNELHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPS 564
                 R     V E      +   +  E G       + +      +     L      
Sbjct: 844 ------RVAVPEVVEGQQVFVRGKRKVWEGGSESHMFNKLEAIADSEEPRTPVLGCR--- 894

Query: 565 GRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKL---TENIVQAVSRD------ILAEGMM 615
                              +R L                +VQ+ + D      I    +M
Sbjct: 895 ------------------ISRALEPAAVDTNFFNSRINWVVQSSAVDYLHLMLITMRWLM 936

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNAS---MLYHLMTSN-PSWAKG 660
           +         +++HDE+       D + A+    + +L+T    +W  G
Sbjct: 937 DDYAIQGRFAVSIHDEVRFLVASEDRYRAALALQVTNLLTRAFFAWKLG 985


>gi|150864715|ref|XP_001383656.2| structural maintenance of chromosomes protein [Scheffersomyces
           stipitis CBS 6054]
 gi|149385971|gb|ABN65627.2| structural maintenance of chromosomes protein [Scheffersomyces
           stipitis CBS 6054]
          Length = 1093

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/123 (9%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLT 226
           +T+E    +     + ++ + +     + GY V+     + ++ +  E  K   +++  T
Sbjct: 644 LTQEAKDFMNGQLQEFKDRYNVL-KGEEDGYLVEKQSLDSESRKLSAELEKYKNKIQHFT 702

Query: 227 YGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAI-QVFNNRMRASR 285
               + ++   KL           ++  T+ + +       +   +   +  +   + S 
Sbjct: 703 NETKNRAKIEGKLTA-----LDAQIKKTTKESTEDTSEQVDETEEKIKSKYLDYSNKLSE 757

Query: 286 SAV 288
            ++
Sbjct: 758 LSI 760


>gi|328948895|ref|YP_004366232.1| DNA polymerase III subunit epsilon [Treponema succinifaciens DSM
           2489]
 gi|328449219|gb|AEB14935.1| DNA polymerase III, epsilon subunit [Treponema succinifaciens DSM
           2489]
          Length = 216

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 51/192 (26%), Gaps = 45/192 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA--L 61
           +  D ET       +  I   A                           +PQ +K+   +
Sbjct: 23  VAFDTETTGLKAEKEFIIEIGAVKFNCDGI-----IGEPFDILIKPPIELPQFIKDLTHI 77

Query: 62  ENT----------------------DVTIVAHNSYFERTV----LKACFNLDIPIHRWIC 95
            +                       +  +VAHN+ F+       LK   + ++P +  I 
Sbjct: 78  TDKMISCCPCAKEAVPQFLNFVGGKETVLVAHNAQFDLGFINSELKRFSHPELP-NVCID 136

Query: 96  TLVLARSNGLP---------SALKAVGEALKLSSQKMEEGKELIARFCKGET--HECLYD 144
           TL  +R                L+++ +   + ++      +      +          D
Sbjct: 137 TLNASRWAYPDFIKEQEKGQYKLQSLAKRFGIEAKAAHRANDDARLCMEIFKRIISDTMD 196

Query: 145 RNKPNHREAWRL 156
           + K    +  + 
Sbjct: 197 KQKNFSIDKIKR 208


>gi|320535302|ref|ZP_08035422.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Treponema phagedenis F0421]
 gi|320147834|gb|EFW39330.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Treponema phagedenis F0421]
          Length = 216

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 42/155 (27%), Gaps = 38/155 (24%)

Query: 5   FIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA---- 60
             D ET          +               F+              MP+ +       
Sbjct: 17  AFDTETTGLKQEEDSVVEIGGIKFDHRGVIARFN------ILINPGKPMPEDVTAVNNIT 70

Query: 61  ---LENT---------------DVTIVAHNSYFERTV----LKACFNLDIPIHRWICTLV 98
              L +                   +VAHN+ F+       LK C    +  ++ I TLV
Sbjct: 71  DAMLADKPPFNAVIPDFLRFIKKTVLVAHNAPFDIGFINNELKRCKKPPL-TNKVIDTLV 129

Query: 99  LARSNGLPSA-----LKAVGEALKLSSQKMEEGKE 128
           LA+            L+ +     +++ +    ++
Sbjct: 130 LAQEVFPGLGKHQYRLQNLALQFGITALEAHRAED 164


>gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
 gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus parasanguinis F0405]
          Length = 1464

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 29/119 (24%), Gaps = 11/119 (9%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPSA 108
            + +  +   E     +VAHN+ F+   +        +P      I T            
Sbjct: 493 QVLKEFQAFCE--GTVLVAHNATFDVGFMNANYERHGLPKITQPVIDT------LEFARN 544

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L    +   L       G  L          E          ++     G     D+ +
Sbjct: 545 LYPDFKRHGLGPLTKRFGVGLEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNI 603


>gi|212693673|ref|ZP_03301801.1| hypothetical protein BACDOR_03193 [Bacteroides dorei DSM 17855]
 gi|237708836|ref|ZP_04539317.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|237724269|ref|ZP_04554750.1| DNA polymerase III alpha subunit [Bacteroides sp. D4]
 gi|265755905|ref|ZP_06090372.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_33FAA]
 gi|212663785|gb|EEB24359.1| hypothetical protein BACDOR_03193 [Bacteroides dorei DSM 17855]
 gi|229437457|gb|EEO47534.1| DNA polymerase III alpha subunit [Bacteroides dorei 5_1_36/D4]
 gi|229457262|gb|EEO62983.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|263233983|gb|EEZ19584.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_33FAA]
          Length = 1265

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 7/92 (7%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  +++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPIMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|262405023|ref|ZP_06081575.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
 gi|262348862|gb|EEY98003.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
          Length = 209

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 44/159 (27%), Gaps = 51/159 (32%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELWDCVHD 50
            + +D ET S       L      K  ++         V L A    D   V +    H 
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIVDNRILTSQPFEVRLCAPQSLDSGSVRIHKIRHQ 89

Query: 51  PVMP----QVLKEALEN--TDVTIVAHNSYFERTVL----KACFNLDIP----------- 89
            +      +     L +   +  +V ++  +++T+L    +      +P           
Sbjct: 90  DLQDGLSEKEALILLIDFIGNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQIYH 149

Query: 90  -------IHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
                   + +              +L A+   L L  Q
Sbjct: 150 DKLEKHLPNAYFD-----------LSLDAICRHLDLPLQ 177


>gi|123399150|ref|XP_001301417.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121882596|gb|EAX88487.1| hypothetical protein TVAG_209380 [Trichomonas vaginalis G3]
          Length = 967

 Score = 38.2 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 14/74 (18%)

Query: 7   DFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDV 66
           DFE  +  D+ K     Y ED          DD    +W         Q   EAL +   
Sbjct: 582 DFEASTDGDIHKAYNICYMEDD---------DDSYTSIW----GDNCAQKFLEALPDKS- 627

Query: 67  TIVAHNSYFERTVL 80
            +  HN  ++ T L
Sbjct: 628 LVYFHNLSYDITFL 641


>gi|323513790|gb|ADX89239.1| DNA polymerase [Vibrio phage ICP1_2001_A]
 gi|323514018|gb|ADX89466.1| DNA polymerase [Vibrio phage ICP1_2004_A]
          Length = 903

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 87/323 (26%), Gaps = 51/323 (15%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQE----LESLTYGLVSSSRCLEKLKTWLFLETG 248
                  D      +NQ + VE  K+        + +           +     L  E G
Sbjct: 440 EYILEKKDSVYLPWINQEMGVEIHKITSRNHPDFKKVVKKARFLVTSPK-----LKDERG 494

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA--MNSDGRLRG 306
               +L +   +           + + + N R         K    +    +  DG+L  
Sbjct: 495 ELCPNLEKIDGE-----MASKIVKWLSLRNRRSVIKAIDETKETGWLNHPRLKKDGKLPA 549

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                G + T R    V    N+P                            ++   +RS
Sbjct: 550 RYS--GLTNTNRRKHSVI--ANIP------------------------GSDALLGHEMRS 581

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
                EG   V  D + +E    A  A        +        T  A++++ A  +   
Sbjct: 582 LFTVPEGFWQVGIDGSNLEGFCAANAAFPFDNGAYYRGLSGDPHTENAKAYSKAAGRTVS 641

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             R+ GK +   + Y   A     M     L ++        N+  +     +    W++
Sbjct: 642 --RSEGKGITYGVLYGAQAAKVSSM-----LGISKDQAQNVINAFWDTNYGLKGCKEWLE 694

Query: 487 ENHPEHAIEDLFIGTACERVKKA 509
           +       + +      +   ++
Sbjct: 695 KYWESTGKKYILGIDKRKIWTRS 717



 Score = 37.0 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 44/181 (24%), Gaps = 32/181 (17%)

Query: 71  HNS-YFERTVLKACFN----------LDIPIHRWICTLVLARSNGLPSAL--KAVGEALK 117
            N   F+                   ++    R   TL ++R       L      +   
Sbjct: 88  QNLEGFDMLAFSHILGTKYEKIPVEKINGKEIRVFDTLSMSRGLYPDRPLPRGCPAKVKN 147

Query: 118 LSSQKMEEG--KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-TREIFKR 174
               K +      L A    G          +         + +    DV +   +    
Sbjct: 148 PQGGKAKSIGPHSLEAW---GVKVANKKVAIEDWKGLPLWKYVDRVWEDVIINELQWNAL 204

Query: 175 LEPL-------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           ++ +                     +L Q   ++G       A  L   +D    ++++E
Sbjct: 205 IKEMQDGKDKGVDWKMALKHNLLADHLMQVQEEQGVVFREDKALELVDKIDQMMKEIEEE 264

Query: 222 L 222
           +
Sbjct: 265 V 265


>gi|163754237|ref|ZP_02161360.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
 gi|161326451|gb|EDP97777.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
          Length = 457

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKACFN-LDIPIHR-WICTLVLARSN 103
               P   ++ KE L    D   VAHN  F+  V++  F  +D+   R  +CT+ L+R+ 
Sbjct: 63  VADAPTFAEIAKEVLSITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKKLCTVRLSRAL 122

Query: 104 GL---PSALKAVGEALKL 118
                  +L  + ++L +
Sbjct: 123 IPGFKSYSLGKLCKSLNI 140


>gi|150004438|ref|YP_001299182.1| DNA polymerase III alpha subunit [Bacteroides vulgatus ATCC 8482]
 gi|294775512|ref|ZP_06741024.1| putative DNA polymerase III subunit alpha [Bacteroides vulgatus
           PC510]
 gi|149932862|gb|ABR39560.1| DNA polymerase III alpha subunit [Bacteroides vulgatus ATCC 8482]
 gi|294450657|gb|EFG19145.1| putative DNA polymerase III subunit alpha [Bacteroides vulgatus
           PC510]
          Length = 1265

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 7/92 (7%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  +++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPIMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|153815178|ref|ZP_01967846.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
 gi|145847437|gb|EDK24355.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
          Length = 279

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 37/143 (25%), Gaps = 27/143 (18%)

Query: 3   TLFIDFETRSPIDLTKCGICKYA---EDVCV-----------ILFAFGFDDHPVE----L 44
            +  D ET     +    I   A    D  V            L +             +
Sbjct: 39  YIAFDLETTGLDPMNNEIIEIGALKVRDGKVSERFMEFIKPQELISPAITGLTGISNDMV 98

Query: 45  WDCVHDPVMPQVLKEALENTDVTIVAHNSYFER---TVLKACFNLDIPIHRWICTLVLAR 101
                   +     +  E     ++ HN  F+        A   L         TL +A+
Sbjct: 99  ASARPARSVITDFIDFCEED--ILIGHNIIFDYSFTKCTAAREGLPFEKMGI-DTLKIAK 155

Query: 102 SNGL---PSALKAVGEALKLSSQ 121
                    +L A+ E  K+ ++
Sbjct: 156 KVHPELESKSLSALCEHYKIENK 178


>gi|90414055|ref|ZP_01222038.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
 gi|90324850|gb|EAS41378.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
          Length = 246

 Score = 38.2 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 11/90 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSN 103
             +     E +      +VAHN+ F+   +   F              +   TL +A+  
Sbjct: 84  KEVHDEFLEFI--KGAELVAHNAPFDVGFMDYEFRKLNPNIGKTEDFCKVTDTLAMAKKI 141

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  L  +     + +        L+ 
Sbjct: 142 FPGKRNNLDILCSRYGIDNSHRTLHGALLD 171


>gi|325171024|ref|YP_004250999.1| DNA polymerase [Vibrio phage ICP1]
 gi|323512419|gb|ADX87874.1| DNA polymerase [Vibrio phage ICP1]
          Length = 903

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 87/323 (26%), Gaps = 51/323 (15%)

Query: 193 NDRGYCVDVALAHTLNQIVDVERTKLDQE----LESLTYGLVSSSRCLEKLKTWLFLETG 248
                  D      +NQ + VE  K+        + +           +     L  E G
Sbjct: 440 EYILEKKDSVYLPWINQEMGVEIHKITSRNHPDFKKVVKKARFLVTSPK-----LKDERG 494

Query: 249 LHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA--MNSDGRLRG 306
               +L +   +           + + + N R         K    +    +  DG+L  
Sbjct: 495 ELCPNLEKIDGE-----MASKIVKWLSLRNRRSVIKAIDETKETGWLNHPRLKKDGKLPA 549

Query: 307 TLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQIISDCVRS 366
                G + T R    V    N+P                            ++   +RS
Sbjct: 550 RYS--GLTNTNRRKHSVI--ANIP------------------------GSDALLGHEMRS 581

Query: 367 CVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQVTK 426
                EG   V  D + +E    A  A        +        T  A++++ A  +   
Sbjct: 582 LFTVPEGFWQVGIDGSNLEGFCAANAAFPFDNGAYYRGLSGDPHTENAKAYSKAAGRTVS 641

Query: 427 DQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDAENFCRWMQ 486
             R+ GK +   + Y   A     M     L ++        N+  +     +    W++
Sbjct: 642 --RSEGKGITYGVLYGAQAAKVSSM-----LGISKDQAQNVINAFWDTNYGLKGCKEWLE 694

Query: 487 ENHPEHAIEDLFIGTACERVKKA 509
           +       + +      +   ++
Sbjct: 695 KYWESTGKKYILGIDKRKIWTRS 717



 Score = 37.0 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 44/181 (24%), Gaps = 32/181 (17%)

Query: 71  HNS-YFERTVLKACFN----------LDIPIHRWICTLVLARSNGLPSAL--KAVGEALK 117
            N   F+                   ++    R   TL ++R       L      +   
Sbjct: 88  QNLEGFDMLAFSHILGTKYEKIPVEKINGKEIRVFDTLSMSRGLYPDRPLPRGCPAKVKN 147

Query: 118 LSSQKMEEG--KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV-TREIFKR 174
               K +      L A    G          +         + +    DV +   +    
Sbjct: 148 PQGGKAKSIGPHSLEAW---GVKVANKKVAIEDWKGLPLWKYVDRVWEDVIINELQWNAL 204

Query: 175 LEPL-------------SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQE 221
           ++ +                     +L Q   ++G       A  L   +D    ++++E
Sbjct: 205 IKEMQDGKDKGVDWKMALKHNLLADHLMQVQEEQGVVFREDKALELVDKIDQMMKEIEEE 264

Query: 222 L 222
           +
Sbjct: 265 V 265


>gi|254882838|ref|ZP_05255548.1| DNA polymerase III alpha subunit [Bacteroides sp. 4_3_47FAA]
 gi|319643401|ref|ZP_07998027.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_40A]
 gi|254835631|gb|EET15940.1| DNA polymerase III alpha subunit [Bacteroides sp. 4_3_47FAA]
 gi|317385030|gb|EFV65983.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_40A]
          Length = 1265

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 7/92 (7%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  +++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 767 YDIPIMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 822

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 823 KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYA 854


>gi|163786987|ref|ZP_02181434.1| hypothetical protein FBALC1_00572 [Flavobacteriales bacterium
           ALC-1]
 gi|159876875|gb|EDP70932.1| hypothetical protein FBALC1_00572 [Flavobacteriales bacterium
           ALC-1]
          Length = 237

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 56/227 (24%), Gaps = 63/227 (27%)

Query: 2   ATLFIDFET------RSPIDLTKCGI----------------------CKYAEDVCVILF 33
             LF+D ET       S +D TK  +                        +AE   +I  
Sbjct: 9   NILFLDIETVPETENFSDLDTTKQELWSAKSRYQRKEEFTAEEFYDRAGIWAEFGKIICI 68

Query: 34  AFGF----DDHPVELWDCVHDPV--MPQVLKEAL----ENTDVTIVAHNSY-FERTVLKA 82
           + G+     D         +     + +  K  L     +    + AHN   F+   +  
Sbjct: 69  SVGYFKMEGDIRTFRVTSFYGDEIKILKDFKNLLISHFSSNKHLLCAHNGKEFDFPYIAR 128

Query: 83  CF---NLDIPIHRWICTLVLARSNGLPS-------ALKAVGEALKLSSQKMEEGKELIAR 132
                N+++P               L          L  +        +     K L   
Sbjct: 129 RMIIHNIELP-----------YKLNLFGKKPWEVPHLDTLELWKFGDYKTYTSLKLLTNV 177

Query: 133 FCKGE---THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
                     +     +             YC+ D     +IF RL 
Sbjct: 178 LGIPSPKDDIDGSEVYSVYYKNNDIDRIITYCEKDTIAVAQIFLRLR 224


>gi|15892619|ref|NP_360333.1| ribonuclease D [Rickettsia conorii str. Malish 7]
 gi|15619787|gb|AAL03234.1| ribonuclease D [Rickettsia conorii str. Malish 7]
          Length = 281

 Score = 38.2 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 43/172 (25%), Gaps = 36/172 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E             +Y     + +     +++   +    +      +  + L +
Sbjct: 23  LSIDTE----------FERRYTYYAQLSIIQVKAEEYCGIIDALSNLD--LNIFNKLLAD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEAL-KLSS 120
            ++T + H    +  +    F             + A   G    L    +   L  ++ 
Sbjct: 71  NNITKIFHAPREDLEIFYNLF--KTLPANVFDIQIAANICGFGKQLSYDDLCYKLIGITI 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            K  +    + R                           Y   DV    +I+
Sbjct: 129 DKTHQKSNWLKRPITS-------------------DMLNYAMLDVEYLYKIY 161


>gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
 gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
          Length = 1464

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 29/119 (24%), Gaps = 11/119 (9%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPSA 108
            + +  +   E     +VAHN+ F+   +        +P      I T            
Sbjct: 493 QVLKEFQAFCE--GTVLVAHNATFDVGFMNANYERHGLPKITQPVIDT------LEFARN 544

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L    +   L       G  L          E          ++     G     D+ +
Sbjct: 545 LYPDFKRHGLGPLTKRFGVGLEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNI 603


>gi|319944001|ref|ZP_08018281.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia
           mirabilis ATCC 51599]
 gi|319742762|gb|EFV95169.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia
           mirabilis ATCC 51599]
          Length = 238

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 14/128 (10%)

Query: 37  FDDHPVEL----WDCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL---KACFNLD 87
            D+    +    WD + D      + +   +      I+ HN+ F+   L    A     
Sbjct: 53  VDEGAAAVHGMTWDDLRDKPTFAQIVDQFLDFCRGAEIIIHNASFDTGFLDAELARLGRG 112

Query: 88  I---PIHRWICTLVLA--RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECL 142
                +     +L +A  R  G  + L A+ E L + ++       L+      E +  +
Sbjct: 113 TFASHVACVTDSLAMARERYPGKRNNLDALCERLMVPNKHRTLHGALLDSELLAEVYLGM 172

Query: 143 YDRNKPNH 150
                   
Sbjct: 173 TRGQGSFD 180


>gi|289811845|ref|ZP_06542474.1| hypothetical protein Salmonellaentericaenterica_49102 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 24

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 4/18 (22%), Positives = 8/18 (44%)

Query: 602 VQAVSRDILAEGMMNATK 619
           +Q  + DI+   M+    
Sbjct: 1   MQGTAADIIKRAMIAVDA 18


>gi|118395219|ref|XP_001029962.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
 gi|89284244|gb|EAR82299.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
          Length = 1087

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 40/176 (22%), Gaps = 29/176 (16%)

Query: 3    TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVH-DPVMPQVLKEAL 61
             + ID E  +     K           +             + D ++    +   LK   
Sbjct: 896  IIGIDLEYWTDNKDQKLSF--------ICTLQLSTLSSN-FVIDILNLSKSVSVHLKSIF 946

Query: 62   ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
            E+     V H    +  +LK   N ++       T                 +A    ++
Sbjct: 947  ESPKFVKVFHGGETDLKLLKKDLNFNL--VNIFDT----------------AKAYLKQNK 988

Query: 122  KMEEGKELIARFCKGETHECLYDRNKPNHREAWRL-FGEYCKGDVTVTREIFKRLE 176
                             +     +               Y   D  +T  +F  ++
Sbjct: 989  GAGSVSLSSLSQQYLNYNVDKQYQTSDWRIRPLPKPMLNYAMYDSFITLILFFVMK 1044


>gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
 gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
          Length = 1464

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 29/119 (24%), Gaps = 11/119 (9%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVL-KACFNLDIPIH--RWICTLVLARSNGLPSA 108
            + +  +   E     +VAHN+ F+   +        +P      I T            
Sbjct: 493 QVLKEFQAFCE--GTVLVAHNATFDVGFMNANYERHGLPKITQPVIDT------LEFARN 544

Query: 109 LKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTV 167
           L    +   L       G  L          E          ++     G     D+ +
Sbjct: 545 LYPDFKRHGLGPLTKRFGVGLEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNI 603


>gi|167765014|ref|ZP_02437135.1| hypothetical protein BACSTE_03408 [Bacteroides stercoris ATCC
           43183]
 gi|167697683|gb|EDS14262.1| hypothetical protein BACSTE_03408 [Bacteroides stercoris ATCC
           43183]
          Length = 1274

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 7/92 (7%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  +++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 776 YDIPIMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 831

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F  G        +        W  F  Y 
Sbjct: 832 KPKFIAGGQKNGHDAKVLEKIWADWEKFASYA 863


>gi|156936857|ref|YP_001434653.1| DNA polymerase II [Ignicoccus hospitalis KIN4/I]
 gi|156565841|gb|ABU81246.1| replicative DNA polymerase I [Ignicoccus hospitalis KIN4/I]
          Length = 786

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 55/203 (27%), Gaps = 42/203 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVL---- 57
            TL  D E        K G  +   D  +I  A         +   +      + L    
Sbjct: 173 KTLAFDIEVY-----NKSGTPRPERDP-IISIALA---SEGSVVSKLSQDKNDKDLIVWF 223

Query: 58  -KEALENTDVTIVAHNSY-FERTVL---KACFNLDIPIHR---WICTLVLARSNGLPSAL 109
            KE LE     +V +NS  F+   L        + + + R    I T             
Sbjct: 224 KKEMLERDPDVVVGYNSNSFDWPYLIERSKVVGVRLDVGRKVGVIPT-------TGAYGH 276

Query: 110 KAVGEALKLSSQ---------KMEEGKELIARFCKGETHECLYDR-----NKPNHREAWR 155
            +V   L +            K++  + +   F   +  E                +   
Sbjct: 277 VSVPGRLNVDVYDFAKEVYEVKVKTLENVADYFNVMKKDERPLIPHHLIYQYWEDPQKRD 336

Query: 156 LFGEYCKGDVTVTREIFKRLEPL 178
           +  +Y + D   T  + +   P 
Sbjct: 337 VLRKYNEADALSTLMLAELFIPF 359


>gi|149236109|ref|XP_001523932.1| DNA polymerase gamma [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452308|gb|EDK46564.1| DNA polymerase gamma [Lodderomyces elongisporus NRRL YB-4239]
          Length = 975

 Score = 38.2 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 584 TRQLTREYTYGGKLTENIVQAVSRD---ILAEGM---MNATKAGYDIVLTVHDEIVCETP 637
           T++   + TY        +Q+   D   +L   M   +        + +TVHDE+     
Sbjct: 786 TKRNLNKNTYMTSRVNWTIQSSGVDYLHLLIVSMDYLIERYGIDARLAITVHDELRYLVK 845

Query: 638 DTDEFNASMLYHL 650
           + D++ AS+L  +
Sbjct: 846 EEDKYMASLLLQV 858


>gi|317503779|ref|ZP_07961791.1| DNA-directed DNA polymerase III alpha subunit [Prevotella salivae
           DSM 15606]
 gi|315665076|gb|EFV04731.1| DNA-directed DNA polymerase III alpha subunit [Prevotella salivae
           DSM 15606]
          Length = 1235

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/91 (9%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELI 130
           ++   ++      + + +   +    ++L+R     +  ++      +  +K      + 
Sbjct: 737 YDIPCMEKYLKDTYGITVYQEQV---MLLSRQLANFTRGESDALRKAMGKKKKAIVDAMK 793

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
            +F K  T      +        W  F  Y 
Sbjct: 794 PKFIKQGTENGHDPKILEKIWGDWEKFASYA 824


>gi|301161727|emb|CBW21267.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis
           638R]
          Length = 1294

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 796 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 851

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 852 KPKFVEGGRKNGHDPKVLEKIWADWEKFASYA 883


>gi|283798273|ref|ZP_06347426.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074053|gb|EFE11417.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 244

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 35/133 (26%), Gaps = 50/133 (37%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVI-LFAFGFD----------DHPVELWDCVHDP 51
            +F D ET              AE   +I L A   +          D            
Sbjct: 14  VVFFDTETTGLE----------AESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGE 63

Query: 52  VMPQVLKEA-------LENTDV------------------TIVAHNSYFERTV----LKA 82
            +PQ + E        LEN  +                   +VAHN+ F+       L+ 
Sbjct: 64  RIPQKIVELTGITDEQLENEGITETEAAARFTELIGGGRVLLVAHNAQFDLLFTAEMLRR 123

Query: 83  CFNLDIPIHRWIC 95
             N    + +   
Sbjct: 124 HGNGGPEVLKAAD 136


>gi|53712001|ref|YP_097993.1| DNA polymerase III subunit alpha [Bacteroides fragilis YCH46]
 gi|52214866|dbj|BAD47459.1| DNA polymerase III alpha subunit [Bacteroides fragilis YCH46]
          Length = 1294

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 796 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 851

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 852 KPKFVEGGRKNGHDPKVLEKIWADWEKFASYA 883


>gi|54310042|ref|YP_131062.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
 gi|46914481|emb|CAG21260.1| Putative DNA polymerase III, epsilon subunit [Photobacterium
           profundum SS9]
          Length = 246

 Score = 38.2 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 11/90 (12%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWICTLVLARSN 103
             +     E +      +VAHN+ F+   +   F              +   TL +A+  
Sbjct: 84  KEVHDEFLEFI--KGAELVAHNAPFDVGFMDYEFRKLNPNIGKTEDFCKVTDTLAMAKKI 141

Query: 104 GLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                  L  +     + +        L+ 
Sbjct: 142 FPGKRNNLDILCSRYGIDNSHRTLHGALLD 171


>gi|332291705|ref|YP_004430314.1| 3'-5' exonuclease, PolB-like protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169791|gb|AEE19046.1| 3'-5' exonuclease, PolB-like protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 238

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 56/225 (24%), Gaps = 70/225 (31%)

Query: 3   TLFIDFET------RSPIDLTKCGICK----------------------YAEDVCVILFA 34
            LF+D ET         +D T+  +                        +AE   ++  +
Sbjct: 10  ILFLDIETVPQHASYDDLDETEKFLYADKTKYLRKDEHTPETFYERAGIWAEFGKIVCIS 69

Query: 35  F-----GFDDHPVELWDCVHDPV--MPQVLKEALEN----TDVTIVAHNSY-FERTVLKA 82
                               D    +    K  LE         + AHN   F+   +  
Sbjct: 70  VGYFNASVAGKRFRTTSFAGDDEAILLNDFKTLLETHFNGKHHLLCAHNGKEFDFPYIAR 129

Query: 83  CF---NLDIP-----------IHRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEG 126
                 + +P               I TL L +        +LK + + L + S K    
Sbjct: 130 RMIINGVTLPHKLNLFGKKPWEIPHIDTLDLWKFGDYKHYTSLKLLTKILGIPSPKD--- 186

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
                        +    R      +  +    YC+ D     +I
Sbjct: 187 -----------DIDGSQVRAVYYEEKDIKRIVVYCEKDTVAVAQI 220


>gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1463

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 41/147 (27%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE--LWDCVHDPVM-PQVLKEA 60
           +  D ET         G+ KY + +  I  A   ++  +       ++   + P+ + E 
Sbjct: 449 VVFDIETT--------GLLKYRDAITEIG-AVRVENGEITETYNQLINPERILPEKIVEI 499

Query: 61  -------LENT---------------DVTIVAHNSYFERTVL---KACFNLDIPIHRWIC 95
                  L +                D  IV  N+ F+   +        L      ++ 
Sbjct: 500 TGITDAMLADKPKIDEVLPGFLDFCGDSLIVGQNTDFDVGFIRENAKRLGLKFDPI-YLD 558

Query: 96  TLVLARSNGLPS---ALKAVGEALKLS 119
           TL +AR+        +L  +   L + 
Sbjct: 559 TLPMARALFDDMGKFSLDKIARKLDIP 585


>gi|331091091|ref|ZP_08339933.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405313|gb|EGG84849.1| hypothetical protein HMPREF9477_00576 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 236

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 42/154 (27%), Gaps = 49/154 (31%)

Query: 1   MA--TLFIDFETRSPIDLTKCGICKYAEDVCVILF-AFGFDDHPVELWD----------- 46
           M    +  D ET    +          E   +I   A   ++  V   D           
Sbjct: 1   MRKTYISFDLETTGLSE----------EKDYIIEIGAVKVNNGKV--VDRFARFLKPPIS 48

Query: 47  ---------------CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKAC---FNLD 87
                            +     + +K+ ++      ++ HN  F+   +K     F L 
Sbjct: 49  ISNTITNLTGITDDMVKNAGDTQETIKDFIKFCDGYFLLGHNIMFDYKFMKTYAARFGLH 108

Query: 88  IPIHRWICTLVLARSNG---LPSALKAVGEALKL 118
                   TL +AR         +L+++     +
Sbjct: 109 FEKEGI-DTLKIARKVHKNLESKSLESLCTYYNI 141


>gi|260770659|ref|ZP_05879590.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|260614385|gb|EEX39573.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
 gi|315178389|gb|ADT85303.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218]
          Length = 212

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 42/160 (26%), Gaps = 55/160 (34%)

Query: 4   LFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVEL------- 44
           + +D ET S       L      K   +         V L A    D   V +       
Sbjct: 31  VSLDCETTSLDPNRAELVTIAATKIIGNRILTSQPFEVRLRAPQSLDSGSVRIHRIRHQD 90

Query: 45  -WDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIP---------- 89
             D + +      L   +   +  +V ++  +++ +L    +      +P          
Sbjct: 91  LVDGISEQDALTRLIAFI--GNRPLVGYHIRYDKKILDIACRRHLGFPLPNSLIEVSHIY 148

Query: 90  --------IHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
                    + +              +L A+   L L  Q
Sbjct: 149 HDKLEKHLPNAYFD-----------LSLDAICRHLDLPLQ 177


>gi|153840553|ref|ZP_01993220.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149745784|gb|EDM56914.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 229

 Score = 38.2 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 11/98 (11%)

Query: 43  ELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF-------NLDIPIHRWIC 95
            L D      + Q   + +      +VAHN+ F+   +   F              +   
Sbjct: 66  FLVDKPEYASIHQEFLDFI--KGAELVAHNAPFDTGFMDYEFEKLDPIIGKTDDYCKVTD 123

Query: 96  TLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
           TL +A+         L  + E   + +        L+ 
Sbjct: 124 TLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLD 161


>gi|291287138|ref|YP_003503954.1| DEAD/DEAH box helicase domain protein [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884298|gb|ADD67998.1| DEAD/DEAH box helicase domain protein [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 938

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 45/184 (24%), Gaps = 37/184 (20%)

Query: 2   ATLFIDFET-RSPIDLTKCGICKYAEDVCVILFA----FGFDDHPVELWDCVHDPVMPQV 56
             L  D ET RS  D+          +   +  +    + F++         +     + 
Sbjct: 758 DVLVYDIETKRSADDVGG------WNNAHKMGISVAVVYSFEND----VYETYTEEQAED 807

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS---ALKAVG 113
               LE     +  +N  F+  V+      D          +LA          +L  + 
Sbjct: 808 FIVRLEGAKCIMGFNNIGFDNKVITGYRVPDFNKTMVFD--ILADVRAKTGRRFSLDNMA 865

Query: 114 EALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFK 173
                                            +           EYCK DV VT+ +F 
Sbjct: 866 -----------------GTTIGAAKTADGLQALQWYKEGKIDQIIEYCKMDVEVTKNLFL 908

Query: 174 RLEP 177
               
Sbjct: 909 HGAE 912


>gi|213962688|ref|ZP_03390949.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
           Capno]
 gi|213954683|gb|EEB66004.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
           Capno]
          Length = 442

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
             + P   ++ K  +E      IV HN+ F+  +L+        +  I   +CT+ L++ 
Sbjct: 61  LRNAPKFYEIAKRIVEITEGCIIVGHNAAFDYRILQTEFRRLGYEY-IKTTLCTVELSQQ 119

Query: 103 NGL---PSALKAVGEALKLSS 120
                   +L  +  +L +  
Sbjct: 120 LIPDKESYSLGKLVRSLGIPM 140


>gi|22797875|emb|CAD42683.1| putative DNA polymerase B [uncultured crenarchaeote]
          Length = 789

 Score = 38.2 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 22/128 (17%)

Query: 45  WDCVHDPVMPQVLKEAL-ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSN 103
            D VH   + + L   L +             +   LK    + I + R           
Sbjct: 319 IDPVHKKPISKELVPILVKKDSFIKRG--IQADPVSLKH--GIHIDLFRTF--------- 365

Query: 104 GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
               +++    + K S   +          C+   +E   D ++           EYC  
Sbjct: 366 -QNKSVQNYAFSHKYSEFTL-------NAICEALLNESKIDFDESIGDLPLEKLAEYCLK 417

Query: 164 DVTVTREI 171
           D  +T  +
Sbjct: 418 DADLTFRL 425


>gi|253563964|ref|ZP_04841421.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_2_5]
 gi|265765339|ref|ZP_06093614.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_16]
 gi|251947740|gb|EES88022.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_2_5]
 gi|263254723|gb|EEZ26157.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_16]
          Length = 1273

 Score = 38.2 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 775 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 830

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 831 KPKFVEGGRKNGHDPKVLEKIWADWEKFASYA 862


>gi|300858788|ref|YP_003783771.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686242|gb|ADK29164.1| hypothetical protein cpfrc_01371 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206493|gb|ADL10835.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis C231]
 gi|302331048|gb|ADL21242.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276735|gb|ADO26634.1| Putative DNA polymerase III epsilon subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 453

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 70  AHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNG---LPSALKAVGEALKLS 119
           AHN+ F+ T         NL +P   + C+L L+R+         L  V + L + 
Sbjct: 190 AHNAQFDMTAFFRAAQAENLVLPTVAFGCSLALSRAANLGTPNHKLPTVAKHLNVD 245


>gi|299132474|ref|ZP_07025669.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
 gi|298592611|gb|EFI52811.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
          Length = 297

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 61  LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLV---LARSNGLPSALKAVGEALK 117
                  ++AHN+ F+R  L+    +      W C++     A      + L  +  AL 
Sbjct: 121 FAAPAAVVIAHNAAFDRRFLERFSPV-FSTKPWACSMSEIDWAAEGFEGAKLSYLAMALG 179

Query: 118 LSSQ 121
               
Sbjct: 180 FFYD 183


>gi|300024532|ref|YP_003757143.1| exonuclease RNase T and DNA polymerase III [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526353|gb|ADJ24822.1| Exonuclease RNase T and DNA polymerase III [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 225

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 57  LKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSN-GLPSALKAV 112
           L  A  + D  IV+HN+ F+R  +++ F      +    W CT+   R+  G  ++L A 
Sbjct: 108 LFPAFGSAD-LIVSHNTDFDRPFVESEFAGAGRSLRGKSWHCTMQAERARGGGSASLDAS 166

Query: 113 GEALKLSSQKMEEG 126
            + L +  Q    G
Sbjct: 167 IDRLGIQRQSGRHG 180


>gi|296126676|ref|YP_003633928.1| exonuclease [Brachyspira murdochii DSM 12563]
 gi|296018492|gb|ADG71729.1| exonuclease [Brachyspira murdochii DSM 12563]
          Length = 287

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 45/171 (26%), Gaps = 35/171 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             +F+D ET         GI     DV VI     +D   ++++    +        + +
Sbjct: 88  KIVFLDIETT--------GIKPSKADVTVIG---CYDGKEMKVFVHGRNEN---EFLDYI 133

Query: 62  ENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWI------CTLVLARSNGLPSALKAVGE 114
           +N  +     N   F+   L+  F   I   +                 G    LK + +
Sbjct: 134 KNYSIVCTF-NGSCFDIPFLERYFATTIKCAQIDLRFVLKD-------LGYTGGLKKIEQ 185

Query: 115 ALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
            + LS     EG                          A      Y   D 
Sbjct: 186 DVGLSRGDDMEG------VTGYTAVLLWNYYQDTKDETAIDSLIHYNLLDT 230


>gi|326674641|ref|XP_003200176.1| PREDICTED: plectin-like [Danio rerio]
          Length = 4530

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 35/324 (10%), Positives = 91/324 (28%), Gaps = 27/324 (8%)

Query: 113  GEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
             E + L+SQ ++   +   R    E         +       +   +  K       +  
Sbjct: 1352 SELMTLTSQYIKFITDTQRRLEDEEKAAEKLKAEERKKMAEMQAELDKQKQLAEAHAKAI 1411

Query: 173  KRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQ-IVDVERTKLDQELESLTYGLVS 231
             + E  + + + +   + +  +    VD        Q  +   +   +Q+++S +  +  
Sbjct: 1412 AKAEKEAQELKLMMQEEVSKREF-VAVDAERQKQNIQLELHELKNLSEQQIKSKSQQVEE 1470

Query: 232  SSRCLEKLKTWLFL-ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLK 290
            + +   K++  + +    L      ++T Q  L   +    +A ++       +      
Sbjct: 1471 ALQSRVKIEEEIRIIRLQLETTMKQKSTAQEELMQLRSKAAEAERLRKAAQEEA------ 1524

Query: 291  LNTLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSI 350
               L + +N + +                       + L   S + +E  +        +
Sbjct: 1525 -EKLRKQVNEETQK-----------------KRIAEEELKLKSEAEKEAARQKQKALDDL 1566

Query: 351  TSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYV 410
                  +      ++   I  E +  +  D A   A          +  K  +  E L  
Sbjct: 1567 DKLKMEVDEAERHMKQAEIEKERQIKLAQDAAQKSASAELQSKRMSFVEKTSKLEESLRE 1626

Query: 411  TTYARSFNVAPAQVTKDQRAIGKV 434
                       A+  K Q+     
Sbjct: 1627 KHGTVIQLQEEAERLKKQQEEADK 1650


>gi|60680202|ref|YP_210346.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis
           NCTC 9343]
 gi|60491636|emb|CAH06388.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis
           NCTC 9343]
          Length = 1264

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 766 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 821

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 822 KPKFVEGGRKNGHDPKVLEKIWADWEKFASYA 853


>gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
 gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
          Length = 1464

 Score = 37.8 bits (86), Expect = 5.5,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 51/192 (26%), Gaps = 43/192 (22%)

Query: 7   DFE----TRSPIDLTKCGICKYAEDVCVILFAFG--FDDHPVELWD-------------- 46
           D E    T    D+   G+     D  +I  A    +  + VE +D              
Sbjct: 418 DIELNEATYVVFDVETTGLSAVNND--LIQIAASKMYKGNIVEQFDEFINPGHHLSAFTT 475

Query: 47  ---------CVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVL-KACFNLDIPIH--R 92
                      +   + + + +  +N   D  +VAHN+ F+   +        +PI    
Sbjct: 476 ELTGITDNHVRNAKPI-EEVLQMFQNFCQDTVLVAHNATFDVGFMNANYERHGMPIITQP 534

Query: 93  WICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHRE 152
            I TL  AR+           +   L          L          E          +E
Sbjct: 535 VIDTLEFARNLYPEY------KRHGLGPLTKRFQVSLEHHHMANYDAEATGRLLFIFLKE 588

Query: 153 AWRLFGEYCKGD 164
           A          D
Sbjct: 589 ARENHSLANMMD 600


>gi|255007521|ref|ZP_05279647.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12]
 gi|313145215|ref|ZP_07807408.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12]
 gi|313133982|gb|EFR51342.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12]
          Length = 1264

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R         ++      +  +  ++   +
Sbjct: 766 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLADFTRG-ESDALRKAMGKKLRDKLDHM 821

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 822 KPKFVEGGRKNGHDPKVLEKIWADWEKFASYA 853


>gi|46255199|ref|YP_006111.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27]
 gi|46198048|gb|AAS82458.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27]
          Length = 1649

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 31/134 (23%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILF--------------------AFGFDDHPVE 43
           + +D E  S        +   A D    +F                       ++++  +
Sbjct: 9   VALDLEATSTDPSEAEVLEVAAVDGEGRVFHRYLATQRPLPPDHEVFQLTGIPYEEYEAK 68

Query: 44  LWDCVHDPVMPQVLKEALENTDVTIVAHN-SYFERTVLKACF---NLDIPIHRWICTLVL 99
                      + L   L      ++ HN   ++  +L+       L       + TL L
Sbjct: 69  KV---APKEALEELLAFL--GGRPLLGHNLLRYDLPLLQRHLEEAGLPRWQGEALDTLRL 123

Query: 100 ARSNG--LPSALKA 111
           A       P  L+ 
Sbjct: 124 AHLLFPTPPGGLEG 137


>gi|83950653|ref|ZP_00959386.1| hypothetical protein ISM_06125 [Roseovarius nubinhibens ISM]
 gi|83838552|gb|EAP77848.1| hypothetical protein ISM_06125 [Roseovarius nubinhibens ISM]
          Length = 446

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 607 RDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYH 649
            +     M++  +A     L VHD ++     +D   A  +  
Sbjct: 370 AECFLAAMLSLHEAKSIPSLPVHDSLI--VRQSDVHIAKEILE 410


>gi|315500766|ref|YP_004089567.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis
           excentricus CB 48]
 gi|315418778|gb|ADU15416.1| Exonuclease RNase T and DNA polymerase III [Asticcacaulis
           excentricus CB 48]
          Length = 324

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 29/102 (28%), Gaps = 38/102 (37%)

Query: 6   IDFETRSPIDLTKCGICKYAEDV--CVILFAFGFDD---------------HPVELWD-- 46
           ID ET              AED    +   AF FDD                P       
Sbjct: 75  IDTETTGLNK---------AEDAVIEIGAIAFRFDDRGVVGDLIEVYGALQDPGFPIPAN 125

Query: 47  ----------CVHDPVMPQVLKEALENTDVTIVAHNSYFERT 78
                      V    +   + EAL      I+AHN+ F+R 
Sbjct: 126 ITELTGIDDAMVKGQSIDFHVLEALIKPADLIIAHNAAFDRP 167


>gi|85713113|ref|ZP_01044147.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145]
 gi|85693061|gb|EAQ31025.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145]
          Length = 236

 Score = 37.8 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 46/153 (30%), Gaps = 39/153 (25%)

Query: 1   MATLFIDFETRS----------------PIDLTKCG--ICKYAEDVCVILFAFGFDDHPV 42
           M  + +D ET                   ID    G     Y     V+      +D  +
Sbjct: 1   MRQIVLDTETTGINPDDGHRIIEIGCVELIDRKPTGNHFHVYINPERVV------EDEAI 54

Query: 43  ELWDCVH----DPVMPQVLKEALEN--TDVTIVAHNSYFE-------RTVLKACFNLDIP 89
            +    +    D  +   + +A  +      +V HN+ F+          L   +     
Sbjct: 55  AVHGITNEYLADKPVFAQVVDAFIDFIKGSQLVIHNAPFDVGHMDAEFKRLGKMYGKTYD 114

Query: 90  IHRWICTLVLARSNGLPS--ALKAVGEALKLSS 120
               + +L LAR        +L A+ +A  + +
Sbjct: 115 YCDVLDSLQLAREKRPGQRNSLDALCKAFHVDN 147


>gi|255534253|ref|YP_003094624.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
           3519-10]
 gi|255340449|gb|ACU06562.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
           3519-10]
          Length = 407

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 35/141 (24%)

Query: 11  RSPIDLTKCGICKYAEDVCVILFA-FGFDDHPV--ELWDCVHDP---------------- 51
            S ID+   G     E   +I  A + +D H +  +    V+                  
Sbjct: 2   YSVIDIESNGAGFRKES--IIEIAVYKYDGHEIVDQFISLVNPESEITPFVQKLTKISPK 59

Query: 52  ------VMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
                   P++ +  +E   +  +V HN  F+  +L+        D  I+    T+ LA+
Sbjct: 60  MVKTAPKFPEIARRVIEITRNTILVGHNIDFDYRMLRQEFKRLGYDFTINTL-DTIPLAK 118

Query: 102 SNGL---PSALKAVGEALKLS 119
                    +L  + ++L + 
Sbjct: 119 KLIPEAESYSLGKLVKSLGIP 139


>gi|212711204|ref|ZP_03319332.1| hypothetical protein PROVALCAL_02276 [Providencia alcalifaciens DSM
           30120]
 gi|212686372|gb|EEB45900.1| hypothetical protein PROVALCAL_02276 [Providencia alcalifaciens DSM
           30120]
          Length = 783

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 15/102 (14%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPV-----ELWDCVHDPVMPQV 56
             + +D ET    +L   G+    ++   ++F  G +  P       L      P + + 
Sbjct: 153 RAVSLDIETSQHGELYSIGLAGCGDN---VVFMLGPEQGPALNNEHRLVYANSRPQLLEQ 209

Query: 57  LKEALE--NTDVTIVAHN-SYFERTVLKAC---FNLDIPIHR 92
           L + ++  + D   +  N   F+  VL+     + + + + R
Sbjct: 210 LNDWIQQYDPDAI-IGWNLIQFDLQVLQKHAERYGIPLLLGR 250


>gi|148227908|ref|NP_001086424.1| ninein-like [Xenopus laevis]
 gi|52630453|gb|AAT67990.2| ninein-like protein [Xenopus laevis]
          Length = 1836

 Score = 37.8 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 31/134 (23%), Gaps = 2/134 (1%)

Query: 113  GEALKL-SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            G+ L L S  K    K  +  F K +                      YC  DV     +
Sbjct: 929  GQYLNLNSDDKDHSNKTEVVHFIKQDELSET-TGQLTETPNPQCAQILYCLKDVDEKLSL 987

Query: 172  FKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVS 231
             KR E  +  +        +        D+     L +       +  Q    L      
Sbjct: 988  LKRTEESAEVKLHKMECVVSSLRAQLLDDIKETEALLKKHGYLEEEKAQLSRQLEAMEEE 1047

Query: 232  SSRCLEKLKTWLFL 245
                  K    +  
Sbjct: 1048 RLLSEAKQNQLMVE 1061


>gi|289804042|ref|ZP_06534671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 43

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 3/41 (7%)

Query: 634 CETPDTDEFNASM-LYHLMTSNPSWAKGLPLKAEGYESKRY 673
            E    D    +  ++ LM +       +PL  E    + +
Sbjct: 1   FEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 39


>gi|78048167|ref|YP_364342.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78036597|emb|CAJ24288.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 363

 Score = 37.8 bits (86), Expect = 5.8,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 49/204 (24%), Gaps = 40/204 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L      D  + +   +    M   LK
Sbjct: 23  IGLDTEFIRERTYW---------------PQLALVQMAIGDEILLIDPLIPG--MNAALK 65

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L   D+  V H++  +    K              T +                A   
Sbjct: 66  EWLTAPDIVKVMHSASEDLVTFKCACG--ALPRPLFDTQI---------------AAALA 108

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                   ++L+         +     +      +     EY   DV     I   L   
Sbjct: 109 GVGGGMGYQKLVQEVTGTLLTKGETRSDWMRRPLSPAQL-EYAADDVRYLFAIHDALTRR 167

Query: 179 SSKEQELWYLDQTINDRGYCVDVA 202
            +++  L +L +        V+  
Sbjct: 168 LAEQGRLEWLAEDAERLLATVEHD 191


>gi|326508692|dbj|BAJ95868.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 562

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 49/191 (25%), Gaps = 42/191 (21%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHD-PVMPQVL--- 57
             + +D E        K    K +    V +      D    ++D +      P+ L   
Sbjct: 376 KIIGVDCE-------WKPNYEKGSRPNKVAIIQIA-SDKKAFIFDLIKLYEDDPKALDCC 427

Query: 58  -KEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEAL 116
            +  + ++++  + +N   +   L   +   +    +   ++                  
Sbjct: 428 FRRIMCSSNILKLGYNLQCDLHQLTQSYGELLCFQSYE--ML------------------ 467

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRL------FGEYCKGDVTVTRE 170
            L  QK+   KE                 NK      W          EY   D  V   
Sbjct: 468 -LDIQKL--FKETTGGLSGLSKKILGAGLNKTRRNSDWEQRPLSQNQKEYAALDAAVLVH 524

Query: 171 IFKRLEPLSSK 181
           IF  +      
Sbjct: 525 IFHHVRGQPQF 535


>gi|324541911|gb|ADY49630.1| DNA polymerase I [Ascaris suum]
          Length = 97

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 3/43 (6%)

Query: 76  ERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL-KAVGEALK 117
           + +VL     L +P       ++LA      +   + V     
Sbjct: 39  DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG 79


>gi|67459201|ref|YP_246825.1| ribonuclease D [Rickettsia felis URRWXCal2]
 gi|67004734|gb|AAY61660.1| Ribonuclease D [Rickettsia felis URRWXCal2]
          Length = 281

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 43/172 (25%), Gaps = 36/172 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E             +Y     + +     +++   +    +      +  + L +
Sbjct: 23  LSIDTE----------FERRYTYYAQLSIIQVKAEEYCGIIDALSNLD--LNIFNKLLAD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEAL-KLSS 120
            ++T + H    +  +    F             + A   G    L    +   L  ++ 
Sbjct: 71  NNITKIFHAPREDLEIFYNLF--KTLPSNVFDIQIAANICGFGKQLSYDDLCYKLIGITI 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            K  +    + R                           Y   DV    +I+
Sbjct: 129 DKTHQKSNWLKRPITS-------------------DMLNYAMLDVEYLYKIY 161


>gi|34581576|ref|ZP_00143056.1| ribonuclease D [Rickettsia sibirica 246]
 gi|28262961|gb|EAA26465.1| ribonuclease D [Rickettsia sibirica 246]
          Length = 281

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 43/172 (25%), Gaps = 36/172 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E             +Y     + +     +++   +    +      +  + L +
Sbjct: 23  LSIDTE----------FERRYTYYAQLSIIQVKAEEYCGIIDALSNLD--LNIFNKLLAD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEAL-KLSS 120
            ++T + H    +  +    F             + A   G    L    +   L  ++ 
Sbjct: 71  NNITKIFHAPREDLEIFYNLF--KTLPANVFDIQIAANICGFGKQLSYDDLCYKLIGITI 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            K  +    + R                           Y   DV    +I+
Sbjct: 129 DKTHQKSNWLKRPITS-------------------DMLNYAMLDVEYLYKIY 161


>gi|229149839|ref|ZP_04278067.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1550]
 gi|228633520|gb|EEK90121.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
           m1550]
          Length = 934

 Score = 37.8 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHN 147


>gi|319952129|ref|YP_004163396.1| DNA polymerase iii, epsilon subunit [Cellulophaga algicola DSM
           14237]
 gi|319420789|gb|ADV47898.1| DNA polymerase III, epsilon subunit [Cellulophaga algicola DSM
           14237]
          Length = 457

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 26/142 (18%)

Query: 1   MATLFIDFETRS----PIDLTKCGICKYAEDVCVILFAFGFDDH-PVELW---------- 45
           M T+ ID ET         +T+  I KY     +  F    +    +  +          
Sbjct: 1   MYTI-IDIETTGNGIQGNKITEISIFKYDGYDVIEEFTTLINPEAEIPYFITGLTGIDNT 59

Query: 46  ---DCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACFN-LDIP-IHRWICTLVLA 100
              +      +   + +  E  +   VAHN  F+  ++K  F  + +  I + +CT+ L+
Sbjct: 60  MVRNAPKFSEVADQILKITE--ETIFVAHNVSFDYNIIKHEFKAIGVDFIRQKLCTVRLS 117

Query: 101 RSNGL---PSALKAVGEALKLS 119
           R         +L  +  ALK+ 
Sbjct: 118 RKLFPGYNSYSLGKLCTALKIP 139


>gi|228964616|ref|ZP_04125724.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228795047|gb|EEM42545.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar sotto str. T04001]
          Length = 365

 Score = 37.8 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 26/145 (17%)

Query: 2   ATLFIDFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDP 51
             + +D ET         D          ED  ++     F +   E+          D 
Sbjct: 4   RYVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFVNPKREIPPFITELTGIDE 63

Query: 52  VMPQVLKEALEN---------TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVL 99
            + +      ++              VAHN +F+   L                I T+ L
Sbjct: 64  SLVKQ-APLFQDVAPMIVELLQGAAFVAHNVHFDWNFLNEELRQAGYTEIHCPKIDTVEL 122

Query: 100 ARSNGL---PSALKAVGEALKLSSQ 121
           A+          L+ + +  +L   
Sbjct: 123 AQILLPTADSYKLRDLAKKHELEHD 147


>gi|261210416|ref|ZP_05924710.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
 gi|260840474|gb|EEX67040.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
          Length = 209

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 49/188 (26%), Gaps = 56/188 (29%)

Query: 3   TLFIDFETRSPID----LTKCGICKYAED-------VCVILFAF-GFDDHPVELWDCVHD 50
            + +D ET S       L      K  ++         V L A    D   V +    H 
Sbjct: 30  YVSLDCETTSLDPKRAELVTIAATKIIDNRILTSQPFEVRLCAPQSLDSGSVRIHKIRHQ 89

Query: 51  P--------VMPQVLKEALENTDVTIVAHNSYFERTVL----KACFNLDIP--------- 89
                         L + +   +  +V ++  +++T+L    +      +P         
Sbjct: 90  DLQDGLSEKEALIQLIDFI--GNRPLVGYHIRYDKTILDIACRKHLGFPLPNRLIEVSQI 147

Query: 90  ---------IHRWICTLVLARSNGLPSALKAVGEALKLS-SQKMEEGKELIARFCKGETH 139
                     + +              +L+A+   L L    K +  ++ IA        
Sbjct: 148 YHDKLEKHLPNAYFD-----------LSLEAICRHLDLPLQDKHDALQDAIAAALVFVRL 196

Query: 140 ECLYDRNK 147
                   
Sbjct: 197 TKGDLPQF 204


>gi|300778928|ref|ZP_07088786.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
 gi|300504438|gb|EFK35578.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
          Length = 1555

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 35/132 (26%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVE------LWDCVHDPVMP-- 54
            L  D ET          +        ++  A+   D                   +P  
Sbjct: 2   YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGNLIENQDYIIKPEGYDIPFN 61

Query: 55  ----------------QVLKEALEN-----TDVTIV-AHNSYFERTVL-----KACFNLD 87
                           + L+E LE        V +V  HN  F+  ++     +     +
Sbjct: 62  AARIHGITTKIANEEGRDLQEILEEFSKVLEKVRVVSGHNVEFDYNIVGAEFYRKNLKDN 121

Query: 88  IPIHRWICTLVL 99
           +       T++L
Sbjct: 122 LQEKPKADTMIL 133


>gi|167747300|ref|ZP_02419427.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662]
 gi|167653278|gb|EDR97407.1| hypothetical protein ANACAC_02014 [Anaerostipes caccae DSM 14662]
          Length = 234

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 9/101 (8%)

Query: 63  NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEAL 116
           +    ++ HN  F+   +K     F           TL  AR          L ++ E  
Sbjct: 80  SEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEGV-DTLRAARLLLRGLESKKLSSLCEHY 138

Query: 117 KLSSQKMEEGKE--LIARFCKGETHECLYDRNKPNHREAWR 155
              +Q      +  L              +  K    E  +
Sbjct: 139 HYVNQAAHRAYDDALATAVVFESMKREFGEDQKVFVPEPLQ 179


>gi|313206972|ref|YP_004046149.1| 3'-5' exonuclease, polb [Riemerella anatipestifer DSM 15868]
 gi|312446288|gb|ADQ82643.1| 3'-5' exonuclease, PolB [Riemerella anatipestifer DSM 15868]
 gi|315024048|gb|EFT37050.1| hypothetical protein RAYM_01500 [Riemerella anatipestifer RA-YM]
 gi|325335591|gb|ADZ11865.1| Predicted 3'-5' exonuclease, PolB-like protein [Riemerella
           anatipestifer RA-GD]
          Length = 232

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 57/222 (25%), Gaps = 53/222 (23%)

Query: 2   ATLFIDFET-----------------RSPIDLTKCGICKYAEDV------------CVIL 32
             LF+D ET                      L +      AED              +I 
Sbjct: 9   RILFLDIETVPQEESWQNLPTEEQNLWDKKTLHQRKEEITAEDFYHQRAGVMAEFGKIIC 68

Query: 33  FAFG-FDDHPVELWDCVHDPV---MPQVLKEALEN---TDVTIVAHNSY-FERTVLKACF 84
            + G  D +               + +       +   T+V + AHN   F+   +   F
Sbjct: 69  ISVGMIDRNETLKIRSFAGDNEKKLLEEFGAIFNSTRLTNVILCAHNGKEFDFPWIARRF 128

Query: 85  NLD--IPIHRWICTLVLARSNGLP----SALKAVGEALKLSSQKMEEGKELIARFCKGE- 137
            ++  IP   +       +  G        L  +        +     + +   F     
Sbjct: 129 LVNGMIPPSPF-------QLFGKKPWEVPHLDTLELWKFGDYKSFISLELMAHIFGVPTP 181

Query: 138 --THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               +           +      +YC+ DV     IF++L  
Sbjct: 182 KDDIDGSMVAEIYYKEKDLPRIIKYCEKDVLTLANIFRKLRQ 223


>gi|297243353|ref|ZP_06927286.1| ribonuclease D [Gardnerella vaginalis AMD]
 gi|296888600|gb|EFH27339.1| ribonuclease D [Gardnerella vaginalis AMD]
          Length = 476

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 45/190 (23%), Gaps = 45/190 (23%)

Query: 65  DVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKM 123
           DV  + H+S  +       F++ +       T + A+  G     L +V E         
Sbjct: 91  DVPWIIHDSMQDLPGF---FDIGLRPRALFDTEIAAKLLGRKRFGLSSVTEYY------- 140

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
                L     K  +      R  P      R +  Y   DV +  E+            
Sbjct: 141 -----LGLTLAKEHSAADWSYRPLP------RDWRNYAALDVELLIEL------------ 177

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWL 243
                      RG            +       K  Q+              +  +   +
Sbjct: 178 -------EEVMRGELKKQGKLSWAEEEFKHLLNKGAQK----KAPHPRPWLKISHISVLM 226

Query: 244 FLETGLHLED 253
               GL +  
Sbjct: 227 HDRVGLVIAK 236


>gi|15604326|ref|NP_220842.1| ribonuclease D (RND) [Rickettsia prowazekii str. Madrid E]
 gi|3861018|emb|CAA14918.1| RIBONUCLEASE D (rnd) [Rickettsia prowazekii]
 gi|292572078|gb|ADE29993.1| Ribonuclease D [Rickettsia prowazekii Rp22]
          Length = 281

 Score = 37.8 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 42/172 (24%), Gaps = 36/172 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E             +Y     + +     + +   +    +      +  + L +
Sbjct: 23  LSIDTE----------FERRYTYYAQLSIIQVKAEGYCGIIDTLSNLD--LNIFNKLLID 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEAL-KLSS 120
            ++T + H    +  +    F             + A   G    L    +   L  ++ 
Sbjct: 71  NNITKIFHAPREDLEIFYNLF--KTLPSNIFDIQIAASICGFGQQLSYDNLCYKLIGITI 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            K  +    + R                           Y   DV    +I+
Sbjct: 129 DKTHQKSNWLKRPITN-------------------DMLNYAILDVEYLYKIY 161


>gi|228914217|ref|ZP_04077833.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845421|gb|EEM90456.1| DnaQ family exonuclease/DinG family helicase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 927

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 26/140 (18%)

Query: 7   DFETRS-----PIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC-----VHDPVMPQV 56
           D ET         D          ED  ++     F +   E+          D  M + 
Sbjct: 2   DLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDESMVKQ 61

Query: 57  LKEALEN---------TDVTIVAHNSYFERTVL---KACFNLDIPIHRWICTLVLARSNG 104
                E+              VAHN +F+   L                + T+ LA+   
Sbjct: 62  -APLFEDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVELAQILL 120

Query: 105 L---PSALKAVGEALKLSSQ 121
                  L+ + +  +L   
Sbjct: 121 PTADSYKLRDLAKQHELEHD 140


>gi|189501071|ref|YP_001960541.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1]
 gi|189496512|gb|ACE05060.1| DNA-directed DNA polymerase [Chlorobium phaeobacteroides BS1]
          Length = 180

 Score = 37.8 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 43/152 (28%), Gaps = 28/152 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELW---------------- 45
             + +D ET     L    + + A    V       ++H   L                 
Sbjct: 12  RVVAVDVETTGLSPLRGDRVIEVAAVAIVNGV---IEEHFCCLINVNAPIPTVVQKIHGI 68

Query: 46  --DCVHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA--CFNLDIPIHRWICTLVL 99
             + +     P+ +     N      ++AHN+ F+ + ++          ++   CTL  
Sbjct: 69  TPELLAGEKPPEAVWPEFLNFIGSNILIAHNAPFDISFIRNELQLLGLSLLNGSQCTLAF 128

Query: 100 ARSNGL---PSALKAVGEALKLSSQKMEEGKE 128
           +R          L  V   +     K  +   
Sbjct: 129 SRKKFPQLKSHKLDNVARHVLGGMPKGIKLHR 160


>gi|323457115|gb|EGB12981.1| hypothetical protein AURANDRAFT_19513 [Aureococcus anophagefferens]
          Length = 309

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 46/180 (25%), Gaps = 8/180 (4%)

Query: 464 HLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNE 523
                 +A  + +  +     +      +  + + +    +     +      ++     
Sbjct: 138 EAYYLYNAANDRDYGQESIEILLNFMENNREDLIVVLAGYKDRMDKFFSFIPGMNSRIGN 197

Query: 524 LHQAFEQTIENGKAIIARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTT 583
                   ++    I     RD+     + +  ++       R +      N R+  N  
Sbjct: 198 HIDFPNYEVDELYEIARVMTRDLEYDMSE-EAGDVFKRYIE-RRMDMPFFSNARTVRNAM 255

Query: 584 TRQLTREYTYGGKLTENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFN 643
            R                    S DI A  M     A + I+L   DE   E PD     
Sbjct: 256 DRARMNSAIRIFDEAIAP--HSSGDITAAQMKEIAPADFQIIL---DEA-LEAPDDAILA 309


>gi|317471044|ref|ZP_07930419.1| exonuclease [Anaerostipes sp. 3_2_56FAA]
 gi|316901485|gb|EFV23424.1| exonuclease [Anaerostipes sp. 3_2_56FAA]
          Length = 234

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 9/101 (8%)

Query: 63  NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSN---GLPSALKAVGEAL 116
           +    ++ HN  F+   +K     F           TL  AR          L ++ E  
Sbjct: 80  SEGYPVLGHNLMFDYRFMKTAAKRFRYAFEKEGV-DTLRAARLLLRGLESKKLSSLCEHY 138

Query: 117 KLSSQKMEEGKE--LIARFCKGETHECLYDRNKPNHREAWR 155
              +Q      +  L              +  K    E  +
Sbjct: 139 HYVNQAAHRAYDDALATAVVFESMKREFGEDQKVFVPEPLQ 179


>gi|302345204|ref|YP_003813557.1| putative DNA polymerase III subunit alpha [Prevotella
           melaninogenica ATCC 25845]
 gi|302149818|gb|ADK96080.1| putative DNA polymerase III subunit alpha [Prevotella
           melaninogenica ATCC 25845]
          Length = 1239

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/151 (7%), Positives = 39/151 (25%), Gaps = 17/151 (11%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKAC----FNLDIPIHRWICTLVLARSNGLP 106
             +P  +K    +  +        ++   ++      + + +   +    ++L+R     
Sbjct: 720 DYIPDFIKRK-HDPSLVK------YDIPCMEKYLKDTYGITVYQEQV---MLLSRQLANF 769

Query: 107 SALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT 166
           +  ++      +  +      ++  +F K         +        W  F  Y      
Sbjct: 770 TRGESDALRKAMGKKMKAIVDKMKPKFIKQGQENGHDPQILEKIWSDWEKFASYAFNKSH 829

Query: 167 VT---REIFKRLEPLSSKEQELWYLDQTIND 194
            T      ++     +    E      T   
Sbjct: 830 ATCYSWVAYQTAYMKAHYPAEYMAALMTRRF 860


>gi|229544028|ref|ZP_04433087.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
           36D1]
 gi|229325167|gb|EEN90843.1| DnaQ family exonuclease/DinG family helicase [Bacillus coagulans
           36D1]
          Length = 930

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGL--- 105
            +   + E LE++    VAHN  F+   L+               + T+  +R       
Sbjct: 72  EIAPRIMEILEDS--IFVAHNVLFDLPFLQQELKAAGFPPFRGPSLDTVEFSRIAFPTLN 129

Query: 106 PSALKAVGEALKLSSQ 121
              L  + ++L L  +
Sbjct: 130 SYKLGDLADSLSLYHE 145


>gi|289665658|ref|ZP_06487239.1| ribonuclease D [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 210

 Score = 37.8 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 52/204 (25%), Gaps = 40/204 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L      +  + +   +    M + LK
Sbjct: 23  IGLDTEFIRERTYW---------------PQLALVQLAIGEEILLIDPLIPG--MNEALK 65

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L  TD+  V H++  +    K      +       T +                A   
Sbjct: 66  EWLTATDIVKVMHSASEDLVTFKCACG--VLPRPLFDTQI---------------AAALA 108

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                   ++L+         +     +      +     EY   DV     I   L   
Sbjct: 109 GVGGGMGYQKLVQEVTGTLLTKGETRSDWMRRPLSPSQL-EYAADDVRYLFAIHDELTRR 167

Query: 179 SSKEQELWYLDQTINDRGYCVDVA 202
            +++  L +L +        V+  
Sbjct: 168 LTEQDRLGWLAEDAERLLATVEHD 191


>gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra]
 gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum B1 str. Okra]
          Length = 1432

 Score = 37.8 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 23/138 (16%)

Query: 4   LFIDFETR---SPIDLTKCGICKYAEDVCVI-LFAFGFDDH----------PVELWDCVH 49
           +  D ET    S  D          E   ++  F+   +                 D V 
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDRFSEFVNPERSIPDKITELTSITDDMVD 478

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNG 104
           D      +         D  +VAHN+ F+ + +        ++   +  + T+ L+R   
Sbjct: 479 DKEAIDKILPRFIEFIGDSVVVAHNAAFDASFINKNCKDLKIEFK-NSVMDTVTLSRFLF 537

Query: 105 LP---SALKAVGEALKLS 119
                  L  + + L +S
Sbjct: 538 PELKRYKLNVIAKHLGIS 555


>gi|291513949|emb|CBK63159.1| DNA polymerase III, alpha subunit [Alistipes shahii WAL 8301]
          Length = 1269

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 9/92 (9%)

Query: 75  FERTVLKAC----FNLDIPIHRWICTLVLARSN-GLPSALKAVGEALKLSSQKMEEGKEL 129
           ++  V++      + + +   +    ++L+R                     K +    L
Sbjct: 770 YDIPVMEKYLKDTYGITVYQEQV---MLLSRLLANFTRGESDTLRKAMGKKLKDKLDH-L 825

Query: 130 IARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
             +F +G        +        W  F  Y 
Sbjct: 826 KPKFIEGGRKNGHDPKVLEKIWGDWEKFASYA 857


>gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
 gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
          Length = 894

 Score = 37.8 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 53/186 (28%), Gaps = 41/186 (22%)

Query: 3   TLFIDFETRSPI----DLTKCGICKYAEDVCVIL------------FAFGFDDHPVELWD 46
            +  D ET        D+ +    K  E   ++                        L++
Sbjct: 512 IVVFDTETTGLDVFTDDIIEISAIKIKE-GKIVGEPLDLYIYTDKPILQKLGTKENPLYE 570

Query: 47  CVHDPVMPQVLKEA---------LENTDVTIVAHNSYFERT----VLKACFN--LDIPIH 91
             H  +    L +A           +     + HN  ++       LK   N  +D   +
Sbjct: 571 IYHKKLASGELLKANDALNKFIEFVDNSTL-IGHNINYDYHILDNCLKRYANDCMDNHSY 629

Query: 92  RWICTLVLARSNGL---PSALKAVGEALKLS----SQKMEEGKELIARFCKGETHEC-LY 143
           ++  +L L R          L+ + E  +L      Q +++ K  I+           + 
Sbjct: 630 KYFDSLKLIRLLEPSLRSYKLEYLLERFQLEGINSHQSIDDVKATISLINYCADKAQLVV 689

Query: 144 DRNKPN 149
           ++    
Sbjct: 690 EKQMDF 695


>gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
           15579]
 gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC
           15579]
          Length = 1442

 Score = 37.8 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 23/138 (16%)

Query: 4   LFIDFETR---SPIDLTKCGICKYAEDVCVI-LFAFGFDDH----------PVELWDCVH 49
           +  D ET    S  D          E   ++  F+   +                 D V 
Sbjct: 429 VVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDRFSEFVNPERSIPEKITELTSITDDMVD 488

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNG 104
           D      +         D  +VAHN+ F+ + +        ++   +  + T+ L+R   
Sbjct: 489 DKEAIDKILPRFIEFIGDSVVVAHNAAFDVSFINKNCKDLKIEFK-NSVMDTVTLSRFLF 547

Query: 105 LP---SALKAVGEALKLS 119
                  L  + + L +S
Sbjct: 548 PELKRYKLNVIAKHLGIS 565


>gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 1435

 Score = 37.8 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 6/61 (9%)

Query: 65  DVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNGLP---SALKAVGEALKL 118
           D  +  HN  F+   +        L       + TL ++R          L ++ +   +
Sbjct: 496 DRPLCGHNVQFDVGFVNAALRRAGLKEITQPVVDTLEVSRLLHPEQNRHTLDSLAKKYNV 555

Query: 119 S 119
           S
Sbjct: 556 S 556


>gi|302337887|ref|YP_003803093.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293]
 gi|301635072|gb|ADK80499.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293]
          Length = 284

 Score = 37.8 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 52/179 (29%), Gaps = 29/179 (16%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             + +D E        +  + +Y E   + L    +D   + + D +       +++E  
Sbjct: 27  REIAVDIE-------GEFNLHRYGEH--LCLVQV-WDGEVLAIVDPLVVD--LALVREIF 74

Query: 62  ENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQ 121
           E+     + ++   +RT+L   + +                         +   + L  Q
Sbjct: 75  ESGSFRKIVYDCSSDRTLLYRRYGIHFNEVC-----------------DLMPAVVLLDFQ 117

Query: 122 KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSS 180
           K      L +     E  +  + +     R       EY   DV     + + L     
Sbjct: 118 KKGLASVLSSVLHIEEKPKKKFQQYDWMSRPIDADALEYAAADVLHLFTLKEELFKRLE 176


>gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
          Length = 1432

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 23/138 (16%)

Query: 4   LFIDFETR---SPIDLTKCGICKYAEDVCVI-LFAFGFDDH----------PVELWDCVH 49
           +  D ET    S  D          E   ++  F+   +                 D V 
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDRFSEFVNPERSIPDKITELTSITDDMVD 478

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNG 104
           D      +         +  +VAHN+ F+ + +        ++   +  + T+ L+R   
Sbjct: 479 DKEAIDKILPRFIEFIGNSVVVAHNAAFDVSFINKNCKDLKIEFK-NSVMDTVTLSRFLF 537

Query: 105 LP---SALKAVGEALKLS 119
                  L  + + L +S
Sbjct: 538 PELKRYKLNVIAKHLGIS 555


>gi|258647163|ref|ZP_05734632.1| exonuclease [Prevotella tannerae ATCC 51259]
 gi|260853133|gb|EEX73002.1| exonuclease [Prevotella tannerae ATCC 51259]
          Length = 163

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 42/139 (30%), Gaps = 29/139 (20%)

Query: 5   FIDFET----RSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDC---------VHDP 51
            IDFET    RS +     G+        V  F       P                   
Sbjct: 6   AIDFETANQARSSV--CSIGLVVVRGGEQVDSFYALIRPEPNYYCYWNSRIHGLRQSDTE 63

Query: 52  VMP------QVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
             P        +   +E   + +VAHN  F++  LK     + +D P + ++ TL  AR 
Sbjct: 64  NAPVFSKVWTEIAPLIE--GLPLVAHNCRFDQGCLKAVFQVYQMDYPDYTFLDTLTAARH 121

Query: 103 NGLP---SALKAVGEALKL 118
                    L  V  A   
Sbjct: 122 ALPHLDNHQLHTVAAACGY 140


>gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A2 str. Kyoto]
 gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum A2 str. Kyoto]
          Length = 1432

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 23/138 (16%)

Query: 4   LFIDFETR---SPIDLTKCGICKYAEDVCVI-LFAFGFDDH----------PVELWDCVH 49
           +  D ET    S  D          E   ++  F+   +                 D V 
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDRFSEFVNPERSIPDKITELTSITDDMVD 478

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNG 104
           D      +         +  +VAHN+ F+ + +        ++   +  + T+ L+R   
Sbjct: 479 DKEAIDKILPRFIEFIGNSVVVAHNAAFDVSFINKNCKDLKIEFK-NSVMDTVTLSRFLF 537

Query: 105 LP---SALKAVGEALKLS 119
                  L  + + L +S
Sbjct: 538 PELKRYKLNVIAKHLGIS 555


>gi|71733128|gb|AAZ40189.1| nonmuscle myosin II [Aplysia californica]
          Length = 1902

 Score = 37.8 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 58/215 (26%), Gaps = 15/215 (6%)

Query: 104  GLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKG 163
            G    L+     L+ S+QK+ + K+L+             +  K       +   +Y   
Sbjct: 951  GKMKKLEEAAAILEDSNQKLVKEKKLMEERLGEAQLNMAEEEEKSKQLGKLKN--KYEAI 1008

Query: 164  DVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVD--VALAHTLNQIVDVERTKLDQE 221
               +   + K  +     E+    L+  + D    ++        L   +     ++   
Sbjct: 1009 IADLEERLRKEQQARQELEKIRRRLETELTDLRDQLNEKRQQVEDLQAQLAKREEEVQSA 1068

Query: 222  LESLTYGLVSSSRCLEKLKTWLFL----ETGLHLED-------LTETTCQRVLSSNKKLT 270
            L       VS S   ++++            L  E          +      L + +   
Sbjct: 1069 LRKADDEEVSKSSFQKQMREVTNQLQEVMDDLETEKEARNKAEKQKRDLNEELEALRGEL 1128

Query: 271  PQAIQVFNNRMRASRSAVLKLNTLVEAMNSDGRLR 305
              ++               ++  L   + S  +  
Sbjct: 1129 EDSLDTTAAVQELRNKREHEVQELKRMVESAQKAH 1163


>gi|332519635|ref|ZP_08396099.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
 gi|332044194|gb|EGI80388.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
           5H-3-7-4]
          Length = 398

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 47  CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARS 102
             + P   +V K  +E      IVAHN+ F+  +L+        +       CT+ L+++
Sbjct: 2   LRNAPKFYEVAKRIVEITEGCIIVAHNAQFDNRILRTEFKRLGFEFERETL-CTVELSKT 60

Query: 103 NG---LPSALKAVGEALKLS 119
                   +L  +  +L + 
Sbjct: 61  LIPDLPSYSLGKLVRSLGIP 80


>gi|307720332|ref|YP_003891472.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978425|gb|ADN08460.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
           autotrophica DSM 16294]
          Length = 247

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 73/263 (27%), Gaps = 52/263 (19%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVIL--------------FAFGFDDHPVELW--D 46
            + +D ET    +  +     Y     V+                A  F    V     D
Sbjct: 5   YVILDTETTGTNEEDRVIQLGYM----VLGAKEIEVHNEFCSTDVAIKFGAMEVHGITPD 60

Query: 47  CVHDPV------MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLA 100
            +            + L E   + +  I+ HN+ F+ T+L+        + + I TL +A
Sbjct: 61  LLEGKPPCVETVAYKRLLELNTSENYLII-HNAPFDITMLEK-EGFKTQM-KVIDTLRVA 117

Query: 101 RSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEY 160
           +              L+    KME  K+      K      +  +               
Sbjct: 118 KHVMP----DEEAHRLQYFRYKMELYKD----EEKEAKALGIVVKAHD------------ 157

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
             GDV V   +   L  L    Q  +  +  +       +  +     +    +   L++
Sbjct: 158 AIGDVLV---LKLFLSKLKDIVQAQFPNENPVEKMVDLTNTPILVKTFRFGKHKGKSLEE 214

Query: 221 ELESLTYGLVSSSRCLEKLKTWL 243
                   L    + +E +   L
Sbjct: 215 VAREDAGYLRWMLKNMENIDEDL 237


>gi|255015322|ref|ZP_05287448.1| hypothetical protein B2_15541 [Bacteroides sp. 2_1_7]
          Length = 193

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 46/175 (26%), Gaps = 29/175 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            +  D ETR      K           + L     DD    L+   H   +P+ L++ L+
Sbjct: 47  IVGFDTETR--PSFKKGQRY------KISLMQISTDD-TCFLFRLNHIG-IPESLEKFLK 96

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           ++    +  +   +   ++   +++                  P+    +   +     +
Sbjct: 97  SSSTLKIGLSLRDDFGAIRKRSDIE------------------PANFLDLQNYVGQFGIE 138

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               ++ I      +                     +Y   D      I+  L  
Sbjct: 139 DASLQK-IYAILFQKKISKGQRLTNWEADVLTDSQKKYAALDAWACLRIYNLLNQ 192


>gi|242241732|ref|ZP_04796177.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144]
 gi|242234822|gb|EES37133.1| DNA-directed DNA polymerase III [Staphylococcus epidermidis W23144]
          Length = 184

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 19/135 (14%)

Query: 4   LFIDFETR-------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           + +DFET          + + K    +  E    ++  F +          +H   +   
Sbjct: 7   VALDFETANGKRTSICSVGMVKVIDNQITESFHTLVNPFDYFTETNINVHGIHPEDVQDA 66

Query: 57  -----LKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT-LVLARSNG- 104
                +   +      + +VAHN+ F+  VL       N+D P   + C+  +  R+   
Sbjct: 67  PGFKHVYPYMLQFIDQLPVVAHNAAFDMNVLHQSLKSLNIDTPSLTYFCSYQLAKRTINA 126

Query: 105 LPSALKAVGEALKLS 119
               LK +     L 
Sbjct: 127 YRYGLKHLMNHYHLD 141


>gi|145478229|ref|XP_001425137.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392205|emb|CAK57739.1| unnamed protein product [Paramecium tetraurelia]
          Length = 681

 Score = 37.8 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/275 (8%), Positives = 72/275 (26%), Gaps = 30/275 (10%)

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQ 183
           +  K L  +  K +      ++     ++   L  +Y + D T   ++ +  + + ++ +
Sbjct: 377 KYLKLLEEQQAKRKVELEEANKRFEKKKKEKYLALKYAEQDATYMIQLQQDRKKILAQNK 436

Query: 184 ELWYLDQTINDRGYCVDVALAHTLNQ---IVDVERTKLD-----------QELESLTYGL 229
              +  + I       +        +     +    + +           Q+ +   Y +
Sbjct: 437 NPDFDAKEIKQFEDKFNQIHLEKQKKRRIQWEEREAQWNKFKAQYYSSSYQKAKDQYYRI 496

Query: 230 VSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSS---NKKLTPQAIQVFNNRMRASRS 286
            +     ++ +     +    ++   + T    L       K + +    F      S+ 
Sbjct: 497 ENVIEQEKQERLNKLSQYIKEVKQNHKPTVSEELQEKLILIKNSIKHQNDFKKYQSLSKI 556

Query: 287 AVLKL-------NTLVEAMNSDGRLRGTLQFLG------ASRTGRWSGCVFPPQNLPRPS 333
              K          L + M    +L   +                     +  +N+P   
Sbjct: 557 VQSKHQYHGVSKEKLQKNMKKKHKLVPLVNLPTKISPRDVGDFYLKQSATYNIKNIPPIH 616

Query: 334 RSHEELDQIITHLPTSITSDPDPLQIISDCVRSCV 368
           +  +  +       +               +R+  
Sbjct: 617 QVQKNDNAAKESATSLPNPKVFDYLKHQRIMRAQF 651


>gi|320540777|ref|ZP_08040357.1| hypothetical protein SSYM_0069 [Serratia symbiotica str. Tucson]
 gi|320029160|gb|EFW11259.1| hypothetical protein SSYM_0069 [Serratia symbiotica str. Tucson]
          Length = 65

 Score = 37.8 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 70  AHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           AHN++ +RT+        +       T+V + ++GLP +L  + + L +
Sbjct: 1   AHNNHLDRTI-SNHAMPGVAAGDV-DTMVRSLAHGLPGSLGDLCDILNV 47


>gi|145550275|ref|XP_001460816.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428647|emb|CAK93419.1| unnamed protein product [Paramecium tetraurelia]
          Length = 720

 Score = 37.8 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 78/287 (27%), Gaps = 45/287 (15%)

Query: 24  YAEDVCVILFAF---GFDDHPVELWDCVHDPVMPQVLKEALEN---TDVTIVAH---NSY 74
           Y ++  +   A      +++ V + D  +     + L + L N   ++   + H   N  
Sbjct: 362 YFDEFAIGGVAIMQISTENN-VYIIDIFNLREKLE-LLQFLNNYFASNKIKIGHSVWN-- 417

Query: 75  FERTVLKACFNLD--IPIHRWICTLVLARSNG--LPSALKAVGEALKLSSQKMEEGKELI 130
            + TV+    NLD  +     +    L        P     V  A   +      GK+L 
Sbjct: 418 -DFTVMAQNMNLDQTVEPKNIVD---LTFLYNEVFPENKNNVSLA---NQVYQLFGKKLS 470

Query: 131 ARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQ 190
            + C          +              Y   D  +   ++ +L  L     ++  L Q
Sbjct: 471 KKECFSNWQRRPLRK----------CQLHYGAMDAYICIALYLKLNQLKQ--LDIVQLPQ 518

Query: 191 TINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFLETGLH 250
                           + +   +      Q++      +      + K         G+ 
Sbjct: 519 LQQQHQTQQKSKKIQQIQKGEHLRYDLQFQKIIDDKQKMKFLVDAMLKKLATFLRNLGI- 577

Query: 251 LEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEA 297
                          N   T +   +   R+  +R   L     ++A
Sbjct: 578 --------DAEYNEKNDHQTIEQQAIAEQRVIITRDKKLYEKPQLKA 616


>gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 837

 Score = 37.4 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 19/139 (13%)

Query: 40  HPVELWDCVHDPVMPQVLKEALENTDVTI-----------VAHNSYFERTVLK----ACF 84
                     D ++    KE +E  +              V HN  ++  ++K       
Sbjct: 521 GESYYVHGFSDDLLQ---KEGMEPKEALKQFVHFIQGAVLVGHNVNYDLQIIKSMMSRYK 577

Query: 85  NLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYD 144
              I  ++   TL LA       +   +    KL   +       +              
Sbjct: 578 LEPIGEYQVYDTLDLAYKVYPKLSNHKLETLSKLIVTETIPTHNAMQDILATSEVLSHLL 637

Query: 145 RNKPN-HREAWRLFGEYCK 162
           ++     +E       Y  
Sbjct: 638 KHIEEKKQERLEKIEAYGC 656


>gi|150007050|ref|YP_001301793.1| hypothetical protein BDI_0393 [Parabacteroides distasonis ATCC
           8503]
 gi|256840209|ref|ZP_05545717.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262381047|ref|ZP_06074185.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377471|ref|ZP_06987423.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19]
 gi|301311285|ref|ZP_07217213.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3]
 gi|149935474|gb|ABR42171.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256737481|gb|EEU50807.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262296224|gb|EEY84154.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265490|gb|EFI07151.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19]
 gi|300830859|gb|EFK61501.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3]
          Length = 193

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 46/175 (26%), Gaps = 29/175 (16%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            +  D ETR      K           + L     DD    L+   H   +P+ L++ L+
Sbjct: 47  IVGFDTETR--PSFKKGQRY------KISLMQISTDD-TCFLFRLNHIG-IPESLEKFLK 96

Query: 63  NTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQK 122
           ++    +  +   +   ++   +++                  P+    +   +     +
Sbjct: 97  SSSTLKIGLSLRDDFGAIRKRSDIE------------------PANFLDLQNYVGQFGIE 138

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEP 177
               ++ I      +                     +Y   D      I+  L  
Sbjct: 139 DASLQK-IYAILFQKKISKGQRLTNWEADVLTDSQKKYAALDAWACLRIYNLLNQ 192


>gi|288800747|ref|ZP_06406204.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332208|gb|EFC70689.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 1236

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 19/99 (19%)

Query: 73  SYFERTVLKAC----FNLDIPIHRWICTLVLARSN-----GLPSAL-KAVGEALKLSSQK 122
             ++   ++      + + +   +    ++LAR       G    L KA+G+ L     K
Sbjct: 735 IQYDIPCMEKYLKDTYGITVYQEQV---MLLARQLAGFTRGQSDTLRKAMGKKLIAQMDK 791

Query: 123 MEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYC 161
                 L   F +G        +      E W+ F  Y 
Sbjct: 792 ------LETLFYEGGVKNGHDQKVLNKIWEDWKKFASYA 824


>gi|110638081|ref|YP_678290.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280762|gb|ABG58948.1| DNA polymerase III, epsilon subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 449

 Score = 37.4 bits (85), Expect = 7.3,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 23/143 (16%)

Query: 1   MATLFIDFETR----SPIDLTKCGICKYAEDVCVILFAFGFDDH---PVELWDCV----- 48
           M    ID ET     S   + +  I K+  +     +    +     PV +         
Sbjct: 1   MMYSIIDIETTGGHASGNRIIEIAIYKFDGEKITDTYQTLINPERRIPVFITSLTGIDTE 60

Query: 49  --HDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLAR 101
              D  +   +   + +   D   VAHN  F+ T +K      N+   + +  CT+ L+R
Sbjct: 61  MVADAPVFADVAREITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYNLPKL-CTVRLSR 119

Query: 102 SNG---LPSALKAVGEALKLSSQ 121
                    +L  +  +L +  Q
Sbjct: 120 KIFPGLPSYSLGNLCGSLGIDVQ 142


>gi|325852036|ref|ZP_08171119.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
 gi|325484592|gb|EGC87508.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 34/152 (22%)

Query: 3   TLFIDFETRSPI----DLTKCGICKYAEDVCVIL------------FAFGFDDHPVELWD 46
            +  D ET        D+ +    +      ++                   D    ++ 
Sbjct: 514 IIVFDTETTGLDVFTDDIIEIAAMR-IRGGEIVGEPLDLYIETGKPILPKLGDKENPMYA 572

Query: 47  CVHDPVMPQVLK---EALEN-----TDVTIVAHNSYFER----TVLKACFNLDIP--IHR 92
             H+ +    L    EAL           I+ HN+ ++       L+   N  +    +R
Sbjct: 573 IYHEKMAAGELLAPAEALCRFLAYIGTYPILGHNASYDYNILDNCLRRYCNDTMQAHGNR 632

Query: 93  WICTLVLARSNGL---PSALKAVGEALKLSSQ 121
              +L L R          L+++ E  +L+ Q
Sbjct: 633 CFDSLKLIRLLAPSLHSYKLESLLETFRLTGQ 664


>gi|312374647|gb|EFR22158.1| hypothetical protein AND_15698 [Anopheles darlingi]
          Length = 758

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 43/164 (26%), Gaps = 20/164 (12%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           +  D E   P      G  + A      L     +     L+       +P  L + L +
Sbjct: 206 IAFDLE--WPFSFKT-GPGRTA------LLQLCVEPDRCILYQLSCLKHLPIALLQLLRH 256

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKM 123
             V ++  N   +   L      D P    + + ++ R   L      +     +     
Sbjct: 257 KRVILLGVNIKNDLRKLAR----DFPEVSSVDS-IIERCIDLGQFYNKLHNRTGI----- 306

Query: 124 EEGKELIARFCKGETHECLYDRNKPNHREAW-RLFGEYCKGDVT 166
                L+ +  K   ++    R               Y   DV 
Sbjct: 307 WSMDRLVQQVLKQRVNKDKRVRMSKWDVLPLSEDQKRYAAIDVY 350


>gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland]
 gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum F str. Langeland]
 gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
           botulinum F str. 230613]
          Length = 1432

 Score = 37.4 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 23/138 (16%)

Query: 4   LFIDFETR---SPIDLTKCGICKYAEDVCVI-LFAFGFDDH----------PVELWDCVH 49
           +  D ET    S  D          E   ++  F+   +                 D V 
Sbjct: 419 VVFDLETTGFSSKNDKIIEIGAVKIEKGKIVDRFSEFVNPERSIPDKITELTSITDDMVD 478

Query: 50  DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLKAC---FNLDIPIHRWICTLVLARSNG 104
           D      +         +  +VAHN+ F+ + +        ++   +  + T+ L+R   
Sbjct: 479 DKEAIDKILPRFIEFIGNSVVVAHNAAFDVSFINKNCKDLKIEFK-NSVMDTVTLSRFLF 537

Query: 105 LP---SALKAVGEALKLS 119
                  L  + + L +S
Sbjct: 538 PELKRYKLNVIAKHLGIS 555


>gi|307545281|ref|YP_003897760.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
 gi|307217305|emb|CBV42575.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
          Length = 255

 Score = 37.4 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 43/150 (28%), Gaps = 32/150 (21%)

Query: 1   MATLFIDFETRSPIDLTKCGICKY----AEDVCVILFAF--------GFDDHPVELWDCV 48
           M  + +D ET          + +       +  +    +          +   VE+    
Sbjct: 1   MRQIILDTETTGIDPREGHRLIEIGAVEMVNRRLTGNTYHQYINPERDIEAEAVEVHGIT 60

Query: 49  HDPVMPQVLKEALEN------TDVTIVAHNSYFERTVLKA------------CFNLDIPI 90
           ++ V  + +   + +          +V HN+ F+   +                      
Sbjct: 61  NEKVADEPVFAEVADAFWAFIKGAELVIHNAPFDVGFIDHEFARLNEARGGPVLGPVAEH 120

Query: 91  HRWICTLVLARSNGLPS--ALKAVGEALKL 118
            R + TL LAR         L A+ +  ++
Sbjct: 121 CRILDTLQLARDKHPGQRNNLDALCKRYEI 150


>gi|323342398|ref|ZP_08082630.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463510|gb|EFY08704.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 200

 Score = 37.4 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 46/176 (26%), Gaps = 31/176 (17%)

Query: 6   IDFETRSP----IDLTKCGICKYAEDVCVILFAFGFDDHPVE--------------LWDC 47
           ID ET        D+T+    KY     V  F+                       + D 
Sbjct: 18  IDLETTGRSNKFEDITELSAIKYRNYKQVDAFSTLVKPDNSILPFVVELTGITEEMVSDA 77

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFER-TVLKACF---NLDIPIHRWICTLVLARSN 103
                + +   + +    +    HN  F+   V  A      L +  + ++ TL ++R  
Sbjct: 78  PKIDQVIKQFVDFIGTDVIL--GHNVMFDYGLVYDAYLATVGLRMH-NDYVDTLRVSRLL 134

Query: 104 G---LPSALKAVGEALKLSSQKMEEGKE---LIARFCKGETHECLYDRNKPNHREA 153
                   L+ +     +       G E     A        +    R     +  
Sbjct: 135 NKDSKNHKLETLCAYFDVERLVGHRGSEDCLQTAEVYIKMKDKYKRLRQIQKDKAP 190


>gi|218265111|ref|ZP_03478699.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221600|gb|EEC94250.1| hypothetical protein PRABACTJOHN_04409 [Parabacteroides johnsonii
           DSM 18315]
          Length = 174

 Score = 37.4 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 25/138 (18%)

Query: 5   FIDFETR--SPIDLTKCGICKYAEDVCVILFAFGFDDHPVEL---------------WDC 47
            IDFET       +   GI    ++  +         +P                   D 
Sbjct: 6   AIDFETANGKRSSICSIGIAIIEDNKVIDSIYTLVRPYPNFYTRFTTAVHGITMQDTIDS 65

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNG 104
                +   +   L++  + +VAHNS F+   L+A    ++L  P +++ CT  L+R   
Sbjct: 66  PDFEEVWSEIAGKLQD--IPLVAHNSPFDEGCLRAAHEAYDLAYPKYQFYCTCRLSRRMY 123

Query: 105 L---PSALKAVGEALKLS 119
                  L+ V       
Sbjct: 124 PFLVNHQLQTVAAHCGYD 141


>gi|308174031|ref|YP_003920736.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606895|emb|CBI43266.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552843|gb|AEB23335.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Bacillus amyloliquefaciens TA208]
 gi|328912360|gb|AEB63956.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
           LL3]
          Length = 928

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 51  PVMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL-- 105
             + + +   L       VAHN +F+   ++        ++     + T+ L+R      
Sbjct: 73  EAVAEEIFHLL--DGAYFVAHNIHFDLGFVRHELSEAGYELTDCEVLDTVELSRIVFPGF 130

Query: 106 -PSALKAVGEALKLSSQ 121
               L  +   L +   
Sbjct: 131 EGYKLGELCAELNIVHD 147


>gi|163841118|ref|YP_001625523.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209]
 gi|162954594|gb|ABY24109.1| ribonuclease D [Renibacterium salmoninarum ATCC 33209]
          Length = 480

 Score = 37.4 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 37/139 (26%), Gaps = 29/139 (20%)

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENT--DVTIVAHNSYFERTVLKACFNLDIP 89
           L     +     L D      +     + +++    V  + H +  +   L     L + 
Sbjct: 121 LVQIRREGAGTWLIDPEPFDDL-----KIIDDALNGVEWILHAASQDLPCLSE---LGMW 172

Query: 90  IHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKP 148
                 T + AR  GLP   L AV E L                           D +  
Sbjct: 173 PSALFDTELAARIAGLPKVGLAAVVEQL---------------LGFGLAKEHSAADWSTR 217

Query: 149 NHREAWRLFGEYCKGDVTV 167
              E W     Y   DV V
Sbjct: 218 PLPEPW---LRYAALDVEV 233


>gi|269101978|ref|ZP_06154675.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161876|gb|EEZ40372.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 241

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 39/166 (23%), Gaps = 41/166 (24%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAF---------------------GFDDH 40
             +  D ET             + E   +I                           D  
Sbjct: 7   RIIVFDTETTGMNM-----SGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPDRAIDPE 61

Query: 41  PVELWDCVH----DPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK---ACFNL-DIPI 90
            +E+                + +   +      +VAHN+ F+   +        L D+  
Sbjct: 62  AIEVHGITDEFLVGKPTYAEIHQEFMDFIQGAELVAHNAPFDIGFMDYEFRKLGLKDLKT 121

Query: 91  H---RWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
               +   TL +A+         L  +     + +        L+ 
Sbjct: 122 DEMCKVTDTLDMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLD 167


>gi|115774511|ref|XP_799867.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115968415|ref|XP_001181196.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 920

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 66/251 (26%), Gaps = 30/251 (11%)

Query: 68  IVAHNSYF-ERTVLKACFNLDIPIHRWICTLVLARSNG-----LPSALKAVGEALKLSSQ 121
               N  + +  + +          +     + AR        L   L  + + LK S  
Sbjct: 192 KAFFNIAYLQSHMQRKHPEFTPRPPQADDN-ITARKMNEVSEKLEKELDELRDRLKFSES 250

Query: 122 KMEEGKE----LIARFCKGETHECLYDRNKPNHREAWRLFG-EYCKGDVTVTREIFKRLE 176
           ++ E +E     I    + + ++   ++ + +HR+    +  E          ++     
Sbjct: 251 QVAEERERAQEQIKMALQQKQNQGEAEKQEEHHRKELERWKHEQLSFQKVEMEKMQNMFM 310

Query: 177 PLSSKEQELWYLDQ-----------TINDRGYCVDVALAHTLNQIVDVERTKLDQELESL 225
               +  + +   Q             +  G  VD                K ++E+  L
Sbjct: 311 KELKEMHDKYTSSQTALENIQSKLGKQSMLGKIVDEDELEEY----KRRSKKQEKEMGKL 366

Query: 226 TYGLVSSSRCLEKLKTWLFLETGLHLEDLTE---TTCQRVLSSNKKLTPQAIQVFNNRMR 282
              L +    ++                  +   ++ +  +   K L  Q  ++      
Sbjct: 367 KEELQTEISTVQTQMATDLKRKEEEWRKKQKELRSSYKEEVKELKALLKQTKELLEIERE 426

Query: 283 ASRSAVLKLNT 293
                  K   
Sbjct: 427 GGDKKGAKYQK 437


>gi|19069923|emb|CAC38117.2| polymerase epsilon subunit like protein [Providencia rettgeri]
 gi|19882268|gb|AAM01212.1| putative 3'-5'exonuclease [IncJ plasmid R391]
 gi|20095154|gb|AAM08020.1| hypothetical protein [Providencia rettgeri]
 gi|262318129|dbj|BAI48455.1| hypothetical protein [Proteus mirabilis]
          Length = 302

 Score = 37.4 bits (85), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 21/100 (21%)

Query: 6   IDFETRS----PIDLTKCGICK--YAEDV-CVILFA--FGFDDHPVELWD---------- 46
           +D ET         + + G+ K  Y+     ++         + P +             
Sbjct: 55  LDTETTGLSADDESIIELGMVKVLYSPSAQRIVSIVDVISLYEDPGKPIPELITELTGIT 114

Query: 47  --CVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLKACF 84
              V    +   L  +  + D  +VAHN+ F+R   +  F
Sbjct: 115 DEMVQGQRIDDALVASWLSDDPLVVAHNAQFDRPFFEKRF 154


>gi|84624243|ref|YP_451615.1| ribonuclease D [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576150|ref|YP_001913079.1| ribonuclease D [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84368183|dbj|BAE69341.1| ribonuclease D [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520602|gb|ACD58547.1| ribonuclease D [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 363

 Score = 37.4 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 51/204 (25%), Gaps = 40/204 (19%)

Query: 4   LFIDFE-----TRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           + +D E     T                   + L      +  + +   +    M   LK
Sbjct: 23  IGLDTEFIRERTYW---------------PQLALVQMAIGEEILLIDPLIPG--MNAALK 65

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
           E L  TD+  V H++  +    K      +       T +                A   
Sbjct: 66  EWLTATDIVKVMHSASEDLVTFKCACG--VLPRPLFDTQI---------------AAALA 108

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178
                   ++L+         +     +      +     EY   DV     I   L   
Sbjct: 109 GVGGGMGYQKLVQEVTGTLLTKGETRSDWMRRPLSPSQL-EYAADDVRYLFAIHDELTRR 167

Query: 179 SSKEQELWYLDQTINDRGYCVDVA 202
            +++  L +L +        V+  
Sbjct: 168 LTEQNRLGWLAEDAERLLATVEHD 191


>gi|91776204|ref|YP_545960.1| hypothetical protein Mfla_1852 [Methylobacillus flagellatus KT]
 gi|91710191|gb|ABE50119.1| conserved hypothetical protein [Methylobacillus flagellatus KT]
          Length = 258

 Score = 37.4 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 65/263 (24%), Gaps = 53/263 (20%)

Query: 3   TLFIDFET----------RSPI-DLTKCGICKYAEDVC---------------VILFAFG 36
           TL  D ET           S   D T   + + A                   V+  +  
Sbjct: 4   TLIFDIETIPDTEGLRTLYSLPHDTTDEDVARVAFHKRRQQNGGEFLPLHQHRVVAISCA 63

Query: 37  FDDHPVELW-----DCVHDPVMPQVLKEALENTDVTIVAHNSY-FERTVLK-ACFNLDIP 89
             +               +  + Q   + +E     +V+ N   F+  VL        I 
Sbjct: 64  LREGESFRVWTLGSPDAPEQEIIQRFFDGIEKYSPNLVSWNGGGFDLPVLHYRGLVHGIV 123

Query: 90  IHRWICTL-----------VLARSNGLPSALKAV-GEALKLSSQKMEEGKELIARFCKGE 137
             R+   +            ++R +     L  +       ++  ++E  +L     K  
Sbjct: 124 APRYWD-MGDDDREFKWNNYISRYHTRHMDLMDLMALYNGRANAPLDEIAQLCGFPGKLG 182

Query: 138 THECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGY 197
                    +   +       +YC+ DV  T  ++ R +                     
Sbjct: 183 MDGSKV--WEAFVKGEIDAIRDYCETDVANTYLVYLRFQ-----LMRGVLDRAAYEREIT 235

Query: 198 CVDVALAHTLNQIVDVERTKLDQ 220
            V   LA    +          Q
Sbjct: 236 LVRDTLAGYQGEHWQEFLNHWRQ 258


>gi|330998346|ref|ZP_08322170.1| 3'-5' exonuclease [Paraprevotella xylaniphila YIT 11841]
 gi|329568452|gb|EGG50257.1| 3'-5' exonuclease [Paraprevotella xylaniphila YIT 11841]
          Length = 206

 Score = 37.4 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 42/174 (24%), Gaps = 37/174 (21%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH----PVELWDCVHDPVMPQVLK 58
            L +D ETR      K  + K A      L     DD      +              +K
Sbjct: 46  VLGVDTETR--PSFRKGCVNKVA------LLQVSTDDTCFLFRLNYIGVT------DSVK 91

Query: 59  EALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKL 118
             L++ +V  V  +   +   L      +     ++              L+    A  +
Sbjct: 92  RLLQDENVLKVGLSLRDDFASL--HKRGEFEPRAFLD-------------LQDYVRAFGI 136

Query: 119 SSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
               +++    I     G+                      Y   D      ++
Sbjct: 137 EDMSLQKLYANI----FGQKISKGQRLTNWEADVLTEGQKLYAATDAWACIRLY 186


>gi|194173081|ref|YP_002003725.1| DNA polymerase [Escherichia phage rv5]
 gi|114796119|gb|ABI79293.1| DNA polymerase [Escherichia phage rv5]
          Length = 775

 Score = 37.4 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 95/344 (27%), Gaps = 48/344 (13%)

Query: 161 CKGDVTVTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQ 220
              D  V   ++  ++ L   E      D  IN      +   A     +         +
Sbjct: 423 ALPDADVDARVYAYMDELLESEY----CDLIINFW----NKTDAKFQTTVHKFRSFPNSE 474

Query: 221 ELESLTYGLVSSSRCLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNR 280
            ++   +G +            L    G    +      +++     K     + + N R
Sbjct: 475 RIKKEVFGKIRRKARALITSPQLKDTFGHLCPN-----LEKLNGEMAKDIVLWLSLRNRR 529

Query: 281 MRASRSAVLKLN-TLVEAMNSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEEL 339
                    K++  L+         +   +  G + T R    +    N+P+PS      
Sbjct: 530 SVLDPIKEDKVDTGLLNHPRLKIDHKLPAKSSGLTNTSRQKHSI--CANMPKPSPK---- 583

Query: 340 DQIITHLPTSITSDPDPLQIISDCVRSCVIASEGKKLVVADLAGIEARVLAWMA--GEQW 397
                              ++   +RS      G   +  D + +E  + AW A   +  
Sbjct: 584 ------------------VVMGKEMRSLWGVPPGYFEIGIDGSNLEQLIGAWGAFEFDNG 625

Query: 398 KLKAFETGEDLYVTTYARSFNVAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGL 457
                 +  D +         VA  +V+++    GK +   + Y         M     L
Sbjct: 626 LYYDVVSNGDAHQNNAEAYTKVAGREVSRND---GKPITYGVMYGAQKDKVADM-----L 677

Query: 458 NLNTFAHLVKTNSAPEEWEDAENFCRWMQENHPEHAIEDLFIGT 501
           +++        ++  +     +     +++       + ++   
Sbjct: 678 DISPELGQRVIDALWDANPGLKGRKEDLEKFWEATGKKFIYSFD 721


>gi|327401413|ref|YP_004342252.1| DNA polymerase Pol2 [Archaeoglobus veneficus SNP6]
 gi|327316921|gb|AEA47537.1| DNA polymerase Pol2 [Archaeoglobus veneficus SNP6]
          Length = 786

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 64/207 (30%), Gaps = 37/207 (17%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEAL 61
             L  D E      L+  G+    +D  ++  +    D      D ++     +VLK  +
Sbjct: 166 KILAFDCE-----MLSAVGMPDPEKDPIIV-ISVKSGDFE----DIINGDDEREVLKRFV 215

Query: 62  E-----NTDVTIVAHNS-YFERTVLKAC---FNLDIPIHRWICTLVLARSNGLPSALKAV 112
           +     + DV  V +N   F+   +K      ++ + I R            +      +
Sbjct: 216 KAVKDIDPDVI-VGYNQDSFDWPYIKKRAEKLSVRLDIGRDR------SELAMRGGRPKI 268

Query: 113 GEALKLSSQ---------KMEEGKELIARFCKGETHECLYDRNKPNHRE--AWRLFGEYC 161
              L +            K+++ + +            +  ++   H           Y 
Sbjct: 269 AGRLNVDLYDIAMRSIDVKIKKLENVAEFLGTKVELADIEAKDIYKHWTRGDREAVLRYA 328

Query: 162 KGDVTVTREIFKRLEPLSSKEQELWYL 188
           + DV  T  I + L P+  +   +  +
Sbjct: 329 RQDVLNTYFIAEELLPMHYELSRMIRI 355


>gi|319760362|ref|YP_004124300.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039076|gb|ADV33626.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 251

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 45/169 (26%), Gaps = 47/169 (27%)

Query: 2   ATLFIDFETRSPI----------------------DLTKCGICKY--------AEDVCVI 31
             + +D ET                           LTK     Y        +E   + 
Sbjct: 7   RYVILDTETTGMNKFGIHYEGHKIIEIGAVEIINRSLTKNKFHVYLNPNRPVDSEAFKIH 66

Query: 32  LFAFGFDDHPVELWDCVHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDI 88
             +  F        D  +           +  +++  V HN+ F+   L       NL  
Sbjct: 67  GISDRFLKDKPVFSDISN------KFLSFICGSNL--VIHNASFDVGFLNFELRETNLKY 118

Query: 89  PI----HRWICTLVLARSNGLPS--ALKAVGEALKLSSQKMEEGKELIA 131
                    I +L LAR+       +L A+ E   +   +      LI 
Sbjct: 119 KTLETYCSIIDSLKLARNLFPGQRNSLDALCERYFIDISQRNLHNALID 167


>gi|313886877|ref|ZP_07820581.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923674|gb|EFR34479.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 1287

 Score = 37.4 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 61/232 (26%), Gaps = 19/232 (8%)

Query: 71  HNSYFERT----VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
               ++       LK  + + +   +    ++L+R  G  +   +      +  +K +E 
Sbjct: 749 QEITYDLPEMEPYLKDTYGITVYQEQV---MILSRVLGDFTRGDSDSLRKAMGKKKEKEM 805

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT-VTREIFKRLEPLSSKEQEL 185
            +   +F +    +           + W+ F  Y       V                  
Sbjct: 806 AKYRIKFVENGVAKGHPRDTLERIYDGWQKFASYAFNKSHSVCYAWVAYQTAYLKAHYPA 865

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
            ++   +       D             E   +  E++        ++    K     F 
Sbjct: 866 QFMAALLTCNQSKSDK------LTKYLEEVQHMGLEVKGPDVNESFTAFSANKEGVIRFG 919

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN--RMRASRSAVLKLNTLV 295
             G+    L   +    +   ++       V++   R   S  +   L  L+
Sbjct: 920 LGGISHVGL---SVAEAIIQEREEHGAYQDVYDFFQRTDLSNCSRRALEALI 968


>gi|332299966|ref|YP_004441887.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177029|gb|AEE12719.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 1272

 Score = 37.4 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 61/232 (26%), Gaps = 19/232 (8%)

Query: 71  HNSYFERT----VLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSSQKMEEG 126
               ++       LK  + + +   +    ++L+R  G  +   +      +  +K +E 
Sbjct: 735 QEITYDLPEMEPYLKDTYGITVYQEQV---MILSRVLGDFTRGDSDSLRKAMGKKKEKEM 791

Query: 127 KELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVT-VTREIFKRLEPLSSKEQEL 185
            +   +F +    +           + W+ F  Y       V                  
Sbjct: 792 AKYRIKFVENGVAKGHPRDTLERIYDGWQKFASYAFNKSHSVCYAWVAYQTAYLKAHYPA 851

Query: 186 WYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEKLKTWLFL 245
            ++   +       D             E   +  E++        ++    K     F 
Sbjct: 852 QFMAALLTCNQSKSDK------LTKYLEEVQHMGLEVKGPDVNESFTAFSANKEGVIRFG 905

Query: 246 ETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNN--RMRASRSAVLKLNTLV 295
             G+    L   +    +   ++       V++   R   S  +   L  L+
Sbjct: 906 LGGISHVGL---SVAEAIIQEREEHGAYQDVYDFFQRTDLSNCSRRALEALI 954


>gi|76798115|ref|ZP_00780369.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae 18RS21]
 gi|76586523|gb|EAO63027.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae 18RS21]
          Length = 740

 Score = 37.4 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL--- 105
            +   + + +E+     VAHN  F+  +L         ++   R   T+ L++       
Sbjct: 89  QVAHHIYQLIED--CIFVAHNVKFDANLLAEQLFLEGCELRTPRI-DTVELSQVFYPCLE 145

Query: 106 PSALKAVGEALKLS 119
             +L A+ E+L + 
Sbjct: 146 KYSLGALAESLNIE 159


>gi|319399859|gb|EFV88106.1| exonuclease family protein [Staphylococcus epidermidis FRI909]
          Length = 184

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 19/135 (14%)

Query: 4   LFIDFETR-------SPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV 56
           + +DFET          + + K    +  E    ++  F +          +H   +   
Sbjct: 7   VALDFETANGKRTSICSVGMVKVIDNQITESFHTLVNPFDYFTETNINVHGIHPEDVQDA 66

Query: 57  -----LKEALEN--TDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICT-LVLARSNG- 104
                +   +      + +VAHN+ F+  VL       N+D P   + C+  +  R+   
Sbjct: 67  PGFKHVYPYMLQFIDQLPVVAHNAAFDMNVLHQSLKSLNIDTPSLTYFCSYQLAKRTINA 126

Query: 105 LPSALKAVGEALKLS 119
               LK +     L 
Sbjct: 127 YRYGLKHLMNHYHLD 141


>gi|149199563|ref|ZP_01876597.1| putative exonuclease [Lentisphaera araneosa HTCC2155]
 gi|149137359|gb|EDM25778.1| putative exonuclease [Lentisphaera araneosa HTCC2155]
          Length = 165

 Score = 37.4 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 18/113 (15%)

Query: 1   MATLFIDFETRSPIDLTKCGICKYAEDVCVI------LFAFGFDDHPVELWDCVHDPVMP 54
           M  + IDFET +    + C +     +  VI      L     +++     D        
Sbjct: 1   MDFVAIDFETATAKRNSACAVAIITVEKGVIVDEYSELIQPPNNEYSWRNIDVHGIEPRH 60

Query: 55  QVLKEALEN--TDVTI-------VAHNSYFERTVLKA---CFNLDIPIHRWIC 95
            + KE  E+   ++         VAHN  F+R+V+      ++LD        
Sbjct: 61  TMYKEDFEDLYPEIRKRLTGKLVVAHNESFDRSVMTRSMEYYDLDYADLGVAD 113


>gi|242398902|ref|YP_002994326.1| DNA polymerase [Thermococcus sibiricus MM 739]
 gi|242265295|gb|ACS89977.1| DNA polymerase [Thermococcus sibiricus MM 739]
          Length = 1469

 Score = 37.4 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 60/205 (29%), Gaps = 37/205 (18%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDH---------PVELWDC-VHDP 51
             L  D ET                   +I+ ++  ++           +   D   ++ 
Sbjct: 136 KMLAFDIETFYHE-------GDEFGKGEIIMISYADEEGARVITWKNIDLPYVDVVSNER 188

Query: 52  VMPQVLKEALE--NTDVTIVAHNS-YFERTVL-KACFNLDIPIHRWICT---------LV 98
            M +   + ++  + DV  + +N   F+   L K    L + +               + 
Sbjct: 189 EMIKRFIQIIKEKDPDVI-ITYNGDNFDLPYLIKRAEKLGLRLILSRDNENPVPKIQRMG 247

Query: 99  LARSNGLPSALKA-----VGEALKLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREA 153
            + +  +   +       V  A+ L +  +E   E +    K +              E 
Sbjct: 248 NSFAVEIKGRIHFDLFPVVKRAVNLPTYTLEAVYETVLGKHKSKLGAEEIA-AIWETEEG 306

Query: 154 WRLFGEYCKGDVTVTREIFKRLEPL 178
            +   +Y   D   T E+ +   P+
Sbjct: 307 LKKLAQYSMEDAKATYELGREFFPM 331


>gi|77413703|ref|ZP_00789886.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus agalactiae 515]
 gi|77160248|gb|EAO71376.1| putative DnaQ family exonuclease/DinG family helicase
           [Streptococcus agalactiae 515]
          Length = 835

 Score = 37.4 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL--- 105
            +   + + +E+     VAHN  F+  +L         ++   R   T+ L++       
Sbjct: 89  QVAHHIYQLIED--CIFVAHNVKFDANLLAEQLFLEGCELRTPRI-DTVELSQVFYPCLE 145

Query: 106 PSALKAVGEALKLS 119
             +L A+ E+L + 
Sbjct: 146 KYSLGALAESLNIE 159


>gi|76786927|ref|YP_329306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus agalactiae A909]
 gi|77411574|ref|ZP_00787916.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae CJB111]
 gi|76561984|gb|ABA44568.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae A909]
 gi|77162359|gb|EAO73328.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae CJB111]
          Length = 835

 Score = 37.4 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL--- 105
            +   + + +E+     VAHN  F+  +L         ++   R   T+ L++       
Sbjct: 89  QVAHHIYQLIED--CIFVAHNVKFDANLLAEQLFLEGCELRTPRI-DTVELSQVFYPCLE 145

Query: 106 PSALKAVGEALKLS 119
             +L A+ E+L + 
Sbjct: 146 KYSLGALAESLNIE 159


>gi|206901926|ref|YP_002251415.1| hypothetical protein DICTH_1602 [Dictyoglomus thermophilum H-6-12]
 gi|206741029|gb|ACI20087.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 164

 Score = 37.4 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 24/170 (14%)

Query: 1   MA--TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLK 58
           M     ++D ET         G+     D+ VI   +  +         + D + P  L 
Sbjct: 1   MKVYEAYLDIETT--------GLSPIYSDITVIGI-YLENSEDSIFIQLIGDDITPYNLS 51

Query: 59  EALENTDVTIVAHNSY-FERTVLKACFNLDIPIHRWI-CTLVLARSNGLPSALKAVGEAL 116
             +E    TI  +N   F+   + A   +++  + +    +      GL   LK V E L
Sbjct: 52  YIME-KVHTIYTYNGSRFDLPFINAKLGINLEDYAFHEDLMYRCWKRGLYGGLKKVEERL 110

Query: 117 KLSSQ-KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDV 165
            +  + K  +G+  +  + K   H  +            RL  EY K DV
Sbjct: 111 GIERKLKEVDGRMAVILWYKYIRHNDINA---------LRLLLEYNKEDV 151


>gi|22536702|ref|NP_687553.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus agalactiae 2603V/R]
 gi|25010639|ref|NP_735034.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus agalactiae NEM316]
 gi|22533544|gb|AAM99425.1|AE014216_1 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus agalactiae 2603V/R]
 gi|23094993|emb|CAD46214.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 835

 Score = 37.4 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL--- 105
            +   + + +E+     VAHN  F+  +L         ++   R   T+ L++       
Sbjct: 89  QVAHHIYQLIED--CIFVAHNVKFDANLLAEQLFLEGCELRTPRI-DTVELSQVFYPCLE 145

Query: 106 PSALKAVGEALKLS 119
             +L A+ E+L + 
Sbjct: 146 KYSLGALAESLNIE 159


>gi|77405453|ref|ZP_00782546.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae H36B]
 gi|77175946|gb|EAO78722.1| DnaQ family exonuclease/DinG family helicase, putative
           [Streptococcus agalactiae H36B]
          Length = 835

 Score = 37.4 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGL--- 105
            +   + + +E+     VAHN  F+  +L         ++   R   T+ L++       
Sbjct: 89  QVAHHIYQLIED--CIFVAHNVKFDANLLAEQLFLEGCELRTPRI-DTVELSQVFYPCLE 145

Query: 106 PSALKAVGEALKLS 119
             +L A+ E+L + 
Sbjct: 146 KYSLGALAESLNIE 159


>gi|157828635|ref|YP_001494877.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933351|ref|YP_001650140.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
 gi|157801116|gb|ABV76369.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908438|gb|ABY72734.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
          Length = 281

 Score = 37.4 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 43/172 (25%), Gaps = 36/172 (20%)

Query: 4   LFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALEN 63
           L ID E             +Y     + +     +++   +    +      +  + L +
Sbjct: 23  LSIDTE----------FERRYTYYAQLSIIQVKAEEYCGIIDALSNLD--LNIFNKLLAD 70

Query: 64  TDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSAL--KAVGEAL-KLSS 120
            ++T + H    +  +    F             + A   G    L    +   L  ++ 
Sbjct: 71  NNITKIFHAPREDLEIFYNLF--KTLPANVFDIQIAANICGFGKQLSYDDLCYKLIGITI 128

Query: 121 QKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIF 172
            K  +    + R                           Y   DV    +I+
Sbjct: 129 DKTHQKSHWLKRPITS-------------------DMLNYAMLDVEYLYKIY 161


>gi|209559092|ref|YP_002285564.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes NZ131]
 gi|209540293|gb|ACI60869.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
           [Streptococcus pyogenes NZ131]
          Length = 833

 Score = 37.0 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            +   + + +E+     VAHN  F+  +L         ++ I R   T+ LA+       
Sbjct: 89  QVAHHIYQLIED--CIFVAHNVKFDANLLAEALFLEGYELTIPRV-DTVELAQLFFPRFE 145

Query: 107 -SALKAVGEALKLS 119
              L  +   L + 
Sbjct: 146 KYNLGHLSRQLNID 159


>gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
 gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
          Length = 463

 Score = 37.0 bits (84), Expect = 9.3,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 24/140 (17%)

Query: 1   MATLFIDFETRSP--IDLTKCGICKYAEDVCVILFAFGFDDHPVELWD------------ 46
           M T+ ID ET      D     I  Y  D   ++ +F    +P                 
Sbjct: 1   MYTI-IDVETTGLRPTDDKITEIAIYKHDGESVVDSFHSLVNPECYISDRITQITGITND 59

Query: 47  -CVHDPVMPQVLKEALE-NTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLAR 101
              + P   ++ K+ L        VAHN++F+   ++             + +CT+ ++R
Sbjct: 60  MVANAPKFYEIAKDILAITEGTVFVAHNAHFDYGFVREEFKALGYKF-TRKTLCTVRVSR 118

Query: 102 SNG---LPSALKAVGEALKL 118
                    +L  + +  K+
Sbjct: 119 KVFPGLPSYSLAKLCKHFKI 138


>gi|265762514|ref|ZP_06091082.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255122|gb|EEZ26468.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 216

 Score = 37.0 bits (84), Expect = 9.5,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 21/126 (16%)

Query: 53  MPQVLKEALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAV 112
           + Q + E LE+  V  V  +   +  +L        P ++  C  +           K++
Sbjct: 85  LTQPIIELLEDPKVIKVGLSLKDDFMMLHKRA----PFNQQACIELQEYVRPFGIQDKSL 140

Query: 113 GEALK-LSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREI 171
            +    L S+K+ + + L                             +Y   D      I
Sbjct: 141 QKIYGILFSEKISKSQRLSNW----------------EADVLTDAQKQYAATDAWACLNI 184

Query: 172 FKRLEP 177
           +  LE 
Sbjct: 185 YHLLEE 190


>gi|94988157|ref|YP_596258.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS9429]
 gi|94992044|ref|YP_600143.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS2096]
 gi|94541665|gb|ABF31714.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS9429]
 gi|94545552|gb|ABF35599.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS2096]
          Length = 833

 Score = 37.0 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            +   + + +E+     VAHN  F+  +L         ++ I R   T+ LA+       
Sbjct: 89  QVAHHIYQLIED--CIFVAHNVKFDANLLAEALFLEGYELTIPRV-DTVELAQLFFPRFE 145

Query: 107 -SALKAVGEALKLS 119
              L  +   L + 
Sbjct: 146 KYNLGHLSRQLNID 159


>gi|56808338|ref|ZP_00366097.1| COG1199: Rad3-related DNA helicases [Streptococcus pyogenes M49
           591]
          Length = 819

 Score = 37.0 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            +   + + +E+     VAHN  F+  +L         ++ I R   T+ LA+       
Sbjct: 75  QVAHHIYQLIED--CIFVAHNVKFDANLLAEALFLEGYELTIPRV-DTVELAQLFFPRFE 131

Query: 107 -SALKAVGEALKLS 119
              L  +   L + 
Sbjct: 132 KYNLGHLSRQLNID 145


>gi|306827727|ref|ZP_07460999.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes ATCC 10782]
 gi|304430045|gb|EFM33082.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes ATCC 10782]
          Length = 819

 Score = 37.0 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            +   + + +E+     VAHN  F+  +L         ++ I R   T+ LA+       
Sbjct: 75  QVAHHIYQLIED--CIFVAHNVKFDANLLAEALFLEGYELTIPRV-DTVELAQLFFPRFE 131

Query: 107 -SALKAVGEALKLS 119
              L  +   L + 
Sbjct: 132 KYNLGHLSRQLNID 145


>gi|228475529|ref|ZP_04060247.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|228270311|gb|EEK11746.1| conserved hypothetical protein [Staphylococcus hominis SK119]
          Length = 378

 Score = 37.0 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 616 NATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTS 653
              +  + I+L +HD I+ E     +  A  +  LM +
Sbjct: 318 QCDQEDFRIMLPIHDAIMIEC--NTDEVAERVRQLMET 353


>gi|270283861|ref|ZP_06193723.1| putative ribonuclease D [Bifidobacterium gallicum DSM 20093]
 gi|270277581|gb|EFA23435.1| putative ribonuclease D [Bifidobacterium gallicum DSM 20093]
          Length = 262

 Score = 37.0 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 52/174 (29%), Gaps = 29/174 (16%)

Query: 23  KYAEDVCVILFAFGFDDHPVELWD---CVHDPVMPQVLKEALENTDVTIVAHNSYFERTV 79
           +Y  D  ++   F  +   + L D      D        +A+ + +   + H+S  +   
Sbjct: 50  RYTHDDYLV--QFKREGAGIALVDPQAVAADGADWAEFMQAVGDAE--FILHDSAQDLPG 105

Query: 80  LKACFNLDIPIHRWICTLVLARSNGLPS-ALKAVGEALKLSSQKMEEGKELIARFCKGET 138
                +L I  H    T + AR  GL    L  V E              L     K  +
Sbjct: 106 FA---DLGIRPHALFDTELAARLLGLERFGLAYVTERY------------LGLTLAKEHS 150

Query: 139 HECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPLSSKEQELWYLDQTI 192
                 R  P      R +  Y   DV +  E+ + +        +  +  Q  
Sbjct: 151 AADWSHRPLP------RDWRNYAALDVELLIELREAMMRDLKAAGKEEWARQEF 198


>gi|94993950|ref|YP_602048.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon [Streptococcus pyogenes MGAS10750]
 gi|94547458|gb|ABF37504.1| ATP-dependent helicase, DinG family [Streptococcus pyogenes
           MGAS10750]
          Length = 833

 Score = 37.0 bits (84), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 52  VMPQVLKEALENTDVTIVAHNSYFERTVLKACF---NLDIPIHRWICTLVLARSNGLP-- 106
            +   + + +E+     VAHN  F+  +L         ++ I R   T+ LA+       
Sbjct: 89  QVAHHIYQLIED--CIFVAHNVKFDANLLAEALFLEGYELTIPRV-DTVELAQLFFPRFE 145

Query: 107 -SALKAVGEALKLS 119
              L  +   L + 
Sbjct: 146 KYNLGHLSRQLNID 159


>gi|326931222|ref|XP_003211732.1| PREDICTED: rab GTPase-binding effector protein 1-like [Meleagris
           gallopavo]
          Length = 854

 Score = 37.0 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 39/133 (29%), Gaps = 13/133 (9%)

Query: 167 VTREIFKRLEPLSSKEQELWYLDQTINDRGYCVDVALA-------HTLNQIVDVERTKLD 219
           V REI +    LS  ++E          +    D                 +  +  + +
Sbjct: 166 VEREIAELRRRLSEGQEEENL---ENEMKKAQEDAEKLRSVVMPMEKEIAALKEKLIEAE 222

Query: 220 QELESLTYGLVSSSR--CLEKLKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVF 277
           ++++ L    V         +      LE  + + +  ++  Q      +K   +   + 
Sbjct: 223 EKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLL 282

Query: 278 -NNRMRASRSAVL 289
              R + ++    
Sbjct: 283 EQERQQHNQLKHT 295


>gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
 gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
          Length = 892

 Score = 37.0 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 43/144 (29%), Gaps = 34/144 (23%)

Query: 2   ATLFIDFETRSPI----DLTKCG-------------ICKYAEDVCVILFAFGFDDHPVEL 44
             +  D ET        D+ +               +  Y      IL   G  D+P+  
Sbjct: 509 DIVVFDTETTGLDVFNDDIIEISAIKIRNGKQIGKTLDLYIYTDKTILPKLGIKDNPLYE 568

Query: 45  WD---CVHDP--VMPQVLKEAL--ENTDVTIVAHNSYFERT----VLKACFNLDIPIH-- 91
                        + + L E L   +  +  +AHN  ++       L+     ++  +  
Sbjct: 569 IYNEKLNSGELINIKEALNEFLKFADNSIL-MAHNINYDYHILDNCLRRYTGDNLNNYNF 627

Query: 92  RWICTLVLARSNGL---PSALKAV 112
           ++  +L + R          L+ +
Sbjct: 628 KYFDSLKIIRLLEPSLRSYKLEHL 651


>gi|294673634|ref|YP_003574250.1| 3'-5' exonuclease [Prevotella ruminicola 23]
 gi|294472246|gb|ADE81635.1| 3'-5' exonuclease [Prevotella ruminicola 23]
          Length = 217

 Score = 37.0 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 44/186 (23%), Gaps = 41/186 (22%)

Query: 3   TLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEALE 62
            L  D ETR      K G+          L      +    L+   H  + P  +K  L 
Sbjct: 47  VLGFDTETRPSF---KKGVHH-----KCSLLQVSTSNC-CFLFRLNHIGLCPA-VKRLLA 96

Query: 63  NTDVTIVAHNSYFERTVLKA-----CFNLDIPIHRWICTLVLARSNGLPSALKAVGEALK 117
           +  VT V           +          D  +  ++              L+ +   + 
Sbjct: 97  DNTVTKVG-------LAWRNDALGLHQLGDFEMGEFVD-------------LQDMARKIG 136

Query: 118 LSSQKMEEGKELIARFCKGETHECLYDRNKPNH-REAWRLFGEYCKGDVTVTREIFKRLE 176
           +  Q + +                  ++               Y   D     +++   +
Sbjct: 137 IEDQSLAKL-----YANVFGERISKREQLTNWERDVLDDHQKRYAATDAWACVQLYNEFK 191

Query: 177 PLSSKE 182
            +    
Sbjct: 192 RMIENN 197


>gi|49257042|dbj|BAD24831.1| hypothetical protein [Staphylococcus aureus]
          Length = 369

 Score = 37.0 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 602 VQAVSRDILAEGMMNATKAGY-----DIVLTVHDEIVCETPDTDEFNASMLYHLMTSN 654
           VQ V+  I    ++   KA        I++ +HD I+ E    DE  A  +  LM S 
Sbjct: 291 VQTVASYIFKHILLEVYKAQCEQKTFKIIVPIHDAIMIEC--DDEVTARDVAQLMKST 346


>gi|83645396|ref|YP_433831.1| ribonuclease D [Hahella chejuensis KCTC 2396]
 gi|83633439|gb|ABC29406.1| ribonuclease D [Hahella chejuensis KCTC 2396]
          Length = 398

 Score = 37.0 bits (84), Expect = 9.9,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 53/197 (26%), Gaps = 40/197 (20%)

Query: 2   ATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQV--LKE 59
             L +D E          G   Y     + L    +D   V L D +    +     +  
Sbjct: 37  DWLAVDTE-------FIRGTTFYPAPALLQL----YDRQCVYLVDML---KITDWSGVSR 82

Query: 60  ALENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNG--LPSALKAVGEA-L 116
             E+ D+  V H    +   L  C  L       I T V        L   L+++    L
Sbjct: 83  LFESRDILKVVHACSEDLE-LFNCVGLS-QPCGLIDTQVANALLDGELNEGLQSLVRQNL 140

Query: 117 KLSSQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLE 176
            +  +K     +   R                          +Y + DV V   ++++L 
Sbjct: 141 GIELEKHATRSDWTQRPLT-------------------DKQIQYAQEDVVVLWPLYQKLA 181

Query: 177 PLSSKEQELWYLDQTIN 193
                  +     +   
Sbjct: 182 EALRLSGKYEIALEEGE 198


>gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
           bacterium SSC/2]
          Length = 1470

 Score = 37.0 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 23/138 (16%)

Query: 3   TLFIDFETR---SPID-LTKCGICKYAEDVCV-----------ILFAFGFDDHPVELWDC 47
            +  D ET    S  D + + G  +  E   +               +          D 
Sbjct: 444 YVVFDIETTGFNSVNDRIIEIGAVRVVE-GEIKETFSEFVNPERPIPYKITQLTTITDDM 502

Query: 48  VHDPVMPQVLKEALEN--TDVTIVAHNSYFERTVLK-ACFNLDIPIHR-WICTLVLARSN 103
           V D    + +            +VAHN+ F+   ++     L++P     + TL LAR  
Sbjct: 503 VKDAGTIEEILPQFLKFCAGSVLVAHNAGFDTGFIRENAKRLNLPYDHTVVDTLGLARCL 562

Query: 104 GLPSA---LKAVGEALKL 118
                   L  + + L +
Sbjct: 563 MGHLGKFTLDNICKHLNI 580


>gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
 gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
           KT]
          Length = 462

 Score = 37.0 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 27/137 (19%)

Query: 6   IDFETRSPID----LTKCGICKYAEDVCVILFAFGFDDH--------------PVELWDC 47
           +D ET         +T+ G+ +Y   + V  +    +                   + D 
Sbjct: 8   LDLETTGATPVTDRITEIGLIRYENGIEVKRWQTLVNPEMHISPFITSITGISNAMVKDA 67

Query: 48  VHDPVMPQVLKEALENTDVTIVAHNSYFERTVLK---ACFNLDIPIHRWICTLVLARSNG 104
                +   L   L      + AHN  F+   LK      ++ +     +CT+ L+R   
Sbjct: 68  PLFKDVANELLSHLH--GAVLCAHNVRFDYGFLKNEFRRLDITLR-QNVLCTVKLSRRLY 124

Query: 105 L---PSALKAVGEALKL 118
                  L A+     +
Sbjct: 125 PEYKSHGLDAIIARHGI 141


>gi|86133336|ref|ZP_01051918.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
 gi|85820199|gb|EAQ41346.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
          Length = 359

 Score = 37.0 bits (84), Expect = 10.0,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 27/174 (15%)

Query: 6   IDFETRS----PIDLTKCGICKYAEDVCVI--LFAFGFDDHPVE--LWDCV--------H 49
           +D ET         +T+  I KY     ++    +    + P++  +            +
Sbjct: 5   LDIETTGGKFNEEGITEIAIYKYDGQ-EIVDQFISLINPEKPIQEFVVRLTGINNKMLKN 63

Query: 50  DPVMPQVLKEALE-NTDVTIVAHNSYFERTVLKA---CFNLDIPIHRWICTLVLARSNG- 104
            P   +V K  +E   +  IVAHNS F+  +L+        D   +   CT+ L+++   
Sbjct: 64  APKFYEVAKRIVEITKNCIIVAHNSAFDYRILRTEFDRLGFDFERNTL-CTVELSQALIL 122

Query: 105 --LPSALKAVGEALKLS--SQKMEEGKELIARFCKGETHECLYDRNKPNHREAW 154
                +L  + ++L +    +    G  L          E  + +    +   +
Sbjct: 123 DQPSYSLGKLTKSLGIPISDRHRATGDALATVKLFKLLLEKDHKKTIIQNAIKY 176


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311    0.129    0.361 

Lambda     K      H
   0.267   0.0396    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,893,977,712
Number of Sequences: 14124377
Number of extensions: 218222844
Number of successful extensions: 701351
Number of sequences better than 10.0: 8901
Number of HSP's better than 10.0 without gapping: 3959
Number of HSP's successfully gapped in prelim test: 4942
Number of HSP's that attempted gapping in prelim test: 653970
Number of HSP's gapped (non-prelim): 15580
length of query: 675
length of database: 4,842,793,630
effective HSP length: 146
effective length of query: 529
effective length of database: 2,780,634,588
effective search space: 1470955697052
effective search space used: 1470955697052
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 85 (37.4 bits)